819 lines
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819 lines
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<div class="title">container_prd.hh</div> </div>
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<a href="container__prd_8hh.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// Voro++, a 3D cell-based Voronoi library</span></div>
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<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">//</span></div>
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<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// Author : Chris H. Rycroft (LBL / UC Berkeley)</span></div>
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<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Email : chr@alum.mit.edu</span></div>
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<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// Date : August 30th 2011</span></div>
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<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment"></span></div>
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<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">/** \file container_prd.hh</span></div>
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<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment"> * \brief Header file for the container_periodic_base and related classes. */</span></div>
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<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> </div>
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<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#ifndef VOROPP_CONTAINER_PRD_HH</span></div>
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<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor"></span><span class="preprocessor">#define VOROPP_CONTAINER_PRD_HH</span></div>
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<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor"></span></div>
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<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include <cstdio></span></div>
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<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include <vector></span></div>
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<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> </div>
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<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include "<a class="code" href="config_8hh.html">config.hh</a>"</span></div>
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<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="preprocessor">#include "<a class="code" href="common_8hh.html">common.hh</a>"</span></div>
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<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="preprocessor">#include "<a class="code" href="v__base_8hh.html">v_base.hh</a>"</span></div>
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<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor">#include "<a class="code" href="cell_8hh.html">cell.hh</a>"</span></div>
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<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="preprocessor">#include "<a class="code" href="c__loops_8hh.html">c_loops.hh</a>"</span></div>
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<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="preprocessor">#include "<a class="code" href="v__compute_8hh.html">v_compute.hh</a>"</span></div>
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<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="preprocessor">#include "<a class="code" href="unitcell_8hh.html">unitcell.hh</a>"</span></div>
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<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="preprocessor">#include "<a class="code" href="rad__option_8hh.html">rad_option.hh</a>"</span></div>
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<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> </div>
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<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="keyword">namespace </span>voro {</div>
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<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment"></span></div>
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<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">/** \brief Class for representing a particle system in a 3D periodic</span></div>
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<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment"> * non-orthogonal periodic domain.</span></div>
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<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment"> *</span></div>
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<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment"> * This class represents a particle system in a three-dimensional</span></div>
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<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment"> * non-orthogonal periodic domain. The domain is defined by three periodicity</span></div>
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<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment"> * vectors (bx,0,0), (bxy,by,0), and (bxz,byz,bz) that represent a</span></div>
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<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment"> * parallelepiped. Internally, the class stores particles in the box 0<x<bx,</span></div>
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<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="comment"> * 0<y<by, 0<z<bz, and constructs periodic images of particles that displaced</span></div>
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<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="comment"> * by the three periodicity vectors when they are necessary for the</span></div>
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<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="comment"> * computation. The internal memory structure for this class is significantly</span></div>
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<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="comment"> * different from the container_base class in order to handle the dynamic</span></div>
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<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="comment"> * construction of these periodic images.</span></div>
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<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="comment"> *</span></div>
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<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="comment"> * The class is derived from the unitcell class, which encapsulates information</span></div>
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<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="comment"> * about the domain geometry, and the voro_base class, which encapsulates</span></div>
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<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="comment"> * information about the underlying computational grid. */</span></div>
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<div class="line"><a name="l00043"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html"> 43</a></span> <span class="keyword">class </span><a class="code" href="classvoro_1_1container__periodic__base.html">container_periodic_base</a> : <span class="keyword">public</span> <a class="code" href="classvoro_1_1unitcell.html">unitcell</a>, <span class="keyword">public</span> <a class="code" href="classvoro_1_1voro__base.html">voro_base</a> {</div>
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<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  <span class="keyword">public</span>:<span class="comment"></span></div>
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<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="comment"> /** The lower y index (inclusive) of the primary domain within</span></div>
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<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="comment"> * the block structure. */</span></div>
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<div class="line"><a name="l00047"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#a407b759a2c2d6baec5183e18a726a4e6"> 47</a></span>  <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a407b759a2c2d6baec5183e18a726a4e6">ey</a>;<span class="comment"></span></div>
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<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="comment"> /** The lower z index (inclusive) of the primary domain within</span></div>
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<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> <span class="comment"> * the block structure. */</span></div>
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<div class="line"><a name="l00050"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#a9920ab99f51190399ceda8fb8689364f"> 50</a></span>  <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a9920ab99f51190399ceda8fb8689364f">ez</a>;<span class="comment"></span></div>
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<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> <span class="comment"> /** The upper y index (exclusive) of the primary domain within</span></div>
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<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> <span class="comment"> * the block structure. */</span></div>
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<div class="line"><a name="l00053"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#a012ffc20dd6379bcbd26ddc0c5cc8591"> 53</a></span>  <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a012ffc20dd6379bcbd26ddc0c5cc8591">wy</a>;<span class="comment"></span></div>
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<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> <span class="comment"> /** The upper z index (exclusive) of the primary domain within</span></div>
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<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> <span class="comment"> * the block structure. */</span></div>
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<div class="line"><a name="l00056"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#afe16d21568925f78421122cdfb7b0cc0"> 56</a></span>  <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__periodic__base.html#afe16d21568925f78421122cdfb7b0cc0">wz</a>;<span class="comment"></span></div>
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<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> <span class="comment"> /** The total size of the block structure (including images) in</span></div>
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<div class="line"><a name="l00058"></a><span class="lineno"> 58</span> <span class="comment"> * the y direction. */</span></div>
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<div class="line"><a name="l00059"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#aa143ce1ecd9093f7c1889a0481b4cbb5"> 59</a></span>  <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__periodic__base.html#aa143ce1ecd9093f7c1889a0481b4cbb5">oy</a>;<span class="comment"></span></div>
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<div class="line"><a name="l00060"></a><span class="lineno"> 60</span> <span class="comment"> /** The total size of the block structure (including images) in</span></div>
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<div class="line"><a name="l00061"></a><span class="lineno"> 61</span> <span class="comment"> * the z direction. */</span></div>
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<div class="line"><a name="l00062"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#ab1f18c51495f684dfc4d3372f9b311da"> 62</a></span>  <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__periodic__base.html#ab1f18c51495f684dfc4d3372f9b311da">oz</a>;<span class="comment"></span></div>
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<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> <span class="comment"> /** The total number of blocks. */</span></div>
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<div class="line"><a name="l00064"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#ae1dfc876e56ec254053c7672b4454313"> 64</a></span>  <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__periodic__base.html#ae1dfc876e56ec254053c7672b4454313">oxyz</a>;<span class="comment"></span></div>
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<div class="line"><a name="l00065"></a><span class="lineno"> 65</span> <span class="comment"> /** This array holds the numerical IDs of each particle in each</span></div>
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<div class="line"><a name="l00066"></a><span class="lineno"> 66</span> <span class="comment"> * computational box. */</span></div>
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<div class="line"><a name="l00067"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#a5abecf243780e08dd6cce6f5dd270c76"> 67</a></span>  <span class="keywordtype">int</span> **<a class="code" href="classvoro_1_1container__periodic__base.html#a5abecf243780e08dd6cce6f5dd270c76">id</a>;<span class="comment"></span></div>
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<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> <span class="comment"> /** A two dimensional array holding particle positions. For the</span></div>
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<div class="line"><a name="l00069"></a><span class="lineno"> 69</span> <span class="comment"> * derived container_poly class, this also holds particle</span></div>
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<div class="line"><a name="l00070"></a><span class="lineno"> 70</span> <span class="comment"> * radii. */</span></div>
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<div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608"> 71</a></span>  <span class="keywordtype">double</span> **<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>;<span class="comment"></span></div>
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<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> <span class="comment"> /** This array holds the number of particles within each</span></div>
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<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> <span class="comment"> * computational box of the container. */</span></div>
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<div class="line"><a name="l00074"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#a8ae965b9dbb02a92e8dcb0d082d625a2"> 74</a></span>  <span class="keywordtype">int</span> *<a class="code" href="classvoro_1_1container__periodic__base.html#a8ae965b9dbb02a92e8dcb0d082d625a2">co</a>;<span class="comment"></span></div>
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<div class="line"><a name="l00075"></a><span class="lineno"> 75</span> <span class="comment"> /** This array holds the maximum amount of particle memory for</span></div>
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<div class="line"><a name="l00076"></a><span class="lineno"> 76</span> <span class="comment"> * each computational box of the container. If the number of</span></div>
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<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> <span class="comment"> * particles in a particular box ever approaches this limit,</span></div>
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<div class="line"><a name="l00078"></a><span class="lineno"> 78</span> <span class="comment"> * more is allocated using the add_particle_memory() function.</span></div>
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<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> <span class="comment"> */</span></div>
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<div class="line"><a name="l00080"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#a4ff4effc81e7b8908cda31f0c8c5ad70"> 80</a></span>  <span class="keywordtype">int</span> *<a class="code" href="classvoro_1_1container__periodic__base.html#a4ff4effc81e7b8908cda31f0c8c5ad70">mem</a>;<span class="comment"></span></div>
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<div class="line"><a name="l00081"></a><span class="lineno"> 81</span> <span class="comment"> /** An array holding information about periodic image</span></div>
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<div class="line"><a name="l00082"></a><span class="lineno"> 82</span> <span class="comment"> * construction at a given location. */</span></div>
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<div class="line"><a name="l00083"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#a90658551a7621bedfea141f052443fe1"> 83</a></span>  <span class="keywordtype">char</span> *<a class="code" href="classvoro_1_1container__periodic__base.html#a90658551a7621bedfea141f052443fe1">img</a>;<span class="comment"></span></div>
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<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> <span class="comment"> /** The initial amount of memory to allocate for particles</span></div>
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<div class="line"><a name="l00085"></a><span class="lineno"> 85</span> <span class="comment"> * for each block. */</span></div>
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<div class="line"><a name="l00086"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#adeaa9eab58ba59f2fa3d7176ce617ff1"> 86</a></span>  <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__periodic__base.html#adeaa9eab58ba59f2fa3d7176ce617ff1">init_mem</a>;<span class="comment"></span></div>
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<div class="line"><a name="l00087"></a><span class="lineno"> 87</span> <span class="comment"> /** The amount of memory in the array structure for each</span></div>
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<div class="line"><a name="l00088"></a><span class="lineno"> 88</span> <span class="comment"> * particle. This is set to 3 when the basic class is</span></div>
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<div class="line"><a name="l00089"></a><span class="lineno"> 89</span> <span class="comment"> * initialized, so that the array holds (x,y,z) positions. If</span></div>
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<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> <span class="comment"> * the container class is initialized as part of the derived</span></div>
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<div class="line"><a name="l00091"></a><span class="lineno"> 91</span> <span class="comment"> * class container_poly, then this is set to 4, to also hold</span></div>
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<div class="line"><a name="l00092"></a><span class="lineno"> 92</span> <span class="comment"> * the particle radii. */</span></div>
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<div class="line"><a name="l00093"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e"> 93</a></span>  <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>;</div>
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<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  <a class="code" href="classvoro_1_1container__periodic__base.html#a5319c976a873f9b10f80f9038f3460bd">container_periodic_base</a>(<span class="keywordtype">double</span> bx_,<span class="keywordtype">double</span> bxy_,<span class="keywordtype">double</span> by_,<span class="keywordtype">double</span> bxz_,<span class="keywordtype">double</span> byz_,<span class="keywordtype">double</span> bz_,</div>
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<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  <span class="keywordtype">int</span> nx_,<span class="keywordtype">int</span> ny_,<span class="keywordtype">int</span> nz_,<span class="keywordtype">int</span> init_mem_,<span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>);</div>
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<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  <a class="code" href="classvoro_1_1container__periodic__base.html#a4eacfa1389d290c753df07df3c88e0a7">~container_periodic_base</a>();<span class="comment"></span></div>
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<div class="line"><a name="l00097"></a><span class="lineno"> 97</span> <span class="comment"> /** Prints all particles in the container, including those that</span></div>
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<div class="line"><a name="l00098"></a><span class="lineno"> 98</span> <span class="comment"> * have been constructed in image blocks. */</span></div>
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<div class="line"><a name="l00099"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#ac931a6c1cab4b2e910a0d07969b38785"> 99</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#ac931a6c1cab4b2e910a0d07969b38785">print_all_particles</a>() {</div>
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<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  <span class="keywordtype">int</span> ijk,q;</div>
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<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  <span class="keywordflow">for</span>(ijk=0;ijk<<a class="code" href="classvoro_1_1container__periodic__base.html#ae1dfc876e56ec254053c7672b4454313">oxyz</a>;ijk++) <span class="keywordflow">for</span>(q=0;q<<a class="code" href="classvoro_1_1container__periodic__base.html#a8ae965b9dbb02a92e8dcb0d082d625a2">co</a>[ijk];q++)</div>
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<div class="line"><a name="l00102"></a><span class="lineno"> 102</span>  printf(<span class="stringliteral">"%d %g %g %g\n"</span>,<span class="keywordtype">id</span>[ijk][q],<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[ijk][<a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>*q],<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[ijk][<a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>*q+1],<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[ijk][<a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>*q+2]);</div>
