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mfem/linalg/densemat.hpp
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2020-03-09 15:36:41 -07:00

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// Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_DENSEMAT
#define MFEM_DENSEMAT
#include "../config/config.hpp"
#include "../general/globals.hpp"
#include "matrix.hpp"
namespace mfem
{
/// Data type dense matrix using column-major storage
class DenseMatrix : public Matrix
{
friend class DenseTensor;
friend class DenseMatrixInverse;
private:
Memory<double> data;
void Eigensystem(Vector &ev, DenseMatrix *evect = NULL);
void Eigensystem(DenseMatrix &b, Vector &ev, DenseMatrix *evect = NULL);
// Auxiliary method used in FNorm2() and FNorm()
void FNorm(double &scale_factor, double &scaled_fnorm2) const;
public:
/** Default constructor for DenseMatrix.
Sets data = NULL and height = width = 0. */
DenseMatrix();
/// Copy constructor
DenseMatrix(const DenseMatrix &);
/// Creates square matrix of size s.
explicit DenseMatrix(int s);
/// Creates rectangular matrix of size m x n.
DenseMatrix(int m, int n);
/// Creates rectangular matrix equal to the transpose of mat.
DenseMatrix(const DenseMatrix &mat, char ch);
/// Construct a DenseMatrix using an existing data array.
/** The DenseMatrix does not assume ownership of the data array, i.e. it will
not delete the array. */
DenseMatrix(double *d, int h, int w)
: Matrix(h, w) { UseExternalData(d, h, w); }
/// Change the data array and the size of the DenseMatrix.
/** The DenseMatrix does not assume ownership of the data array, i.e. it will
not delete the data array @a d. This method should not be used with
DenseMatrix that owns its current data array. */
void UseExternalData(double *d, int h, int w)
{
data.Wrap(d, h*w, false);
height = h; width = w;
}
/// Change the data array and the size of the DenseMatrix.
/** The DenseMatrix does not assume ownership of the data array, i.e. it will
not delete the new array @a d. This method will delete the current data
array, if owned. */
void Reset(double *d, int h, int w)
{ if (OwnsData()) { data.Delete(); } UseExternalData(d, h, w); }
/** Clear the data array and the dimensions of the DenseMatrix. This method
should not be used with DenseMatrix that owns its current data array. */
void ClearExternalData() { data.Reset(); height = width = 0; }
/// Delete the matrix data array (if owned) and reset the matrix state.
void Clear()
{ if (OwnsData()) { data.Delete(); } ClearExternalData(); }
/// For backward compatibility define Size to be synonym of Width()
int Size() const { return Width(); }
/// Change the size of the DenseMatrix to s x s.
void SetSize(int s) { SetSize(s, s); }
/// Change the size of the DenseMatrix to h x w.
void SetSize(int h, int w);
/// Returns the matrix data array.
inline double *Data() const
{ return const_cast<double*>((const double*)data);}
/// Returns the matrix data array.
inline double *GetData() const { return Data(); }
Memory<double> &GetMemory() { return data; }
const Memory<double> &GetMemory() const { return data; }
/// Return the DenseMatrix data (host pointer) ownership flag.
inline bool OwnsData() const { return data.OwnsHostPtr(); }
/// Returns reference to a_{ij}.
inline double &operator()(int i, int j);
/// Returns constant reference to a_{ij}.
inline const double &operator()(int i, int j) const;
/// Matrix inner product: tr(A^t B)
double operator*(const DenseMatrix &m) const;
/// Trace of a square matrix
double Trace() const;
/// Returns reference to a_{ij}.
virtual double &Elem(int i, int j);
/// Returns constant reference to a_{ij}.
virtual const double &Elem(int i, int j) const;
/// Matrix vector multiplication.
void Mult(const double *x, double *y) const;
/// Matrix vector multiplication.
virtual void Mult(const Vector &x, Vector &y) const;
/// Multiply a vector with the transpose matrix.
void MultTranspose(const double *x, double *y) const;
/// Multiply a vector with the transpose matrix.
