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+14
@@ -15,6 +15,9 @@
|
||||
CMakeCache.txt
|
||||
CMakeFiles/
|
||||
|
||||
# Clangd server cache
|
||||
*.cache*
|
||||
|
||||
# Backup files
|
||||
*~
|
||||
|
||||
@@ -272,16 +275,27 @@ miniapps/navier/*_output
|
||||
|
||||
miniapps/nurbs/nurbs_ex1
|
||||
miniapps/nurbs/nurbs_ex1p
|
||||
miniapps/nurbs/nurbs_ex3
|
||||
miniapps/nurbs/nurbs_ex5
|
||||
miniapps/nurbs/nurbs_ex11p
|
||||
miniapps/nurbs/nurbs_ex24
|
||||
miniapps/nurbs/nurbs_solenoidal
|
||||
miniapps/nurbs/nurbs_printfunc
|
||||
miniapps/nurbs/nurbs_patch_ex1
|
||||
miniapps/nurbs/nurbs_curveint
|
||||
miniapps/nurbs/refined.mesh
|
||||
miniapps/nurbs/mesh.*
|
||||
miniapps/nurbs/sol_?.gf
|
||||
miniapps/nurbs/sol.*
|
||||
miniapps/nurbs/mode_*
|
||||
miniapps/nurbs/Example1*
|
||||
miniapps/nurbs/Example3*
|
||||
miniapps/nurbs/Example5*
|
||||
miniapps/nurbs/Solenoidal*
|
||||
miniapps/nurbs/ParaView
|
||||
miniapps/nurbs/sin-fit.mesh
|
||||
miniapps/nurbs/ex5.mesh
|
||||
miniapps/nurbs/exsol.mesh
|
||||
miniapps/nurbs/CurveInt
|
||||
miniapps/nurbs/nurbs_naca_cmesh
|
||||
miniapps/nurbs/naca-cmesh.mesh
|
||||
|
||||
@@ -11,6 +11,23 @@
|
||||
Version 4.7.1 (development)
|
||||
===========================
|
||||
|
||||
- Refactored the `ARKStepSolver` class (ARKODE interface) to use
|
||||
`TimeDependentOperator::Mult` only when the associated ODE operator is
|
||||
expressed in explicit form (i.e., `TimeDependentOperator::isExplicit()`),
|
||||
otherwise `TimeDependentOperator::ExplicitMult` is used. A check has been
|
||||
added to `ARKStepSolver` to verify that the associated ODE operator is not in
|
||||
explicit form when a mass matrix solver is enabled via a call to either the
|
||||
`UseMFEMMassLinearSolver` or `UseSundialsMassLinearSolver` methods. This is
|
||||
because enabling a mass matrix solver assumes that F(u,k,t) = M k in the
|
||||
associated ODE operator.
|
||||
|
||||
- Added support for custom interpolation procedure in FindPointsGSLIB.
|
||||
|
||||
- Added NURBS-based H(div) and H(curl) elements in 2D and 3D. Only on single
|
||||
patch meshes. Only implemented for serial computations.
|
||||
|
||||
- Added miniapps to demonstrate the H(div) and H(curl) NURBS elements.
|
||||
|
||||
- Added an MFEM example for the eikonal equation. This new solver is based on
|
||||
the proximal Galerkin method introduced by Keith and Surowiec.
|
||||
|
||||
@@ -40,6 +57,9 @@ Meshing improvements
|
||||
|
||||
- Added support for internal boundary elements in nonconforming meshes.
|
||||
|
||||
- Added ExodusII output capability. The writer can handle first-order (Pyramid5,
|
||||
Wedge6, Hex8, Tet4) and second-order FE types (Pyramid14, Wedge18, Hex27, Tet10).
|
||||
|
||||
- The ReadCubit Genesis mesh importer has been rewritten to improve readability.
|
||||
|
||||
Discretization improvements
|
||||
|
||||
+83
-13
@@ -32,7 +32,7 @@ groups_serial=(
|
||||
'"examples"
|
||||
"Examples:"
|
||||
"examples"
|
||||
"ex{,1,2,3}[0-9].cpp"'
|
||||
"ex{,[1-9]}[0-9].cpp"'
|
||||
# "ex1.cpp"'
|
||||
'"sundials"
|
||||
"SUNDIALS examples:"
|
||||
@@ -58,6 +58,10 @@ groups_serial=(
|
||||
"HiOp examples:"
|
||||
"examples/hiop"
|
||||
"ex9.cpp"'
|
||||
'"moonolith"
|
||||
"Moonolith examples:"
|
||||
"examples/moonolith"
|
||||
"ex1.cpp"'
|
||||
'"pumi"
|
||||
"PUMI examples:"
|
||||
"examples/pumi"
|
||||
@@ -66,25 +70,38 @@ groups_serial=(
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp mesh-quality.cpp
|
||||
polar-nc.cpp reflector.cpp shaper.cpp trimmer.cpp twist.cpp
|
||||
mesh-optimizer.cpp minimal-surface.cpp"'
|
||||
'"adjoint"
|
||||
"Adjoint miniapps:"
|
||||
"miniapps/adjoint"
|
||||
"cvsRoberts_ASAi_dns.cpp"'
|
||||
'"autodiff"
|
||||
"Autodiff miniapps:"
|
||||
"miniapps/autodiff"
|
||||
"seq_example.cpp seq_test.cpp"' # 'seq_test.cpp' has no sample runs
|
||||
'"dpg"
|
||||
"DPG miniapps:"
|
||||
"miniapps/dpg"
|
||||
"{acoustics,convection-diffusion,diffusion,maxwell}.cpp"'
|
||||
'"gslib"
|
||||
"GSLIB miniapps:"
|
||||
"miniapps/gslib"
|
||||
"field-diff.cpp field-interp.cpp findpts.cpp schwarz_ex1.cpp "'
|
||||
# todo: miniapps/mtop
|
||||
'"nurbs"
|
||||
"NURBS miniapps:"
|
||||
"miniapps/nurbs"
|
||||
"nurbs_ex1.cpp"'
|
||||
# todo: add other nurbs miniapps
|
||||
# todo: miniapps/solvers (serial)
|
||||
'"tools"
|
||||
"Tools miniapps:"
|
||||
"miniapps/tools"
|
||||
"convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp
|
||||
lor-transfer.cpp"'
|
||||
# todo: add other tools miniapps
|
||||
'"toys"
|
||||
"Toys miniapps:"
|
||||
"miniapps/toys"
|
||||
@@ -100,7 +117,7 @@ groups_parallel=(
|
||||
'"examples"
|
||||
"Examples:"
|
||||
"examples"
|
||||
"ex{,1,2,3}[0-9]p.cpp"'
|
||||
"ex{,[1-9]}[0-9]p.cpp"'
|
||||
# "ex1p.cpp"'
|
||||
'"sundials"
|
||||
"SUNDIALS examples:"
|
||||
@@ -126,6 +143,10 @@ groups_parallel=(
|
||||
"HiOp examples:"
|
||||
"examples/hiop"
|
||||
"ex9p.cpp"'
|
||||
'"moonolith"
|
||||
"Moonolith examples:"
|
||||
"examples/moonolith"
|
||||
"ex{1,2}p.cpp"'
|
||||
'"pumi"
|
||||
"PUMI examples:"
|
||||
"examples/pumi"
|
||||
@@ -138,24 +159,41 @@ groups_parallel=(
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp"'
|
||||
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp
|
||||
fit-node-position.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
"joule.cpp"'
|
||||
# "{volta,tesla,joule}.cpp"' # todo: multiline sample runs
|
||||
# "{joule,maxwell,tesla,volta}.cpp"' # todo: multiline sample runs
|
||||
'"adjoint"
|
||||
"Adjoint miniapps:"
|
||||
"miniapps/adjoint"
|
||||
"adjoint_advection_diffusion.cpp"'
|
||||
'"autodiff"
|
||||
"Autodiff miniapps:"
|
||||
"miniapps/autodiff"
|
||||
"par_example.cpp"'
|
||||
'"dpg"
|
||||
"DPG miniapps:"
|
||||
"miniapps/dpg"
|
||||
"p{acoustics,convection-diffusion,diffusion,maxwell}.cpp"'
|
||||
'"gslib"
|
||||
"GSLIB miniapps:"
|
||||
"miniapps/gslib"
|
||||
"pfindpts.cpp schwarz_ex1p.cpp"'
|
||||
'"hdiv-linear-solver"
|
||||
"H(div) linear solver miniapps:"
|
||||
"miniapps/hdiv-linear-solver"
|
||||
"grad_div.cpp darcy.cpp"'
|
||||
# 'miniapps/hooke/hooke.cpp' has no sample runs
|
||||
# todo: miniapps/mtop
|
||||
# todo: miniapps/multidomain
|
||||
'"navier"
|
||||
"Navier miniapps:"
|
||||
"miniapps/navier"
|
||||
"navier_cht.cpp"'
|
||||
# todo: add other navier miniapps
|
||||
'"nurbs"
|
||||
"NURBS miniapps:"
|
||||
"miniapps/nurbs"
|
||||
@@ -164,14 +202,18 @@ groups_parallel=(
|
||||
"Shifted miniapps:"
|
||||
"miniapps/shifted"
|
||||
"distance.cpp"'
|
||||
# todo: add other shifted miniapps
|
||||
'"solvers"
|
||||
"Solvers miniapps:"
|
||||
"miniapps/solvers"
|
||||
"block-solvers.cpp"'
|
||||
# todo: add other solvers miniapps
|
||||
# todo: miniapps/spde
|
||||
'"tools"
|
||||
"Tools miniapps:"
|
||||
"miniapps/tools"
|
||||
"convert-cd.cpp get-values.cpp load-dc.cpp"'
|
||||
"convert-dc.cpp get-values.cpp load-dc.cpp"'
|
||||
# todo: add other tools miniapps
|
||||
'"convergence"
|
||||
"Convergence tests:"
|
||||
"tests/convergence"
|
||||
@@ -186,7 +228,7 @@ groups_all=(
|
||||
'"examples"
|
||||
"Examples:"
|
||||
"examples"
|
||||
"ex\"{,1,2,3}[0-9]\"{,p}.cpp"'
|
||||
"ex\"{,[1-9]}[0-9]\"{,p}.cpp"'
|
||||
'"sundials"
|
||||
"SUNDIALS examples:"
|
||||
"examples/sundials"
|
||||
@@ -215,10 +257,14 @@ groups_all=(
|
||||
"HiOp examples:"
|
||||
"examples/hiop"
|
||||
"ex9.cpp ex9p.cpp"'
|
||||
'"moonolith"
|
||||
"Moonolith examples:"
|
||||
"examples/moonolith"
|
||||
"ex1.cpp ex{1,2}p.cpp"'
|
||||
'"pumi"
|
||||
"PUMI examples:"
|
||||
"examples/pumi"
|
||||
"ex1.cpp ex1p.cpp ex2.cpp ex6p.cpp"'
|
||||
"ex1.cpp ex2.cpp ex1p.cpp ex6p.cpp"'
|
||||
'"superlu"
|
||||
"Superlu examples:"
|
||||
"examples/superlu"
|
||||
@@ -226,43 +272,67 @@ groups_all=(
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
|
||||
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp"'
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp mesh-quality.cpp
|
||||
polar-nc.cpp reflector.cpp shaper.cpp trimmer.cpp twist.cpp
|
||||
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp
|
||||
fit-node-position.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
"joule.cpp"'
|
||||
# "{volta,tesla,joule}.cpp"' # todo: multiline sample runs
|
||||
# "{joule,maxwell,tesla,volta}.cpp"' # todo: multiline sample runs
|
||||
'"adjoint"
|
||||
"Adjoint miniapps:"
|
||||
"miniapps/adjoint"
|
||||
"adjoint_advection_diffusion.cpp cvsRoberts_ASAi_dns.cpp"'
|
||||
"cvsRoberts_ASAi_dns.cpp adjoint_advection_diffusion.cpp"'
|
||||
'"autodiff"
|
||||
"Autodiff miniapps:"
|
||||
"miniapps/autodiff"
|
||||
"seq_example.cpp seq_test.cpp par_example.cpp"'
|
||||
# 'seq_test.cpp' has no sample runs
|
||||
'"dpg"
|
||||
"DPG miniapps:"
|
||||
"miniapps/dpg"
|
||||
"{,p}{acoustics,convection-diffusion,diffusion,maxwell}.cpp"'
|
||||
'"gslib"
|
||||
"GSLIB miniapps:"
|
||||
"miniapps/gslib"
|
||||
"field-diff.cpp field-interp.cpp findpts.cpp schwarz_ex1.cpp pfindpts.cpp
|
||||
schwarz_ex1p.cpp"'
|
||||
'"hdiv-linear-solver"
|
||||
"H(div) linear solver miniapps:"
|
||||
"miniapps/hdiv-linear-solver"
|
||||
"grad_div.cpp darcy.cpp"'
|
||||
# 'miniapps/hooke/hooke.cpp' has no sample runs
|
||||
# todo: miniapps/mtop
|
||||
# todo: miniapps/multidomain
|
||||
'"navier"
|
||||
"Navier miniapps:"
|
||||
"miniapps/navier"
|
||||
"navier_cht.cpp"'
|
||||
# todo: add other navier miniapps
|
||||
'"nurbs"
|
||||
"NURBS miniapps:"
|
||||
"miniapps/nurbs"
|
||||
"nurbs_ex1.cpp nurbs_ex1p.cpp nurbs_ex11p.cpp"'
|
||||
# todo: add other nurbs miniapps
|
||||
'"shifted"
|
||||
"Shifted miniapps:"
|
||||
"miniapps/shifted"
|
||||
"distance.cpp"'
|
||||
# todo: add other shifted miniapps
|
||||
'"solvers"
|
||||
"Solvers miniapps:"
|
||||
"miniapps/solvers"
|
||||
"block-solvers.cpp"'
|
||||
# todo: add other solvers miniapps
|
||||
# todo: miniapps/spde
|
||||
'"tools"
|
||||
"Tools miniapps:"
|
||||
"miniapps/tools"
|
||||
"convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp
|
||||
lor-transfer.cpp"'
|
||||
# todo: add other tools miniapps
|
||||
'"toys"
|
||||
"Toys miniapps:"
|
||||
"miniapps/toys"
|
||||
@@ -386,7 +456,7 @@ function help_message()
|
||||
mfem_config [${mfem_config}]
|
||||
Set MFEM configuration options
|
||||
make [${make}], mpiexec [${mpiexec}], mpiexec_np [${mpiexec_np}]
|
||||
Their values can also set using the respective uppercase environment
|
||||
Their values can also be set using the respective uppercase environment
|
||||
variable
|
||||
mfem_build_dir [${mfem_build_dir}]
|
||||
Same as '-d': set this variable to something different from <mfem_dir>
|
||||
|
||||
@@ -18,9 +18,9 @@ elements
|
||||
boundary
|
||||
4
|
||||
1 1 0 1
|
||||
1 1 2 3
|
||||
1 1 3 0
|
||||
1 1 1 2
|
||||
2 1 2 3
|
||||
3 1 3 0
|
||||
4 1 1 2
|
||||
|
||||
edges
|
||||
4
|
||||
|
||||
@@ -1049,7 +1049,8 @@ RECURSIVE = NO
|
||||
EXCLUDE = @MFEM_SOURCE_DIR@/config/_config.hpp \
|
||||
@MFEM_SOURCE_DIR@/config/get_hypre_version.cpp \
|
||||
@MFEM_SOURCE_DIR@/general/tinyxml2.h \
|
||||
@MFEM_SOURCE_DIR@/general/tinyxml2.cpp
|
||||
@MFEM_SOURCE_DIR@/general/tinyxml2.cpp \
|
||||
@MFEM_SOURCE_DIR@/linalg/lapack.hpp
|
||||
|
||||
# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
|
||||
# directories that are symbolic links (a Unix file system feature) are excluded
|
||||
|
||||
@@ -182,6 +182,21 @@ namespace mfem {
|
||||
* <a class="el" href="examples_2superlu_2ex1p_8cpp_source.html">1p</a>,
|
||||
* demonstrating the use of MFEM's \link superlu.hpp SuperLU integration\endlink.
|
||||
*
|
||||
* <H4>NURBS Examples</H4>
|
||||
* - Variants of Examples
|
||||
* <a class="el" href="nurbs__ex1_8cpp_source.html">1</a>,
|
||||
* <a class="el" href="nurbs__ex1p_8cpp_source.html">1p</a>,
|
||||
* <a class="el" href="nurbs__ex3_8cpp_source.html">3</a>,
|
||||
* <a class="el" href="nurbs__ex5_8cpp_source.html">5</a>,
|
||||
* <a class="el" href="nurbs__ex11p_8cpp_source.html">11p</a>, and
|
||||
* <a class="el" href="nurbs__ex24_8cpp_source.html">24</a>,
|
||||
* demonstrating howto perform NURBS-based Isogeometric Analysis.
|
||||
* - Variant of Example <a class="el" href="nurbs__patch__ex1_8cpp_source.html">1</a>: demonstrates the use of patch integration
|
||||
* - <a class="el" href="nurbs__solenoidal_8cpp_source.html">NURBS Divergence-free</a>: solve a solenoidal vector projection with NURBS-based H(div) elements
|
||||
* - <a class="el" href="nurbs__curveint_8cpp_source.html">NURBS Interpolation</a>: NURBS interpolation of given geometry
|
||||
* - <a class="el" href="nurbs__naca__cmesh_8cpp_source.html">NURBS NACA Mesher</a>: generate NURBS based mesh around a NACA foil
|
||||
* - <a class="el" href="nurbs__printfunc_8cpp_source.html">NURBS Printer</a>: print the NURBS-basis
|
||||
*
|
||||
* <H3>Miniapps</H3>
|
||||
* - <a class="el" href="volta_8cpp_source.html">Volta</a>: simple electrostatics simulation code
|
||||
* - <a class="el" href="tesla_8cpp_source.html">Tesla</a>: simple magnetostatics simulation code
|
||||
|
||||
@@ -96,6 +96,7 @@ public:
|
||||
{
|
||||
Vector w_glob(width);
|
||||
pfes.Dof_TrueDof_Matrix()->MultTranspose(w, w_glob);
|
||||
w_glob.HostReadWrite(); // read+write -> can use w_glob(i) (non-const)
|
||||
for (int i = 0; i < width; i++) { grad(0, i) = w_glob(i); }
|
||||
}
|
||||
|
||||
|
||||
@@ -31,11 +31,21 @@ include_directories(BEFORE ${PROJECT_BINARY_DIR})
|
||||
add_custom_target(test_sundials
|
||||
${CMAKE_CTEST_COMMAND} -R sundials USES_TERMINAL)
|
||||
|
||||
# Add one executable per cpp file, adding "sundials_" as prefix. Sets
|
||||
# "test_sundials" as a target that depends on the given examples.
|
||||
# Add one executable per cpp file, adding "sundials_" as prefix so the CMake
|
||||
# target is unique from those in the non-SUNDIALS examples. Also sets
|
||||
# "test_sundials" as a target that depends on the given SUNDIALS examples.
|
||||
set(PFX sundials_)
|
||||
add_mfem_examples(SUNDIALS_EXAMPLES_SRCS ${PFX} "" test_sundials)
|
||||
|
||||
# Remove "sundials_" prefix from exectuable name for consistency with GNU build
|
||||
# system.
|
||||
foreach(SRC_FILE ${SUNDIALS_EXAMPLES_SRCS})
|
||||
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
|
||||
string(REPLACE ".cpp" "" TARGET_NAME "${PFX}${SRC_FILENAME}")
|
||||
string(REPLACE ${PFX} "" EXE_NAME ${TARGET_NAME})
|
||||
set_target_properties(${TARGET_NAME} PROPERTIES OUTPUT_NAME ${EXE_NAME})
|
||||
endforeach()
|
||||
|
||||
# Testing.
|
||||
# The SUNDIALS tests can be run separately using the target "test_sundials"
|
||||
# which builds the examples and runs:
|
||||
@@ -51,7 +61,10 @@ if (MFEM_ENABLE_TESTING)
|
||||
set(EX10_COMMON_OPTS -m ../../data/beam-quad.mesh -o 2 -s 5 -dt 0.15 -tf 6 -vs 10)
|
||||
set(EX10_TEST_OPTS ${EX10_COMMON_OPTS} -r 2)
|
||||
set(EX10P_TEST_OPTS ${EX10_COMMON_OPTS} -rp 1)
|
||||
# Example 16: use the default options
|
||||
# Example 16: test ARKODE with implicit time stepping using mass form
|
||||
set(EX16_COMMON_OPTS -s 15)
|
||||
set(EX16_TEST_OPTS ${EX16_COMMON_OPTS})
|
||||
set(EX16P_TEST_OPTS ${EX16_COMMON_OPTS})
|
||||
|
||||
# Add the tests: one test per source file.
|
||||
foreach(SRC_FILE ${SUNDIALS_EXAMPLES_SRCS})
|
||||
|
||||
@@ -1,7 +1,9 @@
|
||||
// MFEM Example 10
|
||||
// SUNDIALS Modification
|
||||
//
|
||||
// Compile with: make ex10
|
||||
// Compile with:
|
||||
// make ex10 (GNU make)
|
||||
// make sundials_ex10 (CMake)
|
||||
//
|
||||
// Sample runs:
|
||||
// ex10 -m ../../data/beam-quad.mesh -r 2 -o 2 -s 12 -dt 0.15 -vs 10
|
||||
|
||||
@@ -1,7 +1,9 @@
|
||||
// MFEM Example 10 - Parallel Version
|
||||
// SUNDIALS Modification
|
||||
//
|
||||
// Compile with: make ex10p
|
||||
// Compile with:
|
||||
// make ex10p (GNU make)
|
||||
// make sundials_ex10p (CMake)
|
||||
//
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-quad.mesh -rp 1 -o 2 -s 12 -dt 0.15 -vs 10
|
||||
|
||||
+256
-163
@@ -1,15 +1,21 @@
|
||||
// MFEM Example 16
|
||||
// SUNDIALS Modification
|
||||
//
|
||||
// Compile with: make ex16
|
||||
// Compile with:
|
||||
// make ex16 (GNU make)
|
||||
// make sundials_ex16 (CMake)
|
||||
//
|
||||
// Sample runs: ex16
|
||||
// ex16 -m ../../data/inline-tri.mesh
|
||||
// ex16 -m ../../data/disc-nurbs.mesh -tf 2
|
||||
// ex16 -s 12 -a 0.0 -k 1.0
|
||||
// ex16 -s 15 -a 0.0 -k 1.0
|
||||
// ex16 -s 8 -a 1.0 -k 0.0 -dt 1e-4 -tf 5e-2 -vs 25
|
||||
// ex16 -s 11 -a 1.0 -k 0.0 -dt 1e-4 -tf 5e-2 -vs 25
|
||||
// ex16 -s 9 -a 0.5 -k 0.5 -o 4 -dt 1e-4 -tf 2e-2 -vs 25
|
||||
// ex16 -s 12 -a 0.5 -k 0.5 -o 4 -dt 1e-4 -tf 2e-2 -vs 25
|
||||
// ex16 -s 10 -dt 1.0e-4 -tf 4.0e-2 -vs 40
|
||||
// ex16 -s 13 -dt 1.0e-4 -tf 4.0e-2 -vs 40
|
||||
// ex16 -m ../../data/fichera-q2.mesh
|
||||
// ex16 -m ../../data/escher.mesh
|
||||
// ex16 -m ../../data/beam-tet.mesh -tf 10 -dt 0.1
|
||||
@@ -37,75 +43,102 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
/** After spatial discretization, the conduction model can be written as:
|
||||
/** After spatial discretization, the conduction model is expressed as
|
||||
*
|
||||
* du/dt = M^{-1}(-Ku)
|
||||
* M du/dt = - K(u) u
|
||||
*
|
||||
* where u is the vector representing the temperature, M is the mass matrix,
|
||||
* and K is the diffusion operator with diffusivity depending on u:
|
||||
* and K(u) is the diffusion operator with diffusivity depending on u:
|
||||
* (\kappa + \alpha u).
|
||||
*
|
||||
* Class ConductionOperator represents the right-hand side of the above ODE.
|
||||
* Class ConductionOperatorOperator represents the above ODE operator in the
|
||||
* general form F(u, k, t) = G(u, t) where
|
||||
*
|
||||
* 1. F(u, du/dt, t) = du/dt (ODE is expressed in EXPLICIT form)
|
||||
* G(u, t) = - inv(M) K(u) u
|
||||
* 2. F(u, du/dt, t) = M du/dt (ODE is expressed in IMPLICIT form)
|
||||
* G(u, t) = - K(u) u
|
||||
*/
|
||||
class ConductionOperator : public TimeDependentOperator
|
||||
{
|
||||
protected:
|
||||
FiniteElementSpace &fespace;
|
||||
Array<int> ess_tdof_list; // this list remains empty for pure Neumann b.c.
|
||||
|
||||
BilinearForm *M;
|
||||
BilinearForm *K;
|
||||
BilinearForm M;
|
||||
SparseMatrix Mmat;
|
||||
|
||||
SparseMatrix Mmat, Kmat;
|
||||
SparseMatrix *T; // T = M + dt K
|
||||
const real_t alpha, kappa;
|
||||
std::unique_ptr<BilinearForm> K;
|
||||
SparseMatrix Kmat;
|
||||
|
||||
std::unique_ptr<SparseMatrix> T; // T = M + gam K(u)
|
||||
|
||||
CGSolver M_solver; // Krylov solver for inverting the mass matrix M
|
||||
DSmoother M_prec; // Preconditioner for the mass matrix M
|
||||
|
||||
CGSolver T_solver; // Implicit solver for T = M + dt K
|
||||
CGSolver T_solver; // Implicit solver for T = M + gam K(u)
|
||||
DSmoother T_prec; // Preconditioner for the implicit solver
|
||||
|
||||
double alpha, kappa;
|
||||
|
||||
mutable Vector z; // auxiliary vector
|
||||
|
||||
public:
|
||||
ConductionOperator(FiniteElementSpace &f, double alpha, double kappa,
|
||||
const Vector &u);
|
||||
|
||||
virtual void Mult(const Vector &u, Vector &du_dt) const;
|
||||
ConductionOperator(FiniteElementSpace &f, const real_t alpha,
|
||||
const real_t kappa, const Vector &u,
|
||||
const Type &ode_expression_type);
|
||||
|
||||
/** Solve the Backward-Euler equation: k = f(u + dt*k, t), for the unknown k.
|
||||
This is the only requirement for high-order SDIRK implicit integration.*/
|
||||
virtual void ImplicitSolve(const double dt, const Vector &u, Vector &k);
|
||||
// Compute K(u_n) for use as an approximation in - K(u) u
|
||||
void SetConductionTensor(const Vector &u);
|
||||
|
||||
/// Custom Jacobian system solver for the SUNDIALS time integrators.
|
||||
/** For the ODE system represented by ConductionOperator
|
||||
/** Compute G(u, t) as defined in the IMPLICIT expression form of the ODE
|
||||
operator, i.e., @a v = - K(u_n) @a u. Note that K(u_n) is an
|
||||
approximation to K(u). */
|
||||
void ExplicitMult(const Vector &u, Vector &v) const override;
|
||||
|
||||
M du/dt = -K(u),
|
||||
/** Solve for k in F(u, k, t) = G(u, t) for either EXPLICIT or IMPLICIT
|
||||
expression forms of the ODE operator, i.e., @a k = - inv(M) K(u_n) @a u.
|
||||
Note that K(u_n) is an approximation to K(u). */
|
||||
void Mult(const Vector &u, Vector &k) const override;
|
||||
|
||||
this class facilitates the solution of linear systems of the form
|
||||
/** Solve for k in F(u + gam*k, k, t) = G(u + gam*k, t) for either EXPLICIT
|
||||
or IMPLICIT expression forms of the ODE operator, i.e.,
|
||||
[ M + @a gam K(u_n) ] @a k = - K(u_n) @a u . Note that K(u_n) is an
|
||||
approximation to K(u). */
|
||||
void ImplicitSolve(const real_t gam, const Vector &u, Vector &k) override;
|
||||
|
||||
(M + γK) y = M b,
|
||||
/** Setup to solve for dk in [dF/dk + gam*dF/du - gam*dG/du] dk = G - F for
|
||||
either EXPLICIT or IMPLICIT expression forms of the ODE operator, i.e.,
|
||||
[M - @a gam Jf(u)] dk = G - F, where Jf(u) is an approximation of the
|
||||
Jacobian of -K(u) u. The approximation chosen here is Jf(u) = -K(u_n). */
|
||||
int SUNImplicitSetup(const Vector &u, const Vector &fu, int jok, int *jcur,
|
||||
real_t gam) override;
|
||||
|
||||
for given b, u (not used), and γ = GetTimeStep(). */
|
||||
/** Solve for @a dk in the system in SUNImplicitSetup to the given tolerance,
|
||||
with the residual @a r providing either
|
||||
1. @a r = G - F = inv(M) f(u) - k (EXPLICIT expression form)
|
||||
1. @a r = G - F = f(u) - M k (IMPLICIT expression form)
|
||||
*/
|
||||
int SUNImplicitSolve(const Vector &r, Vector &dk, real_t tol) override;
|
||||
|
||||
/** Setup the system (M + dt K) x = M b. This method is used by the implicit
|
||||
SUNDIALS solvers. */
|
||||
virtual int SUNImplicitSetup(const Vector &x, const Vector &fx,
|
||||
int jok, int *jcur, double gamma);
|
||||
int SUNMassSetup() override;
|
||||
|
||||
/** Solve the system (M + dt K) x = M b. This method is used by the implicit
|
||||
SUNDIALS solvers. */
|
||||
virtual int SUNImplicitSolve(const Vector &b, Vector &x, double tol);
|
||||
int SUNMassSolve(const Vector &b, Vector &x, real_t tol) override;
|
||||
|
||||
/// Update the diffusion BilinearForm K using the given true-dof vector `u`.
|
||||
void SetParameters(const Vector &u);
|
||||
|
||||
virtual ~ConductionOperator();
|
||||
int SUNMassMult(const Vector &x, Vector &v) override;
|
||||
};
|
||||
|
||||
double InitialTemperature(const Vector &x);
|
||||
real_t InitialTemperature(const Vector &x)
|
||||
{
|
||||
if (x.Norml2() < 0.5)
|
||||
{
|
||||
return 2.0;
|
||||
}
|
||||
else
|
||||
{
|
||||
return 1.0;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -117,16 +150,16 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 2;
|
||||
int order = 2;
|
||||
int ode_solver_type = 9; // CVODE implicit BDF
|
||||
double t_final = 0.5;
|
||||
double dt = 1.0e-2;
|
||||
double alpha = 1.0e-2;
|
||||
double kappa = 0.5;
|
||||
real_t t_final = 0.5;
|
||||
real_t dt = 1.0e-2;
|
||||
real_t alpha = 1.0e-2;
|
||||
real_t kappa = 0.5;
|
||||
bool visualization = true;
|
||||
bool visit = false;
|
||||
int vis_steps = 5;
|
||||
|
||||
// Relative and absolute tolerances for CVODE and ARKODE.
|
||||
const double reltol = 1e-4, abstol = 1e-4;
|
||||
const real_t reltol = 1e-4, abstol = 1e-4;
|
||||
|
||||
int precision = 8;
|
||||
cout.precision(precision);
|
||||
@@ -151,7 +184,10 @@ int main(int argc, char *argv[])
|
||||
"9 - CVODE (implicit BDF),\n\t"
|
||||
"10 - ARKODE (default explicit),\n\t"
|
||||
"11 - ARKODE (explicit Fehlberg-6-4-5),\n\t"
|
||||
"12 - ARKODE (default impicit).");
|
||||
"12 - ARKODE (default implicit),\n\t"
|
||||
"13 - ARKODE (default explicit with MFEM mass solve),\n\t"
|
||||
"14 - ARKODE (explicit Fehlberg-6-4-5 with MFEM mass solve),\n\t"
|
||||
"15 - ARKODE (default implicit with MFEM mass solve).");
|
||||
args.AddOption(&t_final, "-tf", "--t-final",
|
||||
"Final time; start time is 0.");
|
||||
args.AddOption(&dt, "-dt", "--time-step",
|
||||
@@ -174,16 +210,13 @@ int main(int argc, char *argv[])
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
if (ode_solver_type < 1 || ode_solver_type > 12)
|
||||
{
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
return 3;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
bool use_mass_solver = ode_solver_type >= 13;
|
||||
|
||||
// 2. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral and hexahedral meshes with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
std::unique_ptr<Mesh> mesh(new Mesh(mesh_file, 1, 1));
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 3. Refine the mesh to increase the resolution. In this example we do
|
||||
@@ -197,7 +230,7 @@ int main(int argc, char *argv[])
|
||||
// 4. Define the vector finite element space representing the current and the
|
||||
// initial temperature, u_ref.
|
||||
H1_FECollection fe_coll(order, dim);
|
||||
FiniteElementSpace fespace(mesh, &fe_coll);
|
||||
FiniteElementSpace fespace(mesh.get(), &fe_coll);
|
||||
|
||||
int fe_size = fespace.GetTrueVSize();
|
||||
cout << "Number of temperature unknowns: " << fe_size << endl;
|
||||
@@ -211,8 +244,17 @@ int main(int argc, char *argv[])
|
||||
Vector u;
|
||||
u_gf.GetTrueDofs(u);
|
||||
|
||||
// 6. Initialize the conduction operator and the visualization.
|
||||
ConductionOperator oper(fespace, alpha, kappa, u);
|
||||
// 6. Initialize the conduction ODE operator and the visualization.
|
||||
ConductionOperator::Type ode_expression_type;
|
||||
if (use_mass_solver)
|
||||
{
|
||||
ode_expression_type = ConductionOperator::Type::IMPLICIT;
|
||||
}
|
||||
else
|
||||
{
|
||||
ode_expression_type = ConductionOperator::Type::EXPLICIT;
|
||||
}
|
||||
ConductionOperator oper(fespace, alpha, kappa, u, ode_expression_type);
|
||||
|
||||
u_gf.SetFromTrueDofs(u);
|
||||
{
|
||||
@@ -224,7 +266,7 @@ int main(int argc, char *argv[])
|
||||
u_gf.Save(osol);
|
||||
}
|
||||
|
||||
VisItDataCollection visit_dc("Example16", mesh);
|
||||
VisItDataCollection visit_dc("Example16", mesh.get());
|
||||
visit_dc.RegisterField("temperature", &u_gf);
|
||||
if (visit)
|
||||
{
|
||||
@@ -258,52 +300,75 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
// 7. Define the ODE solver used for time integration.
|
||||
double t = 0.0;
|
||||
ODESolver *ode_solver = NULL;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKStepSolver *arkode = NULL;
|
||||
real_t t = 0.0;
|
||||
std::unique_ptr<ODESolver> ode_solver;
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
// MFEM explicit methods
|
||||
case 1: ode_solver = new ForwardEulerSolver; break;
|
||||
case 2: ode_solver = new RK2Solver(0.5); break; // midpoint method
|
||||
case 3: ode_solver = new RK3SSPSolver; break;
|
||||
case 4: ode_solver = new RK4Solver; break;
|
||||
case 1: ode_solver = std::make_unique<ForwardEulerSolver>(); break;
|
||||
case 2: ode_solver = std::make_unique<RK2Solver>(0.5); break; // midpoint method
|
||||
case 3: ode_solver = std::make_unique<RK3SSPSolver>(); break;
|
||||
case 4: ode_solver = std::make_unique<RK4Solver>(); break;
|
||||
// MFEM implicit L-stable methods
|
||||
case 5: ode_solver = new BackwardEulerSolver; break;
|
||||
case 6: ode_solver = new SDIRK23Solver(2); break;
|
||||
case 7: ode_solver = new SDIRK33Solver; break;
|
||||
case 5: ode_solver = std::make_unique<BackwardEulerSolver>(); break;
|
||||
case 6: ode_solver = std::make_unique<SDIRK23Solver>(2); break;
|
||||
case 7: ode_solver = std::make_unique<SDIRK33Solver>(); break;
|
||||
// CVODE
|
||||
case 8:
|
||||
cvode = new CVODESolver(CV_ADAMS);
|
||||
cvode->Init(oper);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
case 9:
|
||||
cvode = new CVODESolver(CV_BDF);
|
||||
{
|
||||
int cvode_solver_type;
|
||||
if (ode_solver_type == 8)
|
||||
{
|
||||
cvode_solver_type = CV_ADAMS;
|
||||
}
|
||||
else
|
||||
{
|
||||
cvode_solver_type = CV_BDF;
|
||||
}
|
||||
std::unique_ptr<CVODESolver> cvode(new CVODESolver(cvode_solver_type));
|
||||
cvode->Init(oper);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
ode_solver = std::move(cvode);
|
||||
break;
|
||||
}
|
||||
// ARKODE
|
||||
case 10:
|
||||
case 11:
|
||||
arkode = new ARKStepSolver(ARKStepSolver::EXPLICIT);
|
||||
case 12:
|
||||
case 13:
|
||||
case 14:
|
||||
case 15:
|
||||
{
|
||||
ARKStepSolver::Type arkode_solver_type;
|
||||
if (ode_solver_type == 12 || ode_solver_type == 15)
|
||||
{
|
||||
arkode_solver_type = ARKStepSolver::IMPLICIT;
|
||||
}
|
||||
else
|
||||
{
|
||||
arkode_solver_type = ARKStepSolver::EXPLICIT;
|
||||
}
|
||||
std::unique_ptr<ARKStepSolver> arkode(
|
||||
new ARKStepSolver(arkode_solver_type));
|
||||
arkode->Init(oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 11)
|
||||
if (ode_solver_type == 11 || ode_solver_type == 14)
|
||||
{
|
||||
arkode->SetERKTableNum(ARKODE_FEHLBERG_13_7_8);
|
||||
}
|
||||
ode_solver = arkode; break;
|
||||
case 12:
|
||||
arkode = new ARKStepSolver(ARKStepSolver::IMPLICIT);
|
||||
arkode->Init(oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
ode_solver = arkode; break;
|
||||
if (use_mass_solver)
|
||||
{
|
||||
arkode->UseMFEMMassLinearSolver(SUNFALSE);
|
||||
}
|
||||
ode_solver = std::move(arkode);
|
||||
break;
|
||||
}
|
||||
default:
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
return 3;
|
||||
}
|
||||
|
||||
// Initialize MFEM integrators, SUNDIALS integrators are initialized above
|
||||
@@ -311,8 +376,14 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Since we want to update the diffusion coefficient after every time step,
|
||||
// we need to use the "one-step" mode of the SUNDIALS solvers.
|
||||
if (cvode) { cvode->SetStepMode(CV_ONE_STEP); }
|
||||
if (arkode) { arkode->SetStepMode(ARK_ONE_STEP); }
|
||||
if (CVODESolver* cvode = dynamic_cast<CVODESolver*>(ode_solver.get()))
|
||||
{
|
||||
cvode->SetStepMode(CV_ONE_STEP);
|
||||
}
|
||||
else if (ARKStepSolver* arkode = dynamic_cast<ARKStepSolver*>(ode_solver.get()))
|
||||
{
|
||||
arkode->SetStepMode(ARK_ONE_STEP);
|
||||
}
|
||||
|
||||
// 8. Perform time-integration (looping over the time iterations, ti, with a
|
||||
// time-step dt).
|
||||
@@ -323,7 +394,7 @@ int main(int argc, char *argv[])
|
||||
bool last_step = false;
|
||||
for (int ti = 1; !last_step; ti++)
|
||||
{
|
||||
double dt_real = min(dt, t_final - t);
|
||||
real_t dt_real = min(dt, t_final - t);
|
||||
|
||||
// Note that since we are using the "one-step" mode of the SUNDIALS
|
||||
// solvers, they will, generally, step over the final time and will not
|
||||
@@ -337,8 +408,14 @@ int main(int argc, char *argv[])
|
||||
if (last_step || (ti % vis_steps) == 0)
|
||||
{
|
||||
cout << "step " << ti << ", t = " << t << endl;
|
||||
if (cvode) { cvode->PrintInfo(); }
|
||||
if (arkode) { arkode->PrintInfo(); }
|
||||
if (CVODESolver* cvode = dynamic_cast<CVODESolver*>(ode_solver.get()))
|
||||
{
|
||||
cvode->PrintInfo();
|
||||
}
|
||||
else if (ARKStepSolver* arkode = dynamic_cast<ARKStepSolver*>(ode_solver.get()))
|
||||
{
|
||||
arkode->PrintInfo();
|
||||
}
|
||||
|
||||
u_gf.SetFromTrueDofs(u);
|
||||
if (visualization)
|
||||
@@ -353,137 +430,153 @@ int main(int argc, char *argv[])
|
||||
visit_dc.Save();
|
||||
}
|
||||
}
|
||||
oper.SetParameters(u);
|
||||
oper.SetConductionTensor(u);
|
||||
}
|
||||
tic_toc.Stop();
|
||||
cout << "Done, " << tic_toc.RealTime() << "s." << endl;
|
||||
|
||||
// 9. Save the final solution. This output can be viewed later using GLVis:
|
||||
// "glvis -m ex16.mesh -g ex16-final.gf".
|
||||
{
|
||||
ofstream osol("ex16-final.gf");
|
||||
osol.precision(precision);
|
||||
u_gf.Save(osol);
|
||||
}
|
||||
|
||||
// 10. Free the used memory.
|
||||
delete ode_solver;
|
||||
delete mesh;
|
||||
u_gf.Save("ex16-final.gf", precision);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
ConductionOperator::ConductionOperator(FiniteElementSpace &f, double al,
|
||||
double kap, const Vector &u)
|
||||
: TimeDependentOperator(f.GetTrueVSize(), 0.0), fespace(f), M(NULL), K(NULL),
|
||||
T(NULL), z(height)
|
||||
ConductionOperator::ConductionOperator(FiniteElementSpace &fes,
|
||||
const real_t alpha, const real_t kappa,
|
||||
const Vector &u,
|
||||
const Type &ode_expression_type)
|
||||
: TimeDependentOperator(fes.GetTrueVSize(), 0.0, ode_expression_type),
|
||||
fespace(fes), alpha(alpha), kappa(kappa), M(&fespace), z(height)
|
||||
{
|
||||
const double rel_tol = 1e-8;
|
||||
// specify a relative tolerance for all solves with MFEM integrators
|
||||
const real_t rel_tol = 1e-8;
|
||||
|
||||
M = new BilinearForm(&fespace);
|
||||
M->AddDomainIntegrator(new MassIntegrator());
|
||||
M->Assemble();
|
||||
M->FormSystemMatrix(ess_tdof_list, Mmat);
|
||||
M.AddDomainIntegrator(new MassIntegrator());
|
||||
M.Assemble();
|
||||
M.FormSystemMatrix(ess_tdof_list, Mmat);
|
||||
|
||||
M_solver.iterative_mode = false;
|
||||
M_solver.SetRelTol(rel_tol);
|
||||
M_solver.SetRelTol(rel_tol); // will be overwritten with SUNDIALS integrators
|
||||
M_solver.SetAbsTol(0.0);
|
||||
M_solver.SetMaxIter(50);
|
||||
M_solver.SetPrintLevel(0);
|
||||
M_solver.SetPreconditioner(M_prec);
|
||||
M_solver.SetOperator(Mmat);
|
||||
|
||||
alpha = al;
|
||||
kappa = kap;
|
||||
|
||||
T_solver.iterative_mode = false;
|
||||
T_solver.SetRelTol(rel_tol);
|
||||
T_solver.SetRelTol(rel_tol); // will be overwritten with SUNDIALS integrators
|
||||
T_solver.SetAbsTol(0.0);
|
||||
T_solver.SetMaxIter(100);
|
||||
T_solver.SetPrintLevel(0);
|
||||
T_solver.SetPreconditioner(T_prec);
|
||||
|
||||
SetParameters(u);
|
||||
SetConductionTensor(u);
|
||||
}
|
||||
|
||||
void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
|
||||
{
|
||||
// Compute:
|
||||
// du_dt = M^{-1}*-K(u)
|
||||
// for du_dt
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg(); // z = -z
|
||||
M_solver.Mult(z, du_dt);
|
||||
}
|
||||
|
||||
void ConductionOperator::ImplicitSolve(const double dt,
|
||||
const Vector &u, Vector &du_dt)
|
||||
{
|
||||
// Solve the equation:
|
||||
// du_dt = M^{-1}*[-K(u + dt*du_dt)]
|
||||
// for du_dt
|
||||
if (T) { delete T; }
|
||||
T = Add(1.0, Mmat, dt, Kmat);
|
||||
T_solver.SetOperator(*T);
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg();
|
||||
T_solver.Mult(z, du_dt);
|
||||
}
|
||||
|
||||
void ConductionOperator::SetParameters(const Vector &u)
|
||||
void ConductionOperator::SetConductionTensor(const Vector &u)
|
||||
{
|
||||
// Compute K(u_n).
|
||||
GridFunction u_alpha_gf(&fespace);
|
||||
u_alpha_gf.SetFromTrueDofs(u);
|
||||
for (int i = 0; i < u_alpha_gf.Size(); i++)
|
||||
{
|
||||
u_alpha_gf(i) = kappa + alpha*u_alpha_gf(i);
|
||||
}
|
||||
|
||||
delete K;
|
||||
K = new BilinearForm(&fespace);
|
||||
|
||||
GridFunctionCoefficient u_coeff(&u_alpha_gf);
|
||||
|
||||
K = std::make_unique<BilinearForm>(&fespace);
|
||||
K->AddDomainIntegrator(new DiffusionIntegrator(u_coeff));
|
||||
K->Assemble();
|
||||
K->FormSystemMatrix(ess_tdof_list, Kmat);
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNImplicitSetup(const Vector &x,
|
||||
const Vector &fx, int jok, int *jcur,
|
||||
double gamma)
|
||||
void ConductionOperator::ExplicitMult(const Vector &u, Vector &v) const
|
||||
{
|
||||
// Setup the ODE Jacobian T = M + gamma K.
|
||||
if (T) { delete T; }
|
||||
T = Add(1.0, Mmat, gamma, Kmat);
|
||||
// Compute - K(u_n) u.
|
||||
Kmat.Mult(u, v);
|
||||
v.Neg();
|
||||
}
|
||||
|
||||
void ConductionOperator::Mult(const Vector &u, Vector &k) const
|
||||
{
|
||||
// Compute - inv(M) K(u_n) u.
|
||||
ExplicitMult(u, z);
|
||||
M_solver.Mult(z, k);
|
||||
}
|
||||
|
||||
void ConductionOperator::ImplicitSolve(const real_t gam, const Vector &u,
|
||||
Vector &k)
|
||||
{
|
||||
// Solve for k in M k = - K(u_n) [u + gam*k].
|
||||
ExplicitMult(u, z);
|
||||
T = std::unique_ptr<SparseMatrix>(Add(1.0, Mmat, gam, Kmat));
|
||||
T_solver.SetOperator(*T);
|
||||
*jcur = 1;
|
||||
return (0);
|
||||
T_solver.Mult(z, k);
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNImplicitSolve(const Vector &b, Vector &x, double tol)
|
||||
int ConductionOperator::SUNImplicitSetup(const Vector &u, const Vector &fu,
|
||||
int jok, int *jcur, real_t gam)
|
||||
{
|
||||
// Solve the system A x = z => (M - gamma K) x = M b.
|
||||
Mmat.Mult(b, z);
|
||||
T_solver.Mult(z, x);
|
||||
return (0);
|
||||
// Compute T = M + gamma K(u_n).
|
||||
T = std::unique_ptr<SparseMatrix>(Add(1.0, Mmat, gam, Kmat));
|
||||
T_solver.SetOperator(*T);
|
||||
*jcur = SUNTRUE; // this should eventually only be set true if K(u) is used
|
||||
return SUNLS_SUCCESS;
|
||||
}
|
||||
|
||||
ConductionOperator::~ConductionOperator()
|
||||
int ConductionOperator::SUNImplicitSolve(const Vector &r, Vector &dk,
|
||||
real_t tol)
|
||||
{
|
||||
delete T;
|
||||
delete M;
|
||||
delete K;
|
||||
}
|
||||
|
||||
double InitialTemperature(const Vector &x)
|
||||
{
|
||||
if (x.Norml2() < 0.5)
|
||||
// Solve the system [M + gamma K(u_n)] dk = - K(u_n) u - M k.
|
||||
// What value r is providing depends on the ODE expression form:
|
||||
// EXPLICIT form: r = -inv(M) K(u_n) u - k
|
||||
// IMPLICIT form: r = -K(u_n) u - M k
|
||||
T_solver.SetRelTol(tol);
|
||||
if (isExplicit())
|
||||
{
|
||||
return 2.0;
|
||||
Mmat.Mult(r, z);
|
||||
T_solver.Mult(z, dk);
|
||||
}
|
||||
else
|
||||
{
|
||||
return 1.0;
|
||||
T_solver.Mult(r, dk);
|
||||
}
|
||||
if (T_solver.GetConverged())
|
||||
{
|
||||
return SUNLS_SUCCESS;
|
||||
}
|
||||
else
|
||||
{
|
||||
return SUNLS_CONV_FAIL;
|
||||
}
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNMassSetup()
|
||||
{
|
||||
// Do nothing b/c mass solver was setup in constructor.
|
||||
return SUNLS_SUCCESS;
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNMassSolve(const Vector &b, Vector &x, real_t tol)
|
||||
{
|
||||
// Solve the system M x = b.
|
||||
M_solver.SetRelTol(tol);
|
||||
M_solver.Mult(b, x);
|
||||
if (M_solver.GetConverged())
|
||||
{
|
||||
return SUNLS_SUCCESS;
|
||||
}
|
||||
else
|
||||
{
|
||||
return SUNLS_CONV_FAIL;
|
||||
}
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNMassMult(const Vector &x, Vector &v)
|
||||
{
|
||||
// Compute M x.
|
||||
Mmat.Mult(x, v);
|
||||
return SUNLS_SUCCESS;
|
||||
}
|
||||
|
||||
|
||||
+285
-188
@@ -1,16 +1,22 @@
|
||||
// MFEM Example 16 - Parallel Version
|
||||
// SUNDIALS Modification
|
||||
//
|
||||
// Compile with: make ex16p
|
||||
// Compile with:
|
||||
// make ex16p (GNU make)
|
||||
// make sundials_ex16p (CMake)
|
||||
//
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex16p
|
||||
// mpirun -np 4 ex16p -m ../../data/inline-tri.mesh
|
||||
// mpirun -np 4 ex16p -m ../../data/disc-nurbs.mesh -tf 2
|
||||
// mpirun -np 4 ex16p -s 12 -a 0.0 -k 1.0
|
||||
// mpirun -np 4 ex16p -s 15 -a 0.0 -k 1.0
|
||||
// mpirun -np 4 ex16p -s 8 -a 1.0 -k 0.0 -dt 4e-6 -tf 2e-2 -vs 50
|
||||
// mpirun -np 4 ex16p -s 11 -a 1.0 -k 0.0 -dt 4e-6 -tf 2e-2 -vs 50
|
||||
// mpirun -np 8 ex16p -s 9 -a 0.5 -k 0.5 -o 4 -dt 8e-6 -tf 2e-2 -vs 50
|
||||
// mpirun -np 8 ex16p -s 12 -a 0.5 -k 0.5 -o 4 -dt 8e-6 -tf 2e-2 -vs 50
|
||||
// mpirun -np 4 ex16p -s 10 -dt 2.0e-4 -tf 4.0e-2
|
||||
// mpirun -np 4 ex16p -s 13 -dt 2.0e-4 -tf 4.0e-2
|
||||
// mpirun -np 16 ex16p -m ../../data/fichera-q2.mesh
|
||||
// mpirun -np 16 ex16p -m ../../data/escher-p2.mesh
|
||||
// mpirun -np 8 ex16p -m ../../data/beam-tet.mesh -tf 10 -dt 0.1
|
||||
@@ -38,66 +44,102 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
/** After spatial discretization, the conduction model can be written as:
|
||||
/** After spatial discretization, the conduction model is expressed as
|
||||
*
|
||||
* du/dt = M^{-1}(-Ku)
|
||||
* M du/dt = - K(u) u
|
||||
*
|
||||
* where u is the vector representing the temperature, M is the mass matrix,
|
||||
* and K is the diffusion operator with diffusivity depending on u:
|
||||
* and K(u) is the diffusion operator with diffusivity depending on u:
|
||||
* (\kappa + \alpha u).
|
||||
*
|
||||
* Class ConductionOperator represents the right-hand side of the above ODE.
|
||||
* Class ConductionOperatorOperator represents the above ODE operator in the
|
||||
* general form F(u, k, t) = G(u, t) where either
|
||||
*
|
||||
* 1. F(u, du/dt, t) = du/dt (ODE is expressed in EXPLICIT form)
|
||||
* G(u, t) = - inv(M) K(u) u
|
||||
* 2. F(u, du/dt, t) = M du/dt (ODE is expressed in IMPLICIT form)
|
||||
* G(u, t) = - K(u) u
|
||||
*/
|
||||
class ConductionOperator : public TimeDependentOperator
|
||||
{
|
||||
protected:
|
||||
ParFiniteElementSpace &fespace;
|
||||
Array<int> ess_tdof_list; // this list remains empty for pure Neumann b.c.
|
||||
|
||||
ParBilinearForm *M;
|
||||
ParBilinearForm *K;
|
||||
|
||||
ParBilinearForm M;
|
||||
HypreParMatrix Mmat;
|
||||
|
||||
const real_t alpha, kappa;
|
||||
std::unique_ptr<BilinearForm> K;
|
||||
HypreParMatrix Kmat;
|
||||
HypreParMatrix *T; // T = M + dt K
|
||||
double current_dt;
|
||||
|
||||
CGSolver M_solver; // Krylov solver for inverting the mass matrix M
|
||||
HypreSmoother M_prec; // Preconditioner for the mass matrix M
|
||||
std::unique_ptr<HypreParMatrix> T; // T = M + gam K(u)
|
||||
|
||||
CGSolver T_solver; // Implicit solver for T = M + dt K
|
||||
HypreSmoother T_prec; // Preconditioner for the implicit solver
|
||||
CGSolver M_solver; // Krylov solver for inverting the mass matrix M
|
||||
HypreSmoother M_prec; // Preconditioner for the mass matrix M
|
||||
|
||||
double alpha, kappa;
|
||||
CGSolver T_solver; // Implicit solver for T = M + gam K(u)
|
||||
HypreSmoother T_prec; // Preconditioner for the implicit solver
|
||||
|
||||
mutable Vector z; // auxiliary vector
|
||||
|
||||
public:
|
||||
ConductionOperator(ParFiniteElementSpace &f, double alpha, double kappa,
|
||||
const Vector &u);
|
||||
|
||||
virtual void Mult(const Vector &u, Vector &du_dt) const;
|
||||
ConductionOperator(ParFiniteElementSpace &f, const real_t alpha,
|
||||
const real_t kappa, const Vector &u,
|
||||
const Type &ode_expression_type);
|
||||
|
||||
/** Solve the Backward-Euler equation: k = f(u + dt*k, t), for the unknown k.
|
||||
This is the only requirement for high-order SDIRK implicit integration.*/
|
||||
virtual void ImplicitSolve(const double dt, const Vector &u, Vector &k);
|
||||
// Compute K(u_n) for use as an approximation in - K(u) u
|
||||
void SetConductionTensor(const Vector &u);
|
||||
|
||||
/** Setup the system (M + dt K) x = M b. This method is used by the implicit
|
||||
SUNDIALS solvers. */
|
||||
virtual int SUNImplicitSetup(const Vector &x, const Vector &fx,
|
||||
int jok, int *jcur, double gamma);
|
||||
/** Compute G(u, t) as defined in the IMPLICIT expression form of the ODE
|
||||
operator, i.e., @a v = - K(u_n) @a u. Note that K(u_n) is an
|
||||
approximation to K(u). */
|
||||
void ExplicitMult(const Vector &u, Vector &v) const override;
|
||||
|
||||
/** Solve the system (M + dt K) x = M b. This method is used by the implicit
|
||||
SUNDIALS solvers. */
|
||||
virtual int SUNImplicitSolve(const Vector &b, Vector &x, double tol);
|
||||
/** Solve for k in F(u, k, t) = G(u, t) for either EXPLICIT or IMPLICIT
|
||||
expression forms of the ODE operator, i.e., @a k = - inv(M) K(u_n) @a u.
|
||||
Note that K(u_n) is an approximation to K(u). */
|
||||
void Mult(const Vector &u, Vector &k) const override;
|
||||
|
||||
/// Update the diffusion BilinearForm K using the given true-dof vector `u`.
|
||||
void SetParameters(const Vector &u);
|
||||
/** Solve for k in F(u + gam*k, k, t) = G(u + gam*k, t) for either EXPLICIT
|
||||
or IMPLICIT expression forms of the ODE operator, i.e.,
|
||||
[ M + @a gam K(u_n) ] @a k = - K(u_n) @a u . Note that K(u_n) is an
|
||||
approximation to K(u). */
|
||||
void ImplicitSolve(const real_t gam, const Vector &u, Vector &k) override;
|
||||
|
||||
virtual ~ConductionOperator();
|
||||
/** Setup to solve for dk in [dF/dk + gam*dF/du - gam*dG/du] dk = G - F for
|
||||
either EXPLICIT or IMPLICIT expression forms of the ODE operator, i.e.,
|
||||
[M - @a gam Jf(u)] dk = G - F, where Jf(u) is an approximation of the
|
||||
Jacobian of -K(u) u. The approximation chosen here is Jf(u) = -K(u_n). */
|
||||
int SUNImplicitSetup(const Vector &u, const Vector &fu, int jok, int *jcur,
|
||||
real_t gam) override;
|
||||
|
||||
/** Solve for @a dk in the system in SUNImplicitSetup to the given tolerance,
|
||||
with the residual @a r providing either
|
||||
1. @a r = G - F = inv(M) f(u) - k (EXPLICIT expression form)
|
||||
1. @a r = G - F = f(u) - M k (IMPLICIT expression form)
|
||||
*/
|
||||
int SUNImplicitSolve(const Vector &r, Vector &dk, real_t tol) override;
|
||||
|
||||
int SUNMassSetup() override;
|
||||
|
||||
int SUNMassSolve(const Vector &b, Vector &x, real_t tol) override;
|
||||
|
||||
int SUNMassMult(const Vector &x, Vector &v) override;
|
||||
};
|
||||
|
||||
double InitialTemperature(const Vector &x);
|
||||
real_t InitialTemperature(const Vector &x)
|
||||
{
|
||||
if (x.Norml2() < 0.5)
|
||||
{
|
||||
return 2.0;
|
||||
}
|
||||
else
|
||||
{
|
||||
return 1.0;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -114,16 +156,16 @@ int main(int argc, char *argv[])
|
||||
int par_ref_levels = 1;
|
||||
int order = 2;
|
||||
int ode_solver_type = 9; // CVODE implicit BDF
|
||||
double t_final = 0.5;
|
||||
double dt = 1.0e-2;
|
||||
double alpha = 1.0e-2;
|
||||
double kappa = 0.5;
|
||||
real_t t_final = 0.5;
|
||||
real_t dt = 1.0e-2;
|
||||
real_t alpha = 1.0e-2;
|
||||
real_t kappa = 0.5;
|
||||
bool visualization = true;
|
||||
bool visit = false;
|
||||
int vis_steps = 5;
|
||||
|
||||
// Relative and absolute tolerances for CVODE and ARKODE.
|
||||
const double reltol = 1e-4, abstol = 1e-4;
|
||||
const real_t reltol = 1e-4, abstol = 1e-4;
|
||||
|
||||
int precision = 8;
|
||||
cout.precision(precision);
|
||||
@@ -150,7 +192,10 @@ int main(int argc, char *argv[])
|
||||
"9 - CVODE (implicit BDF),\n\t"
|
||||
"10 - ARKODE (default explicit),\n\t"
|
||||
"11 - ARKODE (explicit Fehlberg-6-4-5),\n\t"
|
||||
"12 - ARKODE (default impicit).");
|
||||
"12 - ARKODE (default implicit),\n\t"
|
||||
"13 - ARKODE (default explicit with MFEM mass solve),\n\t"
|
||||
"14 - ARKODE (explicit Fehlberg-6-4-5 with MFEM mass solve),\n\t"
|
||||
"15 - ARKODE (default implicit with MFEM mass solve).");
|
||||
args.AddOption(&t_final, "-tf", "--t-final",
|
||||
"Final time; start time is 0.");
|
||||
args.AddOption(&dt, "-dt", "--time-step",
|
||||
@@ -174,40 +219,33 @@ int main(int argc, char *argv[])
|
||||
return 1;
|
||||
}
|
||||
|
||||
if (myid == 0)
|
||||
if (Mpi::Root())
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
// check for valid ODE solver option
|
||||
if (ode_solver_type < 1 || ode_solver_type > 12)
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
}
|
||||
return 1;
|
||||
}
|
||||
bool use_mass_solver = ode_solver_type >= 13;
|
||||
|
||||
// 3. Read the serial mesh from the given mesh file on all processors. We can
|
||||
// 3. Define a parallel mesh by a partitioning of a serial mesh. Read the
|
||||
// serial mesh from the given mesh file on all processors. We can
|
||||
// handle triangular, quadrilateral, tetrahedral and hexahedral meshes
|
||||
// with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 4. Refine the mesh in serial to increase the resolution. In this example
|
||||
// we do 'ser_ref_levels' of uniform refinement, where 'ser_ref_levels' is
|
||||
// a command-line parameter.
|
||||
for (int lev = 0; lev < ser_ref_levels; lev++)
|
||||
std::unique_ptr<ParMesh> pmesh;
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
std::unique_ptr<Mesh> mesh(new Mesh(mesh_file, 1, 1));
|
||||
|
||||
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
delete mesh;
|
||||
// 4. Refine the mesh in serial to increase the resolution. In this example
|
||||
// we do 'ser_ref_levels' of uniform refinement, where 'ser_ref_levels' is
|
||||
// a command-line parameter.
|
||||
for (int lev = 0; lev < ser_ref_levels; lev++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 5. Refine this mesh further in parallel to increase the resolution.
|
||||
// Once the parallel mesh is defined, the serial mesh can be deleted.
|
||||
pmesh = std::make_unique<ParMesh>(MPI_COMM_WORLD, *mesh);
|
||||
}
|
||||
for (int lev = 0; lev < par_ref_levels; lev++)
|
||||
{
|
||||
pmesh->UniformRefinement();
|
||||
@@ -215,8 +253,9 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 6. Define the vector finite element space representing the current and the
|
||||
// initial temperature, u_ref.
|
||||
int dim = pmesh->Dimension();
|
||||
H1_FECollection fe_coll(order, dim);
|
||||
ParFiniteElementSpace fespace(pmesh, &fe_coll);
|
||||
ParFiniteElementSpace fespace(pmesh.get(), &fe_coll);
|
||||
|
||||
int fe_size = fespace.GlobalTrueVSize();
|
||||
if (myid == 0)
|
||||
@@ -233,8 +272,17 @@ int main(int argc, char *argv[])
|
||||
Vector u;
|
||||
u_gf.GetTrueDofs(u);
|
||||
|
||||
// 8. Initialize the conduction operator and the VisIt visualization.
|
||||
ConductionOperator oper(fespace, alpha, kappa, u);
|
||||
// 8. Initialize the conduction ODE operator and the visualization.
|
||||
ConductionOperator::Type ode_expression_type;
|
||||
if (use_mass_solver)
|
||||
{
|
||||
ode_expression_type = ConductionOperator::Type::IMPLICIT;
|
||||
}
|
||||
else
|
||||
{
|
||||
ode_expression_type = ConductionOperator::Type::EXPLICIT;
|
||||
}
|
||||
ConductionOperator oper(fespace, alpha, kappa, u, ode_expression_type);
|
||||
|
||||
u_gf.SetFromTrueDofs(u);
|
||||
{
|
||||
@@ -249,7 +297,7 @@ int main(int argc, char *argv[])
|
||||
u_gf.Save(osol);
|
||||
}
|
||||
|
||||
VisItDataCollection visit_dc("Example16-Parallel", pmesh);
|
||||
VisItDataCollection visit_dc("Example16-Parallel", pmesh.get());
|
||||
visit_dc.RegisterField("temperature", &u_gf);
|
||||
if (visit)
|
||||
{
|
||||
@@ -293,52 +341,76 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
// 9. Define the ODE solver used for time integration.
|
||||
double t = 0.0;
|
||||
ODESolver *ode_solver = NULL;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKStepSolver *arkode = NULL;
|
||||
real_t t = 0.0;
|
||||
std::unique_ptr<ODESolver> ode_solver;
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
// MFEM explicit methods
|
||||
case 1: ode_solver = new ForwardEulerSolver; break;
|
||||
case 2: ode_solver = new RK2Solver(0.5); break; // midpoint method
|
||||
case 3: ode_solver = new RK3SSPSolver; break;
|
||||
case 4: ode_solver = new RK4Solver; break;
|
||||
case 1: ode_solver = std::make_unique<ForwardEulerSolver>(); break;
|
||||
case 2: ode_solver = std::make_unique<RK2Solver>(0.5); break; // midpoint method
|
||||
case 3: ode_solver = std::make_unique<RK3SSPSolver>(); break;
|
||||
case 4: ode_solver = std::make_unique<RK4Solver>(); break;
|
||||
// MFEM implicit L-stable methods
|
||||
case 5: ode_solver = new BackwardEulerSolver; break;
|
||||
case 6: ode_solver = new SDIRK23Solver(2); break;
|
||||
case 7: ode_solver = new SDIRK33Solver; break;
|
||||
case 5: ode_solver = std::make_unique<BackwardEulerSolver>(); break;
|
||||
case 6: ode_solver = std::make_unique<SDIRK23Solver>(2); break;
|
||||
case 7: ode_solver = std::make_unique<SDIRK33Solver>(); break;
|
||||
// CVODE
|
||||
case 8:
|
||||
cvode = new CVODESolver(MPI_COMM_WORLD, CV_ADAMS);
|
||||
cvode->Init(oper);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
case 9:
|
||||
cvode = new CVODESolver(MPI_COMM_WORLD, CV_BDF);
|
||||
{
|
||||
int cvode_solver_type;
|
||||
if (ode_solver_type == 8)
|
||||
{
|
||||
cvode_solver_type = CV_ADAMS;
|
||||
}
|
||||
else
|
||||
{
|
||||
cvode_solver_type = CV_BDF;
|
||||
}
|
||||
std::unique_ptr<CVODESolver> cvode(
|
||||
new CVODESolver(MPI_COMM_WORLD, cvode_solver_type));
|
||||
cvode->Init(oper);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
ode_solver = std::move(cvode);
|
||||
break;
|
||||
}
|
||||
// ARKODE
|
||||
case 10:
|
||||
case 11:
|
||||
arkode = new ARKStepSolver(MPI_COMM_WORLD, ARKStepSolver::EXPLICIT);
|
||||
case 12:
|
||||
case 13:
|
||||
case 14:
|
||||
case 15:
|
||||
{
|
||||
ARKStepSolver::Type arkode_solver_type;
|
||||
if (ode_solver_type == 12 || ode_solver_type == 15)
|
||||
{
|
||||
arkode_solver_type = ARKStepSolver::IMPLICIT;
|
||||
}
|
||||
else
|
||||
{
|
||||
arkode_solver_type = ARKStepSolver::EXPLICIT;
|
||||
}
|
||||
std::unique_ptr<ARKStepSolver> arkode(
|
||||
new ARKStepSolver(MPI_COMM_WORLD, arkode_solver_type));
|
||||
arkode->Init(oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 11)
|
||||
if (ode_solver_type == 11 || ode_solver_type == 14)
|
||||
{
|
||||
arkode->SetERKTableNum(ARKODE_FEHLBERG_13_7_8);
|
||||
}
|
||||
ode_solver = arkode; break;
|
||||
case 12:
|
||||
arkode = new ARKStepSolver(MPI_COMM_WORLD, ARKStepSolver::IMPLICIT);
|
||||
arkode->Init(oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
ode_solver = arkode; break;
|
||||
if (use_mass_solver)
|
||||
{
|
||||
arkode->UseMFEMMassLinearSolver(SUNFALSE);
|
||||
}
|
||||
ode_solver = std::move(arkode);
|
||||
break;
|
||||
}
|
||||
default:
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
return 3;
|
||||
}
|
||||
|
||||
// Initialize MFEM integrators, SUNDIALS integrators are initialized above
|
||||
@@ -346,12 +418,18 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Since we want to update the diffusion coefficient after every time step,
|
||||
// we need to use the "one-step" mode of the SUNDIALS solvers.