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<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  }</div>
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<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a8462c3a3079586196e2bd9a764283173">region_count</a>();<span class="comment"></span></div>
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<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> <span class="comment"> /** Initializes the Voronoi cell prior to a compute_cell</span></div>
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<div class="line"><a name="l00106"></a><span class="lineno"> 106</span> <span class="comment"> * operation for a specific particle being carried out by a</span></div>
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<div class="line"><a name="l00107"></a><span class="lineno"> 107</span> <span class="comment"> * voro_compute class. The cell is initialized to be the</span></div>
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<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> <span class="comment"> * pre-computed unit Voronoi cell based on planes formed by</span></div>
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<div class="line"><a name="l00109"></a><span class="lineno"> 109</span> <span class="comment"> * periodic images of the particle.</span></div>
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<div class="line"><a name="l00110"></a><span class="lineno"> 110</span> <span class="comment"> * \param[in,out] c a reference to a voronoicell object.</span></div>
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<div class="line"><a name="l00111"></a><span class="lineno"> 111</span> <span class="comment"> * \param[in] ijk the block that the particle is within.</span></div>
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<div class="line"><a name="l00112"></a><span class="lineno"> 112</span> <span class="comment"> * \param[in] q the index of the particle within its block.</span></div>
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<div class="line"><a name="l00113"></a><span class="lineno"> 113</span> <span class="comment"> * \param[in] (ci,cj,ck) the coordinates of the block in the</span></div>
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<div class="line"><a name="l00114"></a><span class="lineno"> 114</span> <span class="comment"> * container coordinate system.</span></div>
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<div class="line"><a name="l00115"></a><span class="lineno"> 115</span> <span class="comment"> * \param[out] (i,j,k) the coordinates of the test block</span></div>
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<div class="line"><a name="l00116"></a><span class="lineno"> 116</span> <span class="comment"> * relative to the voro_compute</span></div>
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<div class="line"><a name="l00117"></a><span class="lineno"> 117</span> <span class="comment"> * coordinate system.</span></div>
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<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> <span class="comment"> * \param[out] (x,y,z) the position of the particle.</span></div>
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<div class="line"><a name="l00119"></a><span class="lineno"> 119</span> <span class="comment"> * \param[out] disp a block displacement used internally by the</span></div>
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<div class="line"><a name="l00120"></a><span class="lineno"> 120</span> <span class="comment"> * compute_cell routine.</span></div>
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<div class="line"><a name="l00121"></a><span class="lineno"> 121</span> <span class="comment"> * \return False if the plane cuts applied by walls completely</span></div>
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<div class="line"><a name="l00122"></a><span class="lineno"> 122</span> <span class="comment"> * removed the cell, true otherwise. */</span></div>
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<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell></div>
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<div class="line"><a name="l00124"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#ae540389dc8845562c5f8cd45cec71edd"> 124</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__periodic__base.html#ae540389dc8845562c5f8cd45cec71edd">initialize_voronoicell</a>(v_cell &c,<span class="keywordtype">int</span> ijk,<span class="keywordtype">int</span> q,<span class="keywordtype">int</span> ci,<span class="keywordtype">int</span> cj,<span class="keywordtype">int</span> ck,<span class="keywordtype">int</span> &i,<span class="keywordtype">int</span> &j,<span class="keywordtype">int</span> &k,<span class="keywordtype">double</span> &x,<span class="keywordtype">double</span> &y,<span class="keywordtype">double</span> &z,<span class="keywordtype">int</span> &disp) {</div>
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<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  c=<a class="code" href="classvoro_1_1unitcell.html#a0844f70778cc7b19024ed28a2c7ad02c">unit_voro</a>;</div>
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<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  <span class="keywordtype">double</span> *pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[ijk]+<a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>*q;</div>
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<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  x=*(pp++);y=*(pp++);z=*pp;</div>
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<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  i=<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>;j=<a class="code" href="classvoro_1_1container__periodic__base.html#a407b759a2c2d6baec5183e18a726a4e6">ey</a>;k=<a class="code" href="classvoro_1_1container__periodic__base.html#a9920ab99f51190399ceda8fb8689364f">ez</a>;</div>
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<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
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<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00131"></a><span class="lineno"> 131</span> <span class="comment"> /** Initializes parameters for a find_voronoi_cell call within</span></div>
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<div class="line"><a name="l00132"></a><span class="lineno"> 132</span> <span class="comment"> * the voro_compute template.</span></div>
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<div class="line"><a name="l00133"></a><span class="lineno"> 133</span> <span class="comment"> * \param[in] (ci,cj,ck) the coordinates of the test block in</span></div>
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<div class="line"><a name="l00134"></a><span class="lineno"> 134</span> <span class="comment"> * the container coordinate system.</span></div>
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<div class="line"><a name="l00135"></a><span class="lineno"> 135</span> <span class="comment"> * \param[in] ijk the index of the test block</span></div>
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<div class="line"><a name="l00136"></a><span class="lineno"> 136</span> <span class="comment"> * \param[out] (i,j,k) the coordinates of the test block</span></div>
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<div class="line"><a name="l00137"></a><span class="lineno"> 137</span> <span class="comment"> * relative to the voro_compute</span></div>
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<div class="line"><a name="l00138"></a><span class="lineno"> 138</span> <span class="comment"> * coordinate system.</span></div>
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<div class="line"><a name="l00139"></a><span class="lineno"> 139</span> <span class="comment"> * \param[out] disp a block displacement used internally by the</span></div>
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<div class="line"><a name="l00140"></a><span class="lineno"> 140</span> <span class="comment"> * find_voronoi_cell routine (but not needed</span></div>
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<div class="line"><a name="l00141"></a><span class="lineno"> 141</span> <span class="comment"> * in this instance.) */</span></div>
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<div class="line"><a name="l00142"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#a812ed5572fcfece48b73517fcf913ec0"> 142</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a812ed5572fcfece48b73517fcf913ec0">initialize_search</a>(<span class="keywordtype">int</span> ci,<span class="keywordtype">int</span> cj,<span class="keywordtype">int</span> ck,<span class="keywordtype">int</span> ijk,<span class="keywordtype">int</span> &i,<span class="keywordtype">int</span> &j,<span class="keywordtype">int</span> &k,<span class="keywordtype">int</span> &disp) {</div>
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<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  i=<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>;j=<a class="code" href="classvoro_1_1container__periodic__base.html#a407b759a2c2d6baec5183e18a726a4e6">ey</a>;k=<a class="code" href="classvoro_1_1container__periodic__base.html#a9920ab99f51190399ceda8fb8689364f">ez</a>;</div>
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<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00145"></a><span class="lineno"> 145</span> <span class="comment"> /** Returns the position of a particle currently being computed</span></div>
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<div class="line"><a name="l00146"></a><span class="lineno"> 146</span> <span class="comment"> * relative to the computational block that it is within. It is</span></div>
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<div class="line"><a name="l00147"></a><span class="lineno"> 147</span> <span class="comment"> * used to select the optimal worklist entry to use.</span></div>
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<div class="line"><a name="l00148"></a><span class="lineno"> 148</span> <span class="comment"> * \param[in] (x,y,z) the position of the particle.</span></div>
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<div class="line"><a name="l00149"></a><span class="lineno"> 149</span> <span class="comment"> * \param[in] (ci,cj,ck) the block that the particle is within.</span></div>
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<div class="line"><a name="l00150"></a><span class="lineno"> 150</span> <span class="comment"> * \param[out] (fx,fy,fz) the position relative to the block.</span></div>
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<div class="line"><a name="l00151"></a><span class="lineno"> 151</span> <span class="comment"> */</span></div>
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<div class="line"><a name="l00152"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#a4f637efc5e56874aa9d68f44505e042c"> 152</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a4f637efc5e56874aa9d68f44505e042c">frac_pos</a>(<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">double</span> ci,<span class="keywordtype">double</span> cj,<span class="keywordtype">double</span> ck,<span class="keywordtype">double</span> &fx,<span class="keywordtype">double</span> &fy,<span class="keywordtype">double</span> &fz) {</div>
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<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  fx=x-<a class="code" href="classvoro_1_1voro__base.html#ac8986e621bd70cf5113e231cb8694d37">boxx</a>*ci;</div>
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<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  fy=y-<a class="code" href="classvoro_1_1voro__base.html#a3ad6b0eefbdff03e92d30f5035defdd1">boxy</a>*(cj-<a class="code" href="classvoro_1_1container__periodic__base.html#a407b759a2c2d6baec5183e18a726a4e6">ey</a>);</div>
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<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  fz=z-<a class="code" href="classvoro_1_1voro__base.html#afd53f018c9641c8b8066e9429c88a4e0">boxz</a>*(ck-<a class="code" href="classvoro_1_1container__periodic__base.html#a9920ab99f51190399ceda8fb8689364f">ez</a>);</div>
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<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00157"></a><span class="lineno"> 157</span> <span class="comment"> /** Calculates the index of block in the container structure</span></div>
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<div class="line"><a name="l00158"></a><span class="lineno"> 158</span> <span class="comment"> * corresponding to given coordinates.</span></div>
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<div class="line"><a name="l00159"></a><span class="lineno"> 159</span> <span class="comment"> * \param[in] (ci,cj,ck) the coordinates of the original block</span></div>
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<div class="line"><a name="l00160"></a><span class="lineno"> 160</span> <span class="comment"> * in the current computation, relative</span></div>
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<div class="line"><a name="l00161"></a><span class="lineno"> 161</span> <span class="comment"> * to the container coordinate system.</span></div>
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<div class="line"><a name="l00162"></a><span class="lineno"> 162</span> <span class="comment"> * \param[in] (ei,ej,ek) the displacement of the current block</span></div>
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<div class="line"><a name="l00163"></a><span class="lineno"> 163</span> <span class="comment"> * from the original block.</span></div>
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<div class="line"><a name="l00164"></a><span class="lineno"> 164</span> <span class="comment"> * \param[in,out] (qx,qy,qz) the periodic displacement that</span></div>
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<div class="line"><a name="l00165"></a><span class="lineno"> 165</span> <span class="comment"> * must be added to the particles</span></div>
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<div class="line"><a name="l00166"></a><span class="lineno"> 166</span> <span class="comment"> * within the computed block.</span></div>
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<div class="line"><a name="l00167"></a><span class="lineno"> 167</span> <span class="comment"> * \param[in] disp a block displacement used internally by the</span></div>
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<div class="line"><a name="l00168"></a><span class="lineno"> 168</span> <span class="comment"> * find_voronoi_cell and compute_cell routines</span></div>
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<div class="line"><a name="l00169"></a><span class="lineno"> 169</span> <span class="comment"> * (but not needed in this instance.)</span></div>
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<div class="line"><a name="l00170"></a><span class="lineno"> 170</span> <span class="comment"> * \return The block index. */</span></div>
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<div class="line"><a name="l00171"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#aa0cd2a5bf51968b7af3334f4bbb8df8e"> 171</a></span>  <span class="keyword">inline</span> <span class="keywordtype">int</span> <a class="code" href="classvoro_1_1container__periodic__base.html#aa0cd2a5bf51968b7af3334f4bbb8df8e">region_index</a>(<span class="keywordtype">int</span> ci,<span class="keywordtype">int</span> cj,<span class="keywordtype">int</span> ck,<span class="keywordtype">int</span> ei,<span class="keywordtype">int</span> ej,<span class="keywordtype">int</span> ek,<span class="keywordtype">double</span> &qx,<span class="keywordtype">double</span> &qy,<span class="keywordtype">double</span> &qz,<span class="keywordtype">int</span> &disp) {</div>
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<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  <span class="keywordtype">int</span> qi=ci+(ei-<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>),qj=cj+(ej-<a class="code" href="classvoro_1_1container__periodic__base.html#a407b759a2c2d6baec5183e18a726a4e6">ey</a>),qk=ck+(ek-<a class="code" href="classvoro_1_1container__periodic__base.html#a9920ab99f51190399ceda8fb8689364f">ez</a>);</div>
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<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <span class="keywordtype">int</span> iv(<a class="code" href="classvoro_1_1voro__base.html#a59a281a5e25e13f681c4f6a2c8bd1ca7">step_div</a>(qi,<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>));<span class="keywordflow">if</span>(iv!=0) {qx=iv*<a class="code" href="classvoro_1_1unitcell.html#aba3ac9d30b539fb0017799555199c2df">bx</a>;qi-=<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>*iv;} <span class="keywordflow">else</span> qx=0;</div>
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<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  <a class="code" href="classvoro_1_1container__periodic__base.html#a11b7428673e4791fe651036ecda0cd12">create_periodic_image</a>(qi,qj,qk);</div>
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<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  <span class="keywordflow">return</span> qi+<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>*(qj+<a class="code" href="classvoro_1_1container__periodic__base.html#aa143ce1ecd9093f7c1889a0481b4cbb5">oy</a>*qk);</div>
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<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  }</div>
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<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a9e622a40386d97fcb015ff4ed792ff44">create_all_images</a>();</div>
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<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a133f1be4a780183fd6bd7c008c65482d">check_compartmentalized</a>();</div>
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<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  <span class="keyword">protected</span>:</div>
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<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#add72546a646600a12ccda1be8041213a">add_particle_memory</a>(<span class="keywordtype">int</span> i);</div>
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<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#afcffffda4a00a48acb4243a74ed59c05">put_locate_block</a>(<span class="keywordtype">int</span> &ijk,<span class="keywordtype">double</span> &x,<span class="keywordtype">double</span> &y,<span class="keywordtype">double</span> &z);</div>
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<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#afcffffda4a00a48acb4243a74ed59c05">put_locate_block</a>(<span class="keywordtype">int</span> &ijk,<span class="keywordtype">double</span> &x,<span class="keywordtype">double</span> &y,<span class="keywordtype">double</span> &z,<span class="keywordtype">int</span> &ai,<span class="keywordtype">int</span> &aj,<span class="keywordtype">int</span> &ak);<span class="comment"></span></div>
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<div class="line"><a name="l00183"></a><span class="lineno"> 183</span> <span class="comment"> /** Creates particles within an image block by copying them</span></div>
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<div class="line"><a name="l00184"></a><span class="lineno"> 184</span> <span class="comment"> * from the primary domain and shifting them. If the given</span></div>
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<div class="line"><a name="l00185"></a><span class="lineno"> 185</span> <span class="comment"> * block is aligned with the primary domain in the z-direction,</span></div>
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<div class="line"><a name="l00186"></a><span class="lineno"> 186</span> <span class="comment"> * the routine calls the simpler create_side_image routine</span></div>
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<div class="line"><a name="l00187"></a><span class="lineno"> 187</span> <span class="comment"> * where the image block may comprise of particles from up to</span></div>
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<div class="line"><a name="l00188"></a><span class="lineno"> 188</span> <span class="comment"> * two primary blocks. Otherwise is calls the more complex</span></div>
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<div class="line"><a name="l00189"></a><span class="lineno"> 189</span> <span class="comment"> * create_vertical_image where the image block may comprise of</span></div>
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<div class="line"><a name="l00190"></a><span class="lineno"> 190</span> <span class="comment"> * particles from up to four primary blocks.</span></div>
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<div class="line"><a name="l00191"></a><span class="lineno"> 191</span> <span class="comment"> * \param[in] (di,dj,dk) the coordinates of the image block to</span></div>
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<div class="line"><a name="l00192"></a><span class="lineno"> 192</span> <span class="comment"> * create. */</span></div>
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<div class="line"><a name="l00193"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__base.html#a11b7428673e4791fe651036ecda0cd12"> 193</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a11b7428673e4791fe651036ecda0cd12">create_periodic_image</a>(<span class="keywordtype">int</span> di,<span class="keywordtype">int</span> dj,<span class="keywordtype">int</span> dk) {</div>
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<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  <span class="keywordflow">if</span>(di<0||di>=<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>||dj<0||dj>=<a class="code" href="classvoro_1_1container__periodic__base.html#aa143ce1ecd9093f7c1889a0481b4cbb5">oy</a>||dk<0||dk>=<a class="code" href="classvoro_1_1container__periodic__base.html#ab1f18c51495f684dfc4d3372f9b311da">oz</a>)</div>
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<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  voro_fatal_error(<span class="stringliteral">"Constructing periodic image for nonexistent point"</span>,<a class="code" href="config_8hh.html#ad8e0de9d48da06e86dd87884e4a2d47e">VOROPP_INTERNAL_ERROR</a>);</div>
