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armadillo-code/include/armadillo_bits/SpMat_meat.hpp
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conrad 8c97ea4df1 add .reset_cache()
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// Copyright 2008-2016 Conrad Sanderson (http://conradsanderson.id.au)
// Copyright 2008-2016 National ICT Australia (NICTA)
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
// ------------------------------------------------------------------------
//! \addtogroup SpMat
//! @{
/**
* Initialize a sparse matrix with size 0x0 (empty).
*/
template<typename eT>
inline
SpMat<eT>::SpMat()
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
init_cold(0,0);
}
/**
* Clean up the memory of a sparse matrix and destruct it.
*/
template<typename eT>
inline
SpMat<eT>::~SpMat()
{
arma_extra_debug_sigprint_this(this);
if(values ) { memory::release(access::rw(values)); }
if(row_indices) { memory::release(access::rw(row_indices)); }
if(col_ptrs ) { memory::release(access::rw(col_ptrs)); }
}
/**
* Constructor with size given.
*/
template<typename eT>
inline
SpMat<eT>::SpMat(const uword in_rows, const uword in_cols)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
init_cold(in_rows, in_cols);
}
template<typename eT>
inline
SpMat<eT>::SpMat(const SizeMat& s)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
init_cold(s.n_rows, s.n_cols);
}
template<typename eT>
inline
SpMat<eT>::SpMat(const arma_reserve_indicator&, const uword in_rows, const uword in_cols, const uword new_n_nonzero)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
init_cold(in_rows, in_cols, new_n_nonzero);
}
template<typename eT>
template<typename eT2>
inline
SpMat<eT>::SpMat(const arma_layout_indicator&, const SpMat<eT2>& x)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
init_cold(x.n_rows, x.n_cols, x.n_nonzero);
if(x.n_nonzero == 0) { return; }
if(x.row_indices) { arrayops::copy(access::rwp(row_indices), x.row_indices, x.n_nonzero + 1); }
if(x.col_ptrs ) { arrayops::copy(access::rwp(col_ptrs), x.col_ptrs, x.n_cols + 1); }
// NOTE: 'values' array is not initialised
}
/**
* Assemble from text.
*/
template<typename eT>
inline
SpMat<eT>::SpMat(const char* text)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
init(std::string(text));
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator=(const char* text)
{
arma_extra_debug_sigprint();
init(std::string(text));
return *this;
}
template<typename eT>
inline
SpMat<eT>::SpMat(const std::string& text)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint();
init(text);
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator=(const std::string& text)
{
arma_extra_debug_sigprint();
init(text);
return *this;
}
template<typename eT>
inline
SpMat<eT>::SpMat(const SpMat<eT>& x)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
init(x);
}
template<typename eT>
inline
SpMat<eT>::SpMat(SpMat<eT>&& in_mat)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
arma_extra_debug_sigprint(arma_str::format("this = %x in_mat = %x") % this % &in_mat);
(*this).steal_mem(in_mat);
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator=(SpMat<eT>&& in_mat)
{
arma_extra_debug_sigprint(arma_str::format("this = %x in_mat = %x") % this % &in_mat);
(*this).steal_mem(in_mat);
return *this;
}
template<typename eT>
inline
SpMat<eT>::SpMat(const MapMat<eT>& x)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
init(x);
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator=(const MapMat<eT>& x)
{
arma_extra_debug_sigprint();
init(x);
return *this;
}
//! Insert a large number of values at once.
//! locations.row[0] should be row indices, locations.row[1] should be column indices,
//! and values should be the corresponding values.
//! If sort_locations is false, then it is assumed that the locations and values
//! are already sorted in column-major ordering.
template<typename eT>
template<typename T1, typename T2>
inline
SpMat<eT>::SpMat(const Base<uword,T1>& locations_expr, const Base<eT,T2>& vals_expr, const bool sort_locations)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
const unwrap<T1> locs_tmp( locations_expr.get_ref() );
const unwrap<T2> vals_tmp( vals_expr.get_ref() );
const Mat<uword>& locs = locs_tmp.M;
const Mat<eT>& vals = vals_tmp.M;
arma_debug_check( (vals.is_vec() == false), "SpMat::SpMat(): given 'values' object must be a vector" );
arma_debug_check( (locs.n_rows != 2), "SpMat::SpMat(): locations matrix must have two rows" );
arma_debug_check( (locs.n_cols != vals.n_elem), "SpMat::SpMat(): number of locations is different than number of values" );
// If there are no elements in the list, max() will fail.
if(locs.n_cols == 0) { init_cold(0, 0); return; }
// Automatically determine size before pruning zeros.
uvec bounds = arma::max(locs, 1);
init_cold(bounds[0] + 1, bounds[1] + 1);
// Ensure that there are no zeros
const uword N_old = vals.n_elem;
uword N_new = 0;
for(uword i=0; i < N_old; ++i) { N_new += (vals[i] != eT(0)) ? uword(1) : uword(0); }
if(N_new != N_old)
{
Col<eT> filtered_vals( N_new, arma_nozeros_indicator());
Mat<uword> filtered_locs(2, N_new, arma_nozeros_indicator());
uword index = 0;
for(uword i = 0; i < N_old; ++i)
{
if(vals[i] != eT(0))
{
filtered_vals[index] = vals[i];
filtered_locs.at(0, index) = locs.at(0, i);
filtered_locs.at(1, index) = locs.at(1, i);
++index;
}
}
init_batch_std(filtered_locs, filtered_vals, sort_locations);
}
else
{
init_batch_std(locs, vals, sort_locations);
}
}
//! Insert a large number of values at once.
//! locations.row[0] should be row indices, locations.row[1] should be column indices,
//! and values should be the corresponding values.
//! If sort_locations is false, then it is assumed that the locations and values
//! are already sorted in column-major ordering.
//! In this constructor the size is explicitly given.
template<typename eT>
template<typename T1, typename T2>
inline
SpMat<eT>::SpMat(const Base<uword,T1>& locations_expr, const Base<eT,T2>& vals_expr, const uword in_n_rows, const uword in_n_cols, const bool sort_locations, const bool check_for_zeros)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
const unwrap<T1> locs_tmp( locations_expr.get_ref() );
const unwrap<T2> vals_tmp( vals_expr.get_ref() );
const Mat<uword>& locs = locs_tmp.M;
const Mat<eT>& vals = vals_tmp.M;
arma_debug_check( (vals.is_vec() == false), "SpMat::SpMat(): given 'values' object must be a vector" );
arma_debug_check( (locs.n_rows != 2), "SpMat::SpMat(): locations matrix must have two rows" );
arma_debug_check( (locs.n_cols != vals.n_elem), "SpMat::SpMat(): number of locations is different than number of values" );
init_cold(in_n_rows, in_n_cols);
// Ensure that there are no zeros, unless the user asked not to.
if(check_for_zeros)
{
const uword N_old = vals.n_elem;
uword N_new = 0;
for(uword i=0; i < N_old; ++i) { N_new += (vals[i] != eT(0)) ? uword(1) : uword(0); }
if(N_new != N_old)
{
Col<eT> filtered_vals( N_new, arma_nozeros_indicator());
Mat<uword> filtered_locs(2, N_new, arma_nozeros_indicator());
uword index = 0;
for(uword i = 0; i < N_old; ++i)
{
if(vals[i] != eT(0))
{
filtered_vals[index] = vals[i];
filtered_locs.at(0, index) = locs.at(0, i);
filtered_locs.at(1, index) = locs.at(1, i);
++index;
}
}
init_batch_std(filtered_locs, filtered_vals, sort_locations);
}
else
{
init_batch_std(locs, vals, sort_locations);
}
}
else
{
init_batch_std(locs, vals, sort_locations);
}
}
template<typename eT>
template<typename T1, typename T2>
inline
SpMat<eT>::SpMat(const bool add_values, const Base<uword,T1>& locations_expr, const Base<eT,T2>& vals_expr, const uword in_n_rows, const uword in_n_cols, const bool sort_locations, const bool check_for_zeros)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
const unwrap<T1> locs_tmp( locations_expr.get_ref() );
const unwrap<T2> vals_tmp( vals_expr.get_ref() );
const Mat<uword>& locs = locs_tmp.M;
const Mat<eT>& vals = vals_tmp.M;
arma_debug_check( (vals.is_vec() == false), "SpMat::SpMat(): given 'values' object must be a vector" );
arma_debug_check( (locs.n_rows != 2), "SpMat::SpMat(): locations matrix must have two rows" );
arma_debug_check( (locs.n_cols != vals.n_elem), "SpMat::SpMat(): number of locations is different than number of values" );
init_cold(in_n_rows, in_n_cols);
// Ensure that there are no zeros, unless the user asked not to.
if(check_for_zeros)
{
const uword N_old = vals.n_elem;
uword N_new = 0;
for(uword i=0; i < N_old; ++i) { N_new += (vals[i] != eT(0)) ? uword(1) : uword(0); }
if(N_new != N_old)
{
Col<eT> filtered_vals( N_new, arma_nozeros_indicator());
Mat<uword> filtered_locs(2, N_new, arma_nozeros_indicator());
uword index = 0;
for(uword i = 0; i < N_old; ++i)
{
if(vals[i] != eT(0))
{
filtered_vals[index] = vals[i];
filtered_locs.at(0, index) = locs.at(0, i);
filtered_locs.at(1, index) = locs.at(1, i);
++index;
}
}
add_values ? init_batch_add(filtered_locs, filtered_vals, sort_locations) : init_batch_std(filtered_locs, filtered_vals, sort_locations);
}
else
{
add_values ? init_batch_add(locs, vals, sort_locations) : init_batch_std(locs, vals, sort_locations);
}
}
else
{
add_values ? init_batch_add(locs, vals, sort_locations) : init_batch_std(locs, vals, sort_locations);
}
}
//! Insert a large number of values at once.
//! Per CSC format, rowind_expr should be row indices,
//! colptr_expr should column ptr indices locations,
//! and values should be the corresponding values.
//! In this constructor the size is explicitly given.
//! Values are assumed to be sorted, and the size
//! information is trusted
template<typename eT>
template<typename T1, typename T2, typename T3>
inline
SpMat<eT>::SpMat
(
const Base<uword,T1>& rowind_expr,
const Base<uword,T2>& colptr_expr,
const Base<eT, T3>& values_expr,
const uword in_n_rows,
const uword in_n_cols
)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
const unwrap<T1> rowind_tmp( rowind_expr.get_ref() );
const unwrap<T2> colptr_tmp( colptr_expr.get_ref() );
const unwrap<T3> vals_tmp( values_expr.get_ref() );
const Mat<uword>& rowind = rowind_tmp.M;
const Mat<uword>& colptr = colptr_tmp.M;
const Mat<eT>& vals = vals_tmp.M;
arma_debug_check( (rowind.is_vec() == false), "SpMat::SpMat(): given 'rowind' object must be a vector" );
arma_debug_check( (colptr.is_vec() == false), "SpMat::SpMat(): given 'colptr' object must be a vector" );
arma_debug_check( (vals.is_vec() == false), "SpMat::SpMat(): given 'values' object must be a vector" );
// Resize to correct number of elements (this also sets n_nonzero)
init_cold(in_n_rows, in_n_cols, vals.n_elem);
arma_debug_check( (rowind.n_elem != vals.n_elem), "SpMat::SpMat(): number of row indices is not equal to number of values" );
arma_debug_check( (colptr.n_elem != (n_cols+1) ), "SpMat::SpMat(): number of column pointers is not equal to n_cols+1" );
// copy supplied values into sparse matrix -- not checked for consistency
arrayops::copy(access::rwp(row_indices), rowind.memptr(), rowind.n_elem );
arrayops::copy(access::rwp(col_ptrs), colptr.memptr(), colptr.n_elem );
arrayops::copy(access::rwp(values), vals.memptr(), vals.n_elem );
// important: set the sentinel as well
access::rw(col_ptrs[n_cols + 1]) = std::numeric_limits<uword>::max();
// make sure no zeros are stored
remove_zeros();
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator=(const eT val)
{
arma_extra_debug_sigprint();
if(val != eT(0))
{
// Resize to 1x1 then set that to the right value.
init(1, 1, 1); // Sets col_ptrs to 0.
// Manually set element.
access::rw(values[0]) = val;
access::rw(row_indices[0]) = 0;
access::rw(col_ptrs[1]) = 1;
}
else
{
init(0, 0);
}
return *this;
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator*=(const eT val)
{
arma_extra_debug_sigprint();
if(val != eT(0))
{
sync_csc();
invalidate_cache();
const uword n_nz = n_nonzero;
eT* vals = access::rwp(values);
bool has_zero = false;
for(uword i=0; i<n_nz; ++i)
{
eT& vals_i = vals[i];
vals_i *= val;
if(vals_i == eT(0)) { has_zero = true; }
}
if(has_zero) { remove_zeros(); }
}
else
{
(*this).zeros();
}
return *this;
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator/=(const eT val)
{
arma_extra_debug_sigprint();
arma_debug_check( (val == eT(0)), "element-wise division: division by zero" );
sync_csc();
invalidate_cache();
const uword n_nz = n_nonzero;
eT* vals = access::rwp(values);
bool has_zero = false;
for(uword i=0; i<n_nz; ++i)
{
eT& vals_i = vals[i];
vals_i /= val;
if(vals_i == eT(0)) { has_zero = true; }
}
if(has_zero) { remove_zeros(); }
return *this;
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator=(const SpMat<eT>& x)
{
arma_extra_debug_sigprint();
init(x);
return *this;
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator+=(const SpMat<eT>& x)
{
arma_extra_debug_sigprint();
sync_csc();
SpMat<eT> out = (*this) + x;
steal_mem(out);
return *this;
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator-=(const SpMat<eT>& x)
{
arma_extra_debug_sigprint();
sync_csc();
SpMat<eT> out = (*this) - x;
steal_mem(out);
return *this;
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator*=(const SpMat<eT>& y)
{
arma_extra_debug_sigprint();
sync_csc();
SpMat<eT> z = (*this) * y;
steal_mem(z);
return *this;
}
// This is in-place element-wise matrix multiplication.
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator%=(const SpMat<eT>& y)
{
arma_extra_debug_sigprint();
sync_csc();
SpMat<eT> z = (*this) % y;
steal_mem(z);
return *this;
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator/=(const SpMat<eT>& x)
{
arma_extra_debug_sigprint();
// NOTE: use of this function is not advised; it is implemented only for completeness
arma_debug_assert_same_size(n_rows, n_cols, x.n_rows, x.n_cols, "element-wise division");
for(uword c = 0; c < n_cols; ++c)
for(uword r = 0; r < n_rows; ++r)
{
at(r, c) /= x.at(r, c);
}
return *this;
}
template<typename eT>
template<typename T1, typename op_type>
inline
SpMat<eT>::SpMat(const SpToDOp<T1, op_type>& expr)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
typedef typename T1::elem_type T;
// Make sure the type is compatible.
arma_type_check(( is_same_type< eT, T >::no ));
op_type::apply(*this, expr);
}
// Construct a complex matrix out of two non-complex matrices
template<typename eT>
template<typename T1, typename T2>
inline
SpMat<eT>::SpMat
(
const SpBase<typename SpMat<eT>::pod_type, T1>& A,
const SpBase<typename SpMat<eT>::pod_type, T2>& B
)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint();
typedef typename T1::elem_type T;
// Make sure eT is complex and T is not (compile-time check).
arma_type_check(( is_cx<eT>::no ));
arma_type_check(( is_cx< T>::yes ));
// Compile-time abort if types are not compatible.
arma_type_check(( is_same_type< std::complex<T>, eT >::no ));
const unwrap_spmat<T1> tmp1(A.get_ref());
const unwrap_spmat<T2> tmp2(B.get_ref());
const SpMat<T>& X = tmp1.M;
const SpMat<T>& Y = tmp2.M;
arma_debug_assert_same_size(X.n_rows, X.n_cols, Y.n_rows, Y.n_cols, "SpMat()");
const uword l_n_rows = X.n_rows;
const uword l_n_cols = X.n_cols;
// Set size of matrix correctly.
init_cold(l_n_rows, l_n_cols, n_unique(X, Y, op_n_unique_count()));
// Now on a second iteration, fill it.
typename SpMat<T>::const_iterator x_it = X.begin();
typename SpMat<T>::const_iterator x_end = X.end();
typename SpMat<T>::const_iterator y_it = Y.begin();
typename SpMat<T>::const_iterator y_end = Y.end();
uword cur_pos = 0;
while((x_it != x_end) || (y_it != y_end))
{
if(x_it == y_it) // if we are at the same place
{
access::rw(values[cur_pos]) = std::complex<T>((T) *x_it, (T) *y_it);
access::rw(row_indices[cur_pos]) = x_it.row();
++access::rw(col_ptrs[x_it.col() + 1]);
++x_it;
++y_it;
}
else
{
if((x_it.col() < y_it.col()) || ((x_it.col() == y_it.col()) && (x_it.row() < y_it.row()))) // if y is closer to the end
{
access::rw(values[cur_pos]) = std::complex<T>((T) *x_it, T(0));
access::rw(row_indices[cur_pos]) = x_it.row();
++access::rw(col_ptrs[x_it.col() + 1]);
++x_it;
}
else // x is closer to the end
{
access::rw(values[cur_pos]) = std::complex<T>(T(0), (T) *y_it);
access::rw(row_indices[cur_pos]) = y_it.row();
++access::rw(col_ptrs[y_it.col() + 1]);
++y_it;
}
}
++cur_pos;
}
// Now fix the column pointers; they are supposed to be a sum.
