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mfem/fem/restriction.cpp
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// Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "restriction.hpp"
#include "gridfunc.hpp"
#include "fespace.hpp"
#include "../general/forall.hpp"
namespace mfem
{
ElementRestriction::ElementRestriction(const FiniteElementSpace &f,
ElementDofOrdering e_ordering)
: fes(f),
ne(fes.GetNE()),
vdim(fes.GetVDim()),
byvdim(fes.GetOrdering() == Ordering::byVDIM),
ndofs(fes.GetNDofs()),
dof(ne > 0 ? fes.GetFE(0)->GetDof() : 0),
nedofs(ne*dof),
offsets(ndofs+1),
indices(ne*dof),
gatherMap(ne*dof)
{
// Assuming all finite elements are the same.
height = vdim*ne*dof;
width = fes.GetVSize();
const bool dof_reorder = (e_ordering == ElementDofOrdering::LEXICOGRAPHIC);
const int *dof_map = NULL;
if (dof_reorder && ne > 0)
{
for (int e = 0; e < ne; ++e)
{
const FiniteElement *fe = fes.GetFE(e);
const TensorBasisElement* el =
dynamic_cast<const TensorBasisElement*>(fe);
if (el) { continue; }
mfem_error("Finite element not suitable for lexicographic ordering");
}
const FiniteElement *fe = fes.GetFE(0);
const TensorBasisElement* el =
dynamic_cast<const TensorBasisElement*>(fe);
const Array<int> &fe_dof_map = el->GetDofMap();
MFEM_VERIFY(fe_dof_map.Size() > 0, "invalid dof map");
dof_map = fe_dof_map.GetData();
}
const Table& e2dTable = fes.GetElementToDofTable();
const int* elementMap = e2dTable.GetJ();
// We will be keeping a count of how many local nodes point to its global dof
for (int i = 0; i <= ndofs; ++i)
{
offsets[i] = 0;
}
for (int e = 0; e < ne; ++e)
{
for (int d = 0; d < dof; ++d)
{
const int sgid = elementMap[dof*e + d]; // signed
const int gid = (sgid >= 0) ? sgid : -1 - sgid;
++offsets[gid + 1];
}
}
// Aggregate to find offsets for each global dof
for (int i = 1; i <= ndofs; ++i)
{
offsets[i] += offsets[i - 1];
}
// For each global dof, fill in all local nodes that point to it
for (int e = 0; e < ne; ++e)
{
for (int d = 0; d < dof; ++d)
{
const int sdid = dof_reorder ? dof_map[d] : 0; // signed
const int did = (!dof_reorder)?d:(sdid >= 0 ? sdid : -1-sdid);
const int sgid = elementMap[dof*e + did]; // signed
const int gid = (sgid >= 0) ? sgid : -1-sgid;
const int lid = dof*e + d;
const bool plus = (sgid >= 0 && sdid >= 0) || (sgid < 0 && sdid < 0);
gatherMap[lid] = plus ? gid : -1-gid;
indices[offsets[gid]++] = plus ? lid : -1-lid;
}
}
// We shifted the offsets vector by 1 by using it as a counter.
// Now we shift it back.
for (int i = ndofs; i > 0; --i)
{
offsets[i] = offsets[i - 1];
}
offsets[0] = 0;
}
void ElementRestriction::Mult(const Vector& x, Vector& y) const
{
// Assumes all elements have the same number of dofs
const int nd = dof;
const int vd = vdim;
const bool t = byvdim;
auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
auto d_y = Reshape(y.Write(), nd, vd, ne);
auto d_gatherMap = gatherMap.Read();
MFEM_FORALL(i, dof*ne,
{
const int gid = d_gatherMap[i];
const bool plus = gid >= 0;
const int j = plus ? gid : -1-gid;
for (int c = 0; c < vd; ++c)
{
const double dofValue = d_x(t?c:j, t?j:c);
d_y(i % nd, c, i / nd) = plus ? dofValue : -dofValue;
}
});
}
void ElementRestriction::MultUnsigned(const Vector& x, Vector& y) const
{
// Assumes all elements have the same number of dofs
const int nd = dof;
const int vd = vdim;
const bool t = byvdim;
auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
auto d_y = Reshape(y.Write(), nd, vd, ne);
auto d_gatherMap = gatherMap.Read();
MFEM_FORALL(i, dof*ne,
{
const int gid = d_gatherMap[i];
const int j = gid >= 0 ? gid : -1-gid;
for (int c = 0; c < vd; ++c)
{
d_y(i % nd, c, i / nd) = d_x(t?c:j, t?j:c);
}
});
}
void ElementRestriction::MultTranspose(const Vector& x, Vector& y) const
{
// Assumes all elements have the same number of dofs
const int nd = dof;
const int vd = vdim;
const bool t = byvdim;
auto d_offsets = offsets.Read();
auto d_indices = indices.Read();
auto d_x = Reshape(x.Read(), nd, vd, ne);
auto d_y = Reshape(y.Write(), t?vd:ndofs, t?ndofs:vd);
MFEM_FORALL(i, ndofs,
{
const int offset = d_offsets[i];
const int nextOffset = d_offsets[i + 1];
for (int c = 0; c < vd; ++c)
{
double dofValue = 0;
for (int j = offset; j < nextOffset; ++j)
{
