Moved implementation from fem/bilininteg_ext.cpp into
fem/bilininteg_diffusion.cpp and fem/bilininteg_mass.cpp
Update the layouts used in the shared memory kernels.
Rename class ElemRestriction to ElementRestriction and integrate
it with class FiniteElementSpace; it is accessible with the method
FiniteElementSpace::GetElementRestriction().
Rename class XTMesh to GeometricFactors and remove invJ from the
possible geometric factors.
Introduce class QuadratureInterpolator (created and owned by class
FiniteElementSpace) that interpolates E-vectors to quadrature points,
see FiniteElementSpace::GetQuadratureInterpolator().
Switch the layouts of the E-vectors and Q-vectors to have the
local (element) DOFs and quadrature points, respectively, as the
fastest changing index.
and transfers.
The Memory class is now used by some MFEM classes (like Array and
Vector) which can be used on the Device. Such classes now provide
methods to access the underlying Memory object, e.g. GetMemory.
Updated ex1/ex1p and ex6/ex6p to not need to enable/disable the
Device at specific points -- the Device is now enabled just at the
start. Also, the same examples can now run on Device (e.g. -d cuda)
without the partial assembly option (-pa) -- full assembly will
be still done on CPU but the sparse matrix action and vector
operations will be done using the Device.
Reverted changes in class DenseMatrix related to using the Device.
At this point, DenseMatrix operations are only used for small matrices
and using the Device in this case is not a good option.
List of changes and additions:
* In class Mesh:
* Replaced the data fields BaseGeom, BaseBdrGeom, and BaseFaceGeom
with a new data field: mesh_geoms that is a bitwise mask for all
Geometry::Types found in the (local) Mesh including entities of
lower dimensions.
* The new data field mesh_geoms is set by the method SetMeshGen.
* Removed the (protected) method InitBaseGeom.
* Add new methods: HasGeometry, GetNumGeometries, and GetGeometries
that can be used to query the content of mesh_geoms. Also, added
class Mesh::GeometryList that can simplify such queries too.
* The methods GetFaceBaseGeometry, GetElementBaseGeometry, and
GetBdrElementBaseGeometry no longer have a default value for
their input parameter (the entity index) and accept only values
within their respective ranges.
* Removed the parameter of the method GetRefinementTransforms.
* Updated the methods PrepareNodeReorder and DoNodeReorder to
support mixed meshes.
* In parallel, the data field meshgen is now required to represent
information about the global mesh - updated relevant ParMesh
methods.
* Made any required changes outside of class Mesh due to the above
changes.
* Made various tweaks and improvements in the following methods:
CheckBdrElementOrientation, Mixed2DUniformRefinement,
Mixed3DUniformRefinement, UniformRefinement, and
GeneralRefinement.
* Updated the method PrintCharacteristics to print the types of
elements, boundary elements and faces used in the mesh.
* In the method ReadInlineMesh, replace remaining "pri" strings
with "wedge".
* In the mesh reader method ReadGmshMesh, recover the term "prism"
in the comments - it was replaced, unintentionally, I assume,
by "wedge".
* Add support for refinement of curvilinear mixed meshes:
* In class FiniteElementSpace, updated the methods:
GetLocalRefinementMatrices, GetLocalDerefinementMatrices,
RefinementMatrix, RefinementMatrix_main, as well as class
RefinementOperator to support mixed meshes.
* Add two new meshes: star-mixed-p2.mesh and fichera-mixed-p2.mesh
which represent examples of quadratic mixed meshes in 2D and 3D,
respectively.
* Add sample runs in ex1/ex1p using the new quadratic mixed meshes.
* In class Geometry:
* In the enumeration Type: removed the constant MIXED and added
new constant: NUM_GEOMETRIES.
* Add new static data field: DimStart[] that indexes the Types by
dimension: the Types of dimension 'd' are given by the range
[ DimStart[d], DimStart[d+1] ).
* In class ParNCMesh, added method GetGhostFaceGeometry that,
for now, returns Geometry::SQUARE.
* Update the return type of the method DofOrderForOrientation in
class FiniteElementCollection (and all derived classes) from
'int *' to 'const int *'.
* Removed the virtual method Element::GetRefinementFlag and made
the only relevant derived version (in class Tetrahedron),
non-virtual.
* In class Tetrahedron, added method Init.
* Added FIXME comments for some outstanding issues.
* In the mesh-explorer miniapp:
* Added option to enable or disable the 'refine' parameter when
reading a mesh from file.
* In the 'jitter' menu option, ask the user if the boundary
nodes should be moved or not.
* In the 'Print sub-element stats' menu option, count and print
bad/inverted elements by their Geometry::Type as well.
* Removed the fixed low-order finite element classes for wedges.
* Replace more cases of 'int' variables with 'Geometry::Type',
mainly in class FiniteElement and its derived classes.
* Use constants from BasisType (instead of Quadrature1D) in the
parameters of the *WedgeElement finite element classes.
* Impose ordering on the construction of some global objects by
moving them into the same translation unit: specifically, moved
the objects 'TriangleFE', 'TetrahedronFE', 'WedgeFE', and
'Geometries' into fem/fe.cpp.
* In switchs on 'Geometry::Type', move the 'Geometry::PRISM' case
last - just to follow the order in the enumeration.
* Add a new method CoarseFineTransformations::GetPointMatrices
that simplifies some code that uses CoarseFineTransformations.
* Removed the 'INVALID' and 'MIXED' constants from the enum
Element::Type.
* Remove the static method Element::GeometryType.
* Tweak some doxygen comments in the classes Embedding and
CoarseFineTransformations.
* Generate an error if the method Wedge::GetNFaces is called:
its parameter 'nFaceVertices' does not make sense for wedges.
GetTrueTransferOperator() which is similar to GetTransferOperator()
but it works with true-dof input and output vectors. Implemented the
new method both in serial and in parallel including support for
assembled transfer matrices (SparseMatrix in serial, HypreParMatrix
in parallel) as well as matrix-free transfer operators.
Add const qualifiers to the methods GetProlongationMatrix() and
GetRestrictionMatrix() in (Par)FiniteElementSpace.
Add const to the ParFiniteElementSpace constructor parameter in class
ConformingProlongationOperator.
Add a const version of ParFiniteElementSpace::GroupComm().
creates an Operator for transferring GridFunction data from one FE space
on a coarse mesh to another FE space on a refined mesh. This method only
supports the case where both spaces use the same FiniteElement::MapType.
The method can create either a SparseMatrix or a "matrix-free" Operator
of class FiniteElementSpace::RefinementOperator.
This method also works in parallel because the transfer operator is
local to the MPI task when the input is a synchronized ParGridFunction.
camierjs