for(uword c = 1; c <= n_cols; ++c)
{
access::rw(col_ptrs[c]) += col_ptrs[c - 1];
}
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>::SpMat(const Base<eT, T1>& x)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
(*this).operator=(x);
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator=(const Base<eT, T1>& expr)
{
arma_extra_debug_sigprint();
if(is_same_type< T1, Gen<Mat<eT>, gen_zeros> >::yes)
{
const Proxy<T1> P(expr.get_ref());
(*this).zeros( P.get_n_rows(), P.get_n_cols() );
return *this;
}
if(is_same_type< T1, Gen<Mat<eT>, gen_eye> >::yes)
{
const Proxy<T1> P(expr.get_ref());
(*this).eye( P.get_n_rows(), P.get_n_cols() );
return *this;
}
const quasi_unwrap<T1> tmp(expr.get_ref());
const Mat<eT>& x = tmp.M;
const uword x_n_rows = x.n_rows;
const uword x_n_cols = x.n_cols;
const uword x_n_elem = x.n_elem;
// Count number of nonzero elements in base object.
uword n = 0;
const eT* x_mem = x.memptr();
for(uword i=0; i < x_n_elem; ++i) { n += (x_mem[i] != eT(0)) ? uword(1) : uword(0); }
init(x_n_rows, x_n_cols, n);
if(n == 0) { return *this; }
// Now the memory is resized correctly; set nonzero elements.
n = 0;
for(uword j = 0; j < x_n_cols; ++j)
for(uword i = 0; i < x_n_rows; ++i)
{
const eT val = (*x_mem); x_mem++;
if(val != eT(0))
{
access::rw(values[n]) = val;
access::rw(row_indices[n]) = i;
access::rw(col_ptrs[j + 1])++;
++n;
}
}
// Sum column counts to be column pointers.
for(uword c = 1; c <= n_cols; ++c)
{
access::rw(col_ptrs[c]) += col_ptrs[c - 1];
}
return *this;
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator+=(const Base<eT, T1>& x)
{
arma_extra_debug_sigprint();
sync_csc();
return (*this).operator=( (*this) + x.get_ref() );
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator-=(const Base<eT, T1>& x)
{
arma_extra_debug_sigprint();
sync_csc();
return (*this).operator=( (*this) - x.get_ref() );
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator*=(const Base<eT, T1>& y)
{
arma_extra_debug_sigprint();
sync_csc();
const Proxy<T1> p(y.get_ref());
arma_debug_assert_mul_size(n_rows, n_cols, p.get_n_rows(), p.get_n_cols(), "matrix multiplication");
// We assume the matrix structure is such that we will end up with a sparse
// matrix. Assuming that every entry in the dense matrix is nonzero (which is
// a fairly valid assumption), each row with any nonzero elements in it (in this
// matrix) implies an entire nonzero column. Therefore, we iterate over all
// the row_indices and count the number of rows with any elements in them
// (using the quasi-linked-list idea from SYMBMM -- see spglue_times_meat.hpp).
podarray<uword> index(n_rows);
index.fill(n_rows); // Fill with invalid links.
uword last_index = n_rows + 1;
for(uword i = 0; i < n_nonzero; ++i)
{
if(index[row_indices[i]] == n_rows)
{
index[row_indices[i]] = last_index;
last_index = row_indices[i];
}
}
// Now count the number of rows which have nonzero elements.
uword nonzero_rows = 0;
while(last_index != n_rows + 1)
{
++nonzero_rows;
last_index = index[last_index];
}
SpMat<eT> z(arma_reserve_indicator(), n_rows, p.get_n_cols(), (nonzero_rows * p.get_n_cols())); // upper bound on size
// Now we have to fill all the elements using a modification of the NUMBMM algorithm.
uword cur_pos = 0;
podarray<eT> partial_sums(n_rows);
partial_sums.zeros();
for(uword lcol = 0; lcol < n_cols; ++lcol)
{
const_iterator it = begin();
const_iterator it_end = end();
while(it != it_end)
{
const eT value = (*it);
partial_sums[it.row()] += (value * p.at(it.col(), lcol));
++it;
}
// Now add all partial sums to the matrix.
for(uword i = 0; i < n_rows; ++i)
{
if(partial_sums[i] != eT(0))
{
access::rw(z.values[cur_pos]) = partial_sums[i];
access::rw(z.row_indices[cur_pos]) = i;
++access::rw(z.col_ptrs[lcol + 1]);
//printf("colptr %d now %d\n", lcol + 1, z.col_ptrs[lcol + 1]);
++cur_pos;
partial_sums[i] = 0; // Would it be faster to do this in batch later?
}
}
}
// Now fix the column pointers.
for(uword c = 1; c <= z.n_cols; ++c)
{
access::rw(z.col_ptrs[c]) += z.col_ptrs[c - 1];
}
// Resize to final correct size.
z.mem_resize(z.col_ptrs[z.n_cols]);
// Now take the memory of the temporary matrix.
steal_mem(z);
return *this;
}
/**
* Don't use this function. It's not mathematically well-defined and wastes
* cycles to trash all your data. This is dumb.
*/
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator/=(const Base<eT, T1>& x)
{
arma_extra_debug_sigprint();
sync_csc();
SpMat<eT> tmp = (*this) / x.get_ref();
steal_mem(tmp);
return *this;
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator%=(const Base<eT, T1>& x)
{
arma_extra_debug_sigprint();
SpMat<eT> tmp;
// Just call the other order (these operations are commutative)
// TODO: if there is a matrix size mismatch, the debug assert will print the matrix sizes in wrong order
spglue_schur_misc::dense_schur_sparse(tmp, x.get_ref(), (*this));
steal_mem(tmp);
return *this;
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>::SpMat(const Op<T1, op_diagmat>& expr)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
(*this).operator=(expr);
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator=(const Op<T1, op_diagmat>& expr)
{
arma_extra_debug_sigprint();
const diagmat_proxy<T1> P(expr.m);
const uword max_n_nonzero = (std::min)(P.n_rows, P.n_cols);
// resize memory to upper bound
init(P.n_rows, P.n_cols, max_n_nonzero);
uword count = 0;
for(uword i=0; i < max_n_nonzero; ++i)
{
const eT val = P[i];
if(val != eT(0))
{
access::rw(values[count]) = val;
access::rw(row_indices[count]) = i;
access::rw(col_ptrs[i + 1])++;
++count;
}
}
// fix column pointers to be cumulative
for(uword i = 1; i < n_cols + 1; ++i)
{
access::rw(col_ptrs[i]) += col_ptrs[i - 1];
}
// quick resize without reallocating memory and copying data
access::rw( n_nonzero) = count;
access::rw( values[count]) = eT(0);
access::rw(row_indices[count]) = uword(0);
return *this;
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator+=(const Op<T1, op_diagmat>& expr)
{
arma_extra_debug_sigprint();
const SpMat<eT> tmp(expr);
return (*this).operator+=(tmp);
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator-=(const Op<T1, op_diagmat>& expr)
{
arma_extra_debug_sigprint();
const SpMat<eT> tmp(expr);
return (*this).operator-=(tmp);
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator*=(const Op<T1, op_diagmat>& expr)
{
arma_extra_debug_sigprint();
const SpMat<eT> tmp(expr);
return (*this).operator*=(tmp);
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator/=(const Op<T1, op_diagmat>& expr)
{
arma_extra_debug_sigprint();
const SpMat<eT> tmp(expr);
return (*this).operator/=(tmp);
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator%=(const Op<T1, op_diagmat>& expr)
{
arma_extra_debug_sigprint();
const SpMat<eT> tmp(expr);
return (*this).operator%=(tmp);
}
/**
* Functions on subviews.
*/
template<typename eT>
inline
SpMat<eT>::SpMat(const SpSubview<eT>& X)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
(*this).operator=(X);
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator=(const SpSubview<eT>& X)
{
arma_extra_debug_sigprint();
if(X.n_nonzero == 0) { zeros(X.n_rows, X.n_cols); return *this; }
X.m.sync_csc();
const bool alias = (this == &(X.m));
if(alias)
{
SpMat<eT> tmp(X);
steal_mem(tmp);
}
else
{
init(X.n_rows, X.n_cols, X.n_nonzero);
if(X.n_rows == X.m.n_rows)
{
const uword sv_col_start = X.aux_col1;
const uword sv_col_end = X.aux_col1 + X.n_cols - 1;
typename SpMat<eT>::const_col_iterator m_it = X.m.begin_col(sv_col_start);
typename SpMat<eT>::const_col_iterator m_it_end = X.m.end_col(sv_col_end);
uword count = 0;
while(m_it != m_it_end)
{
const uword m_it_col_adjusted = m_it.col() - sv_col_start;
access::rw(row_indices[count]) = m_it.row();
access::rw(values[count]) = (*m_it);
++access::rw(col_ptrs[m_it_col_adjusted + 1]);
count++;
++m_it;
}
}
else
{
typename SpSubview<eT>::const_iterator it = X.begin();
typename SpSubview<eT>::const_iterator it_end = X.end();
while(it != it_end)
{
const uword it_pos = it.pos();
access::rw(row_indices[it_pos]) = it.row();
access::rw(values[it_pos]) = (*it);
++access::rw(col_ptrs[it.col() + 1]);
++it;
}
}
// Now sum column pointers.
for(uword c = 1; c <= n_cols; ++c)
{
access::rw(col_ptrs[c]) += col_ptrs[c - 1];
}
}
return *this;
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator+=(const SpSubview<eT>& X)
{
arma_extra_debug_sigprint();
sync_csc();
SpMat<eT> tmp = (*this) + X;
steal_mem(tmp);
return *this;
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator-=(const SpSubview<eT>& X)
{
arma_extra_debug_sigprint();
sync_csc();
SpMat<eT> tmp = (*this) - X;
steal_mem(tmp);
return *this;
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator*=(const SpSubview<eT>& y)
{
arma_extra_debug_sigprint();
sync_csc();
SpMat<eT> z = (*this) * y;
steal_mem(z);
return *this;
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator%=(const SpSubview<eT>& x)
{
arma_extra_debug_sigprint();
sync_csc();
SpMat<eT> tmp = (*this) % x;
steal_mem(tmp);
return *this;
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator/=(const SpSubview<eT>& x)
{
arma_extra_debug_sigprint();
arma_debug_assert_same_size(n_rows, n_cols, x.n_rows, x.n_cols, "element-wise division");
// There is no pretty way to do this.
for(uword elem = 0; elem < n_elem; elem++)
{
at(elem) /= x(elem);
}
return *this;
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>::SpMat(const SpSubview_col_list<eT,T1>& X)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
SpSubview_col_list<eT,T1>::extract(*this, X);
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator=(const SpSubview_col_list<eT,T1>& X)
{
arma_extra_debug_sigprint();
const bool alias = (this == &(X.m));
if(alias == false)
{
SpSubview_col_list<eT,T1>::extract(*this, X);
}
else
{
SpMat<eT> tmp(X);
steal_mem(tmp);
}
return *this;
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator+=(const SpSubview_col_list<eT,T1>& X)
{
arma_extra_debug_sigprint();
SpSubview_col_list<eT,T1>::plus_inplace(*this, X);
return *this;
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator-=(const SpSubview_col_list<eT,T1>& X)
{
arma_extra_debug_sigprint();
SpSubview_col_list<eT,T1>::minus_inplace(*this, X);
return *this;
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator*=(const SpSubview_col_list<eT,T1>& X)
{
arma_extra_debug_sigprint();
sync_csc();
SpMat<eT> z = (*this) * X;
steal_mem(z);
return *this;
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator%=(const SpSubview_col_list<eT,T1>& X)
{
arma_extra_debug_sigprint();
SpSubview_col_list<eT,T1>::schur_inplace(*this, X);
return *this;
}
template<typename eT>
template<typename T1>
inline
SpMat<eT>&
SpMat<eT>::operator/=(const SpSubview_col_list<eT,T1>& X)
{
arma_extra_debug_sigprint();
SpSubview_col_list<eT,T1>::div_inplace(*this, X);
return *this;
}
template<typename eT>
inline
SpMat<eT>::SpMat(const spdiagview<eT>& X)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
spdiagview<eT>::extract(*this, X);
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator=(const spdiagview<eT>& X)
{
arma_extra_debug_sigprint();
spdiagview<eT>::extract(*this, X);
return *this;
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator+=(const spdiagview<eT>& X)
{
arma_extra_debug_sigprint();
const SpMat<eT> tmp(X);
return (*this).operator+=(tmp);
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator-=(const spdiagview<eT>& X)
{
arma_extra_debug_sigprint();
const SpMat<eT> tmp(X);
return (*this).operator-=(tmp);
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator*=(const spdiagview<eT>& X)
{
arma_extra_debug_sigprint();
const SpMat<eT> tmp(X);
return (*this).operator*=(tmp);
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator%=(const spdiagview<eT>& X)
{
arma_extra_debug_sigprint();
const SpMat<eT> tmp(X);
return (*this).operator%=(tmp);
}
template<typename eT>
inline
SpMat<eT>&
SpMat<eT>::operator/=(const spdiagview<eT>& X)
{
arma_extra_debug_sigprint();
const SpMat<eT> tmp(X);
return (*this).operator/=(tmp);
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>::SpMat(const SpOp<T1, spop_type>& X)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr) // set in application of sparse operation
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
spop_type::apply(*this, X);
sync_csc(); // in case apply() used element accessors
invalidate_cache(); // in case apply() modified the CSC representation
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>&
SpMat<eT>::operator=(const SpOp<T1, spop_type>& X)
{
arma_extra_debug_sigprint();
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
spop_type::apply(*this, X);
sync_csc(); // in case apply() used element accessors
invalidate_cache(); // in case apply() modified the CSC representation
return *this;
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>&
SpMat<eT>::operator+=(const SpOp<T1, spop_type>& X)
{
arma_extra_debug_sigprint();
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
sync_csc();
const SpMat<eT> m(X);
return (*this).operator+=(m);
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>&
SpMat<eT>::operator-=(const SpOp<T1, spop_type>& X)
{
arma_extra_debug_sigprint();
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
sync_csc();
const SpMat<eT> m(X);
return (*this).operator-=(m);
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>&
SpMat<eT>::operator*=(const SpOp<T1, spop_type>& X)
{
arma_extra_debug_sigprint();
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
sync_csc();
const SpMat<eT> m(X);
return (*this).operator*=(m);
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>&
SpMat<eT>::operator%=(const SpOp<T1, spop_type>& X)
{
arma_extra_debug_sigprint();
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
sync_csc();
const SpMat<eT> m(X);
return (*this).operator%=(m);
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>&
SpMat<eT>::operator/=(const SpOp<T1, spop_type>& X)
{
arma_extra_debug_sigprint();
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
sync_csc();
const SpMat<eT> m(X);
return (*this).operator/=(m);
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>::SpMat(const SpGlue<T1, T2, spglue_type>& X)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
spglue_type::apply(*this, X);
sync_csc(); // in case apply() used element accessors
invalidate_cache(); // in case apply() modified the CSC representation
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>&
SpMat<eT>::operator=(const SpGlue<T1, T2, spglue_type>& X)
{
arma_extra_debug_sigprint();
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
spglue_type::apply(*this, X);
sync_csc(); // in case apply() used element accessors
invalidate_cache(); // in case apply() modified the CSC representation
return *this;
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>&
SpMat<eT>::operator+=(const SpGlue<T1, T2, spglue_type>& X)
{
arma_extra_debug_sigprint();
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
sync_csc();
const SpMat<eT> m(X);
return (*this).operator+=(m);
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>&
SpMat<eT>::operator-=(const SpGlue<T1, T2, spglue_type>& X)
{
arma_extra_debug_sigprint();
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
sync_csc();
const SpMat<eT> m(X);
return (*this).operator-=(m);
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>&
SpMat<eT>::operator*=(const SpGlue<T1, T2, spglue_type>& X)
{
arma_extra_debug_sigprint();
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
sync_csc();
const SpMat<eT> m(X);
return (*this).operator*=(m);
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>&
SpMat<eT>::operator%=(const SpGlue<T1, T2, spglue_type>& X)
{
arma_extra_debug_sigprint();
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
sync_csc();
const SpMat<eT> m(X);
return (*this).operator%=(m);
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>&
SpMat<eT>::operator/=(const SpGlue<T1, T2, spglue_type>& X)
{
arma_extra_debug_sigprint();
arma_type_check(( is_same_type< eT, typename T1::elem_type >::no ));
sync_csc();
const SpMat<eT> m(X);
return (*this).operator/=(m);
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>::SpMat(const mtSpOp<eT, T1, spop_type>& X)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
spop_type::apply(*this, X);
sync_csc(); // in case apply() used element accessors
invalidate_cache(); // in case apply() modified the CSC representation
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>&
SpMat<eT>::operator=(const mtSpOp<eT, T1, spop_type>& X)
{
arma_extra_debug_sigprint();
spop_type::apply(*this, X);
sync_csc(); // in case apply() used element accessors
invalidate_cache(); // in case apply() modified the CSC representation
return *this;
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>&
SpMat<eT>::operator+=(const mtSpOp<eT, T1, spop_type>& X)
{
arma_extra_debug_sigprint();
sync_csc();
const SpMat<eT> m(X);
return (*this).operator+=(m);
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>&