const int idx_j = (d_indices[j] >= 0) ? d_indices[j] : -1 - d_indices[j];
dofValue += (d_indices[j] >= 0) ? d_x(idx_j % nd, c,
idx_j / nd) : -d_x(idx_j % nd, c, idx_j / nd);
}
d_y(t?c:i,t?i:c) = dofValue;
}
});
}
void ElementRestriction::MultTransposeUnsigned(const Vector& x, Vector& y) const
{
// Assumes all elements have the same number of dofs
const int nd = dof;
const int vd = vdim;
const bool t = byvdim;
auto d_offsets = offsets.Read();
auto d_indices = indices.Read();
auto d_x = Reshape(x.Read(), nd, vd, ne);
auto d_y = Reshape(y.Write(), t?vd:ndofs, t?ndofs:vd);
MFEM_FORALL(i, ndofs,
{
const int offset = d_offsets[i];
const int nextOffset = d_offsets[i + 1];
for (int c = 0; c < vd; ++c)
{
double dofValue = 0;
for (int j = offset; j < nextOffset; ++j)
{
const int idx_j = (d_indices[j] >= 0) ? d_indices[j] : -1 - d_indices[j];
dofValue += d_x(idx_j % nd, c, idx_j / nd);
}
d_y(t?c:i,t?i:c) = dofValue;
}
});
}
void ElementRestriction::BooleanMask(Vector& y) const
{
// Assumes all elements have the same number of dofs
const int nd = dof;
const int vd = vdim;
const bool t = byvdim;
Array<char> processed(vd * ndofs);
processed = 0;
auto d_offsets = offsets.HostRead();
auto d_indices = indices.HostRead();
auto d_x = Reshape(processed.HostReadWrite(), t?vd:ndofs, t?ndofs:vd);
auto d_y = Reshape(y.HostWrite(), nd, vd, ne);
for (int i = 0; i < ndofs; ++i)
{
const int offset = d_offsets[i];
const int nextOffset = d_offsets[i+1];
for (int c = 0; c < vd; ++c)
{
for (int j = offset; j < nextOffset; ++j)
{
const int idx_j = d_indices[j];
if (d_x(t?c:i,t?i:c))
{
d_y(idx_j % nd, c, idx_j / nd) = 0.0;
}
else
{
d_y(idx_j % nd, c, idx_j / nd) = 1.0;
d_x(t?c:i,t?i:c) = 1;
}
}
}
}
}
void ElementRestriction::FillSparseMatrix(const Vector &mat_ea,
SparseMatrix &mat) const
{
mat.GetMemoryI().New(mat.Height()+1, mat.GetMemoryI().GetMemoryType());
const int nnz = FillI(mat);
mat.GetMemoryJ().New(nnz, mat.GetMemoryJ().GetMemoryType());
mat.GetMemoryData().New(nnz, mat.GetMemoryData().GetMemoryType());
FillJAndData(mat_ea, mat);
}
template <int MaxNbNbr>
static MFEM_HOST_DEVICE int GetMinElt(const int *my_elts, const int nbElts,
const int *nbr_elts, const int nbrNbElts)
{
// Building the intersection
int inter[MaxNbNbr];
int cpt = 0;
for (int i = 0; i < nbElts; i++)
{
const int e_i = my_elts[i];
for (int j = 0; j < nbrNbElts; j++)
{
if (e_i==nbr_elts[j])
{
inter[cpt] = e_i;
cpt++;
}
}
}
// Finding the minimum
int min = inter[0];
for (int i = 1; i < cpt; i++)
{
if (inter[i] < min)
{
min = inter[i];
}
}
return min;
}
/** Returns the index where a non-zero entry should be added and increment the
number of non-zeros for the row i_L. */
static MFEM_HOST_DEVICE int GetAndIncrementNnzIndex(const int i_L, int* I)
{
int ind = AtomicAdd(I[i_L],1);
return ind;
}
int ElementRestriction::FillI(SparseMatrix &mat) const
{
static constexpr int Max = MaxNbNbr;
const int all_dofs = ndofs;
const int vd = vdim;
const int elt_dofs = dof;
auto I = mat.ReadWriteI();
auto d_offsets = offsets.Read();
auto d_indices = indices.Read();
auto d_gatherMap = gatherMap.Read();
MFEM_FORALL(i_L, vd*all_dofs+1,
{
I[i_L] = 0;
});
MFEM_FORALL(e, ne,
{
for (int i = 0; i < elt_dofs; i++)
{
int i_elts[Max];
const int i_E = e*elt_dofs + i;
const int i_L = d_gatherMap[i_E];
const int i_offset = d_offsets[i_L];
const int i_nextOffset = d_offsets[i_L+1];
const int i_nbElts = i_nextOffset - i_offset;
for (int e_i = 0; e_i < i_nbElts; ++e_i)
{
const int i_E = d_indices[i_offset+e_i];
i_elts[e_i] = i_E/elt_dofs;
}
for (int j = 0; j < elt_dofs; j++)
{
const int j_E = e*elt_dofs + j;
const int j_L = d_gatherMap[j_E];
const int j_offset = d_offsets[j_L];
const int j_nextOffset = d_offsets[j_L+1];
const int j_nbElts = j_nextOffset - j_offset;
if (i_nbElts == 1 || j_nbElts == 1) // no assembly required
{
GetAndIncrementNnzIndex(i_L, I);
}
else // assembly required
{
int j_elts[Max];
for (int e_j = 0; e_j < j_nbElts; ++e_j)
{
const int j_E = d_indices[j_offset+e_j];
const int elt = j_E/elt_dofs;
j_elts[e_j] = elt;
}
int min_e = GetMinElt<Max>(i_elts, i_nbElts, j_elts, j_nbElts);
if (e == min_e) // add the nnz only once
{
GetAndIncrementNnzIndex(i_L, I);
}
}
}
}
});
// We need to sum the entries of I, we do it on CPU as it is very sequential.
