0ecd6db488cdabb619fbda9e1f0f5c1937d06c40
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Commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
 Ryan CurtinandDirk Eddelbuettel
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e70a04fbba |
Add Docker deployment documentation (#3907)
* Add a first attempt at explicitly using Jenkinsfiles. * A first attempt... * Put code in a script block. * Add first attempt at link check job pipeline. * Hopefully correct shell block. * Install git. * Install packages as root. * Use custom image that already has dependencies installed. * Try processing the JUnit results. * Fix syntax (hopefully). * Try to get the build to set its status on Github. * Try and see if I can get the snippet build to run too. * A first attempt at reviving the static code analysis build. * Refactor style check job a bit. * Try to clean up other files and have them set statuses. * Set status in script blocks. * Fix directory (this may not fix my problem). * Should I load in the script step? * Maybe I can just load it without a name. * Maybe I have my path wrong. * Will this work? Just a test... * Try using a plugin instead. * And if I define the function manually at the top? * Maybe this will fix the load. * Try to turn unstable into failed. * Hopefully fix documentation builds. * Fix script blocks. * Maybe fix static code analysis job. * Try to adapt PR number variable. * First attempt at cross-compilation job. * Try to fix some syntax. * Clean workspaces after build. * Try to put the matrix in the right place. * Another attempt at the matrix configuration. * Maybe I have to nest it deeper. * Maybe I have to clean always? * What we need is more tabbing. * Use try/catch to handle failed junit processing. * Better handling of environment variables. * Try a differernt approach than try/catch. * Try to get some more information about ccache. * Is it possible we could store the ccache at a higher level? * Maybe I have the variable name wrong. * Clean the cross-compilation workspace. * Try mounting the ccache so it can be shared across multiple jobs. * Always pull images. * We need to run on the same node. * Run on only one core. * Try building in the Docker container in a different way. * Do I have the order backwards? * Can I run anything at all in the container? * The static code analysis job isn't helpful. * Try to set the user of the docker container. * Rebuild the Docker container instead. * Always pull an updated image. * Download any necessary dependencies too. * Oops, use the correct CMake options. * Fix line break in the wrong place. * Make sure to use the correct architecture. * We can't use MATCHES, that is a regex. * Oops, we need to use STREQUAL. * Bump to an older version since newer versions don't have gfortran. * Try to run the tests on the target. * Correct syntax. * Okay, I'm not allowed to generate a stage name. * Try cleaning the workspace at the start of the build. * Okay, so I just can't depend on the workspace cleaning job, wonderful. * Try and add the passphrase correctly. * Fix path for memory checks. * Fix path to test. * Fix PR number variable. * Try to fix path for test copying. * Try to get the PR number correct. * Try and centralize where the link cache is stored. * Why is it being printed strangely? * Is there some weird restriction where this all has to be on one line? * Always publish the HTML, and fix a link. * Try to fix SSH host key check. * Make the reports directory. * Try to fix file parsing. * Try to enable ccache. * Try to set ccache directory correctly. * Try to get the full pipeline set up correctly for cross-compilation. * Fix path to test data. * Allow debug builds when cross-compiling. * Remember to unpack all the test data! * Fail tests when the data isn't there. * Maybe I can use find instead. * Double escape for backslash? * What if we just run the test? * Port Catch2 improvement for junit runner. See https://github.com/catchorg/Catch2/commit/c29e198eab0ccdb190495397854b937677385e2e. * Re-enable junit testing (hopefully it will work now). * Output directly to the xml file. * Try to clean up regex. * Try to set IN PROGRESS status. * Could it be called RUNNING? * I guess I don't get access to set jobs in progress through this API. * Fix regex for test name extraction. * Try to clean up Jenkinsfiles. * Fix parameter name. * Maybe fix syntax? * Does it work without keyword arguments? * Correctly accept named parameters. * Abort previous builds to reduce load on Jenkins. * Use optimization when compiling. * Fix syntax for abortPrevious. * Fix missing closing brace... * Update links in CI documentation and try to fix memory check job. * Add Docker deployment page. * Fix link. * Fix missing link in pipeline. * Apply suggestions from code review Co-authored-by: Dirk Eddelbuettel <edd@debian.org> * Try to get some more information on the build failure. * Fix link that now redirects. * Try to get some more information about why we are not linking against OpenBLAS. * I think the variable name was wrong, we will see... * Clean things up since the build should work now. --------- Co-authored-by: Dirk Eddelbuettel <edd@debian.org> |