virtual void MultTranspose(const Vector &x, Vector &y) const;
/// y += A.x
void AddMult(const Vector &x, Vector &y) const;
/// y += A^t x
void AddMultTranspose(const Vector &x, Vector &y) const;
/// y += a * A.x
void AddMult_a(double a, const Vector &x, Vector &y) const;
/// y += a * A^t x
void AddMultTranspose_a(double a, const Vector &x, Vector &y) const;
/// Compute y^t A x
double InnerProduct(const double *x, const double *y) const;
/// LeftScaling this = diag(s) * this
void LeftScaling(const Vector & s);
/// InvLeftScaling this = diag(1./s) * this
void InvLeftScaling(const Vector & s);
/// RightScaling: this = this * diag(s);
void RightScaling(const Vector & s);
/// InvRightScaling: this = this * diag(1./s);
void InvRightScaling(const Vector & s);
/// SymmetricScaling this = diag(sqrt(s)) * this * diag(sqrt(s))
void SymmetricScaling(const Vector & s);
/// InvSymmetricScaling this = diag(sqrt(1./s)) * this * diag(sqrt(1./s))
void InvSymmetricScaling(const Vector & s);
/// Compute y^t A x
double InnerProduct(const Vector &x, const Vector &y) const
{ return InnerProduct((const double *)x, (const double *)y); }
/// Returns a pointer to the inverse matrix.
virtual MatrixInverse *Inverse() const;
/// Replaces the current matrix with its inverse
void Invert();
/// Replaces the current matrix with its square root inverse
void SquareRootInverse();
/// Calculates the determinant of the matrix
/// (optimized for 2x2, 3x3, and 4x4 matrices)
double Det() const;
double Weight() const;
/** @brief Set the matrix to alpha * A, assuming that A has the same
dimensions as the matrix and uses column-major layout. */
void Set(double alpha, const double *A);
/// Set the matrix to alpha * A.
void Set(double alpha, const DenseMatrix &A)
{
SetSize(A.Height(), A.Width());
Set(alpha, A.GetData());
}
/// Adds the matrix A multiplied by the number c to the matrix
void Add(const double c, const DenseMatrix &A);
/// Sets the matrix elements equal to constant c
DenseMatrix &operator=(double c);
/// Copy the matrix entries from the given array
DenseMatrix &operator=(const double *d);
/// Sets the matrix size and elements equal to those of m
DenseMatrix &operator=(const DenseMatrix &m);
DenseMatrix &operator+=(const double *m);
DenseMatrix &operator+=(const DenseMatrix &m);
DenseMatrix &operator-=(const DenseMatrix &m);
DenseMatrix &operator*=(double c);
/// (*this) = -(*this)
void Neg();
/// Take the 2-norm of the columns of A and store in v
void Norm2(double *v) const;
/// Compute the norm ||A|| = max_{ij} |A_{ij}|
double MaxMaxNorm() const;
/// Compute the Frobenius norm of the matrix
double FNorm() const { double s, n2; FNorm(s, n2); return s*sqrt(n2); }
/// Compute the square of the Frobenius norm of the matrix
double FNorm2() const { double s, n2; FNorm(s, n2); return s*s*n2; }
/// Compute eigenvalues of A x = ev x where A = *this
void Eigenvalues(Vector &ev)
{ Eigensystem(ev); }
/// Compute eigenvalues and eigenvectors of A x = ev x where A = *this
void Eigenvalues(Vector &ev, DenseMatrix &evect)
{ Eigensystem(ev, &evect); }
/// Compute eigenvalues and eigenvectors of A x = ev x where A = *this
void Eigensystem(Vector &ev, DenseMatrix &evect)
{ Eigensystem(ev, &evect); }
/** Compute generalized eigenvalues and eigenvectors of A x = ev B x,
where A = *this */
void Eigenvalues(DenseMatrix &b, Vector &ev)
{ Eigensystem(b, ev); }
/// Compute generalized eigenvalues of A x = ev B x, where A = *this
void Eigenvalues(DenseMatrix &b, Vector &ev, DenseMatrix &evect)
{ Eigensystem(b, ev, &evect); }
/** Compute generalized eigenvalues and eigenvectors of A x = ev B x,
where A = *this */
void Eigensystem(DenseMatrix &b, Vector &ev, DenseMatrix &evect)
{ Eigensystem(b, ev, &evect); }
void SingularValues(Vector &sv) const;
int Rank(double tol) const;
/// Return the i-th singular value (decreasing order) of NxN matrix, N=1,2,3.