SpMat<eT>::operator-=(const mtSpOp<eT, T1, spop_type>& X)
{
arma_extra_debug_sigprint();
sync_csc();
const SpMat<eT> m(X);
return (*this).operator-=(m);
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>&
SpMat<eT>::operator*=(const mtSpOp<eT, T1, spop_type>& X)
{
arma_extra_debug_sigprint();
sync_csc();
const SpMat<eT> m(X);
return (*this).operator*=(m);
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>&
SpMat<eT>::operator%=(const mtSpOp<eT, T1, spop_type>& X)
{
arma_extra_debug_sigprint();
sync_csc();
const SpMat<eT> m(X);
return (*this).operator%=(m);
}
template<typename eT>
template<typename T1, typename spop_type>
inline
SpMat<eT>&
SpMat<eT>::operator/=(const mtSpOp<eT, T1, spop_type>& X)
{
arma_extra_debug_sigprint();
sync_csc();
const SpMat<eT> m(X);
return (*this).operator/=(m);
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>::SpMat(const mtSpGlue<eT, T1, T2, spglue_type>& X)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(0)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
spglue_type::apply(*this, X);
sync_csc(); // in case apply() used element accessors
invalidate_cache(); // in case apply() modified the CSC representation
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>&
SpMat<eT>::operator=(const mtSpGlue<eT, T1, T2, spglue_type>& X)
{
arma_extra_debug_sigprint();
spglue_type::apply(*this, X);
sync_csc(); // in case apply() used element accessors
invalidate_cache(); // in case apply() modified the CSC representation
return *this;
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>&
SpMat<eT>::operator+=(const mtSpGlue<eT, T1, T2, spglue_type>& X)
{
arma_extra_debug_sigprint();
sync_csc();
const SpMat<eT> m(X);
return (*this).operator+=(m);
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>&
SpMat<eT>::operator-=(const mtSpGlue<eT, T1, T2, spglue_type>& X)
{
arma_extra_debug_sigprint();
sync_csc();
const SpMat<eT> m(X);
return (*this).operator-=(m);
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>&
SpMat<eT>::operator*=(const mtSpGlue<eT, T1, T2, spglue_type>& X)
{
arma_extra_debug_sigprint();
sync_csc();
const SpMat<eT> m(X);
return (*this).operator*=(m);
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>&
SpMat<eT>::operator%=(const mtSpGlue<eT, T1, T2, spglue_type>& X)
{
arma_extra_debug_sigprint();
sync_csc();
const SpMat<eT> m(X);
return (*this).operator%=(m);
}
template<typename eT>
template<typename T1, typename T2, typename spglue_type>
inline
SpMat<eT>&
SpMat<eT>::operator/=(const mtSpGlue<eT, T1, T2, spglue_type>& X)
{
arma_extra_debug_sigprint();
sync_csc();
const SpMat<eT> m(X);
return (*this).operator/=(m);
}
template<typename eT>
arma_inline
SpSubview_row<eT>
SpMat<eT>::row(const uword row_num)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds(row_num >= n_rows, "SpMat::row(): out of bounds");
return SpSubview_row<eT>(*this, row_num);
}
template<typename eT>
arma_inline
const SpSubview_row<eT>
SpMat<eT>::row(const uword row_num) const
{
arma_extra_debug_sigprint();
arma_debug_check_bounds(row_num >= n_rows, "SpMat::row(): out of bounds");
return SpSubview_row<eT>(*this, row_num);
}
template<typename eT>
inline
SpSubview_row<eT>
SpMat<eT>::operator()(const uword row_num, const span& col_span)
{
arma_extra_debug_sigprint();
const bool col_all = col_span.whole;
const uword local_n_cols = n_cols;
const uword in_col1 = col_all ? 0 : col_span.a;
const uword in_col2 = col_span.b;
const uword submat_n_cols = col_all ? local_n_cols : in_col2 - in_col1 + 1;
arma_debug_check_bounds
(
(row_num >= n_rows)
||
( col_all ? false : ((in_col1 > in_col2) || (in_col2 >= local_n_cols)) )
,
"SpMat::operator(): indices out of bounds or incorrectly used"
);
return SpSubview_row<eT>(*this, row_num, in_col1, submat_n_cols);
}
template<typename eT>
inline
const SpSubview_row<eT>
SpMat<eT>::operator()(const uword row_num, const span& col_span) const
{
arma_extra_debug_sigprint();
const bool col_all = col_span.whole;
const uword local_n_cols = n_cols;
const uword in_col1 = col_all ? 0 : col_span.a;
const uword in_col2 = col_span.b;
const uword submat_n_cols = col_all ? local_n_cols : in_col2 - in_col1 + 1;
arma_debug_check_bounds
(
(row_num >= n_rows)
||
( col_all ? false : ((in_col1 > in_col2) || (in_col2 >= local_n_cols)) )
,
"SpMat::operator(): indices out of bounds or incorrectly used"
);
return SpSubview_row<eT>(*this, row_num, in_col1, submat_n_cols);
}
template<typename eT>
arma_inline
SpSubview_col<eT>
SpMat<eT>::col(const uword col_num)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds(col_num >= n_cols, "SpMat::col(): out of bounds");
return SpSubview_col<eT>(*this, col_num);
}
template<typename eT>
arma_inline
const SpSubview_col<eT>
SpMat<eT>::col(const uword col_num) const
{
arma_extra_debug_sigprint();
arma_debug_check_bounds(col_num >= n_cols, "SpMat::col(): out of bounds");
return SpSubview_col<eT>(*this, col_num);
}
template<typename eT>
inline
SpSubview_col<eT>
SpMat<eT>::operator()(const span& row_span, const uword col_num)
{
arma_extra_debug_sigprint();
const bool row_all = row_span.whole;
const uword local_n_rows = n_rows;
const uword in_row1 = row_all ? 0 : row_span.a;
const uword in_row2 = row_span.b;
const uword submat_n_rows = row_all ? local_n_rows : in_row2 - in_row1 + 1;
arma_debug_check_bounds
(
(col_num >= n_cols)
||
( row_all ? false : ((in_row1 > in_row2) || (in_row2 >= local_n_rows)) )
,
"SpMat::operator(): indices out of bounds or incorrectly used"
);
return SpSubview_col<eT>(*this, col_num, in_row1, submat_n_rows);
}
template<typename eT>
inline
const SpSubview_col<eT>
SpMat<eT>::operator()(const span& row_span, const uword col_num) const
{
arma_extra_debug_sigprint();
const bool row_all = row_span.whole;
const uword local_n_rows = n_rows;
const uword in_row1 = row_all ? 0 : row_span.a;
const uword in_row2 = row_span.b;
const uword submat_n_rows = row_all ? local_n_rows : in_row2 - in_row1 + 1;
arma_debug_check_bounds
(
(col_num >= n_cols)
||
( row_all ? false : ((in_row1 > in_row2) || (in_row2 >= local_n_rows)) )
,
"SpMat::operator(): indices out of bounds or incorrectly used"
);
return SpSubview_col<eT>(*this, col_num, in_row1, submat_n_rows);
}
template<typename eT>
arma_inline
SpSubview<eT>
SpMat<eT>::rows(const uword in_row1, const uword in_row2)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds
(
(in_row1 > in_row2) || (in_row2 >= n_rows),
"SpMat::rows(): indices out of bounds or incorrectly used"
);
const uword subview_n_rows = in_row2 - in_row1 + 1;
return SpSubview<eT>(*this, in_row1, 0, subview_n_rows, n_cols);
}
template<typename eT>
arma_inline
const SpSubview<eT>
SpMat<eT>::rows(const uword in_row1, const uword in_row2) const
{
arma_extra_debug_sigprint();
arma_debug_check_bounds
(
(in_row1 > in_row2) || (in_row2 >= n_rows),
"SpMat::rows(): indices out of bounds or incorrectly used"
);
const uword subview_n_rows = in_row2 - in_row1 + 1;
return SpSubview<eT>(*this, in_row1, 0, subview_n_rows, n_cols);
}
template<typename eT>
arma_inline
SpSubview<eT>
SpMat<eT>::cols(const uword in_col1, const uword in_col2)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds
(
(in_col1 > in_col2) || (in_col2 >= n_cols),
"SpMat::cols(): indices out of bounds or incorrectly used"
);
const uword subview_n_cols = in_col2 - in_col1 + 1;
return SpSubview<eT>(*this, 0, in_col1, n_rows, subview_n_cols);
}
template<typename eT>
arma_inline
const SpSubview<eT>
SpMat<eT>::cols(const uword in_col1, const uword in_col2) const
{
arma_extra_debug_sigprint();
arma_debug_check_bounds
(
(in_col1 > in_col2) || (in_col2 >= n_cols),
"SpMat::cols(): indices out of bounds or incorrectly used"
);
const uword subview_n_cols = in_col2 - in_col1 + 1;
return SpSubview<eT>(*this, 0, in_col1, n_rows, subview_n_cols);
}
template<typename eT>
arma_inline
SpSubview<eT>
SpMat<eT>::submat(const uword in_row1, const uword in_col1, const uword in_row2, const uword in_col2)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds
(
(in_row1 > in_row2) || (in_col1 > in_col2) || (in_row2 >= n_rows) || (in_col2 >= n_cols),
"SpMat::submat(): indices out of bounds or incorrectly used"
);
const uword subview_n_rows = in_row2 - in_row1 + 1;
const uword subview_n_cols = in_col2 - in_col1 + 1;
return SpSubview<eT>(*this, in_row1, in_col1, subview_n_rows, subview_n_cols);
}
template<typename eT>
arma_inline
const SpSubview<eT>
SpMat<eT>::submat(const uword in_row1, const uword in_col1, const uword in_row2, const uword in_col2) const
{
arma_extra_debug_sigprint();
arma_debug_check_bounds
(
(in_row1 > in_row2) || (in_col1 > in_col2) || (in_row2 >= n_rows) || (in_col2 >= n_cols),
"SpMat::submat(): indices out of bounds or incorrectly used"
);
const uword subview_n_rows = in_row2 - in_row1 + 1;
const uword subview_n_cols = in_col2 - in_col1 + 1;
return SpSubview<eT>(*this, in_row1, in_col1, subview_n_rows, subview_n_cols);
}
template<typename eT>
arma_inline
SpSubview<eT>
SpMat<eT>::submat(const uword in_row1, const uword in_col1, const SizeMat& s)
{
arma_extra_debug_sigprint();
const uword l_n_rows = n_rows;
const uword l_n_cols = n_cols;
const uword s_n_rows = s.n_rows;
const uword s_n_cols = s.n_cols;
arma_debug_check_bounds
(
((in_row1 >= l_n_rows) || (in_col1 >= l_n_cols) || ((in_row1 + s_n_rows) > l_n_rows) || ((in_col1 + s_n_cols) > l_n_cols)),
"SpMat::submat(): indices or size out of bounds"
);
return SpSubview<eT>(*this, in_row1, in_col1, s_n_rows, s_n_cols);
}
template<typename eT>
arma_inline
const SpSubview<eT>
SpMat<eT>::submat(const uword in_row1, const uword in_col1, const SizeMat& s) const
{
arma_extra_debug_sigprint();
const uword l_n_rows = n_rows;
const uword l_n_cols = n_cols;
const uword s_n_rows = s.n_rows;
const uword s_n_cols = s.n_cols;
arma_debug_check_bounds
(
((in_row1 >= l_n_rows) || (in_col1 >= l_n_cols) || ((in_row1 + s_n_rows) > l_n_rows) || ((in_col1 + s_n_cols) > l_n_cols)),
"SpMat::submat(): indices or size out of bounds"
);
return SpSubview<eT>(*this, in_row1, in_col1, s_n_rows, s_n_cols);
}
template<typename eT>
inline
SpSubview<eT>
SpMat<eT>::submat(const span& row_span, const span& col_span)
{
arma_extra_debug_sigprint();
const bool row_all = row_span.whole;
const bool col_all = col_span.whole;
const uword local_n_rows = n_rows;
const uword local_n_cols = n_cols;
const uword in_row1 = row_all ? 0 : row_span.a;
const uword in_row2 = row_span.b;
const uword submat_n_rows = row_all ? local_n_rows : in_row2 - in_row1 + 1;
const uword in_col1 = col_all ? 0 : col_span.a;
const uword in_col2 = col_span.b;
const uword submat_n_cols = col_all ? local_n_cols : in_col2 - in_col1 + 1;
arma_debug_check_bounds
(
( row_all ? false : ((in_row1 > in_row2) || (in_row2 >= local_n_rows)) )
||
( col_all ? false : ((in_col1 > in_col2) || (in_col2 >= local_n_cols)) )
,
"SpMat::submat(): indices out of bounds or incorrectly used"
);
return SpSubview<eT>(*this, in_row1, in_col1, submat_n_rows, submat_n_cols);
}
template<typename eT>
inline
const SpSubview<eT>
SpMat<eT>::submat(const span& row_span, const span& col_span) const
{
arma_extra_debug_sigprint();
const bool row_all = row_span.whole;
const bool col_all = col_span.whole;
const uword local_n_rows = n_rows;
const uword local_n_cols = n_cols;
const uword in_row1 = row_all ? 0 : row_span.a;
const uword in_row2 = row_span.b;
const uword submat_n_rows = row_all ? local_n_rows : in_row2 - in_row1 + 1;
const uword in_col1 = col_all ? 0 : col_span.a;
const uword in_col2 = col_span.b;
const uword submat_n_cols = col_all ? local_n_cols : in_col2 - in_col1 + 1;
arma_debug_check_bounds
(
( row_all ? false : ((in_row1 > in_row2) || (in_row2 >= local_n_rows)) )
||
( col_all ? false : ((in_col1 > in_col2) || (in_col2 >= local_n_cols)) )
,
"SpMat::submat(): indices out of bounds or incorrectly used"
);
return SpSubview<eT>(*this, in_row1, in_col1, submat_n_rows, submat_n_cols);
}
template<typename eT>
inline
SpSubview<eT>
SpMat<eT>::operator()(const span& row_span, const span& col_span)
{
arma_extra_debug_sigprint();
return submat(row_span, col_span);
}
template<typename eT>
inline
const SpSubview<eT>
SpMat<eT>::operator()(const span& row_span, const span& col_span) const
{
arma_extra_debug_sigprint();
return submat(row_span, col_span);
}
template<typename eT>
arma_inline
SpSubview<eT>
SpMat<eT>::operator()(const uword in_row1, const uword in_col1, const SizeMat& s)
{
arma_extra_debug_sigprint();
return (*this).submat(in_row1, in_col1, s);
}
template<typename eT>
arma_inline
const SpSubview<eT>
SpMat<eT>::operator()(const uword in_row1, const uword in_col1, const SizeMat& s) const
{
arma_extra_debug_sigprint();
return (*this).submat(in_row1, in_col1, s);
}
template<typename eT>
inline
SpSubview<eT>
SpMat<eT>::head_rows(const uword N)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds( (N > n_rows), "SpMat::head_rows(): size out of bounds" );
return SpSubview<eT>(*this, 0, 0, N, n_cols);
}
template<typename eT>
inline
const SpSubview<eT>
SpMat<eT>::head_rows(const uword N) const
{
arma_extra_debug_sigprint();
arma_debug_check_bounds( (N > n_rows), "SpMat::head_rows(): size out of bounds" );
return SpSubview<eT>(*this, 0, 0, N, n_cols);
}
template<typename eT>
inline
SpSubview<eT>
SpMat<eT>::tail_rows(const uword N)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds( (N > n_rows), "SpMat::tail_rows(): size out of bounds" );
const uword start_row = n_rows - N;
return SpSubview<eT>(*this, start_row, 0, N, n_cols);
}
template<typename eT>
inline
const SpSubview<eT>
SpMat<eT>::tail_rows(const uword N) const
{
arma_extra_debug_sigprint();
arma_debug_check_bounds( (N > n_rows), "SpMat::tail_rows(): size out of bounds" );
const uword start_row = n_rows - N;
return SpSubview<eT>(*this, start_row, 0, N, n_cols);
}
template<typename eT>
inline
SpSubview<eT>
SpMat<eT>::head_cols(const uword N)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds( (N > n_cols), "SpMat::head_cols(): size out of bounds" );
return SpSubview<eT>(*this, 0, 0, n_rows, N);
}
template<typename eT>
inline
const SpSubview<eT>
SpMat<eT>::head_cols(const uword N) const
{
arma_extra_debug_sigprint();
arma_debug_check_bounds( (N > n_cols), "SpMat::head_cols(): size out of bounds" );
return SpSubview<eT>(*this, 0, 0, n_rows, N);
}
template<typename eT>
inline
SpSubview<eT>
SpMat<eT>::tail_cols(const uword N)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds( (N > n_cols), "SpMat::tail_cols(): size out of bounds" );
const uword start_col = n_cols - N;
return SpSubview<eT>(*this, 0, start_col, n_rows, N);
}
template<typename eT>
inline
const SpSubview<eT>
SpMat<eT>::tail_cols(const uword N) const
{
arma_extra_debug_sigprint();
arma_debug_check_bounds( (N > n_cols), "SpMat::tail_cols(): size out of bounds" );
const uword start_col = n_cols - N;
return SpSubview<eT>(*this, 0, start_col, n_rows, N);
}
template<typename eT>
template<typename T1>
arma_inline
SpSubview_col_list<eT, T1>
SpMat<eT>::cols(const Base<uword, T1>& indices)
{
arma_extra_debug_sigprint();
return SpSubview_col_list<eT, T1>(*this, indices);
}
template<typename eT>
template<typename T1>
arma_inline
const SpSubview_col_list<eT, T1>
SpMat<eT>::cols(const Base<uword, T1>& indices) const
{
arma_extra_debug_sigprint();
return SpSubview_col_list<eT, T1>(*this, indices);
}
//! creation of spdiagview (diagonal)
template<typename eT>
inline
spdiagview<eT>
SpMat<eT>::diag(const sword in_id)
{
arma_extra_debug_sigprint();
const uword row_offset = (in_id < 0) ? uword(-in_id) : 0;
const uword col_offset = (in_id > 0) ? uword( in_id) : 0;
arma_debug_check_bounds
(
((row_offset > 0) && (row_offset >= n_rows)) || ((col_offset > 0) && (col_offset >= n_cols)),
"SpMat::diag(): requested diagonal out of bounds"
);
const uword len = (std::min)(n_rows - row_offset, n_cols - col_offset);
return spdiagview<eT>(*this, row_offset, col_offset, len);
}
//! creation of spdiagview (diagonal)
template<typename eT>
inline
const spdiagview<eT>
SpMat<eT>::diag(const sword in_id) const
{
arma_extra_debug_sigprint();
const uword row_offset = uword( (in_id < 0) ? -in_id : 0 );
const uword col_offset = uword( (in_id > 0) ? in_id : 0 );
arma_debug_check_bounds
(
((row_offset > 0) && (row_offset >= n_rows)) || ((col_offset > 0) && (col_offset >= n_cols)),
"SpMat::diag(): requested diagonal out of bounds"
);
const uword len = (std::min)(n_rows - row_offset, n_cols - col_offset);
return spdiagview<eT>(*this, row_offset, col_offset, len);
}
template<typename eT>
inline
void
SpMat<eT>::swap_rows(const uword in_row1, const uword in_row2)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds( ((in_row1 >= n_rows) || (in_row2 >= n_rows)), "SpMat::swap_rows(): out of bounds" );
if(in_row1 == in_row2) { return; }
sync_csc();
invalidate_cache();
// The easier way to do this, instead of collecting all the elements in one row and then swapping with the other, will be
// to iterate over each column of the matrix (since we store in column-major format) and then swap the two elements in the two rows at that time.
