Fix various includes.

src/mlpack/core/data/data.hpp

@@ -26,6 +26,7 @@
 #include "confusion_matrix.hpp"
 #include "dataset_mapper.hpp"
 #include "image_info.hpp"
+#include "imputer.hpp"
 #include "is_naninf.hpp"
 #include "normalize_labels.hpp"
 #include "one_hot_encoding.hpp"

src/mlpack/core/tree/tree.hpp

@@ -10,6 +10,7 @@
 #include "bounds.hpp"
 
 #include "binary_space_tree.hpp"
+#include "cosine_tree/cosine_tree.hpp"
 #include "cover_tree.hpp"
 #include "example_tree.hpp"
 #include "octree.hpp"

src/mlpack/methods/bias_svd/bias_svd.hpp

@@ -14,9 +14,8 @@
 #ifndef MLPACK_METHODS_BIAS_SVD_BIAS_SVD_HPP
 #define MLPACK_METHODS_BIAS_SVD_BIAS_SVD_HPP
 
-#include <mlpack/prereqs.hpp>
+#include <mlpack/core.hpp>
 #include <ensmallen.hpp>
-#include <mlpack/methods/cf/cf.hpp>
 
 #include "bias_svd_function.hpp"
 

src/mlpack/methods/decision_tree/decision_tree.hpp

@@ -27,6 +27,7 @@
 
 #include "all_dimension_select.hpp"
 #include "random_dimension_select.hpp"
+#include "multiple_random_dimension_select.hpp"
 
 #include <type_traits>
 

src/mlpack/methods/kmeans/kmeans.hpp

@@ -17,7 +17,6 @@
 // Include initialization strategies.
 #include "sample_initialization.hpp"
 #include "kmeans_plus_plus_initialization.hpp"
-#include "refined_start.hpp"
 #include "random_partition.hpp"
 
 // Include empty cluster policies.
@@ -208,4 +207,8 @@ class KMeans
 // Include implementation.
 #include "kmeans_impl.hpp"
 
+// The refined start initialization strategy uses KMeans, so it must be included
+// afterwards.
+#include "refined_start.hpp"
+
 #endif // MLPACK_METHODS_KMEANS_KMEANS_HPP

src/mlpack/methods/regularized_svd/regularized_svd.hpp

@@ -15,7 +15,6 @@
 
 #include <mlpack/prereqs.hpp>
 #include <ensmallen.hpp>
-#include <mlpack/methods/cf/cf.hpp>
 
 #include "regularized_svd_function.hpp"
 

src/mlpack/methods/svdplusplus/svdplusplus.hpp

@@ -15,7 +15,6 @@
 #define MLPACK_METHODS_SVDPLUSPLUS_SVDPLUSPLUS_HPP
 
 #include <mlpack/core.hpp>
-#include <mlpack/methods/cf/cf.hpp>
 
 #include <ensmallen.hpp>
 

src/mlpack/tests/callback_test.cpp

@@ -12,6 +12,11 @@
 #include <ensmallen_bits/callbacks/callbacks.hpp>
 #include <mlpack/core.hpp>
 #include <mlpack/methods/ann/ann.hpp>
+#include <mlpack/methods/lmnn/lmnn.hpp>
+#include <mlpack/methods/logistic_regression/logistic_regression.hpp>
+#include <mlpack/methods/nca/nca.hpp>
+#include <mlpack/methods/softmax_regression/softmax_regression.hpp>
+#include <mlpack/methods/sparse_autoencoder/sparse_autoencoder.hpp>
 
 #include "catch.hpp"
 

src/mlpack/tests/cv_test.cpp

@@ -11,7 +11,7 @@
 
 #include <type_traits>
 
-#include <mlpack/core/core.hpp>
+#include <mlpack/core.hpp>
 #include <mlpack/methods/ann/ann.hpp>
 #include <mlpack/methods/decision_tree/decision_tree.hpp>
 #include <mlpack/methods/hoeffding_trees/hoeffding_trees.hpp>

src/mlpack/tests/krann_search_test.cpp

@@ -12,6 +12,7 @@
 #include <time.h>
 #include <mlpack/core.hpp>
 #include <mlpack/methods/rann/rann.hpp>
+#include <mlpack/methods/rann/ra_model.hpp>
 
 #include "catch.hpp"
 

src/mlpack/tests/ub_tree_test.cpp

@@ -10,6 +10,7 @@
  * http://www.opensource.org/licenses/BSD-3-Clause for more information.
  */
 #include <mlpack/core.hpp>
+#include <mlpack/methods/neighbor_search/neighbor_search.hpp>
 
 #include "catch.hpp"
 

src/mlpack/tests/vantage_point_tree_test.cpp

@@ -9,6 +9,7 @@
  * http://www.opensource.org/licenses/BSD-3-Clause for more information.
  */
 #include <mlpack/core.hpp>
+#include <mlpack/methods/neighbor_search/neighbor_search.hpp>
 
 #include "catch.hpp"
 #include "test_catch_tools.hpp"