double CalcSingularvalue(const int i) const;
/** Return the eigenvalues (in increasing order) and eigenvectors of a
2x2 or 3x3 symmetric matrix. */
void CalcEigenvalues(double *lambda, double *vec) const;
void GetRow(int r, Vector &row) const;
void GetColumn(int c, Vector &col) const;
double *GetColumn(int col) { return data + col*height; }
const double *GetColumn(int col) const { return data + col*height; }
void GetColumnReference(int c, Vector &col)
{ col.SetDataAndSize(data + c * height, height); }
void SetRow(int r, const double* row);
void SetRow(int r, const Vector &row);
void SetCol(int c, const double* col);
void SetCol(int c, const Vector &col);
/// Set all entries of a row to the specified value.
void SetRow(int row, double value);
/// Set all entries of a column to the specified value.
void SetCol(int col, double value);
/// Returns the diagonal of the matrix
void GetDiag(Vector &d) const;
/// Returns the l1 norm of the rows of the matrix v_i = sum_j |a_ij|
void Getl1Diag(Vector &l) const;
/// Compute the row sums of the DenseMatrix
void GetRowSums(Vector &l) const;
/// Creates n x n diagonal matrix with diagonal elements c
void Diag(double c, int n);
/// Creates n x n diagonal matrix with diagonal given by diag
void Diag(double *diag, int n);
/// (*this) = (*this)^t
void Transpose();
/// (*this) = A^t
void Transpose(const DenseMatrix &A);
/// (*this) = 1/2 ((*this) + (*this)^t)
void Symmetrize();
void Lump();
/** Given a DShape matrix (from a scalar FE), stored in *this, returns the
CurlShape matrix. If *this is a N by D matrix, then curl is a D*N by
D*(D-1)/2 matrix. The size of curl must be set outside. The dimension D
can be either 2 or 3. */
void GradToCurl(DenseMatrix &curl);
/** Given a DShape matrix (from a scalar FE), stored in *this,
returns the DivShape vector. If *this is a N by dim matrix,
then div is a dim*N vector. The size of div must be set
outside. */
void GradToDiv(Vector &div);
/// Copy rows row1 through row2 from A to *this
void CopyRows(const DenseMatrix &A, int row1, int row2);
/// Copy columns col1 through col2 from A to *this
void CopyCols(const DenseMatrix &A, int col1, int col2);
/// Copy the m x n submatrix of A at row/col offsets Aro/Aco to *this
void CopyMN(const DenseMatrix &A, int m, int n, int Aro, int Aco);
/// Copy matrix A to the location in *this at row_offset, col_offset
void CopyMN(const DenseMatrix &A, int row_offset, int col_offset);
/// Copy matrix A^t to the location in *this at row_offset, col_offset
void CopyMNt(const DenseMatrix &A, int row_offset, int col_offset);
/** Copy the m x n submatrix of A at row/col offsets Aro/Aco to *this at
row_offset, col_offset */
void CopyMN(const DenseMatrix &A, int m, int n, int Aro, int Aco,
int row_offset, int col_offset);
/// Copy c on the diagonal of size n to *this at row_offset, col_offset
void CopyMNDiag(double c, int n, int row_offset, int col_offset);
/// Copy diag on the diagonal of size n to *this at row_offset, col_offset
void CopyMNDiag(double *diag, int n, int row_offset, int col_offset);
/// Copy All rows and columns except m and n from A
void CopyExceptMN(const DenseMatrix &A, int m, int n);
/// Perform (ro+i,co+j)+=A(i,j) for 0<=i<A.Height, 0<=j<A.Width
void AddMatrix(DenseMatrix &A, int ro, int co);
/// Perform (ro+i,co+j)+=a*A(i,j) for 0<=i<A.Height, 0<=j<A.Width
void AddMatrix(double a, const DenseMatrix &A, int ro, int co);
/// Add the matrix 'data' to the Vector 'v' at the given 'offset'
void AddToVector(int offset, Vector &v) const;
/// Get the matrix 'data' from the Vector 'v' at the given 'offset'
void GetFromVector(int offset, const Vector &v);
/** If (dofs[i] < 0 and dofs[j] >= 0) or (dofs[i] >= 0 and dofs[j] < 0)
then (*this)(i,j) = -(*this)(i,j). */
void AdjustDofDirection(Array<int> &dofs);
/// Replace small entries, abs(a_ij) <= eps, with zero.
