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Author SHA1 Message Date
blaz af84ca1ef5 wip 2021-07-10 10:33:09 -07:00
blaz c8a8562ea4 modification and examples 2021-07-02 11:21:48 -07:00
blaz a32ca0cb89 Another Lambda example 2021-05-26 15:53:39 -07:00
blaz 2e92b44070 Lambda function differentiation 2021-05-26 15:11:05 -07:00
blaz 2aa374efe8 Example of auto diff 2021-05-25 21:00:57 -07:00
blaz 476e642935 added cmake and make files for Eigen and CoDiPack 2021-05-25 17:53:33 -07:00
blaz 0da14179f7 initial copy frm fadg branch 2021-05-25 16:38:32 -07:00
319 changed files with 15396 additions and 24919 deletions
+31 -58
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@@ -12,15 +12,6 @@
# In this CI section, we build different variants of mfem and run test on them.
name: builds-and-tests
# Github actions can use the default "GITHUB_TOKEN". By default, this token
# is set to have permissive access. However, this is not a good practice
# security-wise. Here we use an external action, so we restrict the
# permission to the minimum required.
# When the 'permissions' is set, all the scopes not mentioned are set to the
# most restrictive setting. So the following is enough.
permissions:
actions: write
on:
push:
branches:
@@ -47,47 +38,30 @@ jobs:
strategy:
matrix:
os: [ubuntu-18.04, macos-10.15]
target: [dbg, opt]
mpi: [seq, par]
target: [debug, optim]
mpi: [sequential, parallel]
build-system: [make]
hypre-target: [int32]
# 'include' allows us to:
# - Add a variable to all jobs without creating a new matrix dimension.
# Codecov is defined that way.
# - Add a new combination.
# 'build-system: cmake' and 'hypre-target: int64'
# 'include' allows us to
# - add a variable without creating a new matrix dimension.
# - add a new combination ('build-system: cmake' case here)
#
# note: we will gather coverage info for any non-debug run except the
# CMake build.
include:
- target: dbg
- target: debug
codecov: NO
- target: opt
- target: optim
codecov: YES
- os: ubuntu-18.04
target: opt
target: optim
codecov: NO
mpi: par
mpi: parallel
build-system: cmake
hypre-target: int32
- os: ubuntu-18.04
target: opt
codecov: NO
mpi: par
build-system: make
hypre-target: int64
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
name: ${{ matrix.os }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.build-system }}
runs-on: ${{ matrix.os }}
steps:
# This external action allows to interrupt a workflow already running on
# the same branch to save resource
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.9.0
with:
access_token: ${{ github.token }}
# Checkout MFEM in "mfem" subdirectory. Final path:
# /home/runner/work/mfem/mfem/mfem
# Note: Done now to access "install-hypre" and "install-metis" actions.
@@ -102,7 +76,7 @@ jobs:
# TODO: It would be nice to have only one step, e.g. with a dedicated
# action, but I (@adrienbernede) don't see how at the moment.
- name: get MPI (Linux)
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-18.04'
if: matrix.mpi == 'parallel' && matrix.os == 'ubuntu-18.04'
run: |
sudo apt-get install mpich libmpich-dev
export MAKE_CXX_FLAG="MPICXX=mpic++"
@@ -113,11 +87,11 @@ jobs:
sudo apt-get install lcov
- name: Set up Homebrew
if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-10.15'
if: ( matrix.mpi == 'parallel' || matrix.codecov == 'YES' ) && matrix.os == 'macos-10.15'
uses: Homebrew/actions/setup-homebrew@c4aafe8c4620bf08883dd4679c374f11e73329d3
- name: get MPI (MacOS)
if: matrix.mpi == 'par' && matrix.os == 'macos-10.15'
if: matrix.mpi == 'parallel' && matrix.os == 'macos-10.15'
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew install openmpi
@@ -133,40 +107,39 @@ jobs:
# Install will only run on cache miss.
- name: cache hypre
id: hypre-cache
if: matrix.mpi == 'par'
if: matrix.mpi == 'parallel'
uses: actions/cache@v2
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.0
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2
- name: get hypre
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.0
if: matrix.mpi == 'parallel' && steps.hypre-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v1.0
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: ${{ matrix.hypre-target }}
hypre-archive: ${{ env.HYPRE_ARCHIVE }}
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
# Get Metis through cache, or build it.
# Install will only run on cache miss.
- name: cache metis
id: metis-cache
if: matrix.mpi == 'par'
if: matrix.mpi == 'parallel'
uses: actions/cache@v2
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.0
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2
- name: install metis
if: matrix.mpi == 'par' && steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.0
if: matrix.mpi == 'parallel' && steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v1.0
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
metis-archive: ${{ env.METIS_ARCHIVE }}
metis-dir: ${{ env.METIS_TOP_DIR }}
# MFEM build and test
- name: build
uses: mfem/github-actions/build-mfem@v2.0
uses: mfem/github-actions/build-mfem@v1.0
with:
os: ${{ matrix.os }}
target: ${{ matrix.target }}
@@ -179,17 +152,17 @@ jobs:
# Run checks (and only checks) on debug targets
- name: checks
if: matrix.build-system == 'make' && matrix.target == 'dbg'
if: matrix.build-system == 'make' && matrix.target == 'debug'
run: |
cd ${{ env.MFEM_TOP_DIR }} && make check
- name: unit tests
if: matrix.build-system == 'make' && matrix.target == 'opt'
if: matrix.build-system == 'make' && matrix.target == 'optim'
run: |
cd ${{ env.MFEM_TOP_DIR }} && make unittest
- name: tests
if: matrix.build-system == 'make' && matrix.target == 'opt'
if: matrix.build-system == 'make' && matrix.target == 'optim'
run: |
cd ${{ env.MFEM_TOP_DIR }} && make test
@@ -201,8 +174,8 @@ jobs:
# Code coverage (process and upload reports)
- name: codecov
if: matrix.codecov == 'YES'
uses: mfem/github-actions/upload-coverage@v2.0
uses: mfem/github-actions/upload-coverage@v1.0
with:
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
name: ${{ matrix.os }}-${{ matrix.mpi }}
project_dir: ${{ env.MFEM_TOP_DIR }}
directories: "fem general linalg mesh"
+9 -18
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@@ -11,9 +11,6 @@
name: build-analysis
permissions:
actions: write
on:
push:
branches:
@@ -33,11 +30,6 @@ jobs:
runs-on: ubuntu-18.04
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.9.0
with:
access_token: ${{ github.token }}
- name: checkout MFEM
uses: actions/checkout@v2
with:
@@ -53,33 +45,32 @@ jobs:
uses: actions/cache@v2
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.0
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2
- name: Get Hypre
if: steps.hypre-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.0
uses: mfem/github-actions/build-hypre@master
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: int32
hypre-archive: ${{ env.HYPRE_ARCHIVE }}
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
- name: Cache Metis Install
id: metis-cache
uses: actions/cache@v2
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.0
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2
- name: Install Metis
if: steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.0
uses: mfem/github-actions/build-metis@master
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
metis-archive: ${{ env.METIS_ARCHIVE }}
metis-dir: ${{ env.METIS_TOP_DIR }}
# MFEM build and test
- name: build-mfem
uses: mfem/github-actions/build-mfem@v2.0
uses: mfem/github-actions/build-mfem@master
with:
os: ${{ runner.os }}
target: optim
+20 -40
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@@ -11,56 +11,34 @@
name: repo-check
permissions:
actions: write
on:
push:
branches:
- master
- next
pull_request:
jobs:
file-headers-check:
runs-on: ubuntu-18.04
copyright-check:
runs-on: ubuntu-18.04 # needed for astyle 2.05.1
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.9.0
with:
access_token: ${{ github.token }}
- name: checkout mfem
uses: actions/checkout@v2
with:
path: mfem
- name: copyright check
id: copyright
run: |
./config/githooks/pre-push --copyright
continue-on-error: true
- name: license check
id: license
run: |
./config/githooks/pre-push --license
continue-on-error: true
- name: release check
id: release
run: |
./config/githooks/pre-push --release
continue-on-error: true
- name: wrap-up
if: steps.copyright.outcome != 'success' || steps.license.outcome != 'success' || steps.release.outcome != 'success'
run: |
if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
echo "copyright check failed, unroll log for details"
cd mfem
if git grep -l "^#.*\-2020" > matches.txt
then
echo "Please update the following files to Copyright (c) 2010-2021:"
cat matches.txt
exit 1
else
echo "No outdated copyright found."
fi
if [[ "${{ steps.license.outcome }}" != "success" ]]; then
echo "license check failed, unroll log for details"
fi
if [[ "${{ steps.release.outcome }}" != "success" ]]; then
echo "release check failed, unroll log for details"
fi
exit 1
code-style:
runs-on: ubuntu-16.04 # needed for astyle 2.05.1
@@ -75,7 +53,8 @@ jobs:
- name: style check
run: |
./config/githooks/pre-push --style
cd tests/scripts
./runtest code-style
documentation:
runs-on: ubuntu-18.04
@@ -107,4 +86,5 @@ jobs:
run: |
git fetch origin master:master
git checkout -b gh-actions-branch-history
./config/githooks/pre-push --history
cd tests/scripts
./runtest branch-history
-6
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@@ -26,7 +26,6 @@ CMakeFiles/
config/_config.hpp
config/config.mk
config/sample-runs-build.log
config/user.mk
doc/CodeDocumentation.conf
doc/CodeDocumentation.html
doc/CodeDocumentation
@@ -249,10 +248,6 @@ miniapps/performance/sol.*
miniapps/shifted/distance
miniapps/shifted/ParaViewDistance
miniapps/shifted/diffusion
miniapps/shifted/diffusion.mesh
miniapps/shifted/diffusion.gf
miniapps/shifted/ParaViewDiffusion
miniapps/tools/display-basis
miniapps/tools/load-dc
@@ -297,7 +292,6 @@ tests/unit/psedov_tests_*
tests/unit/tmop_pa_tests_*
tests/unit/ptmop_pa_tests_*
tests/unit/ceed_tests
tests/unit/debug_device_tests
# Test script output
tests/scripts/*.err
+33 -55
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@@ -40,67 +40,43 @@
# Directory used to place artifacts.
variables:
BUILD_ROOT: ${CI_BUILDS_DIR}/MFEM/${CI_PROJECT_NAME}_${CI_COMMIT_REF_SLUG}_${CI_PIPELINE_ID}
AUTOTEST_ROOT: ${CI_BUILDS_DIR}/MFEM
BUILD_ROOT: ${CI_BUILDS_DIR}/${CI_PROJECT_NAME}_${CI_COMMIT_REF_SLUG}_${CI_PIPELINE_ID}
REBASELINE: "NO"
AUTOTEST: "NO"
ALLOC_NAME: ${CI_PROJECT_NAME}_ci_${CI_PIPELINE_ID}
TPLS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tpls.git
TESTS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tests.git
AUTOTEST_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/autotest.git
MFEM_DATA_REPO: https://github.com/mfem/data.git
ARTIFACTS_DIR: artifacts
SLURM_OVERLAP: 1
# The pipeline is divided into stages. Usually, jobs in a given stage wait for
# the preceding stages to complete before to start. However, we sometimes use
# the "needs" keyword and express the DAG of jobs for more efficiency.
# - We use setup and setup_baseline phases to download content outside of mfem
# directory.
# The pipeline is divided into stages. Usually, these are also synchronization
# points, however, we use "needs" keyword to express the DAG of jobs for more
# efficiency.
# - We use setup phase to download content outside of mfem directory.
# - Allocate/Release is where quartz resources are allocated/released once for all.
# - Build and Test is where we build and MFEM for multiple toolchains.
# - Baseline_checks gathers baseline-type test suites execution
# - Baseline_publish, only available on master, allows to update baseline
# results
stages:
- setup
- q_allocate_resources
- q_build_and_test
- q_release_resources
- l_build_and_test
- c_build_and_test
- setup_baseline
- setup
- baseline_check
- baseline_to_autotest
- baseline_publish
# setup clones the mfem/data repo in ${BUILD_ROOT}. The build_and_test script
# then symlinks the repo to the parent directory of the MFEM source directory.
# Unit tests that depend on the mfem/data repo will then detect that this
# directory is present and be enabled.
# The setup job in setup stage don't rely on MFEM git repo. It prepares a
# pipeline-wide working directory downloading/updating external repos.
# TODO: updating tests and tpls is not necessary anymore since pipelines are
# now using unique directories so repo are never shared with another pipeline.
# This is not memory efficient (we keep a lot of data), hence this reminder.
# Setup
setup:
tags:
- shell
- quartz
stage: setup
variables:
GIT_STRATEGY: none
script:
- mkdir -p ${BUILD_ROOT} && cd ${BUILD_ROOT}
- if [ ! -d data ]; then git clone ${MFEM_DATA_REPO}; fi
# The setup_baseline job in setup stage_baseline doesn't rely on MFEM git repo.
# It prepares a pipeline-wide working directory downloading/updating external
# repos. TODO: updating tests and tpls is not necessary anymore since pipelines
# are now using unique directories so repo are never shared with another
# pipeline. This is not memory efficient (we keep a lot of data), hence this
# reminder.
# Note: This job can start immediately.
setup_baseline:
tags:
- shell
- quartz
stage: setup_baseline
variables:
GIT_STRATEGY: none
script:
@@ -109,9 +85,6 @@ setup_baseline:
- if [ ! -d "tests" ]; then git clone ${TESTS_REPO}; fi
- cd tpls && git pull && cd ..
- cd tests && git pull && cd ..
- cd ${AUTOTEST_ROOT}
- if [ ! -d "autotest" ]; then git clone ${AUTOTEST_REPO}; fi
- cd autotest && git pull && cd ..
needs: []
.build_toss_3_x86_64_ib_script:
@@ -126,10 +99,10 @@ setup_baseline:
script:
- srun -p mi60 -t 15 -N 1 tests/gitlab/build_and_test
# Lassen uses a different job scheduler (spectrum lsf) that does not allow
# pre-allocation the same way slurm does. We use pdebug queue on lassen to
# speed-up the allocation. However this would not be scalable to multiple
# builds.
# Lassen uses a different job scheduler (spectrum lsf) that does not
# allow pre-allocation the same way slurm does.
# We use pdebug queue on lassen to speed-up the allocation.
# However this would not be scalable to multiple builds.
.build_blueos_3_ppc64le_ib_script:
script:
- lalloc 1 -W 30 -q pdebug tests/gitlab/build_and_test
@@ -138,10 +111,16 @@ setup_baseline:
# differentiates between the two tests.
.baseline_script: &baseline_script |
# locals
_glob_out=${BASELINE_TEST}.out
_glob_err=${BASELINE_TEST}.err
_base_diff=${BASELINE_TEST}-${SYS_TYPE}.diff
_base_patch=${BASELINE_TEST}-${SYS_TYPE}.patch
_base_out=${BASELINE_TEST}-${SYS_TYPE}.out
_out=${BASELINE_TEST}-${SYS_TYPE}.out
_ref=../${BASELINE_TEST}-${SYS_TYPE}.saved
_out_txt=${BASELINE_TEST}.txt
_diff=${BASELINE_TEST}-diff.txt
# prepare
cd ${BUILD_ROOT}
ln -snf ${CI_PROJECT_DIR} mfem
@@ -156,7 +135,7 @@ setup_baseline:
echo "ERROR during ${BASELINE_TEST} execution";
echo "Here is the ${_glob_err} file content";
cat ${_glob_err}
cp ${_glob_err} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/${_glob_err}
cp ${_glob_err} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/${_glob_err}.txt
exit 1;
elif [[ ! -f ${_base_patch} && ! -f ${_base_out} ]]
then
@@ -166,20 +145,18 @@ setup_baseline:
elif [[ -f ${_base_patch} ]]
then
echo "${BASELINE_TEST}: Differences found, patch generated"
cp ${_base_patch} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/${_base_patch}
cp ${_base_patch} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/${_base_patch}.txt
elif [[ -f ${_base_out} ]]
then
echo "${BASELINE_TEST}: Differences found, replacement file generated"
cp ${_base_out} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/${_base_out}
cp ${_base_out} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/${_base_out}.txt
fi
# _base_diff won't even exist if there is no difference.
if [[ -f ${_base_diff} ]]
then
echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
cat ${_base_diff}
cp ${_base_diff} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/${_base_diff}
# We create a .err file, because that's how we signal that there was a diff.
cp ${_base_diff} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/gitlab-${BASELINE_TEST}-${SYS_TYPE}.err
cp ${_base_diff} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/${_base_diff}.txt
fi
if [[ ! -s ${_base_diff} ]]
then
@@ -218,7 +195,7 @@ setup_baseline:
- ${ARTIFACTS_DIR}
allow_failure: true
# This job can only be manually triggered on a pipeline for master branch, or if
# This job can only be manually triggers on a pipeline for master branch, or if
# the pipeline was triggered with REBASELINE="YES"
.rebaseline_mfem:
stage: baseline_publish
@@ -231,18 +208,19 @@ setup_baseline:
- export DIFF_FILE=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/baseline-${SYS_TYPE}.diff
- cd ${BUILD_ROOT}/tests
- |
if [[ ! -f "${DIFF_FILE}" ]]
if [[ ! -f "${DIFF_FILE}.txt" ]]
then
echo "Nothing to be done: no relevant change in baseline"
exit 0
elif [[ -f "${PATCH_FILE}" ]]
elif [[ -f "${PATCH_FILE}.txt" ]]
then
mv ${PATCH_FILE}.txt ${PATCH_FILE}
patch "./baseline-${SYS_TYPE}.saved" < "${PATCH_FILE}"
elif [[ -f "${FULL_FILE}t" ]]
elif [[ -f "${FULL_FILE}.txt" ]]
then
cp "${FULL_FILE}" "./baseline-${SYS_TYPE}.saved"
cp "${FULL_FILE}.txt" "./baseline-${SYS_TYPE}.saved"
else
echo "File missing: expected ${PATCH_FILE} or ${FULL_FILE}"
echo "File missing: expected ${PATCH_FILE}.txt or ${FULL_FILE}.txt"
exit 1
fi
- git add baseline-${SYS_TYPE}.saved
+2 -3
View File
@@ -22,13 +22,12 @@
# Spack helped builds
# Generic lassen build job, extending build script
# Note: Lassen jobs can start as soon as the setup job is complete.
.build_and_test_on_lassen:
extends: [.build_blueos_3_ppc64le_ib_script, .on_lassen]
stage: l_build_and_test
needs: [setup]
needs: []
opt_mpi_cuda_xl_16_1_1_8:
variables:
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70"
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=sm_70"
extends: .build_and_test_on_lassen
+3 -88
View File
@@ -16,39 +16,12 @@
- shell
- quartz
rules:
# Don't run quartz jobs if...
- if: '$CI_COMMIT_BRANCH =~ /_qnone/ || $ON_QUARTZ == "OFF"'
- if: '$CI_COMMIT_BRANCH =~ /_qnone/ || $ON_QUARTZ == "OFF"' #run except if ...
when: never
# Don't run autotest update if...
- if: '$CI_JOB_NAME =~ /update_autotest/ && $AUTOTEST != "YES"'
when: never
# Don't run autotest update if...
- if: '$CI_JOB_NAME =~ /q_report/ && $AUTOTEST != "YES"'
when: never
# Report success on success status
- if: '$CI_JOB_NAME =~ /q_report_success/ && $AUTOTEST == "YES"'
when: on_success
# Report failure on failure status
- if: '$CI_JOB_NAME =~ /q_report_failure/ && $AUTOTEST == "YES"'
when: on_failure
# Always release resources
- if: '$CI_JOB_NAME =~ /release_resources/'
when: always
# Default is to run if previous stage succeeded
- when: on_success
# This is a yaml anchor, it can be used to avoid duplication like here.
# The code below will simply be pasted wherever the anchor is placed.
.safe_create_rundir: &safe_create_rundir |
if ! mkdir ${rundir}; then
n=1
while ! mkdir ${rundir}_${n}
do
n=$((n+1))
done
rundir=${rundir}_${n}
fi
# Allocate
q_allocate_resources:
variables:
@@ -69,40 +42,6 @@ q_release_resources:
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
- ([[ -n "${JOBID}" ]] && scancel ${JOBID})
# Release
q_report_success:
variables:
GIT_STRATEGY: none
extends: .on_quartz
stage: q_release_resources
script:
- echo "Can only run if all the quartz jobs passed"
- cd ${AUTOTEST_ROOT}/autotest && git pull
- rundir="gitlab/$(date +%Y-%m-%d)-github-${CI_COMMIT_REF_SLUG}"
- *safe_create_rundir
- echo "The Quartz jobs were successful" > ${rundir}/gitlab.out
- echo "See the pipeline here -> $CI_PIPELINE_URL" >> ${rundir}/gitlab.err
- git add ${rundir}
- git commit -am "Gitlab CI log for baseline on quartz with intel ($(date +%Y-%m-%d))"
- git push origin master
q_report_failure:
variables:
GIT_STRATEGY: none
extends: .on_quartz
stage: q_release_resources
script:
- echo "Runs if there was at least one failure on quartz"
- cd ${AUTOTEST_ROOT}/autotest && git pull
- rundir="gitlab/$(date +%Y-%m-%d)-github-${CI_COMMIT_REF_SLUG}"
- *safe_create_rundir
- echo "There was an error while running CI on Quartz" > ${rundir}/gitlab.err
- echo "See the pipeline here -> $CI_PIPELINE_URL" >> ${rundir}/gitlab.err
- cp ${rundir}/gitlab.err ${rundir}/autotest-email.html
- git add ${rundir}
- git commit -am "Gitlab CI log for baseline on quartz with intel ($(date +%Y-%m-%d))"
- git push origin master
# Spack helped builds
# Generic quartz build job, extending build script
.build_and_test_on_quartz:
@@ -150,34 +89,10 @@ opt_par_gcc_6_1_0_pumi:
SPEC: "%gcc@6.1.0 +pumi"
extends: .build_and_test_on_quartz
# Baseline jobs form an independent set of jobs. We use `needs:[]` to specify
# that "setup-baseline" can start immediately. Then, we have to use needs for
# each one of the baseline jobs, otherwise they will wait for the rest of the
# pipeline.
# Baseline
baselinecheck_mfem_intel_quartz:
extends: [.baselinecheck_mfem, .on_quartz]
needs: [setup_baseline]
update_autotest:
extends: [.on_quartz]
needs: [baselinecheck_mfem_intel_quartz]
stage: baseline_to_autotest
script:
- cd ${AUTOTEST_ROOT}/autotest && git pull
- rundir="quartz/$(date +%Y-%m-%d)-github-${CI_COMMIT_REF_SLUG}"
- *safe_create_rundir
- cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
# We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
- |
if [[ -f ${rundir}/*.err ]]
then
echo "See the pipeline here -> $CI_PIPELINE_URL" >> ${rundir}/*.err
cp ${rundir}/*.err ${rundir}/autotest-email.html
fi
- git add ${rundir}
- git commit -am "Gitlab CI log for baseline on quartz with intel ($(date +%Y-%m-%d))"
- git push origin master
needs: [setup]
baselinepublish_mfem_quartz:
extends: [.on_quartz, .rebaseline_mfem]
+469
View File
@@ -0,0 +1,469 @@
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
language: cpp
os: linux
dist: bionic
stages:
- checks
- tests
- optional
env:
global:
- HYPRE_ARCHIVE=v2.19.0.tar.gz
HYPRE_URL=https://github.com/hypre-space/hypre/archive/$HYPRE_ARCHIVE
HYPRE_TOP_DIR=hypre-2.19.0
jobs:
include:
# ========================
# Checks
# ========================
# - code-style
# - documentation
# - gitignore
- stage: checks
os: linux
dist: xenial
name: "code-style"
addons:
apt:
packages:
- astyle=2.05.1-0ubuntu1
script:
- cd ${TRAVIS_BUILD_DIR}
- cd tests/scripts
- ./runtest code-style
- stage: checks
os: linux
name: "documentation"
addons:
apt:
packages:
- doxygen
- graphviz
script:
- cd ${TRAVIS_BUILD_DIR}
- cd tests/scripts
- ./runtest documentation
- stage: checks
os: linux
name: "gitignore"
addons:
apt:
packages:
- mpich
- libmpich-dev
env: MPI=YES
before_script:
- cd ${TRAVIS_BUILD_DIR}
- mpicxx -v
- make config MFEM_USE_MPI=YES MFEM_MPI_NP=2
- make all -j3
- make test-noclean
script:
- cd tests/scripts
- ./runtest gitignore
cache:
ccache: true
directories:
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
- $TRAVIS_BUILD_DIR/../metis-4.0
before_cache:
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
rm -f Lib/*.{c,o}
# ========================
# Optional Checks/Tests
# ========================
# - branch-history
- stage: optional
name: "branch-history"
if: branch != next
# need full git history for the binary/big files check
git:
depth: false
script:
- cd ${TRAVIS_BUILD_DIR}
# update master
- git fetch origin master:master
# checkout a branch (otherwise Travis works in detached head)
- git checkout -b travis_tests
- cd tests/scripts
- ./runtest branch-history
# ========================
# Linux tests
# ========================
# - serial + debug
# - serial
# - parallel + debug
# - parallel
- stage: tests
os: linux
compiler: gcc
name: "Linux: Serial + Debug"
env: DEBUG=YES
MPI=NO
CODECOV=NO
MFEM_TEST_TARGET=check
cache:
ccache: true
- os: linux
compiler: gcc
name: "Linux: Serial"
env: DEBUG=NO
MPI=NO
CODECOV=NO
MFEM_TEST_TARGET=test
cache:
ccache: true
- os: linux
compiler: gcc
name: "Linux: Parallel + Debug"
addons:
apt:
# sources:
# - ubuntu-toolchain-r-test
packages:
# GCC 4.9
# - g++-4.9
# MPICH
- mpich
- libmpich-dev
# OpenMPI
# - openmpi-bin
# - libopenmpi-dev
env: DEBUG=YES
MPI=YES
CODECOV=NO
MFEM_TEST_TARGET=check
NPROCS=2
cache:
ccache: true
directories:
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
- $TRAVIS_BUILD_DIR/../metis-4.0
before_cache:
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
rm -f Lib/*.{c,o}
- os: linux
compiler: gcc
name: "Linux: Parallel"
addons:
apt:
# sources:
# - ubuntu-toolchain-r-test
packages:
# GCC 4.9
# - g++-4.9
# MPICH
- mpich
- libmpich-dev
# OpenMPI
# - openmpi-bin
# - libopenmpi-dev
env: DEBUG=NO
MPI=YES
CODECOV=YES
MFEM_TEST_TARGET=test
NPROCS=2
cache:
ccache: true
directories:
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
- $TRAVIS_BUILD_DIR/../metis-4.0
before_cache:
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
rm -f Lib/*.{c,o}
- os: linux
compiler: gcc
name: "Linux: Parallel (cmake)"
addons:
apt:
packages:
- mpich
- libmpich-dev
env: MPI=YES
NPROCS=2
script:
- cd ${TRAVIS_BUILD_DIR}
- mkdir ${TRAVIS_BUILD_DIR}/build
- cd ${TRAVIS_BUILD_DIR}/build
- cmake ..
-DMFEM_USE_MPI=ON
-DHYPRE_DIR=${TRAVIS_BUILD_DIR}/../$HYPRE_TOP_DIR/src/hypre
-DMFEM_MPI_NP=$NPROCS
- make -j3 mfem examples
- cd ${TRAVIS_BUILD_DIR}/build/tests/unit
- make -j3
- ctest --output-on-failure
cache:
ccache: true
directories:
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
- $TRAVIS_BUILD_DIR/../metis-4.0
before_cache:
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
rm -f Lib/*.{c,o}
# ========================
# Mac OS X tests
# ========================
# - serial + debug
# - serial
# - parallel + debug
# - parallel
- os: osx
osx_image: xcode11.2
compiler: clang
name: "Mac: Serial + Debug"
addons:
homebrew:
packages:
- ccache
env: DEBUG=YES
MPI=NO
CODECOV=NO
MFEM_TEST_TARGET=check
cache:
ccache: true
- os: osx
osx_image: xcode11.2
compiler: clang
name: "Mac: Serial"
addons:
homebrew:
packages:
- ccache
env: DEBUG=NO
MPI=NO
CODECOV=NO
MFEM_TEST_TARGET=test
cache:
ccache: true
- os: osx
osx_image: xcode11.2
compiler: clang
name: "Mac: Parallel + Debug"
addons:
homebrew:
packages:
- ccache
env: DEBUG=YES
MPI=YES
CODECOV=NO
MFEM_TEST_TARGET=check
NPROCS=4
TMPDIR=/tmp
cache:
ccache: true
directories:
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
- $TRAVIS_BUILD_DIR/../metis-4.0
- $HOME/local-cached
before_cache:
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
rm -f Lib/*.{c,o}
- os: osx
osx_image: xcode11.2
compiler: clang
name: "Mac: Parallel"
addons:
homebrew:
packages:
- ccache
env: DEBUG=NO
MPI=YES
CODECOV=YES
MFEM_TEST_TARGET=test
NPROCS=4
TMPDIR=/tmp
cache:
ccache: true
directories:
- $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
- $TRAVIS_BUILD_DIR/../metis-4.0
- $HOME/local-cached
before_cache:
- cd $TRAVIS_BUILD_DIR/../metis-4.0;
mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
rm -f Lib/*.{c,o}
before_install:
# No addon for brew yet, have to install OSX packages this way.
# - if [ $TRAVIS_OS_NAME == "osx" ] && [ $MPI == "YES" ]; then
# brew install open-mpi;
# fi
# Disable ccache while building dependencies that are cached:
- echo "before \$PATH = $PATH";
export PATH=${PATH//\/usr\/lib\/ccache:/};
echo "after \$PATH = $PATH"
# On Mac OS X, build and cache OpenMPI 2.1.6:
- if [ $TRAVIS_OS_NAME == "osx" ] && [ $MPI == "YES" ]; then
if [ ! -e $HOME/local-cached/bin/mpicc ]; then
mkdir -p $HOME/builds && cd $HOME/builds &&
wget https://download.open-mpi.org/release/open-mpi/v2.1/openmpi-2.1.6.tar.bz2 &&
tar jxf openmpi-2.1.6.tar.bz2 &&
mkdir openmpi-build && cd openmpi-build &&
../openmpi-2.1.6/configure --prefix=$HOME/local-cached &&
make -j3 all && make install;
fi;
PATH=$HOME/local-cached/bin:$PATH;
cd $TRAVIS_BUILD_DIR;
fi
# Update environment to find g++ 4.9 installation first.
# - if [ $TRAVIS_OS_NAME == "linux" ]; then
# mkdir -p latest-gcc-symlinks;
# ln -s /usr/bin/g++-4.9 latest-gcc-symlinks/g++;
# ln -s /usr/bin/gcc-4.9 latest-gcc-symlinks/gcc;
# ln -s /usr/bin/gcov-4.9 latest-gcc-symlinks/gcov;
# export PATH=$PWD/latest-gcc-symlinks:$PATH;
# fi
# Install tool to upload code coverage reports to coveralls.io
- if [ "$CODECOV" == "YES" ]; then
export PYTHONUSERBASE=$HOME/local;
pip install --user cpp-coveralls;
pip install --user pyyaml;
PATH=$HOME/local/bin:$PATH;
fi
install:
# Set MPI compilers, print compiler version
- if [ $MPI == "YES" ]; then
if [ "$TRAVIS_OS_NAME" == "linux" ]; then
export MPICH_CC="$CC";
export MPICH_CXX="$CXX";
else
export OMPI_CC="$CC";
export OMPI_CXX="$CXX";
mpic++ --showme:version;
fi;
mpic++ -v;
else
$CXX -v;
fi
# Back out of the mfem directory to install the libraries
- cd ..
