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343 Commits
Author SHA1 Message Date
Will Pazner ffce41001e Suppress Doxygen warnings 2024-06-27 09:27:58 -07:00
Will Pazner 5724e4f274 Improve kernel dispatch mechanism and workaround MSVC issues
Introduce some workarounds for MSVC:

- Need to expand variadic macros explicitly
- Adjacent parameter packs in function templates not supported; use nested
  structs instead
- Can't use default parameters in template definition if not present in
  declaration

Some improvements to the kernel dispatch:

- Run is now a static member function (don't need to call Get)
- DIM is not treated differently from the other parameters
2024-06-27 09:27:58 -07:00
Will Pazner e189b0b0f0 Fix deprecated implicit cast warning 2024-06-26 16:12:42 -07:00
Will Pazner 11badb5d2f Workaround for gcc bug with variadic template parameter packs 2024-06-26 16:09:07 -07:00
Will Pazner 39e3854585 Remove extra semicolon, include <cstddef> 2024-06-26 15:57:55 -07:00
Will Pazner c271ac1eda Fix MFEM_REGISTER_KERNELS macro warnings
Fixes the warnings:

must specify at least one argument for '...' parameter of variadic macro
[-Werror,-Wgnu-zero-variadic-macro-arguments]

and

extra ';' inside a class [-Werror,-Wextra-semi]
2024-06-26 15:27:29 -07:00
Will Pazner ed8ce36e96 Use regular comments instead of Doxygen for MFEM_REGISTER_KERNELS macro 2024-06-26 15:26:46 -07:00
john bowen 66c71dd4f2 Merge branch 'dispatch-map-v2' into dispatch-map 2024-06-26 14:42:27 -07:00
Will Pazner 635c487665 Simplify kernel dispatch macro 2024-06-26 11:42:24 -07:00
Will Pazner 90c995f0e6 Add mechanism for reporting kernel fallbacks 2024-06-26 11:25:47 -07:00
Will Pazner 9d3ce2c394 Add headers to fem/CMakeLists.txt 2024-06-26 11:25:04 -07:00
Will Pazner 185b2bba58 Kernel dispatch for non-tensor eval kernels 2024-06-25 22:12:54 -07:00
Will Pazner 93e6be67d3 Doxygen documentation for dispatch map 2024-06-25 15:24:17 -07:00
Will Pazner 7a4ab004c2 Add Det kernel specializations 2024-06-25 15:11:11 -07:00
Will Pazner 467cc941f3 Fix to QuadratureInterpolator in H(div) linear solver 2024-06-25 15:06:22 -07:00
Will Pazner 5a5d9cfe77 Split QuadratureInterpolator kernel instantiations into multiple translation units 2024-06-25 15:05:48 -07:00
Will Pazner 998b531fe5 Rework NBZ kernel dispatch, add Det QuadratureInterpolator kernels 2024-06-25 14:39:00 -07:00
Will Pazner c33327f234 Bring back NBZ in QuadratureInterpolator 2024-06-25 13:29:56 -07:00
Will Pazner e60145110d QuadratureInterpolator kernel specializations 2024-06-25 13:03:04 -07:00
Will Pazner 5f04684f17 Bring back NBZ in mass and diffusion kernels 2024-06-25 12:48:48 -07:00
Will Pazner a3065a05dc Rename MFEM_DECLARE_KERNELS to MFEM_REGISTER_KERNELS 2024-06-25 11:06:21 -07:00
Will Pazner ede448d783 Unify kernel dispatch with and without fallback parameters 2024-06-25 11:05:36 -07:00
Will Pazner 2e0df87cd6 Use dispatch mechanism in QuadratureInterpolator 2024-06-24 21:57:07 -07:00
Will Pazner 5ec854e9e4 Rearrange parameters in kernel dispatch 2024-06-24 21:48:07 -07:00
Will Pazner 842c68b0b5 Proof of concept for dispatch with QuadratureInterpolator 2024-06-24 16:38:43 -07:00
Will Pazner c3806304d4 More simplifications 2024-06-24 15:50:12 -07:00
Will Pazner a092f9cad0 Small adjustments 2024-06-24 14:38:41 -07:00
Will Pazner 17eb65d619 Some suggestions for dispatch map 2024-06-24 13:47:01 -07:00
john bowen 75567ae1ef remove NBZ as a kernel parameter 2024-06-21 11:22:07 -07:00
john bowen c18e27aeac Merge branch 'master' into dispatch-map 2024-06-20 10:06:08 -07:00
john bowen 3d84777b69 Simplify kernel specialization class boilerplate using a macro. 2024-06-20 10:03:05 -07:00
Tzanio Kolev c240df5fbe Merge pull request #4049 from mfem/3942-add-test-for-sundials-usemfemmasslinearsolver
Refactored `ARKStepSolver` to use `ExplicitMult` when either `UseMFEMMassLinearSolver` or `UseSundialsMassLinearSolver` are called.
2024-06-19 00:43:11 +01:00
Tzanio Kolev 950198a3f2 Merge pull request #4354 from mfem/small-bugfixes-2024-06-12
Minor bugfixes
2024-06-19 00:42:34 +01:00
Tzanio Kolev d808463114 Updated CHANGELOG 2024-06-15 14:39:59 -07:00
Tzanio Kolev 5447bcf8a9 Merge branch 'master' into 3942-add-test-for-sundials-usemfemmasslinearsolver 2024-06-15 22:37:29 +01:00
Edward PalmerEdward PalmerTzanio KolevStowell, Mark L <stowell1@llnl.gov>
7ace2dedf1 Exodus II Writer (#4208)
* Added WriteExodusII method to the Mesh; added exodus_writer cpp file; updated cmakelists.

* Added test_exodus_writer file for Exodus II writer unit tests.

* Setting title, num_dim, num_elem.

* Added function to generate Exodus II element blocks from MFEM mesh.

* Added a function to generate sideset information from an MFEM mesh.

* Added function to get num_nodes for an MFEM mesh.

* Writing coordinates to file.

* Rewritten GenerateExodusIIElementBlocksFromMesh to make use of element attributes.

* Now defining some element block parameters.

* Added WriteNodeConnectivityForBlock; fixed naming of one of the variables.

* Fixed naming for number of nodes per element variable.

* Added function to write sideset boundary IDs to file.

* Added function to write block IDs.

* Added incomplete functiono "GenerateExodusIISidesetsFromMesh" which generates key information about each boundary which can then be written to the file.

* Now also writing the number of elements for each sideset.

* Updated Exodus II writer to write boundary element IDs and side IDs to file.

* Corrected the side_ids_for_boundary_id mapping.

* Rewritten function to generate Exodus II boundary info.

* Fixed incorrect dimensions passed to nc_def_var.

* Added line length and version number info.

* Added header information.

* Removed NETCDF_4 flag (not supported by some programs). Manually setting nc_enddef and nc_redef.

* Added info for timesteps, updated file size info, added info for block element types.

* Added dummy variable to get-around bug in libMesh which prevents the x-coordinate from being read.

* Added ExodusII writer Hex8 test case.

* Updated exodus_writer to handle Tet4.

* Added Tet4 test case and a comparison test function.

* Fixed incorrect variable name.

* Added MFEM to ExodusII side map for Hex8.

* Added Tet4 test ExodusII file.

* Added Wedge6 support to ExodusII writer.

(cherry picked from commit 9412dac5c4dde84732d2f8e82787eac3f9e48906)

* Added ExodusII Wedge6 test case.

(cherry picked from commit 0e69f28a5f357fc44d22f52b1cd5f7a63e492b2b)

* Added Pyramid5 support.

(cherry picked from commit 679b1e4c3f9298513627d27ea130b5e87b80350c)

* Added Pyramid5 test case.

(cherry picked from commit 2f90b786a0228892f76f926af5e0fe04ab741977)

* Commented-out Wedge6 and Pyramid5 tests since the files cannot be read until ReadCubit is updated in a separate PR.

* Removed unused dimension definition; Added support for writing mixed first-order meshes.

(cherry picked from commit 4c111d6f9198f418d32df98fd5e711455f73170a)

* Commented-out test cases that cannot be run with existing ReadCubit ExodusII reader.

* STarted writing a class to encapsulate writing.

* Converted functions to methods in class.

* Removed mesh argument from methods.

* Added CreateEmptyFile, WriteTitle and WriteNumOFElements methods.

* Added database/api versions, floating point word size, max line/name lengths.

* writing element block parameters now handled in class method.

* Sideset information now stored inside class.

* writing nodal variables is now done in a method.

* Add functionality now added to class.

* Added a DefineDimension wrapper around nc_def_dim.

* Added DefineVar wrapper method.

* Added a static method for writing to a file.

* Reordered methods.

* Updated documentation.

* Added safety check to ensure mesh is first-order.

* Added PutVar wrapper method.

* Added PutAtt method.

* Replaced nc_put_att_text.

* Moved nc_redef and nc_enddef into methods.

* WriteNodalCoordinates is now a single method.

* Added DefineAndPutVar method to simplify code.

* Added a macro to check NetCDF status.

* Added a GenerateLabel method.

* Added global named C string labels.

* Updated documentation; merged methods.

* Merged methods for writing boundary info.

* WriteElementBlocks now contains all methods related to this.

* Moved ExodusII file information writer methods into a new method.

* Moved all mesh writer methods into new method.

* Added safety check method.

* Reordered globals; updated documentation; switched set to unordered_set.

* Added test case for Tet10; added additional dofs checks.

* Added handling of second-order Tet (Tet10) elements to exodus writer.

* Updated the "elem_type" names.

* Added Hex27 support to writer.

* Added Hex27 test.

* Added support for Wedge18.

* Added mapping for Pyramid14 (cannot test until reader is able to handle higher-order pyramids).

* Added test files; added additional unit tests.

* Added test comments.

* Commented-out mixed second-order writer test since current reader cannot handle multiple element types.

* Addresses compiler warnings.

* Updated documentation.

* Minor changes to increase readability.

* Updated changelog.

* Address build issue.

* Address compiler warning for unused function used in the unit tests.

* Moves "WriteExodusII" further down to live with the Print methods.

* Renamed "WriteExodusII" to "PrintExodusII" to be consistent.

* Moves ExodusII labels into their own namespace to avoid polluting mfem namespace.

* Temporary mesh output files are now placed in current directory.

* Removes temporary output meshes to avoid false positives.

* Adding Exodus II output option to mesh-explorer

* make style

* Moves ExodusII test meshes into mfem/data directory.

* Fixes minor typo for GenerateExodusIIElementBlocks  documentation.

* Adds a check to confirm that the nodes correspond to a 2nd order H1 space.

* Moves CheckNodalFESpaceIsSecondOrderH1 implementation to bottom.

* Applies style.

* Removes unneeded semi-colon from ExodusIILabels namespace.

* Moves side map arrays into ExodusIISideMaps labels.

Avoids polluting mfem namespace.

* Moves node ordering maps into ExodusIINodeOrderings namespace.

Ensures that mfem namespace is not polluted.

* Removes documentation from #define to fix failing check.

* Revert "Removes documentation from #define to fix failing check."

This reverts commit 39bc2ce836.

* Removes Doxygen documentation from #define to hopefully fix failing test.

* Fixes an issue where the writer failed on interior boundaries.

This initial fix skips internal boundaries. These are not added and a warning is printed indicating which interior boundaries have been skipped.

* Removes mesh test files.

* ExodusII write tests now use mfem/data repository.

* Adds ExodusII test tag.

* Removes varaible underscore prefixes.

* Applies style.

* Uses Generate macro to avoid test duplication.

* Adds link to libMesh issue.

---------

Co-authored-by: Edward Palmer <edward.palmer@ukaea.uk>
Co-authored-by: Tzanio Kolev <tzanio@llnl.gov>
Co-authored-by: Stowell, Mark L <stowell1@llnl.gov>
2024-06-14 10:26:55 -07:00
john bowen cb6d48f499 Simplify Run method in kernel dispatch 2024-06-13 15:18:33 -07:00
Will Pazner 36dea0cf38 Merge pull request #4348 from mfem/facerestriction-native-err
Actually throw an error when using native ordering in FaceRestriction
2024-06-13 13:25:25 -07:00
john bowen 01dfecd67e Fix unit test failures 2024-06-13 09:40:43 -07:00
Will Pazner 94ca7d26e8 Check for A.Empty() instead of A == NULL in SparseMatrix 2024-06-13 08:53:05 -07:00
Tzanio Kolev 46e35d0bce Merge pull request #4270 from mfem/findpts-custom-interpolation
Support for custom interpolation procedure using FindPointsGSLIB.
2024-06-13 15:07:02 +01:00
Tzanio Kolev d582c31370 Merge branch 'master' into findpts-custom-interpolation 2024-06-13 15:06:45 +01:00
john bowen f387244e57 Update kernel dispatch to support QuadratureInterpolator 2024-06-12 13:21:20 -07:00
Veselin Dobrev 8876a84dd4 A set of fixes for small bugs uncovered during the more extensive
testing of https://github.com/spack/spack/pull/44010.
2024-06-12 12:06:56 -07:00
Tzanio Kolev 8153d11274 Merge pull request #3999 from mfem/hdiv-nurbs
Adding H(div) and H(curl) conforming NURBS FiniteElements
2024-06-11 22:37:08 +01:00
Tzanio Kolev 827ed64113 Merge branch 'master' into hdiv-nurbs 2024-06-11 22:36:58 +01:00
Tzanio Kolev ef9f02ba53 Merge pull request #2854 from mfem/var-order-href-op
Variable order space: h-(de)refinement transfer operator
2024-06-11 20:25:12 +01:00
Tzanio Kolev e9a0b0620a Update tests/unit/fem/test_hp_transfer.cpp 2024-06-11 12:24:39 -07:00
Tzanio Kolev 4d9d444248 Merge pull request #4343 from mfem/sample-runs-update
Sample runs update
2024-06-11 20:23:41 +01:00
Tzanio Kolev 6e2badecca Merge pull request #4337 from mfem/lapack-cleanup
Deduplicate single/double precision LAPACK
2024-06-11 20:22:01 +01:00
Tzanio Kolev 99b45fcb02 Merge pull request #4327 from mfem/sjg/mesh-vertex-bdr-table
Add `Mesh::GetVertexToBdrElementTable`
2024-06-11 20:20:12 +01:00
Mittal, Ketan 003dc46a84 Merge branch 'master' of https://github.com/mfem/mfem into findpts-custom-interpolation 2024-06-10 20:33:36 -07:00
Mittal, Ketan 7fac0fbd07 add gslib unit test file to CMakeLists.txt 2024-06-10 20:33:25 -07:00
Will Pazner 9a327eeca6 Merge pull request #4332 from mfem/sjg/cuda-atomicadd-fix
Fix compiler error for `real_t` and old CUDA architectures < 60
2024-06-10 17:07:12 -04:00
Julian Andrej 086f6c9847 assert -> verify 2024-06-10 10:30:58 -07:00
Julian Andrej 480e90b41b actually throw an error when using native ordering in FaceRestriction 2024-06-10 08:11:07 -07:00
Mittal, Ketan bc6ba0252a rename method 2024-06-06 12:39:24 -07:00
Will Pazner 262fa6173d Remove unneeded '#ifdef MFEM_USE_SINGLE' 2024-06-05 21:20:59 -07:00
Will Pazner e4b8584a16 Formatting 2024-06-05 21:20:59 -07:00
Socratis Petrides 7912d6915d silly mistake 2024-06-05 18:16:45 -07:00
Socratis Petrides 293d9009ae replace abort with skip so that make test passes with lapack 2024-06-05 17:25:00 -07:00
Socratis Petrides 51bde67bb1 fixing default tol in eltrans 2024-06-05 17:24:24 -07:00
Mittal, Ketan 9caa48d5c8 clean up 2024-06-05 17:15:51 -07:00
Mittal, Ketan f4d286b4b7 hide some arrays not needed by user 2024-06-05 16:12:54 -07:00
Sebastian Grimberg 45e2636921 Address PR feedback: Add const 2024-06-05 14:19:49 -07:00
Mittal, Ketan 57876fbfb0 minor 2024-06-05 09:27:12 -07:00
Mittal, Ketan 47b519047a reviewer comments 2024-06-04 23:17:51 -07:00
Veselin Dobrev 35225e045e Updated the script 'config/sample-runs.sh' to
* run examples 40-99
* run autodiff, dpg, hdiv-linear-solver, and moonolith miniapps
* run additional meshing miniapps
* add 'todo' comments for other missing miniapps

Updated the formatting of sample runs in miniapps/dpg.
2024-06-04 14:17:13 -07:00
Socratis Petrides 22c1087503 VariableOrderRefinementMatrix_main -> VariableOrderRefinementMatrix 2024-06-04 11:32:24 -07:00
Socratis Petrides cd5d2f7c04 minor tweaks 2024-06-03 22:21:20 -07:00
Ketan MittalandVladimir Tomov 7fc2ce350d Update fem/gslib.hpp based on reviewer's suggested change
Co-authored-by: Vladimir Tomov <tomov2@llnl.gov>
2024-06-03 15:18:05 -07:00
Will Pazner cbae29ad06 Suppress Doxygen warnings in LAPACK header
Otherwise Doxygen complains:

warning: documented symbol 'void mfem::MFEM_LAPACK_PREFIX' was not declared or defined.
2024-06-02 13:21:37 -07:00
Will Pazner 4c1d842c72 Adjust tolerances depending on single or double precision
ex38 was not converging in single precision with previous tolerances
2024-06-02 13:21:37 -07:00
Will Pazner 4aa0ed52af Don't duplicate single and double precision LAPACK code
Introduce MFEM_LAPACK_PREFIX and MFEM_LAPACK_COMPLEX to prepend 's', 'd', 'c',
or 'z' to the BLAS/LAPACK function name according to the precision.

