* Commit initial tested documentation of spill tree. * Document all four variants of spill trees. * Correct documentation: a rho of 0.5 will result in no overlapping. * Add new trees to sidebar. * Don't upgrade pip since it is installed by Homebrew on OS X.
126 lines
5.1 KiB
YAML
126 lines
5.1 KiB
YAML
# This action sets up any language-specific environment for any of mlpack's
|
|
# bindings.
|
|
name: "Set up binding environments"
|
|
description: "Install build and runtime dependencies for mlpack's bindings to other languages."
|
|
inputs:
|
|
lang:
|
|
required: true
|
|
description: "The language to set up bindings for."
|
|
|
|
runs:
|
|
using: "composite"
|
|
steps:
|
|
#
|
|
# Python bindings.
|
|
#
|
|
- name: "Set up Python (Linux)"
|
|
if: inputs.lang == 'Python' && runner.os == 'Linux'
|
|
shell: bash
|
|
run: |
|
|
python3 -m pip install --upgrade pip
|
|
python3 -m pip install --upgrade --ignore-installed setuptools cython \
|
|
pandas wheel pytest
|
|
echo "CMAKE_BINDING_ARGS=-DPYTHON_EXECUTABLE=`which python3`" >> $GITHUB_ENV
|
|
|
|
- name: "Set up Python (macOS)"
|
|
if: inputs.lang == 'Python' && runner.os == 'macOS'
|
|
shell: bash
|
|
run: |
|
|
/opt/homebrew/bin/python3 -m pip install --break-system-packages setuptools cython pandas zipp configparser wheel pytest
|
|
echo "CMAKE_BINDING_ARGS=-DPYTHON_EXECUTABLE=/opt/homebrew/bin/python3" >> $GITHUB_ENV
|
|
|
|
#
|
|
# Julia bindings.
|
|
#
|
|
- name: "Set up Julia on Linux"
|
|
if: inputs.lang == 'Julia' && runner.os == 'Linux'
|
|
shell: bash
|
|
run: |
|
|
wget https://julialang-s3.julialang.org/bin/linux/x64/1.10/julia-1.10.4-linux-x86_64.tar.gz
|
|
sudo tar -C /opt/ -xvpf julia-1.10.4-linux-x86_64.tar.gz
|
|
echo "CMAKE_BINDING_ARGS=-DJULIA_EXECUTABLE=/opt/julia-1.10.4/bin/julia" >> $GITHUB_ENV
|
|
echo "JULIA_EXECUTABLE=/opt/julia-1.10.4/bin/julia" >> $GITHUB_ENV
|
|
|
|
- name: "Set up Julia on macOS"
|
|
if: inputs.lang == 'Julia' && runner.os == 'macOS'
|
|
shell: bash
|
|
run: |
|
|
brew install --cask julia
|
|
echo "CMAKE_BINDING_ARGS=-DJULIA_EXECUTABLE=/opt/homebrew/bin/julia" >> $GITHUB_ENV
|
|
echo "JULIA_EXECUTABLE=/opt/homebrew/bin/julia" >> $GITHUB_ENV
|
|
|
|
#
|
|
# R bindings.
|
|
#
|
|
- name: Extract mlpack version for R bindings
|
|
if: inputs.lang == 'R'
|
|
shell: bash
|
|
run: |
|
|
MLPACK_VERSION_MAJOR=$(grep -i ".*#define MLPACK_VERSION_MAJOR.*" src/mlpack/core/util/version.hpp | grep -o "[0-9]*")
|
|
MLPACK_VERSION_MINOR=$(grep -i ".*#define MLPACK_VERSION_MINOR.*" src/mlpack/core/util/version.hpp | grep -o "[0-9]*")
|
|
MLPACK_VERSION_PATCH=$(grep -i ".*#define MLPACK_VERSION_PATCH.*" src/mlpack/core/util/version.hpp | grep -o "[0-9]*")
|
|
MLPACK_VERSION_VALUE=${MLPACK_VERSION_MAJOR}.${MLPACK_VERSION_MINOR}.${MLPACK_VERSION_PATCH}
|
|
echo "MLPACK_R_PACKAGE=$(echo mlpack_"$MLPACK_VERSION_VALUE".tar.gz)" >> $GITHUB_ENV
|
|
|
|
- name: "Setup pandoc for R"
|
|
if: inputs.lang == 'R'
|
|
uses: r-lib/actions/setup-pandoc@v2
|
|
|
|
# Setup r2u (linux)
|
|
- name: Setup r2u
|
|
if: inputs.lang == 'R' && runner.os == 'Linux'
|
|
uses: eddelbuettel/github-actions/r2u-setup@master
|
|
|
|
- name: Setup p3m.dev (macOS / Windows)
|
|
uses: r-lib/actions/setup-r@v2
|
|
if: inputs.lang == 'R' && (runner.os == 'Windows' || runner.os == 'macOS')
|
|
with:
|
|
r-version: "release"
|
|
use-public-rspm: true
|
|
|
|
- name: "Configure ccache for R"
|
|
if: inputs.lang == 'R'
|
|
shell: bash
|
|
run: |
|
|
ccache --set-config "sloppiness=include_file_ctime"
|
|
ccache --set-config "hash_dir=false"
|
|
ccache --zero-stats
|
|
|
|
- name: "Query R dependencies"
|
|
if: inputs.lang == 'R'
|
|
shell: bash
|
|
run: |
|
|
cp src/mlpack/bindings/R/mlpack/DESCRIPTION.in DESCRIPTION
|
|
Rscript -e 'install.packages(c("remotes", "roxygen2", "pkgbuild"))'
|
|
Rscript -e 'remotes::install_deps(".", dependencies=TRUE)'
|
|
|
|
- name: Install cereal manually for R
|
|
if: inputs.lang == 'R'
|
|
shell: bash
|
|
run: |
|
|
# We don't install cereal via apt, because the Debian packagers
|
|
# split the rapidjson dependency into a separate package. We will
|
|
# bundle the cereal sources with the R package, so we want them to
|
|
# be exactly the upstream sources (with rapidjson included).
|
|
wget https://github.com/USCiLab/cereal/archive/refs/tags/v1.3.2.tar.gz
|
|
tar -xvzpf v1.3.2.tar.gz
|
|
#
|
|
# These directives cause warnings on CRAN:
|
|
# https://github.com/USCiLab/cereal/blob/master/include/cereal/external/base64.hpp#L28-L31
|
|
# The command below comments them out.
|
|
sed 's|#pragma|// #pragma|' cereal-1.3.2/include/cereal/external/base64.hpp > cereal-1.3.2/include/cereal/external/base64.hpp.tmp
|
|
mv cereal-1.3.2/include/cereal/external/base64.hpp.tmp cereal-1.3.2/include/cereal/external/base64.hpp
|
|
#
|
|
# Fix cereal compilation on clang 19+; see
|
|
# https://github.com/USCiLab/cereal/pull/835
|
|
sed 's|::template apply|::apply|' cereal-1.3.2/include/cereal/types/tuple.hpp > cereal-1.3.2/include/cereal/types/tuple.hpp.tmp
|
|
mv cereal-1.3.2/include/cereal/types/tuple.hpp.tmp cereal-1.3.2/include/cereal/types/tuple.hpp
|
|
|
|
#
|
|
# Go bindings.
|
|
#
|
|
- name: "Set up Go on macOS"
|
|
if: inputs.lang == 'Go' && runner.os == 'macOS'
|
|
shell: bash
|
|
run: brew install go
|