908 lines
210 KiB
HTML
908 lines
210 KiB
HTML
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
|
<html xmlns="http://www.w3.org/1999/xhtml">
|
|
<head>
|
|
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
|
|
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
|
|
<meta name="generator" content="Doxygen 1.8.5"/>
|
|
<title>Voro++: container.hh Source File</title>
|
|
<link href="tabs.css" rel="stylesheet" type="text/css"/>
|
|
<script type="text/javascript" src="jquery.js"></script>
|
|
<script type="text/javascript" src="dynsections.js"></script>
|
|
<link href="doxygen.css" rel="stylesheet" type="text/css" />
|
|
</head>
|
|
<body>
|
|
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
|
|
<div id="titlearea">
|
|
<table cellspacing="0" cellpadding="0">
|
|
<tbody>
|
|
<tr style="height: 56px;">
|
|
<td style="padding-left: 0.5em;">
|
|
<div id="projectname">Voro++
|
|
</div>
|
|
</td>
|
|
</tr>
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
<!-- end header part -->
|
|
<!-- Generated by Doxygen 1.8.5 -->
|
|
<div id="navrow1" class="tabs">
|
|
<ul class="tablist">
|
|
<li><a href="index.html"><span>Main Page</span></a></li>
|
|
<li><a href="annotated.html"><span>Data Structures</span></a></li>
|
|
<li class="current"><a href="files.html"><span>Files</span></a></li>
|
|
</ul>
|
|
</div>
|
|
<div id="navrow2" class="tabs2">
|
|
<ul class="tablist">
|
|
<li><a href="files.html"><span>File List</span></a></li>
|
|
<li><a href="globals.html"><span>Globals</span></a></li>
|
|
</ul>
|
|
</div>
|
|
</div><!-- top -->
|
|
<div class="header">
|
|
<div class="headertitle">
|
|
<div class="title">container.hh</div> </div>
|
|
</div><!--header-->
|
|
<div class="contents">
|
|
<a href="container_8hh.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// Voro++, a 3D cell-based Voronoi library</span></div>
|
|
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">//</span></div>
|
|
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// Author : Chris H. Rycroft (LBL / UC Berkeley)</span></div>
|
|
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Email : chr@alum.mit.edu</span></div>
|
|
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// Date : August 30th 2011</span></div>
|
|
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment"></span></div>
|
|
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">/** \file container.hh</span></div>
|
|
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment"> * \brief Header file for the container_base and related classes. */</span></div>
|
|
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> </div>
|
|
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#ifndef VOROPP_CONTAINER_HH</span></div>
|
|
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor"></span><span class="preprocessor">#define VOROPP_CONTAINER_HH</span></div>
|
|
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor"></span></div>
|
|
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include <cstdio></span></div>
|
|
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include <vector></span></div>
|
|
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> </div>
|
|
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include "<a class="code" href="config_8hh.html">config.hh</a>"</span></div>
|
|
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="preprocessor">#include "<a class="code" href="common_8hh.html">common.hh</a>"</span></div>
|
|
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="preprocessor">#include "<a class="code" href="v__base_8hh.html">v_base.hh</a>"</span></div>
|
|
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor">#include "<a class="code" href="cell_8hh.html">cell.hh</a>"</span></div>
|
|
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="preprocessor">#include "<a class="code" href="c__loops_8hh.html">c_loops.hh</a>"</span></div>
|
|
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="preprocessor">#include "<a class="code" href="v__compute_8hh.html">v_compute.hh</a>"</span></div>
|
|
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="preprocessor">#include "<a class="code" href="rad__option_8hh.html">rad_option.hh</a>"</span></div>
|
|
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> </div>
|
|
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="keyword">namespace </span>voro {</div>
|
|
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment"></span></div>
|
|
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">/** \brief Pure virtual class from which wall objects are derived.</span></div>
|
|
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment"> *</span></div>
|
|
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment"> * This is a pure virtual class for a generic wall object. A wall object</span></div>
|
|
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment"> * can be specified by deriving a new class from this and specifying the</span></div>
|
|
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment"> * functions.*/</span></div>
|
|
<div class="line"><a name="l00031"></a><span class="lineno"><a class="line" href="classvoro_1_1wall.html"> 31</a></span> <span class="keyword">class </span><a class="code" href="classvoro_1_1wall.html">wall</a> {</div>
|
|
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  <span class="keyword">public</span>:</div>
|
|
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span>  <span class="keyword">virtual</span> ~<a class="code" href="classvoro_1_1wall.html">wall</a>() {}<span class="comment"></span></div>
|
|
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="comment"> /** A pure virtual function for testing whether a point is</span></div>
|
|
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="comment"> * inside the wall object. */</span></div>
|
|
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  <span class="keyword">virtual</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1wall.html#ae49edf1ae1036be9ffaa5c2bd7fcd82d">point_inside</a>(<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z) = 0;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="comment"> /** A pure virtual function for cutting a cell without</span></div>
|
|
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="comment"> * neighbor-tracking with a wall. */</span></div>
|
|
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  <span class="keyword">virtual</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1wall.html#ab54b4c6d37223584f1fbf653d0b17d14">cut_cell</a>(<a class="code" href="classvoro_1_1voronoicell.html">voronoicell</a> &c,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z) = 0;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="comment"> /** A pure virtual function for cutting a cell with</span></div>
|
|
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="comment"> * neighbor-tracking enabled with a wall. */</span></div>
|
|
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  <span class="keyword">virtual</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1wall.html#ab54b4c6d37223584f1fbf653d0b17d14">cut_cell</a>(<a class="code" href="classvoro_1_1voronoicell__neighbor.html">voronoicell_neighbor</a> &c,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z) = 0;</div>
|
|
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> };</div>
|
|
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="comment"></span></div>
|
|
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="comment">/** \brief A class for storing a list of pointers to walls.</span></div>
|
|
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="comment"> *</span></div>
|
|
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="comment"> * This class stores a list of pointers to wall classes. It contains several</span></div>
|
|
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="comment"> * simple routines that make use of the wall classes (such as telling whether a</span></div>
|
|
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> <span class="comment"> * given position is inside all of the walls or not). It can be used by itself,</span></div>
|
|
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> <span class="comment"> * but also forms part of container_base, for associating walls with this</span></div>
|
|
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> <span class="comment"> * class. */</span></div>
|
|
<div class="line"><a name="l00052"></a><span class="lineno"><a class="line" href="classvoro_1_1wall__list.html"> 52</a></span> <span class="keyword">class </span><a class="code" href="classvoro_1_1wall__list.html">wall_list</a> {</div>
|
|
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  <span class="keyword">public</span>:<span class="comment"></span></div>
|
|
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> <span class="comment"> /** An array holding pointers to wall objects. */</span></div>
|
|
<div class="line"><a name="l00055"></a><span class="lineno"><a class="line" href="classvoro_1_1wall__list.html#abfc54768de5b596237d7eef5f589fe90"> 55</a></span>  <a class="code" href="classvoro_1_1wall.html">wall</a> **<a class="code" href="classvoro_1_1wall__list.html#abfc54768de5b596237d7eef5f589fe90">walls</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> <span class="comment"> /** A pointer to the next free position to add a wall pointer.</span></div>
|
|
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> <span class="comment"> */</span></div>
|
|
<div class="line"><a name="l00058"></a><span class="lineno"><a class="line" href="classvoro_1_1wall__list.html#abb48a3e29042c51cf48fa6a6b6c2dc1d"> 58</a></span>  <a class="code" href="classvoro_1_1wall.html">wall</a> **<a class="code" href="classvoro_1_1wall__list.html#abb48a3e29042c51cf48fa6a6b6c2dc1d">wep</a>;</div>
|
|
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  <a class="code" href="classvoro_1_1wall__list.html#a248fb5d008de9a5a97d4720d47794698">wall_list</a>();</div>
|
|
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  <a class="code" href="classvoro_1_1wall__list.html#a8b0402f2bfad31b7d0204d4120cd60be">~wall_list</a>();<span class="comment"></span></div>
|
|
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> <span class="comment"> /** Adds a wall to the list.</span></div>
|
|
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span> <span class="comment"> * \param[in] w the wall to add. */</span></div>
|
|
<div class="line"><a name="l00063"></a><span class="lineno"><a class="line" href="classvoro_1_1wall__list.html#aca50327f246b61f6aeef5337327d957d"> 63</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1wall__list.html#aca50327f246b61f6aeef5337327d957d">add_wall</a>(<a class="code" href="classvoro_1_1wall.html">wall</a> *w) {</div>
|
|
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1wall__list.html#abb48a3e29042c51cf48fa6a6b6c2dc1d">wep</a>==<a class="code" href="classvoro_1_1wall__list.html#a292491bc99b6bbc819bb3720fcfb08a1">wel</a>) <a class="code" href="classvoro_1_1wall__list.html#afb2cd60a3624dd4033ccddd690321489">increase_wall_memory</a>();</div>
|
|
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  *(<a class="code" href="classvoro_1_1wall__list.html#abb48a3e29042c51cf48fa6a6b6c2dc1d">wep</a>++)=w;</div>
|
|
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> <span class="comment"> /** Adds a wall to the list.</span></div>
|
|
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> <span class="comment"> * \param[in] w a reference to the wall to add. */</span></div>
|
|
<div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="classvoro_1_1wall__list.html#a8e3a5253fa0392bf0f8b7a84eb1b61d4"> 69</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1wall__list.html#a8e3a5253fa0392bf0f8b7a84eb1b61d4">add_wall</a>(<a class="code" href="classvoro_1_1wall.html">wall</a> &w) {<a class="code" href="classvoro_1_1wall__list.html#a8e3a5253fa0392bf0f8b7a84eb1b61d4">add_wall</a>(&w);}</div>
|
|
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1wall__list.html#aca50327f246b61f6aeef5337327d957d">add_wall</a>(<a class="code" href="classvoro_1_1wall__list.html">wall_list</a> &wl);<span class="comment"></span></div>
|
|
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> <span class="comment"> /** Determines whether a given position is inside all of the</span></div>
|
|
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> <span class="comment"> * walls on the list.</span></div>
|
|
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> <span class="comment"> * \param[in] (x,y,z) the position to test.</span></div>
|
|
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> <span class="comment"> * \return True if it is inside, false if it is outside. */</span></div>
|
|
<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="classvoro_1_1wall__list.html#ae6d83d60ffa99fb6712445616883d1c8"> 75</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1wall__list.html#ae6d83d60ffa99fb6712445616883d1c8">point_inside_walls</a>(<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z) {</div>
|
|
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  <span class="keywordflow">for</span>(<a class="code" href="classvoro_1_1wall.html">wall</a> **wp=<a class="code" href="classvoro_1_1wall__list.html#abfc54768de5b596237d7eef5f589fe90">walls</a>;wp<<a class="code" href="classvoro_1_1wall__list.html#abb48a3e29042c51cf48fa6a6b6c2dc1d">wep</a>;wp++) <span class="keywordflow">if</span>(!((*wp)->point_inside(x,y,z))) <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
|
|
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
|
|
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> <span class="comment"> /** Cuts a Voronoi cell by all of the walls currently on</span></div>
|
|
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> <span class="comment"> * the list.</span></div>
|
|
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span> <span class="comment"> * \param[in] c a reference to the Voronoi cell class.</span></div>
|
|
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span> <span class="comment"> * \param[in] (x,y,z) the position of the cell.</span></div>
|
|
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span> <span class="comment"> * \return True if the cell still exists, false if the cell is</span></div>
|
|
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> <span class="comment"> * deleted. */</span></div>
|
|
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_<span class="keyword">class</span>></div>
|
|
<div class="line"><a name="l00086"></a><span class="lineno"><a class="line" href="classvoro_1_1wall__list.html#ae3d367bca20c8d5714e2978ed67fe019"> 86</a></span>  <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1wall__list.html#ae3d367bca20c8d5714e2978ed67fe019">apply_walls</a>(c_class &c,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z) {</div>
|
|
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  <span class="keywordflow">for</span>(<a class="code" href="classvoro_1_1wall.html">wall</a> **wp=<a class="code" href="classvoro_1_1wall__list.html#abfc54768de5b596237d7eef5f589fe90">walls</a>;wp<<a class="code" href="classvoro_1_1wall__list.html#abb48a3e29042c51cf48fa6a6b6c2dc1d">wep</a>;wp++) <span class="keywordflow">if</span>(!((*wp)->cut_cell(c,x,y,z))) <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
|
|
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
|
|
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  }</div>
|
|
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1wall__list.html#a49c42b672f2eb7535c3b3564bb6cf51f">deallocate</a>();</div>
|
|
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  <span class="keyword">protected</span>:</div>
|
|
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1wall__list.html#afb2cd60a3624dd4033ccddd690321489">increase_wall_memory</a>();<span class="comment"></span></div>
|
|
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span> <span class="comment"> /** A pointer to the limit of the walls array, used to</span></div>
|
|
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span> <span class="comment"> * determine when array is full. */</span></div>
|
|
<div class="line"><a name="l00095"></a><span class="lineno"><a class="line" href="classvoro_1_1wall__list.html#a292491bc99b6bbc819bb3720fcfb08a1"> 95</a></span>  <a class="code" href="classvoro_1_1wall.html">wall</a> **<a class="code" href="classvoro_1_1wall__list.html#a292491bc99b6bbc819bb3720fcfb08a1">wel</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span> <span class="comment"> /** The current amount of memory allocated for walls. */</span></div>
|
|
<div class="line"><a name="l00097"></a><span class="lineno"><a class="line" href="classvoro_1_1wall__list.html#a8a06b6562bbf488ff30852cd1a548506"> 97</a></span>  <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1wall__list.html#a8a06b6562bbf488ff30852cd1a548506">current_wall_size</a>;</div>
|
|
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> };</div>
|
|
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span> <span class="comment"></span></div>
|
|
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span> <span class="comment">/** \brief Class for representing a particle system in a three-dimensional</span></div>
|
|
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span> <span class="comment"> * rectangular box.</span></div>
|
|
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span> <span class="comment"> *</span></div>
|
|
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> <span class="comment"> * This class represents a system of particles in a three-dimensional</span></div>
|
|
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> <span class="comment"> * rectangular box. Any combination of non-periodic and periodic coordinates</span></div>
|
|
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> <span class="comment"> * can be used in the three coordinate directions. The class is not intended</span></div>
|
|
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> <span class="comment"> * for direct use, but instead forms the base of the container and</span></div>
|
|
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span> <span class="comment"> * container_poly classes that add specialized routines for computing the</span></div>
|
|
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> <span class="comment"> * regular and radical Voronoi tessellations respectively. It contains routines</span></div>
|
|
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span> <span class="comment"> * that are commonly between these two classes, such as those for drawing the</span></div>
|
|
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span> <span class="comment"> * domain, and placing particles within the internal data structure.</span></div>
|
|
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span> <span class="comment"> *</span></div>
|
|
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> <span class="comment"> * The class is derived from the wall_list class, which encapsulates routines</span></div>
|
|
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span> <span class="comment"> * for associating walls with the container, and the voro_base class, which</span></div>
|
|
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span> <span class="comment"> * encapsulates routines about the underlying computational grid. */</span></div>
|
|
<div class="line"><a name="l00115"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html"> 115</a></span> <span class="keyword">class </span><a class="code" href="classvoro_1_1container__base.html">container_base</a> : <span class="keyword">public</span> <a class="code" href="classvoro_1_1voro__base.html">voro_base</a>, <span class="keyword">public</span> <a class="code" href="classvoro_1_1wall__list.html">wall_list</a> {</div>
|
|
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  <span class="keyword">public</span>:<span class="comment"></span></div>
|
|
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span> <span class="comment"> /** The minimum x coordinate of the container. */</span></div>
|
|
<div class="line"><a name="l00118"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#ab33ca2a8d7282d65a731d854d27906f2"> 118</a></span>  <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code" href="classvoro_1_1container__base.html#ab33ca2a8d7282d65a731d854d27906f2">ax</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span> <span class="comment"> /** The maximum x coordinate of the container. */</span></div>
|
|