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b5e3284cf5 |
Bootstrap strategy for RandomForest (#3829)
* Added sequential bootstrapping to random forest. * Fixed namespace. * Fixed style checks. * Fixed compilation issue. * Comply to __libcpp_random_is_valid_urng * Incorporated review feedback * Corrected style checks. * Reverted documentation. * Made constructor implicit to catch armadillo template optimizations * Fixed compilation error. * Fixed style check. * Fixed compilation error. * Align argument lists between public and private Train function. * Explicitly state template use to help GCC * Fixed style check. * Added name to contributor list. * Changed indicator matrix to interval matrix * Updated docs, implementation and testing after code review. * Fixed style warnings. * Updated documentation. * Update src/mlpack/methods/random_forest/bootstrap.hpp Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/user/methods/random_forest.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Incorporating code review feedback * Changed based on code review feedback * reduced computational complexity. * resolved conflict. * resolved conflict * Reworked after review * Avoiding recomputation of the concurrency vector for speed-up. * Resolve merge conflict * fixed style * fixed style * Remove assert statement * Update src/mlpack/tests/random_forest_test.cpp Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update src/mlpack/tests/random_forest_test.cpp Co-authored-by: Ryan Curtin <ryan@ratml.org> * Integrated changes after code review. * Fixed style * Resolved conflict * Update doc/user/methods/random_forest.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/user/methods/random_forest.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update src/mlpack/methods/random_forest/bootstrap.hpp Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update src/mlpack/methods/random_forest/bootstrap.hpp Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/user/methods/random_forest.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/user/methods/random_forest.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update src/mlpack/methods/random_forest/bootstrap.hpp Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update src/mlpack/methods/random_forest/bootstrap.hpp Co-authored-by: Ryan Curtin <ryan@ratml.org> * Incorporated review comments. * Fixed styling issues * Restart style checks * Update src/mlpack/tests/random_forest_test.cpp Co-authored-by: Ryan Curtin <ryan@ratml.org> * Reworked documentation from review comments * Fixed style check * Update doc/user/methods/random_forest.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update HISTORY.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/user/methods/random_forest.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update src/mlpack/methods/random_forest/bootstrap.hpp Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update src/mlpack/methods/random_forest/bootstrap.hpp Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/user/methods/random_forest.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/user/methods/random_forest.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Reworked example amd unit test. * fixed build * fixed documentation build * Fixing style check build * fixing style checks * fixing check build * Fix minor compilation issues with example, and make it give output. --------- Co-authored-by: Felix Patschkowski <felix.patschkowski@itecequipment.com> Co-authored-by: Ryan Curtin <ryan@ratml.org> Co-authored-by: Felix Patschkowski <felix.patschkowski@gmail.com> |
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Omar Shrit
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2076090a08 |
Fix small bug in finding mlpack if downloaded as dependency (#3900)
* Fix small bug in finding mlpack Since mlpack include is inside a `src/` directory, this is make it more complicated for CMake to find mlpack path if it is pulled as a dependency by the user. Therefore, to fix this we are setting directly the INCLUDE_PATH as the SEARCH_PATH as long as mlpack.hpp is found. Other minor fixes are related to if /else logic. This will allow to set the directories when we find the library in a second round. Signed-off-by: Omar Shrit <omar@avontech.fr> * Fix minor things Signed-off-by: Omar Shrit <omar@avontech.fr> --------- Signed-off-by: Omar Shrit <omar@avontech.fr> |
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Omar ShritandRyan Curtin
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58115633dd |
Add Findmlpack.cmake (#3872)