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<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  <span class="keywordflow">if</span>(dk>=<a class="code" href="classvoro_1_1container__periodic__base.html#a9920ab99f51190399ceda8fb8689364f">ez</a>&&dk<<a class="code" href="classvoro_1_1container__periodic__base.html#afe16d21568925f78421122cdfb7b0cc0">wz</a>) {</div>
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<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  <span class="keywordflow">if</span>(dj<ey||dj>=<a class="code" href="classvoro_1_1container__periodic__base.html#a012ffc20dd6379bcbd26ddc0c5cc8591">wy</a>) <a class="code" href="classvoro_1_1container__periodic__base.html#aa16ea029bbf80a1fdec3e6bba675e704">create_side_image</a>(di,dj,dk);</div>
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<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  } <span class="keywordflow">else</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a8d3545b219d91aee864b224829b6a644">create_vertical_image</a>(di,dj,dk);</div>
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<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  }</div>
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<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#aa16ea029bbf80a1fdec3e6bba675e704">create_side_image</a>(<span class="keywordtype">int</span> di,<span class="keywordtype">int</span> dj,<span class="keywordtype">int</span> dk);</div>
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<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a8d3545b219d91aee864b224829b6a644">create_vertical_image</a>(<span class="keywordtype">int</span> di,<span class="keywordtype">int</span> dj,<span class="keywordtype">int</span> dk);</div>
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<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#a72efe37cb7876149cac5f5ead579b353">put_image</a>(<span class="keywordtype">int</span> reg,<span class="keywordtype">int</span> fijk,<span class="keywordtype">int</span> l,<span class="keywordtype">double</span> dx,<span class="keywordtype">double</span> dy,<span class="keywordtype">double</span> dz);</div>
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<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__base.html#ac5b0b78cf8fe46f7e3c7124dbf4e0729">remap</a>(<span class="keywordtype">int</span> &ai,<span class="keywordtype">int</span> &aj,<span class="keywordtype">int</span> &ak,<span class="keywordtype">int</span> &ci,<span class="keywordtype">int</span> &cj,<span class="keywordtype">int</span> &ck,<span class="keywordtype">double</span> &x,<span class="keywordtype">double</span> &y,<span class="keywordtype">double</span> &z,<span class="keywordtype">int</span> &ijk);</div>
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<div class="line"><a name="l00204"></a><span class="lineno"> 204</span> };</div>
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<div class="line"><a name="l00205"></a><span class="lineno"> 205</span> <span class="comment"></span></div>
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<div class="line"><a name="l00206"></a><span class="lineno"> 206</span> <span class="comment">/** \brief Extension of the container_periodic_base class for computing regular</span></div>
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<div class="line"><a name="l00207"></a><span class="lineno"> 207</span> <span class="comment"> * Voronoi tessellations.</span></div>
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<div class="line"><a name="l00208"></a><span class="lineno"> 208</span> <span class="comment"> *</span></div>
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<div class="line"><a name="l00209"></a><span class="lineno"> 209</span> <span class="comment"> * This class is an extension of the container_periodic_base that has routines</span></div>
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<div class="line"><a name="l00210"></a><span class="lineno"> 210</span> <span class="comment"> * specifically for computing the regular Voronoi tessellation with no</span></div>
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<div class="line"><a name="l00211"></a><span class="lineno"> 211</span> <span class="comment"> * dependence on particle radii. */</span></div>
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<div class="line"><a name="l00212"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html"> 212</a></span> <span class="keyword">class </span><a class="code" href="classvoro_1_1container__periodic.html">container_periodic</a> : <span class="keyword">public</span> <a class="code" href="classvoro_1_1container__periodic__base.html">container_periodic_base</a>, <span class="keyword">public</span> <a class="code" href="classvoro_1_1radius__mono.html">radius_mono</a> {</div>
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<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  <span class="keyword">public</span>:</div>
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<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  <a class="code" href="classvoro_1_1container__periodic.html#ace68f8fc6073edb7dd41c30761f899fd">container_periodic</a>(<span class="keywordtype">double</span> bx_,<span class="keywordtype">double</span> bxy_,<span class="keywordtype">double</span> by_,<span class="keywordtype">double</span> bxz_,<span class="keywordtype">double</span> byz_,<span class="keywordtype">double</span> bz_,</div>
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<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  <span class="keywordtype">int</span> nx_,<span class="keywordtype">int</span> ny_,<span class="keywordtype">int</span> nz_,<span class="keywordtype">int</span> init_mem_);</div>
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<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#a5394f52caa441d83c5aba6cf0e254116">clear</a>();</div>
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<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#afa9abf680a0dc08650ada11a2eff0be6">put</a>(<span class="keywordtype">int</span> n,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z);</div>
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<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#afa9abf680a0dc08650ada11a2eff0be6">put</a>(<span class="keywordtype">int</span> n,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">int</span> &ai,<span class="keywordtype">int</span> &aj,<span class="keywordtype">int</span> &ak);</div>
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<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#afa9abf680a0dc08650ada11a2eff0be6">put</a>(<a class="code" href="classvoro_1_1particle__order.html">particle_order</a> &vo,<span class="keywordtype">int</span> n,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z);</div>
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<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  <span class="keywordtype">void</span> <span class="keyword">import</span>(FILE *fp=stdin);</div>
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<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  <span class="keywordtype">void</span> <span class="keyword">import</span>(<a class="code" href="classvoro_1_1particle__order.html">particle_order</a> &vo,FILE *fp=stdin);<span class="comment"></span></div>
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<div class="line"><a name="l00222"></a><span class="lineno"> 222</span> <span class="comment"> /** Imports a list of particles from an open file stream into</span></div>
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<div class="line"><a name="l00223"></a><span class="lineno"> 223</span> <span class="comment"> * the container. Entries of four numbers (Particle ID, x</span></div>
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<div class="line"><a name="l00224"></a><span class="lineno"> 224</span> <span class="comment"> * position, y position, z position) are searched for. If the</span></div>
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<div class="line"><a name="l00225"></a><span class="lineno"> 225</span> <span class="comment"> * file cannot be successfully read, then the routine causes a</span></div>
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<div class="line"><a name="l00226"></a><span class="lineno"> 226</span> <span class="comment"> * fatal error.</span></div>
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<div class="line"><a name="l00227"></a><span class="lineno"> 227</span> <span class="comment"> * \param[in] filename the name of the file to open and read</span></div>
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<div class="line"><a name="l00228"></a><span class="lineno"> 228</span> <span class="comment"> * from. */</span></div>
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<div class="line"><a name="l00229"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#ac2b38542ffabd95cb7f5bc5dab162a5d"> 229</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <span class="keyword">import</span>(<span class="keyword">const</span> <span class="keywordtype">char</span>* filename) {</div>
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<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"r"</span>);</div>
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<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  <span class="keyword">import</span>(fp);</div>
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<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  fclose(fp);</div>
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<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00234"></a><span class="lineno"> 234</span> <span class="comment"> /** Imports a list of particles from an open file stream into</span></div>
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<div class="line"><a name="l00235"></a><span class="lineno"> 235</span> <span class="comment"> * the container. Entries of four numbers (Particle ID, x</span></div>
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|
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span> <span class="comment"> * position, y position, z position) are searched for. In</span></div>
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<div class="line"><a name="l00237"></a><span class="lineno"> 237</span> <span class="comment"> * addition, the order in which particles are read is saved</span></div>
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<div class="line"><a name="l00238"></a><span class="lineno"> 238</span> <span class="comment"> * into an ordering class. If the file cannot be successfully</span></div>
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<div class="line"><a name="l00239"></a><span class="lineno"> 239</span> <span class="comment"> * read, then the routine causes a fatal error.</span></div>
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|
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span> <span class="comment"> * \param[in,out] vo the ordering class to use.</span></div>
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<div class="line"><a name="l00241"></a><span class="lineno"> 241</span> <span class="comment"> * \param[in] filename the name of the file to open and read</span></div>
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<div class="line"><a name="l00242"></a><span class="lineno"> 242</span> <span class="comment"> * from. */</span></div>
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<div class="line"><a name="l00243"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#ae586c7cf716fa84e91e9f801f5ac8a50"> 243</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <span class="keyword">import</span>(<a class="code" href="classvoro_1_1particle__order.html">particle_order</a> &vo,<span class="keyword">const</span> <span class="keywordtype">char</span>* filename) {</div>
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<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"r"</span>);</div>
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<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  <span class="keyword">import</span>(vo,fp);</div>
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<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  fclose(fp);</div>
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<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  }</div>
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<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#a0b374a8ad39646bf22468e535b08a187">compute_all_cells</a>();</div>
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<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  <span class="keywordtype">double</span> <a class="code" href="classvoro_1_1container__periodic.html#a0f60071a597dec1065a5ab122cf72415">sum_cell_volumes</a>();<span class="comment"></span></div>
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<div class="line"><a name="l00250"></a><span class="lineno"> 250</span> <span class="comment"> /** Dumps particle IDs and positions to a file.</span></div>
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<div class="line"><a name="l00251"></a><span class="lineno"> 251</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
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<div class="line"><a name="l00252"></a><span class="lineno"> 252</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
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<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
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<div class="line"><a name="l00254"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#a4b22d1868b96f049891a4f65e57497e8"> 254</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#a4b22d1868b96f049891a4f65e57497e8">draw_particles</a>(c_loop &vl,FILE *fp) {</div>
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<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  <span class="keywordtype">double</span> *pp;</div>
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<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> {</div>
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<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[vl.ijk]+3*vl.q;</div>
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<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  fprintf(fp,<span class="stringliteral">"%d %g %g %g\n"</span>,<span class="keywordtype">id</span>[vl.ijk][vl.q],*pp,pp[1],pp[2]);</div>
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<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
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<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00261"></a><span class="lineno"> 261</span> <span class="comment"> /** Dumps all of the particle IDs and positions to a file.</span></div>
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<div class="line"><a name="l00262"></a><span class="lineno"> 262</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
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<div class="line"><a name="l00263"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#a21a12c0ed7e67de10360cd3af8a5928f"> 263</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#a21a12c0ed7e67de10360cd3af8a5928f">draw_particles</a>(FILE *fp=stdout) {</div>
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<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  <a class="code" href="classvoro_1_1c__loop__all__periodic.html">c_loop_all_periodic</a> vl(*<span class="keyword">this</span>);</div>
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<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  <a class="code" href="classvoro_1_1container__periodic.html#a4b22d1868b96f049891a4f65e57497e8">draw_particles</a>(vl,fp);</div>
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<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00267"></a><span class="lineno"> 267</span> <span class="comment"> /** Dumps all of the particle IDs and positions to a file.</span></div>
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<div class="line"><a name="l00268"></a><span class="lineno"> 268</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
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<div class="line"><a name="l00269"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#a0b7b5b922f383d0c8d05e499a887a3b9"> 269</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#a0b7b5b922f383d0c8d05e499a887a3b9">draw_particles</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
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<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
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<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  <a class="code" href="classvoro_1_1container__periodic.html#a4b22d1868b96f049891a4f65e57497e8">draw_particles</a>(fp);</div>
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<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  fclose(fp);</div>
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<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00274"></a><span class="lineno"> 274</span> <span class="comment"> /** Dumps particle positions in POV-Ray format.</span></div>
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<div class="line"><a name="l00275"></a><span class="lineno"> 275</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
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<div class="line"><a name="l00276"></a><span class="lineno"> 276</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
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<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
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<div class="line"><a name="l00278"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#a7086ad4c901827134b29a1bfc1b0bd3d"> 278</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#a7086ad4c901827134b29a1bfc1b0bd3d">draw_particles_pov</a>(c_loop &vl,FILE *fp) {</div>
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<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  <span class="keywordtype">double</span> *pp;</div>
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<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> {</div>
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<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[vl.ijk]+3*vl.q;</div>
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<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  fprintf(fp,<span class="stringliteral">"// id %d\nsphere{<%g,%g,%g>,s}\n"</span>,</div>
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<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  <span class="keywordtype">id</span>[vl.ijk][vl.q],*pp,pp[1],pp[2]);</div>
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<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
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<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00286"></a><span class="lineno"> 286</span> <span class="comment"> /** Dumps all particle positions in POV-Ray format.</span></div>
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<div class="line"><a name="l00287"></a><span class="lineno"> 287</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
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<div class="line"><a name="l00288"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#a7279993d74b79966cfaeab40f8df5882"> 288</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#a7279993d74b79966cfaeab40f8df5882">draw_particles_pov</a>(FILE *fp=stdout) {</div>
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<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  <a class="code" href="classvoro_1_1c__loop__all__periodic.html">c_loop_all_periodic</a> vl(*<span class="keyword">this</span>);</div>
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<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  <a class="code" href="classvoro_1_1container__periodic.html#a7086ad4c901827134b29a1bfc1b0bd3d">draw_particles_pov</a>(vl,fp);</div>
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<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00292"></a><span class="lineno"> 292</span> <span class="comment"> /** Dumps all particle positions in POV-Ray format.</span></div>
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<div class="line"><a name="l00293"></a><span class="lineno"> 293</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
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<div class="line"><a name="l00294"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#af008d47998b895aeeb108361a642407d"> 294</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#af008d47998b895aeeb108361a642407d">draw_particles_pov</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
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<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
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<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  <a class="code" href="classvoro_1_1container__periodic.html#a7086ad4c901827134b29a1bfc1b0bd3d">draw_particles_pov</a>(fp);</div>
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<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  fclose(fp);</div>
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<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00299"></a><span class="lineno"> 299</span> <span class="comment"> /** Computes Voronoi cells and saves the output in gnuplot</span></div>
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<div class="line"><a name="l00300"></a><span class="lineno"> 300</span> <span class="comment"> * format.</span></div>
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<div class="line"><a name="l00301"></a><span class="lineno"> 301</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
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<div class="line"><a name="l00302"></a><span class="lineno"> 302</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
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<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
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<div class="line"><a name="l00304"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#ad90cf825d916a83570382f7cfae0461b"> 304</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#ad90cf825d916a83570382f7cfae0461b">draw_cells_gnuplot</a>(c_loop &vl,FILE *fp) {</div>