Add new header lapack.hpp with declarations of the LAPACK functions.
2024-06-02 13:06:51 -07:00
Socratis Petrides 8712d02570 remove leftover RT space from enum 2024-05-31 11:17:00 -07:00
Socratis Petrides e5fec6279b minor fix 2024-05-31 11:11:24 -07:00
Socratis Petrides e90e96f9a5 add unit L2 test 2024-05-31 11:04:51 -07:00
Sebastian Grimberg cc00ef7d90 Fix compiler error for real_t and old CUDA architectures pre-6.0 2024-05-30 13:52:27 -07:00
john bowen 7b84f6ddc6 Merge branch 'master' into dispatch-map 2024-05-30 08:19:05 -07:00
Christopher vogl 2c0346bc36 second pass to CHANGELOG addition to more specifically describe new functionality of ARKStepSolver 2024-05-29 17:33:46 -07:00
Christopher vogl 56186d8770 fixed typos in previous commit 2024-05-29 17:21:18 -07:00
Christopher vogl 1645b854a4 updated CHANGELOG to note refactoring in ARKStepSolver 2024-05-29 17:20:18 -07:00
Christopher vogl 69fd2f9051 Merge remote-tracking branch 'origin/master' into 3942-add-test-for-sundials-usemfemmasslinearsolver
- needed to pull in changes to CHANGELOG before adding to it
2024-05-29 17:00:44 -07:00
Christopher vogl ba4b627e68 updated comments in SUNDIALS examples to reflect target name differences between GNU make and CMake 2024-05-29 11:53:01 -07:00
IdoAkkerman 62c535d0ee Merge branch 'hdiv-nurbs' of github.com:mfem/mfem into hdiv-nurbs 2024-05-29 17:56:33 +02:00
IdoAkkerman 17829d1c38 Seperate NURBS examples in dox - small typo 2024-05-29 17:56:15 +02:00
IdoAkkerman dd198ce3f9 Seperate NURBS examples in dox 2024-05-29 17:54:43 +02:00
IdoAkkerman b9f36468ba Move changes to v 4.7.1 2024-05-29 17:45:30 +02:00
Tzanio Kolev 76bcd044d0 Merge branch 'master' into hdiv-nurbs 2024-05-29 07:49:33 -07:00
Christopher vogl 0dff351b2e added new example 16 tests to GNU build system. 2024-05-28 12:05:03 -07:00
Christopher vogl 55a914321d refactored sample runs to exclude sundials_ prefix 2024-05-28 11:56:44 -07:00
Christopher vogl 1410aef639 updated examples/sundials/CMakeLists.txt so the executables are named the same as with GNU build system 2024-05-28 11:56:24 -07:00
Chris VoglandVeselin Dobrev e1ac8ca08c Adding precision to Save call in SUNDIALS ex16
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2024-05-28 11:00:45 -07:00
IdoAkkerman 28916b23a4 Merge branch 'master' into hdiv-nurbs 2024-05-27 10:24:58 +02:00
IdoAkkerman 7476c00f2b Solenoidal convergence check SINGLE/DOUBLE 2024-05-27 10:23:03 +02:00
Socratis Petrides 7a0137c496 generalize unit test 2024-05-24 12:49:18 -07:00
Socratis Petrides 4267b2af05 fix for using Rhp in the deref case and addressing reviewer comments 2024-05-24 12:48:51 -07:00
Socratis Petrides e37daad5eb fix from Dylan 2024-05-24 12:48:10 -07:00
Socratis Petrides 20b4b72071 Merge branch 'master' into var-order-href-op 2024-05-23 19:25:48 -07:00
Sebastian Grimberg ddf80492c5 Add Mesh::GetVertexToBdrElementTable 2024-05-23 11:13:16 -07:00
Christopher vogl 712ae82026 updated documentation of ExplicitMult to mention ARKStep 2024-05-22 15:25:42 -07:00
Christopher vogl 53dd97e0d8 updated checks to be 'not EXPLICIT' in ARKStepSolver, adding one to UseSundialsMassLinearSolver as well 2024-05-22 14:08:31 -07:00
Christopher vogl 0c413570c4 braces added to meet style requirements 2024-05-22 13:43:24 -07:00
IdoAkkerman f8d18cd4be Merge branch 'master' into hdiv-nurbs 2024-05-22 17:45:58 +02:00
IdoAkkerman 994d83dd80 Modify tolerance for single precision - more relaxed 2024-05-22 17:44:17 +02:00
IdoAkkerman f218efae09 Modify tolerance for single precision 2024-05-22 16:06:11 +02:00
Christopher vogl 43bb865c26 updated SUNDIALS ex16 and ARKStepSolver to use TDO::Type 2024-05-21 19:51:22 -07:00
Christopher vogl dd9b723cfd reverted addition of SetImplicit in lieu of calling code using constructor... corrected typo 2024-05-21 19:39:59 -07:00
Christopher vogl 87362ca1ca added TimeDepedentOperator::SetImplicit function 2024-05-21 16:47:07 -07:00
Christopher vogl a6afefc6a5 updated documentation of SUNDIALS functions in TimeDependentOperator 2024-05-21 16:46:11 -07:00
Christopher vogl e1dc4680d3 using real_t in SUNDIALS ex16, ex16p, and ARKStepSolver 2024-05-21 15:01:11 -07:00
Christopher vogl 44985dacc0 Merge branch 'master' into 3942-add-test-for-sundials-usemfemmasslinearsolver 2024-05-21 14:21:32 -07:00
Mittal, Ketan 9c77f6b407 minor 2024-05-21 11:54:14 -07:00
Mittal, Ketan 8df0341e11 Merge branch 'master' of https://github.com/mfem/mfem into findpts-custom-interpolation 2024-05-21 11:51:37 -07:00
Ido Akkerman af24eaea27 Merge branch 'master' into hdiv-nurbs 2024-05-21 10:57:13 +02:00
Mittal, Ketan 7338e797bb merge with master and resolve conflict 2024-05-17 09:49:11 -07:00
Mittal, Ketan 31d931a99c Update changelog 2024-05-16 11:01:06 -07:00
Ketan Mittal 3ae930c93b Merge branch 'master' into findpts-custom-interpolation 2024-05-16 10:52:44 -07:00
Mittal, Ketan 36f882257e minor doc update 2024-05-16 10:34:49 -07:00
IdoAkkerman 8adb7461b0 Comment on array of NURBSexts 2024-05-15 10:38:14 +02:00
IdoAkkerman 716e370d35 Fix merge 2024-05-14 14:21:58 +02:00
IdoAkkerman 37c0768fe3 Merge branch 'master' into hdiv-nurbs 2024-05-14 14:12:44 +02:00
Mittal, Ketan 217b77d5f0 minor 2024-05-09 11:33:21 -07:00
Mittal, Ketan bb67d6cb98 add unit test 2024-05-09 11:30:27 -07:00
Mittal, Ketan 696cbd05e8 improved documentation 2024-05-01 14:18:30 -07:00
Chris Vogl 6c8a4188a1 Merge branch 'master' into 3942-add-test-for-sundials-usemfemmasslinearsolver 2024-04-30 11:45:49 -07:00
Mittal, Ketan 829b123641 minor fix for when there are no points received on a rank 2024-04-25 12:22:41 -07:00
Mittal, Ketan bd52201add minor 2024-04-25 12:07:33 -07:00
Mittal, Ketan 812ecce84a add doxygen comments 2024-04-25 12:06:00 -07:00
Mittal, Ketan 172c38b675 initial commit 2024-04-25 11:17:02 -07:00
Ido Akkerman 875b5f3f52 Update nurbs_naca_cmesh.cpp 2024-04-05 22:34:26 +02:00
IdoAkkerman be1f36a523 Merge branch 'master' into hdiv-nurbs 2024-04-05 21:54:43 +02:00
IdoAkkerman d4c7dd3490 Double -> Real 2024-04-05 21:53:48 +02:00
IdoAkkerman 1bac61ad1c Typos 2024-04-05 09:04:06 +02:00
IdoAkkerman c7451115d8 Typos 2024-04-05 09:00:12 +02:00
IdoAkkerman 72ae003a00 double -> real_t 2024-04-05 08:51:50 +02:00
IdoAkkerman d67098b8f8 remove unused variable 2024-04-04 22:06:01 +02:00
IdoAkkerman 0e6dbaf050 remove 999 statement 2024-04-04 21:52:34 +02:00
IdoAkkerman 32afc8565c remove 9999 statement 2024-04-04 21:48:24 +02:00
IdoAkkerman 48ace60875 order[2] big fix + small cosmetic changes 2024-04-04 21:46:38 +02:00
IdoAkkerman 9b6ee6fcad Add papers -- comment flipped with previous commit 2024-04-04 14:44:54 +02:00
IdoAkkerman 1a1639b87e Add neumann example 2024-04-04 14:44:14 +02:00
IdoAkkerman 3735aa504b Comments dec 2023 2024-04-04 12:50:03 +02:00
Ido Akkerman 367dda6794 Merge branch 'master' into hdiv-nurbs 2024-04-04 11:59:43 +02:00
IdoAkkerman e4a85f79cd Remove multipatch examples in ex24 2024-04-03 22:30:00 +02:00
IdoAkkerman 678101938b Merge branch 'master' into hdiv-nurbs 2024-04-03 13:37:00 +02:00
IdoAkkerman 9a3aa18c62 Fix 3D Hcurl 2024-04-03 13:24:20 +02:00
IdoAkkerman 5a3ba1424a Update comments 2024-04-02 13:29:48 +02:00
IdoAkkerman 3bb8419a96 Add miniapp source to doc 2024-04-02 13:07:45 +02:00
IdoAkkerman ce29282f63 Add Hdiv and Hcurl NURBS to changelog 2024-04-02 12:51:37 +02:00
IdoAkkerman 9575299ae3 Merge branch 'master' into hdiv-nurbs 2024-04-02 09:04:07 +02:00
IdoAkkerman 995ceca6c2 Cosmetic fix of 2D Hcurl dof count 2024-04-02 09:03:04 +02:00
Christopher vogl 012aa50cd3 accounted for residual differences in SUNImplicitSolve is mass linear solve is used 2024-03-28 23:03:25 -07:00
Christopher vogl d0193919c4 updated parallel version of ex16 2024-03-28 21:27:47 -07:00
Christopher vogl 422ca290b5 added more explanation for SUNImplicitSetup 2024-03-28 20:16:01 -07:00
Christopher vogl 59e1d7bf27 updated comments to reflect the linearization assumption used throughout 2024-03-28 20:09:49 -07:00
Christopher vogl 09dd9656c8 updated ex16 for SUNDIALS to make of ExplicitMult to unify TDO implementations 2024-03-28 19:50:04 -07:00
Christopher vogl e9afca2cd6 updated RHS1 and RHS2 in ARKStepSolver to use ExplicitMult for mass form ODEs 2024-03-28 19:49:14 -07:00
IdoAkkerman 6abd0e6002 Fix 2d Curl 2024-03-28 13:29:15 +01:00
IdoAkkerman 656e3062b4 Fix mesh name in example 2024-03-28 13:14:40 +01:00
john bowen 5f083cea48 Remove ubuntu cmake build error 2024-03-27 16:56:25 -07:00
john bowen 80e29c8950 Delete use of sizeof... due to msvc incompatability. 2024-03-27 16:34:34 -07:00
john bowen 7264091c6f Fix mac build 2024-03-27 16:12:12 -07:00
john bowen 33c0df349d fix makefile build 2024-03-27 14:59:13 -07:00
john bowen d3015edb40 Delete double usage 2024-03-27 14:18:55 -07:00
john bowen 927c7f82be Merge branch 'master' into dispatch-map 2024-03-27 14:13:17 -07:00
john bowen 008dda250b Fix unit tests 2024-03-27 14:08:54 -07:00
IdoAkkerman 9c9c519175 Add exso.mesh to gitignore -- prevent regression test error 2024-03-27 14:23:14 +01:00
IdoAkkerman 8300809562 Fix double real_t conversion 2024-03-27 13:57:51 +01:00
IdoAkkerman cce7296ffe Tweak example runs in miniapps; add comments; remove comments 2024-03-27 13:39:50 +01:00
IdoAkkerman a445ad00da Update clean statement in makefile 2024-03-27 13:38:26 +01:00
IdoAkkerman 4db7e1a107 Add comments to NURB extension mode 2024-03-27 13:37:36 +01:00
IdoAkkerman c51a1c4aa9 Remove comment in nurbs, tweak error statement 2024-03-27 13:37:09 +01:00
IdoAkkerman d489908e50 Merge branch 'master' into hdiv-nurbs 2024-03-26 16:55:17 +01:00
IdoAkkerman c4eda188d5 Tweak nurbs ex24 2024-03-26 16:31:27 +01:00
IdoAkkerman 677eb4c876 Change solver params for nurbs ex5 2024-03-26 16:30:57 +01:00
IdoAkkerman 69a4aa70b9 Fix mapping in NURBS Hdiv 3D 2024-03-26 15:37:49 +01:00
IdoAkkerman f07c2f460d Update copyright statement 2024-03-26 10:29:49 +01:00
Socratis Petrides 09c557bdd7 Merge branch 'master' into var-order-href-op 2024-03-21 19:45:57 -07:00
Socratis Petrides e487da01c5 adding unit tests 2024-03-21 19:44:43 -07:00
john bowen a6b00aacbf Merge branch 'master' into dispatch-map 2024-03-21 12:23:59 -07:00
john bowen 504ae95915 fix ld error 2024-03-21 12:23:26 -07:00
IdoAkkerman b6b6843ad2 Merge branch 'master' into hdiv-nurbs 2024-03-21 15:46:53 +01:00
john bowen 5d28b67295 copyright 2024-03-19 13:06:20 -07:00
john bowen b19800f1a7 Workaround for GCC limitation on class method non-type variadic pack deduction 2024-03-19 13:04:44 -07:00
Mittal, Ketan 66a1379947 Merge branch 'var-order-href-op' of https://github.com/mfem/mfem into var-order-href-op 2024-03-13 13:10:41 -07:00
Mittal, Ketan 546ba6c11e add support for h-derefinement 2024-03-13 13:10:24 -07:00
Mittal, Ketan 67ba63c2f4 Merge branch 'master' of https://github.com/mfem/mfem into var-order-href-op 2024-03-13 13:08:02 -07:00
Socratis Petrides 99c2967920 Merge branch 'master' into var-order-href-op 2024-03-08 12:07:52 -08:00
john bowen e96dc7e4aa copyright 2024-03-07 10:59:20 -08:00
john bowen 3a113dcdd6 Merge branch 'master' into dispatch-map 2024-03-07 10:44:09 -08:00
john bowen 6a6d7eb83c Astyle 2024-03-07 10:43:50 -08:00
john bowen 8a0e295691 Delete occa merge artifact 2024-03-05 09:57:20 -08:00
Socratis Petrides 2dc419f1ae Merge branch 'master' into var-order-href-op 2024-03-04 11:36:38 -08:00
Mittal, Ketan 450d6cea6d Merge branch 'master' of https://github.com/mfem/mfem into var-order-href-op 2024-03-04 09:51:05 -08:00
john bowen 3386418737 Fixing build issues 2024-03-01 13:03:51 -08:00
john bowen 2f09777b17 tmp 2024-02-29 12:35:06 -08:00
Socratis Petrides 75df4ad3e6 replace umfpack with PCG 2024-02-16 12:18:21 -08:00
Socratis Petrides 4048d46443 Merge branch 'master' into var-order-href-op 2024-02-16 12:02:58 -08:00
john bowen 12842aa9e1 Tmp: Add non type parameter packs to generalize AddSpecialization API 2024-02-15 10:02:44 -08:00
john bowen b07ff3f5db Merge branch 'master' into dispatch-map 2024-02-08 09:34:15 -08:00
john bowen b86fdfb46c Add clangd files to gitignore 2024-01-30 10:56:05 -08:00
john bowen 50905e0dcb Copyright 2024-01-30 10:55:15 -08:00
john bowen 9702811d72 Fix linker errors 2024-01-16 17:28:47 -08:00
john bowen 955fe9f9df Merge branch 'master' into dispatch-map 2024-01-16 14:44:06 -08:00
john bowen 97e4f45be3 astyle format 2024-01-16 14:43:30 -08:00
john bowen 60242d41bd Fix makefile build error 2024-01-16 14:33:40 -08:00
john bowen 1fb47dab6b Cleanup following rebase 2024-01-16 13:35:46 -08:00
john bowen cd671cae3e tmp 2024-01-03 13:58:12 -08:00
john bowen c2154f95fe Merge branch 'master' into dispatch-map 2024-01-02 13:14:48 -08:00
Christopher vogl bbd4edce83 style changes 2023-12-27 14:34:32 -08:00
Christopher vogl 1742616cac uncommited changes to add UseMFEMMassLinearSolver to CTest suite 2023-12-27 14:34:21 -08:00
Christopher vogl 2c64bbab79 refactored 16p with all changes made to 16 2023-12-27 12:36:16 -08:00
Christopher vogl 785fa7adc2 added some comments to clarify difference between MFEM and SUNDIALS solves 2023-12-27 12:33:46 -08:00
Christopher vogl 0248c58591 use newer GridFunction::Save 2023-12-27 12:11:52 -08:00
Christopher vogl 160e783638 whitespace cleanup 2023-12-27 12:11:35 -08:00
Christopher vogl ddd2500a9c removed deprecate SetParameters definition 2023-12-27 12:11:14 -08:00
Christopher vogl 2b5dee2b95 added more example to show speedup with mass form 2023-12-27 12:10:49 -08:00
Christopher vogl 26393f230f corrected typos and added runs to sample runs 2023-12-27 11:10:01 -08:00
Christopher vogl 8e9948d729 removed no longer necessary auxilliary variable 2023-12-22 17:27:11 -08:00
Christopher vogl 9bbbd8c324 refactor to eliminate the copy-paste in SetParameters 2023-12-22 17:23:40 -08:00
Christopher vogl a19e7cb38e some last touchups to ex16 2023-12-22 15:43:34 -08:00
Christopher vogl 3a2912bc0b factored ConductionOperator into separate classes 2023-12-22 14:37:48 -08:00
Christopher vogl 5cfd284cb8 implemented new mfem mass options 2023-12-22 13:45:14 -08:00
Christopher vogl eeae538115 updated comments 2023-12-21 22:45:36 -08:00
Christopher vogl 8a98c0332f fixed copy-paste bug in sundials: LSA should be LSM 2023-12-21 22:43:06 -08:00
Christopher vogl 84d44db3a7 Implemented new SUN routines & fixed tolerance bug 2023-12-21 22:22:57 -08:00
Christopher vogl c97af2f3dc Converted remaining raw pointers in SUNDIALS ex16
originally was going to keep the raw pointers in the ConductionOperator to
facilitate comparison with MFEM ex16, but now want to avoid incurring more
technial debt as additional TimeDependentOperator functions are implemented
2023-12-21 15:12:49 -08:00
Christopher vogl c4ca3bfc5f Cleanup of SUNDIALS ex16 ConductionOperator
added override keywords and removed unnecessary virtual specifications
2023-12-21 15:02:08 -08:00
IdoAkkerman b03cf507be Fix debug stuff 2023-12-21 17:04:02 +01:00
IdoAkkerman 066dc9b078 Us prev. unused variable 2023-12-21 15:16:29 +01:00
IdoAkkerman 70854254e7 Report Dofs in boundary for ex5 2023-12-21 14:45:42 +01:00
IdoAkkerman 646df28ac8 Add sign to Hdiv bdr dof indices 2023-12-21 14:45:09 +01:00
IdoAkkerman 73d4f987e4 Add direction to 2D Hdiv bdr indices 2023-12-21 14:14:39 +01:00
IdoAkkerman c59d519c89 Allow for negative dof indices 2023-12-21 14:12:21 +01:00
IdoAkkerman 1ec2cba9e8 Allow for negative dof indices in Table merge constructor 2023-12-21 14:11:11 +01:00
IdoAkkerman 26cc1f8387 Fix 2D curl 2023-12-21 09:40:38 +01:00
Christopher vogl 85fe35bec2 replaced c-style pointer main use in SUNDIALS ex16
-used std::unique_ptr and dynamic casting instead
-avoided changing ConductionOperator for comparison to MFEM ex16
2023-12-20 19:17:24 -08:00
IdoAkkerman b57fa2b127 Add neumann/periodic test case 2023-12-20 12:53:32 +01:00
IdoAkkerman 596909138a Cleaner bc selection/reporting in ex1 2023-12-20 12:53:07 +01:00
IdoAkkerman c11a76f2c1 Update make clean call 2023-12-19 16:52:34 +01:00
IdoAkkerman 51d32ad293 merge master - manual 2023-12-19 16:16:00 +01:00
IdoAkkerman a433e9e0b4 Fix small numbering issue 2023-12-19 14:33:07 +01:00
IdoAkkerman abac61f5b5 Add Hcurl boundary + allow GF read to set dim with seperate call 2023-12-19 14:32:26 +01:00
IdoAkkerman a121a9d186 Small order fix 2023-12-19 14:31:20 +01:00
IdoAkkerman 58ecbf6150 Use new ext and table modes 2023-12-19 14:30:23 +01:00
IdoAkkerman bad5ae41d1 Add bdr dof selection option 2023-12-19 14:29:35 +01:00
IdoAkkerman e773e07373 Make Table merge generic 2023-12-19 14:28:17 +01:00
IdoAkkerman c3ded3c003 Add dim for fe_coll and ess bc output 2023-12-19 14:27:47 +01:00
IdoAkkerman 76e04c4606 Make style 2023-12-15 17:24:11 +01:00
IdoAkkerman 83ccf77d2f Fixing gitignore 2023-12-15 17:00:57 +01:00
IdoAkkerman a0d53975d8 Adding boundary elements to Hdiv collection pt2 2023-12-15 16:17:49 +01:00
IdoAkkerman 1252c0fbb9 Merge branch 'hdiv-nurbs' of /home/ido/Data/mfem/mfem into hdiv-nurbs 2023-12-15 16:14:34 +01:00
IdoAkkerman 04acf613ae Adding boundary elements to Hdiv collection 2023-12-15 16:14:20 +01:00
IdoAkkerman c8bddb8035 Merge branch 'master' into hdiv-nurbs 2023-12-15 14:38:11 +01:00
IdoAkkerman 467e83da31 Fixed nurbs miniapps 2023-12-15 14:36:31 +01:00
IdoAkkerman 8b29ef1335 style fix in fe_nurbs 2023-12-15 14:26:34 +01:00
IdoAkkerman 1076700714 Cmake fixes 2023-12-15 14:26:03 +01:00
IdoAkkerman 978f1155c5 Update Makefile 2023-12-15 14:25:34 +01:00
IdoAkkerman 3096d9d9cb Fixed some sloppiness 2023-12-15 13:51:27 +01:00
IdoAkkerman ffea75abb2 Fixed Table comments 2023-12-15 13:47:04 +01:00
IdoAkkerman a44a8b8789 Made booleans const 2023-12-15 13:43:09 +01:00
IdoAkkerman 05106096c3 Symmetrice delete call 2023-12-15 13:41:43 +01:00
IdoAkkerman ba7fd7a9a9 Remove superfluous hdiv check 2023-12-15 13:38:44 +01:00
IdoAkkerman 9b0e4e0085 Fix nurbs miniapp cmake 2023-12-15 13:38:25 +01:00
IdoAkkerman 3cb64f7f7e Merge branch 'hdiv-nurbs' of /home/ido/Data/mfem/mfem into hdiv-nurbs 2023-12-15 13:25:28 +01:00
IdoAkkerman 6642857437 Fix uninit error 2023-11-29 17:19:52 +01:00
IdoAkkerman 91f00d643a Fix shadow varaibel in fespace 2023-11-29 17:12:17 +01:00
IdoAkkerman ce8b62cfe7 Add override keyword for macosx 2 2023-11-29 16:51:03 +01:00
IdoAkkerman 4064bda60d Add override keyword for macosx 2023-11-29 16:50:15 +01:00
IdoAkkerman 4a21554986 Remove unused variables from table 2023-11-29 16:43:10 +01:00
IdoAkkerman 165968dc26 Make style 2023-11-29 16:40:48 +01:00
IdoAkkerman 9eb70f7be0 Add tests 2023-11-29 16:38:01 +01:00
IdoAkkerman 8797a9cb00 Small ex24 tweaks 2023-11-29 16:37:42 +01:00
IdoAkkerman 8366a5a6d6 Fix documentation error 2023-11-29 12:17:15 +01:00
IdoAkkerman 63a9d5749b Delete parallel miniapp 2023-11-29 12:16:58 +01:00
IdoAkkerman 0e6aa41245 Update nurbs miniapps 2023-11-29 12:11:37 +01:00
IdoAkkerman bbcb054814 example update 2023-11-29 12:08:38 +01:00
IdoAkkerman 2e5a86db7a Merge branch 'master' into hdiv-nurbs 2023-11-29 09:24:21 +01:00
IdoAkkerman 057b15cefb miniapps/nurbs/nurbs_ex24p.cpp 2023-11-28 16:52:13 +01:00
IdoAkkerman 7c06741f36 Remove debug print statement 2023-11-28 15:37:41 +01:00
IdoAkkerman 3a0c42aea5 Add L2 projection for NURBS 2023-11-28 15:37:16 +01:00
IdoAkkerman 75d5555a5f Component output not necessary anymore 2023-11-28 10:35:37 +01:00
IdoAkkerman 10c1ac9a66 Add nurbs hdiv hcurl examples/tests 2023-11-28 10:34:06 +01:00
IdoAkkerman 692e15c088 Make style 2023-11-28 09:57:11 +01:00
IdoAkkerman 6be9665bfb Add mappings to VShape Trans calls 2023-11-27 17:24:23 +01:00
IdoAkkerman 9be617d754 Add Hdiv and Hcurl NURBS to fe coll selection mechanism 2023-11-27 16:58:10 +01:00
IdoAkkerman ec4f37fe25 Make style 2023-11-27 16:57:28 +01:00
IdoAkkerman 6bb4ae9d50 Small correction in solenoidal test app 2023-11-27 16:57:00 +01:00
IdoAkkerman c7a3f188c0 Add output 2023-11-21 17:28:15 +01:00
IdoAkkerman 8e44509585 Make style 2023-11-21 17:27:26 +01:00
IdoAkkerman 787954715b Make style and small compile order fix nurbs fe 2023-11-21 17:26:30 +01:00
IdoAkkerman 9f03260dd2 Fix Hcurl boundary dof table 2 2023-11-21 17:24:23 +01:00
IdoAkkerman 5c3a3f7fdf Add Curl miniapp 2023-11-21 13:08:20 +01:00
IdoAkkerman 6693b22c83 Small compile fixes 2023-11-21 12:55:01 +01:00
IdoAkkerman 49c7f60a57 Add routines to make a Hcurl fespace 2023-11-21 12:49:37 +01:00
IdoAkkerman ace4608f10 Add H curl NURBS collection 2023-11-21 12:41:06 +01:00
IdoAkkerman 3899dfcc64 Remove interfaces -- will implement in follow-up PR 2023-11-21 12:40:39 +01:00
IdoAkkerman 2dc98e9153 Add H curl NURBS elements 2023-11-21 12:39:47 +01:00
IdoAkkerman 90f8a2409f Add divergence free test case 2023-11-21 11:59:37 +01:00
IdoAkkerman 92dc0db889 Fix patch check 2023-11-21 10:23:42 +01:00
IdoAkkerman d8fc48e608 Clean up of projection miniapp 2023-11-20 14:21:05 +01:00
IdoAkkerman 611802f990 Rename extension routine 2023-11-20 14:18:27 +01:00
IdoAkkerman 606df86b0a Component Extension generator 2023-11-20 14:08:27 +01:00
IdoAkkerman 2f7d38e6f6 Fix typo 2023-11-20 14:00:19 +01:00
IdoAkkerman b90d665ced Clean fe collection 2023-11-20 14:00:04 +01:00
IdoAkkerman 50dd77ffd4 Make style 2023-11-20 13:53:10 +01:00
IdoAkkerman 5e5b79783c Other comment -- make style 2023-11-20 13:51:37 +01:00
IdoAkkerman c815114661 Add explaination to new table constructors 2023-11-20 13:48:53 +01:00
IdoAkkerman 93f6a53201 FES cleaning, renaming and memleak fix 2023-11-20 13:35:55 +01:00
IdoAkkerman a3ee0cfe79 Add 3D gradient and hessian -- compile fixes 2023-11-20 12:06:55 +01:00
IdoAkkerman 95b0178514 Add 3D gradient and hessian 2023-11-20 11:40:34 +01:00
IdoAkkerman afacf3db45 Add 3D function 2023-11-17 17:58:20 +01:00
IdoAkkerman 4a80321420 Add 3D output 2023-11-17 17:52:35 +01:00
IdoAkkerman 9295c69249 Hdiv 3D fixes 2023-11-17 17:44:58 +01:00
IdoAkkerman 893f04967c add geom option to NURBS HDiv fecoll 2023-11-17 17:16:05 +01:00
IdoAkkerman fa410a6e02 Correct type in fespace 2023-11-17 17:15:19 +01:00
IdoAkkerman aed2687743 Add 3D HDiv elements 2023-11-17 17:03:08 +01:00
IdoAkkerman 978c0d10bc Add 3D to fespace 2023-11-17 16:41:43 +01:00
IdoAkkerman 25b540e804 Add 3D table merge 2023-11-17 16:41:06 +01:00
IdoAkkerman 9aa58cd5c2 Modify fe space to accomodate Hdiv NURBS 2023-11-17 15:38:39 +01:00
IdoAkkerman 691be01bcc Add constructors to table that merge existing tables 2023-11-17 15:38:10 +01:00
IdoAkkerman 402ed45ee4 Add Hdiv fe collection 2023-11-17 15:37:31 +01:00
IdoAkkerman 07dfcd83b9 Add 2D Hdiv NURBS basis 2023-11-17 15:37:10 +01:00
IdoAkkerman 9845dfda2c Add VectorBasis derivative interfaces 2023-11-17 15:36:42 +01:00
IdoAkkerman da5ee77e61 Add div free option 2023-11-17 14:07:06 +01:00
IdoAkkerman e1d2966e42 Add neumann bcs to nurbs_ex1 miniapp 2023-11-17 14:05:09 +01:00
IdoAkkerman 17428ce198 Add div-free option 2023-11-17 13:21:40 +01:00
IdoAkkerman e87e790215 add nurbs solenoidal miniapp for checking Hdif elemenet 2023-11-16 16:46:41 +01:00
Will Pazner f907191e58 Remove unneeded MassIntegrator member functions 2022-11-30 09:24:55 -08:00
Will Pazner 62a00562de Merge remote-tracking branch 'origin/master' into dispatch-map
# Conflicts:
#	fem/bilininteg_mass_pa.cpp
#	fem/bilininteg_mass_pa.hpp
2022-11-30 09:10:52 -08:00
Will Pazner 3316d89c63 Use 0 for default NBZ in kernel dispatch unless T::NBZ is defined 2022-11-30 09:00:28 -08:00
Will Pazner 6bf590c3ee Mass kernel dispatch 2022-11-29 21:05:43 -08:00
Will Pazner 78bf9951e3 Kernel dispatch WIP 2022-11-29 16:32:21 -08:00
Will Pazner 532060a646 Add generic dispatch table for PA kernels 2022-08-18 09:43:32 -07:00
Will Pazner 59f76ced6a Rename AddApplySpecialization to AddSpecialization 2022-08-10 21:40:56 -05:00
Will Pazner 0c2766ee76 Add dispatch table for DiffusionIntegrator::AssembleDiagonalPA 2022-08-10 16:40:19 -05:00
Will Pazner a90df38643 Calculate NBZ with constexpr pow 2022-08-10 14:15:50 -05:00
Will Pazner 407741b8e3 Add NBZ to DiffusionIntegrator kernel specialization 2022-08-10 12:32:32 -05:00
Will Pazner 3859678772 Runtime dispatch for specialized DiffusionIntegrator kernels 2022-08-10 12:10:04 -05:00
Socratis Petrides a6d4e17911 Transfer Operator as a SparseMatrix 2022-02-25 13:50:07 -08:00
Socratis Petrides bde7846b5a style 2022-02-24 17:43:11 -08:00
Socratis Petrides 01283767a6 variable order href transfer for the 'ANY_TYPE' transfer operator 2022-02-24 17:42:41 -08:00
94 changed files with 7999 additions and 2711 deletions
+14
View File
@@ -15,6 +15,9 @@
CMakeCache.txt
CMakeFiles/
# Clangd server cache
*.cache*
# Backup files
*~
@@ -272,16 +275,27 @@ miniapps/navier/*_output
miniapps/nurbs/nurbs_ex1
miniapps/nurbs/nurbs_ex1p
miniapps/nurbs/nurbs_ex3
miniapps/nurbs/nurbs_ex5
miniapps/nurbs/nurbs_ex11p
miniapps/nurbs/nurbs_ex24
miniapps/nurbs/nurbs_solenoidal
miniapps/nurbs/nurbs_printfunc
miniapps/nurbs/nurbs_patch_ex1
miniapps/nurbs/nurbs_curveint
miniapps/nurbs/refined.mesh
miniapps/nurbs/mesh.*
miniapps/nurbs/sol_?.gf
miniapps/nurbs/sol.*
miniapps/nurbs/mode_*
miniapps/nurbs/Example1*
miniapps/nurbs/Example3*
miniapps/nurbs/Example5*
miniapps/nurbs/Solenoidal*
miniapps/nurbs/ParaView
miniapps/nurbs/sin-fit.mesh
miniapps/nurbs/ex5.mesh
miniapps/nurbs/exsol.mesh
miniapps/nurbs/CurveInt
miniapps/nurbs/nurbs_naca_cmesh
miniapps/nurbs/naca-cmesh.mesh
+20
View File
@@ -11,6 +11,23 @@
Version 4.7.1 (development)
===========================
- Refactored the `ARKStepSolver` class (ARKODE interface) to use
`TimeDependentOperator::Mult` only when the associated ODE operator is
expressed in explicit form (i.e., `TimeDependentOperator::isExplicit()`),
otherwise `TimeDependentOperator::ExplicitMult` is used. A check has been
added to `ARKStepSolver` to verify that the associated ODE operator is not in
explicit form when a mass matrix solver is enabled via a call to either the
`UseMFEMMassLinearSolver` or `UseSundialsMassLinearSolver` methods. This is
because enabling a mass matrix solver assumes that F(u,k,t) = M k in the
associated ODE operator.
- Added support for custom interpolation procedure in FindPointsGSLIB.
- Added NURBS-based H(div) and H(curl) elements in 2D and 3D. Only on single
patch meshes. Only implemented for serial computations.
- Added miniapps to demonstrate the H(div) and H(curl) NURBS elements.
- Added an MFEM example for the eikonal equation. This new solver is based on
the proximal Galerkin method introduced by Keith and Surowiec.
@@ -40,6 +57,9 @@ Meshing improvements
- Added support for internal boundary elements in nonconforming meshes.
- Added ExodusII output capability. The writer can handle first-order (Pyramid5,
Wedge6, Hex8, Tet4) and second-order FE types (Pyramid14, Wedge18, Hex27, Tet10).
- The ReadCubit Genesis mesh importer has been rewritten to improve readability.
Discretization improvements
+83 -13
View File
@@ -32,7 +32,7 @@ groups_serial=(
'"examples"
"Examples:"
"examples"
"ex{,1,2,3}[0-9].cpp"'
"ex{,[1-9]}[0-9].cpp"'
# "ex1.cpp"'
'"sundials"
"SUNDIALS examples:"
@@ -58,6 +58,10 @@ groups_serial=(
"HiOp examples:"
"examples/hiop"
"ex9.cpp"'
'"moonolith"
"Moonolith examples:"
"examples/moonolith"
"ex1.cpp"'
'"pumi"
"PUMI examples:"
"examples/pumi"
@@ -66,25 +70,38 @@ groups_serial=(
'"meshing"
"Meshing miniapps:"
"miniapps/meshing"
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp mesh-quality.cpp
polar-nc.cpp reflector.cpp shaper.cpp trimmer.cpp twist.cpp
mesh-optimizer.cpp minimal-surface.cpp"'
'"adjoint"
"Adjoint miniapps:"
"miniapps/adjoint"
"cvsRoberts_ASAi_dns.cpp"'
'"autodiff"
"Autodiff miniapps:"
"miniapps/autodiff"
"seq_example.cpp seq_test.cpp"' # 'seq_test.cpp' has no sample runs
'"dpg"
"DPG miniapps:"
"miniapps/dpg"
"{acoustics,convection-diffusion,diffusion,maxwell}.cpp"'
'"gslib"
"GSLIB miniapps:"
"miniapps/gslib"
"field-diff.cpp field-interp.cpp findpts.cpp schwarz_ex1.cpp "'
# todo: miniapps/mtop
'"nurbs"
"NURBS miniapps:"
"miniapps/nurbs"
"nurbs_ex1.cpp"'
# todo: add other nurbs miniapps
# todo: miniapps/solvers (serial)
'"tools"
"Tools miniapps:"
"miniapps/tools"
"convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp
lor-transfer.cpp"'
# todo: add other tools miniapps
'"toys"
"Toys miniapps:"
"miniapps/toys"
@@ -100,7 +117,7 @@ groups_parallel=(
'"examples"
"Examples:"
"examples"
"ex{,1,2,3}[0-9]p.cpp"'
"ex{,[1-9]}[0-9]p.cpp"'
# "ex1p.cpp"'
'"sundials"
"SUNDIALS examples:"
@@ -126,6 +143,10 @@ groups_parallel=(
"HiOp examples:"
"examples/hiop"
"ex9p.cpp"'
'"moonolith"
"Moonolith examples:"
"examples/moonolith"
"ex{1,2}p.cpp"'
'"pumi"
"PUMI examples:"
"examples/pumi"
@@ -138,24 +159,41 @@ groups_parallel=(
'"meshing"
"Meshing miniapps:"
"miniapps/meshing"
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp"'
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp
fit-node-position.cpp"'
'"electromagnetics"
"Electromagnetics miniapps:"
"miniapps/electromagnetics"
"joule.cpp"'
# "{volta,tesla,joule}.cpp"' # todo: multiline sample runs
# "{joule,maxwell,tesla,volta}.cpp"' # todo: multiline sample runs
'"adjoint"
"Adjoint miniapps:"
"miniapps/adjoint"
"adjoint_advection_diffusion.cpp"'
'"autodiff"
"Autodiff miniapps:"
"miniapps/autodiff"
"par_example.cpp"'
'"dpg"
"DPG miniapps:"
"miniapps/dpg"
"p{acoustics,convection-diffusion,diffusion,maxwell}.cpp"'
'"gslib"
"GSLIB miniapps:"
"miniapps/gslib"
"pfindpts.cpp schwarz_ex1p.cpp"'
'"hdiv-linear-solver"
"H(div) linear solver miniapps:"
"miniapps/hdiv-linear-solver"
"grad_div.cpp darcy.cpp"'
# 'miniapps/hooke/hooke.cpp' has no sample runs
# todo: miniapps/mtop
# todo: miniapps/multidomain
'"navier"
"Navier miniapps:"
"miniapps/navier"
"navier_cht.cpp"'
# todo: add other navier miniapps
'"nurbs"
"NURBS miniapps:"
"miniapps/nurbs"
@@ -164,14 +202,18 @@ groups_parallel=(
"Shifted miniapps:"
"miniapps/shifted"
"distance.cpp"'
# todo: add other shifted miniapps
'"solvers"
"Solvers miniapps:"
"miniapps/solvers"
"block-solvers.cpp"'
# todo: add other solvers miniapps
# todo: miniapps/spde
'"tools"
"Tools miniapps:"
"miniapps/tools"
"convert-cd.cpp get-values.cpp load-dc.cpp"'
"convert-dc.cpp get-values.cpp load-dc.cpp"'
# todo: add other tools miniapps
'"convergence"
"Convergence tests:"
"tests/convergence"
@@ -186,7 +228,7 @@ groups_all=(
'"examples"
"Examples:"
"examples"
"ex\"{,1,2,3}[0-9]\"{,p}.cpp"'
"ex\"{,[1-9]}[0-9]\"{,p}.cpp"'
'"sundials"
"SUNDIALS examples:"
"examples/sundials"
@@ -215,10 +257,14 @@ groups_all=(
"HiOp examples:"
"examples/hiop"
"ex9.cpp ex9p.cpp"'
'"moonolith"
"Moonolith examples:"
"examples/moonolith"
"ex1.cpp ex{1,2}p.cpp"'
'"pumi"
"PUMI examples:"
"examples/pumi"
"ex1.cpp ex1p.cpp ex2.cpp ex6p.cpp"'
"ex1.cpp ex2.cpp ex1p.cpp ex6p.cpp"'
'"superlu"
"Superlu examples:"
"examples/superlu"
@@ -226,43 +272,67 @@ groups_all=(
'"meshing"
"Meshing miniapps:"
"miniapps/meshing"
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp"'
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp mesh-quality.cpp
polar-nc.cpp reflector.cpp shaper.cpp trimmer.cpp twist.cpp
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp
fit-node-position.cpp"'
'"electromagnetics"
"Electromagnetics miniapps:"
"miniapps/electromagnetics"
"joule.cpp"'
# "{volta,tesla,joule}.cpp"' # todo: multiline sample runs
# "{joule,maxwell,tesla,volta}.cpp"' # todo: multiline sample runs
'"adjoint"
"Adjoint miniapps:"
"miniapps/adjoint"
"adjoint_advection_diffusion.cpp cvsRoberts_ASAi_dns.cpp"'
"cvsRoberts_ASAi_dns.cpp adjoint_advection_diffusion.cpp"'
'"autodiff"
"Autodiff miniapps:"
"miniapps/autodiff"
"seq_example.cpp seq_test.cpp par_example.cpp"'
# 'seq_test.cpp' has no sample runs
'"dpg"
"DPG miniapps:"
"miniapps/dpg"
"{,p}{acoustics,convection-diffusion,diffusion,maxwell}.cpp"'
'"gslib"
"GSLIB miniapps:"
"miniapps/gslib"
"field-diff.cpp field-interp.cpp findpts.cpp schwarz_ex1.cpp pfindpts.cpp
schwarz_ex1p.cpp"'
'"hdiv-linear-solver"
"H(div) linear solver miniapps:"
"miniapps/hdiv-linear-solver"
"grad_div.cpp darcy.cpp"'
# 'miniapps/hooke/hooke.cpp' has no sample runs
# todo: miniapps/mtop
# todo: miniapps/multidomain
'"navier"
"Navier miniapps:"
"miniapps/navier"
"navier_cht.cpp"'
# todo: add other navier miniapps
'"nurbs"
"NURBS miniapps:"
"miniapps/nurbs"
"nurbs_ex1.cpp nurbs_ex1p.cpp nurbs_ex11p.cpp"'
# todo: add other nurbs miniapps
'"shifted"
"Shifted miniapps:"
"miniapps/shifted"
"distance.cpp"'
# todo: add other shifted miniapps
'"solvers"
"Solvers miniapps:"
"miniapps/solvers"
"block-solvers.cpp"'
# todo: add other solvers miniapps
# todo: miniapps/spde
'"tools"
"Tools miniapps:"
"miniapps/tools"
"convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp
lor-transfer.cpp"'
# todo: add other tools miniapps
'"toys"
"Toys miniapps:"
"miniapps/toys"
@@ -386,7 +456,7 @@ function help_message()
mfem_config [${mfem_config}]
Set MFEM configuration options
make [${make}], mpiexec [${mpiexec}], mpiexec_np [${mpiexec_np}]
Their values can also set using the respective uppercase environment
Their values can also be set using the respective uppercase environment
variable
mfem_build_dir [${mfem_build_dir}]
Same as '-d': set this variable to something different from <mfem_dir>
+3 -3
View File
@@ -18,9 +18,9 @@ elements
boundary
4
1 1 0 1
1 1 2 3
1 1 3 0
1 1 1 2
2 1 2 3
3 1 3 0
4 1 1 2
edges
4
+2 -1
View File
@@ -1049,7 +1049,8 @@ RECURSIVE = NO
EXCLUDE = @MFEM_SOURCE_DIR@/config/_config.hpp \
@MFEM_SOURCE_DIR@/config/get_hypre_version.cpp \
@MFEM_SOURCE_DIR@/general/tinyxml2.h \
@MFEM_SOURCE_DIR@/general/tinyxml2.cpp
@MFEM_SOURCE_DIR@/general/tinyxml2.cpp \
@MFEM_SOURCE_DIR@/linalg/lapack.hpp
# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
# directories that are symbolic links (a Unix file system feature) are excluded
+15
View File
@@ -182,6 +182,21 @@ namespace mfem {
* <a class="el" href="examples_2superlu_2ex1p_8cpp_source.html">1p</a>,
* demonstrating the use of MFEM's \link superlu.hpp SuperLU integration\endlink.
*
* <H4>NURBS Examples</H4>
* - Variants of Examples
* <a class="el" href="nurbs__ex1_8cpp_source.html">1</a>,
* <a class="el" href="nurbs__ex1p_8cpp_source.html">1p</a>,
* <a class="el" href="nurbs__ex3_8cpp_source.html">3</a>,
* <a class="el" href="nurbs__ex5_8cpp_source.html">5</a>,
* <a class="el" href="nurbs__ex11p_8cpp_source.html">11p</a>, and
* <a class="el" href="nurbs__ex24_8cpp_source.html">24</a>,
* demonstrating howto perform NURBS-based Isogeometric Analysis.
* - Variant of Example <a class="el" href="nurbs__patch__ex1_8cpp_source.html">1</a>: demonstrates the use of patch integration
* - <a class="el" href="nurbs__solenoidal_8cpp_source.html">NURBS Divergence-free</a>: solve a solenoidal vector projection with NURBS-based H(div) elements
* - <a class="el" href="nurbs__curveint_8cpp_source.html">NURBS Interpolation</a>: NURBS interpolation of given geometry
* - <a class="el" href="nurbs__naca__cmesh_8cpp_source.html">NURBS NACA Mesher</a>: generate NURBS based mesh around a NACA foil
* - <a class="el" href="nurbs__printfunc_8cpp_source.html">NURBS Printer</a>: print the NURBS-basis
*
* <H3>Miniapps</H3>
* - <a class="el" href="volta_8cpp_source.html">Volta</a>: simple electrostatics simulation code
* - <a class="el" href="tesla_8cpp_source.html">Tesla</a>: simple magnetostatics simulation code
+1
View File
@@ -96,6 +96,7 @@ public:
{
Vector w_glob(width);
pfes.Dof_TrueDof_Matrix()->MultTranspose(w, w_glob);
w_glob.HostReadWrite(); // read+write -> can use w_glob(i) (non-const)
for (int i = 0; i < width; i++) { grad(0, i) = w_glob(i); }
}
+16 -3
View File
@@ -31,11 +31,21 @@ include_directories(BEFORE ${PROJECT_BINARY_DIR})
add_custom_target(test_sundials
${CMAKE_CTEST_COMMAND} -R sundials USES_TERMINAL)
# Add one executable per cpp file, adding "sundials_" as prefix. Sets
# "test_sundials" as a target that depends on the given examples.
# Add one executable per cpp file, adding "sundials_" as prefix so the CMake
# target is unique from those in the non-SUNDIALS examples. Also sets
# "test_sundials" as a target that depends on the given SUNDIALS examples.
set(PFX sundials_)
add_mfem_examples(SUNDIALS_EXAMPLES_SRCS ${PFX} "" test_sundials)
# Remove "sundials_" prefix from exectuable name for consistency with GNU build
# system.
foreach(SRC_FILE ${SUNDIALS_EXAMPLES_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TARGET_NAME "${PFX}${SRC_FILENAME}")
string(REPLACE ${PFX} "" EXE_NAME ${TARGET_NAME})
set_target_properties(${TARGET_NAME} PROPERTIES OUTPUT_NAME ${EXE_NAME})
endforeach()
# Testing.
# The SUNDIALS tests can be run separately using the target "test_sundials"
# which builds the examples and runs:
@@ -51,7 +61,10 @@ if (MFEM_ENABLE_TESTING)
set(EX10_COMMON_OPTS -m ../../data/beam-quad.mesh -o 2 -s 5 -dt 0.15 -tf 6 -vs 10)
set(EX10_TEST_OPTS ${EX10_COMMON_OPTS} -r 2)
set(EX10P_TEST_OPTS ${EX10_COMMON_OPTS} -rp 1)
# Example 16: use the default options
# Example 16: test ARKODE with implicit time stepping using mass form
set(EX16_COMMON_OPTS -s 15)
set(EX16_TEST_OPTS ${EX16_COMMON_OPTS})
set(EX16P_TEST_OPTS ${EX16_COMMON_OPTS})
# Add the tests: one test per source file.
foreach(SRC_FILE ${SUNDIALS_EXAMPLES_SRCS})
+3 -1
View File
@@ -1,7 +1,9 @@
// MFEM Example 10
// SUNDIALS Modification
//
// Compile with: make ex10
// Compile with:
// make ex10 (GNU make)
// make sundials_ex10 (CMake)
//
// Sample runs:
// ex10 -m ../../data/beam-quad.mesh -r 2 -o 2 -s 12 -dt 0.15 -vs 10
+3 -1
View File
@@ -1,7 +1,9 @@
// MFEM Example 10 - Parallel Version
// SUNDIALS Modification
//
// Compile with: make ex10p
// Compile with:
// make ex10p (GNU make)
// make sundials_ex10p (CMake)
//
// Sample runs:
// mpirun -np 4 ex10p -m ../../data/beam-quad.mesh -rp 1 -o 2 -s 12 -dt 0.15 -vs 10
+256 -163
View File
@@ -1,15 +1,21 @@
// MFEM Example 16
// SUNDIALS Modification
//
// Compile with: make ex16
// Compile with:
// make ex16 (GNU make)
// make sundials_ex16 (CMake)
//
// Sample runs: ex16
// ex16 -m ../../data/inline-tri.mesh
// ex16 -m ../../data/disc-nurbs.mesh -tf 2
// ex16 -s 12 -a 0.0 -k 1.0
// ex16 -s 15 -a 0.0 -k 1.0
// ex16 -s 8 -a 1.0 -k 0.0 -dt 1e-4 -tf 5e-2 -vs 25
// ex16 -s 11 -a 1.0 -k 0.0 -dt 1e-4 -tf 5e-2 -vs 25
// ex16 -s 9 -a 0.5 -k 0.5 -o 4 -dt 1e-4 -tf 2e-2 -vs 25
// ex16 -s 12 -a 0.5 -k 0.5 -o 4 -dt 1e-4 -tf 2e-2 -vs 25
// ex16 -s 10 -dt 1.0e-4 -tf 4.0e-2 -vs 40
// ex16 -s 13 -dt 1.0e-4 -tf 4.0e-2 -vs 40
// ex16 -m ../../data/fichera-q2.mesh
// ex16 -m ../../data/escher.mesh
// ex16 -m ../../data/beam-tet.mesh -tf 10 -dt 0.1
@@ -37,75 +43,102 @@
using namespace std;
using namespace mfem;
/** After spatial discretization, the conduction model can be written as:
/** After spatial discretization, the conduction model is expressed as
*
* du/dt = M^{-1}(-Ku)
* M du/dt = - K(u) u
*
* where u is the vector representing the temperature, M is the mass matrix,
* and K is the diffusion operator with diffusivity depending on u:
* and K(u) is the diffusion operator with diffusivity depending on u:
* (\kappa + \alpha u).
*
* Class ConductionOperator represents the right-hand side of the above ODE.
* Class ConductionOperatorOperator represents the above ODE operator in the
* general form F(u, k, t) = G(u, t) where
*
* 1. F(u, du/dt, t) = du/dt (ODE is expressed in EXPLICIT form)
* G(u, t) = - inv(M) K(u) u
* 2. F(u, du/dt, t) = M du/dt (ODE is expressed in IMPLICIT form)
* G(u, t) = - K(u) u
*/
class ConductionOperator : public TimeDependentOperator
{
protected:
FiniteElementSpace &fespace;
Array<int> ess_tdof_list; // this list remains empty for pure Neumann b.c.
BilinearForm *M;
BilinearForm *K;
BilinearForm M;
SparseMatrix Mmat;
SparseMatrix Mmat, Kmat;
SparseMatrix *T; // T = M + dt K
const real_t alpha, kappa;
std::unique_ptr<BilinearForm> K;
SparseMatrix Kmat;
std::unique_ptr<SparseMatrix> T; // T = M + gam K(u)
CGSolver M_solver; // Krylov solver for inverting the mass matrix M
DSmoother M_prec; // Preconditioner for the mass matrix M
CGSolver T_solver; // Implicit solver for T = M + dt K
CGSolver T_solver; // Implicit solver for T = M + gam K(u)
DSmoother T_prec; // Preconditioner for the implicit solver
double alpha, kappa;
mutable Vector z; // auxiliary vector
public:
ConductionOperator(FiniteElementSpace &f, double alpha, double kappa,
const Vector &u);
virtual void Mult(const Vector &u, Vector &du_dt) const;
ConductionOperator(FiniteElementSpace &f, const real_t alpha,
const real_t kappa, const Vector &u,
const Type &ode_expression_type);
/** Solve the Backward-Euler equation: k = f(u + dt*k, t), for the unknown k.
This is the only requirement for high-order SDIRK implicit integration.*/
virtual void ImplicitSolve(const double dt, const Vector &u, Vector &k);
// Compute K(u_n) for use as an approximation in - K(u) u
void SetConductionTensor(const Vector &u);
/// Custom Jacobian system solver for the SUNDIALS time integrators.
/** For the ODE system represented by ConductionOperator
/** Compute G(u, t) as defined in the IMPLICIT expression form of the ODE
operator, i.e., @a v = - K(u_n) @a u. Note that K(u_n) is an
approximation to K(u). */
void ExplicitMult(const Vector &u, Vector &v) const override;
M du/dt = -K(u),
/** Solve for k in F(u, k, t) = G(u, t) for either EXPLICIT or IMPLICIT
expression forms of the ODE operator, i.e., @a k = - inv(M) K(u_n) @a u.
Note that K(u_n) is an approximation to K(u). */
void Mult(const Vector &u, Vector &k) const override;
this class facilitates the solution of linear systems of the form
/** Solve for k in F(u + gam*k, k, t) = G(u + gam*k, t) for either EXPLICIT
or IMPLICIT expression forms of the ODE operator, i.e.,
[ M + @a gam K(u_n) ] @a k = - K(u_n) @a u . Note that K(u_n) is an
approximation to K(u). */
void ImplicitSolve(const real_t gam, const Vector &u, Vector &k) override;
(M + γK) y = M b,
/** Setup to solve for dk in [dF/dk + gam*dF/du - gam*dG/du] dk = G - F for
either EXPLICIT or IMPLICIT expression forms of the ODE operator, i.e.,
[M - @a gam Jf(u)] dk = G - F, where Jf(u) is an approximation of the
Jacobian of -K(u) u. The approximation chosen here is Jf(u) = -K(u_n). */
int SUNImplicitSetup(const Vector &u, const Vector &fu, int jok, int *jcur,
real_t gam) override;
for given b, u (not used), and γ = GetTimeStep(). */
/** Solve for @a dk in the system in SUNImplicitSetup to the given tolerance,
with the residual @a r providing either
1. @a r = G - F = inv(M) f(u) - k (EXPLICIT expression form)
1. @a r = G - F = f(u) - M k (IMPLICIT expression form)
*/
int SUNImplicitSolve(const Vector &r, Vector &dk, real_t tol) override;
/** Setup the system (M + dt K) x = M b. This method is used by the implicit
SUNDIALS solvers. */
virtual int SUNImplicitSetup(const Vector &x, const Vector &fx,
int jok, int *jcur, double gamma);
int SUNMassSetup() override;
/** Solve the system (M + dt K) x = M b. This method is used by the implicit
SUNDIALS solvers. */
virtual int SUNImplicitSolve(const Vector &b, Vector &x, double tol);
int SUNMassSolve(const Vector &b, Vector &x, real_t tol) override;
/// Update the diffusion BilinearForm K using the given true-dof vector `u`.
void SetParameters(const Vector &u);
virtual ~ConductionOperator();
int SUNMassMult(const Vector &x, Vector &v) override;
};
double InitialTemperature(const Vector &x);
real_t InitialTemperature(const Vector &x)
{
if (x.Norml2() < 0.5)
{
return 2.0;
}
else
{
return 1.0;
}
}
int main(int argc, char *argv[])
{
@@ -117,16 +150,16 @@ int main(int argc, char *argv[])
int ref_levels = 2;
int order = 2;
int ode_solver_type = 9; // CVODE implicit BDF
double t_final = 0.5;
double dt = 1.0e-2;
double alpha = 1.0e-2;
double kappa = 0.5;
real_t t_final = 0.5;
real_t dt = 1.0e-2;
real_t alpha = 1.0e-2;
real_t kappa = 0.5;
bool visualization = true;
bool visit = false;
int vis_steps = 5;
// Relative and absolute tolerances for CVODE and ARKODE.
const double reltol = 1e-4, abstol = 1e-4;
const real_t reltol = 1e-4, abstol = 1e-4;
int precision = 8;
cout.precision(precision);
@@ -151,7 +184,10 @@ int main(int argc, char *argv[])
"9 - CVODE (implicit BDF),\n\t"
"10 - ARKODE (default explicit),\n\t"
"11 - ARKODE (explicit Fehlberg-6-4-5),\n\t"
"12 - ARKODE (default impicit).");
"12 - ARKODE (default implicit),\n\t"
"13 - ARKODE (default explicit with MFEM mass solve),\n\t"
"14 - ARKODE (explicit Fehlberg-6-4-5 with MFEM mass solve),\n\t"
"15 - ARKODE (default implicit with MFEM mass solve).");
args.AddOption(&t_final, "-tf", "--t-final",
"Final time; start time is 0.");
args.AddOption(&dt, "-dt", "--time-step",
@@ -174,16 +210,13 @@ int main(int argc, char *argv[])
args.PrintUsage(cout);
return 1;
}
if (ode_solver_type < 1 || ode_solver_type > 12)
{
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
return 3;
}
args.PrintOptions(cout);
bool use_mass_solver = ode_solver_type >= 13;
// 2. Read the mesh from the given mesh file. We can handle triangular,
// quadrilateral, tetrahedral and hexahedral meshes with the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
std::unique_ptr<Mesh> mesh(new Mesh(mesh_file, 1, 1));
int dim = mesh->Dimension();
// 3. Refine the mesh to increase the resolution. In this example we do
@@ -197,7 +230,7 @@ int main(int argc, char *argv[])
// 4. Define the vector finite element space representing the current and the
// initial temperature, u_ref.
H1_FECollection fe_coll(order, dim);
FiniteElementSpace fespace(mesh, &fe_coll);
FiniteElementSpace fespace(mesh.get(), &fe_coll);
int fe_size = fespace.GetTrueVSize();
cout << "Number of temperature unknowns: " << fe_size << endl;
@@ -211,8 +244,17 @@ int main(int argc, char *argv[])
Vector u;
u_gf.GetTrueDofs(u);
// 6. Initialize the conduction operator and the visualization.
ConductionOperator oper(fespace, alpha, kappa, u);
// 6. Initialize the conduction ODE operator and the visualization.
ConductionOperator::Type ode_expression_type;
if (use_mass_solver)
{
ode_expression_type = ConductionOperator::Type::IMPLICIT;
}
else
{
ode_expression_type = ConductionOperator::Type::EXPLICIT;
}
ConductionOperator oper(fespace, alpha, kappa, u, ode_expression_type);
u_gf.SetFromTrueDofs(u);
{
@@ -224,7 +266,7 @@ int main(int argc, char *argv[])
u_gf.Save(osol);
}
VisItDataCollection visit_dc("Example16", mesh);
VisItDataCollection visit_dc("Example16", mesh.get());
visit_dc.RegisterField("temperature", &u_gf);
if (visit)
{
@@ -258,52 +300,75 @@ int main(int argc, char *argv[])
}
// 7. Define the ODE solver used for time integration.
double t = 0.0;
ODESolver *ode_solver = NULL;
CVODESolver *cvode = NULL;
ARKStepSolver *arkode = NULL;
real_t t = 0.0;
std::unique_ptr<ODESolver> ode_solver;
switch (ode_solver_type)
{
// MFEM explicit methods
case 1: ode_solver = new ForwardEulerSolver; break;
case 2: ode_solver = new RK2Solver(0.5); break; // midpoint method
case 3: ode_solver = new RK3SSPSolver; break;
case 4: ode_solver = new RK4Solver; break;
case 1: ode_solver = std::make_unique<ForwardEulerSolver>(); break;
case 2: ode_solver = std::make_unique<RK2Solver>(0.5); break; // midpoint method
case 3: ode_solver = std::make_unique<RK3SSPSolver>(); break;
case 4: ode_solver = std::make_unique<RK4Solver>(); break;
// MFEM implicit L-stable methods
case 5: ode_solver = new BackwardEulerSolver; break;
case 6: ode_solver = new SDIRK23Solver(2); break;
case 7: ode_solver = new SDIRK33Solver; break;
case 5: ode_solver = std::make_unique<BackwardEulerSolver>(); break;
case 6: ode_solver = std::make_unique<SDIRK23Solver>(2); break;
case 7: ode_solver = std::make_unique<SDIRK33Solver>(); break;
// CVODE
case 8:
cvode = new CVODESolver(CV_ADAMS);
cvode->Init(oper);
cvode->SetSStolerances(reltol, abstol);
cvode->SetMaxStep(dt);
ode_solver = cvode; break;
case 9:
cvode = new CVODESolver(CV_BDF);
{
int cvode_solver_type;
if (ode_solver_type == 8)
{
cvode_solver_type = CV_ADAMS;
}
else
{
cvode_solver_type = CV_BDF;
}
std::unique_ptr<CVODESolver> cvode(new CVODESolver(cvode_solver_type));
cvode->Init(oper);
cvode->SetSStolerances(reltol, abstol);
cvode->SetMaxStep(dt);
ode_solver = cvode; break;
ode_solver = std::move(cvode);
break;
}
// ARKODE
case 10:
case 11:
arkode = new ARKStepSolver(ARKStepSolver::EXPLICIT);
case 12:
case 13:
case 14:
case 15:
{
ARKStepSolver::Type arkode_solver_type;
if (ode_solver_type == 12 || ode_solver_type == 15)
{
arkode_solver_type = ARKStepSolver::IMPLICIT;
}
else
{
arkode_solver_type = ARKStepSolver::EXPLICIT;
}
std::unique_ptr<ARKStepSolver> arkode(
new ARKStepSolver(arkode_solver_type));
arkode->Init(oper);
arkode->SetSStolerances(reltol, abstol);
arkode->SetMaxStep(dt);
if (ode_solver_type == 11)
if (ode_solver_type == 11 || ode_solver_type == 14)
{
arkode->SetERKTableNum(ARKODE_FEHLBERG_13_7_8);
}
ode_solver = arkode; break;
case 12:
arkode = new ARKStepSolver(ARKStepSolver::IMPLICIT);
arkode->Init(oper);
arkode->SetSStolerances(reltol, abstol);
arkode->SetMaxStep(dt);
ode_solver = arkode; break;
if (use_mass_solver)
{
arkode->UseMFEMMassLinearSolver(SUNFALSE);
}
ode_solver = std::move(arkode);
break;
}
default:
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
return 3;
}
// Initialize MFEM integrators, SUNDIALS integrators are initialized above
@@ -311,8 +376,14 @@ int main(int argc, char *argv[])
// Since we want to update the diffusion coefficient after every time step,
// we need to use the "one-step" mode of the SUNDIALS solvers.
if (cvode) { cvode->SetStepMode(CV_ONE_STEP); }
if (arkode) { arkode->SetStepMode(ARK_ONE_STEP); }
if (CVODESolver* cvode = dynamic_cast<CVODESolver*>(ode_solver.get()))
{
cvode->SetStepMode(CV_ONE_STEP);
}
else if (ARKStepSolver* arkode = dynamic_cast<ARKStepSolver*>(ode_solver.get()))
{
arkode->SetStepMode(ARK_ONE_STEP);
}
// 8. Perform time-integration (looping over the time iterations, ti, with a
// time-step dt).
@@ -323,7 +394,7 @@ int main(int argc, char *argv[])
bool last_step = false;
for (int ti = 1; !last_step; ti++)
{
double dt_real = min(dt, t_final - t);
real_t dt_real = min(dt, t_final - t);
// Note that since we are using the "one-step" mode of the SUNDIALS
// solvers, they will, generally, step over the final time and will not
@@ -337,8 +408,14 @@ int main(int argc, char *argv[])
if (last_step || (ti % vis_steps) == 0)
{
cout << "step " << ti << ", t = " << t << endl;
if (cvode) { cvode->PrintInfo(); }
if (arkode) { arkode->PrintInfo(); }
if (CVODESolver* cvode = dynamic_cast<CVODESolver*>(ode_solver.get()))
{
cvode->PrintInfo();
}
else if (ARKStepSolver* arkode = dynamic_cast<ARKStepSolver*>(ode_solver.get()))
{
arkode->PrintInfo();
}
u_gf.SetFromTrueDofs(u);
if (visualization)
@@ -353,137 +430,153 @@ int main(int argc, char *argv[])
visit_dc.Save();
}
}
oper.SetParameters(u);
oper.SetConductionTensor(u);
}
tic_toc.Stop();
cout << "Done, " << tic_toc.RealTime() << "s." << endl;
// 9. Save the final solution. This output can be viewed later using GLVis:
// "glvis -m ex16.mesh -g ex16-final.gf".
{
ofstream osol("ex16-final.gf");
osol.precision(precision);
u_gf.Save(osol);
}
// 10. Free the used memory.
delete ode_solver;
delete mesh;
u_gf.Save("ex16-final.gf", precision);
return 0;
}
ConductionOperator::ConductionOperator(FiniteElementSpace &f, double al,
double kap, const Vector &u)
: TimeDependentOperator(f.GetTrueVSize(), 0.0), fespace(f), M(NULL), K(NULL),
T(NULL), z(height)
ConductionOperator::ConductionOperator(FiniteElementSpace &fes,
const real_t alpha, const real_t kappa,
const Vector &u,
const Type &ode_expression_type)
: TimeDependentOperator(fes.GetTrueVSize(), 0.0, ode_expression_type),
fespace(fes), alpha(alpha), kappa(kappa), M(&fespace), z(height)
{
const double rel_tol = 1e-8;
// specify a relative tolerance for all solves with MFEM integrators
const real_t rel_tol = 1e-8;
M = new BilinearForm(&fespace);
M->AddDomainIntegrator(new MassIntegrator());
M->Assemble();
M->FormSystemMatrix(ess_tdof_list, Mmat);
M.AddDomainIntegrator(new MassIntegrator());
M.Assemble();
M.FormSystemMatrix(ess_tdof_list, Mmat);
M_solver.iterative_mode = false;
M_solver.SetRelTol(rel_tol);
M_solver.SetRelTol(rel_tol); // will be overwritten with SUNDIALS integrators
M_solver.SetAbsTol(0.0);
M_solver.SetMaxIter(50);
M_solver.SetPrintLevel(0);
M_solver.SetPreconditioner(M_prec);
M_solver.SetOperator(Mmat);
alpha = al;
kappa = kap;
T_solver.iterative_mode = false;
T_solver.SetRelTol(rel_tol);
T_solver.SetRelTol(rel_tol); // will be overwritten with SUNDIALS integrators
T_solver.SetAbsTol(0.0);
T_solver.SetMaxIter(100);
T_solver.SetPrintLevel(0);
T_solver.SetPreconditioner(T_prec);
SetParameters(u);
SetConductionTensor(u);
}
void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
{
// Compute:
// du_dt = M^{-1}*-K(u)
// for du_dt
Kmat.Mult(u, z);
z.Neg(); // z = -z
M_solver.Mult(z, du_dt);
}
void ConductionOperator::ImplicitSolve(const double dt,
const Vector &u, Vector &du_dt)
{
// Solve the equation:
// du_dt = M^{-1}*[-K(u + dt*du_dt)]
// for du_dt
if (T) { delete T; }
T = Add(1.0, Mmat, dt, Kmat);
T_solver.SetOperator(*T);
Kmat.Mult(u, z);
z.Neg();
T_solver.Mult(z, du_dt);
}
void ConductionOperator::SetParameters(const Vector &u)
void ConductionOperator::SetConductionTensor(const Vector &u)
{
// Compute K(u_n).
GridFunction u_alpha_gf(&fespace);
u_alpha_gf.SetFromTrueDofs(u);
for (int i = 0; i < u_alpha_gf.Size(); i++)
{
u_alpha_gf(i) = kappa + alpha*u_alpha_gf(i);
}
delete K;
K = new BilinearForm(&fespace);
GridFunctionCoefficient u_coeff(&u_alpha_gf);
K = std::make_unique<BilinearForm>(&fespace);
K->AddDomainIntegrator(new DiffusionIntegrator(u_coeff));
K->Assemble();
K->FormSystemMatrix(ess_tdof_list, Kmat);
}
int ConductionOperator::SUNImplicitSetup(const Vector &x,
const Vector &fx, int jok, int *jcur,
double gamma)
void ConductionOperator::ExplicitMult(const Vector &u, Vector &v) const
{
// Setup the ODE Jacobian T = M + gamma K.
if (T) { delete T; }
T = Add(1.0, Mmat, gamma, Kmat);
// Compute - K(u_n) u.
Kmat.Mult(u, v);
v.Neg();
}
void ConductionOperator::Mult(const Vector &u, Vector &k) const
{
// Compute - inv(M) K(u_n) u.
ExplicitMult(u, z);
M_solver.Mult(z, k);
}
void ConductionOperator::ImplicitSolve(const real_t gam, const Vector &u,
Vector &k)
{
// Solve for k in M k = - K(u_n) [u + gam*k].
ExplicitMult(u, z);
T = std::unique_ptr<SparseMatrix>(Add(1.0, Mmat, gam, Kmat));
T_solver.SetOperator(*T);
*jcur = 1;
return (0);
T_solver.Mult(z, k);
}
int ConductionOperator::SUNImplicitSolve(const Vector &b, Vector &x, double tol)
int ConductionOperator::SUNImplicitSetup(const Vector &u, const Vector &fu,
int jok, int *jcur, real_t gam)
{
// Solve the system A x = z => (M - gamma K) x = M b.
Mmat.Mult(b, z);
T_solver.Mult(z, x);
return (0);
// Compute T = M + gamma K(u_n).
T = std::unique_ptr<SparseMatrix>(Add(1.0, Mmat, gam, Kmat));
T_solver.SetOperator(*T);
*jcur = SUNTRUE; // this should eventually only be set true if K(u) is used
return SUNLS_SUCCESS;
}
ConductionOperator::~ConductionOperator()
int ConductionOperator::SUNImplicitSolve(const Vector &r, Vector &dk,
real_t tol)
{
delete T;
delete M;
delete K;
}
double InitialTemperature(const Vector &x)
{
if (x.Norml2() < 0.5)
// Solve the system [M + gamma K(u_n)] dk = - K(u_n) u - M k.
// What value r is providing depends on the ODE expression form:
// EXPLICIT form: r = -inv(M) K(u_n) u - k
// IMPLICIT form: r = -K(u_n) u - M k
T_solver.SetRelTol(tol);
if (isExplicit())
{
return 2.0;
Mmat.Mult(r, z);
T_solver.Mult(z, dk);
}
else
{
return 1.0;
T_solver.Mult(r, dk);
}
if (T_solver.GetConverged())
{
return SUNLS_SUCCESS;
}
else
{
return SUNLS_CONV_FAIL;
}
}
int ConductionOperator::SUNMassSetup()
{
// Do nothing b/c mass solver was setup in constructor.
return SUNLS_SUCCESS;
}
int ConductionOperator::SUNMassSolve(const Vector &b, Vector &x, real_t tol)
{
// Solve the system M x = b.
M_solver.SetRelTol(tol);
M_solver.Mult(b, x);
if (M_solver.GetConverged())
{
return SUNLS_SUCCESS;
}
else
{
return SUNLS_CONV_FAIL;
}
}
int ConductionOperator::SUNMassMult(const Vector &x, Vector &v)
{
// Compute M x.
Mmat.Mult(x, v);
return SUNLS_SUCCESS;
}
+285 -188
View File
@@ -1,16 +1,22 @@
// MFEM Example 16 - Parallel Version