|
||||
if (cvode) { cvode->SetStepMode(CV_ONE_STEP); }
|
||||
if (arkode) { arkode->SetStepMode(ARK_ONE_STEP); }
|
||||
if (CVODESolver* cvode = dynamic_cast<CVODESolver*>(ode_solver.get()))
|
||||
{
|
||||
cvode->SetStepMode(CV_ONE_STEP);
|
||||
}
|
||||
else if (ARKStepSolver* arkode = dynamic_cast<ARKStepSolver*>(ode_solver.get()))
|
||||
{
|
||||
arkode->SetStepMode(ARK_ONE_STEP);
|
||||
}
|
||||
|
||||
// 10. Perform time-integration (looping over the time iterations, ti, with a
|
||||
// time-step dt).
|
||||
if (myid == 0)
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "Integrating the ODE ..." << endl;
|
||||
}
|
||||
@@ -361,7 +439,7 @@ int main(int argc, char *argv[])
|
||||
bool last_step = false;
|
||||
for (int ti = 1; !last_step; ti++)
|
||||
{
|
||||
double dt_real = min(dt, t_final - t);
|
||||
real_t dt_real = min(dt, t_final - t);
|
||||
|
||||
// Note that since we are using the "one-step" mode of the SUNDIALS
|
||||
// solvers, they will, generally, step over the final time and will not
|
||||
@@ -377,8 +455,14 @@ int main(int argc, char *argv[])
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "step " << ti << ", t = " << t << endl;
|
||||
if (cvode) { cvode->PrintInfo(); }
|
||||
if (arkode) { arkode->PrintInfo(); }
|
||||
if (CVODESolver* cvode = dynamic_cast<CVODESolver*>(ode_solver.get()))
|
||||
{
|
||||
cvode->PrintInfo();
|
||||
}
|
||||
else if (ARKStepSolver* arkode = dynamic_cast<ARKStepSolver*>(ode_solver.get()))
|
||||
{
|
||||
arkode->PrintInfo();
|
||||
}
|
||||
}
|
||||
|
||||
u_gf.SetFromTrueDofs(u);
|
||||
@@ -395,46 +479,38 @@ int main(int argc, char *argv[])
|
||||
visit_dc.Save();
|
||||
}
|
||||
}
|
||||
oper.SetParameters(u);
|
||||
oper.SetConductionTensor(u);
|
||||
}
|
||||
tic_toc.Stop();
|
||||
if (myid == 0)
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "Done, " << tic_toc.RealTime() << "s." << endl;
|
||||
}
|
||||
|
||||
// 11. Save the final solution in parallel. This output can be viewed later
|
||||
// using GLVis: "glvis -np <np> -m ex16-mesh -g ex16-final".
|
||||
{
|
||||
ostringstream sol_name;
|
||||
sol_name << "ex16-final." << setfill('0') << setw(6) << myid;
|
||||
ofstream osol(sol_name.str().c_str());
|
||||
osol.precision(precision);
|
||||
u_gf.Save(osol);
|
||||
}
|
||||
|
||||
// 12. Free the used memory.
|
||||
delete ode_solver;
|
||||
delete pmesh;
|
||||
u_gf.Save("ex16-final", precision);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
ConductionOperator::ConductionOperator(ParFiniteElementSpace &f, double al,
|
||||
double kap, const Vector &u)
|
||||
: TimeDependentOperator(f.GetTrueVSize(), 0.0), fespace(f), M(NULL), K(NULL),
|
||||
T(NULL),
|
||||
M_solver(f.GetComm()), T_solver(f.GetComm()), z(height)
|
||||
ConductionOperator::ConductionOperator(ParFiniteElementSpace &fes,
|
||||
const real_t alpha, const real_t kappa,
|
||||
const Vector &u,
|
||||
const Type &ode_expression_type)
|
||||
: TimeDependentOperator(fes.GetTrueVSize(), 0.0, ode_expression_type),
|
||||
fespace(fes), alpha(alpha), kappa(kappa), M(&fespace),
|
||||
M_solver(fes.GetComm()), T_solver(fes.GetComm()), z(height)
|
||||
{
|
||||
const double rel_tol = 1e-8;
|
||||
// specify a relative tolerance for all solves with MFEM integrators
|
||||
const real_t rel_tol = 1e-8;
|
||||
|
||||
M = new ParBilinearForm(&fespace);
|
||||
M->AddDomainIntegrator(new MassIntegrator());
|
||||
M->Assemble(0); // keep sparsity pattern of M and K the same
|
||||
M->FormSystemMatrix(ess_tdof_list, Mmat);
|
||||
M.AddDomainIntegrator(new MassIntegrator());
|
||||
M.Assemble(0); // keep zeros to keep sparsity pattern of M and K the same
|
||||
M.FormSystemMatrix(ess_tdof_list, Mmat);
|
||||
|
||||
M_solver.iterative_mode = false;
|
||||
M_solver.SetRelTol(rel_tol);
|
||||
M_solver.SetRelTol(rel_tol); // will be overwritten with SUNDIALS integrators
|
||||
M_solver.SetAbsTol(0.0);
|
||||
M_solver.SetMaxIter(100);
|
||||
M_solver.SetPrintLevel(0);
|
||||
@@ -442,97 +518,118 @@ ConductionOperator::ConductionOperator(ParFiniteElementSpace &f, double al,
|
||||
M_solver.SetPreconditioner(M_prec);
|
||||
M_solver.SetOperator(Mmat);
|
||||
|
||||
alpha = al;
|
||||
kappa = kap;
|
||||
|
||||
T_solver.iterative_mode = false;
|
||||
T_solver.SetRelTol(rel_tol);
|
||||
T_solver.SetRelTol(rel_tol); // will be overwritten with SUNDIALS integrators
|
||||
T_solver.SetAbsTol(0.0);
|
||||
T_solver.SetMaxIter(100);
|
||||
T_solver.SetPrintLevel(0);
|
||||
T_solver.SetPreconditioner(T_prec);
|
||||
|
||||
SetParameters(u);
|
||||
SetConductionTensor(u);
|
||||
}
|
||||
|
||||
void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
|
||||
{
|
||||
// Compute:
|
||||
// du_dt = M^{-1}*-K(u)
|
||||
// for du_dt
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg(); // z = -z
|
||||
M_solver.Mult(z, du_dt);
|
||||
}
|
||||
|
||||
void ConductionOperator::ImplicitSolve(const double dt,
|
||||
const Vector &u, Vector &du_dt)
|
||||
{
|
||||
// Solve the equation:
|
||||
// du_dt = M^{-1}*[-K(u + dt*du_dt)]
|
||||
// for du_dt
|
||||
if (T) { delete T; }
|
||||
T = Add(1.0, Mmat, dt, Kmat);
|
||||
T_solver.SetOperator(*T);
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg();
|
||||
T_solver.Mult(z, du_dt);
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNImplicitSetup(const Vector &x,
|
||||
const Vector &fx, int jok, int *jcur,
|
||||
double gamma)
|
||||
{
|
||||
// Setup the ODE Jacobian T = M + gamma K.
|
||||
if (T) { delete T; }
|
||||
T = Add(1.0, Mmat, gamma, Kmat);
|
||||
T_solver.SetOperator(*T);
|
||||
*jcur = 1;
|
||||
return (0);
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNImplicitSolve(const Vector &b, Vector &x, double tol)
|
||||
{
|
||||
// Solve the system A x = z => (M - gamma K) x = M b.
|
||||
Mmat.Mult(b, z);
|
||||
T_solver.Mult(z, x);
|
||||
return (0);
|
||||
}
|
||||
|
||||
void ConductionOperator::SetParameters(const Vector &u)
|
||||
void ConductionOperator::SetConductionTensor(const Vector &u)
|
||||
{
|
||||
// Compute K(u_n).
|
||||
ParGridFunction u_alpha_gf(&fespace);
|
||||
u_alpha_gf.SetFromTrueDofs(u);
|
||||
for (int i = 0; i < u_alpha_gf.Size(); i++)
|
||||
{
|
||||
u_alpha_gf(i) = kappa + alpha*u_alpha_gf(i);
|
||||
}
|
||||
|
||||
delete K;
|
||||
K = new ParBilinearForm(&fespace);
|
||||
|
||||
GridFunctionCoefficient u_coeff(&u_alpha_gf);
|
||||
|
||||
K = std::make_unique<ParBilinearForm>(&fespace);
|
||||
K->AddDomainIntegrator(new DiffusionIntegrator(u_coeff));
|
||||
K->Assemble(0); // keep sparsity pattern of M and K the same
|
||||
K->Assemble(0); // keep zeros to keep sparsity pattern of M and K the same
|
||||
K->FormSystemMatrix(ess_tdof_list, Kmat);
|
||||
}
|
||||
|
||||
ConductionOperator::~ConductionOperator()
|
||||
void ConductionOperator::ExplicitMult(const Vector &u, Vector &v) const
|
||||
{
|
||||
delete T;
|
||||
delete M;
|
||||
delete K;
|
||||
// Compute - K(u_n) u.
|
||||
Kmat.Mult(u, v);
|
||||
v.Neg();
|
||||
}
|
||||
|
||||
double InitialTemperature(const Vector &x)
|
||||
void ConductionOperator::Mult(const Vector &u, Vector &k) const
|
||||
{
|
||||
if (x.Norml2() < 0.5)
|
||||
// Compute - inv(M) K(u_n) u.
|
||||
ExplicitMult(u, z);
|
||||
M_solver.Mult(z, k);
|
||||
}
|
||||
|
||||
void ConductionOperator::ImplicitSolve(const real_t gam, const Vector &u,
|
||||
Vector &k)
|
||||
{
|
||||
// Solve for k in M k = - K(u_n) [u + gam*k].
|
||||
ExplicitMult(u, z);
|
||||
T = std::unique_ptr<HypreParMatrix>(Add(1.0, Mmat, gam, Kmat));
|
||||
T_solver.SetOperator(*T);
|
||||
T_solver.Mult(z, k);
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNImplicitSetup(const Vector &u, const Vector &fu,
|
||||
int jok, int *jcur, real_t gam)
|
||||
{
|
||||
// Compute T = M + gamma K(u_n).
|
||||
T = std::unique_ptr<HypreParMatrix>(Add(1.0, Mmat, gam, Kmat));
|
||||
T_solver.SetOperator(*T);
|
||||
*jcur = SUNTRUE; // this should eventually only be set true if K(u) is used
|
||||
return SUNLS_SUCCESS;
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNImplicitSolve(const Vector &r, Vector &dk,
|
||||
real_t tol)
|
||||
{
|
||||
// Solve the system [M + gamma K(u_n)] dk = - K(u_n) u - M k.
|
||||
// What value r is providing depends on the ODE expression form:
|
||||
// EXPLICIT form: r = -inv(M) K(u_n) u - k
|
||||
// IMPLICIT form: r = -K(u_n) u - M k
|
||||
T_solver.SetRelTol(tol);
|
||||
if (isExplicit())
|
||||
{
|
||||
return 2.0;
|
||||
Mmat.Mult(r, z);
|
||||
T_solver.Mult(z, dk);
|
||||
}
|
||||
else
|
||||
{
|
||||
return 1.0;
|
||||
T_solver.Mult(r, dk);
|
||||
}
|
||||
if (T_solver.GetConverged())
|
||||
{
|
||||
return SUNLS_SUCCESS;
|
||||
}
|
||||
else
|
||||
{
|
||||
return SUNLS_CONV_FAIL;
|
||||
}
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNMassSetup()
|
||||
{
|
||||
// Do nothing b/c mass solver was setup in constructor.
|
||||
return SUNLS_SUCCESS;
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNMassSolve(const Vector &b, Vector &x, real_t tol)
|
||||
{
|
||||
// Solve the system M x = b.
|
||||
M_solver.SetRelTol(tol);
|
||||
M_solver.Mult(b, x);
|
||||
if (M_solver.GetConverged())
|
||||
{
|
||||
return SUNLS_SUCCESS;
|
||||
}
|
||||
else
|
||||
{
|
||||
return SUNLS_CONV_FAIL;
|
||||
}
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNMassMult(const Vector &x, Vector &v)
|
||||
{
|
||||
// Compute M x.
|
||||
Mmat.Mult(x, v);
|
||||
return SUNLS_SUCCESS;
|
||||
}
|
||||
|
||||
@@ -1,7 +1,9 @@
|
||||
// MFEM Example 9
|
||||
// SUNDIALS Modification
|
||||
//
|
||||
// Compile with: make ex9
|
||||
// Compile with:
|
||||
// make ex9 (GNU make)
|
||||
// make sundials_ex9 (CMake)
|
||||
//
|
||||
// Sample runs:
|
||||
// ex9 -m ../../data/periodic-segment.mesh -p 0 -r 2 -s 7 -dt 0.005
|
||||
|
||||
@@ -1,7 +1,9 @@
|
||||
// MFEM Example 9 - Parallel Version
|
||||
// SUNDIALS Modification
|
||||
//
|
||||
// Compile with: make ex9p
|
||||
// Compile with:
|
||||
// make ex9p (GNU make)
|
||||
// make sundials_ex9p (CMake)
|
||||
//
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex9p -m ../../data/periodic-segment.mesh -p 1 -rp 1 -s 7 -dt 0.0025
|
||||
|
||||
@@ -100,6 +100,12 @@ ex10-test-seq: ex10
|
||||
@$(call mfem-test,$<,, $(SERIAL_NAME),$(EX10_ARGS))
|
||||
ex10p-test-par: ex10p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(PARALLEL_NAME),$(EX10P_ARGS))
|
||||
# Example 16: test ARKODE with implicit time stepping using mass form
|
||||
EX16_COMMON_ARGS := -s 15
|
||||
ex16-test-seq: ex16
|
||||
@$(call mfem-test,$<,, $(SERIAL_NAME),$(EX16_COMMON_ARGS))
|
||||
ex16p-test-par: ex16p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(PARALLEL_NAME),$(EX16_COMMON_ARGS))
|
||||
|
||||
# Testing: "test" target and mfem-test* variables are defined in config/test.mk
|
||||
|
||||
|
||||
+3
-3
@@ -112,8 +112,6 @@ set(SRCS
|
||||
qinterp/eval_by_vdim.cpp
|
||||
qinterp/grad_by_nodes.cpp
|
||||
qinterp/grad_by_vdim.cpp
|
||||
qinterp/grad_phys_by_nodes.cpp
|
||||
qinterp/grad_phys_by_vdim.cpp
|
||||
qspace.cpp
|
||||
quadinterpolator.cpp
|
||||
quadinterpolator_face.cpp
|
||||
@@ -192,6 +190,9 @@ set(HDRS
|
||||
hybridization.hpp
|
||||
intrules.hpp
|
||||
intrules_cut.hpp
|
||||
kernel_dispatch.hpp
|
||||
kernel_reporter.hpp
|
||||
kernels.hpp
|
||||
ceed/interface/basis.hpp
|
||||
ceed/interface/integrator.hpp
|
||||
ceed/interface/interface.hpp
|
||||
@@ -223,7 +224,6 @@ set(HDRS
|
||||
nonlinearform_ext.hpp
|
||||
nonlininteg.hpp
|
||||
qfunction.hpp
|
||||
qinterp/dispatch.hpp
|
||||
qinterp/eval.hpp
|
||||
qinterp/grad.hpp
|
||||
qspace.hpp
|
||||
|
||||
@@ -19,6 +19,8 @@
|
||||
#include "qfunction.hpp"
|
||||
#include <memory>
|
||||
|
||||
#include "kernel_dispatch.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
@@ -2127,6 +2129,22 @@ public:
|
||||
can be a scalar or a matrix coefficient. */
|
||||
class DiffusionIntegrator: public BilinearFormIntegrator
|
||||
{
|
||||
public:
|
||||
|
||||
using ApplyKernelType = void(*)(const int, const bool, const Array<real_t>&,
|
||||
const Array<real_t>&, const Array<real_t>&,
|
||||
const Array<real_t>&,
|
||||
const Vector&, const Vector&,
|
||||
Vector&, const int, const int);
|
||||
|
||||
using DiagonalKernelType = void(*)(const int, const bool, const Array<real_t>&,
|
||||
const Array<real_t>&, const Vector&, Vector&,
|
||||
const int, const int);
|
||||
|
||||
MFEM_REGISTER_KERNELS(ApplyPAKernels, ApplyKernelType, (int, int, int));
|
||||
MFEM_REGISTER_KERNELS(DiagonalPAKernels, DiagonalKernelType, (int, int, int));
|
||||
static struct Kernels { Kernels(); } kernels;
|
||||
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
VectorCoefficient *VQ;
|
||||
@@ -2287,6 +2305,13 @@ public:
|
||||
bool SupportsCeed() const { return DeviceCanUseCeed(); }
|
||||
|
||||
Coefficient *GetCoefficient() const { return Q; }
|
||||
|
||||
template <int DIM, int D1D, int Q1D>
|
||||
static void AddSpecialization()
|
||||
{
|
||||
ApplyPAKernels::Specialization<DIM,D1D,Q1D>::Add();
|
||||
DiagonalPAKernels::Specialization<DIM,D1D,Q1D>::Add();
|
||||
}
|
||||
};
|
||||
|
||||
/** Class for local mass matrix assembling $a(u,v) := (Q u, v)$ */
|
||||
@@ -2306,6 +2331,20 @@ protected:
|
||||
const FaceGeometricFactors *face_geom; ///< Not owned
|
||||
int dim, ne, nq, dofs1D, quad1D;
|
||||
|
||||
public:
|
||||
|
||||
using ApplyKernelType = void(*)(const int, const Array<real_t>&,
|
||||
const Array<real_t>&, const Vector&,
|
||||
const Vector&, Vector&, const int, const int);
|
||||
|
||||
using DiagonalKernelType = void(*)(const int, const Array<real_t>&,
|
||||
const Vector&, Vector&, const int,
|
||||
const int);
|
||||
|
||||
MFEM_REGISTER_KERNELS(ApplyPAKernels, ApplyKernelType, (int, int, int));
|
||||
MFEM_REGISTER_KERNELS(DiagonalPAKernels, DiagonalKernelType, (int, int, int));
|
||||
static struct Kernels { Kernels(); } kernels;
|
||||
|
||||
public:
|
||||
MassIntegrator(const IntegrationRule *ir = NULL)
|
||||
: BilinearFormIntegrator(ir), Q(NULL), maps(NULL), geom(NULL) { }
|
||||
@@ -2351,6 +2390,13 @@ public:
|
||||
bool SupportsCeed() const { return DeviceCanUseCeed(); }
|
||||
|
||||
const Coefficient *GetCoefficient() const { return Q; }
|
||||
|
||||
template <int DIM, int D1D, int Q1D>
|
||||
static void AddSpecialization()
|
||||
{
|
||||
ApplyPAKernels::Specialization<DIM,D1D,Q1D>::Add();
|
||||
DiagonalPAKernels::Specialization<DIM,D1D,Q1D>::Add();
|
||||
}
|
||||
};
|
||||
|
||||
/** Mass integrator $(u, v)$ restricted to the boundary of a domain */
|
||||
|
||||
+17
-2
@@ -52,6 +52,15 @@ protected:
|
||||
const DenseMatrix &EvalTransAdjugateJ();
|
||||
const DenseMatrix &EvalInverseJ();
|
||||
|
||||
/// @name Tolerance used for point comparisons
|
||||
///@{
|
||||
#ifdef MFEM_USE_DOUBLE
|
||||
static constexpr real_t tol_0 = 1e-15;
|
||||
#elif defined(MFEM_USE_SINGLE)
|
||||
static constexpr real_t tol_0 = 1e-7;
|
||||
#endif
|
||||
///@}
|
||||
|
||||
public:
|
||||
|
||||
/** This enumeration declares the values stored in
|
||||
@@ -176,7 +185,7 @@ public:
|
||||
returned. This method is not 100 percent reliable for non-linear
|
||||
transformations. */
|
||||
virtual int TransformBack(const Vector &pt, IntegrationPoint &ip,
|
||||
const real_t phys_tol = 1e-15) = 0;
|
||||
const real_t phys_tol = tol_0) = 0;
|
||||
|
||||
virtual ~ElementTransformation() { }
|
||||
};
|
||||
@@ -281,9 +290,15 @@ public:
|
||||
rel_qpts_order(-1),
|
||||
solver_type(NewtonElementProject),
|
||||
max_iter(16),
|
||||
#ifdef MFEM_USE_DOUBLE
|
||||
ref_tol(1e-15),
|
||||
phys_rtol(1e-15),
|
||||
ip_tol(1e-8),
|
||||
#elif defined(MFEM_USE_SINGLE)
|
||||
ref_tol(1e-7),
|
||||
phys_rtol(1e-7),
|
||||
ip_tol(1e-4),
|
||||
#endif
|
||||
print_level(-1)
|
||||
{ }
|
||||
|
||||
@@ -449,7 +464,7 @@ public:
|
||||
returned. This method is not 100 percent reliable for non-linear
|
||||
transformations. */
|
||||
virtual int TransformBack(const Vector & v, IntegrationPoint & ip,
|
||||
const real_t phys_rel_tol = 1e-15)
|
||||
const real_t phys_rel_tol = tol_0)
|
||||
{
|
||||
InverseElementTransformation inv_tr(this);
|
||||
inv_tr.SetPhysicalRelTol(phys_rel_tol);
|
||||
|
||||
+26
-25
@@ -394,7 +394,32 @@ public:
|
||||
/// Get a const reference to the nodes of the element
|
||||
const IntegrationRule & GetNodes() const { return Nodes; }
|
||||
|
||||
// virtual functions for finite elements on vector spaces
|
||||
/** @brief Evaluate the Hessians of all shape functions of a scalar finite
|
||||
element in reference space at the given point @a ip. */
|
||||
/** Each row of the result DenseMatrix @a Hessian contains upper triangular
|
||||
part of the Hessian of one shape function.
|
||||
The order in 2D is {u_xx, u_xy, u_yy}.
|
||||
The size (#dof x (#dim (#dim+1)/2) of @a Hessian must be set in advance.*/
|
||||
virtual void CalcHessian(const IntegrationPoint &ip,
|
||||
DenseMatrix &Hessian) const;
|
||||
|
||||
/** @brief Evaluate the Hessian of all shape functions of a scalar finite
|
||||
element in physical space at the given point @a ip. */
|
||||
/** The size (#dof, #dim*(#dim+1)/2) of @a Hessian must be set in advance. */
|
||||
void CalcPhysHessian(ElementTransformation &Trans,
|
||||
DenseMatrix& Hessian) const;
|
||||
|
||||
/** @brief Evaluate the Laplacian of all shape functions of a scalar finite
|
||||
element in physical space at the given point @a ip. */
|
||||
/** The size (#dof) of @a Laplacian must be set in advance. */
|
||||
void CalcPhysLaplacian(ElementTransformation &Trans,
|
||||
Vector& Laplacian) const;
|
||||
|
||||
/** @brief Evaluate the Laplacian of all shape functions of a scalar finite
|
||||
element in physical space at the given point @a ip. */
|
||||
/** The size (#dof) of @a Laplacian must be set in advance. */
|
||||
void CalcPhysLinLaplacian(ElementTransformation &Trans,
|
||||
Vector& Laplacian) const;
|
||||
|
||||
/** @brief Evaluate the values of all shape functions of a *vector* finite
|
||||
element in reference space at the given point @a ip. */
|
||||
@@ -454,30 +479,6 @@ public:
|
||||
*/
|
||||
virtual void GetFaceDofs(int face, int **dofs, int *ndofs) const;
|
||||
|
||||
/** @brief Evaluate the Hessians of all shape functions of a scalar finite
|
||||
element in reference space at the given point @a ip. */
|
||||
/** Each row of the result DenseMatrix @a Hessian contains upper triangular
|
||||
part of the Hessian of one shape function.
|
||||
The order in 2D is {u_xx, u_xy, u_yy}.
|
||||
The size (#dof x (#dim (#dim+1)/2) of @a Hessian must be set in advance.*/
|
||||
virtual void CalcHessian(const IntegrationPoint &ip,
|
||||
DenseMatrix &Hessian) const;
|
||||
|
||||
/** @brief Evaluate the Hessian of all shape functions of a scalar finite
|
||||
element in reference space at the given point @a ip. */
|
||||
/** The size (#dof, #dim*(#dim+1)/2) of @a Hessian must be set in advance. */
|
||||
virtual void CalcPhysHessian(ElementTransformation &Trans,
|
||||
DenseMatrix& Hessian) const;
|
||||
|
||||
/** @brief Evaluate the Laplacian of all shape functions of a scalar finite
|
||||
element in reference space at the given point @a ip. */
|
||||
/** The size (#dof) of @a Laplacian must be set in advance. */
|
||||
virtual void CalcPhysLaplacian(ElementTransformation &Trans,
|
||||
Vector& Laplacian) const;
|
||||
|
||||
virtual void CalcPhysLinLaplacian(ElementTransformation &Trans,
|
||||
Vector& Laplacian) const;
|
||||
|
||||
/** @brief Return the local interpolation matrix @a I (Dof x Dof) where the
|
||||
fine element is the image of the base geometry under the given
|
||||
transformation. */
|
||||
|
||||
+614
-1
@@ -398,8 +398,621 @@ void NURBS3DFiniteElement::CalcHessian (const IntegrationPoint &ip,
|
||||
hessian(o,5) = hessian(o,5)*sum
|
||||
- 2*du(o,1)*sum*dsum[1]
|
||||
+ u[o]*sum*(2*dsum[1]*dsum[1] - d2sum[5]);
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void NURBS_HDiv2DFiniteElement::SetOrder() const
|
||||
{
|
||||
orders[0] = kv[0]->GetOrder();
|
||||
orders[1] = kv[1]->GetOrder();
|
||||
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
|
||||
kv1[0] = kv[0]->DegreeElevate(1);
|
||||
kv1[1] = kv[1]->DegreeElevate(1);
|
||||
|
||||
shape_x.SetSize(orders[0]+1);
|
||||
shape_y.SetSize(orders[1]+1);
|
||||
|
||||
dshape_x.SetSize(orders[0]+1);
|
||||
dshape_y.SetSize(orders[1]+1);
|
||||
|
||||
d2shape_x.SetSize(orders[0]+1);
|
||||
d2shape_y.SetSize(orders[1]+1);
|
||||
|
||||
shape1_x.SetSize(orders[0]+2);
|
||||
shape1_y.SetSize(orders[1]+2);
|
||||
|
||||
dshape1_x.SetSize(orders[0]+2);
|
||||
dshape1_y.SetSize(orders[1]+2);
|
||||
|
||||
d2shape1_x.SetSize(orders[0]+2);
|
||||
d2shape1_y.SetSize(orders[1]+2);
|
||||
|
||||
order = max(orders[0]+1, orders[1]+1);
|
||||
dof = (orders[0] + 2)*(orders[1] + 1)
|
||||
+ (orders[1] + 1)*(orders[1] + 2);
|
||||
u.SetSize(dof);
|
||||
du.SetSize(dof);
|
||||
weights.SetSize(dof);
|
||||
}
|
||||
|
||||
void NURBS_HDiv2DFiniteElement::CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
kv[0]->CalcShape(shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape(shape_y, ijk[1], ip.y);
|
||||
|
||||
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
|
||||
|
||||
int o = 0;
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy = shape_y(j);
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
shape(o,0) = shape1_x(i)*sy;
|
||||
shape(o,1) = 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1 = shape1_y(j);
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
shape(o,0) = 0.0;
|
||||
shape(o,1) = shape_x(i)*sy1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void NURBS_HDiv2DFiniteElement::CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
CalcVShape(Trans.GetIntPoint(), shape);
|
||||
const DenseMatrix & J = Trans.Jacobian();
|
||||
MFEM_ASSERT(J.Width() == 2 && J.Height() == 2,
|
||||
"NURBS_HDiv2DFiniteElement cannot be embedded in "
|
||||
"3 dimensional spaces");
|
||||
for (int i=0; i<dof; i++)
|
||||
{
|
||||
real_t sx = shape(i, 0);
|
||||
real_t sy = shape(i, 1);
|
||||
shape(i, 0) = sx * J(0, 0) + sy * J(0, 1);
|
||||
shape(i, 1) = sx * J(1, 0) + sy * J(1, 1);
|
||||
}
|
||||
shape *= (1.0 / Trans.Weight());
|
||||
}
|
||||
|
||||
void NURBS_HDiv2DFiniteElement::CalcDivShape(const IntegrationPoint &ip,
|
||||
Vector &divshape) const
|
||||
{
|
||||
kv[0]->CalcShape ( shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape ( shape_y, ijk[1], ip.y);
|
||||
|
||||
kv1[0]->CalcDShape(dshape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcDShape(dshape1_y, ijk[1], ip.y);
|
||||
|
||||
int o = 0;
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy = shape_y(j);
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
divshape(o) = dshape1_x(i)*sy;
|
||||
}
|
||||
}
|
||||
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t dsy1 = dshape1_y(j);
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
divshape(o) = shape_x(i)*dsy1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
NURBS_HDiv2DFiniteElement::~NURBS_HDiv2DFiniteElement()
|
||||
{
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
}
|
||||
|
||||
|
||||
void NURBS_HDiv3DFiniteElement::SetOrder() const
|
||||
{
|
||||
orders[0] = kv[0]->GetOrder();
|
||||
orders[1] = kv[1]->GetOrder();
|
||||
orders[2] = kv[2]->GetOrder();
|
||||
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
if (kv1[2]) { delete kv1[2]; }
|
||||
|
||||
kv1[0] = kv[0]->DegreeElevate(1);
|
||||
kv1[1] = kv[1]->DegreeElevate(1);
|
||||
kv1[2] = kv[2]->DegreeElevate(1);
|
||||
|
||||
shape_x.SetSize(orders[0]+1);
|
||||
shape_y.SetSize(orders[1]+1);
|
||||
shape_z.SetSize(orders[2]+1);
|
||||
|
||||
dshape_x.SetSize(orders[0]+1);
|
||||
dshape_y.SetSize(orders[1]+1);
|
||||
dshape_z.SetSize(orders[2]+1);
|
||||
|
||||
d2shape_x.SetSize(orders[0]+1);
|
||||
d2shape_y.SetSize(orders[1]+1);
|
||||
d2shape_z.SetSize(orders[2]+1);
|
||||
|
||||
shape1_x.SetSize(orders[0]+2);
|
||||
shape1_y.SetSize(orders[1]+2);
|
||||
shape1_z.SetSize(orders[2]+2);
|
||||
|
||||
dshape1_x.SetSize(orders[0]+2);
|
||||
dshape1_y.SetSize(orders[1]+2);
|
||||
dshape1_z.SetSize(orders[2]+2);
|
||||
|
||||
d2shape1_x.SetSize(orders[0]+2);
|
||||
d2shape1_y.SetSize(orders[1]+2);
|
||||
d2shape1_z.SetSize(orders[2]+2);
|
||||
|
||||
order = max(orders[0]+1, max( orders[1]+1, orders[2]+1));
|
||||
dof = (orders[0] + 2)*(orders[1] + 1)*(orders[2] + 1) +
|
||||
(orders[0] + 1)*(orders[1] + 2)*(orders[2] + 1) +
|
||||
(orders[0] + 1)*(orders[1] + 1)*(orders[2] + 2);
|
||||
u.SetSize(dof);
|
||||
du.SetSize(dof);
|
||||
weights.SetSize(dof);
|
||||
}
|
||||
|
||||
void NURBS_HDiv3DFiniteElement::CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
kv[0]->CalcShape(shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape(shape_y, ijk[1], ip.y);
|
||||
kv[2]->CalcShape(shape_z, ijk[2], ip.z);
|
||||
|
||||
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
|
||||
kv1[2]->CalcShape(shape1_z, ijk[2], ip.z);
|
||||
|
||||
shape = 0.0;
|
||||
int o = 0;
|
||||
for (int k = 0; k <= orders[2]; k++)
|
||||
{
|
||||
const real_t sz = shape_z(k);
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy_sz = shape_y(j)*sz;
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
shape(o,0) = shape1_x(i)*sy_sz;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]; k++)
|
||||
{
|
||||
const real_t sz = shape_z(k);
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1_sz = shape1_y(j)*sz;
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
shape(o,1) = shape_x(i)*sy1_sz;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]+1; k++)
|
||||
{
|
||||
const real_t sz1 = shape1_z(k);
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy_sz1 = shape_y(j)*sz1;
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
shape(o,2) = shape_x(i)*sy_sz1;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void NURBS_HDiv3DFiniteElement::CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
CalcVShape(Trans.GetIntPoint(), shape);
|
||||
const DenseMatrix & J = Trans.Jacobian();
|
||||
MFEM_ASSERT(J.Width() == 3 && J.Height() == 3,
|
||||
"RT_R2D_FiniteElement cannot be embedded in "
|
||||
"3 dimensional spaces");
|
||||
for (int i=0; i<dof; i++)
|
||||
{
|
||||
real_t sx = shape(i, 0);
|
||||
real_t sy = shape(i, 1);
|
||||
real_t sz = shape(i, 2);
|
||||
shape(i, 0) = sx * J(0, 0) + sy * J(0, 1) + sz * J(0, 2);
|
||||
shape(i, 1) = sx * J(1, 0) + sy * J(1, 1) + sz * J(1, 2);
|
||||
shape(i, 2) = sx * J(2, 0) + sy * J(2, 1) + sz * J(2, 2);
|
||||
}
|
||||
shape *= (1.0 / Trans.Weight());
|
||||
}
|
||||
|
||||
void NURBS_HDiv3DFiniteElement::CalcDivShape(const IntegrationPoint &ip,
|
||||
Vector &divshape) const
|
||||
{
|
||||
kv[0]->CalcShape ( shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape ( shape_y, ijk[1], ip.y);
|
||||
kv[2]->CalcShape ( shape_z, ijk[2], ip.z);
|
||||
|
||||
kv1[0]->CalcDShape(dshape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcDShape(dshape1_y, ijk[1], ip.y);
|
||||
kv1[2]->CalcDShape(dshape1_z, ijk[2], ip.z);
|
||||
|
||||
int o = 0;
|
||||
for (int k = 0; k <= orders[2]; k++)
|
||||
{
|
||||
const real_t sz = shape_z(k);
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy_sz = shape_y(j)*sz;
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
divshape(o) = dshape1_x(i)*sy_sz;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]; k++)
|
||||
{
|
||||
const real_t sz = shape_z(k);
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t dy1_sz = dshape1_y(j)*sz;
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
divshape(o) = shape_x(i)*dy1_sz;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]+1; k++)
|
||||
{
|
||||
const real_t dz1 = dshape1_z(k);
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy_dz1 = shape_y(j)*dz1;
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
divshape(o) = shape_x(i)*sy_dz1;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
NURBS_HDiv3DFiniteElement::~NURBS_HDiv3DFiniteElement()
|
||||
{
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
if (kv1[2]) { delete kv1[2]; }
|
||||
}
|
||||
|
||||
void NURBS_HCurl2DFiniteElement::SetOrder() const
|
||||
{
|
||||
orders[0] = kv[0]->GetOrder();
|
||||
orders[1] = kv[1]->GetOrder();
|
||||
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
|
||||
kv1[0] = kv[0]->DegreeElevate(1);
|
||||
kv1[1] = kv[1]->DegreeElevate(1);
|
||||
|
||||
shape_x.SetSize(orders[0]+1);
|
||||
shape_y.SetSize(orders[1]+1);
|
||||
|
||||
dshape_x.SetSize(orders[0]+1);
|
||||
dshape_y.SetSize(orders[1]+1);
|
||||
|
||||
d2shape_x.SetSize(orders[0]+1);
|
||||
d2shape_y.SetSize(orders[1]+1);
|
||||
|
||||
shape1_x.SetSize(orders[0]+2);
|
||||
shape1_y.SetSize(orders[1]+2);
|
||||
|
||||
dshape1_x.SetSize(orders[0]+2);
|
||||
dshape1_y.SetSize(orders[1]+2);
|
||||
|
||||
d2shape1_x.SetSize(orders[0]+2);
|
||||
d2shape1_y.SetSize(orders[1]+2);
|
||||
|
||||
order = max(orders[0]+1, orders[1]+1);
|
||||
dof = (orders[0] + 1)*(orders[1] + 2)
|
||||
+ (orders[1] + 2)*(orders[1] + 1);
|
||||
u.SetSize(dof);
|
||||
du.SetSize(dof);
|
||||
weights.SetSize(dof);
|
||||
}
|
||||
|
||||
void NURBS_HCurl2DFiniteElement::CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
kv[0]->CalcShape(shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape(shape_y, ijk[1], ip.y);
|
||||
|
||||
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
|
||||
|
||||
int o = 0;
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1 = shape1_y(j);
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
shape(o,0) = shape_x(i)*sy1;
|
||||
shape(o,1) = 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy = shape_y(j);
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
shape(o,0) = 0.0;
|
||||
shape(o,1) = shape1_x(i)*sy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void NURBS_HCurl2DFiniteElement::CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
CalcVShape(Trans.GetIntPoint(), shape);
|
||||
const DenseMatrix & JI = Trans.InverseJacobian();
|
||||
MFEM_ASSERT(JI.Width() == 2 && JI.Height() == 2,
|
||||
"NURBS_HCurl2DFiniteElement cannot be embedded in "
|
||||
"3 dimensional spaces");
|
||||
for (int i=0; i<dof; i++)
|
||||
{
|
||||
real_t sx = shape(i, 0);
|
||||
real_t sy = shape(i, 1);
|
||||
shape(i, 0) = sx * JI(0, 0) + sy * JI(1, 0);
|
||||
shape(i, 1) = sx * JI(0, 1) + sy * JI(1, 1);
|
||||
}
|
||||
}
|
||||
|
||||
void NURBS_HCurl2DFiniteElement::CalcCurlShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &curl_shape) const
|
||||
{
|
||||
kv[0]->CalcShape ( shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape ( shape_y, ijk[1], ip.y);
|
||||
|
||||
kv1[0]->CalcDShape(dshape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcDShape(dshape1_y, ijk[1], ip.y);
|
||||
|
||||
int o = 0;
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t dsy1 = dshape1_y(j);
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
curl_shape(o,0) = -shape_x(i)*dsy1;
|
||||
}
|
||||
}
|
||||
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy = shape_y(j);
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
curl_shape(o,0) = dshape1_x(i)*sy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
NURBS_HCurl2DFiniteElement::~NURBS_HCurl2DFiniteElement()
|
||||
{
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
}
|
||||
|
||||
|
||||
void NURBS_HCurl3DFiniteElement::SetOrder() const
|
||||
{
|
||||
orders[0] = kv[0]->GetOrder();
|
||||
orders[1] = kv[1]->GetOrder();
|
||||
orders[2] = kv[2]->GetOrder();
|
||||
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
if (kv1[2]) { delete kv1[2]; }
|
||||
|
||||
kv1[0] = kv[0]->DegreeElevate(1);
|
||||
kv1[1] = kv[1]->DegreeElevate(1);
|
||||
kv1[2] = kv[2]->DegreeElevate(1);
|
||||
|
||||
shape_x.SetSize(orders[0]+1);
|
||||
shape_y.SetSize(orders[1]+1);
|
||||
shape_z.SetSize(orders[2]+1);
|
||||
|
||||
dshape_x.SetSize(orders[0]+1);
|
||||
dshape_y.SetSize(orders[1]+1);
|
||||
dshape_z.SetSize(orders[2]+1);
|
||||
|
||||
d2shape_x.SetSize(orders[0]+1);
|
||||
d2shape_y.SetSize(orders[1]+1);
|
||||
d2shape_z.SetSize(orders[2]+1);
|
||||
|
||||
shape1_x.SetSize(orders[0]+2);
|
||||
shape1_y.SetSize(orders[1]+2);
|
||||
shape1_z.SetSize(orders[2]+2);
|
||||
|
||||
dshape1_x.SetSize(orders[0]+2);
|
||||
dshape1_y.SetSize(orders[1]+2);
|
||||
dshape1_z.SetSize(orders[2]+2);
|
||||
|
||||
d2shape1_x.SetSize(orders[0]+2);
|
||||
d2shape1_y.SetSize(orders[1]+2);
|
||||
d2shape1_z.SetSize(orders[2]+2);
|
||||
|
||||
order = max(orders[0]+1, max( orders[1]+1, orders[2]+1));
|
||||
dof = (orders[0] + 1)*(orders[1] + 2)*(orders[2] + 2) +
|
||||
(orders[0] + 2)*(orders[1] + 1)*(orders[2] + 2) +
|
||||
(orders[0] + 2)*(orders[1] + 2)*(orders[2] + 1);
|
||||
u.SetSize(dof);
|
||||
du.SetSize(dof);
|
||||
weights.SetSize(dof);
|
||||
}
|
||||
|
||||
void NURBS_HCurl3DFiniteElement::CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
kv[0]->CalcShape(shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape(shape_y, ijk[1], ip.y);
|
||||
kv[2]->CalcShape(shape_z, ijk[2], ip.z);
|
||||
|
||||
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
|
||||
kv1[2]->CalcShape(shape1_z, ijk[2], ip.z);
|
||||
|
||||
shape = 0.0;
|
||||
int o = 0;
|
||||
for (int k = 0; k <= orders[2]+1; k++)
|
||||
{
|
||||
const real_t sz1 = shape1_z(k);
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1_sz1 = shape1_y(j)*sz1;
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
shape(o,0) = shape_x(i)*sy1_sz1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]+1; k++)
|
||||
{
|
||||
const real_t sz1 = shape1_z(k);
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy_sz1 = shape_y(j)*sz1;
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
shape(o,1) = shape1_x(i)*sy_sz1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]; k++)
|
||||
{
|
||||
const real_t sz = shape_z(k);
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1_sz = shape1_y(j)*sz;
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
shape(o,2) = shape1_x(i)*sy1_sz;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void NURBS_HCurl3DFiniteElement::CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
CalcVShape(Trans.GetIntPoint(), shape);
|
||||
const DenseMatrix & JI = Trans.InverseJacobian();
|
||||
MFEM_ASSERT(JI.Width() == 3 && JI.Height() == 3,
|
||||
"NURBS_HCurl3DFiniteElement must be in a"
|
||||
"3 dimensional spaces");
|
||||
for (int i=0; i<dof; i++)
|
||||
{
|
||||
real_t sx = shape(i, 0);
|
||||
real_t sy = shape(i, 1);
|
||||
real_t sz = shape(i, 2);
|
||||
shape(i, 0) = sx * JI(0, 0) + sy * JI(1, 0) + sz * JI(2, 0);
|
||||
shape(i, 1) = sx * JI(0, 1) + sy * JI(1, 1) + sz * JI(2, 1);
|
||||
shape(i, 2) = sx * JI(0, 2) + sy * JI(1, 2) + sz * JI(2, 2);
|
||||
}
|
||||
}
|
||||
|
||||
void NURBS_HCurl3DFiniteElement::CalcCurlShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &curl_shape) const
|
||||
{
|
||||
kv[0]->CalcShape ( shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape ( shape_y, ijk[1], ip.y);
|
||||
kv[2]->CalcShape ( shape_z, ijk[2], ip.z);
|
||||
|
||||
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
|
||||
kv1[2]->CalcShape(shape1_z, ijk[2], ip.z);
|
||||
|
||||
kv1[0]->CalcDShape(dshape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcDShape(dshape1_y, ijk[1], ip.y);
|
||||
kv1[2]->CalcDShape(dshape1_z, ijk[2], ip.z);
|
||||
|
||||
int o = 0;
|
||||
for (int k = 0; k <= orders[2]+1; k++)
|
||||
{
|
||||
const real_t sz1 = shape1_z(k), dsz1 = dshape1_z(k);
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1_dsz1 = shape1_y(j)*dsz1,
|
||||
dsy1_sz1 = dshape1_y(j)*sz1;
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
curl_shape(o,0) = 0.0;
|
||||
curl_shape(o,1) = shape_x(i)*sy1_dsz1;
|
||||
curl_shape(o,2) = -shape_x(i)*dsy1_sz1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]+1; k++)
|
||||
{
|
||||
const real_t sz1 = shape1_z(k), dsz1 = dshape1_z(k);
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy_dsz1 = shape_y(j)*dsz1,
|
||||
sy_sz1 = shape_y(j)*sz1;
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
curl_shape(o,0) = -shape1_x(i)*sy_dsz1;
|
||||
curl_shape(o,1) = 0.0;
|
||||
curl_shape(o,2) = dshape1_x(i)*sy_sz1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]; k++)
|
||||
{
|
||||
const real_t sz = shape_z(k);
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1_sz = shape1_y(j)*sz,
|
||||
dsy1_sz = dshape1_y(j)*sz;
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
curl_shape(o,0) = shape1_x(i)*dsy1_sz;
|
||||
curl_shape(o,1) = -dshape1_x(i)*sy1_sz;
|
||||
curl_shape(o,2) = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
NURBS_HCurl3DFiniteElement::~NURBS_HCurl3DFiniteElement()
|
||||
{
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
if (kv1[2]) { delete kv1[2]; }
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+380
-23
@@ -20,7 +20,7 @@ namespace mfem
|
||||
class KnotVector;
|
||||
|
||||
/// An arbitrary order and dimension NURBS element
|
||||
class NURBSFiniteElement : public ScalarFiniteElement
|
||||
class NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Array <const KnotVector*> kv;
|
||||
@@ -30,31 +30,34 @@ protected:
|
||||
|
||||
public:
|
||||
/** @brief Construct NURBSFiniteElement with given
|
||||
@param D Reference space dimension
|
||||
@param G Geometry type (of type Geometry::Type)
|
||||
@param Do Number of degrees of freedom in the FiniteElement
|
||||
@param O Order/degree of the FiniteElement
|
||||
@param F FunctionSpace type of the FiniteElement
|
||||
@param dim Reference space dimension
|
||||
*/
|
||||
NURBSFiniteElement(int D, Geometry::Type G, int Do, int O, int F)
|
||||
: ScalarFiniteElement(D, G, Do, O, F)
|
||||
NURBSFiniteElement(int dim)
|
||||
{
|
||||
ijk = NULL;
|
||||
patch = elem = -1;
|
||||
kv.SetSize(dim);
|
||||
weights.SetSize(dof);
|
||||
weights = 1.0;
|
||||
}
|
||||
|
||||
/// Resets the patch and element data stored in the element
|
||||
void Reset () const { patch = elem = -1; }
|
||||
/// Set which IJK in patch should be evaluated
|
||||
void SetIJK (const int *IJK) const { ijk = IJK; }
|
||||
/// Get which patch is currently considered
|
||||
int GetPatch () const { return patch; }
|
||||
/// Set which patch should be evaluated
|
||||
void SetPatch (int p) const { patch = p; }
|
||||
/// Set which elemenet should be evaluated
|
||||
int GetElement () const { return elem; }
|
||||
/// Get which element is currently considered
|
||||
void SetElement (int e) const { elem = e; }
|
||||
/// Get the KnotVectors
|
||||
Array <const KnotVector*> &KnotVectors() const { return kv; }
|
||||
/// Get the Weights
|
||||
Vector &Weights () const { return weights; }
|
||||
/// Update the NURBSFiniteElement according to the currently set knot vectors
|
||||
/// Update the polynomial order according to the currently set knotvectors
|
||||
/// Resizes all internal data members to have the correct size
|
||||
/// related to the polynomial order
|
||||
virtual void SetOrder () const { }
|
||||
|
||||
/// Returns the indices (i,j) in 2D or (i,j,k) in 3D of this element in the
|
||||
@@ -64,7 +67,8 @@ public:
|
||||
|
||||
|
||||
/// An arbitrary order 1D NURBS element on a segment
|
||||
class NURBS1DFiniteElement : public NURBSFiniteElement
|
||||
class NURBS1DFiniteElement : public ScalarFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector shape_x;
|
||||
@@ -72,7 +76,8 @@ protected:
|
||||
public:
|
||||
/// Construct the NURBS1DFiniteElement of order @a p
|
||||
NURBS1DFiniteElement(int p)
|
||||
: NURBSFiniteElement(1, Geometry::SEGMENT, p + 1, p, FunctionSpace::Qk),
|
||||
: ScalarFiniteElement(1, Geometry::SEGMENT, p + 1, p, FunctionSpace::Qk),
|
||||
NURBSFiniteElement(1),
|
||||
shape_x(p + 1) { }
|
||||
|
||||
virtual void SetOrder() const;
|
||||
@@ -84,7 +89,8 @@ public:
|
||||
};
|
||||
|
||||
/// An arbitrary order 2D NURBS element on a square
|
||||
class NURBS2DFiniteElement : public NURBSFiniteElement
|
||||
class NURBS2DFiniteElement : public ScalarFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector u, shape_x, shape_y, dshape_x, dshape_y, d2shape_x, d2shape_y;
|
||||
@@ -93,16 +99,18 @@ protected:
|
||||
public:
|
||||
/// Construct the NURBS2DFiniteElement of order @a p
|
||||
NURBS2DFiniteElement(int p)
|
||||
: NURBSFiniteElement(2, Geometry::SQUARE, (p + 1)*(p + 1), p,
|
||||
FunctionSpace::Qk),
|
||||
: ScalarFiniteElement(2, Geometry::SQUARE, (p + 1)*(p + 1), p,
|
||||
FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
u(dof), shape_x(p + 1), shape_y(p + 1), dshape_x(p + 1),
|
||||
dshape_y(p + 1), d2shape_x(p + 1), d2shape_y(p + 1), du(dof,2)
|
||||
{ orders[0] = orders[1] = p; }
|
||||
|
||||
/// Construct the NURBS2DFiniteElement with x-order @a px and y-order @a py
|
||||
NURBS2DFiniteElement(int px, int py)
|
||||
: NURBSFiniteElement(2, Geometry::SQUARE, (px + 1)*(py + 1),
|
||||
std::max(px, py), FunctionSpace::Qk),
|
||||
: ScalarFiniteElement(2, Geometry::SQUARE, (px + 1)*(py + 1),
|
||||
std::max(px, py), FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
u(dof), shape_x(px + 1), shape_y(py + 1), dshape_x(px + 1),
|
||||
dshape_y(py + 1), d2shape_x(px + 1), d2shape_y(py + 1), du(dof,2)
|
||||
{ orders[0] = px; orders[1] = py; }
|
||||
@@ -116,7 +124,8 @@ public:
|
||||
};
|
||||
|
||||
/// An arbitrary order 3D NURBS element on a cube
|
||||
class NURBS3DFiniteElement : public NURBSFiniteElement
|
||||
class NURBS3DFiniteElement : public ScalarFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector u, shape_x, shape_y, shape_z;
|
||||
@@ -127,8 +136,9 @@ protected:
|
||||
public:
|
||||
/// Construct the NURBS3DFiniteElement of order @a p
|
||||
NURBS3DFiniteElement(int p)
|
||||
: NURBSFiniteElement(3, Geometry::CUBE, (p + 1)*(p + 1)*(p + 1), p,
|
||||
FunctionSpace::Qk),
|
||||
: ScalarFiniteElement(3, Geometry::CUBE, (p + 1)*(p + 1)*(p + 1), p,
|
||||
FunctionSpace::Qk),
|
||||
NURBSFiniteElement(3),
|
||||
u(dof), shape_x(p + 1), shape_y(p + 1), shape_z(p + 1),
|
||||
dshape_x(p + 1), dshape_y(p + 1), dshape_z(p + 1),
|
||||
d2shape_x(p + 1), d2shape_y(p + 1), d2shape_z(p + 1), du(dof,3)
|
||||
@@ -137,8 +147,9 @@ public:
|
||||
/// Construct the NURBS3DFiniteElement with x-order @a px and y-order @a py
|
||||
/// and z-order @a pz
|
||||
NURBS3DFiniteElement(int px, int py, int pz)
|
||||
: NURBSFiniteElement(3, Geometry::CUBE, (px + 1)*(py + 1)*(pz + 1),
|
||||
std::max(std::max(px,py),pz), FunctionSpace::Qk),
|
||||
: ScalarFiniteElement(3, Geometry::CUBE, (px + 1)*(py + 1)*(pz + 1),
|
||||
std::max(std::max(px,py),pz), FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
u(dof), shape_x(px + 1), shape_y(py + 1), shape_z(pz + 1),
|
||||
dshape_x(px + 1), dshape_y(py + 1), dshape_z(pz + 1),
|
||||
d2shape_x(px + 1), d2shape_y(py + 1), d2shape_z(pz + 1), du(dof,3)
|
||||
@@ -152,6 +163,352 @@ public:
|
||||
DenseMatrix &hessian) const;
|
||||
};
|
||||
|
||||
|
||||
/** An arbitrary order H(div)-conforming 2D NURBS element on a square.
|
||||
More details in the following papers:
|
||||
|
||||
[1] Annalisa Buffa, Carlo De Falco, Giancarlo Sangalli
|
||||
"Isogeometric analysis: stable elements for the 2D Stokes equation."
|
||||
International Journal for Numerical Methods in Fluids 65 (11‐12) 1407-1422
|
||||
|
||||
[2] John A Evans, Thomas JR Hughes
|
||||
"Isogeometric divergence-conforming B-splines for the unsteady Navier–Stokes equations."
|
||||
Journal of Computational Physics (241) 141-167
|
||||
*/
|
||||
class NURBS_HDiv2DFiniteElement : public VectorFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector shape_x, shape_y, dshape_x, dshape_y, d2shape_x, d2shape_y;
|
||||
mutable Vector shape1_x, shape1_y, dshape1_x, dshape1_y, d2shape1_x, d2shape1_y;
|
||||
mutable Vector u;
|
||||
mutable DenseMatrix du;
|
||||
mutable Array <const KnotVector*> kv1;
|
||||
|
||||
public:
|
||||
/// Construct the NURBS_HDiv2DFiniteElement of order @a p
|
||||
NURBS_HDiv2DFiniteElement(int p)
|
||||
: VectorFiniteElement(2, Geometry::SQUARE, 2*(p + 1)*(p + 2), p,
|
||||
H_DIV,FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
shape_x(p + 1), shape_y(p + 1), dshape_x(p + 1),
|
||||
dshape_y(p + 1), d2shape_x(p + 1), d2shape_y(p + 1),
|
||||
shape1_x(p + 2), shape1_y(p + 2), dshape1_x(p + 2),
|
||||
dshape1_y(p + 2), d2shape1_x(p + 2), d2shape1_y(p + 2),
|
||||
u(dof), du(dof,2)
|
||||
{
|
||||
orders[0] = orders[1] = p;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
}
|
||||
|
||||
/// Construct the NURBS_HDiv2DFiniteElement with x-order @a px and y-order @a py
|
||||
NURBS_HDiv2DFiniteElement(int px, int py)
|
||||
: VectorFiniteElement(2, Geometry::SQUARE,
|
||||
(px + 2)*(py + 1)+(px + 1)*(py + 2),
|
||||
std::max(px, py), H_DIV, FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
shape_x(px + 1), shape_y(py + 1), dshape_x(px + 1),
|
||||
dshape_y(py + 1), d2shape_x(px + 1), d2shape_y(py + 1),
|
||||
shape1_x(px + 2), shape1_y(py + 2), dshape1_x(px + 2),
|
||||
dshape1_y(py + 2), d2shape1_x(px + 2), d2shape1_y(py + 2),
|
||||
u(dof), du(dof,2)
|
||||
{
|
||||
orders[0] = px; orders[1] = py;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
}
|
||||
|
||||
virtual void SetOrder() const;
|
||||
|
||||
virtual void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the values of all shape functions of a *vector* finite
|
||||
element in physical space at the point described by @a Trans. */
|
||||
/** Each row of the result DenseMatrix @a shape contains the components of
|
||||
one vector shape function. The size (#dof x SDim) of @a shape must be set
|
||||
in advance, where SDim >= #dim is the physical space dimension as
|
||||
described by @a Trans. */
|
||||
virtual void CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the divergence of all shape functions of a *vector*
|
||||
finite element in reference space at the given point @a ip. */
|
||||
/** The size (#dof) of the result Vector @a divshape must be set in advance.
|
||||
*/
|
||||
virtual void CalcDivShape(const IntegrationPoint &ip,
|
||||
Vector &divshape) const;
|
||||
|
||||
~NURBS_HDiv2DFiniteElement();
|
||||
};
|
||||
|
||||
|
||||
/** An arbitrary order H(div)-conforming 3D NURBS element on a cube
|
||||
More details in the following papers:
|
||||
|
||||
[1] Annalisa Buffa, Carlo De Falco, Giancarlo Sangalli
|
||||
"Isogeometric analysis: stable elements for the 2D Stokes equation."
|
||||
International Journal for Numerical Methods in Fluids 65 (11‐12) 1407-1422
|
||||
|
||||
[2] John A Evans, Thomas JR Hughes
|
||||
"Isogeometric divergence-conforming B-splines for the unsteady
|
||||
Navier–Stokes equations."
|
||||
Journal of Computational Physics (241) 141-167 */
|
||||
class NURBS_HDiv3DFiniteElement : public VectorFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector shape_x, shape_y, shape_z;
|
||||
mutable Vector dshape_x, dshape_y, dshape_z;
|
||||
mutable Vector d2shape_x, d2shape_y, d2shape_z;
|
||||
mutable Vector shape1_x, shape1_y, shape1_z;
|
||||
mutable Vector dshape1_x, dshape1_y, dshape1_z;
|
||||
mutable Vector d2shape1_x, d2shape1_y, d2shape1_z;
|
||||
mutable Vector u;
|
||||
mutable DenseMatrix du;
|
||||
mutable Array <const KnotVector*> kv1;
|
||||
|
||||
public:
|
||||
/// Construct the NURBS_HDiv3DFiniteElement of order @a p
|
||||
NURBS_HDiv3DFiniteElement(int p)
|
||||
: VectorFiniteElement(3, Geometry::CUBE, 3*(p + 1)*(p + 1)*(p + 2),
|
||||
p, H_DIV,FunctionSpace::Qk),
|
||||
NURBSFiniteElement(3),
|
||||
shape_x(p + 1), shape_y(p + 1), shape_z(p + 1),
|
||||
dshape_x(p + 1), dshape_y(p + 1), dshape_z(p + 1),
|
||||
d2shape_x(p + 1), d2shape_y(p + 1), d2shape_z(p + 1),
|
||||
shape1_x(p + 2), shape1_y(p + 2), shape1_z(p + 2),
|
||||
dshape1_x(p + 2), dshape1_y(p + 2),dshape1_z(p + 2),
|
||||
d2shape1_x(p + 2), d2shape1_y(p + 2), d2shape1_z(p + 2),
|
||||
u(dof), du(dof,3)
|
||||
{
|
||||
orders[0] = orders[1] = orders[2] = p;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
kv1[2] = nullptr;
|
||||
}
|
||||
|
||||
/// Construct the NURBS_HDiv3DFiniteElement with x-order @a px, y-order @a py and z-order @a pz
|
||||
NURBS_HDiv3DFiniteElement(int px, int py, int pz)
|
||||
: VectorFiniteElement(3, Geometry::CUBE,
|
||||
(px + 2)*(py + 1)*(pz + 1) +
|
||||
(px + 1)*(py + 2)*(pz + 1) +
|
||||
(px + 1)*(py + 1)*(pz + 2),
|
||||
std::max(px, py), H_DIV, FunctionSpace::Qk),
|
||||
NURBSFiniteElement(3),
|
||||
shape_x(px + 1), shape_y(py + 1), shape_z(pz + 1),
|
||||
dshape_x(px + 1), dshape_y(py + 1), dshape_z(pz + 1),
|
||||
d2shape_x(px + 1), d2shape_y(py + 1), d2shape_z(pz + 1),
|
||||
shape1_x(px + 2), shape1_y(py + 2), shape1_z(pz + 2),
|
||||
dshape1_x(px + 2), dshape1_y(py + 2),dshape1_z(pz + 2),
|
||||
d2shape1_x(px + 2), d2shape1_y(py + 2), d2shape1_z(pz + 2),
|
||||
u(dof), du(dof,3)
|
||||
{
|
||||
orders[0] = px; orders[1] = py; orders[2] = pz;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
kv1[2] = nullptr;
|
||||
}
|
||||
|
||||
virtual void SetOrder() const;
|
||||
|
||||
virtual void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the values of all shape functions of a *vector* finite
|
||||
element in physical space at the point described by @a Trans. */
|
||||
/** Each row of the result DenseMatrix @a shape contains the components of
|
||||
one vector shape function. The size (#dof x SDim) of @a shape must be set
|
||||
in advance, where SDim >= #dim is the physical space dimension as
|
||||
described by @a Trans. */
|
||||
virtual void CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the divergence of all shape functions of a *vector*
|
||||
finite element in reference space at the given point @a ip. */
|
||||
/** The size (#dof) of the result Vector @a divshape must be set in advance.
|
||||
*/
|
||||
virtual void CalcDivShape(const IntegrationPoint &ip,
|
||||
Vector &divshape) const;
|
||||
|
||||
~NURBS_HDiv3DFiniteElement();
|
||||
};
|
||||
|
||||
|
||||
/** An arbitrary order H(curl)-conforming 2D NURBS element on a square
|
||||
More details in the following paper:
|
||||
|
||||
[1] Annalisa Buffa, Giancarlo Sangalli, Rafael Vázquez
|
||||
"Isogeometric analysis in electromagnetics: B-splines approximation."
|
||||
Computer Methods in Applied Mechanics and Engineering (199) 1143-1152 */
|
||||
class NURBS_HCurl2DFiniteElement : public VectorFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector shape_x, shape_y, dshape_x, dshape_y, d2shape_x, d2shape_y;
|
||||
mutable Vector shape1_x, shape1_y, dshape1_x, dshape1_y, d2shape1_x, d2shape1_y;
|
||||
mutable Vector u;
|
||||
mutable DenseMatrix du;
|
||||
mutable Array <const KnotVector*> kv1;
|
||||
|
||||
public:
|
||||
/// Construct the NURBS_HCurl2DFiniteElement of order @a p
|
||||
NURBS_HCurl2DFiniteElement(int p)
|
||||
: VectorFiniteElement(2, Geometry::SQUARE, 2*(p + 1)*(p + 2), p,
|
||||
H_CURL,FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
shape_x(p + 1), shape_y(p + 1), dshape_x(p + 1),
|
||||
dshape_y(p + 1), d2shape_x(p + 1), d2shape_y(p + 1),
|
||||
shape1_x(p + 2), shape1_y(p + 2), dshape1_x(p + 2),
|
||||
dshape1_y(p + 2), d2shape1_x(p + 2), d2shape1_y(p + 2),
|
||||
u(dof), du(dof,2)
|
||||
{
|
||||
orders[0] = orders[1] = p;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
}
|
||||
|
||||
/// Construct the NURBS_HCurl2DFiniteElement with x-order @a px and y-order @a py
|
||||
NURBS_HCurl2DFiniteElement(int px, int py)
|
||||
: VectorFiniteElement(2, Geometry::SQUARE,
|
||||
(px + 1)*(py + 2)+(px + 2)*(py + 1),
|
||||
std::max(px, py), H_CURL, FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
shape_x(px + 1), shape_y(py + 1), dshape_x(px + 1),
|
||||
dshape_y(py + 1), d2shape_x(px + 1), d2shape_y(py + 1),
|
||||
shape1_x(px + 2), shape1_y(py + 2), dshape1_x(px + 2),
|
||||
dshape1_y(py + 2), d2shape1_x(px + 2), d2shape1_y(py + 2),
|
||||
u(dof), du(dof,2)
|
||||
{
|
||||
orders[0] = px; orders[1] = py;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
}
|
||||
|
||||
virtual void SetOrder() const;
|
||||
|
||||
virtual void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the values of all shape functions of a *vector* finite
|
||||
element in physical space at the point described by @a Trans. */
|
||||
/** Each row of the result DenseMatrix @a shape contains the components of
|
||||
one vector shape function. The size (#dof x SDim) of @a shape must be set
|
||||
in advance, where SDim >= #dim is the physical space dimension as
|
||||
described by @a Trans. */
|
||||
virtual void CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the curl of all shape functions of a *vector* finite
|
||||
element in reference space at the given point @a ip. */
|
||||
/** Each row of the result DenseMatrix @a curl_shape contains the components
|
||||
of the curl of one vector shape function. The size (#dof x CDim) of
|
||||
@a curl_shape must be set in advance, where CDim = 3 for #dim = 3 and
|
||||
CDim = 1 for #dim = 2. */
|
||||
virtual void CalcCurlShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &curl_shape) const;
|
||||
|
||||
~NURBS_HCurl2DFiniteElement();
|
||||
};
|
||||
|
||||
|
||||
/** An arbitrary order H(curl)-conforming 3D NURBS element on a cube
|
||||
More details in the following paper:
|
||||
|
||||
[1] Annalisa Buffa, Giancarlo Sangalli, Rafael Vázquez
|
||||
"Isogeometric analysis in electromagnetics: B-splines approximation."