<div class="line"><a name="l00120"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#afd9b8e6b3c6bb4376d1f755ef7ac789d"> 120</a></span>  <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code" href="classvoro_1_1container__base.html#afd9b8e6b3c6bb4376d1f755ef7ac789d">bx</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span> <span class="comment"> /** The minimum y coordinate of the container. */</span></div>
|
|
<div class="line"><a name="l00122"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#ab64ef06e1e257e83a33422a044ef9858"> 122</a></span>  <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code" href="classvoro_1_1container__base.html#ab64ef06e1e257e83a33422a044ef9858">ay</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span> <span class="comment"> /** The maximum y coordinate of the container. */</span></div>
|
|
<div class="line"><a name="l00124"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#ae769a416d7a5520eddf026cec6f7fda6"> 124</a></span>  <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code" href="classvoro_1_1container__base.html#ae769a416d7a5520eddf026cec6f7fda6">by</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span> <span class="comment"> /** The minimum z coordinate of the container. */</span></div>
|
|
<div class="line"><a name="l00126"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#a78d795a863e401a5fc565c7dec31b6a6"> 126</a></span>  <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code" href="classvoro_1_1container__base.html#a78d795a863e401a5fc565c7dec31b6a6">az</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span> <span class="comment"> /** The maximum z coordinate of the container. */</span></div>
|
|
<div class="line"><a name="l00128"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#a27de2088113bb64a4b045bea7c590be3"> 128</a></span>  <span class="keyword">const</span> <span class="keywordtype">double</span> <a class="code" href="classvoro_1_1container__base.html#a27de2088113bb64a4b045bea7c590be3">bz</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span> <span class="comment"> /** A boolean value that determines if the x coordinate in</span></div>
|
|
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span> <span class="comment"> * periodic or not. */</span></div>
|
|
<div class="line"><a name="l00131"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#a6734b7147a71bb7e2a4a313d4153bebf"> 131</a></span>  <span class="keyword">const</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__base.html#a6734b7147a71bb7e2a4a313d4153bebf">xperiodic</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span> <span class="comment"> /** A boolean value that determines if the y coordinate in</span></div>
|
|
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span> <span class="comment"> * periodic or not. */</span></div>
|
|
<div class="line"><a name="l00134"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#a05a979d24c3d0fefe9f5cd96174863f8"> 134</a></span>  <span class="keyword">const</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__base.html#a05a979d24c3d0fefe9f5cd96174863f8">yperiodic</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span> <span class="comment"> /** A boolean value that determines if the z coordinate in</span></div>
|
|
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span> <span class="comment"> * periodic or not. */</span></div>
|
|
<div class="line"><a name="l00137"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#acd3bdff20b8b11a3e606e5581ebf3c06"> 137</a></span>  <span class="keyword">const</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__base.html#acd3bdff20b8b11a3e606e5581ebf3c06">zperiodic</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span> <span class="comment"> /** This array holds the numerical IDs of each particle in each</span></div>
|
|
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span> <span class="comment"> * computational box. */</span></div>
|
|
<div class="line"><a name="l00140"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#a50de485630d0b693fb418be1726826a7"> 140</a></span>  <span class="keywordtype">int</span> **<a class="code" href="classvoro_1_1container__base.html#a50de485630d0b693fb418be1726826a7">id</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span> <span class="comment"> /** A two dimensional array holding particle positions. For the</span></div>
|
|
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span> <span class="comment"> * derived container_poly class, this also holds particle</span></div>
|
|
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span> <span class="comment"> * radii. */</span></div>
|
|
<div class="line"><a name="l00144"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5"> 144</a></span>  <span class="keywordtype">double</span> **<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span> <span class="comment"> /** This array holds the number of particles within each</span></div>
|
|
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span> <span class="comment"> * computational box of the container. */</span></div>
|
|
<div class="line"><a name="l00147"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#a987e612ffd2c459adf8c1784d308ef51"> 147</a></span>  <span class="keywordtype">int</span> *<a class="code" href="classvoro_1_1container__base.html#a987e612ffd2c459adf8c1784d308ef51">co</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span> <span class="comment"> /** This array holds the maximum amount of particle memory for</span></div>
|
|
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span> <span class="comment"> * each computational box of the container. If the number of</span></div>
|
|
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span> <span class="comment"> * particles in a particular box ever approaches this limit,</span></div>
|
|
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span> <span class="comment"> * more is allocated using the add_particle_memory() function.</span></div>
|
|
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span> <span class="comment"> */</span></div>
|
|
<div class="line"><a name="l00153"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#a633edc1737859a7dde8ca2e466e12cfe"> 153</a></span>  <span class="keywordtype">int</span> *<a class="code" href="classvoro_1_1container__base.html#a633edc1737859a7dde8ca2e466e12cfe">mem</a>;<span class="comment"></span></div>
|
|
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span> <span class="comment"> /** The amount of memory in the array structure for each</span></div>
|
|
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span> <span class="comment"> * particle. This is set to 3 when the basic class is</span></div>
|
|
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span> <span class="comment"> * initialized, so that the array holds (x,y,z) positions. If</span></div>
|
|
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span> <span class="comment"> * the container class is initialized as part of the derived</span></div>
|
|
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span> <span class="comment"> * class container_poly, then this is set to 4, to also hold</span></div>
|
|
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span> <span class="comment"> * the particle radii. */</span></div>
|
|
<div class="line"><a name="l00160"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#a235781536a17eab85b547787ff3618ba"> 160</a></span>  <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__base.html#a235781536a17eab85b547787ff3618ba">ps</a>;</div>
|
|
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  <a class="code" href="classvoro_1_1container__base.html#a2f7bde3ec593d9f4b8c9ceb67b56f62f">container_base</a>(<span class="keywordtype">double</span> ax_,<span class="keywordtype">double</span> bx_,<span class="keywordtype">double</span> ay_,<span class="keywordtype">double</span> by_,<span class="keywordtype">double</span> az_,<span class="keywordtype">double</span> bz_,</div>
|
|
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  <span class="keywordtype">int</span> nx_,<span class="keywordtype">int</span> ny_,<span class="keywordtype">int</span> nz_,<span class="keywordtype">bool</span> xperiodic_,<span class="keywordtype">bool</span> yperiodic_,<span class="keywordtype">bool</span> zperiodic_,</div>
|
|
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  <span class="keywordtype">int</span> init_mem,<span class="keywordtype">int</span> ps_);</div>
|
|
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  <a class="code" href="classvoro_1_1container__base.html#a624a890b979cc8f989778e0b627bad44">~container_base</a>();</div>
|
|
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__base.html#a290c21ba694d02231d49d14881dfcfd1">point_inside</a>(<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z);</div>
|
|
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__base.html#ac1205c5c189d3dd72057c4cf9fa8891d">region_count</a>();<span class="comment"></span></div>
|
|
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span> <span class="comment"> /** Initializes the Voronoi cell prior to a compute_cell</span></div>
|
|
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span> <span class="comment"> * operation for a specific particle being carried out by a</span></div>
|
|
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span> <span class="comment"> * voro_compute class. The cell is initialized to fill the</span></div>
|
|
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span> <span class="comment"> * entire container. For non-periodic coordinates, this is set</span></div>
|
|
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span> <span class="comment"> * by the position of the walls. For periodic coordinates, the</span></div>
|
|
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span> <span class="comment"> * space is equally divided in either direction from the</span></div>
|
|
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span> <span class="comment"> * particle's initial position. Plane cuts made by any walls</span></div>
|
|
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span> <span class="comment"> * that have been added are then applied to the cell.</span></div>
|
|
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span> <span class="comment"> * \param[in,out] c a reference to a voronoicell object.</span></div>
|
|
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span> <span class="comment"> * \param[in] ijk the block that the particle is within.</span></div>
|
|
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span> <span class="comment"> * \param[in] q the index of the particle within its block.</span></div>
|
|
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span> <span class="comment"> * \param[in] (ci,cj,ck) the coordinates of the block in the</span></div>
|
|
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span> <span class="comment"> * container coordinate system.</span></div>
|
|
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span> <span class="comment"> * \param[out] (i,j,k) the coordinates of the test block</span></div>
|
|
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span> <span class="comment"> * relative to the voro_compute</span></div>
|
|
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span> <span class="comment"> * coordinate system.</span></div>
|
|
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span> <span class="comment"> * \param[out] (x,y,z) the position of the particle.</span></div>
|
|
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span> <span class="comment"> * \param[out] disp a block displacement used internally by the</span></div>
|
|
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span> <span class="comment"> * compute_cell routine.</span></div>
|
|
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span> <span class="comment"> * \return False if the plane cuts applied by walls completely</span></div>
|
|
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span> <span class="comment"> * removed the cell, true otherwise. */</span></div>
|
|
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell></div>
|
|
<div class="line"><a name="l00189"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#af6d18399db1c92816296bc70af8440b5"> 189</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__base.html#af6d18399db1c92816296bc70af8440b5">initialize_voronoicell</a>(v_cell &c,<span class="keywordtype">int</span> ijk,<span class="keywordtype">int</span> q,<span class="keywordtype">int</span> ci,<span class="keywordtype">int</span> cj,<span class="keywordtype">int</span> ck,</div>
|
|
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  <span class="keywordtype">int</span> &i,<span class="keywordtype">int</span> &j,<span class="keywordtype">int</span> &k,<span class="keywordtype">double</span> &x,<span class="keywordtype">double</span> &y,<span class="keywordtype">double</span> &z,<span class="keywordtype">int</span> &disp) {</div>
|
|
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <span class="keywordtype">double</span> x1,x2,y1,y2,z1,z2,*pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[ijk]+<a class="code" href="classvoro_1_1container__base.html#a235781536a17eab85b547787ff3618ba">ps</a>*q;</div>
|
|
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  x=*(pp++);y=*(pp++);z=*pp;</div>
|
|
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__base.html#a6734b7147a71bb7e2a4a313d4153bebf">xperiodic</a>) {x1=-(x2=0.5*(<a class="code" href="classvoro_1_1container__base.html#afd9b8e6b3c6bb4376d1f755ef7ac789d">bx</a>-<a class="code" href="classvoro_1_1container__base.html#ab33ca2a8d7282d65a731d854d27906f2">ax</a>));i=<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>;} <span class="keywordflow">else</span> {x1=<a class="code" href="classvoro_1_1container__base.html#ab33ca2a8d7282d65a731d854d27906f2">ax</a>-x;x2=<a class="code" href="classvoro_1_1container__base.html#afd9b8e6b3c6bb4376d1f755ef7ac789d">bx</a>-x;i=ci;}</div>
|
|
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__base.html#a05a979d24c3d0fefe9f5cd96174863f8">yperiodic</a>) {y1=-(y2=0.5*(<a class="code" href="classvoro_1_1container__base.html#ae769a416d7a5520eddf026cec6f7fda6">by</a>-<a class="code" href="classvoro_1_1container__base.html#ab64ef06e1e257e83a33422a044ef9858">ay</a>));j=<a class="code" href="classvoro_1_1voro__base.html#a83da5297e87173733d92d9024cebbbdb">ny</a>;} <span class="keywordflow">else</span> {y1=<a class="code" href="classvoro_1_1container__base.html#ab64ef06e1e257e83a33422a044ef9858">ay</a>-y;y2=<a class="code" href="classvoro_1_1container__base.html#ae769a416d7a5520eddf026cec6f7fda6">by</a>-y;j=cj;}</div>
|
|
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__base.html#acd3bdff20b8b11a3e606e5581ebf3c06">zperiodic</a>) {z1=-(z2=0.5*(<a class="code" href="classvoro_1_1container__base.html#a27de2088113bb64a4b045bea7c590be3">bz</a>-<a class="code" href="classvoro_1_1container__base.html#a78d795a863e401a5fc565c7dec31b6a6">az</a>));k=<a class="code" href="classvoro_1_1voro__base.html#aae461fbdf42c8975fb43d963d002298f">nz</a>;} <span class="keywordflow">else</span> {z1=<a class="code" href="classvoro_1_1container__base.html#a78d795a863e401a5fc565c7dec31b6a6">az</a>-z;z2=<a class="code" href="classvoro_1_1container__base.html#a27de2088113bb64a4b045bea7c590be3">bz</a>-z;k=ck;}</div>
|
|
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  c.init(x1,x2,y1,y2,z1,z2);</div>
|
|
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  <span class="keywordflow">if</span>(!<a class="code" href="classvoro_1_1wall__list.html#ae3d367bca20c8d5714e2978ed67fe019">apply_walls</a>(c,x,y,z)) <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
|
|
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  disp=ijk-i-<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>*(j+<a class="code" href="classvoro_1_1voro__base.html#a83da5297e87173733d92d9024cebbbdb">ny</a>*k);</div>
|
|
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
|
|
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span> <span class="comment"> /** Initializes parameters for a find_voronoi_cell call within</span></div>
|
|
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span> <span class="comment"> * the voro_compute template.</span></div>
|
|
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span> <span class="comment"> * \param[in] (ci,cj,ck) the coordinates of the test block in</span></div>
|
|
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span> <span class="comment"> * the container coordinate system.</span></div>
|
|
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span> <span class="comment"> * \param[in] ijk the index of the test block</span></div>
|
|
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span> <span class="comment"> * \param[out] (i,j,k) the coordinates of the test block</span></div>
|
|
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span> <span class="comment"> * relative to the voro_compute</span></div>
|
|
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span> <span class="comment"> * coordinate system.</span></div>
|
|
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span> <span class="comment"> * \param[out] disp a block displacement used internally by the</span></div>
|
|
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span> <span class="comment"> * find_voronoi_cell routine. */</span></div>
|
|
<div class="line"><a name="l00211"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#a30dbb059792c199f2526c13990cd8daf"> 211</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__base.html#a30dbb059792c199f2526c13990cd8daf">initialize_search</a>(<span class="keywordtype">int</span> ci,<span class="keywordtype">int</span> cj,<span class="keywordtype">int</span> ck,<span class="keywordtype">int</span> ijk,<span class="keywordtype">int</span> &i,<span class="keywordtype">int</span> &j,<span class="keywordtype">int</span> &k,<span class="keywordtype">int</span> &disp) {</div>
|
|
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  i=<a class="code" href="classvoro_1_1container__base.html#a6734b7147a71bb7e2a4a313d4153bebf">xperiodic</a>?<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>:ci;</div>
|
|
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  j=<a class="code" href="classvoro_1_1container__base.html#a05a979d24c3d0fefe9f5cd96174863f8">yperiodic</a>?<a class="code" href="classvoro_1_1voro__base.html#a83da5297e87173733d92d9024cebbbdb">ny</a>:cj;</div>
|
|
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  k=<a class="code" href="classvoro_1_1container__base.html#acd3bdff20b8b11a3e606e5581ebf3c06">zperiodic</a>?<a class="code" href="classvoro_1_1voro__base.html#aae461fbdf42c8975fb43d963d002298f">nz</a>:ck;</div>
|
|
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  disp=ijk-i-<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>*(j+<a class="code" href="classvoro_1_1voro__base.html#a83da5297e87173733d92d9024cebbbdb">ny</a>*k);</div>
|
|
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span> <span class="comment"> /** Returns the position of a particle currently being computed</span></div>
|
|
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span> <span class="comment"> * relative to the computational block that it is within. It is</span></div>
|
|
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span> <span class="comment"> * used to select the optimal worklist entry to use.</span></div>
|
|
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span> <span class="comment"> * \param[in] (x,y,z) the position of the particle.</span></div>
|
|
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span> <span class="comment"> * \param[in] (ci,cj,ck) the block that the particle is within.</span></div>
|
|
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span> <span class="comment"> * \param[out] (fx,fy,fz) the position relative to the block.</span></div>
|
|
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span> <span class="comment"> */</span></div>
|
|
<div class="line"><a name="l00224"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#a08db44d4d57b8b19f1e101cc40c82e85"> 224</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__base.html#a08db44d4d57b8b19f1e101cc40c82e85">frac_pos</a>(<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">double</span> ci,<span class="keywordtype">double</span> cj,<span class="keywordtype">double</span> ck,</div>
|
|
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  <span class="keywordtype">double</span> &fx,<span class="keywordtype">double</span> &fy,<span class="keywordtype">double</span> &fz) {</div>