auto h_I = mat.HostReadWriteI();
const int nTdofs = vd*all_dofs;
int sum = 0;
for (int i = 0; i < nTdofs; i++)
{
const int nnz = h_I[i];
h_I[i] = sum;
sum+=nnz;
}
h_I[nTdofs] = sum;
// We return the number of nnz
return h_I[nTdofs];
}
void ElementRestriction::FillJAndData(const Vector &ea_data,
SparseMatrix &mat) const
{
static constexpr int Max = MaxNbNbr;
const int all_dofs = ndofs;
const int vd = vdim;
const int elt_dofs = dof;
auto I = mat.ReadWriteI();
auto J = mat.WriteJ();
auto Data = mat.WriteData();
auto d_offsets = offsets.Read();
auto d_indices = indices.Read();
auto d_gatherMap = gatherMap.Read();
auto mat_ea = Reshape(ea_data.Read(), elt_dofs, elt_dofs, ne);
MFEM_FORALL(e, ne,
{
for (int i = 0; i < elt_dofs; i++)
{
int i_elts[Max];
int i_B[Max];
const int i_E = e*elt_dofs + i;
const int i_L = d_gatherMap[i_E];
const int i_offset = d_offsets[i_L];
const int i_nextOffset = d_offsets[i_L+1];
const int i_nbElts = i_nextOffset - i_offset;
for (int e_i = 0; e_i < i_nbElts; ++e_i)
{
const int i_E = d_indices[i_offset+e_i];
i_elts[e_i] = i_E/elt_dofs;
i_B[e_i] = i_E%elt_dofs;
}
for (int j = 0; j < elt_dofs; j++)
{
const int j_E = e*elt_dofs + j;
const int j_L = d_gatherMap[j_E];
const int j_offset = d_offsets[j_L];
const int j_nextOffset = d_offsets[j_L+1];
const int j_nbElts = j_nextOffset - j_offset;
if (i_nbElts == 1 || j_nbElts == 1) // no assembly required
{
const int nnz = GetAndIncrementNnzIndex(i_L, I);
J[nnz] = j_L;
Data[nnz] = mat_ea(j,i,e);
}
else // assembly required
{
int j_elts[Max];
int j_B[Max];
for (int e_j = 0; e_j < j_nbElts; ++e_j)
{
const int j_E = d_indices[j_offset+e_j];
const int elt = j_E/elt_dofs;
j_elts[e_j] = elt;
j_B[e_j] = j_E%elt_dofs;
}
int min_e = GetMinElt<Max>(i_elts, i_nbElts, j_elts, j_nbElts);
if (e == min_e) // add the nnz only once
{
double val = 0.0;
for (int i = 0; i < i_nbElts; i++)
{
const int e_i = i_elts[i];
const int i_Bloc = i_B[i];
for (int j = 0; j < j_nbElts; j++)
{
const int e_j = j_elts[j];
const int j_Bloc = j_B[j];
if (e_i == e_j)
{
val += mat_ea(j_Bloc, i_Bloc, e_i);
}
}
}
const int nnz = GetAndIncrementNnzIndex(i_L, I);
J[nnz] = j_L;
Data[nnz] = val;
}
}
}
}
});
// We need to shift again the entries of I, we do it on CPU as it is very
// sequential.
auto h_I = mat.HostReadWriteI();
const int size = vd*all_dofs;
for (int i = 0; i < size; i++)
{
h_I[size-i] = h_I[size-(i+1)];
}
h_I[0] = 0;
}
L2ElementRestriction::L2ElementRestriction(const FiniteElementSpace &fes)
: ne(fes.GetNE()),
vdim(fes.GetVDim()),
byvdim(fes.GetOrdering() == Ordering::byVDIM),
ndof(ne > 0 ? fes.GetFE(0)->GetDof() : 0),
ndofs(fes.GetNDofs())
{
height = vdim*ne*ndof;
width = vdim*ne*ndof;
}
void L2ElementRestriction::Mult(const Vector &x, Vector &y) const
{
const int nd = ndof;
const int vd = vdim;
const bool t = byvdim;
auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
auto d_y = Reshape(y.Write(), nd, vd, ne);
MFEM_FORALL(i, ndofs,
{
const int idx = i;
const int dof = idx % nd;
const int e = idx / nd;
for (int c = 0; c < vd; ++c)
{
d_y(dof, c, e) = d_x(t?c:idx, t?idx:c);
}
});
}
void L2ElementRestriction::MultTranspose(const Vector &x, Vector &y) const
{
const int nd = ndof;
const int vd = vdim;
const bool t = byvdim;
auto d_x = Reshape(x.Read(), nd, vd, ne);
auto d_y = Reshape(y.Write(), t?vd:ndofs, t?ndofs:vd);
MFEM_FORALL(i, ndofs,
{
const int idx = i;
const int dof = idx % nd;
const int e = idx / nd;
for (int c = 0; c < vd; ++c)
{
d_y(t?c:idx,t?idx:c) = d_x(dof, c, e);
}
});
}
void L2ElementRestriction::FillI(SparseMatrix &mat) const
{
const int elem_dofs = ndof;
const int vd = vdim;
auto I = mat.WriteI();
MFEM_FORALL(dof, ne*elem_dofs*vd,
{
I[dof] = elem_dofs;
});
}
static MFEM_HOST_DEVICE int AddNnz(const int iE, int *I, const int dofs)
{
int val = AtomicAdd(I[iE],dofs);
return val;
}
void L2ElementRestriction::FillJAndData(const Vector &ea_data,
SparseMatrix &mat) const
{
const int elem_dofs = ndof;
const int vd = vdim;
auto I = mat.ReadWriteI();
auto J = mat.WriteJ();
auto Data = mat.WriteData();
auto mat_ea = Reshape(ea_data.Read(), elem_dofs, elem_dofs, ne);
MFEM_FORALL(iE, ne*elem_dofs*vd,
{
const int offset = AddNnz(iE,I,elem_dofs);
const int e = iE/elem_dofs;
const int i = iE%elem_dofs;
for (int j = 0; j < elem_dofs; j++)
{
J[offset+j] = e*elem_dofs+j;
Data[offset+j] = mat_ea(j,i,e);
}
});
}
// Return the face degrees of freedom returned in Lexicographic order.