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<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  <a class="code" href="classvoro_1_1voronoicell.html">voronoicell</a> c;<span class="keywordtype">double</span> *pp;</div>
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<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__periodic.html#af5cc004a3be4a1eecb037fe9f4b9e2ff">compute_cell</a>(c,vl)) {</div>
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<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[vl.ijk]+<a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>*vl.q;</div>
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<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a1c0657c1d89313089bbd437170c97d46">draw_gnuplot</a>(*pp,pp[1],pp[2],fp);</div>
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<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
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<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00311"></a><span class="lineno"> 311</span> <span class="comment"> /** Computes all Voronoi cells and saves the output in gnuplot</span></div>
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<div class="line"><a name="l00312"></a><span class="lineno"> 312</span> <span class="comment"> * format.</span></div>
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<div class="line"><a name="l00313"></a><span class="lineno"> 313</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
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<div class="line"><a name="l00314"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#adaf8256dd86c8c37618113cee774345f"> 314</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#adaf8256dd86c8c37618113cee774345f">draw_cells_gnuplot</a>(FILE *fp=stdout) {</div>
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<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  <a class="code" href="classvoro_1_1c__loop__all__periodic.html">c_loop_all_periodic</a> vl(*<span class="keyword">this</span>);</div>
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<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <a class="code" href="classvoro_1_1container__periodic.html#ad90cf825d916a83570382f7cfae0461b">draw_cells_gnuplot</a>(vl,fp);</div>
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<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00318"></a><span class="lineno"> 318</span> <span class="comment"> /** Compute all Voronoi cells and saves the output in gnuplot</span></div>
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<div class="line"><a name="l00319"></a><span class="lineno"> 319</span> <span class="comment"> * format.</span></div>
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<div class="line"><a name="l00320"></a><span class="lineno"> 320</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
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<div class="line"><a name="l00321"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#a4f2b088d20b479b62a3dcdfa42d62526"> 321</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#a4f2b088d20b479b62a3dcdfa42d62526">draw_cells_gnuplot</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
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<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
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<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  <a class="code" href="classvoro_1_1container__periodic.html#ad90cf825d916a83570382f7cfae0461b">draw_cells_gnuplot</a>(fp);</div>
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<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  fclose(fp);</div>
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<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00326"></a><span class="lineno"> 326</span> <span class="comment"> /** Computes Voronoi cells and saves the output in POV-Ray</span></div>
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<div class="line"><a name="l00327"></a><span class="lineno"> 327</span> <span class="comment"> * format.</span></div>
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<div class="line"><a name="l00328"></a><span class="lineno"> 328</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
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<div class="line"><a name="l00329"></a><span class="lineno"> 329</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
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<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
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<div class="line"><a name="l00331"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#adba11c6b4f9a20b1d5e0e16b94fe7dff"> 331</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#adba11c6b4f9a20b1d5e0e16b94fe7dff">draw_cells_pov</a>(c_loop &vl,FILE *fp) {</div>
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<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  <a class="code" href="classvoro_1_1voronoicell.html">voronoicell</a> c;<span class="keywordtype">double</span> *pp;</div>
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<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__periodic.html#af5cc004a3be4a1eecb037fe9f4b9e2ff">compute_cell</a>(c,vl)) {</div>
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<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  fprintf(fp,<span class="stringliteral">"// cell %d\n"</span>,<span class="keywordtype">id</span>[vl.ijk][vl.q]);</div>
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<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[vl.ijk]+<a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>*vl.q;</div>
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<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a923ffa62bd5d62070cd29e01f3a1327a">draw_pov</a>(*pp,pp[1],pp[2],fp);</div>
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<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
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<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00339"></a><span class="lineno"> 339</span> <span class="comment"> /** Computes all Voronoi cells and saves the output in POV-Ray</span></div>
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<div class="line"><a name="l00340"></a><span class="lineno"> 340</span> <span class="comment"> * format.</span></div>
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<div class="line"><a name="l00341"></a><span class="lineno"> 341</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
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<div class="line"><a name="l00342"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#ae35a7e24438d3290c5dbb39f2474f3f4"> 342</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#ae35a7e24438d3290c5dbb39f2474f3f4">draw_cells_pov</a>(FILE *fp=stdout) {</div>
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<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  <a class="code" href="classvoro_1_1c__loop__all__periodic.html">c_loop_all_periodic</a> vl(*<span class="keyword">this</span>);</div>
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<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  <a class="code" href="classvoro_1_1container__periodic.html#adba11c6b4f9a20b1d5e0e16b94fe7dff">draw_cells_pov</a>(vl,fp);</div>
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<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00346"></a><span class="lineno"> 346</span> <span class="comment"> /** Computes all Voronoi cells and saves the output in POV-Ray</span></div>
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<div class="line"><a name="l00347"></a><span class="lineno"> 347</span> <span class="comment"> * format.</span></div>
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<div class="line"><a name="l00348"></a><span class="lineno"> 348</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
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<div class="line"><a name="l00349"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#a690edc7e6e23393d82faf320aac1b2d9"> 349</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#a690edc7e6e23393d82faf320aac1b2d9">draw_cells_pov</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
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<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
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<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  <a class="code" href="classvoro_1_1container__periodic.html#adba11c6b4f9a20b1d5e0e16b94fe7dff">draw_cells_pov</a>(fp);</div>
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<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  fclose(fp);</div>
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<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00354"></a><span class="lineno"> 354</span> <span class="comment"> /** Computes the Voronoi cells and saves customized information</span></div>
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<div class="line"><a name="l00355"></a><span class="lineno"> 355</span> <span class="comment"> * about them.</span></div>
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<div class="line"><a name="l00356"></a><span class="lineno"> 356</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
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<div class="line"><a name="l00357"></a><span class="lineno"> 357</span> <span class="comment"> * \param[in] format the custom output string to use.</span></div>
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<div class="line"><a name="l00358"></a><span class="lineno"> 358</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
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<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
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<div class="line"><a name="l00360"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#adeb50c6841166e59a6be150d7adb4212"> 360</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#adeb50c6841166e59a6be150d7adb4212">print_custom</a>(c_loop &vl,<span class="keyword">const</span> <span class="keywordtype">char</span> *format,FILE *fp) {</div>
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<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  <span class="keywordtype">int</span> ijk,q;<span class="keywordtype">double</span> *pp;</div>
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<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1voro__base.html#a95d9ee6c1610afccf265198ae63b5e88">contains_neighbor</a>(format)) {</div>
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<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  <a class="code" href="classvoro_1_1voronoicell__neighbor.html">voronoicell_neighbor</a> c;</div>
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<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__periodic.html#af5cc004a3be4a1eecb037fe9f4b9e2ff">compute_cell</a>(c,vl)) {</div>
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<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  ijk=vl.ijk;q=vl.q;pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[ijk]+<a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>*q;</div>
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<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a095c6bfc1b9b7a087d0b35b443e5c023">output_custom</a>(format,<span class="keywordtype">id</span>[ijk][q],*pp,pp[1],pp[2],default_radius,fp);</div>
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<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
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<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  } <span class="keywordflow">else</span> {</div>
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<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  <a class="code" href="classvoro_1_1voronoicell.html">voronoicell</a> c;</div>
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<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__periodic.html#af5cc004a3be4a1eecb037fe9f4b9e2ff">compute_cell</a>(c,vl)) {</div>
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<div class="line"><a name="l00371"></a><span class="lineno"> 371</span>  ijk=vl.ijk;q=vl.q;pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[ijk]+<a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>*q;</div>
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<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a095c6bfc1b9b7a087d0b35b443e5c023">output_custom</a>(format,<span class="keywordtype">id</span>[ijk][q],*pp,pp[1],pp[2],default_radius,fp);</div>
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<div class="line"><a name="l00373"></a><span class="lineno"> 373</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
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<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  }</div>
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<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  }</div>
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<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#adeb50c6841166e59a6be150d7adb4212">print_custom</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *format,FILE *fp=stdout);</div>
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<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic.html#adeb50c6841166e59a6be150d7adb4212">print_custom</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *format,<span class="keyword">const</span> <span class="keywordtype">char</span> *filename);</div>
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<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__periodic.html#a5fa97cb936062142acc29e5870add6c6">find_voronoi_cell</a>(<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">double</span> &rx,<span class="keywordtype">double</span> &ry,<span class="keywordtype">double</span> &rz,<span class="keywordtype">int</span> &pid);<span class="comment"></span></div>
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<div class="line"><a name="l00379"></a><span class="lineno"> 379</span> <span class="comment"> /** Computes the Voronoi cell for a particle currently being</span></div>
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<div class="line"><a name="l00380"></a><span class="lineno"> 380</span> <span class="comment"> * referenced by a loop class.</span></div>
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<div class="line"><a name="l00381"></a><span class="lineno"> 381</span> <span class="comment"> * \param[out] c a Voronoi cell class in which to store the</span></div>
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<div class="line"><a name="l00382"></a><span class="lineno"> 382</span> <span class="comment"> * computed cell.</span></div>
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<div class="line"><a name="l00383"></a><span class="lineno"> 383</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
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<div class="line"><a name="l00384"></a><span class="lineno"> 384</span> <span class="comment"> * \return True if the cell was computed. If the cell cannot be</span></div>
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<div class="line"><a name="l00385"></a><span class="lineno"> 385</span> <span class="comment"> * computed because it was removed entirely for some reason,</span></div>
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<div class="line"><a name="l00386"></a><span class="lineno"> 386</span> <span class="comment"> * then the routine returns false. */</span></div>
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<div class="line"><a name="l00387"></a><span class="lineno"> 387</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell,<span class="keyword">class</span> c_loop></div>
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<div class="line"><a name="l00388"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#af5cc004a3be4a1eecb037fe9f4b9e2ff"> 388</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__periodic.html#af5cc004a3be4a1eecb037fe9f4b9e2ff">compute_cell</a>(v_cell &c,c_loop &vl) {</div>
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<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  <span class="keywordflow">return</span> vc.compute_cell(c,vl.ijk,vl.q,vl.i,vl.j,vl.k);</div>
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<div class="line"><a name="l00390"></a><span class="lineno"> 390</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00391"></a><span class="lineno"> 391</span> <span class="comment"> /** Computes the Voronoi cell for given particle.</span></div>
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<div class="line"><a name="l00392"></a><span class="lineno"> 392</span> <span class="comment"> * \param[out] c a Voronoi cell class in which to store the</span></div>
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<div class="line"><a name="l00393"></a><span class="lineno"> 393</span> <span class="comment"> * computed cell.</span></div>
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<div class="line"><a name="l00394"></a><span class="lineno"> 394</span> <span class="comment"> * \param[in] ijk the block that the particle is within.</span></div>
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<div class="line"><a name="l00395"></a><span class="lineno"> 395</span> <span class="comment"> * \param[in] q the index of the particle within the block.</span></div>
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<div class="line"><a name="l00396"></a><span class="lineno"> 396</span> <span class="comment"> * \return True if the cell was computed. If the cell cannot be</span></div>
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<div class="line"><a name="l00397"></a><span class="lineno"> 397</span> <span class="comment"> * computed because it was removed entirely for some reason,</span></div>
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<div class="line"><a name="l00398"></a><span class="lineno"> 398</span> <span class="comment"> * then the routine returns false. */</span></div>
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<div class="line"><a name="l00399"></a><span class="lineno"> 399</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell></div>
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<div class="line"><a name="l00400"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#a5ed9e19316148b6af242887ccc8ccf60"> 400</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__periodic.html#a5ed9e19316148b6af242887ccc8ccf60">compute_cell</a>(v_cell &c,<span class="keywordtype">int</span> ijk,<span class="keywordtype">int</span> q) {</div>
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<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  <span class="keywordtype">int</span> k(ijk/(<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>*<a class="code" href="classvoro_1_1container__periodic__base.html#aa143ce1ecd9093f7c1889a0481b4cbb5">oy</a>)),ijkt(ijk-(<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>*oy)*k),j(ijkt/<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>),i(ijkt-j*<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>);</div>
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<div class="line"><a name="l00402"></a><span class="lineno"> 402</span>  <span class="keywordflow">return</span> vc.compute_cell(c,ijk,q,i,j,k);</div>
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<div class="line"><a name="l00403"></a><span class="lineno"> 403</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00404"></a><span class="lineno"> 404</span> <span class="comment"> /** Computes the Voronoi cell for a ghost particle at a given</span></div>
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<div class="line"><a name="l00405"></a><span class="lineno"> 405</span> <span class="comment"> * location.</span></div>
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<div class="line"><a name="l00406"></a><span class="lineno"> 406</span> <span class="comment"> * \param[out] c a Voronoi cell class in which to store the</span></div>
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<div class="line"><a name="l00407"></a><span class="lineno"> 407</span> <span class="comment"> * computed cell.</span></div>
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<div class="line"><a name="l00408"></a><span class="lineno"> 408</span> <span class="comment"> * \param[in] (x,y,z) the location of the ghost particle.</span></div>
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<div class="line"><a name="l00409"></a><span class="lineno"> 409</span> <span class="comment"> * \return True if the cell was computed. If the cell cannot be</span></div>
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<div class="line"><a name="l00410"></a><span class="lineno"> 410</span> <span class="comment"> * computed, if it is removed entirely by a wall or boundary</span></div>
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<div class="line"><a name="l00411"></a><span class="lineno"> 411</span> <span class="comment"> * condition, then the routine returns false. */</span></div>
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<div class="line"><a name="l00412"></a><span class="lineno"> 412</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell></div>
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<div class="line"><a name="l00413"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic.html#ac5c58cd20c15b64b4fa6737b9a4bf8f9"> 413</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__periodic.html#ac5c58cd20c15b64b4fa6737b9a4bf8f9">compute_ghost_cell</a>(v_cell &c,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z) {</div>
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<div class="line"><a name="l00414"></a><span class="lineno"> 414</span>  <span class="keywordtype">int</span> ijk;</div>
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<div class="line"><a name="l00415"></a><span class="lineno"> 415</span>  <a class="code" href="classvoro_1_1container__periodic__base.html#afcffffda4a00a48acb4243a74ed59c05">put_locate_block</a>(ijk,x,y,z);</div>