|
||||
Computer Methods in Applied Mechanics and Engineering (199) 1143-1152 */
|
||||
class NURBS_HCurl3DFiniteElement : public VectorFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector shape_x, shape_y, shape_z;
|
||||
mutable Vector dshape_x, dshape_y, dshape_z;
|
||||
mutable Vector d2shape_x, d2shape_y, d2shape_z;
|
||||
mutable Vector shape1_x, shape1_y, shape1_z;
|
||||
mutable Vector dshape1_x, dshape1_y, dshape1_z;
|
||||
mutable Vector d2shape1_x, d2shape1_y, d2shape1_z;
|
||||
mutable Vector u;
|
||||
mutable DenseMatrix du;
|
||||
mutable Array <const KnotVector*> kv1;
|
||||
|
||||
public:
|
||||
/// Construct the NURBS_HCurl3DFiniteElement of order @a p
|
||||
NURBS_HCurl3DFiniteElement(int p)
|
||||
: VectorFiniteElement(3, Geometry::CUBE, 3*(p + 1)*(p + 2)*(p + 2), p,
|
||||
H_CURL,FunctionSpace::Qk),
|
||||
NURBSFiniteElement(3),
|
||||
shape_x(p + 1), shape_y(p + 1), shape_z(p + 1),
|
||||
dshape_x(p + 1), dshape_y(p + 1), dshape_z(p + 1),
|
||||
d2shape_x(p + 1), d2shape_y(p + 1), d2shape_z(p + 1),
|
||||
shape1_x(p + 2), shape1_y(p + 2), shape1_z(p + 2),
|
||||
dshape1_x(p + 2), dshape1_y(p + 2),dshape1_z(p + 2),
|
||||
d2shape1_x(p + 2), d2shape1_y(p + 2), d2shape1_z(p + 2),
|
||||
u(dof), du(dof,3)
|
||||
{
|
||||
orders[0] = orders[1] = orders[2] = p;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
kv1[2] = nullptr;
|
||||
}
|
||||
|
||||
/// Construct the NURBS_HCurl3DFiniteElement with x-order @a px, y-order @a py and z-order @a pz
|
||||
NURBS_HCurl3DFiniteElement(int px, int py, int pz)
|
||||
: VectorFiniteElement(3, Geometry::CUBE,
|
||||
(px + 1)*(py + 2)*(pz + 2) +
|
||||
(px + 2)*(py + 1)*(pz + 2) +
|
||||
(px + 2)*(py + 2)*(pz + 1),
|
||||
std::max(std::max(px, py), pz), H_CURL, FunctionSpace::Qk),
|
||||
NURBSFiniteElement(3),
|
||||
shape_x(px + 1), shape_y(py + 1), shape_z(pz + 1),
|
||||
dshape_x(px + 1), dshape_y(py + 1), dshape_z(pz + 1),
|
||||
d2shape_x(px + 1), d2shape_y(py + 1), d2shape_z(pz + 1),
|
||||
shape1_x(px + 2), shape1_y(py + 2), shape1_z(pz + 2),
|
||||
dshape1_x(px + 2), dshape1_y(py + 2),dshape1_z(pz + 2),
|
||||
d2shape1_x(px + 2), d2shape1_y(py + 2), d2shape1_z(pz + 2),
|
||||
u(dof), du(dof,3)
|
||||
{
|
||||
orders[0] = px; orders[1] = py; orders[2] = pz;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
kv1[2] = nullptr;
|
||||
}
|
||||
|
||||
virtual void SetOrder() const;
|
||||
|
||||
virtual void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the values of all shape functions of a *vector* finite
|
||||
element in physical space at the point described by @a Trans. */
|
||||
/** Each row of the result DenseMatrix @a shape contains the components of
|
||||
one vector shape function. The size (#dof x SDim) of @a shape must be set
|
||||
in advance, where SDim >= #dim is the physical space dimension as
|
||||
described by @a Trans. */
|
||||
virtual void CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the curl of all shape functions of a *vector* finite
|
||||
element in reference space at the given point @a ip. */
|
||||
/** Each row of the result DenseMatrix @a curl_shape contains the components
|
||||
of the curl of one vector shape function. The size (#dof x CDim) of
|
||||
@a curl_shape must be set in advance, where CDim = 3 for #dim = 3 and
|
||||
CDim = 1 for #dim = 2. */
|
||||
virtual void CalcCurlShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &curl_shape) const;
|
||||
|
||||
~NURBS_HCurl3DFiniteElement();
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
|
||||
+214
@@ -344,6 +344,32 @@ FiniteElementCollection *FiniteElementCollection::New(const char *name)
|
||||
{
|
||||
fec = new Local_FECollection(name + 6);
|
||||
}
|
||||
else if (!strncmp(name, "NURBS_HDiv", 10))
|
||||
{
|
||||
if (name[10] != '\0')
|
||||
{
|
||||
// "NURBS" + "number" --> fixed order nurbs collection
|
||||
fec = new NURBS_HDivFECollection(atoi(name + 10));
|
||||
}
|
||||
else
|
||||
{
|
||||
// "NURBS" --> variable order nurbs collection
|
||||
fec = new NURBS_HDivFECollection();
|
||||
}
|
||||
}
|
||||
else if (!strncmp(name, "NURBS_HCurl", 11))
|
||||
{
|
||||
if (name[11] != '\0')
|
||||
{
|
||||
// "NURBS" + "number" --> fixed order nurbs collection
|
||||
fec = new NURBS_HCurlFECollection(atoi(name + 11));
|
||||
}
|
||||
else
|
||||
{
|
||||
// "NURBS" --> variable order nurbs collection
|
||||
fec = new NURBS_HCurlFECollection();
|
||||
}
|
||||
}
|
||||
else if (!strncmp(name, "NURBS", 5))
|
||||
{
|
||||
if (name[5] != '\0')
|
||||
@@ -3533,4 +3559,192 @@ FiniteElementCollection *NURBSFECollection::GetTraceCollection() const
|
||||
return NULL;
|
||||
}
|
||||
|
||||
|
||||
NURBS_HDivFECollection::NURBS_HDivFECollection(int Order, const int dim)
|
||||
: NURBSFECollection((Order == VariableOrder) ? 1 : Order)
|
||||
{
|
||||
const int order = (Order == VariableOrder) ? 1 : Order;
|
||||
|
||||
SegmentFE = new NURBS1DFiniteElement(order);
|
||||
QuadrilateralFE = new NURBS2DFiniteElement(order);
|
||||
|
||||
QuadrilateralVFE = new NURBS_HDiv2DFiniteElement(order);
|
||||
ParallelepipedVFE = new NURBS_HDiv3DFiniteElement(order);
|
||||
|
||||
if (dim != -1) { SetDim(dim); }
|
||||
SetOrder(Order);
|
||||
}
|
||||
|
||||
void NURBS_HDivFECollection::SetDim(int dim)
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
sFE = SegmentFE;
|
||||
qFE = QuadrilateralVFE;
|
||||
hFE = nullptr;
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
sFE = nullptr;
|
||||
qFE = QuadrilateralFE;
|
||||
hFE = ParallelepipedVFE;
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem::err<<"Dimension = "<<dim<<endl;
|
||||
mfem_error ("NURBS_HDivFECollection: wrong dimension!");
|
||||
}
|
||||
}
|
||||
|
||||
NURBS_HDivFECollection::~NURBS_HDivFECollection()
|
||||
{
|
||||
delete SegmentFE;
|
||||
delete QuadrilateralFE;
|
||||
delete QuadrilateralVFE;
|
||||
delete ParallelepipedVFE;
|
||||
}
|
||||
|
||||
const FiniteElement *
|
||||
NURBS_HDivFECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
|
||||
{
|
||||
switch (GeomType)
|
||||
{
|
||||
case Geometry::SEGMENT: return sFE;
|
||||
case Geometry::SQUARE: return qFE;
|
||||
case Geometry::CUBE: return hFE;
|
||||
default:
|
||||
if (error_mode == RETURN_NULL) { return nullptr; }
|
||||
mfem_error ("NURBS_HDivFECollection: unknown geometry type.");
|
||||
}
|
||||
return QuadrilateralFE; // Make some compilers happy
|
||||
}
|
||||
|
||||
void NURBS_HDivFECollection::SetOrder(int Order) const
|
||||
{
|
||||
mOrder = Order;
|
||||
if (Order != VariableOrder)
|
||||
{
|
||||
snprintf(name, 16, "NURBS_HDiv%i", Order);
|
||||
}
|
||||
else
|
||||
{
|
||||
snprintf(name, 16, "NURBS_HDiv");
|
||||
}
|
||||
}
|
||||
|
||||
int NURBS_HDivFECollection::DofForGeometry(Geometry::Type GeomType) const
|
||||
{
|
||||
mfem_error("NURBS_HDivFECollection::DofForGeometry");
|
||||
return 0; // Make some compilers happy
|
||||
}
|
||||
|
||||
const int *NURBS_HDivFECollection::DofOrderForOrientation(
|
||||
Geometry::Type GeomType,
|
||||
int Or) const
|
||||
{
|
||||
mfem_error("NURBS_HDivFECollection::DofOrderForOrientation");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
FiniteElementCollection *NURBS_HDivFECollection::GetTraceCollection() const
|
||||
{
|
||||
MFEM_ABORT("NURBS finite elements can not be statically condensed!");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
NURBS_HCurlFECollection::NURBS_HCurlFECollection(int Order, const int dim)
|
||||
: NURBSFECollection((Order == VariableOrder) ? 1 : Order)
|
||||
{
|
||||
const int order = (Order == VariableOrder) ? 1 : Order;
|
||||
|
||||
SegmentFE = new NURBS1DFiniteElement(order+1);
|
||||
QuadrilateralFE = new NURBS2DFiniteElement(order+1);
|
||||
|
||||
QuadrilateralVFE = new NURBS_HCurl2DFiniteElement(order);
|
||||
ParallelepipedVFE = new NURBS_HCurl3DFiniteElement(order);
|
||||
if (dim != -1) { SetDim(dim); }
|
||||
SetOrder(Order);
|
||||
}
|
||||
|
||||
void NURBS_HCurlFECollection::SetDim(int dim)
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
sFE = SegmentFE;
|
||||
qFE = QuadrilateralVFE;
|
||||
hFE = nullptr;
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
sFE = nullptr;
|
||||
qFE = QuadrilateralFE;
|
||||
hFE = ParallelepipedVFE;
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem::err<<"Dimension = "<<dim<<endl;
|
||||
mfem_error ("NURBS_HCurlFECollection: wrong dimension!");
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
NURBS_HCurlFECollection::~NURBS_HCurlFECollection()
|
||||
{
|
||||
delete SegmentFE;
|
||||
delete QuadrilateralFE;
|
||||
delete QuadrilateralVFE;
|
||||
delete ParallelepipedVFE;
|
||||
}
|
||||
|
||||
const FiniteElement *
|
||||
NURBS_HCurlFECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
|
||||
{
|
||||
switch (GeomType)
|
||||
{
|
||||
case Geometry::SEGMENT: return sFE;
|
||||
case Geometry::SQUARE: return qFE;
|
||||
case Geometry::CUBE: return hFE;
|
||||
default:
|
||||
if (error_mode == RETURN_NULL) { return nullptr; }
|
||||
mfem_error ("NURBS_HCurlFECollection: unknown geometry type.");
|
||||
}
|
||||
return QuadrilateralFE; // Make some compilers happy
|
||||
}
|
||||
|
||||
void NURBS_HCurlFECollection::SetOrder(int Order) const
|
||||
{
|
||||
mOrder = Order;
|
||||
if (Order != VariableOrder)
|
||||
{
|
||||
snprintf(name, 16, "NURBS_HCurl%i", Order);
|
||||
}
|
||||
else
|
||||
{
|
||||
snprintf(name, 16, "NURBS_HCurl");
|
||||
}
|
||||
}
|
||||
|
||||
int NURBS_HCurlFECollection::DofForGeometry(Geometry::Type GeomType) const
|
||||
{
|
||||
mfem_error("NURBS_HCurlFECollection::DofForGeometry");
|
||||
return 0; // Make some compilers happy
|
||||
}
|
||||
|
||||
const int *NURBS_HCurlFECollection::DofOrderForOrientation(
|
||||
Geometry::Type GeomType,
|
||||
int Or) const
|
||||
{
|
||||
mfem_error("NURBS_HCurlFECollection::DofOrderForOrientation");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
FiniteElementCollection *NURBS_HCurlFECollection::GetTraceCollection() const
|
||||
{
|
||||
MFEM_ABORT("NURBS finite elements can not be statically condensed!");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
||||
+109
-4
@@ -680,8 +680,8 @@ public:
|
||||
/// Arbitrary order non-uniform rational B-splines (NURBS) finite elements.
|
||||
class NURBSFECollection : public FiniteElementCollection
|
||||
{
|
||||
private:
|
||||
PointFiniteElement *PointFE;
|
||||
protected:
|
||||
PointFiniteElement *PointFE;
|
||||
NURBS1DFiniteElement *SegmentFE;
|
||||
NURBS2DFiniteElement *QuadrilateralFE;
|
||||
NURBS3DFiniteElement *ParallelepipedFE;
|
||||
@@ -701,13 +701,15 @@ public:
|
||||
order, or VariableOrder (default). */
|
||||
explicit NURBSFECollection(int Order = VariableOrder);
|
||||
|
||||
void Reset() const
|
||||
virtual void Reset() const
|
||||
{
|
||||
SegmentFE->Reset();
|
||||
QuadrilateralFE->Reset();
|
||||
ParallelepipedFE->Reset();
|
||||
}
|
||||
|
||||
virtual void SetDim(const int dim) {};
|
||||
|
||||
/** @brief Get the order of the NURBS collection: either a positive number,
|
||||
when using fixed order, or VariableOrder. */
|
||||
/** @note Not to be confused with FiniteElementCollection::GetOrder(). */
|
||||
@@ -715,7 +717,7 @@ public:
|
||||
|
||||
/** @brief Set the order and the name, based on the given @a Order: either a
|
||||
positive number for fixed order, or VariableOrder. */
|
||||
void SetOrder(int Order) const;
|
||||
virtual void SetOrder(int Order) const;
|
||||
|
||||
const FiniteElement *
|
||||
FiniteElementForGeometry(Geometry::Type GeomType) const override;
|
||||
@@ -734,6 +736,109 @@ public:
|
||||
virtual ~NURBSFECollection();
|
||||
};
|
||||
|
||||
/// Arbitrary order H(div) NURBS finite elements.
|
||||
class NURBS_HDivFECollection : public NURBSFECollection
|
||||
{
|
||||
private:
|
||||
|
||||
NURBS1DFiniteElement *SegmentFE;
|
||||
NURBS2DFiniteElement *QuadrilateralFE;
|
||||
|
||||
NURBS_HDiv2DFiniteElement *QuadrilateralVFE;
|
||||
NURBS_HDiv3DFiniteElement *ParallelepipedVFE;
|
||||
|
||||
FiniteElement *sFE;
|
||||
FiniteElement *qFE;
|
||||
FiniteElement *hFE;
|
||||
|
||||
public:
|
||||
|
||||
/** @brief The parameter @a Order must be either a positive number, for fixed
|
||||
order, or VariableOrder (default). */
|
||||
explicit NURBS_HDivFECollection(int Order = VariableOrder, const int vdim = -1);
|
||||
|
||||
virtual void Reset() const override
|
||||
{
|
||||
SegmentFE->Reset();
|
||||
QuadrilateralFE->Reset();
|
||||
QuadrilateralVFE->Reset();
|
||||
ParallelepipedVFE->Reset();
|
||||
}
|
||||
|
||||
virtual void SetDim(const int dim) override;
|
||||
|
||||
/** @brief Set the order and the name, based on the given @a Order: either a
|
||||
positive number for fixed order, or VariableOrder. */
|
||||
virtual void SetOrder(int Order) const override;
|
||||
|
||||
const FiniteElement *
|
||||
FiniteElementForGeometry(Geometry::Type GeomType) const override;
|
||||
|
||||
int DofForGeometry(Geometry::Type GeomType) const override;
|
||||
|
||||
const int *DofOrderForOrientation(Geometry::Type GeomType,
|
||||
int Or) const override;
|
||||
|
||||
const char *Name() const override { return name; }
|
||||
|
||||
int GetContType() const override { return CONTINUOUS; }
|
||||
|
||||
FiniteElementCollection *GetTraceCollection() const override;
|
||||
|
||||
virtual ~NURBS_HDivFECollection();
|
||||
};
|
||||
|
||||
/// Arbitrary order H(curl) NURBS finite elements.
|
||||
class NURBS_HCurlFECollection : public NURBSFECollection
|
||||
{
|
||||
private:
|
||||
NURBS1DFiniteElement *SegmentFE;
|
||||
NURBS2DFiniteElement *QuadrilateralFE;
|
||||
|
||||
NURBS_HCurl2DFiniteElement *QuadrilateralVFE;
|
||||
NURBS_HCurl3DFiniteElement *ParallelepipedVFE;
|
||||
|
||||
FiniteElement *sFE;
|
||||
FiniteElement *qFE;
|
||||
FiniteElement *hFE;
|
||||
public:
|
||||
|
||||
/** @brief The parameter @a Order must be either a positive number, for fixed
|
||||
order, or VariableOrder (default). */
|
||||
explicit NURBS_HCurlFECollection(int Order = VariableOrder,
|
||||
const int vdim = -1);
|
||||
|
||||
virtual void Reset() const override
|
||||
{
|
||||
SegmentFE->Reset();
|
||||
QuadrilateralFE->Reset();
|
||||
QuadrilateralVFE->Reset();
|
||||
ParallelepipedVFE->Reset();
|
||||
}
|
||||
|
||||
virtual void SetDim(const int dim) override;
|
||||
|
||||
/** @brief Set the order and the name, based on the given @a Order: either a
|
||||
positive number for fixed order, or VariableOrder. */
|
||||
virtual void SetOrder(int Order) const override;
|
||||
|
||||
const FiniteElement *
|
||||
FiniteElementForGeometry(Geometry::Type GeomType) const override;
|
||||
|
||||
int DofForGeometry(Geometry::Type GeomType) const override;
|
||||
|
||||
const int *DofOrderForOrientation(Geometry::Type GeomType,
|
||||
int Or) const override;
|
||||
|
||||
const char *Name() const override { return name; }
|
||||
|
||||
int GetContType() const override { return CONTINUOUS; }
|
||||
|
||||
FiniteElementCollection *GetTraceCollection() const override;
|
||||
|
||||
virtual ~NURBS_HCurlFECollection();
|
||||
};
|
||||
|
||||
/// Piecewise-(bi/tri)linear continuous finite elements.
|
||||
class LinearFECollection : public FiniteElementCollection
|
||||
{
|
||||
|
||||
+263
-38
@@ -1525,6 +1525,67 @@ SparseMatrix *FiniteElementSpace::RefinementMatrix_main(
|
||||
return P;
|
||||
}
|
||||
|
||||
SparseMatrix *FiniteElementSpace::VariableOrderRefinementMatrix(
|
||||
const int coarse_ndofs, const Table &coarse_elem_dof) const
|
||||
{
|
||||
MFEM_VERIFY(mesh->GetLastOperation() == Mesh::REFINE, "");
|
||||
|
||||
Array<int> dofs, coarse_dofs, coarse_vdofs;
|
||||
Vector row;
|
||||
|
||||
Mesh::GeometryList elem_geoms(*mesh);
|
||||
|
||||
SparseMatrix *P = new SparseMatrix(GetVSize(), coarse_ndofs*vdim);
|
||||
|
||||
Array<int> mark(P->Height());
|
||||
mark = 0;
|
||||
|
||||
const CoarseFineTransformations &rtrans = mesh->GetRefinementTransforms();
|
||||
DenseMatrix lP;
|
||||
IsoparametricTransformation isotr;
|
||||
for (int k = 0; k < mesh->GetNE(); k++)
|
||||
{
|
||||
const Embedding &emb = rtrans.embeddings[k];
|
||||
const Geometry::Type geom = mesh->GetElementBaseGeometry(k);
|
||||
|
||||
const FiniteElement *fe = GetFE(k);
|
||||
isotr.SetIdentityTransformation(geom);
|
||||
const int ldof = fe->GetDof();
|
||||
lP.SetSize(ldof, ldof);
|
||||
const DenseTensor &pmats = rtrans.point_matrices[geom];
|
||||
isotr.SetPointMat(pmats(emb.matrix));
|
||||
fe->GetLocalInterpolation(isotr, lP);
|
||||
|
||||
const int fine_ldof = lP.Height();
|
||||
|
||||
elem_dof->GetRow(k, dofs);
|
||||
coarse_elem_dof.GetRow(emb.parent, coarse_dofs);
|
||||
|
||||
for (int vd = 0; vd < vdim; vd++)
|
||||
{
|
||||
coarse_dofs.Copy(coarse_vdofs);
|
||||
DofsToVDofs(vd, coarse_vdofs, coarse_ndofs);
|
||||
|
||||
for (int i = 0; i < fine_ldof; i++)
|
||||
{
|
||||
const int r = DofToVDof(dofs[i], vd);
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
|
||||
if (!mark[m])
|
||||
{
|
||||
lP.GetRow(i, row);
|
||||
P->SetRow(r, coarse_vdofs, row);
|
||||
mark[m] = 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
MFEM_VERIFY(mark.Sum() == P->Height(), "Not all rows of P set.");
|
||||
P->Finalize();
|
||||
return P;
|
||||
}
|
||||
|
||||
void FiniteElementSpace::GetLocalRefinementMatrices(
|
||||
Geometry::Type geom, DenseTensor &localP) const
|
||||
{
|
||||
@@ -1556,15 +1617,20 @@ SparseMatrix* FiniteElementSpace::RefinementMatrix(int old_ndofs,
|
||||
"Previous mesh is not coarser.");
|
||||
|
||||
Mesh::GeometryList elem_geoms(*mesh);
|
||||
|
||||
DenseTensor localP[Geometry::NumGeom];
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
if (!IsVariableOrder())
|
||||
{
|
||||
GetLocalRefinementMatrices(elem_geoms[i], localP[elem_geoms[i]]);
|
||||
DenseTensor localP[Geometry::NumGeom];
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
{
|
||||
GetLocalRefinementMatrices(elem_geoms[i], localP[elem_geoms[i]]);
|
||||
}
|
||||
return RefinementMatrix_main(old_ndofs, *old_elem_dof, old_elem_fos,
|
||||
localP);
|
||||
}
|
||||
else
|
||||
{
|
||||
return VariableOrderRefinementMatrix(old_ndofs, *old_elem_dof);
|
||||
}
|
||||
|
||||
return RefinementMatrix_main(old_ndofs, *old_elem_dof, old_elem_fos,
|
||||
localP);
|
||||
}
|
||||
|
||||
FiniteElementSpace::RefinementOperator::RefinementOperator(
|
||||
@@ -1582,9 +1648,12 @@ FiniteElementSpace::RefinementOperator::RefinementOperator(
|
||||
|
||||
Mesh::GeometryList elem_geoms(*fespace->GetMesh());
|
||||
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
if (!fespace->IsVariableOrder())
|
||||
{
|
||||
fespace->GetLocalRefinementMatrices(elem_geoms[i], localP[elem_geoms[i]]);
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
{
|
||||
fespace->GetLocalRefinementMatrices(elem_geoms[i], localP[elem_geoms[i]]);
|
||||
}
|
||||
}
|
||||
|
||||
ConstructDoFTransArray();
|
||||
@@ -1597,10 +1666,13 @@ FiniteElementSpace::RefinementOperator::RefinementOperator(
|
||||
{
|
||||
Mesh::GeometryList elem_geoms(*fespace->GetMesh());
|
||||
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
if (!fespace->IsVariableOrder())
|
||||
{
|
||||
fespace->GetLocalRefinementMatrices(*coarse_fes, elem_geoms[i],
|
||||
localP[elem_geoms[i]]);
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
{
|
||||
fespace->GetLocalRefinementMatrices(*coarse_fes, elem_geoms[i],
|
||||
localP[elem_geoms[i]]);
|
||||
}
|
||||
}
|
||||
|
||||
// Make a copy of the coarse elem_dof Table.
|
||||
@@ -1676,11 +1748,25 @@ void FiniteElementSpace::RefinementOperator::Mult(const Vector &x,
|
||||
|
||||
Vector subY, subX;
|
||||
|
||||
DenseMatrix eP;
|
||||
IsoparametricTransformation isotr;
|
||||
|
||||
for (int k = 0; k < mesh_ref->GetNE(); k++)
|
||||
{
|
||||
const Embedding &emb = trans_ref.embeddings[k];
|
||||
const Geometry::Type geom = mesh_ref->GetElementBaseGeometry(k);
|
||||
const DenseMatrix &lP = localP[geom](emb.matrix);
|
||||
if (fespace->IsVariableOrder())
|
||||
{
|
||||
const FiniteElement *fe = fespace->GetFE(k);
|
||||
isotr.SetIdentityTransformation(geom);
|
||||
const int ldof = fe->GetDof();
|
||||
eP.SetSize(ldof, ldof);
|
||||
const DenseTensor &pmats = trans_ref.point_matrices[geom];
|
||||
isotr.SetPointMat(pmats(emb.matrix));
|
||||
fe->GetLocalInterpolation(isotr, eP);
|
||||
}
|
||||
const DenseMatrix &lP = (fespace->IsVariableOrder()) ? eP : localP[geom](
|
||||
emb.matrix);
|
||||
|
||||
subY.SetSize(lP.Height());
|
||||
|
||||
@@ -1745,11 +1831,28 @@ void FiniteElementSpace::RefinementOperator::MultTranspose(const Vector &x,
|
||||
|
||||
Vector subY, subX, subYt;
|
||||
|
||||
DenseMatrix eP;
|
||||
IsoparametricTransformation isotr;
|
||||
const FiniteElement *fe = nullptr;
|
||||
|
||||
for (int k = 0; k < mesh_ref->GetNE(); k++)
|
||||
{
|
||||
const Embedding &emb = trans_ref.embeddings[k];
|
||||
const Geometry::Type geom = mesh_ref->GetElementBaseGeometry(k);
|
||||
const DenseMatrix &lP = localP[geom](emb.matrix);
|
||||
|
||||
if (fespace->IsVariableOrder())
|
||||
{
|
||||
fe = fespace->GetFE(k);
|
||||
isotr.SetIdentityTransformation(geom);
|
||||
const int ldof = fe->GetDof();
|
||||
eP.SetSize(ldof);
|
||||
const DenseTensor &pmats = trans_ref.point_matrices[geom];
|
||||
isotr.SetPointMat(pmats(emb.matrix));
|
||||
fe->GetLocalInterpolation(isotr, eP);
|
||||
}
|
||||
|
||||
const DenseMatrix &lP = (fespace->IsVariableOrder()) ? eP : localP[geom](
|
||||
emb.matrix);
|
||||
|
||||
DofTransformation *doftrans = fespace->GetElementDofs(k, f_dofs);
|
||||
old_elem_dof->GetRow(emb.parent, c_dofs);
|
||||
@@ -2108,9 +2211,12 @@ SparseMatrix* FiniteElementSpace::DerefinementMatrix(int old_ndofs,
|
||||
Mesh::GeometryList elem_geoms(*mesh);
|
||||
|
||||
DenseTensor localR[Geometry::NumGeom];
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
if (!IsVariableOrder())
|
||||
{
|
||||
GetLocalDerefinementMatrices(elem_geoms[i], localR[elem_geoms[i]]);
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
{
|
||||
GetLocalDerefinementMatrices(elem_geoms[i], localR[elem_geoms[i]]);
|
||||
}
|
||||
}
|
||||
|
||||
SparseMatrix *R = new SparseMatrix(ndofs*vdim, old_ndofs*vdim);
|
||||
@@ -2125,14 +2231,34 @@ SparseMatrix* FiniteElementSpace::DerefinementMatrix(int old_ndofs,
|
||||
|
||||
bool is_dg = FEColl()->GetContType() == FiniteElementCollection::DISCONTINUOUS;
|
||||
int num_marked = 0;
|
||||
const FiniteElement *fe = nullptr;
|
||||
DenseMatrix localRVO; //for variable order only
|
||||
for (int k = 0; k < dtrans.embeddings.Size(); k++)
|
||||
{
|
||||
const Embedding &emb = dtrans.embeddings[k];
|
||||
Geometry::Type geom = mesh->GetElementBaseGeometry(emb.parent);
|
||||
DenseMatrix &lR = localR[geom](emb.matrix);
|
||||
|
||||
if (IsVariableOrder())
|
||||
{
|
||||
fe = GetFE(emb.parent);
|
||||
const DenseTensor &pmats = dtrans.point_matrices[geom];
|
||||
const int ldof = fe->GetDof();
|
||||
|
||||
IsoparametricTransformation isotr;
|
||||
isotr.SetIdentityTransformation(geom);
|
||||
|
||||
localRVO.SetSize(ldof, ldof);
|
||||
isotr.SetPointMat(pmats(emb.matrix));
|
||||
// Local restriction is size ldofxldof assuming that the parent and
|
||||
// child are of same polynomial order.
|
||||
fe->GetLocalRestriction(isotr, localRVO);
|
||||
}
|
||||
DenseMatrix &lR = IsVariableOrder() ? localRVO : localR[geom](emb.matrix);
|
||||
|
||||
elem_dof->GetRow(emb.parent, dofs);
|
||||
old_elem_dof->GetRow(k, old_dofs);
|
||||
MFEM_VERIFY(old_dofs.Size() == dofs.Size(),
|
||||
"Parent and child must have same #dofs.");
|
||||
|
||||
for (int vd = 0; vd < vdim; vd++)
|
||||
{
|
||||
@@ -2158,7 +2284,7 @@ SparseMatrix* FiniteElementSpace::DerefinementMatrix(int old_ndofs,
|
||||
}
|
||||
}
|
||||
|
||||
if (!is_dg)
|
||||
if (!is_dg && !IsVariableOrder())
|
||||
{
|
||||
MFEM_VERIFY(num_marked == R->Height(),
|
||||
"internal error: not all rows of R were set.");
|
||||
@@ -2216,6 +2342,7 @@ void FiniteElementSpace::Constructor(Mesh *mesh_, NURBSExtension *NURBSext_,
|
||||
|
||||
const NURBSFECollection *nurbs_fec =
|
||||
dynamic_cast<const NURBSFECollection *>(fec_);
|
||||
|
||||
if (nurbs_fec)
|
||||
{
|
||||
MFEM_VERIFY(mesh_->NURBSext, "NURBS FE space requires a NURBS mesh.");
|
||||
@@ -2312,12 +2439,63 @@ void FiniteElementSpace::UpdateNURBS()
|
||||
face_dof = NULL;
|
||||
face_to_be.DeleteAll();
|
||||
|
||||
// Depending on the element type create the appropriate extensions
|
||||
// for the individual components.
|
||||
dynamic_cast<const NURBSFECollection *>(fec)->Reset();
|
||||
|
||||
ndofs = NURBSext->GetNDof();
|
||||
elem_dof = NURBSext->GetElementDofTable();
|
||||
bdr_elem_dof = NURBSext->GetBdrElementDofTable();
|
||||
if (dynamic_cast<const NURBS_HDivFECollection *>(fec))
|
||||
{
|
||||
VNURBSext.SetSize(mesh->Dimension());
|
||||
for (int d = 0; d < mesh->Dimension(); d++)
|
||||
{
|
||||
VNURBSext[d] = NURBSext->GetDivExtension(d);
|
||||
}
|
||||
}
|
||||
|
||||
if (dynamic_cast<const NURBS_HCurlFECollection *>(fec))
|
||||
{
|
||||
VNURBSext.SetSize(mesh->Dimension());
|
||||
for (int d = 0; d < mesh->Dimension(); d++)
|
||||
{
|
||||
VNURBSext[d] = NURBSext->GetCurlExtension(d);
|
||||
}
|
||||
}
|
||||
|
||||
// If required: concatenate the dof tables of the individual components into
|
||||
// one dof table for the vector fespace.
|
||||
if (VNURBSext.Size() == 2)
|
||||
{
|
||||
int offset1 = VNURBSext[0]->GetNDof();
|
||||
ndofs = VNURBSext[0]->GetNDof() + VNURBSext[1]->GetNDof();
|
||||
|
||||
// Merge Tables
|
||||
elem_dof = new Table(*VNURBSext[0]->GetElementDofTable(),
|
||||
*VNURBSext[1]->GetElementDofTable(),offset1 );
|
||||
|
||||
bdr_elem_dof = new Table(*VNURBSext[0]->GetBdrElementDofTable(),
|
||||
*VNURBSext[1]->GetBdrElementDofTable(),offset1);
|
||||
}
|
||||
else if (VNURBSext.Size() == 3)
|
||||
{
|
||||
int offset1 = VNURBSext[0]->GetNDof();
|
||||
int offset2 = offset1 + VNURBSext[1]->GetNDof();
|
||||
ndofs = offset2 + VNURBSext[2]->GetNDof();
|
||||
|
||||
// Merge Tables
|
||||
elem_dof = new Table(*VNURBSext[0]->GetElementDofTable(),
|
||||
*VNURBSext[1]->GetElementDofTable(),offset1,
|
||||
*VNURBSext[2]->GetElementDofTable(),offset2);
|
||||
|
||||
bdr_elem_dof = new Table(*VNURBSext[0]->GetBdrElementDofTable(),
|
||||
*VNURBSext[1]->GetBdrElementDofTable(),offset1,
|
||||
*VNURBSext[2]->GetBdrElementDofTable(),offset2);
|
||||
}
|
||||
else
|
||||
{
|
||||
ndofs = NURBSext->GetNDof();
|
||||
elem_dof = NURBSext->GetElementDofTable();
|
||||
bdr_elem_dof = NURBSext->GetBdrElementDofTable();
|
||||
}
|
||||
mesh_sequence = mesh->GetSequence();
|
||||
sequence++;
|
||||
}
|
||||
@@ -3319,11 +3497,21 @@ void FiniteElementSpace::Destroy()
|
||||
dof_elem_array.DeleteAll();
|
||||
dof_ldof_array.DeleteAll();
|
||||
|
||||
for (int i = 0; i < VNURBSext.Size(); i++)
|
||||
{
|
||||
delete VNURBSext[i];
|
||||
}
|
||||
|
||||
if (NURBSext)
|
||||
{
|
||||
if (own_ext) { delete NURBSext; }
|
||||
delete face_dof;
|
||||
face_to_be.DeleteAll();
|
||||
if (VNURBSext.Size() > 0 )
|
||||
{
|
||||
delete elem_dof;
|
||||
delete bdr_elem_dof;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -3335,6 +3523,8 @@ void FiniteElementSpace::Destroy()
|
||||
delete [] bdofs;
|
||||
}
|
||||
ceed::RemoveBasisAndRestriction(this);
|
||||
|
||||
|
||||
}
|
||||
|
||||
void FiniteElementSpace::DestroyDoFTransArray()
|
||||
@@ -3353,19 +3543,27 @@ void FiniteElementSpace::GetTransferOperator(
|
||||
|
||||
if (T.Type() == Operator::MFEM_SPARSEMAT)
|
||||
{
|
||||
Mesh::GeometryList elem_geoms(*mesh);
|
||||
|
||||
DenseTensor localP[Geometry::NumGeom];
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
if (!IsVariableOrder())
|
||||
{
|
||||
GetLocalRefinementMatrices(coarse_fes, elem_geoms[i],
|
||||
localP[elem_geoms[i]]);
|
||||
Mesh::GeometryList elem_geoms(*mesh);
|
||||
|
||||
DenseTensor localP[Geometry::NumGeom];
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
{
|
||||
GetLocalRefinementMatrices(coarse_fes, elem_geoms[i],
|
||||
localP[elem_geoms[i]]);
|
||||
}
|
||||
T.Reset(RefinementMatrix_main(coarse_fes.GetNDofs(),
|
||||
coarse_fes.GetElementToDofTable(),
|
||||
coarse_fes.
|
||||
GetElementToFaceOrientationTable(),
|
||||
localP));
|
||||
}
|
||||
else
|
||||
{
|
||||
T.Reset(VariableOrderRefinementMatrix(coarse_fes.GetNDofs(),
|
||||
coarse_fes.GetElementToDofTable()));
|
||||
}
|
||||
T.Reset(RefinementMatrix_main(coarse_fes.GetNDofs(),
|
||||
coarse_fes.GetElementToDofTable(),
|
||||
coarse_fes.
|
||||
GetElementToFaceOrientationTable(),
|
||||
localP));
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -3416,19 +3614,33 @@ void FiniteElementSpace::GetTrueTransferOperator(
|
||||
|
||||
void FiniteElementSpace::UpdateElementOrders()
|
||||
{
|
||||
const CoarseFineTransformations &cf_tr = mesh->GetRefinementTransforms();
|
||||
|
||||
Array<char> new_order(mesh->GetNE());
|
||||
switch (mesh->GetLastOperation())
|
||||
{
|
||||
case Mesh::REFINE:
|
||||
{
|
||||
const CoarseFineTransformations &cf_tr = mesh->GetRefinementTransforms();
|
||||
for (int i = 0; i < mesh->GetNE(); i++)
|
||||
{
|
||||
new_order[i] = elem_order[cf_tr.embeddings[i].parent];
|
||||
}
|
||||
break;
|
||||
}
|
||||
case Mesh::DEREFINE:
|
||||
{
|
||||
const CoarseFineTransformations &cf_tr =
|
||||
mesh->ncmesh->GetDerefinementTransforms();
|
||||
Table coarse_to_fine;
|
||||
cf_tr.MakeCoarseToFineTable(coarse_to_fine);
|
||||
Array<int> tabrow;
|
||||
for (int i = 0; i < coarse_to_fine.Size(); i++)
|
||||
{
|
||||
coarse_to_fine.GetRow(i, tabrow);
|
||||
//For now we require that all children are of same polynomial order.
|
||||
new_order[i] = elem_order[tabrow[0]];
|
||||
}
|
||||
break;
|
||||
}
|
||||
default:
|
||||
MFEM_ABORT("not implemented yet");
|
||||
}
|
||||
@@ -3523,11 +3735,23 @@ void FiniteElementSpace::Update(bool want_transform)
|
||||
{
|
||||
BuildConformingInterpolation();
|
||||
Th.Reset(DerefinementMatrix(old_ndofs, old_elem_dof, old_elem_fos));
|
||||
if (cP && cR)
|
||||
if (IsVariableOrder())
|
||||
{
|
||||
Th.SetOperatorOwner(false);
|
||||
Th.Reset(new TripleProductOperator(cP.get(), cR.get(), Th.Ptr(),
|
||||
false, false, true));
|
||||
if (cP && cR_hp)
|
||||
{
|
||||
Th.SetOperatorOwner(false);
|
||||
Th.Reset(new TripleProductOperator(cP.get(), cR_hp.get(), Th.Ptr(),
|
||||
false, false, true));
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
if (cP && cR)
|
||||
{
|
||||
Th.SetOperatorOwner(false);
|
||||
Th.Reset(new TripleProductOperator(cP.get(), cR.get(), Th.Ptr(),
|
||||
false, false, true));
|
||||
}
|
||||
}
|
||||
break;
|
||||
}
|
||||
@@ -3640,6 +3864,7 @@ FiniteElementCollection *FiniteElementSpace::Load(Mesh *m, std::istream &input)
|
||||
input >> ord;
|
||||
|
||||
NURBSFECollection *nurbs_fec = dynamic_cast<NURBSFECollection*>(r_fec);
|
||||
if (nurbs_fec) { nurbs_fec->SetDim(m->Dimension()); }
|
||||
NURBSExtension *nurbs_ext = NULL;
|
||||
if (fes_format == 90) // original format, v0.9
|
||||
{
|
||||
|
||||
@@ -268,6 +268,10 @@ protected:
|
||||
Array<int> dof_elem_array, dof_ldof_array;
|
||||
|
||||
NURBSExtension *NURBSext;
|
||||
/** array of NURBS extension for H(div) and H(curl) vector elements.
|
||||
For each direction an extension is created from the base NURBSext,
|
||||
with an increase in order in the appropriate direction. */
|
||||
Array<NURBSExtension*> VNURBSext;
|
||||
int own_ext;
|
||||
mutable Array<int> face_to_be; // NURBS FE space only
|
||||
|
||||
@@ -469,6 +473,11 @@ protected:
|
||||
const Table *coarse_elem_fos,
|
||||
const DenseTensor localP[]) const;
|
||||
|
||||
/* This method returns the Refinement matrix (i.e., the embedding)
|
||||
from a coarse variable-order fes to a fine fes (after a geometric refinement) */
|
||||
SparseMatrix *VariableOrderRefinementMatrix(const int coarse_ndofs,
|
||||
const Table &coarse_elem_dof) const;
|
||||
|
||||
void GetLocalRefinementMatrices(Geometry::Type geom,
|
||||
DenseTensor &localP) const;
|
||||
void GetLocalDerefinementMatrices(Geometry::Type geom,
|
||||
@@ -517,6 +526,8 @@ protected:
|
||||
const Array<int> *perm);
|
||||
|
||||
public:
|
||||
|
||||
|
||||
/** @brief Default constructor: the object is invalid until initialized using
|
||||
the method Load(). */
|
||||
FiniteElementSpace();
|
||||
|
||||
+86
-23
@@ -12,6 +12,8 @@
|
||||
// Implementation of GridFunction
|
||||
|
||||
#include "gridfunc.hpp"
|
||||
#include "linearform.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "quadinterpolator.hpp"
|
||||
#include "../mesh/nurbs.hpp"
|
||||
#include "../general/text.hpp"
|
||||
@@ -2372,19 +2374,48 @@ void GridFunction::ProjectCoefficient(Coefficient &coeff)
|
||||
|
||||
if (delta_c == NULL)
|
||||
{
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
|
||||
for (int i = 0; i < fes->GetNE(); i++)
|
||||
if (fes->GetNURBSext() == NULL)
|
||||
{
|
||||
doftrans = fes->GetElementVDofs(i, vdofs);
|
||||
vals.SetSize(vdofs.Size());
|
||||
fes->GetFE(i)->Project(coeff, *fes->GetElementTransformation(i), vals);
|
||||
if (doftrans)
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
|
||||
for (int i = 0; i < fes->GetNE(); i++)
|
||||
{
|
||||
doftrans->TransformPrimal(vals);
|
||||
doftrans = fes->GetElementVDofs(i, vdofs);
|
||||
vals.SetSize(vdofs.Size());
|
||||
fes->GetFE(i)->Project(coeff, *fes->GetElementTransformation(i), vals);
|
||||
if (doftrans)
|
||||
{
|
||||
doftrans->TransformPrimal(vals);
|
||||
}
|
||||
SetSubVector(vdofs, vals);
|
||||
}
|
||||
SetSubVector(vdofs, vals);
|
||||
}
|
||||
else
|
||||
{
|
||||
// Define and assemble linear form
|
||||
LinearForm b(fes);
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(coeff));
|
||||
b.Assemble();
|
||||
|
||||
// Define and assemble bilinear form
|
||||
BilinearForm a(fes);
|
||||
a.AddDomainIntegrator(new MassIntegrator());
|
||||
a.Assemble();
|
||||
|
||||
// Set solver and preconditioner
|
||||
SparseMatrix A(a.SpMat());
|
||||
GSSmoother prec(A);
|
||||
CGSolver cg;
|
||||
cg.SetOperator(A);
|
||||
cg.SetPreconditioner(prec);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(1000);
|
||||
cg.SetPrintLevel(0);
|
||||
|
||||
// Solve and get solution
|
||||
*this = 0.0;
|
||||
cg.Mult(b,*this);
|
||||
}
|
||||
}
|
||||
else
|
||||
@@ -2425,22 +2456,54 @@ void GridFunction::ProjectCoefficient(
|
||||
|
||||
void GridFunction::ProjectCoefficient(VectorCoefficient &vcoeff)
|
||||
{
|
||||
int i;
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
|
||||
DofTransformation * doftrans = NULL;
|
||||
|
||||
for (i = 0; i < fes->GetNE(); i++)
|
||||
if (fes->GetNURBSext() == NULL)
|
||||
{
|
||||
doftrans = fes->GetElementVDofs(i, vdofs);
|
||||
vals.SetSize(vdofs.Size());
|
||||
fes->GetFE(i)->Project(vcoeff, *fes->GetElementTransformation(i), vals);
|
||||
if (doftrans)
|
||||
|
||||
int i;
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
|
||||
DofTransformation * doftrans = NULL;
|
||||
|
||||
for (i = 0; i < fes->GetNE(); i++)
|
||||
{
|
||||
doftrans->TransformPrimal(vals);
|
||||
doftrans = fes->GetElementVDofs(i, vdofs);
|
||||
vals.SetSize(vdofs.Size());
|
||||
fes->GetFE(i)->Project(vcoeff, *fes->GetElementTransformation(i), vals);
|
||||
if (doftrans)
|
||||
{
|
||||
doftrans->TransformPrimal(vals);
|
||||
}
|
||||
SetSubVector(vdofs, vals);
|
||||
}
|
||||
SetSubVector(vdofs, vals);
|
||||
|
||||
}
|
||||
|
||||
else
|
||||
{
|
||||
// Define and assemble linear form
|
||||
LinearForm b(fes);
|
||||
b.AddDomainIntegrator(new VectorFEDomainLFIntegrator(vcoeff));
|
||||
b.Assemble();
|
||||
|
||||
// Define and assemble bilinear form
|
||||
BilinearForm a(fes);
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator());
|
||||
a.Assemble();
|
||||
|
||||
// Set solver and preconditioner
|
||||
SparseMatrix A(a.SpMat());
|
||||
GSSmoother prec(A);
|
||||
CGSolver cg;
|
||||
cg.SetOperator(A);
|
||||
cg.SetPreconditioner(prec);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(1000);
|
||||
cg.SetPrintLevel(0);
|
||||
|
||||
// Solve and get solution
|
||||
*this = 0.0;
|
||||
cg.Mult(b,*this);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
+4
-2
@@ -387,7 +387,8 @@ public:
|
||||
/** @brief Project @a coeff Coefficient to @a this GridFunction. The
|
||||
projection computation depends on the choice of the FiniteElementSpace
|
||||
#fes. Note that this is usually interpolation at the degrees of freedom
|
||||
in each element (not L2 projection). */
|
||||
in each element (not L2 projection). For NURBS spaces these degrees of
|
||||
freedom are not available and L2 projection is resorted to as fallback. */
|
||||
virtual void ProjectCoefficient(Coefficient &coeff);
|
||||
|
||||
/** @brief Project @a coeff Coefficient to @a this GridFunction, using one
|
||||
@@ -398,7 +399,8 @@ public:
|
||||
/** @brief Project @a vcoeff VectorCoefficient to @a this GridFunction. The
|
||||
projection computation depends on the choice of the FiniteElementSpace
|
||||
#fes. Note that this is usually interpolation at the degrees of freedom
|
||||
in each element (not L2 projection).*/
|
||||
in each element (not L2 projection). For NURBS spaces these degrees of
|
||||
freedom are not available and L2 projection is resorted to as fallback. */
|
||||
void ProjectCoefficient(VectorCoefficient &vcoeff);
|
||||
|
||||
/** @brief Project @a vcoeff VectorCoefficient to @a this GridFunction, using
|
||||
|
||||
+114
@@ -1168,6 +1168,120 @@ void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
|
||||
} // parallel
|
||||
}
|
||||
|
||||
void FindPointsGSLIB::DistributePointInfoToOwningMPIRanks(
|
||||
Array<unsigned int> &recv_elem, Vector &recv_ref,
|
||||
Array<unsigned int> &recv_code)
|
||||
{
|
||||
MFEM_VERIFY(points_cnt,
|
||||
"Invalid size. Please make sure to call FindPoints method "
|
||||
"before calling this function.");
|
||||
|
||||
// Pack data to send via crystal router
|
||||
struct gslib::array *outpt = new gslib::array;
|
||||
|
||||
struct out_pt { double rst[3]; uint index, elem, proc, code; };
|
||||
struct out_pt *pt;
|
||||
array_init(struct out_pt, outpt, points_cnt);
|
||||
outpt->n=points_cnt;
|
||||
pt = (struct out_pt *)outpt->ptr;
|
||||
|
||||
for (int index = 0; index < points_cnt; index++)
|
||||
{
|
||||
pt->index = index;
|
||||
pt->elem = gsl_mfem_elem[index];
|
||||
pt->proc = gsl_proc[index];
|
||||
pt->code = gsl_code[index];
|
||||
for (int d = 0; d < dim; ++d)
|
||||
{
|
||||
pt->rst[d]= gsl_mfem_ref(index*dim + d);
|
||||
}
|
||||
++pt;
|
||||
}
|
||||
|
||||
// Transfer data to target MPI ranks
|
||||
sarray_transfer(struct out_pt, outpt, proc, 1, cr);
|
||||
|
||||
// Store received data
|
||||
const int points_recv = outpt->n;
|
||||
recv_proc.SetSize(points_recv);
|
||||
recv_elem.SetSize(points_recv);
|
||||
recv_index.SetSize(points_recv);
|
||||
recv_code.SetSize(points_recv);
|
||||
recv_ref.SetSize(points_recv*dim);
|
||||
|
||||
pt = (struct out_pt *)outpt->ptr;
|
||||
for (int index = 0; index < points_recv; index++)
|
||||
{
|
||||
recv_index[index] = pt->index;
|
||||
recv_elem[index] = pt->elem;
|
||||
recv_proc[index] = pt->proc;
|
||||
recv_code[index] = pt->code;
|
||||
for (int d = 0; d < dim; ++d)
|
||||
{
|
||||
recv_ref(index*dim + d)= pt->rst[d];
|
||||
}
|
||||
++pt;
|
||||
}
|
||||
|
||||
array_free(outpt);
|
||||
delete outpt;
|
||||
}
|
||||
|
||||
void FindPointsGSLIB::DistributeInterpolatedValues(const Vector &int_vals,
|
||||
const int vdim,
|
||||
const int ordering,
|
||||
Vector &field_out) const
|
||||
{
|
||||
const int points_recv = recv_index.Size();;
|
||||
MFEM_VERIFY(points_recv == 0 ||
|
||||
int_vals.Size() % points_recv == 0,
|
||||
"Incompatible size. Please return interpolated values"
|
||||
"corresponding to points received using"
|
||||
"SendCoordinatesToOwningProcessors.");
|
||||
field_out.SetSize(points_cnt*vdim);
|
||||
|
||||
for (int v = 0; v < vdim; v++)
|
||||
{
|
||||
// Pack data to send via crystal router
|
||||
struct gslib::array *outpt = new gslib::array;
|
||||
struct out_pt { double val; uint index, proc; };
|
||||
struct out_pt *pt;
|
||||
array_init(struct out_pt, outpt, points_recv);
|
||||
outpt->n=points_recv;
|
||||
pt = (struct out_pt *)outpt->ptr;
|
||||
for (int index = 0; index < points_recv; index++)
|
||||
{
|
||||
pt->index = recv_index[index];
|
||||
pt->proc = recv_proc[index];
|
||||
pt->val = ordering == Ordering::byNODES ?
|
||||
int_vals(index + v*points_recv) :
|
||||
int_vals(index*vdim + v);
|
||||
++pt;
|
||||
}
|
||||
|
||||
// Transfer data to target MPI ranks
|
||||
sarray_transfer(struct out_pt, outpt, proc, 1, cr);
|
||||
|
||||
// Store received data
|
||||
MFEM_VERIFY(outpt->n == points_cnt, "Incompatible size. Number of points "
|
||||
"received does not match the number of points originally "
|
||||
"found using FindPoints.");
|
||||
|
||||
pt = (struct out_pt *)outpt->ptr;
|
||||
for (int index = 0; index < points_cnt; index++)
|
||||
{
|
||||
int idx = ordering == Ordering::byNODES ?
|
||||
pt->index + v*points_cnt :
|
||||
pt->index*vdim + v;
|
||||
field_out(idx) = pt->val;
|
||||
++pt;
|
||||
}
|
||||
|
||||
array_free(outpt);
|
||||
delete outpt;
|
||||
}
|
||||
}
|
||||
|
||||
void OversetFindPointsGSLIB::Setup(Mesh &m, const int meshid,
|
||||
GridFunction *gfmax,
|
||||
const double bb_t, const double newt_tol,
|
||||
|
||||
+66
-19
@@ -34,7 +34,7 @@ namespace mfem
|
||||
*
|
||||
* There are three key functions in FindPointsGSLIB:
|
||||
*
|
||||
* 1. Setup - constructs the internal data structures of gslib.
|
||||
* 1. Setup - constructs the internal data structures of gslib. See \ref Setup.
|
||||
*
|
||||
* 2. FindPoints - for any given arbitrary set of points in physical space,
|
||||
* gslib finds the element number, MPI rank, and the reference space
|
||||
@@ -45,12 +45,23 @@ namespace mfem
|
||||
* on an element edge/face or near the domain boundary, and gslib also
|
||||
* returns a distance to the border. Points near (but outside) the domain
|
||||
* boundary must then be marked as not found using the distance returned
|
||||
* by gslib.
|
||||
* by gslib. See \ref FindPoints.
|
||||
*
|
||||
* 3. Interpolate - Interpolates any grid function at the points found using 2.
|
||||
* For functions in L2 finite element space, use \ref SetL2AvgType to
|
||||
* specify how to interpolate values at points located at element boundaries
|
||||
* where the function might be multi-valued. See \ref Interpolate.
|
||||
*
|
||||
* FindPointsGSLIB provides interface to use these functions individually or
|
||||
* using a single call.
|
||||
* FindPointsGSLIB also provides interface to use these functions through a
|
||||
* single call.
|
||||
*
|
||||
* For custom interpolation (e.g., evaluating strain rate tensor), we provide
|
||||
* functions that use gslib to send element index and corresponding
|
||||
* reference-space coordinates for each point to the mpi rank that the element
|
||||
* is located on. Then, custom interpolation can be defined locally by the user
|
||||
* before sending the values back to mpi ranks where the query originated from.
|
||||
* See \ref DistributePointInfoToOwningMPIRanks and
|
||||
* \ref DistributeInterpolatedValues.
|
||||
*/
|
||||
class FindPointsGSLIB
|
||||
{
|
||||
@@ -74,7 +85,8 @@ protected:
|
||||
int dim, points_cnt;
|
||||
Array<unsigned int> gsl_code, gsl_proc, gsl_elem, gsl_mfem_elem;
|
||||
Vector gsl_mesh, gsl_ref, gsl_dist, gsl_mfem_ref;
|
||||
bool setupflag; // flag to indicate whether gslib data has been setup
|
||||
Array<unsigned int> recv_proc, recv_index; // data for custom interpolation
|
||||
bool setupflag; // flag to indicate if gslib data has been setup
|
||||
double default_interp_value; // used for points that are not found in the mesh
|
||||
AvgType avgtype; // average type used for L2 functions
|
||||
Array<int> split_element_map;
|
||||
@@ -118,9 +130,9 @@ public:
|
||||
virtual ~FindPointsGSLIB();
|
||||
|
||||
/** Initializes the internal mesh in gslib, by sending the positions of the
|
||||
Gauss-Lobatto nodes of the input Mesh object @a m.
|
||||
Gauss-Lobatto nodes of the input Mesh object \p m.
|
||||
Note: not tested with periodic (L2).
|
||||
Note: the input mesh @a m must have Nodes set.
|
||||
Note: the input mesh \p m must have Nodes set.
|
||||
|
||||
@param[in] m Input mesh.
|
||||
@param[in] bb_t (Optional) Relative size of bounding box around
|
||||
@@ -133,9 +145,9 @@ public:
|
||||
void Setup(Mesh &m, const double bb_t = 0.1,
|
||||
const double newt_tol = 1.0e-12,
|
||||
const int npt_max = 256);
|
||||
/** Searches positions given in physical space by @a point_pos.
|
||||
/** Searches positions given in physical space by \p point_pos.
|
||||
These positions can be ordered byNodes: (XXX...,YYY...,ZZZ) or
|
||||
byVDim: (XYZ,XYZ,....XYZ) specified by @a point_pos_ordering.
|
||||
byVDim: (XYZ,XYZ,....XYZ) specified by \p point_pos_ordering.
|
||||
This function populates the following member variables:
|
||||
#gsl_code Return codes for each point: inside element (0),
|
||||
element boundary (1), not found (2).
|
||||
@@ -164,20 +176,20 @@ public:
|
||||
/** Interpolation of field values at prescribed reference space positions.
|
||||
@param[in] field_in Function values that will be interpolated on the
|
||||
reference positions. Note: it is assumed that
|
||||
@a field_in is in H1 and in the same space as the
|
||||
\p field_in is in H1 and in the same space as the
|
||||
mesh that was given to Setup().
|
||||
@param[out] field_out Interpolated values. For points that are not found
|
||||
the value is set to #default_interp_value. */
|
||||
virtual void Interpolate(const GridFunction &field_in, Vector &field_out);
|
||||
/** Search positions and interpolate. The ordering (byNODES or byVDIM) of
|
||||
the output values in @a field_out corresponds to the ordering used
|
||||
in the input GridFunction @a field_in. */
|
||||
the output values in \p field_out corresponds to the ordering used
|
||||
in the input GridFunction \p field_in. */
|
||||
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
|
||||
Vector &field_out,
|
||||
int point_pos_ordering = Ordering::byNODES);
|
||||
/** Setup FindPoints, search positions and interpolate. The ordering (byNODES
|
||||
or byVDIM) of the output values in @a field_out corresponds to the
|
||||
ordering used in the input GridFunction @a field_in. */
|
||||
or byVDIM) of the output values in \p field_out corresponds to the
|
||||
ordering used in the input GridFunction \p field_in. */
|
||||
void Interpolate(Mesh &m, const Vector &point_pos,
|
||||
const GridFunction &field_in, Vector &field_out,
|
||||
int point_pos_ordering = Ordering::byNODES);
|
||||
@@ -225,6 +237,41 @@ public:
|
||||
/// Return reference coordinates in [-1,1] (internal range in GSLIB) for each
|
||||
/// point found by FindPoints.
|
||||
virtual const Vector &GetGSLIBReferencePosition() const { return gsl_ref; }
|
||||
|
||||
/** @name Methods to support a custom interpolation procedure.
|
||||
\brief The physical-space point that the user seeks to interpolate at
|
||||
could be located inside an element on another mpi rank.
|
||||
To enable a custom interpolation procedure (e.g., strain tensor computation)
|
||||
we need a mechanism to first send element indices and reference-space
|
||||
coordinates to the mpi-ranks where each point is found. Then the custom
|
||||
interpolation can be done locally by the user before sending the
|
||||
interpolated values back to the mpi-ranks that the query originated from.
|
||||
Example usage looks something like this:
|
||||
|
||||
FindPoints() -> DistributePointInfoToOwningMPIRanks() -> Computation by
|
||||
user -> DistributeInterpolatedValues().
|
||||
*/
|
||||
///@{
|
||||
/// Distribute element indices in #gsl_mfem_elem, the reference coordinates
|
||||
/// #gsl_mfem_ref, and the code #gsl_code to the corresponding mpi-rank
|
||||
/// #gsl_proc for each point. The received information is provided locally
|
||||
/// in \p recv_elem, \p recv_ref (ordered by vdim), and \p recv_code.
|
||||
/// Note: The user can send empty Array/Vectors to the method as they are
|
||||
/// appropriately sized and filled internally.
|
||||
virtual void DistributePointInfoToOwningMPIRanks(
|
||||
Array<unsigned int> &recv_elem, Vector &recv_ref,
|
||||
Array<unsigned int> &recv_code);
|
||||
/// Return interpolated values back to the mpi-ranks #recv_proc that had
|
||||
/// sent the element indices and corresponding reference-space coordinates.
|
||||
/// Specify \p vdim and \p ordering (by nodes or by vdim) based on how the
|
||||
/// \p int_vals are structured. The received values are filled in
|
||||
/// \p field_out consistent with the original ordering of the points that
|
||||
/// were used in \ref FindPoints.
|
||||
virtual void DistributeInterpolatedValues(const Vector &int_vals,
|
||||
const int vdim,
|
||||
const int ordering,
|
||||
Vector &field_out) const;
|
||||
///@}
|
||||
};
|
||||
|
||||
/** \brief OversetFindPointsGSLIB enables use of findpts for arbitrary number of
|
||||
@@ -249,9 +296,9 @@ public:
|
||||
#endif
|
||||
|
||||
/** Initializes the internal mesh in gslib, by sending the positions of the
|
||||
Gauss-Lobatto nodes of the input Mesh object @a m.
|
||||
Gauss-Lobatto nodes of the input Mesh object \p m.
|
||||
Note: not tested with periodic meshes (L2).
|
||||
Note: the input mesh @a m must have Nodes set.
|
||||
Note: the input mesh \p m must have Nodes set.
|
||||
|
||||
@param[in] m Input mesh.
|
||||
@param[in] meshid A unique # for each overlapping mesh. This id is
|
||||
@@ -274,12 +321,12 @@ public:
|
||||
const double bb_t = 0.1, const double newt_tol = 1.0e-12,
|
||||
const int npt_max = 256);
|
||||
|
||||
/** Searches positions given in physical space by @a point_pos. All output
|
||||
/** Searches positions given in physical space by \p point_pos. All output
|
||||
Arrays and Vectors are expected to have the correct size.
|
||||
|
||||
@param[in] point_pos Positions to be found.
|
||||
@param[in] point_id Index of the mesh that the point belongs
|
||||
to (corresponding to @a meshid in Setup).
|
||||
to (corresponding to \p meshid in Setup).
|
||||
@param[in] point_pos_ordering Ordering of the points:
|
||||
byNodes: (XXX...,YYY...,ZZZ) or
|
||||
byVDim: (XYZ,XYZ,....XYZ) */
|
||||
@@ -342,7 +389,7 @@ public:
|
||||
enum GSOp {ADD, MUL, MIN, MAX};
|
||||
|
||||
/// Update the identifiers used for the gather-scatter operator.
|
||||
/// Same @a ids get grouped together and id == 0 does not participate.
|
||||
/// Same \p ids get grouped together and id == 0 does not participate.
|
||||
/// See class description.