# hypre
- if [ $MPI == "YES" ]; then
if [ ! -e $HYPRE_TOP_DIR/src/hypre/lib/libHYPRE.a ]; then
wget $HYPRE_URL;
rm -rf $HYPRE_TOP_DIR;
tar xvzf $HYPRE_ARCHIVE;
cd $HYPRE_TOP_DIR/src;
./configure --disable-fortran CC=mpicc CXX=mpic++;
make -j3;
cd ../..;
else
echo "Reusing cached $HYPRE_TOP_DIR/";
fi;
ln -s $HYPRE_TOP_DIR hypre;
else
echo "Serial build, not using hypre";
fi
# METIS, use a mirror because the original source server is not always up.
# Original url:
# http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/metis-4.0.3.tar.gz
- if [ $MPI == "YES" ]; then
if [ ! -e metis-4.0/libmetis.a ]; then
wget https://mfem.github.io/tpls/metis-4.0.3.tar.gz;
tar xvzf metis-4.0.3.tar.gz;
make -j3 -C metis-4.0.3/Lib CC="$CC" OPTFLAGS="-O2";
rm -rf metis-4.0;
mv metis-4.0.3 metis-4.0;
else
echo "Reusing cached metis-4.0/";
fi;
fi
# Re-enable ccache on linux; enable ccache on mac os:
- if [ $TRAVIS_OS_NAME == "linux" ]; then
export PATH="/usr/lib/ccache:$PATH";
else
if [ $TRAVIS_OS_NAME == "osx" ]; then
export PATH="/usr/local/opt/ccache/libexec:$PATH";
fi;
fi
- printf "which \$CC = "; which $CC;
printf "which \$CXX = "; which $CXX
script:
# Compiler
- if [ $MPI == "YES" ]; then
export MYCXX=mpic++;
export MAKE_CXX_FLAG=MPICXX=$MYCXX;
else
export MYCXX="$CXX";
export MAKE_CXX_FLAG=CXX=$MYCXX;
fi
# Print the compiler version
- $MYCXX -v
# Set some variables
- cd $TRAVIS_BUILD_DIR;
CPPFLAGS="";
SKIP_TEST_DIRS="";
if [ "$CODECOV" == "YES" ]; then
CPPFLAGS="--coverage -g";
fi;
if [ "$TRAVIS_OS_NAME" != "linux" ] || [ "$DEBUG" == "YES" ]; then
CPPFLAGS+=" -pedantic -Wall -Werror";
fi
# Configure the library
- make config MFEM_USE_MPI=$MPI MFEM_DEBUG=$DEBUG $MAKE_CXX_FLAG
MFEM_MPI_NP=$NPROCS CPPFLAGS="$CPPFLAGS"
# Show the configuration
- make info
# Build the library
- make -j3
# Build the examples and the miniapps
- make -j3 all
# Run tests
- make $MFEM_TEST_TARGET SKIP_TEST_DIRS="$SKIP_TEST_DIRS"
after_success:
- if [ "$CODECOV" == "YES" ]; then
coveralls --include fem --include general --include linalg --include
mesh --exclude /usr --gcov-options '\-lp' --root $TRAVIS_BUILD_DIR;
fi
+155 -238
View File
@@ -8,87 +8,40 @@
https://mfem.org
Version 4.3.1 (development)
Version 4.2.1 (development)
===========================
- Added support for hr-adaptivity using TMOP-based error estimator.
- Added initial support for GPU-accelerated versions of PETSc that works with
MFEM_USE_CUDA if PETSc has been configured with CUDA support. Examples 1 and 9
in the examples/petsc directory have been modified to work with --device cuda.
Examples with GAMG (ex1p) and SLEPc (ex11p) are also provided.
- Adding lowest order Nedelec and Raviart-Thomas basis functions on wedge
shaped elements.
- Memory management:
* Added method Device::SetMemoryTypes that can be used to change the default
host and device MemoryTypes before Device setup.
* In class MemoryManager, added methods GetDualMemoryType and
SetDualMemoryType; dual MemoryTypes are used to determine the second
MemoryType (host or device) when only one MemoryType is specified in methods
of class Memory.
* Added Memory constructor for setting both the host and device MemoryTypes.
* Switched the default behavior of device memory allocations so that they
are deferred until the device pointer is needed.
* Added a second Umpire device MemoryType, DEVICE_UMPIRE_2, with
corresponding allocator that can be set with the method
MemoryManager::SetUmpireDevice2AllocatorName.
* Added HOST_PINNED MemoryType and a pinned host allocator for CUDA and HIP.
- Added initial support for meshes with pyramidal elements, including several
pyramidal meshes in the data/ directory and support for the lowest order H1,
Nedelec, Raviart-Thomas, and L2 basis functions on pyramids.
- Added support for Caliper: a library to integrate performance profiling
capabilities into applications. See examples/caliper for more details.
- Updated the hypre interface according to changes in hypre-2.22.1. The ADS
solver is now fully working on GPUs.
- Added support for explicit vectorization in the high-performance templated
code for Fujitsu's A64FX ARM microprocessor architecture.
- Tetrahedral meshes no longer need to be reordered to support high order
Nedelec basis functions. This will allow future support for Nedelec basis
functions on wedges and pyramids which are not amenable to reordering. The
ReorientTetMesh method of the Mesh and ParMesh classes has been deprecated.
- Added AlgebraicCeedSolver that does matrix-free algebraic p-multigrid for
diffusion problems with the Ceed backend.
Version 4.3, released on July 29, 2021
======================================
Discretization improvements
---------------------------
- Variable order spaces, p- and hp-refinement. This is the initial (serial)
support for variable-order FiniteElementCollection and FiniteElementSpace.
The new method FiniteElementSpace::SetElementOrder can be called to set an
arbitrary order for each mesh element. The conforming interpolation matrix
will now automatically constrain p- and hp- interfaces, enabling general
hp-refinement in both 2D and 3D, on uniform or mixed NC meshes. Support for
parallel variable-order spaces will follow shortly.
- Extended the support for field transfer between high-order and low-order
refined finite element spaces to include: dual fields and H1 fields (both
primary and dual). These are illustrated in the lor-transfer miniapp.
- Improved libCEED integration, including support for VectorCoefficient,
ConvectionIntegrator, and VectorConvectionNLFIntegrator with libCEED backends.
- Extending support for L2 basis functions using MapTypes VALUE and INTEGRAL in
linear interpolators and GridFunction "GetValue" methods.
- Changed the interface for the error estimator and implemented the Kelly error
indicator for scalar-valued problems, supported in serial and parallel builds.
- Added support for the "BR2" discontinuous Galerkin discretization for
diffusion via DGDiffusionBR2Integrator (see Example 14/14p).
- Added convective and skew-symmetric integrators for the nonlinear term in the
Navier-Stokes equations.
- Added new classes DenseSymmetricMatrix and SymmetricMatrixCoefficient for
efficient evaluation of symmetric matrix coefficients. This replaces the now
deprecated EvalSymmetric in MatrixCoefficient. Added DiagonalMatrixCoefficient
for clarity, which is a typedef of VectorCoefficient.
- Added support for nonscalar coefficient with VectorDiffusionIntegrator.
Linear and nonlinear solvers
----------------------------
- Added support for AMG preconditioners on GPUs based on the hypre library
(version 2.22.0 or later). These include BoomerAMG, AMS and ADS and most
MFEM examples that use hypre have been ported to support this functionality.
The GPU preconditioners require that both hypre and MFEM are built with CUDA
support. Hypre builds with CUDA and unified memory are also supported and
can be used with `-d cuda:uvm` as a command-line option.
- Added support for AMG preconditioners for non-symmetric systems (e.g.
advection-dominated problems) using hypre's approximate ideal restriction
(AIR) AMG. Requires hypre version 2.14.0 or newer. Usage is illustrated in
example 9/9p.
- Added new functionality for constructing low-order refined discretizations and
solvers, see the LORDiscretization and LORSolver classes. A new basis type for
H(curl) and H(div) spaces is introduced to give spectral equivalence. This
functionality is illustrated in the LOR solvers miniapp in miniapps/solvers.
- Generalized the Multigrid class to support non-geometric multigrid. Previous
functionality, based on FiniteElementSpaceHierarchy, is now available in the
derived class GeometricMultigrid.
- Introduced new options for the mesh-explorer miniapp to visualize the actual
element attributes in parallel meshes while retaining the visualization of
the domain decomposition.
- Introduced solver interface for linear problems with constraints, a few
concrete solvers that implement the interface, and a demonstration of their
@@ -99,18 +52,19 @@ Linear and nonlinear solvers
as described in Barker and Kolev 2020 (https://doi.org/10.1002/nla.2348). See
Example 3p and linalg/auxiliary.?pp.
- Improved interface for using the Ginkgo library, including: support for matrix-
free operators in Ginkgo solvers, new wrappers for Ginkgo preconditioners, HIP
support, and reduction of unnecessary data copies.
- Added a new miniapp block-solvers that compares the performance of various
solvers for mixed finite element discretization of the second order scalar
elliptic equations. Currently available solvers in the miniapp include a
block-diagonal preconditioner that is based on approximate Schur complement
(implemented in ex5p), and a newly implemented solver DivFreeSolver, which
exploits a multilevel decomposition of the Raviart-Thomas space and its
divergence-free subspace. See the miniapps/solvers directory for more details.
- Added initial support for hypre's mixed integer (mixedint) capability, which
uses different data types for local and global indices in order to save memory
in large problems. This capability requires that hypre was configured with the
--enable-mixedint option. Note that this option is currently tested only in
ex1p, ex3p, and ex4p, and may not work in more general settings.
- Added a new miniapp for computing (signed) distance functions to a point
source or zero level set. See miniapps/shifted/distance.cpp.
- Added AlgebraicCeedSolver that does matrix-free algebraic p-multigrid for
diffusion problems with the Ceed backend.
- Added matrix-free GPU-enabled implementations of GradientInterpolator and
IdentityInterpolator.
- Added interface to MUMPS direct solver. Its usage is demonstrated in ex25p.
See http://mumps.enseeiht.fr/ for more details. Supported versions >= 5.1.1.
@@ -118,17 +72,6 @@ Linear and nonlinear solvers
- Added three ESDIRK time integrators: implicit trapezoid rule, L-stable
ESDIRK-32, and A-stable ESDIRK-33.
- Implemented a variable step-size IMEX (VSSIMEX) method for the Navier miniapp.
- Implemented an adaptive linear solver tolerance option for NewtonSolver based
on the algorithm of Eisenstat and Walker.
Meshing improvements
--------------------
- Added support for reading high-order Lagrange meshes in VTK format. Arbitrary-
orders and all element types are supported. See the VTK blog for more info:
https://blog.kitware.com/wp-content/uploads/2018/09/Source_Issue_43.pdf.
- Introduced a new non-conforming mesh format that fixes known inconsistencies
of legacy "MFEM mesh v1.1" NC format and works consistently in both serial and
parallel. ParMesh::ParPrint can now print non-conforming AMR meshes that can
@@ -137,26 +80,108 @@ Meshing improvements
NC data files are compatible with serial code, e.g., can be viewed with serial
GLVis. Loading of legacy NC mesh files is still supported.
- Added FMS support (https://github.com/CEED/FMS) to mfem. FMS can represent
unstructured high-order meshes with general high-order finite element fields
on them. When enabled, mfem can convert data collections to/from FMS data
collections in memory. In addition, an FMS data collection class was added so
the convert-dc miniapp can read and generate data files in FMS format.
- Added support for 1D non-conforming meshes (which can be useful for parallel
load balancing and derefinement).
- Added a "scaled Jacobian" visualization option in the Mesh Explorer miniapp to
help identify elements with poor mesh quality.
- Added support for the "BR2" discontinuous Galerkin discretization for
diffusion via DGDiffusionBR2Integrator (see Example 14/14p).
- Generalized the Multigrid class to support non-geometric multigrid. The
previous functionality, based on FiniteElementSpaceHierarchy, is now available
in the derived class GeometricMultigrid.
- Upgraded the Catch unit test framework from version 2.13.0 to version 2.13.2.
- The TMOP mesh optimization algorithms were extended to GPU:
- QualityMetric #1, #2, #7 and #77 are available in 2D, #302, #303, #315
and #321 in 3D
- Both AnalyticAdaptTC and DiscreteAdaptTC TargetConstructor are available
- Kernels for normalization and limiting have been added
- The AdvectorCG now also supports AssemblyLevel::PARTIAL
- Added a new command line boolean option (`--all`) to the unit tests to launch
*all* non-regression tests.
- Added support for different modes of QuadratureInterpolator on GPU.
The layout (QVectorLayout::byNODES|byVDIM) and the tensor products modes can
be enabled before calling the Mult, Values, Derivatives, PhysDerivatives and
Determinants methods.
- Implemented a filter method for the Navier miniapp to stabilize highly
turbulent flows in direct numerical simulation.
- Added HIP support to the CMake build system.
- Added support for reading high-order Lagrange meshes in VTK format. Arbitrary-
orders and all element types are supported. See the VTK blog for more info:
https://blog.kitware.com/wp-content/uploads/2018/09/Source_Issue_43.pdf.
- Added support for reading VTK meshes in XML format.
- Added partial assembly and device support to Example 25/25p, with diagonal
preconditioning.
- Implemented a variable step-size IMEX (VSSIMEX) method for the Navier miniapp.
- Added new mesh quality metrics and improved the untangling capabilities of the
TMOP-based mesh optimization algorithms.
- The TMOP mesh optimization algorithms were extended to GPU:
* QualityMetric 1, 2, 7, 77 are available in 2D, 302, 303, 315, 321 in 3D
* Both AnalyticAdaptTC and DiscreteAdaptTC TargetConstructor are available
* Kernels for normalization and limiting have been added
* The AdvectorCG now also supports AssemblyLevel::PARTIAL
- Added convective and skew-symmetric integrators for the nonlinear term in the
Navier-Stokes equations.
- Added new miniapp directory mtop/ with optimization-oriented block parametric
non-linear form and abstract integrators. Two new miniapps, ParHeat and
SeqHeat, demonstrate parallel and sequential implementation of gradients
evaluation for linear diffusion with discrete density.
- Changed the interface for the error estimator.
- Implemented the parallel Kelly error indicator for scalar-valued problems.
- Added new classes DenseSymmetricMatrix and SymmetricMatrixCoefficient for
efficient evaluation of symmetric matrix coefficients. This replaces the now
deprecated EvalSymmetric in MatrixCoefficient. Added DiagonalMatrixCoefficient
for clarity, which is a typedef of VectorCoefficient.
- Added support for AMG preconditioners for non-symmetric systems (e.g.
advection-dominated problems) using hypre's approximate ideal restriction
(AIR) AMG. Requires hypre version 2.14.0 or newer. Usage is illustrated in
example 9/9p.
- Implemented an adaptive linear solver tolerance option for NewtonSolver based
on the algorithm of Eisenstat and Walker.
- Added support for nonscalar coefficient with VectorDiffusionIntegrator.
- Extending support for L2 basis functions using MapTypes VALUE and INTEGRAL in
linear interpolators and GridFunction "GetValue" methods.
- Variable order spaces, p- and hp-refinement. This is the initial (serial)
support for variable-order FiniteElementCollection and FiniteElementSpace.
The new method FiniteElementSpace::SetElementOrder can be called to set an
arbitrary order for each mesh element. The conforming interpolation matrix
will now automatically constrain p- and hp- interfaces, enabling general
hp-refinement in both 2D and 3D, on uniform or mixed NC meshes. Support for
parallel variable-order spaces will follow shortly.
- Added support for creating refined meshes for all element types (e.g. by
splitting high-order elements into low-order refined elements), including
mixed meshes. The LOR Transfer miniapp (miniapps/tools/lor-transfer.cpp) now
supports meshes with any element geometry.
- Gitlab CI: use Spack (and Uberenv) to automate the build of TPLs.
- Added new miniapps demonstrating: 1) the use of GSLIB for overlapping grids,
see gslib/schwarz_ex1, and 2) coupling different physics in different domains,
see navier/cht. Note that gslib v1.0.7 is require (see INSTALL for details).
- Added a new, very simple example (ex0 and parallel version ex0p). This
example solves a simple Poisson problem using H1 elements (the same problem as
ex1), but is intended to be extremely simple and approachable for new users.
- Meshes consisting of any type of elements (including mixed meshes) can be
converted to all-simplex meshes using Mesh::MakeSimplicial.
@@ -169,147 +194,36 @@ Meshing improvements
requisite periodic vertex mappings can be created with
Mesh::CreatePeriodicVertexMapping.
- Added support for 1D non-conforming meshes (which can be useful for parallel
load balancing and derefinement).
- Added support for transferring dual fields between high-order and low-order
refined finite element spaces using the transposed versions of the
L2ProjectionGridTransfer operators. This functionality is illustrated in the
lor-transfer miniapp.
- Added sample meshes in the `data` subdirectory showing the reference elements
of the six currently supported element types; ref-segment.mesh,
ref-triangle.mesh, ref-square.mesh, ref-tetrahedron.mesh, ref-cube.mesh, and
ref-prism.mesh.
- Added initial support for hypre's mixed integer (mixedint) capability, which
uses different data types for local and global indices in order to save memory
in large problems. This capability requires that hypre was configured with the
--enable-mixedint option. Note that this option is currently tested only in
ex1p and may not work in more general settings.
High-performance computing
--------------------------
- Added initial support for GPU-accelerated versions of PETSc that works with
MFEM_USE_CUDA if PETSc has been configured with CUDA support. Examples 1 and 9
in the examples/petsc directory have been modified to work with --device cuda.
Examples with GAMG (ex1p) and SLEPc (ex11p) are also provided.
- Added new functionality for constructing low-order refined discretizations and
solvers, see the LORDiscretization and LORSolver classes. A new basis type for
H(curl) and H(div) spaces is introduced to give spectral equivalence. This
functionality is illustrated in the LOR solvers miniapp in miniapps/solvers.
- Added support for explicit vectorization in the high-performance templated
code for Fujitsu's A64FX ARM microprocessor architecture.
libCEED integration improvements
--------------------------------
- Refactor the libCEED integration
- Added support for different modes of QuadratureInterpolator on GPU.
The layout (QVectorLayout::byNODES|byVDIM) and the tensor products modes can
be enabled before calling the Mult, Values, Derivatives, PhysDerivatives and
Determinants methods.
- Add support for VectorCoefficient with libCEED backends.
- Added method Device::SetMemoryTypes that can be used to change the default
host and device MemoryTypes before Device setup.
- In class MemoryManager, added methods GetDualMemoryType and SetDualMemoryType;
dual MemoryTypes are used to determine the second MemoryType (host or device)
when only one MemoryType is specified in methods of class Memory.
- Added Memory constructor for setting both the host and device MemoryTypes.
- Switched the default behavior of device memory allocations so that they are
deferred until the device pointer is needed.
- Added a second Umpire device MemoryType, DEVICE_UMPIRE_2, with corresponding
allocator that can be set with the method SetUmpireDevice2AllocatorName.
- Added HOST_PINNED MemoryType and a pinned host allocator for CUDA and HIP.
- Added matrix-free GPU-enabled implementations of GradientInterpolator and
IdentityInterpolator.
New and updated examples and miniapps
-------------------------------------
- Added a new, very simple example (ex0 and parallel version ex0p). This example
solves a simple Poisson problem using H1 elements (the same problem as ex1),
but is intended to be extremely simple and approachable for new users.
- Added new miniapps demonstrating: 1) the use of GSLIB for overlapping grids,
see gslib/schwarz_ex1, and 2) coupling different physics in different domains,
see navier/cht. Note that gslib v1.0.7 is require (see INSTALL for details).
- Added a new miniapp for computing (signed) distance functions to a point
source or zero level set. See miniapps/shifted/distance.cpp.
- Added a high-order extension of the shifted boundary method to solve PDEs on
non body-fitted meshes. This is illustrated in the new Shifted Diffusion
miniapp, see miniapps/shifted/diffusion.cpp.
- Added new miniapp directory mtop/ with optimization-oriented block parametric
non-linear form and abstract integrators. Two new miniapps, ParHeat and
SeqHeat, demonstrate parallel and sequential implementation of gradients
evaluation for linear diffusion with discrete density.
- Added a new miniapp block-solvers that compares the performance of various
solvers for mixed finite element discretization of the second order scalar
elliptic equations. Currently available solvers in the miniapp include a
block-diagonal preconditioner that is based on approximate Schur complement
(implemented in ex5p), and a newly implemented solver DivFreeSolver, which
exploits a multilevel decomposition of the Raviart-Thomas space and its
divergence-free subspace. See the miniapps/solvers directory for more details.
- Introduced new options for the mesh-explorer miniapp to visualize the actual
element attributes in parallel meshes while retaining the visualization of the
domain decomposition.
- Added partial assembly and device support to Example 25/25p, with diagonal
preconditioning.
- Implemented a filter method for the Navier miniapp to stabilize highly
turbulent flows in direct numerical simulation.
Improved testing
----------------
- Transitioned from Travis to GitHub Action for testing/CI on GitHub.
- Use Spack (and Uberenv) to automate TPL building in LLNL GitLab tests.
- Extended `make test` to include GPU tests when MFEM is built with CUDA or HIP
support.
- Added a set of suggested git hooks for developers in config/githooks.
- Added support for Caliper: a library to integrate performance profiling
capabilities into applications. See examples/caliper for more details.
- Added a new command line boolean option (`--all`) to the unit tests to launch
*all* non-regression tests.
- Upgraded the Catch unit test framework from version 2.13.0 to version 2.13.2.
Miscellaneous
-------------
- The following integrations have updated minimum version requirements:
* CUDA >= 10.1.168
* Ginkgo >= 1.4.0
* GSLIB >= 1.0.7
* HIOP >= 0.4
* HYPRE >= 2.20.0 for mixedint support
* HYPRE >= 2.22.0 for CUDA support
* libCEED >= 0.8
* PETSc >= 3.15.0 for CUDA support
* RAJA >= 0.13.0
see INSTALL for more details.
- Added a "scaled Jacobian" visualization option in the Mesh Explorer miniapp to
help identify elements with poor mesh quality.
- Added support for reading VTK meshes in XML format.
- Added makefile rule to generate TAGS table for vi or Emacs users.
- Added HIP support to the CMake build system.
- Various other simplifications, extensions, and bugfixes in the code.
API changes
-----------
- Added an abstract interface `mfem::FaceRestriction` for `H1FaceRestriction`
and `L2FaceRestriction`.
In order to conform with the semantic of `MultTranspose` in `mfem::Operator`,
`mfem::FaceRestriction::MultTranspose` now sets instead of adding values, and
`mfem::FaceRestriction::AddMultTranspose` should replace previous calls to
`mfem::FaceRestriction::MultTranspose`.
- Add support for ConvectionIntegrator, and VectorConvectionNLFIntegrator with
libCEED backends.
Version 4.2, released on October 30, 2020
=========================================
High-performance computing
High-Performance Computing
--------------------------
- Added support for explicit vectorization in the high-performance templated
code, which can now take advantage of specific classes on the following
@@ -391,6 +305,9 @@ Linear and nonlinear solvers
matrix with the function HypreParMatrixFromBlocks. This could be useful for
solving block systems with parallel direct solvers such as STRUMPACK.
- Added CUDA support for SUNDIALS ODE integrators. See the updated SUNDIALS
modification of Example 9/9p.
- Added wrappers for hypre's flexible GMRES solver and the new parallel ILU
preconditioner. The latter requires hypre version 2.19.0 or later.
@@ -501,7 +418,7 @@ New and updated examples and miniapps
L2, with partial assembly support in Example 24/24p.
* Weak Dirichlet boundary conditions (Nitsche) to the NURBS miniapp.
Data management and visualization
Data management and Visualization
---------------------------------
- Added support for ADIOS2 for parallel I/O with ParaView visualization. See
Examples 5, 9, 12, 16. The classes adios2stream and ADIOS2DataCollection
-66
View File
@@ -1,66 +0,0 @@
cff-version: 1.2.0
message: "If you use MFEM, please cite it as follows."
authors:
- family-names: "MFEM Team"
title: "MFEM: Modular Finite Element Methods [Software]"
doi: 10.11578/dc.20171025.1248
url: "https://mfem.org"
preferred-citation:
type: article
authors:
- family-names: "Anderson"
given-names: "Robert"
orcid: "https://orcid.org/0000-0002-3508-9944"
- family-names: "Andrej"
given-names: "Julian"
orcid: "https://orcid.org/0000-0001-7661-4840"
- family-names: "Barker"
given-names: "Andrew"
orcid: "https://orcid.org/0000-0003-3572-911X"
- family-names: "Bramwell"
given-names: "Jamie"
- family-names: "Camier"
given-names: "Jean-Sylvain"
orcid: "https://orcid.org/0000-0003-2421-1999"
- family-names: "Cerveny"
given-names: "Jakub"
orcid: "https://orcid.org/0000-0003-4231-2531"
- family-names: "Dobrev"
given-names: "Veselin"
orcid: "https://orcid.org/0000-0003-1793-5622"
- family-names: "Dudouit"
given-names: "Yohann"
orcid: "https://orcid.org/0000-0001-5831-561X"
- family-names: "Fisher"
given-names: "Aaron"
- family-names: "Kolev"
given-names: "Tzanio"
orcid: "https://orcid.org/0000-0002-2810-3090"
- family-names: "Pazner"
given-names: "Will"
orcid: "https://orcid.org/0000-0003-4885-2934"
- family-names: "Stowell"
given-names: "Mark"
orcid: "https://orcid.org/0000-0002-5389-7435"
- family-names: "Tomov"
given-names: "Vladimir"
orcid: "https://orcid.org/0000-0002-1846-6816"
- family-names: "Akkerman"
given-names: "Ido"
orcid: "https://orcid.org/0000-0002-5937-0300"
- family-names: "Dahm"
given-names: "Johann"
orcid: "https://orcid.org/0000-0001-9657-3564"
- family-names: "Medina"
given-names: "David"
- family-names: "Zampini"
given-names: "Stefano"
orcid: "https://orcid.org/0000-0002-0435-0433"
doi: "10.1016/j.camwa.2020.06.009"
journal: "Computers \\& Mathematics with Applications"
month: 1
start: 42 # First page number
end: 74 # Last page number
title: "MFEM: A Modular Finite Element Methods Library"
volume: 81
year: 2021
+27 -25
View File
@@ -16,9 +16,6 @@ set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
# Require C++11 and disable compiler-specific extensions
set(CMAKE_CXX_STANDARD 11)
if (MFEM_USE_GINKGO)
set(CMAKE_CXX_STANDARD 14)
endif()
set(CMAKE_CXX_STANDARD_REQUIRED ON)
set(CMAKE_CXX_EXTENSIONS OFF)
@@ -54,7 +51,7 @@ project(mfem NONE)
# Current version of MFEM, see also `makefile`.
# mfem_VERSION = (string)
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
set(${PROJECT_NAME}_VERSION 4.3.1)
set(${PROJECT_NAME}_VERSION 4.2.1)
# Prohibit in-source build
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
@@ -102,9 +99,6 @@ if (MFEM_USE_CUDA)
endif()
enable_language(CUDA)
set(CMAKE_CUDA_STANDARD 11)
if (MFEM_USE_GINKGO)
set(CMAKE_CUDA_STANDARD 14)
endif()
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
set(CMAKE_CUDA_EXTENSIONS OFF)
set(CUDA_FLAGS "--expt-extended-lambda")
@@ -175,10 +169,6 @@ else()
set(MFEM_DEBUG OFF)
endif()
if (WIN32)
add_definitions(-D_USE_MATH_DEFINES)
endif()
# MPI -> hypre; PETSc (optional)
if (MFEM_USE_MPI)
find_package(MPI REQUIRED)
@@ -250,7 +240,6 @@ if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
message(FATAL_ERROR " *** MFEM_USE_LEGACY_OPENMP requires MFEM_THREAD_SAFE=ON.")
endif()
find_package(OpenMP REQUIRED)
set(OPENMP_LIBRARIES ${OpenMP_CXX_LIBRARIES})
endif()
# SuiteSparse (before SUNDIALS which may depend on KLU)
@@ -335,10 +324,6 @@ if (MFEM_USE_CONDUIT)
find_package(Conduit REQUIRED conduit relay blueprint )
endif()
if (MFEM_USE_FMS)
find_package(FMS REQUIRED fms )
endif()
# Axom/Sidre
if (MFEM_USE_SIDRE)
find_package(Axom REQUIRED Axom)
@@ -366,6 +351,30 @@ if (MFEM_USE_HIOP)
# find_package updates HIOP_FOUND, HIOP_INCLUDE_DIRS, HIOP_LIBRARIES
endif()
# ADEPT package
if (MFEM_USE_ADEPT)
find_package(ADEPT REQUIRED)
# find_package updates ADEPT_FOUND, ADEPT_INCLUDE_DIRS, ADEPT_LIBRARIES
endif()
# FADBAD++ package
if (MFEM_USE_FADBADPP)
find_package(FADBADPP REQUIRED)
# find_package updates FADBADPP_FOUND, FADBADPP_INCLUDE_DIRS, FADBADPP_LIBRARIES
endif()
# CoDiPack package
if (MFEM_USE_CODIPACK)
find_package(CODIPACK REQUIRED)
# find_package updates CODIPACK_FOUND, CODIPACK_INCLUDE_DIRS, CODIPACK_LIBRARIES
endif()
# Eigen package
if (MFEM_USE_EIGEN)
find_package(EIGEN REQUIRED)
# find_package updates EIGEN_FOUND, EIGEN_INCLUDE_DIRS, EIGEN_LIBRARIES
endif()
# OCCA
if (MFEM_USE_OCCA)
find_package(OCCA REQUIRED)
@@ -392,9 +401,6 @@ if (MFEM_USE_HIP)
if (HIP_ARCH)
message(STATUS "Using HIP architecture: ${HIP_ARCH}")
list(APPEND HIP_HIPCC_FLAGS "--amdgpu-target=${HIP_ARCH}")
if (MFEM_USE_GINKGO)
list(APPEND HIP_HIPCC_FLAGS "-std=c++14")
endif()
endif()
endif()
@@ -433,10 +439,9 @@ endif()
# integers, the METIS header (with 32-bit indices, as used by mfem) needs to
# be before SuiteSparse.
set(MFEM_TPLS MPI_CXX OPENMP HYPRE BLAS LAPACK SuperLUDist METIS SuiteSparse SUNDIALS PETSC
SLEPC MESQUITE MUMPS STRUMPACK AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB NETCDF
SLEPC MESQUITE MUMPS STRUMPACK AXOM CONDUIT Ginkgo GNUTLS GSLIB NETCDF
MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE ADIOS2
CUSPARSE MKL_CPARDISO AMGX CALIPER)
CUSPARSE MKL_CPARDISO AMGX CALIPER FADBADPP ADEPT CODIPACK EIGEN)
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
set(TPL_LIBRARIES "")
set(TPL_INCLUDE_DIRS "")
@@ -455,9 +460,6 @@ include_directories(${TPL_INCLUDE_DIRS})
if (OPENMP_FOUND)
message(STATUS "MFEM: using package OpenMP")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
if (MFEM_USE_CUDA)
set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcompiler=${OpenMP_CXX_FLAGS}")
endif()
endif()
message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
+17 -33
View File
@@ -4,9 +4,7 @@
<p align="center">
<a href="https://github.com/mfem/mfem/blob/master/LICENSE"><img alt="License" src="https://img.shields.io/badge/License-BSD-brightgreen.svg"></a>
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Arepo-check+branch%3Amaster"><img alt="Repo check" src="https://github.com/mfem/mfem/actions/workflows/repo-check.yml/badge.svg?branch=master"></a>
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuild-analysis+branch%3Amaster"><img alt="Build Analysis" src="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml/badge.svg?branch=master"></a>
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuilds-and-tests+branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
<a href="https://travis-ci.org/mfem/mfem"><img alt="Build Status" src="https://travis-ci.org/mfem/mfem.svg?branch=master"></a>
<a href="https://ci.appveyor.com/project/mfem/mfem"><img alt="Build Status" src="https://ci.appveyor.com/api/projects/status/19non9sqm6msi2wy?svg=true"></a>
<a href="https://mfem.github.io/doxygen/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
</p>
@@ -65,8 +63,6 @@ Origin](#developers-certificate-of-origin-11) at the end of this file.*
development branches off `mfem:master`.
- Please follow the [developer guidelines](#developer-guidelines), in particular
with regards to documentation and code styling.
- Please do not commit large/binary files to the central repository (use a fork
instead).
- Pull requests should be issued toward `mfem:master`. Make sure
to check the items off the [Pull Request Checklist](#pull-request-checklist).
- When your contribution is fully working and ready to be reviewed, add
@@ -75,7 +71,6 @@ Origin](#developers-certificate-of-origin-11) at the end of this file.*
reviewers to evaluate the changes.