|
|
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  fx=x-<a class="code" href="classvoro_1_1container__base.html#ab33ca2a8d7282d65a731d854d27906f2">ax</a>-<a class="code" href="classvoro_1_1voro__base.html#ac8986e621bd70cf5113e231cb8694d37">boxx</a>*ci;</div>
|
|
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  fy=y-<a class="code" href="classvoro_1_1container__base.html#ab64ef06e1e257e83a33422a044ef9858">ay</a>-<a class="code" href="classvoro_1_1voro__base.html#a3ad6b0eefbdff03e92d30f5035defdd1">boxy</a>*cj;</div>
|
|
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  fz=z-<a class="code" href="classvoro_1_1container__base.html#a78d795a863e401a5fc565c7dec31b6a6">az</a>-<a class="code" href="classvoro_1_1voro__base.html#afd53f018c9641c8b8066e9429c88a4e0">boxz</a>*ck;</div>
|
|
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span> <span class="comment"> /** Calculates the index of block in the container structure</span></div>
|
|
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span> <span class="comment"> * corresponding to given coordinates.</span></div>
|
|
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span> <span class="comment"> * \param[in] (ci,cj,ck) the coordinates of the original block</span></div>
|
|
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span> <span class="comment"> * in the current computation, relative</span></div>
|
|
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span> <span class="comment"> * to the container coordinate system.</span></div>
|
|
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span> <span class="comment"> * \param[in] (ei,ej,ek) the displacement of the current block</span></div>
|
|
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span> <span class="comment"> * from the original block.</span></div>
|
|
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span> <span class="comment"> * \param[in,out] (qx,qy,qz) the periodic displacement that</span></div>
|
|
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span> <span class="comment"> * must be added to the particles</span></div>
|
|
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span> <span class="comment"> * within the computed block.</span></div>
|
|
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span> <span class="comment"> * \param[in] disp a block displacement used internally by the</span></div>
|
|
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span> <span class="comment"> * find_voronoi_cell and compute_cell routines.</span></div>
|
|
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span> <span class="comment"> * \return The block index. */</span></div>
|
|
<div class="line"><a name="l00243"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#a76b645960fba43620e096b7bdf178603"> 243</a></span>  <span class="keyword">inline</span> <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__base.html#a76b645960fba43620e096b7bdf178603">region_index</a>(<span class="keywordtype">int</span> ci,<span class="keywordtype">int</span> cj,<span class="keywordtype">int</span> ck,<span class="keywordtype">int</span> ei,<span class="keywordtype">int</span> ej,<span class="keywordtype">int</span> ek,<span class="keywordtype">double</span> &qx,<span class="keywordtype">double</span> &qy,<span class="keywordtype">double</span> &qz,<span class="keywordtype">int</span> &disp) {</div>
|
|
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__base.html#a6734b7147a71bb7e2a4a313d4153bebf">xperiodic</a>) {<span class="keywordflow">if</span>(ci+ei<<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>) {ei+=<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>;qx=-(<a class="code" href="classvoro_1_1container__base.html#afd9b8e6b3c6bb4376d1f755ef7ac789d">bx</a>-<a class="code" href="classvoro_1_1container__base.html#ab33ca2a8d7282d65a731d854d27906f2">ax</a>);} <span class="keywordflow">else</span> <span class="keywordflow">if</span>(ci+ei>=(<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a><<1)) {ei-=<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>;qx=<a class="code" href="classvoro_1_1container__base.html#afd9b8e6b3c6bb4376d1f755ef7ac789d">bx</a>-<a class="code" href="classvoro_1_1container__base.html#ab33ca2a8d7282d65a731d854d27906f2">ax</a>;} <span class="keywordflow">else</span> qx=0;}</div>
|
|
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__base.html#a05a979d24c3d0fefe9f5cd96174863f8">yperiodic</a>) {<span class="keywordflow">if</span>(cj+ej<<a class="code" href="classvoro_1_1voro__base.html#a83da5297e87173733d92d9024cebbbdb">ny</a>) {ej+=<a class="code" href="classvoro_1_1voro__base.html#a83da5297e87173733d92d9024cebbbdb">ny</a>;qy=-(<a class="code" href="classvoro_1_1container__base.html#ae769a416d7a5520eddf026cec6f7fda6">by</a>-<a class="code" href="classvoro_1_1container__base.html#ab64ef06e1e257e83a33422a044ef9858">ay</a>);} <span class="keywordflow">else</span> <span class="keywordflow">if</span>(cj+ej>=(<a class="code" href="classvoro_1_1voro__base.html#a83da5297e87173733d92d9024cebbbdb">ny</a><<1)) {ej-=<a class="code" href="classvoro_1_1voro__base.html#a83da5297e87173733d92d9024cebbbdb">ny</a>;qy=<a class="code" href="classvoro_1_1container__base.html#ae769a416d7a5520eddf026cec6f7fda6">by</a>-<a class="code" href="classvoro_1_1container__base.html#ab64ef06e1e257e83a33422a044ef9858">ay</a>;} <span class="keywordflow">else</span> qy=0;}</div>
|
|
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__base.html#acd3bdff20b8b11a3e606e5581ebf3c06">zperiodic</a>) {<span class="keywordflow">if</span>(ck+ek<<a class="code" href="classvoro_1_1voro__base.html#aae461fbdf42c8975fb43d963d002298f">nz</a>) {ek+=<a class="code" href="classvoro_1_1voro__base.html#aae461fbdf42c8975fb43d963d002298f">nz</a>;qz=-(<a class="code" href="classvoro_1_1container__base.html#a27de2088113bb64a4b045bea7c590be3">bz</a>-<a class="code" href="classvoro_1_1container__base.html#a78d795a863e401a5fc565c7dec31b6a6">az</a>);} <span class="keywordflow">else</span> <span class="keywordflow">if</span>(ck+ek>=(<a class="code" href="classvoro_1_1voro__base.html#aae461fbdf42c8975fb43d963d002298f">nz</a><<1)) {ek-=<a class="code" href="classvoro_1_1voro__base.html#aae461fbdf42c8975fb43d963d002298f">nz</a>;qz=<a class="code" href="classvoro_1_1container__base.html#a27de2088113bb64a4b045bea7c590be3">bz</a>-<a class="code" href="classvoro_1_1container__base.html#a78d795a863e401a5fc565c7dec31b6a6">az</a>;} <span class="keywordflow">else</span> qz=0;}</div>
|
|
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  <span class="keywordflow">return</span> disp+ei+<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>*(ej+<a class="code" href="classvoro_1_1voro__base.html#a83da5297e87173733d92d9024cebbbdb">ny</a>*ek);</div>
|
|
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  }</div>
|
|
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__base.html#a67dbf4a79fac8527ccee72d881c6654d">draw_domain_gnuplot</a>(FILE *fp=stdout);<span class="comment"></span></div>
|
|
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span> <span class="comment"> /** Draws an outline of the domain in Gnuplot format.</span></div>
|
|
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span> <span class="comment"> * \param[in] filename the filename to write to. */</span></div>
|
|
<div class="line"><a name="l00252"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#a019db0a854b71ac57886155422bb53d6"> 252</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__base.html#a019db0a854b71ac57886155422bb53d6">draw_domain_gnuplot</a>(<span class="keyword">const</span> <span class="keywordtype">char</span>* filename) {</div>
|
|
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
|
|
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  <a class="code" href="classvoro_1_1container__base.html#a67dbf4a79fac8527ccee72d881c6654d">draw_domain_gnuplot</a>(fp);</div>
|
|
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  }</div>
|
|
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__base.html#a6ff9d18058ab53c955cd44dea733e4fd">draw_domain_pov</a>(FILE *fp=stdout);<span class="comment"></span></div>
|
|
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span> <span class="comment"> /** Draws an outline of the domain in Gnuplot format.</span></div>
|
|
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span> <span class="comment"> * \param[in] filename the filename to write to. */</span></div>
|
|
<div class="line"><a name="l00260"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#aa1c0c293bae52c879eb42035a031d8e8"> 260</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__base.html#aa1c0c293bae52c879eb42035a031d8e8">draw_domain_pov</a>(<span class="keyword">const</span> <span class="keywordtype">char</span>* filename) {</div>
|
|
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
|
|
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  <a class="code" href="classvoro_1_1container__base.html#a6ff9d18058ab53c955cd44dea733e4fd">draw_domain_pov</a>(fp);</div>
|
|
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span> <span class="comment"> /** Sums up the total number of stored particles.</span></div>
|
|
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span> <span class="comment"> * \return The number of particles. */</span></div>
|
|
<div class="line"><a name="l00267"></a><span class="lineno"><a class="line" href="classvoro_1_1container__base.html#ad9fe437b46f1e58908c393955e6d4217"> 267</a></span>  <span class="keyword">inline</span> <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__base.html#ad9fe437b46f1e58908c393955e6d4217">total_particles</a>() {</div>
|
|
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  <span class="keywordtype">int</span> tp=*<a class="code" href="classvoro_1_1container__base.html#a987e612ffd2c459adf8c1784d308ef51">co</a>;</div>
|
|
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  <span class="keywordflow">for</span>(<span class="keywordtype">int</span> *cop=<a class="code" href="classvoro_1_1container__base.html#a987e612ffd2c459adf8c1784d308ef51">co</a>+1;cop<<a class="code" href="classvoro_1_1container__base.html#a987e612ffd2c459adf8c1784d308ef51">co</a>+<a class="code" href="classvoro_1_1voro__base.html#a4309aca04ab561bd3b3921e9b73016a4">nxyz</a>;cop++) tp+=*cop;</div>
|
|
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <span class="keywordflow">return</span> tp;</div>
|
|
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  }</div>
|
|
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <span class="keyword">protected</span>:</div>
|
|
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__base.html#aa0fe8c92c66463236a05924d466256da">add_particle_memory</a>(<span class="keywordtype">int</span> i);</div>
|
|
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__base.html#a1ab1b31f6fcd3080cc9fd0948df61e1a">put_locate_block</a>(<span class="keywordtype">int</span> &ijk,<span class="keywordtype">double</span> &x,<span class="keywordtype">double</span> &y,<span class="keywordtype">double</span> &z);</div>
|
|
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__base.html#af070c53156c75171a13dacb2ef2148aa">put_remap</a>(<span class="keywordtype">int</span> &ijk,<span class="keywordtype">double</span> &x,<span class="keywordtype">double</span> &y,<span class="keywordtype">double</span> &z);</div>
|
|
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__base.html#abe09747feba40102470c91f93d25fbfc">remap</a>(<span class="keywordtype">int</span> &ai,<span class="keywordtype">int</span> &aj,<span class="keywordtype">int</span> &ak,<span class="keywordtype">int</span> &ci,<span class="keywordtype">int</span> &cj,<span class="keywordtype">int</span> &ck,<span class="keywordtype">double</span> &x,<span class="keywordtype">double</span> &y,<span class="keywordtype">double</span> &z,<span class="keywordtype">int</span> &ijk);</div>
|
|
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span> };</div>
|
|
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span> <span class="comment"></span></div>
|
|
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span> <span class="comment">/** \brief Extension of the container_base class for computing regular Voronoi</span></div>
|
|
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span> <span class="comment"> * tessellations.</span></div>
|
|
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span> <span class="comment"> *</span></div>
|
|
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span> <span class="comment"> * This class is an extension of the container_base class that has routines</span></div>
|
|
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span> <span class="comment"> * specifically for computing the regular Voronoi tessellation with no</span></div>
|
|
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span> <span class="comment"> * dependence on particle radii. */</span></div>
|
|
<div class="line"><a name="l00285"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html"> 285</a></span> <span class="keyword">class </span><a class="code" href="classvoro_1_1container.html">container</a> : <span class="keyword">public</span> <a class="code" href="classvoro_1_1container__base.html">container_base</a>, <span class="keyword">public</span> <a class="code" href="classvoro_1_1radius__mono.html">radius_mono</a> {</div>
|
|
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <span class="keyword">public</span>:</div>
|
|
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  <a class="code" href="classvoro_1_1container.html#a50aaf382a069b102930b88976215818f">container</a>(<span class="keywordtype">double</span> ax_,<span class="keywordtype">double</span> bx_,<span class="keywordtype">double</span> ay_,<span class="keywordtype">double</span> by_,<span class="keywordtype">double</span> az_,<span class="keywordtype">double</span> bz_,</div>
|
|
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  <span class="keywordtype">int</span> nx_,<span class="keywordtype">int</span> ny_,<span class="keywordtype">int</span> nz_,<span class="keywordtype">bool</span> xperiodic_,<span class="keywordtype">bool</span> yperiodic_,<span class="keywordtype">bool</span> zperiodic_,<span class="keywordtype">int</span> init_mem);</div>
|
|
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#a0890eac6d9f02b8d7b8e41a8a98ff2ee">clear</a>();</div>
|
|
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#a5c67c9998e4f174fb217967dcb41c7f3">put</a>(<span class="keywordtype">int</span> n,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z);</div>
|
|
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#a5c67c9998e4f174fb217967dcb41c7f3">put</a>(<a class="code" href="classvoro_1_1particle__order.html">particle_order</a> &vo,<span class="keywordtype">int</span> n,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z);</div>
|
|
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  <span class="keywordtype">void</span> <span class="keyword">import</span>(FILE *fp=stdin);</div>
|
|
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  <span class="keywordtype">void</span> <span class="keyword">import</span>(<a class="code" href="classvoro_1_1particle__order.html">particle_order</a> &vo,FILE *fp=stdin);<span class="comment"></span></div>
|
|
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span> <span class="comment"> /** Imports a list of particles from an open file stream into</span></div>
|
|
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span> <span class="comment"> * the container. Entries of four numbers (Particle ID, x</span></div>
|
|
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span> <span class="comment"> * position, y position, z position) are searched for. If the</span></div>
|
|
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span> <span class="comment"> * file cannot be successfully read, then the routine causes a</span></div>
|
|
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span> <span class="comment"> * fatal error.</span></div>
|
|
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span> <span class="comment"> * \param[in] filename the name of the file to open and read</span></div>
|
|
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span> <span class="comment"> * from. */</span></div>
|
|
<div class="line"><a name="l00301"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#a74d328c0a3f574668ff5dd9e34d22f1f"> 301</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <span class="keyword">import</span>(<span class="keyword">const</span> <span class="keywordtype">char</span>* filename) {</div>
|
|
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"r"</span>);</div>
|
|
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  <span class="keyword">import</span>(fp);</div>
|
|
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span> <span class="comment"> /** Imports a list of particles from an open file stream into</span></div>
|
|
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span> <span class="comment"> * the container. Entries of four numbers (Particle ID, x</span></div>
|
|
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span> <span class="comment"> * position, y position, z position) are searched for. In</span></div>
|
|
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span> <span class="comment"> * addition, the order in which particles are read is saved</span></div>
|
|
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span> <span class="comment"> * into an ordering class. If the file cannot be successfully</span></div>
|
|
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span> <span class="comment"> * read, then the routine causes a fatal error.</span></div>
|
|
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span> <span class="comment"> * \param[in,out] vo the ordering class to use.</span></div>
|
|
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span> <span class="comment"> * \param[in] filename the name of the file to open and read</span></div>
|
|
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span> <span class="comment"> * from. */</span></div>
|
|
<div class="line"><a name="l00315"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#acd9da3dc12eecccd5db8af5ff111222c"> 315</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <span class="keyword">import</span>(<a class="code" href="classvoro_1_1particle__order.html">particle_order</a> &vo,<span class="keyword">const</span> <span class="keywordtype">char</span>* filename) {</div>
|
|
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"r"</span>);</div>
|
|
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  <span class="keyword">import</span>(vo,fp);</div>
|
|
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  }</div>
|
|
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#a2757cfc62be2f0496eddd0fccbc14ba6">compute_all_cells</a>();</div>
|
|
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  <span class="keywordtype">double</span> <a class="code" href="classvoro_1_1container.html#accce43f61281a3c5d69893ad5187e3ec">sum_cell_volumes</a>();<span class="comment"></span></div>
|
|
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span> <span class="comment"> /** Dumps particle IDs and positions to a file.</span></div>
|
|
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00326"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#a39c6928b9e5d4351b01df6bbd4b8b72c"> 326</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#a39c6928b9e5d4351b01df6bbd4b8b72c">draw_particles</a>(c_loop &vl,FILE *fp) {</div>
|
|
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  <span class="keywordtype">double</span> *pp;</div>
|
|
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> {</div>
|
|
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[vl.ijk]+3*vl.q;</div>
|
|
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  fprintf(fp,<span class="stringliteral">"%d %g %g %g\n"</span>,<span class="keywordtype">id</span>[vl.ijk][vl.q],*pp,pp[1],pp[2]);</div>
|
|
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span> <span class="comment"> /** Dumps all of the particle IDs and positions to a file.</span></div>
|
|
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00335"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#acf0d0e3a7cfb9c7445e99afc57dbee94"> 335</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#acf0d0e3a7cfb9c7445e99afc57dbee94">draw_particles</a>(FILE *fp=stdout) {</div>
|
|
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  <a class="code" href="classvoro_1_1c__loop__all.html">c_loop_all</a> vl(*<span class="keyword">this</span>);</div>
|
|