// We will try to avoid using the at() call since it is expensive, instead preferring to use an iterator to track our position.
uword col1 = (in_row1 < in_row2) ? in_row1 : in_row2;
uword col2 = (in_row1 < in_row2) ? in_row2 : in_row1;
for(uword lcol = 0; lcol < n_cols; lcol++)
{
// If there is nothing in this column we can ignore it.
if(col_ptrs[lcol] == col_ptrs[lcol + 1])
{
continue;
}
// These will represent the positions of the items themselves.
uword loc1 = n_nonzero + 1;
uword loc2 = n_nonzero + 1;
for(uword search_pos = col_ptrs[lcol]; search_pos < col_ptrs[lcol + 1]; search_pos++)
{
if(row_indices[search_pos] == col1)
{
loc1 = search_pos;
}
if(row_indices[search_pos] == col2)
{
loc2 = search_pos;
break; // No need to look any further.
}
}
// There are four cases: we found both elements; we found one element (loc1); we found one element (loc2); we found zero elements.
// If we found zero elements no work needs to be done and we can continue to the next column.
if((loc1 != (n_nonzero + 1)) && (loc2 != (n_nonzero + 1)))
{
// This is an easy case: just swap the values. No index modifying necessary.
eT tmp = values[loc1];
access::rw(values[loc1]) = values[loc2];
access::rw(values[loc2]) = tmp;
}
else if(loc1 != (n_nonzero + 1)) // We only found loc1 and not loc2.
{
// We need to find the correct place to move our value to. It will be forward (not backwards) because in_row2 > in_row1.
// Each iteration of the loop swaps the current value (loc1) with (loc1 + 1); in this manner we move our value down to where it should be.
while(((loc1 + 1) < col_ptrs[lcol + 1]) && (row_indices[loc1 + 1] < in_row2))
{
// Swap both the values and the indices. The column should not change.
eT tmp = values[loc1];
access::rw(values[loc1]) = values[loc1 + 1];
access::rw(values[loc1 + 1]) = tmp;
uword tmp_index = row_indices[loc1];
access::rw(row_indices[loc1]) = row_indices[loc1 + 1];
access::rw(row_indices[loc1 + 1]) = tmp_index;
loc1++; // And increment the counter.
}
// Now set the row index correctly.
access::rw(row_indices[loc1]) = in_row2;
}
else if(loc2 != (n_nonzero + 1))
{
// We need to find the correct place to move our value to. It will be backwards (not forwards) because in_row1 < in_row2.
// Each iteration of the loop swaps the current value (loc2) with (loc2 - 1); in this manner we move our value up to where it should be.
while(((loc2 - 1) >= col_ptrs[lcol]) && (row_indices[loc2 - 1] > in_row1))
{
// Swap both the values and the indices. The column should not change.
eT tmp = values[loc2];
access::rw(values[loc2]) = values[loc2 - 1];
access::rw(values[loc2 - 1]) = tmp;
uword tmp_index = row_indices[loc2];
access::rw(row_indices[loc2]) = row_indices[loc2 - 1];
access::rw(row_indices[loc2 - 1]) = tmp_index;
loc2--; // And decrement the counter.
}
// Now set the row index correctly.
access::rw(row_indices[loc2]) = in_row1;
}
/* else: no need to swap anything; both values are zero */
}
}
template<typename eT>
inline
void
SpMat<eT>::swap_cols(const uword in_col1, const uword in_col2)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds( ((in_col1 >= n_cols) || (in_col2 >= n_cols)), "SpMat::swap_cols(): out of bounds" );
if(in_col1 == in_col2) { return; }
// TODO: this is a rudimentary implementation
SpMat<eT> tmp = (*this);
tmp.col(in_col1) = (*this).col(in_col2);
tmp.col(in_col2) = (*this).col(in_col1);
steal_mem(tmp);
// for(uword lrow = 0; lrow < n_rows; ++lrow)
// {
// const eT tmp = at(lrow, in_col1);
// at(lrow, in_col1) = eT( at(lrow, in_col2) );
// at(lrow, in_col2) = tmp;
// }
}
template<typename eT>
inline
void
SpMat<eT>::shed_row(const uword row_num)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds(row_num >= n_rows, "SpMat::shed_row(): out of bounds");
shed_rows (row_num, row_num);
}
template<typename eT>
inline
void
SpMat<eT>::shed_col(const uword col_num)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds(col_num >= n_cols, "SpMat::shed_col(): out of bounds");
shed_cols(col_num, col_num);
}
template<typename eT>
inline
void
SpMat<eT>::shed_rows(const uword in_row1, const uword in_row2)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds
(
(in_row1 > in_row2) || (in_row2 >= n_rows),
"SpMat::shed_rows(): indices out of bounds or incorectly used"
);
sync_csc();
SpMat<eT> newmat(n_rows - (in_row2 - in_row1 + 1), n_cols);
// First, count the number of elements we will be removing.
uword removing = 0;
for(uword i = 0; i < n_nonzero; ++i)
{
const uword lrow = row_indices[i];
if(lrow >= in_row1 && lrow <= in_row2)
{
++removing;
}
}
// Obtain counts of the number of points in each column and store them as the
// (invalid) column pointers of the new matrix.
for(uword i = 1; i < n_cols + 1; ++i)
{
access::rw(newmat.col_ptrs[i]) = col_ptrs[i] - col_ptrs[i - 1];
}
// Now initialize memory for the new matrix.
newmat.mem_resize(n_nonzero - removing);
// Now, copy over the elements.
// i is the index in the old matrix; j is the index in the new matrix.
const_iterator it = begin();
const_iterator it_end = end();
uword j = 0; // The index in the new matrix.
while(it != it_end)
{
const uword lrow = it.row();
const uword lcol = it.col();
if(lrow >= in_row1 && lrow <= in_row2)
{
// This element is being removed. Subtract it from the column counts.
--access::rw(newmat.col_ptrs[lcol + 1]);
}
else
{
// This element is being kept. We may need to map the row index,
// if it is past the section of rows we are removing.
if(lrow > in_row2)
{
access::rw(newmat.row_indices[j]) = lrow - (in_row2 - in_row1 + 1);
}
else
{
access::rw(newmat.row_indices[j]) = lrow;
}
access::rw(newmat.values[j]) = (*it);
++j; // Increment index in new matrix.
}
++it;
}
// Finally, sum the column counts so they are correct column pointers.
for(uword i = 1; i < n_cols + 1; ++i)
{
access::rw(newmat.col_ptrs[i]) += newmat.col_ptrs[i - 1];
}
// Now steal the memory of the new matrix.
steal_mem(newmat);
}
template<typename eT>
inline
void
SpMat<eT>::shed_cols(const uword in_col1, const uword in_col2)
{
arma_extra_debug_sigprint();
arma_debug_check_bounds
(
(in_col1 > in_col2) || (in_col2 >= n_cols),
"SpMat::shed_cols(): indices out of bounds or incorrectly used"
);
sync_csc();
invalidate_cache();
// First we find the locations in values and row_indices for the column entries.
uword col_beg = col_ptrs[in_col1];
uword col_end = col_ptrs[in_col2 + 1];
// Then we find the number of entries in the column.
uword diff = col_end - col_beg;
if(diff > 0)
{
eT* new_values = memory::acquire<eT> (n_nonzero - diff);
uword* new_row_indices = memory::acquire<uword>(n_nonzero - diff);
// Copy first part.
if(col_beg != 0)
{
arrayops::copy(new_values, values, col_beg);
arrayops::copy(new_row_indices, row_indices, col_beg);
}
// Copy second part.
if(col_end != n_nonzero)
{
arrayops::copy(new_values + col_beg, values + col_end, n_nonzero - col_end);
arrayops::copy(new_row_indices + col_beg, row_indices + col_end, n_nonzero - col_end);
}
if(values) { memory::release(access::rw(values)); }
if(row_indices) { memory::release(access::rw(row_indices)); }
access::rw(values) = new_values;
access::rw(row_indices) = new_row_indices;
// Update counts and such.
access::rw(n_nonzero) -= diff;
}
// Update column pointers.
const uword new_n_cols = n_cols - ((in_col2 - in_col1) + 1);
uword* new_col_ptrs = memory::acquire<uword>(new_n_cols + 2);
new_col_ptrs[new_n_cols + 1] = std::numeric_limits<uword>::max();
// Copy first set of columns (no manipulation required).
if(in_col1 != 0)
{
arrayops::copy(new_col_ptrs, col_ptrs, in_col1);
}
// Copy second set of columns (manipulation required).
uword cur_col = in_col1;
for(uword i = in_col2 + 1; i <= n_cols; ++i, ++cur_col)
{
new_col_ptrs[cur_col] = col_ptrs[i] - diff;
}
if(col_ptrs) { memory::release(access::rw(col_ptrs)); }
access::rw(col_ptrs) = new_col_ptrs;
// We update the element and column counts, and we're done.
access::rw(n_cols) = new_n_cols;
access::rw(n_elem) = n_cols * n_rows;
}
/**
* Element access; acces the i'th element (works identically to the Mat accessors).
* If there is nothing at element i, 0 is returned.
*/
template<typename eT>
arma_inline
arma_warn_unused
SpMat_MapMat_val<eT>
SpMat<eT>::operator[](const uword i)
{
const uword in_col = i / n_rows;
const uword in_row = i % n_rows;
return SpMat_MapMat_val<eT>((*this), cache, in_row, in_col);
}
template<typename eT>
arma_inline
arma_warn_unused
eT
SpMat<eT>::operator[](const uword i) const
{
return get_value(i);
}
template<typename eT>
arma_inline
arma_warn_unused
SpMat_MapMat_val<eT>
SpMat<eT>::at(const uword i)
{
const uword in_col = i / n_rows;
const uword in_row = i % n_rows;
return SpMat_MapMat_val<eT>((*this), cache, in_row, in_col);
}
template<typename eT>
arma_inline
arma_warn_unused
eT
SpMat<eT>::at(const uword i) const
{
return get_value(i);
}
template<typename eT>
arma_inline
arma_warn_unused
SpMat_MapMat_val<eT>
SpMat<eT>::operator()(const uword i)
{
arma_debug_check_bounds( (i >= n_elem), "SpMat::operator(): out of bounds" );
const uword in_col = i / n_rows;
const uword in_row = i % n_rows;
return SpMat_MapMat_val<eT>((*this), cache, in_row, in_col);
}
template<typename eT>
arma_inline
arma_warn_unused
eT
SpMat<eT>::operator()(const uword i) const
{
arma_debug_check_bounds( (i >= n_elem), "SpMat::operator(): out of bounds" );
return get_value(i);
}
/**
* Element access; access the element at row in_rows and column in_col.
* If there is nothing at that position, 0 is returned.
*/
template<typename eT>
arma_inline
arma_warn_unused
SpMat_MapMat_val<eT>
SpMat<eT>::at(const uword in_row, const uword in_col)
{
return SpMat_MapMat_val<eT>((*this), cache, in_row, in_col);
}
template<typename eT>
arma_inline
arma_warn_unused
eT
SpMat<eT>::at(const uword in_row, const uword in_col) const
{
return get_value(in_row, in_col);
}
template<typename eT>
arma_inline
arma_warn_unused
SpMat_MapMat_val<eT>
SpMat<eT>::operator()(const uword in_row, const uword in_col)
{
arma_debug_check_bounds( ((in_row >= n_rows) || (in_col >= n_cols)), "SpMat::operator(): out of bounds" );
return SpMat_MapMat_val<eT>((*this), cache, in_row, in_col);
}
template<typename eT>
arma_inline
arma_warn_unused
eT
SpMat<eT>::operator()(const uword in_row, const uword in_col) const
{
arma_debug_check_bounds( ((in_row >= n_rows) || (in_col >= n_cols)), "SpMat::operator(): out of bounds" );
return get_value(in_row, in_col);
}
/**
* Check if matrix is empty (no size, no values).
*/
template<typename eT>
arma_inline
arma_warn_unused
bool
SpMat<eT>::is_empty() const
{
return (n_elem == 0);
}
//! returns true if the object can be interpreted as a column or row vector
template<typename eT>
arma_inline
arma_warn_unused
bool
SpMat<eT>::is_vec() const
{
return ( (n_rows == 1) || (n_cols == 1) );
}
//! returns true if the object can be interpreted as a row vector
template<typename eT>
arma_inline
arma_warn_unused
bool
SpMat<eT>::is_rowvec() const
{
return (n_rows == 1);
}
//! returns true if the object can be interpreted as a column vector
template<typename eT>
arma_inline
arma_warn_unused
bool
SpMat<eT>::is_colvec() const
{
return (n_cols == 1);
}
//! returns true if the object has the same number of non-zero rows and columnns
template<typename eT>
arma_inline
arma_warn_unused
bool
SpMat<eT>::is_square() const
{
return (n_rows == n_cols);
}
//! returns true if all of the elements are finite
template<typename eT>
inline
arma_warn_unused
bool
SpMat<eT>::is_finite() const
{
arma_extra_debug_sigprint();
sync_csc();
return arrayops::is_finite(values, n_nonzero);
}
template<typename eT>
inline
arma_warn_unused
bool
SpMat<eT>::is_symmetric() const
{
arma_extra_debug_sigprint();
const SpMat<eT>& A = (*this);
if(A.n_rows != A.n_cols) { return false; }
const SpMat<eT> tmp = A - A.st();
return (tmp.n_nonzero == uword(0));
}
template<typename eT>
inline
arma_warn_unused
bool
SpMat<eT>::is_symmetric(const typename get_pod_type<elem_type>::result tol) const
{
arma_extra_debug_sigprint();
typedef typename get_pod_type<eT>::result T;
if(tol == T(0)) { return (*this).is_symmetric(); }
arma_debug_check( (tol < T(0)), "is_symmetric(): parameter 'tol' must be >= 0" );
const SpMat<eT>& A = (*this);
if(A.n_rows != A.n_cols) { return false; }
const T norm_A = as_scalar( arma::max(sum(abs(A), 1), 0) );
if(norm_A == T(0)) { return true; }
const T norm_A_Ast = as_scalar( arma::max(sum(abs(A - A.st()), 1), 0) );
return ( (norm_A_Ast / norm_A) <= tol );
}
template<typename eT>
inline
arma_warn_unused
bool
SpMat<eT>::is_hermitian() const
{
arma_extra_debug_sigprint();
const SpMat<eT>& A = (*this);
if(A.n_rows != A.n_cols) { return false; }
const SpMat<eT> tmp = A - A.t();
return (tmp.n_nonzero == uword(0));
}
template<typename eT>
inline
arma_warn_unused
bool
SpMat<eT>::is_hermitian(const typename get_pod_type<elem_type>::result tol) const
{
arma_extra_debug_sigprint();
typedef typename get_pod_type<eT>::result T;
if(tol == T(0)) { return (*this).is_hermitian(); }
arma_debug_check( (tol < T(0)), "is_hermitian(): parameter 'tol' must be >= 0" );
const SpMat<eT>& A = (*this);
if(A.n_rows != A.n_cols) { return false; }
const T norm_A = as_scalar( arma::max(sum(abs(A), 1), 0) );
if(norm_A == T(0)) { return true; }
const T norm_A_At = as_scalar( arma::max(sum(abs(A - A.t()), 1), 0) );
return ( (norm_A_At / norm_A) <= tol );
}
template<typename eT>
inline
arma_warn_unused
bool
SpMat<eT>::has_inf() const
{
arma_extra_debug_sigprint();
sync_csc();
return arrayops::has_inf(values, n_nonzero);
}
template<typename eT>
inline
arma_warn_unused
bool
SpMat<eT>::has_nan() const
{
arma_extra_debug_sigprint();
sync_csc();
return arrayops::has_nan(values, n_nonzero);
}
//! returns true if the given index is currently in range
template<typename eT>
arma_inline
arma_warn_unused
bool
SpMat<eT>::in_range(const uword i) const
{
return (i < n_elem);
}
//! returns true if the given start and end indices are currently in range
template<typename eT>
arma_inline
arma_warn_unused
bool
SpMat<eT>::in_range(const span& x) const
{
arma_extra_debug_sigprint();
if(x.whole)
{
return true;
}
else
{
const uword a = x.a;
const uword b = x.b;
return ( (a <= b) && (b < n_elem) );
}
}
//! returns true if the given location is currently in range
template<typename eT>
arma_inline
arma_warn_unused
bool
SpMat<eT>::in_range(const uword in_row, const uword in_col) const
{
return ( (in_row < n_rows) && (in_col < n_cols) );
}
template<typename eT>
arma_inline
arma_warn_unused
bool
SpMat<eT>::in_range(const span& row_span, const uword in_col) const
{
arma_extra_debug_sigprint();
if(row_span.whole)
{
return (in_col < n_cols);
}
else
{
const uword in_row1 = row_span.a;
const uword in_row2 = row_span.b;
return ( (in_row1 <= in_row2) && (in_row2 < n_rows) && (in_col < n_cols) );
}
}
template<typename eT>
arma_inline
arma_warn_unused
bool
SpMat<eT>::in_range(const uword in_row, const span& col_span) const
{
arma_extra_debug_sigprint();
if(col_span.whole)
{
return (in_row < n_rows);
}
else
{
const uword in_col1 = col_span.a;
const uword in_col2 = col_span.b;
return ( (in_row < n_rows) && (in_col1 <= in_col2) && (in_col2 < n_cols) );
}
}
template<typename eT>
arma_inline
arma_warn_unused
bool
SpMat<eT>::in_range(const span& row_span, const span& col_span) const
{
arma_extra_debug_sigprint();
const uword in_row1 = row_span.a;
const uword in_row2 = row_span.b;
const uword in_col1 = col_span.a;
const uword in_col2 = col_span.b;
const bool rows_ok = row_span.whole ? true : ( (in_row1 <= in_row2) && (in_row2 < n_rows) );
const bool cols_ok = col_span.whole ? true : ( (in_col1 <= in_col2) && (in_col2 < n_cols) );
return ( rows_ok && cols_ok );
}
template<typename eT>
arma_inline
arma_warn_unused
bool
SpMat<eT>::in_range(const uword in_row, const uword in_col, const SizeMat& s) const
{
const uword l_n_rows = n_rows;
const uword l_n_cols = n_cols;
if( (in_row >= l_n_rows) || (in_col >= l_n_cols) || ((in_row + s.n_rows) > l_n_rows) || ((in_col + s.n_cols) > l_n_cols) )
{
return false;
}
else
{
return true;
}
}
//! Set the size to the size of another matrix.