|
||||
void UpdateIdentifiers(const Array<long long> &ids);
|
||||
|
||||
|
||||
@@ -14,6 +14,33 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// PA Diffusion Integrator
|
||||
|
||||
DiffusionIntegrator::Kernels DiffusionIntegrator::kernels;
|
||||
DiffusionIntegrator::Kernels::Kernels()
|
||||
{
|
||||
// 2D
|
||||
DiffusionIntegrator::AddSpecialization<2,2,2>();
|
||||
DiffusionIntegrator::AddSpecialization<2,3,3>();
|
||||
DiffusionIntegrator::AddSpecialization<2,4,4>();
|
||||
DiffusionIntegrator::AddSpecialization<2,5,5>();
|
||||
DiffusionIntegrator::AddSpecialization<2,6,6>();
|
||||
DiffusionIntegrator::AddSpecialization<2,7,7>();
|
||||
DiffusionIntegrator::AddSpecialization<2,8,8>();
|
||||
DiffusionIntegrator::AddSpecialization<2,9,9>();
|
||||
// 3D
|
||||
DiffusionIntegrator::AddSpecialization<3,2,2>();
|
||||
DiffusionIntegrator::AddSpecialization<3,2,3>();
|
||||
DiffusionIntegrator::AddSpecialization<3,3,4>();
|
||||
DiffusionIntegrator::AddSpecialization<3,4,5>();
|
||||
DiffusionIntegrator::AddSpecialization<3,4,6>();
|
||||
DiffusionIntegrator::AddSpecialization<3,5,6>();
|
||||
DiffusionIntegrator::AddSpecialization<3,5,8>();
|
||||
DiffusionIntegrator::AddSpecialization<3,6,7>();
|
||||
DiffusionIntegrator::AddSpecialization<3,7,8>();
|
||||
DiffusionIntegrator::AddSpecialization<3,8,9>();
|
||||
}
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
@@ -363,118 +390,6 @@ void OccaPADiffusionSetup3D(const int D1D,
|
||||
}
|
||||
#endif // MFEM_USE_OCCA
|
||||
|
||||
void PADiffusionAssembleDiagonal(const int dim,
|
||||
const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symm,
|
||||
const Array<real_t> &B,
|
||||
const Array<real_t> &G,
|
||||
const Vector &D,
|
||||
Vector &Y)
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x22: return SmemPADiffusionDiagonal2D<2,2,8>(NE,symm,B,G,D,Y);
|
||||
case 0x33: return SmemPADiffusionDiagonal2D<3,3,8>(NE,symm,B,G,D,Y);
|
||||
case 0x44: return SmemPADiffusionDiagonal2D<4,4,4>(NE,symm,B,G,D,Y);
|
||||
case 0x55: return SmemPADiffusionDiagonal2D<5,5,4>(NE,symm,B,G,D,Y);
|
||||
case 0x66: return SmemPADiffusionDiagonal2D<6,6,2>(NE,symm,B,G,D,Y);
|
||||
case 0x77: return SmemPADiffusionDiagonal2D<7,7,2>(NE,symm,B,G,D,Y);
|
||||
case 0x88: return SmemPADiffusionDiagonal2D<8,8,1>(NE,symm,B,G,D,Y);
|
||||
case 0x99: return SmemPADiffusionDiagonal2D<9,9,1>(NE,symm,B,G,D,Y);
|
||||
default: return PADiffusionDiagonal2D(NE,symm,B,G,D,Y,D1D,Q1D);
|
||||
}
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x22: return SmemPADiffusionDiagonal3D<2,2>(NE,symm,B,G,D,Y);
|
||||
case 0x23: return SmemPADiffusionDiagonal3D<2,3>(NE,symm,B,G,D,Y);
|
||||
case 0x34: return SmemPADiffusionDiagonal3D<3,4>(NE,symm,B,G,D,Y);
|
||||
case 0x45: return SmemPADiffusionDiagonal3D<4,5>(NE,symm,B,G,D,Y);
|
||||
case 0x46: return SmemPADiffusionDiagonal3D<4,6>(NE,symm,B,G,D,Y);
|
||||
case 0x56: return SmemPADiffusionDiagonal3D<5,6>(NE,symm,B,G,D,Y);
|
||||
case 0x67: return SmemPADiffusionDiagonal3D<6,7>(NE,symm,B,G,D,Y);
|
||||
case 0x78: return SmemPADiffusionDiagonal3D<7,8>(NE,symm,B,G,D,Y);
|
||||
case 0x89: return SmemPADiffusionDiagonal3D<8,9>(NE,symm,B,G,D,Y);
|
||||
case 0x9A: return SmemPADiffusionDiagonal3D<9,10>(NE,symm,B,G,D,Y);
|
||||
default: return PADiffusionDiagonal3D(NE,symm,B,G,D,Y,D1D,Q1D);
|
||||
}
|
||||
}
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
}
|
||||
|
||||
void PADiffusionApply(const int dim,
|
||||
const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symm,
|
||||
const Array<real_t> &B,
|
||||
const Array<real_t> &G,
|
||||
const Array<real_t> &Bt,
|
||||
const Array<real_t> &Gt,
|
||||
const Vector &D,
|
||||
const Vector &X,
|
||||
Vector &Y)
|
||||
{
|
||||
#ifdef MFEM_USE_OCCA
|
||||
if (DeviceCanUseOcca())
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
OccaPADiffusionApply2D(D1D,Q1D,NE,B,G,Bt,Gt,D,X,Y);
|
||||
return;
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
OccaPADiffusionApply3D(D1D,Q1D,NE,B,G,Bt,Gt,D,X,Y);
|
||||
return;
|
||||
}
|
||||
MFEM_ABORT("OCCA PADiffusionApply unknown kernel!");
|
||||
}
|
||||
#endif // MFEM_USE_OCCA
|
||||
const int id = (D1D << 4) | Q1D;
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x22: return SmemPADiffusionApply2D<2,2,16>(NE,symm,B,G,D,X,Y);
|
||||
case 0x33: return SmemPADiffusionApply2D<3,3,16>(NE,symm,B,G,D,X,Y);
|
||||
case 0x44: return SmemPADiffusionApply2D<4,4,8>(NE,symm,B,G,D,X,Y);
|
||||
case 0x55: return SmemPADiffusionApply2D<5,5,8>(NE,symm,B,G,D,X,Y);
|
||||
case 0x66: return SmemPADiffusionApply2D<6,6,4>(NE,symm,B,G,D,X,Y);
|
||||
case 0x77: return SmemPADiffusionApply2D<7,7,4>(NE,symm,B,G,D,X,Y);
|
||||
case 0x88: return SmemPADiffusionApply2D<8,8,2>(NE,symm,B,G,D,X,Y);
|
||||
case 0x99: return SmemPADiffusionApply2D<9,9,2>(NE,symm,B,G,D,X,Y);
|
||||
default: return PADiffusionApply2D(NE,symm,B,G,Bt,Gt,D,X,Y,D1D,Q1D);
|
||||
}
|
||||
}
|
||||
|
||||
if (dim == 3)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x22: return SmemPADiffusionApply3D<2,2>(NE,symm,B,G,D,X,Y);
|
||||
case 0x23: return SmemPADiffusionApply3D<2,3>(NE,symm,B,G,D,X,Y);
|
||||
case 0x34: return SmemPADiffusionApply3D<3,4>(NE,symm,B,G,D,X,Y);
|
||||
case 0x45: return SmemPADiffusionApply3D<4,5>(NE,symm,B,G,D,X,Y);
|
||||
case 0x46: return SmemPADiffusionApply3D<4,6>(NE,symm,B,G,D,X,Y);
|
||||
case 0x56: return SmemPADiffusionApply3D<5,6>(NE,symm,B,G,D,X,Y);
|
||||
case 0x58: return SmemPADiffusionApply3D<5,8>(NE,symm,B,G,D,X,Y);
|
||||
case 0x67: return SmemPADiffusionApply3D<6,7>(NE,symm,B,G,D,X,Y);
|
||||
case 0x78: return SmemPADiffusionApply3D<7,8>(NE,symm,B,G,D,X,Y);
|
||||
case 0x89: return SmemPADiffusionApply3D<8,9>(NE,symm,B,G,D,X,Y);
|
||||
default: return PADiffusionApply3D(NE,symm,B,G,Bt,Gt,D,X,Y,D1D,Q1D);
|
||||
}
|
||||
}
|
||||
MFEM_ABORT("Unknown kernel: 0x"<<std::hex << id << std::dec);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
void OccaPADiffusionApply2D(const int D1D,
|
||||
const int Q1D,
|
||||
|
||||
@@ -12,6 +12,7 @@
|
||||
#ifndef MFEM_BILININTEG_DIFFUSION_KERNELS_HPP
|
||||
#define MFEM_BILININTEG_DIFFUSION_KERNELS_HPP
|
||||
|
||||
#include "../kernel_dispatch.hpp"
|
||||
#include "../../config/config.hpp"
|
||||
#include "../../general/array.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
@@ -36,7 +37,7 @@ void PADiffusionSetup(const int dim,
|
||||
const Vector &C,
|
||||
Vector &D);
|
||||
|
||||
// PA Diffusion Assemble 2D kernel
|
||||
// PA Diffusion Assemble 2D f
|
||||
template<int T_SDIM>
|
||||
void PADiffusionSetup2D(const int Q1D,
|
||||
const int coeffDim,
|
||||
@@ -151,8 +152,23 @@ inline void PADiffusionDiagonal2D(const int NE,
|
||||
});
|
||||
}
|
||||
|
||||
namespace diffusion
|
||||
{
|
||||
constexpr int ipow(int x, int p) { return p == 0 ? 1 : x*ipow(x, p-1); }
|
||||
constexpr int D11(int x) { return (11 - x)/2; }
|
||||
constexpr int D10(int x) { return (10 - x)/2; }
|
||||
constexpr int NBZApply(int D1D)
|
||||
{
|
||||
return ipow(2, D11(D1D) >= 0 ? D11(D1D) : 0);
|
||||
}
|
||||
constexpr int NBZDiagonal(int D1D)
|
||||
{
|
||||
return ipow(2, D10(D1D) >= 0 ? D10(D1D) : 0);
|
||||
}
|
||||
}
|
||||
|
||||
// Shared memory PA Diffusion Diagonal 2D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void SmemPADiffusionDiagonal2D(const int NE,
|
||||
const bool symmetric,
|
||||
const Array<real_t> &b_,
|
||||
@@ -162,9 +178,10 @@ inline void SmemPADiffusionDiagonal2D(const int NE,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
static constexpr int T_NBZ = diffusion::NBZDiagonal(T_D1D);
|
||||
static constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
const int max_q1d = T_Q1D ? T_Q1D : DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= max_d1d, "");
|
||||
@@ -178,7 +195,6 @@ inline void SmemPADiffusionDiagonal2D(const int NE,
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
MFEM_SHARED real_t BG[2][MQ1*MD1];
|
||||
@@ -628,20 +644,23 @@ inline void PADiffusionApply2D(const int NE,
|
||||
}
|
||||
|
||||
// Shared memory PA Diffusion Apply 2D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void SmemPADiffusionApply2D(const int NE,
|
||||
const bool symmetric,
|
||||
const Array<real_t> &b_,
|
||||
const Array<real_t> &g_,
|
||||
const Array<real_t> &bt_,
|
||||
const Array<real_t> >_,
|
||||
const Vector &d_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
static constexpr int T_NBZ = diffusion::NBZApply(T_D1D);
|
||||
static constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
const int max_q1d = T_Q1D ? T_Q1D : DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= max_d1d, "");
|
||||
@@ -656,7 +675,6 @@ inline void SmemPADiffusionApply2D(const int NE,
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
MFEM_SHARED real_t sBG[2][MQ1*MD1];
|
||||
@@ -984,6 +1002,8 @@ inline void SmemPADiffusionApply3D(const int NE,
|
||||
const bool symmetric,
|
||||
const Array<real_t> &b_,
|
||||
const Array<real_t> &g_,
|
||||
const Array<real_t> &,
|
||||
const Array<real_t> &,
|
||||
const Vector &d_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
@@ -1203,6 +1223,44 @@ inline void SmemPADiffusionApply3D(const int NE,
|
||||
|
||||
} // namespace internal
|
||||
|
||||
namespace
|
||||
{
|
||||
using ApplyKernelType = DiffusionIntegrator::ApplyKernelType;
|
||||
using DiagonalKernelType = DiffusionIntegrator::DiagonalKernelType;
|
||||
}
|
||||
|
||||
template<int DIM, int T_D1D, int T_Q1D>
|
||||
ApplyKernelType DiffusionIntegrator::ApplyPAKernels::Kernel()
|
||||
{
|
||||
if (DIM == 2) { return internal::SmemPADiffusionApply2D<T_D1D,T_Q1D>; }
|
||||
else if (DIM == 3) { return internal::SmemPADiffusionApply3D<T_D1D, T_Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
inline
|
||||
ApplyKernelType DiffusionIntegrator::ApplyPAKernels::Fallback(int DIM, int, int)
|
||||
{
|
||||
if (DIM == 2) { return internal::PADiffusionApply2D; }
|
||||
else if (DIM == 3) { return internal::PADiffusionApply3D; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
template<int DIM, int D1D, int Q1D>
|
||||
DiagonalKernelType DiffusionIntegrator::DiagonalPAKernels::Kernel()
|
||||
{
|
||||
if (DIM == 2) { return internal::SmemPADiffusionDiagonal2D<D1D,Q1D>; }
|
||||
else if (DIM == 3) { return internal::SmemPADiffusionDiagonal3D<D1D, Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
inline DiagonalKernelType
|
||||
DiffusionIntegrator::DiagonalPAKernels::Fallback(int DIM, int, int)
|
||||
{
|
||||
if (DIM == 2) { return internal::PADiffusionDiagonal2D; }
|
||||
else if (DIM == 3) { return internal::PADiffusionDiagonal3D; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
|
||||
@@ -19,6 +19,73 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
void DiffusionIntegrator::AssembleDiagonalPA(Vector &diag)
|
||||
{
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
ceedOp->GetDiagonal(diag);
|
||||
}
|
||||
else
|
||||
{
|
||||
if (pa_data.Size() == 0) { AssemblePA(*fespace); }
|
||||
const Array<real_t> &B = maps->B;
|
||||
const Array<real_t> &G = maps->G;
|
||||
const Vector &Dv = pa_data;
|
||||
DiagonalPAKernels::Run(dim, dofs1D, quad1D, ne, symmetric, B, G, Dv,
|
||||
diag, dofs1D, quad1D);
|
||||
}
|
||||
}
|
||||
|
||||
// PA Diffusion Apply kernel
|
||||
void DiffusionIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
ceedOp->AddMult(x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
const Array<real_t> &B = maps->B;
|
||||
const Array<real_t> &G = maps->G;
|
||||
const Array<real_t> &Bt = maps->Bt;
|
||||
const Array<real_t> &Gt = maps->Gt;
|
||||
const Vector &Dv = pa_data;
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
if (DeviceCanUseOcca())
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
OccaPADiffusionApply2D(dofs1D,quad1D,ne,B,G,Bt,Gt,Dv,x,y);
|
||||
return;
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
OccaPADiffusionApply3D(dofs1D,quad1D,ne,B,G,Bt,Gt,Dv,x,y);
|
||||
return;
|
||||
}
|
||||
MFEM_ABORT("OCCA PADiffusionApply unknown kernel!");
|
||||
}
|
||||
#endif // MFEM_USE_OCCA
|
||||
|
||||
ApplyPAKernels::Run(dim, dofs1D, quad1D, ne, symmetric, B, G, Bt,
|
||||
Gt, Dv, x, y, dofs1D, quad1D);
|
||||
}
|
||||
}
|
||||
|
||||
void DiffusionIntegrator::AddMultTransposePA(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (symmetric)
|
||||
{
|
||||
AddMultPA(x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("DiffusionIntegrator::AddMultTransposePA only implemented in "
|
||||
"the symmetric case.")
|
||||
}
|
||||
}
|
||||
|
||||
void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
{
|
||||
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
|
||||
@@ -98,47 +165,6 @@ void DiffusionIntegrator::AssemblePatchPA(const int patch,
|
||||
SetupPatchPA(patch, mesh); // For full quadrature, unitWeights = false
|
||||
}
|
||||
|
||||
void DiffusionIntegrator::AssembleDiagonalPA(Vector &diag)
|
||||
{
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
ceedOp->GetDiagonal(diag);
|
||||
}
|
||||
else
|
||||
{
|
||||
if (pa_data.Size()==0) { AssemblePA(*fespace); }
|
||||
internal::PADiffusionAssembleDiagonal(dim, dofs1D, quad1D, ne, symmetric,
|
||||
maps->B, maps->G, pa_data, diag);
|
||||
}
|
||||
}
|
||||
|
||||
void DiffusionIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
ceedOp->AddMult(x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
internal::PADiffusionApply(dim, dofs1D, quad1D, ne, symmetric,
|
||||
maps->B, maps->G, maps->Bt, maps->Gt,
|
||||
pa_data, x, y);
|
||||
}
|
||||
}
|
||||
|
||||
void DiffusionIntegrator::AddMultTransposePA(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (symmetric)
|
||||
{
|
||||
AddMultPA(x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("DiffusionIntegrator::AddMultTransposePA only implemented in "
|
||||
"the symmetric case.")
|
||||
}
|
||||
}
|
||||
|
||||
// This version uses full 1D quadrature rules, taking into account the
|
||||
// minimum interaction between basis functions and integration points.
|
||||
void DiffusionIntegrator::AddMultPatchPA(const int patch, const Vector &x,
|
||||
|
||||
@@ -14,78 +14,34 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
MassIntegrator::Kernels MassIntegrator::kernels;
|
||||
MassIntegrator::Kernels::Kernels()
|
||||
{
|
||||
// 2D
|
||||
MassIntegrator::AddSpecialization<2,2,2>();
|
||||
MassIntegrator::AddSpecialization<2,3,3>();
|
||||
MassIntegrator::AddSpecialization<2,4,4>();
|
||||
MassIntegrator::AddSpecialization<2,5,5>();
|
||||
MassIntegrator::AddSpecialization<2,6,6>();
|
||||
MassIntegrator::AddSpecialization<2,7,7>();
|
||||
MassIntegrator::AddSpecialization<2,8,8>();
|
||||
MassIntegrator::AddSpecialization<2,9,9>();
|
||||
// 3D
|
||||
MassIntegrator::AddSpecialization<3,2,2>();
|
||||
MassIntegrator::AddSpecialization<3,2,3>();
|
||||
MassIntegrator::AddSpecialization<3,3,4>();
|
||||
MassIntegrator::AddSpecialization<3,4,5>();
|
||||
MassIntegrator::AddSpecialization<3,4,6>();
|
||||
MassIntegrator::AddSpecialization<3,5,6>();
|
||||
MassIntegrator::AddSpecialization<3,5,8>();
|
||||
MassIntegrator::AddSpecialization<3,6,7>();
|
||||
MassIntegrator::AddSpecialization<3,7,8>();
|
||||
MassIntegrator::AddSpecialization<3,8,9>();
|
||||
}
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
// PA Mass Diagonal 1D kernel
|
||||
static void PAMassAssembleDiagonal1D(const int NE,
|
||||
const Array<real_t> &b,
|
||||
const Vector &d,
|
||||
Vector &y,
|
||||
const int D1D,
|
||||
const int Q1D)
|
||||
{
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto D = Reshape(d.Read(), Q1D, NE);
|
||||
auto Y = Reshape(y.ReadWrite(), D1D, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
Y(dx, e) += B(qx, dx) * B(qx, dx) * D(qx, e);
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void PAMassAssembleDiagonal(const int dim, const int D1D,
|
||||
const int Q1D, const int NE,
|
||||
const Array<real_t> &B,
|
||||
const Vector &D,
|
||||
Vector &Y)
|
||||
{
|
||||
if (dim == 1)
|
||||
{
|
||||
return PAMassAssembleDiagonal1D(NE,B,D,Y,D1D,Q1D);
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x22: return SmemPAMassAssembleDiagonal2D<2,2,16>(NE,B,D,Y);
|
||||
case 0x33: return SmemPAMassAssembleDiagonal2D<3,3,16>(NE,B,D,Y);
|
||||
case 0x44: return SmemPAMassAssembleDiagonal2D<4,4,8>(NE,B,D,Y);
|
||||
case 0x55: return SmemPAMassAssembleDiagonal2D<5,5,8>(NE,B,D,Y);
|
||||
case 0x66: return SmemPAMassAssembleDiagonal2D<6,6,4>(NE,B,D,Y);
|
||||
case 0x77: return SmemPAMassAssembleDiagonal2D<7,7,4>(NE,B,D,Y);
|
||||
case 0x88: return SmemPAMassAssembleDiagonal2D<8,8,2>(NE,B,D,Y);
|
||||
case 0x99: return SmemPAMassAssembleDiagonal2D<9,9,2>(NE,B,D,Y);
|
||||
default: return PAMassAssembleDiagonal2D(NE,B,D,Y,D1D,Q1D);
|
||||
}
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x23: return SmemPAMassAssembleDiagonal3D<2,3>(NE,B,D,Y);
|
||||
case 0x24: return SmemPAMassAssembleDiagonal3D<2,4>(NE,B,D,Y);
|
||||
case 0x26: return SmemPAMassAssembleDiagonal3D<2,6>(NE,B,D,Y);
|
||||
case 0x34: return SmemPAMassAssembleDiagonal3D<3,4>(NE,B,D,Y);
|
||||
case 0x35: return SmemPAMassAssembleDiagonal3D<3,5>(NE,B,D,Y);
|
||||
case 0x45: return SmemPAMassAssembleDiagonal3D<4,5>(NE,B,D,Y);
|
||||
case 0x48: return SmemPAMassAssembleDiagonal3D<4,8>(NE,B,D,Y);
|
||||
case 0x56: return SmemPAMassAssembleDiagonal3D<5,6>(NE,B,D,Y);
|
||||
case 0x67: return SmemPAMassAssembleDiagonal3D<6,7>(NE,B,D,Y);
|
||||
case 0x78: return SmemPAMassAssembleDiagonal3D<7,8>(NE,B,D,Y);
|
||||
case 0x89: return SmemPAMassAssembleDiagonal3D<8,9>(NE,B,D,Y);
|
||||
default: return PAMassAssembleDiagonal3D(NE,B,D,Y,D1D,Q1D);
|
||||
}
|
||||
}
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
void OccaPAMassApply2D(const int D1D,
|
||||
const int Q1D,
|
||||
@@ -176,154 +132,6 @@ void OccaPAMassApply3D(const int D1D,
|
||||
}
|
||||
#endif // MFEM_USE_OCCA
|
||||
|
||||
MFEM_HOST_DEVICE inline
|
||||
void PAMassApply1D_Element(const int e,
|
||||
const int NE,
|
||||
const real_t *b_,
|
||||
const real_t *bt_,
|
||||
const real_t *d_,
|
||||
const real_t *x_,
|
||||
real_t *y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = d1d;
|
||||
const int Q1D = q1d;
|
||||
auto B = ConstDeviceMatrix(b_, Q1D, D1D);
|
||||
auto Bt = ConstDeviceMatrix(bt_, D1D, Q1D);
|
||||
auto D = ConstDeviceMatrix(d_, Q1D, NE);
|
||||
auto X = ConstDeviceMatrix(x_, D1D, NE);
|
||||
auto Y = DeviceMatrix(y_, D1D, NE);
|
||||
|
||||
real_t XQ[DofQuadLimits::MAX_Q1D];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
XQ[qx] = 0.0;
|
||||
}
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
const real_t s = X(dx,e);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
XQ[qx] += B(qx,dx)*s;
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const real_t q = XQ[qx]*D(qx,e);
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
Y(dx,e) += Bt(dx,qx) * q;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// PA Mass Apply 1D kernel
|
||||
static void PAMassApply1D(const int NE,
|
||||
const Array<real_t> &b_,
|
||||
const Array<real_t> &bt_,
|
||||
const Vector &d_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_VERIFY(d1d <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(q1d <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
|
||||
const auto B = b_.Read();
|
||||
const auto Bt = bt_.Read();
|
||||
const auto D = d_.Read();
|
||||
const auto X = x_.Read();
|
||||
auto Y = y_.ReadWrite();
|
||||
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
internal::PAMassApply1D_Element(e, NE, B, Bt, D, X, Y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
void PAMassApply(const int dim,
|
||||
const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const Array<real_t> &B,
|
||||
const Array<real_t> &Bt,
|
||||
const Vector &D,
|
||||
const Vector &X,
|
||||
Vector &Y)
|
||||
{
|
||||
#ifdef MFEM_USE_OCCA
|
||||
if (DeviceCanUseOcca())
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
return OccaPAMassApply2D(D1D,Q1D,NE,B,Bt,D,X,Y);
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
return OccaPAMassApply3D(D1D,Q1D,NE,B,Bt,D,X,Y);
|
||||
}
|
||||
MFEM_ABORT("OCCA PA Mass Apply unknown kernel!");
|
||||
}
|
||||
#endif // MFEM_USE_OCCA
|
||||
const int id = (D1D << 4) | Q1D;
|
||||
|
||||
if (dim == 1)
|
||||
{
|
||||
return PAMassApply1D(NE,B,Bt,D,X,Y,D1D,Q1D);
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x22: return SmemPAMassApply2D<2,2,16>(NE,B,Bt,D,X,Y);
|
||||
case 0x24: return SmemPAMassApply2D<2,4,16>(NE,B,Bt,D,X,Y);
|
||||
case 0x33: return SmemPAMassApply2D<3,3,16>(NE,B,Bt,D,X,Y);
|
||||
case 0x34: return SmemPAMassApply2D<3,4,16>(NE,B,Bt,D,X,Y);
|
||||
case 0x35: return SmemPAMassApply2D<3,5,16>(NE,B,Bt,D,X,Y);
|
||||
case 0x36: return SmemPAMassApply2D<3,6,16>(NE,B,Bt,D,X,Y);
|
||||
case 0x44: return SmemPAMassApply2D<4,4,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x46: return SmemPAMassApply2D<4,6,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x48: return SmemPAMassApply2D<4,8,4>(NE,B,Bt,D,X,Y);
|
||||
case 0x55: return SmemPAMassApply2D<5,5,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x57: return SmemPAMassApply2D<5,7,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x58: return SmemPAMassApply2D<5,8,2>(NE,B,Bt,D,X,Y);
|
||||
case 0x66: return SmemPAMassApply2D<6,6,4>(NE,B,Bt,D,X,Y);
|
||||
case 0x77: return SmemPAMassApply2D<7,7,4>(NE,B,Bt,D,X,Y);
|
||||
case 0x88: return SmemPAMassApply2D<8,8,2>(NE,B,Bt,D,X,Y);
|
||||
case 0x99: return SmemPAMassApply2D<9,9,2>(NE,B,Bt,D,X,Y);
|
||||
default: return PAMassApply2D(NE,B,Bt,D,X,Y,D1D,Q1D);
|
||||
}
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x22: return SmemPAMassApply3D<2,2>(NE,B,Bt,D,X,Y);
|
||||
case 0x23: return SmemPAMassApply3D<2,3>(NE,B,Bt,D,X,Y);
|
||||
case 0x24: return SmemPAMassApply3D<2,4>(NE,B,Bt,D,X,Y);
|
||||
case 0x26: return SmemPAMassApply3D<2,6>(NE,B,Bt,D,X,Y);
|
||||
case 0x34: return SmemPAMassApply3D<3,4>(NE,B,Bt,D,X,Y);
|
||||
case 0x35: return SmemPAMassApply3D<3,5>(NE,B,Bt,D,X,Y);
|
||||
case 0x36: return SmemPAMassApply3D<3,6>(NE,B,Bt,D,X,Y);
|
||||
case 0x37: return SmemPAMassApply3D<3,7>(NE,B,Bt,D,X,Y);
|
||||
case 0x45: return SmemPAMassApply3D<4,5>(NE,B,Bt,D,X,Y);
|
||||
case 0x46: return SmemPAMassApply3D<4,6>(NE,B,Bt,D,X,Y);
|
||||
case 0x48: return SmemPAMassApply3D<4,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x56: return SmemPAMassApply3D<5,6>(NE,B,Bt,D,X,Y);
|
||||
case 0x58: return SmemPAMassApply3D<5,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x67: return SmemPAMassApply3D<6,7>(NE,B,Bt,D,X,Y);
|
||||
case 0x78: return SmemPAMassApply3D<7,8>(NE,B,Bt,D,X,Y);
|
||||
case 0x89: return SmemPAMassApply3D<8,9>(NE,B,Bt,D,X,Y);
|
||||
case 0x9A: return SmemPAMassApply3D<9,10>(NE,B,Bt,D,X,Y);
|
||||
default: return PAMassApply3D(NE,B,Bt,D,X,Y,D1D,Q1D);
|
||||
}
|
||||
}
|
||||
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
}
|
||||
|
||||
} // namespace internal
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -25,11 +25,95 @@ namespace mfem
|
||||
namespace internal
|
||||
{
|
||||
|
||||
void PAMassAssembleDiagonal(const int dim, const int D1D,
|
||||
const int Q1D, const int NE,
|
||||
const Array<real_t> &B,
|
||||
const Vector &D,
|
||||
Vector &Y);
|
||||
// PA Mass Diagonal 1D kernel
|
||||
static void PAMassAssembleDiagonal1D(const int NE,
|
||||
const Array<real_t> &b,
|
||||
const Vector &d,
|
||||
Vector &y,
|
||||
const int D1D,
|
||||
const int Q1D)
|
||||
{
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto D = Reshape(d.Read(), Q1D, NE);
|
||||
auto Y = Reshape(y.ReadWrite(), D1D, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
Y(dx, e) += B(qx, dx) * B(qx, dx) * D(qx, e);
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE inline
|
||||
void PAMassApply1D_Element(const int e,
|
||||
const int NE,
|
||||
const real_t *b_,
|
||||
const real_t *bt_,
|
||||
const real_t *d_,
|
||||
const real_t *x_,
|
||||
real_t *y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = d1d;
|
||||
const int Q1D = q1d;
|
||||
auto B = ConstDeviceMatrix(b_, Q1D, D1D);
|
||||
auto Bt = ConstDeviceMatrix(bt_, D1D, Q1D);
|
||||
auto D = ConstDeviceMatrix(d_, Q1D, NE);
|
||||
auto X = ConstDeviceMatrix(x_, D1D, NE);
|
||||
auto Y = DeviceMatrix(y_, D1D, NE);
|
||||
|
||||
real_t XQ[DofQuadLimits::MAX_Q1D];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
XQ[qx] = 0.0;
|
||||
}
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
const real_t s = X(dx,e);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
XQ[qx] += B(qx,dx)*s;
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const double q = XQ[qx]*D(qx,e);
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
Y(dx,e) += Bt(dx,qx) * q;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// PA Mass Apply 1D kernel
|
||||
static void PAMassApply1D(const int NE,
|
||||
const Array<real_t> &b_,
|
||||
const Array<real_t> &bt_,
|
||||
const Vector &d_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_VERIFY(d1d <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(q1d <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
|
||||
const auto B = b_.Read();
|
||||
const auto Bt = bt_.Read();
|
||||
const auto D = d_.Read();
|
||||
const auto X = x_.Read();
|
||||
auto Y = y_.ReadWrite();
|
||||
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
internal::PAMassApply1D_Element(e, NE, B, Bt, D, X, Y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
// PA Mass Diagonal 2D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
@@ -78,8 +162,18 @@ inline void PAMassAssembleDiagonal2D(const int NE,
|
||||
});
|
||||
}
|
||||
|
||||
namespace mass
|
||||
{
|
||||
constexpr int ipow(int x, int p) { return p == 0 ? 1 : x*ipow(x, p-1); }
|
||||
constexpr int D(int D1D) { return (11 - D1D) / 2; }
|
||||
constexpr int NBZ(int D1D)
|
||||
{
|
||||
return ipow(2, D(D1D) >= 0 ? D(D1D) : 0);
|
||||
}
|
||||
}
|
||||
|
||||
// Shared memory PA Mass Diagonal 2D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void SmemPAMassAssembleDiagonal2D(const int NE,
|
||||
const Array<real_t> &b_,
|
||||
const Vector &d_,
|
||||
@@ -87,9 +181,10 @@ inline void SmemPAMassAssembleDiagonal2D(const int NE,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
static constexpr int T_NBZ = mass::NBZ(T_D1D);
|
||||
static constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
const int max_q1d = T_Q1D ? T_Q1D : DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= max_d1d, "");
|
||||
@@ -102,7 +197,6 @@ inline void SmemPAMassAssembleDiagonal2D(const int NE,
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
MFEM_SHARED real_t B[MQ1][MD1];
|
||||
@@ -302,16 +396,6 @@ inline void SmemPAMassAssembleDiagonal3D(const int NE,
|
||||
});
|
||||
}
|
||||
|
||||
void PAMassApply(const int dim,
|
||||
const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const Array<real_t> &B,
|
||||
const Array<real_t> &Bt,
|
||||
const Vector &D,
|
||||
const Vector &X,
|
||||
Vector &Y);
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
// OCCA PA Mass Apply 2D kernel
|
||||
void OccaPAMassApply2D(const int D1D,
|
||||
@@ -964,7 +1048,7 @@ inline void PAMassApply2D(const int NE,
|
||||
}
|
||||
|
||||
// Shared memory PA Mass Apply 2D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void SmemPAMassApply2D(const int NE,
|
||||
const Array<real_t> &b_,
|
||||
const Array<real_t> &bt_,
|
||||
@@ -975,9 +1059,10 @@ inline void SmemPAMassApply2D(const int NE,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(bt_);
|
||||
static constexpr int T_NBZ = mass::NBZ(T_D1D);
|
||||
static constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
const int max_q1d = T_Q1D ? T_Q1D : DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= max_d1d, "");
|
||||
@@ -988,8 +1073,8 @@ inline void SmemPAMassApply2D(const int NE,
|
||||
auto Y = y_.ReadWrite();
|
||||
mfem::forall_2D_batch(NE, Q1D, Q1D, NBZ, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
internal::SmemPAMassApply2D_Element<T_D1D,T_Q1D,T_NBZ>(e, NE, b, D, x, Y, d1d,
|
||||
q1d);
|
||||
internal::SmemPAMassApply2D_Element<T_D1D,T_Q1D,T_NBZ>(
|
||||
e, NE, b, D, x, Y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
@@ -1049,6 +1134,48 @@ inline void SmemPAMassApply3D(const int NE,
|
||||
|
||||
} // namespace internal
|
||||
|
||||
namespace
|
||||
{
|
||||
using ApplyKernelType = MassIntegrator::ApplyKernelType;
|
||||
using DiagonalKernelType = MassIntegrator::DiagonalKernelType;
|
||||
}
|
||||
|
||||
template<int DIM, int T_D1D, int T_Q1D>
|
||||
ApplyKernelType MassIntegrator::ApplyPAKernels::Kernel()
|
||||
{
|
||||
if (DIM == 1) { return internal::PAMassApply1D; }
|
||||
else if (DIM == 2) { return internal::SmemPAMassApply2D<T_D1D,T_Q1D>; }
|
||||
else if (DIM == 3) { return internal::SmemPAMassApply3D<T_D1D, T_Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
inline ApplyKernelType MassIntegrator::ApplyPAKernels::Fallback(
|
||||
int DIM, int, int)
|
||||
{
|
||||
if (DIM == 1) { return internal::PAMassApply1D; }
|
||||
else if (DIM == 2) { return internal::PAMassApply2D; }
|
||||
else if (DIM == 3) { return internal::PAMassApply3D; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
template<int DIM, int T_D1D, int T_Q1D>
|
||||
DiagonalKernelType MassIntegrator::DiagonalPAKernels::Kernel()
|
||||
{
|
||||
if (DIM == 1) { return internal::PAMassAssembleDiagonal1D; }
|
||||
else if (DIM == 2) { return internal::SmemPAMassAssembleDiagonal2D<T_D1D,T_Q1D>; }
|
||||
else if (DIM == 3) { return internal::SmemPAMassAssembleDiagonal3D<T_D1D, T_Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
inline DiagonalKernelType MassIntegrator::DiagonalPAKernels::Fallback(
|
||||
int DIM, int, int)
|
||||
{
|
||||
if (DIM == 1) { return internal::PAMassAssembleDiagonal1D; }
|
||||
else if (DIM == 2) { return internal::PAMassAssembleDiagonal2D; }
|
||||
else if (DIM == 3) { return internal::PAMassAssembleDiagonal3D; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
|
||||
@@ -19,6 +19,8 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// PA Mass Integrator
|
||||
|
||||
void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
{
|
||||
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
|
||||
@@ -195,8 +197,8 @@ void MassIntegrator::AssembleDiagonalPA(Vector &diag)
|
||||
}
|
||||
else
|
||||
{
|
||||
internal::PAMassAssembleDiagonal(dim, dofs1D, quad1D, ne, maps->B, pa_data,
|
||||
diag);
|
||||
DiagonalPAKernels::Run(dim, dofs1D, quad1D, ne, maps->B, pa_data,
|
||||
diag, dofs1D, quad1D);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -208,8 +210,26 @@ void MassIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
}
|
||||
else
|
||||
{
|
||||
internal::PAMassApply(dim, dofs1D, quad1D, ne, maps->B, maps->Bt, pa_data, x,
|
||||
y);
|
||||
const int D1D = dofs1D;
|
||||
const int Q1D = quad1D;
|
||||
const Array<real_t> &B = maps->B;
|
||||
const Array<real_t> &Bt = maps->Bt;
|
||||
const Vector &D = pa_data;
|
||||
#ifdef MFEM_USE_OCCA
|
||||
if (DeviceCanUseOcca())
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
return OccaPAMassApply2D(D1D,Q1D,ne,B,Bt,D,x,y);
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
return OccaPAMassApply3D(D1D,Q1D,ne,B,Bt,D,x,y);
|
||||
}
|
||||
MFEM_ABORT("OCCA PA Mass Apply unknown kernel!");
|
||||
}
|
||||
#endif // MFEM_USE_OCCA
|
||||
ApplyPAKernels::Run(dim, D1D, Q1D, ne, B, Bt, D, x, y, D1D, Q1D);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
+44
-44
@@ -220,8 +220,8 @@ void MomentFittingIntRules::ComputeSurfaceWeights1D(ElementTransformation& Tr)
|
||||
{
|
||||
IntegrationPoint ip2;
|
||||
ip2.x = .5;
|
||||
while (LvlSet->Eval(Tr, ip2) > 1e-12
|
||||
|| LvlSet->Eval(Tr, ip2) < -1e-12)
|
||||
while (LvlSet->Eval(Tr, ip2) > tol_1
|
||||
|| LvlSet->Eval(Tr, ip2) < -tol_1)
|
||||
{
|
||||
if (LvlSet->Eval(Tr, ip0) * LvlSet->Eval(Tr, ip2) < 0.)
|
||||
{
|
||||
@@ -237,12 +237,12 @@ void MomentFittingIntRules::ComputeSurfaceWeights1D(ElementTransformation& Tr)
|
||||
intp.x = ip2.x;
|
||||
intp.weight = 1. / Tr.Weight();
|
||||
}
|
||||
else if (LvlSet->Eval(Tr, ip0) > 0. && LvlSet->Eval(Tr, ip1) <= 1e-12)
|
||||
else if (LvlSet->Eval(Tr, ip0) > 0. && LvlSet->Eval(Tr, ip1) <= tol_1)
|
||||
{
|
||||
intp.x = 1.;
|
||||
intp.weight = 1. / Tr.Weight();
|
||||
}
|
||||
else if (LvlSet->Eval(Tr, ip1) > 0. && LvlSet->Eval(Tr, ip0) <= 1e-12)
|
||||
else if (LvlSet->Eval(Tr, ip1) > 0. && LvlSet->Eval(Tr, ip0) <= tol_1)
|
||||
{
|
||||
intp.x = 0.;
|
||||
intp.weight = 1. / Tr.Weight();
|
||||
@@ -290,8 +290,8 @@ void MomentFittingIntRules::ComputeVolumeWeights1D(ElementTransformation& Tr,
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (LvlSet->Eval(Tr, ip0) <= -1e-12
|
||||
|| LvlSet->Eval(Tr, ip1) <= -1e-12)
|
||||
else if (LvlSet->Eval(Tr, ip0) <= -tol_1
|
||||
|| LvlSet->Eval(Tr, ip1) <= -tol_1)
|
||||
{
|
||||
for (int ip = 0; ip < ir.GetNPoints(); ip++)
|
||||
{
|
||||
@@ -356,24 +356,24 @@ void MomentFittingIntRules::ComputeSurfaceWeights2D(ElementTransformation& Tr)
|
||||
IntegrationPoint ipB;
|
||||
Trafo.TransformBack(pointB, ipB);
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipB) < -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipB) < -tol_1)
|
||||
{
|
||||
interior = false;
|
||||
}
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) > -1e-12
|
||||
&& LvlSet->Eval(Trafo, ipB) > -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) > -tol_1
|
||||
&& LvlSet->Eval(Trafo, ipB) > -tol_1)
|
||||
{
|
||||
layout = Layout::inside;
|
||||
}
|
||||
else if (LvlSet->Eval(Trafo, ipA) > 1e-15
|
||||
else if (LvlSet->Eval(Trafo, ipA) > tol_2
|
||||
&& LvlSet->Eval(Trafo, ipB) <= 0.)
|
||||
{
|
||||
layout = Layout::intersected;
|
||||
}
|
||||
else if (LvlSet->Eval(Trafo, ipA) <= 0.
|
||||
&& LvlSet->Eval(Trafo, ipB) > 1e-15)
|
||||
&& LvlSet->Eval(Trafo, ipB) > tol_2)
|
||||
{
|
||||
layout = Layout::intersected;
|
||||
Vector temp(pointA.Size());
|
||||
@@ -399,10 +399,10 @@ void MomentFittingIntRules::ComputeSurfaceWeights2D(ElementTransformation& Tr)
|
||||
IntegrationPoint ip;
|
||||
Trafo.TransformBack(mid, ip);
|
||||
|
||||
while (LvlSet->Eval(Trafo, ip) > 1e-12
|
||||
|| LvlSet->Eval(Trafo, ip) < -1e-12)
|
||||
while (LvlSet->Eval(Trafo, ip) > tol_1
|
||||
|| LvlSet->Eval(Trafo, ip) < -tol_1)
|
||||
{
|
||||
if (LvlSet->Eval(Trafo, ip) > 1e-12)
|
||||
if (LvlSet->Eval(Trafo, ip) > tol_1)
|
||||
{
|
||||
pointC = mid;
|
||||
}
|
||||
@@ -539,7 +539,7 @@ void MomentFittingIntRules::ComputeSurfaceWeights2D(ElementTransformation& Tr)
|
||||
temp2 = 0.;
|
||||
for (int i = 0; i < nBasis; i++)
|
||||
{
|
||||
if (SVD.Singularvalue(i) > 1e-12)
|
||||
if (SVD.Singularvalue(i) > tol_1)
|
||||
{
|
||||
temp2(i) = temp(i) / SVD.Singularvalue(i);
|
||||
}
|
||||
@@ -606,24 +606,24 @@ void MomentFittingIntRules::ComputeVolumeWeights2D(ElementTransformation& Tr,
|
||||
IntegrationPoint ipB;
|
||||
Trafo.TransformBack(pointB, ipB);
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipB) < -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipB) < -tol_1)
|
||||
{
|
||||
interior = false;
|
||||
}
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) > -1e-12
|
||||
&& LvlSet->Eval(Trafo, ipB) > -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) > -tol_1
|
||||
&& LvlSet->Eval(Trafo, ipB) > -tol_1)
|
||||
{
|
||||
layout = Layout::inside;
|
||||
}
|
||||
else if (LvlSet->Eval(Trafo, ipA) > 1e-15
|
||||
else if (LvlSet->Eval(Trafo, ipA) > tol_2
|
||||
&& LvlSet->Eval(Trafo, ipB) <= 0.)
|
||||
{
|
||||
layout = Layout::intersected;
|
||||
}
|
||||
else if (LvlSet->Eval(Trafo, ipA) <= 0.
|
||||
&& LvlSet->Eval(Trafo, ipB) > 1e-15)
|
||||
&& LvlSet->Eval(Trafo, ipB) > tol_2)
|
||||
{
|
||||
layout = Layout::intersected;
|
||||
Vector temp(pointA.Size());
|
||||
@@ -648,10 +648,10 @@ void MomentFittingIntRules::ComputeVolumeWeights2D(ElementTransformation& Tr,
|
||||
IntegrationPoint ip;
|
||||
Trafo.TransformBack(mid, ip);
|
||||
|
||||
while (LvlSet->Eval(Trafo, ip) > 1e-12
|
||||
|| LvlSet->Eval(Trafo, ip) < -1e-12)
|
||||
while (LvlSet->Eval(Trafo, ip) > tol_1
|
||||
|| LvlSet->Eval(Trafo, ip) < -tol_1)
|
||||
{
|
||||
if (LvlSet->Eval(Trafo, ip) > 1e-12)
|
||||
if (LvlSet->Eval(Trafo, ip) > tol_1)
|
||||
{
|
||||
pointC = mid;
|
||||
}
|
||||
@@ -786,7 +786,7 @@ void MomentFittingIntRules::ComputeVolumeWeights2D(ElementTransformation& Tr,
|
||||
VolumeSVD->LeftSingularvectors().MultTranspose(RHS, temp);
|
||||
for (int i = 0; i < nBasisVolume; i++)
|
||||
{
|
||||
if (VolumeSVD->Singularvalue(i) > 1e-12)
|
||||
if (VolumeSVD->Singularvalue(i) > tol_1)
|
||||
{
|
||||
temp2(i) = temp(i) / VolumeSVD->Singularvalue(i);
|
||||
}
|
||||
@@ -865,18 +865,18 @@ void MomentFittingIntRules::ComputeSurfaceWeights3D(ElementTransformation& Tr)
|
||||
IntegrationPoint ipD;
|
||||
Trafo.TransformBack(pointD, ipD);
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipB) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipC) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipD) < -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipB) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipC) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipD) < -tol_1)
|
||||
{
|
||||
interior = false;
|
||||
}
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) > -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipB) > -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipC) > -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipD) > -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) > -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipB) > -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipC) > -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipD) > -tol_1)
|
||||
{
|
||||
element_int = true;
|
||||
}
|
||||
@@ -978,7 +978,7 @@ void MomentFittingIntRules::ComputeSurfaceWeights3D(ElementTransformation& Tr)
|
||||
temp2 = 0.;
|
||||
for (int i = 0; i < nBasis; i++)
|
||||
{
|
||||
if (SVD.Singularvalue(i) > 1e-12)
|
||||
if (SVD.Singularvalue(i) > tol_1)
|
||||
{
|
||||
temp2(i) = temp(i) / SVD.Singularvalue(i);
|
||||
}
|
||||
@@ -1047,18 +1047,18 @@ void MomentFittingIntRules::ComputeVolumeWeights3D(ElementTransformation& Tr,
|
||||
IntegrationPoint ipD;
|
||||
Trafo.TransformBack(pointD, ipD);
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipB) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipC) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipD) < -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipB) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipC) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipD) < -tol_1)
|
||||
{
|
||||
interior = false;
|
||||
}
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) > -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipB) > -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipC) > -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipD) > -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) > -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipB) > -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipC) > -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipD) > -tol_1)
|
||||
{
|
||||
element_int = true;
|
||||
}
|
||||
@@ -1159,7 +1159,7 @@ void MomentFittingIntRules::ComputeVolumeWeights3D(ElementTransformation& Tr,
|
||||
VolumeSVD->LeftSingularvectors().MultTranspose(RHS, temp);
|
||||
temp2 = 0.;
|
||||
for (int i = 0; i < nBasisVolume; i++)
|
||||
if (VolumeSVD->Singularvalue(i) > 1e-12)
|
||||
if (VolumeSVD->Singularvalue(i) > tol_1)
|
||||
{
|
||||
temp2(i) = temp(i) / VolumeSVD->Singularvalue(i);
|
||||
}
|
||||
|
||||
@@ -36,6 +36,17 @@ protected:
|
||||
/// Space order for the LS projection.
|
||||
int lsOrder;
|
||||
|
||||
/// @name Tolerances used for point comparisons
|
||||
///@{
|
||||
#ifdef MFEM_USE_DOUBLE
|
||||
static constexpr real_t tol_1 = 1e-12;
|
||||
static constexpr real_t tol_2 = 1e-15;
|
||||
#elif defined(MFEM_USE_SINGLE)
|
||||
static constexpr real_t tol_1 = 1e-5;
|
||||
static constexpr real_t tol_2 = 1e-7;
|
||||
#endif
|
||||
///@}
|
||||
|
||||
/** @brief Constructor to set up the generated cut IntegrationRules.
|
||||
|
||||
@param [in] order Order of the constructed IntegrationRule.
|
||||
|
||||
@@ -0,0 +1,183 @@
|
||||
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_KERNEL_DISPATCH_HPP
|
||||
#define MFEM_KERNEL_DISPATCH_HPP
|
||||
|
||||
#include "../config/config.hpp"
|
||||
#include "kernel_reporter.hpp"
|
||||
#include <unordered_map>
|
||||
#include <tuple>
|
||||
#include <cstddef>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// The MFEM_REGISTER_KERNELS macro registers kernels for runtime dispatch using
|
||||
// a dispatch map.
|
||||
//
|
||||
// This creates a dispatch table (a static member variable) named @a KernelName
|
||||
// containing function points of type @a KernelType. These are followed by one
|
||||
// or two sets of parenthesized argument types.
|
||||
//
|
||||
// The first set of argument types contains the types that are used to dispatch
|
||||
// to either specialized or fallback kernels. The second set of argument types
|
||||
// can be used to further specialize the kernel without participating in
|
||||
// dispatch (a canonical example is NBZ, determining the size of the thread
|
||||
// blocks; this is required to specialize kernels for optimal performance, but
|
||||
// is not relevant for dispatch).
|
||||
//
|
||||
// After calling this macro, the user must implement the Kernel and Fallback
|
||||
// static member functions, which return pointers to the appropriate kernel
|
||||
// functions depending on the parameters.
|
||||
//
|
||||
// Specialized functions can be registered using the static AddSpecialization
|
||||
// member function.
|
||||
|
||||
#define MFEM_EXPAND(X) X // Workaround needed for MSVC compiler
|
||||
|
||||
#define MFEM_REGISTER_KERNELS(KernelName, KernelType, ...) \
|
||||
MFEM_EXPAND(MFEM_EXPAND(MFEM_REGISTER_KERNELS_N(__VA_ARGS__,2,1,)) \
|
||||
(KernelName,KernelType,__VA_ARGS__))
|
||||
|
||||
#define MFEM_REGISTER_KERNELS_N(_1, _2, N, ...) MFEM_REGISTER_KERNELS_##N
|
||||
|
||||
// Expands a variable length macro parameter so that multiple variable length
|
||||
// parameters can be passed to the same macro.
|
||||
#define MFEM_PARAM_LIST(...) __VA_ARGS__
|
||||
|
||||
// Version of MFEM_REGISTER_KERNELS without any "optional" (non-dispatch)
|
||||
// parameters.
|
||||
#define MFEM_REGISTER_KERNELS_1(KernelName, KernelType, Params) \
|
||||
MFEM_REGISTER_KERNELS_(KernelName, KernelType, Params, (), Params)
|
||||
|
||||
// Version of MFEM_REGISTER_KERNELS without any optional (non-dispatch)
|
||||
// parameters (e.g. NBZ).
|
||||
#define MFEM_REGISTER_KERNELS_2(KernelName, KernelType, Params, OptParams) \
|
||||
MFEM_REGISTER_KERNELS_(KernelName, KernelType, Params, OptParams, \
|
||||
(MFEM_PARAM_LIST Params, MFEM_PARAM_LIST OptParams))
|
||||
|
||||
// P1 are the parameters, P2 are the optional (non-dispatch parameters), and P3
|
||||
// is the concatenation of P1 and P2. We need to pass it as a separate argument
|
||||
// to avoid a trailing comma in the case that P2 is empty.
|
||||
#define MFEM_REGISTER_KERNELS_(KernelName, KernelType, P1, P2, P3) \
|
||||
class KernelName : public \
|
||||
KernelDispatchTable<KernelName, KernelType, \
|
||||
internal::KernelTypeList<MFEM_PARAM_LIST P1>, \
|
||||
internal::KernelTypeList<MFEM_PARAM_LIST P2>> \
|
||||
{ \
|
||||
public: \
|
||||
const char *kernel_name = MFEM_KERNEL_NAME(KernelName); \
|
||||
using KernelSignature = KernelType; \
|
||||
template <MFEM_PARAM_LIST P3> \
|
||||
static KernelSignature Kernel(); \
|
||||
static KernelSignature Fallback(MFEM_PARAM_LIST P1); \
|
||||
static KernelName &Get() \
|
||||
{ static KernelName table; return table;} \
|
||||
}
|
||||
|
||||
/// @brief Hashes variadic packs for which each type contained in the variadic
|
||||
/// pack has a specialization of `std::hash` available.
|
||||
///
|
||||
/// For example, packs containing int, bool, enum values, etc.
|
||||
template<typename ...KernelParameters>
|
||||
struct KernelDispatchKeyHash
|
||||
{
|
||||
private:
|
||||
template<int N>
|
||||
size_t operator()(std::tuple<KernelParameters...> value) const { return 0; }
|
||||
|
||||
// The hashing formula here is taken directly from the Boost library, with
|
||||
// the magic number 0x9e3779b9 chosen to minimize hashing collisions.
|
||||
template<std::size_t N, typename THead, typename... TTail>
|
||||
size_t operator()(std::tuple<KernelParameters...> value) const
|
||||
{
|
||||
constexpr int Index = N - sizeof...(TTail) - 1;
|
||||
auto lhs_hash = std::hash<THead>()(std::get<Index>(value));
|
||||
auto rhs_hash = operator()<N, TTail...>(value);
|
||||
return lhs_hash^(rhs_hash + 0x9e3779b9 + (lhs_hash<<6) + (lhs_hash>>2));
|
||||
}
|
||||
public:
|
||||
/// Returns the hash of the given @a value.
|
||||
size_t operator()(std::tuple<KernelParameters...> value) const
|
||||
{
|
||||
return operator()<sizeof...(KernelParameters),KernelParameters...>(value);
|
||||
}
|
||||
};
|
||||
|
||||
namespace internal { template<typename... Types> struct KernelTypeList { }; }
|
||||
|
||||
template<typename... T> class KernelDispatchTable { };
|
||||
|
||||
template <typename Kernels,
|
||||
typename Signature,
|
||||
typename... Params,
|
||||
typename... OptParams>
|
||||
class KernelDispatchTable<Kernels,
|
||||
Signature,
|
||||
internal::KernelTypeList<Params...>,
|
||||
internal::KernelTypeList<OptParams...>>
|
||||
{
|
||||
std::unordered_map<std::tuple<Params...>,
|
||||
Signature,
|
||||
KernelDispatchKeyHash<Params...>> table;
|
||||
|
||||
public:
|
||||
/// @brief Run the kernel with the given dispatch parameters and arguments.
|
||||
///
|
||||
/// If a compile-time specialized version of the kernel with the given
|
||||
/// parameters has been registered, it will be called. Otherwise, the
|
||||
/// fallback kernel will be called.
|
||||
template<typename... Args>
|
||||
static void Run(Params... params, Args&&... args)
|
||||
{
|
||||
const auto &table = Kernels::Get().table;
|
||||
const std::tuple<Params...> key = std::make_tuple(params...);
|
||||
const auto it = table.find(key);
|
||||
if (it != table.end())
|
||||
{
|
||||
it->second(std::forward<Args>(args)...);
|
||||
}
|
||||
else
|
||||
{
|
||||
ReportFallback(Kernels::Get().kernel_name, params...);
|
||||
Kernels::Fallback(params...)(std::forward<Args>(args)...);
|
||||
}
|
||||
}
|
||||
|
||||
/// Register a specialized kernel for dispatch.
|
||||
template <Params... PARAMS>
|
||||
struct Specialization
|
||||
{
|
||||
// Version without optional parameters
|
||||
static void Add()
|
||||
{
|
||||
std::tuple<Params...> param_tuple(PARAMS...);
|
||||
Kernels::Get().table[param_tuple] =
|
||||
Kernels:: template Kernel<PARAMS...>();
|
||||
};
|
||||
// Version with optional parameters
|
||||
template <OptParams... OPT_PARAMS>
|
||||
struct Opt
|
||||
{
|
||||
static void Add()
|
||||
{
|
||||
std::tuple<Params...> param_tuple(PARAMS...);
|
||||
Kernels::Get().table[param_tuple] =
|
||||
Kernels:: template Kernel<PARAMS..., OPT_PARAMS...>();
|
||||
}
|
||||
};
|
||||
};
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,82 @@
|
||||
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_KERNEL_REPORTER_HPP
|
||||
#define MFEM_KERNEL_REPORTER_HPP
|
||||
|
||||
#include "../config/config.hpp"
|
||||
|
||||
#ifdef MFEM_REPORT_KERNELS
|
||||
|
||||
#include "../general/globals.hpp"
|
||||
#include <set>
|
||||
#include <sstream>
|
||||
#include <string>
|
||||
|
||||
#define MFEM_STR_(X) #X
|
||||
#define MFEM_STR(X) MFEM_STR_(X)
|
||||
#define MFEM_KERNEL_NAME(KernelName) \
|
||||
__FILE__ ":" MFEM_STR(__LINE__) " : " #KernelName
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace
|
||||
{
|
||||
|
||||
template <typename Last>
|
||||
static void Stringify_(std::ostream &o, Last &&arg)
|
||||
{
|
||||
o << arg;
|
||||
}
|
||||
|
||||
template <typename T1, typename T2, typename... Rest>
|
||||
static void Stringify_(std::ostream &o, T1 &&a1, T2 &&a2, Rest&&... rest)
|
||||
{
|
||||
o << int(a1) << ",";
|
||||
Stringify_(o, a2, rest...);
|
||||
}
|
||||
|
||||
template <typename... Args>
|
||||
static std::string Stringify(Args&&... args)
|
||||
{
|
||||
std::stringstream o;
|
||||
Stringify_(o, args...);
|
||||
return o.str();
|
||||
}
|
||||
|
||||
} // namespace
|
||||
|
||||
template <typename... Params>
|
||||
void ReportFallback(const std::string &kernel_name, Params&&... params)
|
||||
{
|
||||
static std::set<std::string> reported_fallbacks;
|
||||
const std::string requested_kernel =
|
||||
kernel_name + "<" + Stringify(params...) + ">";
|
||||
if (reported_fallbacks.find(requested_kernel) == reported_fallbacks.end())
|
||||
{
|
||||
reported_fallbacks.insert(requested_kernel);
|
||||
mfem::err << "Fallback kernel. Requested "
|
||||
<< requested_kernel << std::endl;
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#else // #ifdef MFEM_REPORT_KERNELS
|
||||
|
||||
// No-op
|
||||
#define MFEM_KERNEL_NAME(KernelName) ""
|
||||
template <typename... T> void ReportFallback(T&&...) { }
|
||||
|
||||
#endif
|
||||
|
||||
#endif
|
||||
+64
-83
@@ -27,12 +27,16 @@ namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
static void Det1D(const int NE,
|
||||
const real_t *b,
|
||||
const real_t *g,
|
||||
const real_t *x,
|
||||
real_t *y,
|
||||
const int d1d,
|
||||
const int q1d)
|
||||
const int q1d,
|
||||
Vector *d_buff = nullptr)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(b);
|
||||
MFEM_CONTRACT_VAR(d_buff);
|
||||
const auto G = Reshape(g, q1d, d1d);
|
||||
const auto X = Reshape(x, d1d, NE);
|
||||
|
||||
@@ -59,8 +63,10 @@ static void Det2D(const int NE,
|
||||
const real_t *x,
|
||||
real_t *y,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
const int q1d = 0,
|
||||
Vector *d_buff = nullptr)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(d_buff);
|
||||
static constexpr int SDIM = 2;
|
||||
static constexpr int NBZ = 1;
|
||||
|
||||
@@ -109,8 +115,11 @@ static void Det2DSurface(const int NE,
|
||||
const real_t *x,
|
||||
real_t *y,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
const int q1d = 0,
|
||||
Vector *d_buff = nullptr)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(d_buff);
|
||||
|
||||
static constexpr int SDIM = 3;
|
||||
static constexpr int NBZ = 1;
|
||||
|
||||
@@ -272,91 +281,63 @@ static void Det3D(const int NE,
|
||||
});
|
||||
}
|
||||
|
||||
// Tensor-product evaluation of quadrature point determinants: dispatch
|
||||
// function.
|
||||
void TensorDeterminants(const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_det,
|
||||
Vector &d_buff)
|
||||
void InitDetKernels()
|
||||
{
|
||||
if (NE == 0) { return; }
|
||||
const int dim = maps.FE->GetDim();
|
||||
const int D1D = maps.ndof;
|
||||
const int Q1D = maps.nqpt;
|
||||
const real_t *B = maps.B.Read();
|
||||
const real_t *G = maps.G.Read();
|
||||
const real_t *X = e_vec.Read();
|
||||
real_t *Y = q_det.Write();
|
||||
|
||||
const int id = (vdim<<8) | (D1D<<4) | Q1D;
|
||||
|
||||
if (dim == 1)
|
||||
{
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D,
|
||||
"Orders higher than " << DeviceDofQuadLimits::Get().MAX_D1D-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D,
|
||||
"Quadrature rules with more than "
|
||||
<< DeviceDofQuadLimits::Get().MAX_Q1D << " 1D points are not supported!");
|
||||
Det1D(NE, G, X, Y, D1D, Q1D);
|
||||
return;
|
||||
}
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x222: return Det2D<2,2>(NE,B,G,X,Y);
|
||||
case 0x223: return Det2D<2,3>(NE,B,G,X,Y);
|
||||
case 0x224: return Det2D<2,4>(NE,B,G,X,Y);
|
||||
case 0x226: return Det2D<2,6>(NE,B,G,X,Y);
|
||||
case 0x234: return Det2D<3,4>(NE,B,G,X,Y);
|
||||
case 0x236: return Det2D<3,6>(NE,B,G,X,Y);
|
||||
case 0x244: return Det2D<4,4>(NE,B,G,X,Y);
|
||||
case 0x246: return Det2D<4,6>(NE,B,G,X,Y);
|
||||
case 0x256: return Det2D<5,6>(NE,B,G,X,Y);
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
|
||||
<< MQ << " 1D points are not supported!");
|
||||
if (vdim == 2) { Det2D(NE,B,G,X,Y,D1D,Q1D); }
|
||||
else if (vdim == 3) { Det2DSurface(NE,B,G,X,Y,D1D,Q1D); }
|
||||
else { MFEM_ABORT("Invalid space dimension."); }
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x324: return Det3D<2,4>(NE,B,G,X,Y);
|
||||
case 0x333: return Det3D<3,3>(NE,B,G,X,Y);
|
||||
case 0x335: return Det3D<3,5>(NE,B,G,X,Y);
|
||||
case 0x336: return Det3D<3,6>(NE,B,G,X,Y);
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_DET_1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_DET_1D;
|
||||
// Highest orders that fit in shared memory
|
||||
if (D1D <= MD && Q1D <= MQ)
|
||||
{ return Det3D<0,0,true>(NE,B,G,X,Y,D1D,Q1D); }
|
||||
// Last fall-back will use global memory
|
||||
return Det3D<0,0,false>(
|
||||
NE,B,G,X,Y,D1D,Q1D,&d_buff);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_ABORT("Kernel " << std::hex << id << std::dec << " not supported yet");
|
||||
using k = QuadratureInterpolator::DetKernels;
|
||||
// 2D
|
||||
k::Specialization<2,2,2,2>::Add();
|
||||
k::Specialization<2,2,2,3>::Add();
|
||||
k::Specialization<2,2,2,4>::Add();
|
||||
k::Specialization<2,2,2,6>::Add();
|
||||
k::Specialization<2,2,3,4>::Add();
|
||||
k::Specialization<2,2,3,6>::Add();
|
||||
k::Specialization<2,2,4,4>::Add();
|
||||
k::Specialization<2,2,4,6>::Add();
|
||||
k::Specialization<2,2,5,6>::Add();
|
||||
// 3D
|
||||
k::Specialization<3,3,2,4>::Add();
|
||||
k::Specialization<3,3,3,3>::Add();
|
||||
k::Specialization<3,3,3,5>::Add();
|
||||
k::Specialization<3,3,3,6>::Add();
|
||||
}
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
|
||||
} // namespace internal
|
||||
|
||||
/// @cond Suppress_Doxygen_warnings
|
||||
|
||||
namespace
|
||||
{
|
||||
using DetKernel = QuadratureInterpolator::DetKernelType;
|
||||
}
|
||||
|
||||
template<int DIM, int SDIM, int D1D, int Q1D>
|
||||
DetKernel QuadratureInterpolator::DetKernels::Kernel()
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::Det1D; }
|
||||
else if (DIM == 2 && SDIM == 2) { return internal::quadrature_interpolator::Det2D<D1D, Q1D>; }
|
||||
else if (DIM == 2 && SDIM == 3) { return internal::quadrature_interpolator::Det2DSurface<D1D, Q1D>; }
|
||||
else if (DIM == 3) { return internal::quadrature_interpolator::Det3D<D1D, Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
DetKernel QuadratureInterpolator::DetKernels::Fallback(
|
||||
int DIM, int SDIM, int D1D, int Q1D)
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::Det1D; }
|
||||
else if (DIM == 2 && SDIM == 2) { return internal::quadrature_interpolator::Det2D; }
|
||||
else if (DIM == 2 && SDIM == 3) { return internal::quadrature_interpolator::Det2DSurface; }
|
||||
else if (DIM == 3)
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_DET_1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_DET_1D;
|
||||
if (D1D <= MD && Q1D <= MQ) { return internal::quadrature_interpolator::Det3D<0,0,true>; }
|
||||
else { return internal::quadrature_interpolator::Det3D<0,0,false>; }
|
||||
}
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
/// @endcond
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -1,64 +0,0 @@
|
||||
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
// Internal header, included only by .cpp files
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
// Tensor-product evaluation of quadrature point values: dispatch function.
|
||||
template<QVectorLayout VL>
|
||||
void TensorValues(const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_val);
|
||||
|
||||
// Tensor-product evaluation of quadrature point derivatives: dispatch function.
|
||||
template<QVectorLayout VL>
|
||||
void TensorDerivatives(const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_der);
|
||||
|
||||
// Tensor-product evaluation of quadrature point physical derivatives: dispatch
|
||||
// function.
|
||||
template<QVectorLayout VL>
|
||||
void TensorPhysDerivatives(const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const GeometricFactors &geom,
|
||||
const Vector &e_vec,
|
||||
Vector &q_der);
|
||||
|
||||
// Tensor-product evaluation of quadrature point determinants: dispatch
|
||||
// function.
|
||||
void TensorDeterminants(const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_det,
|
||||
Vector &d_buff);
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
|
||||
} // namespace internal
|
||||
|
||||
} // namespace mfem
|
||||
+21
-1
@@ -12,6 +12,9 @@
|
||||
// Internal header, included only by .cpp files.
|
||||
// Template function implementations.
|
||||
|
||||
#ifndef MFEM_QUADINTERP_EVAL
|
||||
#define MFEM_QUADINTERP_EVAL
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../../linalg/dtensor.hpp"
|
||||
@@ -63,7 +66,7 @@ static void Values1D(const int NE,
|
||||
// Template compute kernel for Values in 2D: tensor product version.
|
||||
template<QVectorLayout Q_LAYOUT,
|
||||
int T_VDIM = 0, int T_D1D = 0, int T_Q1D = 0,
|
||||
int T_NBZ = 1, int MAX_D1D = 0, int MAX_Q1D = 0>
|
||||
int T_NBZ = 1>
|
||||
static void Values2D(const int NE,
|
||||
const real_t *b_,
|
||||
const real_t *x_,
|
||||
@@ -193,4 +196,21 @@ static void Values3D(const int NE,
|
||||
|
||||
} // namespace internal
|
||||
|
||||
/// @cond Suppress_Doxygen_warnings
|
||||
|
||||
template<int DIM, QVectorLayout Q_LAYOUT,
|
||||
int VDIM, int D1D, int Q1D, int NBZ>
|
||||
QuadratureInterpolator::TensorEvalKernelType
|
||||
QuadratureInterpolator::TensorEvalKernels::Kernel()
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::Values1D<Q_LAYOUT>; }
|
||||
else if (DIM == 2) { return internal::quadrature_interpolator::Values2D<Q_LAYOUT, VDIM, D1D, Q1D, NBZ>; }
|
||||
else if (DIM == 3) { return internal::quadrature_interpolator::Values3D<Q_LAYOUT, VDIM, D1D, Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
/// @endcond
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
|
||||
+47
-115
@@ -10,143 +10,75 @@
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "dispatch.hpp"
|
||||
#include "eval.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
// Tensor-product evaluation of quadrature point values: dispatch function.
|
||||
// Instantiation for the case QVectorLayout::byNODES.
|
||||
template<>
|
||||
void TensorValues<QVectorLayout::byNODES>(const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_val)
|
||||
void InitEvalByNodesKernels()
|
||||
{
|
||||
if (NE == 0) { return; }
|
||||
const int dim = maps.FE->GetDim();
|
||||
const int D1D = maps.ndof;
|
||||
const int Q1D = maps.nqpt;
|
||||
const real_t *B = maps.B.Read();
|
||||
const real_t *X = e_vec.Read();
|
||||
real_t *Y = q_val.Write();
|
||||
using k = QuadratureInterpolator::TensorEvalKernels;
|
||||
|
||||
constexpr QVectorLayout L = QVectorLayout::byNODES;
|
||||
// 2D
|
||||
k::Specialization<2,QVectorLayout::byNODES,1,3,3>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,1,2,4>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,1,3,2>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,1,3,4>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,1,4,3>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,1,4,4>::Opt<1>::Add();
|
||||
|
||||
const int id = (vdim<<8) | (D1D<<4) | Q1D;
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,2,2>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,2,3>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,2,4>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,2,5>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,2,6>::Opt<1>::Add();
|
||||
|
||||
if (dim == 1)
|
||||
{
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D,
|
||||
"Orders higher than " << DeviceDofQuadLimits::Get().MAX_D1D-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D,
|
||||
"Quadrature rules with more than "
|
||||
<< DeviceDofQuadLimits::Get().MAX_Q1D << " 1D points are not supported!");
|
||||
Values1D<L>(NE, B, X, Y, vdim, D1D, Q1D);
|
||||
return;
|
||||
}
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x133: return Values2D<L,1,3,3>(NE,B,X,Y);
|
||||
case 0x124: return Values2D<L,1,2,4>(NE,B,X,Y);
|
||||
case 0x132: return Values2D<L,1,3,2>(NE,B,X,Y);
|
||||
case 0x134: return Values2D<L,1,3,4>(NE,B,X,Y);
|
||||
case 0x143: return Values2D<L,1,4,3>(NE,B,X,Y);
|
||||
case 0x144: return Values2D<L,1,4,4>(NE,B,X,Y);
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,3,3>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,3,4>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,3,6>::Opt<1>::Add();
|
||||
|
||||
case 0x222: return Values2D<L,2,2,2>(NE,B,X,Y);
|
||||
case 0x223: return Values2D<L,2,2,3>(NE,B,X,Y);
|
||||
case 0x224: return Values2D<L,2,2,4>(NE,B,X,Y);
|
||||
case 0x225: return Values2D<L,2,2,5>(NE,B,X,Y);
|
||||
case 0x226: return Values2D<L,2,2,6>(NE,B,X,Y);
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,4,3>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,4,4>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,4,5>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,4,6>::Opt<1>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,4,7>::Opt<1>::Add();
|
||||
|
||||
case 0x233: return Values2D<L,2,3,3>(NE,B,X,Y);
|
||||
case 0x234: return Values2D<L,2,3,4>(NE,B,X,Y);
|
||||
case 0x236: return Values2D<L,2,3,6>(NE,B,X,Y);
|
||||
k::Specialization<2,QVectorLayout::byNODES,2,5,6>::Opt<1>::Add();
|
||||
|
||||
case 0x243: return Values2D<L,2,4,3>(NE,B,X,Y);
|
||||
case 0x244: return Values2D<L,2,4,4>(NE,B,X,Y);
|
||||
case 0x245: return Values2D<L,2,4,5>(NE,B,X,Y);
|
||||
case 0x246: return Values2D<L,2,4,6>(NE,B,X,Y);
|
||||
case 0x247: return Values2D<L,2,4,7>(NE,B,X,Y);
|
||||
// 3D
|
||||
k::Specialization<3,QVectorLayout::byNODES,1,2,4>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,1,3,3>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,1,3,4>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,1,3,6>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,1,4,3>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,1,4,4>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,1,4,8>::Opt<1>::Add();
|
||||
|
||||
case 0x256: return Values2D<L,2,5,6>(NE,B,X,Y);
|
||||
k::Specialization<3,QVectorLayout::byNODES,2,2,2>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,2,2,3>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,2,3,4>::Opt<1>::Add();
|
||||
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
|
||||
<< MQ << " 1D points are not supported!");
|
||||
Values2D<L>(NE,B,X,Y,vdim,D1D,Q1D);
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x124: return Values3D<L,1,2,4>(NE,B,X,Y);
|
||||
case 0x133: return Values3D<L,1,3,3>(NE,B,X,Y);
|
||||
case 0x134: return Values3D<L,1,3,4>(NE,B,X,Y);
|
||||
case 0x136: return Values3D<L,1,3,6>(NE,B,X,Y);
|
||||
case 0x143: return Values3D<L,1,4,3>(NE,B,X,Y);
|
||||
case 0x144: return Values3D<L,1,4,4>(NE,B,X,Y);
|
||||
case 0x148: return Values3D<L,1,4,8>(NE,B,X,Y);
|
||||
k::Specialization<3,QVectorLayout::byNODES,3,2,3>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,3,2,4>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,3,2,5>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,3,2,6>::Opt<1>::Add();
|
||||
|
||||
case 0x222: return Values3D<L,2,2,2>(NE,B,X,Y);
|
||||
case 0x223: return Values3D<L,2,2,3>(NE,B,X,Y);
|
||||
case 0x234: return Values3D<L,2,3,4>(NE,B,X,Y);
|
||||
k::Specialization<3,QVectorLayout::byNODES,3,3,3>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,3,3,4>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,3,3,5>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,3,3,6>::Opt<1>::Add();
|
||||
|
||||
case 0x323: return Values3D<L,3,2,3>(NE,B,X,Y);
|
||||
case 0x324: return Values3D<L,3,2,4>(NE,B,X,Y);
|
||||
case 0x325: return Values3D<L,3,2,5>(NE,B,X,Y);
|
||||
case 0x326: return Values3D<L,3,2,6>(NE,B,X,Y);
|
||||
|
||||
case 0x333: return Values3D<L,3,3,3>(NE,B,X,Y);
|
||||
case 0x334: return Values3D<L,3,3,4>(NE,B,X,Y);
|
||||
case 0x335: return Values3D<L,3,3,5>(NE,B,X,Y);
|
||||
case 0x336: return Values3D<L,3,3,6>(NE,B,X,Y);
|
||||
|
||||
case 0x343: return Values3D<L,3,4,3>(NE,B,X,Y);
|
||||
case 0x344: return Values3D<L,3,4,4>(NE,B,X,Y);
|
||||
case 0x346: return Values3D<L,3,4,6>(NE,B,X,Y);
|
||||
case 0x347: return Values3D<L,3,4,7>(NE,B,X,Y);
|
||||
case 0x348: return Values3D<L,3,4,8>(NE,B,X,Y);
|
||||
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
|
||||
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
|
||||
<< MQ << " 1D points are not supported!");
|
||||
Values3D<L>(NE,B,X,Y,vdim,D1D,Q1D);
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
|
||||
MFEM_ABORT("Kernel not supported yet");
|
||||
k::Specialization<3,QVectorLayout::byNODES,3,4,3>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,3,4,4>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,3,4,6>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,3,4,7>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,3,4,8>::Opt<1>::Add();
|
||||
}
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
|
||||
} // namespace internal
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -10,117 +10,45 @@
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "dispatch.hpp"
|
||||
#include "eval.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
// Tensor-product evaluation of quadrature point values: dispatch function.
