Use GITHUB_OUTPUT envvar instead of set-output command as the latter is deprecated
This commit is contained in:
Arun
+69
-64
@@ -24,76 +24,76 @@ jobs:
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r_bindings: ${{ steps.mlpack_version.outputs.mlpack_r_package }}
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steps:
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- uses: actions/checkout@v3
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- uses: actions/checkout@v3
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- name: Extract mlpack version
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id: mlpack_version
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run: |
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MLPACK_VERSION_MAJOR=$(grep -i ".*#define MLPACK_VERSION_MAJOR.*" src/mlpack/core/util/version.hpp | grep -o "[0-9]*")
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MLPACK_VERSION_MINOR=$(grep -i ".*#define MLPACK_VERSION_MINOR.*" src/mlpack/core/util/version.hpp | grep -o "[0-9]*")
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MLPACK_VERSION_PATCH=$(grep -i ".*#define MLPACK_VERSION_PATCH.*" src/mlpack/core/util/version.hpp | grep -o "[0-9]*")
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MLPACK_VERSION_VALUE=${MLPACK_VERSION_MAJOR}.${MLPACK_VERSION_MINOR}.${MLPACK_VERSION_PATCH}
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echo ::set-output name=mlpack_r_package::$(echo mlpack_"$MLPACK_VERSION_VALUE".tar.gz)
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- name: Extract mlpack version
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id: mlpack_version
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run: |
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MLPACK_VERSION_MAJOR=$(grep -i ".*#define MLPACK_VERSION_MAJOR.*" src/mlpack/core/util/version.hpp | grep -o "[0-9]*")
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MLPACK_VERSION_MINOR=$(grep -i ".*#define MLPACK_VERSION_MINOR.*" src/mlpack/core/util/version.hpp | grep -o "[0-9]*")
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MLPACK_VERSION_PATCH=$(grep -i ".*#define MLPACK_VERSION_PATCH.*" src/mlpack/core/util/version.hpp | grep -o "[0-9]*")
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MLPACK_VERSION_VALUE=${MLPACK_VERSION_MAJOR}.${MLPACK_VERSION_MINOR}.${MLPACK_VERSION_PATCH}
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echo "mlpack_r_package=$(echo mlpack_"$MLPACK_VERSION_VALUE".tar.gz)" >> $GITHUB_OUTPUT
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# Setup Pandoc
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- uses: r-lib/actions/setup-pandoc@v2
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# Setup Pandoc
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- uses: r-lib/actions/setup-pandoc@v2
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# Setup R actions
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- uses: r-lib/actions/setup-r@v2
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# Setup R actions
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- uses: r-lib/actions/setup-r@v2
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- name: Query dependencies
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run: |
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cp src/mlpack/bindings/R/mlpack/DESCRIPTION.in DESCRIPTION
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Rscript -e "install.packages('remotes')" -e "saveRDS(remotes::dev_package_deps(dependencies = TRUE), 'depends.Rds')"
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- name: Query dependencies
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run: |
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cp src/mlpack/bindings/R/mlpack/DESCRIPTION.in DESCRIPTION
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Rscript -e "install.packages('remotes')" -e "saveRDS(remotes::dev_package_deps(dependencies = TRUE), 'depends.Rds')"
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- name: Cache R packages
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if: runner.os != 'Windows' && runner.os != 'macOS'
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uses: actions/cache@v3
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with:
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path: ${{ env.R_LIBS_USER }}
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key: ${{ runner.os }}-r-release-${{ hashFiles('depends.Rds') }}
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restore-keys: ${{ runner.os }}-r-release-
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- name: Cache R packages
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if: runner.os != 'Windows' && runner.os != 'macOS'
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uses: actions/cache@v3
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with:
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path: ${{ env.R_LIBS_USER }}
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key: ${{ runner.os }}-r-release-${{ hashFiles('depends.Rds') }}
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restore-keys: ${{ runner.os }}-r-release-
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- name: Install Build Dependencies
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run: |
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sudo apt-get update
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# We don't install cereal via apt, because the Debian packagers
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# split the rapidjson dependency into a separate package. We will
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# bundle the cereal sources with the R package, so we want them to
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# be exactly the upstream sources (with rapidjson included).
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sudo apt-get install -y --allow-unauthenticated libopenblas-dev liblapack-dev g++ libensmallen-dev libhdf5-dev libarmadillo-dev libcurl4-openssl-dev
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wget https://github.com/USCiLab/cereal/archive/refs/tags/v1.3.2.tar.gz
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tar -xvzpf v1.3.2.tar.gz
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# These directives cause warnings on CRAN:
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# https://github.com/USCiLab/cereal/blob/master/include/cereal/external/base64.hpp#L28-L31
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# The command below comments them out.