// SUNDIALS Modification
//
// Compile with: make ex16p
// Compile with:
// make ex16p (GNU make)
// make sundials_ex16p (CMake)
//
// Sample runs:
// mpirun -np 4 ex16p
// mpirun -np 4 ex16p -m ../../data/inline-tri.mesh
// mpirun -np 4 ex16p -m ../../data/disc-nurbs.mesh -tf 2
// mpirun -np 4 ex16p -s 12 -a 0.0 -k 1.0
// mpirun -np 4 ex16p -s 15 -a 0.0 -k 1.0
// mpirun -np 4 ex16p -s 8 -a 1.0 -k 0.0 -dt 4e-6 -tf 2e-2 -vs 50
// mpirun -np 4 ex16p -s 11 -a 1.0 -k 0.0 -dt 4e-6 -tf 2e-2 -vs 50
// mpirun -np 8 ex16p -s 9 -a 0.5 -k 0.5 -o 4 -dt 8e-6 -tf 2e-2 -vs 50
// mpirun -np 8 ex16p -s 12 -a 0.5 -k 0.5 -o 4 -dt 8e-6 -tf 2e-2 -vs 50
// mpirun -np 4 ex16p -s 10 -dt 2.0e-4 -tf 4.0e-2
// mpirun -np 4 ex16p -s 13 -dt 2.0e-4 -tf 4.0e-2
// mpirun -np 16 ex16p -m ../../data/fichera-q2.mesh
// mpirun -np 16 ex16p -m ../../data/escher-p2.mesh
// mpirun -np 8 ex16p -m ../../data/beam-tet.mesh -tf 10 -dt 0.1
@@ -38,66 +44,102 @@
using namespace std;
using namespace mfem;
/** After spatial discretization, the conduction model can be written as:
/** After spatial discretization, the conduction model is expressed as
*
* du/dt = M^{-1}(-Ku)
* M du/dt = - K(u) u
*
* where u is the vector representing the temperature, M is the mass matrix,
* and K is the diffusion operator with diffusivity depending on u:
* and K(u) is the diffusion operator with diffusivity depending on u:
* (\kappa + \alpha u).
*
* Class ConductionOperator represents the right-hand side of the above ODE.
* Class ConductionOperatorOperator represents the above ODE operator in the
* general form F(u, k, t) = G(u, t) where either
*
* 1. F(u, du/dt, t) = du/dt (ODE is expressed in EXPLICIT form)
* G(u, t) = - inv(M) K(u) u
* 2. F(u, du/dt, t) = M du/dt (ODE is expressed in IMPLICIT form)
* G(u, t) = - K(u) u
*/
class ConductionOperator : public TimeDependentOperator
{
protected:
ParFiniteElementSpace &fespace;
Array<int> ess_tdof_list; // this list remains empty for pure Neumann b.c.
ParBilinearForm *M;
ParBilinearForm *K;
ParBilinearForm M;
HypreParMatrix Mmat;
const real_t alpha, kappa;
std::unique_ptr<BilinearForm> K;
HypreParMatrix Kmat;
HypreParMatrix *T; // T = M + dt K
double current_dt;
CGSolver M_solver; // Krylov solver for inverting the mass matrix M
HypreSmoother M_prec; // Preconditioner for the mass matrix M
std::unique_ptr<HypreParMatrix> T; // T = M + gam K(u)
CGSolver T_solver; // Implicit solver for T = M + dt K
HypreSmoother T_prec; // Preconditioner for the implicit solver
CGSolver M_solver; // Krylov solver for inverting the mass matrix M
HypreSmoother M_prec; // Preconditioner for the mass matrix M
double alpha, kappa;
CGSolver T_solver; // Implicit solver for T = M + gam K(u)
HypreSmoother T_prec; // Preconditioner for the implicit solver
mutable Vector z; // auxiliary vector
public:
ConductionOperator(ParFiniteElementSpace &f, double alpha, double kappa,
const Vector &u);
virtual void Mult(const Vector &u, Vector &du_dt) const;
ConductionOperator(ParFiniteElementSpace &f, const real_t alpha,
const real_t kappa, const Vector &u,
const Type &ode_expression_type);
/** Solve the Backward-Euler equation: k = f(u + dt*k, t), for the unknown k.
This is the only requirement for high-order SDIRK implicit integration.*/
virtual void ImplicitSolve(const double dt, const Vector &u, Vector &k);
// Compute K(u_n) for use as an approximation in - K(u) u
void SetConductionTensor(const Vector &u);
/** Setup the system (M + dt K) x = M b. This method is used by the implicit
SUNDIALS solvers. */
virtual int SUNImplicitSetup(const Vector &x, const Vector &fx,
int jok, int *jcur, double gamma);
/** Compute G(u, t) as defined in the IMPLICIT expression form of the ODE
operator, i.e., @a v = - K(u_n) @a u. Note that K(u_n) is an
approximation to K(u). */
void ExplicitMult(const Vector &u, Vector &v) const override;
/** Solve the system (M + dt K) x = M b. This method is used by the implicit
SUNDIALS solvers. */
virtual int SUNImplicitSolve(const Vector &b, Vector &x, double tol);
/** Solve for k in F(u, k, t) = G(u, t) for either EXPLICIT or IMPLICIT
expression forms of the ODE operator, i.e., @a k = - inv(M) K(u_n) @a u.
Note that K(u_n) is an approximation to K(u). */
void Mult(const Vector &u, Vector &k) const override;
/// Update the diffusion BilinearForm K using the given true-dof vector `u`.
void SetParameters(const Vector &u);
/** Solve for k in F(u + gam*k, k, t) = G(u + gam*k, t) for either EXPLICIT
or IMPLICIT expression forms of the ODE operator, i.e.,
[ M + @a gam K(u_n) ] @a k = - K(u_n) @a u . Note that K(u_n) is an
approximation to K(u). */
void ImplicitSolve(const real_t gam, const Vector &u, Vector &k) override;
virtual ~ConductionOperator();
/** Setup to solve for dk in [dF/dk + gam*dF/du - gam*dG/du] dk = G - F for
either EXPLICIT or IMPLICIT expression forms of the ODE operator, i.e.,
[M - @a gam Jf(u)] dk = G - F, where Jf(u) is an approximation of the
Jacobian of -K(u) u. The approximation chosen here is Jf(u) = -K(u_n). */
int SUNImplicitSetup(const Vector &u, const Vector &fu, int jok, int *jcur,
real_t gam) override;
/** Solve for @a dk in the system in SUNImplicitSetup to the given tolerance,
with the residual @a r providing either
1. @a r = G - F = inv(M) f(u) - k (EXPLICIT expression form)
1. @a r = G - F = f(u) - M k (IMPLICIT expression form)
*/
int SUNImplicitSolve(const Vector &r, Vector &dk, real_t tol) override;
int SUNMassSetup() override;
int SUNMassSolve(const Vector &b, Vector &x, real_t tol) override;
int SUNMassMult(const Vector &x, Vector &v) override;
};
double InitialTemperature(const Vector &x);
real_t InitialTemperature(const Vector &x)
{
if (x.Norml2() < 0.5)
{
return 2.0;
}
else
{
return 1.0;
}
}
int main(int argc, char *argv[])
{
@@ -114,16 +156,16 @@ int main(int argc, char *argv[])
int par_ref_levels = 1;
int order = 2;
int ode_solver_type = 9; // CVODE implicit BDF
double t_final = 0.5;
double dt = 1.0e-2;
double alpha = 1.0e-2;
double kappa = 0.5;
real_t t_final = 0.5;
real_t dt = 1.0e-2;
real_t alpha = 1.0e-2;
real_t kappa = 0.5;
bool visualization = true;
bool visit = false;
int vis_steps = 5;
// Relative and absolute tolerances for CVODE and ARKODE.
const double reltol = 1e-4, abstol = 1e-4;
const real_t reltol = 1e-4, abstol = 1e-4;
int precision = 8;
cout.precision(precision);
@@ -150,7 +192,10 @@ int main(int argc, char *argv[])
"9 - CVODE (implicit BDF),\n\t"
"10 - ARKODE (default explicit),\n\t"
"11 - ARKODE (explicit Fehlberg-6-4-5),\n\t"
"12 - ARKODE (default impicit).");
"12 - ARKODE (default implicit),\n\t"
"13 - ARKODE (default explicit with MFEM mass solve),\n\t"
"14 - ARKODE (explicit Fehlberg-6-4-5 with MFEM mass solve),\n\t"
"15 - ARKODE (default implicit with MFEM mass solve).");
args.AddOption(&t_final, "-tf", "--t-final",
"Final time; start time is 0.");
args.AddOption(&dt, "-dt", "--time-step",
@@ -174,40 +219,33 @@ int main(int argc, char *argv[])
return 1;
}
if (myid == 0)
if (Mpi::Root())
{
args.PrintOptions(cout);
}
// check for valid ODE solver option
if (ode_solver_type < 1 || ode_solver_type > 12)
{
if (myid == 0)
{
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
}
return 1;
}
bool use_mass_solver = ode_solver_type >= 13;
// 3. Read the serial mesh from the given mesh file on all processors. We can
// 3. Define a parallel mesh by a partitioning of a serial mesh. Read the
// serial mesh from the given mesh file on all processors. We can
// handle triangular, quadrilateral, tetrahedral and hexahedral meshes
// with the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
// 4. Refine the mesh in serial to increase the resolution. In this example
// we do 'ser_ref_levels' of uniform refinement, where 'ser_ref_levels' is
// a command-line parameter.
for (int lev = 0; lev < ser_ref_levels; lev++)
std::unique_ptr<ParMesh> pmesh;
{
mesh->UniformRefinement();
}
std::unique_ptr<Mesh> mesh(new Mesh(mesh_file, 1, 1));
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted.
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
delete mesh;
// 4. Refine the mesh in serial to increase the resolution. In this example
// we do 'ser_ref_levels' of uniform refinement, where 'ser_ref_levels' is
// a command-line parameter.
for (int lev = 0; lev < ser_ref_levels; lev++)
{
mesh->UniformRefinement();
}
// 5. Refine this mesh further in parallel to increase the resolution.
// Once the parallel mesh is defined, the serial mesh can be deleted.
pmesh = std::make_unique<ParMesh>(MPI_COMM_WORLD, *mesh);
}
for (int lev = 0; lev < par_ref_levels; lev++)
{
pmesh->UniformRefinement();
@@ -215,8 +253,9 @@ int main(int argc, char *argv[])
// 6. Define the vector finite element space representing the current and the
// initial temperature, u_ref.
int dim = pmesh->Dimension();
H1_FECollection fe_coll(order, dim);
ParFiniteElementSpace fespace(pmesh, &fe_coll);
ParFiniteElementSpace fespace(pmesh.get(), &fe_coll);
int fe_size = fespace.GlobalTrueVSize();
if (myid == 0)
@@ -233,8 +272,17 @@ int main(int argc, char *argv[])
Vector u;
u_gf.GetTrueDofs(u);
// 8. Initialize the conduction operator and the VisIt visualization.
ConductionOperator oper(fespace, alpha, kappa, u);
// 8. Initialize the conduction ODE operator and the visualization.
ConductionOperator::Type ode_expression_type;
if (use_mass_solver)
{
ode_expression_type = ConductionOperator::Type::IMPLICIT;
}
else
{
ode_expression_type = ConductionOperator::Type::EXPLICIT;
}
ConductionOperator oper(fespace, alpha, kappa, u, ode_expression_type);
u_gf.SetFromTrueDofs(u);
{
@@ -249,7 +297,7 @@ int main(int argc, char *argv[])
u_gf.Save(osol);
}
VisItDataCollection visit_dc("Example16-Parallel", pmesh);
VisItDataCollection visit_dc("Example16-Parallel", pmesh.get());
visit_dc.RegisterField("temperature", &u_gf);
if (visit)
{
@@ -293,52 +341,76 @@ int main(int argc, char *argv[])
}
// 9. Define the ODE solver used for time integration.
double t = 0.0;
ODESolver *ode_solver = NULL;
CVODESolver *cvode = NULL;
ARKStepSolver *arkode = NULL;
real_t t = 0.0;
std::unique_ptr<ODESolver> ode_solver;
switch (ode_solver_type)
{
// MFEM explicit methods
case 1: ode_solver = new ForwardEulerSolver; break;
case 2: ode_solver = new RK2Solver(0.5); break; // midpoint method
case 3: ode_solver = new RK3SSPSolver; break;
case 4: ode_solver = new RK4Solver; break;
case 1: ode_solver = std::make_unique<ForwardEulerSolver>(); break;
case 2: ode_solver = std::make_unique<RK2Solver>(0.5); break; // midpoint method
case 3: ode_solver = std::make_unique<RK3SSPSolver>(); break;
case 4: ode_solver = std::make_unique<RK4Solver>(); break;
// MFEM implicit L-stable methods
case 5: ode_solver = new BackwardEulerSolver; break;
case 6: ode_solver = new SDIRK23Solver(2); break;
case 7: ode_solver = new SDIRK33Solver; break;
case 5: ode_solver = std::make_unique<BackwardEulerSolver>(); break;
case 6: ode_solver = std::make_unique<SDIRK23Solver>(2); break;
case 7: ode_solver = std::make_unique<SDIRK33Solver>(); break;
// CVODE
case 8:
cvode = new CVODESolver(MPI_COMM_WORLD, CV_ADAMS);
cvode->Init(oper);
cvode->SetSStolerances(reltol, abstol);
cvode->SetMaxStep(dt);
ode_solver = cvode; break;
case 9:
cvode = new CVODESolver(MPI_COMM_WORLD, CV_BDF);
{
int cvode_solver_type;
if (ode_solver_type == 8)
{
cvode_solver_type = CV_ADAMS;
}
else
{
cvode_solver_type = CV_BDF;
}
std::unique_ptr<CVODESolver> cvode(
new CVODESolver(MPI_COMM_WORLD, cvode_solver_type));
cvode->Init(oper);
cvode->SetSStolerances(reltol, abstol);
cvode->SetMaxStep(dt);
ode_solver = cvode; break;
ode_solver = std::move(cvode);
break;
}
// ARKODE
case 10:
case 11:
arkode = new ARKStepSolver(MPI_COMM_WORLD, ARKStepSolver::EXPLICIT);
case 12:
case 13:
case 14:
case 15:
{
ARKStepSolver::Type arkode_solver_type;
if (ode_solver_type == 12 || ode_solver_type == 15)
{
arkode_solver_type = ARKStepSolver::IMPLICIT;
}
else
{
arkode_solver_type = ARKStepSolver::EXPLICIT;
}
std::unique_ptr<ARKStepSolver> arkode(
new ARKStepSolver(MPI_COMM_WORLD, arkode_solver_type));
arkode->Init(oper);
arkode->SetSStolerances(reltol, abstol);
arkode->SetMaxStep(dt);
if (ode_solver_type == 11)
if (ode_solver_type == 11 || ode_solver_type == 14)
{
arkode->SetERKTableNum(ARKODE_FEHLBERG_13_7_8);
}
ode_solver = arkode; break;
case 12:
arkode = new ARKStepSolver(MPI_COMM_WORLD, ARKStepSolver::IMPLICIT);
arkode->Init(oper);
arkode->SetSStolerances(reltol, abstol);
arkode->SetMaxStep(dt);
ode_solver = arkode; break;
if (use_mass_solver)
{
arkode->UseMFEMMassLinearSolver(SUNFALSE);
}
ode_solver = std::move(arkode);
break;
}
default:
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
return 3;
}
// Initialize MFEM integrators, SUNDIALS integrators are initialized above
@@ -346,12 +418,18 @@ int main(int argc, char *argv[])
// Since we want to update the diffusion coefficient after every time step,
// we need to use the "one-step" mode of the SUNDIALS solvers.
if (cvode) { cvode->SetStepMode(CV_ONE_STEP); }
if (arkode) { arkode->SetStepMode(ARK_ONE_STEP); }
if (CVODESolver* cvode = dynamic_cast<CVODESolver*>(ode_solver.get()))
{
cvode->SetStepMode(CV_ONE_STEP);
}
else if (ARKStepSolver* arkode = dynamic_cast<ARKStepSolver*>(ode_solver.get()))
{
arkode->SetStepMode(ARK_ONE_STEP);
}
// 10. Perform time-integration (looping over the time iterations, ti, with a
// time-step dt).
if (myid == 0)
if (Mpi::Root())
{
cout << "Integrating the ODE ..." << endl;
}
@@ -361,7 +439,7 @@ int main(int argc, char *argv[])
bool last_step = false;
for (int ti = 1; !last_step; ti++)
{
double dt_real = min(dt, t_final - t);
real_t dt_real = min(dt, t_final - t);
// Note that since we are using the "one-step" mode of the SUNDIALS
// solvers, they will, generally, step over the final time and will not
@@ -377,8 +455,14 @@ int main(int argc, char *argv[])
if (myid == 0)
{
cout << "step " << ti << ", t = " << t << endl;
if (cvode) { cvode->PrintInfo(); }
if (arkode) { arkode->PrintInfo(); }
if (CVODESolver* cvode = dynamic_cast<CVODESolver*>(ode_solver.get()))
{
cvode->PrintInfo();
}
else if (ARKStepSolver* arkode = dynamic_cast<ARKStepSolver*>(ode_solver.get()))
{
arkode->PrintInfo();
}
}
u_gf.SetFromTrueDofs(u);
@@ -395,46 +479,38 @@ int main(int argc, char *argv[])
visit_dc.Save();
}
}
oper.SetParameters(u);
oper.SetConductionTensor(u);
}
tic_toc.Stop();
if (myid == 0)
if (Mpi::Root())
{
cout << "Done, " << tic_toc.RealTime() << "s." << endl;
}
// 11. Save the final solution in parallel. This output can be viewed later
// using GLVis: "glvis -np <np> -m ex16-mesh -g ex16-final".
{
ostringstream sol_name;
sol_name << "ex16-final." << setfill('0') << setw(6) << myid;
ofstream osol(sol_name.str().c_str());
osol.precision(precision);
u_gf.Save(osol);
}
// 12. Free the used memory.
delete ode_solver;
delete pmesh;
u_gf.Save("ex16-final", precision);
return 0;
}
ConductionOperator::ConductionOperator(ParFiniteElementSpace &f, double al,
double kap, const Vector &u)
: TimeDependentOperator(f.GetTrueVSize(), 0.0), fespace(f), M(NULL), K(NULL),
T(NULL),
M_solver(f.GetComm()), T_solver(f.GetComm()), z(height)
ConductionOperator::ConductionOperator(ParFiniteElementSpace &fes,
const real_t alpha, const real_t kappa,
const Vector &u,
const Type &ode_expression_type)
: TimeDependentOperator(fes.GetTrueVSize(), 0.0, ode_expression_type),
fespace(fes), alpha(alpha), kappa(kappa), M(&fespace),
M_solver(fes.GetComm()), T_solver(fes.GetComm()), z(height)
{
const double rel_tol = 1e-8;
// specify a relative tolerance for all solves with MFEM integrators
const real_t rel_tol = 1e-8;
M = new ParBilinearForm(&fespace);
M->AddDomainIntegrator(new MassIntegrator());
M->Assemble(0); // keep sparsity pattern of M and K the same
M->FormSystemMatrix(ess_tdof_list, Mmat);
M.AddDomainIntegrator(new MassIntegrator());
M.Assemble(0); // keep zeros to keep sparsity pattern of M and K the same
M.FormSystemMatrix(ess_tdof_list, Mmat);
M_solver.iterative_mode = false;
M_solver.SetRelTol(rel_tol);
M_solver.SetRelTol(rel_tol); // will be overwritten with SUNDIALS integrators
M_solver.SetAbsTol(0.0);
M_solver.SetMaxIter(100);
M_solver.SetPrintLevel(0);
@@ -442,97 +518,118 @@ ConductionOperator::ConductionOperator(ParFiniteElementSpace &f, double al,
M_solver.SetPreconditioner(M_prec);
M_solver.SetOperator(Mmat);
alpha = al;
kappa = kap;
T_solver.iterative_mode = false;
T_solver.SetRelTol(rel_tol);
T_solver.SetRelTol(rel_tol); // will be overwritten with SUNDIALS integrators
T_solver.SetAbsTol(0.0);
T_solver.SetMaxIter(100);
T_solver.SetPrintLevel(0);
T_solver.SetPreconditioner(T_prec);
SetParameters(u);
SetConductionTensor(u);
}
void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
{
// Compute:
// du_dt = M^{-1}*-K(u)
// for du_dt
Kmat.Mult(u, z);
z.Neg(); // z = -z
M_solver.Mult(z, du_dt);
}
void ConductionOperator::ImplicitSolve(const double dt,
const Vector &u, Vector &du_dt)
{
// Solve the equation:
// du_dt = M^{-1}*[-K(u + dt*du_dt)]
// for du_dt
if (T) { delete T; }
T = Add(1.0, Mmat, dt, Kmat);
T_solver.SetOperator(*T);
Kmat.Mult(u, z);
z.Neg();
T_solver.Mult(z, du_dt);
}
int ConductionOperator::SUNImplicitSetup(const Vector &x,
const Vector &fx, int jok, int *jcur,
double gamma)
{
// Setup the ODE Jacobian T = M + gamma K.
if (T) { delete T; }
T = Add(1.0, Mmat, gamma, Kmat);
T_solver.SetOperator(*T);
*jcur = 1;
return (0);
}
int ConductionOperator::SUNImplicitSolve(const Vector &b, Vector &x, double tol)
{
// Solve the system A x = z => (M - gamma K) x = M b.
Mmat.Mult(b, z);
T_solver.Mult(z, x);
return (0);
}
void ConductionOperator::SetParameters(const Vector &u)
void ConductionOperator::SetConductionTensor(const Vector &u)
{
// Compute K(u_n).
ParGridFunction u_alpha_gf(&fespace);
u_alpha_gf.SetFromTrueDofs(u);
for (int i = 0; i < u_alpha_gf.Size(); i++)
{
u_alpha_gf(i) = kappa + alpha*u_alpha_gf(i);
}
delete K;
K = new ParBilinearForm(&fespace);
GridFunctionCoefficient u_coeff(&u_alpha_gf);
K = std::make_unique<ParBilinearForm>(&fespace);
K->AddDomainIntegrator(new DiffusionIntegrator(u_coeff));
K->Assemble(0); // keep sparsity pattern of M and K the same
K->Assemble(0); // keep zeros to keep sparsity pattern of M and K the same
K->FormSystemMatrix(ess_tdof_list, Kmat);
}
ConductionOperator::~ConductionOperator()
void ConductionOperator::ExplicitMult(const Vector &u, Vector &v) const
{
delete T;
delete M;
delete K;
// Compute - K(u_n) u.
Kmat.Mult(u, v);
v.Neg();
}
double InitialTemperature(const Vector &x)
void ConductionOperator::Mult(const Vector &u, Vector &k) const
{
if (x.Norml2() < 0.5)
// Compute - inv(M) K(u_n) u.
ExplicitMult(u, z);
M_solver.Mult(z, k);
}
void ConductionOperator::ImplicitSolve(const real_t gam, const Vector &u,
Vector &k)
{
// Solve for k in M k = - K(u_n) [u + gam*k].
ExplicitMult(u, z);
T = std::unique_ptr<HypreParMatrix>(Add(1.0, Mmat, gam, Kmat));
T_solver.SetOperator(*T);
T_solver.Mult(z, k);
}
int ConductionOperator::SUNImplicitSetup(const Vector &u, const Vector &fu,
int jok, int *jcur, real_t gam)
{
// Compute T = M + gamma K(u_n).
T = std::unique_ptr<HypreParMatrix>(Add(1.0, Mmat, gam, Kmat));
T_solver.SetOperator(*T);
*jcur = SUNTRUE; // this should eventually only be set true if K(u) is used
return SUNLS_SUCCESS;
}
int ConductionOperator::SUNImplicitSolve(const Vector &r, Vector &dk,
real_t tol)
{
// Solve the system [M + gamma K(u_n)] dk = - K(u_n) u - M k.
// What value r is providing depends on the ODE expression form:
// EXPLICIT form: r = -inv(M) K(u_n) u - k
// IMPLICIT form: r = -K(u_n) u - M k
T_solver.SetRelTol(tol);
if (isExplicit())
{
return 2.0;
Mmat.Mult(r, z);
T_solver.Mult(z, dk);
}
else
{
return 1.0;
T_solver.Mult(r, dk);
}
if (T_solver.GetConverged())
{
return SUNLS_SUCCESS;
}
else
{
return SUNLS_CONV_FAIL;
}
}
int ConductionOperator::SUNMassSetup()
{
// Do nothing b/c mass solver was setup in constructor.
return SUNLS_SUCCESS;
}
int ConductionOperator::SUNMassSolve(const Vector &b, Vector &x, real_t tol)
{
// Solve the system M x = b.
M_solver.SetRelTol(tol);
M_solver.Mult(b, x);
if (M_solver.GetConverged())
{
return SUNLS_SUCCESS;
}
else
{
return SUNLS_CONV_FAIL;
}
}
int ConductionOperator::SUNMassMult(const Vector &x, Vector &v)
{
// Compute M x.
Mmat.Mult(x, v);
return SUNLS_SUCCESS;
}
+3 -1
View File
@@ -1,7 +1,9 @@
// MFEM Example 9
// SUNDIALS Modification
//
// Compile with: make ex9
// Compile with:
// make ex9 (GNU make)
// make sundials_ex9 (CMake)
//
// Sample runs:
// ex9 -m ../../data/periodic-segment.mesh -p 0 -r 2 -s 7 -dt 0.005
+3 -1
View File
@@ -1,7 +1,9 @@
// MFEM Example 9 - Parallel Version
// SUNDIALS Modification
//
// Compile with: make ex9p
// Compile with:
// make ex9p (GNU make)
// make sundials_ex9p (CMake)
//
// Sample runs:
// mpirun -np 4 ex9p -m ../../data/periodic-segment.mesh -p 1 -rp 1 -s 7 -dt 0.0025
+6
View File
@@ -100,6 +100,12 @@ ex10-test-seq: ex10
@$(call mfem-test,$<,, $(SERIAL_NAME),$(EX10_ARGS))
ex10p-test-par: ex10p
@$(call mfem-test,$<, $(RUN_MPI), $(PARALLEL_NAME),$(EX10P_ARGS))
# Example 16: test ARKODE with implicit time stepping using mass form
EX16_COMMON_ARGS := -s 15
ex16-test-seq: ex16
@$(call mfem-test,$<,, $(SERIAL_NAME),$(EX16_COMMON_ARGS))
ex16p-test-par: ex16p
@$(call mfem-test,$<, $(RUN_MPI), $(PARALLEL_NAME),$(EX16_COMMON_ARGS))
# Testing: "test" target and mfem-test* variables are defined in config/test.mk
+3 -3
View File
@@ -112,8 +112,6 @@ set(SRCS
qinterp/eval_by_vdim.cpp
qinterp/grad_by_nodes.cpp
qinterp/grad_by_vdim.cpp
qinterp/grad_phys_by_nodes.cpp
qinterp/grad_phys_by_vdim.cpp
qspace.cpp
quadinterpolator.cpp
quadinterpolator_face.cpp
@@ -192,6 +190,9 @@ set(HDRS
hybridization.hpp
intrules.hpp
intrules_cut.hpp
kernel_dispatch.hpp
kernel_reporter.hpp
kernels.hpp
ceed/interface/basis.hpp
ceed/interface/integrator.hpp
ceed/interface/interface.hpp
@@ -223,7 +224,6 @@ set(HDRS
nonlinearform_ext.hpp
nonlininteg.hpp
qfunction.hpp
qinterp/dispatch.hpp
qinterp/eval.hpp
qinterp/grad.hpp
qspace.hpp
+46
View File
@@ -19,6 +19,8 @@
#include "qfunction.hpp"
#include <memory>
#include "kernel_dispatch.hpp"
namespace mfem
{
@@ -2127,6 +2129,22 @@ public:
can be a scalar or a matrix coefficient. */
class DiffusionIntegrator: public BilinearFormIntegrator
{
public:
using ApplyKernelType = void(*)(const int, const bool, const Array<real_t>&,
const Array<real_t>&, const Array<real_t>&,
const Array<real_t>&,
const Vector&, const Vector&,
Vector&, const int, const int);
using DiagonalKernelType = void(*)(const int, const bool, const Array<real_t>&,
const Array<real_t>&, const Vector&, Vector&,
const int, const int);
MFEM_REGISTER_KERNELS(ApplyPAKernels, ApplyKernelType, (int, int, int));
MFEM_REGISTER_KERNELS(DiagonalPAKernels, DiagonalKernelType, (int, int, int));
static struct Kernels { Kernels(); } kernels;
protected:
Coefficient *Q;
VectorCoefficient *VQ;
@@ -2287,6 +2305,13 @@ public:
bool SupportsCeed() const { return DeviceCanUseCeed(); }
Coefficient *GetCoefficient() const { return Q; }
template <int DIM, int D1D, int Q1D>
static void AddSpecialization()
{
ApplyPAKernels::Specialization<DIM,D1D,Q1D>::Add();
DiagonalPAKernels::Specialization<DIM,D1D,Q1D>::Add();
}
};
/** Class for local mass matrix assembling $a(u,v) := (Q u, v)$ */
@@ -2306,6 +2331,20 @@ protected:
const FaceGeometricFactors *face_geom; ///< Not owned
int dim, ne, nq, dofs1D, quad1D;
public:
using ApplyKernelType = void(*)(const int, const Array<real_t>&,
const Array<real_t>&, const Vector&,
const Vector&, Vector&, const int, const int);
using DiagonalKernelType = void(*)(const int, const Array<real_t>&,
const Vector&, Vector&, const int,
const int);
MFEM_REGISTER_KERNELS(ApplyPAKernels, ApplyKernelType, (int, int, int));
MFEM_REGISTER_KERNELS(DiagonalPAKernels, DiagonalKernelType, (int, int, int));
static struct Kernels { Kernels(); } kernels;
public:
MassIntegrator(const IntegrationRule *ir = NULL)
: BilinearFormIntegrator(ir), Q(NULL), maps(NULL), geom(NULL) { }
@@ -2351,6 +2390,13 @@ public:
bool SupportsCeed() const { return DeviceCanUseCeed(); }
const Coefficient *GetCoefficient() const { return Q; }
template <int DIM, int D1D, int Q1D>
static void AddSpecialization()
{
ApplyPAKernels::Specialization<DIM,D1D,Q1D>::Add();
DiagonalPAKernels::Specialization<DIM,D1D,Q1D>::Add();
}
};
/** Mass integrator $(u, v)$ restricted to the boundary of a domain */
+17 -2
View File
@@ -52,6 +52,15 @@ protected:
const DenseMatrix &EvalTransAdjugateJ();
const DenseMatrix &EvalInverseJ();
/// @name Tolerance used for point comparisons
///@{
#ifdef MFEM_USE_DOUBLE
static constexpr real_t tol_0 = 1e-15;
#elif defined(MFEM_USE_SINGLE)
static constexpr real_t tol_0 = 1e-7;
#endif
///@}
public:
/** This enumeration declares the values stored in
@@ -176,7 +185,7 @@ public:
returned. This method is not 100 percent reliable for non-linear
transformations. */
virtual int TransformBack(const Vector &pt, IntegrationPoint &ip,
const real_t phys_tol = 1e-15) = 0;
const real_t phys_tol = tol_0) = 0;
virtual ~ElementTransformation() { }
};
@@ -281,9 +290,15 @@ public:
rel_qpts_order(-1),
solver_type(NewtonElementProject),
max_iter(16),
#ifdef MFEM_USE_DOUBLE
ref_tol(1e-15),
phys_rtol(1e-15),
ip_tol(1e-8),
#elif defined(MFEM_USE_SINGLE)
ref_tol(1e-7),
phys_rtol(1e-7),
ip_tol(1e-4),
#endif
print_level(-1)
{ }
@@ -449,7 +464,7 @@ public:
returned. This method is not 100 percent reliable for non-linear
transformations. */
virtual int TransformBack(const Vector & v, IntegrationPoint & ip,
const real_t phys_rel_tol = 1e-15)
const real_t phys_rel_tol = tol_0)
{
InverseElementTransformation inv_tr(this);
inv_tr.SetPhysicalRelTol(phys_rel_tol);
+26 -25
View File
@@ -394,7 +394,32 @@ public:
/// Get a const reference to the nodes of the element
const IntegrationRule & GetNodes() const { return Nodes; }
// virtual functions for finite elements on vector spaces
/** @brief Evaluate the Hessians of all shape functions of a scalar finite
element in reference space at the given point @a ip. */
/** Each row of the result DenseMatrix @a Hessian contains upper triangular
part of the Hessian of one shape function.
The order in 2D is {u_xx, u_xy, u_yy}.
The size (#dof x (#dim (#dim+1)/2) of @a Hessian must be set in advance.*/
virtual void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &Hessian) const;
/** @brief Evaluate the Hessian of all shape functions of a scalar finite
element in physical space at the given point @a ip. */
/** The size (#dof, #dim*(#dim+1)/2) of @a Hessian must be set in advance. */
void CalcPhysHessian(ElementTransformation &Trans,
DenseMatrix& Hessian) const;
/** @brief Evaluate the Laplacian of all shape functions of a scalar finite
element in physical space at the given point @a ip. */
/** The size (#dof) of @a Laplacian must be set in advance. */
void CalcPhysLaplacian(ElementTransformation &Trans,
Vector& Laplacian) const;
/** @brief Evaluate the Laplacian of all shape functions of a scalar finite
element in physical space at the given point @a ip. */
/** The size (#dof) of @a Laplacian must be set in advance. */
void CalcPhysLinLaplacian(ElementTransformation &Trans,
Vector& Laplacian) const;
/** @brief Evaluate the values of all shape functions of a *vector* finite
element in reference space at the given point @a ip. */
@@ -454,30 +479,6 @@ public:
*/
virtual void GetFaceDofs(int face, int **dofs, int *ndofs) const;
/** @brief Evaluate the Hessians of all shape functions of a scalar finite
element in reference space at the given point @a ip. */
/** Each row of the result DenseMatrix @a Hessian contains upper triangular
part of the Hessian of one shape function.
The order in 2D is {u_xx, u_xy, u_yy}.
The size (#dof x (#dim (#dim+1)/2) of @a Hessian must be set in advance.*/
virtual void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &Hessian) const;
/** @brief Evaluate the Hessian of all shape functions of a scalar finite
element in reference space at the given point @a ip. */
/** The size (#dof, #dim*(#dim+1)/2) of @a Hessian must be set in advance. */
virtual void CalcPhysHessian(ElementTransformation &Trans,
DenseMatrix& Hessian) const;
/** @brief Evaluate the Laplacian of all shape functions of a scalar finite
element in reference space at the given point @a ip. */
/** The size (#dof) of @a Laplacian must be set in advance. */
virtual void CalcPhysLaplacian(ElementTransformation &Trans,
Vector& Laplacian) const;
virtual void CalcPhysLinLaplacian(ElementTransformation &Trans,
Vector& Laplacian) const;
/** @brief Return the local interpolation matrix @a I (Dof x Dof) where the
fine element is the image of the base geometry under the given
transformation. */
+614 -1
View File
@@ -398,8 +398,621 @@ void NURBS3DFiniteElement::CalcHessian (const IntegrationPoint &ip,
hessian(o,5) = hessian(o,5)*sum
- 2*du(o,1)*sum*dsum[1]
+ u[o]*sum*(2*dsum[1]*dsum[1] - d2sum[5]);
}
}
void NURBS_HDiv2DFiniteElement::SetOrder() const
{
orders[0] = kv[0]->GetOrder();
orders[1] = kv[1]->GetOrder();
if (kv1[0]) { delete kv1[0]; }
if (kv1[1]) { delete kv1[1]; }
kv1[0] = kv[0]->DegreeElevate(1);
kv1[1] = kv[1]->DegreeElevate(1);
shape_x.SetSize(orders[0]+1);
shape_y.SetSize(orders[1]+1);
dshape_x.SetSize(orders[0]+1);
dshape_y.SetSize(orders[1]+1);
d2shape_x.SetSize(orders[0]+1);
d2shape_y.SetSize(orders[1]+1);
shape1_x.SetSize(orders[0]+2);
shape1_y.SetSize(orders[1]+2);
dshape1_x.SetSize(orders[0]+2);
dshape1_y.SetSize(orders[1]+2);
d2shape1_x.SetSize(orders[0]+2);
d2shape1_y.SetSize(orders[1]+2);
order = max(orders[0]+1, orders[1]+1);
dof = (orders[0] + 2)*(orders[1] + 1)
+ (orders[1] + 1)*(orders[1] + 2);
u.SetSize(dof);
du.SetSize(dof);
weights.SetSize(dof);
}
void NURBS_HDiv2DFiniteElement::CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const
{
kv[0]->CalcShape(shape_x, ijk[0], ip.x);
kv[1]->CalcShape(shape_y, ijk[1], ip.y);
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
int o = 0;
for (int j = 0; j <= orders[1]; j++)
{
const real_t sy = shape_y(j);
for (int i = 0; i <= orders[0]+1; i++, o++)
{
shape(o,0) = shape1_x(i)*sy;
shape(o,1) = 0.0;
}
}
for (int j = 0; j <= orders[1]+1; j++)
{
const real_t sy1 = shape1_y(j);
for (int i = 0; i <= orders[0]; i++, o++)
{
shape(o,0) = 0.0;
shape(o,1) = shape_x(i)*sy1;
}
}
}
void NURBS_HDiv2DFiniteElement::CalcVShape(ElementTransformation &Trans,
DenseMatrix &shape) const
{
CalcVShape(Trans.GetIntPoint(), shape);
const DenseMatrix & J = Trans.Jacobian();
MFEM_ASSERT(J.Width() == 2 && J.Height() == 2,
"NURBS_HDiv2DFiniteElement cannot be embedded in "
"3 dimensional spaces");
for (int i=0; i<dof; i++)
{
real_t sx = shape(i, 0);
real_t sy = shape(i, 1);
shape(i, 0) = sx * J(0, 0) + sy * J(0, 1);
shape(i, 1) = sx * J(1, 0) + sy * J(1, 1);
}
shape *= (1.0 / Trans.Weight());
}
void NURBS_HDiv2DFiniteElement::CalcDivShape(const IntegrationPoint &ip,
Vector &divshape) const
{
kv[0]->CalcShape ( shape_x, ijk[0], ip.x);
kv[1]->CalcShape ( shape_y, ijk[1], ip.y);
kv1[0]->CalcDShape(dshape1_x, ijk[0], ip.x);
kv1[1]->CalcDShape(dshape1_y, ijk[1], ip.y);
int o = 0;
for (int j = 0; j <= orders[1]; j++)
{
const real_t sy = shape_y(j);
for (int i = 0; i <= orders[0]+1; i++, o++)
{
divshape(o) = dshape1_x(i)*sy;
}
}
for (int j = 0; j <= orders[1]+1; j++)
{
const real_t dsy1 = dshape1_y(j);
for (int i = 0; i <= orders[0]; i++, o++)
{
divshape(o) = shape_x(i)*dsy1;
}
}
}
NURBS_HDiv2DFiniteElement::~NURBS_HDiv2DFiniteElement()
{
if (kv1[0]) { delete kv1[0]; }
if (kv1[1]) { delete kv1[1]; }
}
void NURBS_HDiv3DFiniteElement::SetOrder() const
{
orders[0] = kv[0]->GetOrder();
orders[1] = kv[1]->GetOrder();
orders[2] = kv[2]->GetOrder();
if (kv1[0]) { delete kv1[0]; }
if (kv1[1]) { delete kv1[1]; }
if (kv1[2]) { delete kv1[2]; }
kv1[0] = kv[0]->DegreeElevate(1);
kv1[1] = kv[1]->DegreeElevate(1);
kv1[2] = kv[2]->DegreeElevate(1);
shape_x.SetSize(orders[0]+1);
shape_y.SetSize(orders[1]+1);
shape_z.SetSize(orders[2]+1);
dshape_x.SetSize(orders[0]+1);
dshape_y.SetSize(orders[1]+1);
dshape_z.SetSize(orders[2]+1);
d2shape_x.SetSize(orders[0]+1);
d2shape_y.SetSize(orders[1]+1);
d2shape_z.SetSize(orders[2]+1);
shape1_x.SetSize(orders[0]+2);
shape1_y.SetSize(orders[1]+2);
shape1_z.SetSize(orders[2]+2);
dshape1_x.SetSize(orders[0]+2);
dshape1_y.SetSize(orders[1]+2);
dshape1_z.SetSize(orders[2]+2);
d2shape1_x.SetSize(orders[0]+2);
d2shape1_y.SetSize(orders[1]+2);
d2shape1_z.SetSize(orders[2]+2);
order = max(orders[0]+1, max( orders[1]+1, orders[2]+1));
dof = (orders[0] + 2)*(orders[1] + 1)*(orders[2] + 1) +
(orders[0] + 1)*(orders[1] + 2)*(orders[2] + 1) +
(orders[0] + 1)*(orders[1] + 1)*(orders[2] + 2);
u.SetSize(dof);
du.SetSize(dof);
weights.SetSize(dof);
}
void NURBS_HDiv3DFiniteElement::CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const
{
kv[0]->CalcShape(shape_x, ijk[0], ip.x);
kv[1]->CalcShape(shape_y, ijk[1], ip.y);
kv[2]->CalcShape(shape_z, ijk[2], ip.z);
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
kv1[2]->CalcShape(shape1_z, ijk[2], ip.z);
shape = 0.0;
int o = 0;
for (int k = 0; k <= orders[2]; k++)
{
const real_t sz = shape_z(k);
for (int j = 0; j <= orders[1]; j++)
{
const real_t sy_sz = shape_y(j)*sz;
for (int i = 0; i <= orders[0]+1; i++, o++)
{
shape(o,0) = shape1_x(i)*sy_sz;
}
}
}
for (int k = 0; k <= orders[2]; k++)
{
const real_t sz = shape_z(k);
for (int j = 0; j <= orders[1]+1; j++)
{
const real_t sy1_sz = shape1_y(j)*sz;
for (int i = 0; i <= orders[0]; i++, o++)
{
shape(o,1) = shape_x(i)*sy1_sz;
}
}
}
for (int k = 0; k <= orders[2]+1; k++)
{
const real_t sz1 = shape1_z(k);
for (int j = 0; j <= orders[1]; j++)
{
const real_t sy_sz1 = shape_y(j)*sz1;
for (int i = 0; i <= orders[0]; i++, o++)
{
shape(o,2) = shape_x(i)*sy_sz1;
}
}
}
}
void NURBS_HDiv3DFiniteElement::CalcVShape(ElementTransformation &Trans,
DenseMatrix &shape) const
{
CalcVShape(Trans.GetIntPoint(), shape);
const DenseMatrix & J = Trans.Jacobian();
MFEM_ASSERT(J.Width() == 3 && J.Height() == 3,
"RT_R2D_FiniteElement cannot be embedded in "
"3 dimensional spaces");
for (int i=0; i<dof; i++)
{
real_t sx = shape(i, 0);
real_t sy = shape(i, 1);
real_t sz = shape(i, 2);
shape(i, 0) = sx * J(0, 0) + sy * J(0, 1) + sz * J(0, 2);
shape(i, 1) = sx * J(1, 0) + sy * J(1, 1) + sz * J(1, 2);
shape(i, 2) = sx * J(2, 0) + sy * J(2, 1) + sz * J(2, 2);
}
shape *= (1.0 / Trans.Weight());
}
void NURBS_HDiv3DFiniteElement::CalcDivShape(const IntegrationPoint &ip,
Vector &divshape) const
{
kv[0]->CalcShape ( shape_x, ijk[0], ip.x);
kv[1]->CalcShape ( shape_y, ijk[1], ip.y);
kv[2]->CalcShape ( shape_z, ijk[2], ip.z);
kv1[0]->CalcDShape(dshape1_x, ijk[0], ip.x);
kv1[1]->CalcDShape(dshape1_y, ijk[1], ip.y);
kv1[2]->CalcDShape(dshape1_z, ijk[2], ip.z);
int o = 0;
for (int k = 0; k <= orders[2]; k++)
{
const real_t sz = shape_z(k);
for (int j = 0; j <= orders[1]; j++)
{
const real_t sy_sz = shape_y(j)*sz;
for (int i = 0; i <= orders[0]+1; i++, o++)
{
divshape(o) = dshape1_x(i)*sy_sz;
}
}
}
for (int k = 0; k <= orders[2]; k++)
{
const real_t sz = shape_z(k);
for (int j = 0; j <= orders[1]+1; j++)
{
const real_t dy1_sz = dshape1_y(j)*sz;
for (int i = 0; i <= orders[0]; i++, o++)
{
divshape(o) = shape_x(i)*dy1_sz;
}
}
}
for (int k = 0; k <= orders[2]+1; k++)
{
const real_t dz1 = dshape1_z(k);
for (int j = 0; j <= orders[1]; j++)
{
const real_t sy_dz1 = shape_y(j)*dz1;
for (int i = 0; i <= orders[0]; i++, o++)
{
divshape(o) = shape_x(i)*sy_dz1;
}
}
}
}
NURBS_HDiv3DFiniteElement::~NURBS_HDiv3DFiniteElement()
{
if (kv1[0]) { delete kv1[0]; }
if (kv1[1]) { delete kv1[1]; }
if (kv1[2]) { delete kv1[2]; }
}
void NURBS_HCurl2DFiniteElement::SetOrder() const
{
orders[0] = kv[0]->GetOrder();
orders[1] = kv[1]->GetOrder();
if (kv1[0]) { delete kv1[0]; }
if (kv1[1]) { delete kv1[1]; }
kv1[0] = kv[0]->DegreeElevate(1);
kv1[1] = kv[1]->DegreeElevate(1);
shape_x.SetSize(orders[0]+1);
shape_y.SetSize(orders[1]+1);
dshape_x.SetSize(orders[0]+1);
dshape_y.SetSize(orders[1]+1);
d2shape_x.SetSize(orders[0]+1);
d2shape_y.SetSize(orders[1]+1);
shape1_x.SetSize(orders[0]+2);
shape1_y.SetSize(orders[1]+2);
dshape1_x.SetSize(orders[0]+2);
dshape1_y.SetSize(orders[1]+2);
d2shape1_x.SetSize(orders[0]+2);
d2shape1_y.SetSize(orders[1]+2);
order = max(orders[0]+1, orders[1]+1);
dof = (orders[0] + 1)*(orders[1] + 2)
+ (orders[1] + 2)*(orders[1] + 1);
u.SetSize(dof);
du.SetSize(dof);
weights.SetSize(dof);
}
void NURBS_HCurl2DFiniteElement::CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const
{
kv[0]->CalcShape(shape_x, ijk[0], ip.x);
kv[1]->CalcShape(shape_y, ijk[1], ip.y);
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
int o = 0;
for (int j = 0; j <= orders[1]+1; j++)
{
const real_t sy1 = shape1_y(j);
for (int i = 0; i <= orders[0]; i++, o++)
{
shape(o,0) = shape_x(i)*sy1;
shape(o,1) = 0.0;
}
}
for (int j = 0; j <= orders[1]; j++)
{
const real_t sy = shape_y(j);
for (int i = 0; i <= orders[0]+1; i++, o++)
{
shape(o,0) = 0.0;
shape(o,1) = shape1_x(i)*sy;
}
}
}
void NURBS_HCurl2DFiniteElement::CalcVShape(ElementTransformation &Trans,
DenseMatrix &shape) const
{
CalcVShape(Trans.GetIntPoint(), shape);
const DenseMatrix & JI = Trans.InverseJacobian();
MFEM_ASSERT(JI.Width() == 2 && JI.Height() == 2,
"NURBS_HCurl2DFiniteElement cannot be embedded in "
"3 dimensional spaces");
for (int i=0; i<dof; i++)
{
real_t sx = shape(i, 0);
real_t sy = shape(i, 1);
shape(i, 0) = sx * JI(0, 0) + sy * JI(1, 0);
shape(i, 1) = sx * JI(0, 1) + sy * JI(1, 1);
}
}
void NURBS_HCurl2DFiniteElement::CalcCurlShape(const IntegrationPoint &ip,
DenseMatrix &curl_shape) const
{
kv[0]->CalcShape ( shape_x, ijk[0], ip.x);
kv[1]->CalcShape ( shape_y, ijk[1], ip.y);
kv1[0]->CalcDShape(dshape1_x, ijk[0], ip.x);
kv1[1]->CalcDShape(dshape1_y, ijk[1], ip.y);
int o = 0;
for (int j = 0; j <= orders[1]+1; j++)
{
const real_t dsy1 = dshape1_y(j);
for (int i = 0; i <= orders[0]; i++, o++)
{
curl_shape(o,0) = -shape_x(i)*dsy1;
}
}
for (int j = 0; j <= orders[1]; j++)
{
const real_t sy = shape_y(j);
for (int i = 0; i <= orders[0]+1; i++, o++)
{
curl_shape(o,0) = dshape1_x(i)*sy;
}
}
}
NURBS_HCurl2DFiniteElement::~NURBS_HCurl2DFiniteElement()
{
if (kv1[0]) { delete kv1[0]; }
if (kv1[1]) { delete kv1[1]; }
}
void NURBS_HCurl3DFiniteElement::SetOrder() const
{
orders[0] = kv[0]->GetOrder();
orders[1] = kv[1]->GetOrder();
orders[2] = kv[2]->GetOrder();
if (kv1[0]) { delete kv1[0]; }
if (kv1[1]) { delete kv1[1]; }
if (kv1[2]) { delete kv1[2]; }
kv1[0] = kv[0]->DegreeElevate(1);
kv1[1] = kv[1]->DegreeElevate(1);
kv1[2] = kv[2]->DegreeElevate(1);
shape_x.SetSize(orders[0]+1);
shape_y.SetSize(orders[1]+1);
shape_z.SetSize(orders[2]+1);
dshape_x.SetSize(orders[0]+1);
dshape_y.SetSize(orders[1]+1);
dshape_z.SetSize(orders[2]+1);
d2shape_x.SetSize(orders[0]+1);
d2shape_y.SetSize(orders[1]+1);
d2shape_z.SetSize(orders[2]+1);
shape1_x.SetSize(orders[0]+2);
shape1_y.SetSize(orders[1]+2);
shape1_z.SetSize(orders[2]+2);
dshape1_x.SetSize(orders[0]+2);
dshape1_y.SetSize(orders[1]+2);
dshape1_z.SetSize(orders[2]+2);
d2shape1_x.SetSize(orders[0]+2);
d2shape1_y.SetSize(orders[1]+2);
d2shape1_z.SetSize(orders[2]+2);
order = max(orders[0]+1, max( orders[1]+1, orders[2]+1));
dof = (orders[0] + 1)*(orders[1] + 2)*(orders[2] + 2) +
(orders[0] + 2)*(orders[1] + 1)*(orders[2] + 2) +
(orders[0] + 2)*(orders[1] + 2)*(orders[2] + 1);
u.SetSize(dof);
du.SetSize(dof);
weights.SetSize(dof);
}
void NURBS_HCurl3DFiniteElement::CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const
{
kv[0]->CalcShape(shape_x, ijk[0], ip.x);
kv[1]->CalcShape(shape_y, ijk[1], ip.y);
kv[2]->CalcShape(shape_z, ijk[2], ip.z);
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
kv1[2]->CalcShape(shape1_z, ijk[2], ip.z);
shape = 0.0;
int o = 0;
for (int k = 0; k <= orders[2]+1; k++)
{
const real_t sz1 = shape1_z(k);
for (int j = 0; j <= orders[1]+1; j++)
{
const real_t sy1_sz1 = shape1_y(j)*sz1;
for (int i = 0; i <= orders[0]; i++, o++)
{
shape(o,0) = shape_x(i)*sy1_sz1;
}
}
}
for (int k = 0; k <= orders[2]+1; k++)
{
const real_t sz1 = shape1_z(k);
for (int j = 0; j <= orders[1]; j++)
{
const real_t sy_sz1 = shape_y(j)*sz1;
for (int i = 0; i <= orders[0]+1; i++, o++)
{
shape(o,1) = shape1_x(i)*sy_sz1;
}
}
}
for (int k = 0; k <= orders[2]; k++)
{
const real_t sz = shape_z(k);
for (int j = 0; j <= orders[1]+1; j++)
{
const real_t sy1_sz = shape1_y(j)*sz;
for (int i = 0; i <= orders[0]+1; i++, o++)
{
shape(o,2) = shape1_x(i)*sy1_sz;
}
}
}
}
void NURBS_HCurl3DFiniteElement::CalcVShape(ElementTransformation &Trans,
DenseMatrix &shape) const
{
CalcVShape(Trans.GetIntPoint(), shape);
const DenseMatrix & JI = Trans.InverseJacobian();
MFEM_ASSERT(JI.Width() == 3 && JI.Height() == 3,
"NURBS_HCurl3DFiniteElement must be in a"
"3 dimensional spaces");
for (int i=0; i<dof; i++)
{
real_t sx = shape(i, 0);
real_t sy = shape(i, 1);
real_t sz = shape(i, 2);
shape(i, 0) = sx * JI(0, 0) + sy * JI(1, 0) + sz * JI(2, 0);
shape(i, 1) = sx * JI(0, 1) + sy * JI(1, 1) + sz * JI(2, 1);
shape(i, 2) = sx * JI(0, 2) + sy * JI(1, 2) + sz * JI(2, 2);
}
}
void NURBS_HCurl3DFiniteElement::CalcCurlShape(const IntegrationPoint &ip,
DenseMatrix &curl_shape) const
{
kv[0]->CalcShape ( shape_x, ijk[0], ip.x);
kv[1]->CalcShape ( shape_y, ijk[1], ip.y);
kv[2]->CalcShape ( shape_z, ijk[2], ip.z);
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
kv1[2]->CalcShape(shape1_z, ijk[2], ip.z);
kv1[0]->CalcDShape(dshape1_x, ijk[0], ip.x);
kv1[1]->CalcDShape(dshape1_y, ijk[1], ip.y);
kv1[2]->CalcDShape(dshape1_z, ijk[2], ip.z);
int o = 0;
for (int k = 0; k <= orders[2]+1; k++)
{
const real_t sz1 = shape1_z(k), dsz1 = dshape1_z(k);
for (int j = 0; j <= orders[1]+1; j++)
{
const real_t sy1_dsz1 = shape1_y(j)*dsz1,
dsy1_sz1 = dshape1_y(j)*sz1;
for (int i = 0; i <= orders[0]; i++, o++)
{
curl_shape(o,0) = 0.0;
curl_shape(o,1) = shape_x(i)*sy1_dsz1;
curl_shape(o,2) = -shape_x(i)*dsy1_sz1;
}
}
}
for (int k = 0; k <= orders[2]+1; k++)
{
const real_t sz1 = shape1_z(k), dsz1 = dshape1_z(k);
for (int j = 0; j <= orders[1]; j++)
{
const real_t sy_dsz1 = shape_y(j)*dsz1,
sy_sz1 = shape_y(j)*sz1;
for (int i = 0; i <= orders[0]+1; i++, o++)
{
curl_shape(o,0) = -shape1_x(i)*sy_dsz1;
curl_shape(o,1) = 0.0;
curl_shape(o,2) = dshape1_x(i)*sy_sz1;
}
}
}
for (int k = 0; k <= orders[2]; k++)
{
const real_t sz = shape_z(k);
for (int j = 0; j <= orders[1]+1; j++)
{
const real_t sy1_sz = shape1_y(j)*sz,
dsy1_sz = dshape1_y(j)*sz;
for (int i = 0; i <= orders[0]+1; i++, o++)
{
curl_shape(o,0) = shape1_x(i)*dsy1_sz;
curl_shape(o,1) = -dshape1_x(i)*sy1_sz;
curl_shape(o,2) = 0.0;
}
}
}
}
NURBS_HCurl3DFiniteElement::~NURBS_HCurl3DFiniteElement()
{
if (kv1[0]) { delete kv1[0]; }
if (kv1[1]) { delete kv1[1]; }
if (kv1[2]) { delete kv1[2]; }
}
}
+380 -23
View File
@@ -20,7 +20,7 @@ namespace mfem
class KnotVector;
/// An arbitrary order and dimension NURBS element
class NURBSFiniteElement : public ScalarFiniteElement
class NURBSFiniteElement
{
protected:
mutable Array <const KnotVector*> kv;
@@ -30,31 +30,34 @@ protected:
public:
/** @brief Construct NURBSFiniteElement with given
@param D Reference space dimension
@param G Geometry type (of type Geometry::Type)
@param Do Number of degrees of freedom in the FiniteElement
@param O Order/degree of the FiniteElement
@param F FunctionSpace type of the FiniteElement
@param dim Reference space dimension
*/
NURBSFiniteElement(int D, Geometry::Type G, int Do, int O, int F)
: ScalarFiniteElement(D, G, Do, O, F)
NURBSFiniteElement(int dim)
{
ijk = NULL;
patch = elem = -1;
kv.SetSize(dim);
weights.SetSize(dof);
weights = 1.0;
}
/// Resets the patch and element data stored in the element
void Reset () const { patch = elem = -1; }
/// Set which IJK in patch should be evaluated
void SetIJK (const int *IJK) const { ijk = IJK; }
/// Get which patch is currently considered
int GetPatch () const { return patch; }
/// Set which patch should be evaluated
void SetPatch (int p) const { patch = p; }
/// Set which elemenet should be evaluated
int GetElement () const { return elem; }
/// Get which element is currently considered
void SetElement (int e) const { elem = e; }
/// Get the KnotVectors
Array <const KnotVector*> &KnotVectors() const { return kv; }
/// Get the Weights
Vector &Weights () const { return weights; }
/// Update the NURBSFiniteElement according to the currently set knot vectors
/// Update the polynomial order according to the currently set knotvectors
/// Resizes all internal data members to have the correct size
/// related to the polynomial order
virtual void SetOrder () const { }
/// Returns the indices (i,j) in 2D or (i,j,k) in 3D of this element in the
@@ -64,7 +67,8 @@ public:
/// An arbitrary order 1D NURBS element on a segment
class NURBS1DFiniteElement : public NURBSFiniteElement
class NURBS1DFiniteElement : public ScalarFiniteElement,
public NURBSFiniteElement
{
protected:
mutable Vector shape_x;
@@ -72,7 +76,8 @@ protected:
public:
/// Construct the NURBS1DFiniteElement of order @a p
NURBS1DFiniteElement(int p)
: NURBSFiniteElement(1, Geometry::SEGMENT, p + 1, p, FunctionSpace::Qk),
: ScalarFiniteElement(1, Geometry::SEGMENT, p + 1, p, FunctionSpace::Qk),
NURBSFiniteElement(1),
shape_x(p + 1) { }
virtual void SetOrder() const;
@@ -84,7 +89,8 @@ public:
};
/// An arbitrary order 2D NURBS element on a square
class NURBS2DFiniteElement : public NURBSFiniteElement
class NURBS2DFiniteElement : public ScalarFiniteElement,
public NURBSFiniteElement
{
protected:
mutable Vector u, shape_x, shape_y, dshape_x, dshape_y, d2shape_x, d2shape_y;
@@ -93,16 +99,18 @@ protected:
public:
/// Construct the NURBS2DFiniteElement of order @a p
NURBS2DFiniteElement(int p)
: NURBSFiniteElement(2, Geometry::SQUARE, (p + 1)*(p + 1), p,
FunctionSpace::Qk),
: ScalarFiniteElement(2, Geometry::SQUARE, (p + 1)*(p + 1), p,
FunctionSpace::Qk),
NURBSFiniteElement(2),
u(dof), shape_x(p + 1), shape_y(p + 1), dshape_x(p + 1),
dshape_y(p + 1), d2shape_x(p + 1), d2shape_y(p + 1), du(dof,2)
{ orders[0] = orders[1] = p; }
/// Construct the NURBS2DFiniteElement with x-order @a px and y-order @a py
NURBS2DFiniteElement(int px, int py)
: NURBSFiniteElement(2, Geometry::SQUARE, (px + 1)*(py + 1),
std::max(px, py), FunctionSpace::Qk),
: ScalarFiniteElement(2, Geometry::SQUARE, (px + 1)*(py + 1),
std::max(px, py), FunctionSpace::Qk),
NURBSFiniteElement(2),
u(dof), shape_x(px + 1), shape_y(py + 1), dshape_x(px + 1),
dshape_y(py + 1), d2shape_x(px + 1), d2shape_y(py + 1), du(dof,2)
{ orders[0] = px; orders[1] = py; }
@@ -116,7 +124,8 @@ public:
};
/// An arbitrary order 3D NURBS element on a cube
class NURBS3DFiniteElement : public NURBSFiniteElement
class NURBS3DFiniteElement : public ScalarFiniteElement,
public NURBSFiniteElement
{
protected:
mutable Vector u, shape_x, shape_y, shape_z;
@@ -127,8 +136,9 @@ protected:
public:
/// Construct the NURBS3DFiniteElement of order @a p
NURBS3DFiniteElement(int p)
: NURBSFiniteElement(3, Geometry::CUBE, (p + 1)*(p + 1)*(p + 1), p,
FunctionSpace::Qk),
: ScalarFiniteElement(3, Geometry::CUBE, (p + 1)*(p + 1)*(p + 1), p,
FunctionSpace::Qk),
NURBSFiniteElement(3),
u(dof), shape_x(p + 1), shape_y(p + 1), shape_z(p + 1),
dshape_x(p + 1), dshape_y(p + 1), dshape_z(p + 1),
d2shape_x(p + 1), d2shape_y(p + 1), d2shape_z(p + 1), du(dof,3)
@@ -137,8 +147,9 @@ public:
/// Construct the NURBS3DFiniteElement with x-order @a px and y-order @a py
/// and z-order @a pz
NURBS3DFiniteElement(int px, int py, int pz)
: NURBSFiniteElement(3, Geometry::CUBE, (px + 1)*(py + 1)*(pz + 1),
std::max(std::max(px,py),pz), FunctionSpace::Qk),
: ScalarFiniteElement(3, Geometry::CUBE, (px + 1)*(py + 1)*(pz + 1),
std::max(std::max(px,py),pz), FunctionSpace::Qk),
NURBSFiniteElement(2),
u(dof), shape_x(px + 1), shape_y(py + 1), shape_z(pz + 1),
dshape_x(px + 1), dshape_y(py + 1), dshape_z(pz + 1),
d2shape_x(px + 1), d2shape_y(py + 1), d2shape_z(pz + 1), du(dof,3)
@@ -152,6 +163,352 @@ public:
DenseMatrix &hessian) const;
};
/** An arbitrary order H(div)-conforming 2D NURBS element on a square.
More details in the following papers:
[1] Annalisa Buffa, Carlo De Falco, Giancarlo Sangalli
"Isogeometric analysis: stable elements for the 2D Stokes equation."
International Journal for Numerical Methods in Fluids 65 (1112) 1407-1422
[2] John A Evans, Thomas JR Hughes
"Isogeometric divergence-conforming B-splines for the unsteady NavierStokes equations."
Journal of Computational Physics (241) 141-167
*/
class NURBS_HDiv2DFiniteElement : public VectorFiniteElement,
public NURBSFiniteElement
{
protected:
mutable Vector shape_x, shape_y, dshape_x, dshape_y, d2shape_x, d2shape_y;
mutable Vector shape1_x, shape1_y, dshape1_x, dshape1_y, d2shape1_x, d2shape1_y;
mutable Vector u;
mutable DenseMatrix du;
mutable Array <const KnotVector*> kv1;
public:
/// Construct the NURBS_HDiv2DFiniteElement of order @a p
NURBS_HDiv2DFiniteElement(int p)
: VectorFiniteElement(2, Geometry::SQUARE, 2*(p + 1)*(p + 2), p,
H_DIV,FunctionSpace::Qk),
NURBSFiniteElement(2),
shape_x(p + 1), shape_y(p + 1), dshape_x(p + 1),
dshape_y(p + 1), d2shape_x(p + 1), d2shape_y(p + 1),
shape1_x(p + 2), shape1_y(p + 2), dshape1_x(p + 2),
dshape1_y(p + 2), d2shape1_x(p + 2), d2shape1_y(p + 2),
u(dof), du(dof,2)
{
orders[0] = orders[1] = p;
kv1.SetSize(dim);
kv1[0] = nullptr;
kv1[1] = nullptr;
}
/// Construct the NURBS_HDiv2DFiniteElement with x-order @a px and y-order @a py
NURBS_HDiv2DFiniteElement(int px, int py)
: VectorFiniteElement(2, Geometry::SQUARE,
(px + 2)*(py + 1)+(px + 1)*(py + 2),
std::max(px, py), H_DIV, FunctionSpace::Qk),
NURBSFiniteElement(2),
shape_x(px + 1), shape_y(py + 1), dshape_x(px + 1),
dshape_y(py + 1), d2shape_x(px + 1), d2shape_y(py + 1),
shape1_x(px + 2), shape1_y(py + 2), dshape1_x(px + 2),
dshape1_y(py + 2), d2shape1_x(px + 2), d2shape1_y(py + 2),
u(dof), du(dof,2)
{
orders[0] = px; orders[1] = py;
kv1.SetSize(dim);
kv1[0] = nullptr;
kv1[1] = nullptr;
}
virtual void SetOrder() const;
virtual void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const;
/** @brief Evaluate the values of all shape functions of a *vector* finite
element in physical space at the point described by @a Trans. */
/** Each row of the result DenseMatrix @a shape contains the components of
one vector shape function. The size (#dof x SDim) of @a shape must be set
in advance, where SDim >= #dim is the physical space dimension as
described by @a Trans. */
virtual void CalcVShape(ElementTransformation &Trans,
DenseMatrix &shape) const;
/** @brief Evaluate the divergence of all shape functions of a *vector*
finite element in reference space at the given point @a ip. */
/** The size (#dof) of the result Vector @a divshape must be set in advance.
*/
virtual void CalcDivShape(const IntegrationPoint &ip,
Vector &divshape) const;
~NURBS_HDiv2DFiniteElement();
};
/** An arbitrary order H(div)-conforming 3D NURBS element on a cube
More details in the following papers:
[1] Annalisa Buffa, Carlo De Falco, Giancarlo Sangalli
"Isogeometric analysis: stable elements for the 2D Stokes equation."
International Journal for Numerical Methods in Fluids 65 (1112) 1407-1422
[2] John A Evans, Thomas JR Hughes
"Isogeometric divergence-conforming B-splines for the unsteady
NavierStokes equations."
Journal of Computational Physics (241) 141-167 */
class NURBS_HDiv3DFiniteElement : public VectorFiniteElement,
public NURBSFiniteElement
{
protected:
mutable Vector shape_x, shape_y, shape_z;
mutable Vector dshape_x, dshape_y, dshape_z;
mutable Vector d2shape_x, d2shape_y, d2shape_z;
mutable Vector shape1_x, shape1_y, shape1_z;
mutable Vector dshape1_x, dshape1_y, dshape1_z;
mutable Vector d2shape1_x, d2shape1_y, d2shape1_z;
mutable Vector u;
mutable DenseMatrix du;
mutable Array <const KnotVector*> kv1;
public:
/// Construct the NURBS_HDiv3DFiniteElement of order @a p
NURBS_HDiv3DFiniteElement(int p)
: VectorFiniteElement(3, Geometry::CUBE, 3*(p + 1)*(p + 1)*(p + 2),
p, H_DIV,FunctionSpace::Qk),
NURBSFiniteElement(3),
shape_x(p + 1), shape_y(p + 1), shape_z(p + 1),
dshape_x(p + 1), dshape_y(p + 1), dshape_z(p + 1),
d2shape_x(p + 1), d2shape_y(p + 1), d2shape_z(p + 1),
shape1_x(p + 2), shape1_y(p + 2), shape1_z(p + 2),
dshape1_x(p + 2), dshape1_y(p + 2),dshape1_z(p + 2),
d2shape1_x(p + 2), d2shape1_y(p + 2), d2shape1_z(p + 2),
u(dof), du(dof,3)
{
orders[0] = orders[1] = orders[2] = p;
kv1.SetSize(dim);
kv1[0] = nullptr;
kv1[1] = nullptr;
kv1[2] = nullptr;
}
/// Construct the NURBS_HDiv3DFiniteElement with x-order @a px, y-order @a py and z-order @a pz
NURBS_HDiv3DFiniteElement(int px, int py, int pz)
: VectorFiniteElement(3, Geometry::CUBE,
(px + 2)*(py + 1)*(pz + 1) +
(px + 1)*(py + 2)*(pz + 1) +
(px + 1)*(py + 1)*(pz + 2),
std::max(px, py), H_DIV, FunctionSpace::Qk),
NURBSFiniteElement(3),
shape_x(px + 1), shape_y(py + 1), shape_z(pz + 1),
dshape_x(px + 1), dshape_y(py + 1), dshape_z(pz + 1),
d2shape_x(px + 1), d2shape_y(py + 1), d2shape_z(pz + 1),
shape1_x(px + 2), shape1_y(py + 2), shape1_z(pz + 2),
dshape1_x(px + 2), dshape1_y(py + 2),dshape1_z(pz + 2),
d2shape1_x(px + 2), d2shape1_y(py + 2), d2shape1_z(pz + 2),
u(dof), du(dof,3)
{
orders[0] = px; orders[1] = py; orders[2] = pz;
kv1.SetSize(dim);
kv1[0] = nullptr;
kv1[1] = nullptr;
kv1[2] = nullptr;
}
virtual void SetOrder() const;
virtual void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const;
/** @brief Evaluate the values of all shape functions of a *vector* finite
element in physical space at the point described by @a Trans. */
/** Each row of the result DenseMatrix @a shape contains the components of
one vector shape function. The size (#dof x SDim) of @a shape must be set
in advance, where SDim >= #dim is the physical space dimension as
described by @a Trans. */
virtual void CalcVShape(ElementTransformation &Trans,
DenseMatrix &shape) const;
/** @brief Evaluate the divergence of all shape functions of a *vector*
finite element in reference space at the given point @a ip. */
/** The size (#dof) of the result Vector @a divshape must be set in advance.
*/
virtual void CalcDivShape(const IntegrationPoint &ip,
Vector &divshape) const;
~NURBS_HDiv3DFiniteElement();
};
/** An arbitrary order H(curl)-conforming 2D NURBS element on a square
More details in the following paper:
[1] Annalisa Buffa, Giancarlo Sangalli, Rafael Vázquez
"Isogeometric analysis in electromagnetics: B-splines approximation."
Computer Methods in Applied Mechanics and Engineering (199) 1143-1152 */
class NURBS_HCurl2DFiniteElement : public VectorFiniteElement,
public NURBSFiniteElement
{
protected:
mutable Vector shape_x, shape_y, dshape_x, dshape_y, d2shape_x, d2shape_y;
mutable Vector shape1_x, shape1_y, dshape1_x, dshape1_y, d2shape1_x, d2shape1_y;
mutable Vector u;
mutable DenseMatrix du;
mutable Array <const KnotVector*> kv1;
public:
/// Construct the NURBS_HCurl2DFiniteElement of order @a p
NURBS_HCurl2DFiniteElement(int p)
: VectorFiniteElement(2, Geometry::SQUARE, 2*(p + 1)*(p + 2), p,
H_CURL,FunctionSpace::Qk),
NURBSFiniteElement(2),
shape_x(p + 1), shape_y(p + 1), dshape_x(p + 1),
dshape_y(p + 1), d2shape_x(p + 1), d2shape_y(p + 1),
shape1_x(p + 2), shape1_y(p + 2), dshape1_x(p + 2),
dshape1_y(p + 2), d2shape1_x(p + 2), d2shape1_y(p + 2),
u(dof), du(dof,2)
{
orders[0] = orders[1] = p;
kv1.SetSize(dim);
kv1[0] = nullptr;
kv1[1] = nullptr;
}
/// Construct the NURBS_HCurl2DFiniteElement with x-order @a px and y-order @a py
NURBS_HCurl2DFiniteElement(int px, int py)
: VectorFiniteElement(2, Geometry::SQUARE,
(px + 1)*(py + 2)+(px + 2)*(py + 1),
std::max(px, py), H_CURL, FunctionSpace::Qk),
NURBSFiniteElement(2),
shape_x(px + 1), shape_y(py + 1), dshape_x(px + 1),
dshape_y(py + 1), d2shape_x(px + 1), d2shape_y(py + 1),
shape1_x(px + 2), shape1_y(py + 2), dshape1_x(px + 2),
dshape1_y(py + 2), d2shape1_x(px + 2), d2shape1_y(py + 2),
u(dof), du(dof,2)
{
orders[0] = px; orders[1] = py;
kv1.SetSize(dim);
kv1[0] = nullptr;
kv1[1] = nullptr;
}
