Added automatic binding generator script with basic template, updated/extended parser and added generated error and file listing
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#!/usr/bin/env python3
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#
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# Syntax: generate_docstrings.py <path_to_c++_header_files> <path_to_python_files>
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#
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# Extract documentation from C++ header files to use it in libiglPython bindings
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#
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import os, sys, glob
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import pickle
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import shutil
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from joblib import Parallel, delayed
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from multiprocessing import cpu_count
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from mako.template import Template
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from parser import parse
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# http://stackoverflow.com/questions/3207219/how-to-list-all-files-of-a-directory-in-python
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def get_filepaths(directory):
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"""
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This function will generate the file names in a directory
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tree by walking the tree either top-down or bottom-up. For each
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directory in the tree rooted at directory top (including top itself),
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it yields a 3-tuple (dirpath, dirnames, filenames).
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"""
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file_paths = [] # List which will store all of the full filepaths.
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# Walk the tree.
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for root, directories, files in os.walk(directory):
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for filename in files:
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# Join the two strings in order to form the full filepath.
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filepath = os.path.join(root, filename)
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file_paths.append(filepath) # Add it to the list.
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return file_paths # Self-explanatory.
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def get_name_from_path(path, basepath, prefix, postfix):
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f_clean = path[len(basepath):]
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f_clean = f_clean.replace(basepath, "")
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f_clean = f_clean.replace(postfix, "")
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f_clean = f_clean.replace(prefix, "")
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f_clean = f_clean.replace("/", "_")
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f_clean = f_clean.replace("\\", "_")
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f_clean = f_clean.replace(" ", "_")
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f_clean = f_clean.replace(".", "_")
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return f_clean
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def map_parameter_types(name, cpp_type, parsed_types, errors, enum_types):
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# TODO Replace with proper regex matching and derive types from templates, comment parsing, names in cpp files
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# CAUTION: This is work in progress mapping code to get a grip of the problem
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# Types to map
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# const int dim -> const int& dim ?
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result = []
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if cpp_type.startswith("const"):
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result.append("const ")
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cpp_type = cpp_type[6:] # Strip const part
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# Handle special types
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skip_parsing = False
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if cpp_type.startswith("MatY"):
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result.append("Eigen::SparseMatrix<double>&")
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skip_parsing = True
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if cpp_type == "std::vector<std::vector<Scalar> > &":
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result.append("std::vector<std::vector<double> > &")
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skip_parsing = True
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if cpp_type == "std::vector<std::vector<Index> > &":
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result.append("std::vector<std::vector<int> > &")
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skip_parsing = True
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for constant in enum_types:
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if cpp_type.endswith(constant):
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result.append(cpp_type)
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skip_parsing = True
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if len(parsed_types) == 0:
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errors.append("Empty typechain: %s" % cpp_type)
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if cpp_type == "int" or cpp_type == "bool":
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return cpp_type, True
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else:
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return cpp_type, False
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# print(parsed_types, cpp_type)
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if not skip_parsing:
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for i, t in enumerate(parsed_types):
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if t == "Eigen":
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result.append("Eigen::")
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continue
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if t == "std":
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result.append("std::")
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continue
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if t == "PlainObjectBase" or t == "MatrixBase":
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if name == "F":
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result.append("MatrixXi&")
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elif name == "V":
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result.append("MatrixXd&")
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else:
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result.append("MatrixXd&")
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break
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if t == "MatrixXi":
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result.append("MatrixXi&")
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break
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if t == "MatrixXd" or t == "VectorXd":
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result.append("MatrixXd&")
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break
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if t == "SparseMatrix" and len(parsed_types) >= i + 2 and (
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parsed_types[i + 1] == "Scalar" or parsed_types[i + 1] == "T"):
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result.append("SparseMatrix<double>&")
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break
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if t == "SparseVector" and len(parsed_types) >= i + 2 and (parsed_types[i + 1] == "Scalar" or parsed_types[
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i + 1] == "T"):
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result.append("SparseMatrix<double>&")
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break
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if t == "bool" or t == "int" or t == "double" or t == "unsigned" or t == "string":
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if cpp_type.endswith("&"):
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result.append(t + " &")
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else:
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result.append(t)
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break
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else:
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errors.append("Unknown typechain: %s" % cpp_type)
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return cpp_type, False
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return "".join(result), True
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if __name__ == '__main__':
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if len(sys.argv) != 2:
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print('Syntax: %s <path_to_c++_files>' % sys.argv[0])
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exit(-1)
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errors = {"missing": [], "empty": [], "others": [], "incorrect": [], "render": [], "various": []}
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files = {"complete": [], "partial": [], "errors": [], "others": [], "empty": []}
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# List all files in the given folder and subfolders
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cpp_base_path = sys.argv[1]
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cpp_file_paths = get_filepaths(cpp_base_path)
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# Add all the .h filepaths to a dict
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print("Collecting cpp files for parsing...")