- The reviewers have 3 weeks to evaluate the PR and work with the author to
fix issues and implement improvements.
- During review there should be no force pushes/rewriting history in the branch.
- After approval, MFEM developers merge the PR manually in the [mfem:next branch](#masternext-workflow).
- After a week of testing in `mfem:next`, the original PR is merged in `mfem:master`.
- We use [milestones](https://github.com/mfem/mfem/milestones) to coordinate the
@@ -96,8 +91,8 @@ The MFEM source code has the following structure:
```
.
├── config
── cmake
└── githooks
── cmake
└── ...
├── data
├── doc
├── examples
@@ -134,10 +129,10 @@ The MFEM source code has the following structure:
└── tests
├── convergence
├── gitlab
├── mem_manager
├── par-mesh-format
├── scripts
└── unit
└── ...
```
#### Main directories and classes
@@ -368,10 +363,6 @@ Before you can start, you need a GitHub account, here are a few suggestions:
two reviewers to evaluate the changes. The reviewers have 3 weeks to evaluate
the PR and work with the author to implement improvements and fix issues.
- Once the `ready-for-review` label has been applied and reviewers have been
assigned, the PR is considered under review. To help with the review process
there should be no force pushes/rewriting history in the branch.
- After approval, the PR is [tested](#masternext-workflow) for a week with
other approved PRs in the `mfem:next` branch.
@@ -379,20 +370,16 @@ Before you can start, you need a GitHub account, here are a few suggestions:
`mfem:next`, see the [README](tests/scripts/README) file in that directory
for more details.
- Track the GitHub Actions and Appveyor [continuous integration](#automated-testing)
- Track the Travis CI, Github Actions and Appveyor [continuous integration](#automated-testing)
builds at the end of the PR. These should generally run clean, so address any
errors as soon as possible. Please ask if you are unsure how to do that.
- Note that some tests, such as the `branch-history` check in GitHub Actions
are safeguards that are allowed to fail in certain cases.
- Note that some tests, such as the `branch-history` check in Travis and Github
Actions are safeguards that are allowed to fail in certain cases.
- Other tests, such as the `code-style`, `documentation` and `gitignore`
checks in GitHub Actions enforce MFEM-specific rules which are explained in
the error messages and the `tests/scripts` directory.
- Also note that the tests `branch-history` and `repos-checks` found in GitHub
Actions can be triggered automatically before each push using git hooks. See
the [git hooks README](config/githooks/README.md) for a detailed explanation.
checks in Travis and Github Actions enforce MFEM-specific rules which are
explained in the error messages and the `tests/scripts` directory.
- If triggered, track the status of the LLNL GitLab tests. If failing, ask
one of the _LLNL developers_ for details.
@@ -412,7 +399,7 @@ Before a PR can be merged, it should satisfy the following:
- [ ] Does `make` or `cmake` have a new target?
- [ ] Did the requirements or the installation process change? *(rare)*
- [ ] Update continuous integration server configurations if necessary (e.g. with new version requirements for each of MFEM's dependencies)
- [ ] `.github`
- [ ] `.travis.yml`
- [ ] `.appveyor.yml`
- [ ] Update `.gitignore`:
- [ ] Check if `make distclean; git status` shows any files that were generated from the source by the project (not an IDE) but we don't want to track in the repository.
@@ -529,7 +516,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
- [ ] `doc/CodeDocumentation.conf.in`
- [ ] Check that version requirements for each of MFEM's dependencies are documented in `INSTALL` and up-to-date
- [ ] Check that continuous integration server configurations reflect the dependency version requirements of the new release
- [ ] `.github`
- [ ] `.travis.yml`
- [ ] `.appveyor.yml`
- [ ] Update the `CHANGELOG` to organize all release contributions
- [ ] Review the whole source code once over
@@ -591,17 +578,14 @@ MFEM uses a `master`/`next`-branch workflow as described below:
MFEM has several levels of automated testing running on GitHub, as well as on
local Mac and Linux workstations, and Livermore Computing clusters at LLNL.
In addition, developers can set local git hooks to run some quick checks on
commit or push, see the [README](config/githooks/README.md) in the `config/githooks`
directory.
### Linux and Mac smoke tests
We use GitHub Actions to drive the default tests on the `master` and `next`
branches. See the `.github/workflows` files and the logs at
[https://github.com/mfem/mfem/actions](https://github.com/mfem/mfem/actions).
We use Travis CI and Github Actions to drive the default tests on the `master`
and `next` branches. See the `.travis` file and the logs at
[https://travis-ci.org/mfem/mfem](https://travis-ci.org/mfem/mfem).
Testing using GitHub Actions should be kept lightweight, as there is a time
constraint on jobs. Two virtual machines are configured - Mac (OS X) and Linux.
Testing using Travis CI and Github Actions should be kept lightweight, as there
is a time constraint on jobs. Two virtual machines are configured - Mac (OS X)
and Linux.
- Tests on the `master` branch are triggered whenever a PR is issued on this branch.
- Tests on the `next` branch are currently scheduled to run each night.
+58 -25
View File
@@ -58,7 +58,6 @@ following package managers:
- Spack, https://github.com/spack/spack
- OpenHPC, http://openhpc.community
- Conda-forge, https://conda-forge.org (pre-built binaries linked with OpenMPI/MPICH, hypre, and METIS)
- Homebrew/Science, https://github.com/Homebrew/homebrew-science (deprecated)
We also recommend downloading and building the MFEM-based GLVis visualization
@@ -463,6 +462,27 @@ MFEM_USE_HIOP = YES/NO
Enable the usage of HiOp (https://github.com/LLNL/hiop) in MFEM. HiOp is an
HPC solver for nonlinear optimization problems.
MFEM_USE_ADEPT = YES/NO
Enable automatic differentiation using the ADEPT library.
(http://www.met.reading.ac.uk/clouds/adept)
Please, compile the library with flag --disable-openmp.
MFEM_USE_FADBADPP = YES/NO
Enable automatic differentiation using the FADBAD++ library.
www.fadbad.com/fadbad.html
MFEM_USE_CODIPACK = YES/NO
Enable automatic differentiation using the CoDiPack library.
www.scicomp.uni-kl.de/codi/
MFEM_USE_EIGEN = YES/NO
Enable the Eigen library.
https://gitlab.com/libeigen/eigen
MFEM_USE_ADFORWARD = YES/NO
Enable forward mode for AD packages. This option is valid
only if the AD package supports two modes (backward/forward).
MFEM_USE_CUDA = YES/NO
Enables support for CUDA devices in MFEM. CUDA is a parallel computing
platform and programming model for general computing on graphical processing
@@ -474,7 +494,7 @@ MFEM_USE_HIP = YES/NO
Enables support for AMD devices in MFEM. HIP is a heterogeneous-compute
interface for portability developed by AMD that can target both AMD and
NVIDIA GPUs. The variable HIP_ARCH is used to specify the AMD GPU processor
used during compilation (by default, HIP_ARCH=gfx900). When enabled, this
used during compilation (by default, HIP_ARCH=gfx900). When enabled, this
option uses the HIP_* build options, see below.
MFEM_USE_RAJA = YES/NO
@@ -516,13 +536,6 @@ MFEM_USE_CALIPER = YES/NO
profiling at runtime with Caliper's configuration API. Alternatively, one
can configure Caliper through environment variables or config files.
MFEM_USE_FMS = YES/NO
Enables support for the FMS library which consists of the DataCollection
sub-class mfem::FMSDataCollection for I/O in FMS formats, see the header file
fem/fmsdatacollection.hpp. In addition, this option enables in-memory
convetion routines between FMS's FmsDataCollection structure and MFEM's
DataCollection class, see the header file fem/fmsconvert.hpp.
MFEM_BUILD_TAG = (any value)
An optional tag to characterize the build. Exported to config/config.mk.
Can be used to identify the MFEM build from other makefiles.
@@ -547,9 +560,8 @@ The specific libraries and their options are:
See also the "Specific options for hypre" section at the end of this file.
URL: https://github.com/hypre-space/hypre and https://www.llnl.gov/casc/hypre
Options: HYPRE_OPT, HYPRE_LIB.
Versions: HYPRE >= 2.10.0b (HYPRE built without CUDA)
HYPRE >= 2.20.0 (HYPRE built with '--enable-mixedint')
HYPRE >= 2.22.1 (HYPRE built with CUDA)
Versions: HYPRE >= 2.10.0b,
HYPRE >= 2.20.0 for '--enable-mixedint' support.
- METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
MFEM_USE_METIS_5 = YES (default is to use METIS 4).
@@ -619,11 +631,10 @@ The specific libraries and their options are:
Versions: STRUMPACK >= 3.0.0.
- Ginkgo (optional), used when MFEM_USE_GINKGO = YES. Note that Ginkgo needs a
C++ compiler that supports the C++-14 standard. For additional requirements
and dependencies of specific modules, see the Ginkgo webpage below.
C++ compiler that supports the C++-11 standard. For additional requirements
and dependencies of specific modules see the Ginkgo webpage below.
URL: https://ginkgo-project.github.io
Options: GINKGO_OPT, GINKGO_LIB, GINKGO_DIR, GINKGO_BUILD_TYPE (Release or Debug).
Versions: Ginkgo >= 1.4.0.
Options: GINKGO_OPT (Not used), GINKGO_LIB.
- AmgX (optional), used when MFEM_USE_AMGX = YES.
URL: https://github.com/NVIDIA/AMGX
@@ -694,6 +705,26 @@ The specific libraries and their options are:
Options: HIOP_OPT, HIOP_LIB.
Versions: HIOP >= 0.4.
- ADEPT (optional), used with MFEM_USE_ADEPT = YES
URL: www.met.reading.ac.uk/clouds/adept/
Options: ADEPT_OPT, ADEPT_LIB
Versions: 1.1 and 2.0.5
- FADBAD++ (optiobal), used with MFEM_USE_FADBADPP = YES
URL: www.fadbad.com/fadbad.html
Options: FADBADPP_OPT
Versions: 2.1
- CoDiPack (optiobal), used with MFEM_USE_CODIPACK = YES
URL: https://www.scicomp.uni-kl.de/codi/
Options: CODIPACK_OPT
Versions: 1.9.3
- Eigen (optiobal), used with MFEM_USE_EIGEN = YES
URL: https://gitlab.com/libeigen/eigen
Options: EIGEN_OPT
Versions: 3.3.9
- GSLIB (optional), used when MFEM_USE_GSLIB = YES. The gslib library must be
built prior to the MFEM build, as follows: download gslib-1.0.7, untar it at
the same level as MFEM and create a symbolic link: "ln -s gslib-1.0.7 gslib".
@@ -761,11 +792,6 @@ The specific libraries and their options are:
URL: https://zlib.net
Options: ZLIB_OPT, ZLIB_LIB.
- FMS (optional), used when MFEM_USE_FMS = YES.
URL: https://github.com/CEED/FMS
Options: FMS_OPT, FMS_LIB.
Versions: FMS >= 0.2.
Building with CMake
===================
The MFEM build system consists of two steps: configuration and compilation.
@@ -890,6 +916,11 @@ MFEM_USE_MPFR
MFEM_USE_ZLIB
MFEM_USE_PUMI
MFEM_USE_HIOP
MFEM_USE_ADEPT
MFEM_USE_FADBADPP
MFEM_USE_CODIPACK
MFEM_USE_EIGEN
MFEM_USE_ADFORWARD
MFEM_USE_CUDA
MFEM_USE_OCCA
MFEM_USE_CEED
@@ -897,7 +928,6 @@ MFEM_USE_RAJA
MFEM_USE_UMPIRE
MFEM_USE_SIDRE
MFEM_USE_CALIPER
MFEM_USE_FMS
The following options are CMake specific:
@@ -947,12 +977,15 @@ The CMake build system adds auto-detection for the following packages/libraries:
- POSIXCLOCKS
- PUMI
- HIOP
- ADEPT
- FADBAD++
- CoDiPack
- Eigen
- OCCA
- RAJA
- UMPIRE
- AXOM - Used when MFEM_USE_SIDRE is enabled
- CALIPER
- FMS
The following built-in CMake packages are also used:
@@ -970,7 +1003,7 @@ config/config.hpp.in:
cp config/config.hpp.in config/_config.hpp
The file config/_config.hpp can then be edited to enable desired options. The
The file config/_config.hpp can then be edited to enable desired options. The
MFEM library is simply a combination of all object files obtained by compiling
the .cpp source files in the source directories: general, linalg, mesh, and fem.
@@ -978,7 +1011,7 @@ the .cpp source files in the source directories: general, linalg, mesh, and fem.
Specifying an MPI job launcher
==============================
By default, MFEM will use 'mpirun -np #' to launch any of its parallel tests or
miniapps, where # is the number of MPI tasks. An alternate MPI launcher can be
miniapps, where # is the number of MPI tasks. An alternate MPI launcher can be
provided by setting the MFEM_MPIEXEC and MFEM_MPIEXEC_NP config variables.
MFEM will expect the launcher command, plus the command line option to allow it
-4
View File
@@ -256,10 +256,6 @@ IF (DEFINED TPL_ENABLE_SIDRE)
SET(MFEM_USE_SIDRE ${TPL_ENABLE_SIDRE} CACHE BOOL "Enable Axom/Sidre usage" FORCE)
ENDIF()
IF (DEFINED TPL_ENABLE_FMS)
SET(MFEM_USE_FMS ${TPL_ENABLE_FMS} CACHE BOOL "Enable FMS usage" FORCE)
ENDIF()
IF (DEFINED TPL_ENABLE_CONDUIT)
SET(MFEM_USE_CONDUIT ${TPL_ENABLE_CONDUIT} CACHE BOOL "Enable Conduit usage" FORCE)
ENDIF()
+5 -1
View File
@@ -44,7 +44,6 @@ set(MFEM_USE_PETSC @MFEM_USE_PETSC@)
set(MFEM_USE_SLEPC @MFEM_USE_SLEPC@)
set(MFEM_USE_MPFR @MFEM_USE_MPFR@)
set(MFEM_USE_SIDRE @MFEM_USE_SIDRE@)
set(MFEM_USE_FMS @MFEM_USE_FMS@)
set(MFEM_USE_CONDUIT @MFEM_USE_CONDUIT@)
set(MFEM_USE_PUMI @MFEM_USE_PUMI@)
set(MFEM_USE_CUDA @MFEM_USE_CUDA@)
@@ -54,6 +53,11 @@ set(MFEM_USE_CEED @MFEM_USE_CEED@)
set(MFEM_USE_UMPIRE @MFEM_USE_UMPIRE@)
set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
set(MFEM_USE_ADEPT @MFEM_USE_ADEPT@)
set(MFEM_USE_FADBADPP @MFEM_USE_FADBADPP@)
set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
set(MFEM_USE_EIGEN @MFEM_USE_EIGEN@)
set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
set(MFEM_CXX_COMPILER "@CMAKE_CXX_COMPILER@")
+15 -3
View File
@@ -119,9 +119,6 @@
// Enable the use of SIMD in the high performance templated classes
#cmakedefine MFEM_USE_SIMD
// Enable MFEM functionality based on the FMS library
#cmakedefine MFEM_USE_FMS
// Enable MFEM functionality based on Conduit
#cmakedefine MFEM_USE_CONDUIT
@@ -172,6 +169,21 @@
// library.
#cmakedefine MFEM_USE_SIMMETRIX
// use ADEPT library for AD
#cmakedefine MFEM_USE_ADEPT
// use FADBAD++ library for AD
#cmakedefine MFEM_USE_FADBADPP
// use CoDiPack library for AD
#cmakedefine MFEM_USE_CODIPACK
// use Eigen library
#cmakedefine MFEM_USE_EIGEN
// use forward mode for automatic differentiation
#cmakedefine MFEM_USE_ADFORWARD
// Enable interface to the MKL CPardiso library.
#cmakedefine MFEM_USE_MKL_CPARDISO
+23
View File
@@ -0,0 +1,23 @@
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
# See file COPYRIGHT for details.
#
# This file is part of the MFEM library. For more information and source code
# availability see http://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the GNU Lesser General Public License (as published by the Free
# Software Foundation) version 2.1 dated February 1999.
# Sets the following variables:
# - ADEPT_FOUND
# - ADEPT_INCLUDE_DIRS
# - ADEPT_LIBRARIES
include(MfemCmakeUtilities)
mfem_find_package(ADEPT ADEPT ADEPT_DIR
"include" "adept.hpp"
"lib" "libadept.so"
"Paths to headers required by ADEPT."
"Libraries required by ADEPT.")
+23
View File
@@ -0,0 +1,23 @@
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
# See file COPYRIGHT for details.
#
# This file is part of the MFEM library. For more information and source code
# availability see http://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the GNU Lesser General Public License (as published by the Free
# Software Foundation) version 2.1 dated February 1999.
# Sets the following variables:
# - CODIPACK_FOUND
# - CODIPACK_INCLUDE_DIRS
# - CODIPACK_LIBRARIES
include(MfemCmakeUtilities)
mfem_find_package(CODIPACK CODIPACK CODIPACK_DIR
"include" "codi.h"
"lib" ""
"Paths to headers required by CODIPACK."
"Libraries required by CODIPACK.")
+23
View File
@@ -0,0 +1,23 @@
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
# See file COPYRIGHT for details.
#
# This file is part of the MFEM library. For more information and source code
# availability see http://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the GNU Lesser General Public License (as published by the Free
# Software Foundation) version 2.1 dated February 1999.
# Sets the following variables:
# - EIGEN_FOUND
# - EIGEN_INCLUDE_DIRS
# - EIGEN_LIBRARIES
include(MfemCmakeUtilities)
mfem_find_package(EIGEN EIGEN EIGEN_DIR
"include" "codi.h"
"lib" ""
"Paths to headers required by EIGEN."
"Libraries required by EIGEN.")
+23
View File
@@ -0,0 +1,23 @@
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
# See file COPYRIGHT for details.
#
# This file is part of the MFEM library. For more information and source code
# availability see http://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the GNU Lesser General Public License (as published by the Free
# Software Foundation) version 2.1 dated February 1999.
# Sets the following variables:
# - FADBADPP_FOUND
# - FADBADPP_INCLUDE_DIRS
# - FADBADPP_LIBRARIES
include(MfemCmakeUtilities)
mfem_find_package(FADBADPP FADBADPP FADBADPP_DIR
"include" "fadiff.h"
"lib" ""
"Paths to headers required by FADBADPP."
"Libraries required by FADBADPP.")
-20
View File
@@ -1,20 +0,0 @@
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Defines the following variables:
# - FMS_FOUND
# - FMS_LIBRARIES
# - FMS_INCLUDE_DIRS
include(MfemCmakeUtilities)
mfem_find_package(FMS FMS FMS_DIR
"include" fms.h "lib" fms
"Paths to headers required by FMS." "Libraries required by FMS.")
@@ -47,7 +47,6 @@ endfunction()
macro(mfem_add_executable NAME)
if (MFEM_USE_HIP)
hip_add_executable(${NAME} ${ARGN})
set_target_properties(${NAME} PROPERTIES LINKER_LANGUAGE CXX)
else()
add_executable(${NAME} ${ARGN})
endif()
+15 -3
View File
@@ -117,9 +117,6 @@
// Enable the use of SIMD in the high performance templated classes
// #define MFEM_USE_SIMD
// Enable FMS support
// #define MFEM_USE_FMS
// Enable Conduit support
// #define MFEM_USE_CONDUIT
@@ -177,6 +174,21 @@
// library.
// #define MFEM_USE_SIMMETRIX
// use ADEPT library for AD
// #define MFEM_USE_ADEPT
// use FADBAD++ library for AD
// #define MFEM_USE_FADBADPP
// use CoDiPack library for AD
// #define MFEM_USE_CODIPACK
// use Eigen library
// #define MFEM_USE_EIGEN
// use forward mode for automatic differentiation
// #define MFEM_USE_ADFORWARD
// Enable interface to the MKL CPardiso library.
// #define MFEM_USE_MKL_CPARDISO
+5 -1
View File
@@ -43,10 +43,14 @@ MFEM_USE_PETSC = @MFEM_USE_PETSC@
MFEM_USE_SLEPC = @MFEM_USE_SLEPC@
MFEM_USE_MPFR = @MFEM_USE_MPFR@
MFEM_USE_SIDRE = @MFEM_USE_SIDRE@
MFEM_USE_FMS = @MFEM_USE_FMS@
MFEM_USE_CONDUIT = @MFEM_USE_CONDUIT@
MFEM_USE_PUMI = @MFEM_USE_PUMI@
MFEM_USE_HIOP = @MFEM_USE_HIOP@
MFEM_USE_ADEPT = @MFEM_USE_ADEPT@
MFEM_USE_FADBADPP = @MFEM_USE_FADBADPP@
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
MFEM_USE_EIGEN = @MFEM_USE_EIGEN@
MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
MFEM_USE_GSLIB = @MFEM_USE_GSLIB@
MFEM_USE_CUDA = @MFEM_USE_CUDA@
MFEM_USE_HIP = @MFEM_USE_HIP@
+19 -14
View File
@@ -45,7 +45,6 @@ option(MFEM_USE_PETSC "Enable PETSc support." OFF)
option(MFEM_USE_SLEPC "Enable SLEPc support." OFF)
option(MFEM_USE_MPFR "Enable MPFR usage." OFF)
option(MFEM_USE_SIDRE "Enable Axom/Sidre usage" OFF)
option(MFEM_USE_FMS "Enable FMS usage" OFF)
option(MFEM_USE_CONDUIT "Enable Conduit usage" OFF)
option(MFEM_USE_PUMI "Enable PUMI" OFF)
option(MFEM_USE_HIOP "Enable HiOp" OFF)
@@ -56,6 +55,11 @@ option(MFEM_USE_CEED "Enable CEED" OFF)
option(MFEM_USE_UMPIRE "Enable Umpire" OFF)
option(MFEM_USE_SIMD "Enable use of SIMD intrinsics" OFF)
option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
option(MFEM_USE_ADEPT "Enable AD using ADEPT" OFF)
option(MFEM_USE_FADBADPP "Enable AD using FADBAD++" OFF)
option(MFEM_USE_CODIPACK "Enable AD using CoDiPack" OFF)
option(MFEM_USE_EIGEN "Enable Eigen" OFF)
option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
@@ -97,11 +101,6 @@ set(HYPRE_DIR "${MFEM_DIR}/../hypre/src/hypre" CACHE PATH
# If hypre was compiled to depend on BLAS and LAPACK:
# set(HYPRE_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
# "Packages that HYPRE depends on.")
if (MFEM_USE_CUDA)
# This is only necessary when hypre is built with cuda:
set(HYPRE_REQUIRED_LIBRARIES "-lcusparse" "-lcurand" CACHE STRING
"Libraries that HYPRE depends on.")
endif()
set(METIS_DIR "${MFEM_DIR}/../metis-4.0" CACHE PATH "Path to the METIS library.")
@@ -138,10 +137,10 @@ set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.2.0" CACHE PATH
"Path to the MUMPS library.")
# Packages required by MUMPS, depending on how it was compiled.
set(MUMPS_REQUIRED_PACKAGES "MPI" "BLAS" "METIS" "ScaLAPACK" CACHE STRING
"Additional packages required by MUMPS.")
"Additional packages required by MUMPS.")
# If the MPI package does not find all required Fortran libraries:
# set(MUMPS_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
# "Additional libraries required by MUMPS.")
# "Additional libraries required by MUMPS.")
set(STRUMPACK_DIR "${MFEM_DIR}/../STRUMPACK-build" CACHE PATH
"Path to the STRUMPACK library.")
@@ -193,12 +192,6 @@ set(SLEPC_ARCH "arch-linux2-c-debug" CACHE STRING "SLEPC build architecture.")
set(MPFR_DIR "" CACHE PATH "Path to the MPFR library.")
set(FMS_DIR "${MFEM_DIR}/../fms" CACHE PATH
"Path to the FMS library.")
# If FMS is built with Conduit:
# set(FMS_REQUIRED_PACKAGES "Conduit/relay" CACHE STRING
# "Additional packages required by FMS.")
set(CONDUIT_DIR "${MFEM_DIR}/../conduit" CACHE PATH
"Path to the Conduit library.")
@@ -230,6 +223,18 @@ set(BLAS_LIBRARIES "" CACHE STRING "The BLAS library.")
set(LAPACK_INCLUDE_DIRS "" CACHE STRING "Path to LAPACK headers.")
set(LAPACK_LIBRARIES "" CACHE STRING "The LAPACK library.")
set(ADEPT_INCLUDE_DIRS "${MFEM_DIR}/../adept-1.1/include" CACHE STRING "Path to ADEPT headers.")
set(ADEPT_LIBRARIES "-L${MFEM_DIR}/../adept-1.1/lib -ladept" CACHE STRING "The ADEPT library.")
set(FADBADPP_INCLUDE_DIRS "${MFEM_DIR}/../FADBAD++" CACHE STRING "Path to FADBAD++ headers.")
set(FADBADPP_LIBRARIES "")
set(CODIPACK_INCLUDE_DIRS "${MFEM_DIR}/../CoDiPack/inlude" CACHE STRING "Path to CoDoPack headers.")
set(CODIPACK_LIBRARIES "")
set(EIGEN_INCLUDE_DIRS "${MFEM_DIR}/../Eigen/" CACHE STRING "Path to Eigen headers.")
set(EIGEN_LIBRARIES "")
# Some useful variables:
set(CMAKE_SKIP_PREPROCESSED_SOURCE_RULES ON) # Skip *.i rules
set(CMAKE_SKIP_ASSEMBLY_SOURCE_RULES ON) # Skip *.s rules
+27 -29
View File
@@ -18,9 +18,6 @@
# Some choices below are based on the OS type:
NOTMAC := $(subst Darwin,,$(shell uname -s))
ETAGS_BIN = $(shell command -v etags 2> /dev/null)
EGREP_BIN = $(shell command -v egrep 2> /dev/null)
CXX = g++
MPICXX = mpicxx
@@ -136,7 +133,6 @@ MFEM_USE_PETSC = NO
MFEM_USE_SLEPC = NO
MFEM_USE_MPFR = NO
MFEM_USE_SIDRE = NO
MFEM_USE_FMS = NO
MFEM_USE_CONDUIT = NO
MFEM_USE_PUMI = NO
MFEM_USE_HIOP = NO
@@ -150,6 +146,11 @@ MFEM_USE_CALIPER = NO
MFEM_USE_UMPIRE = NO
MFEM_USE_SIMD = NO
MFEM_USE_ADIOS2 = NO
MFEM_USE_ADEPT = NO
MFEM_USE_FADBADPP = NO
MFEM_USE_CODIAPCK = NO
MFEM_USE_EIGEN = NO
MFEM_USE_ADFORWARD = NO
MFEM_USE_MKL_CPARDISO = NO
# MPI library compile and link flags
@@ -175,10 +176,6 @@ LIBUNWIND_LIB = $(if $(NOTMAC),-lunwind -ldl,)
HYPRE_DIR = @MFEM_DIR@/../hypre/src/hypre
HYPRE_OPT = -I$(HYPRE_DIR)/include
HYPRE_LIB = -L$(HYPRE_DIR)/lib -lHYPRE
ifeq (YES,$(MFEM_USE_CUDA))
# This is only necessary when hypre is built with cuda:
HYPRE_LIB += -lcusparse -lcurand
endif
# METIS library configuration
ifeq ($(MFEM_USE_SUPERLU)$(MFEM_USE_STRUMPACK)$(MFEM_USE_MUMPS),NONONO)
@@ -293,23 +290,9 @@ STRUMPACK_LIB = -L$(STRUMPACK_DIR)/lib -lstrumpack $(MPI_FORTRAN_LIB)\
# Ginkgo library configuration (currently not needed)
GINKGO_DIR = @MFEM_DIR@/../ginkgo/install
GINKGO_BUILD_TYPE=Release
ifeq ($(MFEM_USE_GINKGO),YES)
BASE_FLAGS = -std=c++14
endif
GINKGO_OPT = -isystem $(GINKGO_DIR)/include
GINKGO_LIB_DIR = $(sort $(dir $(wildcard $(GINKGO_DIR)/lib*/libginkgo*.a $(GINKGO_DIR)/lib*/libginkgo*.so $(GINKGO_DIR)/lib*/libginkgo*.dylib $(GINKGO_DIR)/lib*/libginkgo*.dll)))
ALL_GINKGO_LIBS_DEBUG = $(notdir $(basename $(wildcard $(GINKGO_DIR)/lib*/libginkgo*d.a $(GINKGO_DIR)/lib*/libginkgo*d.so $(GINKGO_DIR)/lib*/libginkgo*d.dylib $(GINKGO_DIR)/lib*/libginkgo*d.dll)))
ALL_GINKGO_LIBS = $(notdir $(basename $(wildcard $(GINKGO_DIR)/lib*/libginkgo*.a $(GINKGO_DIR)/lib*/libginkgo*.so $(GINKGO_DIR)/lib*/libginkgo*.dylib $(GINKGO_DIR)/lib*/libginkgo*.dll)))
ALL_GINKGO_LIBS_RELEASE = $(filter-out $(ALL_GINKGO_LIBS_DEBUG),$(ALL_GINKGO_LIBS))
GINKGO_LINK = $(subst libginkgo,-lginkgo,$(ALL_GINKGO_LIBS_RELEASE))
ifeq ($(GINKGO_BUILD_TYPE),Debug)
ifneq (,$(ALL_GINKGO_LIBS_DEBUG))
GINKGO_LINK = $(subst libginkgo,-lginkgo,$(ALL_GINKGO_LIBS_DEBUG))
endif
else
endif
GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_LIB_DIR) -L$(GINKGO_LIB_DIR) $(GINKGO_LINK)
GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_DIR)/lib -L$(GINKGO_DIR)/lib -lginkgo\
-lginkgo_omp -lginkgo_cuda -lginkgo_reference
# AmgX library configuration
AMGX_DIR = @MFEM_DIR@/../amgx
@@ -362,11 +345,6 @@ endif
MPFR_OPT =
MPFR_LIB = -lmpfr
# FMS and required libraries configuration
FMS_DIR = $(MFEM_DIR)/../fms
FMS_OPT = -I$(FMS_DIR)/include
FMS_LIB = -Wl,-rpath,$(FMS_DIR)/lib -L$(FMS_DIR)/lib -lfms
# Conduit and required libraries configuration
CONDUIT_DIR = @MFEM_DIR@/../conduit
CONDUIT_OPT = -I$(CONDUIT_DIR)/include/conduit
@@ -406,6 +384,26 @@ HIOP_DIR = @MFEM_DIR@/../hiop/install
HIOP_OPT = -I$(HIOP_DIR)/include
HIOP_LIB = -L$(HIOP_DIR)/lib -lhiop $(LAPACK_LIB)
# ADEPT
ADEPT_DIR = @MFEM_DIR@/../adept-1.1
ADEPT_OPT = -I$(ADEPT_DIR)/include
ADEPT_LIB = -L$(ADEPT_DIR)/lib -ladept
# FADBAD++
FADBADPP_DIR = @MFEM_DIR@/../FADBAD++
FADBADPP_OPT = -I$(FADBADPP_DIR)
FADBADPP_LIB = -L.
# CoDiPack
CODIPACK_DIR = @MFEM_DIR@/../CoDiPack
CODIPACK_OPT = -I$(CODIPACK_DIR)
CODIPACK_LIB = -L.
# Eigen
EIGEN_DIR = @MFEM_DIR@/../Eigen
EIGEN_OPT = -I$(EIGEN_DIR)
EIGEN_LIB = -L.
# GSLIB library
GSLIB_DIR = @MFEM_DIR@/../gslib/build
GSLIB_OPT = -I$(GSLIB_DIR)/include
-41
View File
@@ -1,41 +0,0 @@
Finite Element Discretization Library
__
_ __ ___ / _| ___ _ __ ___
| '_ ` _ \ | |_ / _ \| '_ ` _ \
| | | | | || _|| __/| | | | | |
|_| |_| |_||_| \___||_| |_| |_|
https://mfem.org
This directory contains recommended git hooks, which are scripts that can be
used to improve your development experience with MFEM:
### The hooks
* `pre-commit` is a hook that will be applied before each commit and run
`astyle` on the code. This will ensure that your changes comply with the MFEM
code styling guidelines.