|
||||
// Instantiation for the case QVectorLayout::byVDIM.
|
||||
template<>
|
||||
void TensorValues<QVectorLayout::byVDIM>(const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_val)
|
||||
void InitEvalByVDimKernels()
|
||||
{
|
||||
if (NE == 0) { return; }
|
||||
const int dim = maps.FE->GetDim();
|
||||
const int D1D = maps.ndof;
|
||||
const int Q1D = maps.nqpt;
|
||||
const real_t *B = maps.B.Read();
|
||||
const real_t *X = e_vec.Read();
|
||||
real_t *Y = q_val.Write();
|
||||
using k = QuadratureInterpolator::TensorEvalKernels;
|
||||
// 2D
|
||||
k::Specialization<2,QVectorLayout::byVDIM,1,2,4>::Opt<8>::Add();
|
||||
k::Specialization<2,QVectorLayout::byVDIM,1,3,6>::Opt<4>::Add();
|
||||
k::Specialization<2,QVectorLayout::byVDIM,1,4,8>::Opt<2>::Add();
|
||||
|
||||
constexpr QVectorLayout L = QVectorLayout::byVDIM;
|
||||
k::Specialization<2,QVectorLayout::byVDIM,2,2,4>::Opt<8>::Add();
|
||||
k::Specialization<2,QVectorLayout::byVDIM,2,3,4>::Opt<8>::Add();
|
||||
k::Specialization<2,QVectorLayout::byVDIM,2,3,6>::Opt<4>::Add();
|
||||
k::Specialization<2,QVectorLayout::byVDIM,2,4,8>::Opt<2>::Add();
|
||||
// 3D
|
||||
k::Specialization<3,QVectorLayout::byVDIM,1,2,4>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,1,3,6>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,1,4,8>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,3,2,4>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,3,3,6>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,3,4,8>::Opt<1>::Add();
|
||||
|
||||
const int id = (vdim<<8) | (D1D<<4) | Q1D;
|
||||
|
||||
if (dim == 1)
|
||||
{
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D,
|
||||
"Orders higher than " << DeviceDofQuadLimits::Get().MAX_D1D-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D,
|
||||
"Quadrature rules with more than "
|
||||
<< DeviceDofQuadLimits::Get().MAX_Q1D << " 1D points are not supported!");
|
||||
Values1D<L>(NE, B, X, Y, vdim, D1D, Q1D);
|
||||
return;
|
||||
}
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x124: return Values2D<L,1,2,4,8>(NE,B,X,Y);
|
||||
case 0x136: return Values2D<L,1,3,6,4>(NE,B,X,Y);
|
||||
case 0x148: return Values2D<L,1,4,8,2>(NE,B,X,Y);
|
||||
|
||||
case 0x224: return Values2D<L,2,2,4,8>(NE,B,X,Y);
|
||||
case 0x234: return Values2D<L,2,3,4,8>(NE,B,X,Y);
|
||||
case 0x236: return Values2D<L,2,3,6,4>(NE,B,X,Y);
|
||||
case 0x248: return Values2D<L,2,4,8,2>(NE,B,X,Y);
|
||||
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
|
||||
<< MQ << " 1D points are not supported!");
|
||||
Values2D<L>(NE,B,X,Y,vdim,D1D,Q1D);
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x124: return Values3D<L,1,2,4>(NE,B,X,Y);
|
||||
case 0x136: return Values3D<L,1,3,6>(NE,B,X,Y);
|
||||
case 0x148: return Values3D<L,1,4,8>(NE,B,X,Y);
|
||||
|
||||
case 0x324: return Values3D<L,3,2,4>(NE,B,X,Y);
|
||||
case 0x336: return Values3D<L,3,3,6>(NE,B,X,Y);
|
||||
case 0x348: return Values3D<L,3,4,8>(NE,B,X,Y);
|
||||
|
||||
// Used for LOR batched assembly
|
||||
case 0x322: return Values3D<L,3,2,2>(NE,B,X,Y);
|
||||
case 0x333: return Values3D<L,3,3,3>(NE,B,X,Y);
|
||||
case 0x344: return Values3D<L,3,4,4>(NE,B,X,Y);
|
||||
case 0x355: return Values3D<L,3,5,5>(NE,B,X,Y);
|
||||
case 0x366: return Values3D<L,3,6,6>(NE,B,X,Y);
|
||||
case 0x377: return Values3D<L,3,7,7>(NE,B,X,Y);
|
||||
case 0x388: return Values3D<L,3,8,8>(NE,B,X,Y);
|
||||
case 0x399: return Values3D<L,3,9,9>(NE,B,X,Y);
|
||||
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
|
||||
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
|
||||
<< MQ << " 1D points are not supported!");
|
||||
Values3D<L>(NE,B,X,Y,vdim,D1D,Q1D);
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
|
||||
MFEM_ABORT("Kernel not supported yet");
|
||||
k::Specialization<3,QVectorLayout::byVDIM,3,2,2>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,3,3,3>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,3,4,4>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,3,5,5>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,3,6,6>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,3,7,7>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,3,8,8>::Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,3,9,9>::Opt<1>::Add();
|
||||
}
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
|
||||
} // namespace internal
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -12,6 +12,9 @@
|
||||
// Internal header, included only by .cpp files.
|
||||
// Template function implementations.
|
||||
|
||||
#ifndef MFEM_QUADINTERP_GRAD
|
||||
#define MFEM_QUADINTERP_GRAD
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../../linalg/dtensor.hpp"
|
||||
@@ -29,6 +32,7 @@ namespace quadrature_interpolator
|
||||
|
||||
template<QVectorLayout Q_LAYOUT, bool GRAD_PHYS>
|
||||
static void Derivatives1D(const int NE,
|
||||
const real_t *b_,
|
||||
const real_t *g_,
|
||||
const real_t *j_,
|
||||
const real_t *x_,
|
||||
@@ -38,6 +42,7 @@ static void Derivatives1D(const int NE,
|
||||
const int d1d,
|
||||
const int q1d)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(b_);
|
||||
const auto g = Reshape(g_, q1d, d1d);
|
||||
const auto j = Reshape(j_, q1d, sdim, NE);
|
||||
const auto x = Reshape(x_, d1d, vdim, NE);
|
||||
@@ -232,6 +237,7 @@ static void Derivatives3D(const int NE,
|
||||
const real_t *j_,
|
||||
const real_t *x_,
|
||||
real_t *y_,
|
||||
const int sdim = 3,
|
||||
const int vdim = 0,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
@@ -370,4 +376,21 @@ static void Derivatives3D(const int NE,
|
||||
|
||||
} // namespace internal
|
||||
|
||||
/// @cond Suppress_Doxygen_warnings
|
||||
|
||||
template<int DIM, QVectorLayout Q_LAYOUT, bool GRAD_PHYS,
|
||||
int VDIM, int D1D, int Q1D, int NBZ>
|
||||
QuadratureInterpolator::GradKernelType
|
||||
QuadratureInterpolator::GradKernels::Kernel()
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::Derivatives1D<Q_LAYOUT, GRAD_PHYS>; }
|
||||
else if (DIM == 2) { return internal::quadrature_interpolator::Derivatives2D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D, NBZ>; }
|
||||
else if (DIM == 3) { return internal::quadrature_interpolator::Derivatives3D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
/// @endcond
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
|
||||
+45
-104
@@ -9,128 +9,69 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "dispatch.hpp"
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "grad.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
// Tensor-product evaluation of quadrature point derivatives: dispatch function.
|
||||
// Instantiation for the case QVectorLayout::byNODES.
|
||||
template<>
|
||||
void TensorDerivatives<QVectorLayout::byNODES>(const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_der)
|
||||
template <bool P>
|
||||
void InitGradByNodesKernels()
|
||||
{
|
||||
if (NE == 0) { return; }
|
||||
const int dim = maps.FE->GetDim();
|
||||
const int D1D = maps.ndof;
|
||||
const int Q1D = maps.nqpt;
|
||||
const real_t *B = maps.B.Read();
|
||||
const real_t *G = maps.G.Read();
|
||||
const real_t *J = nullptr; // not used in DERIVATIVES (non-GRAD_PHYS) mode
|
||||
const real_t *X = e_vec.Read();
|
||||
real_t *Y = q_der.Write();
|
||||
using k = QuadratureInterpolator::GradKernels;
|
||||
// 2D
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,1,3,3>::template Opt<16>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,1,3,4>::template Opt<16>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,1,4,3>::template Opt<16>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,1,4,4>::template Opt<16>::Add();
|
||||
|
||||
constexpr QVectorLayout L = QVectorLayout::byNODES;
|
||||
constexpr bool P = false; // GRAD_PHYS
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,2,2>::template Opt<16>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,2,3>::template Opt<8>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,2,4>::template Opt<4>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,2,5>::template Opt<4>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,2,6>::template Opt<2>::Add();
|
||||
|
||||
const int id = (vdim<<8) | (D1D<<4) | Q1D;
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,3,3>::template Opt<2>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,3,4>::template Opt<4>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,4,3>::template Opt<4>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,3,6>::template Opt<2>::Add();
|
||||
|
||||
if (dim == 1)
|
||||
{
|
||||
return Derivatives1D<L,P>(NE,G,J,X,Y,dim,vdim,D1D,Q1D);
|
||||
}
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x133: return Derivatives2D<L,P,1,3,3,16>(NE,B,G,J,X,Y);
|
||||
case 0x134: return Derivatives2D<L,P,1,3,4,16>(NE,B,G,J,X,Y);
|
||||
case 0x143: return Derivatives2D<L,P,1,4,3,16>(NE,B,G,J,X,Y);
|
||||
case 0x144: return Derivatives2D<L,P,1,4,4,16>(NE,B,G,J,X,Y);
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,4,4>::template Opt<2>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,4,5>::template Opt<2>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,4,6>::template Opt<2>::Add();
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,4,7>::template Opt<2>::Add();
|
||||
|
||||
case 0x222: return Derivatives2D<L,P,2,2,2,16>(NE,B,G,J,X,Y);
|
||||
case 0x223: return Derivatives2D<L,P,2,2,3,8>(NE,B,G,J,X,Y);
|
||||
case 0x224: return Derivatives2D<L,P,2,2,4,4>(NE,B,G,J,X,Y);
|
||||
case 0x225: return Derivatives2D<L,P,2,2,5,4>(NE,B,G,J,X,Y);
|
||||
case 0x226: return Derivatives2D<L,P,2,2,6,2>(NE,B,G,J,X,Y);
|
||||
k::Specialization<2,QVectorLayout::byNODES,P,2,5,6>::template Opt<2>::Add();
|
||||
// 3D
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,1,2,4>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,1,3,3>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,1,3,4>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,1,3,6>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,1,4,4>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,1,4,8>::template Opt<1>::Add();
|
||||
|
||||
case 0x233: return Derivatives2D<L,P,2,3,3,2>(NE,B,G,J,X,Y);
|
||||
case 0x234: return Derivatives2D<L,P,2,3,4,4>(NE,B,G,J,X,Y);
|
||||
case 0x243: return Derivatives2D<L,P,2,4,3,4>(NE,B,G,J,X,Y);
|
||||
case 0x236: return Derivatives2D<L,P,2,3,6,2>(NE,B,G,J,X,Y);
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,3,2,3>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,3,2,4>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,3,2,5>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,3,2,6>::template Opt<1>::Add();
|
||||
|
||||
case 0x244: return Derivatives2D<L,P,2,4,4,2>(NE,B,G,J,X,Y);
|
||||
case 0x245: return Derivatives2D<L,P,2,4,5,2>(NE,B,G,J,X,Y);
|
||||
case 0x246: return Derivatives2D<L,P,2,4,6,2>(NE,B,G,J,X,Y);
|
||||
case 0x247: return Derivatives2D<L,P,2,4,7,2>(NE,B,G,J,X,Y);
|
||||
|
||||
case 0x256: return Derivatives2D<L,P,2,5,6,2>(NE,B,G,J,X,Y);
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
if (D1D > MD || Q1D > MQ)
|
||||
{
|
||||
MFEM_ABORT("");
|
||||
}
|
||||
Derivatives2D<L,P>(NE,B,G,J,X,Y,dim,vdim,D1D,Q1D);
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x124: return Derivatives3D<L,P,1,2,4>(NE,B,G,J,X,Y);
|
||||
case 0x133: return Derivatives3D<L,P,1,3,3>(NE,B,G,J,X,Y);
|
||||
case 0x134: return Derivatives3D<L,P,1,3,4>(NE,B,G,J,X,Y);
|
||||
case 0x136: return Derivatives3D<L,P,1,3,6>(NE,B,G,J,X,Y);
|
||||
case 0x144: return Derivatives3D<L,P,1,4,4>(NE,B,G,J,X,Y);
|
||||
case 0x148: return Derivatives3D<L,P,1,4,8>(NE,B,G,J,X,Y);
|
||||
|
||||
case 0x323: return Derivatives3D<L,P,3,2,3>(NE,B,G,J,X,Y);
|
||||
case 0x324: return Derivatives3D<L,P,3,2,4>(NE,B,G,J,X,Y);
|
||||
case 0x325: return Derivatives3D<L,P,3,2,5>(NE,B,G,J,X,Y);
|
||||
case 0x326: return Derivatives3D<L,P,3,2,6>(NE,B,G,J,X,Y);
|
||||
|
||||
case 0x333: return Derivatives3D<L,P,3,3,3>(NE,B,G,J,X,Y);
|
||||
case 0x334: return Derivatives3D<L,P,3,3,4>(NE,B,G,J,X,Y);
|
||||
case 0x335: return Derivatives3D<L,P,3,3,5>(NE,B,G,J,X,Y);
|
||||
case 0x336: return Derivatives3D<L,P,3,3,6>(NE,B,G,J,X,Y);
|
||||
case 0x344: return Derivatives3D<L,P,3,4,4>(NE,B,G,J,X,Y);
|
||||
case 0x346: return Derivatives3D<L,P,3,4,6>(NE,B,G,J,X,Y);
|
||||
case 0x347: return Derivatives3D<L,P,3,4,7>(NE,B,G,J,X,Y);
|
||||
case 0x348: return Derivatives3D<L,P,3,4,8>(NE,B,G,J,X,Y);
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
|
||||
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
|
||||
<< MQ << " 1D points are not supported!");
|
||||
Derivatives3D<L,P>(NE,B,G,J,X,Y,vdim,D1D,Q1D);
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
|
||||
MFEM_ABORT("Kernel not supported yet");
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,3,3,3>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,3,3,4>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,3,3,5>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,3,3,6>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,3,4,4>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,3,4,6>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,3,4,7>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byNODES,P,3,4,8>::template Opt<1>::Add();
|
||||
}
|
||||
|
||||
template void InitGradByNodesKernels<true>();
|
||||
template void InitGradByNodesKernels<false>();
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
|
||||
} // namespace internal
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -9,100 +9,41 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "dispatch.hpp"
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "grad.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
// Tensor-product evaluation of quadrature point derivatives: dispatch function.
|
||||
// Instantiation for the case QVectorLayout::byVDIM.
|
||||
template<>
|
||||
void TensorDerivatives<QVectorLayout::byVDIM>(const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_der)
|
||||
template <bool P>
|
||||
void InitGradByVDimKernels()
|
||||
{
|
||||
if (NE == 0) { return; }
|
||||
const int dim = maps.FE->GetDim();
|
||||
const int D1D = maps.ndof;
|
||||
const int Q1D = maps.nqpt;
|
||||
const real_t *B = maps.B.Read();
|
||||
const real_t *G = maps.G.Read();
|
||||
const real_t *J = nullptr; // not used in DERIVATIVES (non-GRAD_PHYS) mode
|
||||
const real_t *X = e_vec.Read();
|
||||
real_t *Y = q_der.Write();
|
||||
using k = QuadratureInterpolator::GradKernels;
|
||||
// 2D
|
||||
k::Specialization<2,QVectorLayout::byVDIM,P,1,3,4>::template Opt<8>::Add();
|
||||
k::Specialization<2,QVectorLayout::byVDIM,P,1,4,6>::template Opt<4>::Add();
|
||||
k::Specialization<2,QVectorLayout::byVDIM,P,1,5,8>::template Opt<2>::Add();
|
||||
|
||||
constexpr QVectorLayout L = QVectorLayout::byVDIM;
|
||||
constexpr bool P = false; // GRAD_PHYS
|
||||
|
||||
const int id = (vdim<<8) | (D1D<<4) | Q1D;
|
||||
|
||||
if (dim == 1)
|
||||
{
|
||||
return Derivatives1D<L,P>(NE,G,J,X,Y,dim,vdim,D1D,Q1D);
|
||||
}
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x134: return Derivatives2D<L,P,1,3,4,8>(NE,B,G,J,X,Y);
|
||||
case 0x146: return Derivatives2D<L,P,1,4,6,4>(NE,B,G,J,X,Y);
|
||||
case 0x158: return Derivatives2D<L,P,1,5,8,2>(NE,B,G,J,X,Y);
|
||||
|
||||
case 0x234: return Derivatives2D<L,P,2,3,4,8>(NE,B,G,J,X,Y);
|
||||
case 0x246: return Derivatives2D<L,P,2,4,6,4>(NE,B,G,J,X,Y);
|
||||
case 0x258: return Derivatives2D<L,P,2,5,8,2>(NE,B,G,J,X,Y);
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
|
||||
<< MQ << " 1D points are not supported!");
|
||||
Derivatives2D<L,P>(NE,B,G,J,X,Y,dim,vdim,D1D,Q1D);
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x134: return Derivatives3D<L,P,1,3,4>(NE,B,G,J,X,Y);
|
||||
case 0x146: return Derivatives3D<L,P,1,4,6>(NE,B,G,J,X,Y);
|
||||
case 0x158: return Derivatives3D<L,P,1,5,8>(NE,B,G,J,X,Y);
|
||||
|
||||
case 0x334: return Derivatives3D<L,P,3,3,4>(NE,B,G,J,X,Y);
|
||||
case 0x346: return Derivatives3D<L,P,3,4,6>(NE,B,G,J,X,Y);
|
||||
case 0x358: return Derivatives3D<L,P,3,5,8>(NE,B,G,J,X,Y);
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
|
||||
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
|
||||
<< MQ << " 1D points are not supported!");
|
||||
Derivatives3D<L,P>(NE,B,G,J,X,Y,vdim,D1D,Q1D);
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
|
||||
MFEM_ABORT("Kernel not supported yet");
|
||||
k::Specialization<2,QVectorLayout::byVDIM,P,2,3,3>::template Opt<8>::Add();
|
||||
k::Specialization<2,QVectorLayout::byVDIM,P,2,3,4>::template Opt<8>::Add();
|
||||
k::Specialization<2,QVectorLayout::byVDIM,P,2,4,6>::template Opt<4>::Add();
|
||||
k::Specialization<2,QVectorLayout::byVDIM,P,2,5,8>::template Opt<2>::Add();
|
||||
// 3D
|
||||
k::Specialization<3,QVectorLayout::byVDIM,P,1,3,4>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,P,1,4,6>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,P,1,5,8>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,P,3,3,4>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,P,3,4,6>::template Opt<1>::Add();
|
||||
k::Specialization<3,QVectorLayout::byVDIM,P,3,5,8>::template Opt<1>::Add();
|
||||
}
|
||||
|
||||
template void InitGradByVDimKernels<true>();
|
||||
template void InitGradByVDimKernels<false>();
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
|
||||
} // namespace internal
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -1,123 +0,0 @@
|
||||
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "dispatch.hpp"
|
||||
#include "grad.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
// Tensor-product evaluation of quadrature point physical derivatives: dispatch
|
||||
// function.
|
||||
// Instantiation for the case QVectorLayout::byNODES.
|
||||
template<>
|
||||
void TensorPhysDerivatives<QVectorLayout::byNODES>(const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const GeometricFactors &geom,
|
||||
const Vector &e_vec,
|
||||
Vector &q_der)
|
||||
{
|
||||
if (NE == 0) { return; }
|
||||
const int dim = maps.FE->GetDim();
|
||||
const int D1D = maps.ndof;
|
||||
const int Q1D = maps.nqpt;
|
||||
|
||||
const int sdim = geom.mesh->SpaceDimension();
|
||||
|
||||
const real_t *B = maps.B.Read();
|
||||
const real_t *G = maps.G.Read();
|
||||
const real_t *J = geom.J.Read();
|
||||
const real_t *X = e_vec.Read();
|
||||
real_t *Y = q_der.Write();
|
||||
|
||||
constexpr QVectorLayout L = QVectorLayout::byNODES;
|
||||
constexpr bool P = true; // GRAD_PHYS
|
||||
|
||||
const int id = (vdim<<8) | (D1D<<4) | Q1D;
|
||||
|
||||
if (dim == 1)
|
||||
{
|
||||
return Derivatives1D<L,P>(NE,G,J,X,Y,sdim,vdim,D1D,Q1D);
|
||||
}
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x133: return Derivatives2D<L,P,1,3,3,8>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x134: return Derivatives2D<L,P,1,3,4,8>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x143: return Derivatives2D<L,P,1,4,3,4>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x144: return Derivatives2D<L,P,1,4,4,4>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x146: return Derivatives2D<L,P,1,4,6,4>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x158: return Derivatives2D<L,P,1,5,8,2>(NE,B,G,J,X,Y,sdim);
|
||||
|
||||
case 0x233: return Derivatives2D<L,P,2,3,3,8>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x234: return Derivatives2D<L,P,2,3,4,8>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x243: return Derivatives2D<L,P,2,4,3,4>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x244: return Derivatives2D<L,P,2,4,4,4>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x246: return Derivatives2D<L,P,2,4,6,4>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x258: return Derivatives2D<L,P,2,5,8,2>(NE,B,G,J,X,Y,sdim);
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
|
||||
<< MQ << " 1D points are not supported!");
|
||||
Derivatives2D<L,P>(NE,B,G,J,X,Y,sdim,vdim,D1D,Q1D);
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x133: return Derivatives3D<L,P,1,3,3>(NE,B,G,J,X,Y);
|
||||
case 0x134: return Derivatives3D<L,P,1,3,4>(NE,B,G,J,X,Y);
|
||||
case 0x144: return Derivatives3D<L,P,1,4,4>(NE,B,G,J,X,Y);
|
||||
case 0x146: return Derivatives3D<L,P,1,4,6>(NE,B,G,J,X,Y);
|
||||
case 0x158: return Derivatives3D<L,P,1,5,8>(NE,B,G,J,X,Y);
|
||||
|
||||
case 0x333: return Derivatives3D<L,P,3,3,3>(NE,B,G,J,X,Y);
|
||||
case 0x334: return Derivatives3D<L,P,3,3,4>(NE,B,G,J,X,Y);
|
||||
case 0x344: return Derivatives3D<L,P,3,4,4>(NE,B,G,J,X,Y);
|
||||
case 0x346: return Derivatives3D<L,P,3,4,6>(NE,B,G,J,X,Y);
|
||||
case 0x358: return Derivatives3D<L,P,3,5,8>(NE,B,G,J,X,Y);
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
|
||||
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
|
||||
<< MQ << " 1D points are not supported!");
|
||||
Derivatives3D<L,P>(NE,B,G,J,X,Y,vdim,D1D,Q1D);
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
|
||||
MFEM_ABORT("Unknown kernel");
|
||||
}
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
|
||||
} // namespace internal
|
||||
|
||||
} // namespace mfem
|
||||
@@ -1,114 +0,0 @@
|
||||
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "dispatch.hpp"
|
||||
#include "grad.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
// Tensor-product evaluation of quadrature point physical derivatives: dispatch
|
||||
// function.
|
||||
// Instantiation for the case QVectorLayout::byVDIM.
|
||||
template<>
|
||||
void TensorPhysDerivatives<QVectorLayout::byVDIM>(const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const GeometricFactors &geom,
|
||||
const Vector &e_vec,
|
||||
Vector &q_der)
|
||||
{
|
||||
if (NE == 0) { return; }
|
||||
const int dim = maps.FE->GetDim();
|
||||
const int D1D = maps.ndof;
|
||||
const int Q1D = maps.nqpt;
|
||||
|
||||
const int sdim = geom.mesh->SpaceDimension();
|
||||
|
||||
const real_t *B = maps.B.Read();
|
||||
const real_t *G = maps.G.Read();
|
||||
const real_t *J = geom.J.Read();
|
||||
const real_t *X = e_vec.Read();
|
||||
real_t *Y = q_der.Write();
|
||||
|
||||
constexpr QVectorLayout L = QVectorLayout::byVDIM;
|
||||
constexpr bool P = true; // GRAD_PHYS
|
||||
|
||||
const int id = (vdim<<8) | (D1D<<4) | Q1D;
|
||||
|
||||
if (dim == 1)
|
||||
{
|
||||
return Derivatives1D<L,P>(NE,G,J,X,Y,sdim,vdim,D1D,Q1D);
|
||||
}
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x134: return Derivatives2D<L,P,1,3,4,8>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x146: return Derivatives2D<L,P,1,4,6,4>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x158: return Derivatives2D<L,P,1,5,8,2>(NE,B,G,J,X,Y,sdim);
|
||||
|
||||
case 0x233: return Derivatives2D<L,P,2,3,3,8>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x234: return Derivatives2D<L,P,2,3,4,8>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x246: return Derivatives2D<L,P,2,4,6,4>(NE,B,G,J,X,Y,sdim);
|
||||
case 0x258: return Derivatives2D<L,P,2,5,8,2>(NE,B,G,J,X,Y,sdim);
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
|
||||
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
|
||||
<< MQ << " 1D points are not supported!");
|
||||
Derivatives2D<L,P>(NE,B,G,J,X,Y,sdim,vdim,D1D,Q1D);
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x134: return Derivatives3D<L,P,1,3,4>(NE,B,G,J,X,Y);
|
||||
case 0x146: return Derivatives3D<L,P,1,4,6>(NE,B,G,J,X,Y);
|
||||
case 0x158: return Derivatives3D<L,P,1,5,8>(NE,B,G,J,X,Y);
|
||||
|
||||
case 0x334: return Derivatives3D<L,P,3,3,4>(NE,B,G,J,X,Y);
|
||||
case 0x346: return Derivatives3D<L,P,3,4,6>(NE,B,G,J,X,Y);
|
||||
case 0x358: return Derivatives3D<L,P,3,5,8>(NE,B,G,J,X,Y);
|
||||
default:
|
||||
{
|
||||
const int MD = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
|
||||
const int MQ = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
|
||||
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
|
||||
<< " are not supported!");
|
||||
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
|
||||
<< MQ << " 1D points are not supported!");
|
||||
Derivatives3D<L,P>(NE,B,G,J,X,Y,vdim,D1D,Q1D);
|
||||
return;
|
||||
}
|
||||
}
|
||||
}
|
||||
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
|
||||
MFEM_ABORT("Unknown kernel");
|
||||
}
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
|
||||
} // namespace internal
|
||||
|
||||
} // namespace mfem
|
||||
+234
-187
@@ -10,7 +10,8 @@
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "quadinterpolator.hpp"
|
||||
#include "qinterp/dispatch.hpp"
|
||||
#include "qinterp/grad.hpp"
|
||||
#include "qinterp/eval.hpp"
|
||||
#include "qspace.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "../linalg/dtensor.hpp"
|
||||
@@ -19,6 +20,38 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace internal
|
||||
{
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
void InitEvalByNodesKernels();
|
||||
void InitEvalByVDimKernels();
|
||||
void InitEvalKernels();
|
||||
void InitDetKernels();
|
||||
template <bool P> void InitGradByNodesKernels();
|
||||
template <bool P> void InitGradByVDimKernels();
|
||||
}
|
||||
}
|
||||
|
||||
QuadratureInterpolator::Kernels QuadratureInterpolator::kernels;
|
||||
QuadratureInterpolator::Kernels::Kernels()
|
||||
{
|
||||
using namespace internal::quadrature_interpolator;
|
||||
|
||||
InitEvalByNodesKernels();
|
||||
InitEvalByVDimKernels();
|
||||
// Non-phys grad kernels
|
||||
InitGradByNodesKernels<false>();
|
||||
InitGradByVDimKernels<false>();
|
||||
// Phys grad kernels
|
||||
InitGradByNodesKernels<true>();
|
||||
InitGradByVDimKernels<true>();
|
||||
// Determinants
|
||||
InitDetKernels();
|
||||
// Non-tensor
|
||||
InitEvalKernels();
|
||||
}
|
||||
|
||||
QuadratureInterpolator::QuadratureInterpolator(const FiniteElementSpace &fes,
|
||||
const IntegrationRule &ir):
|
||||
|
||||
@@ -467,6 +500,7 @@ void QuadratureInterpolator::Mult(const Vector &e_vec,
|
||||
const int ne = fespace->GetNE();
|
||||
if (ne == 0) { return; }
|
||||
const int vdim = fespace->GetVDim();
|
||||
const int sdim = fespace->GetMesh()->SpaceDimension();
|
||||
const FiniteElement *fe = fespace->GetFE(0);
|
||||
const bool use_tensor_eval =
|
||||
use_tensor_products &&
|
||||
@@ -477,6 +511,8 @@ void QuadratureInterpolator::Mult(const Vector &e_vec,
|
||||
use_tensor_eval ? DofToQuad::TENSOR : DofToQuad::FULL;
|
||||
const DofToQuad &maps = fe->GetDofToQuad(*ir, mode);
|
||||
const int dim = maps.FE->GetDim();
|
||||
const int nd = maps.ndof;
|
||||
const int nq = maps.nqpt;
|
||||
const GeometricFactors *geom = nullptr;
|
||||
if (eval_flags & PHYSICAL_DERIVATIVES)
|
||||
{
|
||||
@@ -492,202 +528,31 @@ void QuadratureInterpolator::Mult(const Vector &e_vec,
|
||||
|
||||
if (use_tensor_eval)
|
||||
{
|
||||
// TODO: use fused kernels
|
||||
if (q_layout == QVectorLayout::byNODES)
|
||||
if (eval_flags & VALUES)
|
||||
{
|
||||
if (eval_flags & VALUES)
|
||||
{
|
||||
TensorValues<QVectorLayout::byNODES>(ne, vdim, maps, e_vec, q_val);
|
||||
}
|
||||
if (eval_flags & DERIVATIVES)
|
||||
{
|
||||
TensorDerivatives<QVectorLayout::byNODES>(
|
||||
ne, vdim, maps, e_vec, q_der);
|
||||
}
|
||||
if (eval_flags & PHYSICAL_DERIVATIVES)
|
||||
{
|
||||
TensorPhysDerivatives<QVectorLayout::byNODES>(
|
||||
ne, vdim, maps, *geom, e_vec, q_der);
|
||||
}
|
||||
TensorEvalKernels::Run(dim, q_layout, vdim, nd, nq, ne, maps.B.Read(),
|
||||
e_vec.Read(), q_val.Write(), vdim, nd, nq);
|
||||
}
|
||||
|
||||
if (q_layout == QVectorLayout::byVDIM)
|
||||
if (eval_flags & (DERIVATIVES | PHYSICAL_DERIVATIVES))
|
||||
{
|
||||
if (eval_flags & VALUES)
|
||||
{
|
||||
TensorValues<QVectorLayout::byVDIM>(ne, vdim, maps, e_vec, q_val);
|
||||
}
|
||||
if (eval_flags & DERIVATIVES)
|
||||
{
|
||||
TensorDerivatives<QVectorLayout::byVDIM>(
|
||||
ne, vdim, maps, e_vec, q_der);
|
||||
}
|
||||
if (eval_flags & PHYSICAL_DERIVATIVES)
|
||||
{
|
||||
TensorPhysDerivatives<QVectorLayout::byVDIM>(
|
||||
ne, vdim, maps, *geom, e_vec, q_der);
|
||||
}
|
||||
const bool phys = (eval_flags & PHYSICAL_DERIVATIVES);
|
||||
const real_t *J = phys ? geom->J.Read() : nullptr;
|
||||
const int s_dim = phys ? sdim : dim;
|
||||
GradKernels::Run(dim, q_layout, phys, vdim, nd, nq, ne,
|
||||
maps.B.Read(), maps.G.Read(), J, e_vec.Read(),
|
||||
q_der.Write(), s_dim, vdim, nd, nq);
|
||||
}
|
||||
if (eval_flags & DETERMINANTS)
|
||||
{
|
||||
TensorDeterminants(ne, vdim, maps, e_vec, q_det, d_buffer);
|
||||
DetKernels::Run(dim, vdim, nd, nq, ne, maps.B.Read(),
|
||||
maps.G.Read(), e_vec.Read(), q_det.Write(), nd,
|
||||
nq, &d_buffer);
|
||||
}
|
||||
}
|
||||
else // use_tensor_eval == false
|
||||
{
|
||||
const int nd = maps.ndof;
|
||||
const int nq = maps.nqpt;
|
||||
|
||||
void (*mult)(const int NE,
|
||||
const int vdim,
|
||||
const QVectorLayout q_layout,
|
||||
const GeometricFactors *geom,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_val,
|
||||
Vector &q_der,
|
||||
Vector &q_det,
|
||||
const int eval_flags) = NULL;
|
||||
|
||||
if (dim == 1)
|
||||
{
|
||||
mult = &Eval1D;
|
||||
}
|
||||
else if (vdim == 1) // dim == 2 || dim == 3
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (100*nd + nq)
|
||||
{
|
||||
// Q0
|
||||
case 101: mult = &Eval2D<1,1,1>; break;
|
||||
case 104: mult = &Eval2D<1,1,4>; break;
|
||||
// Q1
|
||||
case 404: mult = &Eval2D<1,4,4>; break;
|
||||
case 409: mult = &Eval2D<1,4,9>; break;
|
||||
// Q2
|
||||
case 909: mult = &Eval2D<1,9,9>; break;
|
||||
case 916: mult = &Eval2D<1,9,16>; break;
|
||||
// Q3
|
||||
case 1616: mult = &Eval2D<1,16,16>; break;
|
||||
case 1625: mult = &Eval2D<1,16,25>; break;
|
||||
case 1636: mult = &Eval2D<1,16,36>; break;
|
||||
// Q4
|
||||
case 2525: mult = &Eval2D<1,25,25>; break;
|
||||
case 2536: mult = &Eval2D<1,25,36>; break;
|
||||
case 2549: mult = &Eval2D<1,25,49>; break;
|
||||
case 2564: mult = &Eval2D<1,25,64>; break;
|
||||
}
|
||||
if (nq >= 100 || !mult)
|
||||
{
|
||||
mult = &Eval2D<1,0,0>;
|
||||
}
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch (1000*nd + nq)
|
||||
{
|
||||
// Q0
|
||||
case 1001: mult = &Eval3D<1,1,1>; break;
|
||||
case 1008: mult = &Eval3D<1,1,8>; break;
|
||||
// Q1
|
||||
case 8008: mult = &Eval3D<1,8,8>; break;
|
||||
case 8027: mult = &Eval3D<1,8,27>; break;
|
||||
// Q2
|
||||
case 27027: mult = &Eval3D<1,27,27>; break;
|
||||
case 27064: mult = &Eval3D<1,27,64>; break;
|
||||
// Q3
|
||||
case 64064: mult = &Eval3D<1,64,64>; break;
|
||||
case 64125: mult = &Eval3D<1,64,125>; break;
|
||||
case 64216: mult = &Eval3D<1,64,216>; break;
|
||||
// Q4
|
||||
case 125125: mult = &Eval3D<1,125,125>; break;
|
||||
case 125216: mult = &Eval3D<1,125,216>; break;
|
||||
}
|
||||
if (nq >= 1000 || !mult)
|
||||
{
|
||||
mult = &Eval3D<1,0,0>;
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (vdim == 3 && dim == 2)
|
||||
{
|
||||
switch (100*nd + nq)
|
||||
{
|
||||
// Q0
|
||||
case 101: mult = &Eval2D<3,1,1>; break;
|
||||
case 104: mult = &Eval2D<3,1,4>; break;
|
||||
// Q1
|
||||
case 404: mult = &Eval2D<3,4,4>; break;
|
||||
case 409: mult = &Eval2D<3,4,9>; break;
|
||||
// Q2
|
||||
case 904: mult = &Eval2D<3,9,4>; break;
|
||||
case 909: mult = &Eval2D<3,9,9>; break;
|
||||
case 916: mult = &Eval2D<3,9,16>; break;
|
||||
case 925: mult = &Eval2D<3,9,25>; break;
|
||||
// Q3
|
||||
case 1616: mult = &Eval2D<3,16,16>; break;
|
||||
case 1625: mult = &Eval2D<3,16,25>; break;
|
||||
case 1636: mult = &Eval2D<3,16,36>; break;
|
||||
// Q4
|
||||
case 2525: mult = &Eval2D<3,25,25>; break;
|
||||
case 2536: mult = &Eval2D<3,25,36>; break;
|
||||
case 2549: mult = &Eval2D<3,25,49>; break;
|
||||
case 2564: mult = &Eval2D<3,25,64>; break;
|
||||
default: mult = &Eval2D<3,0,0>;
|
||||
}
|
||||
}
|
||||
else if (vdim == dim)
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (100*nd + nq)
|
||||
{
|
||||
// Q1
|
||||
case 404: mult = &Eval2D<2,4,4>; break;
|
||||
case 409: mult = &Eval2D<2,4,9>; break;
|
||||
// Q2
|
||||
case 909: mult = &Eval2D<2,9,9>; break;
|
||||
case 916: mult = &Eval2D<2,9,16>; break;
|
||||
// Q3
|
||||
case 1616: mult = &Eval2D<2,16,16>; break;
|
||||
case 1625: mult = &Eval2D<2,16,25>; break;
|
||||
case 1636: mult = &Eval2D<2,16,36>; break;
|
||||
// Q4
|
||||
case 2525: mult = &Eval2D<2,25,25>; break;
|
||||
case 2536: mult = &Eval2D<2,25,36>; break;
|
||||
case 2549: mult = &Eval2D<2,25,49>; break;
|
||||
case 2564: mult = &Eval2D<2,25,64>; break;
|
||||
}
|
||||
if (nq >= 100 || !mult) { mult = &Eval2D<2,0,0>; }
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch (1000*nd + nq)
|
||||
{
|
||||
// Q1
|
||||
case 8008: mult = &Eval3D<3,8,8>; break;
|
||||
case 8027: mult = &Eval3D<3,8,27>; break;
|
||||
// Q2
|
||||
case 27027: mult = &Eval3D<3,27,27>; break;
|
||||
case 27064: mult = &Eval3D<3,27,64>; break;
|
||||
case 27125: mult = &Eval3D<3,27,125>; break;
|
||||
// Q3
|
||||
case 64064: mult = &Eval3D<3,64,64>; break;
|
||||
case 64125: mult = &Eval3D<3,64,125>; break;
|
||||
case 64216: mult = &Eval3D<3,64,216>; break;
|
||||
// Q4
|
||||
case 125125: mult = &Eval3D<3,125,125>; break;
|
||||
case 125216: mult = &Eval3D<3,125,216>; break;
|
||||
}
|
||||
if (nq >= 1000 || !mult) { mult = &Eval3D<3,0,0>; }
|
||||
}
|
||||
}
|
||||
if (mult)
|
||||
{
|
||||
mult(ne,vdim,q_layout,geom,maps,e_vec,q_val,q_der,q_det,eval_flags);
|
||||
}
|
||||
else { MFEM_ABORT("case not supported yet"); }
|
||||
EvalKernels::Run(dim, vdim, maps.ndof, maps.nqpt, ne,vdim,q_layout,
|
||||
geom, maps,e_vec, q_val,q_der,q_det,eval_flags);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -731,4 +596,186 @@ void QuadratureInterpolator::Determinants(const Vector &e_vec,
|
||||
Mult(e_vec, DETERMINANTS, empty, empty, q_det);
|
||||
}
|
||||
|
||||
/// @cond Suppress_Doxygen_warnings
|
||||
|
||||
namespace
|
||||
{
|
||||
using EvalKernel = QuadratureInterpolator::EvalKernelType;
|
||||
using TensorEvalKernel = QuadratureInterpolator::TensorEvalKernelType;
|
||||
using GradKernel = QuadratureInterpolator::GradKernelType;
|
||||
|
||||
template <QVectorLayout Q_LAYOUT>
|
||||
TensorEvalKernel FallbackTensorEvalKernel(int DIM)
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::Values1D<Q_LAYOUT>; }
|
||||
else if (DIM == 2) { return internal::quadrature_interpolator::Values2D<Q_LAYOUT>; }
|
||||
else if (DIM == 3) { return internal::quadrature_interpolator::Values3D<Q_LAYOUT>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
template<QVectorLayout Q_LAYOUT, bool GRAD_PHYS>
|
||||
GradKernel GetGradKernel(int DIM)
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::Derivatives1D<Q_LAYOUT, GRAD_PHYS>; }
|
||||
else if (DIM == 2) { return internal::quadrature_interpolator::Derivatives2D<Q_LAYOUT, GRAD_PHYS>; }
|
||||
else if (DIM == 3) { return internal::quadrature_interpolator::Derivatives3D<Q_LAYOUT, GRAD_PHYS>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
template<QVectorLayout Q_LAYOUT>
|
||||
GradKernel GetGradKernel(int DIM, bool GRAD_PHYS)
|
||||
{
|
||||
if (GRAD_PHYS) { return GetGradKernel<Q_LAYOUT, true>(DIM); }
|
||||
else { return GetGradKernel<Q_LAYOUT, false>(DIM); }
|
||||
}
|
||||
} // namespace
|
||||
|
||||
template <int DIM, int VDIM, int ND, int NQ>
|
||||
EvalKernel QuadratureInterpolator::EvalKernels::Kernel()
|
||||
{
|
||||
using namespace internal::quadrature_interpolator;
|
||||
if (DIM == 1) { return Eval1D; }
|
||||
else if (DIM == 2) { return Eval2D<VDIM,ND,NQ>; }
|
||||
else if (DIM == 3) { return Eval3D<VDIM,ND,NQ>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
template <int DIM>
|
||||
EvalKernel GetEvalKernelVDimFallback(int VDIM)
|
||||
{
|
||||
using EvalKernels = QuadratureInterpolator::EvalKernels;
|
||||
if (VDIM == 1) { return EvalKernels::Kernel<DIM,1,0,0>(); }
|
||||
else if (VDIM == 2) { return EvalKernels::Kernel<DIM,2,0,0>(); }
|
||||
else if (VDIM == 3) { return EvalKernels::Kernel<DIM,3,0,0>(); }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
EvalKernel QuadratureInterpolator::EvalKernels::Fallback(
|
||||
int DIM, int VDIM, int ND, int NQ)
|
||||
{
|
||||
if (DIM == 1) { return GetEvalKernelVDimFallback<1>(VDIM); }
|
||||
else if (DIM == 2) { return GetEvalKernelVDimFallback<2>(VDIM); }
|
||||
else if (DIM == 3) { return GetEvalKernelVDimFallback<3>(VDIM); }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
TensorEvalKernel QuadratureInterpolator::TensorEvalKernels::Fallback(
|
||||
int DIM, QVectorLayout Q_LAYOUT, int, int, int)
|
||||
{
|
||||
if (Q_LAYOUT == QVectorLayout::byNODES) { return FallbackTensorEvalKernel<QVectorLayout::byNODES>(DIM); }
|
||||
else { return FallbackTensorEvalKernel<QVectorLayout::byVDIM>(DIM); }
|
||||
}
|
||||
|
||||
GradKernel QuadratureInterpolator::GradKernels::Fallback(
|
||||
int DIM, QVectorLayout Q_LAYOUT, bool GRAD_PHYS, int, int, int)
|
||||
{
|
||||
if (Q_LAYOUT == QVectorLayout::byNODES) { return GetGradKernel<QVectorLayout::byNODES>(DIM, GRAD_PHYS); }
|
||||
else { return GetGradKernel<QVectorLayout::byVDIM>(DIM, GRAD_PHYS); }
|
||||
}
|
||||
|
||||
/// @endcond
|
||||
|
||||
namespace internal
|
||||
{
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
void InitEvalKernels()
|
||||
{
|
||||
using k = QuadratureInterpolator::EvalKernels;
|
||||
// 2D, VDIM = 1
|
||||
k::Specialization<2,1,1,1>::Add();
|
||||
k::Specialization<2,1,1,4>::Add();
|
||||
// Q1
|
||||
k::Specialization<2,1,4,4>::Add();
|
||||
k::Specialization<2,1,4,9>::Add();
|
||||
// Q2
|
||||
k::Specialization<2,1,9,9>::Add();
|
||||
k::Specialization<2,1,9,16>::Add();
|
||||
// Q3
|
||||
k::Specialization<2,1,16,16>::Add();
|
||||
k::Specialization<2,1,16,25>::Add();
|
||||
k::Specialization<2,1,16,36>::Add();
|
||||
// Q4
|
||||
k::Specialization<2,1,25,25>::Add();
|
||||
k::Specialization<2,1,25,36>::Add();
|
||||
k::Specialization<2,1,25,49>::Add();
|
||||
k::Specialization<2,1,25,64>::Add();
|
||||
|
||||
// 3D, VDIM = 1
|
||||
// Q0
|
||||
k::Specialization<3,1,1,1>::Add();
|
||||
k::Specialization<3,1,1,8>::Add();
|
||||
// Q1
|
||||
k::Specialization<3,1,8,8>::Add();
|
||||
k::Specialization<3,1,8,27>::Add();
|
||||
// Q2
|
||||
k::Specialization<3,1,27,27>::Add();
|
||||
k::Specialization<3,1,27,64>::Add();
|
||||
// Q3
|
||||
k::Specialization<3,1,64,64>::Add();
|
||||
k::Specialization<3,1,64,125>::Add();
|
||||
k::Specialization<3,1,64,216>::Add();
|
||||
// Q4
|
||||
k::Specialization<3,1,125,125>::Add();
|
||||
k::Specialization<3,1,125,216>::Add();
|
||||
|
||||
// 2D, VDIM = 3
|
||||
// Q0
|
||||
k::Specialization<2,3,1,1>::Add();
|
||||
k::Specialization<2,3,1,4>::Add();
|
||||
// Q1
|
||||
k::Specialization<2,3,4,4>::Add();
|
||||
k::Specialization<2,3,4,9>::Add();
|
||||
// Q2
|
||||
k::Specialization<2,3,9,4>::Add();
|
||||
k::Specialization<2,3,9,9>::Add();
|
||||
k::Specialization<2,3,9,16>::Add();
|
||||
k::Specialization<2,3,9,25>::Add();
|
||||
// Q3
|
||||
k::Specialization<2,3,16,16>::Add();
|
||||
k::Specialization<2,3,16,25>::Add();
|
||||
k::Specialization<2,3,16,36>::Add();
|
||||
// Q4
|
||||
k::Specialization<2,3,25,25>::Add();
|
||||
k::Specialization<2,3,25,36>::Add();
|
||||
k::Specialization<2,3,25,49>::Add();
|
||||
k::Specialization<2,3,25,64>::Add();
|
||||
|
||||
// 2D, VDIM = 2
|
||||
// Q1
|
||||
k::Specialization<2,2,4,4>::Add();
|
||||
k::Specialization<2,2,4,9>::Add();
|
||||
// Q2
|
||||
k::Specialization<2,2,9,9>::Add();
|
||||
k::Specialization<2,2,9,16>::Add();
|
||||
// Q3
|
||||
k::Specialization<2,2,16,16>::Add();
|
||||
k::Specialization<2,2,16,25>::Add();
|
||||
k::Specialization<2,2,16,36>::Add();
|
||||
// Q4
|
||||
k::Specialization<2,2,25,25>::Add();
|
||||
k::Specialization<2,2,25,36>::Add();
|
||||
k::Specialization<2,2,25,49>::Add();
|
||||
k::Specialization<2,2,25,64>::Add();
|
||||
|
||||
// 3D, VDIM = 3
|
||||
// Q1
|
||||
k::Specialization<3,3,8,8>::Add();
|
||||
k::Specialization<3,3,8,27>::Add();
|
||||
// Q2
|
||||
k::Specialization<3,3,27,27>::Add();
|
||||
k::Specialization<3,3,27,64>::Add();
|
||||
k::Specialization<3,3,27,125>::Add();
|
||||
// Q3
|
||||
k::Specialization<3,3,64,64>::Add();
|
||||
k::Specialization<3,3,64,125>::Add();
|
||||
k::Specialization<3,3,64,216>::Add();
|
||||
// Q4
|
||||
k::Specialization<3,3,125,125>::Add();
|
||||
k::Specialization<3,3,125,216>::Add();
|
||||
}
|
||||
|
||||
} // namespace quadrature_Interpolator
|
||||
} // namespace internal
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -13,6 +13,7 @@
|
||||
#define MFEM_QUADINTERP
|
||||
|
||||
#include "fespace.hpp"
|
||||
#include "kernel_dispatch.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -130,6 +131,29 @@ public:
|
||||
/// Perform the transpose operation of Mult(). (TODO)
|
||||
void MultTranspose(unsigned eval_flags, const Vector &q_val,
|
||||
const Vector &q_der, Vector &e_vec) const;
|
||||
|
||||
|
||||
using TensorEvalKernelType = void(*)(const int, const real_t *, const real_t *,
|
||||
real_t *, const int, const int, const int);
|
||||
using GradKernelType = void(*)(const int, const real_t *, const real_t *,
|
||||
const real_t *, const real_t *, real_t *,
|
||||
const int, const int, const int, const int);
|
||||
using DetKernelType = void(*)(const int NE, const real_t *, const real_t *,
|
||||
const real_t *, real_t *, const int, const int,
|
||||
Vector *);
|
||||
using EvalKernelType = void(*)(const int, const int, const QVectorLayout,
|
||||
const GeometricFactors *, const DofToQuad &,
|
||||
const Vector &, Vector &, Vector &, Vector &,
|
||||
const int);
|
||||
|
||||
MFEM_REGISTER_KERNELS(TensorEvalKernels, TensorEvalKernelType,
|
||||
(int, QVectorLayout, int, int, int), (int));
|
||||
MFEM_REGISTER_KERNELS(GradKernels, GradKernelType,
|
||||
(int, QVectorLayout, bool, int, int, int), (int));
|
||||
MFEM_REGISTER_KERNELS(DetKernels, DetKernelType, (int, int, int, int));
|
||||
MFEM_REGISTER_KERNELS(EvalKernels, EvalKernelType, (int, int, int, int));
|
||||
|
||||
static struct Kernels { Kernels(); } kernels;
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
+4
-2
@@ -855,7 +855,8 @@ void ConformingFaceRestriction::SetFaceDofsScatterIndices(
|
||||
"This method should not be used on nonconforming coarse faces.");
|
||||
MFEM_ASSERT(face.element[0].orientation==0,
|
||||
"FaceRestriction used on degenerated mesh.");
|
||||
MFEM_CONTRACT_VAR(f_ordering); // not supported yet
|
||||
MFEM_VERIFY(f_ordering == ElementDofOrdering::LEXICOGRAPHIC,
|
||||
"NATIVE ordering is not supported yet");
|
||||
|
||||
fes.GetFE(0)->GetFaceMap(face.element[0].local_face_id, face_map);
|
||||
|
||||
@@ -883,7 +884,8 @@ void ConformingFaceRestriction::SetFaceDofsGatherIndices(
|
||||
{
|
||||
MFEM_ASSERT(!(face.IsNonconformingCoarse()),
|
||||
"This method should not be used on nonconforming coarse faces.");
|
||||
MFEM_CONTRACT_VAR(f_ordering); // not supported yet
|
||||
MFEM_VERIFY(f_ordering == ElementDofOrdering::LEXICOGRAPHIC,
|
||||
"NATIVE ordering is not supported yet");
|
||||
|
||||
fes.GetFE(0)->GetFaceMap(face.element[0].local_face_id, face_map);
|
||||
|
||||
|
||||
@@ -1233,6 +1233,8 @@ void PRefinementTransferOperator::Mult(const Vector& x, Vector& y) const
|
||||
|
||||
int vdim = lFESpace.GetVDim();
|
||||
|
||||
y = 0.0;
|
||||
|
||||
for (int i = 0; i < mesh->GetNE(); i++)
|
||||
{
|
||||
DofTransformation * doftrans_h = hFESpace.GetElementDofs(i, h_dofs);
|
||||
|
||||
@@ -63,9 +63,9 @@
|
||||
#define MFEM_FOREACH_THREAD(i,k,N) for(int i=0; i<N; i++)
|
||||
#endif
|
||||
|
||||
// 'double' atomicAdd implementation for previous versions of CUDA
|
||||
// 'double' and 'float' atomicAdd implementation for previous versions of CUDA
|
||||
#if defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__) && __CUDA_ARCH__ < 600
|
||||
MFEM_DEVICE inline real_t atomicAdd(real_t *add, real_t val)
|
||||
MFEM_DEVICE inline mfem::real_t atomicAdd(mfem::real_t *add, mfem::real_t val)
|
||||
{
|
||||
unsigned long long int *ptr = (unsigned long long int *) add;
|
||||
unsigned long long int old = *ptr, reg;
|
||||
|
||||
@@ -37,6 +37,78 @@ Table::Table(const Table &table)
|
||||
}
|
||||
}
|
||||
|
||||
Table::Table(const Table &table1,
|
||||
const Table &table2, int offset)
|
||||
{
|
||||
MFEM_ASSERT(table1.size == table2.size,
|
||||
"Tables have different sizes can not merge.");
|
||||
size = table1.size;
|
||||
|
||||
const int nnz = table1.I[size] + table2.I[size];
|
||||
I.New(size+1, table1.I.GetMemoryType());
|
||||
J.New(nnz, table1.J.GetMemoryType());
|
||||
|
||||
I[0] = 0;
|
||||
Array<int> row;
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
I[i+1] = I[i];
|
||||
|
||||
table1.GetRow(i, row);
|
||||
for (int r = 0; r < row.Size(); r++, I[i+1] ++)
|
||||
{
|
||||
J[ I[i+1] ] = row[r];
|
||||
}
|
||||
|
||||
table2.GetRow(i, row);
|
||||
for (int r = 0; r < row.Size(); r++, I[i+1] ++)
|
||||
{
|
||||
J[ I[i+1] ] = (row[r] < 0) ? row[r] - offset : row[r] + offset;
|
||||
}
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
Table::Table(const Table &table1,
|
||||
const Table &table2, int offset2,
|
||||
const Table &table3, int offset3)
|
||||
{
|
||||
MFEM_ASSERT(table1.size == table2.size,
|
||||
"Tables have different sizes can not merge.");
|
||||
MFEM_ASSERT(table1.size == table3.size,
|
||||
"Tables have different sizes can not merge.");
|
||||
size = table1.size;
|
||||
|
||||
const int nnz = table1.I[size] + table2.I[size] + table3.I[size];
|
||||
I.New(size+1, table1.I.GetMemoryType());
|
||||
J.New(nnz, table1.J.GetMemoryType());
|
||||
|
||||
I[0] = 0;
|
||||
Array<int> row;
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
I[i+1] = I[i];
|
||||
|
||||
table1.GetRow(i, row);
|
||||
for (int r = 0; r < row.Size(); r++, I[i+1] ++)
|
||||
{
|
||||
J[ I[i+1] ] = row[r];
|
||||
}
|
||||
|
||||
table2.GetRow(i, row);
|
||||
for (int r = 0; r < row.Size(); r++, I[i+1] ++)
|
||||
{
|
||||
J[ I[i+1] ] = (row[r] < 0) ? row[r] - offset2 : row[r] + offset2;
|
||||
}
|
||||
|
||||
table3.GetRow(i, row);
|
||||
for (int r = 0; r < row.Size(); r++, I[i+1] ++)
|
||||
{
|
||||
J[ I[i+1] ] = (row[r] < 0) ? row[r] - offset3 : row[r] + offset3;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
Table& Table::operator=(const Table &rhs)
|
||||
{
|
||||
Clear();
|
||||
|
||||
@@ -58,6 +58,14 @@ public:
|
||||
/// Copy constructor
|
||||
Table(const Table &);
|
||||
|
||||
/** Merge constructors
|
||||
This is used to combine two or three tables into one table.*/
|
||||
Table(const Table &table1,
|
||||
const Table &table2, int offset2);
|
||||
Table(const Table &table1,
|
||||
const Table &table2, int offset2,
|
||||
const Table &table3, int offset3);
|
||||
|
||||
/// Assignment operator: deep copy
|
||||
Table& operator=(const Table &rhs);
|
||||
|
||||
|
||||
@@ -44,6 +44,7 @@ list(APPEND HDRS
|
||||
handle.hpp
|
||||
invariants.hpp
|
||||
kernels.hpp
|
||||
lapack.hpp
|
||||
linalg.hpp
|
||||
matrix.hpp
|
||||
ode.hpp
|
||||
|
||||
+20
-138
@@ -10,60 +10,9 @@
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "complex_densemat.hpp"
|
||||
#include "lapack.hpp"
|
||||
#include <complex>
|
||||
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
extern "C" void
|
||||
cgetrf_(int *, int *, std::complex<float> *, int *, int *, int *);
|
||||
extern "C" void
|
||||
cgetrs_(char *, int *, int *, std::complex<float> *, int *, int *,
|
||||
std::complex<float> *, int *, int *);
|
||||
extern "C" void
|
||||
cgetri_(int *, std::complex<float> *, int *, int *,
|
||||
std::complex<float> *, int *, int *);
|
||||
extern "C" void
|
||||
ctrsm_(char *, char *, char *, char *, int *, int *, std::complex<float> *,
|
||||
std::complex<float> *, int *, std::complex<float> *, int *);
|
||||
extern "C" void
|
||||
cpotrf_(char *, int *, std::complex<float> *, int *, int *);
|
||||
|
||||
extern "C" void
|
||||
ctrtrs_(char *, char*, char *, int *, int *, std::complex<float> *, int *,
|
||||
std::complex<float> *, int *, int *);
|
||||
extern "C" void
|
||||
cpotri_(char *, int *, std::complex<float> *, int*, int *);
|
||||
|
||||
extern "C" void
|
||||
cpotrs_(char *, int *, int *, std::complex<float> *, int *,
|
||||
std::complex<float> *, int *, int *);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
extern "C" void
|
||||
zgetrf_(int *, int *, std::complex<double> *, int *, int *, int *);
|
||||
extern "C" void
|
||||
zgetrs_(char *, int *, int *, std::complex<double> *, int *, int *,
|
||||
std::complex<double> *, int *, int *);
|
||||
extern "C" void
|
||||
zgetri_(int *, std::complex<double> *, int *, int *,
|
||||
std::complex<double> *, int *, int *);
|
||||
extern "C" void
|
||||
ztrsm_(char *, char *, char *, char *, int *, int *, std::complex<double> *,
|
||||
std::complex<double> *, int *, std::complex<double> *, int *);
|
||||
extern "C" void
|
||||
zpotrf_(char *, int *, std::complex<double> *, int *, int *);
|
||||
|
||||
extern "C" void
|
||||
ztrtrs_(char *, char*, char *, int *, int *, std::complex<double> *, int *,
|
||||
std::complex<double> *, int *, int *);
|
||||
extern "C" void
|
||||
zpotri_(char *, int *, std::complex<double> *, int*, int *);
|
||||
|
||||
extern "C" void
|
||||
zpotrs_(char *, int *, int *, std::complex<double> *, int *,
|
||||
std::complex<double> *, int *, int *);
|
||||
#endif
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
@@ -175,35 +124,17 @@ ComplexDenseMatrix * ComplexDenseMatrix::ComputeInverse()
|
||||
std::complex<real_t> qwork, *work;
|
||||
int info;
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
cgetrf_(&w, &w, data, &w, ipiv, &info);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
zgetrf_(&w, &w, data, &w, ipiv, &info);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_COMPLEX(getrf_)(&w, &w, data, &w, ipiv, &info);
|
||||
if (info)
|
||||
{
|
||||
mfem_error("DenseMatrix::Invert() : Error in ZGETRF");
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
cgetri_(&w, data, &w, ipiv, &qwork, &lwork, &info);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
zgetri_(&w, data, &w, ipiv, &qwork, &lwork, &info);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_COMPLEX(getri_)(&w, data, &w, ipiv, &qwork, &lwork, &info);
|
||||
lwork = (int) qwork.real();
|
||||
work = new std::complex<real_t>[lwork];
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
cgetri_(&w, data, &w, ipiv, work, &lwork, &info);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
zgetri_(&w, data, &w, ipiv, work, &lwork, &info);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_COMPLEX(getri_)(&w, data, &w, ipiv, work, &lwork, &info);
|
||||
if (info)
|
||||
{
|
||||
mfem_error("DenseMatrix::Invert() : Error in ZGETRI");
|
||||
@@ -493,11 +424,7 @@ bool ComplexLUFactors::Factor(int m, real_t TOL)
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
int info = 0;
|
||||
MFEM_VERIFY(data, "Matrix data not set");
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
if (m) { cgetrf_(&m, &m, data, &m, ipiv, &info); }
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
if (m) { zgetrf_(&m, &m, data, &m, ipiv, &info); }
|
||||
#endif
|
||||
if (m) { MFEM_LAPACK_COMPLEX(getrf_)(&m, &m, data, &m, ipiv, &info); }
|
||||
return info == 0;
|
||||
#else
|
||||
// compiling without LAPACK
|
||||
@@ -659,13 +586,10 @@ void ComplexLUFactors::Solve(int m, int n, real_t *X_r, real_t * X_i) const
|
||||
std::complex<real_t> * x = ComplexFactors::RealToComplex(m*n,X_r,X_i);
|
||||
char trans = 'N';
|
||||
int info = 0;
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
if (m > 0 && n > 0) { cgetrs_(&trans, &m, &n, data, &m, ipiv, x, &m, &info); }
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
if (m > 0 && n > 0) { zgetrs_(&trans, &m, &n, data, &m, ipiv, x, &m, &info); }
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
if (m > 0 && n > 0)
|
||||
{
|
||||
MFEM_LAPACK_COMPLEX(getrs_)(&trans, &m, &n, data, &m, ipiv, x, &m, &info);
|
||||
}
|
||||
MFEM_VERIFY(!info, "LAPACK: error in ZGETRS");
|
||||
ComplexFactors::ComplexToReal(m*n,x,X_r,X_i);
|
||||
delete [] x;
|
||||
@@ -685,15 +609,8 @@ void ComplexLUFactors::RightSolve(int m, int n, real_t *X_r, real_t * X_i) const
|
||||
if (m > 0 && n > 0)
|
||||
{
|
||||
std::complex<real_t> alpha(1.0,0.0);
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
ctrsm_(&side,&u_ch,&n_ch,&n_ch,&n,&m,&alpha,data,&m,X,&n);
|
||||
ctrsm_(&side,&l_ch,&n_ch,&u_ch,&n,&m,&alpha,data,&m,X,&n);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
ztrsm_(&side,&u_ch,&n_ch,&n_ch,&n,&m,&alpha,data,&m,X,&n);
|
||||
ztrsm_(&side,&l_ch,&n_ch,&u_ch,&n,&m,&alpha,data,&m,X,&n);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_COMPLEX(trsm_)(&side,&u_ch,&n_ch,&n_ch,&n,&m,&alpha,data,&m,X,&n);
|
||||
MFEM_LAPACK_COMPLEX(trsm_)(&side,&l_ch,&n_ch,&u_ch,&n,&m,&alpha,data,&m,X,&n);
|
||||
}
|
||||
#else
|
||||
// compiling without LAPACK
|
||||
@@ -815,13 +732,7 @@ bool ComplexCholeskyFactors::Factor(int m, real_t TOL)
|
||||
int info = 0;
|
||||
char uplo = 'L';
|
||||
MFEM_VERIFY(data, "Matrix data not set");
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
if (m) {cpotrf_(&uplo, &m, data, &m, &info);}
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
if (m) {zpotrf_(&uplo, &m, data, &m, &info);}
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
if (m) { MFEM_LAPACK_COMPLEX(potrf_)(&uplo, &m, data, &m, &info); }
|
||||
return info == 0;
|
||||
#else
|
||||
// Cholesky–Crout algorithm
|
||||
@@ -921,13 +832,8 @@ void ComplexCholeskyFactors::LSolve(int m, int n, real_t * X_r,
|
||||
char diag = 'N';
|
||||
int info = 0;
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
ctrtrs_(&uplo, &trans, &diag, &m, &n, data, &m, x, &m, &info);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
ztrtrs_(&uplo, &trans, &diag, &m, &n, data, &m, x, &m, &info);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_COMPLEX(trtrs_)(&uplo, &trans, &diag, &m, &n, data, &m, x, &m,
|
||||
&info);
|
||||
MFEM_VERIFY(!info, "ComplexCholeskyFactors:LSolve:: info");
|
||||
#else
|
||||
for (int k = 0; k < n; k++)
|
||||
@@ -960,13 +866,8 @@ void ComplexCholeskyFactors::USolve(int m, int n, real_t * X_r,
|
||||
char diag = 'N';
|
||||
int info = 0;
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
ctrtrs_(&uplo, &trans, &diag, &m, &n, data, &m, x, &m, &info);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
ztrtrs_(&uplo, &trans, &diag, &m, &n, data, &m, x, &m, &info);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_COMPLEX(trtrs_)(&uplo, &trans, &diag, &m, &n, data, &m, x, &m,
|
||||
&info);
|
||||
MFEM_VERIFY(!info, "ComplexCholeskyFactors:USolve:: info");
|
||||
#else
|
||||
// X <- L^{-t} X
|
||||
@@ -994,13 +895,7 @@ void ComplexCholeskyFactors::Solve(int m, int n, real_t * X_r,
|
||||
char uplo = 'L';
|
||||
int info = 0;
|
||||
std::complex<real_t> *x = ComplexFactors::RealToComplex(m*n,X_r,X_i);
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
cpotrs_(&uplo, &m, &n, data, &m, x, &m, &info);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
zpotrs_(&uplo, &m, &n, data, &m, x, &m, &info);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_COMPLEX(potrs_)(&uplo, &m, &n, data, &m, x, &m, &info);
|
||||
MFEM_VERIFY(!info, "ComplexCholeskyFactors:Solve:: info");
|
||||
ComplexFactors::ComplexToReal(m*n,x,X_r,X_i);
|
||||
delete x;
|
||||
@@ -1026,15 +921,8 @@ void ComplexCholeskyFactors::RightSolve(int m, int n, real_t * X_r,
|
||||
std::complex<real_t> alpha(1.0,0.0);
|
||||
if (m > 0 && n > 0)
|
||||
{
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
ctrsm_(&side,&uplo,&transt,&diag,&n,&m,&alpha,data,&m,x,&n);
|
||||
ctrsm_(&side,&uplo,&trans,&diag,&n,&m,&alpha,data,&m,x,&n);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
ztrsm_(&side,&uplo,&transt,&diag,&n,&m,&alpha,data,&m,x,&n);
|
||||
ztrsm_(&side,&uplo,&trans,&diag,&n,&m,&alpha,data,&m,x,&n);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_COMPLEX(trsm_)(&side,&uplo,&transt,&diag,&n,&m,&alpha,data,&m,x,&n);
|
||||
MFEM_LAPACK_COMPLEX(trsm_)(&side,&uplo,&trans,&diag,&n,&m,&alpha,data,&m,x,&n);
|
||||
}
|
||||
#else
|
||||
// X <- X L^{-H}
|
||||
@@ -1085,13 +973,7 @@ void ComplexCholeskyFactors::GetInverseMatrix(int m, real_t * X_r,
|
||||
}
|
||||
char uplo = 'L';
|
||||
int info = 0;
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
