// Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced // at the Lawrence Livermore National Laboratory. All Rights reserved. See files // LICENSE and NOTICE for details. LLNL-CODE-806117. // // This file is part of the MFEM library. For more information and source code // availability visit https://mfem.org. // // MFEM is free software; you can redistribute it and/or modify it under the // terms of the BSD-3 license. We welcome feedback and contributions, see file // CONTRIBUTING.md for details. // // --------------------------------------------------------------- // Convert DC: Convert between different types of data collections // --------------------------------------------------------------- // // This tool demonstrates how to convert between MFEM's different concrete // DataCollection options. // // Currently supported data collection type options: // visit: VisItDataCollection (default) // sidre or sidre_hdf5: SidreDataCollection // json: ConduitDataCollection w/ protocol json // conduit_json: ConduitDataCollection w/ protocol conduit_json // conduit_bin: ConduitDataCollection w/ protocol conduit_bin // hdf5: ConduitDataCollection w/ protocol hdf5 // // Compile with: make convert-dc // // Serial sample runs: // convert-dc -s ../../examples/Example5 -st visit -o Example5_Conduit -ot json // // Parallel sample runs: // mpirun -np 4 convert-dc -s ../../examples/Example5-Parallel -st visit // -o Example5-Parallel_Conduit -ot json #include "mfem.hpp" using namespace std; using namespace mfem; DataCollection *create_data_collection(const std::string &dc_name, const std::string &dc_type) { DataCollection *dc = NULL; if (dc_type == "visit") { #ifdef MFEM_USE_MPI dc = new VisItDataCollection(MPI_COMM_WORLD, dc_name); #else dc = new VisItDataCollection(dc_name); #endif } else if ( dc_type == "sidre" || dc_type == "sidre_hdf5") { #ifdef MFEM_USE_SIDRE dc = new SidreDataCollection(dc_name); #else MFEM_ABORT("Must build with MFEM_USE_SIDRE=YES for sidre support."); #endif } else if ( dc_type == "json" || dc_type == "conduit_json" || dc_type == "conduit_bin" || dc_type == "hdf5") { #ifdef MFEM_USE_CONDUIT #ifdef MFEM_USE_MPI ConduitDataCollection *conduit_dc = new ConduitDataCollection(MPI_COMM_WORLD, dc_name); #else ConduitDataCollection *conduit_dc = new ConduitDataCollection(dc_name); #endif conduit_dc->SetProtocol(dc_type); dc = conduit_dc; #else MFEM_ABORT("Must build with MFEM_USE_CONDUIT=YES for conduit support."); #endif } else { MFEM_ABORT("Unsupported Data Collection type:" << dc_type); } return dc; } int main(int argc, char *argv[]) { #ifdef MFEM_USE_MPI MPI_Session mpi; if (!mpi.Root()) { mfem::out.Disable(); mfem::err.Disable(); } #endif // Parse command-line options. const char *src_coll_name = NULL; const char *src_coll_type = "visit"; int src_cycle = 0; const char *out_coll_name = NULL; const char *out_coll_type = "visit"; OptionsParser args(argc, argv); args.AddOption(&src_coll_name, "-s", "--source-root-prefix", "Set the source data collection root file prefix.", true); args.AddOption(&out_coll_name, "-o", "--output-root-prefix", "Set the source data collection root file prefix.", true); args.AddOption(&src_cycle, "-c", "--cycle", "Set the source cycle index to read."); args.AddOption(&src_coll_type, "-st", "--source-type", "Set the source data collection type. Options:\n" "\t visit: VisItDataCollection (default)\n" "\t sidre or sidre_hdf5: SidreDataCollection\n" "\t json: ConduitDataCollection w/ protocol json\n" "\t conduit_json: ConduitDataCollection w/ protocol conduit_json\n" "\t conduit_bin: ConduitDataCollection w/ protocol conduit_bin\n" "\t hdf5: ConduitDataCollection w/ protocol hdf5"); args.AddOption(&out_coll_type, "-ot", "--output-type", "Set the output data collection type. Options:\n" "\t visit: VisItDataCollection (default)\n" "\t sidre or sidre_hdf5: SidreDataCollection\n" "\t json: ConduitDataCollection w/ protocol json\n" "\t conduit_json: ConduitDataCollection w/ protocol conduit_json\n" "\t conduit_bin: ConduitDataCollection w/ protocol conduit_bin\n" "\t hdf5: ConduitDataCollection w/ protocol hdf5"); args.Parse(); if (!args.Good()) { args.PrintUsage(mfem::out); return 1; } args.PrintOptions(mfem::out); DataCollection *src = create_data_collection(std::string(src_coll_name), std::string(src_coll_type)); DataCollection *out = create_data_collection(std::string(out_coll_name), std::string(out_coll_type)); src->Load(src_cycle); if (src->Error() != DataCollection::NO_ERROR) { mfem::out << "Error loading data collection: " << src_coll_name << " (type = " << src_coll_type << ")" << endl; return 1; } out->SetOwnData(false); // add mesh from source dc to output dc #ifdef MFEM_USE_MPI out->SetMesh(MPI_COMM_WORLD,src->GetMesh()); #else out->SetMesh(src->GetMesh()); #endif // propagate the basics out->SetCycle(src->GetCycle()); out->SetTime(src->GetTime()); out->SetTimeStep(src->GetTimeStep()); // loop over all fields in the source dc, and add them to the output dc const DataCollection::FieldMapType &src_fields = src->GetFieldMap(); for (DataCollection::FieldMapType::const_iterator it = src_fields.begin(); it != src_fields.end(); ++it) { out->RegisterField(it->first,it->second); } out->Save(); if (out->Error() != DataCollection::NO_ERROR) { mfem::out << "Error saving data collection: " << out_coll_name << " (type = " << out_coll_type << ")" << endl; return 1; } // cleanup delete src; delete out; return 0; }