* `pre-push` is a hook that will be applied before each push to run a quick set
of tests that verify that your files headers are in compliance, and that you did
not add any large files to the repo.
### Setup
To setup the git hooks, run `make hooks`, which creates symlinks to the hooks in
the `.git/hooks` directory. Individual hooks can be enabled by manually creating
symlinks.
(You may also copy the scripts directly and customize them further, but this way
you may miss additional updates in the future.)
### Failures
The `branch-history` check can fail in some cases when the history is OK. For
example, when a large number of files were modified for a legitimate reason, or
when a picture was added for documentation.
If that is the case, make sure the failure is indeed justified, and rerun the
push command with the `--no-verify` option. This will skip the hooks, allowing
you to push those changes.
-4
View File
@@ -1,4 +0,0 @@
#!/bin/sh
# Apply automated code formatting
make -C $(git rev-parse --show-toplevel) style
-107
View File
@@ -1,107 +0,0 @@
#!/bin/bash
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
option=${1:-""}
if [[ "${option}" == "--help" ]]; then
echo "This script runs checks on the repository."
echo "It has 2 modes: with and without an option."
echo ""
echo "Options are used in GitHub Actions and can be:"
echo " --copyright"
echo " --license"
echo " --release"
echo " --style"
echo " --history"
echo ""
echo "As a githook, the script is used without options."
echo "In that case, it will run all the checks except style."
echo ""
echo "Use --help to print this help message."
fi
cd $(git rev-parse --show-toplevel)
# copyright check
copyright=true
if [[ "${option}" == "--copyright" || "${option}" == "" ]]; then
if git grep -l "^\(#\|//\).*\(\-2020\|\ 2010,\)" > matches.txt; then
echo "Please update the following files to Copyright (c) 2010-2021:"
cat matches.txt
copyright=false
fi
fi
# license check
license=true
if [[ "${option}" == "--license" || "${option}" == "" ]]; then
if git grep -li "^\(#\|//\).*GNU\ Lesser\ General\ Public\ License" > matches.txt; then
echo "Please update the following files to the BSD-3 license:"
cat matches.txt
license=false
fi
fi
# release check
release=true
if [[ "${option}" == "--release" || "${option}" == "" ]]; then
if git grep -l "^\(#\|//\).*LLNL\-CODE\-443211" > matches.txt
then
echo "Please update the following files to LLNL-CODE-806117:"
cat matches.txt
release=false
fi
fi
# wrap-up
code=0
if ! $copyright ; then
echo "copyright check failed, unroll log for details"
code=1
fi
if ! $license ; then
echo "license check failed, unroll log for details"
code=1
fi
if ! $release ; then
echo "release check failed, unroll log for details"
code=1
fi
# `code-style` is not just a check, it will actually reformat the code if
# necessary. This means that if one pushes while the repo is in dirty state
# (changes not staged), those changes may be mixed with format changes.
# To activate this, you will need to hard-copy this hook script in the hook
# directory and uncomment only then. (See README.md)
#
## style check
#if [[ "${option}" == "--style" || "${option}" == "" ]]; then
if [[ "${option}" == "--style" ]]; then
if which astyle && [[ "$(astyle --version)" == "Artistic Style Version 2.05.1" ]]; then
cd tests/scripts
if ! ./runtest code-style; then code=1; fi
cd -
else
echo "Warning: astyle not found or version is not 2.05.1"
fi
fi
# branch-history
if [[ "${option}" == "--history" || "${option}" == "" ]]; then
git fetch origin master:master
cd tests/scripts
if ! ./runtest branch-history; then code=1; fi
cd -
fi
exit $code
+7 -32
View File
@@ -39,7 +39,7 @@ set -- $$($(1) $(SHELL) -c "$(2)" 2>&1); while [ "$$#" -gt 3 ]; do shift; done
endef
define TIMECMD.NOTGNU
set -- $$($(1) -l $(SHELL) -c "{ $(2); } > /dev/null 2>&1" 2>&1; echo $$?); \
set -- "$$1"s "$$(($$7/1024))"kB "$${!#}"
set -- "$$1"s "$$(($$7/1024))"kB "$${60}"
endef
define TIMECMD.BASH
TIMEFORMAT=$$'%3Rs'; \
@@ -57,27 +57,22 @@ TIMECMD := $(word 1,$(TIMECMD))
ifneq (,$(filter test%,$(MAKECMDGOALS)))
MAKEFLAGS += -k
endif
# Test runs of the examples/miniapps with parameters - check exit code:
# 0 means success, 255 means the test was skipped, anything else means error
# Test runs of the examples/miniapps with parameters - check exit code
mfem-test = \
printf " $(3) [$(2) $(1) ... ]: "; \
$(call $(TIMEFUN),$(TIMECMD),$(2) ./$(1) $(if $(5),,-no-vis )$(4) \
> $(1).stderr 2>&1); \
err="$$3"; \
if [ "$$3" = 0 ]; then $(PRINT_OK); \
else if [ "$$3" = 255 ]; then $(PRINT_SKIP); err=0; \
else $(PRINT_FAILED); cat $(1).stderr; fi; fi; \
rm -f $(1).stderr; exit $$err
if [ "$$3" = 0 ]; \
then $(PRINT_OK); else $(PRINT_FAILED); cat $(1).stderr; fi; \
rm -f $(1).stderr; exit $$3
# Test runs of the examples/miniapps - check exit code and if a file exists
# See mfem-test for the interpretation of the error code
mfem-test-file = \
printf " $(3) [$(2) $(1) ... ]: "; \
$(call $(TIMEFUN),$(TIMECMD),$(2) ./$(1) -no-vis > $(1).stderr 2>&1); \
err="$$3"; \
if [ "$$3" = 0 ] && [ -e $(4) ]; then $(PRINT_OK); \
else if [ "$$3" = 255 ] && [ -e $(4) ]; then $(PRINT_SKIP); err=0; \
else $(PRINT_FAILED); cat $(1).stderr; err=64; fi; fi; \
if [ "$$3" = 0 ] && [ -e $(4) ]; \
then $(PRINT_OK); else $(PRINT_FAILED); cat $(1).stderr; err=64; fi; \
rm -f $(1).stderr; exit $$err
.PHONY: test test-par-YES test-par-NO test-ser test-par test-clean test-print
@@ -85,26 +80,6 @@ mfem-test-file = \
# What sets of tests to run in serial and parallel
test-par-YES: $(PAR_$(MFEM_TESTS):=-test-par) $(SEQ_$(MFEM_TESTS):=-test-seq)
test-par-NO: $(SEQ_$(MFEM_TESTS):=-test-seq)
ifeq ($(MFEM_USE_CUDA),YES)
.PHONY: test-par-YES-cuda test-par-NO-cuda test-ser-cuda test-par-cuda test-cuda
test-par-YES: test-par-YES-cuda
test-par-NO: test-par-NO-cuda
test-par-YES-cuda: test-par-cuda test-ser-cuda
test-par-NO-cuda: test-ser-cuda
test-ser-cuda: $(SEQ_DEVICE_$(MFEM_TESTS):=-test-seq-cuda)
test-par-cuda: $(PAR_DEVICE_$(MFEM_TESTS):=-test-par-cuda)
test-cuda: test-par-$(MFEM_USE_MPI)-cuda clean-exec
endif
ifeq ($(MFEM_USE_HIP),YES)
.PHONY: test-par-YES-hip test-par-NO-hip test-ser-hip test-par-hip test-hip
test-par-YES: test-par-YES-hip
test-par-NO: test-par-NO-hip
test-par-YES-hip: test-par-hip test-ser-hip
test-par-NO-hip: test-ser-hip
test-ser-hip: $(SEQ_DEVICE_$(MFEM_TESTS):=-test-seq-hip)
test-par-hip: $(PAR_DEVICE_$(MFEM_TESTS):=-test-par-hip)
test-hip: test-par-$(MFEM_USE_MPI)-hip clean-exec
endif
test-ser: test-par-NO
test-par: test-par-YES
test: all test-par-$(MFEM_USE_MPI) clean-exec
-9
View File
@@ -1,9 +0,0 @@
MFEM INLINE mesh v1.0
type = pyramid
nx = 4
ny = 4
nz = 4
sx = 1.0
sy = 1.0
sz = 1.0
-43
View File
@@ -1,43 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
# PYRAMID = 7
#
dimension
3
elements
2
1 7 4 3 2 1 0
1 7 1 2 3 4 5
boundary
8
1 2 0 2 1
2 2 0 3 2
3 2 0 4 3
4 2 0 1 4
5 2 1 2 5
6 2 2 3 5
7 2 3 4 5
8 2 4 1 5
vertices
6
3
0 0 -1
1 0 0
0 1 0
-1 0 0
0 -1 0
0 0 1
-41
View File
@@ -1,41 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
#
dimension
3
elements
1
1 5 0 1 2 3 4 5 6 7
boundary
6
1 3 3 2 1 0
2 3 0 1 5 4
3 3 1 2 6 5
4 3 2 3 7 6
5 3 3 0 4 7
6 3 4 5 6 7
vertices
8
3
0 0 0
1 0 0
1 1 0
0 1 0
0 0 1
1 0 1
1 1 1
0 1 1
-38
View File
@@ -1,38 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
#
dimension
3
elements
1
1 6 0 1 2 3 4 5
boundary
5
1 2 0 2 1
2 2 3 4 5
3 3 0 1 4 3
4 3 1 2 5 4
5 3 2 0 3 5
vertices
6
3
0 0 0
1 0 0
0 1 0
0 0 1
1 0 1
0 1 1
-38
View File
@@ -1,38 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
# PYRAMID = 7
#
dimension
3
elements
1
1 7 0 1 2 3 4
boundary
5
1 3 3 2 1 0
2 2 0 1 4
3 2 1 2 4
4 2 2 3 4
5 2 3 0 4
vertices
5
3
0 0 0
1 0 0
1 1 0
0 1 0
0 0 1
-31
View File
@@ -1,31 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
#
dimension
1
elements
1
1 1 0 1
boundary
2
1 0 0
2 0 1
vertices
2
1
0
1
-35
View File
@@ -1,35 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
#
dimension
2
elements
1
1 3 0 1 2 3
boundary
4
1 1 0 1
2 1 1 2
3 1 2 3
4 1 3 0
vertices
4
2
0 0
1 0
1 1
0 1
-35
View File
@@ -1,35 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
#
dimension
3
elements
1
1 4 0 1 2 3
boundary
4
1 2 1 2 3
2 2 0 3 2
3 2 0 1 3
4 2 0 2 1
vertices
4
3
0 0 0
1 0 0
0 1 0
0 0 1
-33
View File
@@ -1,33 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
#
dimension
2
elements
1
1 2 0 1 2
boundary
3
1 1 0 1
2 1 1 2
3 1 2 0
vertices
3
2
0 0
1 0
0 1
-246
View File
@@ -1,246 +0,0 @@
FMS: 100
DataCollection/Name: star
DataCollection/NumberOfFieldDescriptors: 1
DataCollection/FieldDescriptors/0/Name: CoordsDescriptor
DataCollection/FieldDescriptors/0/ComponentName: volume
DataCollection/FieldDescriptors/0/Type: 0
DataCollection/FieldDescriptors/0/FixedOrder/Size: 3
DataCollection/FieldDescriptors/0/FixedOrder/Type: FMS_UINT64
DataCollection/FieldDescriptors/0/FixedOrder/Values: [0, 1, 3]
DataCollection/FieldDescriptors/0/NumDofs: 211
DataCollection/NumberOfFields: 1
DataCollection/Fields/0/Name: Coords
DataCollection/Fields/0/LayoutType: 0
DataCollection/Fields/0/NumberOfVectorComponents: 2
DataCollection/Fields/0/FieldDescriptorName: CoordsDescriptor
DataCollection/Fields/0/Data/Size: 422
DataCollection/Fields/0/Data/Type: FMS_DOUBLE
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DataCollection/Mesh/PartitionInfo/Type: FMS_UINT64
DataCollection/Mesh/PartitionInfo/Values: [0, 1]
DataCollection/Mesh/NumDomainNames: 1
DataCollection/Mesh/NumComponents: 1
DataCollection/Mesh/NumTags: 0
DataCollection/Mesh/DomainNames/0/Name: Domain
DataCollection/Mesh/DomainNames/0/NumDomains: 1
DataCollection/Mesh/DomainNames/0/Domains/0/Dimension: 2
DataCollection/Mesh/DomainNames/0/Domains/0/NumVertices: 31
DataCollection/Mesh/DomainNames/0/Domains/0/Entities/0/EntityType: FMS_EDGE
DataCollection/Mesh/DomainNames/0/Domains/0/Entities/0/NumEntities: 50
DataCollection/Mesh/DomainNames/0/Domains/0/Entities/0/Size: 100
DataCollection/Mesh/DomainNames/0/Domains/0/Entities/0/Type: FMS_INT32
DataCollection/Mesh/DomainNames/0/Domains/0/Entities/0/Values: [11, 0, 26,
11, 26, 14,
14, 0, 27,
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17, 0, 28,
17, 28, 20,
20, 0, 29,
20, 29, 23,
23, 0, 30,
23, 30, 11,
11, 1, 12,
1, 26, 12,
12, 3, 13,
3, 26, 13,
13, 2, 14,
2, 15, 2,
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8, 24, 8,
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10, 25, 10,
30, 25, 25, 1]
DataCollection/Mesh/DomainNames/0/Domains/0/Entities/1/EntityType: FMS_QUADRILATERAL
DataCollection/Mesh/DomainNames/0/Domains/0/Entities/1/NumEntities: 20
DataCollection/Mesh/DomainNames/0/Domains/0/Entities/1/Size: 80
DataCollection/Mesh/DomainNames/0/Domains/0/Entities/1/Type: FMS_INT32
DataCollection/Mesh/DomainNames/0/Domains/0/Entities/1/Values: [0, 1, 2,
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41, 11, 41,
42, 43, 43,
44, 45, 13,
45, 46, 47,
48, 14, 48,
49, 15]
DataCollection/Mesh/Components/0/Name: volume
DataCollection/Mesh/Components/0/Dimension: 2
DataCollection/Mesh/Components/0/NumEntities: 20
DataCollection/Mesh/Components/0/Coordinates: Coords
DataCollection/Mesh/Components/0/NumParts: 1
DataCollection/Mesh/Components/0/Parts/0/DomainName: Domain
DataCollection/Mesh/Components/0/Parts/0/DomainID: 0
DataCollection/Mesh/Components/0/Parts/0/FullDomain: Yes
DataCollection/Mesh/Components/0/Relations/Size: 0
DataCollection/Mesh/Components/0/Relations/Type: FMS_UINT64
+1 -1
View File
@@ -38,7 +38,7 @@ PROJECT_NAME = "MFEM"
# could be handy for archiving the generated documentation or if some version
# control system is used.
PROJECT_NUMBER = v4.3.1
PROJECT_NUMBER = v4.2.1
# Using the PROJECT_BRIEF tag one can provide an optional one line description
# for a project that appears at the top of each page and should give viewer a
-1
View File
@@ -189,7 +189,6 @@ namespace mfem {
* - <a class="el" href="field-diff_8cpp_source.html">Field Diff</a>: compare grid functions on different meshes
* - <a class="el" href="field-interp_8cpp_source.html">Field Interp</a>: transfer a grid functions between meshes
* - <a class="el" href="distance_8cpp_source.html">Distance</a>: finite element distance function solver
* - <a class="el" href="diffusion_8cpp_source.html">Shifted Diffusion</a>: shifted boundary diffusion solver
* - <a class="el" href="distance_8cpp_source.html">Block Solvers</a>: comparison of saddle point system solvers
* - <a class="el" href="parheat_8cpp_source.html">Optimization gradients</a>: Gradients of PDE-constrained function
* - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
+2 -31
View File
@@ -84,9 +84,8 @@ foreach(SRC_FILE ${ALL_EXE_SRCS})
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
set(THIS_TEST_OPTIONS "-no-vis")
if (${TEST_NAME} MATCHES "ex0p?")
set(THIS_TEST_OPTIONS)
if (NOT (${TEST_NAME} MATCHES "ex0p?"))
set(THIS_TEST_OPTIONS "-no-vis")
endif()
if (${TEST_NAME} MATCHES "ex10p*")
list(APPEND THIS_TEST_OPTIONS "-tf" "5")
@@ -108,34 +107,6 @@ foreach(SRC_FILE ${ALL_EXE_SRCS})
endif()
endforeach()
# Add CUDA/HIP tests.
set(DEVICE_EXAMPLES
# serial examples with device support:
ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26
# parallel examples with device support:
ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p ex24p ex25p ex26p)
set(MFEM_TEST_DEVICE)
if (MFEM_USE_CUDA)
set(MFEM_TEST_DEVICE "cuda")
elseif (MFEM_USE_HIP)
set(MFEM_TEST_DEVICE "hip")
endif()
if (MFEM_TEST_DEVICE)
foreach(TEST_NAME ${DEVICE_EXAMPLES})
set(THIS_TEST_OPTIONS "-no-vis" "-d" "${MFEM_TEST_DEVICE}")
if (NOT (${TEST_NAME} MATCHES ".*p$"))
add_test(NAME ${TEST_NAME}_${MFEM_TEST_DEVICE}_ser
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
elseif (MFEM_USE_MPI)
add_test(NAME ${TEST_NAME}_${MFEM_TEST_DEVICE}_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:${TEST_NAME}> ${THIS_TEST_OPTIONS}
${MPIEXEC_POSTFLAGS})
endif()
endforeach()
endif()
# If STRUMPACK is enabled, add a test run that uses it.
if (MFEM_USE_STRUMPACK)
add_test(NAME ex11p_strumpack_np=${MFEM_MPI_NP}
-18
View File
@@ -1,18 +0,0 @@
Finite Element Discretization Library
__
_ __ ___ / _| ___ _ __ ___
| '_ ` _ \ | |_ / _ \| '_ ` _ \
| | | | | || _|| __/| | | | | |
|_| |_| |_||_| \___||_| |_| |_|
https://mfem.org
This directory contains modifications of the example codes that illustrate the
use of MFEM features based on the Caliper performance profiling library.
To build these examples, make sure that MFEM is configured with the option
"MFEM_USE_CALIPER = YES", see the top-level INSTALL file for details (version
2.5.0 of Caliper is recommended, though older versions may work too).
We recommend comparing the original example codes with the corresponding files
in the current directory.
+2 -2
View File
@@ -206,9 +206,9 @@ int main(int argc, char *argv[])
cout << "Size of linear system: " << A->Height() << endl;
// 11. Solve the linear system A X = B.
MFEM_PERF_BEGIN("Solve A X=B");
if (!pa)
{
MFEM_PERF_SCOPE("Solve A X=B (FA)");
#ifndef MFEM_USE_SUITESPARSE
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
GSSmoother M((SparseMatrix&)(*A));
@@ -223,7 +223,6 @@ int main(int argc, char *argv[])
}
else // Jacobi preconditioning in partial assembly mode
{
MFEM_PERF_SCOPE("Solve A X=B (PA)");
if (UsesTensorBasis(fespace))
{
OperatorJacobiSmoother M(a, ess_tdof_list);
@@ -234,6 +233,7 @@ int main(int argc, char *argv[])
CG(*A, B, X, 1, 400, 1e-12, 0.0);
}
}
MFEM_PERF_END("Solve A X=B");
// 12. Recover the solution as a finite element grid function.
a.RecoverFEMSolution(X, b, x);
+18 -19
View File
@@ -231,29 +231,28 @@ int main(int argc, char *argv[])
// 13. Solve the linear system A X = B.
// * With full assembly, use the BoomerAMG preconditioner from hypre.
// * With partial assembly, use Jacobi smoothing, for now.
MFEM_PERF_BEGIN("Solve A X = B");
Solver *prec = NULL;
if (pa)
{
MFEM_PERF_SCOPE("Solve A X=B");
Solver *prec = NULL;
if (pa)
if (UsesTensorBasis(fespace))
{
if (UsesTensorBasis(fespace))
{
prec = new OperatorJacobiSmoother(a, ess_tdof_list);
}
prec = new OperatorJacobiSmoother(a, ess_tdof_list);
}
else
{
prec = new HypreBoomerAMG;
}
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(1);
if (prec) { cg.SetPreconditioner(*prec); }
cg.SetOperator(*A);
cg.Mult(B, X);
delete prec;
}
else
{
prec = new HypreBoomerAMG;
}
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(1);
if (prec) { cg.SetPreconditioner(*prec); }
cg.SetOperator(*A);
cg.Mult(B, X);
delete prec;
MFEM_PERF_END("Solve A X = B");
// 14. Recover the parallel grid function corresponding to X. This is the
// local finite element solution on each processor.
a.RecoverFEMSolution(X, b, x);
-1
View File
@@ -9,7 +9,6 @@
// ex1 -m ../data/fichera.mesh
// ex1 -m ../data/fichera-mixed.mesh
// ex1 -m ../data/toroid-wedge.mesh
// ex1 -m ../data/octahedron.mesh -o 1
// ex1 -m ../data/periodic-annulus-sector.msh
// ex1 -m ../data/periodic-torus-sector.msh
// ex1 -m ../data/square-disc-p2.vtk -o 2
+13 -20
View File
@@ -55,7 +55,6 @@ int main(int argc, char *argv[])
int order = 1;
int nev = 5;
bool visualization = 1;
const char *device_config = "cpu";
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
@@ -72,8 +71,6 @@ int main(int argc, char *argv[])
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.Parse();
if (!args.Good())
{
@@ -89,18 +86,13 @@ int main(int argc, char *argv[])
args.PrintOptions(cout);
}
// 3. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
if (myid == 0) { device.Print(); }
// 4. Read the (serial) mesh from the given mesh file on all processors. We
// 3. Read the (serial) mesh from the given mesh file on all processors. We
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
// and volume meshes with the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
// 5. Refine the serial mesh on all processors to increase the resolution. In
// 4. Refine the serial mesh on all processors to increase the resolution. In
// this example we do 'ref_levels' of uniform refinement (2 by default, or
// specified on the command line with -rs).
for (int lev = 0; lev < ser_ref_levels; lev++)
@@ -108,7 +100,7 @@ int main(int argc, char *argv[])
mesh->UniformRefinement();
}
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution (1 time by
// default, or specified on the command line with -rp). Once the parallel
// mesh is defined, the serial mesh can be deleted.
@@ -118,8 +110,9 @@ int main(int argc, char *argv[])
{
pmesh->UniformRefinement();
}
pmesh->ReorientTetMesh();
// 7. Define a parallel finite element space on the parallel mesh. Here we
// 6. Define a parallel finite element space on the parallel mesh. Here we
// use the Nedelec finite elements of the specified order.
FiniteElementCollection *fec = new ND_FECollection(order, dim);
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
@@ -129,7 +122,7 @@ int main(int argc, char *argv[])
cout << "Number of unknowns: " << size << endl;
}
// 8. Set up the parallel bilinear forms a(.,.) and m(.,.) on the finite
// 7. Set up the parallel bilinear forms a(.,.) and m(.,.) on the finite
// element space. The first corresponds to the curl curl, while the second
// is a simple mass matrix needed on the right hand side of the
// generalized eigenvalue problem below. The boundary conditions are
@@ -171,7 +164,7 @@ int main(int argc, char *argv[])
delete a;
delete m;
// 9. Define and configure the AME eigensolver and the AMS preconditioner for
// 8. Define and configure the AME eigensolver and the AMS preconditioner for
// A to be used within the solver. Set the matrices which define the
// generalized eigenproblem A x = lambda M x.
HypreAMS *ams = new HypreAMS(*A,fespace);
@@ -187,15 +180,15 @@ int main(int argc, char *argv[])
ame->SetMassMatrix(*M);
ame->SetOperator(*A);
// 10. Compute the eigenmodes and extract the array of eigenvalues. Define a
// parallel grid function to represent each of the eigenmodes returned by
// the solver.
// 9. Compute the eigenmodes and extract the array of eigenvalues. Define a
// parallel grid function to represent each of the eigenmodes returned by
// the solver.
Array<double> eigenvalues;
ame->Solve();
ame->GetEigenvalues(eigenvalues);
ParGridFunction x(fespace);
// 11. Save the refined mesh and the modes in parallel. This output can be
// 10. Save the refined mesh and the modes in parallel. This output can be
// viewed later using GLVis: "glvis -np <np> -m mesh -g mode".
{
ostringstream mesh_name, mode_name;
@@ -220,7 +213,7 @@ int main(int argc, char *argv[])
}
}
// 12. Send the solution by socket to a GLVis server.
// 11. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
@@ -260,7 +253,7 @@ int main(int argc, char *argv[])
mode_sock.close();
}
// 13. Free the used memory.
// 12. Free the used memory.
delete ame;
delete ams;
delete M;
+12 -45
View File
@@ -19,14 +19,6 @@
// ex15 -m ../data/square-disc.mesh
// ex15 -m ../data/escher.mesh -r 2 -tf 0.3
//
// Kelly estimator:
//
// ex15 -est 1 -e 0.0001
// ex15 -est 1 -o 1 -y 0.4
// ex15 -est 1 -o 4 -y 0.1
// ex15 -est 1 -n 5
// ex15 -est 1 -p 1 -n 3
//
// Description: Building on Example 6, this example demonstrates dynamic AMR.
// The mesh is adapted to a time-dependent solution by refinement
// as well as by derefinement. For simplicity, the solution is
@@ -36,10 +28,10 @@
// At each outer iteration the right hand side function is changed
// to mimic a time dependent problem. Within each inner iteration
// the problem is solved on a sequence of meshes which are locally
// refined according to a simple ZZ or Kelly error estimator. At
// the end of the inner iteration the error estimates are also
// used to identify any elements which may be over-refined and a
// single derefinement step is performed.
// refined according to a simple ZZ error estimator. At the end
// of the inner iteration the error estimates are also used to
// identify any elements which may be over-refined and a single
// derefinement step is performed.
//
// The example demonstrates MFEM's capability to refine and
// derefine nonconforming meshes, in 2D and 3D, and on linear,
@@ -86,7 +78,6 @@ int main(int argc, char *argv[])
int nc_limit = 3; // maximum level of hanging nodes
bool visualization = true;
bool visit = false;
int which_estimator = 0;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
@@ -107,9 +98,6 @@ int main(int argc, char *argv[])
"Maximum level of hanging nodes.");
args.AddOption(&t_final, "-tf", "--t-final",
"Final time; start time is 0.");
args.AddOption(&which_estimator, "-est", "--estimator",
"Which estimator to use: "
"0 = ZZ, 1 = Kelly. Defaults to ZZ.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
@@ -198,38 +186,19 @@ int main(int argc, char *argv[])
visit_dc.RegisterField("solution", &x);
int vis_cycle = 0;
// 9. As in Example 6, we set up an estimator that will be used to obtain
// element error indicators. The integrator needs to provide the method
// ComputeElementFlux. The smoothed flux space is a vector valued H1 (ZZ)
// or L2 (Kelly) space here.
L2_FECollection flux_fec(order, dim);
ErrorEstimator* estimator{nullptr};
switch (which_estimator)
{
case 1:
{
auto flux_fes = new FiniteElementSpace(&mesh, &flux_fec, sdim);
estimator = new KellyErrorEstimator(*integ, x, flux_fes);
break;
}
default:
std::cout << "Unknown estimator. Falling back to ZZ." << std::endl;
case 0:
{
auto flux_fes = new FiniteElementSpace(&mesh, &fec, sdim);
estimator = new ZienkiewiczZhuEstimator(*integ, x, flux_fes);
break;
}
}
// 9. As in Example 6, we set up a Zienkiewicz-Zhu estimator that will be
// used to obtain element error indicators. The integrator needs to
// provide the method ComputeElementFlux. The smoothed flux space is a
// vector valued H1 space here.
FiniteElementSpace flux_fespace(&mesh, &fec, sdim);
ZienkiewiczZhuEstimator estimator(*integ, x, flux_fespace);
// 10. As in Example 6, we also need a refiner. This time the refinement
// strategy is based on a fixed threshold that is applied locally to each
// element. The global threshold is turned off by setting the total error
// fraction to zero. We also enforce a maximum refinement ratio between
// adjacent elements.
ThresholdRefiner refiner(*estimator);
ThresholdRefiner refiner(estimator);
refiner.SetTotalErrorFraction(0.0); // use purely local threshold
refiner.SetLocalErrorGoal(max_elem_error);
refiner.PreferConformingRefinement();
@@ -238,7 +207,7 @@ int main(int argc, char *argv[])
// 11. A derefiner selects groups of elements that can be coarsened to form
// a larger element. A conservative enough threshold needs to be set to
// prevent derefining elements that would immediately be refined again.
ThresholdDerefiner derefiner(*estimator);
ThresholdDerefiner derefiner(estimator);
derefiner.SetThreshold(hysteresis * max_elem_error);
derefiner.SetNCLimit(nc_limit);
@@ -339,8 +308,6 @@ int main(int argc, char *argv[])
b.Update();
}
delete estimator;
return 0;
}
+6 -7
View File
@@ -223,14 +223,13 @@ int main(int argc, char *argv[])
visit_dc.RegisterField("solution", &x);
int vis_cycle = 0;
// 10. As in Example 6p, we set up an estimator that will be used to obtain
// element error indicators. The integrator needs to provide the method
// ComputeElementFlux. We supply an L2 space for the discontinuous flux
// and an H(div) space for the smoothed flux.
// 10. As in Example 6p, we set up a Zienkiewicz-Zhu estimator that will be
// used to obtain element error indicators. The integrator needs to
// provide the method ComputeElementFlux. We supply an L2 space for the
// discontinuous flux and an H(div) space for the smoothed flux.
L2_FECollection flux_fec(order, dim);
RT_FECollection smooth_flux_fec(order-1, dim);
ErrorEstimator* estimator{nullptr};
ErrorEstimator* estimator;
switch (which_estimator)
{
case 1:
@@ -249,7 +248,7 @@ int main(int argc, char *argv[])
default:
if (myid == 0)
{
std::cout << "Unknown estimator. Falling back to L2ZZ." << std::endl;
std::cout << "Unkown estimator. Falling back to L2ZZ." << std::endl;
}
case 0:
{
+4 -7
View File
@@ -24,10 +24,7 @@
// class ConductionOperator defining C(u)), as well as their
// implicit time integration. Note that implementing the method
// ConductionOperator::ImplicitSolve is the only requirement for
// high-order implicit (SDIRK) time integration. In this example,
// the diffusion operator is linearized by evaluating with the
// lagged solution from the previous timestep, so there is only
// a linear solve.
// high-order implicit (SDIRK) time integration.
//
// We recommend viewing examples 2, 9 and 10 before viewing this
// example.
@@ -329,8 +326,8 @@ ConductionOperator::ConductionOperator(FiniteElementSpace &f, double al,
void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
{
// Compute:
// du_dt = M^{-1}*-Ku
// for du_dt, where K is linearized by using u from the previous timestep
// du_dt = M^{-1}*-K(u)
// for du_dt
Kmat.Mult(u, z);
z.Neg(); // z = -z
M_solver.Mult(z, du_dt);
@@ -341,7 +338,7 @@ void ConductionOperator::ImplicitSolve(const double dt,
{
// Solve the equation:
// du_dt = M^{-1}*[-K(u + dt*du_dt)]
// for du_dt, where K is linearized by using u from the previous timestep
// for du_dt
if (!T)
{
T = Add(1.0, Mmat, dt, Kmat);
+5 -8
View File
@@ -24,11 +24,8 @@
// class ConductionOperator defining C(u)), as well as their
// implicit time integration. Note that implementing the method
// ConductionOperator::ImplicitSolve is the only requirement for
// high-order implicit (SDIRK) time integration. In this example,
// the diffusion operator is linearized by evaluating with the
// lagged solution from the previous timestep, so there is only
// a linear solve. Optional saving with ADIOS2
// (adios2.readthedocs.io) is also illustrated.
// high-order implicit (SDIRK) time integration. Optional saving
// with ADIOS2 (adios2.readthedocs.io) is also illustrated.
//
// We recommend viewing examples 2, 9 and 10 before viewing this
// example.