void GetFaceDofs(const int dim, const int face_id,
const int dof1d, Array<int> &faceMap)
{
switch (dim)
{
case 1:
switch (face_id)
{
case 0: // WEST
faceMap[0] = 0;
break;
case 1: // EAST
faceMap[0] = dof1d-1;
break;
}
break;
case 2:
switch (face_id)
{
case 0: // SOUTH
for (int i = 0; i < dof1d; ++i)
{
faceMap[i] = i;
}
break;
case 1: // EAST
for (int i = 0; i < dof1d; ++i)
{
faceMap[i] = dof1d-1 + i*dof1d;
}
break;
case 2: // NORTH
for (int i = 0; i < dof1d; ++i)
{
faceMap[i] = (dof1d-1)*dof1d + i;
}
break;
case 3: // WEST
for (int i = 0; i < dof1d; ++i)
{
faceMap[i] = i*dof1d;
}
break;
}
break;
case 3:
switch (face_id)
{
case 0: // BOTTOM
for (int i = 0; i < dof1d; ++i)
{
for (int j = 0; j < dof1d; ++j)
{
faceMap[i+j*dof1d] = i + j*dof1d;
}
}
break;
case 1: // SOUTH
for (int i = 0; i < dof1d; ++i)
{
for (int j = 0; j < dof1d; ++j)
{
faceMap[i+j*dof1d] = i + j*dof1d*dof1d;
}
}
break;
case 2: // EAST
for (int i = 0; i < dof1d; ++i)
{
for (int j = 0; j < dof1d; ++j)
{
faceMap[i+j*dof1d] = dof1d-1 + i*dof1d + j*dof1d*dof1d;
}
}
break;
case 3: // NORTH
for (int i = 0; i < dof1d; ++i)
{
for (int j = 0; j < dof1d; ++j)
{
faceMap[i+j*dof1d] = (dof1d-1)*dof1d + i + j*dof1d*dof1d;
}
}
break;
case 4: // WEST
for (int i = 0; i < dof1d; ++i)
{
for (int j = 0; j < dof1d; ++j)
{
faceMap[i+j*dof1d] = i*dof1d + j*dof1d*dof1d;
}
}
break;
case 5: // TOP
for (int i = 0; i < dof1d; ++i)
{
for (int j = 0; j < dof1d; ++j)
{
faceMap[i+j*dof1d] = (dof1d-1)*dof1d*dof1d + i + j*dof1d;
}
}
break;
}
break;
}
}
H1FaceRestriction::H1FaceRestriction(const FiniteElementSpace &fes,
const ElementDofOrdering e_ordering,
const FaceType type)
: fes(fes),
nf(fes.GetNFbyType(type)),
vdim(fes.GetVDim()),
byvdim(fes.GetOrdering() == Ordering::byVDIM),
ndofs(fes.GetNDofs()),
dof(nf > 0 ? fes.GetFaceElement(0)->GetDof() : 0),
nfdofs(nf*dof),
scatter_indices(nf*dof),
offsets(ndofs+1),
gather_indices(nf*dof)
{
if (nf==0) { return; }
// If fespace == H1
const FiniteElement *fe = fes.GetFE(0);
const TensorBasisElement *tfe = dynamic_cast<const TensorBasisElement*>(fe);
MFEM_VERIFY(tfe != NULL &&
(tfe->GetBasisType()==BasisType::GaussLobatto ||
tfe->GetBasisType()==BasisType::Positive),
"Only Gauss-Lobatto and Bernstein basis are supported in "
"H1FaceRestriction.");
MFEM_VERIFY(fes.GetMesh()->Conforming(),
"Non-conforming meshes not yet supported with partial assembly.");
// Assuming all finite elements are using Gauss-Lobatto.
height = vdim*nf*dof;
width = fes.GetVSize();
const bool dof_reorder = (e_ordering == ElementDofOrdering::LEXICOGRAPHIC);
if (dof_reorder && nf > 0)
{
for (int f = 0; f < fes.GetNF(); ++f)
{
const FiniteElement *fe = fes.GetFaceElement(f);
const TensorBasisElement* el =
dynamic_cast<const TensorBasisElement*>(fe);
if (el) { continue; }
mfem_error("Finite element not suitable for lexicographic ordering");
}
const FiniteElement *fe = fes.GetFaceElement(0);
const TensorBasisElement* el =
dynamic_cast<const TensorBasisElement*>(fe);
const Array<int> &fe_dof_map = el->GetDofMap();
MFEM_VERIFY(fe_dof_map.Size() > 0, "invalid dof map");
}
const TensorBasisElement* el =
dynamic_cast<const TensorBasisElement*>(fe);
const int *dof_map = el->GetDofMap().GetData();
const Table& e2dTable = fes.GetElementToDofTable();
const int* elementMap = e2dTable.GetJ();
Array<int> faceMap(dof);
int e1, e2;
int inf1, inf2;
int face_id;
int orientation;
const int dof1d = fes.GetFE(0)->GetOrder()+1;
const int elem_dofs = fes.GetFE(0)->GetDof();
const int dim = fes.GetMesh()->SpaceDimension();
// Computation of scatter_indices
int f_ind = 0;
for (int f = 0; f < fes.GetNF(); ++f)
{
fes.GetMesh()->GetFaceElements(f, &e1, &e2);
fes.GetMesh()->GetFaceInfos(f, &inf1, &inf2);
orientation = inf1 % 64;
face_id = inf1 / 64;
if ((type==FaceType::Interior && (e2>=0 || (e2<0 && inf2>=0))) ||
(type==FaceType::Boundary && e2<0 && inf2<0) )
{
// Assumes Gauss-Lobatto basis
if (dof_reorder)
{
if (orientation != 0)
{
mfem_error("FaceRestriction used on degenerated mesh.");
}
GetFaceDofs(dim, face_id, dof1d, faceMap); // Only for hex
}
else
{
mfem_error("FaceRestriction not yet implemented for this type of "
"element.");
// TODO Something with GetFaceDofs?