* Add Findmlack.cmake I opened this PR, because it was so difficult to revive the old one. Signed-off-by: Omar Shrit <omar@avontech.fr> * Adding the comments from the previous PR Signed-off-by: Omar Shrit <omar@avontech.fr> * Add the docs again Signed-off-by: Omar Shrit <omar@avontech.fr> * Add depedencies functions Signed-off-by: Omar Shrit <omar@avontech.fr> * Make the filename compatible with the standard Signed-off-by: Omar Shrit <omar@avontech.fr> * Move the dependencies search from CMakeLists Signed-off-by: Omar Shrit <omar@avontech.fr> * Remove MATHJAX Signed-off-by: Omar Shrit <omar@avontech.fr> * Refactor the CMake into dependencies Signed-off-by: Omar Shrit <omar@avontech.fr> * Remove Findarmadillo since it exist in CMake Signed-off-by: Omar Shrit <omar@avontech.fr> * Remove Arpack as well, already in the main stream Signed-off-by: Omar Shrit <omar@avontech.fr> * This needs to go, tooo old Signed-off-by: Omar Shrit <omar@avontech.fr> * Move cereal and ensmallen to mlpack Signed-off-by: Omar Shrit <omar@avontech.fr> * Get rid of the empty files Signed-off-by: Omar Shrit <omar@avontech.fr> * Remove Doxygen generation file Signed-off-by: Omar Shrit <omar@avontech.fr> * Finish Findmlpack.cmake file Signed-off-by: Omar Shrit <omar@avontech.fr> * Increase Cmake version to 3.11 to avoid the warning Signed-off-by: Omar Shrit <omar@avontech.fr> * Add POST_BUILD to get rid of the warning Signed-off-by: Omar Shrit <omar@avontech.fr> * Remove really old support for MACOS 11 and 9 This is more like 15 years old already Signed-off-by: Omar Shrit <omar@avontech.fr> * Already specified no need to do it again Signed-off-by: Omar Shrit <omar@avontech.fr> * Fix according to comments from @rcurtin Signed-off-by: Omar Shrit <omar@avontech.fr> * add message for armadillo Signed-off-by: Omar Shrit <omar@avontech.fr> * Try to fix windows and cross CI at the same time Signed-off-by: Omar Shrit <omar@avontech.fr> * Let us add brutally STB and Armadillo Signed-off-by: Omar Shrit <omar@avontech.fr> * Remove STB image independant file from here Signed-off-by: Omar Shrit <omar@avontech.fr> * Adding more into findmlpack Signed-off-by: Omar Shrit <omar@avontech.fr> * Move things from CMake as they are not directly relevant Signed-off-by: Omar Shrit <omar@avontech.fr> * Move the autdownloader to findmlpack Signed-off-by: Omar Shrit <omar@avontech.fr> * remove the autodownload Signed-off-by: Omar Shrit <omar@avontech.fr> * Remove cmakeextras, added for obsure reasons Signed-off-by: Omar Shrit <omar@avontech.fr> * Remove license for really old stuff Signed-off-by: Omar Shrit <omar@avontech.fr> * Re-order the file how it should be Signed-off-by: Omar Shrit <omar@avontech.fr> * Move out of dependency Signed-off-by: Omar Shrit <omar@avontech.fr> * Remove Dependencies, as it is no longer used Signed-off-by: Omar Shrit <omar@avontech.fr> * Add stb to this file again Signed-off-by: Omar Shrit <omar@avontech.fr> * reorganize functions Signed-off-by: Omar Shrit <omar@avontech.fr> * Add find armadillo Signed-off-by: Omar Shrit <omar@avontech.fr> * Remove Dependencies files and autdownload Signed-off-by: Omar Shrit <omar@avontech.fr> * Make it use the internal functions Signed-off-by: Omar Shrit <omar@avontech.fr> * Finishing most of the cmake modifications Signed-off-by: Omar Shrit <omar@avontech.fr> * Fix a couple of last things Signed-off-by: Omar Shrit <omar@avontech.fr> * Change the name and remove old file Signed-off-by: Omar Shrit <omar@avontech.fr> * Fix all comments left by @rcurtin Signed-off-by: Omar Shrit <omar@avontech.fr> * Fix the docs for each of the function Signed-off-by: Omar Shrit <omar@avontech.fr> * Move the cross compilation to inside fetch and make it as an auto detect Signed-off-by: Omar Shrit <omar@avontech.fr> * Cut the parts that are refactored Signed-off-by: Omar Shrit <omar@avontech.fr> * Fix function name Signed-off-by: Omar Shrit <omar@avontech.fr> * Remove the "" Signed-off-by: Omar Shrit <omar@avontech.fr> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update CMake/mlpack.cmake Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update CMake/mlpack.cmake Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update CMake/mlpack.cmake Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update CMake/mlpack.cmake Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update CMake/mlpack.cmake Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update CMake/mlpack.cmake Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Fix text and code Signed-off-by: Omar Shrit <omar@avontech.fr> * Apply comments from @rcurtin Signed-off-by: Omar Shrit <omar@avontech.fr> * modify CMakeLists accordingly Signed-off-by: Omar Shrit <omar@avontech.fr> * Add PR in the history Signed-off-by: Omar Shrit <omar@avontech.fr> * Update CMake/mlpack.cmake Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update CMake/mlpack.cmake Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update HISTORY.md Co-authored-by: Ryan Curtin <ryan@ratml.org> * Update doc/embedded/crosscompile_example.md Co-authored-by: Ryan Curtin <ryan@ratml.org> --------- Signed-off-by: Omar Shrit <omar@avontech.fr> Co-authored-by: Ryan Curtin <ryan@ratml.org> |