@@ -423,8 +420,8 @@ ConductionOperator::ConductionOperator(ParFiniteElementSpace &f, double al,
void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
{
// Compute:
// du_dt = M^{-1}*-Ku
// for du_dt, where K is linearized by using u from the previous timestep
// du_dt = M^{-1}*-K(u)
// for du_dt
Kmat.Mult(u, z);
z.Neg(); // z = -z
M_solver.Mult(z, du_dt);
@@ -435,7 +432,7 @@ void ConductionOperator::ImplicitSolve(const double dt,
{
// Solve the equation:
// du_dt = M^{-1}*[-K(u + dt*du_dt)]
// for du_dt, where K is linearized by using u from the previous timestep
// for du_dt
if (!T)
{
T = Add(1.0, Mmat, dt, Kmat);
+8 -24
View File
@@ -196,12 +196,6 @@ void InitialDeformation(const Vector &x, Vector &y);
int main(int argc, char *argv[])
{
#ifdef HYPRE_USING_CUDA
cout << "\nAs of mfem-4.3 and hypre-2.22.0 (July 2021) this example\n"
<< "is NOT supported with the CUDA version of hypre.\n\n";
return 255;
#endif
// 1. Initialize MPI
MPI_Session mpi;
const int myid = mpi.WorldRank();
@@ -444,19 +438,15 @@ JacobianPreconditioner::JacobianPreconditioner(Array<ParFiniteElementSpace *>
void JacobianPreconditioner::Mult(const Vector &k, Vector &y) const
{
// Extract the blocks from the input and output vectors
Vector disp_in;
disp_in.MakeRef(const_cast<Vector&>(k), block_trueOffsets[0],
block_trueOffsets[1]-block_trueOffsets[0]);
Vector pres_in;
pres_in.MakeRef(const_cast<Vector&>(k), block_trueOffsets[1],
block_trueOffsets[2]-block_trueOffsets[1]);
Vector disp_in(k.GetData() + block_trueOffsets[0],
block_trueOffsets[1]-block_trueOffsets[0]);
Vector pres_in(k.GetData() + block_trueOffsets[1],
block_trueOffsets[2]-block_trueOffsets[1]);
Vector disp_out;
disp_out.MakeRef(y, block_trueOffsets[0],
block_trueOffsets[1]-block_trueOffsets[0]);
Vector pres_out;
pres_out.MakeRef(y, block_trueOffsets[1],
block_trueOffsets[2]-block_trueOffsets[1]);
Vector disp_out(y.GetData() + block_trueOffsets[0],
block_trueOffsets[1]-block_trueOffsets[0]);
Vector pres_out(y.GetData() + block_trueOffsets[1],
block_trueOffsets[2]-block_trueOffsets[1]);
Vector temp(block_trueOffsets[1]-block_trueOffsets[0]);
Vector temp2(block_trueOffsets[1]-block_trueOffsets[0]);
@@ -469,9 +459,6 @@ void JacobianPreconditioner::Mult(const Vector &k, Vector &y) const
subtract(disp_in, temp, temp2);
stiff_pcg->Mult(temp2, disp_out);
disp_out.SyncAliasMemory(y);
pres_out.SyncAliasMemory(y);
}
void JacobianPreconditioner::SetOperator(const Operator &op)
@@ -486,10 +473,7 @@ void JacobianPreconditioner::SetOperator(const Operator &op)
if (!spaces[0]->GetParMesh()->Nonconforming())
{
#ifndef HYPRE_USING_CUDA
// Not available yet when hypre is built with CUDA
stiff_prec_amg->SetElasticityOptions(spaces[0]);
#endif
}
stiff_prec = stiff_prec_amg;
+6 -8
View File
@@ -9,7 +9,6 @@
// mpirun -np 4 ex1p -m ../data/fichera.mesh
// mpirun -np 4 ex1p -m ../data/fichera-mixed.mesh
// mpirun -np 4 ex1p -m ../data/toroid-wedge.mesh
// mpirun -np 4 ex1p -m ../data/octahedron.mesh -o 1
// mpirun -np 4 ex1p -m ../data/periodic-annulus-sector.msh
// mpirun -np 4 ex1p -m ../data/periodic-torus-sector.msh
// mpirun -np 4 ex1p -m ../data/square-disc-p2.vtk -o 2
@@ -90,8 +89,7 @@ int main(int argc, char *argv[])
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
#ifdef MFEM_USE_CEED
args.AddOption(&algebraic_ceed, "-a", "--algebraic",
"-no-a", "--no-algebraic",
args.AddOption(&algebraic_ceed, "-a", "--algebraic", "-no-a", "--no-algebraic",
"Use algebraic Ceed solver");
#endif
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
@@ -199,15 +197,15 @@ int main(int argc, char *argv[])
b.AddDomainIntegrator(new DomainLFIntegrator(one));
b.Assemble();
// 10. Define the solution vector x as a parallel finite element grid
// function corresponding to fespace. Initialize x with initial guess of
// zero, which satisfies the boundary conditions.
// 10. Define the solution vector x as a parallel finite element grid function
// corresponding to fespace. Initialize x with initial guess of zero,
// which satisfies the boundary conditions.
ParGridFunction x(&fespace);
x = 0.0;
// 11. Set up the parallel bilinear form a(.,.) on the finite element space
// corresponding to the Laplacian operator -Delta, by adding the
// Diffusion domain integrator.
// corresponding to the Laplacian operator -Delta, by adding the Diffusion
// domain integrator.
ParBilinearForm a(&fespace);
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
a.AddDomainIntegrator(new DiffusionIntegrator(one));
-5
View File
@@ -3,10 +3,6 @@
// Compile with: make ex20
//
// Sample runs: ex20
// ex20 -p 1 -o 1 -n 120 -dt 0.1
// ex20 -p 1 -o 2 -n 60 -dt 0.2
// ex20 -p 1 -o 3 -n 40 -dt 0.3
// ex20 -p 1 -o 4 -n 30 -dt 0.4
//
// Description: This example demonstrates the use of the variable order,
// symplectic ODE integration algorithm. Symplectic integration
@@ -235,7 +231,6 @@ int main(int argc, char *argv[])
// 9. Finalize the GLVis output
if (visualization)
{
mesh.FinalizeQuadMesh(1);
H1_FECollection fec(order = 1, 2);
FiniteElementSpace fespace(&mesh, &fec);
GridFunction energy(&fespace);
+7 -11
View File
@@ -3,10 +3,6 @@
// Compile with: make ex20p
//
// Sample runs: mpirun -np 4 ex20p
// mpirun -np 4 ex20p -p 1 -o 1 -n 120 -dt 0.1
// mpirun -np 4 ex20p -p 1 -o 2 -n 60 -dt 0.2
// mpirun -np 4 ex20p -p 1 -o 3 -n 40 -dt 0.3
// mpirun -np 4 ex20p -p 1 -o 4 -n 30 -dt 0.4
//
// Description: This example demonstrates the use of the variable order,
// symplectic ODE integration algorithm. Symplectic integration
@@ -172,7 +168,7 @@ int main(int argc, char *argv[])
}
// 6. Create a Mesh for visualization in phase space
int nverts = (visualization) ? 2*num_procs*(nsteps+1) : 0;
int nverts = (visualization) ? (num_procs+1)*(nsteps+1) : 0;
int nelems = (visualization) ? (nsteps * num_procs) : 0;
Mesh mesh(2, nverts, nelems, 0, 3);
@@ -194,9 +190,9 @@ int main(int argc, char *argv[])
if (visualization)
{
mesh.AddVertex(x0);
for (int j = 0; j < num_procs; j++)
{
mesh.AddVertex(x0);
x1[0] = q(0);
x1[1] = p(0);
x1[2] = 0.0;
@@ -220,17 +216,17 @@ int main(int argc, char *argv[])
if (visualization)
{
x0[2] = t;
mesh.AddVertex(x0);
for (int j = 0; j < num_procs; j++)
{
mesh.AddVertex(x0);
x1[0] = q(0);
x1[1] = p(0);
x1[2] = t;
mesh.AddVertex(x1);
v[0] = 2 * num_procs * i + 2 * j;
v[1] = 2 * num_procs * (i + 1) + 2 * j;
v[2] = 2 * num_procs * (i + 1) + 2 * j + 1;
v[3] = 2 * num_procs * i + 2 * j + 1;
v[0] = (num_procs + 1) * i;
v[1] = (num_procs + 1) * (i + 1);
v[2] = (num_procs + 1) * (i + 1) + j + 1;
v[3] = (num_procs + 1) * i + j + 1;
mesh.AddQuad(v);
part[num_procs * i + j] = j;
}
-2
View File
@@ -13,8 +13,6 @@
// ex22 -m ../data/inline-hex.mesh -o 2 -p 1
// ex22 -m ../data/inline-hex.mesh -o 2 -p 2
// ex22 -m ../data/inline-hex.mesh -o 2 -p 2 -pa
// ex22 -m ../data/inline-wedge.mesh -o 1
// ex22 -m ../data/inline-pyramid.mesh -o 1
// ex22 -m ../data/star.mesh -r 1 -o 2 -sigma 10.0
//
// Device sample runs:
-2
View File
@@ -13,8 +13,6 @@
// mpirun -np 4 ex22p -m ../data/inline-hex.mesh -o 2 -p 1
// mpirun -np 4 ex22p -m ../data/inline-hex.mesh -o 2 -p 2
// mpirun -np 4 ex22p -m ../data/inline-hex.mesh -o 1 -p 2 -pa
// mpirun -np 4 ex22p -m ../data/inline-wedge.mesh -o 1
// mpirun -np 4 ex22p -m ../data/inline-pyramid.mesh -o 1
// mpirun -np 4 ex22p -m ../data/star.mesh -o 2 -sigma 10.0
//
// Device sample runs:
+1
View File
@@ -113,6 +113,7 @@ int main(int argc, char *argv[])
mesh->UniformRefinement();
}
}
mesh->ReorientTetMesh();
// 5. Define a finite element space on the mesh. Here we use Nedelec or
// Raviart-Thomas finite elements of the specified order.
+1
View File
@@ -141,6 +141,7 @@ int main(int argc, char *argv[])
pmesh->UniformRefinement();
}
}
pmesh->ReorientTetMesh();
// 7. Define a parallel finite element space on the parallel mesh. Here we
// use Nedelec or Raviart-Thomas finite elements of the specified order.
+5 -3
View File
@@ -92,7 +92,7 @@ class PMLDiagMatrixCoefficient : public VectorCoefficient
{
private:
CartesianPML * pml = nullptr;
void (*Function)(const Vector &, CartesianPML *, Vector &);
void (*Function)(const Vector &, CartesianPML * , Vector &);
public:
PMLDiagMatrixCoefficient(int dim, void(*F)(const Vector &, CartesianPML *,
Vector &),
@@ -277,8 +277,10 @@ int main(int argc, char *argv[])
mesh->UniformRefinement();
}
// 6. Set element attributes in order to distinguish elements in the
// PML region
// 6. Reorient mesh in case of a tet mesh
mesh->ReorientTetMesh();
// Set element attributes in order to distinguish elements in the PML region
pml->SetAttributes(mesh);
// 7. Define a finite element space on the mesh. Here we use the Nedelec
+4 -1
View File
@@ -92,7 +92,7 @@ class PMLDiagMatrixCoefficient : public VectorCoefficient
{
private:
CartesianPML * pml = nullptr;
void (*Function)(const Vector &, CartesianPML *, Vector &);
void (*Function)(const Vector &, CartesianPML * , Vector &);
public:
PMLDiagMatrixCoefficient(int dim, void(*F)(const Vector &, CartesianPML *,
Vector &),
@@ -316,6 +316,9 @@ int main(int argc, char *argv[])
}
}
// 7a. Reorient mesh in case of a tet mesh
pmesh->ReorientTetMesh();
// 8. Set element attributes in order to distinguish elements in the PML
pml->SetAttributes(pmesh);
+1 -1
View File
@@ -105,7 +105,7 @@ private:
Vector diag(fespace.GetTrueVSize());
bfs.Last()->AssembleDiagonal(diag);
Solver* smoother = new OperatorChebyshevSmoother(*opr, diag,
Solver* smoother = new OperatorChebyshevSmoother(opr.Ptr(), diag,
*essentialTrueDofs.Last(), 2);
AddLevel(opr.Ptr(), smoother, true, true);
}
+1 -1
View File
@@ -115,7 +115,7 @@ private:
Vector diag(fespace.GetTrueVSize());
bfs.Last()->AssembleDiagonal(diag);
Solver* smoother = new OperatorChebyshevSmoother(*opr, diag,
Solver* smoother = new OperatorChebyshevSmoother(opr.Ptr(), diag,
*essentialTrueDofs.Last(), 2, fespace.GetParMesh()->GetComm());
AddLevel(opr.Ptr(), smoother, true, true);
-7
View File
@@ -81,12 +81,6 @@ Mesh * build_trapezoid_mesh(double offset)
int main(int argc, char *argv[])
{
#ifdef HYPRE_USING_CUDA
cout << "\nAs of mfem-4.3 and hypre-2.22.0 (July 2021) this example\n"
<< "is NOT supported with the CUDA version of hypre.\n\n";
return 255;
#endif
// 1. Initialize MPI.
int num_procs, myid;
MPI_Init(&argc, &argv);
@@ -366,7 +360,6 @@ int main(int argc, char *argv[])
}
delete pmesh;
// HYPRE_Finalize();
MPI_Finalize();
return 0;
+23 -31
View File
@@ -61,7 +61,6 @@ int main(int argc, char *argv[])
bool visualization = 1;
bool amg_elast = 0;
bool reorder_space = false;
const char *device_config = "cpu";
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
@@ -79,8 +78,6 @@ int main(int argc, char *argv[])
"Enable or disable GLVis visualization.");
args.AddOption(&reorder_space, "-nodes", "--by-nodes", "-vdim", "--by-vdim",
"Use byNODES ordering of vector space instead of byVDIM");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.Parse();
if (!args.Good())
{
@@ -96,12 +93,7 @@ int main(int argc, char *argv[])
args.PrintOptions(cout);
}
// 3. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
if (myid == 0) { device.Print(); }
// 4. Read the (serial) mesh from the given mesh file on all processors. We
// 3. Read the (serial) mesh from the given mesh file on all processors. We
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
// and volume meshes with the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
@@ -117,14 +109,14 @@ int main(int argc, char *argv[])
return 3;
}
// 5. Select the order of the finite element discretization space. For NURBS
// 4. Select the order of the finite element discretization space. For NURBS
// meshes, we increase the order by degree elevation.
if (mesh->NURBSext)
{
mesh->DegreeElevate(order, order);
}
// 6. Refine the serial mesh on all processors to increase the resolution. In
// 5. Refine the serial mesh on all processors to increase the resolution. In
// this example we do 'ref_levels' of uniform refinement. We choose
// 'ref_levels' to be the largest number that gives a final mesh with no
// more than 1,000 elements.
@@ -137,7 +129,7 @@ int main(int argc, char *argv[])
}
}
// 7. Define a parallel mesh by a partitioning of the serial mesh. Refine
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted.
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
@@ -150,7 +142,7 @@ int main(int argc, char *argv[])
}
}
// 8. Define a parallel finite element space on the parallel mesh. Here we
// 7. Define a parallel finite element space on the parallel mesh. Here we
// use vector finite elements, i.e. dim copies of a scalar finite element
// space. We use the ordering by vector dimension (the last argument of
// the FiniteElementSpace constructor) which is expected in the systems
@@ -183,7 +175,7 @@ int main(int argc, char *argv[])
<< "Assembling: " << flush;
}
// 9. Determine the list of true (i.e. parallel conforming) essential
// 8. Determine the list of true (i.e. parallel conforming) essential
// boundary dofs. In this example, the boundary conditions are defined by
// marking only boundary attribute 1 from the mesh as essential and
// converting it to a list of true dofs.
@@ -192,14 +184,14 @@ int main(int argc, char *argv[])
ess_bdr[0] = 1;
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
// 10. Set up the parallel linear form b(.) which corresponds to the
// right-hand side of the FEM linear system. In this case, b_i equals the
// boundary integral of f*phi_i where f represents a "pull down" force on
// the Neumann part of the boundary and phi_i are the basis functions in
// the finite element fespace. The force is defined by the object f, which
// is a vector of Coefficient objects. The fact that f is non-zero on
// boundary attribute 2 is indicated by the use of piece-wise constants
// coefficient for its last component.
// 9. Set up the parallel linear form b(.) which corresponds to the
// right-hand side of the FEM linear system. In this case, b_i equals the
// boundary integral of f*phi_i where f represents a "pull down" force on
// the Neumann part of the boundary and phi_i are the basis functions in
// the finite element fespace. The force is defined by the object f, which
// is a vector of Coefficient objects. The fact that f is non-zero on
// boundary attribute 2 is indicated by the use of piece-wise constants
// coefficient for its last component.
VectorArrayCoefficient f(dim);
for (int i = 0; i < dim-1; i++)
{
@@ -220,13 +212,13 @@ int main(int argc, char *argv[])
}
b->Assemble();
// 11. Define the solution vector x as a parallel finite element grid
// 10. Define the solution vector x as a parallel finite element grid
// function corresponding to fespace. Initialize x with initial guess of
// zero, which satisfies the boundary conditions.
ParGridFunction x(fespace);
x = 0.0;
// 12. Set up the parallel bilinear form a(.,.) on the finite element space
// 11. Set up the parallel bilinear form a(.,.) on the finite element space
// corresponding to the linear elasticity integrator with piece-wise
// constants coefficient lambda and mu.
Vector lambda(pmesh->attributes.Max());
@@ -241,7 +233,7 @@ int main(int argc, char *argv[])
ParBilinearForm *a = new ParBilinearForm(fespace);
a->AddDomainIntegrator(new ElasticityIntegrator(lambda_func, mu_func));
// 13. Assemble the parallel bilinear form and the corresponding linear
// 12. Assemble the parallel bilinear form and the corresponding linear
// system, applying any necessary transformations such as: parallel
// assembly, eliminating boundary conditions, applying conforming
// constraints for non-conforming AMR, static condensation, etc.
@@ -258,7 +250,7 @@ int main(int argc, char *argv[])
cout << "Size of linear system: " << A.GetGlobalNumRows() << endl;
}
// 14. Define and apply a parallel PCG solver for A X = B with the BoomerAMG
// 13. Define and apply a parallel PCG solver for A X = B with the BoomerAMG
// preconditioner from hypre.
HypreBoomerAMG *amg = new HypreBoomerAMG(A);
if (amg_elast && !a->StaticCondensationIsEnabled())
@@ -276,11 +268,11 @@ int main(int argc, char *argv[])
pcg->SetPreconditioner(*amg);
pcg->Mult(B, X);
// 15. Recover the parallel grid function corresponding to X. This is the
// 14. Recover the parallel grid function corresponding to X. This is the
// local finite element solution on each processor.
a->RecoverFEMSolution(X, *b, x);
// 16. For non-NURBS meshes, make the mesh curved based on the finite element
// 15. For non-NURBS meshes, make the mesh curved based on the finite element
// space. This means that we define the mesh elements through a fespace
// based transformation of the reference element. This allows us to save
// the displaced mesh as a curved mesh when using high-order finite
@@ -292,7 +284,7 @@ int main(int argc, char *argv[])
pmesh->SetNodalFESpace(fespace);
}
// 17. Save in parallel the displaced mesh and the inverted solution (which
// 16. Save in parallel the displaced mesh and the inverted solution (which
// gives the backward displacements to the original grid). This output
// can be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
{
@@ -313,7 +305,7 @@ int main(int argc, char *argv[])
x.Save(sol_ofs);
}
// 18. Send the above data by socket to a GLVis server. Use the "n" and "b"
// 17. Send the above data by socket to a GLVis server. Use the "n" and "b"
// keys in GLVis to visualize the displacements.
if (visualization)
{
@@ -325,7 +317,7 @@ int main(int argc, char *argv[])
sol_sock << "solution\n" << *pmesh << x << flush;
}
// 19. Free the used memory.
// 18. Free the used memory.
delete pcg;
delete amg;
delete a;
+1 -2
View File
@@ -16,8 +16,6 @@
// ex3 -m ../data/beam-hex-nurbs.mesh
// ex3 -m ../data/amr-hex.mesh
// ex3 -m ../data/fichera-amr.mesh
// ex3 -m ../data/ref-prism.mesh -o 1
// ex3 -m ../data/octahedron.mesh -o 1
// ex3 -m ../data/star-surf.mesh -o 1
// ex3 -m ../data/mobius-strip.mesh -f 0.1
// ex3 -m ../data/klein-bottle.mesh -f 0.1
@@ -115,6 +113,7 @@ int main(int argc, char *argv[])
mesh->UniformRefinement();
}
}
mesh->ReorientTetMesh();
// 5. Define a finite element space on the mesh. Here we use the Nedelec
// finite elements of the specified order.
+4 -4
View File
@@ -16,8 +16,6 @@
// mpirun -np 4 ex3p -m ../data/beam-hex-nurbs.mesh
// mpirun -np 4 ex3p -m ../data/amr-quad.mesh -o 2
// mpirun -np 4 ex3p -m ../data/amr-hex.mesh
// mpirun -np 4 ex3p -m ../data/ref-prism.mesh -o 1
// mpirun -np 4 ex3p -m ../data/octahedron.mesh -o 1
// mpirun -np 4 ex3p -m ../data/star-surf.mesh -o 2
// mpirun -np 4 ex3p -m ../data/mobius-strip.mesh -o 2 -f 0.1
// mpirun -np 4 ex3p -m ../data/klein-bottle.mesh -o 2 -f 0.1
@@ -105,7 +103,6 @@ int main(int argc, char *argv[])
{
args.PrintUsage(cout);
}
// HYPRE_Finalize();
MPI_Finalize();
return 1;
}
@@ -141,7 +138,9 @@ int main(int argc, char *argv[])
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted.
// parallel mesh is defined, the serial mesh can be deleted. Tetrahedral
// meshes need to be reoriented before we can define high-order Nedelec
// spaces on them.
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
delete mesh;
{
@@ -151,6 +150,7 @@ int main(int argc, char *argv[])
pmesh->UniformRefinement();
}
}
pmesh->ReorientTetMesh();
// 7. Define a parallel finite element space on the parallel mesh. Here we
// use the Nedelec finite elements of the specified order.
-2
View File
@@ -19,8 +19,6 @@
// ex4 -m ../data/amr-hex.mesh
// ex4 -m ../data/amr-hex.mesh -o 2 -hb
// ex4 -m ../data/fichera-amr.mesh -o 2 -sc
// ex4 -m ../data/ref-prism.mesh -o 1
// ex4 -m ../data/octahedron.mesh -o 1
// ex4 -m ../data/star-surf.mesh -o 1
//
// Device sample runs:
+4 -3
View File
@@ -19,8 +19,6 @@
// mpirun -np 3 ex4p -m ../data/amr-quad.mesh -o 2 -hb
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -hb
// mpirun -np 4 ex4p -m ../data/ref-prism.mesh -o 1
// mpirun -np 4 ex4p -m ../data/octahedron.mesh -o 1
// mpirun -np 4 ex4p -m ../data/star-surf.mesh -o 3 -hb
//
// Device sample runs:
@@ -137,7 +135,9 @@ int main(int argc, char *argv[])
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted.
// parallel mesh is defined, the serial mesh can be deleted. Tetrahedral
// meshes need to be reoriented before we can define high-order Nedelec
// spaces on them (this is needed in the ADS solver below).
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
delete mesh;
{
@@ -147,6 +147,7 @@ int main(int argc, char *argv[])
pmesh->UniformRefinement();
}
}
pmesh->ReorientTetMesh();
// 7. Define a parallel finite element space on the parallel mesh. Here we
// use the Raviart-Thomas finite elements of the specified order.
+3 -11
View File
@@ -197,7 +197,6 @@ int main(int argc, char *argv[])
SparseMatrix &M(mVarf->SpMat());
SparseMatrix &B(bVarf->SpMat());
B *= -1.;
if (Device::IsEnabled()) { B.BuildTranspose(); }
Bt = new TransposeOperator(&B);
darcyOp.SetBlock(0,0, &M);
@@ -241,7 +240,6 @@ int main(int argc, char *argv[])
{
SparseMatrix &M(mVarf->SpMat());
M.GetDiag(Md);
Md.HostReadWrite();
SparseMatrix &B(bVarf->SpMat());
MinvBt = Transpose(B);
@@ -289,18 +287,12 @@ int main(int argc, char *argv[])
chrono.Stop();
if (solver.GetConverged())
{
std::cout << "MINRES converged in " << solver.GetNumIterations()
<< " iterations with a residual norm of "
<< solver.GetFinalNorm() << ".\n";
}
<< " iterations with a residual norm of " << solver.GetFinalNorm() << ".\n";
else
{
std::cout << "MINRES did not converge in " << solver.GetNumIterations()
<< " iterations. Residual norm is " << solver.GetFinalNorm()
<< ".\n";
}
std::cout << "MINRES solver took " << chrono.RealTime() << "s.\n";
<< " iterations. Residual norm is " << solver.GetFinalNorm() << ".\n";
std::cout << "MINRES solver took " << chrono.RealTime() << "s. \n";
// 12. Create the grid functions u and p. Compute the L2 error norms.
GridFunction u, p;
+13 -21
View File
@@ -47,7 +47,6 @@ int main(int argc, char *argv[])
int order = 2;
bool always_snap = false;
bool visualization = 1;
const char *device_config = "cpu";
OptionsParser args(argc, argv);
args.AddOption(&elem_type, "-e", "--elem",
@@ -66,8 +65,6 @@ int main(int argc, char *argv[])
"--snap-at-the-end",
"If true, snap nodes to the sphere initially and after each refinement "
"otherwise, snap only after the last refinement");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.Parse();
if (!args.Good())
{
@@ -83,12 +80,7 @@ int main(int argc, char *argv[])
args.PrintOptions(cout);
}
// 3. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
if (myid == 0) { device.Print(); }
// 4. Generate an initial high-order (surface) mesh on the unit sphere. The
// 3. Generate an initial high-order (surface) mesh on the unit sphere. The
// Mesh object represents a 2D mesh in 3 spatial dimensions. We first add
// the elements and the vertices of the mesh, and then make it high-order
// by specifying a finite element space for its nodes.
@@ -154,7 +146,7 @@ int main(int argc, char *argv[])
FiniteElementSpace nodal_fes(mesh, &fec, mesh->SpaceDimension());
mesh->SetNodalFESpace(&nodal_fes);
// 5. Refine the mesh while snapping nodes to the sphere. Number of parallel
// 4. Refine the mesh while snapping nodes to the sphere. Number of parallel
// refinements is fixed to 2.
for (int l = 0; l <= ref_levels; l++)
{
@@ -226,7 +218,7 @@ int main(int argc, char *argv[])
SnapNodes(*pmesh);
}
// 6. Define a finite element space on the mesh. Here we use isoparametric
// 5. Define a finite element space on the mesh. Here we use isoparametric
// finite elements -- the same as the mesh nodes.
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, &fec);
HYPRE_BigInt size = fespace->GlobalTrueVSize();
@@ -235,7 +227,7 @@ int main(int argc, char *argv[])
cout << "Number of unknowns: " << size << endl;
}
// 7. Set up the linear form b(.) which corresponds to the right-hand side of
// 6. Set up the linear form b(.) which corresponds to the right-hand side of
// the FEM linear system, which in this case is (1,phi_i) where phi_i are
// the basis functions in the finite element fespace.
ParLinearForm *b = new ParLinearForm(fespace);
@@ -245,27 +237,27 @@ int main(int argc, char *argv[])
b->AddDomainIntegrator(new DomainLFIntegrator(rhs_coef));
b->Assemble();
// 8. Define the solution vector x as a finite element grid function
// 7. Define the solution vector x as a finite element grid function
// corresponding to fespace. Initialize x with initial guess of zero.
ParGridFunction x(fespace);
x = 0.0;
// 9. Set up the bilinear form a(.,.) on the finite element space
// 8. Set up the bilinear form a(.,.) on the finite element space
// corresponding to the Laplacian operator -Delta, by adding the Diffusion
// and Mass domain integrators.
ParBilinearForm *a = new ParBilinearForm(fespace);
a->AddDomainIntegrator(new DiffusionIntegrator(one));
a->AddDomainIntegrator(new MassIntegrator(one));
// 10. Assemble the parallel linear system, applying any transformations
// such as: parallel assembly, applying conforming constraints, etc.
// 9. Assemble the parallel linear system, applying any transformations
// such as: parallel assembly, applying conforming constraints, etc.
a->Assemble();
HypreParMatrix A;
Vector B, X;
Array<int> empty_tdof_list;
a->FormLinearSystem(empty_tdof_list, x, *b, A, X, B);
// 11. Define and apply a parallel PCG solver for AX=B with the BoomerAMG
// 10. Define and apply a parallel PCG solver for AX=B with the BoomerAMG
// preconditioner from hypre. Extract the parallel grid function x
// corresponding to the finite element approximation X. This is the local
// solution on each processor.
@@ -281,14 +273,14 @@ int main(int argc, char *argv[])
delete a;
delete b;
// 12. Compute and print the L^2 norm of the error.
// 11. Compute and print the L^2 norm of the error.
double err = x.ComputeL2Error(sol_coef);
if (myid == 0)
{
cout << "\nL2 norm of error: " << err << endl;
}
// 13. Save the refined mesh and the solution. This output can be viewed
// 12. Save the refined mesh and the solution. This output can be viewed
// later using GLVis: "glvis -np <np> -m sphere_refined -g sol".
{
ostringstream mesh_name, sol_name;
@@ -304,7 +296,7 @@ int main(int argc, char *argv[])
x.Save(sol_ofs);
}
// 14. Send the solution by socket to a GLVis server.
// 13. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
@@ -315,7 +307,7 @@ int main(int argc, char *argv[])
sol_sock << "solution\n" << *pmesh << x << flush;
}
// 15. Free the used memory.
// 14. Free the used memory.
delete pcg;
delete amg;
delete fespace;
+1
View File
@@ -106,6 +106,7 @@ int main(int argc, char *argv[])
pmesh->UniformRefinement();
}
}
pmesh->ReorientTetMesh();
// 6. Define the trial, interfacial (trace) and test DPG spaces:
// - The trial space, x0_space, contains the non-interfacial unknowns and
+34 -124
View File
@@ -69,8 +69,7 @@ int main(int argc, char *argv[])
bool pa = false;
const char *device_config = "cpu";
bool visualization = true;
int solver_config = 0;
int print_lvl = 1;
bool use_ginkgo_solver= true;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
@@ -87,14 +86,9 @@ int main(int argc, char *argv[])
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&solver_config, "-s", "--solver-config",
"Solver and preconditioner combination: \n\t"
" 0 - Ginkgo solver and Ginkgo preconditioner, \n\t"
" 1 - Ginkgo solver and MFEM preconditioner, \n\t"
" 2 - MFEM solver and Ginkgo preconditioner, \n\t"
" 3 - MFEM solver and MFEM preconditioner.");
args.AddOption(&print_lvl, "-pl", "--print-level",
"Print level for iterative solver (1 prints every iteration).");
args.AddOption(&use_ginkgo_solver, "-gko", "--use_gko_solver", "-no-gko",
"--no-gko-solver",
"Solve using ginkgo.");
args.Parse();
if (!args.Good())
{
@@ -197,123 +191,39 @@ int main(int argc, char *argv[])
// 11. Solve the linear system A X = B.
if (!pa)
{
switch (solver_config)
if (use_ginkgo_solver)
{
// Solve the linear system with CG + IC from Ginkgo
case 0:
{
cout << "Using Ginkgo solver + preconditioner...\n";
Ginkgo::GinkgoExecutor exec(device);
Ginkgo::IcPreconditioner ginkgo_precond(exec, "paric", 30);
Ginkgo::CGSolver ginkgo_solver(exec, ginkgo_precond);
ginkgo_solver.SetPrintLevel(print_lvl);
ginkgo_solver.SetRelTol(1e-12);
ginkgo_solver.SetAbsTol(0.0);
ginkgo_solver.SetMaxIter(400);
ginkgo_solver.SetOperator(*(A.Ptr()));
ginkgo_solver.Mult(B, X);
break;
}
// Solve the linear system with CG from Ginkgo + MFEM preconditioner
case 1:
{
cout << "Using Ginkgo solver + MFEM preconditioner...\n";
Ginkgo::GinkgoExecutor exec(device);
//Create MFEM preconditioner and wrap it for Ginkgo's use.