template<typename eT>
template<typename eT2>
inline
void
SpMat<eT>::copy_size(const SpMat<eT2>& m)
{
arma_extra_debug_sigprint();
set_size(m.n_rows, m.n_cols);
}
template<typename eT>
template<typename eT2>
inline
void
SpMat<eT>::copy_size(const Mat<eT2>& m)
{
arma_extra_debug_sigprint();
set_size(m.n_rows, m.n_cols);
}
template<typename eT>
inline
void
SpMat<eT>::set_size(const uword in_elem)
{
arma_extra_debug_sigprint();
// If this is a row vector, we resize to a row vector.
if(vec_state == 2)
{
set_size(1, in_elem);
}
else
{
set_size(in_elem, 1);
}
}
template<typename eT>
inline
void
SpMat<eT>::set_size(const uword in_rows, const uword in_cols)
{
arma_extra_debug_sigprint();
invalidate_cache(); // placed here, as set_size() is used during matrix modification
if( (n_rows == in_rows) && (n_cols == in_cols) )
{
return;
}
else
{
init(in_rows, in_cols);
}
}
template<typename eT>
inline
void
SpMat<eT>::set_size(const SizeMat& s)
{
arma_extra_debug_sigprint();
(*this).set_size(s.n_rows, s.n_cols);
}
template<typename eT>
inline
void
SpMat<eT>::resize(const uword in_rows, const uword in_cols)
{
arma_extra_debug_sigprint();
if( (n_rows == in_rows) && (n_cols == in_cols) )
{
return;
}
if( (n_elem == 0) || (n_nonzero == 0) )
{
set_size(in_rows, in_cols);
return;
}
SpMat<eT> tmp(in_rows, in_cols);
if(tmp.n_elem > 0)
{
sync_csc();
const uword last_row = (std::min)(in_rows, n_rows) - 1;
const uword last_col = (std::min)(in_cols, n_cols) - 1;
tmp.submat(0, 0, last_row, last_col) = (*this).submat(0, 0, last_row, last_col);
}
steal_mem(tmp);
}
template<typename eT>
inline
void
SpMat<eT>::resize(const SizeMat& s)
{
arma_extra_debug_sigprint();
(*this).resize(s.n_rows, s.n_cols);
}
template<typename eT>
inline
void
SpMat<eT>::reshape(const uword in_rows, const uword in_cols)
{
arma_extra_debug_sigprint();
arma_check( ((in_rows*in_cols) != n_elem), "SpMat::reshape(): changing the number of elements in a sparse matrix is currently not supported" );
if( (n_rows == in_rows) && (n_cols == in_cols) ) { return; }
if(vec_state == 1) { arma_debug_check( (in_cols != 1), "SpMat::reshape(): object is a column vector; requested size is not compatible" ); }
if(vec_state == 2) { arma_debug_check( (in_rows != 1), "SpMat::reshape(): object is a row vector; requested size is not compatible" ); }
if(n_nonzero == 0)
{
(*this).zeros(in_rows, in_cols);
return;
}
if(in_cols == 1)
{
(*this).reshape_helper_intovec();
}
else
{
(*this).reshape_helper_generic(in_rows, in_cols);
}
}
template<typename eT>
inline
void
SpMat<eT>::reshape(const SizeMat& s)
{
arma_extra_debug_sigprint();
(*this).reshape(s.n_rows, s.n_cols);
}
template<typename eT>
inline
void
SpMat<eT>::reshape_helper_generic(const uword in_rows, const uword in_cols)
{
arma_extra_debug_sigprint();
sync_csc();
invalidate_cache();
// We have to modify all of the relevant row indices and the relevant column pointers.
// Iterate over all the points to do this. We won't be deleting any points, but we will be modifying
// columns and rows. We'll have to store a new set of column vectors.
uword* new_col_ptrs = memory::acquire<uword>(in_cols + 2);
new_col_ptrs[in_cols + 1] = std::numeric_limits<uword>::max();
uword* new_row_indices = memory::acquire<uword>(n_nonzero + 1);
access::rw(new_row_indices[n_nonzero]) = 0;
arrayops::fill_zeros(new_col_ptrs, in_cols + 1);
const_iterator it = begin();
const_iterator it_end = end();
for(; it != it_end; ++it)
{
uword vector_position = (it.col() * n_rows) + it.row();
new_row_indices[it.pos()] = vector_position % in_rows;
++new_col_ptrs[vector_position / in_rows + 1];
}
// Now sum the column counts to get the new column pointers.
for(uword i = 1; i <= in_cols; i++)
{
access::rw(new_col_ptrs[i]) += new_col_ptrs[i - 1];
}
// Copy the new row indices.
if(row_indices) { memory::release(access::rw(row_indices)); }
if(col_ptrs) { memory::release(access::rw(col_ptrs)); }
access::rw(row_indices) = new_row_indices;
access::rw(col_ptrs) = new_col_ptrs;
// Now set the size.
access::rw(n_rows) = in_rows;
access::rw(n_cols) = in_cols;
}
template<typename eT>
inline
void
SpMat<eT>::reshape_helper_intovec()
{
arma_extra_debug_sigprint();
sync_csc();
invalidate_cache();
const_iterator it = begin();
const uword t_n_rows = n_rows;
const uword t_n_nonzero = n_nonzero;
for(uword i=0; i < t_n_nonzero; ++i)
{
const uword t_index = (it.col() * t_n_rows) + it.row();
// ensure the iterator is pointing to the next element
// before we overwrite the row index of the current element
++it;
access::rw(row_indices[i]) = t_index;
}
access::rw(row_indices[n_nonzero]) = 0;
access::rw(col_ptrs[0]) = 0;
access::rw(col_ptrs[1]) = n_nonzero;
access::rw(col_ptrs[2]) = std::numeric_limits<uword>::max();
access::rw(n_rows) = (n_rows * n_cols);
access::rw(n_cols) = 1;
}
//! apply a functor to each non-zero element
template<typename eT>
template<typename functor>
inline
const SpMat<eT>&
SpMat<eT>::for_each(functor F)
{
arma_extra_debug_sigprint();
sync_csc();
const uword N = (*this).n_nonzero;
eT* rw_values = access::rwp(values);
bool modified = false;
bool has_zero = false;
for(uword i=0; i < N; ++i)
{
eT& new_value = rw_values[i];
const eT old_value = new_value;
F(new_value);
if(new_value != old_value) { modified = true; }
if(new_value == eT(0) ) { has_zero = true; }
}
if(modified) { invalidate_cache(); }
if(has_zero) { remove_zeros(); }
return *this;
}
template<typename eT>
template<typename functor>
inline
const SpMat<eT>&
SpMat<eT>::for_each(functor F) const
{
arma_extra_debug_sigprint();
sync_csc();
const uword N = (*this).n_nonzero;
for(uword i=0; i < N; ++i)
{
F(values[i]);
}
return *this;
}
//! transform each non-zero element using a functor
template<typename eT>
template<typename functor>
inline
const SpMat<eT>&
SpMat<eT>::transform(functor F)
{
arma_extra_debug_sigprint();
sync_csc();
invalidate_cache();
const uword N = (*this).n_nonzero;
eT* rw_values = access::rwp(values);
bool has_zero = false;
for(uword i=0; i < N; ++i)
{
eT& rw_values_i = rw_values[i];
rw_values_i = eT( F(rw_values_i) );
if(rw_values_i == eT(0)) { has_zero = true; }
}
if(has_zero) { remove_zeros(); }
return *this;
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::replace(const eT old_val, const eT new_val)
{
arma_extra_debug_sigprint();
if(old_val == eT(0))
{
arma_debug_warn_level(1, "SpMat::replace(): replacement not done, as old_val = 0");
}
else
{
sync_csc();
invalidate_cache();
arrayops::replace(access::rwp(values), n_nonzero, old_val, new_val);
if(new_val == eT(0)) { remove_zeros(); }
}
return *this;
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::clean(const typename get_pod_type<eT>::result threshold)
{
arma_extra_debug_sigprint();
if(n_nonzero == 0) { return *this; }
sync_csc();
invalidate_cache();
arrayops::clean(access::rwp(values), n_nonzero, threshold);
remove_zeros();
return *this;
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::clamp(const eT min_val, const eT max_val)
{
arma_extra_debug_sigprint();
if(is_cx<eT>::no)
{
arma_debug_check( (access::tmp_real(min_val) > access::tmp_real(max_val)), "SpMat::clamp(): min_val must be less than max_val" );
}
else
{
arma_debug_check( (access::tmp_real(min_val) > access::tmp_real(max_val)), "SpMat::clamp(): real(min_val) must be less than real(max_val)" );
arma_debug_check( (access::tmp_imag(min_val) > access::tmp_imag(max_val)), "SpMat::clamp(): imag(min_val) must be less than imag(max_val)" );
}
if(n_nonzero == 0) { return *this; }
sync_csc();
invalidate_cache();
arrayops::clamp(access::rwp(values), n_nonzero, min_val, max_val);
if( (min_val == eT(0)) || (max_val == eT(0)) ) { remove_zeros(); }
return *this;
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::zeros()
{
arma_extra_debug_sigprint();
const bool already_done = ( (sync_state != 1) && (n_nonzero == 0) );
if(already_done == false)
{
init(n_rows, n_cols);
}
return *this;
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::zeros(const uword in_elem)
{
arma_extra_debug_sigprint();
if(vec_state == 2)
{
zeros(1, in_elem); // Row vector
}
else
{
zeros(in_elem, 1);
}
return *this;
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::zeros(const uword in_rows, const uword in_cols)
{
arma_extra_debug_sigprint();
const bool already_done = ( (sync_state != 1) && (n_nonzero == 0) && (n_rows == in_rows) && (n_cols == in_cols) );
if(already_done == false)
{
init(in_rows, in_cols);
}
return *this;
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::zeros(const SizeMat& s)
{
arma_extra_debug_sigprint();
return (*this).zeros(s.n_rows, s.n_cols);
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::eye()
{
arma_extra_debug_sigprint();
return (*this).eye(n_rows, n_cols);
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::eye(const uword in_rows, const uword in_cols)
{
arma_extra_debug_sigprint();
const uword N = (std::min)(in_rows, in_cols);
init(in_rows, in_cols, N);
arrayops::inplace_set(access::rwp(values), eT(1), N);
for(uword i = 0; i < N; ++i) { access::rw(row_indices[i]) = i; }
for(uword i = 0; i <= N; ++i) { access::rw(col_ptrs[i]) = i; }
// take into account non-square matrices
for(uword i = (N+1); i <= in_cols; ++i) { access::rw(col_ptrs[i]) = N; }
access::rw(n_nonzero) = N;
return *this;
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::eye(const SizeMat& s)
{
arma_extra_debug_sigprint();
return (*this).eye(s.n_rows, s.n_cols);
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::speye()
{
arma_extra_debug_sigprint();
return (*this).eye(n_rows, n_cols);
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::speye(const uword in_n_rows, const uword in_n_cols)
{
arma_extra_debug_sigprint();
return (*this).eye(in_n_rows, in_n_cols);
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::speye(const SizeMat& s)
{
arma_extra_debug_sigprint();
return (*this).eye(s.n_rows, s.n_cols);
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::sprandu(const uword in_rows, const uword in_cols, const double density)
{
arma_extra_debug_sigprint();
arma_debug_check( ( (density < double(0)) || (density > double(1)) ), "sprandu(): density must be in the [0,1] interval" );
const uword new_n_nonzero = uword(density * double(in_rows) * double(in_cols) + 0.5);
init(in_rows, in_cols, new_n_nonzero);
if(new_n_nonzero == 0) { return *this; }
arma_rng::randu<eT>::fill( access::rwp(values), new_n_nonzero );
uvec indices = linspace<uvec>( 0u, in_rows*in_cols-1, new_n_nonzero );
// perturb the indices
for(uword i=1; i < new_n_nonzero-1; ++i)
{
const uword index_left = indices[i-1];
const uword index_right = indices[i+1];
const uword center = (index_left + index_right) / 2;
const uword delta1 = center - index_left - 1;
const uword delta2 = index_right - center - 1;
const uword min_delta = (std::min)(delta1, delta2);
uword index_new = uword( double(center) + double(min_delta) * (2.0*randu()-1.0) );
// paranoia, but better be safe than sorry
if( (index_left < index_new) && (index_new < index_right) )
{
indices[i] = index_new;
}
}
uword cur_index = 0;
uword count = 0;
for(uword lcol = 0; lcol < in_cols; ++lcol)
for(uword lrow = 0; lrow < in_rows; ++lrow)
{
if(count == indices[cur_index])
{
access::rw(row_indices[cur_index]) = lrow;
access::rw(col_ptrs[lcol + 1])++;
++cur_index;
}
++count;
}
if(cur_index != new_n_nonzero)
{
// Fix size to correct size.
mem_resize(cur_index);
}
// Sum column pointers.
for(uword lcol = 1; lcol <= in_cols; ++lcol)
{
access::rw(col_ptrs[lcol]) += col_ptrs[lcol - 1];
}
return *this;
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::sprandu(const SizeMat& s, const double density)
{
arma_extra_debug_sigprint();
return (*this).sprandu(s.n_rows, s.n_cols, density);
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::sprandn(const uword in_rows, const uword in_cols, const double density)
{
arma_extra_debug_sigprint();
arma_debug_check( ( (density < double(0)) || (density > double(1)) ), "sprandn(): density must be in the [0,1] interval" );
const uword new_n_nonzero = uword(density * double(in_rows) * double(in_cols) + 0.5);
init(in_rows, in_cols, new_n_nonzero);
if(new_n_nonzero == 0) { return *this; }
arma_rng::randn<eT>::fill( access::rwp(values), new_n_nonzero );
uvec indices = linspace<uvec>( 0u, in_rows*in_cols-1, new_n_nonzero );
// perturb the indices
for(uword i=1; i < new_n_nonzero-1; ++i)
{
const uword index_left = indices[i-1];
const uword index_right = indices[i+1];
const uword center = (index_left + index_right) / 2;
const uword delta1 = center - index_left - 1;
const uword delta2 = index_right - center - 1;
const uword min_delta = (std::min)(delta1, delta2);
uword index_new = uword( double(center) + double(min_delta) * (2.0*randu()-1.0) );
// paranoia, but better be safe than sorry
if( (index_left < index_new) && (index_new < index_right) )
{
indices[i] = index_new;
}
}
uword cur_index = 0;
uword count = 0;
for(uword lcol = 0; lcol < in_cols; ++lcol)
for(uword lrow = 0; lrow < in_rows; ++lrow)
{
if(count == indices[cur_index])
{
access::rw(row_indices[cur_index]) = lrow;
access::rw(col_ptrs[lcol + 1])++;
++cur_index;
}
++count;
}
if(cur_index != new_n_nonzero)
{
// Fix size to correct size.
mem_resize(cur_index);
}
// Sum column pointers.