cpotri_(&uplo, &m, X, &m, &info);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
zpotri_(&uplo, &m, X, &m, &info);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_COMPLEX(potri_)(&uplo, &m, X, &m, &info);
|
||||
MFEM_VERIFY(!info, "ComplexCholeskyFactors:GetInverseMatrix:: info");
|
||||
// fill in the upper triangular part
|
||||
for (int i = 0; i<m; i++)
|
||||
|
||||
+69
-355
@@ -17,6 +17,7 @@
|
||||
#include "vector.hpp"
|
||||
#include "matrix.hpp"
|
||||
#include "densemat.hpp"
|
||||
#include "lapack.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "../general/table.hpp"
|
||||
#include "../general/globals.hpp"
|
||||
@@ -32,103 +33,6 @@
|
||||
#endif
|
||||
|
||||
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
extern "C" void
|
||||
sgemm_(char *, char *, int *, int *, int *, float *, float *,
|
||||
int *, float *, int *, float *, float *, int *);
|
||||
extern "C" void
|
||||
sgetrf_(int *, int *, float *, int *, int *, int *);
|
||||
extern "C" void
|
||||
sgetrs_(char *, int *, int *, float *, int *, int *, float *, int *, int *);
|
||||
extern "C" void
|
||||
sgetri_(int *N, float *A, int *LDA, int *IPIV, float *WORK,
|
||||
int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
ssyevr_(char *JOBZ, char *RANGE, char *UPLO, int *N, float *A, int *LDA,
|
||||
float *VL, float *VU, int *IL, int *IU, float *ABSTOL, int *M,
|
||||
float *W, float *Z, int *LDZ, int *ISUPPZ, float *WORK, int *LWORK,
|
||||
int *IWORK, int *LIWORK, int *INFO);
|
||||
extern "C" void
|
||||
ssyev_(char *JOBZ, char *UPLO, int *N, float *A, int *LDA, float *W,
|
||||
float *WORK, int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
ssygv_ (int *ITYPE, char *JOBZ, char *UPLO, int * N, float *A, int *LDA,
|
||||
float *B, int *LDB, float *W, float *WORK, int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
sgesvd_(char *JOBU, char *JOBVT, int *M, int *N, float *A, int *LDA,
|
||||
float *S, float *U, int *LDU, float *VT, int *LDVT, float *WORK,
|
||||
int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
strsm_(char *side, char *uplo, char *transa, char *diag, int *m, int *n,
|
||||
float *alpha, float *a, int *lda, float *b, int *ldb);
|
||||
extern "C" void
|
||||
sggev_(char *jobvl, char *jobvr, int *n, float *a, int *lda, float *B,
|
||||
int *ldb, float *alphar, float *alphai, float *beta, float *vl,
|
||||
int * ldvl, float * vr, int * ldvr, float * work, int * lwork, int* info);
|
||||
|
||||
// Cholesky factorizations/solves
|
||||
extern "C" void
|
||||
spotrf_(char *, int *, float *, int *, int *);
|
||||
// Solve
|
||||
extern "C" void
|
||||
spotrs_(char *, int *, int *, float *, int *, float *, int *, int *);
|
||||
// Triangular Solves
|
||||
extern "C" void
|
||||
strtrs_(char *, char*, char *, int *, int *, float *, int *, float *, int *,
|
||||
int *);
|
||||
extern "C" void
|
||||
spotri_(char *, int *, float *, int*, int *);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
extern "C" void
|
||||
dgemm_(char *, char *, int *, int *, int *, double *, double *,
|
||||
int *, double *, int *, double *, double *, int *);
|
||||
extern "C" void
|
||||
dgetrf_(int *, int *, double *, int *, int *, int *);
|
||||
extern "C" void
|
||||
dgetrs_(char *, int *, int *, double *, int *, int *, double *, int *, int *);
|
||||
extern "C" void
|
||||
dgetri_(int *N, double *A, int *LDA, int *IPIV, double *WORK,
|
||||
int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
dsyevr_(char *JOBZ, char *RANGE, char *UPLO, int *N, double *A, int *LDA,
|
||||
double *VL, double *VU, int *IL, int *IU, double *ABSTOL, int *M,
|
||||
double *W, double *Z, int *LDZ, int *ISUPPZ, double *WORK, int *LWORK,
|
||||
int *IWORK, int *LIWORK, int *INFO);
|
||||
extern "C" void
|
||||
dsyev_(char *JOBZ, char *UPLO, int *N, double *A, int *LDA, double *W,
|
||||
double *WORK, int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
dsygv_ (int *ITYPE, char *JOBZ, char *UPLO, int * N, double *A, int *LDA,
|
||||
double *B, int *LDB, double *W, double *WORK, int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
dgesvd_(char *JOBU, char *JOBVT, int *M, int *N, double *A, int *LDA,
|
||||
double *S, double *U, int *LDU, double *VT, int *LDVT, double *WORK,
|
||||
int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
dtrsm_(char *side, char *uplo, char *transa, char *diag, int *m, int *n,
|
||||
double *alpha, double *a, int *lda, double *b, int *ldb);
|
||||
extern "C" void
|
||||
dggev_(char *jobvl, char *jobvr, int *n, double *a, int *lda, double *B,
|
||||
int *ldb, double *alphar, double *alphai, double *beta, double *vl,
|
||||
int * ldvl, double * vr, int * ldvr, double * work, int * lwork, int* info);
|
||||
|
||||
// Cholesky factorizations/solves
|
||||
extern "C" void
|
||||
dpotrf_(char *, int *, double *, int *, int *);
|
||||
// Solve
|
||||
extern "C" void
|
||||
dpotrs_(char *, int *, int *, double *, int *, double *, int *, int *);
|
||||
// Triangular Solves
|
||||
extern "C" void
|
||||
dtrtrs_(char *, char*, char *, int *, int *, double *, int *, double *, int *,
|
||||
int *);
|
||||
extern "C" void
|
||||
dpotri_(char *, int *, double *, int*, int *);
|
||||
#endif
|
||||
#endif
|
||||
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
@@ -801,36 +705,19 @@ void DenseMatrix::Invert()
|
||||
real_t qwork, *work;
|
||||
int info;
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgetrf_(&width, &width, data, &width, ipiv, &info);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgetrf_(&width, &width, data, &width, ipiv, &info);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_PREFIX(getrf_)(&width, &width, data, &width, ipiv, &info);
|
||||
|
||||
if (info)
|
||||
{
|
||||
mfem_error("DenseMatrix::Invert() : Error in DGETRF");
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgetri_(&width, data, &width, ipiv, &qwork, &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(getri_)(&width, data, &width, ipiv, &qwork, &lwork, &info);
|
||||
|
||||
lwork = (int) qwork;
|
||||
work = new float[lwork];
|
||||
work = new real_t[lwork];
|
||||
|
||||
sgetri_(&width, data, &width, ipiv, work, &lwork, &info);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgetri_(&width, data, &width, ipiv, &qwork, &lwork, &info);
|
||||
|
||||
lwork = (int) qwork;
|
||||
work = new double[lwork];
|
||||
|
||||
dgetri_(&width, data, &width, ipiv, work, &lwork, &info);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_PREFIX(getri_)(&width, data, &width, ipiv, work, &lwork, &info);
|
||||
|
||||
if (info)
|
||||
{
|
||||
@@ -1066,15 +953,9 @@ void dsyevr_Eigensystem(DenseMatrix &a, Vector &ev, DenseMatrix *evect)
|
||||
A[i] = data[i];
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
ssyevr_( &JOBZ, &RANGE, &UPLO, &N, A, &LDA, &VL, &VU, &IL, &IU,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dsyevr_( &JOBZ, &RANGE, &UPLO, &N, A, &LDA, &VL, &VU, &IL, &IU,
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
&ABSTOL, &M, W, Z, &LDZ, ISUPPZ, &QWORK, &LWORK,
|
||||
&QIWORK, &LIWORK, &INFO );
|
||||
MFEM_LAPACK_PREFIX(syevr_)(&JOBZ, &RANGE, &UPLO, &N, A, &LDA, &VL, &VU, &IL,
|
||||
&IU, &ABSTOL, &M, W, Z, &LDZ, ISUPPZ, &QWORK,
|
||||
&LWORK, &QIWORK, &LIWORK, &INFO);
|
||||
|
||||
LWORK = (int) QWORK;
|
||||
LIWORK = QIWORK;
|
||||
@@ -1082,15 +963,9 @@ void dsyevr_Eigensystem(DenseMatrix &a, Vector &ev, DenseMatrix *evect)
|
||||
WORK = new real_t[LWORK];
|
||||
IWORK = new int[LIWORK];
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
ssyevr_( &JOBZ, &RANGE, &UPLO, &N, A, &LDA, &VL, &VU, &IL, &IU,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dsyevr_( &JOBZ, &RANGE, &UPLO, &N, A, &LDA, &VL, &VU, &IL, &IU,
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
&ABSTOL, &M, W, Z, &LDZ, ISUPPZ, WORK, &LWORK,
|
||||
IWORK, &LIWORK, &INFO );
|
||||
MFEM_LAPACK_PREFIX(syevr_)(&JOBZ, &RANGE, &UPLO, &N, A, &LDA, &VL, &VU, &IL,
|
||||
&IU, &ABSTOL, &M, W, Z, &LDZ, ISUPPZ, WORK,
|
||||
&LWORK, IWORK, &LIWORK, &INFO);
|
||||
|
||||
if (INFO != 0)
|
||||
{
|
||||
@@ -1230,24 +1105,12 @@ void dsyev_Eigensystem(DenseMatrix &a, Vector &ev, DenseMatrix *evect)
|
||||
A[i] = data[i];
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
ssyev_(&JOBZ, &UPLO, &N, A, &LDA, W, &QWORK, &LWORK, &INFO);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dsyev_(&JOBZ, &UPLO, &N, A, &LDA, W, &QWORK, &LWORK, &INFO);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_PREFIX(syev_)(&JOBZ, &UPLO, &N, A, &LDA, W, &QWORK, &LWORK, &INFO);
|
||||
|
||||
LWORK = (int) QWORK;
|
||||
WORK = new real_t[LWORK];
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
ssyev_(&JOBZ, &UPLO, &N, A, &LDA, W, WORK, &LWORK, &INFO);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dsyev_(&JOBZ, &UPLO, &N, A, &LDA, W, WORK, &LWORK, &INFO);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_PREFIX(syev_)(&JOBZ, &UPLO, &N, A, &LDA, W, WORK, &LWORK, &INFO);
|
||||
|
||||
if (INFO != 0)
|
||||
{
|
||||
@@ -1322,24 +1185,14 @@ void dsygv_Eigensystem(DenseMatrix &a, DenseMatrix &b, Vector &ev,
|
||||
B[i] = b_data[i];
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
ssygv_(&ITYPE, &JOBZ, &UPLO, &N, A, &LDA, B, &LDB, W, &QWORK, &LWORK, &INFO);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dsygv_(&ITYPE, &JOBZ, &UPLO, &N, A, &LDA, B, &LDB, W, &QWORK, &LWORK, &INFO);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_PREFIX(sygv_)(&ITYPE, &JOBZ, &UPLO, &N, A, &LDA, B, &LDB, W,
|
||||
&QWORK, &LWORK, &INFO);
|
||||
|
||||
LWORK = (int) QWORK;
|
||||
WORK = new real_t[LWORK];
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
ssygv_(&ITYPE, &JOBZ, &UPLO, &N, A, &LDA, B, &LDB, W, WORK, &LWORK, &INFO);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dsygv_(&ITYPE, &JOBZ, &UPLO, &N, A, &LDA, B, &LDB, W, WORK, &LWORK, &INFO);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_PREFIX(sygv_)(&ITYPE, &JOBZ, &UPLO, &N, A, &LDA, B, &LDB, W, WORK,
|
||||
&LWORK, &INFO);
|
||||
|
||||
if (INFO != 0)
|
||||
{
|
||||
@@ -1391,26 +1244,14 @@ void DenseMatrix::SingularValues(Vector &sv) const
|
||||
int info;
|
||||
real_t qwork;
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgesvd_(&jobu, &jobvt, &m, &n, a, &m,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgesvd_(&jobu, &jobvt, &m, &n, a, &m,
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
s, u, &m, vt, &n, &qwork, &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(gesvd_)(&jobu, &jobvt, &m, &n, a, &m, s, u, &m, vt, &n,
|
||||
&qwork, &lwork, &info);
|
||||
|
||||
lwork = (int) qwork;
|
||||
work = new real_t[lwork];
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgesvd_(&jobu, &jobvt, &m, &n, a, &m,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgesvd_(&jobu, &jobvt, &m, &n, a, &m,
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
s, u, &m, vt, &n, work, &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(gesvd_)(&jobu, &jobvt, &m, &n, a, &m, s, u, &m, vt, &n,
|
||||
work, &lwork, &info);
|
||||
|
||||
delete [] work;
|
||||
if (info)
|
||||
@@ -2573,14 +2414,8 @@ void Mult(const DenseMatrix &b, const DenseMatrix &c, DenseMatrix &a)
|
||||
static real_t alpha = 1.0, beta = 0.0;
|
||||
int m = b.Height(), n = c.Width(), k = b.Width();
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgemm_(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgemm_(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
c.Data(), &k, &beta, a.Data(), &m);
|
||||
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
|
||||
c.Data(), &k, &beta, a.Data(), &m);
|
||||
#else
|
||||
const int ah = a.Height();
|
||||
const int aw = a.Width();
|
||||
@@ -2603,14 +2438,8 @@ void AddMult_a(real_t alpha, const DenseMatrix &b, const DenseMatrix &c,
|
||||
static real_t beta = 1.0;
|
||||
int m = b.Height(), n = c.Width(), k = b.Width();
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgemm_(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgemm_(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
c.Data(), &k, &beta, a.Data(), &m);
|
||||
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
|
||||
c.Data(), &k, &beta, a.Data(), &m);
|
||||
#else
|
||||
const int ah = a.Height();
|
||||
const int aw = a.Width();
|
||||
@@ -2641,12 +2470,8 @@ void AddMult(const DenseMatrix &b, const DenseMatrix &c, DenseMatrix &a)
|
||||
static real_t alpha = 1.0, beta = 1.0;
|
||||
int m = b.Height(), n = c.Width(), k = b.Width();
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgemm_(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgemm_(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
|
||||
#endif
|
||||
c.Data(), &k, &beta, a.Data(), &m);
|
||||
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
|
||||
c.Data(), &k, &beta, a.Data(), &m);
|
||||
#else
|
||||
const int ah = a.Height();
|
||||
const int aw = a.Width();
|
||||
@@ -2965,12 +2790,8 @@ void MultABt(const DenseMatrix &A, const DenseMatrix &B, DenseMatrix &ABt)
|
||||
static real_t alpha = 1.0, beta = 0.0;
|
||||
int m = A.Height(), n = B.Height(), k = A.Width();
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
|
||||
#endif
|
||||
B.Data(), &n, &beta, ABt.Data(), &m);
|
||||
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
|
||||
B.Data(), &n, &beta, ABt.Data(), &m);
|
||||
#elif 1
|
||||
const int ah = A.Height();
|
||||
const int bh = B.Height();
|
||||
@@ -3074,12 +2895,8 @@ void AddMultABt(const DenseMatrix &A, const DenseMatrix &B, DenseMatrix &ABt)
|
||||
static real_t alpha = 1.0, beta = 1.0;
|
||||
int m = A.Height(), n = B.Height(), k = A.Width();
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
|
||||
#endif
|
||||
B.Data(), &n, &beta, ABt.Data(), &m);
|
||||
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
|
||||
B.Data(), &n, &beta, ABt.Data(), &m);
|
||||
#elif 1
|
||||
const int ah = A.Height();
|
||||
const int bh = B.Height();
|
||||
@@ -3173,12 +2990,8 @@ void AddMult_a_ABt(real_t a, const DenseMatrix &A, const DenseMatrix &B,
|
||||
static real_t beta = 1.0;
|
||||
int m = A.Height(), n = B.Height(), k = A.Width();
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
|
||||
#endif
|
||||
B.Data(), &n, &beta, ABt.Data(), &m);
|
||||
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
|
||||
B.Data(), &n, &beta, ABt.Data(), &m);
|
||||
#elif 1
|
||||
const int ah = A.Height();
|
||||
const int bh = B.Height();
|
||||
@@ -3234,12 +3047,8 @@ void MultAtB(const DenseMatrix &A, const DenseMatrix &B, DenseMatrix &AtB)
|
||||
static real_t alpha = 1.0, beta = 0.0;
|
||||
int m = A.Width(), n = B.Width(), k = A.Height();
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
|
||||
#endif
|
||||
B.Data(), &k, &beta, AtB.Data(), &m);
|
||||
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
|
||||
B.Data(), &k, &beta, AtB.Data(), &m);
|
||||
#elif 1
|
||||
const int ah = A.Height();
|
||||
const int aw = A.Width();
|
||||
@@ -3291,12 +3100,8 @@ void AddMultAtB(const DenseMatrix &A, const DenseMatrix &B,
|
||||
static real_t alpha = 1.0, beta = 1.0;
|
||||
int m = A.Width(), n = B.Width(), k = A.Height();
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
|
||||
#endif
|
||||
B.Data(), &k, &beta, AtB.Data(), &m);
|
||||
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
|
||||
B.Data(), &k, &beta, AtB.Data(), &m);
|
||||
#else
|
||||
const int ah = A.Height();
|
||||
const int aw = A.Width();
|
||||
@@ -3335,12 +3140,8 @@ void AddMult_a_AtB(real_t a, const DenseMatrix &A, const DenseMatrix &B,
|
||||
static real_t beta = 1.0;
|
||||
int m = A.Width(), n = B.Width(), k = A.Height();
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
|
||||
#endif
|
||||
B.Data(), &k, &beta, AtB.Data(), &m);
|
||||
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
|
||||
B.Data(), &k, &beta, AtB.Data(), &m);
|
||||
#else
|
||||
const int ah = A.Height();
|
||||
const int aw = A.Width();
|
||||
@@ -3545,13 +3346,7 @@ bool LUFactors::Factor(int m, real_t TOL)
|
||||
{
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
int info = 0;
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
if (m) { sgetrf_(&m, &m, data, &m, ipiv, &info); }
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
if (m) { dgetrf_(&m, &m, data, &m, ipiv, &info); }
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
if (m) { MFEM_LAPACK_PREFIX(getrf_)(&m, &m, data, &m, ipiv, &info); }
|
||||
return info == 0;
|
||||
#else
|
||||
// compiling without LAPACK
|
||||
@@ -3703,13 +3498,10 @@ void LUFactors::Solve(int m, int n, real_t *X) const
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
char trans = 'N';
|
||||
int info = 0;
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
if (m > 0 && n > 0) { sgetrs_(&trans, &m, &n, data, &m, ipiv, X, &m, &info); }
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
if (m > 0 && n > 0) { dgetrs_(&trans, &m, &n, data, &m, ipiv, X, &m, &info); }
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
if (m > 0 && n > 0)
|
||||
{
|
||||
MFEM_LAPACK_PREFIX(getrs_)(&trans, &m, &n, data, &m, ipiv, X, &m, &info);
|
||||
}
|
||||
MFEM_VERIFY(!info, "LAPACK: error in DGETRS");
|
||||
#else
|
||||
// compiling without LAPACK
|
||||
@@ -3726,15 +3518,8 @@ void LUFactors::RightSolve(int m, int n, real_t *X) const
|
||||
real_t alpha = 1.0;
|
||||
if (m > 0 && n > 0)
|
||||
{
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
strsm_(&side,&u_ch,&n_ch,&n_ch,&n,&m,&alpha,data,&m,X,&n);
|
||||
strsm_(&side,&l_ch,&n_ch,&u_ch,&n,&m,&alpha,data,&m,X,&n);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dtrsm_(&side,&u_ch,&n_ch,&n_ch,&n,&m,&alpha,data,&m,X,&n);
|
||||
dtrsm_(&side,&l_ch,&n_ch,&u_ch,&n,&m,&alpha,data,&m,X,&n);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_PREFIX(trsm_)(&side,&u_ch,&n_ch,&n_ch,&n,&m,&alpha,data,&m,X,&n);
|
||||
MFEM_LAPACK_PREFIX(trsm_)(&side,&l_ch,&n_ch,&u_ch,&n,&m,&alpha,data,&m,X,&n);
|
||||
}
|
||||
#else
|
||||
// compiling without LAPACK
|
||||
@@ -3911,13 +3696,7 @@ bool CholeskyFactors::Factor(int m, real_t TOL)
|
||||
int info = 0;
|
||||
char uplo = 'L';
|
||||
MFEM_VERIFY(data, "Matrix data not set");
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
if (m) {spotrf_(&uplo, &m, data, &m, &info);}
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
if (m) {dpotrf_(&uplo, &m, data, &m, &info);}
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
if (m) { MFEM_LAPACK_PREFIX(potrf_)(&uplo, &m, data, &m, &info); }
|
||||
return info == 0;
|
||||
#else
|
||||
// Cholesky–Crout algorithm
|
||||
@@ -4009,13 +3788,8 @@ void CholeskyFactors::LSolve(int m, int n, real_t * X) const
|
||||
char diag = 'N';
|
||||
int info = 0;
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
strtrs_(&uplo, &trans, &diag, &m, &n, data, &m, X, &m, &info);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dtrtrs_(&uplo, &trans, &diag, &m, &n, data, &m, X, &m, &info);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_PREFIX(trtrs_)(&uplo, &trans, &diag, &m, &n, data, &m, X, &m,
|
||||
&info);
|
||||
MFEM_VERIFY(!info, "CholeskyFactors:LSolve:: info");
|
||||
|
||||
#else
|
||||
@@ -4045,13 +3819,8 @@ void CholeskyFactors::USolve(int m, int n, real_t * X) const
|
||||
char diag = 'N';
|
||||
int info = 0;
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
strtrs_(&uplo, &trans, &diag, &m, &n, data, &m, X, &m, &info);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dtrtrs_(&uplo, &trans, &diag, &m, &n, data, &m, X, &m, &info);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_PREFIX(trtrs_)(&uplo, &trans, &diag, &m, &n, data, &m, X, &m,
|
||||
&info);
|
||||
MFEM_VERIFY(!info, "CholeskyFactors:USolve:: info");
|
||||
|
||||
#else
|
||||
@@ -4077,13 +3846,7 @@ void CholeskyFactors::Solve(int m, int n, real_t * X) const
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
char uplo = 'L';
|
||||
int info = 0;
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
spotrs_(&uplo, &m, &n, data, &m, X, &m, &info);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dpotrs_(&uplo, &m, &n, data, &m, X, &m, &info);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_PREFIX(potrs_)(&uplo, &m, &n, data, &m, X, &m, &info);
|
||||
MFEM_VERIFY(!info, "CholeskyFactors:Solve:: info");
|
||||
|
||||
#else
|
||||
@@ -4104,15 +3867,8 @@ void CholeskyFactors::RightSolve(int m, int n, real_t * X) const
|
||||
real_t alpha = 1.0;
|
||||
if (m > 0 && n > 0)
|
||||
{
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
strsm_(&side,&uplo,&transt,&diag,&n,&m,&alpha,data,&m,X,&n);
|
||||
strsm_(&side,&uplo,&trans,&diag,&n,&m,&alpha,data,&m,X,&n);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dtrsm_(&side,&uplo,&transt,&diag,&n,&m,&alpha,data,&m,X,&n);
|
||||
dtrsm_(&side,&uplo,&trans,&diag,&n,&m,&alpha,data,&m,X,&n);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_PREFIX(trsm_)(&side,&uplo,&transt,&diag,&n,&m,&alpha,data,&m,X,&n);
|
||||
MFEM_LAPACK_PREFIX(trsm_)(&side,&uplo,&trans,&diag,&n,&m,&alpha,data,&m,X,&n);
|
||||
}
|
||||
#else
|
||||
// X <- X L^{-t}
|
||||
@@ -4160,13 +3916,7 @@ void CholeskyFactors::GetInverseMatrix(int m, real_t * X) const
|
||||
}
|
||||
char uplo = 'L';
|
||||
int info = 0;
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
spotri_(&uplo, &m, X, &m, &info);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dpotri_(&uplo, &m, X, &m, &info);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
MFEM_LAPACK_PREFIX(potri_)(&uplo, &m, X, &m, &info);
|
||||
MFEM_VERIFY(!info, "CholeskyFactors:GetInverseMatrix:: info");
|
||||
// fill in the upper triangular part
|
||||
for (int i = 0; i<m; i++)
|
||||
@@ -4350,14 +4100,8 @@ DenseMatrixEigensystem::DenseMatrixEigensystem(DenseMatrix &m)
|
||||
uplo = 'U';
|
||||
lwork = -1;
|
||||
real_t qwork;
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
ssyev_(&jobz, &uplo, &n, EVect.Data(), &n, EVal.GetData(),
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dsyev_(&jobz, &uplo, &n, EVect.Data(), &n, EVal.GetData(),
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
&qwork, &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(syev_)(&jobz, &uplo, &n, EVect.Data(), &n, EVal.GetData(),
|
||||
&qwork, &lwork, &info);
|
||||
|
||||
lwork = (int) qwork;
|
||||
work = new real_t[lwork];
|
||||
@@ -4385,14 +4129,8 @@ void DenseMatrixEigensystem::Eval()
|
||||
#endif
|
||||
|
||||
EVect = mat;
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
ssyev_(&jobz, &uplo, &n, EVect.Data(), &n, EVal.GetData(),
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dsyev_(&jobz, &uplo, &n, EVect.Data(), &n, EVal.GetData(),
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
work, &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(syev_)(&jobz, &uplo, &n, EVect.Data(), &n, EVal.GetData(),
|
||||
work, &lwork, &info);
|
||||
|
||||
if (info != 0)
|
||||
{
|
||||
@@ -4444,15 +4182,9 @@ DenseMatrixGeneralizedEigensystem::DenseMatrixGeneralizedEigensystem(
|
||||
int nl = max(1,Vl.Height());
|
||||
int nr = max(1,Vr.Height());
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sggev_(&jobvl,&jobvr,&n,A_copy.Data(),&n,B_copy.Data(),&n,alphar,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dggev_(&jobvl,&jobvr,&n,A_copy.Data(),&n,B_copy.Data(),&n,alphar,
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
alphai, beta, Vl.Data(), &nl, Vr.Data(), &nr,
|
||||
&qwork, &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(ggev_)(&jobvl,&jobvr,&n,A_copy.Data(),&n,B_copy.Data(),&n,
|
||||
alphar, alphai, beta, Vl.Data(), &nl, Vr.Data(),
|
||||
&nr, &qwork, &lwork, &info);
|
||||
|
||||
lwork = (int) qwork;
|
||||
work = new real_t[lwork];
|
||||
@@ -4465,15 +4197,9 @@ void DenseMatrixGeneralizedEigensystem::Eval()
|
||||
|
||||
A_copy = A;
|
||||
B_copy = B;
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sggev_(&jobvl,&jobvr,&n,A_copy.Data(),&n,B_copy.Data(),&n,alphar,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dggev_(&jobvl,&jobvr,&n,A_copy.Data(),&n,B_copy.Data(),&n,alphar,
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
alphai, beta, Vl.Data(), &nl, Vr.Data(), &nr,
|
||||
work, &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(ggev_)(&jobvl,&jobvr,&n,A_copy.Data(),&n,B_copy.Data(),&n,
|
||||
alphar, alphai, beta, Vl.Data(), &nl, Vr.Data(),
|
||||
&nr, work, &lwork, &info);
|
||||
if (info != 0)
|
||||
{
|
||||
mfem::err << "DenseMatrixGeneralizedEigensystem::Eval(): DGGEV error code: "
|
||||
@@ -4554,14 +4280,8 @@ void DenseMatrixSVD::Init()
|
||||
sv.SetSize(min(m, n));
|
||||
real_t qwork;
|
||||
lwork = -1;
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgesvd_(&jobu, &jobvt, &m, &n, NULL, &m, sv.GetData(), NULL, &m,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgesvd_(&jobu, &jobvt, &m, &n, NULL, &m, sv.GetData(), NULL, &m,
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
NULL, &n, &qwork, &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(gesvd_)(&jobu, &jobvt, &m, &n, NULL, &m, sv.GetData(),
|
||||
NULL, &m, NULL, &n, &qwork, &lwork, &info);
|
||||
lwork = (int) qwork;
|
||||
work = new real_t[lwork];
|
||||
}
|
||||
@@ -4597,14 +4317,8 @@ void DenseMatrixSVD::Eval(DenseMatrix &M)
|
||||
datavt = Vt.Data();
|
||||
}
|
||||
Mc = M;
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgesvd_(&jobu, &jobvt, &m, &n, Mc.Data(), &m, sv.GetData(), datau, &m,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgesvd_(&jobu, &jobvt, &m, &n, Mc.Data(), &m, sv.GetData(), datau, &m,
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
datavt, &n, work, &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(gesvd_)(&jobu, &jobvt, &m, &n, Mc.Data(), &m, sv.GetData(),
|
||||
datau, &m, datavt, &n, work, &lwork, &info);
|
||||
|
||||
if (info)
|
||||
{
|
||||
|
||||
@@ -0,0 +1,134 @@
|
||||
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_LAPACK_HPP
|
||||
#define MFEM_LAPACK_HPP
|
||||
|
||||
#include "../config/config.hpp"
|
||||
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
#define MFEM_LAPACK_PREFIX(stub) s##stub
|
||||
#define MFEM_LAPACK_COMPLEX(stub) c##stub
|
||||
#elif defined(MFEM_USE_DOUBLE)
|
||||
#define MFEM_LAPACK_PREFIX(stub) d##stub
|
||||
#define MFEM_LAPACK_COMPLEX(stub) z##stub
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(gemm_)(char *, char *, int *, int *, int *, real_t *,
|
||||
real_t *, int *, real_t *, int *, real_t *, real_t *,
|
||||
int *);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(getrf_)(int *, int *, real_t *, int *, int *, int *);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(getrs_)(char *, int *, int *, real_t *, int *, int *,
|
||||
real_t *, int *, int *);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(getri_)(int *N, real_t *A, int *LDA, int *IPIV, real_t *WORK,
|
||||
int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(syevr_)(char *JOBZ, char *RANGE, char *UPLO, int *N,
|
||||
real_t *A, int *LDA, real_t *VL, real_t *VU, int *IL,
|
||||
int *IU, real_t *ABSTOL, int *M, real_t *W,
|
||||
real_t *Z, int *LDZ, int *ISUPPZ, real_t *WORK,
|
||||
int *LWORK, int *IWORK, int *LIWORK, int *INFO);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(syev_)(char *JOBZ, char *UPLO, int *N, real_t *A, int *LDA,
|
||||
real_t *W, real_t *WORK, int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(sygv_) (int *ITYPE, char *JOBZ, char *UPLO, int * N,
|
||||
real_t *A, int *LDA, real_t *B, int *LDB, real_t *W,
|
||||
real_t *WORK, int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(gesvd_)(char *JOBU, char *JOBVT, int *M, int *N, real_t *A,
|
||||
int *LDA, real_t *S, real_t *U, int *LDU, real_t *VT,
|
||||
int *LDVT, real_t *WORK, int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(trsm_)(char *side, char *uplo, char *transa, char *diag,
|
||||
int *m, int *n, real_t *alpha, real_t *a, int *lda,
|
||||
real_t *b, int *ldb);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(ggev_)(char *jobvl, char *jobvr, int *n, real_t *a, int *lda,
|
||||
real_t *B, int *ldb, real_t *alphar, real_t *alphai,
|
||||
real_t *beta, real_t *vl, int * ldvl, real_t * vr,
|
||||
int * ldvr, real_t * work, int * lwork, int* info);
|
||||
|
||||
// Cholesky factorizations/solves
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(potrf_)(char *, int *, real_t *, int *, int *);
|
||||
// Solve
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(potrs_)(char *, int *, int *, real_t *, int *, real_t *,
|
||||
int *, int *);
|
||||
// Triangular Solves
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(trtrs_)(char *, char*, char *, int *, int *, real_t *, int *,
|
||||
real_t *, int *, int *);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(potri_)(char *, int *, real_t *, int*, int *);
|
||||
|
||||
// LAPACK routines for NNLSSolver
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(ormqr_)(char *, char *, int *, int *, int *, real_t *, int*,
|
||||
real_t *, real_t *, int *, real_t *, int*, int*);
|
||||
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(geqrf_)(int *, int *, real_t *, int *, real_t *, real_t *,
|
||||
int *, int *);
|
||||
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(gemv_)(char *, int *, int *, real_t *, real_t *, int *,
|
||||
real_t *, int *, real_t *, real_t *, int *);
|
||||
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(trsm_)(char *side, char *uplo, char *transa, char *diag,
|
||||
int *m, int *n, real_t *alpha, real_t *a, int *lda,
|
||||
real_t *b, int *ldb);
|
||||
|
||||
// Complex
|
||||
extern "C" void
|
||||
MFEM_LAPACK_COMPLEX(getrf_)(int *, int *, std::complex<real_t> *, int *, int *,
|
||||
int *);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_COMPLEX(getrs_)(char *, int *, int *, std::complex<real_t> *, int *,
|
||||
int *, std::complex<real_t> *, int *, int *);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_COMPLEX(getri_)(int *, std::complex<real_t> *, int *, int *,
|
||||
std::complex<real_t> *, int *, int *);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_COMPLEX(trsm_)(char *, char *, char *, char *, int *, int *,
|
||||
std::complex<real_t> *, std::complex<real_t> *,
|
||||
int *, std::complex<real_t> *, int *);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_COMPLEX(potrf_)(char *, int *, std::complex<real_t> *, int *,
|
||||
int *);
|
||||
|
||||
extern "C" void
|
||||
MFEM_LAPACK_COMPLEX(trtrs_)(char *, char*, char *, int *, int *,
|
||||
std::complex<real_t> *, int *,
|
||||
std::complex<real_t> *, int *, int *);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_COMPLEX(potri_)(char *, int *, std::complex<real_t> *, int*, int *);
|
||||
|
||||
extern "C" void
|
||||
MFEM_LAPACK_COMPLEX(potrs_)(char *, int *, int *, std::complex<real_t> *, int *,
|
||||
std::complex<real_t> *, int *, int *);
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
|
||||
#endif
|
||||
+29
-10
@@ -420,8 +420,9 @@ public:
|
||||
/** @brief Perform the action of the explicit part of the operator, G:
|
||||
@a v = G(@a u, t) where t is the current time.
|
||||
|
||||
Presently, this method is used by some PETSc ODE solvers, for more
|
||||
details, see the PETSc Manual. */
|
||||
Presently, this method is used by some PETSc ODE solvers and the
|
||||
SUNDIALS ARKStep integrator, for more details, see either the PETSc
|
||||
Manual or the ARKode User Guide, respectively. */
|
||||
virtual void ExplicitMult(const Vector &u, Vector &v) const;
|
||||
|
||||
/** @brief Perform the action of the implicit part of the operator, F:
|
||||
@@ -445,7 +446,7 @@ public:
|
||||
|
||||
Regardless of the choice of F and G, this function should always compute
|
||||
@a k = inv(M) g(@a u, t). */
|
||||
virtual void Mult(const Vector &u, Vector &v) const override;
|
||||
virtual void Mult(const Vector &u, Vector &k) const override;
|
||||
|
||||
/** @brief Solve for the unknown @a k, at the current time t, the following
|
||||
equation:
|
||||
@@ -496,7 +497,17 @@ public:
|
||||
details, see the PETSc Manual. */
|
||||
virtual Operator& GetExplicitGradient(const Vector &u) const;
|
||||
|
||||
/** @brief Setup a linear system as needed by some SUNDIALS ODE solvers.
|
||||
/** @brief Setup a linear system as needed by some SUNDIALS ODE solvers to
|
||||
perform a similar action to ImplicitSolve, i.e., solve for k, at the
|
||||
current time t, in F(u + gamma k, k, t) = G(u + gamma k, t).
|
||||
|
||||
The SUNDIALS ODE solvers iteratively solve for k, as knew = kold + dk.
|
||||
The linear system here is for dk, obtained by linearizing the nonlinear
|
||||
system F(u + gamma knew, knew, t) = G(u + gamma knew, t) about dk = 0:
|
||||
F(u + gamma (kold + dk), kold + dk, t) = G(u + gamma (kold + dk), t)
|
||||
=> [dF/dk + gamma (dF/du - dG/du)] dk = G - F + O(dk^2)
|
||||
In other words, the linear system to be setup here is A dk = r, where
|
||||
A = [dF/dk + gamma (dF/du - dG/du)] and r = G - F.
|
||||
|
||||
For solving an ordinary differential equation of the form
|
||||
$ M \frac{dy}{dt} = g(y,t) $, recall that F and G can be defined as one
|
||||
@@ -506,7 +517,7 @@ public:
|
||||
2. F(u,k,t) = M k and G(u,t) = g(u,t)
|
||||
3. F(u,k,t) = M k - g(u,t) and G(u,t) = 0
|
||||
|
||||
This function performs setup to solve $ A x = b $ where A is either
|
||||
This function performs setup to solve $ A dk = r $ where A is either
|
||||
|
||||
1. A(@a y,t) = I - @a gamma inv(M) J(@a y,t)
|
||||
2. A(@a y,t) = M - @a gamma J(@a y,t)
|
||||
@@ -527,18 +538,26 @@ public:
|
||||
virtual int SUNImplicitSetup(const Vector &y, const Vector &v,
|
||||
int jok, int *jcur, real_t gamma);
|
||||
|
||||
/** @brief Solve the ODE linear system A @a x = @a b, where A is defined by
|
||||
the method SUNImplicitSetup().
|
||||
/** @brief Solve the ODE linear system A @a dk = @a r , where A and r are
|
||||
defined by the method SUNImplicitSetup().
|
||||
|
||||
@param[in] b The linear system right-hand side.
|
||||
@param[in,out] x On input, the initial guess. On output, the solution.
|
||||
For solving an ordinary differential equation of the form
|
||||
$ M \frac{dy}{dt} = g(y,t) $, recall that F and G can be defined as one
|
||||
of the following:
|
||||
|
||||
1. F(u,k,t) = k and G(u,t) = inv(M) g(u,t)
|
||||
2. F(u,k,t) = M k and G(u,t) = g(u,t)
|
||||
3. F(u,k,t) = M k - g(u,t) and G(u,t) = 0
|
||||
|
||||
@param[in] r inv(M) g(y,t) - k for 1 or g(y,t) - M k for 2 & 3.
|
||||
@param[in,out] dk On input, the initial guess. On output, the solution.
|
||||
@param[in] tol Linear solve tolerance.
|
||||
|
||||
If not re-implemented, this method simply generates an error.
|
||||
|
||||
Presently, this method is used by SUNDIALS ODE solvers, for more
|
||||
details, see the SUNDIALS User Guides. */
|
||||
virtual int SUNImplicitSolve(const Vector &b, Vector &x, real_t tol);
|
||||
virtual int SUNImplicitSolve(const Vector &r, Vector &dk, real_t tol);
|
||||
|
||||
/** @brief Setup the mass matrix in the ODE system
|
||||
$ M \frac{dy}{dt} = g(y,t) $ .
|
||||
|
||||
+53
-138
@@ -10,6 +10,7 @@
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "linalg.hpp"
|
||||
#include "lapack.hpp"
|
||||
#include "../general/annotation.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "../general/globals.hpp"
|
||||
@@ -3543,38 +3544,6 @@ void AuxSpaceSmoother::Mult(const Vector &x, Vector &y, bool transpose) const
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
// LAPACK routines for NNLSSolver
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
extern "C" void
|
||||
sormqr_(char *, char *, int *, int *, int *, float *, int*, float *,
|
||||
float *, int *, float *, int*, int*);
|
||||
|
||||
extern "C" void
|
||||
sgeqrf_(int *, int *, float *, int *, float *, float *, int *, int *);
|
||||
|
||||
extern "C" void
|
||||
sgemv_(char *, int *, int *, float *, float *, int *, float *, int *,
|
||||
float *, float *, int *);
|
||||
|
||||
extern "C" void
|
||||
strsm_(char *side, char *uplo, char *transa, char *diag, int *m, int *n,
|
||||
float *alpha, float *a, int *lda, float *b, int *ldb);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
extern "C" void
|
||||
dormqr_(char *, char *, int *, int *, int *, double *, int*, double *,
|
||||
double *, int *, double *, int*, int*);
|
||||
|
||||
extern "C" void
|
||||
dgeqrf_(int *, int *, double *, int *, double *, double *, int *, int *);
|
||||
|
||||
extern "C" void
|
||||
dgemv_(char *, int *, int *, double *, double *, int *, double *, int *,
|
||||
double *, double *, int *);
|
||||
|
||||
extern "C" void
|
||||
dtrsm_(char *side, char *uplo, char *transa, char *diag, int *m, int *n,
|
||||
double *alpha, double *a, int *lda, double *b, int *ldb);
|
||||
#endif
|
||||
|
||||
NNLSSolver::NNLSSolver()
|
||||
: Solver(0), mat(nullptr), const_tol_(1.0e-14), min_nnz_(0),
|
||||
@@ -3938,25 +3907,19 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
|
||||
lwork = -1;
|
||||
work.resize(10);
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sormqr_(&lside, &trans, &m, &n_update, &i_qr_start,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dormqr_(&lside, &trans, &m, &n_update, &i_qr_start,
|
||||
#endif
|
||||
mat_qr_data.GetData(), &m, tau.GetData(),
|
||||
mat_qr_data.GetData() + (i_qr_start * m), &m,
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &trans, &m, &n_update,
|
||||
&i_qr_start, mat_qr_data.GetData(), &m,
|
||||
tau.GetData(),
|
||||
mat_qr_data.GetData() + (i_qr_start * m),
|
||||
&m, work.data(), &lwork, &info);
|
||||
MFEM_VERIFY(info == 0, ""); // Q^T A update work calculation failed
|
||||
lwork = static_cast<int>(work[0]);
|
||||
work.resize(lwork);
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sormqr_(&lside, &trans, &m, &n_update, &i_qr_start,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dormqr_(&lside, &trans, &m, &n_update, &i_qr_start,
|
||||
#endif
|
||||
mat_qr_data.GetData(), &m, tau.GetData(),
|
||||
mat_qr_data.GetData() + (i_qr_start * m), &m,
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &trans, &m, &n_update,
|
||||
&i_qr_start, mat_qr_data.GetData(), &m,
|
||||
tau.GetData(),
|
||||
mat_qr_data.GetData() + (i_qr_start * m),
|
||||
&m, work.data(), &lwork, &info);
|
||||
MFEM_VERIFY(info == 0, ""); // Q^T A update failed
|
||||
// Compute QR factorization of the submatrix
|
||||
lwork = -1;
|
||||
@@ -3977,24 +3940,16 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
|
||||
sub_tau[j] = tau[i_qr_start + j];
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgeqrf_(&m_update, &n_update,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgeqrf_(&m_update, &n_update,
|
||||
#endif
|
||||
submat_data.GetData(), &m_update, sub_tau.GetData(),
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(geqrf_)(&m_update, &n_update, submat_data.GetData(),
|
||||
&m_update, sub_tau.GetData(), work.data(),
|
||||
&lwork, &info);
|
||||
MFEM_VERIFY(info == 0, ""); // QR update factorization work calc
|
||||
lwork = static_cast<int>(work[0]);
|
||||
if (lwork == 0) { lwork = 1; }
|
||||
work.resize(lwork);
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgeqrf_(&m_update, &n_update,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgeqrf_(&m_update, &n_update,
|
||||
#endif
|
||||
submat_data.GetData(), &m_update, sub_tau.GetData(),
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(geqrf_)(&m_update, &n_update, submat_data.GetData(),
|
||||
&m_update, sub_tau.GetData(), work.data(),
|
||||
&lwork, &info);
|
||||
MFEM_VERIFY(info == 0, ""); // QR update factorization failed
|
||||
|
||||
// Copy result back
|
||||
@@ -4023,23 +3978,13 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
|
||||
// perform qr)
|
||||
lwork = -1;
|
||||
work.resize(10);
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgeqrf_(&m, &n_glob,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgeqrf_(&m, &n_glob,
|
||||
#endif
|
||||
mat_qr_data.GetData(), &m, tau.GetData(),
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(geqrf_)(&m, &n_glob, mat_qr_data.GetData(), &m,
|
||||
tau.GetData(), work.data(), &lwork, &info);
|
||||
MFEM_VERIFY(info == 0, ""); // QR factorization work calculation
|
||||
lwork = static_cast<int>(work[0]);
|
||||
work.resize(lwork);
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgeqrf_(&m, &n_glob,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgeqrf_(&m, &n_glob,
|
||||
#endif
|
||||
mat_qr_data.GetData(), &m, tau.GetData(),
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(geqrf_)(&m, &n_glob, mat_qr_data.GetData(), &m,
|
||||
tau.GetData(), work.data(), &lwork, &info);
|
||||
MFEM_VERIFY(info == 0, ""); // QR factorization failed
|
||||
}
|
||||
|
||||
@@ -4067,25 +4012,17 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
|
||||
|
||||
sub_tau[0] = tau[i_qr_start];
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sormqr_(&lside, &trans, &m_update, &ione, &ione,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dormqr_(&lside, &trans, &m_update, &ione, &ione,
|
||||
#endif
|
||||
submat_data.GetData(), &m_update, sub_tau.GetData(),
|
||||
sub_qt.GetData(), &m_update,
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &trans, &m_update, &ione, &ione,
|
||||
submat_data.GetData(), &m_update,
|
||||
sub_tau.GetData(), sub_qt.GetData(),
|
||||
&m_update, work.data(), &lwork, &info);
|
||||
MFEM_VERIFY(info == 0, ""); // H_last y work calculation failed
|
||||
lwork = static_cast<int>(work[0]);
|
||||
work.resize(lwork);
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sormqr_(&lside, &trans, &m_update, &ione, &ione,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dormqr_(&lside, &trans, &m_update, &ione, &ione,
|
||||
#endif
|
||||
submat_data.GetData(), &m_update, sub_tau.GetData(),
|
||||
sub_qt.GetData(), &m_update,
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &trans, &m_update, &ione, &ione,
|
||||
submat_data.GetData(), &m_update,
|
||||
sub_tau.GetData(), sub_qt.GetData(),
|
||||
&m_update, work.data(), &lwork, &info);
|
||||
MFEM_VERIFY(info == 0, ""); // H_last y failed
|
||||
// Copy result back
|
||||
for (int i=0; i<m_update; ++i)
|
||||
@@ -4099,25 +4036,17 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
|
||||
qt_rhs_glob = rhs_avg_glob;
|
||||
lwork = -1;
|
||||
work.resize(10);
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sormqr_(&lside, &trans, &m, &ione, &n_glob,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dormqr_(&lside, &trans, &m, &ione, &n_glob,
|
||||
#endif
|
||||
mat_qr_data.GetData(), &m, tau.GetData(),
|
||||
qt_rhs_glob.GetData(), &m,
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &trans, &m, &ione, &n_glob,
|
||||
mat_qr_data.GetData(), &m, tau.GetData(),
|
||||
qt_rhs_glob.GetData(), &m,
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_VERIFY(info == 0, ""); // Q^T b work calculation failed
|
||||
lwork = static_cast<int>(work[0]);
|
||||
work.resize(lwork);
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sormqr_(&lside, &trans, &m, &ione, &n_glob,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dormqr_(&lside, &trans, &m, &ione, &n_glob,
|
||||
#endif
|
||||
mat_qr_data.GetData(), &m, tau.GetData(),
|
||||
qt_rhs_glob.GetData(), &m,
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &trans, &m, &ione, &n_glob,
|
||||
mat_qr_data.GetData(), &m, tau.GetData(),
|
||||
qt_rhs_glob.GetData(), &m,
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_VERIFY(info == 0, ""); // Q^T b failed
|
||||
}
|
||||
|
||||
@@ -4130,14 +4059,10 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
|
||||
char upper = 'U';
|
||||
char nounit = 'N';
|
||||
vec1 = qt_rhs_glob;
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
strsm_(&lside, &upper, ¬rans, &nounit,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dtrsm_(&lside, &upper, ¬rans, &nounit,
|
||||
#endif
|
||||
&n_glob, &ione, &fone,
|
||||
mat_qr_data.GetData(), &m,
|
||||
vec1.GetData(), &n_glob);
|
||||
MFEM_LAPACK_PREFIX(trsm_)(&lside, &upper, ¬rans, &nounit,
|
||||
&n_glob, &ione, &fone,
|
||||
mat_qr_data.GetData(), &m,
|
||||
vec1.GetData(), &n_glob);
|
||||
|
||||
if (verbosity_ > 2)
|
||||
{
|
||||
@@ -4360,14 +4285,10 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
|
||||
{
|
||||
res_glob = rhs_avg_glob;
|
||||
real_t fmone = -1.0;
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sgemv_(¬rans, &m, &n_glob, &fmone,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dgemv_(¬rans, &m, &n_glob, &fmone,
|
||||
#endif
|
||||
mat_0_data.GetData(), &m,
|
||||
soln_nz_glob.GetData(), &ione, &fone,
|
||||
res_glob.GetData(), &ione);
|
||||
MFEM_LAPACK_PREFIX(gemv_)(¬rans, &m, &n_glob, &fmone,
|
||||
mat_0_data.GetData(), &m,
|
||||
soln_nz_glob.GetData(), &ione, &fone,
|
||||
res_glob.GetData(), &ione);
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -4381,24 +4302,18 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
|
||||
qqt_rhs_glob(i) = qt_rhs_glob(i);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sormqr_(&lside, ¬rans, &m, &ione, &n_glob, mat_qr_data.GetData(), &m,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dormqr_(&lside, ¬rans, &m, &ione, &n_glob, mat_qr_data.GetData(), &m,
|
||||
#endif
|
||||
tau.GetData(), qqt_rhs_glob.GetData(), &m,
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(ormqr_)(&lside, ¬rans, &m, &ione, &n_glob,
|
||||
mat_qr_data.GetData(), &m,
|
||||
tau.GetData(), qqt_rhs_glob.GetData(), &m,
|
||||
work.data(), &lwork, &info);
|
||||
|
||||
MFEM_VERIFY(info == 0, ""); // Q Q^T b work calculation failed.
|
||||
lwork = static_cast<int>(work[0]);
|
||||
work.resize(lwork);
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
sormqr_(&lside, ¬rans, &m, &ione, &n_glob, mat_qr_data.GetData(), &m,
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
dormqr_(&lside, ¬rans, &m, &ione, &n_glob, mat_qr_data.GetData(), &m,
|
||||
#endif
|
||||
tau.GetData(), qqt_rhs_glob.GetData(), &m,
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_LAPACK_PREFIX(ormqr_)(&lside, ¬rans, &m, &ione, &n_glob,
|
||||
mat_qr_data.GetData(), &m,
|
||||
tau.GetData(), qqt_rhs_glob.GetData(), &m,
|
||||
work.data(), &lwork, &info);
|
||||
MFEM_VERIFY(info == 0, ""); // Q Q^T b calculation failed.
|
||||
res_glob = rhs_avg_glob;
|
||||
res_glob -= qqt_rhs_glob;
|
||||
|
||||
+19
-11
@@ -1267,24 +1267,32 @@ real_t SparseMatrix::InnerProduct(const Vector &x, const Vector &y) const
|
||||
|
||||
void SparseMatrix::GetRowSums(Vector &x) const
|
||||
{
|
||||
for (int i = 0; i < height; i++)
|
||||
if (Finalized())
|
||||
{
|
||||
real_t a = 0.0;
|
||||
if (A)
|
||||
auto d_I = ReadI();
|
||||
auto d_A = ReadData();
|
||||
auto d_x = x.Write();
|
||||
mfem::forall(height, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
for (int j = I[i], end = I[i+1]; j < end; j++)
|
||||
real_t sum = 0.0;
|
||||
for (int j = d_I[i], end = d_I[i+1]; j < end; j++)
|
||||
{
|
||||
a += A[j];
|
||||
sum += d_A[j];
|
||||
}
|
||||
}
|
||||
else
|
||||
d_x[i] = sum;
|
||||
});
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int i = 0; i < height; i++)
|
||||
{
|
||||
real_t a = 0.0;
|
||||
for (RowNode *np = Rows[i]; np != NULL; np = np->Prev)
|
||||
{
|
||||
a += np->Value;
|
||||
}
|
||||
x(i) = a;
|
||||
}
|
||||
x(i) = a;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -3300,7 +3308,7 @@ void SparseMatrix::Print(std::ostream & os, int width_) const
|
||||
{
|
||||
int i, j;
|
||||
|
||||
if (A == NULL)
|
||||
if (A.Empty())
|
||||
{
|
||||
RowNode *nd;
|
||||
for (i = 0; i < height; i++)
|
||||
@@ -3354,7 +3362,7 @@ void SparseMatrix::PrintMatlab(std::ostream & os) const
|
||||
os.setf(ios::scientific);
|
||||
std::streamsize old_prec = os.precision(14);
|
||||
|
||||
if (A == NULL)
|
||||
if (A.Empty())
|
||||
{
|
||||
RowNode *nd;
|
||||
for (i = 0; i < height; i++)
|
||||
@@ -3397,7 +3405,7 @@ void SparseMatrix::PrintMM(std::ostream & os) const
|
||||
|
||||
os << height << " " << width << " " << NumNonZeroElems() << '\n';
|
||||
|
||||
if (A == NULL)
|
||||
if (A.Empty())
|
||||
{
|
||||
RowNode *nd;
|
||||
for (i = 0; i < height; i++)
|
||||
|
||||
@@ -216,7 +216,7 @@ public:
|
||||
void ClearCuSparse() { ClearGPUSparse(); }
|
||||
|
||||
/// Check if the SparseMatrix is empty.
|
||||
bool Empty() const { return (A == NULL) && (Rows == NULL); }
|
||||
bool Empty() const { return A.Empty() && (Rows == NULL); }
|
||||
|
||||
/// Return the array #I.
|
||||
inline int *GetI() { return I; }
|
||||
|
||||
+37
-10
@@ -1341,38 +1341,59 @@ CVODESSolver::~CVODESSolver()
|
||||
// ARKStep interface
|
||||
// ---------------------------------------------------------------------------
|
||||
|
||||
int ARKStepSolver::RHS1(realtype t, const N_Vector y, N_Vector ydot,
|
||||
int ARKStepSolver::RHS1(realtype t, const N_Vector y, N_Vector result,
|
||||
void *user_data)
|
||||
{
|
||||
// Get data from N_Vectors
|
||||
const SundialsNVector mfem_y(y);
|
||||
SundialsNVector mfem_ydot(ydot);
|
||||
SundialsNVector mfem_result(result);
|
||||
ARKStepSolver *self = static_cast<ARKStepSolver*>(user_data);
|
||||
|
||||
// Compute f(t, y) in y' = f(t, y) or fe(t, y) in y' = fe(t, y) + fi(t, y)
|
||||
// Compute either f(t, y) in one of
|
||||
// 1. y' = f(t, y)
|
||||
// 2. M y' = f(t, y)
|
||||
// or fe(t, y) in one of
|
||||
// 1. y' = fe(t, y) + fi(t, y)
|
||||
// 2. M y' = fe(t, y) + fi(t, y)
|
||||
self->f->SetTime(t);
|
||||
if (self->rk_type == IMEX)
|
||||
{
|
||||
self->f->SetEvalMode(TimeDependentOperator::ADDITIVE_TERM_1);
|
||||
}
|
||||
self->f->Mult(mfem_y, mfem_ydot);
|
||||
if (self->f->isExplicit()) // ODE is in form 1
|
||||
{
|
||||
self->f->Mult(mfem_y, mfem_result);
|
||||
}
|
||||
else // ODE is in form 2
|
||||
{
|
||||
self->f->ExplicitMult(mfem_y, mfem_result);
|
||||
}
|
||||
|
||||
// Return success
|
||||
return (0);
|
||||
}
|
||||
|
||||
int ARKStepSolver::RHS2(realtype t, const N_Vector y, N_Vector ydot,
|
||||
int ARKStepSolver::RHS2(realtype t, const N_Vector y, N_Vector result,
|
||||
void *user_data)
|
||||
{
|
||||
// Get data from N_Vectors
|
||||
const SundialsNVector mfem_y(y);
|
||||
SundialsNVector mfem_ydot(ydot);
|
||||
SundialsNVector mfem_result(result);
|
||||
ARKStepSolver *self = static_cast<ARKStepSolver*>(user_data);
|
||||
|
||||
// Compute fi(t, y) in y' = fe(t, y) + fi(t, y)
|
||||
// Compute fi(t, y) in one of
|
||||
// 1. y' = fe(t, y) + fi(t, y) (ODE is expressed in EXPLICIT form)
|
||||
// 2. M y' = fe(t, y) + fi(y, t) (ODE is expressed in IMPLICIT form)
|
||||
self->f->SetTime(t);
|
||||
self->f->SetEvalMode(TimeDependentOperator::ADDITIVE_TERM_2);
|
||||
self->f->Mult(mfem_y, mfem_ydot);
|
||||
if (self->f->isExplicit())
|
||||
{
|
||||
self->f->Mult(mfem_y, mfem_result);
|
||||
}
|
||||
else
|
||||
{
|
||||
self->f->ExplicitMult(mfem_y, mfem_result);
|
||||
}
|
||||
|
||||
// Return success
|
||||
return (0);
|
||||
@@ -1567,7 +1588,7 @@ void ARKStepSolver::Init(TimeDependentOperator &f_)
|
||||
reinit = true;
|
||||
}
|
||||
|
||||
void ARKStepSolver::Step(Vector &x, double &t, double &dt)
|
||||
void ARKStepSolver::Step(Vector &x, real_t &t, real_t &dt)
|
||||
{
|
||||
Y->MakeRef(x, 0, x.Size());
|
||||
MFEM_VERIFY(Y->Size() == x.Size(), "size mismatch");
|
||||
@@ -1666,7 +1687,7 @@ void ARKStepSolver::UseMFEMMassLinearSolver(int tdep)
|
||||
LSM->content = this;
|
||||
LSM->ops->gettype = LSGetType;
|
||||
LSM->ops->solve = ARKStepSolver::MassSysSolve;
|
||||
LSA->ops->free = LSFree;
|
||||
LSM->ops->free = LSFree;
|
||||
|
||||
M = SUNMatNewEmpty(Sundials::GetContext());
|
||||
MFEM_VERIFY(M, "error in SUNMatNewEmpty()");
|
||||
@@ -1683,6 +1704,9 @@ void ARKStepSolver::UseMFEMMassLinearSolver(int tdep)
|
||||
// Set the linear system function
|
||||
flag = ARKStepSetMassFn(sundials_mem, ARKStepSolver::MassSysSetup);
|
||||
MFEM_VERIFY(flag == ARK_SUCCESS, "error in ARKStepSetMassFn()");
|
||||
|
||||
// Check that the ODE is not expressed in EXPLICIT form
|
||||
MFEM_VERIFY(!f->isExplicit(), "ODE operator is expressed in EXPLICIT form")
|
||||
}
|
||||
|
||||
void ARKStepSolver::UseSundialsMassLinearSolver(int tdep)
|
||||
@@ -1703,6 +1727,9 @@ void ARKStepSolver::UseSundialsMassLinearSolver(int tdep)
|
||||
flag = ARKStepSetMassTimes(sundials_mem, NULL, ARKStepSolver::MassMult2,
|
||||
this);
|
||||
MFEM_VERIFY(flag == ARK_SUCCESS, "error in ARKStepSetMassTimes()");
|
||||
|
||||
// Check that the ODE is not expressed in EXPLICIT form
|
||||
MFEM_VERIFY(!f->isExplicit(), "ODE operator is expressed in EXPLICIT form")
|
||||
}
|
||||
|
||||
void ARKStepSolver::SetStepMode(int itask)
|
||||
|
||||
+1
-1
@@ -763,7 +763,7 @@ public:
|
||||
@note On input, the values of @a t and @a dt are used to compute desired
|
||||
output time for the integration, tout = @a t + @a dt.
|
||||
*/
|
||||
virtual void Step(Vector &x, double &t, double &dt);
|
||||
virtual void Step(Vector &x, real_t &t, real_t &dt) override;
|
||||
|
||||
/** @brief Attach the linear system setup and solve methods from the
|
||||
TimeDependentOperator i.e., SUNImplicitSetup() and SUNImplicitSolve() to
|
||||
|
||||
@@ -12,6 +12,7 @@
|
||||
set(SRCS
|
||||
attribute_sets.cpp
|
||||
element.cpp
|
||||
exodus_writer.cpp
|
||||
face_nbr_geom.cpp
|
||||
gmsh.cpp
|
||||
hexahedron.cpp
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
+43
-11
@@ -466,7 +466,8 @@ void Mesh::GetBdrElementTransformation(int i,
|
||||
{
|
||||
for (int j = 0; j < n; j++)
|
||||
{
|
||||
pm(k,j) = nodes(vdofs[n*k+j]);
|
||||
int idx = vdofs[n*k+j];
|
||||
pm(k,j) = nodes((idx<0)? -1-idx:idx);
|
||||
}
|
||||
}
|
||||
ElTr->SetFE(bdr_el);
|
||||
@@ -7131,17 +7132,15 @@ Table *Mesh::GetEdgeVertexTable() const
|
||||
|
||||
Table *Mesh::GetVertexToElementTable()
|
||||
{
|
||||
int i, j, nv, *v;
|
||||
|
||||
Table *vert_elem = new Table;
|
||||
|
||||
vert_elem->MakeI(NumOfVertices);
|
||||
|
||||
for (i = 0; i < NumOfElements; i++)
|
||||
for (int i = 0; i < NumOfElements; i++)
|
||||
{
|
||||
nv = elements[i]->GetNVertices();
|
||||
v = elements[i]->GetVertices();
|
||||
for (j = 0; j < nv; j++)
|
||||
const int nv = elements[i]->GetNVertices();
|
||||
const int *v = elements[i]->GetVertices();
|
||||
for (int j = 0; j < nv; j++)
|
||||
{
|
||||
vert_elem->AddAColumnInRow(v[j]);
|
||||
}
|
||||
@@ -7149,11 +7148,11 @@ Table *Mesh::GetVertexToElementTable()
|
||||
|
||||
vert_elem->MakeJ();
|
||||
|
||||
for (i = 0; i < NumOfElements; i++)
|
||||
for (int i = 0; i < NumOfElements; i++)
|
||||
{
|
||||
nv = elements[i]->GetNVertices();
|
||||
v = elements[i]->GetVertices();
|
||||
for (j = 0; j < nv; j++)
|
||||
const int nv = elements[i]->GetNVertices();
|
||||
const int *v = elements[i]->GetVertices();
|
||||
for (int j = 0; j < nv; j++)
|
||||
{
|
||||
vert_elem->AddConnection(v[j], i);
|
||||
}
|
||||
@@ -7164,6 +7163,39 @@ Table *Mesh::GetVertexToElementTable()
|
||||
return vert_elem;
|
||||
}
|
||||
|
||||
Table *Mesh::GetVertexToBdrElementTable()
|
||||
{
|
||||
Table *vert_bdr_elem = new Table;
|
||||
|
||||
vert_bdr_elem->MakeI(NumOfVertices);
|
||||
|
||||
for (int i = 0; i < NumOfBdrElements; i++)
|
||||
{
|
||||
const int nv = boundary[i]->GetNVertices();
|
||||
const int *v = boundary[i]->GetVertices();
|
||||
for (int j = 0; j < nv; j++)
|
||||
{
|
||||
vert_bdr_elem->AddAColumnInRow(v[j]);
|
||||
}
|
||||
}
|
||||
|
||||
vert_bdr_elem->MakeJ();
|
||||
|
||||
for (int i = 0; i < NumOfBdrElements; i++)
|
||||
{
|
||||
const int nv = boundary[i]->GetNVertices();
|
||||
const int *v = boundary[i]->GetVertices();
|
||||
for (int j = 0; j < nv; j++)
|
||||
{
|
||||
vert_bdr_elem->AddConnection(v[j], i);
|
||||
}
|
||||
}
|
||||
|
||||
vert_bdr_elem->ShiftUpI();
|
||||
|
||||
return vert_bdr_elem;
|
||||
}
|
||||
|
||||
Table *Mesh::GetFaceToElementTable() const
|
||||
{
|
||||
Table *face_elem = new Table;
|
||||
|
||||
@@ -1537,6 +1537,9 @@ public:
|
||||
/// @note The returned Table should be deleted by the caller
|
||||
Table *GetVertexToElementTable();
|
||||
|
||||
/// @note The returned Table should be deleted by the caller
|
||||
Table *GetVertexToBdrElementTable();
|
||||
|
||||
/// Return the "face"-element Table. Here "face" refers to face (3D),
|
||||
/// edge (2D), or vertex (1D).
|
||||
///
|
||||
@@ -2331,6 +2334,11 @@ public:
|
||||
bool high_order_output=false,
|
||||
int compression_level=0);
|
||||
|
||||
#ifdef MFEM_USE_NETCDF
|
||||
/// @brief Export a mesh to an Exodus II file.