DSmoother M((SparseMatrix&)(*A));
Ginkgo::MFEMPreconditioner gko_M(exec, M);
Ginkgo::CGSolver ginkgo_solver(exec, gko_M);
ginkgo_solver.SetPrintLevel(print_lvl);
ginkgo_solver.SetRelTol(1e-12);
ginkgo_solver.SetAbsTol(0.0);
ginkgo_solver.SetMaxIter(400);
ginkgo_solver.SetOperator(*(A.Ptr()));
ginkgo_solver.Mult(B, X);
break;
}
// Ginkgo IC preconditioner + MFEM CG solver
case 2:
{
cout << "Using MFEM solver + Ginkgo preconditioner...\n";
Ginkgo::GinkgoExecutor exec(device);
Ginkgo::IcPreconditioner M(exec, "paric", 30);
M.SetOperator(*(A.Ptr())); // Generate the preconditioner for the matrix A.
PCG(*A, M, B, X, print_lvl, 400, 1e-12, 0.0);
break;
}
// MFEM solver + MFEM preconditioner
case 3:
{
cout << "Using MFEM solver + MFEM preconditioner...\n";
// Use a simple Jacobi preconditioner with PCG.
DSmoother M((SparseMatrix&)(*A));
PCG(*A, M, B, X, print_lvl, 400, 1e-12, 0.0);
break;
}
} // End switch on solver_config
#ifdef MFEM_USE_GINKGO
// Solve the linear system with CG + ILU from Ginkgo.
std::string executor = "reference";
auto exec = gko::ReferenceExecutor::create();
auto ilu_precond =
gko::preconditioner::Ilu<gko::solver::LowerTrs<>,
gko::solver::UpperTrs<>, false>::build()
.on(exec);
GinkgoWrappers::CGSolver ginkgo_solver(executor, 1, 2000, 1e-12, 0.0,
ilu_precond.release() );
ginkgo_solver.solve(&((SparseMatrix&)(*A)), X, B);
#endif
}
else
{
#ifndef MFEM_USE_SUITESPARSE
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
GSSmoother M((SparseMatrix&)(*A));
PCG(*A, M, B, X, 1, 200, 1e-12, 0.0);
#else
// If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
UMFPackSolver umf_solver;
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
umf_solver.SetOperator(*A);
umf_solver.Mult(B, X);
#endif
}
}
// Partial assembly mode. Cannot use Ginkgo preconditioners, but can use Ginkgo
// solvers.
else
else // No preconditioning for now in partial assembly mode.
{
if (UsesTensorBasis(*fespace))
{
// Use Jacobi preconditioning in partial assembly mode.
OperatorJacobiSmoother M(*a, ess_tdof_list);
switch (solver_config)
{
// No Ginkgo preconditioners work with matrix-free; error
case 0:
{
cout << "Using Ginkgo solver + preconditioner...\n";
MFEM_ABORT("Cannot use Ginkgo preconditioner in partial assembly mode.\n"
" Try -s 1 to test Ginkgo solver with an MFEM preconditioner.");
break;
}
// Use Ginkgo solver with MFEM preconditioner
case 1:
{
cout << "Using Ginkgo solver + MFEM preconditioner...\n";
Ginkgo::GinkgoExecutor exec(device);
// Wrap MFEM preconditioner for Ginkgo's use.
Ginkgo::MFEMPreconditioner gko_M(exec, M);
Ginkgo::CGSolver ginkgo_solver(exec, gko_M);
ginkgo_solver.SetPrintLevel(print_lvl);
ginkgo_solver.SetRelTol(1e-12);
ginkgo_solver.SetAbsTol(0.0);
ginkgo_solver.SetMaxIter(400);
ginkgo_solver.SetOperator(*(A.Ptr()));
ginkgo_solver.Mult(B, X);
break;
}
// No Ginkgo preconditioners work with matrix-free; error
case 2:
{
cout << "Using MFEM solver + Ginkgo preconditioner...\n";
MFEM_ABORT("Cannot use Ginkgo preconditioner in partial assembly mode.\n"
" Try -s 1 to test Ginkgo solver with an MFEM preconditioner.");
break;
}
// Use MFEM solver and preconditioner
case 3:
{
cout << "Using MFEM solver + MFEM preconditioner...\n";
PCG(*A, M, B, X, print_lvl, 400, 1e-12, 0.0);
break;
}
} // End switch on solver_config
}
else // CG with no preconditioning
{
cout << "Using MFEM solver + no preconditioner...\n";
CG(*A, B, X, print_lvl, 400, 1e-12, 0.0);
}
CG(*A, B, X, 1, 2000, 1e-12, 0.0);
}
// 12. Recover the solution as a finite element grid function.
+1 -1
View File
@@ -216,7 +216,7 @@ int main(int argc, char *argv[])
{
// 1. Parse command-line options.
problem = 0;
optimizer_type = 2;
optimizer_type = 1;
const char *mesh_file = "../../data/periodic-hexagon.mesh";
int ref_levels = 2;
int order = 3;
+1 -1
View File
@@ -247,7 +247,7 @@ int main(int argc, char *argv[])
// 2. Parse command-line options.
problem = 0;
optimizer_type = 2;
optimizer_type = 1;
const char *mesh_file = "../../data/periodic-hexagon.mesh";
int ser_ref_levels = 2;
int par_ref_levels = 0;
-7
View File
@@ -50,13 +50,6 @@ endif
MFEM_TESTS = EXAMPLES
include $(MFEM_TEST_MK)
# Testing: Parallel vs. serial runs
RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
%-test-par: %
@$(call mfem-test,$<, $(RUN_MPI), Parallel example)
%-test-seq: %
@$(call mfem-test,$<,, Serial example)
# Testing: "test" target and mfem-test* variables are defined in config/test.mk
# Generate an error message if the MFEM library is not built and exit
-11
View File
@@ -26,9 +26,6 @@ SEQ_EXAMPLES = ex0 ex1 ex2 ex3 ex4 ex5 ex6 ex7 ex8 ex9 ex10 ex14 ex15 ex16 \
PAR_EXAMPLES = ex0p ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex8p ex9p ex10p ex11p \
ex12p ex13p ex14p ex15p ex16p ex17p ex18p ex19p ex20p ex21p ex22p ex24p \
ex25p ex26p ex27p ex28p ex29p
SEQ_DEVICE_EXAMPLES = ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26
PAR_DEVICE_EXAMPLES = ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p \
ex24p ex25p ex26p
ifeq ($(MFEM_USE_MPI),NO)
EXAMPLES = $(SEQ_EXAMPLES)
@@ -102,14 +99,6 @@ RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
@$(call mfem-test,$<, $(RUN_MPI), Parallel example)
%-test-seq: %
@$(call mfem-test,$<,, Serial example)
%-test-par-cuda: %
@$(call mfem-test,$<, $(RUN_MPI), Parallel CUDA example,-d cuda)
%-test-seq-cuda: %
@$(call mfem-test,$<,, Serial CUDA example,-d cuda)
%-test-par-hip: %
@$(call mfem-test,$<, $(RUN_MPI), Parallel HIP example,-d hip)
%-test-seq-hip: %
@$(call mfem-test,$<,, Serial HIP example,-d hip)
# Testing: Specific execution options
ex0-test-seq: ex0
+4 -1
View File
@@ -121,7 +121,9 @@ int main(int argc, char *argv[])
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted.
// parallel mesh is defined, the serial mesh can be deleted. Tetrahedral
// meshes need to be reoriented before we can define high-order Nedelec
// spaces on them.
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
delete mesh;
{
@@ -131,6 +133,7 @@ int main(int argc, char *argv[])
pmesh->UniformRefinement();
}
}
pmesh->ReorientTetMesh();
// 6. Define a parallel finite element space on the parallel mesh. Here we
// use the Nedelec finite elements of the specified order.
+4 -1
View File
@@ -122,7 +122,9 @@ int main(int argc, char *argv[])
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted.
// parallel mesh is defined, the serial mesh can be deleted. Tetrahedral
// meshes need to be reoriented before we can define high-order Nedelec
// spaces on them (this is needed in the ADS solver below).
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
delete mesh;
{
@@ -132,6 +134,7 @@ int main(int argc, char *argv[])
pmesh->UniformRefinement();
}
}
pmesh->ReorientTetMesh();
// 6. Define a parallel finite element space on the parallel mesh. Here we
// use the Raviart-Thomas finite elements of the specified order.
-4
View File
@@ -282,10 +282,6 @@ int main(int argc, char *argv[])
superlu->SetOperator(*SLU_A);
superlu->SetPrintStatistics(true);
superlu->Mult(B, X);
superlu->DismantleGrid();
delete SLU_A;
delete superlu;
// 14. Recover the parallel grid function corresponding to X. This is the
// local finite element solution on each processor.
-9
View File
@@ -39,7 +39,6 @@ set(SRCS
complex_fem.cpp
convergence.cpp
datacollection.cpp
doftrans.cpp
eltrans.cpp
estimators.cpp
fe.cpp
@@ -106,7 +105,6 @@ set(SRCS
tmop/tmop_pa_w3.cpp
tmop/tmop_pa_w3_c0.cpp
tmop_tools.cpp
tmop_amr.cpp
gslib.cpp
transfer.cpp
lor.cpp
@@ -120,7 +118,6 @@ set(HDRS
complex_fem.hpp
convergence.hpp
datacollection.hpp
doftrans.hpp
eltrans.hpp
estimators.hpp
fe.hpp
@@ -167,7 +164,6 @@ set(HDRS
tmop.hpp
tmop/tmop_pa.hpp
tmop_tools.hpp
tmop_amr.hpp
gslib.hpp
transfer.hpp
lor.hpp
@@ -188,11 +184,6 @@ if (MFEM_USE_ADIOS2)
list(APPEND HDRS adios2datacollection.hpp)
endif()
if (MFEM_USE_FMS)
list(APPEND SRCS fmsdatacollection.cpp fmsconvert.cpp)
list(APPEND HDRS fmsdatacollection.hpp fmsconvert.hpp)
endif()
if (MFEM_USE_MPI)
list(APPEND SRCS
pbilinearform.cpp
+171 -265
View File
@@ -31,7 +31,7 @@ void BilinearForm::AllocMat()
const Table &elem_dof = fes->GetElementToDofTable();
Table dof_dof;
if (interior_face_integs.Size() > 0)
if (fbfi.Size() > 0)
{
// the sparsity pattern is defined from the map: face->element->dof
Table face_dof, dof_face;
@@ -99,15 +99,15 @@ BilinearForm::BilinearForm (FiniteElementSpace * f, BilinearForm * bf, int ps)
ext = NULL;
// Copy the pointers to the integrators
domain_integs = bf->domain_integs;
dbfi = bf->dbfi;
boundary_integs = bf->boundary_integs;
boundary_integs_marker = bf->boundary_integs_marker;
bbfi = bf->bbfi;
bbfi_marker = bf->bbfi_marker;
interior_face_integs = bf->interior_face_integs;
fbfi = bf->fbfi;
boundary_face_integs = bf->boundary_face_integs;
boundary_face_integs_marker = bf->boundary_face_integs_marker;
bfbfi = bf->bfbfi;
bfbfi_marker = bf->bfbfi_marker;
AllocMat();
}
@@ -234,47 +234,38 @@ void BilinearForm::Finalize (int skip_zeros)
void BilinearForm::AddDomainIntegrator(BilinearFormIntegrator *bfi)
{
domain_integs.Append(bfi);
domain_integs_marker.Append(NULL); // NULL marker means apply everywhere
}
void BilinearForm::AddDomainIntegrator(BilinearFormIntegrator *bfi,
Array<int> &elem_marker)
{
domain_integs.Append(bfi);
domain_integs_marker.Append(&elem_marker);
dbfi.Append(bfi);
}
void BilinearForm::AddBoundaryIntegrator (BilinearFormIntegrator * bfi)
{
boundary_integs.Append (bfi);
boundary_integs_marker.Append(NULL); // NULL marker means apply everywhere
bbfi.Append (bfi);
bbfi_marker.Append(NULL); // NULL marker means apply everywhere
}
void BilinearForm::AddBoundaryIntegrator (BilinearFormIntegrator * bfi,
Array<int> &bdr_marker)
{
boundary_integs.Append (bfi);
boundary_integs_marker.Append(&bdr_marker);
bbfi.Append (bfi);
bbfi_marker.Append(&bdr_marker);
}
void BilinearForm::AddInteriorFaceIntegrator(BilinearFormIntegrator * bfi)
void BilinearForm::AddInteriorFaceIntegrator (BilinearFormIntegrator * bfi)
{
interior_face_integs.Append (bfi);
fbfi.Append (bfi);
}
void BilinearForm::AddBdrFaceIntegrator(BilinearFormIntegrator *bfi)
{
boundary_face_integs.Append(bfi);
// NULL marker means apply everywhere
boundary_face_integs_marker.Append(NULL);
bfbfi.Append(bfi);
bfbfi_marker.Append(NULL); // NULL marker means apply everywhere
}
void BilinearForm::AddBdrFaceIntegrator(BilinearFormIntegrator *bfi,
Array<int> &bdr_marker)
{
boundary_face_integs.Append(bfi);
boundary_face_integs_marker.Append(&bdr_marker);
bfbfi.Append(bfi);
bfbfi_marker.Append(&bdr_marker);
}
void BilinearForm::ComputeElementMatrix(int i, DenseMatrix &elmat)
@@ -286,14 +277,14 @@ void BilinearForm::ComputeElementMatrix(int i, DenseMatrix &elmat)
return;
}
if (domain_integs.Size())
if (dbfi.Size())
{
const FiniteElement &fe = *fes->GetFE(i);
ElementTransformation *eltrans = fes->GetElementTransformation(i);
domain_integs[0]->AssembleElementMatrix(fe, *eltrans, elmat);
for (int k = 1; k < domain_integs.Size(); k++)
dbfi[0]->AssembleElementMatrix(fe, *eltrans, elmat);
for (int k = 1; k < dbfi.Size(); k++)
{
domain_integs[k]->AssembleElementMatrix(fe, *eltrans, elemmat);
dbfi[k]->AssembleElementMatrix(fe, *eltrans, elemmat);
elmat += elemmat;
}
}
@@ -307,14 +298,14 @@ void BilinearForm::ComputeElementMatrix(int i, DenseMatrix &elmat)
void BilinearForm::ComputeBdrElementMatrix(int i, DenseMatrix &elmat)
{
if (boundary_integs.Size())
if (bbfi.Size())
{
const FiniteElement &be = *fes->GetBE(i);
ElementTransformation *eltrans = fes->GetBdrElementTransformation(i);
boundary_integs[0]->AssembleElementMatrix(be, *eltrans, elmat);
for (int k = 1; k < boundary_integs.Size(); k++)
bbfi[0]->AssembleElementMatrix(be, *eltrans, elmat);
for (int k = 1; k < bbfi.Size(); k++)
{
boundary_integs[k]->AssembleElementMatrix(be, *eltrans, elemmat);
bbfi[k]->AssembleElementMatrix(be, *eltrans, elemmat);
elmat += elemmat;
}
}
@@ -391,7 +382,6 @@ void BilinearForm::Assemble(int skip_zeros)
}
ElementTransformation *eltrans;
DofTransformation * doftrans;
Mesh *mesh = fes -> GetMesh();
DenseMatrix elmat, *elmat_p;
@@ -409,59 +399,24 @@ void BilinearForm::Assemble(int skip_zeros)
}
#endif
if (domain_integs.Size())
if (dbfi.Size())
{
for (int k = 0; k < domain_integs.Size(); k++)
{
if (domain_integs_marker[k] != NULL)
{
MFEM_VERIFY(mesh->attributes.Size() ==
domain_integs_marker[k]->Size(),
"invalid element marker for domain integrator #"
<< k << ", counting from zero");
}
}
for (int i = 0; i < fes -> GetNE(); i++)
{
int elem_attr = fes->GetMesh()->GetAttribute(i);
doftrans = fes->GetElementVDofs(i, vdofs);
fes->GetElementVDofs(i, vdofs);
if (element_matrices)
{
elmat_p = &(*element_matrices)(i);
}
else
{
elmat.SetSize(0);
for (int k = 0; k < domain_integs.Size(); k++)
const FiniteElement &fe = *fes->GetFE(i);
eltrans = fes->GetElementTransformation(i);
dbfi[0]->AssembleElementMatrix(fe, *eltrans, elmat);
for (int k = 1; k < dbfi.Size(); k++)
{
if ( domain_integs_marker[k] == NULL ||
(*(domain_integs_marker[k]))[elem_attr-1] == 1)
{
const FiniteElement &fe = *fes->GetFE(i);
eltrans = fes->GetElementTransformation(i);
domain_integs[k]->AssembleElementMatrix(fe, *eltrans, elemmat);
if (elmat.Size() == 0)
{
elmat = elemmat;
}
else
{
elmat += elemmat;
}
}
}
if (elmat.Size() == 0)
{
continue;
}
else
{
elmat_p = &elmat;
}
if (doftrans)
{
doftrans->TransformDual(elmat);
dbfi[k]->AssembleElementMatrix(fe, *eltrans, elemmat);
elmat += elemmat;
}
elmat_p = &elmat;
}
@@ -480,20 +435,20 @@ void BilinearForm::Assemble(int skip_zeros)
}
}
if (boundary_integs.Size())
if (bbfi.Size())
{
// Which boundary attributes need to be processed?
Array<int> bdr_attr_marker(mesh->bdr_attributes.Size() ?
mesh->bdr_attributes.Max() : 0);
bdr_attr_marker = 0;
for (int k = 0; k < boundary_integs.Size(); k++)
for (int k = 0; k < bbfi.Size(); k++)
{
if (boundary_integs_marker[k] == NULL)
if (bbfi_marker[k] == NULL)
{
bdr_attr_marker = 1;
break;
}
Array<int> &bdr_marker = *boundary_integs_marker[k];
Array<int> &bdr_marker = *bbfi_marker[k];
MFEM_ASSERT(bdr_marker.Size() == bdr_attr_marker.Size(),
"invalid boundary marker for boundary integrator #"
<< k << ", counting from zero");
@@ -509,47 +464,42 @@ void BilinearForm::Assemble(int skip_zeros)
if (bdr_attr_marker[bdr_attr-1] == 0) { continue; }
const FiniteElement &be = *fes->GetBE(i);
doftrans = fes -> GetBdrElementVDofs (i, vdofs);
fes -> GetBdrElementVDofs (i, vdofs);
eltrans = fes -> GetBdrElementTransformation (i);
int k = 0;
for (; k < boundary_integs.Size(); k++)
for (; k < bbfi.Size(); k++)
{
if (boundary_integs_marker[k] &&
(*boundary_integs_marker[k])[bdr_attr-1] == 0) { continue; }
if (bbfi_marker[k] &&
(*bbfi_marker[k])[bdr_attr-1] == 0) { continue; }
boundary_integs[k]->AssembleElementMatrix(be, *eltrans, elmat);
bbfi[k]->AssembleElementMatrix(be, *eltrans, elmat);
k++;
break;
}
for (; k < boundary_integs.Size(); k++)
for (; k < bbfi.Size(); k++)
{
if (boundary_integs_marker[k] &&
(*boundary_integs_marker[k])[bdr_attr-1] == 0) { continue; }
if (bbfi_marker[k] &&
(*bbfi_marker[k])[bdr_attr-1] == 0) { continue; }
boundary_integs[k]->AssembleElementMatrix(be, *eltrans, elemmat);
bbfi[k]->AssembleElementMatrix(be, *eltrans, elemmat);
elmat += elemmat;
}
if (doftrans)
{
doftrans->TransformDual(elmat);
}
elmat_p = &elmat;
if (!static_cond)
{
mat->AddSubMatrix(vdofs, vdofs, *elmat_p, skip_zeros);
mat->AddSubMatrix(vdofs, vdofs, elmat, skip_zeros);
if (hybridization)
{
hybridization->AssembleBdrMatrix(i, *elmat_p);
hybridization->AssembleBdrMatrix(i, elmat);
}
}
else
{
static_cond->AssembleBdrMatrix(i, *elmat_p);
static_cond->AssembleBdrMatrix(i, elmat);
}
}
}
if (interior_face_integs.Size())
if (fbfi.Size())
{
FaceElementTransformations *tr;
Array<int> vdofs2;
@@ -563,19 +513,18 @@ void BilinearForm::Assemble(int skip_zeros)
fes -> GetElementVDofs (tr -> Elem1No, vdofs);
fes -> GetElementVDofs (tr -> Elem2No, vdofs2);
vdofs.Append (vdofs2);
for (int k = 0; k < interior_face_integs.Size(); k++)
for (int k = 0; k < fbfi.Size(); k++)
{
interior_face_integs[k]->
AssembleFaceMatrix(*fes->GetFE(tr->Elem1No),
*fes->GetFE(tr->Elem2No),
*tr, elemmat);
fbfi[k] -> AssembleFaceMatrix (*fes -> GetFE (tr -> Elem1No),
*fes -> GetFE (tr -> Elem2No),
*tr, elemmat);
mat -> AddSubMatrix (vdofs, vdofs, elemmat, skip_zeros);
}
}
}
}
if (boundary_face_integs.Size())
if (bfbfi.Size())
{
FaceElementTransformations *tr;
const FiniteElement *fe1, *fe2;
@@ -584,14 +533,14 @@ void BilinearForm::Assemble(int skip_zeros)
Array<int> bdr_attr_marker(mesh->bdr_attributes.Size() ?
mesh->bdr_attributes.Max() : 0);
bdr_attr_marker = 0;
for (int k = 0; k < boundary_face_integs.Size(); k++)
for (int k = 0; k < bfbfi.Size(); k++)
{
if (boundary_face_integs_marker[k] == NULL)
if (bfbfi_marker[k] == NULL)
{
bdr_attr_marker = 1;
break;
}
Array<int> &bdr_marker = *boundary_face_integs_marker[k];
Array<int> &bdr_marker = *bfbfi_marker[k];
MFEM_ASSERT(bdr_marker.Size() == bdr_attr_marker.Size(),
"invalid boundary marker for boundary face integrator #"
<< k << ", counting from zero");
@@ -615,14 +564,12 @@ void BilinearForm::Assemble(int skip_zeros)
// but we can't dereference a NULL pointer, and we don't want to
// actually make a fake element.
fe2 = fe1;
for (int k = 0; k < boundary_face_integs.Size(); k++)
for (int k = 0; k < bfbfi.Size(); k++)
{
if (boundary_face_integs_marker[k] &&
(*boundary_face_integs_marker[k])[bdr_attr-1] == 0)
{ continue; }
if (bfbfi_marker[k] &&
(*bfbfi_marker[k])[bdr_attr-1] == 0) { continue; }
boundary_face_integs[k] -> AssembleFaceMatrix (*fe1, *fe2, *tr,
elemmat);
bfbfi[k] -> AssembleFaceMatrix (*fe1, *fe2, *tr, elemmat);
mat -> AddSubMatrix (vdofs, vdofs, elemmat, skip_zeros);
}
}
@@ -736,8 +683,8 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
{
// A, X and B point to the same data as mat, x and b
EliminateVDofsInRHS(ess_tdof_list, x, b);
X.MakeRef(x, 0, x.Size());
B.MakeRef(b, 0, b.Size());
X.NewMemoryAndSize(x.GetMemory(), x.Size(), false);
B.NewMemoryAndSize(b.GetMemory(), b.Size(), false);
if (!copy_interior) { X.SetSubVectorComplement(ess_tdof_list, 0.0); }
}
}
@@ -873,7 +820,7 @@ void BilinearForm::RecoverFEMSolution(const Vector &X,
void BilinearForm::ComputeElementMatrices()
{
if (element_matrices || domain_integs.Size() == 0 || fes->GetNE() == 0)
if (element_matrices || dbfi.Size() == 0 || fes->GetNE() == 0)
{
return;
}
@@ -902,11 +849,11 @@ void BilinearForm::ComputeElementMatrices()
#endif
fes->GetElementTransformation(i, &eltrans);
domain_integs[0]->AssembleElementMatrix(fe, eltrans, elmat);
for (int k = 1; k < domain_integs.Size(); k++)
dbfi[0]->AssembleElementMatrix(fe, eltrans, elmat);
for (int k = 1; k < dbfi.Size(); k++)
{
// note: some integrators may not be thread-safe
domain_integs[k]->AssembleElementMatrix(fe, eltrans, tmp);
dbfi[k]->AssembleElementMatrix(fe, eltrans, tmp);
elmat += tmp;
}
elmat.ClearExternalData();
@@ -1121,12 +1068,10 @@ BilinearForm::~BilinearForm()
if (!extern_bfs)
{
int k;
for (k=0; k < domain_integs.Size(); k++) { delete domain_integs[k]; }
for (k=0; k < boundary_integs.Size(); k++) { delete boundary_integs[k]; }
for (k=0; k < interior_face_integs.Size(); k++)
{ delete interior_face_integs[k]; }
for (k=0; k < boundary_face_integs.Size(); k++)
{ delete boundary_face_integs[k]; }
for (k=0; k < dbfi.Size(); k++) { delete dbfi[k]; }
for (k=0; k < bbfi.Size(); k++) { delete bbfi[k]; }
for (k=0; k < fbfi.Size(); k++) { delete fbfi[k]; }
for (k=0; k < bfbfi.Size(); k++) { delete bfbfi[k]; }
}
delete ext;
@@ -1159,13 +1104,13 @@ MixedBilinearForm::MixedBilinearForm (FiniteElementSpace *tr_fes,
ext = NULL;
// Copy the pointers to the integrators
domain_integs = mbf->domain_integs;
boundary_integs = mbf->boundary_integs;
trace_face_integs = mbf->trace_face_integs;
boundary_trace_face_integs = mbf->boundary_trace_face_integs;
dbfi = mbf->dbfi;
bbfi = mbf->bbfi;
tfbfi = mbf->tfbfi;
btfbfi = mbf->btfbfi;
boundary_integs_marker = mbf->boundary_integs_marker;
boundary_trace_face_integs_marker = mbf->boundary_trace_face_integs_marker;
bbfi_marker = mbf->bbfi_marker;
btfbfi_marker = mbf->btfbfi_marker;
assembly = AssemblyLevel::LEGACY;
ext = NULL;
@@ -1254,8 +1199,7 @@ MatrixInverse * MixedBilinearForm::Inverse() const
{
if (assembly != AssemblyLevel::LEGACY)
{
MFEM_WARNING("MixedBilinearForm::Inverse not possible with this "
"assembly level!");
MFEM_WARNING("MixedBilinearForm::Inverse not possible with this assembly level!");
return NULL;
}
else
@@ -1286,39 +1230,38 @@ void MixedBilinearForm::GetBlocks(Array2D<SparseMatrix *> &blocks) const
void MixedBilinearForm::AddDomainIntegrator (BilinearFormIntegrator * bfi)
{
domain_integs.Append (bfi);
dbfi.Append (bfi);
}
void MixedBilinearForm::AddBoundaryIntegrator (BilinearFormIntegrator * bfi)
{
boundary_integs.Append (bfi);
boundary_integs_marker.Append(NULL); // NULL marker means apply everywhere
bbfi.Append (bfi);
bbfi_marker.Append(NULL); // NULL marker means apply everywhere
}
void MixedBilinearForm::AddBoundaryIntegrator (BilinearFormIntegrator * bfi,
Array<int> &bdr_marker)
{
boundary_integs.Append (bfi);
boundary_integs_marker.Append(&bdr_marker);
bbfi.Append (bfi);
bbfi_marker.Append(&bdr_marker);
}
void MixedBilinearForm::AddTraceFaceIntegrator (BilinearFormIntegrator * bfi)
{
trace_face_integs.Append (bfi);
tfbfi.Append (bfi);
}
void MixedBilinearForm::AddBdrTraceFaceIntegrator(BilinearFormIntegrator *bfi)
{
boundary_trace_face_integs.Append(bfi);
// NULL marker means apply everywhere
boundary_trace_face_integs_marker.Append(NULL);
btfbfi.Append(bfi);
btfbfi_marker.Append(NULL); // NULL marker means apply everywhere
}
void MixedBilinearForm::AddBdrTraceFaceIntegrator(BilinearFormIntegrator *bfi,
Array<int> &bdr_marker)
{
boundary_trace_face_integs.Append(bfi);
boundary_trace_face_integs_marker.Append(&bdr_marker);
btfbfi.Append(bfi);
btfbfi_marker.Append(&bdr_marker);
}
void MixedBilinearForm::Assemble (int skip_zeros)
@@ -1329,10 +1272,9 @@ void MixedBilinearForm::Assemble (int skip_zeros)
return;
}
Array<int> tr_vdofs, te_vdofs;
ElementTransformation *eltrans;
DofTransformation * dom_dof_trans;
DofTransformation * ran_dof_trans;
DenseMatrix elmat;
DenseMatrix elemmat;
Mesh *mesh = test_fes -> GetMesh();
@@ -1341,45 +1283,37 @@ void MixedBilinearForm::Assemble (int skip_zeros)
mat = new SparseMatrix(height, width);
}
if (domain_integs.Size())
if (dbfi.Size())
{
for (int i = 0; i < test_fes -> GetNE(); i++)
{
dom_dof_trans = trial_fes -> GetElementVDofs (i, trial_vdofs);
ran_dof_trans = test_fes -> GetElementVDofs (i, test_vdofs);
trial_fes -> GetElementVDofs (i, tr_vdofs);
test_fes -> GetElementVDofs (i, te_vdofs);
eltrans = test_fes -> GetElementTransformation (i);
elmat.SetSize(test_vdofs.Size(), trial_vdofs.Size());
elmat = 0.0;
for (int k = 0; k < domain_integs.Size(); k++)
for (int k = 0; k < dbfi.Size(); k++)
{
domain_integs[k] -> AssembleElementMatrix2 (*trial_fes -> GetFE(i),
*test_fes -> GetFE(i),
*eltrans, elemmat);
elmat += elemmat;
dbfi[k] -> AssembleElementMatrix2 (*trial_fes -> GetFE(i),
*test_fes -> GetFE(i),
*eltrans, elemmat);
mat -> AddSubMatrix (te_vdofs, tr_vdofs, elemmat, skip_zeros);
}
if (ran_dof_trans || dom_dof_trans)
{
TransformDual(ran_dof_trans, dom_dof_trans, elmat);
}
mat -> AddSubMatrix (test_vdofs, trial_vdofs, elmat, skip_zeros);
}
}
if (boundary_integs.Size())
if (bbfi.Size())
{
// Which boundary attributes need to be processed?