}
for (int d = 0; d < dof; ++d)
{
const int face_dof = faceMap[d];
const int did = (!dof_reorder)?face_dof:dof_map[face_dof];
const int gid = elementMap[e1*elem_dofs + did];
const int lid = dof*f_ind + d;
scatter_indices[lid] = gid;
}
f_ind++;
}
}
MFEM_VERIFY(f_ind==nf, "Unexpected number of faces.");
// Computation of gather_indices
for (int i = 0; i <= ndofs; ++i)
{
offsets[i] = 0;
}
f_ind = 0;
for (int f = 0; f < fes.GetNF(); ++f)
{
fes.GetMesh()->GetFaceElements(f, &e1, &e2);
fes.GetMesh()->GetFaceInfos(f, &inf1, &inf2);
orientation = inf1 % 64;
face_id = inf1 / 64;
if ((type==FaceType::Interior && (e2>=0 || (e2<0 && inf2>=0))) ||
(type==FaceType::Boundary && e2<0 && inf2<0) )
{
GetFaceDofs(dim, face_id, dof1d, faceMap);
for (int d = 0; d < dof; ++d)
{
const int face_dof = faceMap[d];
const int did = (!dof_reorder)?face_dof:dof_map[face_dof];
const int gid = elementMap[e1*elem_dofs + did];
++offsets[gid + 1];
}
f_ind++;
}
}
MFEM_VERIFY(f_ind==nf, "Unexpected number of faces.");
for (int i = 1; i <= ndofs; ++i)
{
offsets[i] += offsets[i - 1];
}
f_ind = 0;
for (int f = 0; f < fes.GetNF(); ++f)
{
fes.GetMesh()->GetFaceElements(f, &e1, &e2);
fes.GetMesh()->GetFaceInfos(f, &inf1, &inf2);
orientation = inf1 % 64;
face_id = inf1 / 64;
if ((type==FaceType::Interior && (e2>=0 || (e2<0 && inf2>=0))) ||
(type==FaceType::Boundary && e2<0 && inf2<0) )
{
GetFaceDofs(dim, face_id, dof1d, faceMap);
for (int d = 0; d < dof; ++d)
{
const int face_dof = faceMap[d];
const int did = (!dof_reorder)?face_dof:dof_map[face_dof];
const int gid = elementMap[e1*elem_dofs + did];
const int lid = dof*f_ind + d;
gather_indices[offsets[gid]++] = lid;
}
f_ind++;
}
}
MFEM_VERIFY(f_ind==nf, "Unexpected number of faces.");
for (int i = ndofs; i > 0; --i)
{
offsets[i] = offsets[i - 1];
}
offsets[0] = 0;
}
void H1FaceRestriction::Mult(const Vector& x, Vector& y) const
{
// Assumes all elements have the same number of dofs
const int nd = dof;
const int vd = vdim;
const bool t = byvdim;
auto d_indices = scatter_indices.Read();
auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
auto d_y = Reshape(y.Write(), nd, vd, nf);
MFEM_FORALL(i, nfdofs,
{
const int idx = d_indices[i];
const int dof = i % nd;
const int face = i / nd;
for (int c = 0; c < vd; ++c)
{
d_y(dof, c, face) = d_x(t?c:idx, t?idx:c);
}
});
}
void H1FaceRestriction::MultTranspose(const Vector& x, Vector& y) const
{
// Assumes all elements have the same number of dofs
const int nd = dof;
const int vd = vdim;
const bool t = byvdim;
auto d_offsets = offsets.Read();
auto d_indices = gather_indices.Read();
auto d_x = Reshape(x.Read(), nd, vd, nf);
auto d_y = Reshape(y.Write(), t?vd:ndofs, t?ndofs:vd);
MFEM_FORALL(i, ndofs,
{
const int offset = d_offsets[i];
const int nextOffset = d_offsets[i + 1];
for (int c = 0; c < vd; ++c)
{
double dofValue = 0;
for (int j = offset; j < nextOffset; ++j)
{
const int idx_j = d_indices[j];
dofValue += d_x(idx_j % nd, c, idx_j / nd);
}
d_y(t?c:i,t?i:c) += dofValue;
}
});
}
static int ToLexOrdering2D(const int face_id, const int size1d, const int i)
{
if (face_id==2 || face_id==3)
{
return size1d-1-i;
}
else
{
return i;
}
}
static int PermuteFace2D(const int face_id1, const int face_id2,
const int orientation,
const int size1d, const int index)
{
int new_index;
// Convert from lex ordering
if (face_id1==2 || face_id1==3)
{
new_index = size1d-1-index;
}
else
{
new_index = index;
}
// Permute based on face orientations
if (orientation==1)
{
new_index = size1d-1-new_index;
}
return ToLexOrdering2D(face_id2, size1d, new_index);
}
static int ToLexOrdering3D(const int face_id, const int size1d, const int i,
const int j)
{
if (face_id==2 || face_id==1 || face_id==5)
{
return i + j*size1d;
}
else if (face_id==3 || face_id==4)
{
return (size1d-1-i) + j*size1d;
}
else // face_id==0
{
return i + (size1d-1-j)*size1d;
}
}
static int PermuteFace3D(const int face_id1, const int face_id2,