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mapping = {}
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cppmapping = {}
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for f in cpp_file_paths:
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if f.endswith(".h"):
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name = get_name_from_path(f, cpp_base_path, "", ".h")
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mapping[name] = f
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if f.endswith(".cpp"):
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name = get_name_from_path(f, cpp_base_path, "", ".cpp")
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cppmapping[name] = f
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# Add all python binding files to a list
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implemented_names = list(mapping.keys()) # ["point_mesh_squared_distance"]
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implemented_names.sort()
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single_postfix = ""
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single_prefix = ""
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# Create a list of all cpp header files
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files_to_parse = []
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cppfiles_to_parse = []
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for n in implemented_names:
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files_to_parse.append(mapping[n])
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if n not in cppmapping:
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errors["missing"].append("No cpp source file for function %s found." % n)
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else:
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cppfiles_to_parse.append(cppmapping[n])
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# Parse c++ header files
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print("Parsing header files...")
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load_headers = False
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if load_headers:
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with open("headers.dat", 'rb') as fs:
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dicts = pickle.load(fs)
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else:
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job_count = cpu_count()
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dicts = Parallel(n_jobs=job_count)(delayed(parse)(path) for path in files_to_parse)
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if not load_headers:
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print("Saving parsed header files...")
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with open("headers.dat", 'wb') as fs:
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pickle.dump(dicts, fs)
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# Not yet needed, as explicit template parsing does not seem to be supported in clang
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# Parse c++ source files
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# cppdicts = Parallel(n_jobs=job_count)(delayed(parse)(path) for path in cppfiles_to_parse)
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# Change directory to become independent of execution directory
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print("Generating directory tree for binding files...")
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path = os.path.dirname(__file__)
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if path != "":
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os.chdir(path)
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shutil.rmtree("generated")
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os.makedirs("generated/complete")
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os.mkdir("generated/partial")
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print("Generating and writing binding files...")
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for idx, n in enumerate(implemented_names):
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d = dicts[idx]
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contained_elements = sum(map(lambda x: len(x), d.values()))
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# Skip files that don't contain functions/enums/classes
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if contained_elements == 0:
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errors["empty"].append("Function %s contains no parseable content in cpp header. Something might be wrong." % n)
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files["empty"].append(n)
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continue
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# Add functions with classes to others
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if len(d["classes"]) != 0 or len(d["structs"]) != 0:
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errors["others"].append("Function %s contains classes/structs in cpp header. Skipping" % n)
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files["others"].append(n)
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continue
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# Work on files that contain only functions/enums and namespaces
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if len(d["functions"]) + len(d["namespaces"]) + len(d["enums"]) == contained_elements:
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correct_functions = []
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incorrect_functions = []
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# Collect enums to generate binding files
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enums = []
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enum_types = []
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for e in d["enums"]:
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enums.append({"name": e.name, "namespaces": d["namespaces"], "constants": e.constants})
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enum_types.append(e.name)
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# Collect functions to generate binding files
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for f in d["functions"]:
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parameters = []
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correct_function = True
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f_errors = []
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for p in f.parameters:
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typ, correct = map_parameter_types(p[0], p[1], p[2], f_errors, enum_types)
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correct_function &= correct
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parameters.append({"name": p[0], "type": typ})
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if correct_function and len(parameters) > 0: #TODO add constants like EPS
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correct_functions.append({"parameters": parameters, "namespaces": d["namespaces"], "name": f.name})
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elif len(parameters) > 0:
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incorrect_functions.append({"parameters": parameters, "namespaces": d["namespaces"], "name": f.name})
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errors["incorrect"].append("Incorrect function in %s: %s, %s\n" % (n, f.name, ",".join(f_errors)))
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else:
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errors["various"].append("Function without pars in %s: %s, %s\n" % (n, f.name, ","
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"".join(f_errors)))
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# Write binding files
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try:
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tpl = Template(filename='basic_function.mako')
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rendered = tpl.render(functions=correct_functions, enums=enums)
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tpl1 = Template(filename='basic_function.mako')
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rendered1 = tpl.render(functions=incorrect_functions, enums=enums)
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path = "generated/"
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if len(incorrect_functions) == 0 and (len(correct_functions) != 0 or len(enums) != 0):
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path += "complete/"
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with open(path + single_prefix + "py_" + n + ".cpp", 'w') as fs:
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fs.write(rendered)
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files["complete"].append(n)
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else:
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path += "partial/"
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with open(path + single_prefix + "py_" + n + ".cpp", 'w') as fs:
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fs.write("// COMPLETE BINDINGS ========================\n")
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fs.write(rendered)
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fs.write("\n\n\n\n// INCOMPLETE BINDINGS ========================\n")
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fs.write(rendered1)
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if len(correct_functions) != 0:
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files["partial"].append(n)
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else:
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files["errors"].append(n)
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except Exception as e:
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files["errors"].append(n)
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errors["render"].append("Template rendering failed:" + n + " " + str(correct_functions) + ", incorrect "
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"functions are " + str(
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incorrect_functions) + str(e) + "\n")
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print("Writing error and overview files...")
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with open("errors.txt" + single_postfix, 'w') as fs:
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l = list(errors.keys())
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l.sort()
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for k in l:
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fs.write("%s: %i \n" %(k, len(errors[k])))
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fs.writelines("\n".join(errors[k]))
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fs.write("\n\n\n")
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with open("files.txt" + single_postfix, 'w') as fs:
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l = list(files.keys())
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l.sort()
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for k in l:
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fs.write("%s: %i \n" %(k, len(files[k])))
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fs.writelines("\n".join(files[k]))
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fs.write("\n\n\n")
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