// Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced // at the Lawrence Livermore National Laboratory. All Rights reserved. See files // LICENSE and NOTICE for details. LLNL-CODE-806117. // // This file is part of the MFEM library. For more information and source code // availability visit https://mfem.org. // // MFEM is free software; you can redistribute it and/or modify it under the // terms of the BSD-3 license. We welcome feedback and contributions, see file // CONTRIBUTING.md for details. #include "../config/config.hpp" #ifdef MFEM_USE_MPI #include "linalg.hpp" #include "../fem/fem.hpp" #include #include #include #include using namespace std; namespace mfem { template static TargetT *DuplicateAs(const SourceT *array, int size, bool cplusplus = true) { TargetT *target_array = cplusplus ? (TargetT*) Memory(size) /* */ : mfem_hypre_TAlloc(TargetT, size); for (int i = 0; i < size; i++) { target_array[i] = array[i]; } return target_array; } inline void HypreParVector::_SetDataAndSize_() { SetDataAndSize(hypre_VectorData(hypre_ParVectorLocalVector(x)), internal::to_int( hypre_VectorSize(hypre_ParVectorLocalVector(x)))); } HypreParVector::HypreParVector(MPI_Comm comm, HYPRE_Int glob_size, HYPRE_Int *col) : Vector() { x = hypre_ParVectorCreate(comm,glob_size,col); hypre_ParVectorInitialize(x); hypre_ParVectorSetPartitioningOwner(x,0); // The data will be destroyed by hypre (this is the default) hypre_ParVectorSetDataOwner(x,1); hypre_SeqVectorSetDataOwner(hypre_ParVectorLocalVector(x),1); _SetDataAndSize_(); own_ParVector = 1; } HypreParVector::HypreParVector(MPI_Comm comm, HYPRE_Int glob_size, double *_data, HYPRE_Int *col) : Vector() { x = hypre_ParVectorCreate(comm,glob_size,col); hypre_ParVectorSetDataOwner(x,1); // owns the seq vector hypre_SeqVectorSetDataOwner(hypre_ParVectorLocalVector(x),0); hypre_ParVectorSetPartitioningOwner(x,0); double tmp = 0.0; hypre_VectorData(hypre_ParVectorLocalVector(x)) = &tmp; // If hypre_ParVectorLocalVector(x) and &tmp are non-NULL, // hypre_ParVectorInitialize(x) does not allocate memory! hypre_ParVectorInitialize(x); // Set the internal data array to the one passed in hypre_VectorData(hypre_ParVectorLocalVector(x)) = _data; _SetDataAndSize_(); own_ParVector = 1; } HypreParVector::HypreParVector(const HypreParVector &y) : Vector() { x = hypre_ParVectorCreate(y.x -> comm, y.x -> global_size, y.x -> partitioning); hypre_ParVectorInitialize(x); hypre_ParVectorSetPartitioningOwner(x,0); hypre_ParVectorSetDataOwner(x,1); hypre_SeqVectorSetDataOwner(hypre_ParVectorLocalVector(x),1); _SetDataAndSize_(); own_ParVector = 1; } HypreParVector::HypreParVector(const HypreParMatrix &A, int transpose) : Vector() { if (!transpose) { x = hypre_ParVectorInDomainOf(const_cast(A)); } else { x = hypre_ParVectorInRangeOf(const_cast(A)); } _SetDataAndSize_(); own_ParVector = 1; } HypreParVector::HypreParVector(HYPRE_ParVector y) : Vector() { x = (hypre_ParVector *) y; _SetDataAndSize_(); own_ParVector = 0; } HypreParVector::HypreParVector(ParFiniteElementSpace *pfes) { x = hypre_ParVectorCreate(pfes->GetComm(), pfes->GlobalTrueVSize(), pfes->GetTrueDofOffsets()); hypre_ParVectorInitialize(x); hypre_ParVectorSetPartitioningOwner(x,0); // The data will be destroyed by hypre (this is the default) hypre_ParVectorSetDataOwner(x,1); hypre_SeqVectorSetDataOwner(hypre_ParVectorLocalVector(x),1); _SetDataAndSize_(); own_ParVector = 1; } Vector * HypreParVector::GlobalVector() const { hypre_Vector *hv = hypre_ParVectorToVectorAll(*this); Vector *v = new Vector(hv->data, internal::to_int(hv->size)); v->MakeDataOwner(); hypre_SeqVectorSetDataOwner(hv,0); hypre_SeqVectorDestroy(hv); return v; } HypreParVector& HypreParVector::operator=(double d) { Vector::operator=(d); return *this; } HypreParVector& HypreParVector::operator=(const HypreParVector &y) { #ifdef MFEM_DEBUG if (size != y.Size()) { mfem_error("HypreParVector::operator="); } #endif Vector::operator=(y); return *this; } void HypreParVector::SetData(double *_data) { hypre_VectorData(hypre_ParVectorLocalVector(x)) = _data; Vector::SetData(_data); } HYPRE_Int HypreParVector::Randomize(HYPRE_Int seed) { return hypre_ParVectorSetRandomValues(x,seed); } void HypreParVector::Print(const char *fname) const { hypre_ParVectorPrint(x,fname); } HypreParVector::~HypreParVector() { if (own_ParVector) { hypre_ParVectorDestroy(x); } } #ifdef MFEM_USE_SUNDIALS void HypreParVector::ToNVector(N_Vector &nv) { MFEM_ASSERT(nv && N_VGetVectorID(nv) == SUNDIALS_NVEC_PARHYP, "invalid N_Vector"); N_VectorContent_ParHyp nv_c = (N_VectorContent_ParHyp)(nv->content); MFEM_ASSERT(nv_c->own_parvector == SUNFALSE, "invalid N_Vector"); nv_c->local_length = x->local_vector->size; nv_c->global_length = x->global_size; nv_c->comm = x->comm; nv_c->x = x; } #endif // MFEM_USE_SUNDIALS double InnerProduct(HypreParVector *x, HypreParVector *y) { return hypre_ParVectorInnerProd(*x, *y); } double InnerProduct(HypreParVector &x, HypreParVector &y) { return hypre_ParVectorInnerProd(x, y); } double ParNormlp(const Vector &vec, double p, MPI_Comm comm) { double norm = 0.0; if (p == 1.0) { double loc_norm = vec.Norml1(); MPI_Allreduce(&loc_norm, &norm, 1, MPI_DOUBLE, MPI_SUM, comm); } if (p == 2.0) { double loc_norm = vec*vec; MPI_Allreduce(&loc_norm, &norm, 1, MPI_DOUBLE, MPI_SUM, comm); norm = sqrt(norm); } if (p < infinity()) { double sum = 0.0; for (int i = 0; i < vec.Size(); i++) { sum += pow(fabs(vec(i)), p); } MPI_Allreduce(&sum, &norm, 1, MPI_DOUBLE, MPI_SUM, comm); norm = pow(norm, 1.0/p); } else { double loc_norm = vec.Normlinf(); MPI_Allreduce(&loc_norm, &norm, 1, MPI_DOUBLE, MPI_MAX, comm); } return norm; } void HypreParMatrix::Init() { A = NULL; X = Y = NULL; diagOwner = offdOwner = colMapOwner = -1; ParCSROwner = 1; } HypreParMatrix::HypreParMatrix() { Init(); height = width = 0; } char HypreParMatrix::CopyCSR(SparseMatrix *csr, hypre_CSRMatrix *hypre_csr) { hypre_CSRMatrixData(hypre_csr) = csr->GetData(); #ifndef HYPRE_BIGINT hypre_CSRMatrixI(hypre_csr) = csr->GetI(); hypre_CSRMatrixJ(hypre_csr) = csr->GetJ(); // Prevent hypre from destroying hypre_csr->{i,j,data} return 0; #else hypre_CSRMatrixI(hypre_csr) = DuplicateAs(csr->GetI(), csr->Height()+1); hypre_CSRMatrixJ(hypre_csr) = DuplicateAs(csr->GetJ(), csr->NumNonZeroElems()); // Prevent hypre from destroying hypre_csr->{i,j,data}, own {i,j} return 1; #endif } char HypreParMatrix::CopyBoolCSR(Table *bool_csr, hypre_CSRMatrix *hypre_csr) { int nnz = bool_csr->Size_of_connections(); double *data = new double[nnz]; for (int i = 0; i < nnz; i++) { data[i] = 1.0; } hypre_CSRMatrixData(hypre_csr) = data; #ifndef HYPRE_BIGINT hypre_CSRMatrixI(hypre_csr) = bool_csr->GetI(); hypre_CSRMatrixJ(hypre_csr) = bool_csr->GetJ(); // Prevent hypre from destroying hypre_csr->{i,j,data}, own {data} return 2; #else hypre_CSRMatrixI(hypre_csr) = DuplicateAs(bool_csr->GetI(), bool_csr->Size()+1); hypre_CSRMatrixJ(hypre_csr) = DuplicateAs(bool_csr->GetJ(), nnz); // Prevent hypre from destroying hypre_csr->{i,j,data}, own {i,j,data} return 3; #endif } void HypreParMatrix::CopyCSR_J(hypre_CSRMatrix *hypre_csr, int *J) { HYPRE_Int nnz = hypre_CSRMatrixNumNonzeros(hypre_csr); for (HYPRE_Int j = 0; j < nnz; j++) { J[j] = int(hypre_CSRMatrixJ(hypre_csr)[j]); } } // Square block-diagonal constructor (4 arguments, v1) HypreParMatrix::HypreParMatrix(MPI_Comm comm, HYPRE_Int glob_size, HYPRE_Int *row_starts, SparseMatrix *diag) : Operator(diag->Height(), diag->Width()) { Init(); A = hypre_ParCSRMatrixCreate(comm, glob_size, glob_size, row_starts, row_starts, 0, diag->NumNonZeroElems(), 0); hypre_ParCSRMatrixSetDataOwner(A,1); hypre_ParCSRMatrixSetRowStartsOwner(A,0); hypre_ParCSRMatrixSetColStartsOwner(A,0); hypre_CSRMatrixSetDataOwner(A->diag,0); diagOwner = CopyCSR(diag, A->diag); hypre_CSRMatrixSetRownnz(A->diag); hypre_CSRMatrixSetDataOwner(A->offd,1); hypre_CSRMatrixI(A->offd) = mfem_hypre_CTAlloc(HYPRE_Int, diag->Height()+1); /* Don't need to call these, since they allocate memory only if it was not already allocated */ // hypre_CSRMatrixInitialize(A->diag); // hypre_ParCSRMatrixInitialize(A); hypre_ParCSRMatrixSetNumNonzeros(A); /* Make sure that the first entry in each row is the diagonal one. */ hypre_CSRMatrixReorder(hypre_ParCSRMatrixDiag(A)); #ifdef HYPRE_BIGINT CopyCSR_J(A->diag, diag->GetJ()); #endif hypre_MatvecCommPkgCreate(A); } // Rectangular block-diagonal constructor (6 arguments, v1) HypreParMatrix::HypreParMatrix(MPI_Comm comm, HYPRE_Int global_num_rows, HYPRE_Int global_num_cols, HYPRE_Int *row_starts, HYPRE_Int *col_starts, SparseMatrix *diag) : Operator(diag->Height(), diag->Width()) { Init(); A = hypre_ParCSRMatrixCreate(comm, global_num_rows, global_num_cols, row_starts, col_starts, 0, diag->NumNonZeroElems(), 0); hypre_ParCSRMatrixSetDataOwner(A,1); hypre_ParCSRMatrixSetRowStartsOwner(A,0); hypre_ParCSRMatrixSetColStartsOwner(A,0); hypre_CSRMatrixSetDataOwner(A->diag,0); diagOwner = CopyCSR(diag, A->diag); hypre_CSRMatrixSetRownnz(A->diag); hypre_CSRMatrixSetDataOwner(A->offd,1); hypre_CSRMatrixI(A->offd) = mfem_hypre_CTAlloc(HYPRE_Int, diag->Height()+1); hypre_ParCSRMatrixSetNumNonzeros(A); /* Make sure that the first entry in each row is the diagonal one. */ if (row_starts == col_starts) { hypre_CSRMatrixReorder(hypre_ParCSRMatrixDiag(A)); #ifdef HYPRE_BIGINT CopyCSR_J(A->diag, diag->GetJ()); #endif } hypre_MatvecCommPkgCreate(A); } // General rectangular constructor with diagonal and off-diagonal (8 arguments) HypreParMatrix::HypreParMatrix(MPI_Comm comm, HYPRE_Int global_num_rows, HYPRE_Int global_num_cols, HYPRE_Int *row_starts, HYPRE_Int *col_starts, SparseMatrix *diag, SparseMatrix *offd, HYPRE_Int *cmap) : Operator(diag->Height(), diag->Width()) { Init(); A = hypre_ParCSRMatrixCreate(comm, global_num_rows, global_num_cols, row_starts, col_starts, offd->Width(), diag->NumNonZeroElems(), offd->NumNonZeroElems()); hypre_ParCSRMatrixSetDataOwner(A,1); hypre_ParCSRMatrixSetRowStartsOwner(A,0); hypre_ParCSRMatrixSetColStartsOwner(A,0); hypre_CSRMatrixSetDataOwner(A->diag,0); diagOwner = CopyCSR(diag, A->diag); hypre_CSRMatrixSetRownnz(A->diag); hypre_CSRMatrixSetDataOwner(A->offd,0); offdOwner = CopyCSR(offd, A->offd); hypre_CSRMatrixSetRownnz(A->offd); hypre_ParCSRMatrixColMapOffd(A) = cmap; // Prevent hypre from destroying A->col_map_offd colMapOwner = 0; hypre_ParCSRMatrixSetNumNonzeros(A); /* Make sure that the first entry in each row is the diagonal one. */ if (row_starts == col_starts) { hypre_CSRMatrixReorder(hypre_ParCSRMatrixDiag(A)); #ifdef HYPRE_BIGINT CopyCSR_J(A->diag, diag->GetJ()); #endif } hypre_MatvecCommPkgCreate(A); } // General rectangular constructor with diagonal and off-diagonal (13 arguments) HypreParMatrix::HypreParMatrix( MPI_Comm comm, HYPRE_Int global_num_rows, HYPRE_Int global_num_cols, HYPRE_Int *row_starts, HYPRE_Int *col_starts, HYPRE_Int *diag_i, HYPRE_Int *diag_j, double *diag_data, HYPRE_Int *offd_i, HYPRE_Int *offd_j, double *offd_data, HYPRE_Int offd_num_cols, HYPRE_Int *offd_col_map) { Init(); A = hypre_ParCSRMatrixCreate(comm, global_num_rows, global_num_cols, row_starts, col_starts, offd_num_cols, 0, 0); hypre_ParCSRMatrixSetDataOwner(A,1); hypre_ParCSRMatrixSetRowStartsOwner(A,0); hypre_ParCSRMatrixSetColStartsOwner(A,0); HYPRE_Int local_num_rows = hypre_CSRMatrixNumRows(A->diag); hypre_CSRMatrixSetDataOwner(A->diag,0); hypre_CSRMatrixI(A->diag) = diag_i; hypre_CSRMatrixJ(A->diag) = diag_j; hypre_CSRMatrixData(A->diag) = diag_data; hypre_CSRMatrixNumNonzeros(A->diag) = diag_i[local_num_rows]; hypre_CSRMatrixSetRownnz(A->diag); // Prevent hypre from destroying A->diag->{i,j,data}, own A->diag->{i,j,data} diagOwner = 3; hypre_CSRMatrixSetDataOwner(A->offd,0); hypre_CSRMatrixI(A->offd) = offd_i; hypre_CSRMatrixJ(A->offd) = offd_j; hypre_CSRMatrixData(A->offd) = offd_data; hypre_CSRMatrixNumNonzeros(A->offd) = offd_i[local_num_rows]; hypre_CSRMatrixSetRownnz(A->offd); // Prevent hypre from destroying A->offd->{i,j,data}, own A->offd->{i,j,data} offdOwner = 3; hypre_ParCSRMatrixColMapOffd(A) = offd_col_map; // Prevent