const int orientation,
const int size1d, const int index)
{
int i=0, j=0, new_i=0, new_j=0;
i = index%size1d;
j = index/size1d;
// Convert from lex ordering
if (face_id1==3 || face_id1==4)
{
i = size1d-1-i;
}
else if (face_id1==0)
{
j = size1d-1-j;
}
// Permute based on face orientations
switch (orientation)
{
case 0:
new_i = i;
new_j = j;
break;
case 1:
new_i = j;
new_j = i;
break;
case 2:
new_i = j;
new_j = (size1d-1-i);
break;
case 3:
new_i = (size1d-1-i);
new_j = j;
break;
case 4:
new_i = (size1d-1-i);
new_j = (size1d-1-j);
break;
case 5:
new_i = (size1d-1-j);
new_j = (size1d-1-i);
break;
case 6:
new_i = (size1d-1-j);
new_j = i;
break;
case 7:
new_i = i;
new_j = (size1d-1-j);
break;
}
return ToLexOrdering3D(face_id2, size1d, new_i, new_j);
}
// Permute dofs or quads on a face for e2 to match with the ordering of e1
int PermuteFaceL2(const int dim, const int face_id1,
const int face_id2, const int orientation,
const int size1d, const int index)
{
switch (dim)
{
case 1:
return 0;
case 2:
return PermuteFace2D(face_id1, face_id2, orientation, size1d, index);
case 3:
return PermuteFace3D(face_id1, face_id2, orientation, size1d, index);
default:
mfem_error("Unsupported dimension.");
return 0;
}
}
L2FaceRestriction::L2FaceRestriction(const FiniteElementSpace &fes,
const FaceType type,
const L2FaceValues m)
: fes(fes),
nf(fes.GetNFbyType(type)),
ne(fes.GetNE()),
vdim(fes.GetVDim()),
byvdim(fes.GetOrdering() == Ordering::byVDIM),
ndofs(fes.GetNDofs()),
dof(nf > 0 ?
fes.GetTraceElement(0, fes.GetMesh()->GetFaceBaseGeometry(0))->GetDof()
: 0),
elemDofs(fes.GetFE(0)->GetDof()),
m(m),
nfdofs(nf*dof),
scatter_indices1(nf*dof),
scatter_indices2(m==L2FaceValues::DoubleValued?nf*dof:0),
offsets(ndofs+1),
gather_indices((m==L2FaceValues::DoubleValued? 2 : 1)*nf*dof)
{
}
L2FaceRestriction::L2FaceRestriction(const FiniteElementSpace &fes,
const ElementDofOrdering e_ordering,
const FaceType type,
const L2FaceValues m)
: L2FaceRestriction(fes, type, m)
{
// If fespace == L2
const FiniteElement *fe = fes.GetFE(0);
const TensorBasisElement *tfe = dynamic_cast<const TensorBasisElement*>(fe);
MFEM_VERIFY(tfe != NULL &&
(tfe->GetBasisType()==BasisType::GaussLobatto ||
tfe->GetBasisType()==BasisType::Positive),
"Only Gauss-Lobatto and Bernstein basis are supported in "
"L2FaceRestriction.");
MFEM_VERIFY(fes.GetMesh()->Conforming(),
"Non-conforming meshes not yet supported with partial assembly.");
if (nf==0) { return; }
height = (m==L2FaceValues::DoubleValued? 2 : 1)*vdim*nf*dof;
width = fes.GetVSize();
const bool dof_reorder = (e_ordering == ElementDofOrdering::LEXICOGRAPHIC);
if (!dof_reorder)
{
mfem_error("Non-Tensor L2FaceRestriction not yet implemented.");
}
if (dof_reorder && nf > 0)
{
for (int f = 0; f < fes.GetNF(); ++f)
{
const FiniteElement *fe =
fes.GetTraceElement(f, fes.GetMesh()->GetFaceBaseGeometry(f));
const TensorBasisElement* el =
dynamic_cast<const TensorBasisElement*>(fe);
if (el) { continue; }
mfem_error("Finite element not suitable for lexicographic ordering");
}
}
const Table& e2dTable = fes.GetElementToDofTable();
const int* elementMap = e2dTable.GetJ();
Array<int> faceMap1(dof), faceMap2(dof);
int e1, e2;
int inf1, inf2;
int face_id1, face_id2;
int orientation;
const int dof1d = fes.GetFE(0)->GetOrder()+1;
const int elem_dofs = fes.GetFE(0)->GetDof();
const int dim = fes.GetMesh()->SpaceDimension();
// Computation of scatter indices
int f_ind=0;
for (int f = 0; f < fes.GetNF(); ++f)
{
fes.GetMesh()->GetFaceElements(f, &e1, &e2);
fes.GetMesh()->GetFaceInfos(f, &inf1, &inf2);
if (dof_reorder)
{
orientation = inf1 % 64;
face_id1 = inf1 / 64;
GetFaceDofs(dim, face_id1, dof1d, faceMap1); // Only for hex
orientation = inf2 % 64;
face_id2 = inf2 / 64;
GetFaceDofs(dim, face_id2, dof1d, faceMap2); // Only for hex
}
else
{
mfem_error("FaceRestriction not yet implemented for this type of "
"element.");
// TODO Something with GetFaceDofs?
