Daniel Russel d20f58e635 moving out of the way for version 2

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..

all_files.cpp

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makefile

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PDB_align.cpp

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PDB_Atom.cpp

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PDB_distance.cpp

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PDB_Error_logger.cpp

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PDB_Model.cpp

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PDB_pdb_utils.cpp

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PDB_PDB.cpp

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PDB_Protein_pdb.cpp

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PDB_Protein.cpp

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PDB_Quaternion.cpp

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PDB_Residue_data.cpp

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PDB_Residue.cpp

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PDB_Transform.cpp

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PDB_transforms.cpp

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