hypre from destroying A->col_map_offd, own A->col_map_offd colMapOwner = 1; hypre_ParCSRMatrixSetNumNonzeros(A); /* Make sure that the first entry in each row is the diagonal one. */ if (row_starts == col_starts) { hypre_CSRMatrixReorder(hypre_ParCSRMatrixDiag(A)); } hypre_MatvecCommPkgCreate(A); height = GetNumRows(); width = GetNumCols(); } // Constructor from a CSR matrix on rank 0 (4 arguments, v2) HypreParMatrix::HypreParMatrix(MPI_Comm comm, HYPRE_Int *row_starts, HYPRE_Int *col_starts, SparseMatrix *sm_a) { MFEM_ASSERT(sm_a != NULL, "invalid input"); MFEM_VERIFY(!HYPRE_AssumedPartitionCheck(), "this method can not be used with assumed partition"); Init(); hypre_CSRMatrix *csr_a; csr_a = hypre_CSRMatrixCreate(sm_a -> Height(), sm_a -> Width(), sm_a -> NumNonZeroElems()); hypre_CSRMatrixSetDataOwner(csr_a,0); CopyCSR(sm_a, csr_a); hypre_CSRMatrixSetRownnz(csr_a); A = hypre_CSRMatrixToParCSRMatrix(comm, csr_a, row_starts, col_starts); #ifdef HYPRE_BIGINT delete [] hypre_CSRMatrixI(csr_a); delete [] hypre_CSRMatrixJ(csr_a); #endif hypre_CSRMatrixI(csr_a) = NULL; hypre_CSRMatrixDestroy(csr_a); height = GetNumRows(); width = GetNumCols(); /* Make sure that the first entry in each row is the diagonal one. */ if (row_starts == col_starts) { hypre_CSRMatrixReorder(hypre_ParCSRMatrixDiag(A)); } hypre_MatvecCommPkgCreate(A); } // Boolean, rectangular, block-diagonal constructor (6 arguments, v2) HypreParMatrix::HypreParMatrix(MPI_Comm comm, HYPRE_Int global_num_rows, HYPRE_Int global_num_cols, HYPRE_Int *row_starts, HYPRE_Int *col_starts, Table *diag) { Init(); int nnz = diag->Size_of_connections(); A = hypre_ParCSRMatrixCreate(comm, global_num_rows, global_num_cols, row_starts, col_starts, 0, nnz, 0); hypre_ParCSRMatrixSetDataOwner(A,1); hypre_ParCSRMatrixSetRowStartsOwner(A,0); hypre_ParCSRMatrixSetColStartsOwner(A,0); hypre_CSRMatrixSetDataOwner(A->diag,0); diagOwner = CopyBoolCSR(diag, A->diag); hypre_CSRMatrixSetRownnz(A->diag); hypre_CSRMatrixSetDataOwner(A->offd,1); hypre_CSRMatrixI(A->offd) = mfem_hypre_CTAlloc(HYPRE_Int, diag->Size()+1); hypre_ParCSRMatrixSetNumNonzeros(A); /* Make sure that the first entry in each row is the diagonal one. */ if (row_starts == col_starts) { hypre_CSRMatrixReorder(hypre_ParCSRMatrixDiag(A)); #ifdef HYPRE_BIGINT CopyCSR_J(A->diag, diag->GetJ()); #endif } hypre_MatvecCommPkgCreate(A); height = GetNumRows(); width = GetNumCols(); } // Boolean, general rectangular constructor with diagonal and off-diagonal // (11 arguments) HypreParMatrix::HypreParMatrix(MPI_Comm comm, int id, int np, HYPRE_Int *row, HYPRE_Int *col, HYPRE_Int *i_diag, HYPRE_Int *j_diag, HYPRE_Int *i_offd, HYPRE_Int *j_offd, HYPRE_Int *cmap, HYPRE_Int cmap_size) { HYPRE_Int diag_nnz, offd_nnz; Init(); if (HYPRE_AssumedPartitionCheck()) { diag_nnz = i_diag[row[1]-row[0]]; offd_nnz = i_offd[row[1]-row[0]]; A = hypre_ParCSRMatrixCreate(comm, row[2], col[2], row, col, cmap_size, diag_nnz, offd_nnz); } else { diag_nnz = i_diag[row[id+1]-row[id]]; offd_nnz = i_offd[row[id+1]-row[id]]; A = hypre_ParCSRMatrixCreate(comm, row[np], col[np], row, col, cmap_size, diag_nnz, offd_nnz); } hypre_ParCSRMatrixSetDataOwner(A,1); hypre_ParCSRMatrixSetRowStartsOwner(A,0); hypre_ParCSRMatrixSetColStartsOwner(A,0); HYPRE_Int i; double *a_diag = Memory(diag_nnz); for (i = 0; i < diag_nnz; i++) { a_diag[i] = 1.0; } double *a_offd = Memory(offd_nnz); for (i = 0; i < offd_nnz; i++) { a_offd[i] = 1.0; } hypre_CSRMatrixSetDataOwner(A->diag,0); hypre_CSRMatrixI(A->diag) = i_diag; hypre_CSRMatrixJ(A->diag) = j_diag; hypre_CSRMatrixData(A->diag) = a_diag; hypre_CSRMatrixSetRownnz(A->diag); // Prevent hypre from destroying A->diag->{i,j,data}, own A->diag->{i,j,data} diagOwner = 3; hypre_CSRMatrixSetDataOwner(A->offd,0); hypre_CSRMatrixI(A->offd) = i_offd; hypre_CSRMatrixJ(A->offd) = j_offd; hypre_CSRMatrixData(A->offd) = a_offd; hypre_CSRMatrixSetRownnz(A->offd); // Prevent hypre from destroying A->offd->{i,j,data}, own A->offd->{i,j,data} offdOwner = 3; hypre_ParCSRMatrixColMapOffd(A) = cmap; // Prevent hypre from destroying A->col_map_offd, own A->col_map_offd colMapOwner = 1; hypre_ParCSRMatrixSetNumNonzeros(A); /* Make sure that the first entry in each row is the diagonal one. */ if (row == col) { hypre_CSRMatrixReorder(hypre_ParCSRMatrixDiag(A)); } hypre_MatvecCommPkgCreate(A); height = GetNumRows(); width = GetNumCols(); } // General rectangular constructor with diagonal and off-diagonal constructed // from a CSR matrix that contains both diagonal and off-diagonal blocks // (9 arguments) HypreParMatrix::HypreParMatrix(MPI_Comm comm, int nrows, HYPRE_Int glob_nrows, HYPRE_Int glob_ncols, int *I, HYPRE_Int *J, double *data, HYPRE_Int *rows, HYPRE_Int *cols) { Init(); // Determine partitioning size, and my column start and end int part_size; HYPRE_Int my_col_start, my_col_end; // my range: [my_col_start, my_col_end) if (HYPRE_AssumedPartitionCheck()) { part_size = 2; my_col_start = cols[0]; my_col_end = cols[1]; } else { int myid; MPI_Comm_rank(comm, &myid); MPI_Comm_size(comm, &part_size); part_size++; my_col_start = cols[myid]; my_col_end = cols[myid+1]; } // Copy in the row and column partitionings HYPRE_Int *row_starts, *col_starts; if (rows == cols) { row_starts = col_starts = mfem_hypre_TAlloc(HYPRE_Int, part_size); for (int i = 0; i < part_size; i++) { row_starts[i] = rows[i]; } } else { row_starts = mfem_hypre_TAlloc(HYPRE_Int, part_size); col_starts = mfem_hypre_TAlloc(HYPRE_Int, part_size); for (int i = 0; i < part_size; i++) { row_starts[i] = rows[i]; col_starts[i] = cols[i]; } } // Create a map for the off-diagonal indices - global to local. Count the // number of diagonal and off-diagonal entries. HYPRE_Int diag_nnz = 0, offd_nnz = 0, offd_num_cols = 0; map offd_map; for (HYPRE_Int j = 0, loc_nnz = I[nrows]; j < loc_nnz; j++) { HYPRE_Int glob_col = J[j]; if (my_col_start <= glob_col && glob_col < my_col_end) { diag_nnz++; } else { offd_map.insert(pair(glob_col, -1)); offd_nnz++; } } // count the number of columns in the off-diagonal and set the local indices for (map::iterator it = offd_map.begin(); it != offd_map.end(); ++it) { it->second = offd_num_cols++; } // construct the global ParCSR matrix A = hypre_ParCSRMatrixCreate(comm, glob_nrows, glob_ncols, row_starts, col_starts, offd_num_cols, diag_nnz, offd_nnz); hypre_ParCSRMatrixInitialize(A); HYPRE_Int *diag_i, *diag_j, *offd_i, *offd_j, *offd_col_map; double *diag_data, *offd_data; diag_i = A->diag->i; diag_j = A->diag->j; diag_data = A->diag->data; offd_i = A->offd->i; offd_j = A->offd->j; offd_data = A->offd->data; offd_col_map = A->col_map_offd; diag_nnz = offd_nnz = 0; for (HYPRE_Int i = 0, j = 0; i < nrows; i++) { diag_i[i] = diag_nnz; offd_i[i] = offd_nnz; for (HYPRE_Int j_end = I[i+1]; j < j_end; j++) { HYPRE_Int glob_col = J[j]; if (my_col_start <= glob_col && glob_col < my_col_end) { diag_j[diag_nnz] = glob_col - my_col_start; diag_data[diag_nnz] = data[j]; diag_nnz++; } else { offd_j[offd_nnz] = offd_map[glob_col]; offd_data[offd_nnz] = data[j]; offd_nnz++; } } } diag_i[nrows] = diag_nnz; offd_i[nrows] = offd_nnz; for (map::iterator it = offd_map.begin(); it != offd_map.end(); ++it) { offd_col_map[it->second] = it->first; } hypre_ParCSRMatrixSetNumNonzeros(A); /* Make sure that the first entry in each row is the diagonal one. */ if (row_starts == col_starts) { hypre_CSRMatrixReorder(hypre_ParCSRMatrixDiag(A)); } hypre_MatvecCommPkgCreate(A); height = GetNumRows(); width = GetNumCols(); } HypreParMatrix::HypreParMatrix(const HypreParMatrix &P) { hypre_ParCSRMatrix *Ph = static_cast(P); Init(); // Clone the structure A = hypre_ParCSRMatrixCompleteClone(Ph); // Make a deep copy of the data from the source hypre_ParCSRMatrixCopy(Ph, A, 1); height = GetNumRows(); width = GetNumCols(); CopyRowStarts(); CopyColStarts(); hypre_ParCSRMatrixSetNumNonzeros(A); hypre_MatvecCommPkgCreate(A); } void HypreParMatrix::MakeRef(const HypreParMatrix &master) { Destroy(); Init(); A = master.A; ParCSROwner = 0; height = master.GetNumRows(); width = master.GetNumCols(); } hypre_ParCSRMatrix* HypreParMatrix::StealData() { // Only safe when (diagOwner == -1 && offdOwner == -1 && colMapOwner == -1) // Otherwise, there may be memory leaks or hypre may destroy arrays allocated // with operator new. MFEM_ASSERT(diagOwner == -1 && offdOwner == -1 && colMapOwner == -1, ""); MFEM_ASSERT(ParCSROwner, ""); hypre_ParCSRMatrix *R = A; A = NULL; Destroy(); Init(); return R; } void HypreParMatrix::CopyRowStarts() { if (!A || hypre_ParCSRMatrixOwnsRowStarts(A) || (hypre_ParCSRMatrixRowStarts(A) == hypre_ParCSRMatrixColStarts(A) && hypre_ParCSRMatrixOwnsColStarts(A))) { return; } int row_starts_size; if (HYPRE_AssumedPartitionCheck()) { row_starts_size = 2; } else { MPI_Comm_size(hypre_ParCSRMatrixComm(A), &row_starts_size); row_starts_size++; // num_proc + 1 } HYPRE_Int *old_row_starts = hypre_ParCSRMatrixRowStarts(A); HYPRE_Int *new_row_starts = mfem_hypre_CTAlloc(HYPRE_Int, row_starts_size); for (int i = 0; i < row_starts_size; i++) { new_row_starts[i] = old_row_starts[i]; } hypre_ParCSRMatrixRowStarts(A) = new_row_starts; hypre_ParCSRMatrixOwnsRowStarts(A) = 1; if (hypre_ParCSRMatrixColStarts(A) == old_row_starts) { hypre_ParCSRMatrixColStarts(A) = new_row_starts; hypre_ParCSRMatrixOwnsColStarts(A) = 0; } } void HypreParMatrix::CopyColStarts() { if (!A || hypre_ParCSRMatrixOwnsColStarts(A) || (hypre_ParCSRMatrixRowStarts(A) == hypre_ParCSRMatrixColStarts(A) && hypre_ParCSRMatrixOwnsRowStarts(A))) { return; } int col_starts_size; if (HYPRE_AssumedPartitionCheck()) { col_starts_size = 2; } else { MPI_Comm_size(hypre_ParCSRMatrixComm(A), &col_starts_size); col_starts_size++; // num_proc + 1 } HYPRE_Int *old_col_starts = hypre_ParCSRMatrixColStarts(A); HYPRE_Int *new_col_starts = mfem_hypre_CTAlloc(HYPRE_Int, col_starts_size); for (int i = 0; i < col_starts_size; i++) { new_col_starts[i] = old_col_starts[i]; } hypre_ParCSRMatrixColStarts(A) = new_col_starts; if (hypre_ParCSRMatrixRowStarts(A) == old_col_starts) { hypre_ParCSRMatrixRowStarts(A) = new_col_starts; hypre_ParCSRMatrixOwnsRowStarts(A) = 1; hypre_ParCSRMatrixOwnsColStarts(A) = 0; } else { hypre_ParCSRMatrixOwnsColStarts(A) = 1; } } void HypreParMatrix::GetDiag(Vector &diag) const { int size = Height(); diag.SetSize(size); for (int j = 0; j < size; j++) { diag(j) = A->diag->data[A->diag->i[j]]; MFEM_ASSERT(A->diag->j[A->diag->i[j]] == j, "the first entry in each row must be the diagonal one"); } } static void MakeWrapper(const hypre_CSRMatrix *mat, SparseMatrix &wrapper) { HYPRE_Int nr = hypre_CSRMatrixNumRows(mat); HYPRE_Int nc = hypre_CSRMatrixNumCols(mat); #ifndef HYPRE_BIGINT SparseMatrix tmp(hypre_CSRMatrixI(mat), hypre_CSRMatrixJ(mat), hypre_CSRMatrixData(mat), nr, nc, false, false, false); #else HYPRE_Int nnz = hypre_CSRMatrixNumNonzeros(mat); SparseMatrix tmp(DuplicateAs(hypre_CSRMatrixI(mat), nr+1), DuplicateAs(hypre_CSRMatrixJ(mat), nnz), hypre_CSRMatrixData(mat), nr, nc, true, false, false); #endif wrapper.Swap(tmp); } void HypreParMatrix::GetDiag(SparseMatrix &diag) const { MakeWrapper(A->diag, diag); } void HypreParMatrix::GetOffd(SparseMatrix &offd, HYPRE_Int* &cmap) const { MakeWrapper(A->offd, offd); cmap = A->col_map_offd; } void HypreParMatrix::GetBlocks(Array2D &blocks, bool interleaved_rows, bool interleaved_cols) const { int nr = blocks.NumRows(); int nc = blocks.NumCols(); hypre_ParCSRMatrix **hypre_blocks = new hypre_ParCSRMatrix*[nr * nc]; internal::hypre_ParCSRMatrixSplit(A, nr, nc, hypre_blocks, interleaved_rows, interleaved_cols); for (int i = 0; i < nr; i++) { for (int j = 0; j < nc; j++) { blocks[i][j] = new HypreParMatrix(hypre_blocks[i*nc + j]); } } delete [] hypre_blocks; } HypreParMatrix * HypreParMatrix::Transpose() const { hypre_ParCSRMatrix * At; hypre_ParCSRMatrixTranspose(A, &At, 1); hypre_ParCSRMatrixSetNumNonzeros(At); hypre_MatvecCommPkgCreate(At); if ( M() == N() ) { /* If the matrix is square, make sure that the first entry in each row is the diagonal one. */ hypre_CSRMatrixReorder(hypre_ParCSRMatrixDiag(At)); } return new