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Author SHA1 Message Date
Ryan Curtin d2e353468b Merge pull request #626 from ajjl/removeTrailingWhitespace 
Removes trailing whitespaces at end of lines
 2016-04-19 19:05:02 -04:00
Ryan Curtin c334b992da Merge pull request #627 from darcyliu/bugfix 
Remove non-existent man page targets
 2016-04-19 19:03:24 -04:00
Ryan Curtin 64c049efa2 Rename AllkFN to KFN, and AllkNN to KNN. 2016-04-19 16:00:38 -07:00
Darcy Liu 0e583d2543 Remove non-existent man page targets 
Since mlpack_allkfn/mlpack_allknn have been renamed, no man pages will
be generated for them.
 2016-04-19 21:23:32 +01:00
Alexander Leinoff efb64f2c7d Removes trailing whitespaces at end of lines 
Unnecessary end of line whitespace is generally frowned upon. In addition some
editors remove end of line whitespace automatically, making diffs hard to read.
This commit removes all trailing witespaces. Using some sed magic in bash:

find . -name "*.*" -type f -print0 | xargs gsed -i 's/[ \t]*$//'
 2016-04-19 12:10:01 -05:00
Ryan Curtin 6be725a3fa Update documentation for changed names. 2016-04-18 13:08:14 -07:00
Ryan Curtin 1d7ea164bb Deprecate old names; add new names. 2016-04-18 13:08:08 -07:00
Ryan Curtin 56b53a09e2 Remove unnecessary comments from tests. 2016-04-18 10:46:46 -07:00
Ryan Curtin 7e0e6ea1e3 My editor auto-removed trailing spaces. 2016-04-18 10:44:46 -07:00
Ryan Curtin a6f20af309 Update comment for accuracy; I should have been more specific when I wrote it. 2016-04-18 10:44:28 -07:00
Ryan Curtin 8a249cf02c Rename main program files. 
This is done for add_cli_executable().
 2016-04-18 10:42:29 -07:00
Ryan Curtin ee3c27a47f Merge pull request #625 from xantares/fix_cli_opt 
Fix configuration when BUILD_CLI_EXECUTABLES=OFF
 2016-04-18 13:27:09 -04:00
Michel Zou c5aa37097c Fix configuration when BUILD_CLI_EXECUTABLES=OFF 2016-04-18 19:23:37 +02:00
Ryan Curtin 28ae007678 Merge branch 'xantares-cli_option' 2016-04-18 09:00:44 -07:00
Ryan Curtin 2564cf4c51 Update documentation. 2016-04-18 09:00:19 -07:00
Ryan Curtin d6c4a52951 Remove extra newlines. 2016-04-18 08:58:14 -07:00
Ryan Curtin 3991cc2c27 Merge branch 'cli_option' of https://github.com/xantares/mlpack into xantares-cli_option 2016-04-18 08:55:07 -07:00
Ryan Curtin cf2b625650 Remove debugging output. 2016-04-18 07:19:02 -07:00
Ryan Curtin 3d651399be Update HISTORY to note mlpack_allknn and mlpack_allkfn change. 2016-04-18 07:18:01 -07:00
Ryan Curtin 0e6f3512e5 Merge pull request #618 from darcyliu/rename 
Rename mlpack_allknn/mlpack_allkfn to mlpack_knn/mlpack_kfn
 2016-04-18 10:17:00 -04:00
Ryan Curtin c5573b26c0 Merge pull request #621 from xantares/fix-dt_utils-cast 
Fix a cast in dt_utils.cpp
 2016-04-16 11:04:50 -04:00
Michel Zou c6eb4d757f Fix a cast in dt_utils.cpp 2016-04-16 14:26:00 +02:00
xantares 9cd5bec89c Add an option to disable CLI executables 
the cmake option BUILD_CLI_EXECUTABLES is added
 2016-04-16 14:16:38 +02:00
Darcy Liu 5702b9fe4c Copy mlpack_knn/mlpack_kfn after they have been built 2016-04-16 03:09:01 +01:00
Darcy Liu 2f9ad40493 Make mlpack_allknn by copy 2016-04-16 02:38:39 +01:00
Ryan Curtin 31dd6c033f Document new CMake options. 2016-04-15 14:12:28 -04:00
Ryan Curtin 698248845c Merge pull request #616 from xantares/testing 
Testing
 2016-04-15 14:10:56 -04:00
Darcy Liu f13409cf7f Rename mlpack_allknn/mlpack_allkfn to mlpack_knn/mlpack_kfn 
Make a copy of mlpack_knn/mlpack_kfn both on Windows and *unix.
Update documentation which references 'allknn' or 'allkfn').
 2016-04-15 14:16:20 +01:00
Ryan Curtin 0c945f3d36 Manually calculate starting state probability. 2016-04-15 08:58:17 -04:00
Michel Zou 06c34f7c2f Add an option to disable tests 2016-04-15 12:03:39 +00:00
Michel Zou 4fa02a0e81 Run mlapack_test through ctest 
The 'test' target is reserved to ctest and we avoid this cmake warning:
CMake Warning (dev) at src/mlpack/CMakeLists.txt:87 (add_custom_target):
  Policy CMP0037 is not set: Target names should not be reserved and should
  match a validity pattern.  Run "cmake --help-policy CMP0037" for policy
  details.  Use the cmake_policy command to set the policy and suppress this
  warning.