for(uword lcol = 1; lcol <= in_cols; ++lcol)
{
access::rw(col_ptrs[lcol]) += col_ptrs[lcol - 1];
}
return *this;
}
template<typename eT>
inline
const SpMat<eT>&
SpMat<eT>::sprandn(const SizeMat& s, const double density)
{
arma_extra_debug_sigprint();
return (*this).sprandn(s.n_rows, s.n_cols, density);
}
template<typename eT>
inline
void
SpMat<eT>::reset()
{
arma_extra_debug_sigprint();
switch(vec_state)
{
default:
init(0, 0);
break;
case 1:
init(0, 1);
break;
case 2:
init(1, 0);
break;
}
}
template<typename eT>
inline
void
SpMat<eT>::reset_cache()
{
arma_extra_debug_sigprint();
sync_csc();
#if defined(ARMA_USE_OPENMP)
{
#pragma omp critical (arma_SpMat_cache)
{
cache.reset();
sync_state = 0;
}
}
#elif (!defined(ARMA_DONT_USE_STD_MUTEX))
{
cache_mutex.lock();
cache.reset();
sync_state = 0;
cache_mutex.unlock();
}
#else
{
cache.reset();
sync_state = 0;
}
#endif
}
template<typename eT>
inline
void
SpMat<eT>::reserve(const uword in_rows, const uword in_cols, const uword new_n_nonzero)
{
arma_extra_debug_sigprint();
init(in_rows, in_cols, new_n_nonzero);
}
template<typename eT>
template<typename T1>
inline
void
SpMat<eT>::set_real(const SpBase<typename SpMat<eT>::pod_type,T1>& X)
{
arma_extra_debug_sigprint();
SpMat_aux::set_real(*this, X);
}
template<typename eT>
template<typename T1>
inline
void
SpMat<eT>::set_imag(const SpBase<typename SpMat<eT>::pod_type,T1>& X)
{
arma_extra_debug_sigprint();
SpMat_aux::set_imag(*this, X);
}
//! save the matrix to a file
template<typename eT>
inline
arma_cold
bool
SpMat<eT>::save(const std::string name, const file_type type) const
{
arma_extra_debug_sigprint();
sync_csc();
bool save_okay;
switch(type)
{
case csv_ascii:
return (*this).save(csv_name(name), type);
break;
case ssv_ascii:
return (*this).save(csv_name(name), type);
break;
case arma_binary:
save_okay = diskio::save_arma_binary(*this, name);
break;
case coord_ascii:
save_okay = diskio::save_coord_ascii(*this, name);
break;
default:
arma_debug_warn_level(1, "SpMat::save(): unsupported file type");
save_okay = false;
}
if(save_okay == false) { arma_debug_warn_level(3, "SpMat::save(): couldn't write; file: ", name); }
return save_okay;
}
template<typename eT>
inline
arma_cold
bool
SpMat<eT>::save(const csv_name& spec, const file_type type) const
{
arma_extra_debug_sigprint();
if( (type != csv_ascii) && (type != ssv_ascii) )
{
arma_stop_runtime_error("SpMat::save(): unsupported file type for csv_name()");
return false;
}
const bool do_trans = bool(spec.opts.flags & csv_opts::flag_trans );
const bool no_header = bool(spec.opts.flags & csv_opts::flag_no_header );
bool with_header = bool(spec.opts.flags & csv_opts::flag_with_header);
const bool use_semicolon = bool(spec.opts.flags & csv_opts::flag_semicolon ) || (type == ssv_ascii);
arma_extra_debug_print("SpMat::save(csv_name): enabled flags:");
if(do_trans ) { arma_extra_debug_print("trans"); }
if(no_header ) { arma_extra_debug_print("no_header"); }
if(with_header ) { arma_extra_debug_print("with_header"); }
if(use_semicolon) { arma_extra_debug_print("semicolon"); }
const char separator = (use_semicolon) ? char(';') : char(',');
if(no_header) { with_header = false; }
if(with_header)
{
if( (spec.header_ro.n_cols != 1) && (spec.header_ro.n_rows != 1) )
{
arma_debug_warn_level(1, "SpMat::save(): given header must have a vector layout");
return false;
}
for(uword i=0; i < spec.header_ro.n_elem; ++i)
{
const std::string& token = spec.header_ro.at(i);
if(token.find(separator) != std::string::npos)
{
arma_debug_warn_level(1, "SpMat::save(): token within the header contains the separator character: '", token, "'");
return false;
}
}
const uword save_n_cols = (do_trans) ? (*this).n_rows : (*this).n_cols;
if(spec.header_ro.n_elem != save_n_cols)
{
arma_debug_warn_level(1, "SpMat::save(): size mistmach between header and matrix");
return false;
}
}
bool save_okay = false;
if(do_trans)
{
const SpMat<eT> tmp = (*this).st();
save_okay = diskio::save_csv_ascii(tmp, spec.filename, spec.header_ro, with_header, separator);
}
else
{
save_okay = diskio::save_csv_ascii(*this, spec.filename, spec.header_ro, with_header, separator);
}
if(save_okay == false) { arma_debug_warn_level(3, "SpMat::save(): couldn't write; file: ", spec.filename); }
return save_okay;
}
//! save the matrix to a stream
template<typename eT>
inline
arma_cold
bool
SpMat<eT>::save(std::ostream& os, const file_type type) const
{
arma_extra_debug_sigprint();
sync_csc();
bool save_okay;
switch(type)
{
case csv_ascii:
save_okay = diskio::save_csv_ascii(*this, os, char(','));
break;
case ssv_ascii:
save_okay = diskio::save_csv_ascii(*this, os, char(';'));
break;
case arma_binary:
save_okay = diskio::save_arma_binary(*this, os);
break;
case coord_ascii:
save_okay = diskio::save_coord_ascii(*this, os);
break;
default:
arma_debug_warn_level(1, "SpMat::save(): unsupported file type");
save_okay = false;
}
if(save_okay == false) { arma_debug_warn_level(3, "SpMat::save(): couldn't write to stream"); }
return save_okay;
}
//! load a matrix from a file
template<typename eT>
inline
arma_cold
bool
SpMat<eT>::load(const std::string name, const file_type type)
{
arma_extra_debug_sigprint();
invalidate_cache();
bool load_okay;
std::string err_msg;
switch(type)
{
// case auto_detect:
// load_okay = diskio::load_auto_detect(*this, name, err_msg);
// break;
case csv_ascii:
return (*this).load(csv_name(name), type);
break;
case ssv_ascii:
return (*this).load(csv_name(name), type);
break;
case arma_binary:
load_okay = diskio::load_arma_binary(*this, name, err_msg);
break;
case coord_ascii:
load_okay = diskio::load_coord_ascii(*this, name, err_msg);
break;
default:
arma_debug_warn_level(1, "SpMat::load(): unsupported file type");
load_okay = false;
}
if(load_okay == false)
{
if(err_msg.length() > 0)
{
arma_debug_warn_level(3, "SpMat::load(): ", err_msg, "; file: ", name);
}
else
{
arma_debug_warn_level(3, "SpMat::load(): couldn't read; file: ", name);
}
}
if(load_okay == false) { (*this).reset(); }
return load_okay;
}
template<typename eT>
inline
arma_cold
bool
SpMat<eT>::load(const csv_name& spec, const file_type type)
{
arma_extra_debug_sigprint();
if( (type != csv_ascii) && (type != ssv_ascii) )
{
arma_stop_runtime_error("SpMat::load(): unsupported file type for csv_name()");
return false;
}
const bool do_trans = bool(spec.opts.flags & csv_opts::flag_trans );
const bool no_header = bool(spec.opts.flags & csv_opts::flag_no_header );
bool with_header = bool(spec.opts.flags & csv_opts::flag_with_header);
const bool use_semicolon = bool(spec.opts.flags & csv_opts::flag_semicolon ) || (type == ssv_ascii);
arma_extra_debug_print("SpMat::load(csv_name): enabled flags:");
if(do_trans ) { arma_extra_debug_print("trans"); }
if(no_header ) { arma_extra_debug_print("no_header"); }
if(with_header ) { arma_extra_debug_print("with_header"); }
if(use_semicolon) { arma_extra_debug_print("semicolon"); }
const char separator = (use_semicolon) ? char(';') : char(',');
if(no_header) { with_header = false; }
bool load_okay = false;
std::string err_msg;
if(do_trans)
{
SpMat<eT> tmp_mat;
load_okay = diskio::load_csv_ascii(tmp_mat, spec.filename, err_msg, spec.header_rw, with_header, separator);
if(load_okay)
{
(*this) = tmp_mat.st();
if(with_header)
{
// field::set_size() preserves data if the number of elements hasn't changed
spec.header_rw.set_size(spec.header_rw.n_elem, 1);
}
}
}
else
{
load_okay = diskio::load_csv_ascii(*this, spec.filename, err_msg, spec.header_rw, with_header, separator);
}
if(load_okay == false)
{
if(err_msg.length() > 0)
{
arma_debug_warn_level(3, "SpMat::load(): ", err_msg, "; file: ", spec.filename);
}
else
{
arma_debug_warn_level(3, "SpMat::load(): couldn't read; file: ", spec.filename);
}
}
else
{
const uword load_n_cols = (do_trans) ? (*this).n_rows : (*this).n_cols;
if(with_header && (spec.header_rw.n_elem != load_n_cols))
{
arma_debug_warn_level(3, "SpMat::load(): size mistmach between header and matrix");
}
}
if(load_okay == false)
{
(*this).reset();
if(with_header) { spec.header_rw.reset(); }
}
return load_okay;
}
//! load a matrix from a stream
template<typename eT>
inline
arma_cold
bool
SpMat<eT>::load(std::istream& is, const file_type type)
{
arma_extra_debug_sigprint();
invalidate_cache();
bool load_okay;
std::string err_msg;
switch(type)
{
// case auto_detect:
// load_okay = diskio::load_auto_detect(*this, is, err_msg);
// break;
case csv_ascii:
load_okay = diskio::load_csv_ascii(*this, is, err_msg, char(','));
break;
case ssv_ascii:
load_okay = diskio::load_csv_ascii(*this, is, err_msg, char(';'));
break;
case arma_binary:
load_okay = diskio::load_arma_binary(*this, is, err_msg);
break;
case coord_ascii:
load_okay = diskio::load_coord_ascii(*this, is, err_msg);
break;
default:
arma_debug_warn_level(1, "SpMat::load(): unsupported file type");
load_okay = false;
}
if(load_okay == false)
{
if(err_msg.length() > 0)
{
arma_debug_warn_level(3, "SpMat::load(): ", err_msg);
}
else
{
arma_debug_warn_level(3, "SpMat::load(): couldn't load from stream");
}
}
if(load_okay == false) { (*this).reset(); }
return load_okay;
}
//! save the matrix to a file, without printing any error messages
template<typename eT>
inline
arma_cold
bool
SpMat<eT>::quiet_save(const std::string name, const file_type type) const
{
arma_extra_debug_sigprint();
return (*this).save(name, type);
}
//! save the matrix to a stream, without printing any error messages
template<typename eT>
inline
arma_cold
bool
SpMat<eT>::quiet_save(std::ostream& os, const file_type type) const
{
arma_extra_debug_sigprint();
return (*this).save(os, type);
}
//! load a matrix from a file, without printing any error messages
template<typename eT>
inline
arma_cold
bool
SpMat<eT>::quiet_load(const std::string name, const file_type type)
{
arma_extra_debug_sigprint();
return (*this).load(name, type);
}
//! load a matrix from a stream, without printing any error messages
template<typename eT>
inline
arma_cold
bool
SpMat<eT>::quiet_load(std::istream& is, const file_type type)
{
arma_extra_debug_sigprint();
return (*this).load(is, type);
}
/**
* Initialize the matrix to the specified size. Data is not preserved, so the matrix is assumed to be entirely sparse (empty).
*/
template<typename eT>
inline
void
SpMat<eT>::init(uword in_rows, uword in_cols, const uword new_n_nonzero)
{
arma_extra_debug_sigprint();
invalidate_cache(); // placed here, as init() is used during matrix modification
// Clean out the existing memory.
if(values ) { memory::release(access::rw(values)); }
if(row_indices) { memory::release(access::rw(row_indices)); }
if(col_ptrs ) { memory::release(access::rw(col_ptrs)); }
// in case init_cold() throws an exception
access::rw(n_rows) = 0;
access::rw(n_cols) = 0;
access::rw(n_elem) = 0;
access::rw(n_nonzero) = 0;
access::rw(values) = nullptr;
access::rw(row_indices) = nullptr;
access::rw(col_ptrs) = nullptr;
init_cold(in_rows, in_cols, new_n_nonzero);
}
template<typename eT>
inline
void
arma_cold
SpMat<eT>::init_cold(uword in_rows, uword in_cols, const uword new_n_nonzero)
{
arma_extra_debug_sigprint();
// Verify that we are allowed to do this.
if(vec_state > 0)
{
if((in_rows == 0) && (in_cols == 0))
{
if(vec_state == 1) { in_cols = 1; }
if(vec_state == 2) { in_rows = 1; }
}
else
{
if(vec_state == 1) { arma_debug_check( (in_cols != 1), "SpMat::init(): object is a column vector; requested size is not compatible" ); }
if(vec_state == 2) { arma_debug_check( (in_rows != 1), "SpMat::init(): object is a row vector; requested size is not compatible" ); }
}
}
#if defined(ARMA_64BIT_WORD)
const char* error_message = "SpMat::init(): requested size is too large";
#else
const char* error_message = "SpMat::init(): requested size is too large; suggest to enable ARMA_64BIT_WORD";
#endif
// Ensure that n_elem can hold the result of (n_rows * n_cols)
arma_debug_check
(
(
( (in_rows > ARMA_MAX_UHWORD) || (in_cols > ARMA_MAX_UHWORD) )
? ( (double(in_rows) * double(in_cols)) > double(ARMA_MAX_UWORD) )
: false
),
error_message
);
access::rw(col_ptrs) = memory::acquire<uword>(in_cols + 2);
access::rw(values) = memory::acquire<eT> (new_n_nonzero + 1);
access::rw(row_indices) = memory::acquire<uword>(new_n_nonzero + 1);
// fill column pointers with 0,
// except for the last element which contains the maximum possible element
// (so iterators terminate correctly).
arrayops::fill_zeros(access::rwp(col_ptrs), in_cols + 1);
access::rw(col_ptrs[in_cols + 1]) = std::numeric_limits<uword>::max();
access::rw( values[new_n_nonzero]) = 0;
access::rw(row_indices[new_n_nonzero]) = 0;
// Set the new size accordingly.
access::rw(n_rows) = in_rows;
access::rw(n_cols) = in_cols;
access::rw(n_elem) = (in_rows * in_cols);
access::rw(n_nonzero) = new_n_nonzero;
}
template<typename eT>
inline
void
SpMat<eT>::init(const std::string& text)
{
arma_extra_debug_sigprint();
Mat<eT> tmp(text);
if(vec_state == 1)
{
if((tmp.n_elem > 0) && tmp.is_vec())
{
access::rw(tmp.n_rows) = tmp.n_elem;
access::rw(tmp.n_cols) = 1;
}
}
if(vec_state == 2)
{
if((tmp.n_elem > 0) && tmp.is_vec())
{
access::rw(tmp.n_rows) = 1;
access::rw(tmp.n_cols) = tmp.n_elem;
}
}
(*this).operator=(tmp);
}
template<typename eT>
inline
void
SpMat<eT>::init(const SpMat<eT>& x)
{
arma_extra_debug_sigprint();
if(this == &x) { return; }
bool init_done = false;
#if defined(ARMA_USE_OPENMP)
if(x.sync_state == 1)
{
#pragma omp critical (arma_SpMat_init)
if(x.sync_state == 1)
{
(*this).init(x.cache);
init_done = true;
}
}
#elif (!defined(ARMA_DONT_USE_STD_MUTEX))
if(x.sync_state == 1)
{
x.cache_mutex.lock();
if(x.sync_state == 1)
{
(*this).init(x.cache);
init_done = true;
}
x.cache_mutex.unlock();
}
#else
if(x.sync_state == 1)
{
(*this).init(x.cache);
init_done = true;
}
#endif
if(init_done == false)
{
(*this).init_simple(x);
}
}
template<typename eT>
inline
void
SpMat<eT>::init(const MapMat<eT>& x)
{
arma_extra_debug_sigprint();
const uword x_n_rows = x.n_rows;
const uword x_n_cols = x.n_cols;
const uword x_n_nz = x.get_n_nonzero();
init(x_n_rows, x_n_cols, x_n_nz);
if(x_n_nz == 0) { return; }
typename MapMat<eT>::map_type& x_map_ref = *(x.map_ptr);
typename MapMat<eT>::map_type::const_iterator x_it = x_map_ref.begin();
uword x_col = 0;
uword x_col_index_start = 0;
uword x_col_index_endp1 = x_n_rows;
for(uword i=0; i < x_n_nz; ++i)
{
const std::pair<uword, eT>& x_entry = (*x_it);
const uword x_index = x_entry.first;
const eT x_val = x_entry.second;
// have we gone past the curent column?
if(x_index >= x_col_index_endp1)
{
x_col = x_index / x_n_rows;
x_col_index_start = x_col * x_n_rows;
x_col_index_endp1 = x_col_index_start + x_n_rows;
}
const uword x_row = x_index - x_col_index_start;
// // sanity check
//
// const uword tmp_x_row = x_index % x_n_rows;
// const uword tmp_x_col = x_index / x_n_rows;
//
// if(x_row != tmp_x_row) { cout << "x_row != tmp_x_row" << endl; exit(-1); }
// if(x_col != tmp_x_col) { cout << "x_col != tmp_x_col" << endl; exit(-1); }
access::rw(values[i]) = x_val;
access::rw(row_indices[i]) = x_row;
access::rw(col_ptrs[ x_col + 1 ])++;
++x_it;
}
for(uword i = 0; i < x_n_cols; ++i)
{
access::rw(col_ptrs[i + 1]) += col_ptrs[i];
}
// // OLD METHOD
//
// for(uword i=0; i < x_n_nz; ++i)
// {
// const std::pair<uword, eT>& x_entry = (*x_it);
//
// const uword x_index = x_entry.first;
// const eT x_val = x_entry.second;
//
// const uword x_row = x_index % x_n_rows;
// const uword x_col = x_index / x_n_rows;
//
// access::rw(values[i]) = x_val;
// access::rw(row_indices[i]) = x_row;
//
// access::rw(col_ptrs[ x_col + 1 ])++;
//
// ++x_it;
// }
//
//
// for(uword i = 0; i < x_n_cols; ++i)
// {
// access::rw(col_ptrs[i + 1]) += col_ptrs[i];
// }
}
template<typename eT>
inline
void
SpMat<eT>::init_simple(const SpMat<eT>& x)
{
arma_extra_debug_sigprint();
if(this == &x) { return; }
init(x.n_rows, x.n_cols, x.n_nonzero);
if(x.values ) { arrayops::copy(access::rwp(values), x.values, x.n_nonzero + 1); }
if(x.row_indices) { arrayops::copy(access::rwp(row_indices), x.row_indices, x.n_nonzero + 1); }
if(x.col_ptrs ) { arrayops::copy(access::rwp(col_ptrs), x.col_ptrs, x.n_cols + 1); }
}
template<typename eT>
inline
void
SpMat<eT>::init_batch_std(const Mat<uword>& locs, const Mat<eT>& vals, const bool sort_locations)
{
arma_extra_debug_sigprint();
// Resize to correct number of elements.
mem_resize(vals.n_elem);
// Reset column pointers to zero.
arrayops::fill_zeros(access::rwp(col_ptrs), n_cols + 1);
bool actually_sorted = true;
if(sort_locations)
{
// check if we really need a time consuming sort
const uword locs_n_cols = locs.n_cols;
for(uword i = 1; i < locs_n_cols; ++i)
{
const uword* locs_i = locs.colptr(i );
const uword* locs_im1 = locs.colptr(i-1);
const uword row_i = locs_i[0];
const uword col_i = locs_i[1];
const uword row_im1 = locs_im1[0];
const uword col_im1 = locs_im1[1];
if( (col_i < col_im1) || ((col_i == col_im1) && (row_i <= row_im1)) )
{
actually_sorted = false;
break;
}
}
if(actually_sorted == false)
{
// see op_sort_index_bones.hpp for the definition of arma_sort_index_packet and arma_sort_index_helper_ascend
std::vector< arma_sort_index_packet<uword> > packet_vec(locs_n_cols);
const uword* locs_mem = locs.memptr();
for(uword i = 0; i < locs_n_cols; ++i)
{
const uword row = (*locs_mem); locs_mem++;
const uword col = (*locs_mem); locs_mem++;
packet_vec[i].val = (col * n_rows) + row;
packet_vec[i].index = i;
}
arma_sort_index_helper_ascend<uword> comparator;
std::sort( packet_vec.begin(), packet_vec.end(), comparator );
// insert the elements in the sorted order
for(uword i = 0; i < locs_n_cols; ++i)
{
const uword index = packet_vec[i].index;
const uword* locs_i = locs.colptr(index);
const uword row_i = locs_i[0];
const uword col_i = locs_i[1];
arma_debug_check( ( (row_i >= n_rows) || (col_i >= n_cols) ), "SpMat::SpMat(): invalid row or column index" );
if(i > 0)
{
const uword prev_index = packet_vec[i-1].index;
const uword* locs_im1 = locs.colptr(prev_index);
const uword row_im1 = locs_im1[0];
const uword col_im1 = locs_im1[1];
arma_debug_check( ( (row_i == row_im1) && (col_i == col_im1) ), "SpMat::SpMat(): detected identical locations" );
}
access::rw(values[i]) = vals[index];
access::rw(row_indices[i]) = row_i;
access::rw(col_ptrs[ col_i + 1 ])++;
}
}
}
if( (sort_locations == false) || (actually_sorted == true) )
{
// Now set the values and row indices correctly.