void Threshold(double eps);
/** Count the number of entries in the matrix for which isfinite
is false, i.e. the entry is a NaN or +/-Inf. */
int CheckFinite() const { return mfem::CheckFinite(data, height*width); }
/// Prints matrix to stream out.
virtual void Print(std::ostream &out = mfem::out, int width_ = 4) const;
virtual void PrintMatlab(std::ostream &out = mfem::out) const;
/// Prints the transpose matrix to stream out.
virtual void PrintT(std::ostream &out = mfem::out, int width_ = 4) const;
/// Invert and print the numerical conditioning of the inversion.
void TestInversion();
long MemoryUsage() const { return data.Capacity() * sizeof(double); }
/// Shortcut for mfem::Read( GetMemory(), TotalSize(), on_dev).
const double *Read(bool on_dev = true) const
{ return mfem::Read(data, Height()*Width(), on_dev); }
/// Shortcut for mfem::Read(GetMemory(), TotalSize(), false).
const double *HostRead() const
{ return mfem::Read(data, Height()*Width(), false); }
/// Shortcut for mfem::Write(GetMemory(), TotalSize(), on_dev).
double *Write(bool on_dev = true)
{ return mfem::Write(data, Height()*Width(), on_dev); }
/// Shortcut for mfem::Write(GetMemory(), TotalSize(), false).
double *HostWrite()
{ return mfem::Write(data, Height()*Width(), false); }
/// Shortcut for mfem::ReadWrite(GetMemory(), TotalSize(), on_dev).
double *ReadWrite(bool on_dev = true)
{ return mfem::ReadWrite(data, Height()*Width(), on_dev); }
/// Shortcut for mfem::ReadWrite(GetMemory(), TotalSize(), false).
double *HostReadWrite()
{ return mfem::ReadWrite(data, Height()*Width(), false); }
/// Destroys dense matrix.
virtual ~DenseMatrix();
};
/// C = A + alpha*B
void Add(const DenseMatrix &A, const DenseMatrix &B,
double alpha, DenseMatrix &C);
/// C = alpha*A + beta*B
void Add(double alpha, const double *A,
double beta, const double *B, DenseMatrix &C);
/// C = alpha*A + beta*B
void Add(double alpha, const DenseMatrix &A,
double beta, const DenseMatrix &B, DenseMatrix &C);
/// @brief Solves the dense linear system, `A * X = B` for `X`
///
/// @param [in,out] A the square matrix for the linear system
/// @param [in,out] X the rhs vector, B, on input, the solution, X, on output.
/// @param [in] TOL optional fuzzy comparison tolerance. Defaults to 1e-9.
///
/// @return status set to true if successful, otherwise, false.
///
/// @note This routine may replace the contents of the input Matrix, A, with the
/// corresponding LU factorization of the matrix. Matrices of size 1x1 and
/// 2x2 are handled explicitly.