  The target name "test" is reserved or not valid for certain CMake features,
  such as generator expressions, and may result in undefined behavior.
This warning is for project developers.  Use -Wno-dev to suppress it.

Using ctest over a custom target has also the advantage of allowing to use an
interpreter when cross-compiling.
Now this looks like this:

$ make test
Running tests...
Test project /home/xantares/projects/mlpack/build
    Start 1: mlpack_test
1/1 Test #1: mlpack_test ......................   Passed  529.50 sec

100% tests passed, 0 tests failed out of 1

Total Test time (real) = 529.53 sec

Ctest can also be used directly with a timeout:
```ctest --output-on-failure --timeout 1800```
instead of
```travis_wait 30 ./bin/mlpack_test -p```
 2016-04-15 12:03:39 +00:00
Marcus Edel 2e33c5c42c Switching back to release mode; also remove the bigobj flag since it should be added to the CMake file. 2016-04-15 00:09:03 +02:00
Marcus Edel 6de06f0f70 Add msbuild /bigobj flag to the appveyor config to avoid 'object file format limit' error. 2016-04-14 23:54:42 +02:00
Marcus Edel e047bcfece We have to tell msbuild to compile in debugging mode also use the custom appveyor logger to push MSBuild warning and errors in real-time to build console. Let's see if that makes things faster. 2016-04-14 23:08:07 +02:00
Ryan Curtin 62a9489500 Compile in debugging mode, in the hopes that things will be faster. 
If the compiler is not optimizing, then maybe it will be quicker...
 2016-04-14 15:10:04 -04:00
Ryan Curtin b8f53a4eeb Update documentation. 2016-04-14 14:52:41 -04:00
Ryan Curtin 24f7626bf8 Update HISTORY to note changed version identifiers. 2016-04-14 14:52:05 -04:00
Ryan Curtin 637809fec8 Merge branch 'master' of https://github.com/mlpack/mlpack 2016-04-14 14:47:25 -04:00
Ryan Curtin 3781ccbe93 Fix unusual bug that pruned too tightly. 
It is possible, in very weird and occasional situations (in this case, by using
mlpack_allkfn with phy.csv and cover trees), that a point in a candidate
reference node would have the exact same distance as the bound distance.  But in
this case the reference node should not be pruned, since that point in the
candidate reference node can still update the results!  That could happen if,
for instance, the results array for a particular point isn't completely full
yet.
 2016-04-14 14:45:37 -04:00
Ryan Curtin e0e9d0463e Update version macros to retain underscore versions. 2016-04-14 14:40:28 -04:00
Ryan Curtin c9c17127f9 Merge branch 'master' of https://github.com/Falit/mlpack into Falit-master 2016-04-14 11:31:51 -04:00
Ryan Curtin 08ffa1b0c6 Fix name of tutorial. 2016-04-14 10:11:39 -04:00
Ryan Curtin 1140d93866 Fix missing \endcode. 2016-04-14 10:11:39 -04:00
Ryan Curtin 8ca7cf2796 Fix doxygen issue. 2016-04-14 10:11:39 -04:00
Ryan Curtin 15b5e65fe6 Add recent tutorials. 2016-04-14 10:11:39 -04:00
Ryan Curtin 79bf33090e Update documentation. 2016-04-14 10:11:39 -04:00
Ryan Curtin f73d89833d Merge pull request #615 from xantares/patch-1 
MinGW: use lowercase windows.h
 2016-04-14 09:40:34 -04:00
xantares f3db4278c7 MinGW: use lowercase windows.h 
Fixes the build for MinGW-w64 as it uses lowercase headers, unchanged for case-insensitive native windows platforms.
 2016-04-14 07:38:42 +02:00
Marcus Edel 77532c84c6 Merge pull request #614 from stereomatchingkiss/refine_log_softmax 
Only initialize variable once.
 2016-04-13 21:21:37 +02:00
Ryan Curtin e0e7ba5353 Handle case when dataSeq.size() == 1. 
Thanks warpuv for pointing this out!
 2016-04-13 10:52:19 -04:00