Array<int> bdr_attr_marker(mesh->bdr_attributes.Size() ?
mesh->bdr_attributes.Max() : 0);
bdr_attr_marker = 0;
for (int k = 0; k < boundary_integs.Size(); k++)
for (int k = 0; k < bbfi.Size(); k++)
{
if (boundary_integs_marker[k] == NULL)
if (bbfi_marker[k] == NULL)
{
bdr_attr_marker = 1;
break;
}
Array<int> &bdr_marker = *boundary_integs_marker[k];
Array<int> &bdr_marker = *bbfi_marker[k];
MFEM_ASSERT(bdr_marker.Size() == bdr_attr_marker.Size(),
"invalid boundary marker for boundary integrator #"
<< k << ", counting from zero");
@@ -1394,48 +1328,40 @@ void MixedBilinearForm::Assemble (int skip_zeros)
const int bdr_attr = mesh->GetBdrAttribute(i);
if (bdr_attr_marker[bdr_attr-1] == 0) { continue; }
dom_dof_trans = trial_fes -> GetBdrElementVDofs (i, trial_vdofs);
ran_dof_trans = test_fes -> GetBdrElementVDofs (i, test_vdofs);
trial_fes -> GetBdrElementVDofs (i, tr_vdofs);
test_fes -> GetBdrElementVDofs (i, te_vdofs);
eltrans = test_fes -> GetBdrElementTransformation (i);
elmat.SetSize(test_vdofs.Size(), trial_vdofs.Size());
elmat = 0.0;
for (int k = 0; k < boundary_integs.Size(); k++)
for (int k = 0; k < bbfi.Size(); k++)
{
if (boundary_integs_marker[k] &&
(*boundary_integs_marker[k])[bdr_attr-1] == 0) { continue; }
if (bbfi_marker[k] &&
(*bbfi_marker[k])[bdr_attr-1] == 0) { continue; }
boundary_integs[k]->AssembleElementMatrix2 (*trial_fes -> GetBE(i),
*test_fes -> GetBE(i),
*eltrans, elemmat);
elmat += elemmat;
bbfi[k] -> AssembleElementMatrix2 (*trial_fes -> GetBE(i),
*test_fes -> GetBE(i),
*eltrans, elemmat);
mat -> AddSubMatrix (te_vdofs, tr_vdofs, elemmat, skip_zeros);
}
if (ran_dof_trans || dom_dof_trans)
{
TransformDual(ran_dof_trans, dom_dof_trans, elmat);
}
mat -> AddSubMatrix (test_vdofs, trial_vdofs, elmat, skip_zeros);
}
}
if (trace_face_integs.Size())
if (tfbfi.Size())
{
FaceElementTransformations *ftr;
Array<int> test_vdofs2;
Array<int> te_vdofs2;
const FiniteElement *trial_face_fe, *test_fe1, *test_fe2;
int nfaces = mesh->GetNumFaces();
for (int i = 0; i < nfaces; i++)
{
ftr = mesh->GetFaceElementTransformations(i);
trial_fes->GetFaceVDofs(i, trial_vdofs);
test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs);
trial_fes->GetFaceVDofs(i, tr_vdofs);
test_fes->GetElementVDofs(ftr->Elem1No, te_vdofs);
trial_face_fe = trial_fes->GetFaceElement(i);
test_fe1 = test_fes->GetFE(ftr->Elem1No);
if (ftr->Elem2No >= 0)
{
test_fes->GetElementVDofs(ftr->Elem2No, test_vdofs2);
test_vdofs.Append(test_vdofs2);
test_fes->GetElementVDofs(ftr->Elem2No, te_vdofs2);
te_vdofs.Append(te_vdofs2);
test_fe2 = test_fes->GetFE(ftr->Elem2No);
}
else
@@ -1445,16 +1371,16 @@ void MixedBilinearForm::Assemble (int skip_zeros)
// want to actually make a fake element.
test_fe2 = test_fe1;
}
for (int k = 0; k < trace_face_integs.Size(); k++)
for (int k = 0; k < tfbfi.Size(); k++)
{
trace_face_integs[k]->AssembleFaceMatrix(*trial_face_fe, *test_fe1,
*test_fe2, *ftr, elemmat);
mat->AddSubMatrix(test_vdofs, trial_vdofs, elemmat, skip_zeros);
tfbfi[k]->AssembleFaceMatrix(*trial_face_fe, *test_fe1, *test_fe2,
*ftr, elemmat);
mat->AddSubMatrix(te_vdofs, tr_vdofs, elemmat, skip_zeros);
}
}
}
if (boundary_trace_face_integs.Size())
if (btfbfi.Size())
{
FaceElementTransformations *ftr;
Array<int> te_vdofs2;
@@ -1464,17 +1390,17 @@ void MixedBilinearForm::Assemble (int skip_zeros)
Array<int> bdr_attr_marker(mesh->bdr_attributes.Size() ?
mesh->bdr_attributes.Max() : 0);
bdr_attr_marker = 0;
for (int k = 0; k < boundary_trace_face_integs.Size(); k++)
for (int k = 0; k < btfbfi.Size(); k++)
{
if (boundary_trace_face_integs_marker[k] == NULL)
if (btfbfi_marker[k] == NULL)
{
bdr_attr_marker = 1;
break;
}
Array<int> &bdr_marker = *boundary_trace_face_integs_marker[k];
Array<int> &bdr_marker = *btfbfi_marker[k];
MFEM_ASSERT(bdr_marker.Size() == bdr_attr_marker.Size(),
"invalid boundary marker for boundary trace face"
"integrator #" << k << ", counting from zero");
"invalid boundary marker for boundary trace face integrator #"
<< k << ", counting from zero");
for (int i = 0; i < bdr_attr_marker.Size(); i++)
{
bdr_attr_marker[i] |= bdr_marker[i];
@@ -1489,25 +1415,22 @@ void MixedBilinearForm::Assemble (int skip_zeros)
ftr = mesh->GetBdrFaceTransformations(i);
if (ftr)
{
trial_fes->GetFaceVDofs(ftr->ElementNo, trial_vdofs);
test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs);
trial_fes->GetFaceVDofs(ftr->ElementNo, tr_vdofs);
test_fes->GetElementVDofs(ftr->Elem1No, te_vdofs);
trial_face_fe = trial_fes->GetFaceElement(ftr->ElementNo);
test_fe1 = test_fes->GetFE(ftr->Elem1No);
// The test_fe2 object is really a dummy and not used on the
// boundaries, but we can't dereference a NULL pointer, and we don't
// want to actually make a fake element.
test_fe2 = test_fe1;
for (int k = 0; k < boundary_trace_face_integs.Size(); k++)
for (int k = 0; k < btfbfi.Size(); k++)
{
if (boundary_trace_face_integs_marker[k] &&
(*boundary_trace_face_integs_marker[k])[bdr_attr-1] == 0)
{ continue; }
if (btfbfi_marker[k] &&
(*btfbfi_marker[k])[bdr_attr-1] == 0) { continue; }
boundary_trace_face_integs[k]->AssembleFaceMatrix(*trial_face_fe,
*test_fe1,
*test_fe2,
*ftr, elemmat);
mat->AddSubMatrix(test_vdofs, trial_vdofs, elemmat, skip_zeros);
btfbfi[k]->AssembleFaceMatrix(*trial_face_fe, *test_fe1, *test_fe2,
*ftr, elemmat);
mat->AddSubMatrix(te_vdofs, tr_vdofs, elemmat, skip_zeros);
}
}
}
@@ -1597,17 +1520,15 @@ void MixedBilinearForm::ConformingAssemble()
void MixedBilinearForm::ComputeElementMatrix(int i, DenseMatrix &elmat)
{
if (domain_integs.Size())
if (dbfi.Size())
{
const FiniteElement &trial_fe = *trial_fes->GetFE(i);
const FiniteElement &test_fe = *test_fes->GetFE(i);
ElementTransformation *eltrans = test_fes->GetElementTransformation(i);
domain_integs[0]->AssembleElementMatrix2(trial_fe, test_fe, *eltrans,
elmat);
for (int k = 1; k < domain_integs.Size(); k++)
dbfi[0]->AssembleElementMatrix2(trial_fe, test_fe, *eltrans, elmat);
for (int k = 1; k < dbfi.Size(); k++)
{
domain_integs[k]->AssembleElementMatrix2(trial_fe, test_fe, *eltrans,
elemmat);
dbfi[k]->AssembleElementMatrix2(trial_fe, test_fe, *eltrans, elemmat);
elmat += elemmat;
}
}
@@ -1622,17 +1543,15 @@ void MixedBilinearForm::ComputeElementMatrix(int i, DenseMatrix &elmat)
void MixedBilinearForm::ComputeBdrElementMatrix(int i, DenseMatrix &elmat)
{
if (boundary_integs.Size())
if (bbfi.Size())
{
const FiniteElement &trial_be = *trial_fes->GetBE(i);
const FiniteElement &test_be = *test_fes->GetBE(i);
ElementTransformation *eltrans = test_fes->GetBdrElementTransformation(i);
boundary_integs[0]->AssembleElementMatrix2(trial_be, test_be, *eltrans,
elmat);
for (int k = 1; k < boundary_integs.Size(); k++)
bbfi[0]->AssembleElementMatrix2(trial_be, test_be, *eltrans, elmat);
for (int k = 1; k < bbfi.Size(); k++)
{
boundary_integs[k]->AssembleElementMatrix2(trial_be, test_be, *eltrans,
elemmat);
bbfi[k]->AssembleElementMatrix2(trial_be, test_be, *eltrans, elemmat);
elmat += elemmat;
}
}
@@ -1732,10 +1651,10 @@ void MixedBilinearForm::EliminateTestDofs (const Array<int> &bdr_attr_is_ess)
}
}
void MixedBilinearForm::FormRectangularSystemMatrix(
const Array<int> &trial_tdof_list,
const Array<int> &test_tdof_list,
OperatorHandle &A)
void MixedBilinearForm::FormRectangularSystemMatrix(const Array<int>
&trial_tdof_list,
const Array<int> &test_tdof_list,
OperatorHandle &A)
{
if (ext)
@@ -1773,17 +1692,17 @@ void MixedBilinearForm::FormRectangularSystemMatrix(
A.Reset(mat, false);
}
void MixedBilinearForm::FormRectangularLinearSystem(
const Array<int> &trial_tdof_list,
const Array<int> &test_tdof_list,
Vector &x, Vector &b,
OperatorHandle &A,
Vector &X, Vector &B)
void MixedBilinearForm::FormRectangularLinearSystem(const Array<int>
&trial_tdof_list,
const Array<int> &test_tdof_list,
Vector &x, Vector &b,
OperatorHandle &A,
Vector &X, Vector &B)
{
if (ext)
{
ext->FormRectangularLinearSystem(trial_tdof_list, test_tdof_list,
x, b, A, X, B);
ext->FormRectangularLinearSystem(trial_tdof_list, test_tdof_list, x, b, A, X,
B);
return;
}
@@ -1821,13 +1740,10 @@ MixedBilinearForm::~MixedBilinearForm()
if (!extern_bfs)
{
int i;
for (i = 0; i < domain_integs.Size(); i++) { delete domain_integs[i]; }
for (i = 0; i < boundary_integs.Size(); i++)
{ delete boundary_integs[i]; }
for (i = 0; i < trace_face_integs.Size(); i++)
{ delete trace_face_integs[i]; }
for (i = 0; i < boundary_trace_face_integs.Size(); i++)
{ delete boundary_trace_face_integs[i]; }
for (i = 0; i < dbfi.Size(); i++) { delete dbfi[i]; }
for (i = 0; i < bbfi.Size(); i++) { delete bbfi[i]; }
for (i = 0; i < tfbfi.Size(); i++) { delete tfbfi[i]; }
for (i = 0; i < btfbfi.Size(); i++) { delete btfbfi[i]; }
}
delete ext;
}
@@ -1869,8 +1785,6 @@ void DiscreteLinearOperator::Assemble(int skip_zeros)
Array<int> dom_vdofs, ran_vdofs;
ElementTransformation *T;
DofTransformation * dom_dof_trans;
DofTransformation * ran_dof_trans;
const FiniteElement *dom_fe, *ran_fe;
DenseMatrix totelmat, elmat;
@@ -1879,33 +1793,27 @@ void DiscreteLinearOperator::Assemble(int skip_zeros)
mat = new SparseMatrix(height, width);
}
if (domain_integs.Size() > 0)
if (dbfi.Size() > 0)
{
for (int i = 0; i < test_fes->GetNE(); i++)
{
dom_dof_trans = trial_fes->GetElementVDofs(i, dom_vdofs);
ran_dof_trans = test_fes->GetElementVDofs(i, ran_vdofs);
trial_fes->GetElementVDofs(i, dom_vdofs);
test_fes->GetElementVDofs(i, ran_vdofs);
T = test_fes->GetElementTransformation(i);
dom_fe = trial_fes->GetFE(i);
ran_fe = test_fes->GetFE(i);
domain_integs[0]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T,
totelmat);
for (int j = 1; j < domain_integs.Size(); j++)
dbfi[0]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T, totelmat);
for (int j = 1; j < dbfi.Size(); j++)
{
domain_integs[j]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T,
elmat);
dbfi[j]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T, elmat);
totelmat += elmat;
}
if (ran_dof_trans || dom_dof_trans)
{
TransformPrimal(ran_dof_trans, dom_dof_trans, totelmat);
}
mat->SetSubMatrix(ran_vdofs, dom_vdofs, totelmat, skip_zeros);
}
}
if (trace_face_integs.Size())
if (tfbfi.Size())
{
const int nfaces = test_fes->GetMesh()->GetNumFaces();
for (int i = 0; i < nfaces; i++)
@@ -1916,12 +1824,10 @@ void DiscreteLinearOperator::Assemble(int skip_zeros)
dom_fe = trial_fes->GetFaceElement(i);
ran_fe = test_fes->GetFaceElement(i);
trace_face_integs[0]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T,
totelmat);
for (int j = 1; j < trace_face_integs.Size(); j++)
tfbfi[0]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T, totelmat);
for (int j = 1; j < tfbfi.Size(); j++)
{
trace_face_integs[j]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T,
elmat);
tfbfi[j]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T, elmat);
totelmat += elmat;
}
mat->SetSubMatrix(ran_vdofs, dom_vdofs, totelmat, skip_zeros);
+29 -44
View File
@@ -84,29 +84,23 @@ protected:
the BilinearForm. */
long sequence;
/** @brief Indicates the BilinearFormIntegrator%s stored in #domain_integs,
#boundary_integs, #interior_face_integs, and #boundary_face_integs are
owned by another BilinearForm. */
/** @brief Indicates the BilinearFormIntegrator%s stored in #dbfi, #bbfi,
#fbfi, and #bfbfi are owned by another BilinearForm. */
int extern_bfs;
/// Set of Domain Integrators to be applied.
Array<BilinearFormIntegrator*> domain_integs;
/// Element attribute marker (should be of length mesh->attributes)
/// Includes all by default.
/// 0 - ignore attribute
/// 1 - include attribute
Array<Array<int>*> domain_integs_marker;
Array<BilinearFormIntegrator*> dbfi;
/// Set of Boundary Integrators to be applied.
Array<BilinearFormIntegrator*> boundary_integs;
Array<Array<int>*> boundary_integs_marker; ///< Entries are not owned.
Array<BilinearFormIntegrator*> bbfi;
Array<Array<int>*> bbfi_marker; ///< Entries are not owned.
/// Set of interior face Integrators to be applied.
Array<BilinearFormIntegrator*> interior_face_integs;
Array<BilinearFormIntegrator*> fbfi;
/// Set of boundary face Integrators to be applied.
Array<BilinearFormIntegrator*> boundary_face_integs;
Array<Array<int>*> boundary_face_integs_marker; ///< Entries are not owned.
Array<BilinearFormIntegrator*> bfbfi;
Array<Array<int>*> bfbfi_marker; ///< Entries are not owned.
DenseMatrix elemmat;
Array<int> vdofs;
@@ -232,25 +226,24 @@ public:
void AllocateMatrix() { if (mat == NULL) { AllocMat(); } }
/// Access all the integrators added with AddDomainIntegrator().
Array<BilinearFormIntegrator*> *GetDBFI() { return &domain_integs; }
Array<BilinearFormIntegrator*> *GetDBFI() { return &dbfi; }
/// Access all the integrators added with AddBoundaryIntegrator().
Array<BilinearFormIntegrator*> *GetBBFI() { return &boundary_integs; }
Array<BilinearFormIntegrator*> *GetBBFI() { return &bbfi; }
/** @brief Access all boundary markers added with AddBoundaryIntegrator().
If no marker was specified when the integrator was added, the
corresponding pointer (to Array<int>) will be NULL. */
Array<Array<int>*> *GetBBFI_Marker() { return &boundary_integs_marker; }
Array<Array<int>*> *GetBBFI_Marker() { return &bbfi_marker; }
/// Access all integrators added with AddInteriorFaceIntegrator().
Array<BilinearFormIntegrator*> *GetFBFI() { return &interior_face_integs; }
Array<BilinearFormIntegrator*> *GetFBFI() { return &fbfi; }
/// Access all integrators added with AddBdrFaceIntegrator().
Array<BilinearFormIntegrator*> *GetBFBFI() { return &boundary_face_integs; }
Array<BilinearFormIntegrator*> *GetBFBFI() { return &bfbfi; }
/** @brief Access all boundary markers added with AddBdrFaceIntegrator().
If no marker was specified when the integrator was added, the
corresponding pointer (to Array<int>) will be NULL. */
Array<Array<int>*> *GetBFBFI_Marker()
{ return &boundary_face_integs_marker; }
Array<Array<int>*> *GetBFBFI_Marker() { return &bfbfi_marker; }
/// Returns a reference to: \f$ M_{ij} \f$
const double &operator()(int i, int j) { return (*mat)(i,j); }
@@ -339,10 +332,6 @@ public:
/// Adds new Domain Integrator. Assumes ownership of @a bfi.
void AddDomainIntegrator(BilinearFormIntegrator *bfi);
/// Adds new Domain Integrator restricted to certain elements specified by
/// the @a elem_attr_marker.
void AddDomainIntegrator(BilinearFormIntegrator *bfi,
Array<int> &elem_marker);
/// Adds new Boundary Integrator. Assumes ownership of @a bfi.
void AddBoundaryIntegrator(BilinearFormIntegrator *bfi);
@@ -654,25 +643,23 @@ protected:
Partial Assembly (PA), or Matrix Free assembly (MF). */
MixedBilinearFormExtension *ext;
/** @brief Indicates the BilinearFormIntegrator%s stored in #domain_integs,
#boundary_integs, #trace_face_integs and #boundary_trace_face_integs
are owned by another MixedBilinearForm. */
/** @brief Indicates the BilinearFormIntegrator%s stored in #dbfi, #bbfi,
#tfbfi and #btfbfi are owned by another MixedBilinearForm. */
int extern_bfs;
/// Domain integrators.
Array<BilinearFormIntegrator*> domain_integs;
Array<BilinearFormIntegrator*> dbfi;
/// Boundary integrators.
Array<BilinearFormIntegrator*> boundary_integs;
Array<Array<int>*> boundary_integs_marker; ///< Entries are not owned.
Array<BilinearFormIntegrator*> bbfi;
Array<Array<int>*> bbfi_marker;///< Entries are not owned.
/// Trace face (skeleton) integrators.
Array<BilinearFormIntegrator*> trace_face_integs;
Array<BilinearFormIntegrator*> tfbfi;
/// Boundary trace face (skeleton) integrators.
Array<BilinearFormIntegrator*> boundary_trace_face_integs;
/// Entries are not owned.
Array<Array<int>*> boundary_trace_face_integs_marker;
Array<BilinearFormIntegrator*> btfbfi;
Array<Array<int>*> btfbfi_marker;///< Entries are not owned.
DenseMatrix elemmat;
Array<int> trial_vdofs, test_vdofs;
@@ -766,26 +753,24 @@ public:
Array<int> &bdr_marker);
/// Access all integrators added with AddDomainIntegrator().
Array<BilinearFormIntegrator*> *GetDBFI() { return &domain_integs; }
Array<BilinearFormIntegrator*> *GetDBFI() { return &dbfi; }
/// Access all integrators added with AddBoundaryIntegrator().
Array<BilinearFormIntegrator*> *GetBBFI() { return &boundary_integs; }
Array<BilinearFormIntegrator*> *GetBBFI() { return &bbfi; }
/** @brief Access all boundary markers added with AddBoundaryIntegrator().
If no marker was specified when the integrator was added, the
corresponding pointer (to Array<int>) will be NULL. */
Array<Array<int>*> *GetBBFI_Marker() { return &boundary_integs_marker; }
Array<Array<int>*> *GetBBFI_Marker() { return &bbfi_marker; }
/// Access all integrators added with AddTraceFaceIntegrator().
Array<BilinearFormIntegrator*> *GetTFBFI() { return &trace_face_integs; }
Array<BilinearFormIntegrator*> *GetTFBFI() { return &tfbfi; }
/// Access all integrators added with AddBdrTraceFaceIntegrator().
Array<BilinearFormIntegrator*> *GetBTFBFI()
{ return &boundary_trace_face_integs; }
Array<BilinearFormIntegrator*> *GetBTFBFI() { return &btfbfi; }
/** @brief Access all boundary markers added with AddBdrTraceFaceIntegrator().
If no marker was specified when the integrator was added, the
corresponding pointer (to Array<int>) will be NULL. */
Array<Array<int>*> *GetBTFBFI_Marker()
{ return &boundary_trace_face_integs_marker; }
Array<Array<int>*> *GetBTFBFI_Marker() { return &btfbfi_marker; }
/// Sets all sparse values of \f$ M \f$ to @a a.
void operator=(const double a) { *mat = a; }
@@ -1010,7 +995,7 @@ public:
{ AddTraceFaceIntegrator(di); }
/// Access all interpolators added with AddDomainInterpolator().
Array<BilinearFormIntegrator*> *GetDI() { return &domain_integs; }
Array<BilinearFormIntegrator*> *GetDI() { return &dbfi; }
/// Set the desired assembly level. The default is AssemblyLevel::FULL.
/** This method must be called before assembly. */
+12 -12
View File
@@ -160,7 +160,7 @@ void MFBilinearFormExtension::Mult(const Vector &x, Vector &y) const
{
intFaceIntegrators[i]->AddMultMF(faceIntX, faceIntY);
}
int_face_restrict_lex->AddMultTranspose(faceIntY, y);
int_face_restrict_lex->MultTranspose(faceIntY, y);
}
}
@@ -176,7 +176,7 @@ void MFBilinearFormExtension::Mult(const Vector &x, Vector &y) const
{
bdrFaceIntegrators[i]->AddMultMF(faceBdrX, faceBdrY);
}
bdr_face_restrict_lex->AddMultTranspose(faceBdrY, y);
bdr_face_restrict_lex->MultTranspose(faceBdrY, y);
}
}
}
@@ -217,7 +217,7 @@ void MFBilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
{
intFaceIntegrators[i]->AddMultTransposeMF(faceIntX, faceIntY);
}
int_face_restrict_lex->AddMultTranspose(faceIntY, y);
int_face_restrict_lex->MultTranspose(faceIntY, y);
}
}
@@ -233,7 +233,7 @@ void MFBilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
{
bdrFaceIntegrators[i]->AddMultTransposeMF(faceBdrX, faceBdrY);
}
bdr_face_restrict_lex->AddMultTranspose(faceBdrY, y);
bdr_face_restrict_lex->MultTranspose(faceBdrY, y);
}
}
}
@@ -417,7 +417,7 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
{
intFaceIntegrators[i]->AddMultPA(faceIntX, faceIntY);
}
int_face_restrict_lex->AddMultTranspose(faceIntY, y);
int_face_restrict_lex->MultTranspose(faceIntY, y);
}
}
@@ -433,7 +433,7 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
{
bdrFaceIntegrators[i]->AddMultPA(faceBdrX, faceBdrY);
}
bdr_face_restrict_lex->AddMultTranspose(faceBdrY, y);
bdr_face_restrict_lex->MultTranspose(faceBdrY, y);
}
}
}
@@ -474,7 +474,7 @@ void PABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
{
intFaceIntegrators[i]->AddMultTransposePA(faceIntX, faceIntY);
}
int_face_restrict_lex->AddMultTranspose(faceIntY, y);
int_face_restrict_lex->MultTranspose(faceIntY, y);
}
}
@@ -490,7 +490,7 @@ void PABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
{
bdrFaceIntegrators[i]->AddMultTransposePA(faceBdrX, faceBdrY);
}
bdr_face_restrict_lex->AddMultTranspose(faceBdrY, y);
bdr_face_restrict_lex->MultTranspose(faceBdrY, y);
}
}
}
@@ -657,7 +657,7 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
Y(j, 0, f) += res;
});
// Apply the Interior Face Restriction transposed
int_face_restrict_lex->AddMultTranspose(faceIntY, y);
int_face_restrict_lex->MultTranspose(faceIntY, y);
}
}
@@ -688,7 +688,7 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
Y(j, f) += res;
});
// Apply the Boundary Face Restriction transposed
bdr_face_restrict_lex->AddMultTranspose(faceBdrY, y);
bdr_face_restrict_lex->MultTranspose(faceBdrY, y);
}
}
}
@@ -783,7 +783,7 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
Y(j, 0, f) += res;
});
// Apply the Interior Face Restriction transposed
int_face_restrict_lex->AddMultTranspose(faceIntY, y);
int_face_restrict_lex->MultTranspose(faceIntY, y);
}
}
@@ -814,7 +814,7 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
Y(j, f) += res;
});
// Apply the Boundary Face Restriction transposed
bdr_face_restrict_lex->AddMultTranspose(faceBdrY, y);
bdr_face_restrict_lex->MultTranspose(faceBdrY, y);
}
}
}
+4 -4
View File
@@ -72,8 +72,8 @@ protected:
mutable Vector faceIntX, faceIntY;
mutable Vector faceBdrX, faceBdrY;
const Operator *elem_restrict; // Not owned
const FaceRestriction *int_face_restrict_lex; // Not owned
const FaceRestriction *bdr_face_restrict_lex; // Not owned
const Operator *int_face_restrict_lex; // Not owned
const Operator *bdr_face_restrict_lex; // Not owned
public:
PABilinearFormExtension(BilinearForm*);
@@ -143,8 +143,8 @@ protected:
mutable Vector faceIntX, faceIntY;
mutable Vector faceBdrX, faceBdrY;
const Operator *elem_restrict; // Not owned
const FaceRestriction *int_face_restrict_lex; // Not owned
const FaceRestriction *bdr_face_restrict_lex; // Not owned
const Operator *int_face_restrict_lex; // Not owned
const Operator *bdr_face_restrict_lex; // Not owned
public:
MFBilinearFormExtension(BilinearForm *form);
+2 -29
View File
@@ -175,11 +175,6 @@ void BilinearFormIntegrator::AssembleFaceVector(
elmat.Mult(elfun, elvect);
}
void TransposeIntegrator::SetIntRule(const IntegrationRule *ir)
{
IntRule = ir;
bfi->SetIntRule(ir);
}
void TransposeIntegrator::AssembleElementMatrix (
const FiniteElement &el, ElementTransformation &Trans, DenseMatrix &elmat)
@@ -207,12 +202,6 @@ void TransposeIntegrator::AssembleFaceMatrix (
elmat.Transpose (bfi_elmat);
}
void LumpedIntegrator::SetIntRule(const IntegrationRule *ir)
{
IntRule = ir;
bfi->SetIntRule(ir);
}
void LumpedIntegrator::AssembleElementMatrix (
const FiniteElement &el, ElementTransformation &Trans, DenseMatrix &elmat)
{
@@ -220,12 +209,6 @@ void LumpedIntegrator::AssembleElementMatrix (
elmat.Lump();
}
void InverseIntegrator::SetIntRule(const IntegrationRule *ir)
{
IntRule = ir;
integrator->SetIntRule(ir);
}
void InverseIntegrator::AssembleElementMatrix(
const FiniteElement &el, ElementTransformation &Trans, DenseMatrix &elmat)
{
@@ -233,15 +216,6 @@ void InverseIntegrator::AssembleElementMatrix(
elmat.Invert();
}
void SumIntegrator::SetIntRule(const IntegrationRule *ir)
{
IntRule = ir;
for (int i = 0; i < integrators.Size(); i++)
{
integrators[i]->SetIntRule(ir);
}
}
void SumIntegrator::AssembleElementMatrix(
const FiniteElement &el, ElementTransformation &Trans, DenseMatrix &elmat)
{
@@ -1777,16 +1751,15 @@ void DerivativeIntegrator::AssembleElementMatrix2 (
int dim = trial_fe.GetDim();
int trial_nd = trial_fe.GetDof();
int test_nd = test_fe.GetDof();
int spaceDim = Trans.GetSpaceDim();
int i, l;
double det;
elmat.SetSize (test_nd,trial_nd);
dshape.SetSize (trial_nd,dim);
dshapedxt.SetSize(trial_nd, spaceDim);
dshapedxt.SetSize(trial_nd,dim);
dshapedxi.SetSize(trial_nd);
invdfdx.SetSize(dim, spaceDim);
invdfdx.SetSize(dim);
shape.SetSize (test_nd);
const IntegrationRule *ir = IntRule;
+3 -15
View File
@@ -21,11 +21,7 @@ namespace mfem
// Local maximum size of dofs and quads in 1D
constexpr int HCURL_MAX_D1D = 5;
#ifdef MFEM_USE_HIP
constexpr int HCURL_MAX_Q1D = 5;
#else
constexpr int HCURL_MAX_Q1D = 6;
#endif
constexpr int HDIV_MAX_D1D = 5;
constexpr int HDIV_MAX_Q1D = 6;
@@ -261,8 +257,6 @@ public:
TransposeIntegrator (BilinearFormIntegrator *bfi_, int own_bfi_ = 1)
{ bfi = bfi_; own_bfi = own_bfi_; }
virtual void SetIntRule(const IntegrationRule *ir);
virtual void AssembleElementMatrix(const FiniteElement &el,
ElementTransformation &Trans,
DenseMatrix &elmat);
@@ -330,8 +324,6 @@ public:
LumpedIntegrator (BilinearFormIntegrator *bfi_, int own_bfi_ = 1)
{ bfi = bfi_; own_bfi = own_bfi_; }
virtual void SetIntRule(const IntegrationRule *ir);
virtual void AssembleElementMatrix(const FiniteElement &el,
ElementTransformation &Trans,
DenseMatrix &elmat);
@@ -350,8 +342,6 @@ public:
InverseIntegrator(BilinearFormIntegrator *integ, int own_integ = 1)
{ integrator = integ; own_integrator = own_integ; }
virtual void SetIntRule(const IntegrationRule *ir);
virtual void AssembleElementMatrix(const FiniteElement &el,
ElementTransformation &Trans,
DenseMatrix &elmat);
@@ -370,8 +360,6 @@ private:
public:
SumIntegrator(int own_integs = 1) { own_integrators = own_integs; }
virtual void SetIntRule(const IntegrationRule *ir);
void AddIntegrator(BilinearFormIntegrator *integ)
{ integrators.Append(integ); }
@@ -711,7 +699,7 @@ protected:
{
return "MixedScalarDerivativeIntegrator: "
"Trial and test spaces must both be scalar fields in 1D "
"and the trial space must implement CalcDShape.";
"and the trial space must implement CaldDShape.";
}
inline virtual void CalcTrialShape(const FiniteElement & trial_fe,
@@ -2936,11 +2924,11 @@ public:
- F. Bassi and S. Rebay. A high order discontinuous Galerkin method for
compressible turbulent flows. In B. Cockburn, G. E. Karniadakis, and
C.-W. Shu, editors, Discontinuous Galerkin Methods, pages 77-88. Springer
C.-W. Shu, editors, Discontinuous Galerkin Methods, pages 7788. Springer
Berlin Heidelberg, 2000.
- D. N. Arnold, F. Brezzi, B. Cockburn, and L. D. Marini. Unified analysis
of discontinuous Galerkin methods for elliptic problems. SIAM Journal on
Numerical Analysis, 39(5):1749-1779, 2002.
Numerical Analysis, 39(5):17491779, 2002.