///
/// @pre A.IsSquare() == true
/// @pre X != nullptr
bool LinearSolve(DenseMatrix& A, double* X, double TOL = 1.e-9);
/// Matrix matrix multiplication. A = B * C.
void Mult(const DenseMatrix &b, const DenseMatrix &c, DenseMatrix &a);
/// Matrix matrix multiplication. A += B * C.
void AddMult(const DenseMatrix &b, const DenseMatrix &c, DenseMatrix &a);
/// Matrix matrix multiplication. A += alpha * B * C.
void AddMult_a(double alpha, const DenseMatrix &b, const DenseMatrix &c,
DenseMatrix &a);
/** Calculate the adjugate of a matrix (for NxN matrices, N=1,2,3) or the matrix
adj(A^t.A).A^t for rectangular matrices (2x1, 3x1, or 3x2). This operation
is well defined even when the matrix is not full rank. */
void CalcAdjugate(const DenseMatrix &a, DenseMatrix &adja);
/// Calculate the transposed adjugate of a matrix (for NxN matrices, N=1,2,3)
void CalcAdjugateTranspose(const DenseMatrix &a, DenseMatrix &adjat);
/** Calculate the inverse of a matrix (for NxN matrices, N=1,2,3) or the
left inverse (A^t.A)^{-1}.A^t (for 2x1, 3x1, or 3x2 matrices) */
void CalcInverse(const DenseMatrix &a, DenseMatrix &inva);
/// Calculate the inverse transpose of a matrix (for NxN matrices, N=1,2,3)
void CalcInverseTranspose(const DenseMatrix &a, DenseMatrix &inva);
/** For a given Nx(N-1) (N=2,3) matrix J, compute a vector n such that
n_k = (-1)^{k+1} det(J_k), k=1,..,N, where J_k is the matrix J with the
k-th row removed. Note: J^t.n = 0, det([n|J])=|n|^2=det(J^t.J). */
void CalcOrtho(const DenseMatrix &J, Vector &n);
/// Calculate the matrix A.At
void MultAAt(const DenseMatrix &a, DenseMatrix &aat);
/// ADAt = A D A^t, where D is diagonal
void MultADAt(const DenseMatrix &A, const Vector &D, DenseMatrix &ADAt);
/// ADAt += A D A^t, where D is diagonal
void AddMultADAt(const DenseMatrix &A, const Vector &D, DenseMatrix &ADAt);
/// Multiply a matrix A with the transpose of a matrix B: A*Bt
void MultABt(const DenseMatrix &A, const DenseMatrix &B, DenseMatrix &ABt);
/// ADBt = A D B^t, where D is diagonal
void MultADBt(const DenseMatrix &A, const Vector &D,
const DenseMatrix &B, DenseMatrix &ADBt);
/// ABt += A * B^t
void AddMultABt(const DenseMatrix &A, const DenseMatrix &B, DenseMatrix &ABt);
/// ADBt = A D B^t, where D is diagonal
void AddMultADBt(const DenseMatrix &A, const Vector &D,
const DenseMatrix &B, DenseMatrix &ADBt);
/// ABt += a * A * B^t
void AddMult_a_ABt(double a, const DenseMatrix &A, const DenseMatrix &B,
DenseMatrix &ABt);
/// Multiply the transpose of a matrix A with a matrix B: At*B
void MultAtB(const DenseMatrix &A, const DenseMatrix &B, DenseMatrix &AtB);
/// AAt += a * A * A^t
void AddMult_a_AAt(double a, const DenseMatrix &A, DenseMatrix &AAt);
/// AAt = a * A * A^t
void Mult_a_AAt(double a, const DenseMatrix &A, DenseMatrix &AAt);
/// Make a matrix from a vector V.Vt
void MultVVt(const Vector &v, DenseMatrix &vvt);
void MultVWt(const Vector &v, const Vector &w, DenseMatrix &VWt);
/// VWt += v w^t
void AddMultVWt(const Vector &v, const Vector &w, DenseMatrix &VWt);
/// VVt += v v^t
void AddMultVVt(const Vector &v, DenseMatrix &VWt);
/// VWt += a * v w^t
void AddMult_a_VWt(const double a, const Vector &v, const Vector &w,
DenseMatrix &VWt);
/// VVt += a * v v^t
void AddMult_a_VVt(const double a, const Vector &v, DenseMatrix &VVt);
/** Class that can compute LU factorization of external data and perform various
operations with the factored data. */
class LUFactors
{
public:
double *data;
int *ipiv;
#ifdef MFEM_USE_LAPACK
static const int ipiv_base = 1;
#else
static const int ipiv_base = 0;
#endif
/** With this constructor, the (public) data and ipiv members should be set
explicitly before calling class methods. */
LUFactors() { }
LUFactors(double *data_, int *ipiv_) : data(data_), ipiv(ipiv_) { }
/**
* @brief Compute the LU factorization of the current matrix
*
* Factorize the current matrix of size (m x m) overwriting it with the
* LU factors. The factorization is such that L.U = P.A, where A is the
* original matrix and P is a permutation matrix represented by ipiv.