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<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  <span class="keywordtype">double</span> *pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[ijk]+3*<a class="code" href="classvoro_1_1container__periodic__base.html#a8ae965b9dbb02a92e8dcb0d082d625a2">co</a>[ijk]++;</div>
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<div class="line"><a name="l00417"></a><span class="lineno"> 417</span>  *(pp++)=x;*(pp++)=y;*(pp++)=z;</div>
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<div class="line"><a name="l00418"></a><span class="lineno"> 418</span>  <span class="keywordtype">bool</span> q=<a class="code" href="classvoro_1_1container__periodic.html#af5cc004a3be4a1eecb037fe9f4b9e2ff">compute_cell</a>(c,ijk,co[ijk]-1);</div>
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<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  co[ijk]--;</div>
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<div class="line"><a name="l00420"></a><span class="lineno"> 420</span>  <span class="keywordflow">return</span> q;</div>
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<div class="line"><a name="l00421"></a><span class="lineno"> 421</span>  } </div>
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<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  <span class="keyword">private</span>:</div>
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<div class="line"><a name="l00423"></a><span class="lineno"> 423</span>  <a class="code" href="classvoro_1_1voro__compute.html">voro_compute<container_periodic></a> vc;</div>
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<div class="line"><a name="l00424"></a><span class="lineno"> 424</span>  <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="classvoro_1_1voro__compute.html">voro_compute</a><<a class="code" href="classvoro_1_1container__periodic.html">container_periodic</a>>;</div>
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<div class="line"><a name="l00425"></a><span class="lineno"> 425</span> };</div>
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<div class="line"><a name="l00426"></a><span class="lineno"> 426</span> <span class="comment"></span></div>
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<div class="line"><a name="l00427"></a><span class="lineno"> 427</span> <span class="comment">/** \brief Extension of the container_periodic_base class for computing radical</span></div>
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<div class="line"><a name="l00428"></a><span class="lineno"> 428</span> <span class="comment"> * Voronoi tessellations.</span></div>
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<div class="line"><a name="l00429"></a><span class="lineno"> 429</span> <span class="comment"> *</span></div>
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<div class="line"><a name="l00430"></a><span class="lineno"> 430</span> <span class="comment"> * This class is an extension of container_periodic_base that has routines</span></div>
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<div class="line"><a name="l00431"></a><span class="lineno"> 431</span> <span class="comment"> * specifically for computing the radical Voronoi tessellation that depends</span></div>
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<div class="line"><a name="l00432"></a><span class="lineno"> 432</span> <span class="comment"> * on the particle radii. */</span></div>
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<div class="line"><a name="l00433"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html"> 433</a></span> <span class="keyword">class </span><a class="code" href="classvoro_1_1container__periodic__poly.html">container_periodic_poly</a> : <span class="keyword">public</span> <a class="code" href="classvoro_1_1container__periodic__base.html">container_periodic_base</a>, <span class="keyword">public</span> <a class="code" href="classvoro_1_1radius__poly.html">radius_poly</a> {</div>
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<div class="line"><a name="l00434"></a><span class="lineno"> 434</span>  <span class="keyword">public</span>:</div>
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<div class="line"><a name="l00435"></a><span class="lineno"> 435</span>  <a class="code" href="classvoro_1_1container__periodic__poly.html#adc3616c10fe7b40795951b5cd8dc8c74">container_periodic_poly</a>(<span class="keywordtype">double</span> bx_,<span class="keywordtype">double</span> bxy_,<span class="keywordtype">double</span> by_,<span class="keywordtype">double</span> bxz_,<span class="keywordtype">double</span> byz_,<span class="keywordtype">double</span> bz_,</div>
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<div class="line"><a name="l00436"></a><span class="lineno"> 436</span>  <span class="keywordtype">int</span> nx_,<span class="keywordtype">int</span> ny_,<span class="keywordtype">int</span> nz_,<span class="keywordtype">int</span> init_mem_);</div>
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<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a4dd33f8d67680a65864245a90ac883a2">clear</a>();</div>
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<div class="line"><a name="l00438"></a><span class="lineno"> 438</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a1cbdd9c92900e08173e1ea3a6e2e6df4">put</a>(<span class="keywordtype">int</span> n,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">double</span> r);</div>
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<div class="line"><a name="l00439"></a><span class="lineno"> 439</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a1cbdd9c92900e08173e1ea3a6e2e6df4">put</a>(<span class="keywordtype">int</span> n,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">double</span> r,<span class="keywordtype">int</span> &ai,<span class="keywordtype">int</span> &aj,<span class="keywordtype">int</span> &ak);</div>
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<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a1cbdd9c92900e08173e1ea3a6e2e6df4">put</a>(<a class="code" href="classvoro_1_1particle__order.html">particle_order</a> &vo,<span class="keywordtype">int</span> n,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">double</span> r);</div>
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<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  <span class="keywordtype">void</span> <span class="keyword">import</span>(FILE *fp=stdin);</div>
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<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  <span class="keywordtype">void</span> <span class="keyword">import</span>(<a class="code" href="classvoro_1_1particle__order.html">particle_order</a> &vo,FILE *fp=stdin);<span class="comment"></span></div>
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<div class="line"><a name="l00443"></a><span class="lineno"> 443</span> <span class="comment"> /** Imports a list of particles from an open file stream into</span></div>
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<div class="line"><a name="l00444"></a><span class="lineno"> 444</span> <span class="comment"> * the container_poly class. Entries of five numbers (Particle</span></div>
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<div class="line"><a name="l00445"></a><span class="lineno"> 445</span> <span class="comment"> * ID, x position, y position, z position, radius) are searched</span></div>
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<div class="line"><a name="l00446"></a><span class="lineno"> 446</span> <span class="comment"> * for. If the file cannot be successfully read, then the</span></div>
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<div class="line"><a name="l00447"></a><span class="lineno"> 447</span> <span class="comment"> * routine causes a fatal error.</span></div>
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<div class="line"><a name="l00448"></a><span class="lineno"> 448</span> <span class="comment"> * \param[in] filename the name of the file to open and read</span></div>
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<div class="line"><a name="l00449"></a><span class="lineno"> 449</span> <span class="comment"> * from. */</span></div>
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<div class="line"><a name="l00450"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#a2052ab1ed4c33c961fbc26a86c66a494"> 450</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <span class="keyword">import</span>(<span class="keyword">const</span> <span class="keywordtype">char</span>* filename) {</div>
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<div class="line"><a name="l00451"></a><span class="lineno"> 451</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"r"</span>);</div>
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<div class="line"><a name="l00452"></a><span class="lineno"> 452</span>  <span class="keyword">import</span>(fp);</div>
|
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<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  fclose(fp);</div>
|
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<div class="line"><a name="l00454"></a><span class="lineno"> 454</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span> <span class="comment"> /** Imports a list of particles from an open file stream into</span></div>
|
|
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span> <span class="comment"> * the container_poly class. Entries of five numbers (Particle</span></div>
|
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<div class="line"><a name="l00457"></a><span class="lineno"> 457</span> <span class="comment"> * ID, x position, y position, z position, radius) are searched</span></div>
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<div class="line"><a name="l00458"></a><span class="lineno"> 458</span> <span class="comment"> * for. In addition, the order in which particles are read is</span></div>
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<div class="line"><a name="l00459"></a><span class="lineno"> 459</span> <span class="comment"> * saved into an ordering class. If the file cannot be</span></div>
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<div class="line"><a name="l00460"></a><span class="lineno"> 460</span> <span class="comment"> * successfully read, then the routine causes a fatal error.</span></div>
|
|
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span> <span class="comment"> * \param[in,out] vo the ordering class to use.</span></div>
|
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<div class="line"><a name="l00462"></a><span class="lineno"> 462</span> <span class="comment"> * \param[in] filename the name of the file to open and read</span></div>
|
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<div class="line"><a name="l00463"></a><span class="lineno"> 463</span> <span class="comment"> * from. */</span></div>
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<div class="line"><a name="l00464"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#a346b67c09850a78e8eb9144029fe3087"> 464</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <span class="keyword">import</span>(<a class="code" href="classvoro_1_1particle__order.html">particle_order</a> &vo,<span class="keyword">const</span> <span class="keywordtype">char</span>* filename) {</div>
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<div class="line"><a name="l00465"></a><span class="lineno"> 465</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"r"</span>);</div>
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<div class="line"><a name="l00466"></a><span class="lineno"> 466</span>  <span class="keyword">import</span>(vo,fp);</div>
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<div class="line"><a name="l00467"></a><span class="lineno"> 467</span>  fclose(fp);</div>
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<div class="line"><a name="l00468"></a><span class="lineno"> 468</span>  }</div>
|
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<div class="line"><a name="l00469"></a><span class="lineno"> 469</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#ab19ca1d361472a1c7dc35023fd20297c">compute_all_cells</a>();</div>
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<div class="line"><a name="l00470"></a><span class="lineno"> 470</span>  <span class="keywordtype">double</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#ac3a665f34e5aee05a6d36abb5289f796">sum_cell_volumes</a>();<span class="comment"></span></div>
|
|
<div class="line"><a name="l00471"></a><span class="lineno"> 471</span> <span class="comment"> /** Dumps particle IDs, positions and radii to a file.</span></div>
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<div class="line"><a name="l00472"></a><span class="lineno"> 472</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
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<div class="line"><a name="l00473"></a><span class="lineno"> 473</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
|
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<div class="line"><a name="l00475"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#a3760b525f8c9dd5b360e6e4a80294d9a"> 475</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a3760b525f8c9dd5b360e6e4a80294d9a">draw_particles</a>(c_loop &vl,FILE *fp) {</div>
|
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<div class="line"><a name="l00476"></a><span class="lineno"> 476</span>  <span class="keywordtype">double</span> *pp;</div>
|
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<div class="line"><a name="l00477"></a><span class="lineno"> 477</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> {</div>
|
|
<div class="line"><a name="l00478"></a><span class="lineno"> 478</span>  pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[vl.ijk]+4*vl.q;</div>
|
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<div class="line"><a name="l00479"></a><span class="lineno"> 479</span>  fprintf(fp,<span class="stringliteral">"%d %g %g %g %g\n"</span>,<span class="keywordtype">id</span>[vl.ijk][vl.q],*pp,pp[1],pp[2],pp[3]);</div>
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<div class="line"><a name="l00480"></a><span class="lineno"> 480</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00481"></a><span class="lineno"> 481</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00482"></a><span class="lineno"> 482</span> <span class="comment"> /** Dumps all of the particle IDs, positions and radii to a</span></div>
|
|
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span> <span class="comment"> * file.</span></div>
|
|
<div class="line"><a name="l00484"></a><span class="lineno"> 484</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00485"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#afa2993c7ef337244c73b073a3f546df7"> 485</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#afa2993c7ef337244c73b073a3f546df7">draw_particles</a>(FILE *fp=stdout) {</div>
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<div class="line"><a name="l00486"></a><span class="lineno"> 486</span>  <a class="code" href="classvoro_1_1c__loop__all__periodic.html">c_loop_all_periodic</a> vl(*<span class="keyword">this</span>);</div>
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|
<div class="line"><a name="l00487"></a><span class="lineno"> 487</span>  <a class="code" href="classvoro_1_1container__periodic__poly.html#a3760b525f8c9dd5b360e6e4a80294d9a">draw_particles</a>(vl,fp);</div>
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<div class="line"><a name="l00488"></a><span class="lineno"> 488</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span> <span class="comment"> /** Dumps all of the particle IDs, positions and radii to a</span></div>
|
|
<div class="line"><a name="l00490"></a><span class="lineno"> 490</span> <span class="comment"> * file.</span></div>
|
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<div class="line"><a name="l00491"></a><span class="lineno"> 491</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
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<div class="line"><a name="l00492"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#a7bfb4757df738760c59d4f8905a92c17"> 492</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a7bfb4757df738760c59d4f8905a92c17">draw_particles</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
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<div class="line"><a name="l00493"></a><span class="lineno"> 493</span>  FILE *fp=safe_fopen(filename,<span class="stringliteral">"w"</span>);</div>
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<div class="line"><a name="l00494"></a><span class="lineno"> 494</span>  <a class="code" href="classvoro_1_1container__periodic__poly.html#a3760b525f8c9dd5b360e6e4a80294d9a">draw_particles</a>(fp);</div>
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<div class="line"><a name="l00495"></a><span class="lineno"> 495</span>  fclose(fp);</div>
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<div class="line"><a name="l00496"></a><span class="lineno"> 496</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00497"></a><span class="lineno"> 497</span> <span class="comment"> /** Dumps particle positions in POV-Ray format.</span></div>
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<div class="line"><a name="l00498"></a><span class="lineno"> 498</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
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<div class="line"><a name="l00499"></a><span class="lineno"> 499</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
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<div class="line"><a name="l00500"></a><span class="lineno"> 500</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
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<div class="line"><a name="l00501"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#aa9c1c012d0826c2fd28682ded2dd90f1"> 501</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#aa9c1c012d0826c2fd28682ded2dd90f1">draw_particles_pov</a>(c_loop &vl,FILE *fp) {</div>
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<div class="line"><a name="l00502"></a><span class="lineno"> 502</span>  <span class="keywordtype">double</span> *pp;</div>
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<div class="line"><a name="l00503"></a><span class="lineno"> 503</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> {</div>
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<div class="line"><a name="l00504"></a><span class="lineno"> 504</span>  pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[vl.ijk]+4*vl.q;</div>
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<div class="line"><a name="l00505"></a><span class="lineno"> 505</span>  fprintf(fp,<span class="stringliteral">"// id %d\nsphere{<%g,%g,%g>,%g}\n"</span>,</div>
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<div class="line"><a name="l00506"></a><span class="lineno"> 506</span>  <span class="keywordtype">id</span>[vl.ijk][vl.q],*pp,pp[1],pp[2],pp[3]);</div>
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<div class="line"><a name="l00507"></a><span class="lineno"> 507</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
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<div class="line"><a name="l00508"></a><span class="lineno"> 508</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00509"></a><span class="lineno"> 509</span> <span class="comment"> /** Dumps all the particle positions in POV-Ray format.</span></div>
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<div class="line"><a name="l00510"></a><span class="lineno"> 510</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
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<div class="line"><a name="l00511"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#a5bf55c7e6ace75b00aa245636afb82b7"> 511</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a5bf55c7e6ace75b00aa245636afb82b7">draw_particles_pov</a>(FILE *fp=stdout) {</div>
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<div class="line"><a name="l00512"></a><span class="lineno"> 512</span>  <a class="code" href="classvoro_1_1c__loop__all__periodic.html">c_loop_all_periodic</a> vl(*<span class="keyword">this</span>);</div>
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<div class="line"><a name="l00513"></a><span class="lineno"> 513</span>  <a class="code" href="classvoro_1_1container__periodic__poly.html#aa9c1c012d0826c2fd28682ded2dd90f1">draw_particles_pov</a>(vl,fp);</div>
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<div class="line"><a name="l00514"></a><span class="lineno"> 514</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00515"></a><span class="lineno"> 515</span> <span class="comment"> /** Dumps all the particle positions in POV-Ray format.</span></div>
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<div class="line"><a name="l00516"></a><span class="lineno"> 516</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
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<div class="line"><a name="l00517"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#acd3e09b90187ab0ebb521d16d914b9a0"> 517</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#acd3e09b90187ab0ebb521d16d914b9a0">draw_particles_pov</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
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<div class="line"><a name="l00518"></a><span class="lineno"> 518</span>  FILE *fp(safe_fopen(filename,<span class="stringliteral">"w"</span>));</div>
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<div class="line"><a name="l00519"></a><span class="lineno"> 519</span>  <a class="code" href="classvoro_1_1container__periodic__poly.html#aa9c1c012d0826c2fd28682ded2dd90f1">draw_particles_pov</a>(fp);</div>
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<div class="line"><a name="l00520"></a><span class="lineno"> 520</span>  fclose(fp);</div>
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<div class="line"><a name="l00521"></a><span class="lineno"> 521</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00522"></a><span class="lineno"> 522</span> <span class="comment"> /** Computes Voronoi cells and saves the output in gnuplot</span></div>
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<div class="line"><a name="l00523"></a><span class="lineno"> 523</span> <span class="comment"> * format.</span></div>