// Increment the column pointers in each column (so they are column "counts").
const uword locs_n_cols = locs.n_cols;
for(uword i=0; i < locs_n_cols; ++i)
{
const uword* locs_i = locs.colptr(i);
const uword row_i = locs_i[0];
const uword col_i = locs_i[1];
arma_debug_check( ( (row_i >= n_rows) || (col_i >= n_cols) ), "SpMat::SpMat(): invalid row or column index" );
if(i > 0)
{
const uword* locs_im1 = locs.colptr(i-1);
const uword row_im1 = locs_im1[0];
const uword col_im1 = locs_im1[1];
arma_debug_check
(
( (col_i < col_im1) || ((col_i == col_im1) && (row_i < row_im1)) ),
"SpMat::SpMat(): out of order points; either pass sort_locations = true, or sort points in column-major ordering"
);
arma_debug_check( ( (col_i == col_im1) && (row_i == row_im1) ), "SpMat::SpMat(): detected identical locations" );
}
access::rw(values[i]) = vals[i];
access::rw(row_indices[i]) = row_i;
access::rw(col_ptrs[ col_i + 1 ])++;
}
}
// Now fix the column pointers.
for(uword i = 0; i < n_cols; ++i)
{
access::rw(col_ptrs[i + 1]) += col_ptrs[i];
}
}
template<typename eT>
inline
void
SpMat<eT>::init_batch_add(const Mat<uword>& locs, const Mat<eT>& vals, const bool sort_locations)
{
arma_extra_debug_sigprint();
if(locs.n_cols < 2)
{
init_batch_std(locs, vals, false);
return;
}
// Reset column pointers to zero.
arrayops::fill_zeros(access::rwp(col_ptrs), n_cols + 1);
bool actually_sorted = true;
if(sort_locations)
{
// sort_index() uses std::sort() which may use quicksort... so we better
// make sure it's not already sorted before taking an O(N^2) sort penalty.
for(uword i = 1; i < locs.n_cols; ++i)
{
const uword* locs_i = locs.colptr(i );
const uword* locs_im1 = locs.colptr(i-1);
if( (locs_i[1] < locs_im1[1]) || (locs_i[1] == locs_im1[1] && locs_i[0] <= locs_im1[0]) )
{
actually_sorted = false;
break;
}
}
if(actually_sorted == false)
{
// This may not be the fastest possible implementation but it maximizes code reuse.
Col<uword> abslocs(locs.n_cols, arma_nozeros_indicator());
for(uword i = 0; i < locs.n_cols; ++i)
{
const uword* locs_i = locs.colptr(i);
abslocs[i] = locs_i[1] * n_rows + locs_i[0];
}
uvec sorted_indices = sort_index(abslocs); // Ascending sort.
// work out the number of unique elments
uword n_unique = 1; // first element is unique
for(uword i=1; i < sorted_indices.n_elem; ++i)
{
const uword* locs_i = locs.colptr( sorted_indices[i ] );
const uword* locs_im1 = locs.colptr( sorted_indices[i-1] );
if( (locs_i[1] != locs_im1[1]) || (locs_i[0] != locs_im1[0]) ) { ++n_unique; }
}
// resize to correct number of elements
mem_resize(n_unique);
// Now we add the elements in this sorted order.
uword count = 0;
// first element
{
const uword i = 0;
const uword* locs_i = locs.colptr( sorted_indices[i] );
arma_debug_check( ( (locs_i[0] >= n_rows) || (locs_i[1] >= n_cols) ), "SpMat::SpMat(): invalid row or column index" );
access::rw(values[count]) = vals[ sorted_indices[i] ];
access::rw(row_indices[count]) = locs_i[0];
access::rw(col_ptrs[ locs_i[1] + 1 ])++;
}
for(uword i=1; i < sorted_indices.n_elem; ++i)
{
const uword* locs_i = locs.colptr( sorted_indices[i ] );
const uword* locs_im1 = locs.colptr( sorted_indices[i-1] );
arma_debug_check( ( (locs_i[0] >= n_rows) || (locs_i[1] >= n_cols) ), "SpMat::SpMat(): invalid row or column index" );
if( (locs_i[1] == locs_im1[1]) && (locs_i[0] == locs_im1[0]) )
{
access::rw(values[count]) += vals[ sorted_indices[i] ];
}
else
{
count++;
access::rw(values[count]) = vals[ sorted_indices[i] ];
access::rw(row_indices[count]) = locs_i[0];
access::rw(col_ptrs[ locs_i[1] + 1 ])++;
}
}
}
}
if( (sort_locations == false) || (actually_sorted == true) )
{
// work out the number of unique elments
uword n_unique = 1; // first element is unique
for(uword i=1; i < locs.n_cols; ++i)
{
const uword* locs_i = locs.colptr(i );
const uword* locs_im1 = locs.colptr(i-1);
if( (locs_i[1] != locs_im1[1]) || (locs_i[0] != locs_im1[0]) ) { ++n_unique; }
}
// resize to correct number of elements
mem_resize(n_unique);
// Now set the values and row indices correctly.
// Increment the column pointers in each column (so they are column "counts").
uword count = 0;
// first element
{
const uword i = 0;
const uword* locs_i = locs.colptr(i);
arma_debug_check( ( (locs_i[0] >= n_rows) || (locs_i[1] >= n_cols) ), "SpMat::SpMat(): invalid row or column index" );
access::rw(values[count]) = vals[i];
access::rw(row_indices[count]) = locs_i[0];
access::rw(col_ptrs[ locs_i[1] + 1 ])++;
}
for(uword i=1; i < locs.n_cols; ++i)
{
const uword* locs_i = locs.colptr(i );
const uword* locs_im1 = locs.colptr(i-1);
arma_debug_check( ( (locs_i[0] >= n_rows) || (locs_i[1] >= n_cols) ), "SpMat::SpMat(): invalid row or column index" );
arma_debug_check
(
( (locs_i[1] < locs_im1[1]) || (locs_i[1] == locs_im1[1] && locs_i[0] < locs_im1[0]) ),
"SpMat::SpMat(): out of order points; either pass sort_locations = true, or sort points in column-major ordering"
);
if( (locs_i[1] == locs_im1[1]) && (locs_i[0] == locs_im1[0]) )
{
access::rw(values[count]) += vals[i];
}
else
{
count++;
access::rw(values[count]) = vals[i];
access::rw(row_indices[count]) = locs_i[0];
access::rw(col_ptrs[ locs_i[1] + 1 ])++;
}
}
}
// Now fix the column pointers.
for(uword i = 0; i < n_cols; ++i)
{
access::rw(col_ptrs[i + 1]) += col_ptrs[i];
}
}
//! constructor used by SpRow and SpCol classes
template<typename eT>
inline
SpMat<eT>::SpMat(const arma_vec_indicator&, const uword in_vec_state)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(in_vec_state)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
const uword in_n_rows = (in_vec_state == 2) ? 1 : 0;
const uword in_n_cols = (in_vec_state == 1) ? 1 : 0;
init_cold(in_n_rows, in_n_cols);
}
//! constructor used by SpRow and SpCol classes
template<typename eT>
inline
SpMat<eT>::SpMat(const arma_vec_indicator&, const uword in_n_rows, const uword in_n_cols, const uword in_vec_state)
: n_rows(0)
, n_cols(0)
, n_elem(0)
, n_nonzero(0)
, vec_state(in_vec_state)
, values(nullptr)
, row_indices(nullptr)
, col_ptrs(nullptr)
{
arma_extra_debug_sigprint_this(this);
init_cold(in_n_rows, in_n_cols);
}
template<typename eT>
inline
void
SpMat<eT>::mem_resize(const uword new_n_nonzero)
{
arma_extra_debug_sigprint();
invalidate_cache(); // placed here, as mem_resize() is used during matrix modification
if(n_nonzero == new_n_nonzero) { return; }
eT* new_values = memory::acquire<eT> (new_n_nonzero + 1);
uword* new_row_indices = memory::acquire<uword>(new_n_nonzero + 1);
if( (n_nonzero > 0 ) && (new_n_nonzero > 0) )
{
// Copy old elements.
uword copy_len = (std::min)(n_nonzero, new_n_nonzero);
arrayops::copy(new_values, values, copy_len);
arrayops::copy(new_row_indices, row_indices, copy_len);
}
if(values) { memory::release(access::rw(values)); }
if(row_indices) { memory::release(access::rw(row_indices)); }
access::rw(values) = new_values;
access::rw(row_indices) = new_row_indices;
// Set the "fake end" of the matrix by setting the last value and row index to 0.
// This helps the iterators work correctly.
access::rw( values[new_n_nonzero]) = 0;
access::rw(row_indices[new_n_nonzero]) = 0;
access::rw(n_nonzero) = new_n_nonzero;
}
template<typename eT>
inline
void
SpMat<eT>::sync() const
{
arma_extra_debug_sigprint();
sync_csc();
}
template<typename eT>
inline
void
SpMat<eT>::remove_zeros()
{
arma_extra_debug_sigprint();
sync_csc();
invalidate_cache(); // placed here, as remove_zeros() is used during matrix modification
const uword old_n_nonzero = n_nonzero;
uword new_n_nonzero = 0;
const eT* old_values = values;
for(uword i=0; i < old_n_nonzero; ++i)
{
new_n_nonzero += (old_values[i] != eT(0)) ? uword(1) : uword(0);
}
if(new_n_nonzero != old_n_nonzero)
{
if(new_n_nonzero == 0) { init(n_rows, n_cols); return; }
SpMat<eT> tmp(arma_reserve_indicator(), n_rows, n_cols, new_n_nonzero);
uword new_index = 0;
const_iterator it = begin();
const_iterator it_end = end();
for(; it != it_end; ++it)
{
const eT val = eT(*it);
if(val != eT(0))
{
access::rw(tmp.values[new_index]) = val;
access::rw(tmp.row_indices[new_index]) = it.row();
access::rw(tmp.col_ptrs[it.col() + 1])++;
++new_index;
}
}
for(uword i=0; i < n_cols; ++i)
{
access::rw(tmp.col_ptrs[i + 1]) += tmp.col_ptrs[i];
}
steal_mem(tmp);
}
}
// Steal memory from another matrix.
template<typename eT>
inline
void
SpMat<eT>::steal_mem(SpMat<eT>& x)
{
arma_extra_debug_sigprint();
if(this == &x) { return; }
bool layout_ok = false;
if((*this).vec_state == x.vec_state)
{
layout_ok = true;
}
else
{
if( ((*this).vec_state == 1) && (x.n_cols == 1) ) { layout_ok = true; }
if( ((*this).vec_state == 2) && (x.n_rows == 1) ) { layout_ok = true; }
}
if(layout_ok)
{
x.sync_csc();
steal_mem_simple(x);
x.invalidate_cache();
invalidate_cache();
}
else
{
(*this).operator=(x);
}
}
template<typename eT>
inline
void
SpMat<eT>::steal_mem_simple(SpMat<eT>& x)
{
arma_extra_debug_sigprint();
if(this == &x) { return; }
if(values ) { memory::release(access::rw(values)); }
if(row_indices) { memory::release(access::rw(row_indices)); }
if(col_ptrs ) { memory::release(access::rw(col_ptrs)); }
access::rw(n_rows) = x.n_rows;
access::rw(n_cols) = x.n_cols;
access::rw(n_elem) = x.n_elem;
access::rw(n_nonzero) = x.n_nonzero;
access::rw(values) = x.values;
access::rw(row_indices) = x.row_indices;
access::rw(col_ptrs) = x.col_ptrs;
// Set other matrix to empty.
access::rw(x.n_rows) = 0;
access::rw(x.n_cols) = 0;
access::rw(x.n_elem) = 0;
access::rw(x.n_nonzero) = 0;
access::rw(x.values) = nullptr;
access::rw(x.row_indices) = nullptr;
access::rw(x.col_ptrs) = nullptr;
}
template<typename eT>
template<typename T1, typename Functor>
inline
void
SpMat<eT>::init_xform(const SpBase<eT,T1>& A, const Functor& func)
{
arma_extra_debug_sigprint();
// if possible, avoid doing a copy and instead apply func to the generated elements
if(SpProxy<T1>::Q_is_generated)
{
(*this) = A.get_ref();
const uword nnz = n_nonzero;
eT* t_values = access::rwp(values);
bool has_zero = false;
for(uword i=0; i < nnz; ++i)
{
eT& t_values_i = t_values[i];
t_values_i = func(t_values_i);
if(t_values_i == eT(0)) { has_zero = true; }
}
if(has_zero) { remove_zeros(); }
}
else
{
init_xform_mt(A.get_ref(), func);
}
}
template<typename eT>
template<typename eT2, typename T1, typename Functor>
inline
void
SpMat<eT>::init_xform_mt(const SpBase<eT2,T1>& A, const Functor& func)
{
arma_extra_debug_sigprint();
const SpProxy<T1> P(A.get_ref());
if( P.is_alias(*this) || (is_SpMat<typename SpProxy<T1>::stored_type>::value) )
{
// NOTE: unwrap_spmat will convert a submatrix to a matrix, which in effect takes care of aliasing with submatrices;
// NOTE: however, when more delayed ops are implemented, more elaborate handling of aliasing will be necessary
const unwrap_spmat<typename SpProxy<T1>::stored_type> tmp(P.Q);
const SpMat<eT2>& x = tmp.M;
if(void_ptr(this) != void_ptr(&x))
{
init(x.n_rows, x.n_cols, x.n_nonzero);
arrayops::copy(access::rwp(row_indices), x.row_indices, x.n_nonzero + 1);
arrayops::copy(access::rwp(col_ptrs), x.col_ptrs, x.n_cols + 1);
}
// initialise the elements array with a transformed version of the elements from x
const uword nnz = n_nonzero;
const eT2* x_values = x.values;
eT* t_values = access::rwp(values);
bool has_zero = false;
for(uword i=0; i < nnz; ++i)
{
eT& t_values_i = t_values[i];
t_values_i = func(x_values[i]); // NOTE: func() must produce a value of type eT (ie. act as a convertor between eT2 and eT)
if(t_values_i == eT(0)) { has_zero = true; }
}
if(has_zero) { remove_zeros(); }
}
else
{
init(P.get_n_rows(), P.get_n_cols(), P.get_n_nonzero());
typename SpProxy<T1>::const_iterator_type it = P.begin();
typename SpProxy<T1>::const_iterator_type it_end = P.end();
bool has_zero = false;
while(it != it_end)
{
const eT val = func(*it); // NOTE: func() must produce a value of type eT (ie. act as a convertor between eT2 and eT)
if(val == eT(0)) { has_zero = true; }
const uword it_pos = it.pos();
access::rw(row_indices[it_pos]) = it.row();
access::rw(values[it_pos]) = val;
++access::rw(col_ptrs[it.col() + 1]);
++it;
}
// Now sum column pointers.