*
* @param [in] m size of the square matrix
* @param [in] TOL optional fuzzy comparison tolerance. Defaults to 0.0.
*
* @return status set to true if successful, otherwise, false.
*/
bool Factor(int m, double TOL = 0.0);
/** Assuming L.U = P.A factored data of size (m x m), compute |A|
from the diagonal values of U and the permutation information. */
double Det(int m) const;
/** Assuming L.U = P.A factored data of size (m x m), compute X <- A X,
for a matrix X of size (m x n). */
void Mult(int m, int n, double *X) const;
/** Assuming L.U = P.A factored data of size (m x m), compute
X <- L^{-1} P X, for a matrix X of size (m x n). */
void LSolve(int m, int n, double *X) const;
/** Assuming L.U = P.A factored data of size (m x m), compute
X <- U^{-1} X, for a matrix X of size (m x n). */
void USolve(int m, int n, double *X) const;
/** Assuming L.U = P.A factored data of size (m x m), compute X <- A^{-1} X,
for a matrix X of size (m x n). */
void Solve(int m, int n, double *X) const;
/** Assuming L.U = P.A factored data of size (m x m), compute X <- X A^{-1},
for a matrix X of size (n x m). */
void RightSolve(int m, int n, double *X) const;
/// Assuming L.U = P.A factored data of size (m x m), compute X <- A^{-1}.
void GetInverseMatrix(int m, double *X) const;
/** Given an (n x m) matrix A21, compute X2 <- X2 - A21 X1, for matrices X1,
and X2 of size (m x r) and (n x r), respectively. */
static void SubMult(int m, int n, int r, const double *A21,
const double *X1, double *X2);
/** Assuming P.A = L.U factored data of size (m x m), compute the 2x2 block
decomposition:
| P 0 | | A A12 | = | L 0 | | U U12 |
| 0 I | | A21 A22 | | L21 I | | 0 S22 |
where A12, A21, and A22 are matrices of size (m x n), (n x m), and
(n x n), respectively. The blocks are overwritten as follows:
A12 <- U12 = L^{-1} P A12
A21 <- L21 = A21 U^{-1}
A22 <- S22 = A22 - L21 U12.
The block S22 is the Schur complement. */
void BlockFactor(int m, int n, double *A12, double *A21, double *A22) const;
/** Given BlockFactor()'d data, perform the forward block solve for the
linear system:
| A A12 | | X1 | = | B1 |
| A21 A22 | | X2 | | B2 |
written in the factored form:
| L 0 | | U U12 | | X1 | = | P 0 | | B1 |
| L21 I | | 0 S22 | | X2 | | 0 I | | B2 |.
The resulting blocks Y1, Y2 solve the system:
| L 0 | | Y1 | = | P 0 | | B1 |
| L21 I | | Y2 | | 0 I | | B2 |
The blocks are overwritten as follows:
B1 <- Y1 = L^{-1} P B1
B2 <- Y2 = B2 - L21 Y1 = B2 - A21 A^{-1} B1
The blocks B1/Y1 and B2/Y2 are of size (m x r) and (n x r), respectively.
The Schur complement system is given by: S22 X2 = Y2. */
void BlockForwSolve(int m, int n, int r, const double *L21,
double *B1, double *B2) const;
/** Given BlockFactor()'d data, perform the backward block solve in
| U U12 | | X1 | = | Y1 |
| 0 S22 | | X2 | | Y2 |.
The input is the solution block X2 and the block Y1 resulting from
BlockForwSolve(). The result block X1 overwrites input block Y1:
Y1 <- X1 = U^{-1} (Y1 - U12 X2). */
void BlockBackSolve(int m, int n, int r, const double *U12,
const double *X2, double *Y1) const;
};
/** Data type for inverse of square dense matrix.