}
if ((type==FaceType::Interior && e2>=0) ||
(type==FaceType::Boundary && e2<0))
{
for (int d = 0; d < dof; ++d)
{
const int face_dof = faceMap1[d];
const int did = face_dof;
const int gid = elementMap[e1*elem_dofs + did];
const int lid = dof*f_ind + d;
scatter_indices1[lid] = gid;
}
if (m==L2FaceValues::DoubleValued)
{
for (int d = 0; d < dof; ++d)
{
if (type==FaceType::Interior && e2>=0) // interior face
{
const int pd = PermuteFaceL2(dim, face_id1, face_id2,
orientation, dof1d, d);
const int face_dof = faceMap2[pd];
const int did = face_dof;
const int gid = elementMap[e2*elem_dofs + did];
const int lid = dof*f_ind + d;
scatter_indices2[lid] = gid;
}
else if (type==FaceType::Boundary && e2<0) // true boundary face
{
const int lid = dof*f_ind + d;
scatter_indices2[lid] = -1;
}
}
}
f_ind++;
}
}
MFEM_VERIFY(f_ind==nf, "Unexpected number of faces.");
// Computation of gather_indices
for (int i = 0; i <= ndofs; ++i)
{
offsets[i] = 0;
}
f_ind = 0;
for (int f = 0; f < fes.GetNF(); ++f)
{
fes.GetMesh()->GetFaceElements(f, &e1, &e2);
fes.GetMesh()->GetFaceInfos(f, &inf1, &inf2);
if ((type==FaceType::Interior && (e2>=0 || (e2<0 && inf2>=0))) ||
(type==FaceType::Boundary && e2<0 && inf2<0) )
{
orientation = inf1 % 64;
face_id1 = inf1 / 64;
GetFaceDofs(dim, face_id1, dof1d, faceMap1);
orientation = inf2 % 64;
face_id2 = inf2 / 64;
GetFaceDofs(dim, face_id2, dof1d, faceMap2);
for (int d = 0; d < dof; ++d)
{
const int did = faceMap1[d];
const int gid = elementMap[e1*elem_dofs + did];
++offsets[gid + 1];
}
if (m==L2FaceValues::DoubleValued)
{
for (int d = 0; d < dof; ++d)
{
if (type==FaceType::Interior && e2>=0) // interior face
{
const int pd = PermuteFaceL2(dim, face_id1, face_id2,
orientation, dof1d, d);
const int did = faceMap2[pd];
const int gid = elementMap[e2*elem_dofs + did];
++offsets[gid + 1];
}
}
}
f_ind++;
}
}
MFEM_VERIFY(f_ind==nf, "Unexpected number of faces.");
for (int i = 1; i <= ndofs; ++i)
{
offsets[i] += offsets[i - 1];
}
f_ind = 0;
for (int f = 0; f < fes.GetNF(); ++f)
{
fes.GetMesh()->GetFaceElements(f, &e1, &e2);
fes.GetMesh()->GetFaceInfos(f, &inf1, &inf2);
if ((type==FaceType::Interior && (e2>=0 || (e2<0 && inf2>=0))) ||
(type==FaceType::Boundary && e2<0 && inf2<0) )
{
orientation = inf1 % 64;
face_id1 = inf1 / 64;
GetFaceDofs(dim, face_id1, dof1d, faceMap1);
orientation = inf2 % 64;
face_id2 = inf2 / 64;
GetFaceDofs(dim, face_id2, dof1d, faceMap2);
for (int d = 0; d < dof; ++d)
{
const int did = faceMap1[d];
const int gid = elementMap[e1*elem_dofs + did];
const int lid = dof*f_ind + d;
// We don't shift lid to express that it's e1 of f
gather_indices[offsets[gid]++] = lid;
}
if (m==L2FaceValues::DoubleValued)
{
for (int d = 0; d < dof; ++d)
{
if (type==FaceType::Interior && e2>=0) // interior face
{
const int pd = PermuteFaceL2(dim, face_id1, face_id2,
orientation, dof1d, d);
const int did = faceMap2[pd];
const int gid = elementMap[e2*elem_dofs + did];
const int lid = dof*f_ind + d;
// We shift lid to express that it's e2 of f
gather_indices[offsets[gid]++] = nfdofs + lid;
}
}
}
f_ind++;
}
}
MFEM_VERIFY(f_ind==nf, "Unexpected number of faces.");
for (int i = ndofs; i > 0; --i)
{
offsets[i] = offsets[i - 1];
}
offsets[0] = 0;
}
void L2FaceRestriction::Mult(const Vector& x, Vector& y) const
{
// Assumes all elements have the same number of dofs
const int nd = dof;
const int vd = vdim;
const bool t = byvdim;
if (m==L2FaceValues::DoubleValued)
{
auto d_indices1 = scatter_indices1.Read();
auto d_indices2 = scatter_indices2.Read();
auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
auto d_y = Reshape(y.Write(), nd, vd, 2, nf);
MFEM_FORALL(i, nfdofs,
{
const int dof = i % nd;
const int face = i / nd;
const int idx1 = d_indices1[i];
for (int c = 0; c < vd; ++c)
{
d_y(dof, c, 0, face) = d_x(t?c:idx1, t?idx1:c);
}
const int idx2 = d_indices2[i];
for (int c = 0; c < vd; ++c)
{
d_y(dof, c, 1, face) = idx2==-1 ? 0.0 : d_x(t?c:idx2, t?idx2:c);
}
});
}
else
{
auto d_indices1 = scatter_indices1.Read();
auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
auto d_y = Reshape(y.Write(), nd, vd, nf);
MFEM_FORALL(i, nfdofs,
{
const int dof = i % nd;
const int face = i / nd;
const int idx1 = d_indices1[i];
for (int c = 0; c < vd; ++c)
{
d_y(dof, c, face) = d_x(t?c:idx1, t?idx1:c);
}
});
}
}
void L2FaceRestriction::MultTranspose(const Vector& x, Vector& y) const
{
// Assumes all elements have the same number of dofs
const int nd = dof;
const int vd = vdim;
const bool t = byvdim;
const int dofs = nfdofs;
auto d_offsets = offsets.Read();
auto d_indices = gather_indices.Read();
if (m == L2FaceValues::DoubleValued)
{
auto d_x = Reshape(x.Read(), nd, vd, 2, nf);
auto d_y = Reshape(y.Write(), t?vd:ndofs, t?ndofs:vd);
MFEM_FORALL(i, ndofs,
{
const int offset = d_offsets[i];
const int nextOffset = d_offsets[i + 1];
for (int c = 0; c < vd; ++c)
{
double dofValue = 0;
for (int j = offset; j < nextOffset; ++j)
{
int idx_j = d_indices[j];
bool isE1 = idx_j < dofs;
idx_j = isE1 ? idx_j : idx_j - dofs;
dofValue += isE1 ?