virtual void SetOrder() const;
virtual void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const;
/** @brief Evaluate the values of all shape functions of a *vector* finite
element in physical space at the point described by @a Trans. */
/** Each row of the result DenseMatrix @a shape contains the components of
one vector shape function. The size (#dof x SDim) of @a shape must be set
in advance, where SDim >= #dim is the physical space dimension as
described by @a Trans. */
virtual void CalcVShape(ElementTransformation &Trans,
DenseMatrix &shape) const;
/** @brief Evaluate the curl of all shape functions of a *vector* finite
element in reference space at the given point @a ip. */
/** Each row of the result DenseMatrix @a curl_shape contains the components
of the curl of one vector shape function. The size (#dof x CDim) of
@a curl_shape must be set in advance, where CDim = 3 for #dim = 3 and
CDim = 1 for #dim = 2. */
virtual void CalcCurlShape(const IntegrationPoint &ip,
DenseMatrix &curl_shape) const;
~NURBS_HCurl2DFiniteElement();
};
/** An arbitrary order H(curl)-conforming 3D NURBS element on a cube
More details in the following paper:
[1] Annalisa Buffa, Giancarlo Sangalli, Rafael Vázquez
"Isogeometric analysis in electromagnetics: B-splines approximation."
Computer Methods in Applied Mechanics and Engineering (199) 1143-1152 */
class NURBS_HCurl3DFiniteElement : public VectorFiniteElement,
public NURBSFiniteElement
{
protected:
mutable Vector shape_x, shape_y, shape_z;
mutable Vector dshape_x, dshape_y, dshape_z;
mutable Vector d2shape_x, d2shape_y, d2shape_z;
mutable Vector shape1_x, shape1_y, shape1_z;
mutable Vector dshape1_x, dshape1_y, dshape1_z;
mutable Vector d2shape1_x, d2shape1_y, d2shape1_z;
mutable Vector u;
mutable DenseMatrix du;
mutable Array <const KnotVector*> kv1;
public:
/// Construct the NURBS_HCurl3DFiniteElement of order @a p
NURBS_HCurl3DFiniteElement(int p)
: VectorFiniteElement(3, Geometry::CUBE, 3*(p + 1)*(p + 2)*(p + 2), p,
H_CURL,FunctionSpace::Qk),
NURBSFiniteElement(3),
shape_x(p + 1), shape_y(p + 1), shape_z(p + 1),
dshape_x(p + 1), dshape_y(p + 1), dshape_z(p + 1),
d2shape_x(p + 1), d2shape_y(p + 1), d2shape_z(p + 1),
shape1_x(p + 2), shape1_y(p + 2), shape1_z(p + 2),
dshape1_x(p + 2), dshape1_y(p + 2),dshape1_z(p + 2),
d2shape1_x(p + 2), d2shape1_y(p + 2), d2shape1_z(p + 2),
u(dof), du(dof,3)
{
orders[0] = orders[1] = orders[2] = p;
kv1.SetSize(dim);
kv1[0] = nullptr;
kv1[1] = nullptr;
kv1[2] = nullptr;
}
/// Construct the NURBS_HCurl3DFiniteElement with x-order @a px, y-order @a py and z-order @a pz
NURBS_HCurl3DFiniteElement(int px, int py, int pz)
: VectorFiniteElement(3, Geometry::CUBE,
(px + 1)*(py + 2)*(pz + 2) +
(px + 2)*(py + 1)*(pz + 2) +
(px + 2)*(py + 2)*(pz + 1),
std::max(std::max(px, py), pz), H_CURL, FunctionSpace::Qk),
NURBSFiniteElement(3),
shape_x(px + 1), shape_y(py + 1), shape_z(pz + 1),
dshape_x(px + 1), dshape_y(py + 1), dshape_z(pz + 1),
d2shape_x(px + 1), d2shape_y(py + 1), d2shape_z(pz + 1),
shape1_x(px + 2), shape1_y(py + 2), shape1_z(pz + 2),
dshape1_x(px + 2), dshape1_y(py + 2),dshape1_z(pz + 2),
d2shape1_x(px + 2), d2shape1_y(py + 2), d2shape1_z(pz + 2),
u(dof), du(dof,3)
{
orders[0] = px; orders[1] = py; orders[2] = pz;
kv1.SetSize(dim);
kv1[0] = nullptr;
kv1[1] = nullptr;
kv1[2] = nullptr;
}
virtual void SetOrder() const;
virtual void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const;
/** @brief Evaluate the values of all shape functions of a *vector* finite
element in physical space at the point described by @a Trans. */
/** Each row of the result DenseMatrix @a shape contains the components of
one vector shape function. The size (#dof x SDim) of @a shape must be set
in advance, where SDim >= #dim is the physical space dimension as
described by @a Trans. */
virtual void CalcVShape(ElementTransformation &Trans,
DenseMatrix &shape) const;
/** @brief Evaluate the curl of all shape functions of a *vector* finite
element in reference space at the given point @a ip. */
/** Each row of the result DenseMatrix @a curl_shape contains the components
of the curl of one vector shape function. The size (#dof x CDim) of
@a curl_shape must be set in advance, where CDim = 3 for #dim = 3 and
CDim = 1 for #dim = 2. */
virtual void CalcCurlShape(const IntegrationPoint &ip,
DenseMatrix &curl_shape) const;
~NURBS_HCurl3DFiniteElement();
};
} // namespace mfem
#endif
+214
View File
@@ -344,6 +344,32 @@ FiniteElementCollection *FiniteElementCollection::New(const char *name)
{
fec = new Local_FECollection(name + 6);
}
else if (!strncmp(name, "NURBS_HDiv", 10))
{
if (name[10] != '\0')
{
// "NURBS" + "number" --> fixed order nurbs collection
fec = new NURBS_HDivFECollection(atoi(name + 10));
}
else
{
// "NURBS" --> variable order nurbs collection
fec = new NURBS_HDivFECollection();
}
}
else if (!strncmp(name, "NURBS_HCurl", 11))
{
if (name[11] != '\0')
{
// "NURBS" + "number" --> fixed order nurbs collection
fec = new NURBS_HCurlFECollection(atoi(name + 11));
}
else
{
// "NURBS" --> variable order nurbs collection
fec = new NURBS_HCurlFECollection();
}
}
else if (!strncmp(name, "NURBS", 5))
{
if (name[5] != '\0')
@@ -3533,4 +3559,192 @@ FiniteElementCollection *NURBSFECollection::GetTraceCollection() const
return NULL;
}
NURBS_HDivFECollection::NURBS_HDivFECollection(int Order, const int dim)
: NURBSFECollection((Order == VariableOrder) ? 1 : Order)
{
const int order = (Order == VariableOrder) ? 1 : Order;
SegmentFE = new NURBS1DFiniteElement(order);
QuadrilateralFE = new NURBS2DFiniteElement(order);
QuadrilateralVFE = new NURBS_HDiv2DFiniteElement(order);
ParallelepipedVFE = new NURBS_HDiv3DFiniteElement(order);
if (dim != -1) { SetDim(dim); }
SetOrder(Order);
}
void NURBS_HDivFECollection::SetDim(int dim)
{
if (dim == 2)
{
sFE = SegmentFE;
qFE = QuadrilateralVFE;
hFE = nullptr;
}
else if (dim == 3)
{
sFE = nullptr;
qFE = QuadrilateralFE;
hFE = ParallelepipedVFE;
}
else
{
mfem::err<<"Dimension = "<<dim<<endl;
mfem_error ("NURBS_HDivFECollection: wrong dimension!");
}
}
NURBS_HDivFECollection::~NURBS_HDivFECollection()
{
delete SegmentFE;
delete QuadrilateralFE;
delete QuadrilateralVFE;
delete ParallelepipedVFE;
}
const FiniteElement *
NURBS_HDivFECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
{
switch (GeomType)
{
case Geometry::SEGMENT: return sFE;
case Geometry::SQUARE: return qFE;
case Geometry::CUBE: return hFE;
default:
if (error_mode == RETURN_NULL) { return nullptr; }
mfem_error ("NURBS_HDivFECollection: unknown geometry type.");
}
return QuadrilateralFE; // Make some compilers happy
}
void NURBS_HDivFECollection::SetOrder(int Order) const
{
mOrder = Order;
if (Order != VariableOrder)
{
snprintf(name, 16, "NURBS_HDiv%i", Order);
}
else
{
snprintf(name, 16, "NURBS_HDiv");
}
}
int NURBS_HDivFECollection::DofForGeometry(Geometry::Type GeomType) const
{
mfem_error("NURBS_HDivFECollection::DofForGeometry");
return 0; // Make some compilers happy
}
const int *NURBS_HDivFECollection::DofOrderForOrientation(
Geometry::Type GeomType,
int Or) const
{
mfem_error("NURBS_HDivFECollection::DofOrderForOrientation");
return NULL;
}
FiniteElementCollection *NURBS_HDivFECollection::GetTraceCollection() const
{
MFEM_ABORT("NURBS finite elements can not be statically condensed!");
return NULL;
}
NURBS_HCurlFECollection::NURBS_HCurlFECollection(int Order, const int dim)
: NURBSFECollection((Order == VariableOrder) ? 1 : Order)
{
const int order = (Order == VariableOrder) ? 1 : Order;
SegmentFE = new NURBS1DFiniteElement(order+1);
QuadrilateralFE = new NURBS2DFiniteElement(order+1);
QuadrilateralVFE = new NURBS_HCurl2DFiniteElement(order);
ParallelepipedVFE = new NURBS_HCurl3DFiniteElement(order);
if (dim != -1) { SetDim(dim); }
SetOrder(Order);
}
void NURBS_HCurlFECollection::SetDim(int dim)
{
if (dim == 2)
{
sFE = SegmentFE;
qFE = QuadrilateralVFE;
hFE = nullptr;
}
else if (dim == 3)
{
sFE = nullptr;
qFE = QuadrilateralFE;
hFE = ParallelepipedVFE;
}
else
{
mfem::err<<"Dimension = "<<dim<<endl;
mfem_error ("NURBS_HCurlFECollection: wrong dimension!");
}
}
NURBS_HCurlFECollection::~NURBS_HCurlFECollection()
{
delete SegmentFE;
delete QuadrilateralFE;
delete QuadrilateralVFE;
delete ParallelepipedVFE;
}
const FiniteElement *
NURBS_HCurlFECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
{
switch (GeomType)
{
case Geometry::SEGMENT: return sFE;
case Geometry::SQUARE: return qFE;
case Geometry::CUBE: return hFE;
default:
if (error_mode == RETURN_NULL) { return nullptr; }
mfem_error ("NURBS_HCurlFECollection: unknown geometry type.");
}
return QuadrilateralFE; // Make some compilers happy
}
void NURBS_HCurlFECollection::SetOrder(int Order) const
{
mOrder = Order;
if (Order != VariableOrder)
{
snprintf(name, 16, "NURBS_HCurl%i", Order);
}
else
{
snprintf(name, 16, "NURBS_HCurl");
}
}
int NURBS_HCurlFECollection::DofForGeometry(Geometry::Type GeomType) const
{
mfem_error("NURBS_HCurlFECollection::DofForGeometry");
return 0; // Make some compilers happy
}
const int *NURBS_HCurlFECollection::DofOrderForOrientation(
Geometry::Type GeomType,
int Or) const
{
mfem_error("NURBS_HCurlFECollection::DofOrderForOrientation");
return NULL;
}
FiniteElementCollection *NURBS_HCurlFECollection::GetTraceCollection() const
{
MFEM_ABORT("NURBS finite elements can not be statically condensed!");
return NULL;
}
}
+109 -4
View File
@@ -680,8 +680,8 @@ public:
/// Arbitrary order non-uniform rational B-splines (NURBS) finite elements.
class NURBSFECollection : public FiniteElementCollection
{
private:
PointFiniteElement *PointFE;
protected:
PointFiniteElement *PointFE;
NURBS1DFiniteElement *SegmentFE;
NURBS2DFiniteElement *QuadrilateralFE;
NURBS3DFiniteElement *ParallelepipedFE;
@@ -701,13 +701,15 @@ public:
order, or VariableOrder (default). */
explicit NURBSFECollection(int Order = VariableOrder);
void Reset() const
virtual void Reset() const
{
SegmentFE->Reset();
QuadrilateralFE->Reset();
ParallelepipedFE->Reset();
}
virtual void SetDim(const int dim) {};
/** @brief Get the order of the NURBS collection: either a positive number,
when using fixed order, or VariableOrder. */
/** @note Not to be confused with FiniteElementCollection::GetOrder(). */
@@ -715,7 +717,7 @@ public:
/** @brief Set the order and the name, based on the given @a Order: either a
positive number for fixed order, or VariableOrder. */
void SetOrder(int Order) const;
virtual void SetOrder(int Order) const;
const FiniteElement *
FiniteElementForGeometry(Geometry::Type GeomType) const override;
@@ -734,6 +736,109 @@ public:
virtual ~NURBSFECollection();
};
/// Arbitrary order H(div) NURBS finite elements.
class NURBS_HDivFECollection : public NURBSFECollection
{
private:
NURBS1DFiniteElement *SegmentFE;
NURBS2DFiniteElement *QuadrilateralFE;
NURBS_HDiv2DFiniteElement *QuadrilateralVFE;
NURBS_HDiv3DFiniteElement *ParallelepipedVFE;
FiniteElement *sFE;
FiniteElement *qFE;
FiniteElement *hFE;
public:
/** @brief The parameter @a Order must be either a positive number, for fixed
order, or VariableOrder (default). */
explicit NURBS_HDivFECollection(int Order = VariableOrder, const int vdim = -1);
virtual void Reset() const override
{
SegmentFE->Reset();
QuadrilateralFE->Reset();
QuadrilateralVFE->Reset();
ParallelepipedVFE->Reset();
}
virtual void SetDim(const int dim) override;
/** @brief Set the order and the name, based on the given @a Order: either a
positive number for fixed order, or VariableOrder. */
virtual void SetOrder(int Order) const override;
const FiniteElement *
FiniteElementForGeometry(Geometry::Type GeomType) const override;
int DofForGeometry(Geometry::Type GeomType) const override;
const int *DofOrderForOrientation(Geometry::Type GeomType,
int Or) const override;
const char *Name() const override { return name; }
int GetContType() const override { return CONTINUOUS; }
FiniteElementCollection *GetTraceCollection() const override;
virtual ~NURBS_HDivFECollection();
};
/// Arbitrary order H(curl) NURBS finite elements.
class NURBS_HCurlFECollection : public NURBSFECollection
{
private:
NURBS1DFiniteElement *SegmentFE;
NURBS2DFiniteElement *QuadrilateralFE;
NURBS_HCurl2DFiniteElement *QuadrilateralVFE;
NURBS_HCurl3DFiniteElement *ParallelepipedVFE;
FiniteElement *sFE;
FiniteElement *qFE;
FiniteElement *hFE;
public:
/** @brief The parameter @a Order must be either a positive number, for fixed
order, or VariableOrder (default). */
explicit NURBS_HCurlFECollection(int Order = VariableOrder,
const int vdim = -1);
virtual void Reset() const override
{
SegmentFE->Reset();
QuadrilateralFE->Reset();
QuadrilateralVFE->Reset();
ParallelepipedVFE->Reset();
}
virtual void SetDim(const int dim) override;
/** @brief Set the order and the name, based on the given @a Order: either a
positive number for fixed order, or VariableOrder. */
virtual void SetOrder(int Order) const override;
const FiniteElement *
FiniteElementForGeometry(Geometry::Type GeomType) const override;
int DofForGeometry(Geometry::Type GeomType) const override;
const int *DofOrderForOrientation(Geometry::Type GeomType,
int Or) const override;
const char *Name() const override { return name; }
int GetContType() const override { return CONTINUOUS; }
FiniteElementCollection *GetTraceCollection() const override;
virtual ~NURBS_HCurlFECollection();
};
/// Piecewise-(bi/tri)linear continuous finite elements.
class LinearFECollection : public FiniteElementCollection
{
+263 -38
View File
@@ -1525,6 +1525,67 @@ SparseMatrix *FiniteElementSpace::RefinementMatrix_main(
return P;
}
SparseMatrix *FiniteElementSpace::VariableOrderRefinementMatrix(
const int coarse_ndofs, const Table &coarse_elem_dof) const
{
MFEM_VERIFY(mesh->GetLastOperation() == Mesh::REFINE, "");
Array<int> dofs, coarse_dofs, coarse_vdofs;
Vector row;
Mesh::GeometryList elem_geoms(*mesh);
SparseMatrix *P = new SparseMatrix(GetVSize(), coarse_ndofs*vdim);
Array<int> mark(P->Height());
mark = 0;
const CoarseFineTransformations &rtrans = mesh->GetRefinementTransforms();
DenseMatrix lP;
IsoparametricTransformation isotr;
for (int k = 0; k < mesh->GetNE(); k++)
{
const Embedding &emb = rtrans.embeddings[k];
const Geometry::Type geom = mesh->GetElementBaseGeometry(k);
const FiniteElement *fe = GetFE(k);
isotr.SetIdentityTransformation(geom);
const int ldof = fe->GetDof();
lP.SetSize(ldof, ldof);
const DenseTensor &pmats = rtrans.point_matrices[geom];
isotr.SetPointMat(pmats(emb.matrix));
fe->GetLocalInterpolation(isotr, lP);
const int fine_ldof = lP.Height();
elem_dof->GetRow(k, dofs);
coarse_elem_dof.GetRow(emb.parent, coarse_dofs);
for (int vd = 0; vd < vdim; vd++)
{
coarse_dofs.Copy(coarse_vdofs);
DofsToVDofs(vd, coarse_vdofs, coarse_ndofs);
for (int i = 0; i < fine_ldof; i++)
{
const int r = DofToVDof(dofs[i], vd);
int m = (r >= 0) ? r : (-1 - r);
if (!mark[m])
{
lP.GetRow(i, row);
P->SetRow(r, coarse_vdofs, row);
mark[m] = 1;
}
}
}
}
MFEM_VERIFY(mark.Sum() == P->Height(), "Not all rows of P set.");
P->Finalize();
return P;
}
void FiniteElementSpace::GetLocalRefinementMatrices(
Geometry::Type geom, DenseTensor &localP) const
{
@@ -1556,15 +1617,20 @@ SparseMatrix* FiniteElementSpace::RefinementMatrix(int old_ndofs,
"Previous mesh is not coarser.");
Mesh::GeometryList elem_geoms(*mesh);
DenseTensor localP[Geometry::NumGeom];
for (int i = 0; i < elem_geoms.Size(); i++)
if (!IsVariableOrder())
{
GetLocalRefinementMatrices(elem_geoms[i], localP[elem_geoms[i]]);
DenseTensor localP[Geometry::NumGeom];
for (int i = 0; i < elem_geoms.Size(); i++)
{
GetLocalRefinementMatrices(elem_geoms[i], localP[elem_geoms[i]]);
}
return RefinementMatrix_main(old_ndofs, *old_elem_dof, old_elem_fos,
localP);
}
else
{
return VariableOrderRefinementMatrix(old_ndofs, *old_elem_dof);
}
return RefinementMatrix_main(old_ndofs, *old_elem_dof, old_elem_fos,
localP);
}
FiniteElementSpace::RefinementOperator::RefinementOperator(
@@ -1582,9 +1648,12 @@ FiniteElementSpace::RefinementOperator::RefinementOperator(
Mesh::GeometryList elem_geoms(*fespace->GetMesh());
for (int i = 0; i < elem_geoms.Size(); i++)
if (!fespace->IsVariableOrder())
{
fespace->GetLocalRefinementMatrices(elem_geoms[i], localP[elem_geoms[i]]);
for (int i = 0; i < elem_geoms.Size(); i++)
{
fespace->GetLocalRefinementMatrices(elem_geoms[i], localP[elem_geoms[i]]);
}
}
ConstructDoFTransArray();
@@ -1597,10 +1666,13 @@ FiniteElementSpace::RefinementOperator::RefinementOperator(
{
Mesh::GeometryList elem_geoms(*fespace->GetMesh());
for (int i = 0; i < elem_geoms.Size(); i++)
if (!fespace->IsVariableOrder())
{
fespace->GetLocalRefinementMatrices(*coarse_fes, elem_geoms[i],
localP[elem_geoms[i]]);
for (int i = 0; i < elem_geoms.Size(); i++)
{
fespace->GetLocalRefinementMatrices(*coarse_fes, elem_geoms[i],
localP[elem_geoms[i]]);
}
}
// Make a copy of the coarse elem_dof Table.
@@ -1676,11 +1748,25 @@ void FiniteElementSpace::RefinementOperator::Mult(const Vector &x,
Vector subY, subX;
DenseMatrix eP;
IsoparametricTransformation isotr;
for (int k = 0; k < mesh_ref->GetNE(); k++)
{
const Embedding &emb = trans_ref.embeddings[k];
const Geometry::Type geom = mesh_ref->GetElementBaseGeometry(k);
const DenseMatrix &lP = localP[geom](emb.matrix);
if (fespace->IsVariableOrder())
{
const FiniteElement *fe = fespace->GetFE(k);
isotr.SetIdentityTransformation(geom);
const int ldof = fe->GetDof();
eP.SetSize(ldof, ldof);
const DenseTensor &pmats = trans_ref.point_matrices[geom];
isotr.SetPointMat(pmats(emb.matrix));
fe->GetLocalInterpolation(isotr, eP);
}
const DenseMatrix &lP = (fespace->IsVariableOrder()) ? eP : localP[geom](
emb.matrix);
subY.SetSize(lP.Height());
@@ -1745,11 +1831,28 @@ void FiniteElementSpace::RefinementOperator::MultTranspose(const Vector &x,
Vector subY, subX, subYt;
DenseMatrix eP;
IsoparametricTransformation isotr;
const FiniteElement *fe = nullptr;
for (int k = 0; k < mesh_ref->GetNE(); k++)
{
const Embedding &emb = trans_ref.embeddings[k];
const Geometry::Type geom = mesh_ref->GetElementBaseGeometry(k);
const DenseMatrix &lP = localP[geom](emb.matrix);
if (fespace->IsVariableOrder())
{
fe = fespace->GetFE(k);
isotr.SetIdentityTransformation(geom);
const int ldof = fe->GetDof();
eP.SetSize(ldof);
const DenseTensor &pmats = trans_ref.point_matrices[geom];
isotr.SetPointMat(pmats(emb.matrix));
fe->GetLocalInterpolation(isotr, eP);
}
const DenseMatrix &lP = (fespace->IsVariableOrder()) ? eP : localP[geom](
emb.matrix);
DofTransformation *doftrans = fespace->GetElementDofs(k, f_dofs);
old_elem_dof->GetRow(emb.parent, c_dofs);
@@ -2108,9 +2211,12 @@ SparseMatrix* FiniteElementSpace::DerefinementMatrix(int old_ndofs,
Mesh::GeometryList elem_geoms(*mesh);
DenseTensor localR[Geometry::NumGeom];
for (int i = 0; i < elem_geoms.Size(); i++)
if (!IsVariableOrder())
{
GetLocalDerefinementMatrices(elem_geoms[i], localR[elem_geoms[i]]);
for (int i = 0; i < elem_geoms.Size(); i++)
{
GetLocalDerefinementMatrices(elem_geoms[i], localR[elem_geoms[i]]);
}
}
SparseMatrix *R = new SparseMatrix(ndofs*vdim, old_ndofs*vdim);
@@ -2125,14 +2231,34 @@ SparseMatrix* FiniteElementSpace::DerefinementMatrix(int old_ndofs,
bool is_dg = FEColl()->GetContType() == FiniteElementCollection::DISCONTINUOUS;
int num_marked = 0;
const FiniteElement *fe = nullptr;
DenseMatrix localRVO; //for variable order only
for (int k = 0; k < dtrans.embeddings.Size(); k++)
{
const Embedding &emb = dtrans.embeddings[k];
Geometry::Type geom = mesh->GetElementBaseGeometry(emb.parent);
DenseMatrix &lR = localR[geom](emb.matrix);
if (IsVariableOrder())
{
fe = GetFE(emb.parent);
const DenseTensor &pmats = dtrans.point_matrices[geom];
const int ldof = fe->GetDof();
IsoparametricTransformation isotr;
isotr.SetIdentityTransformation(geom);
localRVO.SetSize(ldof, ldof);
isotr.SetPointMat(pmats(emb.matrix));
// Local restriction is size ldofxldof assuming that the parent and
// child are of same polynomial order.
fe->GetLocalRestriction(isotr, localRVO);
}
DenseMatrix &lR = IsVariableOrder() ? localRVO : localR[geom](emb.matrix);
elem_dof->GetRow(emb.parent, dofs);
old_elem_dof->GetRow(k, old_dofs);
MFEM_VERIFY(old_dofs.Size() == dofs.Size(),
"Parent and child must have same #dofs.");
for (int vd = 0; vd < vdim; vd++)
{
@@ -2158,7 +2284,7 @@ SparseMatrix* FiniteElementSpace::DerefinementMatrix(int old_ndofs,
}
}
if (!is_dg)
if (!is_dg && !IsVariableOrder())
{
MFEM_VERIFY(num_marked == R->Height(),
"internal error: not all rows of R were set.");
@@ -2216,6 +2342,7 @@ void FiniteElementSpace::Constructor(Mesh *mesh_, NURBSExtension *NURBSext_,
const NURBSFECollection *nurbs_fec =
dynamic_cast<const NURBSFECollection *>(fec_);
if (nurbs_fec)
{
MFEM_VERIFY(mesh_->NURBSext, "NURBS FE space requires a NURBS mesh.");
@@ -2312,12 +2439,63 @@ void FiniteElementSpace::UpdateNURBS()
face_dof = NULL;
face_to_be.DeleteAll();
// Depending on the element type create the appropriate extensions
// for the individual components.
dynamic_cast<const NURBSFECollection *>(fec)->Reset();
ndofs = NURBSext->GetNDof();
elem_dof = NURBSext->GetElementDofTable();
bdr_elem_dof = NURBSext->GetBdrElementDofTable();
if (dynamic_cast<const NURBS_HDivFECollection *>(fec))
{
VNURBSext.SetSize(mesh->Dimension());
for (int d = 0; d < mesh->Dimension(); d++)
{
VNURBSext[d] = NURBSext->GetDivExtension(d);
}
}
if (dynamic_cast<const NURBS_HCurlFECollection *>(fec))
{
VNURBSext.SetSize(mesh->Dimension());
for (int d = 0; d < mesh->Dimension(); d++)
{
VNURBSext[d] = NURBSext->GetCurlExtension(d);
}
}
// If required: concatenate the dof tables of the individual components into
// one dof table for the vector fespace.
if (VNURBSext.Size() == 2)
{
int offset1 = VNURBSext[0]->GetNDof();
ndofs = VNURBSext[0]->GetNDof() + VNURBSext[1]->GetNDof();
// Merge Tables
elem_dof = new Table(*VNURBSext[0]->GetElementDofTable(),
*VNURBSext[1]->GetElementDofTable(),offset1 );
bdr_elem_dof = new Table(*VNURBSext[0]->GetBdrElementDofTable(),
*VNURBSext[1]->GetBdrElementDofTable(),offset1);
}
else if (VNURBSext.Size() == 3)
{
int offset1 = VNURBSext[0]->GetNDof();
int offset2 = offset1 + VNURBSext[1]->GetNDof();
ndofs = offset2 + VNURBSext[2]->GetNDof();
// Merge Tables
elem_dof = new Table(*VNURBSext[0]->GetElementDofTable(),
*VNURBSext[1]->GetElementDofTable(),offset1,
*VNURBSext[2]->GetElementDofTable(),offset2);
bdr_elem_dof = new Table(*VNURBSext[0]->GetBdrElementDofTable(),
*VNURBSext[1]->GetBdrElementDofTable(),offset1,
*VNURBSext[2]->GetBdrElementDofTable(),offset2);
}
else
{
ndofs = NURBSext->GetNDof();
elem_dof = NURBSext->GetElementDofTable();
bdr_elem_dof = NURBSext->GetBdrElementDofTable();
}
mesh_sequence = mesh->GetSequence();
sequence++;
}
@@ -3319,11 +3497,21 @@ void FiniteElementSpace::Destroy()
dof_elem_array.DeleteAll();
dof_ldof_array.DeleteAll();
for (int i = 0; i < VNURBSext.Size(); i++)
{
delete VNURBSext[i];
}
if (NURBSext)
{
if (own_ext) { delete NURBSext; }
delete face_dof;
face_to_be.DeleteAll();
if (VNURBSext.Size() > 0 )
{
delete elem_dof;
delete bdr_elem_dof;
}
}
else
{
@@ -3335,6 +3523,8 @@ void FiniteElementSpace::Destroy()
delete [] bdofs;
}
ceed::RemoveBasisAndRestriction(this);
}
void FiniteElementSpace::DestroyDoFTransArray()
@@ -3353,19 +3543,27 @@ void FiniteElementSpace::GetTransferOperator(
if (T.Type() == Operator::MFEM_SPARSEMAT)
{
Mesh::GeometryList elem_geoms(*mesh);
DenseTensor localP[Geometry::NumGeom];
for (int i = 0; i < elem_geoms.Size(); i++)
if (!IsVariableOrder())
{
GetLocalRefinementMatrices(coarse_fes, elem_geoms[i],
localP[elem_geoms[i]]);
Mesh::GeometryList elem_geoms(*mesh);
DenseTensor localP[Geometry::NumGeom];
for (int i = 0; i < elem_geoms.Size(); i++)
{
GetLocalRefinementMatrices(coarse_fes, elem_geoms[i],
localP[elem_geoms[i]]);
}
T.Reset(RefinementMatrix_main(coarse_fes.GetNDofs(),
coarse_fes.GetElementToDofTable(),
coarse_fes.
GetElementToFaceOrientationTable(),
localP));
}
else
{
T.Reset(VariableOrderRefinementMatrix(coarse_fes.GetNDofs(),
coarse_fes.GetElementToDofTable()));
}
T.Reset(RefinementMatrix_main(coarse_fes.GetNDofs(),
coarse_fes.GetElementToDofTable(),
coarse_fes.
GetElementToFaceOrientationTable(),
localP));
}
else
{
@@ -3416,19 +3614,33 @@ void FiniteElementSpace::GetTrueTransferOperator(
void FiniteElementSpace::UpdateElementOrders()
{
const CoarseFineTransformations &cf_tr = mesh->GetRefinementTransforms();
Array<char> new_order(mesh->GetNE());
switch (mesh->GetLastOperation())
{
case Mesh::REFINE:
{
const CoarseFineTransformations &cf_tr = mesh->GetRefinementTransforms();
for (int i = 0; i < mesh->GetNE(); i++)
{
new_order[i] = elem_order[cf_tr.embeddings[i].parent];
}
break;
}
case Mesh::DEREFINE:
{
const CoarseFineTransformations &cf_tr =
mesh->ncmesh->GetDerefinementTransforms();
Table coarse_to_fine;
cf_tr.MakeCoarseToFineTable(coarse_to_fine);
Array<int> tabrow;
for (int i = 0; i < coarse_to_fine.Size(); i++)
{
coarse_to_fine.GetRow(i, tabrow);
//For now we require that all children are of same polynomial order.
new_order[i] = elem_order[tabrow[0]];
}
break;
}
default:
MFEM_ABORT("not implemented yet");
}
@@ -3523,11 +3735,23 @@ void FiniteElementSpace::Update(bool want_transform)
{
BuildConformingInterpolation();
Th.Reset(DerefinementMatrix(old_ndofs, old_elem_dof, old_elem_fos));
if (cP && cR)
if (IsVariableOrder())
{
Th.SetOperatorOwner(false);
Th.Reset(new TripleProductOperator(cP.get(), cR.get(), Th.Ptr(),
false, false, true));
if (cP && cR_hp)
{
Th.SetOperatorOwner(false);
Th.Reset(new TripleProductOperator(cP.get(), cR_hp.get(), Th.Ptr(),
false, false, true));
}
}
else
{
if (cP && cR)
{
Th.SetOperatorOwner(false);
Th.Reset(new TripleProductOperator(cP.get(), cR.get(), Th.Ptr(),
false, false, true));
}
}
break;
}
@@ -3640,6 +3864,7 @@ FiniteElementCollection *FiniteElementSpace::Load(Mesh *m, std::istream &input)
input >> ord;
NURBSFECollection *nurbs_fec = dynamic_cast<NURBSFECollection*>(r_fec);
if (nurbs_fec) { nurbs_fec->SetDim(m->Dimension()); }
NURBSExtension *nurbs_ext = NULL;
if (fes_format == 90) // original format, v0.9
{
+11
View File
@@ -268,6 +268,10 @@ protected:
Array<int> dof_elem_array, dof_ldof_array;
NURBSExtension *NURBSext;
/** array of NURBS extension for H(div) and H(curl) vector elements.
For each direction an extension is created from the base NURBSext,
with an increase in order in the appropriate direction. */
Array<NURBSExtension*> VNURBSext;
int own_ext;
mutable Array<int> face_to_be; // NURBS FE space only
@@ -469,6 +473,11 @@ protected:
const Table *coarse_elem_fos,
const DenseTensor localP[]) const;
/* This method returns the Refinement matrix (i.e., the embedding)
from a coarse variable-order fes to a fine fes (after a geometric refinement) */
SparseMatrix *VariableOrderRefinementMatrix(const int coarse_ndofs,
const Table &coarse_elem_dof) const;
void GetLocalRefinementMatrices(Geometry::Type geom,
DenseTensor &localP) const;
void GetLocalDerefinementMatrices(Geometry::Type geom,
@@ -517,6 +526,8 @@ protected:
const Array<int> *perm);
public:
/** @brief Default constructor: the object is invalid until initialized using
the method Load(). */
FiniteElementSpace();
+86 -23
View File
@@ -12,6 +12,8 @@
// Implementation of GridFunction
#include "gridfunc.hpp"
#include "linearform.hpp"
#include "bilinearform.hpp"
#include "quadinterpolator.hpp"
#include "../mesh/nurbs.hpp"
#include "../general/text.hpp"
@@ -2372,19 +2374,48 @@ void GridFunction::ProjectCoefficient(Coefficient &coeff)
if (delta_c == NULL)
{
Array<int> vdofs;
Vector vals;
for (int i = 0; i < fes->GetNE(); i++)
if (fes->GetNURBSext() == NULL)
{
doftrans = fes->GetElementVDofs(i, vdofs);
vals.SetSize(vdofs.Size());
fes->GetFE(i)->Project(coeff, *fes->GetElementTransformation(i), vals);
if (doftrans)
Array<int> vdofs;
Vector vals;
for (int i = 0; i < fes->GetNE(); i++)
{
doftrans->TransformPrimal(vals);
doftrans = fes->GetElementVDofs(i, vdofs);
vals.SetSize(vdofs.Size());
fes->GetFE(i)->Project(coeff, *fes->GetElementTransformation(i), vals);
if (doftrans)
{
doftrans->TransformPrimal(vals);
}
SetSubVector(vdofs, vals);
}
SetSubVector(vdofs, vals);
}
else
{
// Define and assemble linear form
LinearForm b(fes);
b.AddDomainIntegrator(new DomainLFIntegrator(coeff));
b.Assemble();
// Define and assemble bilinear form
BilinearForm a(fes);
a.AddDomainIntegrator(new MassIntegrator());
a.Assemble();
// Set solver and preconditioner
SparseMatrix A(a.SpMat());
GSSmoother prec(A);
CGSolver cg;
cg.SetOperator(A);
cg.SetPreconditioner(prec);
cg.SetRelTol(1e-12);
cg.SetMaxIter(1000);
cg.SetPrintLevel(0);
// Solve and get solution
*this = 0.0;
cg.Mult(b,*this);
}
}
else
@@ -2425,22 +2456,54 @@ void GridFunction::ProjectCoefficient(
void GridFunction::ProjectCoefficient(VectorCoefficient &vcoeff)
{
int i;
Array<int> vdofs;
Vector vals;
DofTransformation * doftrans = NULL;
for (i = 0; i < fes->GetNE(); i++)
if (fes->GetNURBSext() == NULL)
{
doftrans = fes->GetElementVDofs(i, vdofs);
vals.SetSize(vdofs.Size());
fes->GetFE(i)->Project(vcoeff, *fes->GetElementTransformation(i), vals);
if (doftrans)
int i;
Array<int> vdofs;
Vector vals;
DofTransformation * doftrans = NULL;
for (i = 0; i < fes->GetNE(); i++)
{
doftrans->TransformPrimal(vals);
doftrans = fes->GetElementVDofs(i, vdofs);
vals.SetSize(vdofs.Size());
fes->GetFE(i)->Project(vcoeff, *fes->GetElementTransformation(i), vals);
if (doftrans)
{
doftrans->TransformPrimal(vals);
}
SetSubVector(vdofs, vals);
}
SetSubVector(vdofs, vals);
}
else
{
// Define and assemble linear form
LinearForm b(fes);
b.AddDomainIntegrator(new VectorFEDomainLFIntegrator(vcoeff));
b.Assemble();
// Define and assemble bilinear form
BilinearForm a(fes);
a.AddDomainIntegrator(new VectorFEMassIntegrator());
a.Assemble();
// Set solver and preconditioner
SparseMatrix A(a.SpMat());
GSSmoother prec(A);
CGSolver cg;
cg.SetOperator(A);
cg.SetPreconditioner(prec);
cg.SetRelTol(1e-12);
cg.SetMaxIter(1000);
cg.SetPrintLevel(0);
// Solve and get solution
*this = 0.0;
cg.Mult(b,*this);
}
}
+4 -2
View File
@@ -387,7 +387,8 @@ public:
/** @brief Project @a coeff Coefficient to @a this GridFunction. The
projection computation depends on the choice of the FiniteElementSpace
#fes. Note that this is usually interpolation at the degrees of freedom
in each element (not L2 projection). */
in each element (not L2 projection). For NURBS spaces these degrees of
freedom are not available and L2 projection is resorted to as fallback. */
virtual void ProjectCoefficient(Coefficient &coeff);
/** @brief Project @a coeff Coefficient to @a this GridFunction, using one
@@ -398,7 +399,8 @@ public:
/** @brief Project @a vcoeff VectorCoefficient to @a this GridFunction. The
projection computation depends on the choice of the FiniteElementSpace
#fes. Note that this is usually interpolation at the degrees of freedom
in each element (not L2 projection).*/
in each element (not L2 projection). For NURBS spaces these degrees of
freedom are not available and L2 projection is resorted to as fallback. */
void ProjectCoefficient(VectorCoefficient &vcoeff);
/** @brief Project @a vcoeff VectorCoefficient to @a this GridFunction, using
+114
View File
@@ -1168,6 +1168,120 @@ void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
} // parallel
}
void FindPointsGSLIB::DistributePointInfoToOwningMPIRanks(
Array<unsigned int> &recv_elem, Vector &recv_ref,
Array<unsigned int> &recv_code)
{
MFEM_VERIFY(points_cnt,
"Invalid size. Please make sure to call FindPoints method "
"before calling this function.");
// Pack data to send via crystal router
struct gslib::array *outpt = new gslib::array;
struct out_pt { double rst[3]; uint index, elem, proc, code; };
struct out_pt *pt;
array_init(struct out_pt, outpt, points_cnt);
outpt->n=points_cnt;
pt = (struct out_pt *)outpt->ptr;
for (int index = 0; index < points_cnt; index++)
{
pt->index = index;
pt->elem = gsl_mfem_elem[index];
pt->proc = gsl_proc[index];
pt->code = gsl_code[index];
for (int d = 0; d < dim; ++d)
{
pt->rst[d]= gsl_mfem_ref(index*dim + d);
}
++pt;
}
// Transfer data to target MPI ranks
sarray_transfer(struct out_pt, outpt, proc, 1, cr);
// Store received data
const int points_recv = outpt->n;
recv_proc.SetSize(points_recv);
recv_elem.SetSize(points_recv);
recv_index.SetSize(points_recv);
recv_code.SetSize(points_recv);
recv_ref.SetSize(points_recv*dim);
pt = (struct out_pt *)outpt->ptr;
for (int index = 0; index < points_recv; index++)
{
recv_index[index] = pt->index;
recv_elem[index] = pt->elem;
recv_proc[index] = pt->proc;
recv_code[index] = pt->code;
for (int d = 0; d < dim; ++d)
{
recv_ref(index*dim + d)= pt->rst[d];
}
++pt;
}
array_free(outpt);
delete outpt;
}
void FindPointsGSLIB::DistributeInterpolatedValues(const Vector &int_vals,
const int vdim,
const int ordering,
Vector &field_out) const
{
const int points_recv = recv_index.Size();;
MFEM_VERIFY(points_recv == 0 ||
int_vals.Size() % points_recv == 0,
"Incompatible size. Please return interpolated values"
"corresponding to points received using"
"SendCoordinatesToOwningProcessors.");
field_out.SetSize(points_cnt*vdim);
for (int v = 0; v < vdim; v++)
{
// Pack data to send via crystal router
struct gslib::array *outpt = new gslib::array;
struct out_pt { double val; uint index, proc; };
struct out_pt *pt;
array_init(struct out_pt, outpt, points_recv);
outpt->n=points_recv;
pt = (struct out_pt *)outpt->ptr;
for (int index = 0; index < points_recv; index++)
{
pt->index = recv_index[index];
pt->proc = recv_proc[index];
pt->val = ordering == Ordering::byNODES ?
int_vals(index + v*points_recv) :
int_vals(index*vdim + v);
++pt;
}
// Transfer data to target MPI ranks
sarray_transfer(struct out_pt, outpt, proc, 1, cr);
// Store received data
MFEM_VERIFY(outpt->n == points_cnt, "Incompatible size. Number of points "
"received does not match the number of points originally "
"found using FindPoints.");
pt = (struct out_pt *)outpt->ptr;
for (int index = 0; index < points_cnt; index++)
{
int idx = ordering == Ordering::byNODES ?
pt->index + v*points_cnt :
pt->index*vdim + v;
field_out(idx) = pt->val;
++pt;
}
array_free(outpt);
delete outpt;
}
}
void OversetFindPointsGSLIB::Setup(Mesh &m, const int meshid,
GridFunction *gfmax,
const double bb_t, const double newt_tol,
+66 -19
View File
@@ -34,7 +34,7 @@ namespace mfem
*
* There are three key functions in FindPointsGSLIB:
*
* 1. Setup - constructs the internal data structures of gslib.
* 1. Setup - constructs the internal data structures of gslib. See \ref Setup.
*
* 2. FindPoints - for any given arbitrary set of points in physical space,
* gslib finds the element number, MPI rank, and the reference space
@@ -45,12 +45,23 @@ namespace mfem
* on an element edge/face or near the domain boundary, and gslib also
* returns a distance to the border. Points near (but outside) the domain
* boundary must then be marked as not found using the distance returned
* by gslib.
* by gslib. See \ref FindPoints.
*
* 3. Interpolate - Interpolates any grid function at the points found using 2.
* For functions in L2 finite element space, use \ref SetL2AvgType to
* specify how to interpolate values at points located at element boundaries
* where the function might be multi-valued. See \ref Interpolate.
*
* FindPointsGSLIB provides interface to use these functions individually or
* using a single call.
* FindPointsGSLIB also provides interface to use these functions through a
* single call.
*
* For custom interpolation (e.g., evaluating strain rate tensor), we provide
* functions that use gslib to send element index and corresponding
* reference-space coordinates for each point to the mpi rank that the element
* is located on. Then, custom interpolation can be defined locally by the user
* before sending the values back to mpi ranks where the query originated from.
* See \ref DistributePointInfoToOwningMPIRanks and
* \ref DistributeInterpolatedValues.
*/
class FindPointsGSLIB
{
@@ -74,7 +85,8 @@ protected:
int dim, points_cnt;
Array<unsigned int> gsl_code, gsl_proc, gsl_elem, gsl_mfem_elem;
Vector gsl_mesh, gsl_ref, gsl_dist, gsl_mfem_ref;
bool setupflag; // flag to indicate whether gslib data has been setup
Array<unsigned int> recv_proc, recv_index; // data for custom interpolation
bool setupflag; // flag to indicate if gslib data has been setup
double default_interp_value; // used for points that are not found in the mesh
AvgType avgtype; // average type used for L2 functions
Array<int> split_element_map;
@@ -118,9 +130,9 @@ public:
virtual ~FindPointsGSLIB();
/** Initializes the internal mesh in gslib, by sending the positions of the
Gauss-Lobatto nodes of the input Mesh object @a m.
Gauss-Lobatto nodes of the input Mesh object \p m.
Note: not tested with periodic (L2).
Note: the input mesh @a m must have Nodes set.
Note: the input mesh \p m must have Nodes set.
@param[in] m Input mesh.
@param[in] bb_t (Optional) Relative size of bounding box around
@@ -133,9 +145,9 @@ public:
void Setup(Mesh &m, const double bb_t = 0.1,
const double newt_tol = 1.0e-12,
const int npt_max = 256);
/** Searches positions given in physical space by @a point_pos.
/** Searches positions given in physical space by \p point_pos.
These positions can be ordered byNodes: (XXX...,YYY...,ZZZ) or
byVDim: (XYZ,XYZ,....XYZ) specified by @a point_pos_ordering.
byVDim: (XYZ,XYZ,....XYZ) specified by \p point_pos_ordering.
This function populates the following member variables:
#gsl_code Return codes for each point: inside element (0),
element boundary (1), not found (2).
@@ -164,20 +176,20 @@ public:
/** Interpolation of field values at prescribed reference space positions.
@param[in] field_in Function values that will be interpolated on the
reference positions. Note: it is assumed that
@a field_in is in H1 and in the same space as the
\p field_in is in H1 and in the same space as the
mesh that was given to Setup().
@param[out] field_out Interpolated values. For points that are not found
the value is set to #default_interp_value. */
virtual void Interpolate(const GridFunction &field_in, Vector &field_out);
/** Search positions and interpolate. The ordering (byNODES or byVDIM) of
the output values in @a field_out corresponds to the ordering used
in the input GridFunction @a field_in. */
the output values in \p field_out corresponds to the ordering used
in the input GridFunction \p field_in. */
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
Vector &field_out,
int point_pos_ordering = Ordering::byNODES);
/** Setup FindPoints, search positions and interpolate. The ordering (byNODES
or byVDIM) of the output values in @a field_out corresponds to the
ordering used in the input GridFunction @a field_in. */
or byVDIM) of the output values in \p field_out corresponds to the
ordering used in the input GridFunction \p field_in. */
void Interpolate(Mesh &m, const Vector &point_pos,
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering = Ordering::byNODES);
@@ -225,6 +237,41 @@ public:
/// Return reference coordinates in [-1,1] (internal range in GSLIB) for each
/// point found by FindPoints.
virtual const Vector &GetGSLIBReferencePosition() const { return gsl_ref; }
/** @name Methods to support a custom interpolation procedure.
\brief The physical-space point that the user seeks to interpolate at
could be located inside an element on another mpi rank.
To enable a custom interpolation procedure (e.g., strain tensor computation)
we need a mechanism to first send element indices and reference-space
coordinates to the mpi-ranks where each point is found. Then the custom
interpolation can be done locally by the user before sending the
interpolated values back to the mpi-ranks that the query originated from.
Example usage looks something like this:
FindPoints() -> DistributePointInfoToOwningMPIRanks() -> Computation by
user -> DistributeInterpolatedValues().
*/
///@{
/// Distribute element indices in #gsl_mfem_elem, the reference coordinates
/// #gsl_mfem_ref, and the code #gsl_code to the corresponding mpi-rank
/// #gsl_proc for each point. The received information is provided locally
/// in \p recv_elem, \p recv_ref (ordered by vdim), and \p recv_code.
/// Note: The user can send empty Array/Vectors to the method as they are
/// appropriately sized and filled internally.
virtual void DistributePointInfoToOwningMPIRanks(
Array<unsigned int> &recv_elem, Vector &recv_ref,
Array<unsigned int> &recv_code);
/// Return interpolated values back to the mpi-ranks #recv_proc that had
/// sent the element indices and corresponding reference-space coordinates.
/// Specify \p vdim and \p ordering (by nodes or by vdim) based on how the
/// \p int_vals are structured. The received values are filled in
/// \p field_out consistent with the original ordering of the points that
/// were used in \ref FindPoints.
virtual void DistributeInterpolatedValues(const Vector &int_vals,
const int vdim,
const int ordering,
Vector &field_out) const;
///@}
};
/** \brief OversetFindPointsGSLIB enables use of findpts for arbitrary number of
@@ -249,9 +296,9 @@ public:
#endif
/** Initializes the internal mesh in gslib, by sending the positions of the
Gauss-Lobatto nodes of the input Mesh object @a m.
Gauss-Lobatto nodes of the input Mesh object \p m.
Note: not tested with periodic meshes (L2).
Note: the input mesh @a m must have Nodes set.
Note: the input mesh \p m must have Nodes set.
@param[in] m Input mesh.
@param[in] meshid A unique # for each overlapping mesh. This id is
@@ -274,12 +321,12 @@ public:
const double bb_t = 0.1, const double newt_tol = 1.0e-12,
const int npt_max = 256);
/** Searches positions given in physical space by @a point_pos. All output
/** Searches positions given in physical space by \p point_pos. All output
Arrays and Vectors are expected to have the correct size.
@param[in] point_pos Positions to be found.
@param[in] point_id Index of the mesh that the point belongs
to (corresponding to @a meshid in Setup).
to (corresponding to \p meshid in Setup).
@param[in] point_pos_ordering Ordering of the points:
byNodes: (XXX...,YYY...,ZZZ) or
byVDim: (XYZ,XYZ,....XYZ) */
@@ -342,7 +389,7 @@ public:
enum GSOp {ADD, MUL, MIN, MAX};
/// Update the identifiers used for the gather-scatter operator.
/// Same @a ids get grouped together and id == 0 does not participate.
/// Same \p ids get grouped together and id == 0 does not participate.
/// See class description.
void UpdateIdentifiers(const Array<long long> &ids);
+27 -112
View File
@@ -14,6 +14,33 @@
namespace mfem
{
// PA Diffusion Integrator
DiffusionIntegrator::Kernels DiffusionIntegrator::kernels;
DiffusionIntegrator::Kernels::Kernels()
{
// 2D
DiffusionIntegrator::AddSpecialization<2,2,2>();
DiffusionIntegrator::AddSpecialization<2,3,3>();
DiffusionIntegrator::AddSpecialization<2,4,4>();
DiffusionIntegrator::AddSpecialization<2,5,5>();
DiffusionIntegrator::AddSpecialization<2,6,6>();
DiffusionIntegrator::AddSpecialization<2,7,7>();
DiffusionIntegrator::AddSpecialization<2,8,8>();
DiffusionIntegrator::AddSpecialization<2,9,9>();
// 3D
DiffusionIntegrator::AddSpecialization<3,2,2>();
DiffusionIntegrator::AddSpecialization<3,2,3>();
DiffusionIntegrator::AddSpecialization<3,3,4>();
DiffusionIntegrator::AddSpecialization<3,4,5>();
DiffusionIntegrator::AddSpecialization<3,4,6>();
DiffusionIntegrator::AddSpecialization<3,5,6>();
DiffusionIntegrator::AddSpecialization<3,5,8>();
DiffusionIntegrator::AddSpecialization<3,6,7>();
DiffusionIntegrator::AddSpecialization<3,7,8>();
DiffusionIntegrator::AddSpecialization<3,8,9>();
}
namespace internal
{
@@ -363,118 +390,6 @@ void OccaPADiffusionSetup3D(const int D1D,
}
#endif // MFEM_USE_OCCA
void PADiffusionAssembleDiagonal(const int dim,
const int D1D,
const int Q1D,
const int NE,
const bool symm,
const Array<real_t> &B,
const Array<real_t> &G,
const Vector &D,
Vector &Y)
{
if (dim == 2)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return SmemPADiffusionDiagonal2D<2,2,8>(NE,symm,B,G,D,Y);
case 0x33: return SmemPADiffusionDiagonal2D<3,3,8>(NE,symm,B,G,D,Y);
case 0x44: return SmemPADiffusionDiagonal2D<4,4,4>(NE,symm,B,G,D,Y);
case 0x55: return SmemPADiffusionDiagonal2D<5,5,4>(NE,symm,B,G,D,Y);
case 0x66: return SmemPADiffusionDiagonal2D<6,6,2>(NE,symm,B,G,D,Y);
case 0x77: return SmemPADiffusionDiagonal2D<7,7,2>(NE,symm,B,G,D,Y);
case 0x88: return SmemPADiffusionDiagonal2D<8,8,1>(NE,symm,B,G,D,Y);
case 0x99: return SmemPADiffusionDiagonal2D<9,9,1>(NE,symm,B,G,D,Y);
default: return PADiffusionDiagonal2D(NE,symm,B,G,D,Y,D1D,Q1D);
}
}
else if (dim == 3)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return SmemPADiffusionDiagonal3D<2,2>(NE,symm,B,G,D,Y);
case 0x23: return SmemPADiffusionDiagonal3D<2,3>(NE,symm,B,G,D,Y);
case 0x34: return SmemPADiffusionDiagonal3D<3,4>(NE,symm,B,G,D,Y);
case 0x45: return SmemPADiffusionDiagonal3D<4,5>(NE,symm,B,G,D,Y);
case 0x46: return SmemPADiffusionDiagonal3D<4,6>(NE,symm,B,G,D,Y);
case 0x56: return SmemPADiffusionDiagonal3D<5,6>(NE,symm,B,G,D,Y);
case 0x67: return SmemPADiffusionDiagonal3D<6,7>(NE,symm,B,G,D,Y);
case 0x78: return SmemPADiffusionDiagonal3D<7,8>(NE,symm,B,G,D,Y);
case 0x89: return SmemPADiffusionDiagonal3D<8,9>(NE,symm,B,G,D,Y);
case 0x9A: return SmemPADiffusionDiagonal3D<9,10>(NE,symm,B,G,D,Y);
default: return PADiffusionDiagonal3D(NE,symm,B,G,D,Y,D1D,Q1D);
}
}
MFEM_ABORT("Unknown kernel.");
}
void PADiffusionApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const bool symm,
const Array<real_t> &B,
const Array<real_t> &G,
const Array<real_t> &Bt,
const Array<real_t> &Gt,
const Vector &D,
const Vector &X,
Vector &Y)
{
#ifdef MFEM_USE_OCCA
if (DeviceCanUseOcca())
{
if (dim == 2)
{
OccaPADiffusionApply2D(D1D,Q1D,NE,B,G,Bt,Gt,D,X,Y);
return;
}
if (dim == 3)
{
OccaPADiffusionApply3D(D1D,Q1D,NE,B,G,Bt,Gt,D,X,Y);
return;
}
MFEM_ABORT("OCCA PADiffusionApply unknown kernel!");
}
#endif // MFEM_USE_OCCA
const int id = (D1D << 4) | Q1D;
if (dim == 2)
{
switch (id)
{
case 0x22: return SmemPADiffusionApply2D<2,2,16>(NE,symm,B,G,D,X,Y);
case 0x33: return SmemPADiffusionApply2D<3,3,16>(NE,symm,B,G,D,X,Y);
case 0x44: return SmemPADiffusionApply2D<4,4,8>(NE,symm,B,G,D,X,Y);
case 0x55: return SmemPADiffusionApply2D<5,5,8>(NE,symm,B,G,D,X,Y);
case 0x66: return SmemPADiffusionApply2D<6,6,4>(NE,symm,B,G,D,X,Y);
case 0x77: return SmemPADiffusionApply2D<7,7,4>(NE,symm,B,G,D,X,Y);
case 0x88: return SmemPADiffusionApply2D<8,8,2>(NE,symm,B,G,D,X,Y);
case 0x99: return SmemPADiffusionApply2D<9,9,2>(NE,symm,B,G,D,X,Y);
default: return PADiffusionApply2D(NE,symm,B,G,Bt,Gt,D,X,Y,D1D,Q1D);
}
}
if (dim == 3)
{
switch (id)
{
case 0x22: return SmemPADiffusionApply3D<2,2>(NE,symm,B,G,D,X,Y);
case 0x23: return SmemPADiffusionApply3D<2,3>(NE,symm,B,G,D,X,Y);
case 0x34: return SmemPADiffusionApply3D<3,4>(NE,symm,B,G,D,X,Y);
case 0x45: return SmemPADiffusionApply3D<4,5>(NE,symm,B,G,D,X,Y);
case 0x46: return SmemPADiffusionApply3D<4,6>(NE,symm,B,G,D,X,Y);
case 0x56: return SmemPADiffusionApply3D<5,6>(NE,symm,B,G,D,X,Y);
case 0x58: return SmemPADiffusionApply3D<5,8>(NE,symm,B,G,D,X,Y);
case 0x67: return SmemPADiffusionApply3D<6,7>(NE,symm,B,G,D,X,Y);
case 0x78: return SmemPADiffusionApply3D<7,8>(NE,symm,B,G,D,X,Y);
case 0x89: return SmemPADiffusionApply3D<8,9>(NE,symm,B,G,D,X,Y);
default: return PADiffusionApply3D(NE,symm,B,G,Bt,Gt,D,X,Y,D1D,Q1D);
}
}
MFEM_ABORT("Unknown kernel: 0x"<<std::hex << id << std::dec);
}
#ifdef MFEM_USE_OCCA
void OccaPADiffusionApply2D(const int D1D,
const int Q1D,
+65 -7
View File
@@ -12,6 +12,7 @@
#ifndef MFEM_BILININTEG_DIFFUSION_KERNELS_HPP
#define MFEM_BILININTEG_DIFFUSION_KERNELS_HPP
#include "../kernel_dispatch.hpp"
#include "../../config/config.hpp"
#include "../../general/array.hpp"
#include "../../general/forall.hpp"
@@ -36,7 +37,7 @@ void PADiffusionSetup(const int dim,
const Vector &C,
Vector &D);
// PA Diffusion Assemble 2D kernel
// PA Diffusion Assemble 2D f
template<int T_SDIM>
void PADiffusionSetup2D(const int Q1D,
const int coeffDim,
@@ -151,8 +152,23 @@ inline void PADiffusionDiagonal2D(const int NE,
});
}
namespace diffusion
{
constexpr int ipow(int x, int p) { return p == 0 ? 1 : x*ipow(x, p-1); }
constexpr int D11(int x) { return (11 - x)/2; }
constexpr int D10(int x) { return (10 - x)/2; }
constexpr int NBZApply(int D1D)
{
return ipow(2, D11(D1D) >= 0 ? D11(D1D) : 0);
}
constexpr int NBZDiagonal(int D1D)
{
return ipow(2, D10(D1D) >= 0 ? D10(D1D) : 0);
}
}
// Shared memory PA Diffusion Diagonal 2D kernel
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
template<int T_D1D = 0, int T_Q1D = 0>
inline void SmemPADiffusionDiagonal2D(const int NE,
const bool symmetric,
const Array<real_t> &b_,
@@ -162,9 +178,10 @@ inline void SmemPADiffusionDiagonal2D(const int NE,
const int d1d = 0,
const int q1d = 0)
{
static constexpr int T_NBZ = diffusion::NBZDiagonal(T_D1D);
static constexpr int NBZ = T_NBZ ? T_NBZ : 1;
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
const int max_q1d = T_Q1D ? T_Q1D : DeviceDofQuadLimits::Get().MAX_Q1D;
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
MFEM_VERIFY(D1D <= max_d1d, "");
@@ -178,7 +195,6 @@ inline void SmemPADiffusionDiagonal2D(const int NE,
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
MFEM_SHARED real_t BG[2][MQ1*MD1];
@@ -628,20 +644,23 @@ inline void PADiffusionApply2D(const int NE,
}
// Shared memory PA Diffusion Apply 2D kernel
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
template<int T_D1D = 0, int T_Q1D = 0>
inline void SmemPADiffusionApply2D(const int NE,
const bool symmetric,
const Array<real_t> &b_,
const Array<real_t> &g_,
const Array<real_t> &bt_,
const Array<real_t> &gt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
static constexpr int T_NBZ = diffusion::NBZApply(T_D1D);
static constexpr int NBZ = T_NBZ ? T_NBZ : 1;
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
const int max_q1d = T_Q1D ? T_Q1D : DeviceDofQuadLimits::Get().MAX_Q1D;
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
MFEM_VERIFY(D1D <= max_d1d, "");
@@ -656,7 +675,6 @@ inline void SmemPADiffusionApply2D(const int NE,
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
MFEM_SHARED real_t sBG[2][MQ1*MD1];
@@ -984,6 +1002,8 @@ inline void SmemPADiffusionApply3D(const int NE,
const bool symmetric,
const Array<real_t> &b_,
const Array<real_t> &g_,
const Array<real_t> &,
const Array<real_t> &,
const Vector &d_,
const Vector &x_,
Vector &y_,
@@ -1203,6 +1223,44 @@ inline void SmemPADiffusionApply3D(const int NE,
} // namespace internal
namespace
{
using ApplyKernelType = DiffusionIntegrator::ApplyKernelType;
using DiagonalKernelType = DiffusionIntegrator::DiagonalKernelType;
}
template<int DIM, int T_D1D, int T_Q1D>
ApplyKernelType DiffusionIntegrator::ApplyPAKernels::Kernel()
{
if (DIM == 2) { return internal::SmemPADiffusionApply2D<T_D1D,T_Q1D>; }
else if (DIM == 3) { return internal::SmemPADiffusionApply3D<T_D1D, T_Q1D>; }
else { MFEM_ABORT(""); }
}
inline
ApplyKernelType DiffusionIntegrator::ApplyPAKernels::Fallback(int DIM, int, int)
{
if (DIM == 2) { return internal::PADiffusionApply2D; }
else if (DIM == 3) { return internal::PADiffusionApply3D; }
else { MFEM_ABORT(""); }
}
template<int DIM, int D1D, int Q1D>
DiagonalKernelType DiffusionIntegrator::DiagonalPAKernels::Kernel()
{
if (DIM == 2) { return internal::SmemPADiffusionDiagonal2D<D1D,Q1D>; }
else if (DIM == 3) { return internal::SmemPADiffusionDiagonal3D<D1D, Q1D>; }
else { MFEM_ABORT(""); }
}
inline DiagonalKernelType
DiffusionIntegrator::DiagonalPAKernels::Fallback(int DIM, int, int)
{
if (DIM == 2) { return internal::PADiffusionDiagonal2D; }
else if (DIM == 3) { return internal::PADiffusionDiagonal3D; }
else { MFEM_ABORT(""); }
}
} // namespace mfem
#endif
+67 -41
View File
@@ -19,6 +19,73 @@
namespace mfem
{
void DiffusionIntegrator::AssembleDiagonalPA(Vector &diag)
{
if (DeviceCanUseCeed())
{
ceedOp->GetDiagonal(diag);
}
else
{
if (pa_data.Size() == 0) { AssemblePA(*fespace); }
const Array<real_t> &B = maps->B;
const Array<real_t> &G = maps->G;
const Vector &Dv = pa_data;
DiagonalPAKernels::Run(dim, dofs1D, quad1D, ne, symmetric, B, G, Dv,
diag, dofs1D, quad1D);
}
}
// PA Diffusion Apply kernel
void DiffusionIntegrator::AddMultPA(const Vector &x, Vector &y) const
{
if (DeviceCanUseCeed())
{
ceedOp->AddMult(x, y);
}
else
{
const Array<real_t> &B = maps->B;
const Array<real_t> &G = maps->G;
const Array<real_t> &Bt = maps->Bt;
const Array<real_t> &Gt = maps->Gt;
const Vector &Dv = pa_data;
#ifdef MFEM_USE_OCCA
if (DeviceCanUseOcca())
{
if (dim == 2)
{
OccaPADiffusionApply2D(dofs1D,quad1D,ne,B,G,Bt,Gt,Dv,x,y);
return;
}
if (dim == 3)
{
OccaPADiffusionApply3D(dofs1D,quad1D,ne,B,G,Bt,Gt,Dv,x,y);
return;
}
MFEM_ABORT("OCCA PADiffusionApply unknown kernel!");
}
#endif // MFEM_USE_OCCA
ApplyPAKernels::Run(dim, dofs1D, quad1D, ne, symmetric, B, G, Bt,
Gt, Dv, x, y, dofs1D, quad1D);
}
}
void DiffusionIntegrator::AddMultTransposePA(const Vector &x, Vector &y) const
{
if (symmetric)
{
AddMultPA(x, y);
}
else
{
MFEM_ABORT("DiffusionIntegrator::AddMultTransposePA only implemented in "
"the symmetric case.")
}
}
void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
@@ -98,47 +165,6 @@ void DiffusionIntegrator::AssemblePatchPA(const int patch,
SetupPatchPA(patch, mesh); // For full quadrature, unitWeights = false
}
void DiffusionIntegrator::AssembleDiagonalPA(Vector &diag)
{
if (DeviceCanUseCeed())
{
ceedOp->GetDiagonal(diag);
}
else
{
if (pa_data.Size()==0) { AssemblePA(*fespace); }
internal::PADiffusionAssembleDiagonal(dim, dofs1D, quad1D, ne, symmetric,
maps->B, maps->G, pa_data, diag);
}
}
void DiffusionIntegrator::AddMultPA(const Vector &x, Vector &y) const
{
if (DeviceCanUseCeed())
{
ceedOp->AddMult(x, y);
}
else
{
internal::PADiffusionApply(dim, dofs1D, quad1D, ne, symmetric,
maps->B, maps->G, maps->Bt, maps->Gt,
pa_data, x, y);
}
}
void DiffusionIntegrator::AddMultTransposePA(const Vector &x, Vector &y) const
{
if (symmetric)
{
AddMultPA(x, y);
}
else
{
MFEM_ABORT("DiffusionIntegrator::AddMultTransposePA only implemented in "
"the symmetric case.")
}
}
// This version uses full 1D quadrature rules, taking into account the
// minimum interaction between basis functions and integration points.
void DiffusionIntegrator::AddMultPatchPA(const int patch, const Vector &x,
+25 -217
View File
@@ -14,78 +14,34 @@
namespace mfem
{
MassIntegrator::Kernels MassIntegrator::kernels;
MassIntegrator::Kernels::Kernels()
{
// 2D
MassIntegrator::AddSpecialization<2,2,2>();
MassIntegrator::AddSpecialization<2,3,3>();
MassIntegrator::AddSpecialization<2,4,4>();
MassIntegrator::AddSpecialization<2,5,5>();
MassIntegrator::AddSpecialization<2,6,6>();
MassIntegrator::AddSpecialization<2,7,7>();
MassIntegrator::AddSpecialization<2,8,8>();
MassIntegrator::AddSpecialization<2,9,9>();
// 3D
MassIntegrator::AddSpecialization<3,2,2>();
MassIntegrator::AddSpecialization<3,2,3>();
MassIntegrator::AddSpecialization<3,3,4>();
MassIntegrator::AddSpecialization<3,4,5>();
MassIntegrator::AddSpecialization<3,4,6>();
MassIntegrator::AddSpecialization<3,5,6>();
MassIntegrator::AddSpecialization<3,5,8>();
MassIntegrator::AddSpecialization<3,6,7>();
MassIntegrator::AddSpecialization<3,7,8>();
MassIntegrator::AddSpecialization<3,8,9>();
}
namespace internal
{
// PA Mass Diagonal 1D kernel
static void PAMassAssembleDiagonal1D(const int NE,
const Array<real_t> &b,
const Vector &d,
Vector &y,
const int D1D,
const int Q1D)
{
auto B = Reshape(b.Read(), Q1D, D1D);
auto D = Reshape(d.Read(), Q1D, NE);
auto Y = Reshape(y.ReadWrite(), D1D, NE);
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
{
for (int dx = 0; dx < D1D; ++dx)
{
for (int qx = 0; qx < Q1D; ++qx)
{
Y(dx, e) += B(qx, dx) * B(qx, dx) * D(qx, e);
}
}
});
}
void PAMassAssembleDiagonal(const int dim, const int D1D,
const int Q1D, const int NE,
const Array<real_t> &B,
const Vector &D,
Vector &Y)
{
if (dim == 1)
{