|
||||
void PrintExodusII(const std::string fpath);
|
||||
#endif
|
||||
|
||||
/** @brief Prints the mesh with boundary elements given by the boundary of
|
||||
the subdomains, so that the boundary of subdomain i has boundary
|
||||
attribute i+1. */
|
||||
|
||||
+103
-18
@@ -1857,7 +1857,7 @@ NURBSPatch *Revolve3D(NURBSPatch &patch, real_t n[], real_t ang, int times)
|
||||
{
|
||||
if (patch.Dim != 4)
|
||||
{
|
||||
mfem_error("Revolve3D(NURBSPatch &, double [], double)");
|
||||
mfem_error("Revolve3D(NURBSPatch &, real_t [], real_t)");
|
||||
}
|
||||
|
||||
int size = 1, ns;
|
||||
@@ -2008,23 +2008,23 @@ NURBSExtension::NURBSExtension(std::istream &input, bool spacing)
|
||||
input >> numSpacing;
|
||||
for (int j = 0; j < numSpacing; j++)
|
||||
{
|
||||
int ki, spacingType, numIntParam, numDoubleParam;
|
||||
input >> ki >> spacingType >> numIntParam >> numDoubleParam;
|
||||
int ki, spacingType, numIntParam, numRealParam;
|
||||
input >> ki >> spacingType >> numIntParam >> numRealParam;
|
||||
|
||||
MFEM_VERIFY(0 <= ki && ki < NumOfKnotVectors,
|
||||
"Invalid knotvector index");
|
||||
MFEM_VERIFY(numIntParam >= 0 && numDoubleParam >= 0,
|
||||
MFEM_VERIFY(numIntParam >= 0 && numRealParam >= 0,
|
||||
"Invalid number of parameters in KnotVector");
|
||||
|
||||
Array<int> ipar(numIntParam);
|
||||
Vector dpar(numDoubleParam);
|
||||
Vector dpar(numRealParam);
|
||||
|
||||
for (int i=0; i<numIntParam; ++i)
|
||||
{
|
||||
input >> ipar[i];
|
||||
}
|
||||
|
||||
for (int i=0; i<numDoubleParam; ++i)
|
||||
for (int i=0; i<numRealParam; ++i)
|
||||
{
|
||||
input >> dpar[i];
|
||||
}
|
||||
@@ -2064,7 +2064,7 @@ NURBSExtension::NURBSExtension(std::istream &input, bool spacing)
|
||||
new KnotVector(*patches[p]->GetKV(0));
|
||||
}
|
||||
}
|
||||
if (Dimension() == 2)
|
||||
else if (Dimension() == 2)
|
||||
{
|
||||
patchTopo->GetElementEdges(p, edges, oedge);
|
||||
if (knotVectors[KnotInd(edges[0])] == NULL)
|
||||
@@ -2230,7 +2230,8 @@ NURBSExtension::NURBSExtension(NURBSExtension *parent, int newOrder)
|
||||
}
|
||||
|
||||
NURBSExtension::NURBSExtension(NURBSExtension *parent,
|
||||
const Array<int> &newOrders)
|
||||
const Array<int> &newOrders, Mode mode)
|
||||
: mode(mode)
|
||||
{
|
||||
newOrders.Copy(mOrders);
|
||||
SetOrderFromOrders();
|
||||
@@ -3891,7 +3892,16 @@ void NURBSExtension::GenerateBdrElementDofTable()
|
||||
int ndof = bel_dof->Size_of_connections();
|
||||
for (int i = 0; i < ndof; i++)
|
||||
{
|
||||
dof[i] = activeDof[dof[i]] - 1;
|
||||
int idx = dof[i];
|
||||
if (idx < 0)
|
||||
{
|
||||
dof[i] = -1 - (activeDof[-1-idx] - 1);
|
||||
dof[i] = -activeDof[-1-idx];
|
||||
}
|
||||
else
|
||||
{
|
||||
dof[i] = activeDof[idx] - 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -3943,6 +3953,22 @@ void NURBSExtension::Generate2DBdrElementDofTable()
|
||||
// Load dofs
|
||||
const int nks0 = kv[0]->GetNKS();
|
||||
const int ord0 = kv[0]->GetOrder();
|
||||
|
||||
bool add_dofs = true;
|
||||
int s = 1;
|
||||
|
||||
if (mode == Mode::H_DIV)
|
||||
{
|
||||
int fn = patchTopo->GetBdrElementFaceIndex(b);
|
||||
if (ord0 == mOrders.Max()) { add_dofs = false; }
|
||||
if (fn == 0) { s = -1; }
|
||||
if (fn == 2) { s = -1; }
|
||||
}
|
||||
else if (mode == Mode::H_CURL)
|
||||
{
|
||||
if (ord0 == mOrders.Max()) { add_dofs = false; }
|
||||
}
|
||||
|
||||
for (int i = 0; i < nks0; i++)
|
||||
{
|
||||
if (kv[0]->isElement(i))
|
||||
@@ -3950,10 +3976,14 @@ void NURBSExtension::Generate2DBdrElementDofTable()
|
||||
if (activeBdrElem[gbe])
|
||||
{
|
||||
Connection conn(lbe,0);
|
||||
for (int ii = 0; ii <= ord0; ii++)
|
||||
if (add_dofs)
|
||||
{
|
||||
conn.to = DofMap(p2g[(okv[0] >= 0) ? (i+ii) : (nx-i-ii)]);
|
||||
bel_dof_list.Append(conn);
|
||||
for (int ii = 0; ii <= ord0; ii++)
|
||||
{
|
||||
conn.to = DofMap(p2g[(okv[0] >= 0) ? (i+ii) : (nx-i-ii)]);
|
||||
if (s == -1) { conn.to = -1 -conn.to; }
|
||||
bel_dof_list.Append(conn);
|
||||
}
|
||||
}
|
||||
bel_to_patch[lbe] = b;
|
||||
bel_to_IJK(lbe,0) = (okv[0] >= 0) ? i : (-1-i);
|
||||
@@ -3990,6 +4020,25 @@ void NURBSExtension::Generate3DBdrElementDofTable()
|
||||
const int ord0 = kv[0]->GetOrder();
|
||||
const int nks1 = kv[1]->GetNKS();
|
||||
const int ord1 = kv[1]->GetOrder();
|
||||
|
||||
// Check if dofs are actually defined on boundary
|
||||
bool add_dofs = true;
|
||||
int s = 1;
|
||||
|
||||
if (mode == Mode::H_DIV)
|
||||
{
|
||||
int fn = patchTopo->GetBdrElementFaceIndex(b);
|
||||
if (ord0 != ord1) { add_dofs = false; }
|
||||
if (fn == 4) { s = -1; }
|
||||
if (fn == 1) { s = -1; }
|
||||
if (fn == 0) { s = -1; }
|
||||
}
|
||||
else if (mode == Mode::H_CURL)
|
||||
{
|
||||
if (ord0 == ord1) { add_dofs = false; }
|
||||
}
|
||||
|
||||
|
||||
for (int j = 0; j < nks1; j++)
|
||||
{
|
||||
if (kv[1]->isElement(j))
|
||||
@@ -4001,14 +4050,18 @@ void NURBSExtension::Generate3DBdrElementDofTable()
|
||||
if (activeBdrElem[gbe])
|
||||
{
|
||||
Connection conn(lbe,0);
|
||||
for (int jj = 0; jj <= ord1; jj++)
|
||||
if (add_dofs)
|
||||
{
|
||||
const int jj_ = (okv[1] >= 0) ? (j+jj) : (ny-j-jj);
|
||||
for (int ii = 0; ii <= ord0; ii++)
|
||||
for (int jj = 0; jj <= ord1; jj++)
|
||||
{
|
||||
const int ii_ = (okv[0] >= 0) ? (i+ii) : (nx-i-ii);
|
||||
conn.to = DofMap(p2g(ii_, jj_));
|
||||
bel_dof_list.Append(conn);
|
||||
const int jj_ = (okv[1] >= 0) ? (j+jj) : (ny-j-jj);
|
||||
for (int ii = 0; ii <= ord0; ii++)
|
||||
{
|
||||
const int ii_ = (okv[0] >= 0) ? (i+ii) : (nx-i-ii);
|
||||
conn.to = DofMap(p2g(ii_, jj_));
|
||||
if (s == -1) { conn.to = -1 -conn.to; }
|
||||
bel_dof_list.Append(conn);
|
||||
}
|
||||
}
|
||||
}
|
||||
bel_to_patch[lbe] = b;
|
||||
@@ -4241,6 +4294,38 @@ void NURBSExtension::DegreeElevate(int rel_degree, int degree)
|
||||
}
|
||||
}
|
||||
|
||||
NURBSExtension* NURBSExtension::GetDivExtension(int component)
|
||||
{
|
||||
// Smarter routine
|
||||
if (GetNP() > 1)
|
||||
{
|
||||
mfem_error("NURBSExtension::GetDivExtension currently "
|
||||
"only works for single patch NURBS meshes ");
|
||||
}
|
||||
|
||||
Array<int> newOrders = GetOrders();
|
||||
newOrders[component] += 1;
|
||||
|
||||
return new NURBSExtension(this, newOrders, Mode::H_DIV);
|
||||
}
|
||||
|
||||
NURBSExtension* NURBSExtension::GetCurlExtension(int component)
|
||||
{
|
||||
// Smarter routine
|
||||
if (GetNP() > 1)
|
||||
{
|
||||
mfem_error("NURBSExtension::GetCurlExtension currently "
|
||||
"only works for single patch NURBS meshes ");
|
||||
}
|
||||
|
||||
Array<int> newOrders = GetOrders();
|
||||
for (int c = 0; c < newOrders.Size(); c++) { newOrders[c]++; }
|
||||
newOrders[component] -= 1;
|
||||
|
||||
return new NURBSExtension(this, newOrders, Mode::H_CURL);
|
||||
}
|
||||
|
||||
|
||||
void NURBSExtension::UniformRefinement(Array<int> const& rf)
|
||||
{
|
||||
for (int p = 0; p < patches.Size(); p++)
|
||||
|
||||
+24
-1
@@ -426,6 +426,16 @@ class NURBSExtension
|
||||
friend class NURBSPatchMap;
|
||||
|
||||
protected:
|
||||
|
||||
/// Flag for indicating what type of NURBS fespace this extension is used for.
|
||||
enum class Mode
|
||||
{
|
||||
H_1, ///> Extension for a standard scalar-valued space
|
||||
H_DIV, ///> Extension for a divergence conforming vector-valued space
|
||||
H_CURL, ///> Extension for a curl conforming vector-valued space
|
||||
};
|
||||
Mode mode = Mode::H_1;
|
||||
|
||||
/// Order of KnotVectors, see GetOrder() for description.
|
||||
int mOrder;
|
||||
|
||||
@@ -655,8 +665,10 @@ public:
|
||||
/** @a note If a KnotVector in @a parent already has order greater than or
|
||||
equal to the corresponding entry in @a newOrder, it will be used
|
||||
unmodified. */
|
||||
NURBSExtension(NURBSExtension *parent, const Array<int> &newOrders);
|
||||
NURBSExtension(NURBSExtension *parent, const Array<int> &newOrders,
|
||||
Mode mode = Mode::H_1);
|
||||
/// Construct a NURBSExtension by merging a partitioned NURBS mesh.
|
||||
|
||||
NURBSExtension(Mesh *mesh_array[], int num_pieces);
|
||||
|
||||
/// Copy assignment not supported.
|
||||
@@ -841,6 +853,16 @@ public:
|
||||
void KnotInsert(Array<KnotVector *> &kv);
|
||||
void KnotInsert(Array<Vector *> &kv);
|
||||
|
||||
/** Returns the NURBSExtension to be used for @a component of
|
||||
an H(div) conforming NURBS space. Caller gets ownership of
|
||||
the returned object, and is responsible for deletion.*/
|
||||
NURBSExtension* GetDivExtension(int component);
|
||||
|
||||
/** Returns the NURBSExtension to be used for @a component of
|
||||
an H(curl) conforming NURBS space. Caller gets ownership of
|
||||
the returned object, and is responsible for deletion.*/
|
||||
NURBSExtension* GetCurlExtension(int component);
|
||||
|
||||
void KnotRemove(Array<Vector *> &kv, real_t tol = 1.0e-12);
|
||||
|
||||
/** Calls GetCoarseningFactors for each patch and finds the minimum factor
|
||||
@@ -848,6 +870,7 @@ public:
|
||||
non-nested spacing functions. */
|
||||
void GetCoarseningFactors(Array<int> & f) const;
|
||||
|
||||
|
||||
/// Returns the index of the patch containing element @a elem.
|
||||
int GetElementPatch(int elem) const { return el_to_patch[elem]; }
|
||||
|
||||
|
||||
@@ -15,11 +15,11 @@
|
||||
//
|
||||
// Sample runs
|
||||
//
|
||||
// acoustics -ref 4 -o 1 -rnum 1.0
|
||||
// acoustics -m ../../data/inline-tri.mesh -ref 4 -o 2 -sc -rnum 3.0
|
||||
// acoustics -m ../../data/amr-quad.mesh -ref 3 -o 3 -sc -rnum 4.5 -prob 1
|
||||
// acoustics -m ../../data/inline-quad.mesh -ref 2 -o 4 -sc -rnum 11.5 -prob 1
|
||||
// acoustics -m ../../data/inline-hex.mesh -ref 1 -o 2 -sc -rnum 1.0
|
||||
// acoustics -ref 4 -o 1 -rnum 1.0
|
||||
// acoustics -m ../../data/inline-tri.mesh -ref 4 -o 2 -sc -rnum 3.0
|
||||
// acoustics -m ../../data/amr-quad.mesh -ref 3 -o 3 -sc -rnum 4.5 -prob 1
|
||||
// acoustics -m ../../data/inline-quad.mesh -ref 2 -o 4 -sc -rnum 11.5 -prob 1
|
||||
// acoustics -m ../../data/inline-hex.mesh -ref 1 -o 2 -sc -rnum 1.0
|
||||
|
||||
// Description:
|
||||
// This example code demonstrates the use of MFEM to define and solve
|
||||
|
||||
@@ -14,14 +14,14 @@
|
||||
// Compile with: make convection-diffusion
|
||||
//
|
||||
// sample runs
|
||||
// convection-diffusion -m ../../data/star.mesh -o 2 -ref 2 -theta 0.0 -eps 1e-1 -beta '2 3'
|
||||
// convection-diffusion -m ../../data/beam-hex.mesh -o 2 -ref 2 -theta 0.0 -eps 1e0 -beta '1 0 2'
|
||||
// convection-diffusion -m ../../data/inline-tri.mesh -o 3 -ref 2 -theta 0.0 -eps 1e-2 -beta '4 2' -sc
|
||||
// convection-diffusion -m ../../data/star.mesh -o 2 -ref 2 -theta 0.0 -eps 1e-1 -beta '2 3'
|
||||
// convection-diffusion -m ../../data/beam-hex.mesh -o 2 -ref 2 -theta 0.0 -eps 1e0 -beta '1 0 2'
|
||||
// convection-diffusion -m ../../data/inline-tri.mesh -o 3 -ref 2 -theta 0.0 -eps 1e-2 -beta '4 2' -sc
|
||||
|
||||
// AMR runs
|
||||
// convection-diffusion -o 3 -ref 5 -prob 1 -eps 1e-1 -theta 0.75
|
||||
// convection-diffusion -o 2 -ref 9 -prob 1 -eps 1e-2 -theta 0.75
|
||||
// convection-diffusion -o 3 -ref 9 -prob 1 -eps 1e-3 -theta 0.75 -sc
|
||||
// convection-diffusion -o 3 -ref 5 -prob 1 -eps 1e-1 -theta 0.75
|
||||
// convection-diffusion -o 2 -ref 9 -prob 1 -eps 1e-2 -theta 0.75
|
||||
// convection-diffusion -o 3 -ref 9 -prob 1 -eps 1e-3 -theta 0.75 -sc
|
||||
|
||||
// Description:
|
||||
// This example code demonstrates the use of MFEM to define and solve
|
||||
|
||||
@@ -14,10 +14,10 @@
|
||||
// Compile with: make maxwell
|
||||
//
|
||||
// Sample runs
|
||||
// maxwell -m ../../data/inline-tri.mesh -ref 4 -o 1 -rnum 1.0
|
||||
// maxwell -m ../../data/amr-quad.mesh -ref 3 -o 2 -rnum 1.6 -sc
|
||||
// maxwell -m ../../data/inline-quad.mesh -ref 2 -o 3 -rnum 4.2 -sc
|
||||
// maxwell -m ../../data/inline-hex.mesh -ref 1 -o 2 -sc -rnum 1.0
|
||||
// maxwell -m ../../data/inline-tri.mesh -ref 4 -o 1 -rnum 1.0
|
||||
// maxwell -m ../../data/amr-quad.mesh -ref 3 -o 2 -rnum 1.6 -sc
|
||||
// maxwell -m ../../data/inline-quad.mesh -ref 2 -o 3 -rnum 4.2 -sc
|
||||
// maxwell -m ../../data/inline-hex.mesh -ref 1 -o 2 -sc -rnum 1.0
|
||||
|
||||
// Description:
|
||||
// This example code demonstrates the use of MFEM to define and solve
|
||||
|
||||
+11
-11
@@ -15,19 +15,19 @@
|
||||
//
|
||||
// sample runs
|
||||
|
||||
// mpirun -np 4 pacoustics -o 3 -m ../../data/star.mesh -sref 1 -pref 2 -rnum 1.9 -sc -prob 0
|
||||
// mpirun -np 4 pacoustics -o 3 -m ../../data/inline-quad.mesh -sref 1 -pref 2 -rnum 5.2 -sc -prob 1
|
||||
// mpirun -np 4 pacoustics -o 4 -m ../../data/inline-tri.mesh -sref 1 -pref 2 -rnum 7.1 -sc -prob 1
|
||||
// mpirun -np 4 pacoustics -o 2 -m ../../data/inline-hex.mesh -sref 0 -pref 1 -rnum 1.9 -sc -prob 0
|
||||
// mpirun -np 4 pacoustics -o 3 -m ../../data/inline-quad.mesh -sref 2 -pref 1 -rnum 7.1 -sc -prob 2
|
||||
// mpirun -np 4 pacoustics -o 2 -m ../../data/inline-hex.mesh -sref 0 -pref 1 -rnum 4.1 -sc -prob 2
|
||||
// mpirun -np 4 pacoustics -o 3 -m meshes/scatter.mesh -sref 1 -pref 1 -rnum 7.1 -sc -prob 3
|
||||
// mpirun -np 4 pacoustics -o 4 -m meshes/scatter.mesh -sref 1 -pref 1 -rnum 10.1 -sc -prob 4
|
||||
// mpirun -np 4 pacoustics -o 4 -m meshes/scatter.mesh -sref 1 -pref 1 -rnum 12.1 -sc -prob 5
|
||||
// mpirun -np 4 pacoustics -o 3 -m ../../data/star.mesh -sref 1 -pref 2 -rnum 1.9 -sc -prob 0
|
||||
// mpirun -np 4 pacoustics -o 3 -m ../../data/inline-quad.mesh -sref 1 -pref 2 -rnum 5.2 -sc -prob 1
|
||||
// mpirun -np 4 pacoustics -o 4 -m ../../data/inline-tri.mesh -sref 1 -pref 2 -rnum 7.1 -sc -prob 1
|
||||
// mpirun -np 4 pacoustics -o 2 -m ../../data/inline-hex.mesh -sref 0 -pref 1 -rnum 1.9 -sc -prob 0
|
||||
// mpirun -np 4 pacoustics -o 3 -m ../../data/inline-quad.mesh -sref 2 -pref 1 -rnum 7.1 -sc -prob 2
|
||||
// mpirun -np 4 pacoustics -o 2 -m ../../data/inline-hex.mesh -sref 0 -pref 1 -rnum 4.1 -sc -prob 2
|
||||
// mpirun -np 4 pacoustics -o 3 -m meshes/scatter.mesh -sref 1 -pref 1 -rnum 7.1 -sc -prob 3
|
||||
// mpirun -np 4 pacoustics -o 4 -m meshes/scatter.mesh -sref 1 -pref 1 -rnum 10.1 -sc -prob 4
|
||||
// mpirun -np 4 pacoustics -o 4 -m meshes/scatter.mesh -sref 1 -pref 1 -rnum 12.1 -sc -prob 5
|
||||
|
||||
// AMR runs
|
||||
// mpirun -np 4 pacoustics -o 3 -m meshes/scatter.mesh -sref 0 -pref 7 -theta 0.75 -rnum 10.1 -sc -prob 3
|
||||
// mpirun -np 4 pacoustics -o 3 -m meshes/scatter.mesh -sref 0 -pref 12 -theta 0.75 -rnum 20.1 -sc -prob 3
|
||||
// mpirun -np 4 pacoustics -o 3 -m meshes/scatter.mesh -sref 0 -pref 7 -theta 0.75 -rnum 10.1 -sc -prob 3
|
||||
// mpirun -np 4 pacoustics -o 3 -m meshes/scatter.mesh -sref 0 -pref 12 -theta 0.75 -rnum 20.1 -sc -prob 3
|
||||
|
||||
// Description:
|
||||
// This example code demonstrates the use of MFEM to define and solve
|
||||
|
||||
@@ -11,17 +11,17 @@
|
||||
//
|
||||
// MFEM Ultraweak DPG parallel example for convection-diffusion
|
||||
//
|
||||
// Compile with: make pconvection-diffusion
|
||||
// Compile with: make pconvection-diffusion
|
||||
//
|
||||
// sample runs
|
||||
// mpirun -np 4 pconvection-diffusion -o 2 -ref 3 -prob 0 -eps 1e-1 -beta '4 2' -theta 0.0
|
||||
// mpirun -np 4 pconvection-diffusion -o 3 -ref 3 -prob 0 -eps 1e-2 -beta '2 3' -theta 0.0
|
||||
// mpirun -np 4 pconvection-diffusion -m ../../data/inline-hex.mesh -o 2 -ref 1 -prob 0 -sc -eps 1e-1 -theta 0.0
|
||||
// mpirun -np 4 pconvection-diffusion -o 2 -ref 3 -prob 0 -eps 1e-1 -beta '4 2' -theta 0.0
|
||||
// mpirun -np 4 pconvection-diffusion -o 3 -ref 3 -prob 0 -eps 1e-2 -beta '2 3' -theta 0.0
|
||||
// mpirun -np 4 pconvection-diffusion -m ../../data/inline-hex.mesh -o 2 -ref 1 -prob 0 -sc -eps 1e-1 -theta 0.0
|
||||
|
||||
// AMR runs
|
||||
// mpirun -np 4 pconvection-diffusion -o 3 -ref 10 -prob 1 -eps 1e-3 -beta '1 0' -theta 0.7 -sc
|
||||
// mpirun -np 4 pconvection-diffusion -o 3 -ref 15 -prob 2 -eps 5e-3 -theta 0.7 -sc
|
||||
// mpirun -np 4 pconvection-diffusion -o 2 -ref 12 -prob 3 -eps 1e-2 -beta '1 2' -theta 0.7 -sc
|
||||
// mpirun -np 4 pconvection-diffusion -o 3 -ref 10 -prob 1 -eps 1e-3 -beta '1 0' -theta 0.7 -sc
|
||||
// mpirun -np 4 pconvection-diffusion -o 3 -ref 15 -prob 2 -eps 5e-3 -theta 0.7 -sc
|
||||
// mpirun -np 4 pconvection-diffusion -o 2 -ref 12 -prob 3 -eps 1e-2 -beta '1 2' -theta 0.7 -sc
|
||||
|
||||
// Description:
|
||||
// This example code demonstrates the use of MFEM to define and solve a parallel
|
||||
|
||||
@@ -14,18 +14,18 @@
|
||||
// Compile with: make pdiffusion
|
||||
//
|
||||
// Sample runs
|
||||
// mpirun -np 4 pdiffusion -m ../../data/inline-quad.mesh -o 3 -sref 1 -pref 2 -theta 0.0 -prob 0
|
||||
// mpirun -np 4 pdiffusion -m ../../data/inline-hex.mesh -o 2 -sref 0 -pref 1 -theta 0.0 -prob 0 -sc
|
||||
// mpirun -np 4 pdiffusion -m ../../data/beam-tet.mesh -o 3 -sref 0 -pref 2 -theta 0.0 -prob 0 -sc
|
||||
// mpirun -np 4 pdiffusion -m ../../data/inline-quad.mesh -o 3 -sref 1 -pref 2 -theta 0.0 -prob 0
|
||||
// mpirun -np 4 pdiffusion -m ../../data/inline-hex.mesh -o 2 -sref 0 -pref 1 -theta 0.0 -prob 0 -sc
|
||||
// mpirun -np 4 pdiffusion -m ../../data/beam-tet.mesh -o 3 -sref 0 -pref 2 -theta 0.0 -prob 0 -sc
|
||||
|
||||
// L-shape runs
|
||||
// Note: uniform ref are expected to give sub-optimal rate for the L-shape problem (rate = 2/3)
|
||||
// mpirun -np 4 pdiffusion -o 2 -sref 1 -pref 5 -theta 0.0 -prob 1
|
||||
// mpirun -np 4 pdiffusion -o 2 -sref 1 -pref 5 -theta 0.0 -prob 1
|
||||
|
||||
// L-shape AMR runs
|
||||
// mpirun -np 4 pdiffusion -o 1 -sref 1 -pref 10 -theta 0.8 -prob 1
|
||||
// mpirun -np 4 pdiffusion -o 2 -sref 1 -pref 8 -theta 0.75 -prob 1 -sc
|
||||
// mpirun -np 4 pdiffusion -o 3 -sref 1 -pref 6 -theta 0.75 -prob 1 -sc -do 2
|
||||
// mpirun -np 4 pdiffusion -o 1 -sref 1 -pref 10 -theta 0.8 -prob 1
|
||||
// mpirun -np 4 pdiffusion -o 2 -sref 1 -pref 8 -theta 0.75 -prob 1 -sc
|
||||
// mpirun -np 4 pdiffusion -o 3 -sref 1 -pref 6 -theta 0.75 -prob 1 -sc -do 2
|
||||
|
||||
// Description:
|
||||
// This example code demonstrates the use of MFEM to define and solve
|
||||
|
||||
@@ -14,16 +14,16 @@
|
||||
// Compile with: make pmaxwell
|
||||
//
|
||||
// sample run
|
||||
// mpirun -np 4 pmaxwell -m ../../data/star.mesh -o 2 -sref 0 -pref 3 -rnum 0.5 -prob 0
|
||||
// mpirun -np 4 pmaxwell -m ../../data/inline-quad.mesh -o 3 -sref 0 -pref 3 -rnum 4.8 -sc -prob 0
|
||||
// mpirun -np 4 pmaxwell -m ../../data/inline-hex.mesh -o 2 -sref 0 -pref 1 -rnum 0.8 -sc -prob 0
|
||||
// mpirun -np 4 pmaxwell -m ../../data/inline-quad.mesh -o 3 -sref 1 -pref 3 -rnum 4.8 -sc -prob 2
|
||||
// mpirun -np 4 pmaxwell -o 3 -sref 1 -pref 2 -rnum 11.8 -sc -prob 3
|
||||
// mpirun -np 4 pmaxwell -o 3 -sref 1 -pref 2 -rnum 9.8 -sc -prob 4
|
||||
// mpirun -np 4 pmaxwell -m ../../data/star.mesh -o 2 -sref 0 -pref 3 -rnum 0.5 -prob 0
|
||||
// mpirun -np 4 pmaxwell -m ../../data/inline-quad.mesh -o 3 -sref 0 -pref 3 -rnum 4.8 -sc -prob 0
|
||||
// mpirun -np 4 pmaxwell -m ../../data/inline-hex.mesh -o 2 -sref 0 -pref 1 -rnum 0.8 -sc -prob 0
|
||||
// mpirun -np 4 pmaxwell -m ../../data/inline-quad.mesh -o 3 -sref 1 -pref 3 -rnum 4.8 -sc -prob 2
|
||||
// mpirun -np 4 pmaxwell -o 3 -sref 1 -pref 2 -rnum 11.8 -sc -prob 3
|
||||
// mpirun -np 4 pmaxwell -o 3 -sref 1 -pref 2 -rnum 9.8 -sc -prob 4
|
||||
|
||||
// AMR run. Note that this is a computationally intensive sample run.
|
||||
// We recommend trying it on a large machine with more mpi ranks
|
||||
// mpirun -np 4 pmaxwell -o 3 -sref 0 -pref 15 -prob 1 -theta 0.7 -sc
|
||||
// mpirun -np 4 pmaxwell -o 3 -sref 0 -pref 15 -prob 1 -theta 0.7 -sc
|
||||
|
||||
// Description:
|
||||
// This example code demonstrates the use of MFEM to define and solve
|
||||
|
||||
@@ -10,7 +10,6 @@
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "change_basis.hpp"
|
||||
#include "../../fem/qinterp/dispatch.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../../linalg/dtensor.hpp"
|
||||
|
||||
@@ -105,17 +104,25 @@ ChangeOfBasis_L2::ChangeOfBasis_L2(FiniteElementSpace &fes)
|
||||
void ChangeOfBasis_L2::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (no_op) { y = x; return; }
|
||||
using namespace internal::quadrature_interpolator;
|
||||
dof2quad.B.MakeRef(B_1d);
|
||||
TensorValues<QVectorLayout::byVDIM>(ne, 1, dof2quad, x, y);
|
||||
const int dim = dof2quad.FE->GetDim();
|
||||
const int nd = dof2quad.ndof;
|
||||
const int nq = dof2quad.nqpt;
|
||||
QuadratureInterpolator::TensorEvalKernels::Run(
|
||||
dim, QVectorLayout::byVDIM, 1, nd, nq, ne, dof2quad.B.Read(), x.Read(),
|
||||
y.Write(), 1, nd, nq);
|
||||
}
|
||||
|
||||
void ChangeOfBasis_L2::MultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (no_op) { y = x; return; }
|
||||
using namespace internal::quadrature_interpolator;
|
||||
dof2quad.B.MakeRef(Bt_1d);
|
||||
TensorValues<QVectorLayout::byVDIM>(ne, 1, dof2quad, x, y);
|
||||
const int dim = dof2quad.FE->GetDim();
|
||||
const int nd = dof2quad.ndof;
|
||||
const int nq = dof2quad.nqpt;
|
||||
QuadratureInterpolator::TensorEvalKernels::Run(
|
||||
dim, QVectorLayout::byVDIM, 1, nd, nq, ne, dof2quad.B.Read(), x.Read(),
|
||||
y.Write(), 1, nd, nq);
|
||||
}
|
||||
|
||||
ChangeOfBasis_RT::ChangeOfBasis_RT(FiniteElementSpace &fes)
|
||||
|
||||
@@ -386,6 +386,9 @@ int main (int argc, char *argv[])
|
||||
"S) Save in MFEM serial format\n"
|
||||
"T) Save in MFEM parallel format using the current partitioning\n"
|
||||
"V) Save in VTK format (only linear and quadratic meshes)\n"
|
||||
#ifdef MFEM_USE_NETCDF
|
||||
"X) Save in Exodus II format (only linear and quadratic meshes)\n"
|
||||
#endif
|
||||
"D) Save as a DataCollection\n"
|
||||
"q) Quit\n"
|
||||
#ifdef MFEM_USE_ZLIB
|
||||
@@ -1288,6 +1291,15 @@ int main (int argc, char *argv[])
|
||||
cout << "New VTK mesh file: " << omesh_file << endl;
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_NETCDF
|
||||
if (mk == 'X')
|
||||
{
|
||||
const char omesh_file[] = "mesh-explorer.e";
|
||||
mesh->PrintExodusII(omesh_file);
|
||||
cout << "New Exodus II mesh file: " << omesh_file << endl;
|
||||
}
|
||||
#endif
|
||||
|
||||
if (mk == 'D')
|
||||
{
|
||||
cout << "What type of DataCollection?\n"
|
||||
|
||||
@@ -13,6 +13,18 @@ add_mfem_miniapp(nurbs_ex1
|
||||
MAIN nurbs_ex1.cpp
|
||||
LIBRARIES mfem)
|
||||
|
||||
add_mfem_miniapp(nurbs_ex3
|
||||
MAIN nurbs_ex3.cpp
|
||||
LIBRARIES mfem)
|
||||
|
||||
add_mfem_miniapp(nurbs_ex5
|
||||
MAIN nurbs_ex5.cpp
|
||||
LIBRARIES mfem)
|
||||
|
||||
add_mfem_miniapp(nurbs_ex24
|
||||
MAIN nurbs_ex24.cpp
|
||||
LIBRARIES mfem)
|
||||
|
||||
add_mfem_miniapp(nurbs_curveint
|
||||
MAIN nurbs_curveint.cpp
|
||||
LIBRARIES mfem)
|
||||
@@ -29,6 +41,10 @@ add_mfem_miniapp(nurbs_patch_ex1
|
||||
MAIN nurbs_patch_ex1.cpp
|
||||
LIBRARIES mfem)
|
||||
|
||||
add_mfem_miniapp(nurbs_solenoidal
|
||||
MAIN nurbs_solenoidal.cpp
|
||||
LIBRARIES mfem)
|
||||
|
||||
if (MFEM_ENABLE_TESTING)
|
||||
add_test(NAME nurbs_ex1_1d_r1_o2_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
|
||||
@@ -64,6 +80,10 @@ if (MFEM_ENABLE_TESTING)
|
||||
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/pipe-nurbs-2d.mesh -o 2 --weak-bc -r 2)
|
||||
|
||||
add_test(NAME nurbs_ex1_neu_r2_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/pipe-nurbs-2d.mesh -o 2 -r 2 --neu "3")
|
||||
|
||||
add_test(NAME nurbs_ex1_weak_mp_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/ball-nurbs.mesh -o 2 --weak-bc -r 0)
|
||||
@@ -125,9 +145,60 @@ if (MFEM_ENABLE_TESTING)
|
||||
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/miniapps/nurbs/meshes/two-cubes-nurbs-autoedge.mesh -o 1 -r 3 -rf ${PROJECT_SOURCE_DIR}/miniapps/nurbs/meshes/two-cubes.ref)
|
||||
|
||||
add_test(NAME nurbs_ex1_periodic_2d
|
||||
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/pipe-nurbs-2d.mesh -o 2 -r 2 --master "3" --slave "4")
|
||||
|
||||
add_test(NAME nurbs_ex1_periodic_3d
|
||||
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/miniapps/nurbs/meshes/cube-nurbs.mesh -pm "1" -ps "2" -rf ${PROJECT_SOURCE_DIR}/miniapps/nurbs/meshes/cube.ref)
|
||||
-m ${PROJECT_SOURCE_DIR}/miniapps/nurbs/meshes/cube-nurbs.mesh
|
||||
-rf ${PROJECT_SOURCE_DIR}/miniapps/nurbs/meshes/cube.ref
|
||||
--master "1" --slave "2")
|
||||
|
||||
add_test(NAME nurbs_ex3_2d_r1_o2_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_ex3> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/square-nurbs.mesh -r 1 -o 2)
|
||||
|
||||
add_test(NAME nurbs_ex3_3d_r1_o2_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_ex3> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/cube-nurbs.mesh -r 1 -o 2)
|
||||
|
||||
add_test(NAME nurbs_ex5_2d_r1_o2_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_ex5> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/square-nurbs.mesh -r 1 -o 2)
|
||||
|
||||
add_test(NAME nurbs_ex5_3d_r1_o2_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_ex5> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/cube-nurbs.mesh -r 1 -o 2)
|
||||
|
||||
add_test(NAME nurbs_ex24_2d_r1_o2_p0_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_ex24> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/pipe-nurbs-2d.mesh -r 1 -o 2 -p 0)
|
||||
|
||||
add_test(NAME nurbs_ex24_2d_r1_o2_p2_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_ex24> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/pipe-nurbs-2d.mesh -r 1 -o 2 -p 2)
|
||||
|
||||
add_test(NAME nurbs_ex24_3d_r1_o2_p0_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_ex24> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/cube-nurbs.mesh -r 1 -o 2 -p 0)
|
||||
|
||||
add_test(NAME nurbs_ex24_3d_r1_o2_p1_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_ex24> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/cube-nurbs.mesh -r 1 -o 2 -p 1)
|
||||
|
||||
add_test(NAME nurbs_ex24_3d_r1_o2_p2_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_ex24> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/cube-nurbs.mesh -r 1 -o 2 -p 2)
|
||||
|
||||
add_test(NAME nurbs_solenoidal_2d_r1_o2_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_solenoidal> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/pipe-nurbs-2d.mesh -r 1 -o 2)
|
||||
|
||||
add_test(NAME nurbs_solenoidal_3d_r1_o2_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_solenoidal> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/cube-nurbs.mesh -r 1 -o 2)
|
||||
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_MPI)
|
||||
@@ -135,6 +206,10 @@ if (MFEM_USE_MPI)
|
||||
MAIN nurbs_ex1p.cpp
|
||||
LIBRARIES mfem)
|
||||
|
||||
add_mfem_miniapp(nurbs_ex11p
|
||||
MAIN nurbs_ex11p.cpp
|
||||
LIBRARIES mfem)
|
||||
|
||||
if (MFEM_ENABLE_TESTING)
|
||||
add_test(NAME nurbs_ex1p_np=4
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
@@ -169,13 +244,7 @@ if (MFEM_USE_MPI)
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS} $<TARGET_FILE:nurbs_ex1p> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/square-disc-nurbs-patch.mesh -o 2 --weak-bc -r 1)
|
||||
endif()
|
||||
|
||||
add_mfem_miniapp(nurbs_ex11p
|
||||
MAIN nurbs_ex11p.cpp
|
||||
LIBRARIES mfem)
|
||||
|
||||
if (MFEM_ENABLE_TESTING)
|
||||
add_test(NAME nurbs_ex11p_np=4
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS} $<TARGET_FILE:nurbs_ex11p> -no-vis
|
||||
|
||||
+33
-4
@@ -21,8 +21,7 @@ CONFIG_MK = $(MFEM_BUILD_DIR)/config/config.mk
|
||||
MFEM_LIB_FILE = mfem_is_not_built
|
||||
-include $(CONFIG_MK)
|
||||
|
||||
SEQ_MINIAPPS = nurbs_ex1 nurbs_patch_ex1 nurbs_curveint nurbs_printfunc nurbs_naca_cmesh
|
||||
|
||||
SEQ_MINIAPPS = nurbs_ex1 nurbs_patch_ex1 nurbs_ex3 nurbs_ex5 nurbs_ex24 nurbs_curveint nurbs_printfunc nurbs_solenoidal nurbs_naca_cmesh
|
||||
PAR_MINIAPPS = nurbs_ex1p nurbs_ex11p
|
||||
ifeq ($(MFEM_USE_MPI),NO)
|
||||
MINIAPPS = $(SEQ_MINIAPPS)
|
||||
@@ -103,6 +102,36 @@ endif
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(EX1PATCH_ARGS_2))
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(EX1PATCH_ARGS_3))
|
||||
|
||||
EX3_ARGS_1 := -m $(MFEM_DIR)/data/square-nurbs.mesh -r 1 -o 2
|
||||
EX3_ARGS_2 := -m $(MFEM_DIR)/data/cube-nurbs.mesh -r 1 -o 2
|
||||
nurbs_ex3-test-seq: nurbs_ex3
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(EX3_ARGS_1))
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(EX3_ARGS_2))
|
||||
|
||||
EX5_ARGS_1 := -m $(MFEM_DIR)/data/square-nurbs.mesh -r 1 -o 2
|
||||
EX5_ARGS_2 := -m $(MFEM_DIR)/data/cube-nurbs.mesh -r 1 -o 2
|
||||
nurbs_ex5-test-seq: nurbs_ex5
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(EX5_ARGS_1))
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(EX5_ARGS_2))
|
||||
|
||||
EX24_ARGS_1 := -m $(MFEM_DIR)/data/pipe-nurbs-2d.mesh -r 1 -o 2 -p 0
|
||||
EX24_ARGS_2 := -m $(MFEM_DIR)/data/pipe-nurbs-2d.mesh -r 1 -o 2 -p 2
|
||||
EX24_ARGS_3 := -m $(MFEM_DIR)/data/cube-nurbs.mesh -r 1 -o 2 -p 0
|
||||
EX24_ARGS_4 := -m $(MFEM_DIR)/data/cube-nurbs.mesh -r 1 -o 2 -p 1
|
||||
EX24_ARGS_5 := -m $(MFEM_DIR)/data/cube-nurbs.mesh -r 1 -o 2 -p 2
|
||||
nurbs_ex24-test-seq: nurbs_ex24
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(EX24_ARGS_1))
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(EX24_ARGS_2))
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(EX24_ARGS_3))
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(EX24_ARGS_4))
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(EX24_ARGS_5))
|
||||
|
||||
SOL_ARGS_1 := -m $(MFEM_DIR)/data/pipe-nurbs-2d.mesh -r 1 -o 2
|
||||
SOL_ARGS_1 := -m $(MFEM_DIR)/data/cube-nurbs.mesh -r 1 -o 2
|
||||
nurbs_sol-test-seq: nurbs_solenoidal
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(SOL_ARGS_1))
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(SOl_ARGS_2))
|
||||
|
||||
CI_ARGS_1 := -uw -n 9 -no-visit
|
||||
CI_ARGS_2 := -nw -n 9 -no-visit
|
||||
|
||||
@@ -151,6 +180,6 @@ clean-build:
|
||||
rm -rf *.dSYM *.TVD.*breakpoints
|
||||
|
||||
clean-exec:
|
||||
@rm -f refined.mesh sin-fit.mesh mesh.* sol.* mode_* naca-cmesh.mesh
|
||||
@rm -rf Example1*
|
||||
@rm -f refined.mesh sin-fit.mesh ex5.mesh exsol.mesh mesh.* sol.* mode_* naca-cmesh.mesh sol_?.gf
|
||||
@rm -rf Example1* Example3* Example5* Solenoidal_* ParaView
|
||||
@rm -rf CurveInt Naca_cmesh glvis_naca-cmesh.mesh
|
||||
|
||||
@@ -6,6 +6,7 @@
|
||||
// nurbs_ex1 -m ../../data/square-nurbs.mesh -o 2 --weak-bc
|
||||
// nurbs_ex1 -m ../../data/cube-nurbs.mesh -o 2 -no-ibp
|
||||
// nurbs_ex1 -m ../../data/pipe-nurbs-2d.mesh -o 2 -no-ibp
|
||||
// nurbs_ex1 -m ../../data/pipe-nurbs-2d.mesh -o 2 -r 2 --neu "3"
|
||||
// nurbs_ex1 -m ../../data/square-disc-nurbs.mesh -o -1
|
||||
// nurbs_ex1 -m ../../data/disc-nurbs.mesh -o -1
|
||||
// nurbs_ex1 -m ../../data/pipe-nurbs.mesh -o -1
|
||||
@@ -147,6 +148,7 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = -1;
|
||||
Array<int> master(0);
|
||||
Array<int> slave(0);
|
||||
Array<int> neu(0);
|
||||
bool static_cond = false;
|
||||
bool visualization = 1;
|
||||
int lod = 0;
|
||||
@@ -169,6 +171,8 @@ int main(int argc, char *argv[])
|
||||
"Master boundaries for periodic BCs");
|
||||
args.AddOption(&slave, "-ps", "--slave",
|
||||
"Slave boundaries for periodic BCs");
|
||||
args.AddOption(&neu, "-n", "--neu",
|
||||
"Boundaries with Neumann BCs");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree) or -1 for"
|
||||
" isoparametric space.");
|
||||
@@ -266,8 +270,6 @@ int main(int argc, char *argv[])
|
||||
slave.Load(in, psize);
|
||||
in.close();
|
||||
}
|
||||
master.Print();
|
||||
slave.Print();
|
||||
NURBSext->ConnectBoundaries(master,slave);
|
||||
}
|
||||
else if (order[0] == -1) // Isoparametric
|
||||
@@ -323,39 +325,84 @@ int main(int argc, char *argv[])
|
||||
// In this example, the boundary conditions are defined by marking all
|
||||
// the boundary attributes from the mesh as essential (Dirichlet) and
|
||||
// converting them to a list of true dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
Array<int> ess_bdr(0);
|
||||
Array<int> neu_bdr(0);
|
||||
Array<int> per_bdr(0);
|
||||
if (mesh->bdr_attributes.Size())
|
||||
{
|
||||
Array<int> ess_bdr(mesh->bdr_attributes.Max());
|
||||
if (strongBC)
|
||||
ess_bdr.SetSize(mesh->bdr_attributes.Max());
|
||||
neu_bdr.SetSize(mesh->bdr_attributes.Max());
|
||||
per_bdr.SetSize(mesh->bdr_attributes.Max());
|
||||
|
||||
ess_bdr = 1;
|
||||
neu_bdr = 0;
|
||||
per_bdr = 0;
|
||||
|
||||
// Apply Neumann BCs
|
||||
for (int i = 0; i < neu.Size(); i++)
|
||||
{
|
||||
ess_bdr = 1;
|
||||
}
|
||||
else
|
||||
{
|
||||
ess_bdr = 0;
|
||||
if ( neu[i]-1 >= 0 &&
|
||||
neu[i]-1 < mesh->bdr_attributes.Max())
|
||||
{
|
||||
ess_bdr[neu[i]-1] = 0;
|
||||
neu_bdr[neu[i]-1] = 1;
|
||||
}
|
||||
else
|
||||
{
|
||||
cout <<"Neumann boundary "<<neu[i]<<" out of range -- discarded"<< endl;
|
||||
}
|
||||
}
|
||||
|
||||
// Remove periodic BCs
|
||||
// Correct for periodic BCs
|
||||
for (int i = 0; i < master.Size(); i++)
|
||||
{
|
||||
ess_bdr[master[i]-1] = 0;
|
||||
ess_bdr[slave[i]-1] = 0;
|
||||
if ( master[i]-1 >= 0 &&
|
||||
master[i]-1 < mesh->bdr_attributes.Max())
|
||||
{
|
||||
ess_bdr[master[i]-1] = 0;
|
||||
neu_bdr[master[i]-1] = 0;
|
||||
per_bdr[master[i]-1] = 1;
|
||||
}
|
||||
else
|
||||
{
|
||||
cout <<"Master boundary "<<master[i]<<" out of range -- discarded"<< endl;
|
||||
}
|
||||
}
|
||||
for (int i = 0; i < slave.Size(); i++)
|
||||
{
|
||||
if ( slave[i]-1 >= 0 &&
|
||||
slave[i]-1 < mesh->bdr_attributes.Max())
|
||||
{
|
||||
ess_bdr[slave[i]-1] = 0;
|
||||
neu_bdr[slave[i]-1] = 0;
|
||||
per_bdr[slave[i]-1] = 1;
|
||||
}
|
||||
else
|
||||
{
|
||||
cout <<"Slave boundary "<<slave[i]<<" out of range -- discarded"<< endl;
|
||||
}
|
||||
}
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
cout <<"Boundary conditions:"<< endl;
|
||||
cout <<" - Periodic : "; per_bdr.Print();
|
||||
cout <<" - Essential : "; ess_bdr.Print();
|
||||
cout <<" - Neumann : "; neu_bdr.Print();
|
||||
|
||||
|
||||
// 6. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// the FEM linear system, which in this case is (1,phi_i) where phi_i are
|
||||
// the basis functions in the finite element fespace.
|
||||
ConstantCoefficient one(1.0);
|
||||
ConstantCoefficient mone(-1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
|
||||
LinearForm *b = new LinearForm(fespace);
|
||||
b->AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b->AddBoundaryIntegrator( new BoundaryLFIntegrator(one),neu_bdr);
|
||||
if (!strongBC)
|
||||
b->AddBdrFaceIntegrator(
|
||||
new DGDirichletLFIntegrator(zero, one, -1.0, kappa));
|
||||
new DGDirichletLFIntegrator(zero, one, -1.0, kappa), ess_bdr);
|
||||
|
||||
b->Assemble();
|
||||
|
||||
// 7. Define the solution vector x as a finite element grid function
|
||||
@@ -375,11 +422,12 @@ int main(int argc, char *argv[])
|
||||
else
|
||||
{
|
||||
a->AddDomainIntegrator(new Diffusion2Integrator(one));
|
||||
a->AddBdrFaceIntegrator(new DGDiffusionIntegrator(mone, 0.0, 0.0), neu_bdr);
|
||||
}
|
||||
|
||||
if (!strongBC)
|
||||
{
|
||||
a->AddBdrFaceIntegrator(new DGDiffusionIntegrator(one, -1.0, kappa));
|
||||
a->AddBdrFaceIntegrator(new DGDiffusionIntegrator(one, -1.0, kappa), ess_bdr);
|
||||
}
|
||||
|
||||
// 9. Assemble the bilinear form and the corresponding linear system,
|
||||
@@ -391,6 +439,11 @@ int main(int argc, char *argv[])
|
||||
|
||||
SparseMatrix A;
|
||||
Vector B, X;
|
||||
Array<int> ess_tdof_list(0);
|
||||
if (strongBC)
|
||||
{
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
|
||||
|
||||
cout << "Size of linear system: " << A.Height() << endl;
|
||||
|
||||
@@ -0,0 +1,459 @@
|
||||
// MFEM Example 24 -- modified for NURBS FE
|
||||
//
|
||||
// Compile with: make nurbs_ex24
|
||||
//
|
||||
// Sample runs: nurbs_ex24 -m ../../data/pipe-nurbs-2d.mesh -o 2
|
||||
// nurbs_ex24 -m ../../data/pipe-nurbs-2d.mesh -p 2
|
||||
// nurbs_ex24 -m ../../data/cube-nurbs.mesh -o 2
|
||||
// nurbs_ex24 -m ../../data/cube-nurbs.mesh -o 2 -p 1
|
||||
// nurbs_ex24 -m ../../data/cube-nurbs.mesh -o 2 -p 2
|
||||
// nurbs_ex24 -m ../../data/escher.mesh
|
||||
// nurbs_ex24 -m ../../data/escher.mesh -o 2
|
||||
// nurbs_ex24 -m ../../data/fichera.mesh
|
||||
// nurbs_ex24 -m ../../data/fichera-q2.vtk
|
||||
// nurbs_ex24 -m ../../data/fichera-q3.mesh
|
||||
// nurbs_ex24 -m ../../data/amr-quad.mesh -o 2
|
||||
// nurbs_ex24 -m ../../data/amr-hex.mesh
|
||||
//
|
||||
// Device sample runs -- do not work for NURBS:
|
||||
// nurbs_ex24 -m ../../data/escher.mesh -pa -d cuda
|
||||
// nurbs_ex24 -m ../../data/escher.mesh -pa -d raja-cuda
|
||||
// nurbs_ex24 -m ../../data/escher.mesh -pa -d raja-omp
|
||||
//
|
||||
// Description: This example code illustrates usage of mixed finite element
|
||||
// spaces, with three variants:
|
||||
//
|
||||
// 0) (grad p, u) for p in H^1 tested against u in H(curl)
|
||||
// 1) (curl v, u) for v in H(curl) tested against u in H(div), 3D
|
||||
// 2) (div v, q) for v in H(div) tested against q in L_2
|
||||
//
|
||||
// Using different approaches, we project the gradient, curl, or
|
||||
// divergence to the appropriate space.
|
||||
//
|
||||
// NURBS-based H(curl) and H(div) spaces only implemented
|
||||
// for meshes consisting of a single patch.
|
||||
//
|
||||
// We recommend viewing examples 1, 3, and 5 before viewing this
|
||||
// example.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
real_t p_exact(const Vector &x);
|
||||
void gradp_exact(const Vector &, Vector &);
|
||||
real_t div_gradp_exact(const Vector &x);
|
||||
void v_exact(const Vector &x, Vector &v);
|
||||
void curlv_exact(const Vector &x, Vector &cv);
|
||||
|
||||
int dim;
|
||||
real_t freq = 1.0, kappa;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command-line options.
|
||||
const char *mesh_file = "../../data/cube-nurbs.mesh";
|
||||
int ref_levels = -1;
|
||||
int order = 1;
|
||||
bool NURBS = true;
|
||||
int prob = 0;
|
||||
bool static_cond = false;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = 1;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&ref_levels, "-r", "--refine",
|
||||
"Number of times to refine the mesh uniformly, -1 for auto.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&NURBS, "-n", "--nurbs", "-nn","--no-nurbs",
|
||||
"NURBS.");
|
||||
args.AddOption(&prob, "-p", "--problem-type",
|
||||
"Choose between 0: grad, 1: curl, 2: div");
|
||||
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
kappa = freq * M_PI;
|
||||
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 3. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
|
||||
// the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
dim = mesh->Dimension();
|
||||
if ((prob == 1) &&(dim != 3))
|
||||
{
|
||||
MFEM_ABORT("The curl problem is only defined in 3D.");
|
||||
}
|
||||
int sdim = mesh->SpaceDimension();
|
||||
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
|
||||
// largest number that gives a final mesh with no more than 50,000
|
||||
// elements.
|
||||
{
|
||||
if (ref_levels < 0)
|
||||
{
|
||||
ref_levels = (int)floor(log(50000./mesh->GetNE())/log(2.)/dim);
|
||||
}
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 5. Define a finite element space on the mesh. Here we use Nedelec or
|
||||
// Raviart-Thomas finite elements of the specified order.
|
||||
FiniteElementCollection *trial_fec = nullptr;
|
||||
FiniteElementCollection *test_fec = nullptr;
|
||||
NURBSExtension *NURBSext = nullptr;
|
||||
if (mesh->NURBSext && NURBS)
|
||||
{
|
||||
NURBSext = new NURBSExtension(mesh->NURBSext, order);
|
||||
if (prob == 0)
|
||||
{
|
||||
trial_fec = new NURBSFECollection(order);
|
||||
test_fec = new NURBS_HCurlFECollection(order, dim);
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
trial_fec = new NURBS_HCurlFECollection(order, dim);
|
||||
test_fec = new NURBS_HDivFECollection(order, dim);
|
||||
}
|
||||
else
|
||||
{
|
||||
trial_fec = new NURBS_HDivFECollection(order, dim);
|
||||
test_fec = new NURBSFECollection(order);
|
||||
}
|
||||
mfem::out<<"Create NURBS fec and ext"<<std::endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
if (prob == 0)
|
||||
{
|
||||
trial_fec = new H1_FECollection(order, dim);
|
||||
test_fec = new ND_FECollection(order, dim);
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
trial_fec = new ND_FECollection(order, dim);
|
||||
test_fec = new RT_FECollection(order-1, dim);
|
||||
}
|
||||
else
|
||||
{
|
||||
trial_fec = new RT_FECollection(order-1, dim);
|
||||
test_fec = new L2_FECollection(order-1, dim);
|
||||
}
|
||||
}
|
||||
|
||||
FiniteElementSpace trial_fes(mesh, NURBSext, trial_fec);
|
||||
FiniteElementSpace test_fes(mesh,trial_fes.StealNURBSext(), test_fec);
|
||||
|
||||
int trial_size = trial_fes.GetTrueVSize();
|
||||
int test_size = test_fes.GetTrueVSize();
|
||||
|
||||
if (prob == 0)
|
||||
{
|
||||
cout << "Number of Nedelec finite element unknowns: " << test_size << endl;
|
||||
cout << "Number of H1 finite element unknowns: " << trial_size << endl;
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
cout << "Number of Nedelec finite element unknowns: " << trial_size << endl;
|
||||
cout << "Number of Raviart-Thomas finite element unknowns: " << test_size <<
|
||||
endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
cout << "Number of Raviart-Thomas finite element unknowns: "
|
||||
<< trial_size << endl;
|
||||
cout << "Number of L2 finite element unknowns: " << test_size << endl;
|
||||
}
|
||||
|
||||
// 6. Define the solution vector as a finite element grid function
|
||||
// corresponding to the trial fespace.
|
||||
GridFunction gftest(&test_fes);
|
||||
GridFunction gftrial(&trial_fes);
|
||||
GridFunction x(&test_fes);
|
||||
FunctionCoefficient p_coef(p_exact);
|
||||
VectorFunctionCoefficient gradp_coef(sdim, gradp_exact);
|
||||
VectorFunctionCoefficient v_coef(sdim, v_exact);
|
||||
VectorFunctionCoefficient curlv_coef(sdim, curlv_exact);
|
||||
FunctionCoefficient divgradp_coef(div_gradp_exact);
|
||||
|
||||
if (prob == 0)
|
||||
{
|
||||
gftrial.ProjectCoefficient(p_coef);
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
gftrial.ProjectCoefficient(v_coef);
|
||||
}
|
||||
else
|
||||
{
|
||||
gftrial.ProjectCoefficient(gradp_coef);
|
||||
}
|
||||
|
||||
gftrial.SetTrueVector();
|
||||
gftrial.SetFromTrueVector();
|
||||
|
||||
// 7. Set up the bilinear forms for L2 projection.
|
||||
ConstantCoefficient one(1.0);
|
||||
BilinearForm a(&test_fes);
|
||||
MixedBilinearForm a_mixed(&trial_fes, &test_fes);
|
||||
if (pa)
|
||||
{
|
||||
a.SetAssemblyLevel(AssemblyLevel::PARTIAL);
|
||||
a_mixed.SetAssemblyLevel(AssemblyLevel::PARTIAL);
|
||||
}
|
||||
|
||||
if (prob == 0)
|
||||
{
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(one));
|
||||
a_mixed.AddDomainIntegrator(new MixedVectorGradientIntegrator(one));
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(one));
|
||||
a_mixed.AddDomainIntegrator(new MixedVectorCurlIntegrator(one));
|
||||
}
|
||||
else
|
||||
{
|
||||
a.AddDomainIntegrator(new MassIntegrator(one));
|
||||
a_mixed.AddDomainIntegrator(new VectorFEDivergenceIntegrator(one));
|
||||
}
|
||||
|
||||
// 8. Assemble the bilinear form and the corresponding linear system,
|
||||
// applying any necessary transformations such as: eliminating boundary
|
||||
// conditions, applying conforming constraints for non-conforming AMR,
|
||||
// static condensation, etc.
|
||||
if (static_cond) { a.EnableStaticCondensation(); }
|
||||
|
||||
a.Assemble();
|
||||
if (!pa) { a.Finalize(); }
|
||||
|
||||
a_mixed.Assemble();
|
||||
if (!pa) { a_mixed.Finalize(); }
|
||||
|
||||
if (pa)
|
||||
{
|
||||
a_mixed.Mult(gftrial, x);
|
||||
}
|
||||
else
|
||||
{
|
||||
SparseMatrix& mixed = a_mixed.SpMat();
|
||||
mixed.Mult(gftrial, x);
|
||||
}
|
||||
|
||||
// 9. Define and apply a PCG solver for Ax = b with Jacobi preconditioner.
|
||||
{
|
||||
GridFunction rhs(&test_fes);
|
||||
rhs = x;
|
||||
x = 0.0;
|
||||
|
||||
CGSolver cg;
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(1000);
|
||||
cg.SetPrintLevel(1);
|
||||
if (pa)
|
||||
{
|
||||
Array<int> ess_tdof_list; // empty
|
||||
OperatorJacobiSmoother Jacobi(a, ess_tdof_list);
|
||||
|
||||
cg.SetOperator(a);
|
||||
cg.SetPreconditioner(Jacobi);
|
||||
cg.Mult(rhs, x);
|
||||
}
|
||||
else
|
||||
{
|
||||
SparseMatrix& Amat = a.SpMat();
|
||||
DSmoother Jacobi(Amat);
|
||||
|
||||
cg.SetOperator(Amat);
|
||||
cg.SetPreconditioner(Jacobi);
|
||||
cg.Mult(rhs, x);
|
||||
}
|
||||
}
|
||||
|
||||
// 10. Compute the projection of the exact field.
|
||||
GridFunction exact_proj(&test_fes);
|
||||
if (prob == 0)
|
||||
{
|
||||
exact_proj.ProjectCoefficient(gradp_coef);
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
exact_proj.ProjectCoefficient(curlv_coef);
|
||||
}
|
||||
else
|
||||
{
|
||||
exact_proj.ProjectCoefficient(divgradp_coef);
|
||||
}
|
||||
|
||||
exact_proj.SetTrueVector();
|
||||
exact_proj.SetFromTrueVector();
|
||||
|
||||
// 11. Compute and print the L_2 norm of the error.
|
||||
if (prob == 0)
|
||||
{
|
||||
real_t errSol = x.ComputeL2Error(gradp_coef);
|
||||
real_t errProj = exact_proj.ComputeL2Error(gradp_coef);
|
||||
|
||||
cout << "\n Solution of (E_h,v) = (grad p_h,v) for E_h and v in H(curl): "
|
||||
"|| E_h - grad p ||_{L_2} = " << errSol << '\n' << endl;
|
||||
cout << " Projection E_h of exact grad p in H(curl): || E_h - grad p "
|
||||
"||_{L_2} = " << errProj << '\n' << endl;
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
real_t errSol = x.ComputeL2Error(curlv_coef);
|
||||
real_t errProj = exact_proj.ComputeL2Error(curlv_coef);
|
||||
|
||||
cout << "\n Solution of (E_h,w) = (curl v_h,w) for E_h and w in H(div): "
|
||||
"|| E_h - curl v ||_{L_2} = " << errSol << '\n' << endl;
|
||||
cout << " Projection E_h of exact curl v in H(div): || E_h - curl v "
|
||||
"||_{L_2} = " << errProj << '\n' << endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
int order_quad = max(3, 2*order+1);
|
||||
const IntegrationRule *irs[Geometry::NumGeom];
|
||||
for (int i=0; i < Geometry::NumGeom; ++i)
|
||||
{
|
||||
irs[i] = &(IntRules.Get(i, order_quad));
|
||||
}
|
||||
|
||||
real_t errSol = x.ComputeL2Error(divgradp_coef, irs);
|
||||
real_t errProj = exact_proj.ComputeL2Error(divgradp_coef, irs);
|
||||
|
||||
cout << "\n Solution of (f_h,q) = (div v_h,q) for f_h and q in L_2: "
|
||||
"|| f_h - div v ||_{L_2} = " << errSol << '\n' << endl;
|
||||
|
||||
cout << " Projection f_h of exact div v in L_2: || f_h - div v "
|
||||
"||_{L_2} = " << errProj << '\n' << endl;
|
||||
}
|
||||
|
||||
// 12. Save the refined mesh and the solution. This output can be viewed
|
||||
// later using GLVis: "glvis -m refined.mesh -g sol.gf".
|
||||
ofstream mesh_ofs("refined.mesh");
|
||||
mesh_ofs.precision(8);
|
||||
mesh->Print(mesh_ofs);
|
||||
ofstream sol_ofs("sol.gf");
|
||||
sol_ofs.precision(8);
|
||||
x.Save(sol_ofs);
|
||||
|
||||
// 13. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << *mesh << x << flush;
|
||||
}
|
||||
|
||||
// 14. Free the used memory.
|
||||
delete trial_fec;
|
||||
delete test_fec;
|
||||
delete mesh;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
real_t p_exact(const Vector &x)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
return sin(x(0)) * sin(x(1)) * sin(x(2));
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
return sin(x(0)) * sin(x(1));
|
||||
}
|
||||
|
||||
return 0.0;
|
||||
}
|
||||
|
||||
void gradp_exact(const Vector &x, Vector &f)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
f(0) = cos(x(0)) * sin(x(1)) * sin(x(2));
|
||||
f(1) = sin(x(0)) * cos(x(1)) * sin(x(2));
|
||||
f(2) = sin(x(0)) * sin(x(1)) * cos(x(2));
|
||||
}
|
||||
else
|
||||
{
|
||||
f(0) = cos(x(0)) * sin(x(1));
|
||||
f(1) = sin(x(0)) * cos(x(1));
|
||||
if (x.Size() == 3) { f(2) = 0.0; }
|
||||
}
|
||||
}
|
||||
|
||||
real_t div_gradp_exact(const Vector &x)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
return -3.0 * sin(x(0)) * sin(x(1)) * sin(x(2));
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
return -2.0 * sin(x(0)) * sin(x(1));
|
||||
}
|
||||
|
||||
return 0.0;
|
||||
}
|
||||
|
||||
void v_exact(const Vector &x, Vector &v)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
v(0) = sin(kappa * x(1));
|
||||
v(1) = sin(kappa * x(2));
|
||||
v(2) = sin(kappa * x(0));
|
||||
}
|
||||
else
|
||||
{
|
||||
v(0) = sin(kappa * x(1));
|
||||
v(1) = sin(kappa * x(0));
|
||||
if (x.Size() == 3) { v(2) = 0.0; }
|
||||
}
|
||||
}
|
||||
|
||||
void curlv_exact(const Vector &x, Vector &cv)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
cv(0) = -kappa * cos(kappa * x(2));
|
||||
cv(1) = -kappa * cos(kappa * x(0));
|
||||
cv(2) = -kappa * cos(kappa * x(1));
|
||||
}
|
||||
else
|
||||
{
|
||||
cv = 0.0;
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,284 @@
|
||||
// MFEM Example 3 -- modified for NURBS FE
|
||||
//
|
||||
// Compile with: make nurbs_ex3
|
||||
//
|
||||
// Sample runs: nurbs_ex3 -m ../../data/square-nurbs.mesh
|
||||
// nurbs_ex3 -m ../../data/square-nurbs.mesh -o 2
|
||||
// nurbs_ex3 -m ../../data/cube-nurbs.mesh
|
||||
//
|
||||
// Description: This example code solves a simple electromagnetic diffusion
|
||||
// problem corresponding to the second order definite Maxwell
|
||||
// equation curl curl E + E = f with boundary condition
|
||||
// E x n = <given tangential field>. Here, we use a given exact
|
||||
// solution E and compute the corresponding r.h.s. f.
|
||||
// We discretize with Nedelec finite elements in 2D or 3D.
|
||||
//
|
||||
// The example demonstrates the use of H(curl) finite element
|
||||
// spaces with the curl-curl and the (vector finite element) mass
|
||||
// bilinear form, as well as the computation of discretization
|
||||
// error when the exact solution is known. Static condensation is
|
||||
// also illustrated.
|
||||
//
|
||||
// NURBS-based H(curl) spaces only implemented for meshes
|
||||
// consisting of a single patch.
|
||||
//
|
||||
// We recommend viewing examples 1-2 before viewing this example.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
// Exact solution, E, and r.h.s., f. See below for implementation.
|
||||
void E_exact(const Vector &, Vector &);
|
||||
void f_exact(const Vector &, Vector &);
|
||||
real_t freq = 1.0, kappa;
|
||||
int dim;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command-line options.
|
||||
const char *mesh_file = "../../data/square-nurbs.mesh";
|
||||
int ref_levels = -1;
|
||||
bool NURBS = true;
|
||||
int order = 1;
|
||||
bool static_cond = false;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = 1;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&ref_levels, "-r", "--refine",
|
||||
"Number of times to refine the mesh uniformly, -1 for auto.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&NURBS, "-n", "--nurbs", "-nn","--no-nurbs",
|
||||
"NURBS.");
|
||||
args.AddOption(&freq, "-f", "--frequency", "Set the frequency for the exact"
|
||||
" solution.");
|
||||
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
kappa = freq * M_PI;
|
||||
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 3. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
|
||||
// the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
dim = mesh->Dimension();
|
||||
int sdim = mesh->SpaceDimension();
|
||||
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
|
||||
// largest number that gives a final mesh with no more than 50,000
|
||||
// elements.
|
||||
{
|
||||
if (ref_levels < 0)
|
||||
{
|
||||
ref_levels =
|
||||
(int)floor(log(50000./mesh->GetNE())/log(2.)/dim);
|
||||
}
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 5. Define a finite element space on the mesh. Here we use the
|
||||
// Raviart-Thomas finite elements of the specified order.