d_x(idx_j % nd, c, 0, idx_j / nd)
:d_x(idx_j % nd, c, 1, idx_j / nd);
}
d_y(t?c:i,t?i:c) += dofValue;
}
});
}
else
{
auto d_x = Reshape(x.Read(), nd, vd, nf);
auto d_y = Reshape(y.Write(), t?vd:ndofs, t?ndofs:vd);
MFEM_FORALL(i, ndofs,
{
const int offset = d_offsets[i];
const int nextOffset = d_offsets[i + 1];
for (int c = 0; c < vd; ++c)
{
double dofValue = 0;
for (int j = offset; j < nextOffset; ++j)
{
int idx_j = d_indices[j];
dofValue += d_x(idx_j % nd, c, idx_j / nd);
}
d_y(t?c:i,t?i:c) += dofValue;
}
});
}
}
void L2FaceRestriction::FillI(SparseMatrix &mat,
SparseMatrix &face_mat) const
{
const int face_dofs = dof;
auto d_indices1 = scatter_indices1.Read();
auto d_indices2 = scatter_indices2.Read();
auto I = mat.ReadWriteI();
MFEM_FORALL(fdof, nf*face_dofs,
{
const int iE1 = d_indices1[fdof];
const int iE2 = d_indices2[fdof];
AddNnz(iE1,I,face_dofs);
AddNnz(iE2,I,face_dofs);
});
}
void L2FaceRestriction::FillJAndData(const Vector &ea_data,
SparseMatrix &mat,
SparseMatrix &face_mat) const
{
const int face_dofs = dof;
auto d_indices1 = scatter_indices1.Read();
auto d_indices2 = scatter_indices2.Read();
auto I = mat.ReadWriteI();
auto mat_fea = Reshape(ea_data.Read(), face_dofs, face_dofs, 2, nf);
auto J = mat.WriteJ();
auto Data = mat.WriteData();
MFEM_FORALL(fdof, nf*face_dofs,
{
const int f = fdof/face_dofs;
const int iF = fdof%face_dofs;
const int iE1 = d_indices1[f*face_dofs+iF];
const int iE2 = d_indices2[f*face_dofs+iF];
const int offset1 = AddNnz(iE1,I,face_dofs);
const int offset2 = AddNnz(iE2,I,face_dofs);
for (int jF = 0; jF < face_dofs; jF++)
{
const int jE1 = d_indices1[f*face_dofs+jF];
const int jE2 = d_indices2[f*face_dofs+jF];
J[offset2+jF] = jE1;
J[offset1+jF] = jE2;
Data[offset2+jF] = mat_fea(jF,iF,0,f);
Data[offset1+jF] = mat_fea(jF,iF,1,f);
}
});
}
void L2FaceRestriction::AddFaceMatricesToElementMatrices(Vector &fea_data,
Vector &ea_data) const
{
const int face_dofs = dof;
const int elem_dofs = elemDofs;
const int NE = ne;
if (m==L2FaceValues::DoubleValued)
{
auto d_indices1 = scatter_indices1.Read();
auto d_indices2 = scatter_indices2.Read();
auto mat_fea = Reshape(fea_data.Read(), face_dofs, face_dofs, 2, nf);
auto mat_ea = Reshape(ea_data.ReadWrite(), elem_dofs, elem_dofs, ne);
MFEM_FORALL(f, nf,
{
const int e1 = d_indices1[f*face_dofs]/elem_dofs;
const int e2 = d_indices2[f*face_dofs]/elem_dofs;
for (int j = 0; j < face_dofs; j++)
{
const int jB1 = d_indices1[f*face_dofs+j]%elem_dofs;
for (int i = 0; i < face_dofs; i++)
{
const int iB1 = d_indices1[f*face_dofs+i]%elem_dofs;
AtomicAdd(mat_ea(iB1,jB1,e1), mat_fea(i,j,0,f));
}
}
if (e2 < NE)
{
for (int j = 0; j < face_dofs; j++)
{
const int jB2 = d_indices2[f*face_dofs+j]%elem_dofs;
for (int i = 0; i < face_dofs; i++)
{
const int iB2 = d_indices2[f*face_dofs+i]%elem_dofs;
AtomicAdd(mat_ea(iB2,jB2,e2), mat_fea(i,j,1,f));
}
}
}
});
}
else
{
auto d_indices = scatter_indices1.Read();
auto mat_fea = Reshape(fea_data.Read(), face_dofs, face_dofs, nf);
auto mat_ea = Reshape(ea_data.ReadWrite(), elem_dofs, elem_dofs, ne);
MFEM_FORALL(f, nf,
{
const int e = d_indices[f*face_dofs]/elem_dofs;
for (int j = 0; j < face_dofs; j++)
{
const int jE = d_indices[f*face_dofs+j]%elem_dofs;
for (int i = 0; i < face_dofs; i++)
{
const int iE = d_indices[f*face_dofs+i]%elem_dofs;
AtomicAdd(mat_ea(iE,jE,e), mat_fea(i,j,f));
}
}
});
}
}
int ToLexOrdering(const int dim, const int face_id, const int size1d,
const int index)
{
switch (dim)
{
case 1:
return 0;
case 2:
return ToLexOrdering2D(face_id, size1d, index);
case 3:
return ToLexOrdering3D(face_id, size1d, index%size1d, index/size1d);
default:
mfem_error("Unsupported dimension.");
return 0;
}
}
} // namespace mfem