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  <a class="code" href="classvoro_1_1container.html#a39c6928b9e5d4351b01df6bbd4b8b72c">draw_particles</a>(vl,fp);</div>
|
|
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span> <span class="comment"> /** Dumps all of the particle IDs and positions to a file.</span></div>
|
|
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
|
|
<div class="line"><a name="l00341"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#a4c5ac89711659787eba011afbee318be"> 341</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#a4c5ac89711659787eba011afbee318be">draw_particles</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
|
|
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
|
|
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  <a class="code" href="classvoro_1_1container.html#a39c6928b9e5d4351b01df6bbd4b8b72c">draw_particles</a>(fp);</div>
|
|
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span> <span class="comment"> /** Dumps particle positions in POV-Ray format.</span></div>
|
|
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00350"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#a4bfde4e186de8a12fbb5b5d7f16f9387"> 350</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#a4bfde4e186de8a12fbb5b5d7f16f9387">draw_particles_pov</a>(c_loop &vl,FILE *fp) {</div>
|
|
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  <span class="keywordtype">double</span> *pp;</div>
|
|
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> {</div>
|
|
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[vl.ijk]+3*vl.q;</div>
|
|
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  fprintf(fp,<span class="stringliteral">"// id %d\nsphere{<%g,%g,%g>,s}\n"</span>,</div>
|
|
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span>  <span class="keywordtype">id</span>[vl.ijk][vl.q],*pp,pp[1],pp[2]);</div>
|
|
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span> <span class="comment"> /** Dumps all particle positions in POV-Ray format.</span></div>
|
|
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00360"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#adaebc99132288ce43dab36fe86b5497b"> 360</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#adaebc99132288ce43dab36fe86b5497b">draw_particles_pov</a>(FILE *fp=stdout) {</div>
|
|
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  <a class="code" href="classvoro_1_1c__loop__all.html">c_loop_all</a> vl(*<span class="keyword">this</span>);</div>
|
|
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  <a class="code" href="classvoro_1_1container.html#a4bfde4e186de8a12fbb5b5d7f16f9387">draw_particles_pov</a>(vl,fp);</div>
|
|
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span> <span class="comment"> /** Dumps all particle positions in POV-Ray format.</span></div>
|
|
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
|
|
<div class="line"><a name="l00366"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#ad90375e99cea7db7c1b82d00853e2659"> 366</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#ad90375e99cea7db7c1b82d00853e2659">draw_particles_pov</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
|
|
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
|
|
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  <a class="code" href="classvoro_1_1container.html#a4bfde4e186de8a12fbb5b5d7f16f9387">draw_particles_pov</a>(fp);</div>
|
|
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span> <span class="comment"> /** Computes Voronoi cells and saves the output in gnuplot</span></div>
|
|
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00376"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#a13bc3a19033255fb04049288c7cd5818"> 376</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#a13bc3a19033255fb04049288c7cd5818">draw_cells_gnuplot</a>(c_loop &vl,FILE *fp) {</div>
|
|
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  <a class="code" href="classvoro_1_1voronoicell.html">voronoicell</a> c;<span class="keywordtype">double</span> *pp;</div>
|
|
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container.html#a9808b60d80f1d3ccc06ebd0a2495ac7a">compute_cell</a>(c,vl)) {</div>
|
|
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[vl.ijk]+<a class="code" href="classvoro_1_1container__base.html#a235781536a17eab85b547787ff3618ba">ps</a>*vl.q;</div>
|
|
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a1c0657c1d89313089bbd437170c97d46">draw_gnuplot</a>(*pp,pp[1],pp[2],fp);</div>
|
|
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span> <span class="comment"> /** Computes all Voronoi cells and saves the output in gnuplot</span></div>
|
|
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00386"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#a5812915614c26d5e52697902556ed996"> 386</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#a5812915614c26d5e52697902556ed996">draw_cells_gnuplot</a>(FILE *fp=stdout) {</div>
|
|
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  <a class="code" href="classvoro_1_1c__loop__all.html">c_loop_all</a> vl(*<span class="keyword">this</span>);</div>
|
|
<div class="line"><a name="l00388"></a><span class="lineno"> 388</span>  <a class="code" href="classvoro_1_1container.html#a13bc3a19033255fb04049288c7cd5818">draw_cells_gnuplot</a>(vl,fp);</div>
|
|
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span> <span class="comment"> /** Computes all Voronoi cells and saves the output in gnuplot</span></div>
|
|
<div class="line"><a name="l00391"></a><span class="lineno"> 391</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
|
|
<div class="line"><a name="l00393"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#aa387c1b649fe6eabafe4546ae7410c6b"> 393</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#aa387c1b649fe6eabafe4546ae7410c6b">draw_cells_gnuplot</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
|
|
<div class="line"><a name="l00394"></a><span class="lineno"> 394</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
|
|
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  <a class="code" href="classvoro_1_1container.html#a13bc3a19033255fb04049288c7cd5818">draw_cells_gnuplot</a>(fp);</div>
|
|
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00397"></a><span class="lineno"> 397</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span> <span class="comment"> /** Computes Voronoi cells and saves the output in POV-Ray</span></div>
|
|
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00400"></a><span class="lineno"> 400</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00403"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#af39b3d55e12a5b1d6acbab77d762cff3"> 403</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#af39b3d55e12a5b1d6acbab77d762cff3">draw_cells_pov</a>(c_loop &vl,FILE *fp) {</div>
|
|
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  <a class="code" href="classvoro_1_1voronoicell.html">voronoicell</a> c;<span class="keywordtype">double</span> *pp;</div>
|
|
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container.html#a9808b60d80f1d3ccc06ebd0a2495ac7a">compute_cell</a>(c,vl)) {</div>
|
|
<div class="line"><a name="l00406"></a><span class="lineno"> 406</span>  fprintf(fp,<span class="stringliteral">"// cell %d\n"</span>,<span class="keywordtype">id</span>[vl.ijk][vl.q]);</div>
|
|
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span>  pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[vl.ijk]+<a class="code" href="classvoro_1_1container__base.html#a235781536a17eab85b547787ff3618ba">ps</a>*vl.q;</div>
|
|
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a923ffa62bd5d62070cd29e01f3a1327a">draw_pov</a>(*pp,pp[1],pp[2],fp);</div>
|
|
<div class="line"><a name="l00409"></a><span class="lineno"> 409</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00410"></a><span class="lineno"> 410</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span> <span class="comment"> /** Computes all Voronoi cells and saves the output in POV-Ray</span></div>
|
|
<div class="line"><a name="l00412"></a><span class="lineno"> 412</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00414"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#ac6ec5c8fec1cec5185af19bb21832fcb"> 414</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#ac6ec5c8fec1cec5185af19bb21832fcb">draw_cells_pov</a>(FILE *fp=stdout) {</div>
|
|
<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  <a class="code" href="classvoro_1_1c__loop__all.html">c_loop_all</a> vl(*<span class="keyword">this</span>);</div>
|
|
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  <a class="code" href="classvoro_1_1container.html#af39b3d55e12a5b1d6acbab77d762cff3">draw_cells_pov</a>(vl,fp);</div>
|
|
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00418"></a><span class="lineno"> 418</span> <span class="comment"> /** Computes all Voronoi cells and saves the output in POV-Ray</span></div>
|
|
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
|
|
<div class="line"><a name="l00421"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#a3f9a6147040c60ff579dcd96c05800c9"> 421</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#a3f9a6147040c60ff579dcd96c05800c9">draw_cells_pov</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
|
|
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
|
|
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  <a class="code" href="classvoro_1_1container.html#af39b3d55e12a5b1d6acbab77d762cff3">draw_cells_pov</a>(fp);</div>
|
|
<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00425"></a><span class="lineno"> 425</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00426"></a><span class="lineno"> 426</span> <span class="comment"> /** Computes the Voronoi cells and saves customized information</span></div>
|
|
<div class="line"><a name="l00427"></a><span class="lineno"> 427</span> <span class="comment"> * about them.</span></div>
|
|
<div class="line"><a name="l00428"></a><span class="lineno"> 428</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00429"></a><span class="lineno"> 429</span> <span class="comment"> * \param[in] format the custom output string to use.</span></div>
|
|
<div class="line"><a name="l00430"></a><span class="lineno"> 430</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00431"></a><span class="lineno"> 431</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00432"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#a35c0c0b78ca0ba3fa10e6a9c4eece492"> 432</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#a35c0c0b78ca0ba3fa10e6a9c4eece492">print_custom</a>(c_loop &vl,<span class="keyword">const</span> <span class="keywordtype">char</span> *format,FILE *fp) {</div>
|
|
<div class="line"><a name="l00433"></a><span class="lineno"> 433</span>  <span class="keywordtype">int</span> ijk,q;<span class="keywordtype">double</span> *pp;</div>
|
|
<div class="line"><a name="l00434"></a><span class="lineno"> 434</span>  <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1voro__base.html#a95d9ee6c1610afccf265198ae63b5e88">contains_neighbor</a>(format)) {</div>
|
|
<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  <a class="code" href="classvoro_1_1voronoicell__neighbor.html">voronoicell_neighbor</a> c;</div>
|
|
<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container.html#a9808b60d80f1d3ccc06ebd0a2495ac7a">compute_cell</a>(c,vl)) {</div>
|
|
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  ijk=vl.ijk;q=vl.q;pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[ijk]+<a class="code" href="classvoro_1_1container__base.html#a235781536a17eab85b547787ff3618ba">ps</a>*q;</div>
|
|
<div class="line"><a name="l00438"></a><span class="lineno"> 438</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a095c6bfc1b9b7a087d0b35b443e5c023">output_custom</a>(format,<span class="keywordtype">id</span>[ijk][q],*pp,pp[1],pp[2],default_radius,fp);</div>
|
|
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  } <span class="keywordflow">else</span> {</div>
|
|
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  <a class="code" href="classvoro_1_1voronoicell.html">voronoicell</a> c;</div>
|
|
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container.html#a9808b60d80f1d3ccc06ebd0a2495ac7a">compute_cell</a>(c,vl)) {</div>
|
|
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  ijk=vl.ijk;q=vl.q;pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[ijk]+<a class="code" href="classvoro_1_1container__base.html#a235781536a17eab85b547787ff3618ba">ps</a>*q;</div>
|
|
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a095c6bfc1b9b7a087d0b35b443e5c023">output_custom</a>(format,<span class="keywordtype">id</span>[ijk][q],*pp,pp[1],pp[2],default_radius,fp);</div>
|
|
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span>  }</div>
|
|
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  }</div>
|
|
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#a35c0c0b78ca0ba3fa10e6a9c4eece492">print_custom</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *format,FILE *fp=stdout);</div>
|
|
<div class="line"><a name="l00449"></a><span class="lineno"> 449</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container.html#a35c0c0b78ca0ba3fa10e6a9c4eece492">print_custom</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *format,<span class="keyword">const</span> <span class="keywordtype">char</span> *filename);</div>
|
|
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container.html#a5e73bd52fe92985962a248fed566737b">find_voronoi_cell</a>(<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">double</span> &rx,<span class="keywordtype">double</span> &ry,<span class="keywordtype">double</span> &rz,<span class="keywordtype">int</span> &pid);<span class="comment"></span></div>
|
|
<div class="line"><a name="l00451"></a><span class="lineno"> 451</span> <span class="comment"> /** Computes the Voronoi cell for a particle currently being</span></div>
|
|
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span> <span class="comment"> * referenced by a loop class.</span></div>
|
|
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span> <span class="comment"> * \param[out] c a Voronoi cell class in which to store the</span></div>
|
|
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span> <span class="comment"> * computed cell.</span></div>
|
|
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span> <span class="comment"> * \return True if the cell was computed. If the cell cannot be</span></div>
|
|
<div class="line"><a name="l00457"></a><span class="lineno"> 457</span> <span class="comment"> * computed, if it is removed entirely by a wall or boundary</span></div>
|
|
<div class="line"><a name="l00458"></a><span class="lineno"> 458</span> <span class="comment"> * condition, then the routine returns false. */</span></div>
|
|
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell,<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00460"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#a9808b60d80f1d3ccc06ebd0a2495ac7a"> 460</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container.html#a9808b60d80f1d3ccc06ebd0a2495ac7a">compute_cell</a>(v_cell &c,c_loop &vl) {</div>
|
|
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span>  <span class="keywordflow">return</span> vc.compute_cell(c,vl.ijk,vl.q,vl.i,vl.j,vl.k);</div>
|
|
<div class="line"><a name="l00462"></a><span class="lineno"> 462</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00463"></a><span class="lineno"> 463</span> <span class="comment"> /** Computes the Voronoi cell for given particle.</span></div>
|
|
<div class="line"><a name="l00464"></a><span class="lineno"> 464</span> <span class="comment"> * \param[out] c a Voronoi cell class in which to store the</span></div>
|
|
<div class="line"><a name="l00465"></a><span class="lineno"> 465</span> <span class="comment"> * computed cell.</span></div>
|
|
<div class="line"><a name="l00466"></a><span class="lineno"> 466</span> <span class="comment"> * \param[in] ijk the block that the particle is within.</span></div>
|
|
<div class="line"><a name="l00467"></a><span class="lineno"> 467</span> <span class="comment"> * \param[in] q the index of the particle within the block.</span></div>
|
|
<div class="line"><a name="l00468"></a><span class="lineno"> 468</span> <span class="comment"> * \return True if the cell was computed. If the cell cannot be</span></div>
|
|
<div class="line"><a name="l00469"></a><span class="lineno"> 469</span> <span class="comment"> * computed, if it is removed entirely by a wall or boundary</span></div>
|
|
<div class="line"><a name="l00470"></a><span class="lineno"> 470</span> <span class="comment"> * condition, then the routine returns false. */</span></div>
|
|
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell></div>
|
|
<div class="line"><a name="l00472"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#ad600a135ee01c2f1c08a5b9da58398ad"> 472</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container.html#ad600a135ee01c2f1c08a5b9da58398ad">compute_cell</a>(v_cell &c,<span class="keywordtype">int</span> ijk,<span class="keywordtype">int</span> q) {</div>
|
|
<div class="line"><a name="l00473"></a><span class="lineno"> 473</span>  <span class="keywordtype">int</span> k=ijk/<a class="code" href="classvoro_1_1voro__base.html#aad5f41101fce781214d2f0b69487a729">nxy</a>,ijkt=ijk-<a class="code" href="classvoro_1_1voro__base.html#aad5f41101fce781214d2f0b69487a729">nxy</a>*k,j=ijkt/<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>,i=ijkt-j*<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>;</div>
|
|
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span>  <span class="keywordflow">return</span> vc.compute_cell(c,ijk,q,i,j,k);</div>
|
|
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span> <span class="comment"> /** Computes the Voronoi cell for a ghost particle at a given</span></div>
|
|
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span> <span class="comment"> * location.</span></div>
|
|
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span> <span class="comment"> * \param[out] c a Voronoi cell class in which to store the</span></div>
|
|
<div class="line"><a name="l00479"></a><span class="lineno"> 479</span> <span class="comment"> * computed cell.</span></div>
|
|
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span> <span class="comment"> * \param[in] (x,y,z) the location of the ghost particle.</span></div>
|
|
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span> <span class="comment"> * \return True if the cell was computed. If the cell cannot be</span></div>
|
|
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span> <span class="comment"> * computed, if it is removed entirely by a wall or boundary</span></div>
|
|
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span> <span class="comment"> * condition, then the routine returns false. */</span></div>
|
|
<div class="line"><a name="l00484"></a><span class="lineno"> 484</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell></div>
|
|
<div class="line"><a name="l00485"></a><span class="lineno"><a class="line" href="classvoro_1_1container.html#a65d29c90b0f5a3c5d018d8eabdf19a5b"> 485</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container.html#a65d29c90b0f5a3c5d018d8eabdf19a5b">compute_ghost_cell</a>(v_cell &c,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z) {</div>
|
|
<div class="line"><a name="l00486"></a><span class="lineno"> 486</span>  <span class="keywordtype">int</span> ijk;</div>
|
|
<div class="line"><a name="l00487"></a><span class="lineno"> 487</span>  <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__base.html#a1ab1b31f6fcd3080cc9fd0948df61e1a">put_locate_block</a>(ijk,x,y,z)) {</div>
|
|
<div class="line"><a name="l00488"></a><span class="lineno"> 488</span>  <span class="keywordtype">double</span> *pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[ijk]+3*<a class="code" href="classvoro_1_1container__base.html#a987e612ffd2c459adf8c1784d308ef51">co</a>[ijk]++;</div>
|
|
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span>  *(pp++)=x;*(pp++)=y;*pp=z;</div>
|
|
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span>  <span class="keywordtype">bool</span> q=<a class="code" href="classvoro_1_1container.html#a9808b60d80f1d3ccc06ebd0a2495ac7a">compute_cell</a>(c,ijk,co[ijk]-1);</div>
|
|
<div class="line"><a name="l00491"></a><span class="lineno"> 491</span>  co[ijk]--;</div>
|
|
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span>  <span class="keywordflow">return</span> q;</div>
|
|
<div class="line"><a name="l00493"></a><span class="lineno"> 493</span>  }</div>