return PAMassAssembleDiagonal1D(NE,B,D,Y,D1D,Q1D);
}
else if (dim == 2)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return SmemPAMassAssembleDiagonal2D<2,2,16>(NE,B,D,Y);
case 0x33: return SmemPAMassAssembleDiagonal2D<3,3,16>(NE,B,D,Y);
case 0x44: return SmemPAMassAssembleDiagonal2D<4,4,8>(NE,B,D,Y);
case 0x55: return SmemPAMassAssembleDiagonal2D<5,5,8>(NE,B,D,Y);
case 0x66: return SmemPAMassAssembleDiagonal2D<6,6,4>(NE,B,D,Y);
case 0x77: return SmemPAMassAssembleDiagonal2D<7,7,4>(NE,B,D,Y);
case 0x88: return SmemPAMassAssembleDiagonal2D<8,8,2>(NE,B,D,Y);
case 0x99: return SmemPAMassAssembleDiagonal2D<9,9,2>(NE,B,D,Y);
default: return PAMassAssembleDiagonal2D(NE,B,D,Y,D1D,Q1D);
}
}
else if (dim == 3)
{
switch ((D1D << 4 ) | Q1D)
{
case 0x23: return SmemPAMassAssembleDiagonal3D<2,3>(NE,B,D,Y);
case 0x24: return SmemPAMassAssembleDiagonal3D<2,4>(NE,B,D,Y);
case 0x26: return SmemPAMassAssembleDiagonal3D<2,6>(NE,B,D,Y);
case 0x34: return SmemPAMassAssembleDiagonal3D<3,4>(NE,B,D,Y);
case 0x35: return SmemPAMassAssembleDiagonal3D<3,5>(NE,B,D,Y);
case 0x45: return SmemPAMassAssembleDiagonal3D<4,5>(NE,B,D,Y);
case 0x48: return SmemPAMassAssembleDiagonal3D<4,8>(NE,B,D,Y);
case 0x56: return SmemPAMassAssembleDiagonal3D<5,6>(NE,B,D,Y);
case 0x67: return SmemPAMassAssembleDiagonal3D<6,7>(NE,B,D,Y);
case 0x78: return SmemPAMassAssembleDiagonal3D<7,8>(NE,B,D,Y);
case 0x89: return SmemPAMassAssembleDiagonal3D<8,9>(NE,B,D,Y);
default: return PAMassAssembleDiagonal3D(NE,B,D,Y,D1D,Q1D);
}
}
MFEM_ABORT("Unknown kernel.");
}
#ifdef MFEM_USE_OCCA
void OccaPAMassApply2D(const int D1D,
const int Q1D,
@@ -176,154 +132,6 @@ void OccaPAMassApply3D(const int D1D,
}
#endif // MFEM_USE_OCCA
MFEM_HOST_DEVICE inline
void PAMassApply1D_Element(const int e,
const int NE,
const real_t *b_,
const real_t *bt_,
const real_t *d_,
const real_t *x_,
real_t *y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = d1d;
const int Q1D = q1d;
auto B = ConstDeviceMatrix(b_, Q1D, D1D);
auto Bt = ConstDeviceMatrix(bt_, D1D, Q1D);
auto D = ConstDeviceMatrix(d_, Q1D, NE);
auto X = ConstDeviceMatrix(x_, D1D, NE);
auto Y = DeviceMatrix(y_, D1D, NE);
real_t XQ[DofQuadLimits::MAX_Q1D];
for (int qx = 0; qx < Q1D; ++qx)
{
XQ[qx] = 0.0;
}
for (int dx = 0; dx < D1D; ++dx)
{
const real_t s = X(dx,e);
for (int qx = 0; qx < Q1D; ++qx)
{
XQ[qx] += B(qx,dx)*s;
}
}
for (int qx = 0; qx < Q1D; ++qx)
{
const real_t q = XQ[qx]*D(qx,e);
for (int dx = 0; dx < D1D; ++dx)
{
Y(dx,e) += Bt(dx,qx) * q;
}
}
}
// PA Mass Apply 1D kernel
static void PAMassApply1D(const int NE,
const Array<real_t> &b_,
const Array<real_t> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
MFEM_VERIFY(d1d <= DeviceDofQuadLimits::Get().MAX_D1D, "");
MFEM_VERIFY(q1d <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
const auto B = b_.Read();
const auto Bt = bt_.Read();
const auto D = d_.Read();
const auto X = x_.Read();
auto Y = y_.ReadWrite();
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
{
internal::PAMassApply1D_Element(e, NE, B, Bt, D, X, Y, d1d, q1d);
});
}
void PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const Array<real_t> &B,
const Array<real_t> &Bt,
const Vector &D,
const Vector &X,
Vector &Y)
{
#ifdef MFEM_USE_OCCA
if (DeviceCanUseOcca())
{
if (dim == 2)
{
return OccaPAMassApply2D(D1D,Q1D,NE,B,Bt,D,X,Y);
}
if (dim == 3)
{
return OccaPAMassApply3D(D1D,Q1D,NE,B,Bt,D,X,Y);
}
MFEM_ABORT("OCCA PA Mass Apply unknown kernel!");
}
#endif // MFEM_USE_OCCA
const int id = (D1D << 4) | Q1D;
if (dim == 1)
{
return PAMassApply1D(NE,B,Bt,D,X,Y,D1D,Q1D);
}
else if (dim == 2)
{
switch (id)
{
case 0x22: return SmemPAMassApply2D<2,2,16>(NE,B,Bt,D,X,Y);
case 0x24: return SmemPAMassApply2D<2,4,16>(NE,B,Bt,D,X,Y);
case 0x33: return SmemPAMassApply2D<3,3,16>(NE,B,Bt,D,X,Y);
case 0x34: return SmemPAMassApply2D<3,4,16>(NE,B,Bt,D,X,Y);
case 0x35: return SmemPAMassApply2D<3,5,16>(NE,B,Bt,D,X,Y);
case 0x36: return SmemPAMassApply2D<3,6,16>(NE,B,Bt,D,X,Y);
case 0x44: return SmemPAMassApply2D<4,4,8>(NE,B,Bt,D,X,Y);
case 0x46: return SmemPAMassApply2D<4,6,8>(NE,B,Bt,D,X,Y);
case 0x48: return SmemPAMassApply2D<4,8,4>(NE,B,Bt,D,X,Y);
case 0x55: return SmemPAMassApply2D<5,5,8>(NE,B,Bt,D,X,Y);
case 0x57: return SmemPAMassApply2D<5,7,8>(NE,B,Bt,D,X,Y);
case 0x58: return SmemPAMassApply2D<5,8,2>(NE,B,Bt,D,X,Y);
case 0x66: return SmemPAMassApply2D<6,6,4>(NE,B,Bt,D,X,Y);
case 0x77: return SmemPAMassApply2D<7,7,4>(NE,B,Bt,D,X,Y);
case 0x88: return SmemPAMassApply2D<8,8,2>(NE,B,Bt,D,X,Y);
case 0x99: return SmemPAMassApply2D<9,9,2>(NE,B,Bt,D,X,Y);
default: return PAMassApply2D(NE,B,Bt,D,X,Y,D1D,Q1D);
}
}
else if (dim == 3)
{
switch (id)
{
case 0x22: return SmemPAMassApply3D<2,2>(NE,B,Bt,D,X,Y);
case 0x23: return SmemPAMassApply3D<2,3>(NE,B,Bt,D,X,Y);
case 0x24: return SmemPAMassApply3D<2,4>(NE,B,Bt,D,X,Y);
case 0x26: return SmemPAMassApply3D<2,6>(NE,B,Bt,D,X,Y);
case 0x34: return SmemPAMassApply3D<3,4>(NE,B,Bt,D,X,Y);
case 0x35: return SmemPAMassApply3D<3,5>(NE,B,Bt,D,X,Y);
case 0x36: return SmemPAMassApply3D<3,6>(NE,B,Bt,D,X,Y);
case 0x37: return SmemPAMassApply3D<3,7>(NE,B,Bt,D,X,Y);
case 0x45: return SmemPAMassApply3D<4,5>(NE,B,Bt,D,X,Y);
case 0x46: return SmemPAMassApply3D<4,6>(NE,B,Bt,D,X,Y);
case 0x48: return SmemPAMassApply3D<4,8>(NE,B,Bt,D,X,Y);
case 0x56: return SmemPAMassApply3D<5,6>(NE,B,Bt,D,X,Y);
case 0x58: return SmemPAMassApply3D<5,8>(NE,B,Bt,D,X,Y);
case 0x67: return SmemPAMassApply3D<6,7>(NE,B,Bt,D,X,Y);
case 0x78: return SmemPAMassApply3D<7,8>(NE,B,Bt,D,X,Y);
case 0x89: return SmemPAMassApply3D<8,9>(NE,B,Bt,D,X,Y);
case 0x9A: return SmemPAMassApply3D<9,10>(NE,B,Bt,D,X,Y);
default: return PAMassApply3D(NE,B,Bt,D,X,Y,D1D,Q1D);
}
}
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
MFEM_ABORT("Unknown kernel.");
}
} // namespace internal
} // namespace mfem
+149 -22
View File
@@ -25,11 +25,95 @@ namespace mfem
namespace internal
{
void PAMassAssembleDiagonal(const int dim, const int D1D,
const int Q1D, const int NE,
const Array<real_t> &B,
const Vector &D,
Vector &Y);
// PA Mass Diagonal 1D kernel
static void PAMassAssembleDiagonal1D(const int NE,
const Array<real_t> &b,
const Vector &d,
Vector &y,
const int D1D,
const int Q1D)
{
auto B = Reshape(b.Read(), Q1D, D1D);
auto D = Reshape(d.Read(), Q1D, NE);
auto Y = Reshape(y.ReadWrite(), D1D, NE);
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
{
for (int dx = 0; dx < D1D; ++dx)
{
for (int qx = 0; qx < Q1D; ++qx)
{
Y(dx, e) += B(qx, dx) * B(qx, dx) * D(qx, e);
}
}
});
}
MFEM_HOST_DEVICE inline
void PAMassApply1D_Element(const int e,
const int NE,
const real_t *b_,
const real_t *bt_,
const real_t *d_,
const real_t *x_,
real_t *y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = d1d;
const int Q1D = q1d;
auto B = ConstDeviceMatrix(b_, Q1D, D1D);
auto Bt = ConstDeviceMatrix(bt_, D1D, Q1D);
auto D = ConstDeviceMatrix(d_, Q1D, NE);
auto X = ConstDeviceMatrix(x_, D1D, NE);
auto Y = DeviceMatrix(y_, D1D, NE);
real_t XQ[DofQuadLimits::MAX_Q1D];
for (int qx = 0; qx < Q1D; ++qx)
{
XQ[qx] = 0.0;
}
for (int dx = 0; dx < D1D; ++dx)
{
const real_t s = X(dx,e);
for (int qx = 0; qx < Q1D; ++qx)
{
XQ[qx] += B(qx,dx)*s;
}
}
for (int qx = 0; qx < Q1D; ++qx)
{
const double q = XQ[qx]*D(qx,e);
for (int dx = 0; dx < D1D; ++dx)
{
Y(dx,e) += Bt(dx,qx) * q;
}
}
}
// PA Mass Apply 1D kernel
static void PAMassApply1D(const int NE,
const Array<real_t> &b_,
const Array<real_t> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
MFEM_VERIFY(d1d <= DeviceDofQuadLimits::Get().MAX_D1D, "");
MFEM_VERIFY(q1d <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
const auto B = b_.Read();
const auto Bt = bt_.Read();
const auto D = d_.Read();
const auto X = x_.Read();
auto Y = y_.ReadWrite();
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
{
internal::PAMassApply1D_Element(e, NE, B, Bt, D, X, Y, d1d, q1d);
});
}
// PA Mass Diagonal 2D kernel
template<int T_D1D = 0, int T_Q1D = 0>
@@ -78,8 +162,18 @@ inline void PAMassAssembleDiagonal2D(const int NE,
});
}
namespace mass
{
constexpr int ipow(int x, int p) { return p == 0 ? 1 : x*ipow(x, p-1); }
constexpr int D(int D1D) { return (11 - D1D) / 2; }
constexpr int NBZ(int D1D)
{
return ipow(2, D(D1D) >= 0 ? D(D1D) : 0);
}
}
// Shared memory PA Mass Diagonal 2D kernel
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
template<int T_D1D = 0, int T_Q1D = 0>
inline void SmemPAMassAssembleDiagonal2D(const int NE,
const Array<real_t> &b_,
const Vector &d_,
@@ -87,9 +181,10 @@ inline void SmemPAMassAssembleDiagonal2D(const int NE,
const int d1d = 0,
const int q1d = 0)
{
static constexpr int T_NBZ = mass::NBZ(T_D1D);
static constexpr int NBZ = T_NBZ ? T_NBZ : 1;
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
const int max_q1d = T_Q1D ? T_Q1D : DeviceDofQuadLimits::Get().MAX_Q1D;
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
MFEM_VERIFY(D1D <= max_d1d, "");
@@ -102,7 +197,6 @@ inline void SmemPAMassAssembleDiagonal2D(const int NE,
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
MFEM_SHARED real_t B[MQ1][MD1];
@@ -302,16 +396,6 @@ inline void SmemPAMassAssembleDiagonal3D(const int NE,
});
}
void PAMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const Array<real_t> &B,
const Array<real_t> &Bt,
const Vector &D,
const Vector &X,
Vector &Y);
#ifdef MFEM_USE_OCCA
// OCCA PA Mass Apply 2D kernel
void OccaPAMassApply2D(const int D1D,
@@ -964,7 +1048,7 @@ inline void PAMassApply2D(const int NE,
}
// Shared memory PA Mass Apply 2D kernel
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
template<int T_D1D = 0, int T_Q1D = 0>
inline void SmemPAMassApply2D(const int NE,
const Array<real_t> &b_,
const Array<real_t> &bt_,
@@ -975,9 +1059,10 @@ inline void SmemPAMassApply2D(const int NE,
const int q1d = 0)
{
MFEM_CONTRACT_VAR(bt_);
static constexpr int T_NBZ = mass::NBZ(T_D1D);
static constexpr int NBZ = T_NBZ ? T_NBZ : 1;
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
const int max_q1d = T_Q1D ? T_Q1D : DeviceDofQuadLimits::Get().MAX_Q1D;
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
MFEM_VERIFY(D1D <= max_d1d, "");
@@ -988,8 +1073,8 @@ inline void SmemPAMassApply2D(const int NE,
auto Y = y_.ReadWrite();
mfem::forall_2D_batch(NE, Q1D, Q1D, NBZ, [=] MFEM_HOST_DEVICE (int e)
{
internal::SmemPAMassApply2D_Element<T_D1D,T_Q1D,T_NBZ>(e, NE, b, D, x, Y, d1d,
q1d);
internal::SmemPAMassApply2D_Element<T_D1D,T_Q1D,T_NBZ>(
e, NE, b, D, x, Y, d1d, q1d);
});
}
@@ -1049,6 +1134,48 @@ inline void SmemPAMassApply3D(const int NE,
} // namespace internal
namespace
{
using ApplyKernelType = MassIntegrator::ApplyKernelType;
using DiagonalKernelType = MassIntegrator::DiagonalKernelType;
}
template<int DIM, int T_D1D, int T_Q1D>
ApplyKernelType MassIntegrator::ApplyPAKernels::Kernel()
{
if (DIM == 1) { return internal::PAMassApply1D; }
else if (DIM == 2) { return internal::SmemPAMassApply2D<T_D1D,T_Q1D>; }
else if (DIM == 3) { return internal::SmemPAMassApply3D<T_D1D, T_Q1D>; }
else { MFEM_ABORT(""); }
}
inline ApplyKernelType MassIntegrator::ApplyPAKernels::Fallback(
int DIM, int, int)
{
if (DIM == 1) { return internal::PAMassApply1D; }
else if (DIM == 2) { return internal::PAMassApply2D; }
else if (DIM == 3) { return internal::PAMassApply3D; }
else { MFEM_ABORT(""); }
}
template<int DIM, int T_D1D, int T_Q1D>
DiagonalKernelType MassIntegrator::DiagonalPAKernels::Kernel()
{
if (DIM == 1) { return internal::PAMassAssembleDiagonal1D; }
else if (DIM == 2) { return internal::SmemPAMassAssembleDiagonal2D<T_D1D,T_Q1D>; }
else if (DIM == 3) { return internal::SmemPAMassAssembleDiagonal3D<T_D1D, T_Q1D>; }
else { MFEM_ABORT(""); }
}
inline DiagonalKernelType MassIntegrator::DiagonalPAKernels::Fallback(
int DIM, int, int)
{
if (DIM == 1) { return internal::PAMassAssembleDiagonal1D; }
else if (DIM == 2) { return internal::PAMassAssembleDiagonal2D; }
else if (DIM == 3) { return internal::PAMassAssembleDiagonal3D; }
else { MFEM_ABORT(""); }
}
} // namespace mfem
#endif
+24 -4
View File
@@ -19,6 +19,8 @@
namespace mfem
{
// PA Mass Integrator
void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
@@ -195,8 +197,8 @@ void MassIntegrator::AssembleDiagonalPA(Vector &diag)
}
else
{
internal::PAMassAssembleDiagonal(dim, dofs1D, quad1D, ne, maps->B, pa_data,
diag);
DiagonalPAKernels::Run(dim, dofs1D, quad1D, ne, maps->B, pa_data,
diag, dofs1D, quad1D);
}
}
@@ -208,8 +210,26 @@ void MassIntegrator::AddMultPA(const Vector &x, Vector &y) const
}
else
{
internal::PAMassApply(dim, dofs1D, quad1D, ne, maps->B, maps->Bt, pa_data, x,
y);
const int D1D = dofs1D;
const int Q1D = quad1D;
const Array<real_t> &B = maps->B;
const Array<real_t> &Bt = maps->Bt;
const Vector &D = pa_data;
#ifdef MFEM_USE_OCCA
if (DeviceCanUseOcca())
{
if (dim == 2)
{
return OccaPAMassApply2D(D1D,Q1D,ne,B,Bt,D,x,y);
}
if (dim == 3)
{
return OccaPAMassApply3D(D1D,Q1D,ne,B,Bt,D,x,y);
}
MFEM_ABORT("OCCA PA Mass Apply unknown kernel!");
}
#endif // MFEM_USE_OCCA
ApplyPAKernels::Run(dim, D1D, Q1D, ne, B, Bt, D, x, y, D1D, Q1D);
}
}
+44 -44
View File
@@ -220,8 +220,8 @@ void MomentFittingIntRules::ComputeSurfaceWeights1D(ElementTransformation& Tr)
{
IntegrationPoint ip2;
ip2.x = .5;
while (LvlSet->Eval(Tr, ip2) > 1e-12
|| LvlSet->Eval(Tr, ip2) < -1e-12)
while (LvlSet->Eval(Tr, ip2) > tol_1
|| LvlSet->Eval(Tr, ip2) < -tol_1)
{
if (LvlSet->Eval(Tr, ip0) * LvlSet->Eval(Tr, ip2) < 0.)
{
@@ -237,12 +237,12 @@ void MomentFittingIntRules::ComputeSurfaceWeights1D(ElementTransformation& Tr)
intp.x = ip2.x;
intp.weight = 1. / Tr.Weight();
}
else if (LvlSet->Eval(Tr, ip0) > 0. && LvlSet->Eval(Tr, ip1) <= 1e-12)
else if (LvlSet->Eval(Tr, ip0) > 0. && LvlSet->Eval(Tr, ip1) <= tol_1)
{
intp.x = 1.;
intp.weight = 1. / Tr.Weight();
}
else if (LvlSet->Eval(Tr, ip1) > 0. && LvlSet->Eval(Tr, ip0) <= 1e-12)
else if (LvlSet->Eval(Tr, ip1) > 0. && LvlSet->Eval(Tr, ip0) <= tol_1)
{
intp.x = 0.;
intp.weight = 1. / Tr.Weight();
@@ -290,8 +290,8 @@ void MomentFittingIntRules::ComputeVolumeWeights1D(ElementTransformation& Tr,
}
}
}
else if (LvlSet->Eval(Tr, ip0) <= -1e-12
|| LvlSet->Eval(Tr, ip1) <= -1e-12)
else if (LvlSet->Eval(Tr, ip0) <= -tol_1
|| LvlSet->Eval(Tr, ip1) <= -tol_1)
{
for (int ip = 0; ip < ir.GetNPoints(); ip++)
{
@@ -356,24 +356,24 @@ void MomentFittingIntRules::ComputeSurfaceWeights2D(ElementTransformation& Tr)
IntegrationPoint ipB;
Trafo.TransformBack(pointB, ipB);
if (LvlSet->Eval(Trafo, ipA) < -1e-12
|| LvlSet->Eval(Trafo, ipB) < -1e-12)
if (LvlSet->Eval(Trafo, ipA) < -tol_1
|| LvlSet->Eval(Trafo, ipB) < -tol_1)
{
interior = false;
}
if (LvlSet->Eval(Trafo, ipA) > -1e-12
&& LvlSet->Eval(Trafo, ipB) > -1e-12)
if (LvlSet->Eval(Trafo, ipA) > -tol_1
&& LvlSet->Eval(Trafo, ipB) > -tol_1)
{
layout = Layout::inside;
}
else if (LvlSet->Eval(Trafo, ipA) > 1e-15
else if (LvlSet->Eval(Trafo, ipA) > tol_2
&& LvlSet->Eval(Trafo, ipB) <= 0.)
{
layout = Layout::intersected;
}
else if (LvlSet->Eval(Trafo, ipA) <= 0.
&& LvlSet->Eval(Trafo, ipB) > 1e-15)
&& LvlSet->Eval(Trafo, ipB) > tol_2)
{
layout = Layout::intersected;
Vector temp(pointA.Size());
@@ -399,10 +399,10 @@ void MomentFittingIntRules::ComputeSurfaceWeights2D(ElementTransformation& Tr)
IntegrationPoint ip;
Trafo.TransformBack(mid, ip);
while (LvlSet->Eval(Trafo, ip) > 1e-12
|| LvlSet->Eval(Trafo, ip) < -1e-12)
while (LvlSet->Eval(Trafo, ip) > tol_1
|| LvlSet->Eval(Trafo, ip) < -tol_1)
{
if (LvlSet->Eval(Trafo, ip) > 1e-12)
if (LvlSet->Eval(Trafo, ip) > tol_1)
{
pointC = mid;
}
@@ -539,7 +539,7 @@ void MomentFittingIntRules::ComputeSurfaceWeights2D(ElementTransformation& Tr)
temp2 = 0.;
for (int i = 0; i < nBasis; i++)
{
if (SVD.Singularvalue(i) > 1e-12)
if (SVD.Singularvalue(i) > tol_1)
{
temp2(i) = temp(i) / SVD.Singularvalue(i);
}
@@ -606,24 +606,24 @@ void MomentFittingIntRules::ComputeVolumeWeights2D(ElementTransformation& Tr,
IntegrationPoint ipB;
Trafo.TransformBack(pointB, ipB);
if (LvlSet->Eval(Trafo, ipA) < -1e-12
|| LvlSet->Eval(Trafo, ipB) < -1e-12)
if (LvlSet->Eval(Trafo, ipA) < -tol_1
|| LvlSet->Eval(Trafo, ipB) < -tol_1)
{
interior = false;
}
if (LvlSet->Eval(Trafo, ipA) > -1e-12
&& LvlSet->Eval(Trafo, ipB) > -1e-12)
if (LvlSet->Eval(Trafo, ipA) > -tol_1
&& LvlSet->Eval(Trafo, ipB) > -tol_1)
{
layout = Layout::inside;
}
else if (LvlSet->Eval(Trafo, ipA) > 1e-15
else if (LvlSet->Eval(Trafo, ipA) > tol_2
&& LvlSet->Eval(Trafo, ipB) <= 0.)
{
layout = Layout::intersected;
}
else if (LvlSet->Eval(Trafo, ipA) <= 0.
&& LvlSet->Eval(Trafo, ipB) > 1e-15)
&& LvlSet->Eval(Trafo, ipB) > tol_2)
{
layout = Layout::intersected;
Vector temp(pointA.Size());
@@ -648,10 +648,10 @@ void MomentFittingIntRules::ComputeVolumeWeights2D(ElementTransformation& Tr,
IntegrationPoint ip;
Trafo.TransformBack(mid, ip);
while (LvlSet->Eval(Trafo, ip) > 1e-12
|| LvlSet->Eval(Trafo, ip) < -1e-12)
while (LvlSet->Eval(Trafo, ip) > tol_1
|| LvlSet->Eval(Trafo, ip) < -tol_1)
{
if (LvlSet->Eval(Trafo, ip) > 1e-12)
if (LvlSet->Eval(Trafo, ip) > tol_1)
{
pointC = mid;
}
@@ -786,7 +786,7 @@ void MomentFittingIntRules::ComputeVolumeWeights2D(ElementTransformation& Tr,
VolumeSVD->LeftSingularvectors().MultTranspose(RHS, temp);
for (int i = 0; i < nBasisVolume; i++)
{
if (VolumeSVD->Singularvalue(i) > 1e-12)
if (VolumeSVD->Singularvalue(i) > tol_1)
{
temp2(i) = temp(i) / VolumeSVD->Singularvalue(i);
}
@@ -865,18 +865,18 @@ void MomentFittingIntRules::ComputeSurfaceWeights3D(ElementTransformation& Tr)
IntegrationPoint ipD;
Trafo.TransformBack(pointD, ipD);
if (LvlSet->Eval(Trafo, ipA) < -1e-12
|| LvlSet->Eval(Trafo, ipB) < -1e-12
|| LvlSet->Eval(Trafo, ipC) < -1e-12
|| LvlSet->Eval(Trafo, ipD) < -1e-12)
if (LvlSet->Eval(Trafo, ipA) < -tol_1
|| LvlSet->Eval(Trafo, ipB) < -tol_1
|| LvlSet->Eval(Trafo, ipC) < -tol_1
|| LvlSet->Eval(Trafo, ipD) < -tol_1)
{
interior = false;
}
if (LvlSet->Eval(Trafo, ipA) > -1e-12
|| LvlSet->Eval(Trafo, ipB) > -1e-12
|| LvlSet->Eval(Trafo, ipC) > -1e-12
|| LvlSet->Eval(Trafo, ipD) > -1e-12)
if (LvlSet->Eval(Trafo, ipA) > -tol_1
|| LvlSet->Eval(Trafo, ipB) > -tol_1
|| LvlSet->Eval(Trafo, ipC) > -tol_1
|| LvlSet->Eval(Trafo, ipD) > -tol_1)
{
element_int = true;
}
@@ -978,7 +978,7 @@ void MomentFittingIntRules::ComputeSurfaceWeights3D(ElementTransformation& Tr)
temp2 = 0.;
for (int i = 0; i < nBasis; i++)
{
if (SVD.Singularvalue(i) > 1e-12)
if (SVD.Singularvalue(i) > tol_1)
{
temp2(i) = temp(i) / SVD.Singularvalue(i);
}
@@ -1047,18 +1047,18 @@ void MomentFittingIntRules::ComputeVolumeWeights3D(ElementTransformation& Tr,
IntegrationPoint ipD;
Trafo.TransformBack(pointD, ipD);
if (LvlSet->Eval(Trafo, ipA) < -1e-12
|| LvlSet->Eval(Trafo, ipB) < -1e-12
|| LvlSet->Eval(Trafo, ipC) < -1e-12
|| LvlSet->Eval(Trafo, ipD) < -1e-12)
if (LvlSet->Eval(Trafo, ipA) < -tol_1
|| LvlSet->Eval(Trafo, ipB) < -tol_1
|| LvlSet->Eval(Trafo, ipC) < -tol_1
|| LvlSet->Eval(Trafo, ipD) < -tol_1)
{
interior = false;
}
if (LvlSet->Eval(Trafo, ipA) > -1e-12
|| LvlSet->Eval(Trafo, ipB) > -1e-12
|| LvlSet->Eval(Trafo, ipC) > -1e-12
|| LvlSet->Eval(Trafo, ipD) > -1e-12)
if (LvlSet->Eval(Trafo, ipA) > -tol_1
|| LvlSet->Eval(Trafo, ipB) > -tol_1
|| LvlSet->Eval(Trafo, ipC) > -tol_1
|| LvlSet->Eval(Trafo, ipD) > -tol_1)
{
element_int = true;
}
@@ -1159,7 +1159,7 @@ void MomentFittingIntRules::ComputeVolumeWeights3D(ElementTransformation& Tr,
VolumeSVD->LeftSingularvectors().MultTranspose(RHS, temp);
temp2 = 0.;
for (int i = 0; i < nBasisVolume; i++)
if (VolumeSVD->Singularvalue(i) > 1e-12)
if (VolumeSVD->Singularvalue(i) > tol_1)
{
temp2(i) = temp(i) / VolumeSVD->Singularvalue(i);
}
+11
View File
@@ -36,6 +36,17 @@ protected:
/// Space order for the LS projection.
int lsOrder;
/// @name Tolerances used for point comparisons
///@{
#ifdef MFEM_USE_DOUBLE
static constexpr real_t tol_1 = 1e-12;
static constexpr real_t tol_2 = 1e-15;
#elif defined(MFEM_USE_SINGLE)
static constexpr real_t tol_1 = 1e-5;
static constexpr real_t tol_2 = 1e-7;
#endif
///@}
/** @brief Constructor to set up the generated cut IntegrationRules.
@param [in] order Order of the constructed IntegrationRule.
+183
View File
@@ -0,0 +1,183 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_KERNEL_DISPATCH_HPP
#define MFEM_KERNEL_DISPATCH_HPP
#include "../config/config.hpp"
#include "kernel_reporter.hpp"
#include <unordered_map>
#include <tuple>
#include <cstddef>
namespace mfem
{
// The MFEM_REGISTER_KERNELS macro registers kernels for runtime dispatch using
// a dispatch map.
//
// This creates a dispatch table (a static member variable) named @a KernelName
// containing function points of type @a KernelType. These are followed by one
// or two sets of parenthesized argument types.
//
// The first set of argument types contains the types that are used to dispatch
// to either specialized or fallback kernels. The second set of argument types
// can be used to further specialize the kernel without participating in
// dispatch (a canonical example is NBZ, determining the size of the thread
// blocks; this is required to specialize kernels for optimal performance, but
// is not relevant for dispatch).
//
// After calling this macro, the user must implement the Kernel and Fallback
// static member functions, which return pointers to the appropriate kernel
// functions depending on the parameters.
//
// Specialized functions can be registered using the static AddSpecialization
// member function.
#define MFEM_EXPAND(X) X // Workaround needed for MSVC compiler
#define MFEM_REGISTER_KERNELS(KernelName, KernelType, ...) \
MFEM_EXPAND(MFEM_EXPAND(MFEM_REGISTER_KERNELS_N(__VA_ARGS__,2,1,)) \
(KernelName,KernelType,__VA_ARGS__))
#define MFEM_REGISTER_KERNELS_N(_1, _2, N, ...) MFEM_REGISTER_KERNELS_##N
// Expands a variable length macro parameter so that multiple variable length
// parameters can be passed to the same macro.
#define MFEM_PARAM_LIST(...) __VA_ARGS__
// Version of MFEM_REGISTER_KERNELS without any "optional" (non-dispatch)
// parameters.
#define MFEM_REGISTER_KERNELS_1(KernelName, KernelType, Params) \
MFEM_REGISTER_KERNELS_(KernelName, KernelType, Params, (), Params)
// Version of MFEM_REGISTER_KERNELS without any optional (non-dispatch)
// parameters (e.g. NBZ).
#define MFEM_REGISTER_KERNELS_2(KernelName, KernelType, Params, OptParams) \
MFEM_REGISTER_KERNELS_(KernelName, KernelType, Params, OptParams, \
(MFEM_PARAM_LIST Params, MFEM_PARAM_LIST OptParams))
// P1 are the parameters, P2 are the optional (non-dispatch parameters), and P3
// is the concatenation of P1 and P2. We need to pass it as a separate argument
// to avoid a trailing comma in the case that P2 is empty.
#define MFEM_REGISTER_KERNELS_(KernelName, KernelType, P1, P2, P3) \
class KernelName : public \
KernelDispatchTable<KernelName, KernelType, \
internal::KernelTypeList<MFEM_PARAM_LIST P1>, \
internal::KernelTypeList<MFEM_PARAM_LIST P2>> \
{ \
public: \
const char *kernel_name = MFEM_KERNEL_NAME(KernelName); \
using KernelSignature = KernelType; \
template <MFEM_PARAM_LIST P3> \
static KernelSignature Kernel(); \
static KernelSignature Fallback(MFEM_PARAM_LIST P1); \
static KernelName &Get() \
{ static KernelName table; return table;} \
}
/// @brief Hashes variadic packs for which each type contained in the variadic
/// pack has a specialization of `std::hash` available.
///
/// For example, packs containing int, bool, enum values, etc.
template<typename ...KernelParameters>
struct KernelDispatchKeyHash
{
private:
template<int N>
size_t operator()(std::tuple<KernelParameters...> value) const { return 0; }
// The hashing formula here is taken directly from the Boost library, with
// the magic number 0x9e3779b9 chosen to minimize hashing collisions.
template<std::size_t N, typename THead, typename... TTail>
size_t operator()(std::tuple<KernelParameters...> value) const
{
constexpr int Index = N - sizeof...(TTail) - 1;
auto lhs_hash = std::hash<THead>()(std::get<Index>(value));
auto rhs_hash = operator()<N, TTail...>(value);
return lhs_hash^(rhs_hash + 0x9e3779b9 + (lhs_hash<<6) + (lhs_hash>>2));
}
public:
/// Returns the hash of the given @a value.
size_t operator()(std::tuple<KernelParameters...> value) const
{
return operator()<sizeof...(KernelParameters),KernelParameters...>(value);
}
};
namespace internal { template<typename... Types> struct KernelTypeList { }; }
template<typename... T> class KernelDispatchTable { };
template <typename Kernels,
typename Signature,
typename... Params,
typename... OptParams>
class KernelDispatchTable<Kernels,
Signature,
internal::KernelTypeList<Params...>,
internal::KernelTypeList<OptParams...>>
{
std::unordered_map<std::tuple<Params...>,
Signature,
KernelDispatchKeyHash<Params...>> table;
public:
/// @brief Run the kernel with the given dispatch parameters and arguments.
///
/// If a compile-time specialized version of the kernel with the given
/// parameters has been registered, it will be called. Otherwise, the
/// fallback kernel will be called.
template<typename... Args>
static void Run(Params... params, Args&&... args)
{
const auto &table = Kernels::Get().table;
const std::tuple<Params...> key = std::make_tuple(params...);
const auto it = table.find(key);
if (it != table.end())
{
it->second(std::forward<Args>(args)...);
}
else
{
ReportFallback(Kernels::Get().kernel_name, params...);
Kernels::Fallback(params...)(std::forward<Args>(args)...);
}
}
/// Register a specialized kernel for dispatch.
template <Params... PARAMS>
struct Specialization
{
// Version without optional parameters
static void Add()
{
std::tuple<Params...> param_tuple(PARAMS...);
Kernels::Get().table[param_tuple] =
Kernels:: template Kernel<PARAMS...>();
};
// Version with optional parameters
template <OptParams... OPT_PARAMS>
struct Opt
{
static void Add()
{
std::tuple<Params...> param_tuple(PARAMS...);
Kernels::Get().table[param_tuple] =
Kernels:: template Kernel<PARAMS..., OPT_PARAMS...>();
}
};
};
};
}
#endif
+82
View File
@@ -0,0 +1,82 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_KERNEL_REPORTER_HPP
#define MFEM_KERNEL_REPORTER_HPP
#include "../config/config.hpp"
#ifdef MFEM_REPORT_KERNELS
#include "../general/globals.hpp"
#include <set>
#include <sstream>
#include <string>
#define MFEM_STR_(X) #X
#define MFEM_STR(X) MFEM_STR_(X)
#define MFEM_KERNEL_NAME(KernelName) \
__FILE__ ":" MFEM_STR(__LINE__) " : " #KernelName
namespace mfem
{
namespace
{
template <typename Last>
static void Stringify_(std::ostream &o, Last &&arg)
{
o << arg;
}
template <typename T1, typename T2, typename... Rest>
static void Stringify_(std::ostream &o, T1 &&a1, T2 &&a2, Rest&&... rest)
{
o << int(a1) << ",";
Stringify_(o, a2, rest...);
}
template <typename... Args>
static std::string Stringify(Args&&... args)
{
std::stringstream o;
Stringify_(o, args...);
return o.str();
}
} // namespace
template <typename... Params>
void ReportFallback(const std::string &kernel_name, Params&&... params)
{
static std::set<std::string> reported_fallbacks;
const std::string requested_kernel =
kernel_name + "<" + Stringify(params...) + ">";
if (reported_fallbacks.find(requested_kernel) == reported_fallbacks.end())
{
reported_fallbacks.insert(requested_kernel);
mfem::err << "Fallback kernel. Requested "
<< requested_kernel << std::endl;
}
}
} // namespace mfem
#else // #ifdef MFEM_REPORT_KERNELS
// No-op
#define MFEM_KERNEL_NAME(KernelName) ""
template <typename... T> void ReportFallback(T&&...) { }
#endif
#endif
+64 -83
View File
@@ -27,12 +27,16 @@ namespace quadrature_interpolator
{
static void Det1D(const int NE,
const real_t *b,
const real_t *g,
const real_t *x,
real_t *y,
const int d1d,
const int q1d)
const int q1d,
Vector *d_buff = nullptr)
{
MFEM_CONTRACT_VAR(b);
MFEM_CONTRACT_VAR(d_buff);
const auto G = Reshape(g, q1d, d1d);
const auto X = Reshape(x, d1d, NE);
@@ -59,8 +63,10 @@ static void Det2D(const int NE,
const real_t *x,
real_t *y,
const int d1d = 0,
const int q1d = 0)
const int q1d = 0,
Vector *d_buff = nullptr)
{
MFEM_CONTRACT_VAR(d_buff);
static constexpr int SDIM = 2;
static constexpr int NBZ = 1;
@@ -109,8 +115,11 @@ static void Det2DSurface(const int NE,
const real_t *x,
real_t *y,
const int d1d = 0,
const int q1d = 0)
const int q1d = 0,
Vector *d_buff = nullptr)
{
MFEM_CONTRACT_VAR(d_buff);
static constexpr int SDIM = 3;
static constexpr int NBZ = 1;
@@ -272,91 +281,63 @@ static void Det3D(const int NE,
});
}
// Tensor-product evaluation of quadrature point determinants: dispatch
// function.
void TensorDeterminants(const int NE,
const int vdim,
const DofToQuad &maps,
const Vector &e_vec,
Vector &q_det,
Vector &d_buff)
void InitDetKernels()
{
if (NE == 0) { return; }
const int dim = maps.FE->GetDim();
const int D1D = maps.ndof;
const int Q1D = maps.nqpt;
const real_t *B = maps.B.Read();
const real_t *G = maps.G.Read();
const real_t *X = e_vec.Read();
real_t *Y = q_det.Write();
const int id = (vdim<<8) | (D1D<<4) | Q1D;
if (dim == 1)
{
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D,
"Orders higher than " << DeviceDofQuadLimits::Get().MAX_D1D-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D,
"Quadrature rules with more than "
<< DeviceDofQuadLimits::Get().MAX_Q1D << " 1D points are not supported!");
Det1D(NE, G, X, Y, D1D, Q1D);
return;
}
if (dim == 2)
{
switch (id)
{
case 0x222: return Det2D<2,2>(NE,B,G,X,Y);
case 0x223: return Det2D<2,3>(NE,B,G,X,Y);
case 0x224: return Det2D<2,4>(NE,B,G,X,Y);
case 0x226: return Det2D<2,6>(NE,B,G,X,Y);
case 0x234: return Det2D<3,4>(NE,B,G,X,Y);
case 0x236: return Det2D<3,6>(NE,B,G,X,Y);
case 0x244: return Det2D<4,4>(NE,B,G,X,Y);
case 0x246: return Det2D<4,6>(NE,B,G,X,Y);
case 0x256: return Det2D<5,6>(NE,B,G,X,Y);
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
<< MQ << " 1D points are not supported!");
if (vdim == 2) { Det2D(NE,B,G,X,Y,D1D,Q1D); }
else if (vdim == 3) { Det2DSurface(NE,B,G,X,Y,D1D,Q1D); }
else { MFEM_ABORT("Invalid space dimension."); }
return;
}
}
}
if (dim == 3)
{
switch (id)
{
case 0x324: return Det3D<2,4>(NE,B,G,X,Y);
case 0x333: return Det3D<3,3>(NE,B,G,X,Y);
case 0x335: return Det3D<3,5>(NE,B,G,X,Y);
case 0x336: return Det3D<3,6>(NE,B,G,X,Y);
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_DET_1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_DET_1D;
// Highest orders that fit in shared memory
if (D1D <= MD && Q1D <= MQ)
{ return Det3D<0,0,true>(NE,B,G,X,Y,D1D,Q1D); }
// Last fall-back will use global memory
return Det3D<0,0,false>(
NE,B,G,X,Y,D1D,Q1D,&d_buff);
}
}
}
MFEM_ABORT("Kernel " << std::hex << id << std::dec << " not supported yet");
using k = QuadratureInterpolator::DetKernels;
// 2D
k::Specialization<2,2,2,2>::Add();
k::Specialization<2,2,2,3>::Add();
k::Specialization<2,2,2,4>::Add();
k::Specialization<2,2,2,6>::Add();
k::Specialization<2,2,3,4>::Add();
k::Specialization<2,2,3,6>::Add();
k::Specialization<2,2,4,4>::Add();
k::Specialization<2,2,4,6>::Add();
k::Specialization<2,2,5,6>::Add();
// 3D
k::Specialization<3,3,2,4>::Add();
k::Specialization<3,3,3,3>::Add();
k::Specialization<3,3,3,5>::Add();
k::Specialization<3,3,3,6>::Add();
}
} // namespace quadrature_interpolator
} // namespace internal
/// @cond Suppress_Doxygen_warnings
namespace
{
using DetKernel = QuadratureInterpolator::DetKernelType;
}
template<int DIM, int SDIM, int D1D, int Q1D>
DetKernel QuadratureInterpolator::DetKernels::Kernel()
{
if (DIM == 1) { return internal::quadrature_interpolator::Det1D; }
else if (DIM == 2 && SDIM == 2) { return internal::quadrature_interpolator::Det2D<D1D, Q1D>; }
else if (DIM == 2 && SDIM == 3) { return internal::quadrature_interpolator::Det2DSurface<D1D, Q1D>; }
else if (DIM == 3) { return internal::quadrature_interpolator::Det3D<D1D, Q1D>; }
else { MFEM_ABORT(""); }
}
DetKernel QuadratureInterpolator::DetKernels::Fallback(
int DIM, int SDIM, int D1D, int Q1D)
{
if (DIM == 1) { return internal::quadrature_interpolator::Det1D; }
else if (DIM == 2 && SDIM == 2) { return internal::quadrature_interpolator::Det2D; }
else if (DIM == 2 && SDIM == 3) { return internal::quadrature_interpolator::Det2DSurface; }
else if (DIM == 3)
{
const int MD = DeviceDofQuadLimits::Get().MAX_DET_1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_DET_1D;
if (D1D <= MD && Q1D <= MQ) { return internal::quadrature_interpolator::Det3D<0,0,true>; }
else { return internal::quadrature_interpolator::Det3D<0,0,false>; }
}
else { MFEM_ABORT(""); }
}
/// @endcond
} // namespace mfem
-64
View File
@@ -1,64 +0,0 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
// Internal header, included only by .cpp files
#include "../quadinterpolator.hpp"
namespace mfem
{
namespace internal
{
namespace quadrature_interpolator
{
// Tensor-product evaluation of quadrature point values: dispatch function.
template<QVectorLayout VL>
void TensorValues(const int NE,
const int vdim,
const DofToQuad &maps,
const Vector &e_vec,
Vector &q_val);
// Tensor-product evaluation of quadrature point derivatives: dispatch function.
template<QVectorLayout VL>
void TensorDerivatives(const int NE,
const int vdim,
const DofToQuad &maps,
const Vector &e_vec,
Vector &q_der);
// Tensor-product evaluation of quadrature point physical derivatives: dispatch
// function.
template<QVectorLayout VL>
void TensorPhysDerivatives(const int NE,
const int vdim,
const DofToQuad &maps,
const GeometricFactors &geom,
const Vector &e_vec,
Vector &q_der);
// Tensor-product evaluation of quadrature point determinants: dispatch
// function.
void TensorDeterminants(const int NE,
const int vdim,
const DofToQuad &maps,
const Vector &e_vec,
Vector &q_det,
Vector &d_buff);
} // namespace quadrature_interpolator
} // namespace internal
} // namespace mfem
+21 -1
View File
@@ -12,6 +12,9 @@
// Internal header, included only by .cpp files.
// Template function implementations.
#ifndef MFEM_QUADINTERP_EVAL
#define MFEM_QUADINTERP_EVAL
#include "../quadinterpolator.hpp"
#include "../../general/forall.hpp"
#include "../../linalg/dtensor.hpp"
@@ -63,7 +66,7 @@ static void Values1D(const int NE,
// Template compute kernel for Values in 2D: tensor product version.
template<QVectorLayout Q_LAYOUT,
int T_VDIM = 0, int T_D1D = 0, int T_Q1D = 0,
int T_NBZ = 1, int MAX_D1D = 0, int MAX_Q1D = 0>
int T_NBZ = 1>
static void Values2D(const int NE,
const real_t *b_,
const real_t *x_,
@@ -193,4 +196,21 @@ static void Values3D(const int NE,
} // namespace internal
/// @cond Suppress_Doxygen_warnings
template<int DIM, QVectorLayout Q_LAYOUT,
int VDIM, int D1D, int Q1D, int NBZ>
QuadratureInterpolator::TensorEvalKernelType
QuadratureInterpolator::TensorEvalKernels::Kernel()
{
if (DIM == 1) { return internal::quadrature_interpolator::Values1D<Q_LAYOUT>; }
else if (DIM == 2) { return internal::quadrature_interpolator::Values2D<Q_LAYOUT, VDIM, D1D, Q1D, NBZ>; }
else if (DIM == 3) { return internal::quadrature_interpolator::Values3D<Q_LAYOUT, VDIM, D1D, Q1D>; }
else { MFEM_ABORT(""); }
}
/// @endcond
} // namespace mfem
#endif
+47 -115
View File
@@ -10,143 +10,75 @@
// CONTRIBUTING.md for details.
#include "../quadinterpolator.hpp"
#include "dispatch.hpp"
#include "eval.hpp"
namespace mfem
{
namespace internal
{
namespace quadrature_interpolator
{
// Tensor-product evaluation of quadrature point values: dispatch function.
// Instantiation for the case QVectorLayout::byNODES.
template<>
void TensorValues<QVectorLayout::byNODES>(const int NE,
const int vdim,
const DofToQuad &maps,
const Vector &e_vec,
Vector &q_val)
void InitEvalByNodesKernels()
{
if (NE == 0) { return; }
const int dim = maps.FE->GetDim();
const int D1D = maps.ndof;
const int Q1D = maps.nqpt;
const real_t *B = maps.B.Read();
const real_t *X = e_vec.Read();
real_t *Y = q_val.Write();
using k = QuadratureInterpolator::TensorEvalKernels;
constexpr QVectorLayout L = QVectorLayout::byNODES;
// 2D
k::Specialization<2,QVectorLayout::byNODES,1,3,3>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,1,2,4>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,1,3,2>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,1,3,4>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,1,4,3>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,1,4,4>::Opt<1>::Add();
const int id = (vdim<<8) | (D1D<<4) | Q1D;
k::Specialization<2,QVectorLayout::byNODES,2,2,2>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,2,2,3>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,2,2,4>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,2,2,5>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,2,2,6>::Opt<1>::Add();
if (dim == 1)
{
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D,
"Orders higher than " << DeviceDofQuadLimits::Get().MAX_D1D-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D,
"Quadrature rules with more than "
<< DeviceDofQuadLimits::Get().MAX_Q1D << " 1D points are not supported!");
Values1D<L>(NE, B, X, Y, vdim, D1D, Q1D);
return;
}
if (dim == 2)
{
switch (id)
{
case 0x133: return Values2D<L,1,3,3>(NE,B,X,Y);
case 0x124: return Values2D<L,1,2,4>(NE,B,X,Y);
case 0x132: return Values2D<L,1,3,2>(NE,B,X,Y);
case 0x134: return Values2D<L,1,3,4>(NE,B,X,Y);
case 0x143: return Values2D<L,1,4,3>(NE,B,X,Y);
case 0x144: return Values2D<L,1,4,4>(NE,B,X,Y);
k::Specialization<2,QVectorLayout::byNODES,2,3,3>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,2,3,4>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,2,3,6>::Opt<1>::Add();
case 0x222: return Values2D<L,2,2,2>(NE,B,X,Y);
case 0x223: return Values2D<L,2,2,3>(NE,B,X,Y);
case 0x224: return Values2D<L,2,2,4>(NE,B,X,Y);
case 0x225: return Values2D<L,2,2,5>(NE,B,X,Y);
case 0x226: return Values2D<L,2,2,6>(NE,B,X,Y);
k::Specialization<2,QVectorLayout::byNODES,2,4,3>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,2,4,4>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,2,4,5>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,2,4,6>::Opt<1>::Add();
k::Specialization<2,QVectorLayout::byNODES,2,4,7>::Opt<1>::Add();
case 0x233: return Values2D<L,2,3,3>(NE,B,X,Y);
case 0x234: return Values2D<L,2,3,4>(NE,B,X,Y);
case 0x236: return Values2D<L,2,3,6>(NE,B,X,Y);
k::Specialization<2,QVectorLayout::byNODES,2,5,6>::Opt<1>::Add();
case 0x243: return Values2D<L,2,4,3>(NE,B,X,Y);
case 0x244: return Values2D<L,2,4,4>(NE,B,X,Y);
case 0x245: return Values2D<L,2,4,5>(NE,B,X,Y);
case 0x246: return Values2D<L,2,4,6>(NE,B,X,Y);
case 0x247: return Values2D<L,2,4,7>(NE,B,X,Y);
// 3D
k::Specialization<3,QVectorLayout::byNODES,1,2,4>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,1,3,3>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,1,3,4>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,1,3,6>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,1,4,3>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,1,4,4>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,1,4,8>::Opt<1>::Add();
case 0x256: return Values2D<L,2,5,6>(NE,B,X,Y);
k::Specialization<3,QVectorLayout::byNODES,2,2,2>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,2,2,3>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,2,3,4>::Opt<1>::Add();
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
<< MQ << " 1D points are not supported!");
Values2D<L>(NE,B,X,Y,vdim,D1D,Q1D);
return;
}
}
}
if (dim == 3)
{
switch (id)
{
case 0x124: return Values3D<L,1,2,4>(NE,B,X,Y);
case 0x133: return Values3D<L,1,3,3>(NE,B,X,Y);
case 0x134: return Values3D<L,1,3,4>(NE,B,X,Y);
case 0x136: return Values3D<L,1,3,6>(NE,B,X,Y);
case 0x143: return Values3D<L,1,4,3>(NE,B,X,Y);
case 0x144: return Values3D<L,1,4,4>(NE,B,X,Y);
case 0x148: return Values3D<L,1,4,8>(NE,B,X,Y);
k::Specialization<3,QVectorLayout::byNODES,3,2,3>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,3,2,4>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,3,2,5>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,3,2,6>::Opt<1>::Add();
case 0x222: return Values3D<L,2,2,2>(NE,B,X,Y);
case 0x223: return Values3D<L,2,2,3>(NE,B,X,Y);
case 0x234: return Values3D<L,2,3,4>(NE,B,X,Y);
k::Specialization<3,QVectorLayout::byNODES,3,3,3>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,3,3,4>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,3,3,5>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,3,3,6>::Opt<1>::Add();
case 0x323: return Values3D<L,3,2,3>(NE,B,X,Y);
case 0x324: return Values3D<L,3,2,4>(NE,B,X,Y);
case 0x325: return Values3D<L,3,2,5>(NE,B,X,Y);
case 0x326: return Values3D<L,3,2,6>(NE,B,X,Y);
case 0x333: return Values3D<L,3,3,3>(NE,B,X,Y);
case 0x334: return Values3D<L,3,3,4>(NE,B,X,Y);
case 0x335: return Values3D<L,3,3,5>(NE,B,X,Y);
case 0x336: return Values3D<L,3,3,6>(NE,B,X,Y);
case 0x343: return Values3D<L,3,4,3>(NE,B,X,Y);
case 0x344: return Values3D<L,3,4,4>(NE,B,X,Y);
case 0x346: return Values3D<L,3,4,6>(NE,B,X,Y);
case 0x347: return Values3D<L,3,4,7>(NE,B,X,Y);
case 0x348: return Values3D<L,3,4,8>(NE,B,X,Y);
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
<< MQ << " 1D points are not supported!");
Values3D<L>(NE,B,X,Y,vdim,D1D,Q1D);
return;
}
}
}
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
MFEM_ABORT("Kernel not supported yet");
k::Specialization<3,QVectorLayout::byNODES,3,4,3>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,3,4,4>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,3,4,6>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,3,4,7>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,3,4,8>::Opt<1>::Add();
}
} // namespace quadrature_interpolator
} // namespace internal
} // namespace mfem
+25 -97
View File
@@ -10,117 +10,45 @@
// CONTRIBUTING.md for details.
#include "../quadinterpolator.hpp"
#include "dispatch.hpp"
#include "eval.hpp"
namespace mfem
{
namespace internal
{
namespace quadrature_interpolator
{
// Tensor-product evaluation of quadrature point values: dispatch function.
// Instantiation for the case QVectorLayout::byVDIM.
template<>
void TensorValues<QVectorLayout::byVDIM>(const int NE,
const int vdim,
const DofToQuad &maps,
const Vector &e_vec,
Vector &q_val)
void InitEvalByVDimKernels()
{
if (NE == 0) { return; }
const int dim = maps.FE->GetDim();
const int D1D = maps.ndof;
const int Q1D = maps.nqpt;
const real_t *B = maps.B.Read();
const real_t *X = e_vec.Read();
real_t *Y = q_val.Write();
using k = QuadratureInterpolator::TensorEvalKernels;
// 2D
k::Specialization<2,QVectorLayout::byVDIM,1,2,4>::Opt<8>::Add();
k::Specialization<2,QVectorLayout::byVDIM,1,3,6>::Opt<4>::Add();
k::Specialization<2,QVectorLayout::byVDIM,1,4,8>::Opt<2>::Add();
constexpr QVectorLayout L = QVectorLayout::byVDIM;
k::Specialization<2,QVectorLayout::byVDIM,2,2,4>::Opt<8>::Add();
k::Specialization<2,QVectorLayout::byVDIM,2,3,4>::Opt<8>::Add();
k::Specialization<2,QVectorLayout::byVDIM,2,3,6>::Opt<4>::Add();
k::Specialization<2,QVectorLayout::byVDIM,2,4,8>::Opt<2>::Add();
// 3D
k::Specialization<3,QVectorLayout::byVDIM,1,2,4>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,1,3,6>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,1,4,8>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,3,2,4>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,3,3,6>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,3,4,8>::Opt<1>::Add();
const int id = (vdim<<8) | (D1D<<4) | Q1D;
if (dim == 1)
{
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D,
"Orders higher than " << DeviceDofQuadLimits::Get().MAX_D1D-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D,
"Quadrature rules with more than "
<< DeviceDofQuadLimits::Get().MAX_Q1D << " 1D points are not supported!");
Values1D<L>(NE, B, X, Y, vdim, D1D, Q1D);
return;
}
if (dim == 2)
{
switch (id)
{
case 0x124: return Values2D<L,1,2,4,8>(NE,B,X,Y);
case 0x136: return Values2D<L,1,3,6,4>(NE,B,X,Y);
case 0x148: return Values2D<L,1,4,8,2>(NE,B,X,Y);
case 0x224: return Values2D<L,2,2,4,8>(NE,B,X,Y);
case 0x234: return Values2D<L,2,3,4,8>(NE,B,X,Y);
case 0x236: return Values2D<L,2,3,6,4>(NE,B,X,Y);
case 0x248: return Values2D<L,2,4,8,2>(NE,B,X,Y);
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
<< MQ << " 1D points are not supported!");
Values2D<L>(NE,B,X,Y,vdim,D1D,Q1D);
return;
}
}
}
if (dim == 3)
{
switch (id)
{
case 0x124: return Values3D<L,1,2,4>(NE,B,X,Y);
case 0x136: return Values3D<L,1,3,6>(NE,B,X,Y);
case 0x148: return Values3D<L,1,4,8>(NE,B,X,Y);
case 0x324: return Values3D<L,3,2,4>(NE,B,X,Y);
case 0x336: return Values3D<L,3,3,6>(NE,B,X,Y);
case 0x348: return Values3D<L,3,4,8>(NE,B,X,Y);
// Used for LOR batched assembly
case 0x322: return Values3D<L,3,2,2>(NE,B,X,Y);
case 0x333: return Values3D<L,3,3,3>(NE,B,X,Y);
case 0x344: return Values3D<L,3,4,4>(NE,B,X,Y);
case 0x355: return Values3D<L,3,5,5>(NE,B,X,Y);
case 0x366: return Values3D<L,3,6,6>(NE,B,X,Y);
case 0x377: return Values3D<L,3,7,7>(NE,B,X,Y);
case 0x388: return Values3D<L,3,8,8>(NE,B,X,Y);
case 0x399: return Values3D<L,3,9,9>(NE,B,X,Y);
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
<< MQ << " 1D points are not supported!");
Values3D<L>(NE,B,X,Y,vdim,D1D,Q1D);
return;
}
}
}
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
MFEM_ABORT("Kernel not supported yet");
k::Specialization<3,QVectorLayout::byVDIM,3,2,2>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,3,3,3>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,3,4,4>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,3,5,5>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,3,6,6>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,3,7,7>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,3,8,8>::Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,3,9,9>::Opt<1>::Add();
}
} // namespace quadrature_interpolator
} // namespace internal
} // namespace mfem
+23
View File
@@ -12,6 +12,9 @@
// Internal header, included only by .cpp files.
// Template function implementations.
#ifndef MFEM_QUADINTERP_GRAD
#define MFEM_QUADINTERP_GRAD
#include "../quadinterpolator.hpp"
#include "../../general/forall.hpp"
#include "../../linalg/dtensor.hpp"
@@ -29,6 +32,7 @@ namespace quadrature_interpolator
template<QVectorLayout Q_LAYOUT, bool GRAD_PHYS>
static void Derivatives1D(const int NE,
const real_t *b_,
const real_t *g_,
const real_t *j_,
const real_t *x_,
@@ -38,6 +42,7 @@ static void Derivatives1D(const int NE,
const int d1d,
const int q1d)
{
MFEM_CONTRACT_VAR(b_);
const auto g = Reshape(g_, q1d, d1d);
const auto j = Reshape(j_, q1d, sdim, NE);
const auto x = Reshape(x_, d1d, vdim, NE);
@@ -232,6 +237,7 @@ static void Derivatives3D(const int NE,
const real_t *j_,
const real_t *x_,
real_t *y_,
const int sdim = 3,
const int vdim = 0,
const int d1d = 0,
const int q1d = 0)
@@ -370,4 +376,21 @@ static void Derivatives3D(const int NE,
} // namespace internal
/// @cond Suppress_Doxygen_warnings
template<int DIM, QVectorLayout Q_LAYOUT, bool GRAD_PHYS,
int VDIM, int D1D, int Q1D, int NBZ>
QuadratureInterpolator::GradKernelType
QuadratureInterpolator::GradKernels::Kernel()
{
if (DIM == 1) { return internal::quadrature_interpolator::Derivatives1D<Q_LAYOUT, GRAD_PHYS>; }
else if (DIM == 2) { return internal::quadrature_interpolator::Derivatives2D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D, NBZ>; }
else if (DIM == 3) { return internal::quadrature_interpolator::Derivatives3D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D>; }
else { MFEM_ABORT(""); }
}
/// @endcond
} // namespace mfem
#endif
+45 -104
View File
@@ -9,128 +9,69 @@
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "dispatch.hpp"
#include "../quadinterpolator.hpp"
#include "grad.hpp"
namespace mfem
{
namespace internal
{
namespace quadrature_interpolator
{
// Tensor-product evaluation of quadrature point derivatives: dispatch function.
// Instantiation for the case QVectorLayout::byNODES.
template<>
void TensorDerivatives<QVectorLayout::byNODES>(const int NE,
const int vdim,
const DofToQuad &maps,
const Vector &e_vec,
Vector &q_der)
template <bool P>
void InitGradByNodesKernels()
{
if (NE == 0) { return; }
const int dim = maps.FE->GetDim();
const int D1D = maps.ndof;
const int Q1D = maps.nqpt;
const real_t *B = maps.B.Read();
const real_t *G = maps.G.Read();
const real_t *J = nullptr; // not used in DERIVATIVES (non-GRAD_PHYS) mode
const real_t *X = e_vec.Read();
real_t *Y = q_der.Write();
using k = QuadratureInterpolator::GradKernels;
// 2D
k::Specialization<2,QVectorLayout::byNODES,P,1,3,3>::template Opt<16>::Add();
k::Specialization<2,QVectorLayout::byNODES,P,1,3,4>::template Opt<16>::Add();
k::Specialization<2,QVectorLayout::byNODES,P,1,4,3>::template Opt<16>::Add();
k::Specialization<2,QVectorLayout::byNODES,P,1,4,4>::template Opt<16>::Add();
constexpr QVectorLayout L = QVectorLayout::byNODES;
constexpr bool P = false; // GRAD_PHYS
k::Specialization<2,QVectorLayout::byNODES,P,2,2,2>::template Opt<16>::Add();
k::Specialization<2,QVectorLayout::byNODES,P,2,2,3>::template Opt<8>::Add();
k::Specialization<2,QVectorLayout::byNODES,P,2,2,4>::template Opt<4>::Add();
k::Specialization<2,QVectorLayout::byNODES,P,2,2,5>::template Opt<4>::Add();
k::Specialization<2,QVectorLayout::byNODES,P,2,2,6>::template Opt<2>::Add();
const int id = (vdim<<8) | (D1D<<4) | Q1D;
k::Specialization<2,QVectorLayout::byNODES,P,2,3,3>::template Opt<2>::Add();
k::Specialization<2,QVectorLayout::byNODES,P,2,3,4>::template Opt<4>::Add();
k::Specialization<2,QVectorLayout::byNODES,P,2,4,3>::template Opt<4>::Add();
k::Specialization<2,QVectorLayout::byNODES,P,2,3,6>::template Opt<2>::Add();
if (dim == 1)
{
return Derivatives1D<L,P>(NE,G,J,X,Y,dim,vdim,D1D,Q1D);
}
if (dim == 2)
{
switch (id)
{
case 0x133: return Derivatives2D<L,P,1,3,3,16>(NE,B,G,J,X,Y);
case 0x134: return Derivatives2D<L,P,1,3,4,16>(NE,B,G,J,X,Y);
case 0x143: return Derivatives2D<L,P,1,4,3,16>(NE,B,G,J,X,Y);
case 0x144: return Derivatives2D<L,P,1,4,4,16>(NE,B,G,J,X,Y);
k::Specialization<2,QVectorLayout::byNODES,P,2,4,4>::template Opt<2>::Add();
k::Specialization<2,QVectorLayout::byNODES,P,2,4,5>::template Opt<2>::Add();
k::Specialization<2,QVectorLayout::byNODES,P,2,4,6>::template Opt<2>::Add();
k::Specialization<2,QVectorLayout::byNODES,P,2,4,7>::template Opt<2>::Add();
case 0x222: return Derivatives2D<L,P,2,2,2,16>(NE,B,G,J,X,Y);
case 0x223: return Derivatives2D<L,P,2,2,3,8>(NE,B,G,J,X,Y);
case 0x224: return Derivatives2D<L,P,2,2,4,4>(NE,B,G,J,X,Y);
case 0x225: return Derivatives2D<L,P,2,2,5,4>(NE,B,G,J,X,Y);
case 0x226: return Derivatives2D<L,P,2,2,6,2>(NE,B,G,J,X,Y);
k::Specialization<2,QVectorLayout::byNODES,P,2,5,6>::template Opt<2>::Add();
// 3D
k::Specialization<3,QVectorLayout::byNODES,P,1,2,4>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,1,3,3>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,1,3,4>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,1,3,6>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,1,4,4>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,1,4,8>::template Opt<1>::Add();
case 0x233: return Derivatives2D<L,P,2,3,3,2>(NE,B,G,J,X,Y);
case 0x234: return Derivatives2D<L,P,2,3,4,4>(NE,B,G,J,X,Y);
case 0x243: return Derivatives2D<L,P,2,4,3,4>(NE,B,G,J,X,Y);
case 0x236: return Derivatives2D<L,P,2,3,6,2>(NE,B,G,J,X,Y);
k::Specialization<3,QVectorLayout::byNODES,P,3,2,3>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,3,2,4>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,3,2,5>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,3,2,6>::template Opt<1>::Add();
case 0x244: return Derivatives2D<L,P,2,4,4,2>(NE,B,G,J,X,Y);
case 0x245: return Derivatives2D<L,P,2,4,5,2>(NE,B,G,J,X,Y);
case 0x246: return Derivatives2D<L,P,2,4,6,2>(NE,B,G,J,X,Y);
case 0x247: return Derivatives2D<L,P,2,4,7,2>(NE,B,G,J,X,Y);
case 0x256: return Derivatives2D<L,P,2,5,6,2>(NE,B,G,J,X,Y);
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
if (D1D > MD || Q1D > MQ)
{
MFEM_ABORT("");
}
Derivatives2D<L,P>(NE,B,G,J,X,Y,dim,vdim,D1D,Q1D);
return;
}
}
}
if (dim == 3)
{
switch (id)
{
case 0x124: return Derivatives3D<L,P,1,2,4>(NE,B,G,J,X,Y);
case 0x133: return Derivatives3D<L,P,1,3,3>(NE,B,G,J,X,Y);
case 0x134: return Derivatives3D<L,P,1,3,4>(NE,B,G,J,X,Y);
case 0x136: return Derivatives3D<L,P,1,3,6>(NE,B,G,J,X,Y);
case 0x144: return Derivatives3D<L,P,1,4,4>(NE,B,G,J,X,Y);
case 0x148: return Derivatives3D<L,P,1,4,8>(NE,B,G,J,X,Y);
case 0x323: return Derivatives3D<L,P,3,2,3>(NE,B,G,J,X,Y);
case 0x324: return Derivatives3D<L,P,3,2,4>(NE,B,G,J,X,Y);
case 0x325: return Derivatives3D<L,P,3,2,5>(NE,B,G,J,X,Y);
case 0x326: return Derivatives3D<L,P,3,2,6>(NE,B,G,J,X,Y);
case 0x333: return Derivatives3D<L,P,3,3,3>(NE,B,G,J,X,Y);
case 0x334: return Derivatives3D<L,P,3,3,4>(NE,B,G,J,X,Y);
case 0x335: return Derivatives3D<L,P,3,3,5>(NE,B,G,J,X,Y);
case 0x336: return Derivatives3D<L,P,3,3,6>(NE,B,G,J,X,Y);
case 0x344: return Derivatives3D<L,P,3,4,4>(NE,B,G,J,X,Y);
case 0x346: return Derivatives3D<L,P,3,4,6>(NE,B,G,J,X,Y);
case 0x347: return Derivatives3D<L,P,3,4,7>(NE,B,G,J,X,Y);
case 0x348: return Derivatives3D<L,P,3,4,8>(NE,B,G,J,X,Y);
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
<< MQ << " 1D points are not supported!");
Derivatives3D<L,P>(NE,B,G,J,X,Y,vdim,D1D,Q1D);
return;
}
}
}
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
MFEM_ABORT("Kernel not supported yet");
k::Specialization<3,QVectorLayout::byNODES,P,3,3,3>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,3,3,4>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,3,3,5>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,3,3,6>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,3,4,4>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,3,4,6>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,3,4,7>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byNODES,P,3,4,8>::template Opt<1>::Add();
}
template void InitGradByNodesKernels<true>();
template void InitGradByNodesKernels<false>();
} // namespace quadrature_interpolator
} // namespace internal
} // namespace mfem
+22 -81
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@@ -9,100 +9,41 @@
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "dispatch.hpp"
#include "../quadinterpolator.hpp"
#include "grad.hpp"
namespace mfem
{
namespace internal
{
namespace quadrature_interpolator
{
// Tensor-product evaluation of quadrature point derivatives: dispatch function.
// Instantiation for the case QVectorLayout::byVDIM.
template<>
void TensorDerivatives<QVectorLayout::byVDIM>(const int NE,
const int vdim,
const DofToQuad &maps,
const Vector &e_vec,
Vector &q_der)
template <bool P>
void InitGradByVDimKernels()
{
if (NE == 0) { return; }
const int dim = maps.FE->GetDim();
const int D1D = maps.ndof;
const int Q1D = maps.nqpt;
const real_t *B = maps.B.Read();
const real_t *G = maps.G.Read();
const real_t *J = nullptr; // not used in DERIVATIVES (non-GRAD_PHYS) mode
const real_t *X = e_vec.Read();
real_t *Y = q_der.Write();
using k = QuadratureInterpolator::GradKernels;
// 2D
k::Specialization<2,QVectorLayout::byVDIM,P,1,3,4>::template Opt<8>::Add();
k::Specialization<2,QVectorLayout::byVDIM,P,1,4,6>::template Opt<4>::Add();
k::Specialization<2,QVectorLayout::byVDIM,P,1,5,8>::template Opt<2>::Add();
constexpr QVectorLayout L = QVectorLayout::byVDIM;
constexpr bool P = false; // GRAD_PHYS
const int id = (vdim<<8) | (D1D<<4) | Q1D;
if (dim == 1)
{
return Derivatives1D<L,P>(NE,G,J,X,Y,dim,vdim,D1D,Q1D);
}
if (dim == 2)
{
switch (id)
{
case 0x134: return Derivatives2D<L,P,1,3,4,8>(NE,B,G,J,X,Y);
case 0x146: return Derivatives2D<L,P,1,4,6,4>(NE,B,G,J,X,Y);
case 0x158: return Derivatives2D<L,P,1,5,8,2>(NE,B,G,J,X,Y);
case 0x234: return Derivatives2D<L,P,2,3,4,8>(NE,B,G,J,X,Y);
case 0x246: return Derivatives2D<L,P,2,4,6,4>(NE,B,G,J,X,Y);
case 0x258: return Derivatives2D<L,P,2,5,8,2>(NE,B,G,J,X,Y);
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
<< MQ << " 1D points are not supported!");
Derivatives2D<L,P>(NE,B,G,J,X,Y,dim,vdim,D1D,Q1D);
return;
}
}
}
if (dim == 3)
{
switch (id)
{
case 0x134: return Derivatives3D<L,P,1,3,4>(NE,B,G,J,X,Y);
case 0x146: return Derivatives3D<L,P,1,4,6>(NE,B,G,J,X,Y);