HypreParMatrix(At); } HYPRE_Int HypreParMatrix::Mult(HypreParVector &x, HypreParVector &y, double a, double b) { x.HostRead(); (b == 0.0) ? y.HostWrite() : y.HostReadWrite(); return hypre_ParCSRMatrixMatvec(a, A, x, b, y); } void HypreParMatrix::Mult(double a, const Vector &x, double b, Vector &y) const { MFEM_ASSERT(x.Size() == Width(), "invalid x.Size() = " << x.Size() << ", expected size = " << Width()); MFEM_ASSERT(y.Size() == Height(), "invalid y.Size() = " << y.Size() << ", expected size = " << Height()); auto x_data = x.HostRead(); auto y_data = (b == 0.0) ? y.HostWrite() : y.HostReadWrite(); if (X == NULL) { X = new HypreParVector(A->comm, GetGlobalNumCols(), const_cast(x_data), GetColStarts()); Y = new HypreParVector(A->comm, GetGlobalNumRows(), y_data, GetRowStarts()); } else { X->SetData(const_cast(x_data)); Y->SetData(y_data); } hypre_ParCSRMatrixMatvec(a, A, *X, b, *Y); } void HypreParMatrix::MultTranspose(double a, const Vector &x, double b, Vector &y) const { MFEM_ASSERT(x.Size() == Height(), "invalid x.Size() = " << x.Size() << ", expected size = " << Height()); MFEM_ASSERT(y.Size() == Width(), "invalid y.Size() = " << y.Size() << ", expected size = " << Width()); // Note: x has the dimensions of Y (height), and // y has the dimensions of X (width) auto x_data = x.HostRead(); auto y_data = (b == 0.0) ? y.HostWrite() : y.HostReadWrite(); if (X == NULL) { X = new HypreParVector(A->comm, GetGlobalNumCols(), y_data, GetColStarts()); Y = new HypreParVector(A->comm, GetGlobalNumRows(), const_cast(x_data), GetRowStarts()); } else { X->SetData(y_data); Y->SetData(const_cast(x_data)); } hypre_ParCSRMatrixMatvecT(a, A, *Y, b, *X); } HYPRE_Int HypreParMatrix::Mult(HYPRE_ParVector x, HYPRE_ParVector y, double a, double b) { return hypre_ParCSRMatrixMatvec(a, A, (hypre_ParVector *) x, b, (hypre_ParVector *) y); } HYPRE_Int HypreParMatrix::MultTranspose(HypreParVector & x, HypreParVector & y, double a, double b) { return hypre_ParCSRMatrixMatvecT(a, A, x, b, y); } HypreParMatrix* HypreParMatrix::LeftDiagMult(const SparseMatrix &D, HYPRE_Int* row_starts) const { const bool assumed_partition = HYPRE_AssumedPartitionCheck(); const bool row_starts_given = (row_starts != NULL); if (!row_starts_given) { row_starts = hypre_ParCSRMatrixRowStarts(A); MFEM_VERIFY(D.Height() == hypre_CSRMatrixNumRows(A->diag), "the matrix D is NOT compatible with the row starts of" " this HypreParMatrix, row_starts must be given."); } else { int offset; if (assumed_partition) { offset = 0; } else { MPI_Comm_rank(GetComm(), &offset); } int local_num_rows = row_starts[offset+1]-row_starts[offset]; MFEM_VERIFY(local_num_rows == D.Height(), "the number of rows in D is " " not compatible with the given row_starts"); } // D.Width() will be checked for compatibility by the SparseMatrix // multiplication function, mfem::Mult(), called below. int part_size; HYPRE_Int global_num_rows; if (assumed_partition) { part_size = 2; if (row_starts_given) { global_num_rows = row_starts[2]; // Here, we use row_starts[2], so row_starts must come from the // methods GetDofOffsets/GetTrueDofOffsets of ParFiniteElementSpace // (HYPRE's partitions have only 2 entries). } else { global_num_rows = hypre_ParCSRMatrixGlobalNumRows(A); } } else { MPI_Comm_size(GetComm(), &part_size); global_num_rows = row_starts[part_size]; part_size++; } HYPRE_Int *col_starts = hypre_ParCSRMatrixColStarts(A); HYPRE_Int *col_map_offd; // get the diag and offd blocks as SparseMatrix wrappers SparseMatrix A_diag, A_offd; GetDiag(A_diag); GetOffd(A_offd, col_map_offd); // multiply the blocks with D and create a new HypreParMatrix SparseMatrix* DA_diag = mfem::Mult(D, A_diag); SparseMatrix* DA_offd = mfem::Mult(D, A_offd); HypreParMatrix* DA = new HypreParMatrix(GetComm(), global_num_rows, hypre_ParCSRMatrixGlobalNumCols(A), DuplicateAs(row_starts, part_size, false), DuplicateAs(col_starts, part_size, false), DA_diag, DA_offd, DuplicateAs(col_map_offd, A_offd.Width())); // When HYPRE_BIGINT is defined, we want DA_{diag,offd} to delete their I and // J arrays but not their data arrays; when HYPRE_BIGINT is not defined, we // don't want DA_{diag,offd} to delete anything. #ifndef HYPRE_BIGINT DA_diag->LoseData(); DA_offd->LoseData(); #else DA_diag->SetDataOwner(false); DA_offd->SetDataOwner(false); #endif delete DA_diag; delete DA_offd; hypre_ParCSRMatrixSetRowStartsOwner(DA->A, 1); hypre_ParCSRMatrixSetColStartsOwner(DA->A, 1); DA->diagOwner = DA->offdOwner = 3; DA->colMapOwner = 1; return DA; } void HypreParMatrix::ScaleRows(const Vector &diag) { if (hypre_CSRMatrixNumRows(A->diag) != hypre_CSRMatrixNumRows(A->offd)) { mfem_error("Row does not match"); } if (hypre_CSRMatrixNumRows(A->diag) != diag.Size()) { mfem_error("Note the Vector diag is not of compatible dimensions with A\n"); } int size = Height(); double *Adiag_data = hypre_CSRMatrixData(A->diag); HYPRE_Int *Adiag_i = hypre_CSRMatrixI(A->diag); double *Aoffd_data = hypre_CSRMatrixData(A->offd); HYPRE_Int *Aoffd_i = hypre_CSRMatrixI(A->offd); double val; HYPRE_Int jj; for (int i(0); i < size; ++i) { val = diag[i]; for (jj = Adiag_i[i]; jj < Adiag_i[i+1]; ++jj) { Adiag_data[jj] *= val; } for (jj = Aoffd_i[i]; jj < Aoffd_i[i+1]; ++jj) { Aoffd_data[jj] *= val; } } } void HypreParMatrix::InvScaleRows(const Vector &diag) { if (hypre_CSRMatrixNumRows(A->diag) != hypre_CSRMatrixNumRows(A->offd)) { mfem_error("Row does not match"); } if (hypre_CSRMatrixNumRows(A->diag) != diag.Size()) { mfem_error("Note the Vector diag is not of compatible dimensions with A\n"); } int size = Height(); double *Adiag_data = hypre_CSRMatrixData(A->diag); HYPRE_Int *Adiag_i = hypre_CSRMatrixI(A->diag); double *Aoffd_data = hypre_CSRMatrixData(A->offd); HYPRE_Int *Aoffd_i = hypre_CSRMatrixI(A->offd); double val; HYPRE_Int jj; for (int i(0); i < size; ++i) { #ifdef MFEM_DEBUG if (0.0 == diag(i)) { mfem_error("HypreParMatrix::InvDiagScale : Division by 0"); } #endif val = 1./diag(i); for (jj = Adiag_i[i]; jj < Adiag_i[i+1]; ++jj) { Adiag_data[jj] *= val; } for (jj = Aoffd_i[i]; jj < Aoffd_i[i+1]; ++jj) { Aoffd_data[jj] *= val; } } } void HypreParMatrix::operator*=(double s) { if (hypre_CSRMatrixNumRows(A->diag) != hypre_CSRMatrixNumRows(A->offd)) { mfem_error("Row does not match"); } HYPRE_Int size=hypre_CSRMatrixNumRows(A->diag); HYPRE_Int jj; double *Adiag_data = hypre_CSRMatrixData(A->diag); HYPRE_Int *Adiag_i = hypre_CSRMatrixI(A->diag); for (jj = 0; jj < Adiag_i[size]; ++jj) { Adiag_data[jj] *= s; } double *Aoffd_data = hypre_CSRMatrixData(A->offd); HYPRE_Int *Aoffd_i = hypre_CSRMatrixI(A->offd); for (jj = 0; jj < Aoffd_i[size]; ++jj) { Aoffd_data[jj] *= s; } } static void get_sorted_rows_cols(const Array &rows_cols, Array &hypre_sorted) { hypre_sorted.SetSize(rows_cols.Size()); bool sorted = true; for (int i = 0; i < rows_cols.Size(); i++) { hypre_sorted[i] = rows_cols[i]; if (i && rows_cols[i-1] > rows_cols[i]) { sorted = false; } } if (!sorted) { hypre_sorted.Sort(); } } void HypreParMatrix::Threshold(double threshold) { int ierr = 0; MPI_Comm comm; hypre_CSRMatrix * csr_A; hypre_CSRMatrix * csr_A_wo_z; hypre_ParCSRMatrix * parcsr_A_ptr; HYPRE_Int * row_starts = NULL; HYPRE_Int * col_starts = NULL; HYPRE_Int row_start = -1; HYPRE_Int row_end = -1; HYPRE_Int col_start = -1; HYPRE_Int col_end = -1; comm = hypre_ParCSRMatrixComm(A); ierr += hypre_ParCSRMatrixGetLocalRange(A, &row_start,&row_end, &col_start,&col_end ); row_starts = hypre_ParCSRMatrixRowStarts(A); col_starts = hypre_ParCSRMatrixColStarts(A); bool old_owns_row = hypre_ParCSRMatrixOwnsRowStarts(A); bool old_owns_col = hypre_ParCSRMatrixOwnsColStarts(A); HYPRE_Int global_num_rows = hypre_ParCSRMatrixGlobalNumRows(A); HYPRE_Int global_num_cols = hypre_ParCSRMatrixGlobalNumCols(A); parcsr_A_ptr = hypre_ParCSRMatrixCreate(comm, global_num_rows, global_num_cols, row_starts, col_starts, 0, 0, 0); hypre_ParCSRMatrixOwnsRowStarts(parcsr_A_ptr) = old_owns_row; hypre_ParCSRMatrixOwnsColStarts(parcsr_A_ptr) = old_owns_col; hypre_ParCSRMatrixOwnsRowStarts(A) = 0; hypre_ParCSRMatrixOwnsColStarts(A) = 0; csr_A = hypre_MergeDiagAndOffd(A); // Free A, if owned Destroy(); Init(); csr_A_wo_z = hypre_CSRMatrixDeleteZeros(csr_A,threshold); /* hypre_CSRMatrixDeleteZeros will return a NULL pointer rather than a usable CSR matrix if it finds no non-zeros */ if (csr_A_wo_z == NULL) { csr_A_wo_z = csr_A; } else { ierr += hypre_CSRMatrixDestroy(csr_A); } /* TODO: GenerateDiagAndOffd() uses an int array of size equal to the number of columns in csr_A_wo_z which is the global number of columns in A. This does not scale well. */ ierr += GenerateDiagAndOffd(csr_A_wo_z,parcsr_A_ptr, col_start,col_end); ierr += hypre_CSRMatrixDestroy(csr_A_wo_z); MFEM_VERIFY(ierr == 0, ""); A = parcsr_A_ptr; hypre_ParCSRMatrixSetNumNonzeros(A); /* Make sure that the first entry in each row is the diagonal one. */ if (row_starts == col_starts) { hypre_CSRMatrixReorder(hypre_ParCSRMatrixDiag(A)); } hypre_MatvecCommPkgCreate(A); height = GetNumRows(); width = GetNumCols(); } void HypreParMatrix::EliminateRowsCols(const Array &rows_cols, const HypreParVector &X, HypreParVector &B) { Array rc_sorted; get_sorted_rows_cols(rows_cols, rc_sorted); internal::hypre_ParCSRMatrixEliminateAXB( A, rc_sorted.Size(), rc_sorted.GetData(), X, B); } HypreParMatrix* HypreParMatrix::EliminateRowsCols(const Array &rows_cols) { Array rc_sorted; get_sorted_rows_cols(rows_cols, rc_sorted); hypre_ParCSRMatrix* Ae; internal::hypre_ParCSRMatrixEliminateAAe( A, &Ae, rc_sorted.Size(), rc_sorted.GetData()); return new HypreParMatrix(Ae); } HypreParMatrix* HypreParMatrix::EliminateCols(const Array &cols) { Array rc_sorted; get_sorted_rows_cols(cols, rc_sorted); hypre_ParCSRMatrix* Ae; internal::hypre_ParCSRMatrixEliminateAAe( A, &Ae, rc_sorted.Size(), rc_sorted.GetData(), 1); return new HypreParMatrix(Ae); } void HypreParMatrix::EliminateRows(const Array &rows) { if (rows.Size() > 0) { Array r_sorted; get_sorted_rows_cols(rows, r_sorted); internal::hypre_ParCSRMatrixEliminateRows(A, r_sorted.Size(), r_sorted.GetData()); } } void HypreParMatrix::Print(const char *fname, HYPRE_Int offi, HYPRE_Int offj) { hypre_ParCSRMatrixPrintIJ(A,offi,offj,fname); } void HypreParMatrix::Read(MPI_Comm comm, const char *fname) { Destroy(); Init(); HYPRE_Int base_i, base_j; hypre_ParCSRMatrixReadIJ(comm, fname, &base_i, &base_j, &A); hypre_ParCSRMatrixSetNumNonzeros(A); hypre_MatvecCommPkgCreate(A); height = GetNumRows(); width = GetNumCols(); } void HypreParMatrix::Read_IJMatrix(MPI_Comm comm, const char *fname) { Destroy(); Init(); HYPRE_IJMatrix A_ij; HYPRE_IJMatrixRead(fname, comm, 5555, &A_ij); // HYPRE_PARCSR = 5555 HYPRE_ParCSRMatrix A_parcsr; HYPRE_IJMatrixGetObject(A_ij, (void**) &A_parcsr); A = (hypre_ParCSRMatrix*)A_parcsr; hypre_ParCSRMatrixSetNumNonzeros(A); hypre_MatvecCommPkgCreate(A); height = GetNumRows(); width = GetNumCols(); } void HypreParMatrix::PrintCommPkg(std::ostream &out) const { hypre_ParCSRCommPkg *comm_pkg = A->comm_pkg; MPI_Comm comm = A->comm; char c = '\0'; const int tag = 46801; int myid, nproc; MPI_Comm_rank(comm, &myid); MPI_Comm_size(comm, &nproc); if (myid != 0) { MPI_Recv(&c, 1, MPI_CHAR, myid-1, tag, comm, MPI_STATUS_IGNORE); } else { out << "\nHypreParMatrix: hypre_ParCSRCommPkg:\n"; } out << "Rank " << myid << ":\n" " number of sends = " << comm_pkg->num_sends << " (" << sizeof(double)*comm_pkg->send_map_starts[comm_pkg->num_sends] << " bytes)\n" " number of recvs = " << comm_pkg->num_recvs << " (" << sizeof(double)*comm_pkg->recv_vec_starts[comm_pkg->num_recvs] << " bytes)\n"; if (myid != nproc-1) { out << std::flush; MPI_Send(&c, 1, MPI_CHAR, myid+1, tag, comm); } else { out << std::endl; } MPI_Barrier(comm); } inline void delete_hypre_CSRMatrixData(hypre_CSRMatrix *M) { HYPRE_Complex *data = hypre_CSRMatrixData(M); Memory(data, M->num_nonzeros, true).Delete(); } inline void delete_hypre_ParCSRMatrixColMapOffd(hypre_ParCSRMatrix *A) { HYPRE_Int *A_col_map_offd = hypre_ParCSRMatrixColMapOffd(A); int size = hypre_CSRMatrixNumCols(hypre_ParCSRMatrixOffd(A)); Memory(A_col_map_offd, size, true).Delete(); } inline