103 lines
3.6 KiB
YAML
103 lines
3.6 KiB
YAML
on:
|
|
workflow_dispatch:
|
|
push:
|
|
branches:
|
|
- master
|
|
pull_request:
|
|
branches:
|
|
- master
|
|
release:
|
|
types: [published, created, edited]
|
|
|
|
jobs:
|
|
jobR:
|
|
name: mlpack-R
|
|
runs-on: ubuntu-20.04
|
|
outputs:
|
|
r_bindings: ${{ steps.mlpack_version.outputs.mlpack_r_package }}
|
|
steps:
|
|
- uses: actions/checkout@v2
|
|
|
|
- name: Extract mlpack version
|
|
id: mlpack_version
|
|
run: |
|
|
MLPACK_VERSION_MAJOR=$(grep -i ".*#define MLPACK_VERSION_MAJOR.*" src/mlpack/core/util/version.hpp | grep -o "[0-9]*")
|
|
MLPACK_VERSION_MINOR=$(grep -i ".*#define MLPACK_VERSION_MINOR.*" src/mlpack/core/util/version.hpp | grep -o "[0-9]*")
|
|
MLPACK_VERSION_PATCH=$(grep -i ".*#define MLPACK_VERSION_PATCH.*" src/mlpack/core/util/version.hpp | grep -o "[0-9]*")
|
|
MLPACK_VERSION_VALUE=${MLPACK_VERSION_MAJOR}.${MLPACK_VERSION_MINOR}.${MLPACK_VERSION_PATCH}
|
|
echo ::set-output name=mlpack_r_package::$(echo mlpack_"$MLPACK_VERSION_VALUE".tar.gz)
|
|
|
|
- name: Install Build Dependencies
|
|
run: |
|
|
sudo apt-get update
|
|
sudo apt-get install -y --allow-unauthenticated libopenblas-dev liblapack-dev g++ libboost-all-dev
|
|
curl https://data.kurg.org/armadillo-8.400.0.tar.xz | tar -xvJ && cd armadillo*
|
|
cmake . && make && sudo make install && cd ..
|
|
sudo add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu xenial-cran40/'
|
|
sudo apt-get -y update
|
|
sudo apt-get install -y r-base-core
|
|
sudo Rscript -e "install.packages(c('Rcpp', 'RcppArmadillo', 'RcppEnsmallen', 'BH', 'roxygen2', 'testthat'))"
|
|
|
|
- name: CMake
|
|
run: |
|
|
mkdir build
|
|
cd build && cmake -DDEBUG=OFF -DPROFILE=OFF -DBUILD_PYTHON_BINDINGS=OFF -DBUILD_JULIA_BINDINGS=OFF -DBUILD_GO_BINDINGS=OFF -DBUILD_R_BINDINGS=ON ..
|
|
|
|
- name: Build
|
|
run: |
|
|
cd build && make R -j2
|
|
|
|
- name: Upload R packages
|
|
uses: actions/upload-artifact@v2
|
|
with:
|
|
name: mlpack_r_tarball
|
|
path: build/src/mlpack/bindings/R/${{ steps.mlpack_version.outputs.mlpack_r_package }}
|
|
|
|
R-CMD-check:
|
|
needs: jobR
|
|
runs-on: ${{ matrix.config.os }}
|
|
|
|
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
|
|
|
|
strategy:
|
|
fail-fast: false
|
|
matrix:
|
|
config:
|
|
- {os: windows-latest, r: '4.0'}
|
|
- {os: macOS-latest, r: 'release'}
|
|
- {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
|
|
|
|
|
|
env:
|
|
MAKEFLAGS: "-j 2"
|
|
R_BUILD_ARGS: "--no-build-vignettes"
|
|
R_CHECK_ARGS: "--no-build-vignettes"
|
|
_R_CHECK_FORCE_SUGGESTS: 0
|
|
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
|
|
|
|
steps:
|
|
- uses: actions/download-artifact@v2
|
|
with:
|
|
name: mlpack_r_tarball
|
|
|
|
- uses: r-lib/actions/setup-r@master
|
|
with:
|
|
r-version: ${{ matrix.config.r }}
|
|
|
|
- uses: r-lib/actions/setup-pandoc@master
|
|
|
|
- name: Install dependencies
|
|
run: |
|
|
Rscript -e "install.packages('remotes')" -e "remotes::install_cran('rcmdcheck')"
|
|
Rscript -e "install.packages(c('Rcpp', 'RcppArmadillo', 'RcppEnsmallen', 'BH', 'roxygen2', 'testthat'))"
|
|
|
|
- name: Check
|
|
run: Rscript -e "rcmdcheck::rcmdcheck('${{ needs.jobR.outputs.r_bindings }}', args = c('--no-manual','--as-cran'), error_on = 'warning', check_dir = 'check')"
|
|
|
|
- name: Upload check results
|
|
if: failure()
|
|
uses: actions/upload-artifact@master
|
|
with:
|
|
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
|
|
path: check
|