case 0x158: return Derivatives3D<L,P,1,5,8>(NE,B,G,J,X,Y);
case 0x334: return Derivatives3D<L,P,3,3,4>(NE,B,G,J,X,Y);
case 0x346: return Derivatives3D<L,P,3,4,6>(NE,B,G,J,X,Y);
case 0x358: return Derivatives3D<L,P,3,5,8>(NE,B,G,J,X,Y);
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
<< MQ << " 1D points are not supported!");
Derivatives3D<L,P>(NE,B,G,J,X,Y,vdim,D1D,Q1D);
return;
}
}
}
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
MFEM_ABORT("Kernel not supported yet");
k::Specialization<2,QVectorLayout::byVDIM,P,2,3,3>::template Opt<8>::Add();
k::Specialization<2,QVectorLayout::byVDIM,P,2,3,4>::template Opt<8>::Add();
k::Specialization<2,QVectorLayout::byVDIM,P,2,4,6>::template Opt<4>::Add();
k::Specialization<2,QVectorLayout::byVDIM,P,2,5,8>::template Opt<2>::Add();
// 3D
k::Specialization<3,QVectorLayout::byVDIM,P,1,3,4>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,P,1,4,6>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,P,1,5,8>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,P,3,3,4>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,P,3,4,6>::template Opt<1>::Add();
k::Specialization<3,QVectorLayout::byVDIM,P,3,5,8>::template Opt<1>::Add();
}
template void InitGradByVDimKernels<true>();
template void InitGradByVDimKernels<false>();
} // namespace quadrature_interpolator
} // namespace internal
} // namespace mfem
-123
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@@ -1,123 +0,0 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "dispatch.hpp"
#include "grad.hpp"
namespace mfem
{
namespace internal
{
namespace quadrature_interpolator
{
// Tensor-product evaluation of quadrature point physical derivatives: dispatch
// function.
// Instantiation for the case QVectorLayout::byNODES.
template<>
void TensorPhysDerivatives<QVectorLayout::byNODES>(const int NE,
const int vdim,
const DofToQuad &maps,
const GeometricFactors &geom,
const Vector &e_vec,
Vector &q_der)
{
if (NE == 0) { return; }
const int dim = maps.FE->GetDim();
const int D1D = maps.ndof;
const int Q1D = maps.nqpt;
const int sdim = geom.mesh->SpaceDimension();
const real_t *B = maps.B.Read();
const real_t *G = maps.G.Read();
const real_t *J = geom.J.Read();
const real_t *X = e_vec.Read();
real_t *Y = q_der.Write();
constexpr QVectorLayout L = QVectorLayout::byNODES;
constexpr bool P = true; // GRAD_PHYS
const int id = (vdim<<8) | (D1D<<4) | Q1D;
if (dim == 1)
{
return Derivatives1D<L,P>(NE,G,J,X,Y,sdim,vdim,D1D,Q1D);
}
if (dim == 2)
{
switch (id)
{
case 0x133: return Derivatives2D<L,P,1,3,3,8>(NE,B,G,J,X,Y,sdim);
case 0x134: return Derivatives2D<L,P,1,3,4,8>(NE,B,G,J,X,Y,sdim);
case 0x143: return Derivatives2D<L,P,1,4,3,4>(NE,B,G,J,X,Y,sdim);
case 0x144: return Derivatives2D<L,P,1,4,4,4>(NE,B,G,J,X,Y,sdim);
case 0x146: return Derivatives2D<L,P,1,4,6,4>(NE,B,G,J,X,Y,sdim);
case 0x158: return Derivatives2D<L,P,1,5,8,2>(NE,B,G,J,X,Y,sdim);
case 0x233: return Derivatives2D<L,P,2,3,3,8>(NE,B,G,J,X,Y,sdim);
case 0x234: return Derivatives2D<L,P,2,3,4,8>(NE,B,G,J,X,Y,sdim);
case 0x243: return Derivatives2D<L,P,2,4,3,4>(NE,B,G,J,X,Y,sdim);
case 0x244: return Derivatives2D<L,P,2,4,4,4>(NE,B,G,J,X,Y,sdim);
case 0x246: return Derivatives2D<L,P,2,4,6,4>(NE,B,G,J,X,Y,sdim);
case 0x258: return Derivatives2D<L,P,2,5,8,2>(NE,B,G,J,X,Y,sdim);
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
<< MQ << " 1D points are not supported!");
Derivatives2D<L,P>(NE,B,G,J,X,Y,sdim,vdim,D1D,Q1D);
return;
}
}
}
if (dim == 3)
{
switch (id)
{
case 0x133: return Derivatives3D<L,P,1,3,3>(NE,B,G,J,X,Y);
case 0x134: return Derivatives3D<L,P,1,3,4>(NE,B,G,J,X,Y);
case 0x144: return Derivatives3D<L,P,1,4,4>(NE,B,G,J,X,Y);
case 0x146: return Derivatives3D<L,P,1,4,6>(NE,B,G,J,X,Y);
case 0x158: return Derivatives3D<L,P,1,5,8>(NE,B,G,J,X,Y);
case 0x333: return Derivatives3D<L,P,3,3,3>(NE,B,G,J,X,Y);
case 0x334: return Derivatives3D<L,P,3,3,4>(NE,B,G,J,X,Y);
case 0x344: return Derivatives3D<L,P,3,4,4>(NE,B,G,J,X,Y);
case 0x346: return Derivatives3D<L,P,3,4,6>(NE,B,G,J,X,Y);
case 0x358: return Derivatives3D<L,P,3,5,8>(NE,B,G,J,X,Y);
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
<< MQ << " 1D points are not supported!");
Derivatives3D<L,P>(NE,B,G,J,X,Y,vdim,D1D,Q1D);
return;
}
}
}
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
MFEM_ABORT("Unknown kernel");
}
} // namespace quadrature_interpolator
} // namespace internal
} // namespace mfem
-114
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@@ -1,114 +0,0 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "dispatch.hpp"
#include "grad.hpp"
namespace mfem
{
namespace internal
{
namespace quadrature_interpolator
{
// Tensor-product evaluation of quadrature point physical derivatives: dispatch
// function.
// Instantiation for the case QVectorLayout::byVDIM.
template<>
void TensorPhysDerivatives<QVectorLayout::byVDIM>(const int NE,
const int vdim,
const DofToQuad &maps,
const GeometricFactors &geom,
const Vector &e_vec,
Vector &q_der)
{
if (NE == 0) { return; }
const int dim = maps.FE->GetDim();
const int D1D = maps.ndof;
const int Q1D = maps.nqpt;
const int sdim = geom.mesh->SpaceDimension();
const real_t *B = maps.B.Read();
const real_t *G = maps.G.Read();
const real_t *J = geom.J.Read();
const real_t *X = e_vec.Read();
real_t *Y = q_der.Write();
constexpr QVectorLayout L = QVectorLayout::byVDIM;
constexpr bool P = true; // GRAD_PHYS
const int id = (vdim<<8) | (D1D<<4) | Q1D;
if (dim == 1)
{
return Derivatives1D<L,P>(NE,G,J,X,Y,sdim,vdim,D1D,Q1D);
}
if (dim == 2)
{
switch (id)
{
case 0x134: return Derivatives2D<L,P,1,3,4,8>(NE,B,G,J,X,Y,sdim);
case 0x146: return Derivatives2D<L,P,1,4,6,4>(NE,B,G,J,X,Y,sdim);
case 0x158: return Derivatives2D<L,P,1,5,8,2>(NE,B,G,J,X,Y,sdim);
case 0x233: return Derivatives2D<L,P,2,3,3,8>(NE,B,G,J,X,Y,sdim);
case 0x234: return Derivatives2D<L,P,2,3,4,8>(NE,B,G,J,X,Y,sdim);
case 0x246: return Derivatives2D<L,P,2,4,6,4>(NE,B,G,J,X,Y,sdim);
case 0x258: return Derivatives2D<L,P,2,5,8,2>(NE,B,G,J,X,Y,sdim);
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_D1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_Q1D;
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
<< MQ << " 1D points are not supported!");
Derivatives2D<L,P>(NE,B,G,J,X,Y,sdim,vdim,D1D,Q1D);
return;
}
}
}
if (dim == 3)
{
switch (id)
{
case 0x134: return Derivatives3D<L,P,1,3,4>(NE,B,G,J,X,Y);
case 0x146: return Derivatives3D<L,P,1,4,6>(NE,B,G,J,X,Y);
case 0x158: return Derivatives3D<L,P,1,5,8>(NE,B,G,J,X,Y);
case 0x334: return Derivatives3D<L,P,3,3,4>(NE,B,G,J,X,Y);
case 0x346: return Derivatives3D<L,P,3,4,6>(NE,B,G,J,X,Y);
case 0x358: return Derivatives3D<L,P,3,5,8>(NE,B,G,J,X,Y);
default:
{
const int MD = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
const int MQ = DeviceDofQuadLimits::Get().MAX_INTERP_1D;
MFEM_VERIFY(D1D <= MD, "Orders higher than " << MD-1
<< " are not supported!");
MFEM_VERIFY(Q1D <= MQ, "Quadrature rules with more than "
<< MQ << " 1D points are not supported!");
Derivatives3D<L,P>(NE,B,G,J,X,Y,vdim,D1D,Q1D);
return;
}
}
}
mfem::out << "Unknown kernel 0x" << std::hex << id << std::endl;
MFEM_ABORT("Unknown kernel");
}
} // namespace quadrature_interpolator
} // namespace internal
} // namespace mfem
+234 -187
View File
@@ -10,7 +10,8 @@
// CONTRIBUTING.md for details.
#include "quadinterpolator.hpp"
#include "qinterp/dispatch.hpp"
#include "qinterp/grad.hpp"
#include "qinterp/eval.hpp"
#include "qspace.hpp"
#include "../general/forall.hpp"
#include "../linalg/dtensor.hpp"
@@ -19,6 +20,38 @@
namespace mfem
{
namespace internal
{
namespace quadrature_interpolator
{
void InitEvalByNodesKernels();
void InitEvalByVDimKernels();
void InitEvalKernels();
void InitDetKernels();
template <bool P> void InitGradByNodesKernels();
template <bool P> void InitGradByVDimKernels();
}
}
QuadratureInterpolator::Kernels QuadratureInterpolator::kernels;
QuadratureInterpolator::Kernels::Kernels()
{
using namespace internal::quadrature_interpolator;
InitEvalByNodesKernels();
InitEvalByVDimKernels();
// Non-phys grad kernels
InitGradByNodesKernels<false>();
InitGradByVDimKernels<false>();
// Phys grad kernels
InitGradByNodesKernels<true>();
InitGradByVDimKernels<true>();
// Determinants
InitDetKernels();
// Non-tensor
InitEvalKernels();
}
QuadratureInterpolator::QuadratureInterpolator(const FiniteElementSpace &fes,
const IntegrationRule &ir):
@@ -467,6 +500,7 @@ void QuadratureInterpolator::Mult(const Vector &e_vec,
const int ne = fespace->GetNE();
if (ne == 0) { return; }
const int vdim = fespace->GetVDim();
const int sdim = fespace->GetMesh()->SpaceDimension();
const FiniteElement *fe = fespace->GetFE(0);
const bool use_tensor_eval =
use_tensor_products &&
@@ -477,6 +511,8 @@ void QuadratureInterpolator::Mult(const Vector &e_vec,
use_tensor_eval ? DofToQuad::TENSOR : DofToQuad::FULL;
const DofToQuad &maps = fe->GetDofToQuad(*ir, mode);
const int dim = maps.FE->GetDim();
const int nd = maps.ndof;
const int nq = maps.nqpt;
const GeometricFactors *geom = nullptr;
if (eval_flags & PHYSICAL_DERIVATIVES)
{
@@ -492,202 +528,31 @@ void QuadratureInterpolator::Mult(const Vector &e_vec,
if (use_tensor_eval)
{
// TODO: use fused kernels
if (q_layout == QVectorLayout::byNODES)
if (eval_flags & VALUES)
{
if (eval_flags & VALUES)
{
TensorValues<QVectorLayout::byNODES>(ne, vdim, maps, e_vec, q_val);
}
if (eval_flags & DERIVATIVES)
{
TensorDerivatives<QVectorLayout::byNODES>(
ne, vdim, maps, e_vec, q_der);
}
if (eval_flags & PHYSICAL_DERIVATIVES)
{
TensorPhysDerivatives<QVectorLayout::byNODES>(
ne, vdim, maps, *geom, e_vec, q_der);
}
TensorEvalKernels::Run(dim, q_layout, vdim, nd, nq, ne, maps.B.Read(),
e_vec.Read(), q_val.Write(), vdim, nd, nq);
}
if (q_layout == QVectorLayout::byVDIM)
if (eval_flags & (DERIVATIVES | PHYSICAL_DERIVATIVES))
{
if (eval_flags & VALUES)
{
TensorValues<QVectorLayout::byVDIM>(ne, vdim, maps, e_vec, q_val);
}
if (eval_flags & DERIVATIVES)
{
TensorDerivatives<QVectorLayout::byVDIM>(
ne, vdim, maps, e_vec, q_der);
}
if (eval_flags & PHYSICAL_DERIVATIVES)
{
TensorPhysDerivatives<QVectorLayout::byVDIM>(
ne, vdim, maps, *geom, e_vec, q_der);
}
const bool phys = (eval_flags & PHYSICAL_DERIVATIVES);
const real_t *J = phys ? geom->J.Read() : nullptr;
const int s_dim = phys ? sdim : dim;
GradKernels::Run(dim, q_layout, phys, vdim, nd, nq, ne,
maps.B.Read(), maps.G.Read(), J, e_vec.Read(),
q_der.Write(), s_dim, vdim, nd, nq);
}
if (eval_flags & DETERMINANTS)
{
TensorDeterminants(ne, vdim, maps, e_vec, q_det, d_buffer);
DetKernels::Run(dim, vdim, nd, nq, ne, maps.B.Read(),
maps.G.Read(), e_vec.Read(), q_det.Write(), nd,
nq, &d_buffer);
}
}
else // use_tensor_eval == false
{
const int nd = maps.ndof;
const int nq = maps.nqpt;
void (*mult)(const int NE,
const int vdim,
const QVectorLayout q_layout,
const GeometricFactors *geom,
const DofToQuad &maps,
const Vector &e_vec,
Vector &q_val,
Vector &q_der,
Vector &q_det,
const int eval_flags) = NULL;
if (dim == 1)
{
mult = &Eval1D;
}
else if (vdim == 1) // dim == 2 || dim == 3
{
if (dim == 2)
{
switch (100*nd + nq)
{
// Q0
case 101: mult = &Eval2D<1,1,1>; break;
case 104: mult = &Eval2D<1,1,4>; break;
// Q1
case 404: mult = &Eval2D<1,4,4>; break;
case 409: mult = &Eval2D<1,4,9>; break;
// Q2
case 909: mult = &Eval2D<1,9,9>; break;
case 916: mult = &Eval2D<1,9,16>; break;
// Q3
case 1616: mult = &Eval2D<1,16,16>; break;
case 1625: mult = &Eval2D<1,16,25>; break;
case 1636: mult = &Eval2D<1,16,36>; break;
// Q4
case 2525: mult = &Eval2D<1,25,25>; break;
case 2536: mult = &Eval2D<1,25,36>; break;
case 2549: mult = &Eval2D<1,25,49>; break;
case 2564: mult = &Eval2D<1,25,64>; break;
}
if (nq >= 100 || !mult)
{
mult = &Eval2D<1,0,0>;
}
}
else if (dim == 3)
{
switch (1000*nd + nq)
{
// Q0
case 1001: mult = &Eval3D<1,1,1>; break;
case 1008: mult = &Eval3D<1,1,8>; break;
// Q1
case 8008: mult = &Eval3D<1,8,8>; break;
case 8027: mult = &Eval3D<1,8,27>; break;
// Q2
case 27027: mult = &Eval3D<1,27,27>; break;
case 27064: mult = &Eval3D<1,27,64>; break;
// Q3
case 64064: mult = &Eval3D<1,64,64>; break;
case 64125: mult = &Eval3D<1,64,125>; break;
case 64216: mult = &Eval3D<1,64,216>; break;
// Q4
case 125125: mult = &Eval3D<1,125,125>; break;
case 125216: mult = &Eval3D<1,125,216>; break;
}
if (nq >= 1000 || !mult)
{
mult = &Eval3D<1,0,0>;
}
}
}
else if (vdim == 3 && dim == 2)
{
switch (100*nd + nq)
{
// Q0
case 101: mult = &Eval2D<3,1,1>; break;
case 104: mult = &Eval2D<3,1,4>; break;
// Q1
case 404: mult = &Eval2D<3,4,4>; break;
case 409: mult = &Eval2D<3,4,9>; break;
// Q2
case 904: mult = &Eval2D<3,9,4>; break;
case 909: mult = &Eval2D<3,9,9>; break;
case 916: mult = &Eval2D<3,9,16>; break;
case 925: mult = &Eval2D<3,9,25>; break;
// Q3
case 1616: mult = &Eval2D<3,16,16>; break;
case 1625: mult = &Eval2D<3,16,25>; break;
case 1636: mult = &Eval2D<3,16,36>; break;
// Q4
case 2525: mult = &Eval2D<3,25,25>; break;
case 2536: mult = &Eval2D<3,25,36>; break;
case 2549: mult = &Eval2D<3,25,49>; break;
case 2564: mult = &Eval2D<3,25,64>; break;
default: mult = &Eval2D<3,0,0>;
}
}
else if (vdim == dim)
{
if (dim == 2)
{
switch (100*nd + nq)
{
// Q1
case 404: mult = &Eval2D<2,4,4>; break;
case 409: mult = &Eval2D<2,4,9>; break;
// Q2
case 909: mult = &Eval2D<2,9,9>; break;
case 916: mult = &Eval2D<2,9,16>; break;
// Q3
case 1616: mult = &Eval2D<2,16,16>; break;
case 1625: mult = &Eval2D<2,16,25>; break;
case 1636: mult = &Eval2D<2,16,36>; break;
// Q4
case 2525: mult = &Eval2D<2,25,25>; break;
case 2536: mult = &Eval2D<2,25,36>; break;
case 2549: mult = &Eval2D<2,25,49>; break;
case 2564: mult = &Eval2D<2,25,64>; break;
}
if (nq >= 100 || !mult) { mult = &Eval2D<2,0,0>; }
}
else if (dim == 3)
{
switch (1000*nd + nq)
{
// Q1
case 8008: mult = &Eval3D<3,8,8>; break;
case 8027: mult = &Eval3D<3,8,27>; break;
// Q2
case 27027: mult = &Eval3D<3,27,27>; break;
case 27064: mult = &Eval3D<3,27,64>; break;
case 27125: mult = &Eval3D<3,27,125>; break;
// Q3
case 64064: mult = &Eval3D<3,64,64>; break;
case 64125: mult = &Eval3D<3,64,125>; break;
case 64216: mult = &Eval3D<3,64,216>; break;
// Q4
case 125125: mult = &Eval3D<3,125,125>; break;
case 125216: mult = &Eval3D<3,125,216>; break;
}
if (nq >= 1000 || !mult) { mult = &Eval3D<3,0,0>; }
}
}
if (mult)
{
mult(ne,vdim,q_layout,geom,maps,e_vec,q_val,q_der,q_det,eval_flags);
}
else { MFEM_ABORT("case not supported yet"); }
EvalKernels::Run(dim, vdim, maps.ndof, maps.nqpt, ne,vdim,q_layout,
geom, maps,e_vec, q_val,q_der,q_det,eval_flags);
}
}
@@ -731,4 +596,186 @@ void QuadratureInterpolator::Determinants(const Vector &e_vec,
Mult(e_vec, DETERMINANTS, empty, empty, q_det);
}
/// @cond Suppress_Doxygen_warnings
namespace
{
using EvalKernel = QuadratureInterpolator::EvalKernelType;
using TensorEvalKernel = QuadratureInterpolator::TensorEvalKernelType;
using GradKernel = QuadratureInterpolator::GradKernelType;
template <QVectorLayout Q_LAYOUT>
TensorEvalKernel FallbackTensorEvalKernel(int DIM)
{
if (DIM == 1) { return internal::quadrature_interpolator::Values1D<Q_LAYOUT>; }
else if (DIM == 2) { return internal::quadrature_interpolator::Values2D<Q_LAYOUT>; }
else if (DIM == 3) { return internal::quadrature_interpolator::Values3D<Q_LAYOUT>; }
else { MFEM_ABORT(""); }
}
template<QVectorLayout Q_LAYOUT, bool GRAD_PHYS>
GradKernel GetGradKernel(int DIM)
{
if (DIM == 1) { return internal::quadrature_interpolator::Derivatives1D<Q_LAYOUT, GRAD_PHYS>; }
else if (DIM == 2) { return internal::quadrature_interpolator::Derivatives2D<Q_LAYOUT, GRAD_PHYS>; }
else if (DIM == 3) { return internal::quadrature_interpolator::Derivatives3D<Q_LAYOUT, GRAD_PHYS>; }
else { MFEM_ABORT(""); }
}
template<QVectorLayout Q_LAYOUT>
GradKernel GetGradKernel(int DIM, bool GRAD_PHYS)
{
if (GRAD_PHYS) { return GetGradKernel<Q_LAYOUT, true>(DIM); }
else { return GetGradKernel<Q_LAYOUT, false>(DIM); }
}
} // namespace
template <int DIM, int VDIM, int ND, int NQ>
EvalKernel QuadratureInterpolator::EvalKernels::Kernel()
{
using namespace internal::quadrature_interpolator;
if (DIM == 1) { return Eval1D; }
else if (DIM == 2) { return Eval2D<VDIM,ND,NQ>; }
else if (DIM == 3) { return Eval3D<VDIM,ND,NQ>; }
else { MFEM_ABORT(""); }
}
template <int DIM>
EvalKernel GetEvalKernelVDimFallback(int VDIM)
{
using EvalKernels = QuadratureInterpolator::EvalKernels;
if (VDIM == 1) { return EvalKernels::Kernel<DIM,1,0,0>(); }
else if (VDIM == 2) { return EvalKernels::Kernel<DIM,2,0,0>(); }
else if (VDIM == 3) { return EvalKernels::Kernel<DIM,3,0,0>(); }
else { MFEM_ABORT(""); }
}
EvalKernel QuadratureInterpolator::EvalKernels::Fallback(
int DIM, int VDIM, int ND, int NQ)
{
if (DIM == 1) { return GetEvalKernelVDimFallback<1>(VDIM); }
else if (DIM == 2) { return GetEvalKernelVDimFallback<2>(VDIM); }
else if (DIM == 3) { return GetEvalKernelVDimFallback<3>(VDIM); }
else { MFEM_ABORT(""); }
}
TensorEvalKernel QuadratureInterpolator::TensorEvalKernels::Fallback(
int DIM, QVectorLayout Q_LAYOUT, int, int, int)
{
if (Q_LAYOUT == QVectorLayout::byNODES) { return FallbackTensorEvalKernel<QVectorLayout::byNODES>(DIM); }
else { return FallbackTensorEvalKernel<QVectorLayout::byVDIM>(DIM); }
}
GradKernel QuadratureInterpolator::GradKernels::Fallback(
int DIM, QVectorLayout Q_LAYOUT, bool GRAD_PHYS, int, int, int)
{
if (Q_LAYOUT == QVectorLayout::byNODES) { return GetGradKernel<QVectorLayout::byNODES>(DIM, GRAD_PHYS); }
else { return GetGradKernel<QVectorLayout::byVDIM>(DIM, GRAD_PHYS); }
}
/// @endcond
namespace internal
{
namespace quadrature_interpolator
{
void InitEvalKernels()
{
using k = QuadratureInterpolator::EvalKernels;
// 2D, VDIM = 1
k::Specialization<2,1,1,1>::Add();
k::Specialization<2,1,1,4>::Add();
// Q1
k::Specialization<2,1,4,4>::Add();
k::Specialization<2,1,4,9>::Add();
// Q2
k::Specialization<2,1,9,9>::Add();
k::Specialization<2,1,9,16>::Add();
// Q3
k::Specialization<2,1,16,16>::Add();
k::Specialization<2,1,16,25>::Add();
k::Specialization<2,1,16,36>::Add();
// Q4
k::Specialization<2,1,25,25>::Add();
k::Specialization<2,1,25,36>::Add();
k::Specialization<2,1,25,49>::Add();
k::Specialization<2,1,25,64>::Add();
// 3D, VDIM = 1
// Q0
k::Specialization<3,1,1,1>::Add();
k::Specialization<3,1,1,8>::Add();
// Q1
k::Specialization<3,1,8,8>::Add();
k::Specialization<3,1,8,27>::Add();
// Q2
k::Specialization<3,1,27,27>::Add();
k::Specialization<3,1,27,64>::Add();
// Q3
k::Specialization<3,1,64,64>::Add();
k::Specialization<3,1,64,125>::Add();
k::Specialization<3,1,64,216>::Add();
// Q4
k::Specialization<3,1,125,125>::Add();
k::Specialization<3,1,125,216>::Add();
// 2D, VDIM = 3
// Q0
k::Specialization<2,3,1,1>::Add();
k::Specialization<2,3,1,4>::Add();
// Q1
k::Specialization<2,3,4,4>::Add();
k::Specialization<2,3,4,9>::Add();
// Q2
k::Specialization<2,3,9,4>::Add();
k::Specialization<2,3,9,9>::Add();
k::Specialization<2,3,9,16>::Add();
k::Specialization<2,3,9,25>::Add();
// Q3
k::Specialization<2,3,16,16>::Add();
k::Specialization<2,3,16,25>::Add();
k::Specialization<2,3,16,36>::Add();
// Q4
k::Specialization<2,3,25,25>::Add();
k::Specialization<2,3,25,36>::Add();
k::Specialization<2,3,25,49>::Add();
k::Specialization<2,3,25,64>::Add();
// 2D, VDIM = 2
// Q1
k::Specialization<2,2,4,4>::Add();
k::Specialization<2,2,4,9>::Add();
// Q2
k::Specialization<2,2,9,9>::Add();
k::Specialization<2,2,9,16>::Add();
// Q3
k::Specialization<2,2,16,16>::Add();
k::Specialization<2,2,16,25>::Add();
k::Specialization<2,2,16,36>::Add();
// Q4
k::Specialization<2,2,25,25>::Add();
k::Specialization<2,2,25,36>::Add();
k::Specialization<2,2,25,49>::Add();
k::Specialization<2,2,25,64>::Add();
// 3D, VDIM = 3
// Q1
k::Specialization<3,3,8,8>::Add();
k::Specialization<3,3,8,27>::Add();
// Q2
k::Specialization<3,3,27,27>::Add();
k::Specialization<3,3,27,64>::Add();
k::Specialization<3,3,27,125>::Add();
// Q3
k::Specialization<3,3,64,64>::Add();
k::Specialization<3,3,64,125>::Add();
k::Specialization<3,3,64,216>::Add();
// Q4
k::Specialization<3,3,125,125>::Add();
k::Specialization<3,3,125,216>::Add();
}
} // namespace quadrature_Interpolator
} // namespace internal
} // namespace mfem
+24
View File
@@ -13,6 +13,7 @@
#define MFEM_QUADINTERP
#include "fespace.hpp"
#include "kernel_dispatch.hpp"
namespace mfem
{
@@ -130,6 +131,29 @@ public:
/// Perform the transpose operation of Mult(). (TODO)
void MultTranspose(unsigned eval_flags, const Vector &q_val,
const Vector &q_der, Vector &e_vec) const;
using TensorEvalKernelType = void(*)(const int, const real_t *, const real_t *,
real_t *, const int, const int, const int);
using GradKernelType = void(*)(const int, const real_t *, const real_t *,
const real_t *, const real_t *, real_t *,
const int, const int, const int, const int);
using DetKernelType = void(*)(const int NE, const real_t *, const real_t *,
const real_t *, real_t *, const int, const int,
Vector *);
using EvalKernelType = void(*)(const int, const int, const QVectorLayout,
const GeometricFactors *, const DofToQuad &,
const Vector &, Vector &, Vector &, Vector &,
const int);
MFEM_REGISTER_KERNELS(TensorEvalKernels, TensorEvalKernelType,
(int, QVectorLayout, int, int, int), (int));
MFEM_REGISTER_KERNELS(GradKernels, GradKernelType,
(int, QVectorLayout, bool, int, int, int), (int));
MFEM_REGISTER_KERNELS(DetKernels, DetKernelType, (int, int, int, int));
MFEM_REGISTER_KERNELS(EvalKernels, EvalKernelType, (int, int, int, int));
static struct Kernels { Kernels(); } kernels;
};
}
+4 -2
View File
@@ -855,7 +855,8 @@ void ConformingFaceRestriction::SetFaceDofsScatterIndices(
"This method should not be used on nonconforming coarse faces.");
MFEM_ASSERT(face.element[0].orientation==0,
"FaceRestriction used on degenerated mesh.");
MFEM_CONTRACT_VAR(f_ordering); // not supported yet
MFEM_VERIFY(f_ordering == ElementDofOrdering::LEXICOGRAPHIC,
"NATIVE ordering is not supported yet");
fes.GetFE(0)->GetFaceMap(face.element[0].local_face_id, face_map);
@@ -883,7 +884,8 @@ void ConformingFaceRestriction::SetFaceDofsGatherIndices(
{
MFEM_ASSERT(!(face.IsNonconformingCoarse()),
"This method should not be used on nonconforming coarse faces.");
MFEM_CONTRACT_VAR(f_ordering); // not supported yet
MFEM_VERIFY(f_ordering == ElementDofOrdering::LEXICOGRAPHIC,
"NATIVE ordering is not supported yet");
fes.GetFE(0)->GetFaceMap(face.element[0].local_face_id, face_map);
+2
View File
@@ -1233,6 +1233,8 @@ void PRefinementTransferOperator::Mult(const Vector& x, Vector& y) const
int vdim = lFESpace.GetVDim();
y = 0.0;
for (int i = 0; i < mesh->GetNE(); i++)
{
DofTransformation * doftrans_h = hFESpace.GetElementDofs(i, h_dofs);
+2 -2
View File
@@ -63,9 +63,9 @@
#define MFEM_FOREACH_THREAD(i,k,N) for(int i=0; i<N; i++)
#endif
// 'double' atomicAdd implementation for previous versions of CUDA
// 'double' and 'float' atomicAdd implementation for previous versions of CUDA
#if defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__) && __CUDA_ARCH__ < 600
MFEM_DEVICE inline real_t atomicAdd(real_t *add, real_t val)
MFEM_DEVICE inline mfem::real_t atomicAdd(mfem::real_t *add, mfem::real_t val)
{
unsigned long long int *ptr = (unsigned long long int *) add;
unsigned long long int old = *ptr, reg;
+72
View File
@@ -37,6 +37,78 @@ Table::Table(const Table &table)
}
}
Table::Table(const Table &table1,
const Table &table2, int offset)
{
MFEM_ASSERT(table1.size == table2.size,
"Tables have different sizes can not merge.");
size = table1.size;
const int nnz = table1.I[size] + table2.I[size];
I.New(size+1, table1.I.GetMemoryType());
J.New(nnz, table1.J.GetMemoryType());
I[0] = 0;
Array<int> row;
for (int i = 0; i < size; i++)
{
I[i+1] = I[i];
table1.GetRow(i, row);
for (int r = 0; r < row.Size(); r++, I[i+1] ++)
{
J[ I[i+1] ] = row[r];
}
table2.GetRow(i, row);
for (int r = 0; r < row.Size(); r++, I[i+1] ++)
{
J[ I[i+1] ] = (row[r] < 0) ? row[r] - offset : row[r] + offset;
}
}
}
Table::Table(const Table &table1,
const Table &table2, int offset2,
const Table &table3, int offset3)
{
MFEM_ASSERT(table1.size == table2.size,
"Tables have different sizes can not merge.");
MFEM_ASSERT(table1.size == table3.size,
"Tables have different sizes can not merge.");
size = table1.size;
const int nnz = table1.I[size] + table2.I[size] + table3.I[size];
I.New(size+1, table1.I.GetMemoryType());
J.New(nnz, table1.J.GetMemoryType());
I[0] = 0;
Array<int> row;
for (int i = 0; i < size; i++)
{
I[i+1] = I[i];
table1.GetRow(i, row);
for (int r = 0; r < row.Size(); r++, I[i+1] ++)
{
J[ I[i+1] ] = row[r];
}
table2.GetRow(i, row);
for (int r = 0; r < row.Size(); r++, I[i+1] ++)
{
J[ I[i+1] ] = (row[r] < 0) ? row[r] - offset2 : row[r] + offset2;
}
table3.GetRow(i, row);
for (int r = 0; r < row.Size(); r++, I[i+1] ++)
{
J[ I[i+1] ] = (row[r] < 0) ? row[r] - offset3 : row[r] + offset3;
}
}
}
Table& Table::operator=(const Table &rhs)
{
Clear();
+8
View File
@@ -58,6 +58,14 @@ public:
/// Copy constructor
Table(const Table &);
/** Merge constructors
This is used to combine two or three tables into one table.*/
Table(const Table &table1,
const Table &table2, int offset2);
Table(const Table &table1,
const Table &table2, int offset2,
const Table &table3, int offset3);
/// Assignment operator: deep copy
Table& operator=(const Table &rhs);
+1
View File
@@ -44,6 +44,7 @@ list(APPEND HDRS
handle.hpp
invariants.hpp
kernels.hpp
lapack.hpp
linalg.hpp
matrix.hpp
ode.hpp
+20 -138
View File
@@ -10,60 +10,9 @@
// CONTRIBUTING.md for details.
#include "complex_densemat.hpp"
#include "lapack.hpp"
#include <complex>
#ifdef MFEM_USE_LAPACK
#ifdef MFEM_USE_SINGLE
extern "C" void
cgetrf_(int *, int *, std::complex<float> *, int *, int *, int *);
extern "C" void
cgetrs_(char *, int *, int *, std::complex<float> *, int *, int *,
std::complex<float> *, int *, int *);
extern "C" void
cgetri_(int *, std::complex<float> *, int *, int *,
std::complex<float> *, int *, int *);
extern "C" void
ctrsm_(char *, char *, char *, char *, int *, int *, std::complex<float> *,
std::complex<float> *, int *, std::complex<float> *, int *);
extern "C" void
cpotrf_(char *, int *, std::complex<float> *, int *, int *);
extern "C" void
ctrtrs_(char *, char*, char *, int *, int *, std::complex<float> *, int *,
std::complex<float> *, int *, int *);
extern "C" void
cpotri_(char *, int *, std::complex<float> *, int*, int *);
extern "C" void
cpotrs_(char *, int *, int *, std::complex<float> *, int *,
std::complex<float> *, int *, int *);
#elif defined MFEM_USE_DOUBLE
extern "C" void
zgetrf_(int *, int *, std::complex<double> *, int *, int *, int *);
extern "C" void
zgetrs_(char *, int *, int *, std::complex<double> *, int *, int *,
std::complex<double> *, int *, int *);
extern "C" void
zgetri_(int *, std::complex<double> *, int *, int *,
std::complex<double> *, int *, int *);
extern "C" void
ztrsm_(char *, char *, char *, char *, int *, int *, std::complex<double> *,
std::complex<double> *, int *, std::complex<double> *, int *);
extern "C" void
zpotrf_(char *, int *, std::complex<double> *, int *, int *);
extern "C" void
ztrtrs_(char *, char*, char *, int *, int *, std::complex<double> *, int *,
std::complex<double> *, int *, int *);
extern "C" void
zpotri_(char *, int *, std::complex<double> *, int*, int *);
extern "C" void
zpotrs_(char *, int *, int *, std::complex<double> *, int *,
std::complex<double> *, int *, int *);
#endif
#endif
namespace mfem
{
@@ -175,35 +124,17 @@ ComplexDenseMatrix * ComplexDenseMatrix::ComputeInverse()
std::complex<real_t> qwork, *work;
int info;
#ifdef MFEM_USE_SINGLE
cgetrf_(&w, &w, data, &w, ipiv, &info);
#elif defined MFEM_USE_DOUBLE
zgetrf_(&w, &w, data, &w, ipiv, &info);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_COMPLEX(getrf_)(&w, &w, data, &w, ipiv, &info);
if (info)
{
mfem_error("DenseMatrix::Invert() : Error in ZGETRF");
}
#ifdef MFEM_USE_SINGLE
cgetri_(&w, data, &w, ipiv, &qwork, &lwork, &info);
#elif defined MFEM_USE_DOUBLE
zgetri_(&w, data, &w, ipiv, &qwork, &lwork, &info);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_COMPLEX(getri_)(&w, data, &w, ipiv, &qwork, &lwork, &info);
lwork = (int) qwork.real();
work = new std::complex<real_t>[lwork];
#ifdef MFEM_USE_SINGLE
cgetri_(&w, data, &w, ipiv, work, &lwork, &info);
#elif defined MFEM_USE_DOUBLE
zgetri_(&w, data, &w, ipiv, work, &lwork, &info);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_COMPLEX(getri_)(&w, data, &w, ipiv, work, &lwork, &info);
if (info)
{
mfem_error("DenseMatrix::Invert() : Error in ZGETRI");
@@ -493,11 +424,7 @@ bool ComplexLUFactors::Factor(int m, real_t TOL)
#ifdef MFEM_USE_LAPACK
int info = 0;
MFEM_VERIFY(data, "Matrix data not set");
#ifdef MFEM_USE_SINGLE
if (m) { cgetrf_(&m, &m, data, &m, ipiv, &info); }
#elif defined MFEM_USE_DOUBLE
if (m) { zgetrf_(&m, &m, data, &m, ipiv, &info); }
#endif
if (m) { MFEM_LAPACK_COMPLEX(getrf_)(&m, &m, data, &m, ipiv, &info); }
return info == 0;
#else
// compiling without LAPACK
@@ -659,13 +586,10 @@ void ComplexLUFactors::Solve(int m, int n, real_t *X_r, real_t * X_i) const
std::complex<real_t> * x = ComplexFactors::RealToComplex(m*n,X_r,X_i);
char trans = 'N';
int info = 0;
#ifdef MFEM_USE_SINGLE
if (m > 0 && n > 0) { cgetrs_(&trans, &m, &n, data, &m, ipiv, x, &m, &info); }
#elif defined MFEM_USE_DOUBLE
if (m > 0 && n > 0) { zgetrs_(&trans, &m, &n, data, &m, ipiv, x, &m, &info); }
#else
MFEM_ABORT("Floating point type undefined");
#endif
if (m > 0 && n > 0)
{
MFEM_LAPACK_COMPLEX(getrs_)(&trans, &m, &n, data, &m, ipiv, x, &m, &info);
}
MFEM_VERIFY(!info, "LAPACK: error in ZGETRS");
ComplexFactors::ComplexToReal(m*n,x,X_r,X_i);
delete [] x;
@@ -685,15 +609,8 @@ void ComplexLUFactors::RightSolve(int m, int n, real_t *X_r, real_t * X_i) const
if (m > 0 && n > 0)
{
std::complex<real_t> alpha(1.0,0.0);
#ifdef MFEM_USE_SINGLE
ctrsm_(&side,&u_ch,&n_ch,&n_ch,&n,&m,&alpha,data,&m,X,&n);
ctrsm_(&side,&l_ch,&n_ch,&u_ch,&n,&m,&alpha,data,&m,X,&n);
#elif defined MFEM_USE_DOUBLE
ztrsm_(&side,&u_ch,&n_ch,&n_ch,&n,&m,&alpha,data,&m,X,&n);
ztrsm_(&side,&l_ch,&n_ch,&u_ch,&n,&m,&alpha,data,&m,X,&n);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_COMPLEX(trsm_)(&side,&u_ch,&n_ch,&n_ch,&n,&m,&alpha,data,&m,X,&n);
MFEM_LAPACK_COMPLEX(trsm_)(&side,&l_ch,&n_ch,&u_ch,&n,&m,&alpha,data,&m,X,&n);
}
#else
// compiling without LAPACK
@@ -815,13 +732,7 @@ bool ComplexCholeskyFactors::Factor(int m, real_t TOL)
int info = 0;
char uplo = 'L';
MFEM_VERIFY(data, "Matrix data not set");
#ifdef MFEM_USE_SINGLE
if (m) {cpotrf_(&uplo, &m, data, &m, &info);}
#elif defined MFEM_USE_DOUBLE
if (m) {zpotrf_(&uplo, &m, data, &m, &info);}
#else
MFEM_ABORT("Floating point type undefined");
#endif
if (m) { MFEM_LAPACK_COMPLEX(potrf_)(&uplo, &m, data, &m, &info); }
return info == 0;
#else
// CholeskyCrout algorithm
@@ -921,13 +832,8 @@ void ComplexCholeskyFactors::LSolve(int m, int n, real_t * X_r,
char diag = 'N';
int info = 0;
#ifdef MFEM_USE_SINGLE
ctrtrs_(&uplo, &trans, &diag, &m, &n, data, &m, x, &m, &info);
#elif defined MFEM_USE_DOUBLE
ztrtrs_(&uplo, &trans, &diag, &m, &n, data, &m, x, &m, &info);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_COMPLEX(trtrs_)(&uplo, &trans, &diag, &m, &n, data, &m, x, &m,
&info);
MFEM_VERIFY(!info, "ComplexCholeskyFactors:LSolve:: info");
#else
for (int k = 0; k < n; k++)
@@ -960,13 +866,8 @@ void ComplexCholeskyFactors::USolve(int m, int n, real_t * X_r,
char diag = 'N';
int info = 0;
#ifdef MFEM_USE_SINGLE
ctrtrs_(&uplo, &trans, &diag, &m, &n, data, &m, x, &m, &info);
#elif defined MFEM_USE_DOUBLE
ztrtrs_(&uplo, &trans, &diag, &m, &n, data, &m, x, &m, &info);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_COMPLEX(trtrs_)(&uplo, &trans, &diag, &m, &n, data, &m, x, &m,
&info);
MFEM_VERIFY(!info, "ComplexCholeskyFactors:USolve:: info");
#else
// X <- L^{-t} X
@@ -994,13 +895,7 @@ void ComplexCholeskyFactors::Solve(int m, int n, real_t * X_r,
char uplo = 'L';
int info = 0;
std::complex<real_t> *x = ComplexFactors::RealToComplex(m*n,X_r,X_i);
#ifdef MFEM_USE_SINGLE
cpotrs_(&uplo, &m, &n, data, &m, x, &m, &info);
#elif defined MFEM_USE_DOUBLE
zpotrs_(&uplo, &m, &n, data, &m, x, &m, &info);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_COMPLEX(potrs_)(&uplo, &m, &n, data, &m, x, &m, &info);
MFEM_VERIFY(!info, "ComplexCholeskyFactors:Solve:: info");
ComplexFactors::ComplexToReal(m*n,x,X_r,X_i);
delete x;
@@ -1026,15 +921,8 @@ void ComplexCholeskyFactors::RightSolve(int m, int n, real_t * X_r,
std::complex<real_t> alpha(1.0,0.0);
if (m > 0 && n > 0)
{
#ifdef MFEM_USE_SINGLE
ctrsm_(&side,&uplo,&transt,&diag,&n,&m,&alpha,data,&m,x,&n);
ctrsm_(&side,&uplo,&trans,&diag,&n,&m,&alpha,data,&m,x,&n);
#elif defined MFEM_USE_DOUBLE
ztrsm_(&side,&uplo,&transt,&diag,&n,&m,&alpha,data,&m,x,&n);
ztrsm_(&side,&uplo,&trans,&diag,&n,&m,&alpha,data,&m,x,&n);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_COMPLEX(trsm_)(&side,&uplo,&transt,&diag,&n,&m,&alpha,data,&m,x,&n);
MFEM_LAPACK_COMPLEX(trsm_)(&side,&uplo,&trans,&diag,&n,&m,&alpha,data,&m,x,&n);
}
#else
// X <- X L^{-H}
@@ -1085,13 +973,7 @@ void ComplexCholeskyFactors::GetInverseMatrix(int m, real_t * X_r,
}
char uplo = 'L';
int info = 0;
#ifdef MFEM_USE_SINGLE
cpotri_(&uplo, &m, X, &m, &info);
#elif defined MFEM_USE_DOUBLE
zpotri_(&uplo, &m, X, &m, &info);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_COMPLEX(potri_)(&uplo, &m, X, &m, &info);
MFEM_VERIFY(!info, "ComplexCholeskyFactors:GetInverseMatrix:: info");
// fill in the upper triangular part
for (int i = 0; i<m; i++)
+69 -355
View File
@@ -17,6 +17,7 @@
#include "vector.hpp"
#include "matrix.hpp"
#include "densemat.hpp"
#include "lapack.hpp"
#include "../general/forall.hpp"
#include "../general/table.hpp"
#include "../general/globals.hpp"
@@ -32,103 +33,6 @@
#endif
#ifdef MFEM_USE_LAPACK
#ifdef MFEM_USE_SINGLE
extern "C" void
sgemm_(char *, char *, int *, int *, int *, float *, float *,
int *, float *, int *, float *, float *, int *);
extern "C" void
sgetrf_(int *, int *, float *, int *, int *, int *);
extern "C" void
sgetrs_(char *, int *, int *, float *, int *, int *, float *, int *, int *);
extern "C" void
sgetri_(int *N, float *A, int *LDA, int *IPIV, float *WORK,
int *LWORK, int *INFO);
extern "C" void
ssyevr_(char *JOBZ, char *RANGE, char *UPLO, int *N, float *A, int *LDA,
float *VL, float *VU, int *IL, int *IU, float *ABSTOL, int *M,
float *W, float *Z, int *LDZ, int *ISUPPZ, float *WORK, int *LWORK,
int *IWORK, int *LIWORK, int *INFO);
extern "C" void
ssyev_(char *JOBZ, char *UPLO, int *N, float *A, int *LDA, float *W,
float *WORK, int *LWORK, int *INFO);
extern "C" void
ssygv_ (int *ITYPE, char *JOBZ, char *UPLO, int * N, float *A, int *LDA,
float *B, int *LDB, float *W, float *WORK, int *LWORK, int *INFO);
extern "C" void
sgesvd_(char *JOBU, char *JOBVT, int *M, int *N, float *A, int *LDA,
float *S, float *U, int *LDU, float *VT, int *LDVT, float *WORK,
int *LWORK, int *INFO);
extern "C" void
strsm_(char *side, char *uplo, char *transa, char *diag, int *m, int *n,
float *alpha, float *a, int *lda, float *b, int *ldb);
extern "C" void
sggev_(char *jobvl, char *jobvr, int *n, float *a, int *lda, float *B,
int *ldb, float *alphar, float *alphai, float *beta, float *vl,
int * ldvl, float * vr, int * ldvr, float * work, int * lwork, int* info);
// Cholesky factorizations/solves
extern "C" void
spotrf_(char *, int *, float *, int *, int *);
// Solve
extern "C" void
spotrs_(char *, int *, int *, float *, int *, float *, int *, int *);
// Triangular Solves
extern "C" void
strtrs_(char *, char*, char *, int *, int *, float *, int *, float *, int *,
int *);
extern "C" void
spotri_(char *, int *, float *, int*, int *);
#elif defined MFEM_USE_DOUBLE
extern "C" void
dgemm_(char *, char *, int *, int *, int *, double *, double *,
int *, double *, int *, double *, double *, int *);
extern "C" void
dgetrf_(int *, int *, double *, int *, int *, int *);
extern "C" void
dgetrs_(char *, int *, int *, double *, int *, int *, double *, int *, int *);
extern "C" void
dgetri_(int *N, double *A, int *LDA, int *IPIV, double *WORK,
int *LWORK, int *INFO);
extern "C" void
dsyevr_(char *JOBZ, char *RANGE, char *UPLO, int *N, double *A, int *LDA,
double *VL, double *VU, int *IL, int *IU, double *ABSTOL, int *M,
double *W, double *Z, int *LDZ, int *ISUPPZ, double *WORK, int *LWORK,
int *IWORK, int *LIWORK, int *INFO);
extern "C" void
dsyev_(char *JOBZ, char *UPLO, int *N, double *A, int *LDA, double *W,
double *WORK, int *LWORK, int *INFO);
extern "C" void
dsygv_ (int *ITYPE, char *JOBZ, char *UPLO, int * N, double *A, int *LDA,
double *B, int *LDB, double *W, double *WORK, int *LWORK, int *INFO);
extern "C" void
dgesvd_(char *JOBU, char *JOBVT, int *M, int *N, double *A, int *LDA,
double *S, double *U, int *LDU, double *VT, int *LDVT, double *WORK,
int *LWORK, int *INFO);
extern "C" void
dtrsm_(char *side, char *uplo, char *transa, char *diag, int *m, int *n,
double *alpha, double *a, int *lda, double *b, int *ldb);
extern "C" void
dggev_(char *jobvl, char *jobvr, int *n, double *a, int *lda, double *B,
int *ldb, double *alphar, double *alphai, double *beta, double *vl,
int * ldvl, double * vr, int * ldvr, double * work, int * lwork, int* info);
// Cholesky factorizations/solves
extern "C" void
dpotrf_(char *, int *, double *, int *, int *);
// Solve
extern "C" void
dpotrs_(char *, int *, int *, double *, int *, double *, int *, int *);
// Triangular Solves
extern "C" void
dtrtrs_(char *, char*, char *, int *, int *, double *, int *, double *, int *,
int *);
extern "C" void
dpotri_(char *, int *, double *, int*, int *);
#endif
#endif
namespace mfem
{
@@ -801,36 +705,19 @@ void DenseMatrix::Invert()
real_t qwork, *work;
int info;
#ifdef MFEM_USE_SINGLE
sgetrf_(&width, &width, data, &width, ipiv, &info);
#elif defined MFEM_USE_DOUBLE
dgetrf_(&width, &width, data, &width, ipiv, &info);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_PREFIX(getrf_)(&width, &width, data, &width, ipiv, &info);
if (info)
{
mfem_error("DenseMatrix::Invert() : Error in DGETRF");
}
#ifdef MFEM_USE_SINGLE
sgetri_(&width, data, &width, ipiv, &qwork, &lwork, &info);
MFEM_LAPACK_PREFIX(getri_)(&width, data, &width, ipiv, &qwork, &lwork, &info);
lwork = (int) qwork;
work = new float[lwork];
work = new real_t[lwork];
sgetri_(&width, data, &width, ipiv, work, &lwork, &info);
#elif defined MFEM_USE_DOUBLE
dgetri_(&width, data, &width, ipiv, &qwork, &lwork, &info);
lwork = (int) qwork;
work = new double[lwork];
dgetri_(&width, data, &width, ipiv, work, &lwork, &info);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_PREFIX(getri_)(&width, data, &width, ipiv, work, &lwork, &info);
if (info)
{
@@ -1066,15 +953,9 @@ void dsyevr_Eigensystem(DenseMatrix &a, Vector &ev, DenseMatrix *evect)
A[i] = data[i];
}
#ifdef MFEM_USE_SINGLE
ssyevr_( &JOBZ, &RANGE, &UPLO, &N, A, &LDA, &VL, &VU, &IL, &IU,
#elif defined MFEM_USE_DOUBLE
dsyevr_( &JOBZ, &RANGE, &UPLO, &N, A, &LDA, &VL, &VU, &IL, &IU,
#else
MFEM_ABORT("Floating point type undefined");
#endif
&ABSTOL, &M, W, Z, &LDZ, ISUPPZ, &QWORK, &LWORK,
&QIWORK, &LIWORK, &INFO );
MFEM_LAPACK_PREFIX(syevr_)(&JOBZ, &RANGE, &UPLO, &N, A, &LDA, &VL, &VU, &IL,
&IU, &ABSTOL, &M, W, Z, &LDZ, ISUPPZ, &QWORK,
&LWORK, &QIWORK, &LIWORK, &INFO);
LWORK = (int) QWORK;
LIWORK = QIWORK;
@@ -1082,15 +963,9 @@ void dsyevr_Eigensystem(DenseMatrix &a, Vector &ev, DenseMatrix *evect)
WORK = new real_t[LWORK];
IWORK = new int[LIWORK];
#ifdef MFEM_USE_SINGLE
ssyevr_( &JOBZ, &RANGE, &UPLO, &N, A, &LDA, &VL, &VU, &IL, &IU,
#elif defined MFEM_USE_DOUBLE
dsyevr_( &JOBZ, &RANGE, &UPLO, &N, A, &LDA, &VL, &VU, &IL, &IU,
#else
MFEM_ABORT("Floating point type undefined");
#endif
&ABSTOL, &M, W, Z, &LDZ, ISUPPZ, WORK, &LWORK,
IWORK, &LIWORK, &INFO );
MFEM_LAPACK_PREFIX(syevr_)(&JOBZ, &RANGE, &UPLO, &N, A, &LDA, &VL, &VU, &IL,
&IU, &ABSTOL, &M, W, Z, &LDZ, ISUPPZ, WORK,
&LWORK, IWORK, &LIWORK, &INFO);
if (INFO != 0)
{
@@ -1230,24 +1105,12 @@ void dsyev_Eigensystem(DenseMatrix &a, Vector &ev, DenseMatrix *evect)
A[i] = data[i];
}
#ifdef MFEM_USE_SINGLE
ssyev_(&JOBZ, &UPLO, &N, A, &LDA, W, &QWORK, &LWORK, &INFO);
#elif defined MFEM_USE_DOUBLE
dsyev_(&JOBZ, &UPLO, &N, A, &LDA, W, &QWORK, &LWORK, &INFO);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_PREFIX(syev_)(&JOBZ, &UPLO, &N, A, &LDA, W, &QWORK, &LWORK, &INFO);
LWORK = (int) QWORK;
WORK = new real_t[LWORK];
#ifdef MFEM_USE_SINGLE
ssyev_(&JOBZ, &UPLO, &N, A, &LDA, W, WORK, &LWORK, &INFO);
#elif defined MFEM_USE_DOUBLE
dsyev_(&JOBZ, &UPLO, &N, A, &LDA, W, WORK, &LWORK, &INFO);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_PREFIX(syev_)(&JOBZ, &UPLO, &N, A, &LDA, W, WORK, &LWORK, &INFO);
if (INFO != 0)
{
@@ -1322,24 +1185,14 @@ void dsygv_Eigensystem(DenseMatrix &a, DenseMatrix &b, Vector &ev,
B[i] = b_data[i];
}
#ifdef MFEM_USE_SINGLE
ssygv_(&ITYPE, &JOBZ, &UPLO, &N, A, &LDA, B, &LDB, W, &QWORK, &LWORK, &INFO);
#elif defined MFEM_USE_DOUBLE
dsygv_(&ITYPE, &JOBZ, &UPLO, &N, A, &LDA, B, &LDB, W, &QWORK, &LWORK, &INFO);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_PREFIX(sygv_)(&ITYPE, &JOBZ, &UPLO, &N, A, &LDA, B, &LDB, W,
&QWORK, &LWORK, &INFO);
LWORK = (int) QWORK;
WORK = new real_t[LWORK];
#ifdef MFEM_USE_SINGLE
ssygv_(&ITYPE, &JOBZ, &UPLO, &N, A, &LDA, B, &LDB, W, WORK, &LWORK, &INFO);
#elif defined MFEM_USE_DOUBLE
dsygv_(&ITYPE, &JOBZ, &UPLO, &N, A, &LDA, B, &LDB, W, WORK, &LWORK, &INFO);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_PREFIX(sygv_)(&ITYPE, &JOBZ, &UPLO, &N, A, &LDA, B, &LDB, W, WORK,
&LWORK, &INFO);
if (INFO != 0)
{
@@ -1391,26 +1244,14 @@ void DenseMatrix::SingularValues(Vector &sv) const
int info;
real_t qwork;
#ifdef MFEM_USE_SINGLE
sgesvd_(&jobu, &jobvt, &m, &n, a, &m,
#elif defined MFEM_USE_DOUBLE
dgesvd_(&jobu, &jobvt, &m, &n, a, &m,
#else
MFEM_ABORT("Floating point type undefined");
#endif
s, u, &m, vt, &n, &qwork, &lwork, &info);
MFEM_LAPACK_PREFIX(gesvd_)(&jobu, &jobvt, &m, &n, a, &m, s, u, &m, vt, &n,
&qwork, &lwork, &info);
lwork = (int) qwork;
work = new real_t[lwork];
#ifdef MFEM_USE_SINGLE
sgesvd_(&jobu, &jobvt, &m, &n, a, &m,
#elif defined MFEM_USE_DOUBLE
dgesvd_(&jobu, &jobvt, &m, &n, a, &m,
#else
MFEM_ABORT("Floating point type undefined");
#endif
s, u, &m, vt, &n, work, &lwork, &info);
MFEM_LAPACK_PREFIX(gesvd_)(&jobu, &jobvt, &m, &n, a, &m, s, u, &m, vt, &n,
work, &lwork, &info);
delete [] work;
if (info)
@@ -2573,14 +2414,8 @@ void Mult(const DenseMatrix &b, const DenseMatrix &c, DenseMatrix &a)
static real_t alpha = 1.0, beta = 0.0;
int m = b.Height(), n = c.Width(), k = b.Width();
#ifdef MFEM_USE_SINGLE
sgemm_(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
#elif defined MFEM_USE_DOUBLE
dgemm_(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
#else
MFEM_ABORT("Floating point type undefined");
#endif
c.Data(), &k, &beta, a.Data(), &m);
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
c.Data(), &k, &beta, a.Data(), &m);
#else
const int ah = a.Height();
const int aw = a.Width();
@@ -2603,14 +2438,8 @@ void AddMult_a(real_t alpha, const DenseMatrix &b, const DenseMatrix &c,
static real_t beta = 1.0;
int m = b.Height(), n = c.Width(), k = b.Width();
#ifdef MFEM_USE_SINGLE
sgemm_(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
#elif defined MFEM_USE_DOUBLE
dgemm_(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
#else
MFEM_ABORT("Floating point type undefined");
#endif
c.Data(), &k, &beta, a.Data(), &m);
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
c.Data(), &k, &beta, a.Data(), &m);
#else
const int ah = a.Height();
const int aw = a.Width();
@@ -2641,12 +2470,8 @@ void AddMult(const DenseMatrix &b, const DenseMatrix &c, DenseMatrix &a)
static real_t alpha = 1.0, beta = 1.0;
int m = b.Height(), n = c.Width(), k = b.Width();
#ifdef MFEM_USE_SINGLE
sgemm_(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
#elif defined MFEM_USE_DOUBLE
dgemm_(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
#endif
c.Data(), &k, &beta, a.Data(), &m);
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, b.Data(), &m,
c.Data(), &k, &beta, a.Data(), &m);
#else
const int ah = a.Height();
const int aw = a.Width();
@@ -2965,12 +2790,8 @@ void MultABt(const DenseMatrix &A, const DenseMatrix &B, DenseMatrix &ABt)
static real_t alpha = 1.0, beta = 0.0;
int m = A.Height(), n = B.Height(), k = A.Width();
#ifdef MFEM_USE_SINGLE
sgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
#elif defined MFEM_USE_DOUBLE
dgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
#endif
B.Data(), &n, &beta, ABt.Data(), &m);
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
B.Data(), &n, &beta, ABt.Data(), &m);
#elif 1
const int ah = A.Height();
const int bh = B.Height();
@@ -3074,12 +2895,8 @@ void AddMultABt(const DenseMatrix &A, const DenseMatrix &B, DenseMatrix &ABt)
static real_t alpha = 1.0, beta = 1.0;
int m = A.Height(), n = B.Height(), k = A.Width();
#ifdef MFEM_USE_SINGLE
sgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
#elif defined MFEM_USE_DOUBLE
dgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
#endif
B.Data(), &n, &beta, ABt.Data(), &m);
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
B.Data(), &n, &beta, ABt.Data(), &m);
#elif 1
const int ah = A.Height();
const int bh = B.Height();
@@ -3173,12 +2990,8 @@ void AddMult_a_ABt(real_t a, const DenseMatrix &A, const DenseMatrix &B,
static real_t beta = 1.0;
int m = A.Height(), n = B.Height(), k = A.Width();
#ifdef MFEM_USE_SINGLE
sgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
#elif defined MFEM_USE_DOUBLE
dgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
#endif
B.Data(), &n, &beta, ABt.Data(), &m);
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &m,
B.Data(), &n, &beta, ABt.Data(), &m);
#elif 1
const int ah = A.Height();
const int bh = B.Height();
@@ -3234,12 +3047,8 @@ void MultAtB(const DenseMatrix &A, const DenseMatrix &B, DenseMatrix &AtB)
static real_t alpha = 1.0, beta = 0.0;
int m = A.Width(), n = B.Width(), k = A.Height();
#ifdef MFEM_USE_SINGLE
sgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
#elif defined MFEM_USE_DOUBLE
dgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
#endif
B.Data(), &k, &beta, AtB.Data(), &m);
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
B.Data(), &k, &beta, AtB.Data(), &m);
#elif 1
const int ah = A.Height();
const int aw = A.Width();
@@ -3291,12 +3100,8 @@ void AddMultAtB(const DenseMatrix &A, const DenseMatrix &B,
static real_t alpha = 1.0, beta = 1.0;
int m = A.Width(), n = B.Width(), k = A.Height();
#ifdef MFEM_USE_SINGLE
sgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
#elif defined MFEM_USE_DOUBLE
dgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
#endif
B.Data(), &k, &beta, AtB.Data(), &m);
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
B.Data(), &k, &beta, AtB.Data(), &m);
#else
const int ah = A.Height();
const int aw = A.Width();
@@ -3335,12 +3140,8 @@ void AddMult_a_AtB(real_t a, const DenseMatrix &A, const DenseMatrix &B,
static real_t beta = 1.0;
int m = A.Width(), n = B.Width(), k = A.Height();
#ifdef MFEM_USE_SINGLE
sgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
#elif defined MFEM_USE_DOUBLE
dgemm_(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
#endif
B.Data(), &k, &beta, AtB.Data(), &m);
MFEM_LAPACK_PREFIX(gemm_)(&transa, &transb, &m, &n, &k, &alpha, A.Data(), &k,
B.Data(), &k, &beta, AtB.Data(), &m);
#else
const int ah = A.Height();
const int aw = A.Width();
@@ -3545,13 +3346,7 @@ bool LUFactors::Factor(int m, real_t TOL)
{
#ifdef MFEM_USE_LAPACK
int info = 0;
#ifdef MFEM_USE_SINGLE
if (m) { sgetrf_(&m, &m, data, &m, ipiv, &info); }
#elif defined MFEM_USE_DOUBLE
if (m) { dgetrf_(&m, &m, data, &m, ipiv, &info); }
#else
MFEM_ABORT("Floating point type undefined");
#endif
if (m) { MFEM_LAPACK_PREFIX(getrf_)(&m, &m, data, &m, ipiv, &info); }
return info == 0;
#else
// compiling without LAPACK
@@ -3703,13 +3498,10 @@ void LUFactors::Solve(int m, int n, real_t *X) const
#ifdef MFEM_USE_LAPACK
char trans = 'N';
int info = 0;
#ifdef MFEM_USE_SINGLE
if (m > 0 && n > 0) { sgetrs_(&trans, &m, &n, data, &m, ipiv, X, &m, &info); }
#elif defined MFEM_USE_DOUBLE
if (m > 0 && n > 0) { dgetrs_(&trans, &m, &n, data, &m, ipiv, X, &m, &info); }
#else
MFEM_ABORT("Floating point type undefined");
#endif
if (m > 0 && n > 0)
{
MFEM_LAPACK_PREFIX(getrs_)(&trans, &m, &n, data, &m, ipiv, X, &m, &info);
}
MFEM_VERIFY(!info, "LAPACK: error in DGETRS");
#else
// compiling without LAPACK
@@ -3726,15 +3518,8 @@ void LUFactors::RightSolve(int m, int n, real_t *X) const
real_t alpha = 1.0;
if (m > 0 && n > 0)
{
#ifdef MFEM_USE_SINGLE
strsm_(&side,&u_ch,&n_ch,&n_ch,&n,&m,&alpha,data,&m,X,&n);
strsm_(&side,&l_ch,&n_ch,&u_ch,&n,&m,&alpha,data,&m,X,&n);
#elif defined MFEM_USE_DOUBLE
dtrsm_(&side,&u_ch,&n_ch,&n_ch,&n,&m,&alpha,data,&m,X,&n);
dtrsm_(&side,&l_ch,&n_ch,&u_ch,&n,&m,&alpha,data,&m,X,&n);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_PREFIX(trsm_)(&side,&u_ch,&n_ch,&n_ch,&n,&m,&alpha,data,&m,X,&n);
MFEM_LAPACK_PREFIX(trsm_)(&side,&l_ch,&n_ch,&u_ch,&n,&m,&alpha,data,&m,X,&n);
}
#else
// compiling without LAPACK
@@ -3911,13 +3696,7 @@ bool CholeskyFactors::Factor(int m, real_t TOL)
int info = 0;
char uplo = 'L';
MFEM_VERIFY(data, "Matrix data not set");
#ifdef MFEM_USE_SINGLE
if (m) {spotrf_(&uplo, &m, data, &m, &info);}
#elif defined MFEM_USE_DOUBLE
if (m) {dpotrf_(&uplo, &m, data, &m, &info);}
#else
MFEM_ABORT("Floating point type undefined");
#endif
if (m) { MFEM_LAPACK_PREFIX(potrf_)(&uplo, &m, data, &m, &info); }
return info == 0;
#else
// CholeskyCrout algorithm
@@ -4009,13 +3788,8 @@ void CholeskyFactors::LSolve(int m, int n, real_t * X) const
char diag = 'N';
int info = 0;
#ifdef MFEM_USE_SINGLE
strtrs_(&uplo, &trans, &diag, &m, &n, data, &m, X, &m, &info);
#elif defined MFEM_USE_DOUBLE
dtrtrs_(&uplo, &trans, &diag, &m, &n, data, &m, X, &m, &info);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_PREFIX(trtrs_)(&uplo, &trans, &diag, &m, &n, data, &m, X, &m,
&info);
MFEM_VERIFY(!info, "CholeskyFactors:LSolve:: info");
#else
@@ -4045,13 +3819,8 @@ void CholeskyFactors::USolve(int m, int n, real_t * X) const
char diag = 'N';
int info = 0;
#ifdef MFEM_USE_SINGLE
strtrs_(&uplo, &trans, &diag, &m, &n, data, &m, X, &m, &info);
#elif defined MFEM_USE_DOUBLE
dtrtrs_(&uplo, &trans, &diag, &m, &n, data, &m, X, &m, &info);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_PREFIX(trtrs_)(&uplo, &trans, &diag, &m, &n, data, &m, X, &m,
&info);
MFEM_VERIFY(!info, "CholeskyFactors:USolve:: info");
#else
@@ -4077,13 +3846,7 @@ void CholeskyFactors::Solve(int m, int n, real_t * X) const
#ifdef MFEM_USE_LAPACK
char uplo = 'L';
int info = 0;
#ifdef MFEM_USE_SINGLE
spotrs_(&uplo, &m, &n, data, &m, X, &m, &info);
#elif defined MFEM_USE_DOUBLE
dpotrs_(&uplo, &m, &n, data, &m, X, &m, &info);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_PREFIX(potrs_)(&uplo, &m, &n, data, &m, X, &m, &info);
MFEM_VERIFY(!info, "CholeskyFactors:Solve:: info");
#else
@@ -4104,15 +3867,8 @@ void CholeskyFactors::RightSolve(int m, int n, real_t * X) const
real_t alpha = 1.0;
if (m > 0 && n > 0)
{
#ifdef MFEM_USE_SINGLE
strsm_(&side,&uplo,&transt,&diag,&n,&m,&alpha,data,&m,X,&n);
strsm_(&side,&uplo,&trans,&diag,&n,&m,&alpha,data,&m,X,&n);
#elif defined MFEM_USE_DOUBLE
dtrsm_(&side,&uplo,&transt,&diag,&n,&m,&alpha,data,&m,X,&n);
dtrsm_(&side,&uplo,&trans,&diag,&n,&m,&alpha,data,&m,X,&n);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_PREFIX(trsm_)(&side,&uplo,&transt,&diag,&n,&m,&alpha,data,&m,X,&n);
MFEM_LAPACK_PREFIX(trsm_)(&side,&uplo,&trans,&diag,&n,&m,&alpha,data,&m,X,&n);
}
#else
// X <- X L^{-t}
@@ -4160,13 +3916,7 @@ void CholeskyFactors::GetInverseMatrix(int m, real_t * X) const
}
char uplo = 'L';
int info = 0;
#ifdef MFEM_USE_SINGLE
spotri_(&uplo, &m, X, &m, &info);
#elif defined MFEM_USE_DOUBLE
dpotri_(&uplo, &m, X, &m, &info);
#else
MFEM_ABORT("Floating point type undefined");
#endif
MFEM_LAPACK_PREFIX(potri_)(&uplo, &m, X, &m, &info);
MFEM_VERIFY(!info, "CholeskyFactors:GetInverseMatrix:: info");
// fill in the upper triangular part
for (int i = 0; i<m; i++)
@@ -4350,14 +4100,8 @@ DenseMatrixEigensystem::DenseMatrixEigensystem(DenseMatrix &m)
uplo = 'U';
lwork = -1;
real_t qwork;
#ifdef MFEM_USE_SINGLE
ssyev_(&jobz, &uplo, &n, EVect.Data(), &n, EVal.GetData(),
#elif defined MFEM_USE_DOUBLE
dsyev_(&jobz, &uplo, &n, EVect.Data(), &n, EVal.GetData(),
#else
MFEM_ABORT("Floating point type undefined");
#endif
&qwork, &lwork, &info);
MFEM_LAPACK_PREFIX(syev_)(&jobz, &uplo, &n, EVect.Data(), &n, EVal.GetData(),
&qwork, &lwork, &info);
lwork = (int) qwork;
work = new real_t[lwork];
@@ -4385,14 +4129,8 @@ void DenseMatrixEigensystem::Eval()
#endif
EVect = mat;
#ifdef MFEM_USE_SINGLE
ssyev_(&jobz, &uplo, &n, EVect.Data(), &n, EVal.GetData(),
#elif defined MFEM_USE_DOUBLE
dsyev_(&jobz, &uplo, &n, EVect.Data(), &n, EVal.GetData(),
#else
MFEM_ABORT("Floating point type undefined");
#endif
work, &lwork, &info);
MFEM_LAPACK_PREFIX(syev_)(&jobz, &uplo, &n, EVect.Data(), &n, EVal.GetData(),
work, &lwork, &info);
if (info != 0)
{
@@ -4444,15 +4182,9 @@ DenseMatrixGeneralizedEigensystem::DenseMatrixGeneralizedEigensystem(
int nl = max(1,Vl.Height());
int nr = max(1,Vr.Height());
#ifdef MFEM_USE_SINGLE
sggev_(&jobvl,&jobvr,&n,A_copy.Data(),&n,B_copy.Data(),&n,alphar,
#elif defined MFEM_USE_DOUBLE
dggev_(&jobvl,&jobvr,&n,A_copy.Data(),&n,B_copy.Data(),&n,alphar,
#else
MFEM_ABORT("Floating point type undefined");
#endif
alphai, beta, Vl.Data(), &nl, Vr.Data(), &nr,
&qwork, &lwork, &info);
MFEM_LAPACK_PREFIX(ggev_)(&jobvl,&jobvr,&n,A_copy.Data(),&n,B_copy.Data(),&n,
alphar, alphai, beta, Vl.Data(), &nl, Vr.Data(),
&nr, &qwork, &lwork, &info);
lwork = (int) qwork;
work = new real_t[lwork];
@@ -4465,15 +4197,9 @@ void DenseMatrixGeneralizedEigensystem::Eval()
A_copy = A;
B_copy = B;
#ifdef MFEM_USE_SINGLE
sggev_(&jobvl,&jobvr,&n,A_copy.Data(),&n,B_copy.Data(),&n,alphar,
#elif defined MFEM_USE_DOUBLE
dggev_(&jobvl,&jobvr,&n,A_copy.Data(),&n,B_copy.Data(),&n,alphar,
#else
MFEM_ABORT("Floating point type undefined");
#endif
alphai, beta, Vl.Data(), &nl, Vr.Data(), &nr,
work, &lwork, &info);
MFEM_LAPACK_PREFIX(ggev_)(&jobvl,&jobvr,&n,A_copy.Data(),&n,B_copy.Data(),&n,
alphar, alphai, beta, Vl.Data(), &nl, Vr.Data(),
&nr, work, &lwork, &info);
if (info != 0)
{
mfem::err << "DenseMatrixGeneralizedEigensystem::Eval(): DGGEV error code: "
@@ -4554,14 +4280,8 @@ void DenseMatrixSVD::Init()
sv.SetSize(min(m, n));
real_t qwork;
lwork = -1;
#ifdef MFEM_USE_SINGLE
sgesvd_(&jobu, &jobvt, &m, &n, NULL, &m, sv.GetData(), NULL, &m,
#elif defined MFEM_USE_DOUBLE
dgesvd_(&jobu, &jobvt, &m, &n, NULL, &m, sv.GetData(), NULL, &m,
#else
MFEM_ABORT("Floating point type undefined");
#endif
NULL, &n, &qwork, &lwork, &info);
MFEM_LAPACK_PREFIX(gesvd_)(&jobu, &jobvt, &m, &n, NULL, &m, sv.GetData(),
NULL, &m, NULL, &n, &qwork, &lwork, &info);
lwork = (int) qwork;
work = new real_t[lwork];
}
@@ -4597,14 +4317,8 @@ void DenseMatrixSVD::Eval(DenseMatrix &M)
datavt = Vt.Data();
}
Mc = M;
#ifdef MFEM_USE_SINGLE
sgesvd_(&jobu, &jobvt, &m, &n, Mc.Data(), &m, sv.GetData(), datau, &m,
#elif defined MFEM_USE_DOUBLE
dgesvd_(&jobu, &jobvt, &m, &n, Mc.Data(), &m, sv.GetData(), datau, &m,
#else
MFEM_ABORT("Floating point type undefined");
#endif
datavt, &n, work, &lwork, &info);
MFEM_LAPACK_PREFIX(gesvd_)(&jobu, &jobvt, &m, &n, Mc.Data(), &m, sv.GetData(),
datau, &m, datavt, &n, work, &lwork, &info);
if (info)
{
+134
View File
@@ -0,0 +1,134 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_LAPACK_HPP
#define MFEM_LAPACK_HPP
#include "../config/config.hpp"
#ifdef MFEM_USE_LAPACK
#ifdef MFEM_USE_SINGLE
#define MFEM_LAPACK_PREFIX(stub) s##stub
#define MFEM_LAPACK_COMPLEX(stub) c##stub
#elif defined(MFEM_USE_DOUBLE)
#define MFEM_LAPACK_PREFIX(stub) d##stub
#define MFEM_LAPACK_COMPLEX(stub) z##stub
#endif