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<div class="line"><a name="l00524"></a><span class="lineno"> 524</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
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<div class="line"><a name="l00525"></a><span class="lineno"> 525</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
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<div class="line"><a name="l00526"></a><span class="lineno"> 526</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
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<div class="line"><a name="l00527"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#aa4561672ab91f1064748dd18d340335c"> 527</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#aa4561672ab91f1064748dd18d340335c">draw_cells_gnuplot</a>(c_loop &vl,FILE *fp) {</div>
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<div class="line"><a name="l00528"></a><span class="lineno"> 528</span>  <a class="code" href="classvoro_1_1voronoicell.html">voronoicell</a> c;<span class="keywordtype">double</span> *pp;</div>
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<div class="line"><a name="l00529"></a><span class="lineno"> 529</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__periodic__poly.html#a399d6b409b62005a0da290a89c4fdadb">compute_cell</a>(c,vl)) {</div>
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<div class="line"><a name="l00530"></a><span class="lineno"> 530</span>  pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[vl.ijk]+<a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>*vl.q;</div>
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<div class="line"><a name="l00531"></a><span class="lineno"> 531</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a1c0657c1d89313089bbd437170c97d46">draw_gnuplot</a>(*pp,pp[1],pp[2],fp);</div>
|
|
<div class="line"><a name="l00532"></a><span class="lineno"> 532</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00533"></a><span class="lineno"> 533</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00534"></a><span class="lineno"> 534</span> <span class="comment"> /** Compute all Voronoi cells and saves the output in gnuplot</span></div>
|
|
<div class="line"><a name="l00535"></a><span class="lineno"> 535</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00536"></a><span class="lineno"> 536</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00537"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#aed830c459b6f9b1a8ef130d0641c3ead"> 537</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#aed830c459b6f9b1a8ef130d0641c3ead">draw_cells_gnuplot</a>(FILE *fp=stdout) {</div>
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|
<div class="line"><a name="l00538"></a><span class="lineno"> 538</span>  <a class="code" href="classvoro_1_1c__loop__all__periodic.html">c_loop_all_periodic</a> vl(*<span class="keyword">this</span>);</div>
|
|
<div class="line"><a name="l00539"></a><span class="lineno"> 539</span>  <a class="code" href="classvoro_1_1container__periodic__poly.html#aa4561672ab91f1064748dd18d340335c">draw_cells_gnuplot</a>(vl,fp);</div>
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|
<div class="line"><a name="l00540"></a><span class="lineno"> 540</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00541"></a><span class="lineno"> 541</span> <span class="comment"> /** Compute all Voronoi cells and saves the output in gnuplot</span></div>
|
|
<div class="line"><a name="l00542"></a><span class="lineno"> 542</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00543"></a><span class="lineno"> 543</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
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<div class="line"><a name="l00544"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#a6bfd38989da6891d35111ad61a5b3634"> 544</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a6bfd38989da6891d35111ad61a5b3634">draw_cells_gnuplot</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
|
|
<div class="line"><a name="l00545"></a><span class="lineno"> 545</span>  FILE *fp(safe_fopen(filename,<span class="stringliteral">"w"</span>));</div>
|
|
<div class="line"><a name="l00546"></a><span class="lineno"> 546</span>  <a class="code" href="classvoro_1_1container__periodic__poly.html#aa4561672ab91f1064748dd18d340335c">draw_cells_gnuplot</a>(fp);</div>
|
|
<div class="line"><a name="l00547"></a><span class="lineno"> 547</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00548"></a><span class="lineno"> 548</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00549"></a><span class="lineno"> 549</span> <span class="comment"> /** Computes Voronoi cells and saves the output in POV-Ray</span></div>
|
|
<div class="line"><a name="l00550"></a><span class="lineno"> 550</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00551"></a><span class="lineno"> 551</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00552"></a><span class="lineno"> 552</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00553"></a><span class="lineno"> 553</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00554"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#a78c92412a5127918249bc9fbe14e6b52"> 554</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a78c92412a5127918249bc9fbe14e6b52">draw_cells_pov</a>(c_loop &vl,FILE *fp) {</div>
|
|
<div class="line"><a name="l00555"></a><span class="lineno"> 555</span>  <a class="code" href="classvoro_1_1voronoicell.html">voronoicell</a> c;<span class="keywordtype">double</span> *pp;</div>
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<div class="line"><a name="l00556"></a><span class="lineno"> 556</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__periodic__poly.html#a399d6b409b62005a0da290a89c4fdadb">compute_cell</a>(c,vl)) {</div>
|
|
<div class="line"><a name="l00557"></a><span class="lineno"> 557</span>  fprintf(fp,<span class="stringliteral">"// cell %d\n"</span>,<span class="keywordtype">id</span>[vl.ijk][vl.q]);</div>
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<div class="line"><a name="l00558"></a><span class="lineno"> 558</span>  pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[vl.ijk]+<a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>*vl.q;</div>
|
|
<div class="line"><a name="l00559"></a><span class="lineno"> 559</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a923ffa62bd5d62070cd29e01f3a1327a">draw_pov</a>(*pp,pp[1],pp[2],fp);</div>
|
|
<div class="line"><a name="l00560"></a><span class="lineno"> 560</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00561"></a><span class="lineno"> 561</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00562"></a><span class="lineno"> 562</span> <span class="comment"> /** Computes all Voronoi cells and saves the output in POV-Ray</span></div>
|
|
<div class="line"><a name="l00563"></a><span class="lineno"> 563</span> <span class="comment"> * format.</span></div>
|
|
<div class="line"><a name="l00564"></a><span class="lineno"> 564</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
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<div class="line"><a name="l00565"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#a23b1f79f3cc8cee7c4b4d9470a0ee6f0"> 565</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a23b1f79f3cc8cee7c4b4d9470a0ee6f0">draw_cells_pov</a>(FILE *fp=stdout) {</div>
|
|
<div class="line"><a name="l00566"></a><span class="lineno"> 566</span>  <a class="code" href="classvoro_1_1c__loop__all__periodic.html">c_loop_all_periodic</a> vl(*<span class="keyword">this</span>);</div>
|
|
<div class="line"><a name="l00567"></a><span class="lineno"> 567</span>  <a class="code" href="classvoro_1_1container__periodic__poly.html#a78c92412a5127918249bc9fbe14e6b52">draw_cells_pov</a>(vl,fp);</div>
|
|
<div class="line"><a name="l00568"></a><span class="lineno"> 568</span>  }<span class="comment"></span></div>
|
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<div class="line"><a name="l00569"></a><span class="lineno"> 569</span> <span class="comment"> /** Computes all Voronoi cells and saves the output in POV-Ray</span></div>
|
|
<div class="line"><a name="l00570"></a><span class="lineno"> 570</span> <span class="comment"> * format.</span></div>
|
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<div class="line"><a name="l00571"></a><span class="lineno"> 571</span> <span class="comment"> * \param[in] filename the name of the file to write to. */</span></div>
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<div class="line"><a name="l00572"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#a7f64711de2a4ce09c1cc2c0e5cbdf9f5"> 572</a></span>  <span class="keyword">inline</span> <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a7f64711de2a4ce09c1cc2c0e5cbdf9f5">draw_cells_pov</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *filename) {</div>
|
|
<div class="line"><a name="l00573"></a><span class="lineno"> 573</span>  FILE *fp(safe_fopen(filename,<span class="stringliteral">"w"</span>));</div>
|
|
<div class="line"><a name="l00574"></a><span class="lineno"> 574</span>  <a class="code" href="classvoro_1_1container__periodic__poly.html#a78c92412a5127918249bc9fbe14e6b52">draw_cells_pov</a>(fp);</div>
|
|
<div class="line"><a name="l00575"></a><span class="lineno"> 575</span>  fclose(fp);</div>
|
|
<div class="line"><a name="l00576"></a><span class="lineno"> 576</span>  }<span class="comment"></span></div>
|
|
<div class="line"><a name="l00577"></a><span class="lineno"> 577</span> <span class="comment"> /** Computes the Voronoi cells and saves customized information</span></div>
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<div class="line"><a name="l00578"></a><span class="lineno"> 578</span> <span class="comment"> * about them.</span></div>
|
|
<div class="line"><a name="l00579"></a><span class="lineno"> 579</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
|
|
<div class="line"><a name="l00580"></a><span class="lineno"> 580</span> <span class="comment"> * \param[in] format the custom output string to use.</span></div>
|
|
<div class="line"><a name="l00581"></a><span class="lineno"> 581</span> <span class="comment"> * \param[in] fp a file handle to write to. */</span></div>
|
|
<div class="line"><a name="l00582"></a><span class="lineno"> 582</span>  <span class="keyword">template</span><<span class="keyword">class</span> c_loop></div>
|
|
<div class="line"><a name="l00583"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#a7f4fc079c9386a4440417a38866acfa5"> 583</a></span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a7f4fc079c9386a4440417a38866acfa5">print_custom</a>(c_loop &vl,<span class="keyword">const</span> <span class="keywordtype">char</span> *format,FILE *fp) {</div>
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|
<div class="line"><a name="l00584"></a><span class="lineno"> 584</span>  <span class="keywordtype">int</span> ijk,q;<span class="keywordtype">double</span> *pp;</div>
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<div class="line"><a name="l00585"></a><span class="lineno"> 585</span>  <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1voro__base.html#a95d9ee6c1610afccf265198ae63b5e88">contains_neighbor</a>(format)) {</div>
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<div class="line"><a name="l00586"></a><span class="lineno"> 586</span>  <a class="code" href="classvoro_1_1voronoicell__neighbor.html">voronoicell_neighbor</a> c;</div>
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|
<div class="line"><a name="l00587"></a><span class="lineno"> 587</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__periodic__poly.html#a399d6b409b62005a0da290a89c4fdadb">compute_cell</a>(c,vl)) {</div>
|
|
<div class="line"><a name="l00588"></a><span class="lineno"> 588</span>  ijk=vl.ijk;q=vl.q;pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[ijk]+<a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>*q;</div>
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|
<div class="line"><a name="l00589"></a><span class="lineno"> 589</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a095c6bfc1b9b7a087d0b35b443e5c023">output_custom</a>(format,<span class="keywordtype">id</span>[ijk][q],*pp,pp[1],pp[2],pp[3],fp);</div>
|
|
<div class="line"><a name="l00590"></a><span class="lineno"> 590</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
|
|
<div class="line"><a name="l00591"></a><span class="lineno"> 591</span>  } <span class="keywordflow">else</span> {</div>
|
|
<div class="line"><a name="l00592"></a><span class="lineno"> 592</span>  <a class="code" href="classvoro_1_1voronoicell.html">voronoicell</a> c;</div>
|
|
<div class="line"><a name="l00593"></a><span class="lineno"> 593</span>  <span class="keywordflow">if</span>(vl.start()) <span class="keywordflow">do</span> <span class="keywordflow">if</span>(<a class="code" href="classvoro_1_1container__periodic__poly.html#a399d6b409b62005a0da290a89c4fdadb">compute_cell</a>(c,vl)) {</div>
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<div class="line"><a name="l00594"></a><span class="lineno"> 594</span>  ijk=vl.ijk;q=vl.q;pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[ijk]+<a class="code" href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">ps</a>*q;</div>
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<div class="line"><a name="l00595"></a><span class="lineno"> 595</span>  c.<a class="code" href="classvoro_1_1voronoicell__base.html#a095c6bfc1b9b7a087d0b35b443e5c023">output_custom</a>(format,<span class="keywordtype">id</span>[ijk][q],*pp,pp[1],pp[2],pp[3],fp);</div>
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<div class="line"><a name="l00596"></a><span class="lineno"> 596</span>  } <span class="keywordflow">while</span>(vl.inc());</div>
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<div class="line"><a name="l00597"></a><span class="lineno"> 597</span>  }</div>
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<div class="line"><a name="l00598"></a><span class="lineno"> 598</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00599"></a><span class="lineno"> 599</span> <span class="comment"> /** Computes the Voronoi cell for a particle currently being</span></div>
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<div class="line"><a name="l00600"></a><span class="lineno"> 600</span> <span class="comment"> * referenced by a loop class.</span></div>
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<div class="line"><a name="l00601"></a><span class="lineno"> 601</span> <span class="comment"> * \param[out] c a Voronoi cell class in which to store the</span></div>
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<div class="line"><a name="l00602"></a><span class="lineno"> 602</span> <span class="comment"> * computed cell.</span></div>
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<div class="line"><a name="l00603"></a><span class="lineno"> 603</span> <span class="comment"> * \param[in] vl the loop class to use.</span></div>
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<div class="line"><a name="l00604"></a><span class="lineno"> 604</span> <span class="comment"> * \return True if the cell was computed. If the cell cannot be</span></div>
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<div class="line"><a name="l00605"></a><span class="lineno"> 605</span> <span class="comment"> * computed because it was removed entirely for some reason,</span></div>
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<div class="line"><a name="l00606"></a><span class="lineno"> 606</span> <span class="comment"> * then the routine returns false. */</span></div>
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<div class="line"><a name="l00607"></a><span class="lineno"> 607</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell,<span class="keyword">class</span> c_loop></div>
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<div class="line"><a name="l00608"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#a399d6b409b62005a0da290a89c4fdadb"> 608</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a399d6b409b62005a0da290a89c4fdadb">compute_cell</a>(v_cell &c,c_loop &vl) {</div>
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<div class="line"><a name="l00609"></a><span class="lineno"> 609</span>  <span class="keywordflow">return</span> vc.compute_cell(c,vl.ijk,vl.q,vl.i,vl.j,vl.k);</div>
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<div class="line"><a name="l00610"></a><span class="lineno"> 610</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00611"></a><span class="lineno"> 611</span> <span class="comment"> /** Computes the Voronoi cell for given particle.</span></div>
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<div class="line"><a name="l00612"></a><span class="lineno"> 612</span> <span class="comment"> * \param[out] c a Voronoi cell class in which to store the</span></div>
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<div class="line"><a name="l00613"></a><span class="lineno"> 613</span> <span class="comment"> * computed cell.</span></div>
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<div class="line"><a name="l00614"></a><span class="lineno"> 614</span> <span class="comment"> * \param[in] ijk the block that the particle is within.</span></div>
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<div class="line"><a name="l00615"></a><span class="lineno"> 615</span> <span class="comment"> * \param[in] q the index of the particle within the block.</span></div>
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<div class="line"><a name="l00616"></a><span class="lineno"> 616</span> <span class="comment"> * \return True if the cell was computed. If the cell cannot be</span></div>
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<div class="line"><a name="l00617"></a><span class="lineno"> 617</span> <span class="comment"> * computed because it was removed entirely for some reason,</span></div>
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<div class="line"><a name="l00618"></a><span class="lineno"> 618</span> <span class="comment"> * then the routine returns false. */</span></div>
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<div class="line"><a name="l00619"></a><span class="lineno"> 619</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell></div>
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<div class="line"><a name="l00620"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#abd0fd5314a1d1e50721d2320171064e8"> 620</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#abd0fd5314a1d1e50721d2320171064e8">compute_cell</a>(v_cell &c,<span class="keywordtype">int</span> ijk,<span class="keywordtype">int</span> q) {</div>
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<div class="line"><a name="l00621"></a><span class="lineno"> 621</span>  <span class="keywordtype">int</span> k(ijk/(<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>*<a class="code" href="classvoro_1_1container__periodic__base.html#aa143ce1ecd9093f7c1889a0481b4cbb5">oy</a>)),ijkt(ijk-(<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>*oy)*k),j(ijkt/<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>),i(ijkt-j*<a class="code" href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">nx</a>);</div>
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<div class="line"><a name="l00622"></a><span class="lineno"> 622</span>  <span class="keywordflow">return</span> vc.compute_cell(c,ijk,q,i,j,k);</div>
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<div class="line"><a name="l00623"></a><span class="lineno"> 623</span>  }<span class="comment"></span></div>
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<div class="line"><a name="l00624"></a><span class="lineno"> 624</span> <span class="comment"> /** Computes the Voronoi cell for a ghost particle at a given</span></div>
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<div class="line"><a name="l00625"></a><span class="lineno"> 625</span> <span class="comment"> * location.</span></div>
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<div class="line"><a name="l00626"></a><span class="lineno"> 626</span> <span class="comment"> * \param[out] c a Voronoi cell class in which to store the</span></div>
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<div class="line"><a name="l00627"></a><span class="lineno"> 627</span> <span class="comment"> * computed cell.</span></div>
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<div class="line"><a name="l00628"></a><span class="lineno"> 628</span> <span class="comment"> * \param[in] (x,y,z) the location of the ghost particle.</span></div>
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<div class="line"><a name="l00629"></a><span class="lineno"> 629</span> <span class="comment"> * \param[in] r the radius of the ghost particle.</span></div>
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<div class="line"><a name="l00630"></a><span class="lineno"> 630</span> <span class="comment"> * \return True if the cell was computed. If the cell cannot be</span></div>
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<div class="line"><a name="l00631"></a><span class="lineno"> 631</span> <span class="comment"> * computed, if it is removed entirely by a wall or boundary</span></div>
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<div class="line"><a name="l00632"></a><span class="lineno"> 632</span> <span class="comment"> * condition, then the routine returns false. */</span></div>
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<div class="line"><a name="l00633"></a><span class="lineno"> 633</span>  <span class="keyword">template</span><<span class="keyword">class</span> v_cell></div>
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<div class="line"><a name="l00634"></a><span class="lineno"><a class="line" href="classvoro_1_1container__periodic__poly.html#a072de3a0be638f85ecd8cc6e26467879"> 634</a></span>  <span class="keyword">inline</span> <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a072de3a0be638f85ecd8cc6e26467879">compute_ghost_cell</a>(v_cell &c,<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">double</span> r) {</div>
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<div class="line"><a name="l00635"></a><span class="lineno"> 635</span>  <span class="keywordtype">int</span> ijk;</div>
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<div class="line"><a name="l00636"></a><span class="lineno"> 636</span>  <a class="code" href="classvoro_1_1container__periodic__base.html#afcffffda4a00a48acb4243a74ed59c05">put_locate_block</a>(ijk,x,y,z);</div>