|
||||
FiniteElementCollection *fec = nullptr;
|
||||
NURBSExtension *NURBSext = nullptr;
|
||||
|
||||
if (mesh->NURBSext && NURBS)
|
||||
{
|
||||
fec = new NURBS_HCurlFECollection(order,dim);
|
||||
NURBSext = new NURBSExtension(mesh->NURBSext, order);
|
||||
mfem::out<<"Create NURBS fec and ext"<<std::endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
NURBS = false;
|
||||
fec = new ND_FECollection(order, dim);
|
||||
mfem::out<<"Create Normal fec"<<std::endl;
|
||||
}
|
||||
|
||||
FiniteElementSpace *fespace = new FiniteElementSpace(mesh, NURBSext, fec);
|
||||
cout << "Number of finite element unknowns: "
|
||||
<< fespace->GetTrueVSize() << endl;
|
||||
|
||||
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
// In this example, the boundary conditions are defined by marking all
|
||||
// the boundary attributes from the mesh as essential (Dirichlet) and
|
||||
// converting them to a list of true dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
if (mesh->bdr_attributes.Size())
|
||||
{
|
||||
Array<int> ess_bdr(mesh->bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
cout << "Number of knowns in essential BCs: "
|
||||
<< ess_tdof_list.Size() << endl;
|
||||
|
||||
// 7. Set up the linear form b(.) which corresponds to the right-hand side
|
||||
// of the FEM linear system, which in this case is (f,phi_i) where f is
|
||||
// given by the function f_exact and phi_i are the basis functions in the
|
||||
// finite element fespace.
|
||||
VectorFunctionCoefficient f(sdim, f_exact);
|
||||
LinearForm *b = new LinearForm(fespace);
|
||||
b->AddDomainIntegrator(new VectorFEDomainLFIntegrator(f));
|
||||
b->Assemble();
|
||||
|
||||
// 8. Define the solution vector x as a finite element grid function
|
||||
// corresponding to fespace. Initialize x by projecting the exact
|
||||
// solution. Note that only values from the boundary edges will be used
|
||||
// when eliminating the non-homogeneous boundary condition to modify the
|
||||
// r.h.s. vector b.
|
||||
GridFunction x(fespace);
|
||||
VectorFunctionCoefficient E(sdim, E_exact);
|
||||
x.ProjectCoefficient(E);
|
||||
|
||||
// 9. Set up the bilinear form corresponding to the EM diffusion operator
|
||||
// curl muinv curl + sigma I, by adding the curl-curl and the mass domain
|
||||
// integrators.
|
||||
Coefficient *muinv = new ConstantCoefficient(1.0);
|
||||
Coefficient *sigma = new ConstantCoefficient(1.0);
|
||||
BilinearForm *a = new BilinearForm(fespace);
|
||||
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a->AddDomainIntegrator(new CurlCurlIntegrator(*muinv));
|
||||
a->AddDomainIntegrator(new VectorFEMassIntegrator(*sigma));
|
||||
|
||||
// 10. Assemble the bilinear form and the corresponding linear system,
|
||||
// applying any necessary transformations such as: eliminating boundary
|
||||
// conditions, applying conforming constraints for non-conforming AMR,
|
||||
// static condensation, etc.
|
||||
if (static_cond) { a->EnableStaticCondensation(); }
|
||||
a->Assemble();
|
||||
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
|
||||
|
||||
cout << "Size of linear system: " << A->Height() << endl;
|
||||
|
||||
// 11. Solve the linear system A X = B.
|
||||
if (pa) // Jacobi preconditioning in partial assembly mode
|
||||
{
|
||||
OperatorJacobiSmoother M(*a, ess_tdof_list);
|
||||
PCG(*A, M, B, X, 1, 1000, 1e-12, 0.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
// 11. Define a simple symmetric Gauss-Seidel preconditioner and use it to
|
||||
// solve the system Ax=b with PCG.
|
||||
GSSmoother M((SparseMatrix&)(*A));
|
||||
PCG(*A, M, B, X, 1, 500, 1e-12, 0.0);
|
||||
#else
|
||||
// 11. If MFEM was compiled with SuiteSparse, use UMFPACK to solve the
|
||||
// system.
|
||||
UMFPackSolver umf_solver;
|
||||
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
umf_solver.SetOperator(*A);
|
||||
umf_solver.Mult(B, X);
|
||||
#endif
|
||||
}
|
||||
|
||||
// 12. Recover the solution as a finite element grid function.
|
||||
a->RecoverFEMSolution(X, *b, x);
|
||||
|
||||
// 13. Compute and print the L^2 norm of the error.
|
||||
cout << "\n|| E_h - E ||_{L^2} = " << x.ComputeL2Error(E) << '\n' << endl;
|
||||
|
||||
// 14. Save the refined mesh and the solution. This output can be viewed
|
||||
// later using GLVis: "glvis -m refined.mesh -g sol.gf".
|
||||
{
|
||||
ofstream mesh_ofs("refined.mesh");
|
||||
mesh_ofs.precision(8);
|
||||
mesh->Print(mesh_ofs);
|
||||
ofstream sol_ofs("sol.gf");
|
||||
sol_ofs.precision(8);
|
||||
x.Save(sol_ofs);
|
||||
}
|
||||
|
||||
// 15. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << *mesh << x << flush;
|
||||
}
|
||||
|
||||
// 16. Create output in visit format
|
||||
VisItDataCollection visit_dc("Example3", mesh);
|
||||
visit_dc.RegisterField("x", &x);
|
||||
visit_dc.Save();
|
||||
|
||||
// 17. Free the used memory.
|
||||
delete a;
|
||||
delete sigma;
|
||||
delete muinv;
|
||||
delete b;
|
||||
delete fespace;
|
||||
delete fec;
|
||||
delete mesh;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
|
||||
void E_exact(const Vector &x, Vector &E)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
E(0) = sin(kappa * x(1));
|
||||
E(1) = sin(kappa * x(2));
|
||||
E(2) = sin(kappa * x(0));
|
||||
}
|
||||
else
|
||||
{
|
||||
E(0) = sin(kappa * x(1));
|
||||
E(1) = sin(kappa * x(0));
|
||||
if (x.Size() == 3) { E(2) = 0.0; }
|
||||
}
|
||||
}
|
||||
|
||||
void f_exact(const Vector &x, Vector &f)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
f(0) = (1. + kappa * kappa) * sin(kappa * x(1));
|
||||
f(1) = (1. + kappa * kappa) * sin(kappa * x(2));
|
||||
f(2) = (1. + kappa * kappa) * sin(kappa * x(0));
|
||||
}
|
||||
else
|
||||
{
|
||||
f(0) = (1. + kappa * kappa) * sin(kappa * x(1));
|
||||
f(1) = (1. + kappa * kappa) * sin(kappa * x(0));
|
||||
if (x.Size() == 3) { f(2) = 0.0; }
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,498 @@
|
||||
// MFEM Example 5 -- modified for NURBS FE
|
||||
//
|
||||
// Compile with: make nurbs_ex5
|
||||
//
|
||||
// Sample runs: nurbs_ex5 -m ../../data/square-nurbs.mesh -o 3
|
||||
// nurbs_ex5 -m ../../data/cube-nurbs.mesh -r 3
|
||||
// nurbs_ex5 -m ../../data/pipe-nurbs-2d.mesh
|
||||
// nurbs_ex5 -m ../../data/beam-tet.mesh
|
||||
// nurbs_ex5 -m ../../data/beam-hex.mesh
|
||||
// nurbs_ex5 -m ../../data/escher.mesh
|
||||
// nurbs_ex5 -m ../../data/fichera.mesh
|
||||
//
|
||||
// Device sample runs -- do not work for NURBS:
|
||||
// nurbs_ex5 -m ../../data/escher.mesh -pa -d cuda
|
||||
// nurbs_ex5 -m ../../data/escher.mesh -pa -d raja-cuda
|
||||
// nurbs_ex5 -m ../../data/escher.mesh -pa -d raja-omp
|
||||
//
|
||||
// Description: This example code solves a simple 2D/3D mixed Darcy problem
|
||||
// corresponding to the saddle point system
|
||||
//
|
||||
// k*u + grad p = f
|
||||
// - div u = g
|
||||
//
|
||||
// with natural boundary condition -p = <given pressure>.
|
||||
// Here, we use a given exact solution (u,p) and compute the
|
||||
// corresponding r.h.s. (f,g). We discretize with Raviart-Thomas
|
||||
// finite elements (velocity u) and piecewise discontinuous
|
||||
// polynomials (pressure p).
|
||||
//
|
||||
// NURBS-based H(div) spaces only implemented for meshes
|
||||
// consisting of a single patch.
|
||||
//
|
||||
// The example demonstrates the use of the BlockOperator class, as
|
||||
// well as the collective saving of several grid functions in
|
||||
// VisIt (visit.llnl.gov) and ParaView (paraview.org) formats.
|
||||
//
|
||||
// We recommend viewing examples 1-4 before viewing this example.
|
||||
|
||||
// Sample runs: nurbs_ex3 -m ../../data/square-nurbs.mesh
|
||||
// nurbs_ex3 -m ../../data/square-nurbs.mesh -o 2
|
||||
// nurbs_ex3 -m ../../data/cube-nurbs.mesh
|
||||
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
#include <algorithm>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
// Define the analytical solution and forcing terms / boundary conditions
|
||||
void uFun_ex(const Vector & x, Vector & u);
|
||||
real_t pFun_ex(const Vector & x);
|
||||
void fFun(const Vector & x, Vector & f);
|
||||
real_t gFun(const Vector & x);
|
||||
real_t f_natural(const Vector & x);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
StopWatch chrono;
|
||||
|
||||
// 1. Parse command-line options.
|
||||
const char *mesh_file = "../../data/square-nurbs.mesh";
|
||||
int ref_levels = -1;
|
||||
int order = 1;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = 1;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&ref_levels, "-r", "--refine",
|
||||
"Number of times to refine the mesh uniformly, -1 for auto.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 3. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
|
||||
// the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
|
||||
// largest number that gives a final mesh with no more than 10,000
|
||||
// elements.
|
||||
{
|
||||
if (ref_levels < 0)
|
||||
{
|
||||
ref_levels =
|
||||
(int)floor(log(10000./mesh->GetNE())/log(2.)/dim);
|
||||
}
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 5. Define a finite element space on the mesh. Here we use the
|
||||
// Raviart-Thomas finite elements of the specified order.
|
||||
FiniteElementCollection *hdiv_coll = nullptr;
|
||||
FiniteElementCollection *l2_coll = nullptr;
|
||||
NURBSExtension *NURBSext = nullptr;
|
||||
|
||||
if (mesh->NURBSext && !pa)
|
||||
{
|
||||
hdiv_coll = new NURBS_HDivFECollection(order,dim);
|
||||
l2_coll = new NURBSFECollection(order);
|
||||
NURBSext = new NURBSExtension(mesh->NURBSext, order);
|
||||
mfem::out<<"Create NURBS fec and ext"<<std::endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
hdiv_coll = new RT_FECollection(order, dim);
|
||||
l2_coll = new L2_FECollection(order, dim);
|
||||
mfem::out<<"Create Normal fec"<<std::endl;
|
||||
}
|
||||
pa = false;
|
||||
FiniteElementSpace *W_space = new FiniteElementSpace(mesh, NURBSext, l2_coll);
|
||||
FiniteElementSpace *R_space = new FiniteElementSpace(mesh,
|
||||
W_space->StealNURBSext(),
|
||||
hdiv_coll);
|
||||
|
||||
// 6. Define the BlockStructure of the problem, i.e. define the array of
|
||||
// offsets for each variable. The last component of the Array is the sum
|
||||
// of the dimensions of each block.
|
||||
Array<int> block_offsets(3); // number of variables + 1
|
||||
block_offsets[0] = 0;
|
||||
block_offsets[1] = R_space->GetVSize();
|
||||
block_offsets[2] = W_space->GetVSize();
|
||||
block_offsets.PartialSum();
|
||||
|
||||
std::cout << "***********************************************************\n";
|
||||
std::cout << "dim(R) = " << block_offsets[1] - block_offsets[0] << "\n";
|
||||
std::cout << "dim(W) = " << block_offsets[2] - block_offsets[1] << "\n";
|
||||
std::cout << "dim(R+W) = " << block_offsets.Last() << "\n";
|
||||
std::cout << "***********************************************************\n";
|
||||
{
|
||||
Array<int> ess_tdof_list;
|
||||
if (mesh->bdr_attributes.Size())
|
||||
{
|
||||
Array<int> ess_bdr(mesh->bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
R_space->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
cout << "Number boundary dofs in H(div): "
|
||||
<< ess_tdof_list.Size() << endl;
|
||||
}
|
||||
|
||||
{
|
||||
Array<int> ess_tdof_list;
|
||||
if (mesh->bdr_attributes.Size())
|
||||
{
|
||||
Array<int> ess_bdr(mesh->bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
W_space->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
cout << "Number boundary dofs in H1: "
|
||||
<< ess_tdof_list.Size() << endl;
|
||||
}
|
||||
|
||||
// 7. Define the coefficients, analytical solution, and rhs of the PDE.
|
||||
ConstantCoefficient k(1.0);
|
||||
|
||||
VectorFunctionCoefficient fcoeff(dim, fFun);
|
||||
FunctionCoefficient fnatcoeff(f_natural);
|
||||
FunctionCoefficient gcoeff(gFun);
|
||||
|
||||
VectorFunctionCoefficient ucoeff(dim, uFun_ex);
|
||||
FunctionCoefficient pcoeff(pFun_ex);
|
||||
|
||||
// 8. Allocate memory (x, rhs) for the analytical solution and the right hand
|
||||
// side. Define the GridFunction u,p for the finite element solution and
|
||||
// linear forms fform and gform for the right hand side. The data
|
||||
// allocated by x and rhs are passed as a reference to the grid functions
|
||||
// (u,p) and the linear forms (fform, gform).
|
||||
MemoryType mt = device.GetMemoryType();
|
||||
BlockVector x(block_offsets, mt), rhs(block_offsets, mt);
|
||||
|
||||
LinearForm *fform(new LinearForm);
|
||||
fform->Update(R_space, rhs.GetBlock(0), 0);
|
||||
fform->AddDomainIntegrator(new VectorFEDomainLFIntegrator(fcoeff));
|
||||
fform->AddBoundaryIntegrator(new VectorFEBoundaryFluxLFIntegrator(fnatcoeff));
|
||||
fform->Assemble();
|
||||
fform->SyncAliasMemory(rhs);
|
||||
|
||||
LinearForm *gform(new LinearForm);
|
||||
gform->Update(W_space, rhs.GetBlock(1), 0);
|
||||
gform->AddDomainIntegrator(new DomainLFIntegrator(gcoeff));
|
||||
gform->Assemble();
|
||||
gform->SyncAliasMemory(rhs);
|
||||
|
||||
// 9. Assemble the finite element matrices for the Darcy operator
|
||||
//
|
||||
// D = [ M B^T ]
|
||||
// [ B 0 ]
|
||||
// where:
|
||||
//
|
||||
// M = \int_\Omega k u_h \cdot v_h d\Omega u_h, v_h \in R_h
|
||||
// B = -\int_\Omega \div u_h q_h d\Omega u_h \in R_h, q_h \in W_h
|
||||
BilinearForm *mVarf(new BilinearForm(R_space));
|
||||
MixedBilinearForm *bVarf(new MixedBilinearForm(R_space, W_space));
|
||||
|
||||
if (pa) { mVarf->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
mVarf->AddDomainIntegrator(new VectorFEMassIntegrator(k));
|
||||
mVarf->Assemble();
|
||||
if (!pa) { mVarf->Finalize(); }
|
||||
|
||||
if (pa) { bVarf->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
bVarf->AddDomainIntegrator(new VectorFEDivergenceIntegrator);
|
||||
bVarf->Assemble();
|
||||
if (!pa) { bVarf->Finalize(); }
|
||||
|
||||
BlockOperator darcyOp(block_offsets);
|
||||
|
||||
TransposeOperator *Bt = NULL;
|
||||
|
||||
if (pa)
|
||||
{
|
||||
Bt = new TransposeOperator(bVarf);
|
||||
|
||||
darcyOp.SetBlock(0,0, mVarf);
|
||||
darcyOp.SetBlock(0,1, Bt, -1.0);
|
||||
darcyOp.SetBlock(1,0, bVarf, -1.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
SparseMatrix &M(mVarf->SpMat());
|
||||
SparseMatrix &B(bVarf->SpMat());
|
||||
B *= -1.;
|
||||
Bt = new TransposeOperator(&B);
|
||||
|
||||
darcyOp.SetBlock(0,0, &M);
|
||||
darcyOp.SetBlock(0,1, Bt);
|
||||
darcyOp.SetBlock(1,0, &B);
|
||||
}
|
||||
|
||||
// 10. Construct the operators for preconditioner
|
||||
//
|
||||
// P = [ diag(M) 0 ]
|
||||
// [ 0 B diag(M)^-1 B^T ]
|
||||
//
|
||||
// Here we use Symmetric Gauss-Seidel to approximate the inverse of the
|
||||
// pressure Schur Complement
|
||||
SparseMatrix *MinvBt = NULL;
|
||||
Vector Md(mVarf->Height());
|
||||
|
||||
BlockDiagonalPreconditioner darcyPrec(block_offsets);
|
||||
Solver *invM, *invS;
|
||||
SparseMatrix *S = NULL;
|
||||
|
||||
if (pa)
|
||||
{
|
||||
mVarf->AssembleDiagonal(Md);
|
||||
auto Md_host = Md.HostRead();
|
||||
Vector invMd(mVarf->Height());
|
||||
for (int i=0; i<mVarf->Height(); ++i)
|
||||
{
|
||||
invMd(i) = 1.0 / Md_host[i];
|
||||
}
|
||||
|
||||
Vector BMBt_diag(bVarf->Height());
|
||||
bVarf->AssembleDiagonal_ADAt(invMd, BMBt_diag);
|
||||
|
||||
Array<int> ess_tdof_list; // empty
|
||||
|
||||
invM = new OperatorJacobiSmoother(Md, ess_tdof_list);
|
||||
invS = new OperatorJacobiSmoother(BMBt_diag, ess_tdof_list);
|
||||
}
|
||||
else
|
||||
{
|
||||
SparseMatrix &M(mVarf->SpMat());
|
||||
M.GetDiag(Md);
|
||||
Md.HostReadWrite();
|
||||
|
||||
SparseMatrix &B(bVarf->SpMat());
|
||||
MinvBt = Transpose(B);
|
||||
|
||||
for (int i = 0; i < Md.Size(); i++)
|
||||
{
|
||||
MinvBt->ScaleRow(i, 1./Md(i));
|
||||
}
|
||||
|
||||
S = Mult(B, *MinvBt);
|
||||
|
||||
invM = new DSmoother(M);
|
||||
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
invS = new GSSmoother(*S);
|
||||
#else
|
||||
invS = new UMFPackSolver(*S);
|
||||
#endif
|
||||
}
|
||||
|
||||
invM->iterative_mode = false;
|
||||
invS->iterative_mode = false;
|
||||
|
||||
darcyPrec.SetDiagonalBlock(0, invM);
|
||||
darcyPrec.SetDiagonalBlock(1, invS);
|
||||
|
||||
// 11. Solve the linear system with MINRES.
|
||||
// Check the norm of the unpreconditioned residual.
|
||||
int maxIter(10000);
|
||||
real_t rtol(1.e-10);
|
||||
real_t atol(1.e-10);
|
||||
|
||||
chrono.Clear();
|
||||
chrono.Start();
|
||||
MINRESSolver solver;
|
||||
solver.SetAbsTol(atol);
|
||||
solver.SetRelTol(rtol);
|
||||
solver.SetMaxIter(maxIter);
|
||||
solver.SetOperator(darcyOp);
|
||||
solver.SetPreconditioner(darcyPrec);
|
||||
solver.SetPrintLevel(1);
|
||||
x = 0.0;
|
||||
solver.Mult(rhs, x);
|
||||
if (device.IsEnabled()) { x.HostRead(); }
|
||||
chrono.Stop();
|
||||
|
||||
if (solver.GetConverged())
|
||||
{
|
||||
std::cout << "MINRES converged in " << solver.GetNumIterations()
|
||||
<< " iterations with a residual norm of "
|
||||
<< solver.GetFinalNorm() << ".\n";
|
||||
}
|
||||
else
|
||||
{
|
||||
std::cout << "MINRES did not converge in " << solver.GetNumIterations()
|
||||
<< " iterations. Residual norm is " << solver.GetFinalNorm()
|
||||
<< ".\n";
|
||||
}
|
||||
std::cout << "MINRES solver took " << chrono.RealTime() << "s.\n";
|
||||
|
||||
// 12. Create the grid functions u and p. Compute the L2 error norms.
|
||||
GridFunction u, p;
|
||||
u.MakeRef(R_space, x.GetBlock(0), 0);
|
||||
p.MakeRef(W_space, x.GetBlock(1), 0);
|
||||
|
||||
int order_quad = max(2, 2*order+1);
|
||||
const IntegrationRule *irs[Geometry::NumGeom];
|
||||
for (int i=0; i < Geometry::NumGeom; ++i)
|
||||
{
|
||||
irs[i] = &(IntRules.Get(i, order_quad));
|
||||
}
|
||||
|
||||
real_t err_u = u.ComputeL2Error(ucoeff, irs);
|
||||
real_t norm_u = ComputeLpNorm(2., ucoeff, *mesh, irs);
|
||||
real_t err_p = p.ComputeL2Error(pcoeff, irs);
|
||||
real_t norm_p = ComputeLpNorm(2., pcoeff, *mesh, irs);
|
||||
|
||||
std::cout << "|| u_h - u_ex || / || u_ex || = " << err_u / norm_u << "\n";
|
||||
std::cout << "|| p_h - p_ex || / || p_ex || = " << err_p / norm_p << "\n";
|
||||
|
||||
// 13. Save the mesh and the solution. This output can be viewed later using
|
||||
// GLVis: "glvis -m ex5.mesh -g sol_u.gf" or "glvis -m ex5.mesh -g
|
||||
// sol_p.gf".
|
||||
{
|
||||
ofstream mesh_ofs("ex5.mesh");
|
||||
mesh_ofs.precision(8);
|
||||
mesh->Print(mesh_ofs);
|
||||
|
||||
ofstream u_ofs("sol_u.gf");
|
||||
u_ofs.precision(8);
|
||||
u.Save(u_ofs);
|
||||
|
||||
ofstream p_ofs("sol_p.gf");
|
||||
p_ofs.precision(8);
|
||||
p.Save(p_ofs);
|
||||
}
|
||||
|
||||
// 14. Save data in the VisIt format
|
||||
VisItDataCollection visit_dc("Example5", mesh);
|
||||
visit_dc.RegisterField("velocity", &u);
|
||||
visit_dc.RegisterField("pressure", &p);
|
||||
visit_dc.Save();
|
||||
|
||||
// 15. Save data in the ParaView format
|
||||
ParaViewDataCollection paraview_dc("Example5", mesh);
|
||||
paraview_dc.SetPrefixPath("ParaView");
|
||||
paraview_dc.SetLevelsOfDetail(order);
|
||||
paraview_dc.SetCycle(0);
|
||||
paraview_dc.SetDataFormat(VTKFormat::BINARY);
|
||||
paraview_dc.SetHighOrderOutput(true);
|
||||
paraview_dc.SetTime(0.0); // set the time
|
||||
paraview_dc.RegisterField("velocity",&u);
|
||||
paraview_dc.RegisterField("pressure",&p);
|
||||
paraview_dc.Save();
|
||||
|
||||
// 16. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream u_sock(vishost, visport);
|
||||
u_sock.precision(8);
|
||||
u_sock << "solution\n" << *mesh << u << "window_title 'Velocity'" << endl;
|
||||
socketstream p_sock(vishost, visport);
|
||||
p_sock.precision(8);
|
||||
p_sock << "solution\n" << *mesh << p << "window_title 'Pressure'" << endl;
|
||||
}
|
||||
|
||||
// 17. Free the used memory.
|
||||
delete fform;
|
||||
delete gform;
|
||||
delete invM;
|
||||
delete invS;
|
||||
delete S;
|
||||
delete Bt;
|
||||
delete MinvBt;
|
||||
delete mVarf;
|
||||
delete bVarf;
|
||||
delete W_space;
|
||||
delete R_space;
|
||||
delete l2_coll;
|
||||
delete hdiv_coll;
|
||||
delete mesh;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
|
||||
void uFun_ex(const Vector & x, Vector & u)
|
||||
{
|
||||
real_t xi(x(0));
|
||||
real_t yi(x(1));
|
||||
real_t zi(0.0);
|
||||
if (x.Size() == 3)
|
||||
{
|
||||
zi = x(2);
|
||||
}
|
||||
|
||||
u(0) = - exp(xi)*sin(yi)*cos(zi);
|
||||
u(1) = - exp(xi)*cos(yi)*cos(zi);
|
||||
|
||||
if (x.Size() == 3)
|
||||
{
|
||||
u(2) = exp(xi)*sin(yi)*sin(zi);
|
||||
}
|
||||
}
|
||||
|
||||
// Change if needed
|
||||
real_t pFun_ex(const Vector & x)
|
||||
{
|
||||
real_t xi(x(0));
|
||||
real_t yi(x(1));
|
||||
real_t zi(0.0);
|
||||
|
||||
if (x.Size() == 3)
|
||||
{
|
||||
zi = x(2);
|
||||
}
|
||||
|
||||
return exp(xi)*sin(yi)*cos(zi);
|
||||
}
|
||||
|
||||
void fFun(const Vector & x, Vector & f)
|
||||
{
|
||||
f = 0.0;
|
||||
}
|
||||
|
||||
real_t gFun(const Vector & x)
|
||||
{
|
||||
if (x.Size() == 3)
|
||||
{
|
||||
return -pFun_ex(x);
|
||||
}
|
||||
else
|
||||
{
|
||||
return 0;
|
||||
}
|
||||
}
|
||||
|
||||
real_t f_natural(const Vector & x)
|
||||
{
|
||||
return (-pFun_ex(x));
|
||||
}
|
||||
@@ -153,7 +153,8 @@ int main(int argc, char *argv[])
|
||||
if (patchAssembly && reducedIntegration && !pa)
|
||||
{
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
MFEM_ABORT("Reduced integration is not supported in single precision.");
|
||||
cout << "Reduced integration is not supported in single precision.\n";
|
||||
return MFEM_SKIP_RETURN_VALUE;
|
||||
#endif
|
||||
|
||||
di->SetIntegrationMode(NonlinearFormIntegrator::Mode::PATCHWISE_REDUCED);
|
||||
|
||||
@@ -0,0 +1,401 @@
|
||||
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
//
|
||||
// ------------------------------------------------------------
|
||||
// NURBS Solenoidal Miniapp: Project solenoidal velocity
|
||||
// ------------------------------------------------------------
|
||||
//
|
||||
//
|
||||
// Compile with: make nurbs_solenoidal
|
||||
//
|
||||
// Sample runs: nurbs_solenoidal -m ../../data/square-nurbs.mesh -o 2
|
||||
// nurbs_solenoidal -m ../../data/cube-nurbs.mesh -o 2
|
||||
//
|
||||
// Description: This code projects a velocity field, and forces this field
|
||||
// to be solenoidal, viz. the divergence is zero. If the correct
|
||||
// discrete spaces are chosen the divergence is pointwise zero.
|
||||
//
|
||||
// This is achieved by solving a simple 2D/3D mixed Darcy problem
|
||||
// corresponding to the saddle point system (similar to ex5)
|
||||
//
|
||||
// u + grad p = u_ex
|
||||
// - div u = 0
|
||||
//
|
||||
// NURBS-based H(div) spaces only implemented for meshes
|
||||
// consisting of a single patch.
|
||||
//
|
||||
// Here, u_ex is the specified velocity field. If u_ex is
|
||||
// divergence free, we expect the pressure to converge to zero.
|
||||
// We discretize with H(div) and L2/H1 conforming elements.
|
||||
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
#include <algorithm>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
|
||||
void u_2d(const Vector & x, Vector & u)
|
||||
{
|
||||
real_t xi(x(0));
|
||||
real_t yi(x(1));
|
||||
|
||||
int p = 4;
|
||||
|
||||
u(0) = pow(xi,p + 1)*pow(yi,p );
|
||||
u(1) = -pow(xi,p )*pow(yi,p + 1);
|
||||
}
|
||||
|
||||
void u_3d(const Vector & x, Vector & u)
|
||||
{
|
||||
real_t xi(x(0));
|
||||
real_t yi(x(1));
|
||||
real_t zi(x(2));
|
||||
|
||||
int p = 4;
|
||||
|
||||
real_t cx = 3.0/4.0;
|
||||
real_t cy = 2.0/3.0;
|
||||
real_t cz = -cx - cy;
|
||||
|
||||
u(0) = cx*pow(xi,p + 1)*pow(yi,p )*pow(zi,p );
|
||||
u(1) = cy*pow(xi,p )*pow(yi,p + 1)*pow(zi,p );
|
||||
u(2) = cz*pow(xi,p )*pow(yi,p )*pow(zi,p + 1);
|
||||
}
|
||||
|
||||
// Define the analytical solution and forcing terms / boundary conditions
|
||||
void u_ex(const Vector & x, Vector & u)
|
||||
{
|
||||
if (x.Size() == 2)
|
||||
{
|
||||
u_2d(x, u);
|
||||
}
|
||||
else if (x.Size() == 3)
|
||||
{
|
||||
u_3d(x, u);
|
||||
}
|
||||
}
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
StopWatch chrono;
|
||||
|
||||
// 1. Parse command-line options.
|
||||
const char *mesh_file = "../../data/square-nurbs.mesh";
|
||||
int ref_levels = -1;
|
||||
int order = 1;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = 1;
|
||||
bool NURBS = true;
|
||||
bool div_free = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&ref_levels, "-r", "--refine",
|
||||
"Number of times to refine the mesh uniformly, -1 for auto.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&div_free, "-df", "--div-free", "-p","--proj",
|
||||
"Div-free or standard projection.");
|
||||
args.AddOption(&NURBS, "-n", "--nurbs", "-nn","--no-nurbs",
|
||||
"NURBS.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(mfem::out);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(mfem::out);
|
||||
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 3. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
|
||||
// the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
|
||||
// largest number that gives a final mesh with no more than 10,000
|
||||
// elements.
|
||||
{
|
||||
if (ref_levels < 0)
|
||||
{
|
||||
ref_levels =
|
||||
(int)floor(log(5000./mesh->GetNE())/log(2.)/dim);
|
||||
}
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 5. Define a finite element space on the mesh. Here we use the
|
||||
// Raviart-Thomas finite elements of the specified order.
|
||||
FiniteElementCollection *hdiv_coll = nullptr;
|
||||
FiniteElementCollection *l2_coll = nullptr;
|
||||
NURBSExtension *NURBSext = nullptr;
|
||||
|
||||
if (mesh->NURBSext&& NURBS)
|
||||
{
|
||||
hdiv_coll = new NURBS_HDivFECollection(order, dim);
|
||||
l2_coll = new NURBSFECollection(order);
|
||||
NURBSext = new NURBSExtension(mesh->NURBSext, order);
|
||||
mfem::out<<"Create NURBS fec and ext"<<std::endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
NURBS = false;
|
||||
hdiv_coll = new RT_FECollection(order, dim);
|
||||
l2_coll = new L2_FECollection(order, dim);
|
||||
mfem::out<<"Create Normal fec"<<std::endl;
|
||||
}
|
||||
|
||||
FiniteElementSpace *W_space = new FiniteElementSpace(mesh, NURBSext, l2_coll);
|
||||
FiniteElementSpace *R_space = new FiniteElementSpace(mesh,
|
||||
W_space->StealNURBSext(),
|
||||
hdiv_coll);
|
||||
|
||||
// 6. Define the BlockStructure of the problem, i.e. define the array of
|
||||
// offsets for each variable. The last component of the Array is the sum
|
||||
// of the dimensions of each block.
|
||||
Array<int> block_offsets(3); // number of variables + 1
|
||||
block_offsets[0] = 0;
|
||||
block_offsets[1] = R_space->GetVSize();
|
||||
block_offsets[2] = W_space->GetVSize();
|
||||
block_offsets.PartialSum();
|
||||
|
||||
mfem::out << "***********************************************************\n";
|
||||
mfem::out << "dim(R) = " << block_offsets[1] - block_offsets[0] << "\n";
|
||||
mfem::out << "dim(W) = " << block_offsets[2] - block_offsets[1] << "\n";
|
||||
mfem::out << "dim(R+W) = " << block_offsets.Last() << "\n";
|
||||
mfem::out << "***********************************************************\n";
|
||||
|
||||
// 7. Define the coefficients, analytical solution, and rhs of the PDE.
|
||||
ConstantCoefficient one(1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
VectorFunctionCoefficient ucoeff(dim, u_ex);
|
||||
|
||||
// 8. Allocate memory (x, rhs) for the analytical solution and the right hand
|
||||
// side. Define the GridFunction u,p for the finite element solution and
|
||||
// linear forms fform and gform for the right hand side. The data
|
||||
// allocated by x and rhs are passed as a reference to the grid functions
|
||||
// (u,p) and the linear forms (fform, gform).
|
||||
MemoryType mt = device.GetMemoryType();
|
||||
BlockVector x(block_offsets, mt), rhs(block_offsets, mt);
|
||||
rhs = 0.0;
|
||||
|
||||
LinearForm *fform(new LinearForm);
|
||||
fform->Update(R_space, rhs.GetBlock(0), 0);
|
||||
fform->AddDomainIntegrator(new VectorFEDomainLFIntegrator(ucoeff));
|
||||
fform->Assemble();
|
||||
fform->SyncAliasMemory(rhs);
|
||||
|
||||
// 9. Assemble the finite element matrices for the Darcy operator
|
||||
//
|
||||
// D = [ M B^T ]
|
||||
// [ B 0 ]
|
||||
// where:
|
||||
//
|
||||
// M = \int_\Omega k u_h \cdot v_h d\Omega u_h, v_h \in R_h
|
||||
// B = -\int_\Omega \div u_h q_h d\Omega u_h \in R_h, q_h \in W_h
|
||||
BilinearForm *mVarf(new BilinearForm(R_space));
|
||||
MixedBilinearForm *bVarf(new MixedBilinearForm(R_space, W_space));
|
||||
|
||||
mVarf->AddDomainIntegrator(new VectorFEMassIntegrator(one));
|
||||
mVarf->Assemble();
|
||||
mVarf->Finalize();
|
||||
|
||||
bVarf->AddDomainIntegrator(new VectorFEDivergenceIntegrator);
|
||||
bVarf->Assemble();
|
||||
bVarf->Finalize();
|
||||
|
||||
SparseMatrix &M(mVarf->SpMat());
|
||||
SparseMatrix &B(bVarf->SpMat());
|
||||
B *= -1.;
|
||||
TransposeOperator *Bt = new TransposeOperator(&B);
|
||||
|
||||
BlockOperator darcyOp(block_offsets);
|
||||
darcyOp.SetBlock(0,0, &M);
|
||||
if (div_free) { darcyOp.SetBlock(0,1, Bt); }
|
||||
if (div_free) { darcyOp.SetBlock(1,0, &B); }
|
||||
|
||||
// 10. Construct the operators for preconditioner
|
||||
//
|
||||
// P = [ diag(M) 0 ]
|
||||
// [ 0 B diag(M)^-1 B^T ]
|
||||
//
|
||||
// Here we use Symmetric Gauss-Seidel to approximate the inverse of the
|
||||
// pressure Schur Complement
|
||||
Vector Md(mVarf->Height());
|
||||
M.GetDiag(Md);
|
||||
Md.HostReadWrite();
|
||||
SparseMatrix *MinvBt = Transpose(B);
|
||||
for (int i = 0; i < Md.Size(); i++)
|
||||
{
|
||||
MinvBt->ScaleRow(i, 1./Md(i));
|
||||
}
|
||||
SparseMatrix *S = Mult(B, *MinvBt);
|
||||
Solver *invS;
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
invS = new GSSmoother(*S);
|
||||
#else
|
||||
invS = new UMFPackSolver(*S);
|
||||
#endif
|
||||
invS->iterative_mode = false;
|
||||
|
||||
Solver *invM = new GSSmoother(M);
|
||||
invM->iterative_mode = false;
|
||||
|
||||
BlockDiagonalPreconditioner darcyPrec(block_offsets);
|
||||
darcyPrec.SetDiagonalBlock(0, invM);
|
||||
darcyPrec.SetDiagonalBlock(1, invS);
|
||||
|
||||
// 11. Solve the linear system with MINRES.
|
||||
// Check the norm of the unpreconditioned residual.
|
||||
int maxIter(10000);
|
||||
real_t rtol(10*std::numeric_limits<real_t>::epsilon());
|
||||
real_t atol(10*std::numeric_limits<real_t>::epsilon());
|
||||
|
||||
chrono.Clear();
|
||||
chrono.Start();
|
||||
MINRESSolver solver;
|
||||
solver.SetAbsTol(atol);
|
||||
solver.SetRelTol(rtol);
|
||||
solver.SetMaxIter(maxIter);
|
||||
solver.SetOperator(darcyOp);
|
||||
solver.SetPreconditioner(darcyPrec);
|
||||
solver.SetPrintLevel(2);
|
||||
x = 0.0;
|
||||
solver.Mult(rhs, x);
|
||||
if (device.IsEnabled()) { x.HostRead(); }
|
||||
chrono.Stop();
|
||||
|
||||
if (solver.GetConverged())
|
||||
{
|
||||
mfem::out << "MINRES converged in " << solver.GetNumIterations()
|
||||
<< " iterations with a residual norm of "
|
||||
<< solver.GetFinalNorm() << ".\n";
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem::out << "MINRES did not converge in " << solver.GetNumIterations()
|
||||
<< " iterations. Residual norm is " << solver.GetFinalNorm()
|
||||
<< ".\n";
|
||||
}
|
||||
mfem::out << "MINRES solver took " << chrono.RealTime() << "s.\n";
|
||||
|
||||
// 12. Create the grid functions u and p
|
||||
GridFunction u, p, uu, vv, ww;
|
||||
u.MakeRef(R_space, x.GetBlock(0), 0);
|
||||
p.MakeRef(W_space, x.GetBlock(1), 0);
|
||||
|
||||
// 13. Save the mesh and the solution. This output can be viewed later using
|
||||
// GLVis: "glvis -m exsol.mesh -g sol_u.gf" or "glvis -m exsol.mesh -g
|
||||
// sol_p.gf".
|
||||
{
|
||||
ofstream mesh_ofs("exsol.mesh");
|
||||
mesh_ofs.precision(8);
|
||||
mesh->Print(mesh_ofs);
|
||||
|
||||
ofstream u_ofs("sol_u.gf");
|
||||
u_ofs.precision(8);
|
||||
u.Save(u_ofs);
|
||||
|
||||
ofstream p_ofs("sol_p.gf");
|
||||
p_ofs.precision(8);
|
||||
p.Save(p_ofs);
|
||||
}
|
||||
|
||||
// 14. Save data in the VisIt format
|
||||
VisItDataCollection visit_dc("Solenoidal", mesh);
|
||||
visit_dc.RegisterField("velocity", &u);
|
||||
visit_dc.RegisterField("pressure", &p);
|
||||
visit_dc.Save();
|
||||
|
||||
// 15. Save data in the ParaView format
|
||||
ParaViewDataCollection paraview_dc("Solenoidal", mesh);
|
||||
paraview_dc.SetPrefixPath("ParaView");
|
||||
paraview_dc.SetLevelsOfDetail(order);
|
||||
paraview_dc.SetCycle(0);
|
||||
paraview_dc.SetDataFormat(VTKFormat::BINARY);
|
||||
paraview_dc.SetHighOrderOutput(true);
|
||||
paraview_dc.SetTime(0.0); // set the time
|
||||
paraview_dc.RegisterField("velocity",&u);
|
||||
paraview_dc.RegisterField("pressure",&p);
|
||||
paraview_dc.Save();
|
||||
|
||||
// 16. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream u_sock(vishost, visport);
|
||||
u_sock.precision(8);
|
||||
u_sock << "solution\n" << *mesh << u << "window_title 'Velocity'" << endl;
|
||||
socketstream p_sock(vishost, visport);
|
||||
p_sock.precision(8);
|
||||
p_sock << "solution\n" << *mesh << p << "window_title 'Pressure'" << endl;
|
||||
}
|
||||
|
||||
// 17. Compute errors
|
||||
int order_quad = 2*order+2;
|
||||
const IntegrationRule *irs[Geometry::NumGeom];
|
||||
for (int i=0; i < Geometry::NumGeom; ++i)
|
||||
{
|
||||
irs[i] = &(IntRules.Get(i, order_quad));
|
||||
}
|
||||
|
||||
real_t err_u = u.ComputeL2Error(ucoeff, irs);
|
||||
real_t err_p = p.ComputeL2Error(zero, irs);
|
||||
real_t err_div = u.ComputeDivError(&zero, irs);
|
||||
|
||||
mfem::out << "|| u_h - u_ex || = " << err_u << "\n";
|
||||
mfem::out << "|| div u_h - div u_ex || = " << err_div << "\n";
|
||||
mfem::out << "|| p_h - p_ex || = " << err_p << "\n";
|
||||
|
||||
// 18. Free the used memory.
|
||||
delete fform;
|
||||
delete invM;
|
||||
delete invS;
|
||||
delete S;
|
||||
delete Bt;
|
||||
delete MinvBt;
|
||||
delete mVarf;
|
||||
delete bVarf;
|
||||
delete W_space;
|
||||
delete R_space;
|
||||
delete l2_coll;
|
||||
delete hdiv_coll;
|
||||
delete mesh;
|
||||
|
||||
if (err_div > 1e4*std::numeric_limits<real_t>::epsilon() )
|
||||
{
|
||||
mfem::out << "std::numeric_limits<real_t>::epsilon() = "
|
||||
<< std::numeric_limits<real_t>::epsilon() << "\n";
|
||||
mfem_error("Divergence error larger than expected");
|
||||
}
|
||||
|
||||
return 0;
|
||||
}
|
||||
@@ -56,6 +56,7 @@ set(UNIT_TESTS_SRCS
|
||||
mesh/test_submesh.cpp
|
||||
mesh/test_vtu.cpp
|
||||
mesh/test_nurbs.cpp
|
||||
mesh/test_exodus_writer.cpp
|
||||
fem/test_1d_bilininteg.cpp
|
||||
fem/test_2d_bilininteg.cpp
|
||||
fem/test_3d_bilininteg.cpp
|
||||
@@ -85,6 +86,7 @@ set(UNIT_TESTS_SRCS
|
||||
fem/test_get_value.cpp
|
||||
fem/test_getderivative.cpp
|
||||
fem/test_getgradient.cpp
|
||||
fem/test_gslib.cpp
|
||||
fem/test_intrules.cpp
|
||||
fem/test_intruletypes.cpp
|
||||
fem/test_inversetransform.cpp
|
||||
|
||||
@@ -369,6 +369,124 @@ TEST_CASE("GSLIBInterpolateL2ElementBoundary",
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
// Custom interpolation procedure with gslib
|
||||
TEST_CASE("GSLIBCustomInterpolation",
|
||||
"[GSLIBCustomInterpolation][Parallel][GSLIB]")
|
||||
{
|
||||
int myid;
|
||||
MPI_Comm_rank(MPI_COMM_WORLD, &myid);
|
||||
|
||||
int dim = GENERATE(2, 3);
|
||||
bool simplex = GENERATE(true, false);
|
||||
|
||||
CAPTURE(dim, simplex);
|
||||
|
||||
int nex = 4;
|
||||
int mesh_order = 2;
|
||||
Mesh mesh;
|
||||
if (dim == 2)
|
||||
{
|
||||
Element::Type type = simplex ? Element::TRIANGLE : Element::QUADRILATERAL;
|
||||
mesh = Mesh::MakeCartesian2D(nex, nex, type);
|
||||
}
|
||||
else
|
||||
{
|
||||
Element::Type type = simplex ? Element::TETRAHEDRON : Element::HEXAHEDRON;
|
||||
mesh = Mesh::MakeCartesian3D(nex, nex, nex, type);
|
||||
}
|
||||
|
||||
mesh.SetCurvature(mesh_order);
|
||||
ParMesh pmesh(MPI_COMM_WORLD, mesh);
|
||||
|
||||
// f(x,y,z) = x^2 + y^2 + z^2
|
||||
auto func = [](const Vector &x)
|
||||
{
|
||||
const int dim = x.Size();
|
||||
double res = 0.0;
|
||||
for (int d = 0; d < dim; d++) { res += std::pow(x(d), 2); }
|
||||
return res;
|
||||
};
|
||||
|
||||
// \nabla f(x,y,z) = [2*x,2*y,2*z]
|
||||
auto func_grad = [](const Vector &x, Vector &p)
|
||||
{
|
||||
const int dim = x.Size();
|
||||
p.SetSize(dim);
|
||||
for (int d = 0; d < dim; d++) { p(d) = 2.0*x(d); }
|
||||
};
|
||||
|
||||
// Set GridFunction to be interpolated
|
||||
int func_order = 3;
|
||||
H1_FECollection c_fec(func_order, dim);
|
||||
FiniteElementSpace c_fespace(&pmesh, &c_fec, 1);
|
||||
GridFunction field_vals(&c_fespace);
|
||||
|
||||
FunctionCoefficient f(func);
|
||||
field_vals.ProjectCoefficient(f);
|
||||
|
||||
// Generate randomized points in [0, 1]^D. Assume ordering by VDIM.
|
||||
int npt = 101;
|
||||
Vector xyz(npt*dim);
|
||||
xyz.Randomize(myid + 1);
|
||||
|
||||
// Find points on the ParMesh
|
||||
Vector interp_vals(npt);
|
||||
FindPointsGSLIB finder;
|
||||
finder.Setup(pmesh);
|
||||
finder.FindPoints(xyz, Ordering::byVDIM);
|
||||
|
||||
/** Interpolate gradient using custom interpolation procedure. */
|
||||
// We first send information to MPI ranks that own the element corresponding
|
||||
// to each point.
|
||||
Array<unsigned int> recv_elem, recv_code;
|
||||
Vector recv_rst;
|
||||
finder.DistributePointInfoToOwningMPIRanks(recv_elem, recv_rst, recv_code);
|
||||
int npt_recv = recv_elem.Size();
|
||||
// Compute gradient locally
|
||||
Vector grad(npt_recv*dim);
|
||||
for (int i = 0; i < npt_recv; i++)
|
||||
{
|
||||
const int e = recv_elem[i];
|
||||
|
||||
IntegrationPoint ip;
|
||||
if (dim == 2)
|
||||
{
|
||||
ip.Set2(recv_rst(dim*i + 0),recv_rst(dim*i + 1));
|
||||
}
|
||||
else
|
||||
{
|
||||
ip.Set3(recv_rst(dim*i + 0),recv_rst(dim*i + 1),
|
||||
recv_rst(dim*i + 2));
|
||||
}
|
||||
ElementTransformation *Tr = c_fespace.GetElementTransformation(e);
|
||||
Tr->SetIntPoint(&ip);
|
||||
|
||||
Vector gradloc(grad.GetData()+i*dim,dim);
|
||||
field_vals.GetGradient(*Tr, gradloc);
|
||||
}
|
||||
|
||||
// Send the computed gradient back to the ranks that requested it.
|
||||
Vector recv_grad;
|
||||
finder.DistributeInterpolatedValues(grad, dim, Ordering::byVDIM, recv_grad);
|
||||
|
||||
// Check if the received gradient matched analytic gradient.
|
||||
for (int i = 0; i < npt && myid == 0; i++)
|
||||
{
|
||||
Vector x(xyz.GetData()+i*dim,dim);
|
||||
Vector grad_exact(dim);
|
||||
func_grad(x, grad_exact);
|
||||
|
||||
Vector recv_grad_i(recv_grad.GetData()+i*dim,dim);
|
||||
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
REQUIRE(grad_exact(d) == Approx(recv_grad(i*dim + d)));
|
||||
}
|
||||
}
|
||||
|
||||
finder.FreeData();
|
||||
}
|
||||
|
||||
TEST_CASE("GSLIBGSOP", "[GSLIBGSOP][Parallel][GSLIB]")
|
||||
{
|
||||
int myid;
|
||||
@@ -434,7 +552,7 @@ TEST_CASE("GSLIBGSOP", "[GSLIBGSOP][Parallel][GSLIB]")
|
||||
REQUIRE(vals(i) < 0);
|
||||
}
|
||||
}
|
||||
#endif
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
} //namespace_gslib
|
||||
#endif
|
||||
|
||||
@@ -0,0 +1,298 @@
|
||||
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "unit_tests.hpp"
|
||||
#include "mfem.hpp"
|
||||
|
||||
using namespace mfem;
|
||||
namespace hptransfer_test
|
||||
{
|
||||
|
||||
int order=1;
|
||||
|
||||
double u(const Vector & x)
|
||||
{
|
||||
return pow(x.Sum(),order);
|
||||
}
|
||||
|
||||
void vecu(const Vector & x, Vector & U)
|
||||
{
|
||||
for (int i = 0; i<x.Size(); i++)
|
||||
{
|
||||
U[i] = pow(x[i], order);
|
||||
}
|
||||
}
|
||||
|
||||
void RandomPRefinement(FiniteElementSpace & fes)
|
||||
{
|
||||
Mesh *mesh = fes.GetMesh();
|
||||
for (int i = 0; i < mesh->GetNE(); i++)
|
||||
{
|
||||
if ((double) rand() / RAND_MAX < 0.5)
|
||||
{
|
||||
const int eorder = fes.GetElementOrder(i);
|
||||
fes.SetElementOrder(i,eorder+1);
|
||||
}
|
||||
}
|
||||
fes.Update(false);
|
||||
}
|
||||
|
||||
/* This function randomly selects elements to be de-refined and sets the
|
||||
order of the elements that share the same parent to their minimum */
|
||||
void PreprocessRandomDerefinement(FiniteElementSpace & fes, Array<int> &drefs,
|
||||
double prob=0.5)
|
||||
{
|
||||
Mesh * mesh = fes.GetMesh();
|
||||
const Table & dereftable = mesh->ncmesh->GetDerefinementTable();
|
||||
int dref = dereftable.Size();
|
||||
for (int i = 0; i < dref; i++)
|
||||
{
|
||||
if ((double) rand() / RAND_MAX < prob)
|
||||
{
|
||||
drefs.Append(i);
|
||||
}
|
||||
}
|
||||
|
||||
// Go through the possible derefinements and set the orders to minimum
|
||||
Array<int> row;
|
||||
for (int i = 0; i<drefs.Size(); i++)
|
||||
{
|
||||
dereftable.GetRow(drefs[i], row);
|
||||
int minorder = 100;
|
||||
for (int j = 0; j<row.Size(); j++)
|
||||
{
|
||||
minorder = std::min(minorder, fes.GetElementOrder(row[j]));
|
||||
}
|
||||
// set the min order
|
||||
for (int j = 0; j<row.Size(); j++)
|
||||
{
|
||||
fes.SetElementOrder(row[j],minorder);
|
||||
}
|
||||
}
|
||||
fes.Update(false);
|
||||
}
|
||||
|
||||
void Derefine(Mesh &mesh, const Array<int> &drefs)
|
||||
{
|
||||
const Table & dereftable = mesh.ncmesh->GetDerefinementTable();
|
||||
|
||||
Array<int> row;
|
||||
Vector errors(mesh.GetNE()); errors = infinity();
|
||||
for (int i = 0; i<drefs.Size(); i++)
|
||||
{
|
||||
dereftable.GetRow(drefs[i], row);
|
||||
for (int j = 0; j<row.Size(); j++)
|
||||
{
|
||||
errors[row[j]] = 0.0;
|
||||
}
|
||||
}
|
||||
mesh.DerefineByError(errors,1.0);
|
||||
}
|
||||
|
||||
enum class Space {H1, L2, VectorH1, VectorL2};
|
||||
|
||||
TEST_CASE("hpTransfer", "[hpTransfer]")
|
||||
{
|
||||
auto space = GENERATE(Space::H1, Space::L2, Space::VectorH1, Space::VectorL2);
|
||||
int dim = GENERATE(2,3);
|
||||
auto simplex = GENERATE(false, true);
|
||||
order = GENERATE(1,2);
|
||||
auto relax_conformity = GENERATE(false, true);
|
||||
|
||||
/* No need to distinguish between relaxed and full conformity in the DG case*/
|
||||
if ((space == Space::L2 || space == Space::VectorL2) && relax_conformity) { return; }
|
||||
|
||||
constexpr int ne = 3;
|
||||
|
||||
CAPTURE(space, dim, simplex, order, relax_conformity);
|
||||
|
||||
Mesh mesh;
|
||||
if (dim == 2)
|
||||
{
|
||||
Element::Type type = simplex ? Element::TRIANGLE : Element::QUADRILATERAL;
|
||||
mesh = Mesh::MakeCartesian2D(ne, ne, type, 1, 1.0, 1.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
Element::Type type = simplex ? Element::TETRAHEDRON : Element::HEXAHEDRON;
|
||||
mesh = Mesh::MakeCartesian3D(ne, ne, ne, type, 1.0, 1.0, 1.0);
|
||||
}
|
||||
mesh.EnsureNCMesh(true);
|
||||
|
||||
// 1. Set up initial state by randomly h- and p- refinement
|
||||
mesh.RandomRefinement(0.5);
|
||||
|
||||
FiniteElementCollection * fec = nullptr;
|
||||
if (space == Space::H1 || space == Space::VectorH1)
|
||||
{
|
||||
fec = new H1_FECollection(order, dim);
|
||||
}
|
||||
else
|
||||
{
|
||||
fec = new L2_FECollection(order, dim);
|
||||
}
|
||||
|
||||
int dimc = (space<=Space::L2) ? 1 : dim;
|
||||
FiniteElementSpace fes(&mesh, fec, dimc);
|
||||
fes.SetRelaxedHpConformity(relax_conformity);
|
||||
RandomPRefinement(fes);
|
||||
|
||||
// 2. Set up a GridFunction on the initial hp-mesh
|
||||
FunctionCoefficient f(u);
|
||||
VectorFunctionCoefficient vf(dim,vecu);
|
||||
GridFunction gf(&fes); gf = 0.0;
|
||||
if (space<=Space::L2)
|
||||
{
|
||||
gf.ProjectCoefficient(f);
|
||||
}
|
||||
else
|
||||
{
|
||||
gf.ProjectCoefficient(vf);
|
||||
}
|
||||
|
||||
// 3. Randomly h-refine the mesh and transfer the GridFunction
|
||||
mesh.RandomRefinement(0.5);
|
||||
fes.Update();
|
||||
gf.Update();
|
||||
|
||||
GridFunction err_gf(&fes);
|
||||
if (space<=Space::L2)
|
||||
{
|
||||
err_gf.ProjectCoefficient(f);
|
||||
}
|
||||
else
|
||||
{
|
||||
err_gf.ProjectCoefficient(vf);
|
||||
}
|
||||
err_gf-= gf;
|
||||
|
||||
if (fes.GetHpRestrictionMatrix())
|
||||
{
|
||||
Vector tmp0(fes.GetHpRestrictionMatrix()->Height());
|
||||
fes.GetHpRestrictionMatrix()->Mult(err_gf,tmp0);
|
||||
fes.GetProlongationMatrix()->Mult(tmp0,err_gf);
|
||||
}
|
||||
|
||||
// 3a. Check if the prolonged GridFunction to the h-refined
|
||||
// mesh exactly reproduces the polynomial GridFunction
|
||||
REQUIRE(err_gf.Norml2() < 1e-11);
|
||||
|
||||
// 4. Randomly p-refine the mesh and transfer the GridFunction
|
||||
Mesh cmesh(mesh);
|
||||
FiniteElementSpace cfes(&cmesh, fec, dimc);
|
||||
cfes.SetRelaxedHpConformity(relax_conformity);
|
||||
for (int i = 0; i<cmesh.GetNE(); i++)
|
||||
{
|
||||
cfes.SetElementOrder(i,fes.GetElementOrder(i));
|
||||
}
|
||||
cfes.Update(false);
|
||||
|
||||
RandomPRefinement(fes);
|
||||
PRefinementTransferOperator T(cfes, fes);
|
||||
|
||||
GridFunction hpgf(&fes);
|
||||
T.Mult(gf,hpgf);
|
||||
|
||||
err_gf.SetSpace(&fes);
|
||||
if (space<=Space::L2)
|
||||
{
|
||||
err_gf.ProjectCoefficient(f);
|
||||
}
|
||||
else
|
||||
{
|
||||
err_gf.ProjectCoefficient(vf);
|
||||
}
|
||||
err_gf-= hpgf;
|
||||
|
||||
if (fes.GetHpRestrictionMatrix())
|
||||
{
|
||||
Vector tmp(fes.GetHpRestrictionMatrix()->Height());
|
||||
fes.GetHpRestrictionMatrix()->Mult(err_gf,tmp);
|
||||
fes.GetProlongationMatrix()->Mult(tmp,err_gf);
|
||||
}
|
||||
|
||||
// 4a. Check if the prolonged GridFunction to the p-refined
|
||||
// mesh exactly reproduces the polynomial GridFunction
|
||||
REQUIRE(err_gf.Norml2() < 1e-11);
|
||||
|
||||
// 5. Before randomly de-refining the mesh ensure that the elements
|
||||
// (of the same parent) that are going to be de-refined
|
||||
// have the same order
|
||||
Mesh fmesh(mesh);
|
||||
FiniteElementSpace ffes(&fmesh, fec, dimc);
|
||||
ffes.SetRelaxedHpConformity(relax_conformity);
|
||||
for (int i = 0; i<fmesh.GetNE(); i++)
|
||||
{
|
||||
ffes.SetElementOrder(i,fes.GetElementOrder(i));
|
||||
}
|
||||
ffes.Update(false);
|
||||
|
||||
Array<int> drefs;
|
||||
// lower the order of the children to their minimum
|
||||
PreprocessRandomDerefinement(fes, drefs);
|
||||
PRefinementTransferOperator T2(ffes, fes);
|
||||
gf.SetSpace(&fes);
|
||||
T2.Mult(hpgf, gf);
|
||||
|
||||
err_gf.SetSpace(&fes);
|
||||
if (space<=Space::L2)
|
||||
{
|
||||
err_gf.ProjectCoefficient(f);
|
||||
}
|
||||
else
|
||||
{
|
||||
err_gf.ProjectCoefficient(vf);
|
||||
}
|
||||
err_gf-= gf;
|
||||
|
||||
if (fes.GetHpRestrictionMatrix())
|
||||
{
|
||||
Vector temp(fes.GetHpRestrictionMatrix()->Height());
|
||||
fes.GetHpRestrictionMatrix()->Mult(err_gf,temp);
|
||||
fes.GetProlongationMatrix()->Mult(temp,err_gf);
|
||||
}
|
||||
|
||||
// 5a. Check if the restricted GridFunction to the p-derefined
|
||||
// mesh exactly reproduces the polynomial GridFunction
|
||||
REQUIRE(err_gf.Norml2() < 1e-11);
|
||||
|
||||
// 6. De-refine the mesh and transfer the GridFunction
|
||||
Derefine(mesh,drefs);
|
||||
|
||||
fes.Update();
|
||||
gf.Update();
|
||||
|
||||
err_gf.SetSpace(&fes); err_gf = 0.0;
|
||||
if (space<=Space::L2)
|
||||
{
|
||||
err_gf.ProjectCoefficient(f);
|
||||
}
|
||||
else
|
||||
{
|
||||
err_gf.ProjectCoefficient(vf);
|
||||
}
|
||||
|
||||
err_gf-= gf;
|
||||
|
||||
if (fes.GetHpRestrictionMatrix())
|
||||
{
|
||||
Vector temp(fes.GetHpRestrictionMatrix()->Height());
|
||||
fes.GetHpRestrictionMatrix()->Mult(err_gf,temp);
|
||||
fes.GetProlongationMatrix()->Mult(temp,err_gf);
|
||||
}
|
||||
|
||||
// 6a. Check if the restricted GridFunction to the de-refined
|
||||
// mesh exactly reproduces the polynomial GridFunction
|
||||
REQUIRE(err_gf.Norml2() < 1e-11);
|
||||
delete fec;
|
||||
}
|
||||
|
||||
}
|
||||
@@ -18,12 +18,13 @@
|
||||
#include <unistd.h>
|
||||
#include <stdio.h>
|
||||
#include "umpire/Umpire.hpp"
|
||||
#include <umpire/strategy/QuickPool.hpp>
|
||||
|
||||
#ifdef MFEM_USE_CUDA
|
||||
#include <cuda.h>
|
||||
constexpr const char * device_name = "cuda";
|
||||
#elif defined(MFEM_USE_HIP)
|
||||
constexpr const char * device_name = "raja-hip";
|
||||
constexpr const char * device_name = "hip";
|
||||
#endif
|
||||
|
||||
using namespace mfem;
|
||||
@@ -45,10 +46,12 @@ static bool is_pinned_host(void * h_p)
|
||||
unsigned flags;
|
||||
#ifdef MFEM_USE_CUDA
|
||||
auto err = cudaHostGetFlags(&flags, h_p);
|
||||
cudaGetLastError(); // also resets last error
|
||||
if (err == cudaSuccess) { return true; }
|
||||
else if (err == cudaErrorInvalidValue) { return false; }
|
||||
#elif defined(MFEM_USE_HIP)
|
||||
auto err = hipHostGetFlags(&flags, h_p);
|
||||
hipGetLastError(); // also resets last error
|
||||
if (err == hipSuccess) { return true; }
|
||||
else if (err == hipErrorInvalidValue) { return false; }
|
||||
#endif
|
||||
|
||||
@@ -0,0 +1,129 @@
|
||||
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include "unit_tests.hpp"
|
||||
|
||||
using namespace mfem;
|
||||
|
||||
#ifdef MFEM_USE_NETCDF
|
||||
static void CompareMeshes(Mesh &mesh1, Mesh &mesh2)
|
||||
{
|
||||
REQUIRE(mesh1.GetNE() == mesh2.GetNE());
|
||||
REQUIRE(mesh1.GetNV() == mesh2.GetNV());
|
||||
REQUIRE(mesh1.GetNBE() == mesh2.GetNBE());
|
||||
REQUIRE(mesh1.GetNFaces() == mesh2.GetNFaces());
|
||||
|
||||
const FiniteElementSpace *fespace1 = mesh1.GetNodalFESpace();
|
||||
const FiniteElementSpace *fespace2 = mesh2.GetNodalFESpace();
|
||||
|
||||
// Check elements.
|
||||
Array<int> element_faces1, element_faces2;
|
||||
Array<int> element_orient1, element_orient2;
|
||||
Array<int> dofs1, dofs2;
|
||||
|
||||
for (int ielement = 0; ielement < mesh1.GetNE(); ielement++)
|
||||
{
|
||||
int attr1 = mesh1.GetAttribute(ielement);
|
||||
int attr2 = mesh2.GetAttribute(ielement);
|
||||
|
||||
REQUIRE(attr1 == attr2);
|
||||
|
||||
Element::Type type1 = mesh1.GetElementType(ielement);
|
||||
Element::Type type2 = mesh2.GetElementType(ielement);
|
||||
|
||||
REQUIRE(type1 == type2);
|
||||
|
||||
mesh1.GetElementFaces(ielement, element_faces1, element_orient1);
|
||||
mesh2.GetElementFaces(ielement, element_faces2, element_orient2);
|
||||
|
||||
REQUIRE(element_faces1 == element_faces2);
|
||||
REQUIRE(element_orient1 == element_orient2);
|
||||
|
||||
if (fespace1 && fespace2)
|
||||
{
|
||||
fespace1->GetElementDofs(ielement, dofs1);
|
||||
fespace2->GetElementDofs(ielement, dofs2);
|
||||
}
|
||||
else
|
||||
{
|
||||
mesh1.GetElementVertices(ielement, dofs1);
|
||||
mesh2.GetElementVertices(ielement, dofs2);
|
||||
}
|
||||
|
||||
REQUIRE(dofs1 == dofs2);
|
||||
}
|
||||
|
||||
// Check bdr elements.
|
||||
for (int ibdr_element = 0; ibdr_element < mesh1.GetNBE(); ibdr_element++)
|
||||
{
|
||||
int attr1 = mesh1.GetBdrAttribute(ibdr_element);
|
||||
int attr2 = mesh2.GetBdrAttribute(ibdr_element);
|
||||
|
||||
REQUIRE(attr1 == attr2);
|
||||
|
||||
Element::Type type1 = mesh1.GetBdrElementType(ibdr_element);
|
||||
Element::Type type2 = mesh2.GetBdrElementType(ibdr_element);
|
||||
|
||||
REQUIRE(type1 == type2);
|
||||
|
||||
int face_index1 = mesh1.GetBdrElementFaceIndex(ibdr_element);
|
||||
int face_index2 = mesh2.GetBdrElementFaceIndex(ibdr_element);
|
||||
|
||||
REQUIRE(face_index1 == face_index2);
|
||||
}
|
||||
|
||||
// Check face vertices.
|
||||
Array<int> face_vertices1, face_vertices2;
|
||||
for (int iface_index = 0; iface_index < mesh1.GetNFaces(); iface_index++)
|
||||
{
|
||||
mesh1.GetFaceVertices(iface_index, face_vertices1);
|
||||
mesh2.GetFaceVertices(iface_index, face_vertices2);
|
||||
|
||||
REQUIRE(face_vertices1 == face_vertices2);
|
||||
}
|
||||
}
|
||||
#endif
|
||||
|
||||
TEST_CASE("ExodusII Writer", "[Mesh][ExodusII][MFEMData]")
|
||||
{
|
||||
#ifdef MFEM_USE_NETCDF
|
||||
// NB: wedge, pyramid and mixed mesh tests require the ExodusII reader PR
|
||||
// to be merged. Pyramid14 tests require the pyramid-dev branch to be merged.
|
||||
auto filename = GENERATE("simple-cube-hex8.e",
|
||||
"simple-cube-hex27.e",
|
||||
"simple-cube-tet4.e",
|
||||
"simple-cube-tet10.e"//,
|
||||
// "simple-cube-wedge6.e",
|
||||
// "simple-cube-wedge18.e",
|
||||
// "simple-cube-pyramid5.e",
|
||||
// "simple-cube-pyramid14.e",
|
||||
// "simple-cube-multi-element-order1.e",
|
||||
// "simple-cube-multi-element-order2.e"
|
||||
);
|
||||
|
||||
// Load Exodus II mesh from file. NB: do NOT refine as this changes vertex ordering!
|
||||
Mesh original_mesh = Mesh::LoadFromFile(mfem_data_dir + "/exodusii/" + filename,
|
||||
0, 0, true);
|
||||
|
||||
// Write generated Exodus II mesh to file.
|
||||
std::string filename_generated = "generated-mesh.e";
|
||||
original_mesh.PrintExodusII(filename_generated);
|
||||
|
||||
// Load generated Exodus II mesh.
|
||||
Mesh generated_mesh = Mesh::LoadFromFile(filename_generated, 0, 0, true);
|
||||
|
||||
CompareMeshes(original_mesh, generated_mesh);
|
||||
|
||||
// Remove temporary file.
|
||||
REQUIRE(remove(filename_generated.c_str()) == 0);
|
||||
#endif
|
||||
}
|
||||
Reference in New Issue
Block a user