|
|
<div class="line"><a name="l00494"></a><span class="lineno"> 494</span>  <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
|
|
<div class="line"><a name="l00495"></a><span class="lineno"> 495</span>  }</div>
|
|
<div class="line"><a name="l00496"></a><span class="lineno"> 496</span>  <span class="keyword">private</span>:</div>
|
|
<div class="line"><a name="l00497"></a><span class="lineno"> 497</span>  <a class="code" href="classvoro_1_1voro__compute.html">voro_compute<container></a> vc;</div>
|
|
<div class="line"><a name="l00498"></a><span class="lineno"> 498</span>  <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="classvoro_1_1voro__compute.html">voro_compute</a><<a class="code" href="classvoro_1_1container.html">container</a>>;</div>
|
|
<div class="line"><a name="l00499"></a><span class="lineno"> 499</span> };</div>
|
|
<div class="line"><a name="l00500"></a><span class="lineno"> 500</span> <span class="comment"></span></div>
|
|
<div class="line"><a name="l00501"></a><span class="lineno"> 501</span> <span class="comment">/** \brief Extension of the container_base class for computing radical Voronoi</span></div>
|
|
<div class="line"><a name="l00502"></a><span class="lineno"> 502</span> <span class="comment"> * tessellations.</span></div>
|
|
<div class="line"><a name="l00503"></a><span class="lineno"> 503</span> <span class="comment"> *</span></div>
|
|
<div class="line"><a name="l00504"></a><span class="lineno"> 504</span> <span class="comment"> * This class is an extension of container_base class that has routines</span></div>
|
|
<div class="line"><a name="l00505"></a><span class="lineno"> 505</span> <span class="comment"> * specifically for computing the radical Voronoi tessellation that depends on</span></div>
|
|
<div class="line"><a name="l00506"></a><span class="lineno"> 506</span> <span class="comment"> * the particle radii. */</span></div>
|
|
<div class="line"><a name="l00507"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html"> 507</a></span> <span class="keyword">class </span><a class="code" href="classvoro_1_1container__poly.html">container_poly</a> : <span class="keyword">public</span> <a class="code" href="classvoro_1_1container__base.html">container_base</a>, <span class="keyword">public</span> <a class="code" href="classvoro_1_1radius__poly.html">radius_poly</a> {</div>
|
|
<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  <span class="keyword">public</span>:</div>
|
|
<div class="line"><a name="l00509"></a><span class="lineno"> 509</span>  <a class="code" href="classvoro_1_1container__poly.html#a1d782b31e7d6f5b2040ee2d25753cb53">container_poly</a>(<span class="keywordtype">double</span> ax_,<span class="keywordtype">double</span> bx_,<span class="keywordtype">double</span> ay_,<span class="keywordtype">double</span> by_,<span class="keywordtype">double</span> az_,<span class="keywordtype">double</span> bz_,</div>
|
|
<div class="line"><a name="l00510"></a><span class="lineno"> 510</span>  <span class="keywordtype">int</span> nx_,<span class="keywordtype">int</span> ny_,<span class="keywordtype">int</span> nz_,<span class="keywordtype">bool</span> xperiodic_,<span class="keywordtype">bool</span> yperiodic_,<span class="keywordtype">bool</span> zperiodic_,<span class="keywordtype">int</span> init_mem);</div>
|
|
<div class="line"><a name="l00511"></a><span class="lineno"> 511</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#a0012f95f5666a347e6585efc76b63b83">clear</a>();</div>
|
|
<div class="line"><a name="l00512"></a><span class="lineno"> 512</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#a61689312fb6f8ee36f1fbb0fe00e4fe3">put</a>(<span class="keywordtype">int</span> n,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">double</span> r);</div>
|
|
<div class="line"><a name="l00513"></a><span class="lineno"> 513</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#a61689312fb6f8ee36f1fbb0fe00e4fe3">put</a>(<a class="code" href="classvoro_1_1particle__order.html">particle_order</a> &vo,<span class="keywordtype">int</span> n,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">double</span> r);</div>
|
|
<div class="line"><a name="l00514"></a><span class="lineno"> 514</span>  <span class="keywordtype">void</span> <span class="keyword">import</span>(FILE *fp=stdin);</div>
|
|
<div class="line"><a name="l00515"></a><span class="lineno"> 515</span>  <span class="keywordtype">void</span> <span class="keyword">import</span>(<a class="code" href="classvoro_1_1particle__order.html">particle_order</a> &vo,FILE *fp=stdin);<span class="comment"></span></div>
|
|
<div class="line"><a name="l00516"></a><span class="lineno"> 516</span> <span class="comment"> /** Imports a list of particles from an open file stream into</span></div>
|
|
<div class="line"><a name="l00517"></a><span class="lineno"> 517</span> <span class="comment"> * the container_poly class. Entries of five numbers (Particle</span></div>
|
|
<div class="line"><a name="l00518"></a><span class="lineno"> 518</span> <span class="comment"> * ID, x position, y position, z position, radius) are searched</span></div>
|
|
<div class="line"><a name="l00519"></a><span class="lineno"> 519</span> <span class="comment"> * for. If the file cannot be successfully read, then the</span></div>
|
|
<div class="line"><a name="l00520"></a><span class="lineno"> 520</span> <span class="comment"> * routine causes a fatal error.</span></div>
|
|
<div class="line"><a name="l00521"></a><span class="lineno"> 521</span> <span class="comment"> * \param[in] filename the name of the file to open and read</span></div>
|
|
<div class="line"><a name="l00522"></a><span class="lineno"> 522</span> <span class="comment"> * from. */</span></div>
|
|
<div class="line"><a name="l00523"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#a0b8b64b39bab75e3cfc9282a23706bab"> 523</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <span class="keyword">import</span>(<span class="keyword">const</span> <span class="keywordtype">char</span>* filename) {</div>
|
|
<div class="line"><a name="l00524"></a><span class="lineno"> 524</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"r"</span>);</div>
|
|
<div class="line"><a name="l00525"></a><span class="lineno"> 525</span>  <span class="keyword">import</span>(fp);</div>
|
|
<div class="line"><a name="l00526"></a><span class="lineno"> 526</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00527"></a><span class="lineno"> 527</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00528"></a><span class="lineno"> 528</span> <span class="comment"> /** Imports a list of particles from an open file stream into</span></div>
|
|
<div class="line"><a name="l00529"></a><span class="lineno"> 529</span> <span class="comment"> * the container_poly class. Entries of five numbers (Particle</span></div>
|
|
<div class="line"><a name="l00530"></a><span class="lineno"> 530</span> <span class="comment"> * ID, x position, y position, z position, radius) are searched</span></div>
|
|
<div class="line"><a name="l00531"></a><span class="lineno"> 531</span> <span class="comment"> * for. In addition, the order in which particles are read is</span></div>
|
|
<div class="line"><a name="l00532"></a><span class="lineno"> 532</span> <span class="comment"> * saved into an ordering class. If the file cannot be</span></div>
|
|
<div class="line"><a name="l00533"></a><span class="lineno"> 533</span> <span class="comment"> * successfully read, then the routine causes a fatal error.</span></div>
|
|
<div class="line"><a name="l00534"></a><span class="lineno"> 534</span> <span class="comment"> * \param[in,out] vo the ordering class to use.</span></div>
|
|
<div class="line"><a name="l00535"></a><span class="lineno"> 535</span> <span class="comment"> * \param[in] filename the name of the file to open and read</span></div>
|
|
<div class="line"><a name="l00536"></a><span class="lineno"> 536</span> <span class="comment"> * from. */</span></div>
|
|
<div class="line"><a name="l00537"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#af897ea09b80064d4b492862884ba316c"> 537</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <span class="keyword">import</span>(<a class="code" href="classvoro_1_1particle__order.html">particle_order</a> &vo,<span class="keyword">const</span> <span class="keywordtype">char</span>* filename) {</div>
|
|
<div class="line"><a name="l00538"></a><span class="lineno"> 538</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"r"</span>);</div>
|
|
<div class="line"><a name="l00539"></a><span class="lineno"> 539</span>  <span class="keyword">import</span>(vo,fp);</div>
|
|
<div class="line"><a name="l00540"></a><span class="lineno"> 540</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00541"></a><span class="lineno"> 541</span>  }</div>
|
|
<div class="line"><a name="l00542"></a><span class="lineno"> 542</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#a40a4b63b1ac5980b92ca526ac2183489">compute_all_cells</a>();</div>
|
|
<div class="line"><a name="l00543"></a><span class="lineno"> 543</span>  <span class="keywordtype">double</span> <a class="code" href="classvoro_1_1container__poly.html#a081af78a1c9c863393fd07a548a84a2e">sum_cell_volumes</a>();<span class="comment"></span></div>
|
|
<div class="line"><a name="l00544"></a><span class="lineno"> 544</span> <span class="comment"> /** Dumps particle IDs, positions and radii to a file.</span></div>
|
|
<div class="line"><a name="l00545"></a><span class="lineno"> 545</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00546"></a><span class="lineno"> 546</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00547"></a><span class="lineno"> 547</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00548"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#af67af614b2b3ad084dfab83470fa8616"> 548</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#af67af614b2b3ad084dfab83470fa8616">draw_particles</a>(c_loop &vl,FILE *fp) {</div>
|
|
<div class="line"><a name="l00549"></a><span class="lineno"> 549</span>  <span class="keywordtype">double</span> *pp;</div>
|
|
<div class="line"><a name="l00550"></a><span class="lineno"> 550</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> {</div>
|
|
<div class="line"><a name="l00551"></a><span class="lineno"> 551</span>  pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[vl.ijk]+4*vl.q;</div>
|
|
<div class="line"><a name="l00552"></a><span class="lineno"> 552</span>  fprintf(fp,<span class="stringliteral">"%d %g %g %g %g\n"</span>,<span class="keywordtype">id</span>[vl.ijk][vl.q],*pp,pp[1],pp[2],pp[3]);</div>
|
|
<div class="line"><a name="l00553"></a><span class="lineno"> 553</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00554"></a><span class="lineno"> 554</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00555"></a><span class="lineno"> 555</span> <span class="comment"> /** Dumps all of the particle IDs, positions and radii to a</span></div>
|
|
<div class="line"><a name="l00556"></a><span class="lineno"> 556</span> <span class="comment"> * file.</span></div>
|
|
<div class="line"><a name="l00557"></a><span class="lineno"> 557</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00558"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#a25b1e68cf0ad4f60c7723afc9ad97bb2"> 558</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#a25b1e68cf0ad4f60c7723afc9ad97bb2">draw_particles</a>(FILE *fp=stdout) {</div>
|
|
<div class="line"><a name="l00559"></a><span class="lineno"> 559</span>  <a class="code" href="classvoro_1_1c__loop__all.html">c_loop_all</a> vl(*<span class="keyword">this</span>);</div>
|
|
<div class="line"><a name="l00560"></a><span class="lineno"> 560</span>  <a class="code" href="classvoro_1_1container__poly.html#af67af614b2b3ad084dfab83470fa8616">draw_particles</a>(vl,fp);</div>
|
|
<div class="line"><a name="l00561"></a><span class="lineno"> 561</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00562"></a><span class="lineno"> 562</span> <span class="comment"> /** Dumps all of the particle IDs, positions and radii to a</span></div>
|
|
<div class="line"><a name="l00563"></a><span class="lineno"> 563</span> <span class="comment"> * file.</span></div>
|
|
<div class="line"><a name="l00564"></a><span class="lineno"> 564</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
|
|
<div class="line"><a name="l00565"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#a8a20a1a70dd32c3323307be038bebb1d"> 565</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#a8a20a1a70dd32c3323307be038bebb1d">draw_particles</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
|
|
<div class="line"><a name="l00566"></a><span class="lineno"> 566</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
|
|
<div class="line"><a name="l00567"></a><span class="lineno"> 567</span>  <a class="code" href="classvoro_1_1container__poly.html#af67af614b2b3ad084dfab83470fa8616">draw_particles</a>(fp);</div>
|
|
<div class="line"><a name="l00568"></a><span class="lineno"> 568</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00569"></a><span class="lineno"> 569</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00570"></a><span class="lineno"> 570</span> <span class="comment"> /** Dumps particle positions in POV-Ray format.</span></div>
|
|
<div class="line"><a name="l00571"></a><span class="lineno"> 571</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00572"></a><span class="lineno"> 572</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00573"></a><span class="lineno"> 573</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00574"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#a56313161f9104ef0356238569317a34c"> 574</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#a56313161f9104ef0356238569317a34c">draw_particles_pov</a>(c_loop &vl,FILE *fp) {</div>
|
|
<div class="line"><a name="l00575"></a><span class="lineno"> 575</span>  <span class="keywordtype">double</span> *pp;</div>
|
|
<div class="line"><a name="l00576"></a><span class="lineno"> 576</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> {</div>
|
|
<div class="line"><a name="l00577"></a><span class="lineno"> 577</span>  pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[vl.ijk]+4*vl.q;</div>
|
|
<div class="line"><a name="l00578"></a><span class="lineno"> 578</span>  fprintf(fp,<span class="stringliteral">"// id %d\nsphere{<%g,%g,%g>,%g}\n"</span>,</div>
|
|
<div class="line"><a name="l00579"></a><span class="lineno"> 579</span>  <span class="keywordtype">id</span>[vl.ijk][vl.q],*pp,pp[1],pp[2],pp[3]);</div>
|
|
<div class="line"><a name="l00580"></a><span class="lineno"> 580</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00581"></a><span class="lineno"> 581</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00582"></a><span class="lineno"> 582</span> <span class="comment"> /** Dumps all the particle positions in POV-Ray format.</span></div>
|
|
<div class="line"><a name="l00583"></a><span class="lineno"> 583</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00584"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#a477ecfe9e0943e71a2e389d7cc85ab20"> 584</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#a477ecfe9e0943e71a2e389d7cc85ab20">draw_particles_pov</a>(FILE *fp=stdout) {</div>
|
|
<div class="line"><a name="l00585"></a><span class="lineno"> 585</span>  <a class="code" href="classvoro_1_1c__loop__all.html">c_loop_all</a> vl(*<span class="keyword">this</span>);</div>
|
|
<div class="line"><a name="l00586"></a><span class="lineno"> 586</span>  <a class="code" href="classvoro_1_1container__poly.html#a56313161f9104ef0356238569317a34c">draw_particles_pov</a>(vl,fp);</div>
|
|
<div class="line"><a name="l00587"></a><span class="lineno"> 587</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00588"></a><span class="lineno"> 588</span> <span class="comment"> /** Dumps all the particle positions in POV-Ray format.</span></div>
|
|
<div class="line"><a name="l00589"></a><span class="lineno"> 589</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
|
|
<div class="line"><a name="l00590"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#a866cce7547f14634e432d510050962ae"> 590</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#a866cce7547f14634e432d510050962ae">draw_particles_pov</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
|
|
<div class="line"><a name="l00591"></a><span class="lineno"> 591</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
|
|
<div class="line"><a name="l00592"></a><span class="lineno"> 592</span>  <a class="code" href="classvoro_1_1container__poly.html#a56313161f9104ef0356238569317a34c">draw_particles_pov</a>(fp);</div>
|
|
<div class="line"><a name="l00593"></a><span class="lineno"> 593</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00594"></a><span class="lineno"> 594</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00595"></a><span class="lineno"> 595</span> <span class="comment"> /** Computes Voronoi cells and saves the output in gnuplot</span></div>
|
|
<div class="line"><a name="l00596"></a><span class="lineno"> 596</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00597"></a><span class="lineno"> 597</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00598"></a><span class="lineno"> 598</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00599"></a><span class="lineno"> 599</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00600"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#ab1efabec22bdbff42302d94620a71937"> 600</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#ab1efabec22bdbff42302d94620a71937">draw_cells_gnuplot</a>(c_loop &vl,FILE *fp) {</div>
|
|
<div class="line"><a name="l00601"></a><span class="lineno"> 601</span>  <a class="code" href="classvoro_1_1voronoicell.html">voronoicell</a> c;<span class="keywordtype">double</span> *pp;</div>
|
|
<div class="line"><a name="l00602"></a><span class="lineno"> 602</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__poly.html#ae01c610b46aad0aae4998697b69a4b1c">compute_cell</a>(c,vl)) {</div>
|
|
<div class="line"><a name="l00603"></a><span class="lineno"> 603</span>  pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[vl.ijk]+<a class="code" href="classvoro_1_1container__base.html#a235781536a17eab85b547787ff3618ba">ps</a>*vl.q;</div>
|
|
<div class="line"><a name="l00604"></a><span class="lineno"> 604</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a1c0657c1d89313089bbd437170c97d46">draw_gnuplot</a>(*pp,pp[1],pp[2],fp);</div>
|
|
<div class="line"><a name="l00605"></a><span class="lineno"> 605</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00606"></a><span class="lineno"> 606</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00607"></a><span class="lineno"> 607</span> <span class="comment"> /** Compute all Voronoi cells and saves the output in gnuplot</span></div>
|
|
<div class="line"><a name="l00608"></a><span class="lineno"> 608</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00609"></a><span class="lineno"> 609</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00610"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#ac0700e38ce6ed742dcb52ab6523b1956"> 610</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#ac0700e38ce6ed742dcb52ab6523b1956">draw_cells_gnuplot</a>(FILE *fp=stdout) {</div>
|
|
<div class="line"><a name="l00611"></a><span class="lineno"> 611</span>  <a class="code" href="classvoro_1_1c__loop__all.html">c_loop_all</a> vl(*<span class="keyword">this</span>);</div>
|
|
<div class="line"><a name="l00612"></a><span class="lineno"> 612</span>  <a class="code" href="classvoro_1_1container__poly.html#ab1efabec22bdbff42302d94620a71937">draw_cells_gnuplot</a>(vl,fp);</div>
|
|
<div class="line"><a name="l00613"></a><span class="lineno"> 613</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00614"></a><span class="lineno"> 614</span> <span class="comment"> /** Compute all Voronoi cells and saves the output in gnuplot</span></div>
|
|
<div class="line"><a name="l00615"></a><span class="lineno"> 615</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00616"></a><span class="lineno"> 616</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
|
|
<div class="line"><a name="l00617"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#ad360a8ec2c8d59b69b65f34fdba92887"> 617</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#ad360a8ec2c8d59b69b65f34fdba92887">draw_cells_gnuplot</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
|
|
<div class="line"><a name="l00618"></a><span class="lineno"> 618</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
|
|
<div class="line"><a name="l00619"></a><span class="lineno"> 619</span>  <a class="code" href="classvoro_1_1container__poly.html#ab1efabec22bdbff42302d94620a71937">draw_cells_gnuplot</a>(fp);</div>