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<div class="line"><a name="l00637"></a><span class="lineno"> 637</span>  <span class="keywordtype">double</span> *pp=<a class="code" href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">p</a>[ijk]+4*<a class="code" href="classvoro_1_1container__periodic__base.html#a8ae965b9dbb02a92e8dcb0d082d625a2">co</a>[ijk]++,tm=<a class="code" href="classvoro_1_1radius__poly.html#a9faed3ac8ef95c646e376a7fe915fb0b">max_radius</a>;</div>
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<div class="line"><a name="l00638"></a><span class="lineno"> 638</span>  *(pp++)=x;*(pp++)=y;*(pp++)=z;*pp=r;</div>
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<div class="line"><a name="l00639"></a><span class="lineno"> 639</span>  <span class="keywordflow">if</span>(r><a class="code" href="classvoro_1_1radius__poly.html#a9faed3ac8ef95c646e376a7fe915fb0b">max_radius</a>) <a class="code" href="classvoro_1_1radius__poly.html#a9faed3ac8ef95c646e376a7fe915fb0b">max_radius</a>=r;</div>
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<div class="line"><a name="l00640"></a><span class="lineno"> 640</span>  <span class="keywordtype">bool</span> q=<a class="code" href="classvoro_1_1container__periodic__poly.html#a399d6b409b62005a0da290a89c4fdadb">compute_cell</a>(c,ijk,co[ijk]-1);</div>
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<div class="line"><a name="l00641"></a><span class="lineno"> 641</span>  co[ijk]--;<a class="code" href="classvoro_1_1radius__poly.html#a9faed3ac8ef95c646e376a7fe915fb0b">max_radius</a>=tm;</div>
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<div class="line"><a name="l00642"></a><span class="lineno"> 642</span>  <span class="keywordflow">return</span> q;</div>
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<div class="line"><a name="l00643"></a><span class="lineno"> 643</span>  }</div>
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<div class="line"><a name="l00644"></a><span class="lineno"> 644</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a7f4fc079c9386a4440417a38866acfa5">print_custom</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *format,FILE *fp=stdout);</div>
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<div class="line"><a name="l00645"></a><span class="lineno"> 645</span>  <span class="keywordtype">void</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#a7f4fc079c9386a4440417a38866acfa5">print_custom</a>(<span class="keyword">const</span> <span class="keywordtype">char</span> *format,<span class="keyword">const</span> <span class="keywordtype">char</span> *filename);</div>
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<div class="line"><a name="l00646"></a><span class="lineno"> 646</span>  <span class="keywordtype">bool</span> <a class="code" href="classvoro_1_1container__periodic__poly.html#ac3536b067b34a16efada8286ebc50586">find_voronoi_cell</a>(<span class="keywordtype">double</span> x,<span class="keywordtype">double</span> y,<span class="keywordtype">double</span> z,<span class="keywordtype">double</span> &rx,<span class="keywordtype">double</span> &ry,<span class="keywordtype">double</span> &rz,<span class="keywordtype">int</span> &pid);</div>
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<div class="line"><a name="l00647"></a><span class="lineno"> 647</span>  <span class="keyword">private</span>:</div>
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<div class="line"><a name="l00648"></a><span class="lineno"> 648</span>  <a class="code" href="classvoro_1_1voro__compute.html">voro_compute<container_periodic_poly></a> vc;</div>
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<div class="line"><a name="l00649"></a><span class="lineno"> 649</span>  <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="classvoro_1_1voro__compute.html">voro_compute</a><<a class="code" href="classvoro_1_1container__periodic__poly.html">container_periodic_poly</a>>;</div>
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<div class="line"><a name="l00650"></a><span class="lineno"> 650</span> };</div>
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<div class="line"><a name="l00651"></a><span class="lineno"> 651</span> </div>
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<div class="line"><a name="l00652"></a><span class="lineno"> 652</span> }</div>
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<div class="line"><a name="l00653"></a><span class="lineno"> 653</span> </div>
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<div class="line"><a name="l00654"></a><span class="lineno"> 654</span> <span class="preprocessor">#endif</span></div>
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<div class="ttc" id="classvoro_1_1unitcell_html_aba3ac9d30b539fb0017799555199c2df"><div class="ttname"><a href="classvoro_1_1unitcell.html#aba3ac9d30b539fb0017799555199c2df">voro::unitcell::bx</a></div><div class="ttdeci">const double bx</div><div class="ttdef"><b>Definition:</b> <a href="unitcell_8hh_source.html#l00026">unitcell.hh:26</a></div></div>
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<div class="ttc" id="classvoro_1_1voronoicell__neighbor_html"><div class="ttname"><a href="classvoro_1_1voronoicell__neighbor.html">voro::voronoicell_neighbor</a></div><div class="ttdoc">Extension of the voronoicell_base class to represent a Voronoi cell with neighbor information...</div><div class="ttdef"><b>Definition:</b> <a href="cell_8hh_source.html#l00403">cell.hh:403</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a8d3545b219d91aee864b224829b6a644"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a8d3545b219d91aee864b224829b6a644">voro::container_periodic_base::create_vertical_image</a></div><div class="ttdeci">void create_vertical_image(int di, int dj, int dk)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00627">container_prd.cc:627</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_ac3536b067b34a16efada8286ebc50586"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#ac3536b067b34a16efada8286ebc50586">voro::container_periodic_poly::find_voronoi_cell</a></div><div class="ttdeci">bool find_voronoi_cell(double x, double y, double z, double &rx, double &ry, double &rz, int &pid)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00331">container_prd.cc:331</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_adc3616c10fe7b40795951b5cd8dc8c74"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#adc3616c10fe7b40795951b5cd8dc8c74">voro::container_periodic_poly::container_periodic_poly</a></div><div class="ttdeci">container_periodic_poly(double bx_, double bxy_, double by_, double bxz_, double byz_, double bz_, int nx_, int ny_, int nz_, int init_mem_)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00085">container_prd.cc:85</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_a6bfd38989da6891d35111ad61a5b3634"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#a6bfd38989da6891d35111ad61a5b3634">voro::container_periodic_poly::draw_cells_gnuplot</a></div><div class="ttdeci">void draw_cells_gnuplot(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00544">container_prd.hh:544</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html">voro::container_periodic_poly</a></div><div class="ttdoc">Extension of the container_periodic_base class for computing radical Voronoi tessellations. </div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00433">container_prd.hh:433</a></div></div>
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<div class="ttc" id="classvoro_1_1voronoicell__base_html_a1c0657c1d89313089bbd437170c97d46"><div class="ttname"><a href="classvoro_1_1voronoicell__base.html#a1c0657c1d89313089bbd437170c97d46">voro::voronoicell_base::draw_gnuplot</a></div><div class="ttdeci">void draw_gnuplot(double x, double y, double z, FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="cell_8cc_source.html#l01507">cell.cc:1507</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a812ed5572fcfece48b73517fcf913ec0"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a812ed5572fcfece48b73517fcf913ec0">voro::container_periodic_base::initialize_search</a></div><div class="ttdeci">void initialize_search(int ci, int cj, int ck, int ijk, int &i, int &j, int &k, int &disp)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00142">container_prd.hh:142</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_ac931a6c1cab4b2e910a0d07969b38785"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#ac931a6c1cab4b2e910a0d07969b38785">voro::container_periodic_base::print_all_particles</a></div><div class="ttdeci">void print_all_particles()</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00099">container_prd.hh:99</a></div></div>
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<div class="ttc" id="classvoro_1_1radius__poly_html"><div class="ttname"><a href="classvoro_1_1radius__poly.html">voro::radius_poly</a></div><div class="ttdoc">Class containing all of the routines that are specific to computing the radical Voronoi tessellation...</div><div class="ttdef"><b>Definition:</b> <a href="rad__option_8hh_source.html#l00082">rad_option.hh:82</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_aa9c1c012d0826c2fd28682ded2dd90f1"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#aa9c1c012d0826c2fd28682ded2dd90f1">voro::container_periodic_poly::draw_particles_pov</a></div><div class="ttdeci">void draw_particles_pov(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00501">container_prd.hh:501</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_ae1dfc876e56ec254053c7672b4454313"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#ae1dfc876e56ec254053c7672b4454313">voro::container_periodic_base::oxyz</a></div><div class="ttdeci">int oxyz</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00064">container_prd.hh:64</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_add72546a646600a12ccda1be8041213a"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#add72546a646600a12ccda1be8041213a">voro::container_periodic_base::add_particle_memory</a></div><div class="ttdeci">void add_particle_memory(int i)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00357">container_prd.cc:357</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a90658551a7621bedfea141f052443fe1"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a90658551a7621bedfea141f052443fe1">voro::container_periodic_base::img</a></div><div class="ttdeci">char * img</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00083">container_prd.hh:83</a></div></div>
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<div class="ttc" id="rad__option_8hh_html"><div class="ttname"><a href="rad__option_8hh.html">rad_option.hh</a></div><div class="ttdoc">Header file for the classes encapsulating functionality for the regular and radical Voronoi tessellat...</div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_aa4561672ab91f1064748dd18d340335c"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#aa4561672ab91f1064748dd18d340335c">voro::container_periodic_poly::draw_cells_gnuplot</a></div><div class="ttdeci">void draw_cells_gnuplot(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00527">container_prd.hh:527</a></div></div>
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<div class="ttc" id="c__loops_8hh_html"><div class="ttname"><a href="c__loops_8hh.html">c_loops.hh</a></div><div class="ttdoc">Header file for the loop classes. </div></div>
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<div class="ttc" id="classvoro_1_1voro__base_html"><div class="ttname"><a href="classvoro_1_1voro__base.html">voro::voro_base</a></div><div class="ttdoc">Class containing data structures common across all particle container classes. </div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00025">v_base.hh:25</a></div></div>
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<div class="ttc" id="classvoro_1_1voro__base_html_a3ad6b0eefbdff03e92d30f5035defdd1"><div class="ttname"><a href="classvoro_1_1voro__base.html#a3ad6b0eefbdff03e92d30f5035defdd1">voro::voro_base::boxy</a></div><div class="ttdeci">const double boxy</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00043">v_base.hh:43</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a012ffc20dd6379bcbd26ddc0c5cc8591"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a012ffc20dd6379bcbd26ddc0c5cc8591">voro::container_periodic_base::wy</a></div><div class="ttdeci">int wy</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00053">container_prd.hh:53</a></div></div>
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<div class="ttc" id="classvoro_1_1unitcell_html_a0844f70778cc7b19024ed28a2c7ad02c"><div class="ttname"><a href="classvoro_1_1unitcell.html#a0844f70778cc7b19024ed28a2c7ad02c">voro::unitcell::unit_voro</a></div><div class="ttdeci">voronoicell unit_voro</div><div class="ttdef"><b>Definition:</b> <a href="unitcell_8hh_source.html#l00044">unitcell.hh:44</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a72efe37cb7876149cac5f5ead579b353"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a72efe37cb7876149cac5f5ead579b353">voro::container_periodic_base::put_image</a></div><div class="ttdeci">void put_image(int reg, int fijk, int l, double dx, double dy, double dz)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00758">container_prd.cc:758</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_a5bf55c7e6ace75b00aa245636afb82b7"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#a5bf55c7e6ace75b00aa245636afb82b7">voro::container_periodic_poly::draw_particles_pov</a></div><div class="ttdeci">void draw_particles_pov(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00511">container_prd.hh:511</a></div></div>
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<div class="ttc" id="cell_8hh_html"><div class="ttname"><a href="cell_8hh.html">cell.hh</a></div><div class="ttdoc">Header file for the voronoicell and related classes. </div></div>
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<div class="ttc" id="config_8hh_html"><div class="ttname"><a href="config_8hh.html">config.hh</a></div><div class="ttdoc">Master configuration file for setting various compile-time options. </div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_a1cbdd9c92900e08173e1ea3a6e2e6df4"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#a1cbdd9c92900e08173e1ea3a6e2e6df4">voro::container_periodic_poly::put</a></div><div class="ttdeci">void put(int n, double x, double y, double z, double r)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00105">container_prd.cc:105</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_a5fa97cb936062142acc29e5870add6c6"><div class="ttname"><a href="classvoro_1_1container__periodic.html#a5fa97cb936062142acc29e5870add6c6">voro::container_periodic::find_voronoi_cell</a></div><div class="ttdeci">bool find_voronoi_cell(double x, double y, double z, double &rx, double &ry, double &rz, int &pid)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00297">container_prd.cc:297</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_a7f64711de2a4ce09c1cc2c0e5cbdf9f5"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#a7f64711de2a4ce09c1cc2c0e5cbdf9f5">voro::container_periodic_poly::draw_cells_pov</a></div><div class="ttdeci">void draw_cells_pov(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00572">container_prd.hh:572</a></div></div>
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<div class="ttc" id="v__compute_8hh_html"><div class="ttname"><a href="v__compute_8hh.html">v_compute.hh</a></div><div class="ttdoc">Header file for the voro_compute template and related classes. </div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a133f1be4a780183fd6bd7c008c65482d"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a133f1be4a780183fd6bd7c008c65482d">voro::container_periodic_base::check_compartmentalized</a></div><div class="ttdeci">void check_compartmentalized()</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00550">container_prd.cc:550</a></div></div>
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<div class="ttc" id="classvoro_1_1unitcell_html"><div class="ttname"><a href="classvoro_1_1unitcell.html">voro::unitcell</a></div><div class="ttdoc">Class for computation of the unit Voronoi cell associated with a 3D non-rectangular periodic domain...</div><div class="ttdef"><b>Definition:</b> <a href="unitcell_8hh_source.html#l00022">unitcell.hh:22</a></div></div>
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<div class="ttc" id="classvoro_1_1radius__poly_html_a9faed3ac8ef95c646e376a7fe915fb0b"><div class="ttname"><a href="classvoro_1_1radius__poly.html#a9faed3ac8ef95c646e376a7fe915fb0b">voro::radius_poly::max_radius</a></div><div class="ttdeci">double max_radius</div><div class="ttdef"><b>Definition:</b> <a href="rad__option_8hh_source.html#l00089">rad_option.hh:89</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_aa16ea029bbf80a1fdec3e6bba675e704"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#aa16ea029bbf80a1fdec3e6bba675e704">voro::container_periodic_base::create_side_image</a></div><div class="ttdeci">void create_side_image(int di, int dj, int dk)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00575">container_prd.cc:575</a></div></div>
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<div class="ttc" id="config_8hh_html_ad8e0de9d48da06e86dd87884e4a2d47e"><div class="ttname"><a href="config_8hh.html#ad8e0de9d48da06e86dd87884e4a2d47e">VOROPP_INTERNAL_ERROR</a></div><div class="ttdeci">#define VOROPP_INTERNAL_ERROR</div><div class="ttdef"><b>Definition:</b> <a href="config_8hh_source.html#l00119">config.hh:119</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_afa9abf680a0dc08650ada11a2eff0be6"><div class="ttname"><a href="classvoro_1_1container__periodic.html#afa9abf680a0dc08650ada11a2eff0be6">voro::container_periodic::put</a></div><div class="ttdeci">void put(int n, double x, double y, double z)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00093">container_prd.cc:93</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a11b7428673e4791fe651036ecda0cd12"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a11b7428673e4791fe651036ecda0cd12">voro::container_periodic_base::create_periodic_image</a></div><div class="ttdeci">void create_periodic_image(int di, int dj, int dk)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00193">container_prd.hh:193</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_a0b374a8ad39646bf22468e535b08a187"><div class="ttname"><a href="classvoro_1_1container__periodic.html#a0b374a8ad39646bf22468e535b08a187">voro::container_periodic::compute_all_cells</a></div><div class="ttdeci">void compute_all_cells()</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00499">container_prd.cc:499</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_ae540389dc8845562c5f8cd45cec71edd"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#ae540389dc8845562c5f8cd45cec71edd">voro::container_periodic_base::initialize_voronoicell</a></div><div class="ttdeci">bool initialize_voronoicell(v_cell &c, int ijk, int q, int ci, int cj, int ck, int &i, int &j, int &k, double &x, double &y, double &z, int &disp)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00124">container_prd.hh:124</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_ace68f8fc6073edb7dd41c30761f899fd"><div class="ttname"><a href="classvoro_1_1container__periodic.html#ace68f8fc6073edb7dd41c30761f899fd">voro::container_periodic::container_periodic</a></div><div class="ttdeci">container_periodic(double bx_, double bxy_, double by_, double bxz_, double byz_, double bz_, int nx_, int ny_, int nz_, int init_mem_)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00072">container_prd.cc:72</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_ae35a7e24438d3290c5dbb39f2474f3f4"><div class="ttname"><a href="classvoro_1_1container__periodic.html#ae35a7e24438d3290c5dbb39f2474f3f4">voro::container_periodic::draw_cells_pov</a></div><div class="ttdeci">void draw_cells_pov(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00342">container_prd.hh:342</a></div></div>
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<div class="ttc" id="unitcell_8hh_html"><div class="ttname"><a href="unitcell_8hh.html">unitcell.hh</a></div><div class="ttdoc">Header file for the unitcell class. </div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_a78c92412a5127918249bc9fbe14e6b52"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#a78c92412a5127918249bc9fbe14e6b52">voro::container_periodic_poly::draw_cells_pov</a></div><div class="ttdeci">void draw_cells_pov(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00554">container_prd.hh:554</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_a0b7b5b922f383d0c8d05e499a887a3b9"><div class="ttname"><a href="classvoro_1_1container__periodic.html#a0b7b5b922f383d0c8d05e499a887a3b9">voro::container_periodic::draw_particles</a></div><div class="ttdeci">void draw_particles(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00269">container_prd.hh:269</a></div></div>
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<div class="ttc" id="classvoro_1_1voro__base_html_a95d9ee6c1610afccf265198ae63b5e88"><div class="ttname"><a href="classvoro_1_1voro__base.html#a95d9ee6c1610afccf265198ae63b5e88">voro::voro_base::contains_neighbor</a></div><div class="ttdeci">bool contains_neighbor(const char *format)</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8cc_source.html#l00100">v_base.cc:100</a></div></div>