for(uword c = 1; c <= n_cols; ++c)
{
access::rw(col_ptrs[c]) += col_ptrs[c - 1];
}
if(has_zero) { remove_zeros(); }
}
}
template<typename eT>
arma_inline
bool
SpMat<eT>::is_alias(const SpMat<eT>& X) const
{
return (&X == this);
}
template<typename eT>
inline
typename SpMat<eT>::iterator
SpMat<eT>::begin()
{
arma_extra_debug_sigprint();
sync_csc();
return iterator(*this);
}
template<typename eT>
inline
typename SpMat<eT>::const_iterator
SpMat<eT>::begin() const
{
arma_extra_debug_sigprint();
sync_csc();
return const_iterator(*this);
}
template<typename eT>
inline
typename SpMat<eT>::const_iterator
SpMat<eT>::cbegin() const
{
arma_extra_debug_sigprint();
sync_csc();
return const_iterator(*this);
}
template<typename eT>
inline
typename SpMat<eT>::iterator
SpMat<eT>::end()
{
sync_csc();
return iterator(*this, 0, n_cols, n_nonzero);
}
template<typename eT>
inline
typename SpMat<eT>::const_iterator
SpMat<eT>::end() const
{
sync_csc();
return const_iterator(*this, 0, n_cols, n_nonzero);
}
template<typename eT>
inline
typename SpMat<eT>::const_iterator
SpMat<eT>::cend() const
{
sync_csc();
return const_iterator(*this, 0, n_cols, n_nonzero);
}
template<typename eT>
inline
typename SpMat<eT>::col_iterator
SpMat<eT>::begin_col(const uword col_num)
{
sync_csc();
return col_iterator(*this, 0, col_num);
}
template<typename eT>
inline
typename SpMat<eT>::const_col_iterator
SpMat<eT>::begin_col(const uword col_num) const
{
sync_csc();
return const_col_iterator(*this, 0, col_num);
}
template<typename eT>
inline
typename SpMat<eT>::col_iterator
SpMat<eT>::begin_col_no_sync(const uword col_num)
{
return col_iterator(*this, 0, col_num);
}
template<typename eT>
inline
typename SpMat<eT>::const_col_iterator
SpMat<eT>::begin_col_no_sync(const uword col_num) const
{
return const_col_iterator(*this, 0, col_num);
}
template<typename eT>
inline
typename SpMat<eT>::col_iterator
SpMat<eT>::end_col(const uword col_num)
{
sync_csc();
return col_iterator(*this, 0, col_num + 1);
}
template<typename eT>
inline
typename SpMat<eT>::const_col_iterator
SpMat<eT>::end_col(const uword col_num) const
{
sync_csc();
return const_col_iterator(*this, 0, col_num + 1);
}
template<typename eT>
inline
typename SpMat<eT>::col_iterator
SpMat<eT>::end_col_no_sync(const uword col_num)
{
return col_iterator(*this, 0, col_num + 1);
}
template<typename eT>
inline
typename SpMat<eT>::const_col_iterator
SpMat<eT>::end_col_no_sync(const uword col_num) const
{
return const_col_iterator(*this, 0, col_num + 1);
}
template<typename eT>
inline
typename SpMat<eT>::row_iterator
SpMat<eT>::begin_row(const uword row_num)
{
sync_csc();
return row_iterator(*this, row_num, 0);
}
template<typename eT>
inline
typename SpMat<eT>::const_row_iterator
SpMat<eT>::begin_row(const uword row_num) const
{
sync_csc();
return const_row_iterator(*this, row_num, 0);
}
template<typename eT>
inline
typename SpMat<eT>::row_iterator
SpMat<eT>::end_row()
{
sync_csc();
return row_iterator(*this, n_nonzero);
}
template<typename eT>
inline
typename SpMat<eT>::const_row_iterator
SpMat<eT>::end_row() const
{
sync_csc();
return const_row_iterator(*this, n_nonzero);
}
template<typename eT>
inline
typename SpMat<eT>::row_iterator
SpMat<eT>::end_row(const uword row_num)
{
sync_csc();
return row_iterator(*this, row_num + 1, 0);
}
template<typename eT>
inline
typename SpMat<eT>::const_row_iterator
SpMat<eT>::end_row(const uword row_num) const
{
sync_csc();
return const_row_iterator(*this, row_num + 1, 0);
}
template<typename eT>
inline
typename SpMat<eT>::row_col_iterator
SpMat<eT>::begin_row_col()
{
sync_csc();
return begin();
}
template<typename eT>
inline
typename SpMat<eT>::const_row_col_iterator
SpMat<eT>::begin_row_col() const
{
sync_csc();
return begin();
}
template<typename eT>
inline typename SpMat<eT>::row_col_iterator
SpMat<eT>::end_row_col()
{
sync_csc();
return end();
}
template<typename eT>
inline
typename SpMat<eT>::const_row_col_iterator
SpMat<eT>::end_row_col() const
{
sync_csc();
return end();
}
template<typename eT>
inline
void
SpMat<eT>::clear()
{
(*this).reset();
}
template<typename eT>
inline
bool
SpMat<eT>::empty() const
{
return (n_elem == 0);
}
template<typename eT>
inline
uword
SpMat<eT>::size() const
{
return n_elem;
}
template<typename eT>
arma_inline
arma_warn_unused
SpMat_MapMat_val<eT>
SpMat<eT>::front()
{
arma_debug_check( (n_elem == 0), "SpMat::front(): matrix is empty" );
return SpMat_MapMat_val<eT>((*this), cache, 0, 0);
}
template<typename eT>
arma_inline
arma_warn_unused
eT
SpMat<eT>::front() const
{
arma_debug_check( (n_elem == 0), "SpMat::front(): matrix is empty" );
return get_value(0,0);
}
template<typename eT>
arma_inline
arma_warn_unused
SpMat_MapMat_val<eT>
SpMat<eT>::back()
{
arma_debug_check( (n_elem == 0), "SpMat::back(): matrix is empty" );
return SpMat_MapMat_val<eT>((*this), cache, n_rows-1, n_cols-1);
}
template<typename eT>
arma_inline
arma_warn_unused
eT
SpMat<eT>::back() const
{
arma_debug_check( (n_elem == 0), "SpMat::back(): matrix is empty" );
return get_value(n_rows-1, n_cols-1);
}
template<typename eT>
inline
arma_hot
arma_warn_unused
eT
SpMat<eT>::get_value(const uword i) const
{
const MapMat<eT>& const_cache = cache; // declare as const for clarity of intent
// get the element from the cache if it has more recent data than CSC
return (sync_state == 1) ? const_cache.operator[](i) : get_value_csc(i);
}
template<typename eT>
inline
arma_hot
arma_warn_unused
eT
SpMat<eT>::get_value(const uword in_row, const uword in_col) const
{
const MapMat<eT>& const_cache = cache; // declare as const for clarity of intent
// get the element from the cache if it has more recent data than CSC
return (sync_state == 1) ? const_cache.at(in_row, in_col) : get_value_csc(in_row, in_col);
}
template<typename eT>
inline
arma_hot
arma_warn_unused
eT
SpMat<eT>::get_value_csc(const uword i) const
{
// First convert to the actual location.
uword lcol = i / n_rows; // Integer division.
uword lrow = i % n_rows;
return get_value_csc(lrow, lcol);
}
template<typename eT>
inline
arma_hot
arma_warn_unused
const eT*
SpMat<eT>::find_value_csc(const uword in_row, const uword in_col) const
{
const uword col_offset = col_ptrs[in_col ];
const uword next_col_offset = col_ptrs[in_col + 1];
const uword* start_ptr = &row_indices[ col_offset];
const uword* end_ptr = &row_indices[next_col_offset];
const uword* pos_ptr = std::lower_bound(start_ptr, end_ptr, in_row); // binary search
if( (pos_ptr != end_ptr) && ((*pos_ptr) == in_row) )
{
const uword offset = uword(pos_ptr - start_ptr);
const uword index = offset + col_offset;
return &(values[index]);
}
return nullptr;
}
template<typename eT>
inline
arma_hot
arma_warn_unused
eT
SpMat<eT>::get_value_csc(const uword in_row, const uword in_col) const
{
const eT* val_ptr = find_value_csc(in_row, in_col);
return (val_ptr != nullptr) ? eT(*val_ptr) : eT(0);
}
template<typename eT>
inline
arma_hot
arma_warn_unused
bool
SpMat<eT>::try_set_value_csc(const uword in_row, const uword in_col, const eT in_val)
{
const eT* val_ptr = find_value_csc(in_row, in_col);
// element not found, ie. it's zero; fail if trying to set it to non-zero value
if(val_ptr == nullptr) { return (in_val == eT(0)); }
// fail if trying to erase an existing element
if(in_val == eT(0)) { return false; }
access::rw(*val_ptr) = in_val;
invalidate_cache();
return true;
}
template<typename eT>
inline
arma_hot
arma_warn_unused
bool
SpMat<eT>::try_add_value_csc(const uword in_row, const uword in_col, const eT in_val)
{
const eT* val_ptr = find_value_csc(in_row, in_col);
// element not found, ie. it's zero; fail if trying to add a non-zero value
if(val_ptr == nullptr) { return (in_val == eT(0)); }
const eT new_val = eT(*val_ptr) + in_val;
// fail if trying to erase an existing element
if(new_val == eT(0)) { return false; }
access::rw(*val_ptr) = new_val;
invalidate_cache();
return true;
}
template<typename eT>
inline
arma_hot
arma_warn_unused
bool
SpMat<eT>::try_sub_value_csc(const uword in_row, const uword in_col, const eT in_val)
{
const eT* val_ptr = find_value_csc(in_row, in_col);
// element not found, ie. it's zero; fail if trying to subtract a non-zero value
if(val_ptr == nullptr) { return (in_val == eT(0)); }
const eT new_val = eT(*val_ptr) - in_val;
// fail if trying to erase an existing element
if(new_val == eT(0)) { return false; }
access::rw(*val_ptr) = new_val;
invalidate_cache();
return true;
}
template<typename eT>
inline
arma_hot
arma_warn_unused
bool
SpMat<eT>::try_mul_value_csc(const uword in_row, const uword in_col, const eT in_val)
{
const eT* val_ptr = find_value_csc(in_row, in_col);
// element not found, ie. it's zero; succeed if given value is finite; zero multiplied by anything is zero, except for nan and inf
if(val_ptr == nullptr) { return arma_isfinite(in_val); }
const eT new_val = eT(*val_ptr) * in_val;
// fail if trying to erase an existing element
if(new_val == eT(0)) { return false; }
access::rw(*val_ptr) = new_val;
invalidate_cache();
return true;
}
template<typename eT>
inline
arma_hot
arma_warn_unused
bool
SpMat<eT>::try_div_value_csc(const uword in_row, const uword in_col, const eT in_val)
{
const eT* val_ptr = find_value_csc(in_row, in_col);
// element not found, ie. it's zero; succeed if given value is not zero and not nan; zero divided by anything is zero, except for zero and nan
if(val_ptr == nullptr) { return ((in_val != eT(0)) && (arma_isnan(in_val) == false)); }
const eT new_val = eT(*val_ptr) / in_val;
// fail if trying to erase an existing element
if(new_val == eT(0)) { return false; }
access::rw(*val_ptr) = new_val;
invalidate_cache();
return true;
}
/**
* Insert an element at the given position, and return a reference to it.
* The element will be set to 0, unless otherwise specified.
* If the element already exists, its value will be overwritten.
*/
template<typename eT>
inline
arma_warn_unused
eT&
SpMat<eT>::insert_element(const uword in_row, const uword in_col, const eT val)
{
arma_extra_debug_sigprint();
sync_csc();
invalidate_cache();
// We will assume the new element does not exist and begin the search for
// where to insert it. If we find that it already exists, we will then
// overwrite it.
uword colptr = col_ptrs[in_col ];
uword next_colptr = col_ptrs[in_col + 1];
uword pos = colptr; // The position in the matrix of this value.
if(colptr != next_colptr)
{
// There are other elements in this column, so we must find where this
// element will fit as compared to those.
while(pos < next_colptr && in_row > row_indices[pos])
{
pos++;
}
// We aren't inserting into the last position, so it is still possible
// that the element may exist.
if(pos != next_colptr && row_indices[pos] == in_row)
{
// It already exists. Then, just overwrite it.
access::rw(values[pos]) = val;
return access::rw(values[pos]);
}
}
//
// Element doesn't exist, so we have to insert it
//
// We have to update the rest of the column pointers.
for(uword i = in_col + 1; i < n_cols + 1; i++)
{
access::rw(col_ptrs[i])++; // We are only inserting one new element.
}
const uword old_n_nonzero = n_nonzero;
access::rw(n_nonzero)++; // Add to count of nonzero elements.
// Allocate larger memory.
eT* new_values = memory::acquire<eT> (n_nonzero + 1);
uword* new_row_indices = memory::acquire<uword>(n_nonzero + 1);
// Copy things over, before the new element.
if(pos > 0)
{
arrayops::copy(new_values, values, pos);
arrayops::copy(new_row_indices, row_indices, pos);
}
// Insert the new element.
new_values[pos] = val;
new_row_indices[pos] = in_row;
// Copy the rest of things over (including the extra element at the end).
arrayops::copy(new_values + pos + 1, values + pos, (old_n_nonzero - pos) + 1);
arrayops::copy(new_row_indices + pos + 1, row_indices + pos, (old_n_nonzero - pos) + 1);
// Assign new pointers.
if(values) { memory::release(access::rw(values)); }
if(row_indices) { memory::release(access::rw(row_indices)); }
access::rw(values) = new_values;
access::rw(row_indices) = new_row_indices;
return access::rw(values[pos]);
}
/**
* Delete an element at the given position.
*/
template<typename eT>
inline
void
SpMat<eT>::delete_element(const uword in_row, const uword in_col)
{
arma_extra_debug_sigprint();
sync_csc();
invalidate_cache();
// We assume the element exists (although... it may not) and look for its
// exact position. If it doesn't exist... well, we don't need to do anything.
uword colptr = col_ptrs[in_col];
uword next_colptr = col_ptrs[in_col + 1];
if(colptr != next_colptr)
{
// There's at least one element in this column.
// Let's see if we are one of them.
for(uword pos = colptr; pos < next_colptr; pos++)
{
if(in_row == row_indices[pos])
{
--access::rw(n_nonzero); // Remove one from the count of nonzero elements.
// Found it. Now remove it.
// Make new arrays.
eT* new_values = memory::acquire<eT> (n_nonzero + 1);
uword* new_row_indices = memory::acquire<uword>(n_nonzero + 1);
if(pos > 0)
{
arrayops::copy(new_values, values, pos);
arrayops::copy(new_row_indices, row_indices, pos);
}
arrayops::copy(new_values + pos, values + pos + 1, (n_nonzero - pos) + 1);
arrayops::copy(new_row_indices + pos, row_indices + pos + 1, (n_nonzero - pos) + 1);
if(values) { memory::release(access::rw(values)); }
if(row_indices) { memory::release(access::rw(row_indices)); }
access::rw(values) = new_values;
access::rw(row_indices) = new_row_indices;
// And lastly, update all the column pointers (decrement by one).
for(uword i = in_col + 1; i < n_cols + 1; i++)
{
--access::rw(col_ptrs[i]); // We only removed one element.
}
return; // There is nothing left to do.
}
}
}
return; // The element does not exist, so there's nothing for us to do.
}
template<typename eT>
arma_inline
void
SpMat<eT>::invalidate_cache() const
{
arma_extra_debug_sigprint();
if(sync_state == 0) { return; }
cache.reset();
sync_state = 0;
}
template<typename eT>
arma_inline
void
SpMat<eT>::invalidate_csc() const
{
arma_extra_debug_sigprint();
sync_state = 1;
}
template<typename eT>
inline
void
SpMat<eT>::sync_cache() const
{
arma_extra_debug_sigprint();
// using approach adapted from http://preshing.com/20130930/double-checked-locking-is-fixed-in-cpp11/
//
// OpenMP mode:
// sync_state uses atomic read/write, which has an implied flush;
// flush is also implicitly executed at the entrance and the exit of critical section;
// data races are prevented by the 'critical' directive
//
// C++11 mode:
// underlying type for sync_state is std::atomic<int>;
// reading and writing to sync_state uses std::memory_order_seq_cst which has an implied fence;
// data races are prevented via the mutex
#if defined(ARMA_USE_OPENMP)
{
if(sync_state == 0)
{
#pragma omp critical (arma_SpMat_cache)
{
sync_cache_simple();
}
}
}
#elif (!defined(ARMA_DONT_USE_STD_MUTEX))
{
if(sync_state == 0)
{
cache_mutex.lock();
sync_cache_simple();
cache_mutex.unlock();
}
}
#else
{
sync_cache_simple();
}
#endif
}
template<typename eT>
inline
void
SpMat<eT>::sync_cache_simple() const
{
arma_extra_debug_sigprint();
if(sync_state == 0)
{
cache = (*this);
sync_state = 2;
}
}
template<typename eT>
inline
void
SpMat<eT>::sync_csc() const
{
arma_extra_debug_sigprint();
#if defined(ARMA_USE_OPENMP)
if(sync_state == 1)
{
#pragma omp critical (arma_SpMat_cache)
{
sync_csc_simple();
}
}
#elif (!defined(ARMA_DONT_USE_STD_MUTEX))
if(sync_state == 1)
{
cache_mutex.lock();
sync_csc_simple();
cache_mutex.unlock();
}
#else
{
sync_csc_simple();
}
#endif
}
template<typename eT>
inline
void
SpMat<eT>::sync_csc_simple() const
{
arma_extra_debug_sigprint();
// method:
// 1. construct temporary matrix to prevent the cache from getting zapped
// 2. steal memory from the temporary matrix
// sync_state is only set to 1 by non-const element access operators,
// so the shenanigans with const_cast are to satisfy the compiler
// see also the note in sync_cache() above
if(sync_state == 1)
{
SpMat<eT>& x = const_cast< SpMat<eT>& >(*this);
SpMat<eT> tmp(cache);
x.steal_mem_simple(tmp);
sync_state = 2;
}
}
//
// SpMat_aux
template<typename eT, typename T1>
inline
void
SpMat_aux::set_real(SpMat<eT>& out, const SpBase<eT,T1>& X)
{
arma_extra_debug_sigprint();
const unwrap_spmat<T1> tmp(X.get_ref());
const SpMat<eT>& A = tmp.M;
arma_debug_assert_same_size( out, A, "SpMat::set_real()" );
out = A;
}
template<typename eT, typename T1>
inline
void
SpMat_aux::set_imag(SpMat<eT>&, const SpBase<eT,T1>&)
{
arma_extra_debug_sigprint();
}
template<typename T, typename T1>
inline
void
SpMat_aux::set_real(SpMat< std::complex<T> >& out, const SpBase<T,T1>& X)
{
arma_extra_debug_sigprint();
typedef typename std::complex<T> eT;
const unwrap_spmat<T1> U(X.get_ref());
const SpMat<T>& Y = U.M;
arma_debug_assert_same_size(out, Y, "SpMat::set_real()");
SpMat<eT> tmp(Y,arma::imag(out)); // arma:: prefix required due to bugs in GCC 4.4 - 4.6
out.steal_mem(tmp);
}
template<typename T, typename T1>
inline
void
SpMat_aux::set_imag(SpMat< std::complex<T> >& out, const SpBase<T,T1>& X)
{
arma_extra_debug_sigprint();
typedef typename std::complex<T> eT;
const unwrap_spmat<T1> U(X.get_ref());
const SpMat<T>& Y = U.M;
arma_debug_assert_same_size(out, Y, "SpMat::set_imag()");
SpMat<eT> tmp(arma::real(out),Y); // arma:: prefix required due to bugs in GCC 4.4 - 4.6
out.steal_mem(tmp);
}
#ifdef ARMA_EXTRA_SPMAT_MEAT
#include ARMA_INCFILE_WRAP(ARMA_EXTRA_SPMAT_MEAT)
#endif
//! @}
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