|
|
<div class="line"><a name="l00620"></a><span class="lineno"> 620</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00621"></a><span class="lineno"> 621</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00622"></a><span class="lineno"> 622</span> <span class="comment"> /** Computes Voronoi cells and saves the output in POV-Ray</span></div>
|
|
<div class="line"><a name="l00623"></a><span class="lineno"> 623</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00624"></a><span class="lineno"> 624</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00625"></a><span class="lineno"> 625</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00626"></a><span class="lineno"> 626</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00627"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#aaaddce8c16e4df211db3cbe9f9ca83de"> 627</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#aaaddce8c16e4df211db3cbe9f9ca83de">draw_cells_pov</a>(c_loop &vl,FILE *fp) {</div>
|
|
<div class="line"><a name="l00628"></a><span class="lineno"> 628</span>  <a class="code" href="classvoro_1_1voronoicell.html">voronoicell</a> c;<span class="keywordtype">double</span> *pp;</div>
|
|
<div class="line"><a name="l00629"></a><span class="lineno"> 629</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__poly.html#ae01c610b46aad0aae4998697b69a4b1c">compute_cell</a>(c,vl)) {</div>
|
|
<div class="line"><a name="l00630"></a><span class="lineno"> 630</span>  fprintf(fp,<span class="stringliteral">"// cell %d\n"</span>,<span class="keywordtype">id</span>[vl.ijk][vl.q]);</div>
|
|
<div class="line"><a name="l00631"></a><span class="lineno"> 631</span>  pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[vl.ijk]+<a class="code" href="classvoro_1_1container__base.html#a235781536a17eab85b547787ff3618ba">ps</a>*vl.q;</div>
|
|
<div class="line"><a name="l00632"></a><span class="lineno"> 632</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a923ffa62bd5d62070cd29e01f3a1327a">draw_pov</a>(*pp,pp[1],pp[2],fp);</div>
|
|
<div class="line"><a name="l00633"></a><span class="lineno"> 633</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00634"></a><span class="lineno"> 634</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00635"></a><span class="lineno"> 635</span> <span class="comment"> /** Computes all Voronoi cells and saves the output in POV-Ray</span></div>
|
|
<div class="line"><a name="l00636"></a><span class="lineno"> 636</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00637"></a><span class="lineno"> 637</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00638"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#a8d56858927fc6686696e4338f9ac784d"> 638</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#a8d56858927fc6686696e4338f9ac784d">draw_cells_pov</a>(FILE *fp=stdout) {</div>
|
|
<div class="line"><a name="l00639"></a><span class="lineno"> 639</span>  <a class="code" href="classvoro_1_1c__loop__all.html">c_loop_all</a> vl(*<span class="keyword">this</span>);</div>
|
|
<div class="line"><a name="l00640"></a><span class="lineno"> 640</span>  <a class="code" href="classvoro_1_1container__poly.html#aaaddce8c16e4df211db3cbe9f9ca83de">draw_cells_pov</a>(vl,fp);</div>
|
|
<div class="line"><a name="l00641"></a><span class="lineno"> 641</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00642"></a><span class="lineno"> 642</span> <span class="comment"> /** Computes all Voronoi cells and saves the output in POV-Ray</span></div>
|
|
<div class="line"><a name="l00643"></a><span class="lineno"> 643</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00644"></a><span class="lineno"> 644</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
|
|
<div class="line"><a name="l00645"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#ae949e1e7d3207212db3c99677e4906cd"> 645</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#ae949e1e7d3207212db3c99677e4906cd">draw_cells_pov</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
|
|
<div class="line"><a name="l00646"></a><span class="lineno"> 646</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
|
|
<div class="line"><a name="l00647"></a><span class="lineno"> 647</span>  <a class="code" href="classvoro_1_1container__poly.html#aaaddce8c16e4df211db3cbe9f9ca83de">draw_cells_pov</a>(fp);</div>
|
|
<div class="line"><a name="l00648"></a><span class="lineno"> 648</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00649"></a><span class="lineno"> 649</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00650"></a><span class="lineno"> 650</span> <span class="comment"> /** Computes the Voronoi cells and saves customized information</span></div>
|
|
<div class="line"><a name="l00651"></a><span class="lineno"> 651</span> <span class="comment"> * about them.</span></div>
|
|
<div class="line"><a name="l00652"></a><span class="lineno"> 652</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00653"></a><span class="lineno"> 653</span> <span class="comment"> * \param[in] format the custom output string to use.</span></div>
|
|
<div class="line"><a name="l00654"></a><span class="lineno"> 654</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00655"></a><span class="lineno"> 655</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00656"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#a60907bce91cfacfa054a69872fb10ee3"> 656</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#a60907bce91cfacfa054a69872fb10ee3">print_custom</a>(c_loop &vl,<span class="keyword">const</span> <span class="keywordtype">char</span> *format,FILE *fp) {</div>
|
|
<div class="line"><a name="l00657"></a><span class="lineno"> 657</span>  <span class="keywordtype">int</span> ijk,q;<span class="keywordtype">double</span> *pp;</div>
|
|
<div class="line"><a name="l00658"></a><span class="lineno"> 658</span>  <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1voro__base.html#a95d9ee6c1610afccf265198ae63b5e88">contains_neighbor</a>(format)) {</div>
|
|
<div class="line"><a name="l00659"></a><span class="lineno"> 659</span>  <a class="code" href="classvoro_1_1voronoicell__neighbor.html">voronoicell_neighbor</a> c;</div>
|
|
<div class="line"><a name="l00660"></a><span class="lineno"> 660</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__poly.html#ae01c610b46aad0aae4998697b69a4b1c">compute_cell</a>(c,vl)) {</div>
|
|
<div class="line"><a name="l00661"></a><span class="lineno"> 661</span>  ijk=vl.ijk;q=vl.q;pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[ijk]+<a class="code" href="classvoro_1_1container__base.html#a235781536a17eab85b547787ff3618ba">ps</a>*q;</div>
|
|
<div class="line"><a name="l00662"></a><span class="lineno"> 662</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a095c6bfc1b9b7a087d0b35b443e5c023">output_custom</a>(format,<span class="keywordtype">id</span>[ijk][q],*pp,pp[1],pp[2],pp[3],fp);</div>
|
|
<div class="line"><a name="l00663"></a><span class="lineno"> 663</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00664"></a><span class="lineno"> 664</span>  } <span class="keywordflow">else</span> {</div>
|
|
<div class="line"><a name="l00665"></a><span class="lineno"> 665</span>  <a class="code" href="classvoro_1_1voronoicell.html">voronoicell</a> c;</div>
|
|
<div class="line"><a name="l00666"></a><span class="lineno"> 666</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__poly.html#ae01c610b46aad0aae4998697b69a4b1c">compute_cell</a>(c,vl)) {</div>
|
|
<div class="line"><a name="l00667"></a><span class="lineno"> 667</span>  ijk=vl.ijk;q=vl.q;pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[ijk]+<a class="code" href="classvoro_1_1container__base.html#a235781536a17eab85b547787ff3618ba">ps</a>*q;</div>
|
|
<div class="line"><a name="l00668"></a><span class="lineno"> 668</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a095c6bfc1b9b7a087d0b35b443e5c023">output_custom</a>(format,<span class="keywordtype">id</span>[ijk][q],*pp,pp[1],pp[2],pp[3],fp);</div>
|
|
<div class="line"><a name="l00669"></a><span class="lineno"> 669</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00670"></a><span class="lineno"> 670</span>  }</div>
|
|
<div class="line"><a name="l00671"></a><span class="lineno"> 671</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00672"></a><span class="lineno"> 672</span> <span class="comment"> /** Computes the Voronoi cell for a particle currently being</span></div>
|
|
<div class="line"><a name="l00673"></a><span class="lineno"> 673</span> <span class="comment"> * referenced by a loop class.</span></div>
|
|
<div class="line"><a name="l00674"></a><span class="lineno"> 674</span> <span class="comment"> * \param[out] c a Voronoi cell class in which to store the</span></div>
|
|
<div class="line"><a name="l00675"></a><span class="lineno"> 675</span> <span class="comment"> * computed cell.</span></div>
|
|
<div class="line"><a name="l00676"></a><span class="lineno"> 676</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00677"></a><span class="lineno"> 677</span> <span class="comment"> * \return True if the cell was computed. If the cell cannot be</span></div>
|
|
<div class="line"><a name="l00678"></a><span class="lineno"> 678</span> <span class="comment"> * computed, if it is removed entirely by a wall or boundary</span></div>
|
|
<div class="line"><a name="l00679"></a><span class="lineno"> 679</span> <span class="comment"> * condition, then the routine returns false. */</span></div>
|
|
<div class="line"><a name="l00680"></a><span class="lineno"> 680</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell,<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00681"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#ae01c610b46aad0aae4998697b69a4b1c"> 681</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__poly.html#ae01c610b46aad0aae4998697b69a4b1c">compute_cell</a>(v_cell &c,c_loop &vl) {</div>
|
|
<div class="line"><a name="l00682"></a><span class="lineno"> 682</span>  <span class="keywordflow">return</span> vc.compute_cell(c,vl.ijk,vl.q,vl.i,vl.j,vl.k);</div>
|
|
<div class="line"><a name="l00683"></a><span class="lineno"> 683</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00684"></a><span class="lineno"> 684</span> <span class="comment"> /** Computes the Voronoi cell for given particle.</span></div>
|
|
<div class="line"><a name="l00685"></a><span class="lineno"> 685</span> <span class="comment"> * \param[out] c a Voronoi cell class in which to store the</span></div>
|
|
<div class="line"><a name="l00686"></a><span class="lineno"> 686</span> <span class="comment"> * computed cell.</span></div>
|
|
<div class="line"><a name="l00687"></a><span class="lineno"> 687</span> <span class="comment"> * \param[in] ijk the block that the particle is within.</span></div>
|
|
<div class="line"><a name="l00688"></a><span class="lineno"> 688</span> <span class="comment"> * \param[in] q the index of the particle within the block.</span></div>
|
|
<div class="line"><a name="l00689"></a><span class="lineno"> 689</span> <span class="comment"> * \return True if the cell was computed. If the cell cannot be</span></div>
|
|
<div class="line"><a name="l00690"></a><span class="lineno"> 690</span> <span class="comment"> * computed, if it is removed entirely by a wall or boundary</span></div>
|
|
<div class="line"><a name="l00691"></a><span class="lineno"> 691</span> <span class="comment"> * condition, then the routine returns false. */</span></div>
|
|
<div class="line"><a name="l00692"></a><span class="lineno"> 692</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell></div>
|
|
<div class="line"><a name="l00693"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#a12b9eeac5c7f409e1d75f77876c7bd3d"> 693</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__poly.html#a12b9eeac5c7f409e1d75f77876c7bd3d">compute_cell</a>(v_cell &c,<span class="keywordtype">int</span> ijk,<span class="keywordtype">int</span> q) {</div>
|
|
<div class="line"><a name="l00694"></a><span class="lineno"> 694</span>  <span class="keywordtype">int</span> k=ijk/<a class="code" href="classvoro_1_1voro__base.html#aad5f41101fce781214d2f0b69487a729">nxy</a>,ijkt=ijk-<a class="code" href="classvoro_1_1voro__base.html#aad5f41101fce781214d2f0b69487a729">nxy</a>*k,j=ijkt/<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>,i=ijkt-j*<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>;</div>
|
|
<div class="line"><a name="l00695"></a><span class="lineno"> 695</span>  <span class="keywordflow">return</span> vc.compute_cell(c,ijk,q,i,j,k);</div>
|
|
<div class="line"><a name="l00696"></a><span class="lineno"> 696</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00697"></a><span class="lineno"> 697</span> <span class="comment"> /** Computes the Voronoi cell for a ghost particle at a given</span></div>
|
|
<div class="line"><a name="l00698"></a><span class="lineno"> 698</span> <span class="comment"> * location.</span></div>
|
|
<div class="line"><a name="l00699"></a><span class="lineno"> 699</span> <span class="comment"> * \param[out] c a Voronoi cell class in which to store the</span></div>
|
|
<div class="line"><a name="l00700"></a><span class="lineno"> 700</span> <span class="comment"> * computed cell.</span></div>
|
|
<div class="line"><a name="l00701"></a><span class="lineno"> 701</span> <span class="comment"> * \param[in] (x,y,z) the location of the ghost particle.</span></div>
|
|
<div class="line"><a name="l00702"></a><span class="lineno"> 702</span> <span class="comment"> * \param[in] r the radius of the ghost particle.</span></div>
|
|
<div class="line"><a name="l00703"></a><span class="lineno"> 703</span> <span class="comment"> * \return True if the cell was computed. If the cell cannot be</span></div>
|
|
<div class="line"><a name="l00704"></a><span class="lineno"> 704</span> <span class="comment"> * computed, if it is removed entirely by a wall or boundary</span></div>
|
|
<div class="line"><a name="l00705"></a><span class="lineno"> 705</span> <span class="comment"> * condition, then the routine returns false. */</span></div>
|
|
<div class="line"><a name="l00706"></a><span class="lineno"> 706</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell></div>
|
|
<div class="line"><a name="l00707"></a><span class="lineno"><a class="line" href="classvoro_1_1container__poly.html#a09c379ffe31e8679a29a727f23af4564"> 707</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__poly.html#a09c379ffe31e8679a29a727f23af4564">compute_ghost_cell</a>(v_cell &c,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">double</span> r) {</div>
|
|
<div class="line"><a name="l00708"></a><span class="lineno"> 708</span>  <span class="keywordtype">int</span> ijk;</div>
|
|
<div class="line"><a name="l00709"></a><span class="lineno"> 709</span>  <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__base.html#a1ab1b31f6fcd3080cc9fd0948df61e1a">put_locate_block</a>(ijk,x,y,z)) {</div>
|
|
<div class="line"><a name="l00710"></a><span class="lineno"> 710</span>  <span class="keywordtype">double</span> *pp=<a class="code" href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">p</a>[ijk]+4*<a class="code" href="classvoro_1_1container__base.html#a987e612ffd2c459adf8c1784d308ef51">co</a>[ijk]++,tm=<a class="code" href="classvoro_1_1radius__poly.html#a9faed3ac8ef95c646e376a7fe915fb0b">max_radius</a>;</div>
|
|
<div class="line"><a name="l00711"></a><span class="lineno"> 711</span>  *(pp++)=x;*(pp++)=y;*(pp++)=z;*pp=r;</div>
|
|
<div class="line"><a name="l00712"></a><span class="lineno"> 712</span>  <span class="keywordflow">if</span>(r><a class="code" href="classvoro_1_1radius__poly.html#a9faed3ac8ef95c646e376a7fe915fb0b">max_radius</a>) <a class="code" href="classvoro_1_1radius__poly.html#a9faed3ac8ef95c646e376a7fe915fb0b">max_radius</a>=r;</div>
|
|
<div class="line"><a name="l00713"></a><span class="lineno"> 713</span>  <span class="keywordtype">bool</span> q=<a class="code" href="classvoro_1_1container__poly.html#ae01c610b46aad0aae4998697b69a4b1c">compute_cell</a>(c,ijk,co[ijk]-1);</div>
|
|
<div class="line"><a name="l00714"></a><span class="lineno"> 714</span>  co[ijk]--;<a class="code" href="classvoro_1_1radius__poly.html#a9faed3ac8ef95c646e376a7fe915fb0b">max_radius</a>=tm;</div>
|
|
<div class="line"><a name="l00715"></a><span class="lineno"> 715</span>  <span class="keywordflow">return</span> q;</div>
|
|
<div class="line"><a name="l00716"></a><span class="lineno"> 716</span>  }</div>
|
|
<div class="line"><a name="l00717"></a><span class="lineno"> 717</span>  <span class="keywordflow">return</span> <span class="keyword">false</span>;</div>
|
|
<div class="line"><a name="l00718"></a><span class="lineno"> 718</span>  }</div>
|
|
<div class="line"><a name="l00719"></a><span class="lineno"> 719</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#a60907bce91cfacfa054a69872fb10ee3">print_custom</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *format,FILE *fp=stdout);</div>
|
|
<div class="line"><a name="l00720"></a><span class="lineno"> 720</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__poly.html#a60907bce91cfacfa054a69872fb10ee3">print_custom</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *format,<span class="keyword">const</span> <span class="keywordtype">char</span> *filename);</div>
|
|
<div class="line"><a name="l00721"></a><span class="lineno"> 721</span>  <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__poly.html#aa02b6b6e5605b28fc8ecf0cd0a757903">find_voronoi_cell</a>(<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">double</span> &rx,<span class="keywordtype">double</span> &ry,<span class="keywordtype">double</span> &rz,<span class="keywordtype">int</span> &pid);</div>
|
|
<div class="line"><a name="l00722"></a><span class="lineno"> 722</span>  <span class="keyword">private</span>:</div>
|
|
<div class="line"><a name="l00723"></a><span class="lineno"> 723</span>  <a class="code" href="classvoro_1_1voro__compute.html">voro_compute<container_poly></a> vc;</div>
|
|
<div class="line"><a name="l00724"></a><span class="lineno"> 724</span>  <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="classvoro_1_1voro__compute.html">voro_compute</a><<a class="code" href="classvoro_1_1container__poly.html">container_poly</a>>;</div>
|
|
<div class="line"><a name="l00725"></a><span class="lineno"> 725</span> };</div>
|
|
<div class="line"><a name="l00726"></a><span class="lineno"> 726</span> </div>
|
|
<div class="line"><a name="l00727"></a><span class="lineno"> 727</span> }</div>
|
|
<div class="line"><a name="l00728"></a><span class="lineno"> 728</span> </div>
|
|