Stores LU factors */
class DenseMatrixInverse : public MatrixInverse
{
private:
const DenseMatrix *a;
LUFactors lu;
public:
/// Default constructor.
DenseMatrixInverse() : a(NULL), lu(NULL, NULL) { }
/** Creates square dense matrix. Computes factorization of mat
and stores LU factors. */
DenseMatrixInverse(const DenseMatrix &mat);
/// Same as above but does not factorize the matrix.
DenseMatrixInverse(const DenseMatrix *mat);
/// Get the size of the inverse matrix
int Size() const { return Width(); }
/// Factor the current DenseMatrix, *a
void Factor();
/// Factor a new DenseMatrix of the same size
void Factor(const DenseMatrix &mat);
virtual void SetOperator(const Operator &op);
/// Matrix vector multiplication with the inverse of dense matrix.
virtual void Mult(const Vector &x, Vector &y) const;
/// Multiply the inverse matrix by another matrix: X = A^{-1} B.
void Mult(const DenseMatrix &B, DenseMatrix &X) const;
/// Multiply the inverse matrix by another matrix: X <- A^{-1} X.
void Mult(DenseMatrix &X) const { lu.Solve(width, X.Width(), X.Data()); }
/// Compute and return the inverse matrix in Ainv.
void GetInverseMatrix(DenseMatrix &Ainv) const;
/// Compute the determinant of the original DenseMatrix using the LU factors.
double Det() const { return lu.Det(width); }
/// Print the numerical conditioning of the inversion: ||A^{-1} A - I||.
void TestInversion();
/// Destroys dense inverse matrix.
virtual ~DenseMatrixInverse();
};
class DenseMatrixEigensystem
{
DenseMatrix &mat;
Vector EVal;
DenseMatrix EVect;
Vector ev;
int n;
#ifdef MFEM_USE_LAPACK
double *work;
char jobz, uplo;
int lwork, info;
#endif
public:
DenseMatrixEigensystem(DenseMatrix &m);
DenseMatrixEigensystem(const DenseMatrixEigensystem &other);
void Eval();
Vector &Eigenvalues() { return EVal; }
DenseMatrix &Eigenvectors() { return EVect; }
double Eigenvalue(int i) { return EVal(i); }
const Vector &Eigenvector(int i)
{
ev.SetData(EVect.Data() + i * EVect.Height());
return ev;
}
~DenseMatrixEigensystem();
};
class DenseMatrixSVD
{
Vector sv;
int m, n;
#ifdef MFEM_USE_LAPACK
double *work;
char jobu, jobvt;
int lwork, info;
#endif
void Init();
public:
DenseMatrixSVD(DenseMatrix &M);
DenseMatrixSVD(int h, int w);
void Eval(DenseMatrix &M);
Vector &Singularvalues() { return sv; }
double Singularvalue(int i) { return sv(i); }
~DenseMatrixSVD();
};
class Table;
/// Rank 3 tensor (array of matrices)
class DenseTensor
{
private:
DenseMatrix Mk;
Memory<double> tdata;
int nk;
public:
DenseTensor()
{
nk = 0;
tdata.Reset();
}
DenseTensor(int i, int j, int k)
: Mk(NULL, i, j)
{
nk = k;
tdata.New(i*j*k);
}
/// Copy constructor: deep copy
DenseTensor(const DenseTensor &other)
: Mk(NULL, other.Mk.height, other.Mk.width), nk(other.nk)
{
const int size = Mk.Height()*Mk.Width()*nk;
if (size > 0)
{
tdata.New(size, other.tdata.GetMemoryType());
tdata.CopyFrom(other.tdata, size);
}
else
{
tdata.Reset();
}
}
int SizeI() const { return Mk.Height(); }
int SizeJ() const { return Mk.Width(); }
int SizeK() const { return nk; }
int TotalSize() const { return SizeI()*SizeJ()*SizeK(); }