namespace mfem
{
extern "C" void
MFEM_LAPACK_PREFIX(gemm_)(char *, char *, int *, int *, int *, real_t *,
real_t *, int *, real_t *, int *, real_t *, real_t *,
int *);
extern "C" void
MFEM_LAPACK_PREFIX(getrf_)(int *, int *, real_t *, int *, int *, int *);
extern "C" void
MFEM_LAPACK_PREFIX(getrs_)(char *, int *, int *, real_t *, int *, int *,
real_t *, int *, int *);
extern "C" void
MFEM_LAPACK_PREFIX(getri_)(int *N, real_t *A, int *LDA, int *IPIV, real_t *WORK,
int *LWORK, int *INFO);
extern "C" void
MFEM_LAPACK_PREFIX(syevr_)(char *JOBZ, char *RANGE, char *UPLO, int *N,
real_t *A, int *LDA, real_t *VL, real_t *VU, int *IL,
int *IU, real_t *ABSTOL, int *M, real_t *W,
real_t *Z, int *LDZ, int *ISUPPZ, real_t *WORK,
int *LWORK, int *IWORK, int *LIWORK, int *INFO);
extern "C" void
MFEM_LAPACK_PREFIX(syev_)(char *JOBZ, char *UPLO, int *N, real_t *A, int *LDA,
real_t *W, real_t *WORK, int *LWORK, int *INFO);
extern "C" void
MFEM_LAPACK_PREFIX(sygv_) (int *ITYPE, char *JOBZ, char *UPLO, int * N,
real_t *A, int *LDA, real_t *B, int *LDB, real_t *W,
real_t *WORK, int *LWORK, int *INFO);
extern "C" void
MFEM_LAPACK_PREFIX(gesvd_)(char *JOBU, char *JOBVT, int *M, int *N, real_t *A,
int *LDA, real_t *S, real_t *U, int *LDU, real_t *VT,
int *LDVT, real_t *WORK, int *LWORK, int *INFO);
extern "C" void
MFEM_LAPACK_PREFIX(trsm_)(char *side, char *uplo, char *transa, char *diag,
int *m, int *n, real_t *alpha, real_t *a, int *lda,
real_t *b, int *ldb);
extern "C" void
MFEM_LAPACK_PREFIX(ggev_)(char *jobvl, char *jobvr, int *n, real_t *a, int *lda,
real_t *B, int *ldb, real_t *alphar, real_t *alphai,
real_t *beta, real_t *vl, int * ldvl, real_t * vr,
int * ldvr, real_t * work, int * lwork, int* info);
// Cholesky factorizations/solves
extern "C" void
MFEM_LAPACK_PREFIX(potrf_)(char *, int *, real_t *, int *, int *);
// Solve
extern "C" void
MFEM_LAPACK_PREFIX(potrs_)(char *, int *, int *, real_t *, int *, real_t *,
int *, int *);
// Triangular Solves
extern "C" void
MFEM_LAPACK_PREFIX(trtrs_)(char *, char*, char *, int *, int *, real_t *, int *,
real_t *, int *, int *);
extern "C" void
MFEM_LAPACK_PREFIX(potri_)(char *, int *, real_t *, int*, int *);
// LAPACK routines for NNLSSolver
extern "C" void
MFEM_LAPACK_PREFIX(ormqr_)(char *, char *, int *, int *, int *, real_t *, int*,
real_t *, real_t *, int *, real_t *, int*, int*);
extern "C" void
MFEM_LAPACK_PREFIX(geqrf_)(int *, int *, real_t *, int *, real_t *, real_t *,
int *, int *);
extern "C" void
MFEM_LAPACK_PREFIX(gemv_)(char *, int *, int *, real_t *, real_t *, int *,
real_t *, int *, real_t *, real_t *, int *);
extern "C" void
MFEM_LAPACK_PREFIX(trsm_)(char *side, char *uplo, char *transa, char *diag,
int *m, int *n, real_t *alpha, real_t *a, int *lda,
real_t *b, int *ldb);
// Complex
extern "C" void
MFEM_LAPACK_COMPLEX(getrf_)(int *, int *, std::complex<real_t> *, int *, int *,
int *);
extern "C" void
MFEM_LAPACK_COMPLEX(getrs_)(char *, int *, int *, std::complex<real_t> *, int *,
int *, std::complex<real_t> *, int *, int *);
extern "C" void
MFEM_LAPACK_COMPLEX(getri_)(int *, std::complex<real_t> *, int *, int *,
std::complex<real_t> *, int *, int *);
extern "C" void
MFEM_LAPACK_COMPLEX(trsm_)(char *, char *, char *, char *, int *, int *,
std::complex<real_t> *, std::complex<real_t> *,
int *, std::complex<real_t> *, int *);
extern "C" void
MFEM_LAPACK_COMPLEX(potrf_)(char *, int *, std::complex<real_t> *, int *,
int *);
extern "C" void
MFEM_LAPACK_COMPLEX(trtrs_)(char *, char*, char *, int *, int *,
std::complex<real_t> *, int *,
std::complex<real_t> *, int *, int *);
extern "C" void
MFEM_LAPACK_COMPLEX(potri_)(char *, int *, std::complex<real_t> *, int*, int *);
extern "C" void
MFEM_LAPACK_COMPLEX(potrs_)(char *, int *, int *, std::complex<real_t> *, int *,
std::complex<real_t> *, int *, int *);
}
#endif
#endif
+29 -10
View File
@@ -420,8 +420,9 @@ public:
/** @brief Perform the action of the explicit part of the operator, G:
@a v = G(@a u, t) where t is the current time.
Presently, this method is used by some PETSc ODE solvers, for more
details, see the PETSc Manual. */
Presently, this method is used by some PETSc ODE solvers and the
SUNDIALS ARKStep integrator, for more details, see either the PETSc
Manual or the ARKode User Guide, respectively. */
virtual void ExplicitMult(const Vector &u, Vector &v) const;
/** @brief Perform the action of the implicit part of the operator, F:
@@ -445,7 +446,7 @@ public:
Regardless of the choice of F and G, this function should always compute
@a k = inv(M) g(@a u, t). */
virtual void Mult(const Vector &u, Vector &v) const override;
virtual void Mult(const Vector &u, Vector &k) const override;
/** @brief Solve for the unknown @a k, at the current time t, the following
equation:
@@ -496,7 +497,17 @@ public:
details, see the PETSc Manual. */
virtual Operator& GetExplicitGradient(const Vector &u) const;
/** @brief Setup a linear system as needed by some SUNDIALS ODE solvers.
/** @brief Setup a linear system as needed by some SUNDIALS ODE solvers to
perform a similar action to ImplicitSolve, i.e., solve for k, at the
current time t, in F(u + gamma k, k, t) = G(u + gamma k, t).
The SUNDIALS ODE solvers iteratively solve for k, as knew = kold + dk.
The linear system here is for dk, obtained by linearizing the nonlinear
system F(u + gamma knew, knew, t) = G(u + gamma knew, t) about dk = 0:
F(u + gamma (kold + dk), kold + dk, t) = G(u + gamma (kold + dk), t)
=> [dF/dk + gamma (dF/du - dG/du)] dk = G - F + O(dk^2)
In other words, the linear system to be setup here is A dk = r, where
A = [dF/dk + gamma (dF/du - dG/du)] and r = G - F.
For solving an ordinary differential equation of the form
$ M \frac{dy}{dt} = g(y,t) $, recall that F and G can be defined as one
@@ -506,7 +517,7 @@ public:
2. F(u,k,t) = M k and G(u,t) = g(u,t)
3. F(u,k,t) = M k - g(u,t) and G(u,t) = 0
This function performs setup to solve $ A x = b $ where A is either
This function performs setup to solve $ A dk = r $ where A is either
1. A(@a y,t) = I - @a gamma inv(M) J(@a y,t)
2. A(@a y,t) = M - @a gamma J(@a y,t)
@@ -527,18 +538,26 @@ public:
virtual int SUNImplicitSetup(const Vector &y, const Vector &v,
int jok, int *jcur, real_t gamma);
/** @brief Solve the ODE linear system A @a x = @a b, where A is defined by
the method SUNImplicitSetup().
/** @brief Solve the ODE linear system A @a dk = @a r , where A and r are
defined by the method SUNImplicitSetup().
@param[in] b The linear system right-hand side.
@param[in,out] x On input, the initial guess. On output, the solution.
For solving an ordinary differential equation of the form
$ M \frac{dy}{dt} = g(y,t) $, recall that F and G can be defined as one
of the following:
1. F(u,k,t) = k and G(u,t) = inv(M) g(u,t)
2. F(u,k,t) = M k and G(u,t) = g(u,t)
3. F(u,k,t) = M k - g(u,t) and G(u,t) = 0
@param[in] r inv(M) g(y,t) - k for 1 or g(y,t) - M k for 2 & 3.
@param[in,out] dk On input, the initial guess. On output, the solution.
@param[in] tol Linear solve tolerance.
If not re-implemented, this method simply generates an error.
Presently, this method is used by SUNDIALS ODE solvers, for more
details, see the SUNDIALS User Guides. */
virtual int SUNImplicitSolve(const Vector &b, Vector &x, real_t tol);
virtual int SUNImplicitSolve(const Vector &r, Vector &dk, real_t tol);
/** @brief Setup the mass matrix in the ODE system
$ M \frac{dy}{dt} = g(y,t) $ .
+53 -138
View File
@@ -10,6 +10,7 @@
// CONTRIBUTING.md for details.
#include "linalg.hpp"
#include "lapack.hpp"
#include "../general/annotation.hpp"
#include "../general/forall.hpp"
#include "../general/globals.hpp"
@@ -3543,38 +3544,6 @@ void AuxSpaceSmoother::Mult(const Vector &x, Vector &y, bool transpose) const
#endif // MFEM_USE_MPI
#ifdef MFEM_USE_LAPACK
// LAPACK routines for NNLSSolver
#ifdef MFEM_USE_SINGLE
extern "C" void
sormqr_(char *, char *, int *, int *, int *, float *, int*, float *,
float *, int *, float *, int*, int*);
extern "C" void
sgeqrf_(int *, int *, float *, int *, float *, float *, int *, int *);
extern "C" void
sgemv_(char *, int *, int *, float *, float *, int *, float *, int *,
float *, float *, int *);
extern "C" void
strsm_(char *side, char *uplo, char *transa, char *diag, int *m, int *n,
float *alpha, float *a, int *lda, float *b, int *ldb);
#elif defined MFEM_USE_DOUBLE
extern "C" void
dormqr_(char *, char *, int *, int *, int *, double *, int*, double *,
double *, int *, double *, int*, int*);
extern "C" void
dgeqrf_(int *, int *, double *, int *, double *, double *, int *, int *);
extern "C" void
dgemv_(char *, int *, int *, double *, double *, int *, double *, int *,
double *, double *, int *);
extern "C" void
dtrsm_(char *side, char *uplo, char *transa, char *diag, int *m, int *n,
double *alpha, double *a, int *lda, double *b, int *ldb);
#endif
NNLSSolver::NNLSSolver()
: Solver(0), mat(nullptr), const_tol_(1.0e-14), min_nnz_(0),
@@ -3938,25 +3907,19 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
lwork = -1;
work.resize(10);
#ifdef MFEM_USE_SINGLE
sormqr_(&lside, &trans, &m, &n_update, &i_qr_start,
#elif defined MFEM_USE_DOUBLE
dormqr_(&lside, &trans, &m, &n_update, &i_qr_start,
#endif
mat_qr_data.GetData(), &m, tau.GetData(),
mat_qr_data.GetData() + (i_qr_start * m), &m,
work.data(), &lwork, &info);
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &trans, &m, &n_update,
&i_qr_start, mat_qr_data.GetData(), &m,
tau.GetData(),
mat_qr_data.GetData() + (i_qr_start * m),
&m, work.data(), &lwork, &info);
MFEM_VERIFY(info == 0, ""); // Q^T A update work calculation failed
lwork = static_cast<int>(work[0]);
work.resize(lwork);
#ifdef MFEM_USE_SINGLE
sormqr_(&lside, &trans, &m, &n_update, &i_qr_start,
#elif defined MFEM_USE_DOUBLE
dormqr_(&lside, &trans, &m, &n_update, &i_qr_start,
#endif
mat_qr_data.GetData(), &m, tau.GetData(),
mat_qr_data.GetData() + (i_qr_start * m), &m,
work.data(), &lwork, &info);
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &trans, &m, &n_update,
&i_qr_start, mat_qr_data.GetData(), &m,
tau.GetData(),
mat_qr_data.GetData() + (i_qr_start * m),
&m, work.data(), &lwork, &info);
MFEM_VERIFY(info == 0, ""); // Q^T A update failed
// Compute QR factorization of the submatrix
lwork = -1;
@@ -3977,24 +3940,16 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
sub_tau[j] = tau[i_qr_start + j];
}
#ifdef MFEM_USE_SINGLE
sgeqrf_(&m_update, &n_update,
#elif defined MFEM_USE_DOUBLE
dgeqrf_(&m_update, &n_update,
#endif
submat_data.GetData(), &m_update, sub_tau.GetData(),
work.data(), &lwork, &info);
MFEM_LAPACK_PREFIX(geqrf_)(&m_update, &n_update, submat_data.GetData(),
&m_update, sub_tau.GetData(), work.data(),
&lwork, &info);
MFEM_VERIFY(info == 0, ""); // QR update factorization work calc
lwork = static_cast<int>(work[0]);
if (lwork == 0) { lwork = 1; }
work.resize(lwork);
#ifdef MFEM_USE_SINGLE
sgeqrf_(&m_update, &n_update,
#elif defined MFEM_USE_DOUBLE
dgeqrf_(&m_update, &n_update,
#endif
submat_data.GetData(), &m_update, sub_tau.GetData(),
work.data(), &lwork, &info);
MFEM_LAPACK_PREFIX(geqrf_)(&m_update, &n_update, submat_data.GetData(),
&m_update, sub_tau.GetData(), work.data(),
&lwork, &info);
MFEM_VERIFY(info == 0, ""); // QR update factorization failed
// Copy result back
@@ -4023,23 +3978,13 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
// perform qr)
lwork = -1;
work.resize(10);
#ifdef MFEM_USE_SINGLE
sgeqrf_(&m, &n_glob,
#elif defined MFEM_USE_DOUBLE
dgeqrf_(&m, &n_glob,
#endif
mat_qr_data.GetData(), &m, tau.GetData(),
work.data(), &lwork, &info);
MFEM_LAPACK_PREFIX(geqrf_)(&m, &n_glob, mat_qr_data.GetData(), &m,
tau.GetData(), work.data(), &lwork, &info);
MFEM_VERIFY(info == 0, ""); // QR factorization work calculation
lwork = static_cast<int>(work[0]);
work.resize(lwork);
#ifdef MFEM_USE_SINGLE
sgeqrf_(&m, &n_glob,
#elif defined MFEM_USE_DOUBLE
dgeqrf_(&m, &n_glob,
#endif
mat_qr_data.GetData(), &m, tau.GetData(),
work.data(), &lwork, &info);
MFEM_LAPACK_PREFIX(geqrf_)(&m, &n_glob, mat_qr_data.GetData(), &m,
tau.GetData(), work.data(), &lwork, &info);
MFEM_VERIFY(info == 0, ""); // QR factorization failed
}
@@ -4067,25 +4012,17 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
sub_tau[0] = tau[i_qr_start];
#ifdef MFEM_USE_SINGLE
sormqr_(&lside, &trans, &m_update, &ione, &ione,
#elif defined MFEM_USE_DOUBLE
dormqr_(&lside, &trans, &m_update, &ione, &ione,
#endif
submat_data.GetData(), &m_update, sub_tau.GetData(),
sub_qt.GetData(), &m_update,
work.data(), &lwork, &info);
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &trans, &m_update, &ione, &ione,
submat_data.GetData(), &m_update,
sub_tau.GetData(), sub_qt.GetData(),
&m_update, work.data(), &lwork, &info);
MFEM_VERIFY(info == 0, ""); // H_last y work calculation failed
lwork = static_cast<int>(work[0]);
work.resize(lwork);
#ifdef MFEM_USE_SINGLE
sormqr_(&lside, &trans, &m_update, &ione, &ione,
#elif defined MFEM_USE_DOUBLE
dormqr_(&lside, &trans, &m_update, &ione, &ione,
#endif
submat_data.GetData(), &m_update, sub_tau.GetData(),
sub_qt.GetData(), &m_update,
work.data(), &lwork, &info);
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &trans, &m_update, &ione, &ione,
submat_data.GetData(), &m_update,
sub_tau.GetData(), sub_qt.GetData(),
&m_update, work.data(), &lwork, &info);
MFEM_VERIFY(info == 0, ""); // H_last y failed
// Copy result back
for (int i=0; i<m_update; ++i)
@@ -4099,25 +4036,17 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
qt_rhs_glob = rhs_avg_glob;
lwork = -1;
work.resize(10);
#ifdef MFEM_USE_SINGLE
sormqr_(&lside, &trans, &m, &ione, &n_glob,
#elif defined MFEM_USE_DOUBLE
dormqr_(&lside, &trans, &m, &ione, &n_glob,
#endif
mat_qr_data.GetData(), &m, tau.GetData(),
qt_rhs_glob.GetData(), &m,
work.data(), &lwork, &info);
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &trans, &m, &ione, &n_glob,
mat_qr_data.GetData(), &m, tau.GetData(),
qt_rhs_glob.GetData(), &m,
work.data(), &lwork, &info);
MFEM_VERIFY(info == 0, ""); // Q^T b work calculation failed
lwork = static_cast<int>(work[0]);
work.resize(lwork);
#ifdef MFEM_USE_SINGLE
sormqr_(&lside, &trans, &m, &ione, &n_glob,
#elif defined MFEM_USE_DOUBLE
dormqr_(&lside, &trans, &m, &ione, &n_glob,
#endif
mat_qr_data.GetData(), &m, tau.GetData(),
qt_rhs_glob.GetData(), &m,
work.data(), &lwork, &info);
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &trans, &m, &ione, &n_glob,
mat_qr_data.GetData(), &m, tau.GetData(),
qt_rhs_glob.GetData(), &m,
work.data(), &lwork, &info);
MFEM_VERIFY(info == 0, ""); // Q^T b failed
}
@@ -4130,14 +4059,10 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
char upper = 'U';
char nounit = 'N';
vec1 = qt_rhs_glob;
#ifdef MFEM_USE_SINGLE
strsm_(&lside, &upper, &notrans, &nounit,
#elif defined MFEM_USE_DOUBLE
dtrsm_(&lside, &upper, &notrans, &nounit,
#endif
&n_glob, &ione, &fone,
mat_qr_data.GetData(), &m,
vec1.GetData(), &n_glob);
MFEM_LAPACK_PREFIX(trsm_)(&lside, &upper, &notrans, &nounit,
&n_glob, &ione, &fone,
mat_qr_data.GetData(), &m,
vec1.GetData(), &n_glob);
if (verbosity_ > 2)
{
@@ -4360,14 +4285,10 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
{
res_glob = rhs_avg_glob;
real_t fmone = -1.0;
#ifdef MFEM_USE_SINGLE
sgemv_(&notrans, &m, &n_glob, &fmone,
#elif defined MFEM_USE_DOUBLE
dgemv_(&notrans, &m, &n_glob, &fmone,
#endif
mat_0_data.GetData(), &m,
soln_nz_glob.GetData(), &ione, &fone,
res_glob.GetData(), &ione);
MFEM_LAPACK_PREFIX(gemv_)(&notrans, &m, &n_glob, &fmone,
mat_0_data.GetData(), &m,
soln_nz_glob.GetData(), &ione, &fone,
res_glob.GetData(), &ione);
}
else
{
@@ -4381,24 +4302,18 @@ void NNLSSolver::Solve(const Vector& rhs_lb, const Vector& rhs_ub,
qqt_rhs_glob(i) = qt_rhs_glob(i);
}
#ifdef MFEM_USE_SINGLE
sormqr_(&lside, &notrans, &m, &ione, &n_glob, mat_qr_data.GetData(), &m,
#elif defined MFEM_USE_DOUBLE
dormqr_(&lside, &notrans, &m, &ione, &n_glob, mat_qr_data.GetData(), &m,
#endif
tau.GetData(), qqt_rhs_glob.GetData(), &m,
work.data(), &lwork, &info);
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &notrans, &m, &ione, &n_glob,
mat_qr_data.GetData(), &m,
tau.GetData(), qqt_rhs_glob.GetData(), &m,
work.data(), &lwork, &info);
MFEM_VERIFY(info == 0, ""); // Q Q^T b work calculation failed.
lwork = static_cast<int>(work[0]);
work.resize(lwork);
#ifdef MFEM_USE_SINGLE
sormqr_(&lside, &notrans, &m, &ione, &n_glob, mat_qr_data.GetData(), &m,
#elif defined MFEM_USE_DOUBLE
dormqr_(&lside, &notrans, &m, &ione, &n_glob, mat_qr_data.GetData(), &m,
#endif
tau.GetData(), qqt_rhs_glob.GetData(), &m,
work.data(), &lwork, &info);
MFEM_LAPACK_PREFIX(ormqr_)(&lside, &notrans, &m, &ione, &n_glob,
mat_qr_data.GetData(), &m,
tau.GetData(), qqt_rhs_glob.GetData(), &m,
work.data(), &lwork, &info);
MFEM_VERIFY(info == 0, ""); // Q Q^T b calculation failed.
res_glob = rhs_avg_glob;
res_glob -= qqt_rhs_glob;
+19 -11
View File
@@ -1267,24 +1267,32 @@ real_t SparseMatrix::InnerProduct(const Vector &x, const Vector &y) const
void SparseMatrix::GetRowSums(Vector &x) const
{
for (int i = 0; i < height; i++)
if (Finalized())
{
real_t a = 0.0;
if (A)
auto d_I = ReadI();
auto d_A = ReadData();
auto d_x = x.Write();
mfem::forall(height, [=] MFEM_HOST_DEVICE (int i)
{
for (int j = I[i], end = I[i+1]; j < end; j++)
real_t sum = 0.0;
for (int j = d_I[i], end = d_I[i+1]; j < end; j++)
{
a += A[j];
sum += d_A[j];
}
}
else
d_x[i] = sum;
});
}
else
{
for (int i = 0; i < height; i++)
{
real_t a = 0.0;
for (RowNode *np = Rows[i]; np != NULL; np = np->Prev)
{
a += np->Value;
}
x(i) = a;
}
x(i) = a;
}
}
@@ -3300,7 +3308,7 @@ void SparseMatrix::Print(std::ostream & os, int width_) const
{
int i, j;
if (A == NULL)
if (A.Empty())
{
RowNode *nd;
for (i = 0; i < height; i++)
@@ -3354,7 +3362,7 @@ void SparseMatrix::PrintMatlab(std::ostream & os) const
os.setf(ios::scientific);
std::streamsize old_prec = os.precision(14);
if (A == NULL)
if (A.Empty())
{
RowNode *nd;
for (i = 0; i < height; i++)
@@ -3397,7 +3405,7 @@ void SparseMatrix::PrintMM(std::ostream & os) const
os << height << " " << width << " " << NumNonZeroElems() << '\n';
if (A == NULL)
if (A.Empty())
{
RowNode *nd;
for (i = 0; i < height; i++)
+1 -1
View File
@@ -216,7 +216,7 @@ public:
void ClearCuSparse() { ClearGPUSparse(); }
/// Check if the SparseMatrix is empty.
bool Empty() const { return (A == NULL) && (Rows == NULL); }
bool Empty() const { return A.Empty() && (Rows == NULL); }
/// Return the array #I.
inline int *GetI() { return I; }
+37 -10
View File
@@ -1341,38 +1341,59 @@ CVODESSolver::~CVODESSolver()
// ARKStep interface
// ---------------------------------------------------------------------------
int ARKStepSolver::RHS1(realtype t, const N_Vector y, N_Vector ydot,
int ARKStepSolver::RHS1(realtype t, const N_Vector y, N_Vector result,
void *user_data)
{
// Get data from N_Vectors
const SundialsNVector mfem_y(y);
SundialsNVector mfem_ydot(ydot);
SundialsNVector mfem_result(result);
ARKStepSolver *self = static_cast<ARKStepSolver*>(user_data);
// Compute f(t, y) in y' = f(t, y) or fe(t, y) in y' = fe(t, y) + fi(t, y)
// Compute either f(t, y) in one of
// 1. y' = f(t, y)
// 2. M y' = f(t, y)
// or fe(t, y) in one of
// 1. y' = fe(t, y) + fi(t, y)
// 2. M y' = fe(t, y) + fi(t, y)
self->f->SetTime(t);
if (self->rk_type == IMEX)
{
self->f->SetEvalMode(TimeDependentOperator::ADDITIVE_TERM_1);
}
self->f->Mult(mfem_y, mfem_ydot);
if (self->f->isExplicit()) // ODE is in form 1
{
self->f->Mult(mfem_y, mfem_result);
}
else // ODE is in form 2
{
self->f->ExplicitMult(mfem_y, mfem_result);
}
// Return success
return (0);
}
int ARKStepSolver::RHS2(realtype t, const N_Vector y, N_Vector ydot,
int ARKStepSolver::RHS2(realtype t, const N_Vector y, N_Vector result,
void *user_data)
{
// Get data from N_Vectors
const SundialsNVector mfem_y(y);
SundialsNVector mfem_ydot(ydot);
SundialsNVector mfem_result(result);
ARKStepSolver *self = static_cast<ARKStepSolver*>(user_data);
// Compute fi(t, y) in y' = fe(t, y) + fi(t, y)
// Compute fi(t, y) in one of
// 1. y' = fe(t, y) + fi(t, y) (ODE is expressed in EXPLICIT form)
// 2. M y' = fe(t, y) + fi(y, t) (ODE is expressed in IMPLICIT form)
self->f->SetTime(t);
self->f->SetEvalMode(TimeDependentOperator::ADDITIVE_TERM_2);
self->f->Mult(mfem_y, mfem_ydot);
if (self->f->isExplicit())
{
self->f->Mult(mfem_y, mfem_result);
}
else
{
self->f->ExplicitMult(mfem_y, mfem_result);
}
// Return success
return (0);
@@ -1567,7 +1588,7 @@ void ARKStepSolver::Init(TimeDependentOperator &f_)
reinit = true;
}
void ARKStepSolver::Step(Vector &x, double &t, double &dt)
void ARKStepSolver::Step(Vector &x, real_t &t, real_t &dt)
{
Y->MakeRef(x, 0, x.Size());
MFEM_VERIFY(Y->Size() == x.Size(), "size mismatch");
@@ -1666,7 +1687,7 @@ void ARKStepSolver::UseMFEMMassLinearSolver(int tdep)
LSM->content = this;
LSM->ops->gettype = LSGetType;
LSM->ops->solve = ARKStepSolver::MassSysSolve;
LSA->ops->free = LSFree;
LSM->ops->free = LSFree;
M = SUNMatNewEmpty(Sundials::GetContext());
MFEM_VERIFY(M, "error in SUNMatNewEmpty()");
@@ -1683,6 +1704,9 @@ void ARKStepSolver::UseMFEMMassLinearSolver(int tdep)
// Set the linear system function
flag = ARKStepSetMassFn(sundials_mem, ARKStepSolver::MassSysSetup);
MFEM_VERIFY(flag == ARK_SUCCESS, "error in ARKStepSetMassFn()");
// Check that the ODE is not expressed in EXPLICIT form
MFEM_VERIFY(!f->isExplicit(), "ODE operator is expressed in EXPLICIT form")
}
void ARKStepSolver::UseSundialsMassLinearSolver(int tdep)
@@ -1703,6 +1727,9 @@ void ARKStepSolver::UseSundialsMassLinearSolver(int tdep)
flag = ARKStepSetMassTimes(sundials_mem, NULL, ARKStepSolver::MassMult2,
this);
MFEM_VERIFY(flag == ARK_SUCCESS, "error in ARKStepSetMassTimes()");
// Check that the ODE is not expressed in EXPLICIT form
MFEM_VERIFY(!f->isExplicit(), "ODE operator is expressed in EXPLICIT form")
}
void ARKStepSolver::SetStepMode(int itask)
+1 -1
View File
@@ -763,7 +763,7 @@ public:
@note On input, the values of @a t and @a dt are used to compute desired
output time for the integration, tout = @a t + @a dt.
*/
virtual void Step(Vector &x, double &t, double &dt);
virtual void Step(Vector &x, real_t &t, real_t &dt) override;
/** @brief Attach the linear system setup and solve methods from the
TimeDependentOperator i.e., SUNImplicitSetup() and SUNImplicitSolve() to
+1
View File
@@ -12,6 +12,7 @@
set(SRCS
attribute_sets.cpp
element.cpp
exodus_writer.cpp
face_nbr_geom.cpp
gmsh.cpp
hexahedron.cpp
File diff suppressed because it is too large Load Diff
+43 -11
View File
@@ -466,7 +466,8 @@ void Mesh::GetBdrElementTransformation(int i,
{
for (int j = 0; j < n; j++)
{
pm(k,j) = nodes(vdofs[n*k+j]);
int idx = vdofs[n*k+j];
pm(k,j) = nodes((idx<0)? -1-idx:idx);
}
}
ElTr->SetFE(bdr_el);
@@ -7131,17 +7132,15 @@ Table *Mesh::GetEdgeVertexTable() const
Table *Mesh::GetVertexToElementTable()
{
int i, j, nv, *v;
Table *vert_elem = new Table;
vert_elem->MakeI(NumOfVertices);
for (i = 0; i < NumOfElements; i++)
for (int i = 0; i < NumOfElements; i++)
{
nv = elements[i]->GetNVertices();
v = elements[i]->GetVertices();
for (j = 0; j < nv; j++)
const int nv = elements[i]->GetNVertices();
const int *v = elements[i]->GetVertices();
for (int j = 0; j < nv; j++)
{
vert_elem->AddAColumnInRow(v[j]);
}
@@ -7149,11 +7148,11 @@ Table *Mesh::GetVertexToElementTable()
vert_elem->MakeJ();
for (i = 0; i < NumOfElements; i++)
for (int i = 0; i < NumOfElements; i++)
{
nv = elements[i]->GetNVertices();
v = elements[i]->GetVertices();
for (j = 0; j < nv; j++)
const int nv = elements[i]->GetNVertices();
const int *v = elements[i]->GetVertices();
for (int j = 0; j < nv; j++)
{
vert_elem->AddConnection(v[j], i);
}
@@ -7164,6 +7163,39 @@ Table *Mesh::GetVertexToElementTable()
return vert_elem;
}
Table *Mesh::GetVertexToBdrElementTable()
{
Table *vert_bdr_elem = new Table;
vert_bdr_elem->MakeI(NumOfVertices);
for (int i = 0; i < NumOfBdrElements; i++)
{
const int nv = boundary[i]->GetNVertices();
const int *v = boundary[i]->GetVertices();
for (int j = 0; j < nv; j++)
{
vert_bdr_elem->AddAColumnInRow(v[j]);
}
}
vert_bdr_elem->MakeJ();
for (int i = 0; i < NumOfBdrElements; i++)
{
const int nv = boundary[i]->GetNVertices();
const int *v = boundary[i]->GetVertices();
for (int j = 0; j < nv; j++)
{
vert_bdr_elem->AddConnection(v[j], i);
}
}
vert_bdr_elem->ShiftUpI();
return vert_bdr_elem;
}
Table *Mesh::GetFaceToElementTable() const
{
Table *face_elem = new Table;
+8
View File
@@ -1537,6 +1537,9 @@ public:
/// @note The returned Table should be deleted by the caller
Table *GetVertexToElementTable();
/// @note The returned Table should be deleted by the caller
Table *GetVertexToBdrElementTable();
/// Return the "face"-element Table. Here "face" refers to face (3D),
/// edge (2D), or vertex (1D).
///
@@ -2331,6 +2334,11 @@ public:
bool high_order_output=false,
int compression_level=0);
#ifdef MFEM_USE_NETCDF
/// @brief Export a mesh to an Exodus II file.
void PrintExodusII(const std::string fpath);
#endif
/** @brief Prints the mesh with boundary elements given by the boundary of
the subdomains, so that the boundary of subdomain i has boundary
attribute i+1. */
+103 -18
View File
@@ -1857,7 +1857,7 @@ NURBSPatch *Revolve3D(NURBSPatch &patch, real_t n[], real_t ang, int times)
{
if (patch.Dim != 4)
{
mfem_error("Revolve3D(NURBSPatch &, double [], double)");
mfem_error("Revolve3D(NURBSPatch &, real_t [], real_t)");
}
int size = 1, ns;
@@ -2008,23 +2008,23 @@ NURBSExtension::NURBSExtension(std::istream &input, bool spacing)
input >> numSpacing;
for (int j = 0; j < numSpacing; j++)
{
int ki, spacingType, numIntParam, numDoubleParam;
input >> ki >> spacingType >> numIntParam >> numDoubleParam;
int ki, spacingType, numIntParam, numRealParam;
input >> ki >> spacingType >> numIntParam >> numRealParam;
MFEM_VERIFY(0 <= ki && ki < NumOfKnotVectors,
"Invalid knotvector index");
MFEM_VERIFY(numIntParam >= 0 && numDoubleParam >= 0,
MFEM_VERIFY(numIntParam >= 0 && numRealParam >= 0,
"Invalid number of parameters in KnotVector");
Array<int> ipar(numIntParam);
Vector dpar(numDoubleParam);
Vector dpar(numRealParam);
for (int i=0; i<numIntParam; ++i)
{
input >> ipar[i];
}
for (int i=0; i<numDoubleParam; ++i)
for (int i=0; i<numRealParam; ++i)
{
input >> dpar[i];
}
@@ -2064,7 +2064,7 @@ NURBSExtension::NURBSExtension(std::istream &input, bool spacing)
new KnotVector(*patches[p]->GetKV(0));
}
}
if (Dimension() == 2)
else if (Dimension() == 2)
{
patchTopo->GetElementEdges(p, edges, oedge);
if (knotVectors[KnotInd(edges[0])] == NULL)
@@ -2230,7 +2230,8 @@ NURBSExtension::NURBSExtension(NURBSExtension *parent, int newOrder)
}
NURBSExtension::NURBSExtension(NURBSExtension *parent,
const Array<int> &newOrders)
const Array<int> &newOrders, Mode mode)
: mode(mode)
{
newOrders.Copy(mOrders);
SetOrderFromOrders();
@@ -3891,7 +3892,16 @@ void NURBSExtension::GenerateBdrElementDofTable()
int ndof = bel_dof->Size_of_connections();
for (int i = 0; i < ndof; i++)
{
dof[i] = activeDof[dof[i]] - 1;
int idx = dof[i];
if (idx < 0)
{
dof[i] = -1 - (activeDof[-1-idx] - 1);
dof[i] = -activeDof[-1-idx];
}
else
{
dof[i] = activeDof[idx] - 1;
}
}
}
@@ -3943,6 +3953,22 @@ void NURBSExtension::Generate2DBdrElementDofTable()
// Load dofs
const int nks0 = kv[0]->GetNKS();
const int ord0 = kv[0]->GetOrder();
bool add_dofs = true;
int s = 1;
if (mode == Mode::H_DIV)
{
int fn = patchTopo->GetBdrElementFaceIndex(b);
if (ord0 == mOrders.Max()) { add_dofs = false; }
if (fn == 0) { s = -1; }
if (fn == 2) { s = -1; }
}
else if (mode == Mode::H_CURL)
{
if (ord0 == mOrders.Max()) { add_dofs = false; }
}
for (int i = 0; i < nks0; i++)
{
if (kv[0]->isElement(i))
@@ -3950,10 +3976,14 @@ void NURBSExtension::Generate2DBdrElementDofTable()
if (activeBdrElem[gbe])
{
Connection conn(lbe,0);
for (int ii = 0; ii <= ord0; ii++)
if (add_dofs)
{
conn.to = DofMap(p2g[(okv[0] >= 0) ? (i+ii) : (nx-i-ii)]);
bel_dof_list.Append(conn);
for (int ii = 0; ii <= ord0; ii++)
{
conn.to = DofMap(p2g[(okv[0] >= 0) ? (i+ii) : (nx-i-ii)]);
if (s == -1) { conn.to = -1 -conn.to; }
bel_dof_list.Append(conn);
}
}
bel_to_patch[lbe] = b;
bel_to_IJK(lbe,0) = (okv[0] >= 0) ? i : (-1-i);
@@ -3990,6 +4020,25 @@ void NURBSExtension::Generate3DBdrElementDofTable()
const int ord0 = kv[0]->GetOrder();
const int nks1 = kv[1]->GetNKS();
const int ord1 = kv[1]->GetOrder();
// Check if dofs are actually defined on boundary
bool add_dofs = true;
int s = 1;
if (mode == Mode::H_DIV)
{
int fn = patchTopo->GetBdrElementFaceIndex(b);
if (ord0 != ord1) { add_dofs = false; }
if (fn == 4) { s = -1; }
if (fn == 1) { s = -1; }
if (fn == 0) { s = -1; }
}
else if (mode == Mode::H_CURL)
{
if (ord0 == ord1) { add_dofs = false; }
}
for (int j = 0; j < nks1; j++)
{
if (kv[1]->isElement(j))
@@ -4001,14 +4050,18 @@ void NURBSExtension::Generate3DBdrElementDofTable()
if (activeBdrElem[gbe])
{
Connection conn(lbe,0);
for (int jj = 0; jj <= ord1; jj++)
if (add_dofs)
{
const int jj_ = (okv[1] >= 0) ? (j+jj) : (ny-j-jj);
for (int ii = 0; ii <= ord0; ii++)
for (int jj = 0; jj <= ord1; jj++)
{
const int ii_ = (okv[0] >= 0) ? (i+ii) : (nx-i-ii);
conn.to = DofMap(p2g(ii_, jj_));
bel_dof_list.Append(conn);
const int jj_ = (okv[1] >= 0) ? (j+jj) : (ny-j-jj);
for (int ii = 0; ii <= ord0; ii++)
{
const int ii_ = (okv[0] >= 0) ? (i+ii) : (nx-i-ii);
conn.to = DofMap(p2g(ii_, jj_));
if (s == -1) { conn.to = -1 -conn.to; }
bel_dof_list.Append(conn);
}
}
}
bel_to_patch[lbe] = b;
@@ -4241,6 +4294,38 @@ void NURBSExtension::DegreeElevate(int rel_degree, int degree)
}
}
NURBSExtension* NURBSExtension::GetDivExtension(int component)
{
// Smarter routine
if (GetNP() > 1)
{
mfem_error("NURBSExtension::GetDivExtension currently "
"only works for single patch NURBS meshes ");
}
Array<int> newOrders = GetOrders();
newOrders[component] += 1;
return new NURBSExtension(this, newOrders, Mode::H_DIV);
}
NURBSExtension* NURBSExtension::GetCurlExtension(int component)
{
// Smarter routine
if (GetNP() > 1)
{
mfem_error("NURBSExtension::GetCurlExtension currently "
"only works for single patch NURBS meshes ");
}
Array<int> newOrders = GetOrders();
for (int c = 0; c < newOrders.Size(); c++) { newOrders[c]++; }
newOrders[component] -= 1;
return new NURBSExtension(this, newOrders, Mode::H_CURL);
}
void NURBSExtension::UniformRefinement(Array<int> const& rf)
{
for (int p = 0; p < patches.Size(); p++)
+24 -1
View File
@@ -426,6 +426,16 @@ class NURBSExtension
friend class NURBSPatchMap;
protected:
/// Flag for indicating what type of NURBS fespace this extension is used for.
enum class Mode
{
H_1, ///> Extension for a standard scalar-valued space
H_DIV, ///> Extension for a divergence conforming vector-valued space
H_CURL, ///> Extension for a curl conforming vector-valued space
};
Mode mode = Mode::H_1;
/// Order of KnotVectors, see GetOrder() for description.
int mOrder;
@@ -655,8 +665,10 @@ public:
/** @a note If a KnotVector in @a parent already has order greater than or
equal to the corresponding entry in @a newOrder, it will be used
unmodified. */
NURBSExtension(NURBSExtension *parent, const Array<int> &newOrders);
NURBSExtension(NURBSExtension *parent, const Array<int> &newOrders,
Mode mode = Mode::H_1);
/// Construct a NURBSExtension by merging a partitioned NURBS mesh.
NURBSExtension(Mesh *mesh_array[], int num_pieces);
/// Copy assignment not supported.
@@ -841,6 +853,16 @@ public:
void KnotInsert(Array<KnotVector *> &kv);
void KnotInsert(Array<Vector *> &kv);
/** Returns the NURBSExtension to be used for @a component of
an H(div) conforming NURBS space. Caller gets ownership of
the returned object, and is responsible for deletion.*/
NURBSExtension* GetDivExtension(int component);
/** Returns the NURBSExtension to be used for @a component of
an H(curl) conforming NURBS space. Caller gets ownership of
the returned object, and is responsible for deletion.*/
NURBSExtension* GetCurlExtension(int component);
void KnotRemove(Array<Vector *> &kv, real_t tol = 1.0e-12);
/** Calls GetCoarseningFactors for each patch and finds the minimum factor
@@ -848,6 +870,7 @@ public:
non-nested spacing functions. */
void GetCoarseningFactors(Array<int> & f) const;
/// Returns the index of the patch containing element @a elem.
int GetElementPatch(int elem) const { return el_to_patch[elem]; }
+5 -5
View File
@@ -15,11 +15,11 @@
//
// Sample runs
//
// acoustics -ref 4 -o 1 -rnum 1.0
// acoustics -m ../../data/inline-tri.mesh -ref 4 -o 2 -sc -rnum 3.0
// acoustics -m ../../data/amr-quad.mesh -ref 3 -o 3 -sc -rnum 4.5 -prob 1
// acoustics -m ../../data/inline-quad.mesh -ref 2 -o 4 -sc -rnum 11.5 -prob 1
// acoustics -m ../../data/inline-hex.mesh -ref 1 -o 2 -sc -rnum 1.0
// acoustics -ref 4 -o 1 -rnum 1.0
// acoustics -m ../../data/inline-tri.mesh -ref 4 -o 2 -sc -rnum 3.0
// acoustics -m ../../data/amr-quad.mesh -ref 3 -o 3 -sc -rnum 4.5 -prob 1
// acoustics -m ../../data/inline-quad.mesh -ref 2 -o 4 -sc -rnum 11.5 -prob 1
// acoustics -m ../../data/inline-hex.mesh -ref 1 -o 2 -sc -rnum 1.0
// Description:
// This example code demonstrates the use of MFEM to define and solve
+6 -6
View File
@@ -14,14 +14,14 @@
// Compile with: make convection-diffusion
//
// sample runs
// convection-diffusion -m ../../data/star.mesh -o 2 -ref 2 -theta 0.0 -eps 1e-1 -beta '2 3'
// convection-diffusion -m ../../data/beam-hex.mesh -o 2 -ref 2 -theta 0.0 -eps 1e0 -beta '1 0 2'
// convection-diffusion -m ../../data/inline-tri.mesh -o 3 -ref 2 -theta 0.0 -eps 1e-2 -beta '4 2' -sc
// convection-diffusion -m ../../data/star.mesh -o 2 -ref 2 -theta 0.0 -eps 1e-1 -beta '2 3'
// convection-diffusion -m ../../data/beam-hex.mesh -o 2 -ref 2 -theta 0.0 -eps 1e0 -beta '1 0 2'
// convection-diffusion -m ../../data/inline-tri.mesh -o 3 -ref 2 -theta 0.0 -eps 1e-2 -beta '4 2' -sc
// AMR runs
// convection-diffusion -o 3 -ref 5 -prob 1 -eps 1e-1 -theta 0.75
// convection-diffusion -o 2 -ref 9 -prob 1 -eps 1e-2 -theta 0.75
// convection-diffusion -o 3 -ref 9 -prob 1 -eps 1e-3 -theta 0.75 -sc
// convection-diffusion -o 3 -ref 5 -prob 1 -eps 1e-1 -theta 0.75
// convection-diffusion -o 2 -ref 9 -prob 1 -eps 1e-2 -theta 0.75
// convection-diffusion -o 3 -ref 9 -prob 1 -eps 1e-3 -theta 0.75 -sc
// Description:
// This example code demonstrates the use of MFEM to define and solve
+4 -4
View File
@@ -14,10 +14,10 @@
// Compile with: make maxwell
//
// Sample runs
// maxwell -m ../../data/inline-tri.mesh -ref 4 -o 1 -rnum 1.0
// maxwell -m ../../data/amr-quad.mesh -ref 3 -o 2 -rnum 1.6 -sc
// maxwell -m ../../data/inline-quad.mesh -ref 2 -o 3 -rnum 4.2 -sc
// maxwell -m ../../data/inline-hex.mesh -ref 1 -o 2 -sc -rnum 1.0
// maxwell -m ../../data/inline-tri.mesh -ref 4 -o 1 -rnum 1.0
// maxwell -m ../../data/amr-quad.mesh -ref 3 -o 2 -rnum 1.6 -sc
// maxwell -m ../../data/inline-quad.mesh -ref 2 -o 3 -rnum 4.2 -sc
// maxwell -m ../../data/inline-hex.mesh -ref 1 -o 2 -sc -rnum 1.0
// Description:
// This example code demonstrates the use of MFEM to define and solve
+11 -11
View File
@@ -15,19 +15,19 @@
//
// sample runs
// mpirun -np 4 pacoustics -o 3 -m ../../data/star.mesh -sref 1 -pref 2 -rnum 1.9 -sc -prob 0
// mpirun -np 4 pacoustics -o 3 -m ../../data/inline-quad.mesh -sref 1 -pref 2 -rnum 5.2 -sc -prob 1
// mpirun -np 4 pacoustics -o 4 -m ../../data/inline-tri.mesh -sref 1 -pref 2 -rnum 7.1 -sc -prob 1
// mpirun -np 4 pacoustics -o 2 -m ../../data/inline-hex.mesh -sref 0 -pref 1 -rnum 1.9 -sc -prob 0
// mpirun -np 4 pacoustics -o 3 -m ../../data/inline-quad.mesh -sref 2 -pref 1 -rnum 7.1 -sc -prob 2
// mpirun -np 4 pacoustics -o 2 -m ../../data/inline-hex.mesh -sref 0 -pref 1 -rnum 4.1 -sc -prob 2
// mpirun -np 4 pacoustics -o 3 -m meshes/scatter.mesh -sref 1 -pref 1 -rnum 7.1 -sc -prob 3
// mpirun -np 4 pacoustics -o 4 -m meshes/scatter.mesh -sref 1 -pref 1 -rnum 10.1 -sc -prob 4
// mpirun -np 4 pacoustics -o 4 -m meshes/scatter.mesh -sref 1 -pref 1 -rnum 12.1 -sc -prob 5
// mpirun -np 4 pacoustics -o 3 -m ../../data/star.mesh -sref 1 -pref 2 -rnum 1.9 -sc -prob 0
// mpirun -np 4 pacoustics -o 3 -m ../../data/inline-quad.mesh -sref 1 -pref 2 -rnum 5.2 -sc -prob 1
// mpirun -np 4 pacoustics -o 4 -m ../../data/inline-tri.mesh -sref 1 -pref 2 -rnum 7.1 -sc -prob 1
// mpirun -np 4 pacoustics -o 2 -m ../../data/inline-hex.mesh -sref 0 -pref 1 -rnum 1.9 -sc -prob 0
// mpirun -np 4 pacoustics -o 3 -m ../../data/inline-quad.mesh -sref 2 -pref 1 -rnum 7.1 -sc -prob 2
// mpirun -np 4 pacoustics -o 2 -m ../../data/inline-hex.mesh -sref 0 -pref 1 -rnum 4.1 -sc -prob 2
// mpirun -np 4 pacoustics -o 3 -m meshes/scatter.mesh -sref 1 -pref 1 -rnum 7.1 -sc -prob 3
// mpirun -np 4 pacoustics -o 4 -m meshes/scatter.mesh -sref 1 -pref 1 -rnum 10.1 -sc -prob 4
// mpirun -np 4 pacoustics -o 4 -m meshes/scatter.mesh -sref 1 -pref 1 -rnum 12.1 -sc -prob 5
// AMR runs
// mpirun -np 4 pacoustics -o 3 -m meshes/scatter.mesh -sref 0 -pref 7 -theta 0.75 -rnum 10.1 -sc -prob 3
// mpirun -np 4 pacoustics -o 3 -m meshes/scatter.mesh -sref 0 -pref 12 -theta 0.75 -rnum 20.1 -sc -prob 3
// mpirun -np 4 pacoustics -o 3 -m meshes/scatter.mesh -sref 0 -pref 7 -theta 0.75 -rnum 10.1 -sc -prob 3
// mpirun -np 4 pacoustics -o 3 -m meshes/scatter.mesh -sref 0 -pref 12 -theta 0.75 -rnum 20.1 -sc -prob 3
// Description:
// This example code demonstrates the use of MFEM to define and solve
+7 -7
View File
@@ -11,17 +11,17 @@
//
// MFEM Ultraweak DPG parallel example for convection-diffusion
//
// Compile with: make pconvection-diffusion
// Compile with: make pconvection-diffusion
//
// sample runs
// mpirun -np 4 pconvection-diffusion -o 2 -ref 3 -prob 0 -eps 1e-1 -beta '4 2' -theta 0.0
// mpirun -np 4 pconvection-diffusion -o 3 -ref 3 -prob 0 -eps 1e-2 -beta '2 3' -theta 0.0
// mpirun -np 4 pconvection-diffusion -m ../../data/inline-hex.mesh -o 2 -ref 1 -prob 0 -sc -eps 1e-1 -theta 0.0
// mpirun -np 4 pconvection-diffusion -o 2 -ref 3 -prob 0 -eps 1e-1 -beta '4 2' -theta 0.0
// mpirun -np 4 pconvection-diffusion -o 3 -ref 3 -prob 0 -eps 1e-2 -beta '2 3' -theta 0.0
// mpirun -np 4 pconvection-diffusion -m ../../data/inline-hex.mesh -o 2 -ref 1 -prob 0 -sc -eps 1e-1 -theta 0.0
// AMR runs
// mpirun -np 4 pconvection-diffusion -o 3 -ref 10 -prob 1 -eps 1e-3 -beta '1 0' -theta 0.7 -sc
// mpirun -np 4 pconvection-diffusion -o 3 -ref 15 -prob 2 -eps 5e-3 -theta 0.7 -sc
// mpirun -np 4 pconvection-diffusion -o 2 -ref 12 -prob 3 -eps 1e-2 -beta '1 2' -theta 0.7 -sc
// mpirun -np 4 pconvection-diffusion -o 3 -ref 10 -prob 1 -eps 1e-3 -beta '1 0' -theta 0.7 -sc
// mpirun -np 4 pconvection-diffusion -o 3 -ref 15 -prob 2 -eps 5e-3 -theta 0.7 -sc
// mpirun -np 4 pconvection-diffusion -o 2 -ref 12 -prob 3 -eps 1e-2 -beta '1 2' -theta 0.7 -sc
// Description:
// This example code demonstrates the use of MFEM to define and solve a parallel
+7 -7
View File
@@ -14,18 +14,18 @@
// Compile with: make pdiffusion
//
// Sample runs
// mpirun -np 4 pdiffusion -m ../../data/inline-quad.mesh -o 3 -sref 1 -pref 2 -theta 0.0 -prob 0
// mpirun -np 4 pdiffusion -m ../../data/inline-hex.mesh -o 2 -sref 0 -pref 1 -theta 0.0 -prob 0 -sc
// mpirun -np 4 pdiffusion -m ../../data/beam-tet.mesh -o 3 -sref 0 -pref 2 -theta 0.0 -prob 0 -sc
// mpirun -np 4 pdiffusion -m ../../data/inline-quad.mesh -o 3 -sref 1 -pref 2 -theta 0.0 -prob 0
// mpirun -np 4 pdiffusion -m ../../data/inline-hex.mesh -o 2 -sref 0 -pref 1 -theta 0.0 -prob 0 -sc
// mpirun -np 4 pdiffusion -m ../../data/beam-tet.mesh -o 3 -sref 0 -pref 2 -theta 0.0 -prob 0 -sc
// L-shape runs
// Note: uniform ref are expected to give sub-optimal rate for the L-shape problem (rate = 2/3)
// mpirun -np 4 pdiffusion -o 2 -sref 1 -pref 5 -theta 0.0 -prob 1
// mpirun -np 4 pdiffusion -o 2 -sref 1 -pref 5 -theta 0.0 -prob 1
// L-shape AMR runs
// mpirun -np 4 pdiffusion -o 1 -sref 1 -pref 10 -theta 0.8 -prob 1
// mpirun -np 4 pdiffusion -o 2 -sref 1 -pref 8 -theta 0.75 -prob 1 -sc
// mpirun -np 4 pdiffusion -o 3 -sref 1 -pref 6 -theta 0.75 -prob 1 -sc -do 2
// mpirun -np 4 pdiffusion -o 1 -sref 1 -pref 10 -theta 0.8 -prob 1
// mpirun -np 4 pdiffusion -o 2 -sref 1 -pref 8 -theta 0.75 -prob 1 -sc
// mpirun -np 4 pdiffusion -o 3 -sref 1 -pref 6 -theta 0.75 -prob 1 -sc -do 2
// Description:
// This example code demonstrates the use of MFEM to define and solve
+7 -7
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@@ -14,16 +14,16 @@
// Compile with: make pmaxwell
//
// sample run
// mpirun -np 4 pmaxwell -m ../../data/star.mesh -o 2 -sref 0 -pref 3 -rnum 0.5 -prob 0
// mpirun -np 4 pmaxwell -m ../../data/inline-quad.mesh -o 3 -sref 0 -pref 3 -rnum 4.8 -sc -prob 0
// mpirun -np 4 pmaxwell -m ../../data/inline-hex.mesh -o 2 -sref 0 -pref 1 -rnum 0.8 -sc -prob 0
// mpirun -np 4 pmaxwell -m ../../data/inline-quad.mesh -o 3 -sref 1 -pref 3 -rnum 4.8 -sc -prob 2
// mpirun -np 4 pmaxwell -o 3 -sref 1 -pref 2 -rnum 11.8 -sc -prob 3
// mpirun -np 4 pmaxwell -o 3 -sref 1 -pref 2 -rnum 9.8 -sc -prob 4
// mpirun -np 4 pmaxwell -m ../../data/star.mesh -o 2 -sref 0 -pref 3 -rnum 0.5 -prob 0
// mpirun -np 4 pmaxwell -m ../../data/inline-quad.mesh -o 3 -sref 0 -pref 3 -rnum 4.8 -sc -prob 0
// mpirun -np 4 pmaxwell -m ../../data/inline-hex.mesh -o 2 -sref 0 -pref 1 -rnum 0.8 -sc -prob 0
// mpirun -np 4 pmaxwell -m ../../data/inline-quad.mesh -o 3 -sref 1 -pref 3 -rnum 4.8 -sc -prob 2
// mpirun -np 4 pmaxwell -o 3 -sref 1 -pref 2 -rnum 11.8 -sc -prob 3
// mpirun -np 4 pmaxwell -o 3 -sref 1 -pref 2 -rnum 9.8 -sc -prob 4
// AMR run. Note that this is a computationally intensive sample run.
// We recommend trying it on a large machine with more mpi ranks
// mpirun -np 4 pmaxwell -o 3 -sref 0 -pref 15 -prob 1 -theta 0.7 -sc
// mpirun -np 4 pmaxwell -o 3 -sref 0 -pref 15 -prob 1 -theta 0.7 -sc
// Description:
// This example code demonstrates the use of MFEM to define and solve
+12 -5
View File
@@ -10,7 +10,6 @@
// CONTRIBUTING.md for details.
#include "change_basis.hpp"
#include "../../fem/qinterp/dispatch.hpp"
#include "../../general/forall.hpp"
#include "../../linalg/dtensor.hpp"
@@ -105,17 +104,25 @@ ChangeOfBasis_L2::ChangeOfBasis_L2(FiniteElementSpace &fes)
void ChangeOfBasis_L2::Mult(const Vector &x, Vector &y) const
{
if (no_op) { y = x; return; }
using namespace internal::quadrature_interpolator;
dof2quad.B.MakeRef(B_1d);
TensorValues<QVectorLayout::byVDIM>(ne, 1, dof2quad, x, y);
const int dim = dof2quad.FE->GetDim();
const int nd = dof2quad.ndof;
const int nq = dof2quad.nqpt;
QuadratureInterpolator::TensorEvalKernels::Run(
dim, QVectorLayout::byVDIM, 1, nd, nq, ne, dof2quad.B.Read(), x.Read(),
y.Write(), 1, nd, nq);
}
void ChangeOfBasis_L2::MultTranspose(const Vector &x, Vector &y) const
{
if (no_op) { y = x; return; }
using namespace internal::quadrature_interpolator;
dof2quad.B.MakeRef(Bt_1d);
TensorValues<QVectorLayout::byVDIM>(ne, 1, dof2quad, x, y);
const int dim = dof2quad.FE->GetDim();
const int nd = dof2quad.ndof;
const int nq = dof2quad.nqpt;
QuadratureInterpolator::TensorEvalKernels::Run(
dim, QVectorLayout::byVDIM, 1, nd, nq, ne, dof2quad.B.Read(), x.Read(),
y.Write(), 1, nd, nq);
}
ChangeOfBasis_RT::ChangeOfBasis_RT(FiniteElementSpace &fes)
+12
View File
@@ -386,6 +386,9 @@ int main (int argc, char *argv[])
"S) Save in MFEM serial format\n"
"T) Save in MFEM parallel format using the current partitioning\n"
"V) Save in VTK format (only linear and quadratic meshes)\n"
#ifdef MFEM_USE_NETCDF
"X) Save in Exodus II format (only linear and quadratic meshes)\n"
#endif
"D) Save as a DataCollection\n"
"q) Quit\n"
#ifdef MFEM_USE_ZLIB
@@ -1288,6 +1291,15 @@ int main (int argc, char *argv[])
cout << "New VTK mesh file: " << omesh_file << endl;
}
#ifdef MFEM_USE_NETCDF
if (mk == 'X')
{
const char omesh_file[] = "mesh-explorer.e";
mesh->PrintExodusII(omesh_file);
cout << "New Exodus II mesh file: " << omesh_file << endl;
}
#endif
if (mk == 'D')
{
cout << "What type of DataCollection?\n"
+76 -7
View File
@@ -13,6 +13,18 @@ add_mfem_miniapp(nurbs_ex1
MAIN nurbs_ex1.cpp
LIBRARIES mfem)
add_mfem_miniapp(nurbs_ex3
MAIN nurbs_ex3.cpp
LIBRARIES mfem)
add_mfem_miniapp(nurbs_ex5
MAIN nurbs_ex5.cpp
LIBRARIES mfem)
add_mfem_miniapp(nurbs_ex24
MAIN nurbs_ex24.cpp
LIBRARIES mfem)
add_mfem_miniapp(nurbs_curveint
MAIN nurbs_curveint.cpp
LIBRARIES mfem)
@@ -29,6 +41,10 @@ add_mfem_miniapp(nurbs_patch_ex1
MAIN nurbs_patch_ex1.cpp
LIBRARIES mfem)
add_mfem_miniapp(nurbs_solenoidal
MAIN nurbs_solenoidal.cpp
LIBRARIES mfem)
if (MFEM_ENABLE_TESTING)
add_test(NAME nurbs_ex1_1d_r1_o2_ser
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
@@ -64,6 +80,10 @@ if (MFEM_ENABLE_TESTING)
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/pipe-nurbs-2d.mesh -o 2 --weak-bc -r 2)
add_test(NAME nurbs_ex1_neu_r2_ser
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/pipe-nurbs-2d.mesh -o 2 -r 2 --neu "3")
add_test(NAME nurbs_ex1_weak_mp_ser
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/ball-nurbs.mesh -o 2 --weak-bc -r 0)
@@ -125,9 +145,60 @@ if (MFEM_ENABLE_TESTING)
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
-m ${PROJECT_SOURCE_DIR}/miniapps/nurbs/meshes/two-cubes-nurbs-autoedge.mesh -o 1 -r 3 -rf ${PROJECT_SOURCE_DIR}/miniapps/nurbs/meshes/two-cubes.ref)
add_test(NAME nurbs_ex1_periodic_2d
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/pipe-nurbs-2d.mesh -o 2 -r 2 --master "3" --slave "4")
add_test(NAME nurbs_ex1_periodic_3d
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
-m ${PROJECT_SOURCE_DIR}/miniapps/nurbs/meshes/cube-nurbs.mesh -pm "1" -ps "2" -rf ${PROJECT_SOURCE_DIR}/miniapps/nurbs/meshes/cube.ref)
-m ${PROJECT_SOURCE_DIR}/miniapps/nurbs/meshes/cube-nurbs.mesh
-rf ${PROJECT_SOURCE_DIR}/miniapps/nurbs/meshes/cube.ref
--master "1" --slave "2")
add_test(NAME nurbs_ex3_2d_r1_o2_ser
COMMAND $<TARGET_FILE:nurbs_ex3> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/square-nurbs.mesh -r 1 -o 2)
add_test(NAME nurbs_ex3_3d_r1_o2_ser
COMMAND $<TARGET_FILE:nurbs_ex3> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/cube-nurbs.mesh -r 1 -o 2)
add_test(NAME nurbs_ex5_2d_r1_o2_ser
COMMAND $<TARGET_FILE:nurbs_ex5> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/square-nurbs.mesh -r 1 -o 2)
add_test(NAME nurbs_ex5_3d_r1_o2_ser
COMMAND $<TARGET_FILE:nurbs_ex5> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/cube-nurbs.mesh -r 1 -o 2)
add_test(NAME nurbs_ex24_2d_r1_o2_p0_ser
COMMAND $<TARGET_FILE:nurbs_ex24> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/pipe-nurbs-2d.mesh -r 1 -o 2 -p 0)
add_test(NAME nurbs_ex24_2d_r1_o2_p2_ser
COMMAND $<TARGET_FILE:nurbs_ex24> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/pipe-nurbs-2d.mesh -r 1 -o 2 -p 2)
add_test(NAME nurbs_ex24_3d_r1_o2_p0_ser
COMMAND $<TARGET_FILE:nurbs_ex24> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/cube-nurbs.mesh -r 1 -o 2 -p 0)
add_test(NAME nurbs_ex24_3d_r1_o2_p1_ser
COMMAND $<TARGET_FILE:nurbs_ex24> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/cube-nurbs.mesh -r 1 -o 2 -p 1)
add_test(NAME nurbs_ex24_3d_r1_o2_p2_ser
COMMAND $<TARGET_FILE:nurbs_ex24> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/cube-nurbs.mesh -r 1 -o 2 -p 2)
add_test(NAME nurbs_solenoidal_2d_r1_o2_ser
COMMAND $<TARGET_FILE:nurbs_solenoidal> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/pipe-nurbs-2d.mesh -r 1 -o 2)
add_test(NAME nurbs_solenoidal_3d_r1_o2_ser
COMMAND $<TARGET_FILE:nurbs_solenoidal> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/cube-nurbs.mesh -r 1 -o 2)
endif()
if (MFEM_USE_MPI)
@@ -135,6 +206,10 @@ if (MFEM_USE_MPI)
MAIN nurbs_ex1p.cpp
LIBRARIES mfem)
add_mfem_miniapp(nurbs_ex11p
MAIN nurbs_ex11p.cpp
LIBRARIES mfem)
if (MFEM_ENABLE_TESTING)
add_test(NAME nurbs_ex1p_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
@@ -169,13 +244,7 @@ if (MFEM_USE_MPI)
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS} $<TARGET_FILE:nurbs_ex1p> -no-vis
-m ${PROJECT_SOURCE_DIR}/data/square-disc-nurbs-patch.mesh -o 2 --weak-bc -r 1)
endif()
add_mfem_miniapp(nurbs_ex11p
MAIN nurbs_ex11p.cpp
LIBRARIES mfem)
if (MFEM_ENABLE_TESTING)
add_test(NAME nurbs_ex11p_np=4
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS} $<TARGET_FILE:nurbs_ex11p> -no-vis
+33 -4
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@@ -21,8 +21,7 @@ CONFIG_MK = $(MFEM_BUILD_DIR)/config/config.mk
MFEM_LIB_FILE = mfem_is_not_built
-include $(CONFIG_MK)
SEQ_MINIAPPS = nurbs_ex1 nurbs_patch_ex1 nurbs_curveint nurbs_printfunc nurbs_naca_cmesh
SEQ_MINIAPPS = nurbs_ex1 nurbs_patch_ex1 nurbs_ex3 nurbs_ex5 nurbs_ex24 nurbs_curveint nurbs_printfunc nurbs_solenoidal nurbs_naca_cmesh
PAR_MINIAPPS = nurbs_ex1p nurbs_ex11p
ifeq ($(MFEM_USE_MPI),NO)
MINIAPPS = $(SEQ_MINIAPPS)
@@ -103,6 +102,36 @@ endif
@$(call mfem-test,$<,, NURBS miniapp,$(EX1PATCH_ARGS_2))
@$(call mfem-test,$<,, NURBS miniapp,$(EX1PATCH_ARGS_3))
EX3_ARGS_1 := -m $(MFEM_DIR)/data/square-nurbs.mesh -r 1 -o 2
EX3_ARGS_2 := -m $(MFEM_DIR)/data/cube-nurbs.mesh -r 1 -o 2
nurbs_ex3-test-seq: nurbs_ex3
@$(call mfem-test,$<,, NURBS miniapp,$(EX3_ARGS_1))
@$(call mfem-test,$<,, NURBS miniapp,$(EX3_ARGS_2))
EX5_ARGS_1 := -m $(MFEM_DIR)/data/square-nurbs.mesh -r 1 -o 2
EX5_ARGS_2 := -m $(MFEM_DIR)/data/cube-nurbs.mesh -r 1 -o 2
nurbs_ex5-test-seq: nurbs_ex5
@$(call mfem-test,$<,, NURBS miniapp,$(EX5_ARGS_1))
@$(call mfem-test,$<,, NURBS miniapp,$(EX5_ARGS_2))
EX24_ARGS_1 := -m $(MFEM_DIR)/data/pipe-nurbs-2d.mesh -r 1 -o 2 -p 0
EX24_ARGS_2 := -m $(MFEM_DIR)/data/pipe-nurbs-2d.mesh -r 1 -o 2 -p 2
EX24_ARGS_3 := -m $(MFEM_DIR)/data/cube-nurbs.mesh -r 1 -o 2 -p 0
EX24_ARGS_4 := -m $(MFEM_DIR)/data/cube-nurbs.mesh -r 1 -o 2 -p 1
EX24_ARGS_5 := -m $(MFEM_DIR)/data/cube-nurbs.mesh -r 1 -o 2 -p 2
nurbs_ex24-test-seq: nurbs_ex24
@$(call mfem-test,$<,, NURBS miniapp,$(EX24_ARGS_1))
@$(call mfem-test,$<,, NURBS miniapp,$(EX24_ARGS_2))
@$(call mfem-test,$<,, NURBS miniapp,$(EX24_ARGS_3))
@$(call mfem-test,$<,, NURBS miniapp,$(EX24_ARGS_4))
@$(call mfem-test,$<,, NURBS miniapp,$(EX24_ARGS_5))
SOL_ARGS_1 := -m $(MFEM_DIR)/data/pipe-nurbs-2d.mesh -r 1 -o 2
SOL_ARGS_1 := -m $(MFEM_DIR)/data/cube-nurbs.mesh -r 1 -o 2
nurbs_sol-test-seq: nurbs_solenoidal
@$(call mfem-test,$<,, NURBS miniapp,$(SOL_ARGS_1))
@$(call mfem-test,$<,, NURBS miniapp,$(SOl_ARGS_2))
CI_ARGS_1 := -uw -n 9 -no-visit
CI_ARGS_2 := -nw -n 9 -no-visit
@@ -151,6 +180,6 @@ clean-build:
rm -rf *.dSYM *.TVD.*breakpoints
clean-exec:
@rm -f refined.mesh sin-fit.mesh mesh.* sol.* mode_* naca-cmesh.mesh
@rm -rf Example1*
@rm -f refined.mesh sin-fit.mesh ex5.mesh exsol.mesh mesh.* sol.* mode_* naca-cmesh.mesh sol_?.gf
@rm -rf Example1* Example3* Example5* Solenoidal_* ParaView
@rm -rf CurveInt Naca_cmesh glvis_naca-cmesh.mesh
+69 -16
View File
@@ -6,6 +6,7 @@
// nurbs_ex1 -m ../../data/square-nurbs.mesh -o 2 --weak-bc
// nurbs_ex1 -m ../../data/cube-nurbs.mesh -o 2 -no-ibp
// nurbs_ex1 -m ../../data/pipe-nurbs-2d.mesh -o 2 -no-ibp
// nurbs_ex1 -m ../../data/pipe-nurbs-2d.mesh -o 2 -r 2 --neu "3"
// nurbs_ex1 -m ../../data/square-disc-nurbs.mesh -o -1
// nurbs_ex1 -m ../../data/disc-nurbs.mesh -o -1
// nurbs_ex1 -m ../../data/pipe-nurbs.mesh -o -1
@@ -147,6 +148,7 @@ int main(int argc, char *argv[])
int ref_levels = -1;
Array<int> master(0);
Array<int> slave(0);
Array<int> neu(0);
bool static_cond = false;
bool visualization = 1;
int lod = 0;
@@ -169,6 +171,8 @@ int main(int argc, char *argv[])
"Master boundaries for periodic BCs");
args.AddOption(&slave, "-ps", "--slave",
"Slave boundaries for periodic BCs");
args.AddOption(&neu, "-n", "--neu",
"Boundaries with Neumann BCs");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree) or -1 for"
" isoparametric space.");
@@ -266,8 +270,6 @@ int main(int argc, char *argv[])
slave.Load(in, psize);
in.close();
}
master.Print();
slave.Print();
NURBSext->ConnectBoundaries(master,slave);
}
else if (order[0] == -1) // Isoparametric
@@ -323,39 +325,84 @@ int main(int argc, char *argv[])
// In this example, the boundary conditions are defined by marking all
// the boundary attributes from the mesh as essential (Dirichlet) and
// converting them to a list of true dofs.
Array<int> ess_tdof_list;
Array<int> ess_bdr(0);
Array<int> neu_bdr(0);
Array<int> per_bdr(0);
if (mesh->bdr_attributes.Size())
{
Array<int> ess_bdr(mesh->bdr_attributes.Max());
if (strongBC)
ess_bdr.SetSize(mesh->bdr_attributes.Max());
neu_bdr.SetSize(mesh->bdr_attributes.Max());
per_bdr.SetSize(mesh->bdr_attributes.Max());
ess_bdr = 1;
neu_bdr = 0;
per_bdr = 0;
// Apply Neumann BCs
for (int i = 0; i < neu.Size(); i++)
{
ess_bdr = 1;
}
else
{
ess_bdr = 0;
if ( neu[i]-1 >= 0 &&
neu[i]-1 < mesh->bdr_attributes.Max())
{
ess_bdr[neu[i]-1] = 0;
neu_bdr[neu[i]-1] = 1;
}
else
{
cout <<"Neumann boundary "<<neu[i]<<" out of range -- discarded"<< endl;
}
}
// Remove periodic BCs
// Correct for periodic BCs
for (int i = 0; i < master.Size(); i++)
{
ess_bdr[master[i]-1] = 0;
ess_bdr[slave[i]-1] = 0;
if ( master[i]-1 >= 0 &&
master[i]-1 < mesh->bdr_attributes.Max())
{
ess_bdr[master[i]-1] = 0;
neu_bdr[master[i]-1] = 0;
per_bdr[master[i]-1] = 1;
}
else
{
cout <<"Master boundary "<<master[i]<<" out of range -- discarded"<< endl;
}
}
for (int i = 0; i < slave.Size(); i++)
{
if ( slave[i]-1 >= 0 &&
slave[i]-1 < mesh->bdr_attributes.Max())
{
ess_bdr[slave[i]-1] = 0;
neu_bdr[slave[i]-1] = 0;
per_bdr[slave[i]-1] = 1;
}
else
{
cout <<"Slave boundary "<<slave[i]<<" out of range -- discarded"<< endl;
}
}
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
cout <<"Boundary conditions:"<< endl;
cout <<" - Periodic : "; per_bdr.Print();
cout <<" - Essential : "; ess_bdr.Print();
cout <<" - Neumann : "; neu_bdr.Print();
// 6. Set up the linear form b(.) which corresponds to the right-hand side of
// the FEM linear system, which in this case is (1,phi_i) where phi_i are
// the basis functions in the finite element fespace.
ConstantCoefficient one(1.0);
ConstantCoefficient mone(-1.0);
ConstantCoefficient zero(0.0);
LinearForm *b = new LinearForm(fespace);
b->AddDomainIntegrator(new DomainLFIntegrator(one));
b->AddBoundaryIntegrator( new BoundaryLFIntegrator(one),neu_bdr);
if (!strongBC)
b->AddBdrFaceIntegrator(
new DGDirichletLFIntegrator(zero, one, -1.0, kappa));
new DGDirichletLFIntegrator(zero, one, -1.0, kappa), ess_bdr);
b->Assemble();
// 7. Define the solution vector x as a finite element grid function
@@ -375,11 +422,12 @@ int main(int argc, char *argv[])
else
{
a->AddDomainIntegrator(new Diffusion2Integrator(one));
a->AddBdrFaceIntegrator(new DGDiffusionIntegrator(mone, 0.0, 0.0), neu_bdr);
}
if (!strongBC)
{
a->AddBdrFaceIntegrator(new DGDiffusionIntegrator(one, -1.0, kappa));
a->AddBdrFaceIntegrator(new DGDiffusionIntegrator(one, -1.0, kappa), ess_bdr);
}
// 9. Assemble the bilinear form and the corresponding linear system,
@@ -391,6 +439,11 @@ int main(int argc, char *argv[])
SparseMatrix A;
Vector B, X;
Array<int> ess_tdof_list(0);
if (strongBC)
{
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
cout << "Size of linear system: " << A.Height() << endl;
+459
View File
@@ -0,0 +1,459 @@
// MFEM Example 24 -- modified for NURBS FE
//
// Compile with: make nurbs_ex24
//
// Sample runs: nurbs_ex24 -m ../../data/pipe-nurbs-2d.mesh -o 2
// nurbs_ex24 -m ../../data/pipe-nurbs-2d.mesh -p 2
// nurbs_ex24 -m ../../data/cube-nurbs.mesh -o 2
// nurbs_ex24 -m ../../data/cube-nurbs.mesh -o 2 -p 1
// nurbs_ex24 -m ../../data/cube-nurbs.mesh -o 2 -p 2
// nurbs_ex24 -m ../../data/escher.mesh
// nurbs_ex24 -m ../../data/escher.mesh -o 2
// nurbs_ex24 -m ../../data/fichera.mesh
// nurbs_ex24 -m ../../data/fichera-q2.vtk
// nurbs_ex24 -m ../../data/fichera-q3.mesh
// nurbs_ex24 -m ../../data/amr-quad.mesh -o 2
// nurbs_ex24 -m ../../data/amr-hex.mesh
//
// Device sample runs -- do not work for NURBS:
// nurbs_ex24 -m ../../data/escher.mesh -pa -d cuda
// nurbs_ex24 -m ../../data/escher.mesh -pa -d raja-cuda
// nurbs_ex24 -m ../../data/escher.mesh -pa -d raja-omp
//