<div class="line"><a name="l00729"></a><span class="lineno"> 729</span> <span class="preprocessor">#endif</span></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a40a4b63b1ac5980b92ca526ac2183489"><div class="ttname"><a href="classvoro_1_1container__poly.html#a40a4b63b1ac5980b92ca526ac2183489">voro::container_poly::compute_all_cells</a></div><div class="ttdeci">void compute_all_cells()</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00446">container.cc:446</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_af6d18399db1c92816296bc70af8440b5"><div class="ttname"><a href="classvoro_1_1container__base.html#af6d18399db1c92816296bc70af8440b5">voro::container_base::initialize_voronoicell</a></div><div class="ttdeci">bool initialize_voronoicell(v_cell &c, int ijk, int q, int ci, int cj, int ck, int &i, int &j, int &k, double &x, double &y, double &z, int &disp)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00189">container.hh:189</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voronoicell__neighbor_html"><div class="ttname"><a href="classvoro_1_1voronoicell__neighbor.html">voro::voronoicell_neighbor</a></div><div class="ttdoc">Extension of the voronoicell_base class to represent a Voronoi cell with neighbor information...</div><div class="ttdef"><b>Definition:</b> <a href="cell_8hh_source.html#l00403">cell.hh:403</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a0798a7623a37b1a9da86f225119606e5"><div class="ttname"><a href="classvoro_1_1container__base.html#a0798a7623a37b1a9da86f225119606e5">voro::container_base::p</a></div><div class="ttdeci">double ** p</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00144">container.hh:144</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_abe09747feba40102470c91f93d25fbfc"><div class="ttname"><a href="classvoro_1_1container__base.html#abe09747feba40102470c91f93d25fbfc">voro::container_base::remap</a></div><div class="ttdeci">bool remap(int &ai, int &aj, int &ak, int &ci, int &cj, int &ck, double &x, double &y, double &z, int &ijk)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00200">container.cc:200</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall__list_html_abb48a3e29042c51cf48fa6a6b6c2dc1d"><div class="ttname"><a href="classvoro_1_1wall__list.html#abb48a3e29042c51cf48fa6a6b6c2dc1d">voro::wall_list::wep</a></div><div class="ttdeci">wall ** wep</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00058">container.hh:58</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1c__loop__all_html"><div class="ttname"><a href="classvoro_1_1c__loop__all.html">voro::c_loop_all</a></div><div class="ttdoc">Class for looping over all of the particles in a container. </div><div class="ttdef"><b>Definition:</b> <a href="c__loops_8hh_source.html#l00165">c_loops.hh:165</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a6734b7147a71bb7e2a4a313d4153bebf"><div class="ttname"><a href="classvoro_1_1container__base.html#a6734b7147a71bb7e2a4a313d4153bebf">voro::container_base::xperiodic</a></div><div class="ttdeci">const bool xperiodic</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00131">container.hh:131</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voronoicell__base_html_a1c0657c1d89313089bbd437170c97d46"><div class="ttname"><a href="classvoro_1_1voronoicell__base.html#a1c0657c1d89313089bbd437170c97d46">voro::voronoicell_base::draw_gnuplot</a></div><div class="ttdeci">void draw_gnuplot(double x, double y, double z, FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="cell_8cc_source.html#l01507">cell.cc:1507</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a081af78a1c9c863393fd07a548a84a2e"><div class="ttname"><a href="classvoro_1_1container__poly.html#a081af78a1c9c863393fd07a548a84a2e">voro::container_poly::sum_cell_volumes</a></div><div class="ttdeci">double sum_cell_volumes()</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00468">container.cc:468</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a5812915614c26d5e52697902556ed996"><div class="ttname"><a href="classvoro_1_1container.html#a5812915614c26d5e52697902556ed996">voro::container::draw_cells_gnuplot</a></div><div class="ttdeci">void draw_cells_gnuplot(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00386">container.hh:386</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a235781536a17eab85b547787ff3618ba"><div class="ttname"><a href="classvoro_1_1container__base.html#a235781536a17eab85b547787ff3618ba">voro::container_base::ps</a></div><div class="ttdeci">const int ps</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00160">container.hh:160</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_af070c53156c75171a13dacb2ef2148aa"><div class="ttname"><a href="classvoro_1_1container__base.html#af070c53156c75171a13dacb2ef2148aa">voro::container_base::put_remap</a></div><div class="ttdeci">bool put_remap(int &ijk, double &x, double &y, double &z)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00171">container.cc:171</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1radius__poly_html"><div class="ttname"><a href="classvoro_1_1radius__poly.html">voro::radius_poly</a></div><div class="ttdoc">Class containing all of the routines that are specific to computing the radical Voronoi tessellation...</div><div class="ttdef"><b>Definition:</b> <a href="rad__option_8hh_source.html#l00082">rad_option.hh:82</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a50de485630d0b693fb418be1726826a7"><div class="ttname"><a href="classvoro_1_1container__base.html#a50de485630d0b693fb418be1726826a7">voro::container_base::id</a></div><div class="ttdeci">int ** id</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00140">container.hh:140</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall__list_html_a49c42b672f2eb7535c3b3564bb6cf51f"><div class="ttname"><a href="classvoro_1_1wall__list.html#a49c42b672f2eb7535c3b3564bb6cf51f">voro::wall_list::deallocate</a></div><div class="ttdeci">void deallocate()</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00534">container.cc:534</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_aa387c1b649fe6eabafe4546ae7410c6b"><div class="ttname"><a href="classvoro_1_1container.html#aa387c1b649fe6eabafe4546ae7410c6b">voro::container::draw_cells_gnuplot</a></div><div class="ttdeci">void draw_cells_gnuplot(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00393">container.hh:393</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_afd9b8e6b3c6bb4376d1f755ef7ac789d"><div class="ttname"><a href="classvoro_1_1container__base.html#afd9b8e6b3c6bb4376d1f755ef7ac789d">voro::container_base::bx</a></div><div class="ttdeci">const double bx</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00120">container.hh:120</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a8d56858927fc6686696e4338f9ac784d"><div class="ttname"><a href="classvoro_1_1container__poly.html#a8d56858927fc6686696e4338f9ac784d">voro::container_poly::draw_cells_pov</a></div><div class="ttdeci">void draw_cells_pov(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00638">container.hh:638</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall__list_html_afb2cd60a3624dd4033ccddd690321489"><div class="ttname"><a href="classvoro_1_1wall__list.html#afb2cd60a3624dd4033ccddd690321489">voro::wall_list::increase_wall_memory</a></div><div class="ttdeci">void increase_wall_memory()</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00539">container.cc:539</a></div></div>
|
|
<div class="ttc" id="rad__option_8hh_html"><div class="ttname"><a href="rad__option_8hh.html">rad_option.hh</a></div><div class="ttdoc">Header file for the classes encapsulating functionality for the regular and radical Voronoi tessellat...</div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_ab64ef06e1e257e83a33422a044ef9858"><div class="ttname"><a href="classvoro_1_1container__base.html#ab64ef06e1e257e83a33422a044ef9858">voro::container_base::ay</a></div><div class="ttdeci">const double ay</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00122">container.hh:122</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall__list_html_a8e3a5253fa0392bf0f8b7a84eb1b61d4"><div class="ttname"><a href="classvoro_1_1wall__list.html#a8e3a5253fa0392bf0f8b7a84eb1b61d4">voro::wall_list::add_wall</a></div><div class="ttdeci">void add_wall(wall &w)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00069">container.hh:69</a></div></div>
|
|
<div class="ttc" id="c__loops_8hh_html"><div class="ttname"><a href="c__loops_8hh.html">c_loops.hh</a></div><div class="ttdoc">Header file for the loop classes. </div></div>
|
|
<div class="ttc" id="classvoro_1_1voro__base_html"><div class="ttname"><a href="classvoro_1_1voro__base.html">voro::voro_base</a></div><div class="ttdoc">Class containing data structures common across all particle container classes. </div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00025">v_base.hh:25</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a25b1e68cf0ad4f60c7723afc9ad97bb2"><div class="ttname"><a href="classvoro_1_1container__poly.html#a25b1e68cf0ad4f60c7723afc9ad97bb2">voro::container_poly::draw_particles</a></div><div class="ttdeci">void draw_particles(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00558">container.hh:558</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voro__base_html_a3ad6b0eefbdff03e92d30f5035defdd1"><div class="ttname"><a href="classvoro_1_1voro__base.html#a3ad6b0eefbdff03e92d30f5035defdd1">voro::voro_base::boxy</a></div><div class="ttdeci">const double boxy</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00043">v_base.hh:43</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a56313161f9104ef0356238569317a34c"><div class="ttname"><a href="classvoro_1_1container__poly.html#a56313161f9104ef0356238569317a34c">voro::container_poly::draw_particles_pov</a></div><div class="ttdeci">void draw_particles_pov(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00574">container.hh:574</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a019db0a854b71ac57886155422bb53d6"><div class="ttname"><a href="classvoro_1_1container__base.html#a019db0a854b71ac57886155422bb53d6">voro::container_base::draw_domain_gnuplot</a></div><div class="ttdeci">void draw_domain_gnuplot(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00252">container.hh:252</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a4bfde4e186de8a12fbb5b5d7f16f9387"><div class="ttname"><a href="classvoro_1_1container.html#a4bfde4e186de8a12fbb5b5d7f16f9387">voro::container::draw_particles_pov</a></div><div class="ttdeci">void draw_particles_pov(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00350">container.hh:350</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall__list_html"><div class="ttname"><a href="classvoro_1_1wall__list.html">voro::wall_list</a></div><div class="ttdoc">A class for storing a list of pointers to walls. </div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00052">container.hh:52</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall__list_html_a8a06b6562bbf488ff30852cd1a548506"><div class="ttname"><a href="classvoro_1_1wall__list.html#a8a06b6562bbf488ff30852cd1a548506">voro::wall_list::current_wall_size</a></div><div class="ttdeci">int current_wall_size</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00097">container.hh:97</a></div></div>
|
|
<div class="ttc" id="cell_8hh_html"><div class="ttname"><a href="cell_8hh.html">cell.hh</a></div><div class="ttdoc">Header file for the voronoicell and related classes. </div></div>
|
|
<div class="ttc" id="config_8hh_html"><div class="ttname"><a href="config_8hh.html">config.hh</a></div><div class="ttdoc">Master configuration file for setting various compile-time options. </div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a67dbf4a79fac8527ccee72d881c6654d"><div class="ttname"><a href="classvoro_1_1container__base.html#a67dbf4a79fac8527ccee72d881c6654d">voro::container_base::draw_domain_gnuplot</a></div><div class="ttdeci">void draw_domain_gnuplot(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00488">container.cc:488</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a76b645960fba43620e096b7bdf178603"><div class="ttname"><a href="classvoro_1_1container__base.html#a76b645960fba43620e096b7bdf178603">voro::container_base::region_index</a></div><div class="ttdeci">int region_index(int ci, int cj, int ck, int ei, int ej, int ek, double &qx, double &qy, double &qz, int &disp)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00243">container.hh:243</a></div></div>
|
|
<div class="ttc" id="v__compute_8hh_html"><div class="ttname"><a href="v__compute_8hh.html">v_compute.hh</a></div><div class="ttdoc">Header file for the voro_compute template and related classes. </div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html"><div class="ttname"><a href="classvoro_1_1container.html">voro::container</a></div><div class="ttdoc">Extension of the container_base class for computing regular Voronoi tessellations. </div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00285">container.hh:285</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a633edc1737859a7dde8ca2e466e12cfe"><div class="ttname"><a href="classvoro_1_1container__base.html#a633edc1737859a7dde8ca2e466e12cfe">voro::container_base::mem</a></div><div class="ttdeci">int * mem</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00153">container.hh:153</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_aa02b6b6e5605b28fc8ecf0cd0a757903"><div class="ttname"><a href="classvoro_1_1container__poly.html#aa02b6b6e5605b28fc8ecf0cd0a757903">voro::container_poly::find_voronoi_cell</a></div><div class="ttdeci">bool find_voronoi_cell(double x, double y, double z, double &rx, double &ry, double &rz, int &pid)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00272">container.cc:272</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a0890eac6d9f02b8d7b8e41a8a98ff2ee"><div class="ttname"><a href="classvoro_1_1container.html#a0890eac6d9f02b8d7b8e41a8a98ff2ee">voro::container::clear</a></div><div class="ttdeci">void clear()</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00384">container.cc:384</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a987e612ffd2c459adf8c1784d308ef51"><div class="ttname"><a href="classvoro_1_1container__base.html#a987e612ffd2c459adf8c1784d308ef51">voro::container_base::co</a></div><div class="ttdeci">int * co</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00147">container.hh:147</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a27de2088113bb64a4b045bea7c590be3"><div class="ttname"><a href="classvoro_1_1container__base.html#a27de2088113bb64a4b045bea7c590be3">voro::container_base::bz</a></div><div class="ttdeci">const double bz</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00128">container.hh:128</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a13bc3a19033255fb04049288c7cd5818"><div class="ttname"><a href="classvoro_1_1container.html#a13bc3a19033255fb04049288c7cd5818">voro::container::draw_cells_gnuplot</a></div><div class="ttdeci">void draw_cells_gnuplot(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00376">container.hh:376</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_aaaddce8c16e4df211db3cbe9f9ca83de"><div class="ttname"><a href="classvoro_1_1container__poly.html#aaaddce8c16e4df211db3cbe9f9ca83de">voro::container_poly::draw_cells_pov</a></div><div class="ttdeci">void draw_cells_pov(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00627">container.hh:627</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1radius__poly_html_a9faed3ac8ef95c646e376a7fe915fb0b"><div class="ttname"><a href="classvoro_1_1radius__poly.html#a9faed3ac8ef95c646e376a7fe915fb0b">voro::radius_poly::max_radius</a></div><div class="ttdeci">double max_radius</div><div class="ttdef"><b>Definition:</b> <a href="rad__option_8hh_source.html#l00089">rad_option.hh:89</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a624a890b979cc8f989778e0b627bad44"><div class="ttname"><a href="classvoro_1_1container__base.html#a624a890b979cc8f989778e0b627bad44">voro::container_base::~container_base</a></div><div class="ttdeci">~container_base()</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00044">container.cc:44</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a2f7bde3ec593d9f4b8c9ceb67b56f62f"><div class="ttname"><a href="classvoro_1_1container__base.html#a2f7bde3ec593d9f4b8c9ceb67b56f62f">voro::container_base::container_base</a></div><div class="ttdeci">container_base(double ax_, double bx_, double ay_, double by_, double az_, double bz_, int nx_, int ny_, int nz_, bool xperiodic_, bool yperiodic_, bool zperiodic_, int init_mem, int ps_)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00030">container.cc:30</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_aa1c0c293bae52c879eb42035a031d8e8"><div class="ttname"><a href="classvoro_1_1container__base.html#aa1c0c293bae52c879eb42035a031d8e8">voro::container_base::draw_domain_pov</a></div><div class="ttdeci">void draw_domain_pov(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00260">container.hh:260</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a1ab1b31f6fcd3080cc9fd0948df61e1a"><div class="ttname"><a href="classvoro_1_1container__base.html#a1ab1b31f6fcd3080cc9fd0948df61e1a">voro::container_base::put_locate_block</a></div><div class="ttdeci">bool put_locate_block(int &ijk, double &x, double &y, double &z)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00151">container.cc:151</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a65d29c90b0f5a3c5d018d8eabdf19a5b"><div class="ttname"><a href="classvoro_1_1container.html#a65d29c90b0f5a3c5d018d8eabdf19a5b">voro::container::compute_ghost_cell</a></div><div class="ttdeci">bool compute_ghost_cell(v_cell &c, double x, double y, double z)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00485">container.hh:485</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a50aaf382a069b102930b88976215818f"><div class="ttname"><a href="classvoro_1_1container.html#a50aaf382a069b102930b88976215818f">voro::container::container</a></div><div class="ttdeci">container(double ax_, double bx_, double ay_, double by_, double az_, double bz_, int nx_, int ny_, int nz_, bool xperiodic_, bool yperiodic_, bool zperiodic_, int init_mem)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00064">container.cc:64</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_ac1205c5c189d3dd72057c4cf9fa8891d"><div class="ttname"><a href="classvoro_1_1container__base.html#ac1205c5c189d3dd72057c4cf9fa8891d">voro::container_base::region_count</a></div><div class="ttdeci">void region_count()</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00377">container.cc:377</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a2757cfc62be2f0496eddd0fccbc14ba6"><div class="ttname"><a href="classvoro_1_1container.html#a2757cfc62be2f0496eddd0fccbc14ba6">voro::container::compute_all_cells</a></div><div class="ttdeci">void compute_all_cells()</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00435">container.cc:435</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_ae949e1e7d3207212db3c99677e4906cd"><div class="ttname"><a href="classvoro_1_1container__poly.html#ae949e1e7d3207212db3c99677e4906cd">voro::container_poly::draw_cells_pov</a></div><div class="ttdeci">void draw_cells_pov(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00645">container.hh:645</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a60907bce91cfacfa054a69872fb10ee3"><div class="ttname"><a href="classvoro_1_1container__poly.html#a60907bce91cfacfa054a69872fb10ee3">voro::container_poly::print_custom</a></div><div class="ttdeci">void print_custom(c_loop &vl, const char *format, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00656">container.hh:656</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a4c5ac89711659787eba011afbee318be"><div class="ttname"><a href="classvoro_1_1container.html#a4c5ac89711659787eba011afbee318be">voro::container::draw_particles</a></div><div class="ttdeci">void draw_particles(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00341">container.hh:341</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voro__base_html_a95d9ee6c1610afccf265198ae63b5e88"><div class="ttname"><a href="classvoro_1_1voro__base.html#a95d9ee6c1610afccf265198ae63b5e88">voro::voro_base::contains_neighbor</a></div><div class="ttdeci">bool contains_neighbor(const char *format)</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8cc_source.html#l00100">v_base.cc:100</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall__list_html_ae6d83d60ffa99fb6712445616883d1c8"><div class="ttname"><a href="classvoro_1_1wall__list.html#ae6d83d60ffa99fb6712445616883d1c8">voro::wall_list::point_inside_walls</a></div><div class="ttdeci">bool point_inside_walls(double x, double y, double z)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00075">container.hh:75</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_adaebc99132288ce43dab36fe86b5497b"><div class="ttname"><a href="classvoro_1_1container.html#adaebc99132288ce43dab36fe86b5497b">voro::container::draw_particles_pov</a></div><div class="ttdeci">void draw_particles_pov(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00360">container.hh:360</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a12b9eeac5c7f409e1d75f77876c7bd3d"><div class="ttname"><a href="classvoro_1_1container__poly.html#a12b9eeac5c7f409e1d75f77876c7bd3d">voro::container_poly::compute_cell</a></div><div class="ttdeci">bool compute_cell(v_cell &c, int ijk, int q)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00693">container.hh:693</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a5e73bd52fe92985962a248fed566737b"><div class="ttname"><a href="classvoro_1_1container.html#a5e73bd52fe92985962a248fed566737b">voro::container::find_voronoi_cell</a></div><div class="ttdeci">bool find_voronoi_cell(double x, double y, double z, double &rx, double &ry, double &rz, int &pid)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00234">container.cc:234</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voronoicell__base_html_a923ffa62bd5d62070cd29e01f3a1327a"><div class="ttname"><a href="classvoro_1_1voronoicell__base.html#a923ffa62bd5d62070cd29e01f3a1327a">voro::voronoicell_base::draw_pov</a></div><div class="ttdeci">void draw_pov(double x, double y, double z, FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="cell_8cc_source.html#l01487">cell.cc:1487</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall__list_html_ae3d367bca20c8d5714e2978ed67fe019"><div class="ttname"><a href="classvoro_1_1wall__list.html#ae3d367bca20c8d5714e2978ed67fe019">voro::wall_list::apply_walls</a></div><div class="ttdeci">bool apply_walls(c_class &c, double x, double y, double