void delete_hypre_CSRMatrixI(hypre_CSRMatrix *M) { HYPRE_Int *I = hypre_CSRMatrixI(M); int size = hypre_CSRMatrixNumRows(M) + 1; Memory(I, size, true).Delete(); } inline void delete_hypre_CSRMatrixJ(hypre_CSRMatrix *M) { HYPRE_Int *J = hypre_CSRMatrixJ(M); int size = hypre_CSRMatrixNumNonzeros(M); Memory(J, size, true).Delete(); } void HypreParMatrix::Destroy() { if ( X != NULL ) { delete X; } if ( Y != NULL ) { delete Y; } if (A == NULL) { return; } if (diagOwner >= 0) { if (diagOwner & 1) { delete_hypre_CSRMatrixI(A->diag); delete_hypre_CSRMatrixJ(A->diag); } hypre_CSRMatrixI(A->diag) = NULL; hypre_CSRMatrixJ(A->diag) = NULL; if (diagOwner & 2) { delete_hypre_CSRMatrixData(A->diag); } hypre_CSRMatrixData(A->diag) = NULL; } if (offdOwner >= 0) { if (offdOwner & 1) { delete_hypre_CSRMatrixI(A->offd); delete_hypre_CSRMatrixJ(A->offd); } hypre_CSRMatrixI(A->offd) = NULL; hypre_CSRMatrixJ(A->offd) = NULL; if (offdOwner & 2) { delete_hypre_CSRMatrixData(A->offd); } hypre_CSRMatrixData(A->offd) = NULL; } if (colMapOwner >= 0) { if (colMapOwner & 1) { delete_hypre_ParCSRMatrixColMapOffd(A); } hypre_ParCSRMatrixColMapOffd(A) = NULL; } if (ParCSROwner) { hypre_ParCSRMatrixDestroy(A); } } #if MFEM_HYPRE_VERSION < 21400 HypreParMatrix *Add(double alpha, const HypreParMatrix &A, double beta, const HypreParMatrix &B) { hypre_ParCSRMatrix *C_hypre = internal::hypre_ParCSRMatrixAdd(const_cast(A), const_cast(B)); MFEM_VERIFY(C_hypre, "error in hypre_ParCSRMatrixAdd"); hypre_MatvecCommPkgCreate(C_hypre); HypreParMatrix *C = new HypreParMatrix(C_hypre); *C = 0.0; C->Add(alpha, A); C->Add(beta, B); return C; } HypreParMatrix * ParAdd(const HypreParMatrix *A, const HypreParMatrix *B) { hypre_ParCSRMatrix * C = internal::hypre_ParCSRMatrixAdd(*A,*B); hypre_MatvecCommPkgCreate(C); return new HypreParMatrix(C); } #else HypreParMatrix *Add(double alpha, const HypreParMatrix &A, double beta, const HypreParMatrix &B) { hypre_ParCSRMatrix *C; hypre_ParcsrAdd(alpha, A, beta, B, &C); hypre_MatvecCommPkgCreate(C); return new HypreParMatrix(C); } HypreParMatrix * ParAdd(const HypreParMatrix *A, const HypreParMatrix *B) { hypre_ParCSRMatrix *C; hypre_ParcsrAdd(1.0, *A, 1.0, *B, &C); hypre_MatvecCommPkgCreate(C); return new HypreParMatrix(C); } #endif HypreParMatrix * ParMult(const HypreParMatrix *A, const HypreParMatrix *B, bool own_matrix) { hypre_ParCSRMatrix * ab; ab = hypre_ParMatmul(*A,*B); hypre_ParCSRMatrixSetNumNonzeros(ab); hypre_MatvecCommPkgCreate(ab); HypreParMatrix *C = new HypreParMatrix(ab); if (own_matrix) { C->CopyRowStarts(); C->CopyColStarts(); } return C; } HypreParMatrix * RAP(const HypreParMatrix *A, const HypreParMatrix *P) { HYPRE_Int P_owns_its_col_starts = hypre_ParCSRMatrixOwnsColStarts((hypre_ParCSRMatrix*)(*P)); hypre_ParCSRMatrix * rap; hypre_BoomerAMGBuildCoarseOperator(*P,*A,*P,&rap); hypre_ParCSRMatrixSetNumNonzeros(rap); // hypre_MatvecCommPkgCreate(rap); /* Warning: hypre_BoomerAMGBuildCoarseOperator steals the col_starts from P (even if it does not own them)! */ hypre_ParCSRMatrixSetRowStartsOwner(rap,0); hypre_ParCSRMatrixSetColStartsOwner(rap,0); if (P_owns_its_col_starts) { hypre_ParCSRMatrixSetColStartsOwner(*P, 1); } return new HypreParMatrix(rap); } HypreParMatrix * RAP(const HypreParMatrix * Rt, const HypreParMatrix *A, const HypreParMatrix *P) { HYPRE_Int P_owns_its_col_starts = hypre_ParCSRMatrixOwnsColStarts((hypre_ParCSRMatrix*)(*P)); HYPRE_Int Rt_owns_its_col_starts = hypre_ParCSRMatrixOwnsColStarts((hypre_ParCSRMatrix*)(*Rt)); hypre_ParCSRMatrix * rap; hypre_BoomerAMGBuildCoarseOperator(*Rt,*A,*P,&rap); hypre_ParCSRMatrixSetNumNonzeros(rap); // hypre_MatvecCommPkgCreate(rap); /* Warning: hypre_BoomerAMGBuildCoarseOperator steals the col_starts from Rt and P (even if they do not own them)! */ hypre_ParCSRMatrixSetRowStartsOwner(rap,0); hypre_ParCSRMatrixSetColStartsOwner(rap,0); if (P_owns_its_col_starts) { hypre_ParCSRMatrixSetColStartsOwner(*P, 1); } if (Rt_owns_its_col_starts) { hypre_ParCSRMatrixSetColStartsOwner(*Rt, 1); } return new HypreParMatrix(rap); } // Helper function for HypreParMatrixFromBlocks. Note that scalability to // extremely large processor counts is limited by the use of MPI_Allgather. void GatherBlockOffsetData(MPI_Comm comm, const int rank, const int nprocs, const int num_loc, Array &offsets, std::vector &all_num_loc, const int numBlocks, std::vector> &blockProcOffsets, std::vector &procOffsets, std::vector> &procBlockOffsets, int &firstLocal, int &globalNum) { std::vector> all_block_num_loc(numBlocks); MPI_Allgather(&num_loc, 1, MPI_INT, all_num_loc.data(), 1, MPI_INT, comm); for (int j = 0; j < numBlocks; ++j) { all_block_num_loc[j].resize(nprocs); blockProcOffsets[j].resize(nprocs); const int blockNumRows = offsets[j + 1] - offsets[j]; MPI_Allgather(&blockNumRows, 1, MPI_INT, all_block_num_loc[j].data(), 1, MPI_INT, comm); blockProcOffsets[j][0] = 0; for (int i = 0; i < nprocs - 1; ++i) { blockProcOffsets[j][i + 1] = blockProcOffsets[j][i] + all_block_num_loc[j][i]; } } firstLocal = 0; globalNum = 0; procOffsets[0] = 0; for (int i = 0; i < nprocs; ++i) { globalNum += all_num_loc[i]; if (i < rank) { firstLocal += all_num_loc[i]; } if (i < nprocs - 1) { procOffsets[i + 1] = procOffsets[i] + all_num_loc[i]; } procBlockOffsets[i].resize(numBlocks); procBlockOffsets[i][0] = 0; for (int j = 1; j < numBlocks; ++j) { procBlockOffsets[i][j] = procBlockOffsets[i][j - 1] + all_block_num_loc[j - 1][i]; } } } HypreParMatrix * HypreParMatrixFromBlocks(Array2D &blocks, Array2D *blockCoeff) { const int numBlockRows = blocks.NumRows(); const int numBlockCols = blocks.NumCols(); MFEM_VERIFY(numBlockRows > 0 && numBlockCols > 0, "Invalid input to HypreParMatrixFromBlocks"); if (blockCoeff != NULL) { MFEM_VERIFY(numBlockRows == blockCoeff->NumRows() && numBlockCols == blockCoeff->NumCols(), "Invalid input to HypreParMatrixFromBlocks"); } Array rowOffsets(numBlockRows+1); Array colOffsets(numBlockCols+1); int nonNullBlockRow0 = -1; for (int j=0; j= 0, "Null row of blocks"); MPI_Comm comm = blocks(0,nonNullBlockRow0)->GetComm(); // Set offsets based on the number of rows or columns in each block. rowOffsets = 0; colOffsets = 0; for (int i=0; iNumRows(); const int ncols = blocks(i,j)->NumCols(); MFEM_VERIFY(nrows > 0 && ncols > 0, "Invalid block in HypreParMatrixFromBlocks"); if (rowOffsets[i+1] == 0) { rowOffsets[i+1] = nrows; } else { MFEM_VERIFY(rowOffsets[i+1] == nrows, "Inconsistent blocks in HypreParMatrixFromBlocks"); } if (colOffsets[j+1] == 0) { colOffsets[j+1] = ncols; } else { MFEM_VERIFY(colOffsets[j+1] == ncols, "Inconsistent blocks in HypreParMatrixFromBlocks"); } } } MFEM_VERIFY(rowOffsets[i+1] > 0, "Invalid input blocks"); rowOffsets[i+1] += rowOffsets[i]; } for (int j=0; j 0, "Invalid input blocks"); colOffsets[j+1] += colOffsets[j]; } const int num_loc_rows = rowOffsets[numBlockRows]; const int num_loc_cols = colOffsets[numBlockCols]; int nprocs, rank; MPI_Comm_rank(comm, &rank); MPI_Comm_size(comm, &nprocs); std::vector all_num_loc_rows(nprocs); std::vector all_num_loc_cols(nprocs); std::vector procRowOffsets(nprocs); std::vector procColOffsets(nprocs); std::vector> blockRowProcOffsets(numBlockRows); std::vector> blockColProcOffsets(numBlockCols); std::vector> procBlockRowOffsets(nprocs); std::vector> procBlockColOffsets(nprocs); int first_loc_row, glob_nrows, first_loc_col, glob_ncols; GatherBlockOffsetData(comm, rank, nprocs, num_loc_rows, rowOffsets, all_num_loc_rows, numBlockRows, blockRowProcOffsets, procRowOffsets, procBlockRowOffsets, first_loc_row, glob_nrows); GatherBlockOffsetData(comm, rank, nprocs, num_loc_cols, colOffsets, all_num_loc_cols, numBlockCols, blockColProcOffsets, procColOffsets, procBlockColOffsets, first_loc_col, glob_ncols); std::vector opI(num_loc_rows + 1); std::vector cnt(num_loc_rows); for (int i = 0; i < num_loc_rows; ++i) { opI[i] = 0; cnt[i] = 0; } opI[num_loc_rows] = 0; Array2D csr_blocks(numBlockRows, numBlockCols); // Loop over all blocks, to determine nnz for each row. for (int i = 0; i < numBlockRows; ++i) { for (int j = 0; j < numBlockCols; ++j) { if (blocks(i, j) == NULL) { csr_blocks(i, j) = NULL; } else { { hypre_ParCSRMatrix *parcsr_op = (hypre_ParCSRMatrix*) const_cast (*(blocks(i, j))); MFEM_ASSERT(parcsr_op != NULL, "const_cast failed"); csr_blocks(i, j) = hypre_MergeDiagAndOffd(parcsr_op); } for (int k = 0; k < csr_blocks(i, j)->num_rows; ++k) { opI[rowOffsets[i] + k + 1] += csr_blocks(i, j)->i[k + 1] - csr_blocks(i, j)->i[k]; } } } } // Now opI[i] is nnz for row i-1. Do a partial sum to get offsets. for (int i = 0; i < num_loc_rows; ++i) { opI[i + 1] += opI[i]; } const int nnz = opI[num_loc_rows]; std::vector opJ(nnz); std::vector data(nnz); // Loop over all blocks, to set matrix data. for (int i = 0; i < numBlockRows; ++i) { for (int j = 0; j < numBlockCols; ++j) { if (csr_blocks(i, j) != NULL) { const int nrows = csr_blocks(i, j)->num_rows; const double cij = blockCoeff ? (*blockCoeff)(i, j) : 1.0; for (int k = 0; k < nrows; ++k) { const int rowg = rowOffsets[i] + k; // process-local row const int nnz_k = csr_blocks(i,j)->i[k+1]-csr_blocks(i,j)->i[k]; const int osk = csr_blocks(i, j)->i[k]; for (int l = 0; l < nnz_k; ++l) { // Find the column process offset for the block. const int bcol = csr_blocks(i, j)->j[osk + l]; int bcolproc = 0; for (int p = 1; p < nprocs; ++p) { if (blockColProcOffsets[j][p] > bcol) { bcolproc = p - 1; break; } } if (blockColProcOffsets[j][nprocs - 1] <= bcol) { bcolproc = nprocs - 1; } opJ[opI[rowg] + cnt[rowg]] = procColOffsets[bcolproc] + procBlockColOffsets[bcolproc][j] + bcol - blockColProcOffsets[j][bcolproc]; data[opI[rowg] + cnt[rowg]] = cij * csr_blocks(i, j)->data[osk + l]; cnt[rowg]++; } } } } } for (int i = 0; i < numBlockRows; ++i) { for (int j = 0; j < numBlockCols; ++j) { if (csr_blocks(i, j) != NULL) { hypre_CSRMatrixDestroy(csr_blocks(i, j)); } } } std::vector rowStarts2(2); rowStarts2[0] = first_loc_row; rowStarts2[1] = first_loc_row + all_num_loc_rows[rank]; std::vector colStarts2(2); colStarts2[0] = first_loc_col; colStarts2[1] = first_loc_col + all_num_loc_cols[rank]; return new HypreParMatrix(comm, num_loc_rows, glob_nrows, glob_ncols, (int *)opI.data(), (HYPRE_Int *)opJ.data(), (double *)data.data(), (HYPRE_Int *)rowStarts2.data(), (HYPRE_Int *)colStarts2.data()); } void EliminateBC(HypreParMatrix &A, HypreParMatrix &Ae, const Array &ess_dof_list, const Vector &X, Vector &B) { // B -= Ae*X Ae.Mult(-1.0, X, 1.0, B); hypre_CSRMatrix *A_diag = hypre_ParCSRMatrixDiag((hypre_ParCSRMatrix *)A); double *data = hypre_CSRMatrixData(A_diag); HYPRE_Int *I = hypre_CSRMatrixI(A_diag); #ifdef MFEM_DEBUG HYPRE_Int *J = hypre_CSRMatrixJ(A_diag); hypre_CSRMatrix *A_offd = hypre_ParCSRMatrixOffd((hypre_ParCSRMatrix *)A); HYPRE_Int *I_offd = hypre_CSRMatrixI(A_offd); double *data_offd = hypre_CSRMatrixData(A_offd); #endif for (int i = 0; i < ess_dof_list.Size(); i++) { int r = ess_dof_list[i]; B(r) = data[I[r]] * X(r); #ifdef MFEM_DEBUG // Check that in the rows specified by the ess_dof_list, the matrix A has // only one entry -- the diagonal. // if (I[r+1] != I[r]+1 || J[I[r]] != r || I_offd[r] != I_offd[r+1]) if (J[I[r]] != r) { MFEM_ABORT("the diagonal entry must be the first entry in the row!"); } for (int j = I[r]+1; j < I[r+1]; j++) { if (data[j] != 0.0) { MFEM_ABORT("all off-diagonal entries must be zero!"); } } for (int j = I_offd[r]; j < I_offd[r+1]; j++) { if (data_offd[j] != 0.0) { MFEM_ABORT("all off-diagonal entries must be zero!"); } } #endif } } // Taubin or "lambda-mu" scheme, which alternates between positive and // negative step sizes to approximate low-pass filter effect. int ParCSRRelax_Taubin(hypre_ParCSRMatrix *A, // matrix to relax with hypre_ParVector *f, // right-hand side double lambda, double mu, int N, double max_eig, hypre_ParVector *u, // initial/updated approximation hypre_ParVector *r // another temp vector ) { hypre_CSRMatrix *A_diag = hypre_ParCSRMatrixDiag(A); HYPRE_Int num_rows = hypre_CSRMatrixNumRows(A_diag); double *u_data = hypre_VectorData(hypre_ParVectorLocalVector(u)); double *r_data = hypre_VectorData(hypre_ParVectorLocalVector(r)); for (int i = 0; i < N; i++) { // get residual: r = f - A*u hypre_ParVectorCopy(f, r); hypre_ParCSRMatrixMatvec(-1.0, A, u, 1.0, r); double coef; (0 == (i % 2)) ? coef = lambda : coef = mu; for (HYPRE_Int j = 0; j < num_rows; j++) { u_data[j] += coef*r_data[j] / max_eig; } } return 0; } // FIR scheme, which uses Chebyshev polynomials and a window function // to approximate a low-pass step filter. int ParCSRRelax_FIR(hypre_ParCSRMatrix *A, // matrix to relax with hypre_ParVector *f, // right-hand side double max_eig, int poly_order, double* fir_coeffs, hypre_ParVector *u, // initial/updated approximation hypre_ParVector *x0, // temporaries hypre_ParVector *x1, hypre_ParVector *x2, hypre_ParVector *x3) { hypre_CSRMatrix *A_diag = hypre_ParCSRMatrixDiag(A); HYPRE_Int num_rows = hypre_CSRMatrixNumRows(A_diag); double *u_data = hypre_VectorData(hypre_ParVectorLocalVector(u)); double *x0_data = hypre_VectorData(hypre_ParVectorLocalVector(x0)); double *x1_data = hypre_VectorData(hypre_ParVectorLocalVector(x1)); double *x2_data = hypre_VectorData(hypre_ParVectorLocalVector(x2)); double *x3_data = hypre_VectorData(hypre_ParVectorLocalVector(x3)); hypre_ParVectorCopy(u, x0); // x1 = f -A*x0/max_eig hypre_ParVectorCopy(f, x1); hypre_ParCSRMatrixMatvec(-1.0, A, x0, 1.0, x1); for (HYPRE_Int i = 0; i < num_rows; i++) { x1_data[i] /= -max_eig; } // x1 = x0 -x1 for (HYPRE_Int i = 0; i < num_rows; i++) { x1_data[i] = x0_data[i] -x1_data[i]; } // x3 = f0*x0 +f1*x1 for (HYPRE_Int i = 0; i < num_rows; i++) { x3_data[i] = fir_coeffs[0]*x0_data[i] +fir_coeffs[1]*x1_data[i]; } for (int n = 2; n <= poly_order; n++) { // x2 = f - A*x1/max_eig hypre_ParVectorCopy(f, x2); hypre_ParCSRMatrixMatvec(-1.0, A, x1, 1.0, x2); for (HYPRE_Int i = 0; i < num_rows; i++) { x2_data[i] /= -max_eig; } // x2 = (x1-x0) +(x1-2*x2) // x3 = x3 +f[n]*x2 // x0 = x1 // x1 = x2 for (HYPRE_Int i = 0; i < num_rows; i++) { x2_data[i] = (x1_data[i]-x0_data[i]) +(x1_data[i]-2*x2_data[i]); x3_data[i] += fir_coeffs[n]*x2_data[i]; x0_data[i] = x1_data[i]; x1_data[i] = x2_data[i]; } } for (HYPRE_Int i = 0; i < num_rows; i++) { u_data[i] = x3_data[i]; } return 0; } HypreSmoother::HypreSmoother() : Solver() { type = 2; relax_times = 1; relax_weight = 1.0; omega = 1.0; poly_order = 2; poly_fraction = .3; lambda = 0.5; mu = -0.5; taubin_iter = 40; l1_norms = NULL; pos_l1_norms = false; eig_est_cg_iter = 10; B = X = V = Z = NULL; X0 = X1 = NULL; fir_coeffs = NULL; } HypreSmoother::HypreSmoother(HypreParMatrix &_A, int _type, int _relax_times, double _relax_weight, double _omega, int _poly_order, double _poly_fraction, int _eig_est_cg_iter) { type = _type; relax_times = _relax_times; relax_weight = _relax_weight; omega = _omega; poly_order = _poly_order; poly_fraction = _poly_fraction; eig_est_cg_iter = _eig_est_cg_iter; l1_norms = NULL; pos_l1_norms = false; B = X = V = Z = NULL; X0 = X1 = NULL; fir_coeffs = NULL; SetOperator(_A); } void HypreSmoother::SetType(HypreSmoother::Type _type, int _relax_times) { type = static_cast(_type); relax_times = _relax_times; } void HypreSmoother::SetSOROptions(double _relax_weight, double _omega) { relax_weight = _relax_weight; omega = _omega; } void HypreSmoother::SetPolyOptions(int _poly_order, double _poly_fraction, int _eig_est_cg_iter) { poly_order = _poly_order; poly_fraction = _poly_fraction; eig_est_cg_iter = _eig_est_cg_iter; } void HypreSmoother::SetTaubinOptions(double _lambda, double _mu, int _taubin_iter) { lambda = _lambda; mu = _mu; taubin_iter = _taubin_iter; } void HypreSmoother::SetWindowByName(const char* name) { double a = -1, b, c; if (!strcmp(name,"Rectangular")) { a = 1.0, b = 0.0, c = 0.0; } if (!strcmp(name,"Hanning")) { a = 0.5, b = 0.5, c = 0.0; } if (!strcmp(name,"Hamming")) { a = 0.54, b = 0.46, c = 0.0; } if (!strcmp(name,"Blackman")) { a = 0.42, b = 0.50, c = 0.08; } if (a < 0) { mfem_error("HypreSmoother::SetWindowByName : name not recognized!"); } SetWindowParameters(a, b, c); } void HypreSmoother::SetWindowParameters(double a, double b, double c) { window_params[0] = a; window_params[1] = b; window_params[2] = c; } void HypreSmoother::SetOperator(const Operator &op) { A = const_cast(dynamic_cast(&op)); if (A == NULL) { mfem_error("HypreSmoother::SetOperator : not HypreParMatrix!"); } height = A->Height(); width = A->Width(); if (B) { delete B; } if (X) { delete X; } if (V) { delete V; } if (Z) { delete Z; } if (l1_norms) { mfem_hypre_TFree(l1_norms); } delete X0; delete X1; X1 = X0 = Z = V = B = X = NULL; if (type >= 1 && type <= 4) { hypre_ParCSRComputeL1Norms(*A, type, NULL, &l1_norms); } else if (type == 5) { l1_norms = mfem_hypre_CTAlloc(double, height); Vector ones(height), diag(l1_norms, height); ones = 1.0; A->Mult(ones, diag); type = 1; } else { l1_norms = NULL; } if (l1_norms && pos_l1_norms) { for (int i = 0; i < height; i++) { l1_norms[i] = std::abs(l1_norms[i]); } } if (type == 16) { poly_scale = 1; if (eig_est_cg_iter > 0) { hypre_ParCSRMaxEigEstimateCG(*A, poly_scale, eig_est_cg_iter, &max_eig_est, &min_eig_est); } else { min_eig_est = 0; hypre_ParCSRMaxEigEstimate(*A, poly_scale, &max_eig_est); } Z = new HypreParVector(*A); } else if (type == 1001 || type == 1002) { poly_scale = 0; if (eig_est_cg_iter > 0) { hypre_ParCSRMaxEigEstimateCG(*A, poly_scale, eig_est_cg_iter, &max_eig_est, &min_eig_est); } else { min_eig_est = 0; hypre_ParCSRMaxEigEstimate(*A, poly_scale, &max_eig_est); } // The Taubin and FIR polynomials are defined on [0, 2] max_eig_est /= 2; // Compute window function, Chebyshev coefficients, and allocate temps. if (type == 1002) { // Temporaries for Chebyshev recursive evaluation Z = new HypreParVector(*A); X0 = new HypreParVector(*A); X1 = new HypreParVector(*A); SetFIRCoefficients(max_eig_est); } } } void HypreSmoother::SetFIRCoefficients(double max_eig) { if (fir_coeffs) { delete [] fir_coeffs; } fir_coeffs = new double[poly_order+1]; double* window_coeffs = new double[poly_order+1]; double* cheby_coeffs = new double[poly_order+1]; double a = window_params[0]; double b = window_params[1]; double c = window_params[2]; for (int i = 0; i <= poly_order; i++) { double t = (i*M_PI)/(poly_order+1); window_coeffs[i] = a + b*cos(t) +c*cos(2*t); } double k_pb = poly_fraction*max_eig; double theta_pb = acos(1.0 -0.5*k_pb); double sigma = 0.0; cheby_coeffs[0] = (theta_pb +sigma)/M_PI; for (int i = 1; i <= poly_order; i++) { double t = i*(theta_pb+sigma); cheby_coeffs[i] = 2.0*sin(t)/(i*M_PI); } for (int i = 0; i <= poly_order; i++) { fir_coeffs[i] = window_coeffs[i]*cheby_coeffs[i]; } delete[] window_coeffs; delete[] cheby_coeffs; } void HypreSmoother::Mult(const HypreParVector &b, HypreParVector &x) const { if (A == NULL) { mfem_error("HypreSmoother::Mult (...) : HypreParMatrix A is missing"); return; } b.HostRead(); if (!iterative_mode) { if (type == 0 && relax_times == 1) { x.HostWrite(); HYPRE_ParCSRDiagScale(NULL, *A, b, x); if (relax_weight != 1.0) { x *= relax_weight; } return; } x = 0.0; } x.HostReadWrite(); if (V == NULL) { V = new HypreParVector(*A); } if (type == 1001) { for (int sweep = 0; sweep < relax_times; sweep++) { ParCSRRelax_Taubin(*A, b, lambda, mu, taubin_iter, max_eig_est, x, *V); } } else if (type == 1002) { for (int sweep = 0; sweep < relax_times; sweep++) { ParCSRRelax_FIR(*A, b, max_eig_est, poly_order, fir_coeffs, x, *X0, *X1, *V, *Z); } } else { if (Z == NULL) hypre_ParCSRRelax(*A, b, type, relax_times, l1_norms, relax_weight, omega, max_eig_est, min_eig_est, poly_order, poly_fraction, x, *V, NULL); else hypre_ParCSRRelax(*A, b, type, relax_times, l1_norms, relax_weight, omega, max_eig_est, min_eig_est, poly_order, poly_fraction, x, *V, *Z); } } void HypreSmoother::Mult(const Vector &b, Vector &x) const { if (A == NULL) { mfem_error("HypreSmoother::Mult (...) : HypreParMatrix A is missing"); return; } auto b_data = b.HostRead(); auto x_data = iterative_mode ? x.HostReadWrite() : x.HostWrite(); if (B == NULL) { B = new HypreParVector(A->GetComm(), A -> GetGlobalNumRows(), const_cast(b_data), A -> GetRowStarts()); X = new HypreParVector(A->GetComm(), A -> GetGlobalNumCols(), x_data, A -> GetColStarts()); } else { B -> SetData(const_cast(b_data)); X -> SetData(x_data); } Mult(*B, *X); } HypreSmoother::~HypreSmoother() { if (B) { delete B; } if (X) { delete X; } if (V) { delete V; } if (Z) { delete Z; } if (l1_norms) { mfem_hypre_TFree(l1_norms); } if (fir_coeffs) { delete [] fir_coeffs; } if (X0) { delete X0; } if (X1) { delete X1; } } HypreSolver::HypreSolver() { A = NULL; setup_called = 0; B = X = NULL; error_mode = ABORT_HYPRE_ERRORS; } HypreSolver::HypreSolver(HypreParMatrix *_A) : Solver(_A->Height(), _A->Width()) { A = _A; setup_called = 0; B = X = NULL; error_mode = ABORT_HYPRE_ERRORS; } void HypreSolver::Mult(const HypreParVector &b, HypreParVector &x) const { HYPRE_Int err; if (A == NULL) { mfem_error("HypreSolver::Mult (...) : HypreParMatrix A is missing"); return; } if (!setup_called) { err = SetupFcn()(*this, *A, b, x); if (error_mode == WARN_HYPRE_ERRORS) { if (err) { MFEM_WARNING("Error during setup! Error code: " << err); } } else if (error_mode == ABORT_HYPRE_ERRORS) { MFEM_VERIFY(!err, "Error during setup! Error code: " << err); } hypre_error_flag = 0; setup_called = 1; } if (!iterative_mode) { x = 0.0; } err = SolveFcn()(*this, *A, b, x); if (error_mode == WARN_HYPRE_ERRORS) { if (err) { MFEM_WARNING("Error during solve! Error code: " << err); } } else if (error_mode == ABORT_HYPRE_ERRORS) { MFEM_VERIFY(!err, "Error during solve! Error code: " << err); } hypre_error_flag = 0; } void HypreSolver::Mult(const Vector &b, Vector &x) const { if (A == NULL) { mfem_error("HypreSolver::Mult (...) : HypreParMatrix A is missing"); return; } auto b_data = b.HostRead(); auto x_data = x.HostWrite(); if (B == NULL) { B = new HypreParVector(A->GetComm(), A -> GetGlobalNumRows(), const_cast(b_data), A -> GetRowStarts()); X = new HypreParVector(A->GetComm(), A -> GetGlobalNumCols(), x_data, A -> GetColStarts()); } else { B -> SetData(const_cast(b_data)); X -> SetData(x_data); } Mult(*B, *X); } HypreSolver::~HypreSolver() { if (B) { delete B; } if (X) { delete X; } } HyprePCG::HyprePCG(MPI_Comm comm) : precond(NULL) { iterative_mode = true; HYPRE_ParCSRPCGCreate(comm, &pcg_solver); } HyprePCG::HyprePCG(HypreParMatrix &_A) : HypreSolver(&_A), precond(NULL) { MPI_Comm comm; iterative_mode = true; HYPRE_ParCSRMatrixGetComm(*A, &comm); HYPRE_ParCSRPCGCreate(comm, &pcg_solver); } void HyprePCG::SetOperator(const Operator &op) { const HypreParMatrix *new_A = dynamic_cast(&op); MFEM_VERIFY(new_A, "new Operator must be a HypreParMatrix!"); // update base classes: Operator, Solver, HypreSolver height = new_A->Height(); width = new_A->Width(); A = const_cast(new_A); if (precond) { precond->SetOperator(*A); this->SetPreconditioner(*precond); } setup_called = 0; delete X; delete B; B = X = NULL; } void HyprePCG::SetTol(double tol) { HYPRE_PCGSetTol(pcg_solver, tol); } void HyprePCG::SetMaxIter(int max_iter) { HYPRE_PCGSetMaxIter(pcg_solver, max_iter); } void HyprePCG::SetLogging(int logging) { HYPRE_PCGSetLogging(pcg_solver, logging); } void HyprePCG::SetPrintLevel(int print_lvl) { HYPRE_ParCSRPCGSetPrintLevel(pcg_solver, print_lvl); } void HyprePCG::SetPreconditioner(HypreSolver &_precond) { precond = &_precond; HYPRE_ParCSRPCGSetPrecond(pcg_solver, _precond.SolveFcn(), _precond.SetupFcn(), _precond); } void HyprePCG::SetResidualConvergenceOptions(int res_frequency, double rtol) { HYPRE_PCGSetTwoNorm(pcg_solver, 1); if (res_frequency > 0) { HYPRE_PCGSetRecomputeResidualP(pcg_solver, res_frequency); } if (rtol > 0.0) { HYPRE_PCGSetResidualTol(pcg_solver, rtol); } } void HyprePCG::Mult(const HypreParVector &b, HypreParVector &x) const { int myid; HYPRE_Int time_index = 0; HYPRE_Int num_iterations; double final_res_norm; MPI_Comm comm; HYPRE_Int print_level; HYPRE_PCGGetPrintLevel(pcg_solver, &print_level); HYPRE_ParCSRPCGSetPrintLevel(pcg_solver, print_level%3); HYPRE_ParCSRMatrixGetComm(*A, &comm); if (!setup_called) { if (print_level > 0 && print_level < 3) { time_index = hypre_InitializeTiming("PCG Setup"); hypre_BeginTiming(time_index); } HYPRE_ParCSRPCGSetup(pcg_solver, *A, b, x); setup_called = 1; if (print_level > 0 && print_level < 3) { hypre_EndTiming(time_index); hypre_PrintTiming("Setup phase times", comm); hypre_FinalizeTiming(time_index); hypre_ClearTiming(); } } if (print_level > 0 && print_level < 3) { time_index = hypre_InitializeTiming("PCG Solve"); hypre_BeginTiming(time_index); } if (!iterative_mode) { x = 0.0; } b.HostRead(); x.HostReadWrite(); HYPRE_ParCSRPCGSolve(pcg_solver, *A, b, x); if (print_level > 0) { if (print_level < 3) { hypre_EndTiming(time_index); hypre_PrintTiming("Solve phase times", comm); hypre_FinalizeTiming(time_index); hypre_ClearTiming(); } HYPRE_ParCSRPCGGetNumIterations(pcg_solver, &num_iterations); HYPRE_ParCSRPCGGetFinalRelativeResidualNorm(pcg_solver, &final_res_norm); MPI_Comm_rank(comm, &myid); if (myid == 0) { mfem::out << "PCG Iterations = " << num_iterations << endl << "Final PCG Relative Residual Norm = " << final_res_norm << endl; } } HYPRE_ParCSRPCGSetPrintLevel(pcg_solver, print_level); } HyprePCG::~HyprePCG() { HYPRE_ParCSRPCGDestroy(pcg_solver); } HypreGMRES::HypreGMRES(MPI_Comm comm) : precond(NULL) { iterative_mode = true; HYPRE_ParCSRGMRESCreate(comm, &gmres_solver); SetDefaultOptions(); } HypreGMRES::HypreGMRES(HypreParMatrix &_A) : HypreSolver(&_A) { MPI_Comm comm; iterative_mode = true; HYPRE_ParCSRMatrixGetComm(*A, &comm); HYPRE_ParCSRGMRESCreate(comm, &gmres_solver); SetDefaultOptions(); } void HypreGMRES::SetDefaultOptions() { int k_dim = 50; int max_iter = 100; double tol = 1e-6; HYPRE_ParCSRGMRESSetKDim(gmres_solver, k_dim); HYPRE_ParCSRGMRESSetMaxIter(gmres_solver, max_iter); HYPRE_ParCSRGMRESSetTol(gmres_solver, tol); } void HypreGMRES::SetOperator(const Operator &op) { const HypreParMatrix *new_A = dynamic_cast(&op); MFEM_VERIFY(new_A, "new Operator must be a HypreParMatrix!"); // update base classes: Operator, Solver, HypreSolver height = new_A->Height(); width = new_A->Width(); A = const_cast(new_A); if (precond) { precond->SetOperator(*A); this->SetPreconditioner(*precond); } setup_called = 0; delete X; delete B; B = X = NULL; } void HypreGMRES::SetTol(double tol) { HYPRE_GMRESSetTol(gmres_solver, tol); } void HypreGMRES::SetMaxIter(int max_iter) { HYPRE_GMRESSetMaxIter(gmres_solver, max_iter); } void HypreGMRES::SetKDim(int k_dim) { HYPRE_GMRESSetKDim(gmres_solver, k_dim); } void HypreGMRES::SetLogging(int logging) { HYPRE_GMRESSetLogging(gmres_solver, logging); } void HypreGMRES::SetPrintLevel(int print_lvl) { HYPRE_GMRESSetPrintLevel(gmres_solver, print_lvl); } void HypreGMRES::SetPreconditioner(HypreSolver &_precond) { precond = &_precond; HYPRE_ParCSRGMRESSetPrecond(gmres_solver, _precond.SolveFcn(), _precond.SetupFcn(), _precond); } void HypreGMRES::Mult(const HypreParVector &b, HypreParVector &x) const { int myid; HYPRE_Int time_index = 0; HYPRE_Int num_iterations; double final_res_norm; MPI_Comm comm; HYPRE_Int print_level; HYPRE_GMRESGetPrintLevel(gmres_solver, &print_level); HYPRE_ParCSRMatrixGetComm(*A, &comm); if (!setup_called) { if (print_level > 0) { time_index = hypre_InitializeTiming("GMRES Setup"); hypre_BeginTiming(time_index); } HYPRE_ParCSRGMRESSetup(gmres_solver, *A, b, x); setup_called = 1; if (print_level > 0) { hypre_EndTiming(time_index); hypre_PrintTiming("Setup phase times", comm); hypre_FinalizeTiming(time_index); hypre_ClearTiming(); } } if (print_level > 0) { time_index = hypre_InitializeTiming("GMRES Solve"); hypre_BeginTiming(time_index); } if (!iterative_mode) { x = 0.0; } HYPRE_ParCSRGMRESSolve(gmres_solver, *A, b, x); if (print_level > 0) { hypre_EndTiming(time_index); hypre_PrintTiming("Solve phase times", comm); hypre_FinalizeTiming(time_index); hypre_ClearTiming(); HYPRE_ParCSRGMRESGetNumIterations(gmres_solver, &num_iterations); HYPRE_ParCSRGMRESGetFinalRelativeResidualNorm(gmres_solver, &final_res_norm); MPI_Comm_rank(comm, &myid); if (myid == 0) { mfem::out << "GMRES Iterations = " << num_iterations << endl << "Final GMRES Relative Residual Norm = " << final_res_norm << endl; } } } HypreGMRES::~HypreGMRES() { HYPRE_ParCSRGMRESDestroy(gmres_solver); } void HypreDiagScale::SetOperator(const Operator &op) { const HypreParMatrix *new_A = dynamic_cast(&op); MFEM_VERIFY(new_A, "new Operator must be a HypreParMatrix!"); // update base classes: Operator, Solver, HypreSolver height = new_A->Height(); width = new_A->Width(); A = const_cast(new_A); setup_called = 0; delete X; delete B; B = X = NULL; } HypreParaSails::HypreParaSails(MPI_Comm comm) { HYPRE_ParaSailsCreate(comm, &sai_precond); SetDefaultOptions(); } HypreParaSails::HypreParaSails(HypreParMatrix &A) : HypreSolver(&A) { MPI_Comm comm; HYPRE_ParCSRMatrixGetComm(A, &comm); HYPRE_ParaSailsCreate(comm, &sai_precond); SetDefaultOptions(); } void HypreParaSails::SetDefaultOptions() { int sai_max_levels = 1; double sai_threshold = 0.1; double sai_filter = 0.1; int sai_sym = 0; double sai_loadbal = 0.0; int sai_reuse = 0; int sai_logging = 1; HYPRE_ParaSailsSetParams(sai_precond, sai_threshold, sai_max_levels); HYPRE_ParaSailsSetFilter(sai_precond, sai_filter); HYPRE_ParaSailsSetSym(sai_precond, sai_sym); HYPRE_ParaSailsSetLoadbal(sai_precond, sai_loadbal); HYPRE_ParaSailsSetReuse(sai_precond, sai_reuse); HYPRE_ParaSailsSetLogging(sai_precond, sai_logging); } void HypreParaSails::ResetSAIPrecond(MPI_Comm comm) { HYPRE_Int sai_max_levels; HYPRE_Real sai_threshold; HYPRE_Real sai_filter; HYPRE_Int sai_sym; HYPRE_Real sai_loadbal; HYPRE_Int sai_reuse; HYPRE_Int sai_logging; // hypre_ParAMGData *amg_data = (hypre_ParAMGData *)sai_precond; HYPRE_ParaSailsGetNlevels(sai_precond, &sai_max_levels); HYPRE_ParaSailsGetThresh(sai_precond, &sai_threshold); HYPRE_ParaSailsGetFilter(sai_precond, &sai_filter); HYPRE_ParaSailsGetSym(sai_precond, &sai_sym); HYPRE_ParaSailsGetLoadbal(sai_precond, &sai_loadbal); HYPRE_ParaSailsGetReuse(sai_precond, &sai_reuse); HYPRE_ParaSailsGetLogging(sai_precond, &sai_logging); HYPRE_ParaSailsDestroy(sai_precond); HYPRE_ParaSailsCreate(comm, &sai_precond); HYPRE_ParaSailsSetParams(sai_precond, sai_threshold, sai_max_levels); HYPRE_ParaSailsSetFilter(sai_precond, sai_filter); HYPRE_ParaSailsSetSym(sai_precond, sai_sym); HYPRE_ParaSailsSetLoadbal(sai_precond, sai_loadbal); HYPRE_ParaSailsSetReuse(sai_precond, sai_reuse); HYPRE_ParaSailsSetLogging(sai_precond, sai_logging); } void HypreParaSails::SetOperator(const Operator &op) { const HypreParMatrix *new_A = dynamic_cast(&op); MFEM_VERIFY(new_A, "new Operator must be a HypreParMatrix!"); if (A) { MPI_Comm comm; HYPRE_ParCSRMatrixGetComm(*A, &comm); ResetSAIPrecond(comm); } // update base classes: Operator, Solver, HypreSolver height = new_A->Height(); width = new_A->Width(); A = const_cast(new_A); setup_called = 0; delete X; delete B; B = X = NULL; } void HypreParaSails::SetSymmetry(int sym) { HYPRE_ParaSailsSetSym(sai_precond, sym); } HypreParaSails::~HypreParaSails() { HYPRE_ParaSailsDestroy(sai_precond); } HypreEuclid::HypreEuclid(MPI_Comm comm) { HYPRE_EuclidCreate(comm, &euc_precond); SetDefaultOptions(); } HypreEuclid::HypreEuclid(HypreParMatrix &A) : HypreSolver(&A) { MPI_Comm comm; HYPRE_ParCSRMatrixGetComm(A, &comm); HYPRE_EuclidCreate(comm, &euc_precond); SetDefaultOptions(); } void HypreEuclid::SetDefaultOptions() { int euc_level = 1; // We use ILU(1) int euc_stats = 0; // No logging int euc_mem = 0; // No memory logging int euc_bj = 0; // 1: Use Block Jacobi int euc_ro_sc = 0; // 1: Use Row scaling HYPRE_EuclidSetLevel(euc_precond, euc_level); HYPRE_EuclidSetStats(euc_precond, euc_stats); HYPRE_EuclidSetMem(euc_precond, euc_mem); HYPRE_EuclidSetBJ(euc_precond, euc_bj); HYPRE_EuclidSetRowScale(euc_precond, euc_ro_sc); } void HypreEuclid::ResetEuclidPrecond(MPI_Comm comm) { // Euclid does not seem to offer access to its current configuration, so we // simply reset it to its default options. HYPRE_EuclidDestroy(euc_precond); HYPRE_EuclidCreate(comm, &euc_precond); SetDefaultOptions(); } void HypreEuclid::SetOperator(const Operator &op) { const HypreParMatrix *new_A = dynamic_cast(&op); MFEM_VERIFY(new_A, "new Operator must be a HypreParMatrix!"); if (A) { MPI_Comm comm; HYPRE_ParCSRMatrixGetComm(*new_A, &comm); ResetEuclidPrecond(comm); } // update base classes: Operator, Solver, HypreSolver height = new_A->Height(); width = new_A->Width(); A = const_cast(new_A); setup_called = 0; delete X; delete B; B = X = NULL; } HypreEuclid::~HypreEuclid() { HYPRE_EuclidDestroy(euc_precond); } HypreBoomerAMG::HypreBoomerAMG() { HYPRE_BoomerAMGCreate(&amg_precond); SetDefaultOptions(); } HypreBoomerAMG::HypreBoomerAMG(HypreParMatrix &A) : HypreSolver(&A) { HYPRE_BoomerAMGCreate(&amg_precond); SetDefaultOptions(); } void HypreBoomerAMG::SetDefaultOptions() { // AMG coarsening options: int coarsen_type = 10; // 10 = HMIS, 8 = PMIS, 6 = Falgout, 0 = CLJP int agg_levels = 1; // number of aggressive coarsening levels double theta = 0.25; // strength threshold: 0.25, 0.5, 0.8 // AMG interpolation options: int interp_type = 6; // 6 = extended+i, 0 = classical int Pmax = 4; // max number of elements per row in P // AMG relaxation options: int relax_type = 8; // 8 = l1-GS, 6 = symm. GS, 3 = GS, 18 = l1-Jacobi int relax_sweeps = 1; // relaxation sweeps on each level // Additional options: int print_level = 1; // print AMG iterations? 1 = no, 2 = yes int max_levels = 25; // max number of levels in AMG hierarchy HYPRE_BoomerAMGSetCoarsenType(amg_precond, coarsen_type); HYPRE_BoomerAMGSetAggNumLevels(amg_precond, agg_levels); HYPRE_BoomerAMGSetRelaxType(amg_precond, relax_type); HYPRE_BoomerAMGSetNumSweeps(amg_precond, relax_sweeps); HYPRE_BoomerAMGSetStrongThreshold(amg_precond, theta); HYPRE_BoomerAMGSetInterpType(amg_precond, interp_type); HYPRE_BoomerAMGSetPMaxElmts(amg_precond, Pmax); HYPRE_BoomerAMGSetPrintLevel(amg_precond, print_level); HYPRE_BoomerAMGSetMaxLevels(amg_precond, max_levels); // Use as a preconditioner (one V-cycle, zero tolerance) HYPRE_BoomerAMGSetMaxIter(amg_precond, 1); HYPRE_BoomerAMGSetTol(amg_precond, 0.0); } void HypreBoomerAMG::ResetAMGPrecond() { HYPRE_Int coarsen_type; HYPRE_Int agg_levels; HYPRE_Int relax_type; HYPRE_Int relax_sweeps; HYPRE_Real theta; HYPRE_Int interp_type; HYPRE_Int Pmax; HYPRE_Int print_level; HYPRE_Int dim; HYPRE_Int nrbms = rbms.Size(); HYPRE_Int nodal; HYPRE_Int nodal_diag; HYPRE_Int relax_coarse; HYPRE_Int interp_vec_variant; HYPRE_Int q_max; HYPRE_Int smooth_interp_vectors; HYPRE_Int interp_refine; hypre_ParAMGData *amg_data = (hypre_ParAMGData *)amg_precond; // read options from amg_precond HYPRE_BoomerAMGGetCoarsenType(amg_precond, &coarsen_type); agg_levels = hypre_ParAMGDataAggNumLevels(amg_data); relax_type = hypre_ParAMGDataUserRelaxType(amg_data); relax_sweeps = hypre_ParAMGDataUserNumSweeps(amg_data); HYPRE_BoomerAMGGetStrongThreshold(amg_precond, &theta); hypre_BoomerAMGGetInterpType(amg_precond, &interp_type); HYPRE_BoomerAMGGetPMaxElmts(amg_precond, &Pmax); HYPRE_BoomerAMGGetPrintLevel(amg_precond, &print_level); HYPRE_BoomerAMGGetNumFunctions(amg_precond, &dim); if (nrbms) // elasticity solver options { nodal = hypre_ParAMGDataNodal(amg_data); nodal_diag = hypre_ParAMGDataNodalDiag(amg_data); HYPRE_BoomerAMGGetCycleRelaxType(amg_precond, &relax_coarse, 3); interp_vec_variant = hypre_ParAMGInterpVecVariant(amg_data); q_max = hypre_ParAMGInterpVecQMax(amg_data); smooth_interp_vectors = hypre_ParAMGSmoothInterpVectors(amg_data); interp_refine = hypre_ParAMGInterpRefine(amg_data); } HYPRE_BoomerAMGDestroy(amg_precond); HYPRE_BoomerAMGCreate(&amg_precond); HYPRE_BoomerAMGSetCoarsenType(amg_precond, coarsen_type); HYPRE_BoomerAMGSetAggNumLevels(amg_precond, agg_levels); HYPRE_BoomerAMGSetRelaxType(amg_precond, relax_type); HYPRE_BoomerAMGSetNumSweeps(amg_precond, relax_sweeps); HYPRE_BoomerAMGSetMaxLevels(amg_precond, 25); HYPRE_BoomerAMGSetTol(amg_precond, 0.0); HYPRE_BoomerAMGSetMaxIter(amg_precond, 1); // one V-cycle