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sed -i 's|#pragma|// #pragma|' cereal-1.3.2/include/cereal/external/base64.hpp
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- name: Install Build Dependencies
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run: |
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sudo apt-get update
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# We don't install cereal via apt, because the Debian packagers
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# split the rapidjson dependency into a separate package. We will
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# bundle the cereal sources with the R package, so we want them to
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# be exactly the upstream sources (with rapidjson included).
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sudo apt-get install -y --allow-unauthenticated libopenblas-dev liblapack-dev g++ libensmallen-dev libhdf5-dev libarmadillo-dev libcurl4-openssl-dev
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wget https://github.com/USCiLab/cereal/archive/refs/tags/v1.3.2.tar.gz
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tar -xvzpf v1.3.2.tar.gz
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# These directives cause warnings on CRAN:
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# https://github.com/USCiLab/cereal/blob/master/include/cereal/external/base64.hpp#L28-L31
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# The command below comments them out.
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sed -i 's|#pragma|// #pragma|' cereal-1.3.2/include/cereal/external/base64.hpp
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- name: Install R-bindings dependencies
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run: |
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remotes::install_deps(dependencies = TRUE)
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remotes::install_cran("roxygen2")
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remotes::install_cran("pkgbuild")
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shell: Rscript {0}
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- name: Install R-bindings dependencies
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run: |
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remotes::install_deps(dependencies = TRUE)
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remotes::install_cran("roxygen2")
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remotes::install_cran("pkgbuild")
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shell: Rscript {0}
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- name: CMake
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run: |
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mkdir build
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cd build && cmake -DDEBUG=OFF -DPROFILE=OFF -DBUILD_CLI_EXECUTABLES=OFF -DBUILD_PYTHON_BINDINGS=OFF -DBUILD_JULIA_BINDINGS=OFF -DBUILD_GO_BINDINGS=OFF -DBUILD_R_BINDINGS=ON -DDOWNLOAD_DEPENDENCIES=ON -DBUILD_TESTS=ON -DCEREAL_INCLUDE_DIR=../cereal-1.3.2/include/ ..
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- name: CMake
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run: |
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mkdir build
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cd build && cmake -DDEBUG=OFF -DPROFILE=OFF -DBUILD_CLI_EXECUTABLES=OFF -DBUILD_PYTHON_BINDINGS=OFF -DBUILD_JULIA_BINDINGS=OFF -DBUILD_GO_BINDINGS=OFF -DBUILD_R_BINDINGS=ON -DDOWNLOAD_DEPENDENCIES=ON -DBUILD_TESTS=ON -DCEREAL_INCLUDE_DIR=../cereal-1.3.2/include/ ..
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- name: Build
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run: |
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cd build && make
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- name: Build
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run: |
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cd build && make
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- name: Run tests via ctest
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run: |
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cd build && CTEST_OUTPUT_ON_FAILURE=1 ctest -T Test .
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- name: Run tests via ctest
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run: |
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cd build && CTEST_OUTPUT_ON_FAILURE=1 ctest -T Test .
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- name: Upload R packages
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uses: actions/upload-artifact@v3
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with:
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name: mlpack_r_tarball
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path: build/src/mlpack/bindings/R/${{ steps.mlpack_version.outputs.mlpack_r_package }}
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- name: Upload R packages
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uses: actions/upload-artifact@v3
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with:
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name: mlpack_r_tarball
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path: build/src/mlpack/bindings/R/${{ steps.mlpack_version.outputs.mlpack_r_package }}
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R-CMD-check:
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needs: jobR
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@@ -106,9 +106,14 @@ jobs:
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fail-fast: false
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matrix:
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config:
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- {os: windows-latest, r: 'release', name: 'Windows R'}
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- {os: macOS-latest, r: 'release', name: 'macOS R'}
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- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release', name: 'Linux R'}
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- { os: windows-latest, r: "release", name: "Windows R" }
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- { os: macOS-latest, r: "release", name: "macOS R" }
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- {
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os: ubuntu-latest,
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r: "devel",
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http-user-agent: "release",
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name: "Linux R",
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}
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env:
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MAKEFLAGS: "-j 2"
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@@ -146,8 +151,8 @@ jobs:
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- name: Install check dependencies
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if: runner.os != 'Windows' && runner.os != 'macOS'
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run: |
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sudo apt-get update
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sudo apt-get install -y --allow-unauthenticated libcurl4-openssl-dev
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sudo apt-get update
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sudo apt-get install -y --allow-unauthenticated libcurl4-openssl-dev
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- name: Install dependencies
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run: |
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