z)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00086">container.hh:86</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a78d795a863e401a5fc565c7dec31b6a6"><div class="ttname"><a href="classvoro_1_1container__base.html#a78d795a863e401a5fc565c7dec31b6a6">voro::container_base::az</a></div><div class="ttdeci">const double az</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00126">container.hh:126</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html"><div class="ttname"><a href="classvoro_1_1container__base.html">voro::container_base</a></div><div class="ttdoc">Class for representing a particle system in a three-dimensional rectangular box. </div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00115">container.hh:115</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall__list_html_a8b0402f2bfad31b7d0204d4120cd60be"><div class="ttname"><a href="classvoro_1_1wall__list.html#a8b0402f2bfad31b7d0204d4120cd60be">voro::wall_list::~wall_list</a></div><div class="ttdeci">~wall_list()</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00523">container.cc:523</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voro__base_html_a4309aca04ab561bd3b3921e9b73016a4"><div class="ttname"><a href="classvoro_1_1voro__base.html#a4309aca04ab561bd3b3921e9b73016a4">voro::voro_base::nxyz</a></div><div class="ttdeci">const int nxyz</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00039">v_base.hh:39</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voro__base_html_aad5f41101fce781214d2f0b69487a729"><div class="ttname"><a href="classvoro_1_1voro__base.html#aad5f41101fce781214d2f0b69487a729">voro::voro_base::nxy</a></div><div class="ttdeci">const int nxy</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00036">v_base.hh:36</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voro__base_html_ac8986e621bd70cf5113e231cb8694d37"><div class="ttname"><a href="classvoro_1_1voro__base.html#ac8986e621bd70cf5113e231cb8694d37">voro::voro_base::boxx</a></div><div class="ttdeci">const double boxx</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00041">v_base.hh:41</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_accce43f61281a3c5d69893ad5187e3ec"><div class="ttname"><a href="classvoro_1_1container.html#accce43f61281a3c5d69893ad5187e3ec">voro::container::sum_cell_volumes</a></div><div class="ttdeci">double sum_cell_volumes()</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00456">container.cc:456</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_ad600a135ee01c2f1c08a5b9da58398ad"><div class="ttname"><a href="classvoro_1_1container.html#ad600a135ee01c2f1c08a5b9da58398ad">voro::container::compute_cell</a></div><div class="ttdeci">bool compute_cell(v_cell &c, int ijk, int q)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00472">container.hh:472</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_acd3bdff20b8b11a3e606e5581ebf3c06"><div class="ttname"><a href="classvoro_1_1container__base.html#acd3bdff20b8b11a3e606e5581ebf3c06">voro::container_base::zperiodic</a></div><div class="ttdeci">const bool zperiodic</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00137">container.hh:137</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a30dbb059792c199f2526c13990cd8daf"><div class="ttname"><a href="classvoro_1_1container__base.html#a30dbb059792c199f2526c13990cd8daf">voro::container_base::initialize_search</a></div><div class="ttdeci">void initialize_search(int ci, int cj, int ck, int ijk, int &i, int &j, int &k, int &disp)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00211">container.hh:211</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a5c67c9998e4f174fb217967dcb41c7f3"><div class="ttname"><a href="classvoro_1_1container.html#a5c67c9998e4f174fb217967dcb41c7f3">voro::container::put</a></div><div class="ttdeci">void put(int n, double x, double y, double z)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00087">container.cc:87</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a9808b60d80f1d3ccc06ebd0a2495ac7a"><div class="ttname"><a href="classvoro_1_1container.html#a9808b60d80f1d3ccc06ebd0a2495ac7a">voro::container::compute_cell</a></div><div class="ttdeci">bool compute_cell(v_cell &c, c_loop &vl)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00460">container.hh:460</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a1d782b31e7d6f5b2040ee2d25753cb53"><div class="ttname"><a href="classvoro_1_1container__poly.html#a1d782b31e7d6f5b2040ee2d25753cb53">voro::container_poly::container_poly</a></div><div class="ttdeci">container_poly(double ax_, double bx_, double ay_, double by_, double az_, double bz_, int nx_, int ny_, int nz_, bool xperiodic_, bool yperiodic_, bool zperiodic_, int init_mem)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00079">container.cc:79</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall_html_ae49edf1ae1036be9ffaa5c2bd7fcd82d"><div class="ttname"><a href="classvoro_1_1wall.html#ae49edf1ae1036be9ffaa5c2bd7fcd82d">voro::wall::point_inside</a></div><div class="ttdeci">virtual bool point_inside(double x, double y, double z)=0</div></div>
|
|
<div class="ttc" id="classvoro_1_1wall_html"><div class="ttname"><a href="classvoro_1_1wall.html">voro::wall</a></div><div class="ttdoc">Pure virtual class from which wall objects are derived. </div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00031">container.hh:31</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a05a979d24c3d0fefe9f5cd96174863f8"><div class="ttname"><a href="classvoro_1_1container__base.html#a05a979d24c3d0fefe9f5cd96174863f8">voro::container_base::yperiodic</a></div><div class="ttdeci">const bool yperiodic</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00134">container.hh:134</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voro__base_html_afd53f018c9641c8b8066e9429c88a4e0"><div class="ttname"><a href="classvoro_1_1voro__base.html#afd53f018c9641c8b8066e9429c88a4e0">voro::voro_base::boxz</a></div><div class="ttdeci">const double boxz</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00045">v_base.hh:45</a></div></div>
|
|
<div class="ttc" id="v__base_8hh_html"><div class="ttname"><a href="v__base_8hh.html">v_base.hh</a></div><div class="ttdoc">Header file for the base Voronoi container class. </div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_ab33ca2a8d7282d65a731d854d27906f2"><div class="ttname"><a href="classvoro_1_1container__base.html#ab33ca2a8d7282d65a731d854d27906f2">voro::container_base::ax</a></div><div class="ttdeci">const double ax</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00118">container.hh:118</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a0012f95f5666a347e6585efc76b63b83"><div class="ttname"><a href="classvoro_1_1container__poly.html#a0012f95f5666a347e6585efc76b63b83">voro::container_poly::clear</a></div><div class="ttdeci">void clear()</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00390">container.cc:390</a></div></div>
|
|
<div class="ttc" id="common_8hh_html"><div class="ttname"><a href="common_8hh.html">common.hh</a></div><div class="ttdoc">Header file for the small helper functions. </div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_ad9fe437b46f1e58908c393955e6d4217"><div class="ttname"><a href="classvoro_1_1container__base.html#ad9fe437b46f1e58908c393955e6d4217">voro::container_base::total_particles</a></div><div class="ttdeci">int total_particles()</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00267">container.hh:267</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html"><div class="ttname"><a href="classvoro_1_1container__poly.html">voro::container_poly</a></div><div class="ttdoc">Extension of the container_base class for computing radical Voronoi tessellations. </div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00507">container.hh:507</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a866cce7547f14634e432d510050962ae"><div class="ttname"><a href="classvoro_1_1container__poly.html#a866cce7547f14634e432d510050962ae">voro::container_poly::draw_particles_pov</a></div><div class="ttdeci">void draw_particles_pov(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00590">container.hh:590</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall__list_html_a248fb5d008de9a5a97d4720d47794698"><div class="ttname"><a href="classvoro_1_1wall__list.html#a248fb5d008de9a5a97d4720d47794698">voro::wall_list::wall_list</a></div><div class="ttdeci">wall_list()</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00518">container.cc:518</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voronoicell__base_html_a095c6bfc1b9b7a087d0b35b443e5c023"><div class="ttname"><a href="classvoro_1_1voronoicell__base.html#a095c6bfc1b9b7a087d0b35b443e5c023">voro::voronoicell_base::output_custom</a></div><div class="ttdeci">void output_custom(const char *format, FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="cell_8hh_source.html#l00182">cell.hh:182</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall__list_html_a292491bc99b6bbc819bb3720fcfb08a1"><div class="ttname"><a href="classvoro_1_1wall__list.html#a292491bc99b6bbc819bb3720fcfb08a1">voro::wall_list::wel</a></div><div class="ttdeci">wall ** wel</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00095">container.hh:95</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_af39b3d55e12a5b1d6acbab77d762cff3"><div class="ttname"><a href="classvoro_1_1container.html#af39b3d55e12a5b1d6acbab77d762cff3">voro::container::draw_cells_pov</a></div><div class="ttdeci">void draw_cells_pov(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00403">container.hh:403</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_af67af614b2b3ad084dfab83470fa8616"><div class="ttname"><a href="classvoro_1_1container__poly.html#af67af614b2b3ad084dfab83470fa8616">voro::container_poly::draw_particles</a></div><div class="ttdeci">void draw_particles(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00548">container.hh:548</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voronoicell_html"><div class="ttname"><a href="classvoro_1_1voronoicell.html">voro::voronoicell</a></div><div class="ttdoc">Extension of the voronoicell_base class to represent a Voronoi cell without neighbor information...</div><div class="ttdef"><b>Definition:</b> <a href="cell_8hh_source.html#l00300">cell.hh:300</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_ad90375e99cea7db7c1b82d00853e2659"><div class="ttname"><a href="classvoro_1_1container.html#ad90375e99cea7db7c1b82d00853e2659">voro::container::draw_particles_pov</a></div><div class="ttdeci">void draw_particles_pov(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00366">container.hh:366</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a09c379ffe31e8679a29a727f23af4564"><div class="ttname"><a href="classvoro_1_1container__poly.html#a09c379ffe31e8679a29a727f23af4564">voro::container_poly::compute_ghost_cell</a></div><div class="ttdeci">bool compute_ghost_cell(v_cell &c, double x, double y, double z, double r)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00707">container.hh:707</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a61689312fb6f8ee36f1fbb0fe00e4fe3"><div class="ttname"><a href="classvoro_1_1container__poly.html#a61689312fb6f8ee36f1fbb0fe00e4fe3">voro::container_poly::put</a></div><div class="ttdeci">void put(int n, double x, double y, double z, double r)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00100">container.cc:100</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_ac0700e38ce6ed742dcb52ab6523b1956"><div class="ttname"><a href="classvoro_1_1container__poly.html#ac0700e38ce6ed742dcb52ab6523b1956">voro::container_poly::draw_cells_gnuplot</a></div><div class="ttdeci">void draw_cells_gnuplot(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00610">container.hh:610</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voro__compute_html"><div class="ttname"><a href="classvoro_1_1voro__compute.html">voro::voro_compute</a></div><div class="ttdoc">Template for carrying out Voronoi cell computations. </div><div class="ttdef"><b>Definition:</b> <a href="v__compute_8hh_source.html#l00039">v_compute.hh:39</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_acf0d0e3a7cfb9c7445e99afc57dbee94"><div class="ttname"><a href="classvoro_1_1container.html#acf0d0e3a7cfb9c7445e99afc57dbee94">voro::container::draw_particles</a></div><div class="ttdeci">void draw_particles(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00335">container.hh:335</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_ae769a416d7a5520eddf026cec6f7fda6"><div class="ttname"><a href="classvoro_1_1container__base.html#ae769a416d7a5520eddf026cec6f7fda6">voro::container_base::by</a></div><div class="ttdeci">const double by</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00124">container.hh:124</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_ac6ec5c8fec1cec5185af19bb21832fcb"><div class="ttname"><a href="classvoro_1_1container.html#ac6ec5c8fec1cec5185af19bb21832fcb">voro::container::draw_cells_pov</a></div><div class="ttdeci">void draw_cells_pov(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00414">container.hh:414</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a477ecfe9e0943e71a2e389d7cc85ab20"><div class="ttname"><a href="classvoro_1_1container__poly.html#a477ecfe9e0943e71a2e389d7cc85ab20">voro::container_poly::draw_particles_pov</a></div><div class="ttdeci">void draw_particles_pov(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00584">container.hh:584</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_ab1efabec22bdbff42302d94620a71937"><div class="ttname"><a href="classvoro_1_1container__poly.html#ab1efabec22bdbff42302d94620a71937">voro::container_poly::draw_cells_gnuplot</a></div><div class="ttdeci">void draw_cells_gnuplot(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00600">container.hh:600</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a35c0c0b78ca0ba3fa10e6a9c4eece492"><div class="ttname"><a href="classvoro_1_1container.html#a35c0c0b78ca0ba3fa10e6a9c4eece492">voro::container::print_custom</a></div><div class="ttdeci">void print_custom(c_loop &vl, const char *format, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00432">container.hh:432</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voro__base_html_a83da5297e87173733d92d9024cebbbdb"><div class="ttname"><a href="classvoro_1_1voro__base.html#a83da5297e87173733d92d9024cebbbdb">voro::voro_base::ny</a></div><div class="ttdeci">const int ny</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00030">v_base.hh:30</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall__list_html_abfc54768de5b596237d7eef5f589fe90"><div class="ttname"><a href="classvoro_1_1wall__list.html#abfc54768de5b596237d7eef5f589fe90">voro::wall_list::walls</a></div><div class="ttdeci">wall ** walls</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00055">container.hh:55</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_ae01c610b46aad0aae4998697b69a4b1c"><div class="ttname"><a href="classvoro_1_1container__poly.html#ae01c610b46aad0aae4998697b69a4b1c">voro::container_poly::compute_cell</a></div><div class="ttdeci">bool compute_cell(v_cell &c, c_loop &vl)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00681">container.hh:681</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_aa0fe8c92c66463236a05924d466256da"><div class="ttname"><a href="classvoro_1_1container__base.html#aa0fe8c92c66463236a05924d466256da">voro::container_base::add_particle_memory</a></div><div class="ttdeci">void add_particle_memory(int i)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00302">container.cc:302</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a3f9a6147040c60ff579dcd96c05800c9"><div class="ttname"><a href="classvoro_1_1container.html#a3f9a6147040c60ff579dcd96c05800c9">voro::container::draw_cells_pov</a></div><div class="ttdeci">void draw_cells_pov(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00421">container.hh:421</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container_html_a39c6928b9e5d4351b01df6bbd4b8b72c"><div class="ttname"><a href="classvoro_1_1container.html#a39c6928b9e5d4351b01df6bbd4b8b72c">voro::container::draw_particles</a></div><div class="ttdeci">void draw_particles(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00326">container.hh:326</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1particle__order_html"><div class="ttname"><a href="classvoro_1_1particle__order.html">voro::particle_order</a></div><div class="ttdoc">A class for storing ordering information when particles are added to a container. ...</div><div class="ttdef"><b>Definition:</b> <a href="c__loops_8hh_source.html#l00037">c_loops.hh:37</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a08db44d4d57b8b19f1e101cc40c82e85"><div class="ttname"><a href="classvoro_1_1container__base.html#a08db44d4d57b8b19f1e101cc40c82e85">voro::container_base::frac_pos</a></div><div class="ttdeci">void frac_pos(double x, double y, double z, double ci, double cj, double ck, double &fx, double &fy, double &fz)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00224">container.hh:224</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall__list_html_aca50327f246b61f6aeef5337327d957d"><div class="ttname"><a href="classvoro_1_1wall__list.html#aca50327f246b61f6aeef5337327d957d">voro::wall_list::add_wall</a></div><div class="ttdeci">void add_wall(wall *w)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00063">container.hh:63</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1wall_html_ab54b4c6d37223584f1fbf653d0b17d14"><div class="ttname"><a href="classvoro_1_1wall.html#ab54b4c6d37223584f1fbf653d0b17d14">voro::wall::cut_cell</a></div><div class="ttdeci">virtual bool cut_cell(voronoicell &c, double x, double y, double z)=0</div></div>
|
|
<div class="ttc" id="classvoro_1_1voro__base_html_aae461fbdf42c8975fb43d963d002298f"><div class="ttname"><a href="classvoro_1_1voro__base.html#aae461fbdf42c8975fb43d963d002298f">voro::voro_base::nz</a></div><div class="ttdeci">const int nz</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00032">v_base.hh:32</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_a8a20a1a70dd32c3323307be038bebb1d"><div class="ttname"><a href="classvoro_1_1container__poly.html#a8a20a1a70dd32c3323307be038bebb1d">voro::container_poly::draw_particles</a></div><div class="ttdeci">void draw_particles(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00565">container.hh:565</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a6ff9d18058ab53c955cd44dea733e4fd"><div class="ttname"><a href="classvoro_1_1container__base.html#a6ff9d18058ab53c955cd44dea733e4fd">voro::container_base::draw_domain_pov</a></div><div class="ttdeci">void draw_domain_pov(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00497">container.cc:497</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1radius__mono_html"><div class="ttname"><a href="classvoro_1_1radius__mono.html">voro::radius_mono</a></div><div class="ttdoc">Class containing all of the routines that are specific to computing the regular Voronoi tessellation...</div><div class="ttdef"><b>Definition:</b> <a href="rad__option_8hh_source.html#l00024">rad_option.hh:24</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__poly_html_ad360a8ec2c8d59b69b65f34fdba92887"><div class="ttname"><a href="classvoro_1_1container__poly.html#ad360a8ec2c8d59b69b65f34fdba92887">voro::container_poly::draw_cells_gnuplot</a></div><div class="ttdeci">void draw_cells_gnuplot(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container_8hh_source.html#l00617">container.hh:617</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1container__base_html_a290c21ba694d02231d49d14881dfcfd1"><div class="ttname"><a href="classvoro_1_1container__base.html#a290c21ba694d02231d49d14881dfcfd1">voro::container_base::point_inside</a></div><div class="ttdeci">bool point_inside(double x, double y, double z)</div><div class="ttdef"><b>Definition:</b> <a href="container_8cc_source.html#l00481">container.cc:481</a></div></div>
|
|
<div class="ttc" id="classvoro_1_1voro__base_html_a8aed82f1468c9bb7e2a779ea53a22594"><div class="ttname"><a href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">voro::voro_base::nx</a></div><div class="ttdeci">const int nx</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00028">v_base.hh:28</a></div></div>
|
|
</div><!-- fragment --></div><!-- contents -->
|
|
<!-- start footer part -->
|
|
<hr class="footer"/><address class="footer"><small>
|
|
Generated on Thu Oct 17 2013 11:14:00 for Voro++ by  <a href="http://www.doxygen.org/index.html">
|
|
<img class="footer" src="doxygen.png" alt="doxygen"/>
|
|
</a> 1.8.5
|
|
</small></address>
|
|
</body>
|
|
</html>
|