void SetSize(int i, int j, int k)
{
const MemoryType mt = tdata.GetMemoryType();
tdata.Delete();
Mk.UseExternalData(NULL, i, j);
nk = k;
tdata.New(i*j*k, mt);
}
void UseExternalData(double *ext_data, int i, int j, int k)
{
tdata.Delete();
Mk.UseExternalData(NULL, i, j);
nk = k;
tdata.Wrap(ext_data, i*j*k, false);
}
/// Sets the tensor elements equal to constant c
DenseTensor &operator=(double c);
DenseMatrix &operator()(int k)
{
MFEM_ASSERT_INDEX_IN_RANGE(k, 0, SizeK());
Mk.data = Memory<double>(GetData(k), SizeI()*SizeJ(), false);
return Mk;
}
const DenseMatrix &operator()(int k) const
{ return const_cast<DenseTensor&>(*this)(k); }
double &operator()(int i, int j, int k)
{
MFEM_ASSERT_INDEX_IN_RANGE(i, 0, SizeI());
MFEM_ASSERT_INDEX_IN_RANGE(j, 0, SizeJ());
MFEM_ASSERT_INDEX_IN_RANGE(k, 0, SizeK());
return tdata[i+SizeI()*(j+SizeJ()*k)];
}
const double &operator()(int i, int j, int k) const
{
MFEM_ASSERT_INDEX_IN_RANGE(i, 0, SizeI());
MFEM_ASSERT_INDEX_IN_RANGE(j, 0, SizeJ());
MFEM_ASSERT_INDEX_IN_RANGE(k, 0, SizeK());
return tdata[i+SizeI()*(j+SizeJ()*k)];
}
double *GetData(int k)
{
MFEM_ASSERT_INDEX_IN_RANGE(k, 0, SizeK());
return tdata+k*Mk.Height()*Mk.Width();
}
double *Data() { return tdata; }
const double *Data() const { return tdata; }
Memory<double> &GetMemory() { return tdata; }
const Memory<double> &GetMemory() const { return tdata; }
/** Matrix-vector product from unassembled element matrices, assuming both
'x' and 'y' use the same elem_dof table. */
void AddMult(const Table &elem_dof, const Vector &x, Vector &y) const;
void Clear()
{ UseExternalData(NULL, 0, 0, 0); }
long MemoryUsage() const { return nk*Mk.MemoryUsage(); }
/// Shortcut for mfem::Read( GetMemory(), TotalSize(), on_dev).
const double *Read(bool on_dev = true) const
{ return mfem::Read(tdata, Mk.Height()*Mk.Width()*nk, on_dev); }
/// Shortcut for mfem::Read(GetMemory(), TotalSize(), false).
const double *HostRead() const
{ return mfem::Read(tdata, Mk.Height()*Mk.Width()*nk, false); }
/// Shortcut for mfem::Write(GetMemory(), TotalSize(), on_dev).
double *Write(bool on_dev = true)
{ return mfem::Write(tdata, Mk.Height()*Mk.Width()*nk, on_dev); }
/// Shortcut for mfem::Write(GetMemory(), TotalSize(), false).
double *HostWrite()
{ return mfem::Write(tdata, Mk.Height()*Mk.Width()*nk, false); }
/// Shortcut for mfem::ReadWrite(GetMemory(), TotalSize(), on_dev).
double *ReadWrite(bool on_dev = true)
{ return mfem::ReadWrite(tdata, Mk.Height()*Mk.Width()*nk, on_dev); }
/// Shortcut for mfem::ReadWrite(GetMemory(), TotalSize(), false).
double *HostReadWrite()
{ return mfem::ReadWrite(tdata, Mk.Height()*Mk.Width()*nk, false); }
~DenseTensor() { tdata.Delete(); }
};
// Inline methods
inline double &DenseMatrix::operator()(int i, int j)
{
MFEM_ASSERT(data && i >= 0 && i < height && j >= 0 && j < width, "");
return data[i+j*height];
}
inline const double &DenseMatrix::operator()(int i, int j) const
{
MFEM_ASSERT(data && i >= 0 && i < height && j >= 0 && j < width, "");
return data[i+j*height];
}
} // namespace mfem
#endif