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<div class="ttc" id="classvoro_1_1voro__base_html_a59a281a5e25e13f681c4f6a2c8bd1ca7"><div class="ttname"><a href="classvoro_1_1voro__base.html#a59a281a5e25e13f681c4f6a2c8bd1ca7">voro::voro_base::step_div</a></div><div class="ttdeci">int step_div(int a, int b)</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00081">v_base.hh:81</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a407b759a2c2d6baec5183e18a726a4e6"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a407b759a2c2d6baec5183e18a726a4e6">voro::container_periodic_base::ey</a></div><div class="ttdeci">int ey</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00047">container_prd.hh:47</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_a4dd33f8d67680a65864245a90ac883a2"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#a4dd33f8d67680a65864245a90ac883a2">voro::container_periodic_poly::clear</a></div><div class="ttdeci">void clear()</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00454">container_prd.cc:454</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html"><div class="ttname"><a href="classvoro_1_1container__periodic.html">voro::container_periodic</a></div><div class="ttdoc">Extension of the container_periodic_base class for computing regular Voronoi tessellations. </div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00212">container_prd.hh:212</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_a5ed9e19316148b6af242887ccc8ccf60"><div class="ttname"><a href="classvoro_1_1container__periodic.html#a5ed9e19316148b6af242887ccc8ccf60">voro::container_periodic::compute_cell</a></div><div class="ttdeci">bool compute_cell(v_cell &c, int ijk, int q)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00400">container_prd.hh:400</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_a690edc7e6e23393d82faf320aac1b2d9"><div class="ttname"><a href="classvoro_1_1container__periodic.html#a690edc7e6e23393d82faf320aac1b2d9">voro::container_periodic::draw_cells_pov</a></div><div class="ttdeci">void draw_cells_pov(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00349">container_prd.hh:349</a></div></div>
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<div class="ttc" id="classvoro_1_1voronoicell__base_html_a923ffa62bd5d62070cd29e01f3a1327a"><div class="ttname"><a href="classvoro_1_1voronoicell__base.html#a923ffa62bd5d62070cd29e01f3a1327a">voro::voronoicell_base::draw_pov</a></div><div class="ttdeci">void draw_pov(double x, double y, double z, FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="cell_8cc_source.html#l01487">cell.cc:1487</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_adaf8256dd86c8c37618113cee774345f"><div class="ttname"><a href="classvoro_1_1container__periodic.html#adaf8256dd86c8c37618113cee774345f">voro::container_periodic::draw_cells_gnuplot</a></div><div class="ttdeci">void draw_cells_gnuplot(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00314">container_prd.hh:314</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_adeb50c6841166e59a6be150d7adb4212"><div class="ttname"><a href="classvoro_1_1container__periodic.html#adeb50c6841166e59a6be150d7adb4212">voro::container_periodic::print_custom</a></div><div class="ttdeci">void print_custom(c_loop &vl, const char *format, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00360">container_prd.hh:360</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_ac3a665f34e5aee05a6d36abb5289f796"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#ac3a665f34e5aee05a6d36abb5289f796">voro::container_periodic_poly::sum_cell_volumes</a></div><div class="ttdeci">double sum_cell_volumes()</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00532">container_prd.cc:532</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a4eacfa1389d290c753df07df3c88e0a7"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a4eacfa1389d290c753df07df3c88e0a7">voro::container_periodic_base::~container_periodic_base</a></div><div class="ttdeci">~container_periodic_base()</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00052">container_prd.cc:52</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_a399d6b409b62005a0da290a89c4fdadb"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#a399d6b409b62005a0da290a89c4fdadb">voro::container_periodic_poly::compute_cell</a></div><div class="ttdeci">bool compute_cell(v_cell &c, c_loop &vl)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00608">container_prd.hh:608</a></div></div>
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<div class="ttc" id="classvoro_1_1voro__base_html_ac8986e621bd70cf5113e231cb8694d37"><div class="ttname"><a href="classvoro_1_1voro__base.html#ac8986e621bd70cf5113e231cb8694d37">voro::voro_base::boxx</a></div><div class="ttdeci">const double boxx</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00041">v_base.hh:41</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_aed830c459b6f9b1a8ef130d0641c3ead"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#aed830c459b6f9b1a8ef130d0641c3ead">voro::container_periodic_poly::draw_cells_gnuplot</a></div><div class="ttdeci">void draw_cells_gnuplot(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00537">container_prd.hh:537</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_a3760b525f8c9dd5b360e6e4a80294d9a"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#a3760b525f8c9dd5b360e6e4a80294d9a">voro::container_periodic_poly::draw_particles</a></div><div class="ttdeci">void draw_particles(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00475">container_prd.hh:475</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_af008d47998b895aeeb108361a642407d"><div class="ttname"><a href="classvoro_1_1container__periodic.html#af008d47998b895aeeb108361a642407d">voro::container_periodic::draw_particles_pov</a></div><div class="ttdeci">void draw_particles_pov(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00294">container_prd.hh:294</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a8462c3a3079586196e2bd9a764283173"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a8462c3a3079586196e2bd9a764283173">voro::container_periodic_base::region_count</a></div><div class="ttdeci">void region_count()</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00441">container_prd.cc:441</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_adeaa9eab58ba59f2fa3d7176ce617ff1"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#adeaa9eab58ba59f2fa3d7176ce617ff1">voro::container_periodic_base::init_mem</a></div><div class="ttdeci">const int init_mem</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00086">container_prd.hh:86</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_aa0cd2a5bf51968b7af3334f4bbb8df8e"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#aa0cd2a5bf51968b7af3334f4bbb8df8e">voro::container_periodic_base::region_index</a></div><div class="ttdeci">int region_index(int ci, int cj, int ck, int ei, int ej, int ek, double &qx, double &qy, double &qz, int &disp)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00171">container_prd.hh:171</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_ad90cf825d916a83570382f7cfae0461b"><div class="ttname"><a href="classvoro_1_1container__periodic.html#ad90cf825d916a83570382f7cfae0461b">voro::container_periodic::draw_cells_gnuplot</a></div><div class="ttdeci">void draw_cells_gnuplot(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00304">container_prd.hh:304</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a5319c976a873f9b10f80f9038f3460bd"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a5319c976a873f9b10f80f9038f3460bd">voro::container_periodic_base::container_periodic_base</a></div><div class="ttdeci">container_periodic_base(double bx_, double bxy_, double by_, double bxz_, double byz_, double bz_, int nx_, int ny_, int nz_, int init_mem_, int ps)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00029">container_prd.cc:29</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_ab19ca1d361472a1c7dc35023fd20297c"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#ab19ca1d361472a1c7dc35023fd20297c">voro::container_periodic_poly::compute_all_cells</a></div><div class="ttdeci">void compute_all_cells()</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00510">container_prd.cc:510</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a9920ab99f51190399ceda8fb8689364f"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a9920ab99f51190399ceda8fb8689364f">voro::container_periodic_base::ez</a></div><div class="ttdeci">int ez</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00050">container_prd.hh:50</a></div></div>
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<div class="ttc" id="classvoro_1_1voro__base_html_afd53f018c9641c8b8066e9429c88a4e0"><div class="ttname"><a href="classvoro_1_1voro__base.html#afd53f018c9641c8b8066e9429c88a4e0">voro::voro_base::boxz</a></div><div class="ttdeci">const double boxz</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00045">v_base.hh:45</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a301925d00d1d79f3df7b965d02e25608"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a301925d00d1d79f3df7b965d02e25608">voro::container_periodic_base::p</a></div><div class="ttdeci">double ** p</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00071">container_prd.hh:71</a></div></div>
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<div class="ttc" id="v__base_8hh_html"><div class="ttname"><a href="v__base_8hh.html">v_base.hh</a></div><div class="ttdoc">Header file for the base Voronoi container class. </div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_a5394f52caa441d83c5aba6cf0e254116"><div class="ttname"><a href="classvoro_1_1container__periodic.html#a5394f52caa441d83c5aba6cf0e254116">voro::container_periodic::clear</a></div><div class="ttdeci">void clear()</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00448">container_prd.cc:448</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_afa2993c7ef337244c73b073a3f546df7"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#afa2993c7ef337244c73b073a3f546df7">voro::container_periodic_poly::draw_particles</a></div><div class="ttdeci">void draw_particles(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00485">container_prd.hh:485</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_afe16d21568925f78421122cdfb7b0cc0"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#afe16d21568925f78421122cdfb7b0cc0">voro::container_periodic_base::wz</a></div><div class="ttdeci">int wz</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00056">container_prd.hh:56</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_a23b1f79f3cc8cee7c4b4d9470a0ee6f0"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#a23b1f79f3cc8cee7c4b4d9470a0ee6f0">voro::container_periodic_poly::draw_cells_pov</a></div><div class="ttdeci">void draw_cells_pov(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00565">container_prd.hh:565</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_a072de3a0be638f85ecd8cc6e26467879"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#a072de3a0be638f85ecd8cc6e26467879">voro::container_periodic_poly::compute_ghost_cell</a></div><div class="ttdeci">bool compute_ghost_cell(v_cell &c, double x, double y, double z, double r)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00634">container_prd.hh:634</a></div></div>
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<div class="ttc" id="common_8hh_html"><div class="ttname"><a href="common_8hh.html">common.hh</a></div><div class="ttdoc">Header file for the small helper functions. </div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_a4b22d1868b96f049891a4f65e57497e8"><div class="ttname"><a href="classvoro_1_1container__periodic.html#a4b22d1868b96f049891a4f65e57497e8">voro::container_periodic::draw_particles</a></div><div class="ttdeci">void draw_particles(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00254">container_prd.hh:254</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_acd3e09b90187ab0ebb521d16d914b9a0"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#acd3e09b90187ab0ebb521d16d914b9a0">voro::container_periodic_poly::draw_particles_pov</a></div><div class="ttdeci">void draw_particles_pov(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00517">container_prd.hh:517</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_afcffffda4a00a48acb4243a74ed59c05"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#afcffffda4a00a48acb4243a74ed59c05">voro::container_periodic_base::put_locate_block</a></div><div class="ttdeci">void put_locate_block(int &ijk, double &x, double &y, double &z)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00183">container_prd.cc:183</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a5213538964cf869c9751a27bccaf323e"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a5213538964cf869c9751a27bccaf323e">voro::container_periodic_base::ps</a></div><div class="ttdeci">const int ps</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00093">container_prd.hh:93</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_ac5b0b78cf8fe46f7e3c7124dbf4e0729"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#ac5b0b78cf8fe46f7e3c7124dbf4e0729">voro::container_periodic_base::remap</a></div><div class="ttdeci">void remap(int &ai, int &aj, int &ak, int &ci, int &cj, int &ck, double &x, double &y, double &z, int &ijk)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00260">container_prd.cc:260</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_a7bfb4757df738760c59d4f8905a92c17"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#a7bfb4757df738760c59d4f8905a92c17">voro::container_periodic_poly::draw_particles</a></div><div class="ttdeci">void draw_particles(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00492">container_prd.hh:492</a></div></div>
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<div class="ttc" id="classvoro_1_1voronoicell__base_html_a095c6bfc1b9b7a087d0b35b443e5c023"><div class="ttname"><a href="classvoro_1_1voronoicell__base.html#a095c6bfc1b9b7a087d0b35b443e5c023">voro::voronoicell_base::output_custom</a></div><div class="ttdeci">void output_custom(const char *format, FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="cell_8hh_source.html#l00182">cell.hh:182</a></div></div>
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<div class="ttc" id="classvoro_1_1voronoicell_html"><div class="ttname"><a href="classvoro_1_1voronoicell.html">voro::voronoicell</a></div><div class="ttdoc">Extension of the voronoicell_base class to represent a Voronoi cell without neighbor information...</div><div class="ttdef"><b>Definition:</b> <a href="cell_8hh_source.html#l00300">cell.hh:300</a></div></div>
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<div class="ttc" id="classvoro_1_1voro__compute_html"><div class="ttname"><a href="classvoro_1_1voro__compute.html">voro::voro_compute</a></div><div class="ttdoc">Template for carrying out Voronoi cell computations. </div><div class="ttdef"><b>Definition:</b> <a href="v__compute_8hh_source.html#l00039">v_compute.hh:39</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_a21a12c0ed7e67de10360cd3af8a5928f"><div class="ttname"><a href="classvoro_1_1container__periodic.html#a21a12c0ed7e67de10360cd3af8a5928f">voro::container_periodic::draw_particles</a></div><div class="ttdeci">void draw_particles(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00263">container_prd.hh:263</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_a4f2b088d20b479b62a3dcdfa42d62526"><div class="ttname"><a href="classvoro_1_1container__periodic.html#a4f2b088d20b479b62a3dcdfa42d62526">voro::container_periodic::draw_cells_gnuplot</a></div><div class="ttdeci">void draw_cells_gnuplot(const char *filename)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00321">container_prd.hh:321</a></div></div>
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<div class="ttc" id="classvoro_1_1c__loop__all__periodic_html"><div class="ttname"><a href="classvoro_1_1c__loop__all__periodic.html">voro::c_loop_all_periodic</a></div><div class="ttdoc">A class for looping over all particles in a container_periodic or container_periodic_poly class...</div><div class="ttdef"><b>Definition:</b> <a href="c__loops_8hh_source.html#l00325">c_loops.hh:325</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_af5cc004a3be4a1eecb037fe9f4b9e2ff"><div class="ttname"><a href="classvoro_1_1container__periodic.html#af5cc004a3be4a1eecb037fe9f4b9e2ff">voro::container_periodic::compute_cell</a></div><div class="ttdeci">bool compute_cell(v_cell &c, c_loop &vl)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00388">container_prd.hh:388</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_ab1f18c51495f684dfc4d3372f9b311da"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#ab1f18c51495f684dfc4d3372f9b311da">voro::container_periodic_base::oz</a></div><div class="ttdeci">int oz</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00062">container_prd.hh:62</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_ac5c58cd20c15b64b4fa6737b9a4bf8f9"><div class="ttname"><a href="classvoro_1_1container__periodic.html#ac5c58cd20c15b64b4fa6737b9a4bf8f9">voro::container_periodic::compute_ghost_cell</a></div><div class="ttdeci">bool compute_ghost_cell(v_cell &c, double x, double y, double z)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00413">container_prd.hh:413</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a9e622a40386d97fcb015ff4ed792ff44"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a9e622a40386d97fcb015ff4ed792ff44">voro::container_periodic_base::create_all_images</a></div><div class="ttdeci">void create_all_images()</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00543">container_prd.cc:543</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_abd0fd5314a1d1e50721d2320171064e8"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#abd0fd5314a1d1e50721d2320171064e8">voro::container_periodic_poly::compute_cell</a></div><div class="ttdeci">bool compute_cell(v_cell &c, int ijk, int q)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00620">container_prd.hh:620</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_a0f60071a597dec1065a5ab122cf72415"><div class="ttname"><a href="classvoro_1_1container__periodic.html#a0f60071a597dec1065a5ab122cf72415">voro::container_periodic::sum_cell_volumes</a></div><div class="ttdeci">double sum_cell_volumes()</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8cc_source.html#l00520">container_prd.cc:520</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a5abecf243780e08dd6cce6f5dd270c76"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a5abecf243780e08dd6cce6f5dd270c76">voro::container_periodic_base::id</a></div><div class="ttdeci">int ** id</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00067">container_prd.hh:67</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_a7279993d74b79966cfaeab40f8df5882"><div class="ttname"><a href="classvoro_1_1container__periodic.html#a7279993d74b79966cfaeab40f8df5882">voro::container_periodic::draw_particles_pov</a></div><div class="ttdeci">void draw_particles_pov(FILE *fp=stdout)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00288">container_prd.hh:288</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a4ff4effc81e7b8908cda31f0c8c5ad70"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a4ff4effc81e7b8908cda31f0c8c5ad70">voro::container_periodic_base::mem</a></div><div class="ttdeci">int * mem</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00080">container_prd.hh:80</a></div></div>
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<div class="ttc" id="classvoro_1_1particle__order_html"><div class="ttname"><a href="classvoro_1_1particle__order.html">voro::particle_order</a></div><div class="ttdoc">A class for storing ordering information when particles are added to a container. ...</div><div class="ttdef"><b>Definition:</b> <a href="c__loops_8hh_source.html#l00037">c_loops.hh:37</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a4f637efc5e56874aa9d68f44505e042c"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a4f637efc5e56874aa9d68f44505e042c">voro::container_periodic_base::frac_pos</a></div><div class="ttdeci">void frac_pos(double x, double y, double z, double ci, double cj, double ck, double &fx, double &fy, double &fz)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00152">container_prd.hh:152</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_a7086ad4c901827134b29a1bfc1b0bd3d"><div class="ttname"><a href="classvoro_1_1container__periodic.html#a7086ad4c901827134b29a1bfc1b0bd3d">voro::container_periodic::draw_particles_pov</a></div><div class="ttdeci">void draw_particles_pov(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00278">container_prd.hh:278</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__poly_html_a7f4fc079c9386a4440417a38866acfa5"><div class="ttname"><a href="classvoro_1_1container__periodic__poly.html#a7f4fc079c9386a4440417a38866acfa5">voro::container_periodic_poly::print_custom</a></div><div class="ttdeci">void print_custom(c_loop &vl, const char *format, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00583">container_prd.hh:583</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_a8ae965b9dbb02a92e8dcb0d082d625a2"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#a8ae965b9dbb02a92e8dcb0d082d625a2">voro::container_periodic_base::co</a></div><div class="ttdeci">int * co</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00074">container_prd.hh:74</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic_html_adba11c6b4f9a20b1d5e0e16b94fe7dff"><div class="ttname"><a href="classvoro_1_1container__periodic.html#adba11c6b4f9a20b1d5e0e16b94fe7dff">voro::container_periodic::draw_cells_pov</a></div><div class="ttdeci">void draw_cells_pov(c_loop &vl, FILE *fp)</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00331">container_prd.hh:331</a></div></div>
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<div class="ttc" id="classvoro_1_1radius__mono_html"><div class="ttname"><a href="classvoro_1_1radius__mono.html">voro::radius_mono</a></div><div class="ttdoc">Class containing all of the routines that are specific to computing the regular Voronoi tessellation...</div><div class="ttdef"><b>Definition:</b> <a href="rad__option_8hh_source.html#l00024">rad_option.hh:24</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html_aa143ce1ecd9093f7c1889a0481b4cbb5"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html#aa143ce1ecd9093f7c1889a0481b4cbb5">voro::container_periodic_base::oy</a></div><div class="ttdeci">int oy</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00059">container_prd.hh:59</a></div></div>
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<div class="ttc" id="classvoro_1_1container__periodic__base_html"><div class="ttname"><a href="classvoro_1_1container__periodic__base.html">voro::container_periodic_base</a></div><div class="ttdoc">Class for representing a particle system in a 3D periodic non-orthogonal periodic domain...</div><div class="ttdef"><b>Definition:</b> <a href="container__prd_8hh_source.html#l00043">container_prd.hh:43</a></div></div>
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<div class="ttc" id="classvoro_1_1voro__base_html_a8aed82f1468c9bb7e2a779ea53a22594"><div class="ttname"><a href="classvoro_1_1voro__base.html#a8aed82f1468c9bb7e2a779ea53a22594">voro::voro_base::nx</a></div><div class="ttdeci">const int nx</div><div class="ttdef"><b>Definition:</b> <a href="v__base_8hh_source.html#l00028">v_base.hh:28</a></div></div>
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