HYPRE_BoomerAMGSetStrongThreshold(amg_precond, theta); HYPRE_BoomerAMGSetInterpType(amg_precond, interp_type); HYPRE_BoomerAMGSetPMaxElmts(amg_precond, Pmax); HYPRE_BoomerAMGSetPrintLevel(amg_precond, print_level); HYPRE_BoomerAMGSetNumFunctions(amg_precond, dim); if (nrbms) { HYPRE_BoomerAMGSetNodal(amg_precond, nodal); HYPRE_BoomerAMGSetNodalDiag(amg_precond, nodal_diag); HYPRE_BoomerAMGSetCycleRelaxType(amg_precond, relax_coarse, 3); HYPRE_BoomerAMGSetInterpVecVariant(amg_precond, interp_vec_variant); HYPRE_BoomerAMGSetInterpVecQMax(amg_precond, q_max); HYPRE_BoomerAMGSetSmoothInterpVectors(amg_precond, smooth_interp_vectors); HYPRE_BoomerAMGSetInterpRefine(amg_precond, interp_refine); RecomputeRBMs(); HYPRE_BoomerAMGSetInterpVectors(amg_precond, rbms.Size(), rbms.GetData()); } } void HypreBoomerAMG::SetOperator(const Operator &op) { const HypreParMatrix *new_A = dynamic_cast(&op); MFEM_VERIFY(new_A, "new Operator must be a HypreParMatrix!"); if (A) { ResetAMGPrecond(); } // update base classes: Operator, Solver, HypreSolver height = new_A->Height(); width = new_A->Width(); A = const_cast(new_A); setup_called = 0; delete X; delete B; B = X = NULL; } void HypreBoomerAMG::SetSystemsOptions(int dim) { HYPRE_BoomerAMGSetNumFunctions(amg_precond, dim); // More robust options with respect to convergence HYPRE_BoomerAMGSetAggNumLevels(amg_precond, 0); HYPRE_BoomerAMGSetStrongThreshold(amg_precond, 0.5); } // Rotational rigid-body mode functions, used in SetElasticityOptions() static void func_rxy(const Vector &x, Vector &y) { y = 0.0; y(0) = x(1); y(1) = -x(0); } static void func_ryz(const Vector &x, Vector &y) { y = 0.0; y(1) = x(2); y(2) = -x(1); } static void func_rzx(const Vector &x, Vector &y) { y = 0.0; y(2) = x(0); y(0) = -x(2); } void HypreBoomerAMG::RecomputeRBMs() { int nrbms; Array gf_rbms; int dim = fespace->GetParMesh()->Dimension(); for (int i = 0; i < rbms.Size(); i++) { HYPRE_ParVectorDestroy(rbms[i]); } if (dim == 2) { nrbms = 1; VectorFunctionCoefficient coeff_rxy(2, func_rxy); ParGridFunction rbms_rxy(fespace); rbms_rxy.ProjectCoefficient(coeff_rxy); rbms.SetSize(nrbms); gf_rbms.SetSize(nrbms); gf_rbms[0] = rbms_rxy.ParallelAverage(); } else if (dim == 3) { nrbms = 3; VectorFunctionCoefficient coeff_rxy(3, func_rxy); VectorFunctionCoefficient coeff_ryz(3, func_ryz); VectorFunctionCoefficient coeff_rzx(3, func_rzx); ParGridFunction rbms_rxy(fespace); ParGridFunction rbms_ryz(fespace); ParGridFunction rbms_rzx(fespace); rbms_rxy.ProjectCoefficient(coeff_rxy); rbms_ryz.ProjectCoefficient(coeff_ryz); rbms_rzx.ProjectCoefficient(coeff_rzx); rbms.SetSize(nrbms); gf_rbms.SetSize(nrbms); gf_rbms[0] = rbms_rxy.ParallelAverage(); gf_rbms[1] = rbms_ryz.ParallelAverage(); gf_rbms[2] = rbms_rzx.ParallelAverage(); } else { nrbms = 0; rbms.SetSize(nrbms); } // Transfer the RBMs from the ParGridFunction to the HYPRE_ParVector objects for (int i = 0; i < nrbms; i++) { rbms[i] = gf_rbms[i]->StealParVector(); delete gf_rbms[i]; } } void HypreBoomerAMG::SetElasticityOptions(ParFiniteElementSpace *fespace) { // Save the finite element space to support multiple calls to SetOperator() this->fespace = fespace; // Make sure the systems AMG options are set int dim = fespace->GetParMesh()->Dimension(); SetSystemsOptions(dim); // Nodal coarsening options (nodal coarsening is required for this solver) // See hypre's new_ij driver and the paper for descriptions. int nodal = 4; // strength reduction norm: 1, 3 or 4 int nodal_diag = 1; // diagonal in strength matrix: 0, 1 or 2 int relax_coarse = 8; // smoother on the coarsest grid: 8, 99 or 29 // Elasticity interpolation options int interp_vec_variant = 2; // 1 = GM-1, 2 = GM-2, 3 = LN int q_max = 4; // max elements per row for each Q int smooth_interp_vectors = 1; // smooth the rigid-body modes? // Optionally pre-process the interpolation matrix through iterative weight // refinement (this is generally applicable for any system) int interp_refine = 1; HYPRE_BoomerAMGSetNodal(amg_precond, nodal); HYPRE_BoomerAMGSetNodalDiag(amg_precond, nodal_diag); HYPRE_BoomerAMGSetCycleRelaxType(amg_precond, relax_coarse, 3); HYPRE_BoomerAMGSetInterpVecVariant(amg_precond, interp_vec_variant); HYPRE_BoomerAMGSetInterpVecQMax(amg_precond, q_max); HYPRE_BoomerAMGSetSmoothInterpVectors(amg_precond, smooth_interp_vectors); HYPRE_BoomerAMGSetInterpRefine(amg_precond, interp_refine); RecomputeRBMs(); HYPRE_BoomerAMGSetInterpVectors(amg_precond, rbms.Size(), rbms.GetData()); // The above BoomerAMG options may result in singular matrices on the coarse // grids, which are handled correctly in hypre's Solve method, but can produce // hypre errors in the Setup (specifically in the l1 row norm computation). // See the documentation of SetErrorMode() for more details. error_mode = IGNORE_HYPRE_ERRORS; } HypreBoomerAMG::~HypreBoomerAMG() { for (int i = 0; i < rbms.Size(); i++) { HYPRE_ParVectorDestroy(rbms[i]); } HYPRE_BoomerAMGDestroy(amg_precond); } HypreAMS::HypreAMS(ParFiniteElementSpace *edge_fespace) { Init(edge_fespace); } HypreAMS::HypreAMS(HypreParMatrix &A, ParFiniteElementSpace *edge_fespace) : HypreSolver(&A) { Init(edge_fespace); } void HypreAMS::Init(ParFiniteElementSpace *edge_fespace) { int cycle_type = 13; int rlx_type = 2; int rlx_sweeps = 1; double rlx_weight = 1.0; double rlx_omega = 1.0; int amg_coarsen_type = 10; int amg_agg_levels = 1; int amg_rlx_type = 8; double theta = 0.25; int amg_interp_type = 6; int amg_Pmax = 4; int dim = edge_fespace->GetMesh()->Dimension(); int sdim = edge_fespace->GetMesh()->SpaceDimension(); const FiniteElementCollection *edge_fec = edge_fespace->FEColl(); bool trace_space, rt_trace_space; ND_Trace_FECollection *nd_tr_fec = NULL; trace_space = dynamic_cast(edge_fec); rt_trace_space = dynamic_cast(edge_fec); trace_space = trace_space || rt_trace_space; int p = 1; if (edge_fespace->GetNE() > 0) { if (trace_space) { p = edge_fespace->GetFaceOrder(0); if (dim == 2) { p++; } } else { p = edge_fespace->GetOrder(0); } } ParMesh *pmesh = edge_fespace->GetParMesh(); if (rt_trace_space) { nd_tr_fec = new ND_Trace_FECollection(p, dim); edge_fespace = new ParFiniteElementSpace(pmesh, nd_tr_fec); } HYPRE_AMSCreate(&ams); HYPRE_AMSSetDimension(ams, sdim); // 2D H(div) and 3D H(curl) problems HYPRE_AMSSetTol(ams, 0.0); HYPRE_AMSSetMaxIter(ams, 1); // use as a preconditioner HYPRE_AMSSetCycleType(ams, cycle_type); HYPRE_AMSSetPrintLevel(ams, 1); // define the nodal linear finite element space associated with edge_fespace FiniteElementCollection *vert_fec; if (trace_space) { vert_fec = new H1_Trace_FECollection(p, dim); } else { vert_fec = new H1_FECollection(p, dim); } ParFiniteElementSpace *vert_fespace = new ParFiniteElementSpace(pmesh, vert_fec); // generate and set the vertex coordinates if (p == 1) { ParGridFunction x_coord(vert_fespace); ParGridFunction y_coord(vert_fespace); ParGridFunction z_coord(vert_fespace); double *coord; for (int i = 0; i < pmesh->GetNV(); i++) { coord = pmesh -> GetVertex(i); x_coord(i) = coord[0]; y_coord(i) = coord[1]; if (sdim == 3) { z_coord(i) = coord[2]; } } x = x_coord.ParallelProject(); y = y_coord.ParallelProject(); if (sdim == 2) { z = NULL; HYPRE_AMSSetCoordinateVectors(ams, *x, *y, NULL); } else { z = z_coord.ParallelProject(); HYPRE_AMSSetCoordinateVectors(ams, *x, *y, *z); } } else { x = NULL; y = NULL; z = NULL; } // generate and set the discrete gradient ParDiscreteLinearOperator *grad; grad = new ParDiscreteLinearOperator(vert_fespace, edge_fespace); if (trace_space) { grad->AddTraceFaceInterpolator(new GradientInterpolator); } else { grad->AddDomainInterpolator(new GradientInterpolator); } grad->Assemble(); grad->Finalize(); G = grad->ParallelAssemble(); HYPRE_AMSSetDiscreteGradient(ams, *G); delete grad; // generate and set the Nedelec interpolation matrices Pi = Pix = Piy = Piz = NULL; if (p > 1) { ParFiniteElementSpace *vert_fespace_d = new ParFiniteElementSpace(pmesh, vert_fec, sdim, Ordering::byVDIM); ParDiscreteLinearOperator *id_ND; id_ND = new ParDiscreteLinearOperator(vert_fespace_d, edge_fespace); if (trace_space) { id_ND->AddTraceFaceInterpolator(new IdentityInterpolator); } else { id_ND->AddDomainInterpolator(new IdentityInterpolator); } id_ND->Assemble(); id_ND->Finalize(); if (cycle_type < 10) { Pi = id_ND->ParallelAssemble(); } else { Array2D Pi_blocks; id_ND->GetParBlocks(Pi_blocks); Pix = Pi_blocks(0,0); Piy = Pi_blocks(0,1); if (sdim == 3) { Piz = Pi_blocks(0,2); } } delete id_ND; HYPRE_ParCSRMatrix HY_Pi = (Pi) ? (HYPRE_ParCSRMatrix) *Pi : NULL; HYPRE_ParCSRMatrix HY_Pix = (Pix) ? (HYPRE_ParCSRMatrix) *Pix : NULL; HYPRE_ParCSRMatrix HY_Piy = (Piy) ? (HYPRE_ParCSRMatrix) *Piy : NULL; HYPRE_ParCSRMatrix HY_Piz = (Piz) ? (HYPRE_ParCSRMatrix) *Piz : NULL; HYPRE_AMSSetInterpolations(ams, HY_Pi, HY_Pix, HY_Piy, HY_Piz); delete vert_fespace_d; } delete vert_fespace; delete vert_fec; if (rt_trace_space) { delete edge_fespace; delete nd_tr_fec; } // set additional AMS options HYPRE_AMSSetSmoothingOptions(ams, rlx_type, rlx_sweeps, rlx_weight, rlx_omega); HYPRE_AMSSetAlphaAMGOptions(ams, amg_coarsen_type, amg_agg_levels, amg_rlx_type, theta, amg_interp_type, amg_Pmax); HYPRE_AMSSetBetaAMGOptions(ams, amg_coarsen_type, amg_agg_levels, amg_rlx_type, theta, amg_interp_type, amg_Pmax); // The AMS preconditioner may sometimes require inverting singular matrices // with BoomerAMG, which are handled correctly in hypre's Solve method, but // can produce hypre errors in the Setup (specifically in the l1 row norm // computation). See the documentation of SetErrorMode() for more details. error_mode = IGNORE_HYPRE_ERRORS; } void HypreAMS::SetOperator(const Operator &op) { const HypreParMatrix *new_A = dynamic_cast(&op); MFEM_VERIFY(new_A, "new Operator must be a HypreParMatrix!"); // update base classes: Operator, Solver, HypreSolver height = new_A->Height(); width = new_A->Width(); A = const_cast(new_A); setup_called = 0; delete X; delete B; B = X = NULL; } HypreAMS::~HypreAMS() { HYPRE_AMSDestroy(ams); delete x; delete y; delete z; delete G; delete Pi; delete Pix; delete Piy; delete Piz; } void HypreAMS::SetPrintLevel(int print_lvl) { HYPRE_AMSSetPrintLevel(ams, print_lvl); } HypreADS::HypreADS(ParFiniteElementSpace *face_fespace) { Init(face_fespace); } HypreADS::HypreADS(HypreParMatrix &A, ParFiniteElementSpace *face_fespace) : HypreSolver(&A) { Init(face_fespace); } void HypreADS::Init(ParFiniteElementSpace *face_fespace) { int cycle_type = 11; int rlx_type = 2; int rlx_sweeps = 1; double rlx_weight = 1.0; double rlx_omega = 1.0; int amg_coarsen_type = 10; int amg_agg_levels = 1; int amg_rlx_type = 8; double theta = 0.25; int amg_interp_type = 6; int amg_Pmax = 4; int ams_cycle_type = 14; const FiniteElementCollection *face_fec = face_fespace->FEColl(); bool trace_space = (dynamic_cast(face_fec) != NULL); int p = 1; if (face_fespace->GetNE() > 0) { if (trace_space) { p = face_fespace->GetFaceOrder(0) + 1; } else { p = face_fespace->GetOrder(0); } } HYPRE_ADSCreate(&ads); HYPRE_ADSSetTol(ads, 0.0); HYPRE_ADSSetMaxIter(ads, 1); // use as a preconditioner HYPRE_ADSSetCycleType(ads, cycle_type); HYPRE_ADSSetPrintLevel(ads, 1); // define the nodal and edge finite element spaces associated with face_fespace ParMesh *pmesh = (ParMesh *) face_fespace->GetMesh(); FiniteElementCollection *vert_fec, *edge_fec; if (trace_space) { vert_fec = new H1_Trace_FECollection(p, 3); edge_fec = new ND_Trace_FECollection(p, 3); } else { vert_fec = new H1_FECollection(p, 3); edge_fec = new ND_FECollection(p, 3); } ParFiniteElementSpace *vert_fespace = new ParFiniteElementSpace(pmesh, vert_fec); ParFiniteElementSpace *edge_fespace = new ParFiniteElementSpace(pmesh, edge_fec); // generate and set the vertex coordinates if (p == 1) { ParGridFunction x_coord(vert_fespace); ParGridFunction y_coord(vert_fespace); ParGridFunction z_coord(vert_fespace); double *coord; for (int i = 0; i < pmesh->GetNV(); i++) { coord = pmesh -> GetVertex(i); x_coord(i) = coord[0]; y_coord(i) = coord[1]; z_coord(i) = coord[2]; } x = x_coord.ParallelProject(); y = y_coord.ParallelProject(); z = z_coord.ParallelProject(); HYPRE_ADSSetCoordinateVectors(ads, *x, *y, *z); } else { x = NULL; y = NULL; z = NULL; } // generate and set the discrete curl ParDiscreteLinearOperator *curl; curl = new ParDiscreteLinearOperator(edge_fespace, face_fespace); if (trace_space) { curl->AddTraceFaceInterpolator(new CurlInterpolator); } else { curl->AddDomainInterpolator(new CurlInterpolator); } curl->Assemble(); curl->Finalize(); C = curl->ParallelAssemble(); C->CopyColStarts(); // since we'll delete edge_fespace HYPRE_ADSSetDiscreteCurl(ads, *C); delete curl; // generate and set the discrete gradient ParDiscreteLinearOperator *grad; grad = new ParDiscreteLinearOperator(vert_fespace, edge_fespace); if (trace_space) { grad->AddTraceFaceInterpolator(new GradientInterpolator); } else { grad->AddDomainInterpolator(new GradientInterpolator); } grad->Assemble(); grad->Finalize(); G = grad->ParallelAssemble(); G->CopyColStarts(); // since we'll delete vert_fespace G->CopyRowStarts(); // since we'll delete edge_fespace HYPRE_ADSSetDiscreteGradient(ads, *G); delete grad; // generate and set the Nedelec and Raviart-Thomas interpolation matrices RT_Pi = RT_Pix = RT_Piy = RT_Piz = NULL; ND_Pi = ND_Pix = ND_Piy = ND_Piz = NULL; if (p > 1) { ParFiniteElementSpace *vert_fespace_d = new ParFiniteElementSpace(pmesh, vert_fec, 3, Ordering::byVDIM); ParDiscreteLinearOperator *id_ND; id_ND = new ParDiscreteLinearOperator(vert_fespace_d, edge_fespace); if (trace_space) { id_ND->AddTraceFaceInterpolator(new IdentityInterpolator); } else { id_ND->AddDomainInterpolator(new IdentityInterpolator); } id_ND->Assemble(); id_ND->Finalize(); if (ams_cycle_type < 10) { ND_Pi = id_ND->ParallelAssemble(); ND_Pi->CopyColStarts(); // since we'll delete vert_fespace_d ND_Pi->CopyRowStarts(); // since we'll delete edge_fespace } else { Array2D ND_Pi_blocks; id_ND->GetParBlocks(ND_Pi_blocks); ND_Pix = ND_Pi_blocks(0,0); ND_Piy = ND_Pi_blocks(0,1); ND_Piz = ND_Pi_blocks(0,2); } delete id_ND; ParDiscreteLinearOperator *id_RT; id_RT = new ParDiscreteLinearOperator(vert_fespace_d, face_fespace); if (trace_space) { id_RT->AddTraceFaceInterpolator(new NormalInterpolator); } else { id_RT->AddDomainInterpolator(new IdentityInterpolator); } id_RT->Assemble(); id_RT->Finalize(); if (cycle_type < 10) { RT_Pi = id_RT->ParallelAssemble(); RT_Pi->CopyColStarts(); // since we'll delete vert_fespace_d } else { Array2D RT_Pi_blocks; id_RT->GetParBlocks(RT_Pi_blocks); RT_Pix = RT_Pi_blocks(0,0); RT_Piy = RT_Pi_blocks(0,1); RT_Piz = RT_Pi_blocks(0,2); } delete id_RT; HYPRE_ParCSRMatrix HY_RT_Pi, HY_RT_Pix, HY_RT_Piy, HY_RT_Piz; HY_RT_Pi = (RT_Pi) ? (HYPRE_ParCSRMatrix) *RT_Pi : NULL; HY_RT_Pix = (RT_Pix) ? (HYPRE_ParCSRMatrix) *RT_Pix : NULL; HY_RT_Piy = (RT_Piy) ? (HYPRE_ParCSRMatrix) *RT_Piy : NULL; HY_RT_Piz = (RT_Piz) ? (HYPRE_ParCSRMatrix) *RT_Piz : NULL; HYPRE_ParCSRMatrix HY_ND_Pi, HY_ND_Pix, HY_ND_Piy, HY_ND_Piz; HY_ND_Pi = (ND_Pi) ? (HYPRE_ParCSRMatrix) *ND_Pi : NULL; HY_ND_Pix = (ND_Pix) ? (HYPRE_ParCSRMatrix) *ND_Pix : NULL; HY_ND_Piy = (ND_Piy) ? (HYPRE_ParCSRMatrix) *ND_Piy : NULL; HY_ND_Piz = (ND_Piz) ? (HYPRE_ParCSRMatrix) *ND_Piz : NULL; HYPRE_ADSSetInterpolations(ads, HY_RT_Pi, HY_RT_Pix, HY_RT_Piy, HY_RT_Piz, HY_ND_Pi, HY_ND_Pix, HY_ND_Piy, HY_ND_Piz); delete vert_fespace_d; } delete vert_fec; delete vert_fespace; delete edge_fec; delete edge_fespace; // set additional ADS options HYPRE_ADSSetSmoothingOptions(ads, rlx_type, rlx_sweeps, rlx_weight, rlx_omega); HYPRE_ADSSetAMGOptions(ads, amg_coarsen_type, amg_agg_levels, amg_rlx_type, theta, amg_interp_type, amg_Pmax); HYPRE_ADSSetAMSOptions(ads, ams_cycle_type, amg_coarsen_type, amg_agg_levels, amg_rlx_type, theta, amg_interp_type, amg_Pmax); // The ADS preconditioner requires inverting singular matrices with BoomerAMG, // which are handled correctly in hypre's Solve method, but can produce hypre // errors in the Setup (specifically in the l1 row norm computation). See the // documentation of SetErrorMode() for more details. error_mode = IGNORE_HYPRE_ERRORS; } void HypreADS::SetOperator(const Operator &op) { const HypreParMatrix *new_A = dynamic_cast(&op); MFEM_VERIFY(new_A, "new Operator must be a HypreParMatrix!"); // update base classes: Operator, Solver, HypreSolver height = new_A->Height(); width = new_A->Width(); A = const_cast(new_A); setup_called = 0; delete X; delete B; B = X = NULL; } HypreADS::~HypreADS() { HYPRE_ADSDestroy(ads); delete x; delete y; delete z; delete G; delete C; delete RT_Pi; delete RT_Pix; delete RT_Piy; delete RT_Piz; delete ND_Pi; delete ND_Pix; delete ND_Piy; delete ND_Piz; } void HypreADS::SetPrintLevel(int print_lvl) { HYPRE_ADSSetPrintLevel(ads, print_lvl); } HypreLOBPCG::HypreMultiVector::HypreMultiVector(int n, HypreParVector & v, mv_InterfaceInterpreter & interpreter) : hpv(NULL), nv(n) { mv_ptr = mv_MultiVectorCreateFromSampleVector(&interpreter, nv, (HYPRE_ParVector)v); HYPRE_ParVector* vecs = NULL; { mv_TempMultiVector* tmp = (mv_TempMultiVector*)mv_MultiVectorGetData(mv_ptr); vecs = (HYPRE_ParVector*)(tmp -> vector); } hpv = new HypreParVector*[nv]; for (int i=0; iownsVectors = 0; for (int i=0; iSetOwnership(1); } return hpv_ret; } HypreLOBPCG::HypreLOBPCG(MPI_Comm c) : comm(c), myid(0), numProcs(1), nev(10), seed(75), glbSize(-1), part(NULL), multi_vec(NULL), x(NULL), subSpaceProj(NULL) { MPI_Comm_size(comm,&numProcs); MPI_Comm_rank(comm,&myid); HYPRE_ParCSRSetupInterpreter(&interpreter); HYPRE_ParCSRSetupMatvec(&matvec_fn); HYPRE_LOBPCGCreate(&interpreter, &matvec_fn, &lobpcg_solver); } HypreLOBPCG::~HypreLOBPCG() { delete multi_vec; delete x; delete [] part; HYPRE_LOBPCGDestroy(lobpcg_solver); } void HypreLOBPCG::SetTol(double tol) { HYPRE_LOBPCGSetTol(lobpcg_solver, tol); } void HypreLOBPCG::SetRelTol(double rel_tol) { #if MFEM_HYPRE_VERSION >= 21101 HYPRE_LOBPCGSetRTol(lobpcg_solver, rel_tol); #else MFEM_ABORT("This method requires HYPRE version >= 2.11.1"); #endif } void HypreLOBPCG::SetMaxIter(int max_iter) { HYPRE_LOBPCGSetMaxIter(lobpcg_solver, max_iter); } void HypreLOBPCG::SetPrintLevel(int logging) { if (myid == 0) { HYPRE_LOBPCGSetPrintLevel(lobpcg_solver, logging); } } void HypreLOBPCG::SetPrecondUsageMode(int pcg_mode) { HYPRE_LOBPCGSetPrecondUsageMode(lobpcg_solver, pcg_mode); } void HypreLOBPCG::SetPreconditioner(Solver & precond) { HYPRE_LOBPCGSetPrecond(lobpcg_solver, (HYPRE_PtrToSolverFcn)this->PrecondSolve, (HYPRE_PtrToSolverFcn)this->PrecondSetup, (HYPRE_Solver)&precond); } void HypreLOBPCG::SetOperator(Operator & A) { HYPRE_Int locSize = A.Width(); if (HYPRE_AssumedPartitionCheck()) { part = new HYPRE_Int[2]; MPI_Scan(&locSize, &part[1], 1, HYPRE_MPI_INT, MPI_SUM, comm); part[0] = part[1] - locSize; MPI_Allreduce(&locSize, &glbSize, 1, HYPRE_MPI_INT, MPI_SUM, comm); } else { part = new HYPRE_Int[numProcs+1]; MPI_Allgather(&locSize, 1, HYPRE_MPI_INT, &part[1], 1, HYPRE_MPI_INT, comm); part[0] = 0; for (int i=0; iOperatorMatvecCreate; matvec_fn.Matvec = this->OperatorMatvec; matvec_fn.MatvecDestroy = this->OperatorMatvecDestroy; HYPRE_LOBPCGSetup(lobpcg_solver,(HYPRE_Matrix)&A,NULL,NULL); } void HypreLOBPCG::SetMassMatrix(Operator & M) { matvec_fn.MatvecCreate = this->OperatorMatvecCreate; matvec_fn.Matvec = this->OperatorMatvec; matvec_fn.MatvecDestroy = this->OperatorMatvecDestroy; HYPRE_LOBPCGSetupB(lobpcg_solver,(HYPRE_Matrix)&M,NULL); } void HypreLOBPCG::GetEigenvalues(Array & eigs) { // Initialize eigenvalues array with marker values eigs.SetSize(nev); for (int i=0; iGetVector(i); } void HypreLOBPCG::SetInitialVectors(int num_vecs, HypreParVector ** vecs) { // Initialize HypreMultiVector object if necessary if ( multi_vec == NULL ) { MFEM_ASSERT(x != NULL, "In HypreLOBPCG::SetInitialVectors()"); multi_vec = new HypreMultiVector(nev, *x, interpreter); } // Copy the vectors provided for (int i=0; i < min(num_vecs,nev); i++) { multi_vec->GetVector(i) = *vecs[i]; } // Randomize any remaining vectors for (int i=min(num_vecs,nev); i < nev; i++) { multi_vec->GetVector(i).Randomize(seed); } // Ensure all vectors are in the proper subspace if ( subSpaceProj != NULL ) { HypreParVector y(*x); y = multi_vec->GetVector(0); for (int i=1; iMult(multi_vec->GetVector(i), multi_vec->GetVector(i-1)); } subSpaceProj->Mult(y, multi_vec->GetVector(nev-1)); } } void HypreLOBPCG::Solve() { // Initialize HypreMultiVector object if necessary if ( multi_vec == NULL ) { MFEM_ASSERT(x != NULL, "In HypreLOBPCG::Solve()"); multi_vec = new HypreMultiVector(nev, *x, interpreter); multi_vec->Randomize(seed); if ( subSpaceProj != NULL ) { HypreParVector y(*x); y = multi_vec->GetVector(0); for (int i=1; iMult(multi_vec->GetVector(i), multi_vec->GetVector(i-1)); } subSpaceProj->Mult(y, multi_vec->GetVector(nev-1)); } } eigenvalues.SetSize(nev); eigenvalues = NAN; // Perform eigenmode calculation // // The eigenvalues are computed in ascending order (internally the // order is determined by the LAPACK routine 'dsydv'.) HYPRE_LOBPCGSolve(lobpcg_solver, NULL, *multi_vec, eigenvalues); } void * HypreLOBPCG::OperatorMatvecCreate( void *A, void *x ) { void *matvec_data; matvec_data = NULL; return ( matvec_data ); } HYPRE_Int HypreLOBPCG::OperatorMatvec( void *matvec_data, HYPRE_Complex alpha, void *A, void *x, HYPRE_Complex beta, void *y ) { MFEM_VERIFY(alpha == 1.0 && beta == 0.0, "values not supported"); Operator *Aop = (Operator*)A; int width = Aop->Width(); hypre_ParVector * xPar = (hypre_ParVector *)x; hypre_ParVector * yPar = (hypre_ParVector *)y; Vector xVec(xPar->local_vector->data, width); Vector yVec(yPar->local_vector->data, width); Aop->Mult( xVec, yVec ); return 0; } HYPRE_Int HypreLOBPCG::OperatorMatvecDestroy( void *matvec_data ) { return 0; } HYPRE_Int HypreLOBPCG::PrecondSolve(void *solver, void *A, void *b, void *x) { Solver *PC = (Solver*)solver; Operator *OP = (Operator*)A; int width = OP->Width(); hypre_ParVector * bPar = (hypre_ParVector *)b; hypre_ParVector * xPar = (hypre_ParVector *)x; Vector bVec(bPar->local_vector->data, width); Vector xVec(xPar->local_vector->data, width); PC->Mult( bVec, xVec ); return 0; } HYPRE_Int HypreLOBPCG::PrecondSetup(void *solver, void *A, void *b, void *x) { return 0; } HypreAME::HypreAME(MPI_Comm comm) : myid(0), numProcs(1), nev(10), setT(false), ams_precond(NULL), eigenvalues(NULL), multi_vec(NULL), eigenvectors(NULL) { MPI_Comm_size(comm,&numProcs); MPI_Comm_rank(comm,&myid); HYPRE_AMECreate(&ame_solver); HYPRE_AMESetPrintLevel(ame_solver, 0); } HypreAME::~HypreAME() { if ( multi_vec ) { mfem_hypre_TFree(multi_vec); } if ( eigenvectors ) { for (int i=0; i= 21101 HYPRE_AMESetRTol(ame_solver, rel_tol); #else MFEM_ABORT("This method requires HYPRE version >= 2.11.1"); #endif } void HypreAME::SetMaxIter(int max_iter) { HYPRE_AMESetMaxIter(ame_solver, max_iter); } void HypreAME::SetPrintLevel(int logging) { if (myid == 0) { HYPRE_AMESetPrintLevel(ame_solver, logging); } } void HypreAME::SetPreconditioner(HypreSolver & precond) { ams_precond = &precond; } void HypreAME::SetOperator(HypreParMatrix & A) { if ( !setT ) { HYPRE_Solver ams_precond_ptr = (HYPRE_Solver)*ams_precond; ams_precond->SetupFcn()(*ams_precond,A,NULL,NULL); HYPRE_AMESetAMSSolver(ame_solver, ams_precond_ptr); } HYPRE_AMESetup(ame_solver); } void HypreAME::SetMassMatrix(HypreParMatrix & M) { HYPRE_ParCSRMatrix parcsr_M = M; HYPRE_AMESetMassMatrix(ame_solver,(HYPRE_ParCSRMatrix)parcsr_M); } void HypreAME::Solve() { HYPRE_AMESolve(ame_solver); } void HypreAME::GetEigenvalues(Array & eigs) { // Initialize eigenvalues array with marker values eigs.SetSize(nev); eigs = -1.0; if ( eigenvalues == NULL ) { // Grab eigenvalues from AME HYPRE_AMEGetEigenvalues(ame_solver,&eigenvalues); } // Copy eigenvalues to eigs array for (int i=0; iSetOwnership(1); } } HypreParVector & HypreAME::GetEigenvector(unsigned int i) { if ( eigenvectors == NULL ) { this->createDummyVectors(); } return *eigenvectors[i]; } HypreParVector ** HypreAME::StealEigenvectors() { if ( eigenvectors == NULL ) { this->createDummyVectors(); } // Set the local pointers to NULL so that they won't be deleted later HypreParVector ** vecs = eigenvectors; eigenvectors = NULL; multi_vec = NULL; return vecs; } } #endif