// Description: This example code illustrates usage of mixed finite element
// spaces, with three variants:
//
// 0) (grad p, u) for p in H^1 tested against u in H(curl)
// 1) (curl v, u) for v in H(curl) tested against u in H(div), 3D
// 2) (div v, q) for v in H(div) tested against q in L_2
//
// Using different approaches, we project the gradient, curl, or
// divergence to the appropriate space.
//
// NURBS-based H(curl) and H(div) spaces only implemented
// for meshes consisting of a single patch.
//
// We recommend viewing examples 1, 3, and 5 before viewing this
// example.
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
real_t p_exact(const Vector &x);
void gradp_exact(const Vector &, Vector &);
real_t div_gradp_exact(const Vector &x);
void v_exact(const Vector &x, Vector &v);
void curlv_exact(const Vector &x, Vector &cv);
int dim;
real_t freq = 1.0, kappa;
int main(int argc, char *argv[])
{
// 1. Parse command-line options.
const char *mesh_file = "../../data/cube-nurbs.mesh";
int ref_levels = -1;
int order = 1;
bool NURBS = true;
int prob = 0;
bool static_cond = false;
bool pa = false;
const char *device_config = "cpu";
bool visualization = 1;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&ref_levels, "-r", "--refine",
"Number of times to refine the mesh uniformly, -1 for auto.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree).");
args.AddOption(&NURBS, "-n", "--nurbs", "-nn","--no-nurbs",
"NURBS.");
args.AddOption(&prob, "-p", "--problem-type",
"Choose between 0: grad, 1: curl, 2: div");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
"--no-partial-assembly", "Enable Partial Assembly.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
kappa = freq * M_PI;
// 2. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
device.Print();
// 3. Read the mesh from the given mesh file. We can handle triangular,
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
// the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
dim = mesh->Dimension();
if ((prob == 1) &&(dim != 3))
{
MFEM_ABORT("The curl problem is only defined in 3D.");
}
int sdim = mesh->SpaceDimension();
// 4. Refine the mesh to increase the resolution. In this example we do
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
// largest number that gives a final mesh with no more than 50,000
// elements.
{
if (ref_levels < 0)
{
ref_levels = (int)floor(log(50000./mesh->GetNE())/log(2.)/dim);
}
for (int l = 0; l < ref_levels; l++)
{
mesh->UniformRefinement();
}
}
// 5. Define a finite element space on the mesh. Here we use Nedelec or
// Raviart-Thomas finite elements of the specified order.
FiniteElementCollection *trial_fec = nullptr;
FiniteElementCollection *test_fec = nullptr;
NURBSExtension *NURBSext = nullptr;
if (mesh->NURBSext && NURBS)
{
NURBSext = new NURBSExtension(mesh->NURBSext, order);
if (prob == 0)
{
trial_fec = new NURBSFECollection(order);
test_fec = new NURBS_HCurlFECollection(order, dim);
}
else if (prob == 1)
{
trial_fec = new NURBS_HCurlFECollection(order, dim);
test_fec = new NURBS_HDivFECollection(order, dim);
}
else
{
trial_fec = new NURBS_HDivFECollection(order, dim);
test_fec = new NURBSFECollection(order);
}
mfem::out<<"Create NURBS fec and ext"<<std::endl;
}
else
{
if (prob == 0)
{
trial_fec = new H1_FECollection(order, dim);
test_fec = new ND_FECollection(order, dim);
}
else if (prob == 1)
{
trial_fec = new ND_FECollection(order, dim);
test_fec = new RT_FECollection(order-1, dim);
}
else
{
trial_fec = new RT_FECollection(order-1, dim);
test_fec = new L2_FECollection(order-1, dim);
}
}
FiniteElementSpace trial_fes(mesh, NURBSext, trial_fec);
FiniteElementSpace test_fes(mesh,trial_fes.StealNURBSext(), test_fec);
int trial_size = trial_fes.GetTrueVSize();
int test_size = test_fes.GetTrueVSize();
if (prob == 0)
{
cout << "Number of Nedelec finite element unknowns: " << test_size << endl;
cout << "Number of H1 finite element unknowns: " << trial_size << endl;
}
else if (prob == 1)
{
cout << "Number of Nedelec finite element unknowns: " << trial_size << endl;
cout << "Number of Raviart-Thomas finite element unknowns: " << test_size <<
endl;
}
else
{
cout << "Number of Raviart-Thomas finite element unknowns: "
<< trial_size << endl;
cout << "Number of L2 finite element unknowns: " << test_size << endl;
}
// 6. Define the solution vector as a finite element grid function
// corresponding to the trial fespace.
GridFunction gftest(&test_fes);
GridFunction gftrial(&trial_fes);
GridFunction x(&test_fes);
FunctionCoefficient p_coef(p_exact);
VectorFunctionCoefficient gradp_coef(sdim, gradp_exact);
VectorFunctionCoefficient v_coef(sdim, v_exact);
VectorFunctionCoefficient curlv_coef(sdim, curlv_exact);
FunctionCoefficient divgradp_coef(div_gradp_exact);
if (prob == 0)
{
gftrial.ProjectCoefficient(p_coef);
}
else if (prob == 1)
{
gftrial.ProjectCoefficient(v_coef);
}
else
{
gftrial.ProjectCoefficient(gradp_coef);
}
gftrial.SetTrueVector();
gftrial.SetFromTrueVector();
// 7. Set up the bilinear forms for L2 projection.
ConstantCoefficient one(1.0);
BilinearForm a(&test_fes);
MixedBilinearForm a_mixed(&trial_fes, &test_fes);
if (pa)
{
a.SetAssemblyLevel(AssemblyLevel::PARTIAL);
a_mixed.SetAssemblyLevel(AssemblyLevel::PARTIAL);
}
if (prob == 0)
{
a.AddDomainIntegrator(new VectorFEMassIntegrator(one));
a_mixed.AddDomainIntegrator(new MixedVectorGradientIntegrator(one));
}
else if (prob == 1)
{
a.AddDomainIntegrator(new VectorFEMassIntegrator(one));
a_mixed.AddDomainIntegrator(new MixedVectorCurlIntegrator(one));
}
else
{
a.AddDomainIntegrator(new MassIntegrator(one));
a_mixed.AddDomainIntegrator(new VectorFEDivergenceIntegrator(one));
}
// 8. Assemble the bilinear form and the corresponding linear system,
// applying any necessary transformations such as: eliminating boundary
// conditions, applying conforming constraints for non-conforming AMR,
// static condensation, etc.
if (static_cond) { a.EnableStaticCondensation(); }
a.Assemble();
if (!pa) { a.Finalize(); }
a_mixed.Assemble();
if (!pa) { a_mixed.Finalize(); }
if (pa)
{
a_mixed.Mult(gftrial, x);
}
else
{
SparseMatrix& mixed = a_mixed.SpMat();
mixed.Mult(gftrial, x);
}
// 9. Define and apply a PCG solver for Ax = b with Jacobi preconditioner.
{
GridFunction rhs(&test_fes);
rhs = x;
x = 0.0;
CGSolver cg;
cg.SetRelTol(1e-12);
cg.SetMaxIter(1000);
cg.SetPrintLevel(1);
if (pa)
{
Array<int> ess_tdof_list; // empty
OperatorJacobiSmoother Jacobi(a, ess_tdof_list);
cg.SetOperator(a);
cg.SetPreconditioner(Jacobi);
cg.Mult(rhs, x);
}
else
{
SparseMatrix& Amat = a.SpMat();
DSmoother Jacobi(Amat);
cg.SetOperator(Amat);
cg.SetPreconditioner(Jacobi);
cg.Mult(rhs, x);
}
}
// 10. Compute the projection of the exact field.
GridFunction exact_proj(&test_fes);
if (prob == 0)
{
exact_proj.ProjectCoefficient(gradp_coef);
}
else if (prob == 1)
{
exact_proj.ProjectCoefficient(curlv_coef);
}
else
{
exact_proj.ProjectCoefficient(divgradp_coef);
}
exact_proj.SetTrueVector();
exact_proj.SetFromTrueVector();
// 11. Compute and print the L_2 norm of the error.
if (prob == 0)
{
real_t errSol = x.ComputeL2Error(gradp_coef);
real_t errProj = exact_proj.ComputeL2Error(gradp_coef);
cout << "\n Solution of (E_h,v) = (grad p_h,v) for E_h and v in H(curl): "
"|| E_h - grad p ||_{L_2} = " << errSol << '\n' << endl;
cout << " Projection E_h of exact grad p in H(curl): || E_h - grad p "
"||_{L_2} = " << errProj << '\n' << endl;
}
else if (prob == 1)
{
real_t errSol = x.ComputeL2Error(curlv_coef);
real_t errProj = exact_proj.ComputeL2Error(curlv_coef);
cout << "\n Solution of (E_h,w) = (curl v_h,w) for E_h and w in H(div): "
"|| E_h - curl v ||_{L_2} = " << errSol << '\n' << endl;
cout << " Projection E_h of exact curl v in H(div): || E_h - curl v "
"||_{L_2} = " << errProj << '\n' << endl;
}
else
{
int order_quad = max(3, 2*order+1);
const IntegrationRule *irs[Geometry::NumGeom];
for (int i=0; i < Geometry::NumGeom; ++i)
{
irs[i] = &(IntRules.Get(i, order_quad));
}
real_t errSol = x.ComputeL2Error(divgradp_coef, irs);
real_t errProj = exact_proj.ComputeL2Error(divgradp_coef, irs);
cout << "\n Solution of (f_h,q) = (div v_h,q) for f_h and q in L_2: "
"|| f_h - div v ||_{L_2} = " << errSol << '\n' << endl;
cout << " Projection f_h of exact div v in L_2: || f_h - div v "
"||_{L_2} = " << errProj << '\n' << endl;
}
// 12. Save the refined mesh and the solution. This output can be viewed
// later using GLVis: "glvis -m refined.mesh -g sol.gf".
ofstream mesh_ofs("refined.mesh");
mesh_ofs.precision(8);
mesh->Print(mesh_ofs);
ofstream sol_ofs("sol.gf");
sol_ofs.precision(8);
x.Save(sol_ofs);
// 13. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream sol_sock(vishost, visport);
sol_sock.precision(8);
sol_sock << "solution\n" << *mesh << x << flush;
}
// 14. Free the used memory.
delete trial_fec;
delete test_fec;
delete mesh;
return 0;
}
real_t p_exact(const Vector &x)
{
if (dim == 3)
{
return sin(x(0)) * sin(x(1)) * sin(x(2));
}
else if (dim == 2)
{
return sin(x(0)) * sin(x(1));
}
return 0.0;
}
void gradp_exact(const Vector &x, Vector &f)
{
if (dim == 3)
{
f(0) = cos(x(0)) * sin(x(1)) * sin(x(2));
f(1) = sin(x(0)) * cos(x(1)) * sin(x(2));
f(2) = sin(x(0)) * sin(x(1)) * cos(x(2));
}
else
{
f(0) = cos(x(0)) * sin(x(1));
f(1) = sin(x(0)) * cos(x(1));
if (x.Size() == 3) { f(2) = 0.0; }
}
}
real_t div_gradp_exact(const Vector &x)
{
if (dim == 3)
{
return -3.0 * sin(x(0)) * sin(x(1)) * sin(x(2));
}
else if (dim == 2)
{
return -2.0 * sin(x(0)) * sin(x(1));
}
return 0.0;
}
void v_exact(const Vector &x, Vector &v)
{
if (dim == 3)
{
v(0) = sin(kappa * x(1));
v(1) = sin(kappa * x(2));
v(2) = sin(kappa * x(0));
}
else
{
v(0) = sin(kappa * x(1));
v(1) = sin(kappa * x(0));
if (x.Size() == 3) { v(2) = 0.0; }
}
}
void curlv_exact(const Vector &x, Vector &cv)
{
if (dim == 3)
{
cv(0) = -kappa * cos(kappa * x(2));
cv(1) = -kappa * cos(kappa * x(0));
cv(2) = -kappa * cos(kappa * x(1));
}
else
{
cv = 0.0;
}
}
+284
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// MFEM Example 3 -- modified for NURBS FE
//
// Compile with: make nurbs_ex3
//
// Sample runs: nurbs_ex3 -m ../../data/square-nurbs.mesh
// nurbs_ex3 -m ../../data/square-nurbs.mesh -o 2
// nurbs_ex3 -m ../../data/cube-nurbs.mesh
//
// Description: This example code solves a simple electromagnetic diffusion
// problem corresponding to the second order definite Maxwell
// equation curl curl E + E = f with boundary condition
// E x n = <given tangential field>. Here, we use a given exact
// solution E and compute the corresponding r.h.s. f.
// We discretize with Nedelec finite elements in 2D or 3D.
//
// The example demonstrates the use of H(curl) finite element
// spaces with the curl-curl and the (vector finite element) mass
// bilinear form, as well as the computation of discretization
// error when the exact solution is known. Static condensation is
// also illustrated.
//
// NURBS-based H(curl) spaces only implemented for meshes
// consisting of a single patch.
//
// We recommend viewing examples 1-2 before viewing this example.
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
// Exact solution, E, and r.h.s., f. See below for implementation.
void E_exact(const Vector &, Vector &);
void f_exact(const Vector &, Vector &);
real_t freq = 1.0, kappa;
int dim;
int main(int argc, char *argv[])
{
// 1. Parse command-line options.
const char *mesh_file = "../../data/square-nurbs.mesh";
int ref_levels = -1;
bool NURBS = true;
int order = 1;
bool static_cond = false;
bool pa = false;
const char *device_config = "cpu";
bool visualization = 1;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&ref_levels, "-r", "--refine",
"Number of times to refine the mesh uniformly, -1 for auto.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree).");
args.AddOption(&NURBS, "-n", "--nurbs", "-nn","--no-nurbs",
"NURBS.");
args.AddOption(&freq, "-f", "--frequency", "Set the frequency for the exact"
" solution.");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
"--no-partial-assembly", "Enable Partial Assembly.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
kappa = freq * M_PI;
// 2. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
device.Print();
// 3. Read the mesh from the given mesh file. We can handle triangular,
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
// the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
dim = mesh->Dimension();
int sdim = mesh->SpaceDimension();
// 4. Refine the mesh to increase the resolution. In this example we do
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
// largest number that gives a final mesh with no more than 50,000
// elements.
{
if (ref_levels < 0)
{
ref_levels =
(int)floor(log(50000./mesh->GetNE())/log(2.)/dim);
}
for (int l = 0; l < ref_levels; l++)
{
mesh->UniformRefinement();
}
}
// 5. Define a finite element space on the mesh. Here we use the
// Raviart-Thomas finite elements of the specified order.
FiniteElementCollection *fec = nullptr;
NURBSExtension *NURBSext = nullptr;
if (mesh->NURBSext && NURBS)
{
fec = new NURBS_HCurlFECollection(order,dim);
NURBSext = new NURBSExtension(mesh->NURBSext, order);
mfem::out<<"Create NURBS fec and ext"<<std::endl;
}
else
{
NURBS = false;
fec = new ND_FECollection(order, dim);
mfem::out<<"Create Normal fec"<<std::endl;
}
FiniteElementSpace *fespace = new FiniteElementSpace(mesh, NURBSext, fec);
cout << "Number of finite element unknowns: "
<< fespace->GetTrueVSize() << endl;
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
// In this example, the boundary conditions are defined by marking all
// the boundary attributes from the mesh as essential (Dirichlet) and
// converting them to a list of true dofs.
Array<int> ess_tdof_list;
if (mesh->bdr_attributes.Size())
{
Array<int> ess_bdr(mesh->bdr_attributes.Max());
ess_bdr = 1;
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
cout << "Number of knowns in essential BCs: "
<< ess_tdof_list.Size() << endl;
// 7. Set up the linear form b(.) which corresponds to the right-hand side
// of the FEM linear system, which in this case is (f,phi_i) where f is
// given by the function f_exact and phi_i are the basis functions in the
// finite element fespace.
VectorFunctionCoefficient f(sdim, f_exact);
LinearForm *b = new LinearForm(fespace);
b->AddDomainIntegrator(new VectorFEDomainLFIntegrator(f));
b->Assemble();
// 8. Define the solution vector x as a finite element grid function
// corresponding to fespace. Initialize x by projecting the exact
// solution. Note that only values from the boundary edges will be used
// when eliminating the non-homogeneous boundary condition to modify the
// r.h.s. vector b.
GridFunction x(fespace);
VectorFunctionCoefficient E(sdim, E_exact);
x.ProjectCoefficient(E);
// 9. Set up the bilinear form corresponding to the EM diffusion operator
// curl muinv curl + sigma I, by adding the curl-curl and the mass domain
// integrators.
Coefficient *muinv = new ConstantCoefficient(1.0);
Coefficient *sigma = new ConstantCoefficient(1.0);
BilinearForm *a = new BilinearForm(fespace);
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
a->AddDomainIntegrator(new CurlCurlIntegrator(*muinv));
a->AddDomainIntegrator(new VectorFEMassIntegrator(*sigma));
// 10. Assemble the bilinear form and the corresponding linear system,
// applying any necessary transformations such as: eliminating boundary
// conditions, applying conforming constraints for non-conforming AMR,
// static condensation, etc.
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
OperatorPtr A;
Vector B, X;
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
cout << "Size of linear system: " << A->Height() << endl;
// 11. Solve the linear system A X = B.
if (pa) // Jacobi preconditioning in partial assembly mode
{
OperatorJacobiSmoother M(*a, ess_tdof_list);
PCG(*A, M, B, X, 1, 1000, 1e-12, 0.0);
}
else
{
#ifndef MFEM_USE_SUITESPARSE
// 11. Define a simple symmetric Gauss-Seidel preconditioner and use it to
// solve the system Ax=b with PCG.
GSSmoother M((SparseMatrix&)(*A));
PCG(*A, M, B, X, 1, 500, 1e-12, 0.0);
#else
// 11. If MFEM was compiled with SuiteSparse, use UMFPACK to solve the
// system.
UMFPackSolver umf_solver;
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
umf_solver.SetOperator(*A);
umf_solver.Mult(B, X);
#endif
}
// 12. Recover the solution as a finite element grid function.
a->RecoverFEMSolution(X, *b, x);
// 13. Compute and print the L^2 norm of the error.
cout << "\n|| E_h - E ||_{L^2} = " << x.ComputeL2Error(E) << '\n' << endl;
// 14. Save the refined mesh and the solution. This output can be viewed
// later using GLVis: "glvis -m refined.mesh -g sol.gf".
{
ofstream mesh_ofs("refined.mesh");
mesh_ofs.precision(8);
mesh->Print(mesh_ofs);
ofstream sol_ofs("sol.gf");
sol_ofs.precision(8);
x.Save(sol_ofs);
}
// 15. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream sol_sock(vishost, visport);
sol_sock.precision(8);
sol_sock << "solution\n" << *mesh << x << flush;
}
// 16. Create output in visit format
VisItDataCollection visit_dc("Example3", mesh);
visit_dc.RegisterField("x", &x);
visit_dc.Save();
// 17. Free the used memory.
delete a;
delete sigma;
delete muinv;
delete b;
delete fespace;
delete fec;
delete mesh;
return 0;
}
void E_exact(const Vector &x, Vector &E)
{
if (dim == 3)
{
E(0) = sin(kappa * x(1));
E(1) = sin(kappa * x(2));
E(2) = sin(kappa * x(0));
}
else
{
E(0) = sin(kappa * x(1));
E(1) = sin(kappa * x(0));
if (x.Size() == 3) { E(2) = 0.0; }
}
}
void f_exact(const Vector &x, Vector &f)
{
if (dim == 3)
{
f(0) = (1. + kappa * kappa) * sin(kappa * x(1));
f(1) = (1. + kappa * kappa) * sin(kappa * x(2));
f(2) = (1. + kappa * kappa) * sin(kappa * x(0));
}
else
{
f(0) = (1. + kappa * kappa) * sin(kappa * x(1));
f(1) = (1. + kappa * kappa) * sin(kappa * x(0));
if (x.Size() == 3) { f(2) = 0.0; }
}
}
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// MFEM Example 5 -- modified for NURBS FE
//
// Compile with: make nurbs_ex5
//
// Sample runs: nurbs_ex5 -m ../../data/square-nurbs.mesh -o 3
// nurbs_ex5 -m ../../data/cube-nurbs.mesh -r 3
// nurbs_ex5 -m ../../data/pipe-nurbs-2d.mesh
// nurbs_ex5 -m ../../data/beam-tet.mesh
// nurbs_ex5 -m ../../data/beam-hex.mesh
// nurbs_ex5 -m ../../data/escher.mesh
// nurbs_ex5 -m ../../data/fichera.mesh
//
// Device sample runs -- do not work for NURBS:
// nurbs_ex5 -m ../../data/escher.mesh -pa -d cuda
// nurbs_ex5 -m ../../data/escher.mesh -pa -d raja-cuda
// nurbs_ex5 -m ../../data/escher.mesh -pa -d raja-omp
//
// Description: This example code solves a simple 2D/3D mixed Darcy problem
// corresponding to the saddle point system
//
// k*u + grad p = f
// - div u = g
//
// with natural boundary condition -p = <given pressure>.
// Here, we use a given exact solution (u,p) and compute the
// corresponding r.h.s. (f,g). We discretize with Raviart-Thomas
// finite elements (velocity u) and piecewise discontinuous
// polynomials (pressure p).
//
// NURBS-based H(div) spaces only implemented for meshes
// consisting of a single patch.
//
// The example demonstrates the use of the BlockOperator class, as
// well as the collective saving of several grid functions in
// VisIt (visit.llnl.gov) and ParaView (paraview.org) formats.
//
// We recommend viewing examples 1-4 before viewing this example.
// Sample runs: nurbs_ex3 -m ../../data/square-nurbs.mesh
// nurbs_ex3 -m ../../data/square-nurbs.mesh -o 2
// nurbs_ex3 -m ../../data/cube-nurbs.mesh
#include "mfem.hpp"
#include <fstream>
#include <iostream>
#include <algorithm>
using namespace std;
using namespace mfem;
// Define the analytical solution and forcing terms / boundary conditions
void uFun_ex(const Vector & x, Vector & u);
real_t pFun_ex(const Vector & x);
void fFun(const Vector & x, Vector & f);
real_t gFun(const Vector & x);
real_t f_natural(const Vector & x);
int main(int argc, char *argv[])
{
StopWatch chrono;
// 1. Parse command-line options.
const char *mesh_file = "../../data/square-nurbs.mesh";
int ref_levels = -1;
int order = 1;
bool pa = false;
const char *device_config = "cpu";
bool visualization = 1;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&ref_levels, "-r", "--refine",
"Number of times to refine the mesh uniformly, -1 for auto.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree).");
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
"--no-partial-assembly", "Enable Partial Assembly.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
// 2. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
device.Print();
// 3. Read the mesh from the given mesh file. We can handle triangular,
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
// the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
// 4. Refine the mesh to increase the resolution. In this example we do
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
// largest number that gives a final mesh with no more than 10,000
// elements.
{
if (ref_levels < 0)
{
ref_levels =
(int)floor(log(10000./mesh->GetNE())/log(2.)/dim);
}
for (int l = 0; l < ref_levels; l++)
{
mesh->UniformRefinement();
}
}
// 5. Define a finite element space on the mesh. Here we use the
// Raviart-Thomas finite elements of the specified order.
FiniteElementCollection *hdiv_coll = nullptr;
FiniteElementCollection *l2_coll = nullptr;
NURBSExtension *NURBSext = nullptr;
if (mesh->NURBSext && !pa)
{
hdiv_coll = new NURBS_HDivFECollection(order,dim);
l2_coll = new NURBSFECollection(order);
NURBSext = new NURBSExtension(mesh->NURBSext, order);
mfem::out<<"Create NURBS fec and ext"<<std::endl;
}
else
{
hdiv_coll = new RT_FECollection(order, dim);
l2_coll = new L2_FECollection(order, dim);
mfem::out<<"Create Normal fec"<<std::endl;
}
pa = false;
FiniteElementSpace *W_space = new FiniteElementSpace(mesh, NURBSext, l2_coll);
FiniteElementSpace *R_space = new FiniteElementSpace(mesh,
W_space->StealNURBSext(),
hdiv_coll);
// 6. Define the BlockStructure of the problem, i.e. define the array of
// offsets for each variable. The last component of the Array is the sum
// of the dimensions of each block.
Array<int> block_offsets(3); // number of variables + 1
block_offsets[0] = 0;
block_offsets[1] = R_space->GetVSize();
block_offsets[2] = W_space->GetVSize();
block_offsets.PartialSum();
std::cout << "***********************************************************\n";
std::cout << "dim(R) = " << block_offsets[1] - block_offsets[0] << "\n";
std::cout << "dim(W) = " << block_offsets[2] - block_offsets[1] << "\n";
std::cout << "dim(R+W) = " << block_offsets.Last() << "\n";
std::cout << "***********************************************************\n";
{
Array<int> ess_tdof_list;
if (mesh->bdr_attributes.Size())
{
Array<int> ess_bdr(mesh->bdr_attributes.Max());
ess_bdr = 1;
R_space->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
cout << "Number boundary dofs in H(div): "
<< ess_tdof_list.Size() << endl;
}
{
Array<int> ess_tdof_list;
if (mesh->bdr_attributes.Size())
{
Array<int> ess_bdr(mesh->bdr_attributes.Max());
ess_bdr = 1;
W_space->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
cout << "Number boundary dofs in H1: "
<< ess_tdof_list.Size() << endl;
}
// 7. Define the coefficients, analytical solution, and rhs of the PDE.
ConstantCoefficient k(1.0);
VectorFunctionCoefficient fcoeff(dim, fFun);
FunctionCoefficient fnatcoeff(f_natural);
FunctionCoefficient gcoeff(gFun);
VectorFunctionCoefficient ucoeff(dim, uFun_ex);
FunctionCoefficient pcoeff(pFun_ex);
// 8. Allocate memory (x, rhs) for the analytical solution and the right hand
// side. Define the GridFunction u,p for the finite element solution and
// linear forms fform and gform for the right hand side. The data
// allocated by x and rhs are passed as a reference to the grid functions
// (u,p) and the linear forms (fform, gform).
MemoryType mt = device.GetMemoryType();
BlockVector x(block_offsets, mt), rhs(block_offsets, mt);
LinearForm *fform(new LinearForm);
fform->Update(R_space, rhs.GetBlock(0), 0);
fform->AddDomainIntegrator(new VectorFEDomainLFIntegrator(fcoeff));
fform->AddBoundaryIntegrator(new VectorFEBoundaryFluxLFIntegrator(fnatcoeff));
fform->Assemble();
fform->SyncAliasMemory(rhs);
LinearForm *gform(new LinearForm);
gform->Update(W_space, rhs.GetBlock(1), 0);
gform->AddDomainIntegrator(new DomainLFIntegrator(gcoeff));
gform->Assemble();
gform->SyncAliasMemory(rhs);
// 9. Assemble the finite element matrices for the Darcy operator
//
// D = [ M B^T ]
// [ B 0 ]
// where:
//
// M = \int_\Omega k u_h \cdot v_h d\Omega u_h, v_h \in R_h
// B = -\int_\Omega \div u_h q_h d\Omega u_h \in R_h, q_h \in W_h
BilinearForm *mVarf(new BilinearForm(R_space));
MixedBilinearForm *bVarf(new MixedBilinearForm(R_space, W_space));
if (pa) { mVarf->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
mVarf->AddDomainIntegrator(new VectorFEMassIntegrator(k));
mVarf->Assemble();
if (!pa) { mVarf->Finalize(); }
if (pa) { bVarf->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
bVarf->AddDomainIntegrator(new VectorFEDivergenceIntegrator);
bVarf->Assemble();
if (!pa) { bVarf->Finalize(); }
BlockOperator darcyOp(block_offsets);
TransposeOperator *Bt = NULL;
if (pa)
{
Bt = new TransposeOperator(bVarf);
darcyOp.SetBlock(0,0, mVarf);
darcyOp.SetBlock(0,1, Bt, -1.0);
darcyOp.SetBlock(1,0, bVarf, -1.0);
}
else
{
SparseMatrix &M(mVarf->SpMat());
SparseMatrix &B(bVarf->SpMat());
B *= -1.;
Bt = new TransposeOperator(&B);
darcyOp.SetBlock(0,0, &M);
darcyOp.SetBlock(0,1, Bt);
darcyOp.SetBlock(1,0, &B);
}
// 10. Construct the operators for preconditioner
//
// P = [ diag(M) 0 ]
// [ 0 B diag(M)^-1 B^T ]
//
// Here we use Symmetric Gauss-Seidel to approximate the inverse of the
// pressure Schur Complement
SparseMatrix *MinvBt = NULL;
Vector Md(mVarf->Height());
BlockDiagonalPreconditioner darcyPrec(block_offsets);
Solver *invM, *invS;
SparseMatrix *S = NULL;
if (pa)
{
mVarf->AssembleDiagonal(Md);
auto Md_host = Md.HostRead();
Vector invMd(mVarf->Height());
for (int i=0; i<mVarf->Height(); ++i)
{
invMd(i) = 1.0 / Md_host[i];
}
Vector BMBt_diag(bVarf->Height());
bVarf->AssembleDiagonal_ADAt(invMd, BMBt_diag);
Array<int> ess_tdof_list; // empty
invM = new OperatorJacobiSmoother(Md, ess_tdof_list);
invS = new OperatorJacobiSmoother(BMBt_diag, ess_tdof_list);
}
else
{
SparseMatrix &M(mVarf->SpMat());
M.GetDiag(Md);
Md.HostReadWrite();
SparseMatrix &B(bVarf->SpMat());
MinvBt = Transpose(B);
for (int i = 0; i < Md.Size(); i++)
{
MinvBt->ScaleRow(i, 1./Md(i));
}
S = Mult(B, *MinvBt);
invM = new DSmoother(M);
#ifndef MFEM_USE_SUITESPARSE
invS = new GSSmoother(*S);
#else
invS = new UMFPackSolver(*S);
#endif
}
invM->iterative_mode = false;
invS->iterative_mode = false;
darcyPrec.SetDiagonalBlock(0, invM);
darcyPrec.SetDiagonalBlock(1, invS);
// 11. Solve the linear system with MINRES.
// Check the norm of the unpreconditioned residual.
int maxIter(10000);
real_t rtol(1.e-10);
real_t atol(1.e-10);
chrono.Clear();
chrono.Start();
MINRESSolver solver;
solver.SetAbsTol(atol);
solver.SetRelTol(rtol);
solver.SetMaxIter(maxIter);
solver.SetOperator(darcyOp);
solver.SetPreconditioner(darcyPrec);
solver.SetPrintLevel(1);
x = 0.0;
solver.Mult(rhs, x);
if (device.IsEnabled()) { x.HostRead(); }
chrono.Stop();
if (solver.GetConverged())
{
std::cout << "MINRES converged in " << solver.GetNumIterations()
<< " iterations with a residual norm of "
<< solver.GetFinalNorm() << ".\n";
}
else
{
std::cout << "MINRES did not converge in " << solver.GetNumIterations()
<< " iterations. Residual norm is " << solver.GetFinalNorm()
<< ".\n";
}
std::cout << "MINRES solver took " << chrono.RealTime() << "s.\n";
// 12. Create the grid functions u and p. Compute the L2 error norms.
GridFunction u, p;
u.MakeRef(R_space, x.GetBlock(0), 0);
p.MakeRef(W_space, x.GetBlock(1), 0);
int order_quad = max(2, 2*order+1);
const IntegrationRule *irs[Geometry::NumGeom];
for (int i=0; i < Geometry::NumGeom; ++i)
{
irs[i] = &(IntRules.Get(i, order_quad));
}
real_t err_u = u.ComputeL2Error(ucoeff, irs);
real_t norm_u = ComputeLpNorm(2., ucoeff, *mesh, irs);
real_t err_p = p.ComputeL2Error(pcoeff, irs);
real_t norm_p = ComputeLpNorm(2., pcoeff, *mesh, irs);
std::cout << "|| u_h - u_ex || / || u_ex || = " << err_u / norm_u << "\n";
std::cout << "|| p_h - p_ex || / || p_ex || = " << err_p / norm_p << "\n";
// 13. Save the mesh and the solution. This output can be viewed later using
// GLVis: "glvis -m ex5.mesh -g sol_u.gf" or "glvis -m ex5.mesh -g
// sol_p.gf".
{
ofstream mesh_ofs("ex5.mesh");
mesh_ofs.precision(8);
mesh->Print(mesh_ofs);
ofstream u_ofs("sol_u.gf");
u_ofs.precision(8);
u.Save(u_ofs);
ofstream p_ofs("sol_p.gf");
p_ofs.precision(8);
p.Save(p_ofs);
}
// 14. Save data in the VisIt format
VisItDataCollection visit_dc("Example5", mesh);
visit_dc.RegisterField("velocity", &u);
visit_dc.RegisterField("pressure", &p);
visit_dc.Save();
// 15. Save data in the ParaView format
ParaViewDataCollection paraview_dc("Example5", mesh);
paraview_dc.SetPrefixPath("ParaView");
paraview_dc.SetLevelsOfDetail(order);
paraview_dc.SetCycle(0);
paraview_dc.SetDataFormat(VTKFormat::BINARY);
paraview_dc.SetHighOrderOutput(true);
paraview_dc.SetTime(0.0); // set the time
paraview_dc.RegisterField("velocity",&u);
paraview_dc.RegisterField("pressure",&p);
paraview_dc.Save();
// 16. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream u_sock(vishost, visport);
u_sock.precision(8);
u_sock << "solution\n" << *mesh << u << "window_title 'Velocity'" << endl;
socketstream p_sock(vishost, visport);
p_sock.precision(8);
p_sock << "solution\n" << *mesh << p << "window_title 'Pressure'" << endl;
}
// 17. Free the used memory.
delete fform;
delete gform;
delete invM;
delete invS;
delete S;
delete Bt;
delete MinvBt;
delete mVarf;
delete bVarf;
delete W_space;
delete R_space;
delete l2_coll;
delete hdiv_coll;
delete mesh;
return 0;
}
void uFun_ex(const Vector & x, Vector & u)
{
real_t xi(x(0));
real_t yi(x(1));
real_t zi(0.0);
if (x.Size() == 3)
{
zi = x(2);
}
u(0) = - exp(xi)*sin(yi)*cos(zi);
u(1) = - exp(xi)*cos(yi)*cos(zi);
if (x.Size() == 3)
{
u(2) = exp(xi)*sin(yi)*sin(zi);
}
}
// Change if needed
real_t pFun_ex(const Vector & x)
{
real_t xi(x(0));
real_t yi(x(1));
real_t zi(0.0);
if (x.Size() == 3)
{
zi = x(2);
}
return exp(xi)*sin(yi)*cos(zi);
}
void fFun(const Vector & x, Vector & f)
{
f = 0.0;
}
real_t gFun(const Vector & x)
{
if (x.Size() == 3)
{
return -pFun_ex(x);
}
else
{
return 0;
}
}
real_t f_natural(const Vector & x)
{
return (-pFun_ex(x));
}
+2 -1
View File
@@ -153,7 +153,8 @@ int main(int argc, char *argv[])
if (patchAssembly && reducedIntegration && !pa)
{
#ifdef MFEM_USE_SINGLE
MFEM_ABORT("Reduced integration is not supported in single precision.");
cout << "Reduced integration is not supported in single precision.\n";
return MFEM_SKIP_RETURN_VALUE;
#endif
di->SetIntegrationMode(NonlinearFormIntegrator::Mode::PATCHWISE_REDUCED);
+401
View File
@@ -0,0 +1,401 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
//
// ------------------------------------------------------------
// NURBS Solenoidal Miniapp: Project solenoidal velocity
// ------------------------------------------------------------
//
//
// Compile with: make nurbs_solenoidal
//
// Sample runs: nurbs_solenoidal -m ../../data/square-nurbs.mesh -o 2
// nurbs_solenoidal -m ../../data/cube-nurbs.mesh -o 2
//
// Description: This code projects a velocity field, and forces this field
// to be solenoidal, viz. the divergence is zero. If the correct
// discrete spaces are chosen the divergence is pointwise zero.
//
// This is achieved by solving a simple 2D/3D mixed Darcy problem
// corresponding to the saddle point system (similar to ex5)
//
// u + grad p = u_ex
// - div u = 0
//
// NURBS-based H(div) spaces only implemented for meshes
// consisting of a single patch.
//
// Here, u_ex is the specified velocity field. If u_ex is
// divergence free, we expect the pressure to converge to zero.
// We discretize with H(div) and L2/H1 conforming elements.
#include "mfem.hpp"
#include <fstream>
#include <iostream>
#include <algorithm>
using namespace std;
using namespace mfem;
void u_2d(const Vector & x, Vector & u)
{
real_t xi(x(0));
real_t yi(x(1));
int p = 4;
u(0) = pow(xi,p + 1)*pow(yi,p );
u(1) = -pow(xi,p )*pow(yi,p + 1);
}
void u_3d(const Vector & x, Vector & u)
{
real_t xi(x(0));
real_t yi(x(1));
real_t zi(x(2));
int p = 4;
real_t cx = 3.0/4.0;
real_t cy = 2.0/3.0;
real_t cz = -cx - cy;
u(0) = cx*pow(xi,p + 1)*pow(yi,p )*pow(zi,p );
u(1) = cy*pow(xi,p )*pow(yi,p + 1)*pow(zi,p );
u(2) = cz*pow(xi,p )*pow(yi,p )*pow(zi,p + 1);
}
// Define the analytical solution and forcing terms / boundary conditions
void u_ex(const Vector & x, Vector & u)
{
if (x.Size() == 2)
{
u_2d(x, u);
}
else if (x.Size() == 3)
{
u_3d(x, u);
}
}
int main(int argc, char *argv[])
{
StopWatch chrono;
// 1. Parse command-line options.
const char *mesh_file = "../../data/square-nurbs.mesh";
int ref_levels = -1;
int order = 1;
const char *device_config = "cpu";
bool visualization = 1;
bool NURBS = true;
bool div_free = true;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&ref_levels, "-r", "--refine",
"Number of times to refine the mesh uniformly, -1 for auto.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree).");
args.AddOption(&div_free, "-df", "--div-free", "-p","--proj",
"Div-free or standard projection.");
args.AddOption(&NURBS, "-n", "--nurbs", "-nn","--no-nurbs",
"NURBS.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(mfem::out);
return 1;
}
args.PrintOptions(mfem::out);
// 2. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
device.Print();
// 3. Read the mesh from the given mesh file. We can handle triangular,
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
// the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
// 4. Refine the mesh to increase the resolution. In this example we do
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
// largest number that gives a final mesh with no more than 10,000
// elements.
{
if (ref_levels < 0)
{
ref_levels =
(int)floor(log(5000./mesh->GetNE())/log(2.)/dim);
}
for (int l = 0; l < ref_levels; l++)
{
mesh->UniformRefinement();
}
}
// 5. Define a finite element space on the mesh. Here we use the
// Raviart-Thomas finite elements of the specified order.
FiniteElementCollection *hdiv_coll = nullptr;
FiniteElementCollection *l2_coll = nullptr;
NURBSExtension *NURBSext = nullptr;
if (mesh->NURBSext&& NURBS)
{
hdiv_coll = new NURBS_HDivFECollection(order, dim);
l2_coll = new NURBSFECollection(order);
NURBSext = new NURBSExtension(mesh->NURBSext, order);
mfem::out<<"Create NURBS fec and ext"<<std::endl;
}
else
{
NURBS = false;
hdiv_coll = new RT_FECollection(order, dim);
l2_coll = new L2_FECollection(order, dim);
mfem::out<<"Create Normal fec"<<std::endl;
}
FiniteElementSpace *W_space = new FiniteElementSpace(mesh, NURBSext, l2_coll);
FiniteElementSpace *R_space = new FiniteElementSpace(mesh,
W_space->StealNURBSext(),
hdiv_coll);
// 6. Define the BlockStructure of the problem, i.e. define the array of
// offsets for each variable. The last component of the Array is the sum
// of the dimensions of each block.
Array<int> block_offsets(3); // number of variables + 1
block_offsets[0] = 0;
block_offsets[1] = R_space->GetVSize();
block_offsets[2] = W_space->GetVSize();
block_offsets.PartialSum();
mfem::out << "***********************************************************\n";
mfem::out << "dim(R) = " << block_offsets[1] - block_offsets[0] << "\n";
mfem::out << "dim(W) = " << block_offsets[2] - block_offsets[1] << "\n";
mfem::out << "dim(R+W) = " << block_offsets.Last() << "\n";
mfem::out << "***********************************************************\n";
// 7. Define the coefficients, analytical solution, and rhs of the PDE.
ConstantCoefficient one(1.0);
ConstantCoefficient zero(0.0);
VectorFunctionCoefficient ucoeff(dim, u_ex);
// 8. Allocate memory (x, rhs) for the analytical solution and the right hand
// side. Define the GridFunction u,p for the finite element solution and
// linear forms fform and gform for the right hand side. The data
// allocated by x and rhs are passed as a reference to the grid functions
// (u,p) and the linear forms (fform, gform).
MemoryType mt = device.GetMemoryType();
BlockVector x(block_offsets, mt), rhs(block_offsets, mt);
rhs = 0.0;
LinearForm *fform(new LinearForm);
fform->Update(R_space, rhs.GetBlock(0), 0);
fform->AddDomainIntegrator(new VectorFEDomainLFIntegrator(ucoeff));
fform->Assemble();
fform->SyncAliasMemory(rhs);
// 9. Assemble the finite element matrices for the Darcy operator
//
// D = [ M B^T ]
// [ B 0 ]
// where:
//
// M = \int_\Omega k u_h \cdot v_h d\Omega u_h, v_h \in R_h
// B = -\int_\Omega \div u_h q_h d\Omega u_h \in R_h, q_h \in W_h
BilinearForm *mVarf(new BilinearForm(R_space));
MixedBilinearForm *bVarf(new MixedBilinearForm(R_space, W_space));
mVarf->AddDomainIntegrator(new VectorFEMassIntegrator(one));
mVarf->Assemble();
mVarf->Finalize();
bVarf->AddDomainIntegrator(new VectorFEDivergenceIntegrator);
bVarf->Assemble();
bVarf->Finalize();
SparseMatrix &M(mVarf->SpMat());
SparseMatrix &B(bVarf->SpMat());
B *= -1.;
TransposeOperator *Bt = new TransposeOperator(&B);
BlockOperator darcyOp(block_offsets);
darcyOp.SetBlock(0,0, &M);
if (div_free) { darcyOp.SetBlock(0,1, Bt); }
if (div_free) { darcyOp.SetBlock(1,0, &B); }
// 10. Construct the operators for preconditioner
//
// P = [ diag(M) 0 ]
// [ 0 B diag(M)^-1 B^T ]
//
// Here we use Symmetric Gauss-Seidel to approximate the inverse of the
// pressure Schur Complement
Vector Md(mVarf->Height());
M.GetDiag(Md);
Md.HostReadWrite();
SparseMatrix *MinvBt = Transpose(B);
for (int i = 0; i < Md.Size(); i++)
{
MinvBt->ScaleRow(i, 1./Md(i));
}
SparseMatrix *S = Mult(B, *MinvBt);
Solver *invS;
#ifndef MFEM_USE_SUITESPARSE
invS = new GSSmoother(*S);
#else
invS = new UMFPackSolver(*S);
#endif
invS->iterative_mode = false;
Solver *invM = new GSSmoother(M);
invM->iterative_mode = false;
BlockDiagonalPreconditioner darcyPrec(block_offsets);
darcyPrec.SetDiagonalBlock(0, invM);
darcyPrec.SetDiagonalBlock(1, invS);
// 11. Solve the linear system with MINRES.
// Check the norm of the unpreconditioned residual.
int maxIter(10000);
real_t rtol(10*std::numeric_limits<real_t>::epsilon());
real_t atol(10*std::numeric_limits<real_t>::epsilon());
chrono.Clear();
chrono.Start();
MINRESSolver solver;
solver.SetAbsTol(atol);
solver.SetRelTol(rtol);
solver.SetMaxIter(maxIter);
solver.SetOperator(darcyOp);
solver.SetPreconditioner(darcyPrec);
solver.SetPrintLevel(2);
x = 0.0;
solver.Mult(rhs, x);
if (device.IsEnabled()) { x.HostRead(); }
chrono.Stop();
if (solver.GetConverged())
{
mfem::out << "MINRES converged in " << solver.GetNumIterations()
<< " iterations with a residual norm of "
<< solver.GetFinalNorm() << ".\n";
}
else
{
mfem::out << "MINRES did not converge in " << solver.GetNumIterations()
<< " iterations. Residual norm is " << solver.GetFinalNorm()
<< ".\n";
}
mfem::out << "MINRES solver took " << chrono.RealTime() << "s.\n";
// 12. Create the grid functions u and p
GridFunction u, p, uu, vv, ww;
u.MakeRef(R_space, x.GetBlock(0), 0);
p.MakeRef(W_space, x.GetBlock(1), 0);
// 13. Save the mesh and the solution. This output can be viewed later using
// GLVis: "glvis -m exsol.mesh -g sol_u.gf" or "glvis -m exsol.mesh -g
// sol_p.gf".
{
ofstream mesh_ofs("exsol.mesh");
mesh_ofs.precision(8);
mesh->Print(mesh_ofs);
ofstream u_ofs("sol_u.gf");
u_ofs.precision(8);
u.Save(u_ofs);
ofstream p_ofs("sol_p.gf");
p_ofs.precision(8);
p.Save(p_ofs);
}
// 14. Save data in the VisIt format
VisItDataCollection visit_dc("Solenoidal", mesh);
visit_dc.RegisterField("velocity", &u);
visit_dc.RegisterField("pressure", &p);
visit_dc.Save();
// 15. Save data in the ParaView format
ParaViewDataCollection paraview_dc("Solenoidal", mesh);
paraview_dc.SetPrefixPath("ParaView");
paraview_dc.SetLevelsOfDetail(order);
paraview_dc.SetCycle(0);
paraview_dc.SetDataFormat(VTKFormat::BINARY);
paraview_dc.SetHighOrderOutput(true);
paraview_dc.SetTime(0.0); // set the time
paraview_dc.RegisterField("velocity",&u);
paraview_dc.RegisterField("pressure",&p);
paraview_dc.Save();
// 16. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream u_sock(vishost, visport);
u_sock.precision(8);
u_sock << "solution\n" << *mesh << u << "window_title 'Velocity'" << endl;
socketstream p_sock(vishost, visport);
p_sock.precision(8);
p_sock << "solution\n" << *mesh << p << "window_title 'Pressure'" << endl;
}
// 17. Compute errors
int order_quad = 2*order+2;
const IntegrationRule *irs[Geometry::NumGeom];
for (int i=0; i < Geometry::NumGeom; ++i)
{
irs[i] = &(IntRules.Get(i, order_quad));
}
real_t err_u = u.ComputeL2Error(ucoeff, irs);
real_t err_p = p.ComputeL2Error(zero, irs);
real_t err_div = u.ComputeDivError(&zero, irs);
mfem::out << "|| u_h - u_ex || = " << err_u << "\n";
mfem::out << "|| div u_h - div u_ex || = " << err_div << "\n";
mfem::out << "|| p_h - p_ex || = " << err_p << "\n";
// 18. Free the used memory.
delete fform;
delete invM;
delete invS;
delete S;
delete Bt;
delete MinvBt;
delete mVarf;
delete bVarf;
delete W_space;
delete R_space;
delete l2_coll;
delete hdiv_coll;
delete mesh;
if (err_div > 1e4*std::numeric_limits<real_t>::epsilon() )
{
mfem::out << "std::numeric_limits<real_t>::epsilon() = "
<< std::numeric_limits<real_t>::epsilon() << "\n";
mfem_error("Divergence error larger than expected");
}
return 0;
}
+2
View File
@@ -56,6 +56,7 @@ set(UNIT_TESTS_SRCS
mesh/test_submesh.cpp
mesh/test_vtu.cpp
mesh/test_nurbs.cpp
mesh/test_exodus_writer.cpp
fem/test_1d_bilininteg.cpp
fem/test_2d_bilininteg.cpp
fem/test_3d_bilininteg.cpp
@@ -85,6 +86,7 @@ set(UNIT_TESTS_SRCS
fem/test_get_value.cpp
fem/test_getderivative.cpp
fem/test_getgradient.cpp
fem/test_gslib.cpp
fem/test_intrules.cpp
fem/test_intruletypes.cpp
fem/test_inversetransform.cpp
+119 -1
View File
@@ -369,6 +369,124 @@ TEST_CASE("GSLIBInterpolateL2ElementBoundary",
}
#ifdef MFEM_USE_MPI
// Custom interpolation procedure with gslib
TEST_CASE("GSLIBCustomInterpolation",
"[GSLIBCustomInterpolation][Parallel][GSLIB]")
{
int myid;
MPI_Comm_rank(MPI_COMM_WORLD, &myid);
int dim = GENERATE(2, 3);
bool simplex = GENERATE(true, false);
CAPTURE(dim, simplex);
int nex = 4;
int mesh_order = 2;
Mesh mesh;
if (dim == 2)
{
Element::Type type = simplex ? Element::TRIANGLE : Element::QUADRILATERAL;
mesh = Mesh::MakeCartesian2D(nex, nex, type);
}
else
{
Element::Type type = simplex ? Element::TETRAHEDRON : Element::HEXAHEDRON;
mesh = Mesh::MakeCartesian3D(nex, nex, nex, type);
}
mesh.SetCurvature(mesh_order);
ParMesh pmesh(MPI_COMM_WORLD, mesh);
// f(x,y,z) = x^2 + y^2 + z^2
auto func = [](const Vector &x)
{
const int dim = x.Size();
double res = 0.0;
for (int d = 0; d < dim; d++) { res += std::pow(x(d), 2); }
return res;
};
// \nabla f(x,y,z) = [2*x,2*y,2*z]
auto func_grad = [](const Vector &x, Vector &p)
{
const int dim = x.Size();
p.SetSize(dim);
for (int d = 0; d < dim; d++) { p(d) = 2.0*x(d); }
};
// Set GridFunction to be interpolated
int func_order = 3;
H1_FECollection c_fec(func_order, dim);
FiniteElementSpace c_fespace(&pmesh, &c_fec, 1);
GridFunction field_vals(&c_fespace);
FunctionCoefficient f(func);
field_vals.ProjectCoefficient(f);
// Generate randomized points in [0, 1]^D. Assume ordering by VDIM.
int npt = 101;
Vector xyz(npt*dim);
xyz.Randomize(myid + 1);
// Find points on the ParMesh
Vector interp_vals(npt);
FindPointsGSLIB finder;
finder.Setup(pmesh);
finder.FindPoints(xyz, Ordering::byVDIM);
/** Interpolate gradient using custom interpolation procedure. */
// We first send information to MPI ranks that own the element corresponding
// to each point.
Array<unsigned int> recv_elem, recv_code;
Vector recv_rst;
finder.DistributePointInfoToOwningMPIRanks(recv_elem, recv_rst, recv_code);
int npt_recv = recv_elem.Size();
// Compute gradient locally
Vector grad(npt_recv*dim);
for (int i = 0; i < npt_recv; i++)
{
const int e = recv_elem[i];
IntegrationPoint ip;
if (dim == 2)
{
ip.Set2(recv_rst(dim*i + 0),recv_rst(dim*i + 1));
}
else
{
ip.Set3(recv_rst(dim*i + 0),recv_rst(dim*i + 1),
recv_rst(dim*i + 2));
}
ElementTransformation *Tr = c_fespace.GetElementTransformation(e);
Tr->SetIntPoint(&ip);
Vector gradloc(grad.GetData()+i*dim,dim);
field_vals.GetGradient(*Tr, gradloc);
}
// Send the computed gradient back to the ranks that requested it.
Vector recv_grad;
finder.DistributeInterpolatedValues(grad, dim, Ordering::byVDIM, recv_grad);
// Check if the received gradient matched analytic gradient.
for (int i = 0; i < npt && myid == 0; i++)
{
Vector x(xyz.GetData()+i*dim,dim);
Vector grad_exact(dim);
func_grad(x, grad_exact);
Vector recv_grad_i(recv_grad.GetData()+i*dim,dim);
for (int d = 0; d < dim; d++)
{
REQUIRE(grad_exact(d) == Approx(recv_grad(i*dim + d)));
}
}
finder.FreeData();
}
TEST_CASE("GSLIBGSOP", "[GSLIBGSOP][Parallel][GSLIB]")
{
int myid;
@@ -434,7 +552,7 @@ TEST_CASE("GSLIBGSOP", "[GSLIBGSOP][Parallel][GSLIB]")
REQUIRE(vals(i) < 0);
}
}
#endif
#endif // MFEM_USE_MPI
} //namespace_gslib
#endif
+298
View File
@@ -0,0 +1,298 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "unit_tests.hpp"
#include "mfem.hpp"
using namespace mfem;
namespace hptransfer_test
{
int order=1;
double u(const Vector & x)
{
return pow(x.Sum(),order);
}
void vecu(const Vector & x, Vector & U)
{
for (int i = 0; i<x.Size(); i++)
{
U[i] = pow(x[i], order);
}
}
void RandomPRefinement(FiniteElementSpace & fes)
{
Mesh *mesh = fes.GetMesh();
for (int i = 0; i < mesh->GetNE(); i++)
{
if ((double) rand() / RAND_MAX < 0.5)
{
const int eorder = fes.GetElementOrder(i);
fes.SetElementOrder(i,eorder+1);
}
}
fes.Update(false);
}
/* This function randomly selects elements to be de-refined and sets the
order of the elements that share the same parent to their minimum */
void PreprocessRandomDerefinement(FiniteElementSpace & fes, Array<int> &drefs,
double prob=0.5)
{
Mesh * mesh = fes.GetMesh();
const Table & dereftable = mesh->ncmesh->GetDerefinementTable();
int dref = dereftable.Size();
for (int i = 0; i < dref; i++)
{
if ((double) rand() / RAND_MAX < prob)
{
drefs.Append(i);
}
}
// Go through the possible derefinements and set the orders to minimum
Array<int> row;
for (int i = 0; i<drefs.Size(); i++)
{
dereftable.GetRow(drefs[i], row);
int minorder = 100;
for (int j = 0; j<row.Size(); j++)
{
minorder = std::min(minorder, fes.GetElementOrder(row[j]));
}
// set the min order
for (int j = 0; j<row.Size(); j++)
{
fes.SetElementOrder(row[j],minorder);
}
}
fes.Update(false);
}
void Derefine(Mesh &mesh, const Array<int> &drefs)
{
const Table & dereftable = mesh.ncmesh->GetDerefinementTable();
Array<int> row;
Vector errors(mesh.GetNE()); errors = infinity();
for (int i = 0; i<drefs.Size(); i++)
{
dereftable.GetRow(drefs[i], row);
for (int j = 0; j<row.Size(); j++)
{
errors[row[j]] = 0.0;
}
}
mesh.DerefineByError(errors,1.0);
}
enum class Space {H1, L2, VectorH1, VectorL2};
TEST_CASE("hpTransfer", "[hpTransfer]")
{
auto space = GENERATE(Space::H1, Space::L2, Space::VectorH1, Space::VectorL2);
int dim = GENERATE(2,3);
auto simplex = GENERATE(false, true);
order = GENERATE(1,2);
auto relax_conformity = GENERATE(false, true);
/* No need to distinguish between relaxed and full conformity in the DG case*/
if ((space == Space::L2 || space == Space::VectorL2) && relax_conformity) { return; }
constexpr int ne = 3;
CAPTURE(space, dim, simplex, order, relax_conformity);
Mesh mesh;
if (dim == 2)
{
Element::Type type = simplex ? Element::TRIANGLE : Element::QUADRILATERAL;
mesh = Mesh::MakeCartesian2D(ne, ne, type, 1, 1.0, 1.0);
}
else
{
Element::Type type = simplex ? Element::TETRAHEDRON : Element::HEXAHEDRON;
mesh = Mesh::MakeCartesian3D(ne, ne, ne, type, 1.0, 1.0, 1.0);
}
mesh.EnsureNCMesh(true);
// 1. Set up initial state by randomly h- and p- refinement
mesh.RandomRefinement(0.5);
FiniteElementCollection * fec = nullptr;
if (space == Space::H1 || space == Space::VectorH1)
{
fec = new H1_FECollection(order, dim);
}
else
{
fec = new L2_FECollection(order, dim);
}
int dimc = (space<=Space::L2) ? 1 : dim;
FiniteElementSpace fes(&mesh, fec, dimc);
fes.SetRelaxedHpConformity(relax_conformity);
RandomPRefinement(fes);
// 2. Set up a GridFunction on the initial hp-mesh
FunctionCoefficient f(u);
VectorFunctionCoefficient vf(dim,vecu);
GridFunction gf(&fes); gf = 0.0;
if (space<=Space::L2)
{
gf.ProjectCoefficient(f);
}
else
{
gf.ProjectCoefficient(vf);
}
// 3. Randomly h-refine the mesh and transfer the GridFunction
mesh.RandomRefinement(0.5);
fes.Update();
gf.Update();
GridFunction err_gf(&fes);
if (space<=Space::L2)
{
err_gf.ProjectCoefficient(f);
}
else
{
err_gf.ProjectCoefficient(vf);
}
err_gf-= gf;
if (fes.GetHpRestrictionMatrix())
{
Vector tmp0(fes.GetHpRestrictionMatrix()->Height());
fes.GetHpRestrictionMatrix()->Mult(err_gf,tmp0);
fes.GetProlongationMatrix()->Mult(tmp0,err_gf);
}
// 3a. Check if the prolonged GridFunction to the h-refined
// mesh exactly reproduces the polynomial GridFunction
REQUIRE(err_gf.Norml2() < 1e-11);
// 4. Randomly p-refine the mesh and transfer the GridFunction
Mesh cmesh(mesh);
FiniteElementSpace cfes(&cmesh, fec, dimc);
cfes.SetRelaxedHpConformity(relax_conformity);
for (int i = 0; i<cmesh.GetNE(); i++)
{
cfes.SetElementOrder(i,fes.GetElementOrder(i));
}
cfes.Update(false);
RandomPRefinement(fes);
PRefinementTransferOperator T(cfes, fes);
GridFunction hpgf(&fes);
T.Mult(gf,hpgf);
err_gf.SetSpace(&fes);
if (space<=Space::L2)
{
err_gf.ProjectCoefficient(f);
}
else
{
err_gf.ProjectCoefficient(vf);
}
err_gf-= hpgf;
if (fes.GetHpRestrictionMatrix())
{
Vector tmp(fes.GetHpRestrictionMatrix()->Height());
fes.GetHpRestrictionMatrix()->Mult(err_gf,tmp);
fes.GetProlongationMatrix()->Mult(tmp,err_gf);
}
// 4a. Check if the prolonged GridFunction to the p-refined
// mesh exactly reproduces the polynomial GridFunction
REQUIRE(err_gf.Norml2() < 1e-11);
// 5. Before randomly de-refining the mesh ensure that the elements
// (of the same parent) that are going to be de-refined
// have the same order
Mesh fmesh(mesh);
FiniteElementSpace ffes(&fmesh, fec, dimc);
ffes.SetRelaxedHpConformity(relax_conformity);
for (int i = 0; i<fmesh.GetNE(); i++)
{
ffes.SetElementOrder(i,fes.GetElementOrder(i));
}
ffes.Update(false);
Array<int> drefs;
// lower the order of the children to their minimum
PreprocessRandomDerefinement(fes, drefs);
PRefinementTransferOperator T2(ffes, fes);
gf.SetSpace(&fes);
T2.Mult(hpgf, gf);
err_gf.SetSpace(&fes);
if (space<=Space::L2)
{
err_gf.ProjectCoefficient(f);
}
else
{
err_gf.ProjectCoefficient(vf);
}
err_gf-= gf;
if (fes.GetHpRestrictionMatrix())
{
Vector temp(fes.GetHpRestrictionMatrix()->Height());
fes.GetHpRestrictionMatrix()->Mult(err_gf,temp);
fes.GetProlongationMatrix()->Mult(temp,err_gf);
}
// 5a. Check if the restricted GridFunction to the p-derefined
// mesh exactly reproduces the polynomial GridFunction
REQUIRE(err_gf.Norml2() < 1e-11);
// 6. De-refine the mesh and transfer the GridFunction
Derefine(mesh,drefs);
fes.Update();
gf.Update();
err_gf.SetSpace(&fes); err_gf = 0.0;
if (space<=Space::L2)
{
err_gf.ProjectCoefficient(f);
}
else
{
err_gf.ProjectCoefficient(vf);
}
err_gf-= gf;
if (fes.GetHpRestrictionMatrix())
{
Vector temp(fes.GetHpRestrictionMatrix()->Height());
fes.GetHpRestrictionMatrix()->Mult(err_gf,temp);
fes.GetProlongationMatrix()->Mult(temp,err_gf);
}
// 6a. Check if the restricted GridFunction to the de-refined
// mesh exactly reproduces the polynomial GridFunction
REQUIRE(err_gf.Norml2() < 1e-11);
delete fec;
}
}
+4 -1
View File
@@ -18,12 +18,13 @@
#include <unistd.h>
#include <stdio.h>
#include "umpire/Umpire.hpp"
#include <umpire/strategy/QuickPool.hpp>
#ifdef MFEM_USE_CUDA
#include <cuda.h>
constexpr const char * device_name = "cuda";
#elif defined(MFEM_USE_HIP)
constexpr const char * device_name = "raja-hip";
constexpr const char * device_name = "hip";
#endif
using namespace mfem;
@@ -45,10 +46,12 @@ static bool is_pinned_host(void * h_p)
unsigned flags;
#ifdef MFEM_USE_CUDA
auto err = cudaHostGetFlags(&flags, h_p);
cudaGetLastError(); // also resets last error
if (err == cudaSuccess) { return true; }
else if (err == cudaErrorInvalidValue) { return false; }
#elif defined(MFEM_USE_HIP)
auto err = hipHostGetFlags(&flags, h_p);
hipGetLastError(); // also resets last error
if (err == hipSuccess) { return true; }
else if (err == hipErrorInvalidValue) { return false; }
#endif
+129
View File
@@ -0,0 +1,129 @@
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "mfem.hpp"
#include "unit_tests.hpp"
using namespace mfem;
#ifdef MFEM_USE_NETCDF
static void CompareMeshes(Mesh &mesh1, Mesh &mesh2)
{
REQUIRE(mesh1.GetNE() == mesh2.GetNE());
REQUIRE(mesh1.GetNV() == mesh2.GetNV());
REQUIRE(mesh1.GetNBE() == mesh2.GetNBE());
REQUIRE(mesh1.GetNFaces() == mesh2.GetNFaces());
const FiniteElementSpace *fespace1 = mesh1.GetNodalFESpace();
const FiniteElementSpace *fespace2 = mesh2.GetNodalFESpace();
// Check elements.
Array<int> element_faces1, element_faces2;
Array<int> element_orient1, element_orient2;
Array<int> dofs1, dofs2;
for (int ielement = 0; ielement < mesh1.GetNE(); ielement++)
{
int attr1 = mesh1.GetAttribute(ielement);
int attr2 = mesh2.GetAttribute(ielement);
REQUIRE(attr1 == attr2);
Element::Type type1 = mesh1.GetElementType(ielement);
Element::Type type2 = mesh2.GetElementType(ielement);
REQUIRE(type1 == type2);
mesh1.GetElementFaces(ielement, element_faces1, element_orient1);
mesh2.GetElementFaces(ielement, element_faces2, element_orient2);
REQUIRE(element_faces1 == element_faces2);
REQUIRE(element_orient1 == element_orient2);
if (fespace1 && fespace2)
{
fespace1->GetElementDofs(ielement, dofs1);
fespace2->GetElementDofs(ielement, dofs2);
}
else
{
mesh1.GetElementVertices(ielement, dofs1);
mesh2.GetElementVertices(ielement, dofs2);
}
REQUIRE(dofs1 == dofs2);
}
// Check bdr elements.
for (int ibdr_element = 0; ibdr_element < mesh1.GetNBE(); ibdr_element++)
{
int attr1 = mesh1.GetBdrAttribute(ibdr_element);
int attr2 = mesh2.GetBdrAttribute(ibdr_element);
REQUIRE(attr1 == attr2);
Element::Type type1 = mesh1.GetBdrElementType(ibdr_element);
Element::Type type2 = mesh2.GetBdrElementType(ibdr_element);
REQUIRE(type1 == type2);
int face_index1 = mesh1.GetBdrElementFaceIndex(ibdr_element);
int face_index2 = mesh2.GetBdrElementFaceIndex(ibdr_element);
REQUIRE(face_index1 == face_index2);
}
// Check face vertices.
Array<int> face_vertices1, face_vertices2;
for (int iface_index = 0; iface_index < mesh1.GetNFaces(); iface_index++)
{
mesh1.GetFaceVertices(iface_index, face_vertices1);
mesh2.GetFaceVertices(iface_index, face_vertices2);
REQUIRE(face_vertices1 == face_vertices2);
}
}
#endif
TEST_CASE("ExodusII Writer", "[Mesh][ExodusII][MFEMData]")
{
#ifdef MFEM_USE_NETCDF
// NB: wedge, pyramid and mixed mesh tests require the ExodusII reader PR
// to be merged. Pyramid14 tests require the pyramid-dev branch to be merged.
auto filename = GENERATE("simple-cube-hex8.e",
"simple-cube-hex27.e",
"simple-cube-tet4.e",
"simple-cube-tet10.e"//,
// "simple-cube-wedge6.e",
// "simple-cube-wedge18.e",
// "simple-cube-pyramid5.e",
// "simple-cube-pyramid14.e",
// "simple-cube-multi-element-order1.e",
// "simple-cube-multi-element-order2.e"
);
// Load Exodus II mesh from file. NB: do NOT refine as this changes vertex ordering!
Mesh original_mesh = Mesh::LoadFromFile(mfem_data_dir + "/exodusii/" + filename,
0, 0, true);
// Write generated Exodus II mesh to file.
std::string filename_generated = "generated-mesh.e";
original_mesh.PrintExodusII(filename_generated);
// Load generated Exodus II mesh.
Mesh generated_mesh = Mesh::LoadFromFile(filename_generated, 0, 0, true);
CompareMeshes(original_mesh, generated_mesh);
// Remove temporary file.
REQUIRE(remove(filename_generated.c_str()) == 0);
#endif
}