*/
class DGDiffusionBR2Integrator : public BilinearFormIntegrator
{
+24 -24
View File
@@ -17,14 +17,14 @@ namespace mfem
{
template<int T_D1D = 0, int T_Q1D = 0>
void EAConvectionAssemble1D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
static void EAConvectionAssemble1D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -69,14 +69,14 @@ void EAConvectionAssemble1D(const int NE,
}
template<int T_D1D = 0, int T_Q1D = 0>
void EAConvectionAssemble2D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
static void EAConvectionAssemble2D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -146,14 +146,14 @@ void EAConvectionAssemble2D(const int NE,
}
template<int T_D1D = 0, int T_Q1D = 0>
void EAConvectionAssemble3D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
static void EAConvectionAssemble3D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
+22 -24
View File
@@ -21,13 +21,13 @@ namespace mfem
// PA Convection Integrator
// PA Convection Assemble 2D kernel
void PAConvectionSetup2D(const int NQ,
const int NE,
const Array<double> &w,
const Vector &j,
const Vector &vel,
const double alpha,
Vector &op)
static void PAConvectionSetup2D(const int NQ,
const int NE,
const Array<double> &w,
const Vector &j,
const Vector &vel,
const double alpha,
Vector &op)
{
constexpr int DIM = 2;
@@ -60,13 +60,13 @@ void PAConvectionSetup2D(const int NQ,
}
// PA Convection Assemble 3D kernel
void PAConvectionSetup3D(const int NQ,
const int NE,
const Array<double> &w,
const Vector &j,
const Vector &vel,
const double alpha,
Vector &op)
static void PAConvectionSetup3D(const int NQ,
const int NE,
const Array<double> &w,
const Vector &j,
const Vector &vel,
const double alpha,
Vector &op)
{
constexpr int DIM = 3;
constexpr int SDIM = DIM;
@@ -135,7 +135,7 @@ static void PAConvectionSetup(const int dim,
}
// PA Convection Apply 2D kernel
template<int T_D1D = 0, int T_Q1D = 0>
template<int T_D1D = 0, int T_Q1D = 0> static
void PAConvectionApply2D(const int ne,
const Array<double> &b,
const Array<double> &g,
@@ -254,7 +254,7 @@ void PAConvectionApply2D(const int ne,
}
// Optimized PA Convection Apply 2D kernel
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0> static
void SmemPAConvectionApply2D(const int ne,
const Array<double> &b,
const Array<double> &g,
@@ -382,7 +382,7 @@ void SmemPAConvectionApply2D(const int ne,
}
// PA Convection Apply 3D kernel
template<int T_D1D = 0, int T_Q1D = 0>
template<int T_D1D = 0, int T_Q1D = 0> static
void PAConvectionApply3D(const int ne,
const Array<double> &b,
const Array<double> &g,
@@ -563,7 +563,7 @@ void PAConvectionApply3D(const int ne,
}
// Optimized PA Convection Apply 3D kernel
template<int T_D1D = 0, int T_Q1D = 0>
template<int T_D1D = 0, int T_Q1D = 0> static
void SmemPAConvectionApply3D(const int ne,
const Array<double> &b,
const Array<double> &g,
@@ -768,8 +768,6 @@ void SmemPAConvectionApply3D(const int ne,
void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : pa_mt;
// Assumes tensor-product elements
Mesh *mesh = fes.GetMesh();
const FiniteElement &el = *fes.GetFE(0);
@@ -786,11 +784,11 @@ void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
const int nq = ir->GetNPoints();
dim = mesh->Dimension();
ne = fes.GetNE();
geom = mesh->GetGeometricFactors(*ir, GeometricFactors::JACOBIANS, mt);
geom = mesh->GetGeometricFactors(*ir, GeometricFactors::JACOBIANS);
maps = &el.GetDofToQuad(*ir, DofToQuad::TENSOR);
dofs1D = maps->ndof;
quad1D = maps->nqpt;
pa_data.SetSize(symmDims * nq * ne, mt);
pa_data.SetSize(symmDims * nq * ne, Device::GetMemoryType());
Vector vel;
if (VectorConstantCoefficient *cQ =
dynamic_cast<VectorConstantCoefficient*>(Q))
@@ -800,7 +798,7 @@ void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
else if (VectorGridFunctionCoefficient *vgfQ =
dynamic_cast<VectorGridFunctionCoefficient*>(Q))
{
vel.SetSize(dim * nq * ne, mt);
vel.SetSize(dim * nq * ne);
const GridFunction *gf = vgfQ->GetGridFunction();
const FiniteElementSpace &gf_fes = *gf->FESpace();
@@ -811,7 +809,7 @@ void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
ElementDofOrdering::NATIVE;
const Operator *R = gf_fes.GetElementRestriction(ordering);
Vector xe(R->Height(), mt);
Vector xe(R->Height(), Device::GetMemoryType());
xe.UseDevice(true);
R->Mult(*gf, xe);
+41 -41
View File
@@ -16,12 +16,12 @@
namespace mfem
{
void EADGTraceAssemble1DInt(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_int,
Vector &eadata_ext,
const bool add)
static void EADGTraceAssemble1DInt(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_int,
Vector &eadata_ext,
const bool add)
{
auto D = Reshape(padata.Read(), 2, 2, NF);
auto A_int = Reshape(eadata_int.ReadWrite(), 2, NF);
@@ -50,11 +50,11 @@ void EADGTraceAssemble1DInt(const int NF,
});
}
void EADGTraceAssemble1DBdr(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_bdr,
const bool add)
static void EADGTraceAssemble1DBdr(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_bdr,
const bool add)
{
auto D = Reshape(padata.Read(), 2, 2, NF);
auto A_bdr = Reshape(eadata_bdr.ReadWrite(), NF);
@@ -72,14 +72,14 @@ void EADGTraceAssemble1DBdr(const int NF,
}
template<int T_D1D = 0, int T_Q1D = 0>
void EADGTraceAssemble2DInt(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_int,
Vector &eadata_ext,
const bool add,
const int d1d = 0,
const int q1d = 0)
static void EADGTraceAssemble2DInt(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_int,
Vector &eadata_ext,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -128,13 +128,13 @@ void EADGTraceAssemble2DInt(const int NF,
}
template<int T_D1D = 0, int T_Q1D = 0>
void EADGTraceAssemble2DBdr(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_bdr,
const bool add,
const int d1d = 0,
const int q1d = 0)
static void EADGTraceAssemble2DBdr(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_bdr,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -170,14 +170,14 @@ void EADGTraceAssemble2DBdr(const int NF,
}
template<int T_D1D = 0, int T_Q1D = 0>
void EADGTraceAssemble3DInt(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_int,
Vector &eadata_ext,
const bool add,
const int d1d = 0,
const int q1d = 0)
static void EADGTraceAssemble3DInt(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_int,
Vector &eadata_ext,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -268,13 +268,13 @@ void EADGTraceAssemble3DInt(const int NF,
}
template<int T_D1D = 0, int T_Q1D = 0>
void EADGTraceAssemble3DBdr(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_bdr,
const bool add,
const int d1d = 0,
const int q1d = 0)
static void EADGTraceAssemble3DBdr(const int NF,
const Array<double> &basis,
const Vector &padata,
Vector &eadata_bdr,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
+26 -26
View File
@@ -19,16 +19,16 @@ using namespace std;
namespace mfem
{
// PA DG Trace Integrator
void PADGTraceSetup2D(const int Q1D,
const int NF,
const Array<double> &w,
const Vector &det,
const Vector &nor,
const Vector &rho,
const Vector &vel,
const double alpha,
const double beta,
Vector &op)
static void PADGTraceSetup2D(const int Q1D,
const int NF,
const Array<double> &w,
const Vector &det,
const Vector &nor,
const Vector &rho,
const Vector &vel,
const double alpha,
const double beta,
Vector &op)
{
const int VDIM = 2;
@@ -61,16 +61,16 @@ void PADGTraceSetup2D(const int Q1D,
});
}
void PADGTraceSetup3D(const int Q1D,
const int NF,
const Array<double> &w,
const Vector &det,
const Vector &nor,
const Vector &rho,
const Vector &vel,
const double alpha,
const double beta,
Vector &op)
static void PADGTraceSetup3D(const int Q1D,
const int NF,
const Array<double> &w,
const Vector &det,
const Vector &nor,
const Vector &rho,
const Vector &vel,
const double alpha,
const double beta,
Vector &op)
{
const int VDIM = 3;
@@ -301,7 +301,7 @@ void DGTraceIntegrator::AssemblePABoundaryFaces(const FiniteElementSpace& fes)
}
// PA DGTrace Apply 2D kernel for Gauss-Lobatto/Bernstein
template<int T_D1D = 0, int T_Q1D = 0>
template<int T_D1D = 0, int T_Q1D = 0> static
void PADGTraceApply2D(const int NF,
const Array<double> &b,
const Array<double> &bt,
@@ -392,7 +392,7 @@ void PADGTraceApply2D(const int NF,
}
// PA DGTrace Apply 3D kernel for Gauss-Lobatto/Bernstein
template<int T_D1D = 0, int T_Q1D = 0>
template<int T_D1D = 0, int T_Q1D = 0> static
void PADGTraceApply3D(const int NF,
const Array<double> &b,
const Array<double> &bt,
@@ -537,7 +537,7 @@ void PADGTraceApply3D(const int NF,
}
// Optimized PA DGTrace Apply 3D kernel for Gauss-Lobatto/Bernstein
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0> static
void SmemPADGTraceApply3D(const int NF,
const Array<double> &b,
const Array<double> &bt,
@@ -701,7 +701,7 @@ static void PADGTraceApply(const int dim,
}
// PA DGTrace Apply 2D kernel for Gauss-Lobatto/Bernstein
template<int T_D1D = 0, int T_Q1D = 0>
template<int T_D1D = 0, int T_Q1D = 0> static
void PADGTraceApplyTranspose2D(const int NF,
const Array<double> &b,
const Array<double> &bt,
@@ -797,7 +797,7 @@ void PADGTraceApplyTranspose2D(const int NF,
}
// PA DGTrace Apply Transpose 3D kernel for Gauss-Lobatto/Bernstein
template<int T_D1D = 0, int T_Q1D = 0>
template<int T_D1D = 0, int T_Q1D = 0> static
void PADGTraceApplyTranspose3D(const int NF,
const Array<double> &b,
const Array<double> &bt,
@@ -953,7 +953,7 @@ void PADGTraceApplyTranspose3D(const int NF,
}
// Optimized PA DGTrace Apply Transpose 3D kernel for Gauss-Lobatto/Bernstein
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0> static
void SmemPADGTraceApplyTranspose3D(const int NF,
const Array<double> &b,
const Array<double> &bt,
+24 -24
View File
@@ -17,14 +17,14 @@ namespace mfem
{
template<int T_D1D = 0, int T_Q1D = 0>
void EADiffusionAssemble1D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
static void EADiffusionAssemble1D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -68,14 +68,14 @@ void EADiffusionAssemble1D(const int NE,
}
template<int T_D1D = 0, int T_Q1D = 0>
void EADiffusionAssemble2D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
static void EADiffusionAssemble2D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -145,14 +145,14 @@ void EADiffusionAssemble2D(const int NE,
}
template<int T_D1D = 0, int T_Q1D = 0>
void EADiffusionAssemble3D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
static void EADiffusionAssemble3D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
+74 -75
View File
@@ -351,8 +351,6 @@ static void PADiffusionSetup(const int dim,
void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : pa_mt;
// Assuming the same element type
fespace = &fes;
Mesh *mesh = fes.GetMesh();
@@ -373,7 +371,7 @@ void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
const int nq = ir->GetNPoints();
dim = mesh->Dimension();
ne = fes.GetNE();
geom = mesh->GetGeometricFactors(*ir, GeometricFactors::JACOBIANS, mt);
geom = mesh->GetGeometricFactors(*ir, GeometricFactors::JACOBIANS);
const int sdim = mesh->SpaceDimension();
maps = &el.GetDofToQuad(*ir, DofToQuad::TENSOR);
dofs1D = maps->ndof;
@@ -490,20 +488,21 @@ void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
}
}
}
pa_data.SetSize((symmetric ? symmDims : MQfullDim) * nq * ne, mt);
pa_data.SetSize((symmetric ? symmDims : MQfullDim) * nq * ne,
Device::GetDeviceMemoryType());
PADiffusionSetup(dim, sdim, dofs1D, quad1D, coeffDim, ne, ir->GetWeights(),
geom->J, coeff, pa_data);
}
template<int T_D1D = 0, int T_Q1D = 0>
void PADiffusionDiagonal2D(const int NE,
const bool symmetric,
const Array<double> &b,
const Array<double> &g,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
static void PADiffusionDiagonal2D(const int NE,
const bool symmetric,
const Array<double> &b,
const Array<double> &g,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -562,14 +561,14 @@ void PADiffusionDiagonal2D(const int NE,
// Shared memory PA Diffusion Diagonal 2D kernel
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
void SmemPADiffusionDiagonal2D(const int NE,
const bool symmetric,
const Array<double> &b_,
const Array<double> &g_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
static void SmemPADiffusionDiagonal2D(const int NE,
const bool symmetric,
const Array<double> &b_,
const Array<double> &g_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -656,14 +655,14 @@ void SmemPADiffusionDiagonal2D(const int NE,
}
template<int T_D1D = 0, int T_Q1D = 0>
void PADiffusionDiagonal3D(const int NE,
const bool symmetric,
const Array<double> &b,
const Array<double> &g,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
static void PADiffusionDiagonal3D(const int NE,
const bool symmetric,
const Array<double> &b,
const Array<double> &g,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
{
constexpr int DIM = 3;
const int D1D = T_D1D ? T_D1D : d1d;
@@ -757,14 +756,14 @@ void PADiffusionDiagonal3D(const int NE,
// Shared memory PA Diffusion Diagonal 3D kernel
template<int T_D1D = 0, int T_Q1D = 0>
void SmemPADiffusionDiagonal3D(const int NE,
const bool symmetric,
const Array<double> &b_,
const Array<double> &g_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
static void SmemPADiffusionDiagonal3D(const int NE,
const bool symmetric,
const Array<double> &b_,
const Array<double> &g_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
constexpr int DIM = 3;
const int D1D = T_D1D ? T_D1D : d1d;
@@ -1034,17 +1033,17 @@ static void OccaPADiffusionApply3D(const int D1D,
// PA Diffusion Apply 2D kernel
template<int T_D1D = 0, int T_Q1D = 0>
void PADiffusionApply2D(const int NE,
const bool symmetric,
const Array<double> &b_,
const Array<double> &g_,
const Array<double> &bt_,
const Array<double> &gt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
static void PADiffusionApply2D(const int NE,
const bool symmetric,
const Array<double> &b_,
const Array<double> &g_,
const Array<double> &bt_,
const Array<double> &gt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -1156,15 +1155,15 @@ void PADiffusionApply2D(const int NE,
// Shared memory PA Diffusion Apply 2D kernel
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
void SmemPADiffusionApply2D(const int NE,
const bool symmetric,
const Array<double> &b_,
const Array<double> &g_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
static void SmemPADiffusionApply2D(const int NE,
const bool symmetric,
const Array<double> &b_,
const Array<double> &g_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -1314,16 +1313,16 @@ void SmemPADiffusionApply2D(const int NE,
// PA Diffusion Apply 3D kernel
template<int T_D1D = 0, int T_Q1D = 0>
void PADiffusionApply3D(const int NE,
const bool symmetric,
const Array<double> &b,
const Array<double> &g,
const Array<double> &bt,
const Array<double> &gt,
const Vector &d_,
const Vector &x_,
Vector &y_,
int d1d = 0, int q1d = 0)
static void PADiffusionApply3D(const int NE,
const bool symmetric,
const Array<double> &b,
const Array<double> &g,
const Array<double> &bt,
const Array<double> &gt,
const Vector &d_,
const Vector &x_,
Vector &y_,
int d1d = 0, int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -1533,15 +1532,15 @@ static MFEM_HOST_DEVICE inline double sign(const int q, const int d)
}
template<int T_D1D = 0, int T_Q1D = 0>
void SmemPADiffusionApply3D(const int NE,
const bool symmetric,
const Array<double> &b_,
const Array<double> &g_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
static void SmemPADiffusionApply3D(const int NE,
const bool symmetric,
const Array<double> &b_,
const Array<double> &g_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
+72 -72
View File
@@ -21,12 +21,12 @@ namespace mfem
// PA Divergence Integrator
// PA Divergence Assemble 2D kernel
void PADivergenceSetup2D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
const double COEFF,
Vector &op)
static void PADivergenceSetup2D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
const double COEFF,
Vector &op)
{
const int NQ = Q1D*Q1D;
auto W = w.Read();
@@ -51,12 +51,12 @@ void PADivergenceSetup2D(const int Q1D,
}
// PA Divergence Assemble 3D kernel
void PADivergenceSetup3D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
const double COEFF,
Vector &op)
static void PADivergenceSetup3D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
const double COEFF,
Vector &op)
{
const int NQ = Q1D*Q1D*Q1D;
auto W = w.Read();
@@ -160,16 +160,16 @@ void VectorDivergenceIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
// PA Divergence Apply 2D kernel
template<const int T_TR_D1D = 0, const int T_TE_D1D = 0, const int T_Q1D = 0>
void PADivergenceApply2D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Array<double> &bt,
const Vector &op_,
const Vector &x_,
Vector &y_,
const int tr_d1d = 0,
const int te_d1d = 0,
const int q1d = 0)
static void PADivergenceApply2D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Array<double> &bt,
const Vector &op_,
const Vector &x_,
Vector &y_,
const int tr_d1d = 0,
const int te_d1d = 0,
const int q1d = 0)
{
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
@@ -281,16 +281,16 @@ void PADivergenceApply2D(const int NE,
// Shared memory PA Divergence Apply 2D kernel
template<const int T_TR_D1D = 0, const int T_TE_D1D = 0, const int T_Q1D = 0,
const int T_NBZ = 0>
void SmemPADivergenceApply2D(const int NE,
const Array<double> &b_,
const Array<double> &g_,
const Array<double> &bt_,
const Vector &op_,
const Vector &x_,
Vector &y_,
const int tr_d1d = 0,
const int te_d1d = 0,
const int q1d = 0)
static void SmemPADivergenceApply2D(const int NE,
const Array<double> &b_,
const Array<double> &g_,
const Array<double> &bt_,
const Vector &op_,
const Vector &x_,
Vector &y_,
const int tr_d1d = 0,
const int te_d1d = 0,
const int q1d = 0)
{
// TODO
MFEM_ASSERT(false, "SHARED MEM NOT PROGRAMMED YET");
@@ -298,16 +298,16 @@ void SmemPADivergenceApply2D(const int NE,
// PA Divergence Apply 2D kernel transpose
template<const int T_TR_D1D = 0, const int T_TE_D1D = 0, const int T_Q1D = 0>
void PADivergenceApplyTranspose2D(const int NE,
const Array<double> &bt,
const Array<double> &gt,
const Array<double> &b,
const Vector &op_,
const Vector &x_,
Vector &y_,
const int tr_d1d = 0,
const int te_d1d = 0,
const int q1d = 0)
static void PADivergenceApplyTranspose2D(const int NE,
const Array<double> &bt,
const Array<double> &gt,
const Array<double> &b,
const Vector &op_,
const Vector &x_,
Vector &y_,
const int tr_d1d = 0,
const int te_d1d = 0,
const int q1d = 0)
{
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
@@ -414,16 +414,16 @@ void PADivergenceApplyTranspose2D(const int NE,
// PA Vector Divergence Apply 3D kernel
template<const int T_TR_D1D = 0, const int T_TE_D1D = 0, const int T_Q1D = 0>
void PADivergenceApply3D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Array<double> &bt,
const Vector &op_,
const Vector &x_,
Vector &y_,
int tr_d1d = 0,
int te_d1d = 0,
int q1d = 0)
static void PADivergenceApply3D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Array<double> &bt,
const Vector &op_,
const Vector &x_,
Vector &y_,
int tr_d1d = 0,
int te_d1d = 0,
int q1d = 0)
{
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
@@ -597,16 +597,16 @@ void PADivergenceApply3D(const int NE,
// PA Vector Divergence Apply 3D kernel
template<const int T_TR_D1D = 0, const int T_TE_D1D = 0, const int T_Q1D = 0>
void PADivergenceApplyTranspose3D(const int NE,
const Array<double> &bt,
const Array<double> &gt,
const Array<double> &b,
const Vector &op_,
const Vector &x_,
Vector &y_,
int tr_d1d = 0,
int te_d1d = 0,
int q1d = 0)
static void PADivergenceApplyTranspose3D(const int NE,
const Array<double> &bt,
const Array<double> &gt,
const Array<double> &b,
const Vector &op_,
const Vector &x_,
Vector &y_,
int tr_d1d = 0,
int te_d1d = 0,
int q1d = 0)
{
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
@@ -775,16 +775,16 @@ void PADivergenceApplyTranspose3D(const int NE,
// Shared memory PA Vector Divergence Apply 3D kernel
template<const int T_TR_D1D = 0, const int T_TE_D1D = 0, const int T_Q1D = 0>
void SmemPADivergenceApply3D(const int NE,
const Array<double> &b_,
const Array<double> &g_,
const Array<double> &bt_,
const Vector &q_,
const Vector &x_,
Vector &y_,
const int tr_d1d = 0,
const int te_d1d = 0,
const int q1d = 0)
static void SmemPADivergenceApply3D(const int NE,
const Array<double> &b_,
const Array<double> &g_,
const Array<double> &bt_,
const Vector &q_,
const Vector &x_,
Vector &y_,
const int tr_d1d = 0,
const int te_d1d = 0,
const int q1d = 0)
{
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
+54 -99
View File
@@ -25,7 +25,7 @@ namespace mfem
\b Q1D number of quadrature points in one dimension.
\b w quadrature weights.
\b j element Jacobians.
\b c coefficient at quadrature points.
\b COEFF coefficient at quadrature points.
The function is used precompute data needed at quadrature points during
the action. */
@@ -70,22 +70,18 @@ namespace mfem
the \b MFEM_SHARED keyword for local arrays. */
// PA Gradient Assemble 2D kernel
void PAGradientSetup2D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
const Vector &c,
Vector &op)
static void PAGradientSetup2D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
const double COEFF,
Vector &op)
{
const int NQ = Q1D*Q1D;
auto W = w.Read();
auto J = Reshape(j.Read(), NQ, 2, 2, NE);
auto y = Reshape(op.Write(), NQ, 2, 2, NE);
const bool const_c = c.Size() == 1;
const auto C = const_c ? Reshape(c.Read(), 1,1) :
Reshape(c.Read(), NQ, NE);
MFEM_FORALL(e, NE,
{
for (int q = 0; q < NQ; ++q)
@@ -95,38 +91,30 @@ void PAGradientSetup2D(const int Q1D,
const double J21 = J(q,1,0,e);
const double J22 = J(q,1,1,e);
// Store wq * Q * adj(J)
const double Co = const_c ? C(0,0) : C(q,e);
y(q,0,0,e) = W[q] * Co * J22; // 1,1
y(q,0,1,e) = W[q] * Co * -J12; // 1,2
y(q,1,0,e) = W[q] * Co * -J21; // 2,1
y(q,1,1,e) = W[q] * Co * J11; // 2,2
y(q,0,0,e) = W[q] * COEFF * J22; // 1,1
y(q,0,1,e) = W[q] * COEFF * -J12; // 1,2
y(q,1,0,e) = W[q] * COEFF * -J21; // 2,1
y(q,1,1,e) = W[q] * COEFF * J11; // 2,2
}
});
}
// PA Gradient Assemble 3D kernel
void PAGradientSetup3D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
const Vector &c,
Vector &op)
static void PAGradientSetup3D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
const double COEFF,
Vector &op)
{
const int NQ = Q1D*Q1D*Q1D;
auto W = w.Read();
auto J = Reshape(j.Read(), NQ, 3, 3, NE);
auto y = Reshape(op.Write(), NQ, 3, 3, NE);
const bool const_c = c.Size() == 1;
const auto C = const_c ? Reshape(c.Read(), 1,1) :
Reshape(c.Read(), NQ,NE);
MFEM_FORALL(e, NE,
{
for (int q = 0; q < NQ; ++q)
{
const double Co = const_c ? C(0,0) : C(q,e);
const double J11 = J(q,0,0,e);
const double J21 = J(q,1,0,e);
const double J31 = J(q,2,0,e);
@@ -136,7 +124,7 @@ void PAGradientSetup3D(const int Q1D,
const double J13 = J(q,0,2,e);
const double J23 = J(q,1,2,e);
const double J33 = J(q,2,2,e);
const double cw = W[q] * Co;
const double cw = W[q] * COEFF;
// adj(J)
const double A11 = (J22 * J33) - (J23 * J32);
const double A12 = (J32 * J13) - (J12 * J33);
@@ -168,7 +156,7 @@ static void PAGradientSetup(const int dim,
const int NE,
const Array<double> &W,
const Vector &J,
const Vector &COEFF,
const double COEFF,
Vector &op)
{
if (dim == 1) { MFEM_ABORT("dim==1 not supported in PAGradientSetup"); }
@@ -208,62 +196,29 @@ void GradientIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
MFEM_ASSERT(quad1D == test_maps->nqpt,
"PA requires test and trial space to have same number of quadrature points!");
pa_data.SetSize(nq * dimsToStore * ne, Device::GetMemoryType());
Vector coeff;
if (Q == nullptr)
double coeff = 1.0;
if (Q)
{
coeff.SetSize(1);
coeff(0) = 1.0;
ConstantCoefficient *cQ = dynamic_cast<ConstantCoefficient*>(Q);
MFEM_VERIFY(cQ != NULL, "only ConstantCoefficient is supported!");
coeff = cQ->constant;
}
else if (ConstantCoefficient* cQ = dynamic_cast<ConstantCoefficient*>(Q))
{
coeff.SetSize(1);
coeff(0) = cQ->constant;
}
else if (QuadratureFunctionCoefficient* cQ =
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
{
const QuadratureFunction &qFun = cQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == ne*nq,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
{
coeff.SetSize(nq * ne);
auto C = Reshape(coeff.HostWrite(), nq, ne);
for (int e = 0; e < ne; ++e)
{
ElementTransformation& T = *trial_fes.GetElementTransformation(e);
for (int q = 0; q < nq; ++q)
{
C(q,e) = Q->Eval(T, ir->IntPoint(q));
}
}
}
PAGradientSetup(dim, trial_dofs1D, test_dofs1D, quad1D,
ne, ir->GetWeights(), geom->J, coeff, pa_data);
}
// PA Gradient Apply 2D kernel
template<int T_TR_D1D = 0, int T_TE_D1D = 0, int T_Q1D = 0>
void PAGradientApply2D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Array<double> &bt,
const Vector &op_,
const Vector &x_,
Vector &y_,
const int tr_d1d = 0,
const int te_d1d = 0,
const int q1d = 0)
static void PAGradientApply2D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Array<double> &bt,
const Vector &op_,
const Vector &x_,
Vector &y_,
const int tr_d1d = 0,
const int te_d1d = 0,
const int q1d = 0)
{
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
@@ -384,16 +339,16 @@ static void PAGradientApplyTranspose2D(const int NE,
// PA Gradient Apply 3D kernel
template<const int T_TR_D1D = 0, const int T_TE_D1D = 0, const int T_Q1D = 0>
void PAGradientApply3D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Array<double> &bt,
const Vector &op_,
const Vector &x_,
Vector &y_,
int tr_d1d = 0,
int te_d1d = 0,
int q1d = 0)
static void PAGradientApply3D(const int NE,
const Array<double> &b,
const Array<double> &g,
const Array<double> &bt,
const Vector &op_,
const Vector &x_,
Vector &y_,
int tr_d1d = 0,
int te_d1d = 0,
int q1d = 0)
{
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
@@ -579,16 +534,16 @@ static void PAGradientApplyTranspose3D(const int NE,
// Shared memory PA Gradient Apply 3D kernel
template<const int T_TR_D1D = 0, const int T_TE_D1D = 0, const int T_Q1D = 0>
void SmemPAGradientApply3D(const int NE,
const Array<double> &b_,
const Array<double> &g_,
const Array<double> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int tr_d1d = 0,
const int te_d1d = 0,
const int q1d = 0)
static void SmemPAGradientApply3D(const int NE,
const Array<double> &b_,
const Array<double> &g_,
const Array<double> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int tr_d1d = 0,
const int te_d1d = 0,
const int q1d = 0)
{
const int TR_D1D = T_TR_D1D ? T_TR_D1D : tr_d1d;
const int TE_D1D = T_TE_D1D ? T_TE_D1D : te_d1d;
+194 -194
View File
@@ -791,12 +791,12 @@ void SmemPAHcurlMassApply3D(const int D1D,
}
// PA H(curl) curl-curl assemble 2D kernel
void PACurlCurlSetup2D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
Vector &coeff,
Vector &op)
static void PACurlCurlSetup2D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
Vector &coeff,
Vector &op)
{
const int NQ = Q1D*Q1D;
auto W = w.Read();
@@ -818,13 +818,13 @@ void PACurlCurlSetup2D(const int Q1D,
}
// PA H(curl) curl-curl assemble 3D kernel
void PACurlCurlSetup3D(const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &w,
const Vector &j,
Vector &coeff,
Vector &op)
static void PACurlCurlSetup3D(const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &w,
const Vector &j,
Vector &coeff,
Vector &op)
{
const int NQ = Q1D*Q1D*Q1D;
const bool symmetric = (coeffDim != 9);
@@ -1045,16 +1045,16 @@ void CurlCurlIntegrator::AssemblePA(const FiniteElementSpace &fes)
}
}
void PACurlCurlApply2D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &bo,
const Array<double> &bot,
const Array<double> &gc,
const Array<double> &gct,
const Vector &pa_data,
const Vector &x,
Vector &y)
static void PACurlCurlApply2D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &bo,
const Array<double> &bot,
const Array<double> &gc,
const Array<double> &gct,
const Vector &pa_data,
const Vector &x,
Vector &y)
{
constexpr static int VDIM = 2;
constexpr static int MAX_D1D = HCURL_MAX_D1D;
@@ -1166,19 +1166,19 @@ void PACurlCurlApply2D(const int D1D,
}
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
void PACurlCurlApply3D(const int D1D,
const int Q1D,
const bool symmetric,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &bot,
const Array<double> &bct,
const Array<double> &gc,
const Array<double> &gct,
const Vector &pa_data,
const Vector &x,
Vector &y)
static void PACurlCurlApply3D(const int D1D,
const int Q1D,
const bool symmetric,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &bot,
const Array<double> &bct,
const Array<double> &gc,
const Array<double> &gct,
const Vector &pa_data,
const Vector &x,
Vector &y)
{
MFEM_VERIFY(D1D <= MAX_D1D, "Error: D1D > MAX_D1D");
MFEM_VERIFY(Q1D <= MAX_Q1D, "Error: Q1D > MAX_Q1D");
@@ -1677,19 +1677,19 @@ void PACurlCurlApply3D(const int D1D,
}
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
void SmemPACurlCurlApply3D(const int D1D,
const int Q1D,
const bool symmetric,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &bot,
const Array<double> &bct,
const Array<double> &gc,
const Array<double> &gct,
const Vector &pa_data,
const Vector &x,
Vector &y)
static void SmemPACurlCurlApply3D(const int D1D,
const int Q1D,
const bool symmetric,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &bot,
const Array<double> &bct,
const Array<double> &gc,
const Array<double> &gct,
const Vector &pa_data,
const Vector &x,
Vector &y)
{
MFEM_VERIFY(D1D <= MAX_D1D, "Error: D1D > MAX_D1D");
MFEM_VERIFY(Q1D <= MAX_Q1D, "Error: Q1D > MAX_Q1D");
@@ -2032,13 +2032,13 @@ void CurlCurlIntegrator::AddMultPA(const Vector &x, Vector &y) const
}
}
void PACurlCurlAssembleDiagonal2D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &bo,
const Array<double> &gc,
const Vector &pa_data,
Vector &diag)
static void PACurlCurlAssembleDiagonal2D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &bo,
const Array<double> &gc,
const Vector &pa_data,
Vector &diag)
{
constexpr static int VDIM = 2;
constexpr static int MAX_Q1D = HCURL_MAX_Q1D;
@@ -2087,16 +2087,16 @@ void PACurlCurlAssembleDiagonal2D(const int D1D,
}
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
void PACurlCurlAssembleDiagonal3D(const int D1D,
const int Q1D,
const bool symmetric,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &go,
const Array<double> &gc,
const Vector &pa_data,
Vector &diag)
static void PACurlCurlAssembleDiagonal3D(const int D1D,
const int Q1D,
const bool symmetric,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &go,
const Array<double> &gc,
const Vector &pa_data,
Vector &diag)
{
constexpr static int VDIM = 3;
MFEM_VERIFY(D1D <= MAX_D1D, "Error: D1D > MAX_D1D");
@@ -2273,16 +2273,16 @@ void PACurlCurlAssembleDiagonal3D(const int D1D,
}
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
void SmemPACurlCurlAssembleDiagonal3D(const int D1D,
const int Q1D,
const bool symmetric,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &go,
const Array<double> &gc,
const Vector &pa_data,
Vector &diag)
static void SmemPACurlCurlAssembleDiagonal3D(const int D1D,
const int Q1D,
const bool symmetric,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &go,
const Array<double> &gc,
const Vector &pa_data,
Vector &diag)
{
MFEM_VERIFY(D1D <= MAX_D1D, "Error: D1D > MAX_D1D");
MFEM_VERIFY(Q1D <= MAX_Q1D, "Error: Q1D > MAX_Q1D");
@@ -2955,18 +2955,18 @@ void MixedVectorCurlIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
// Apply to x corresponding to DOF's in H(curl) (trial), whose curl is
// integrated against H(curl) test functions corresponding to y.
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
void PAHcurlL2Apply3D(const int D1D,
const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &bot,
const Array<double> &bct,
const Array<double> &gc,
const Vector &pa_data,
const Vector &x,
Vector &y)
static void PAHcurlL2Apply3D(const int D1D,
const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &bot,
const Array<double> &bct,
const Array<double> &gc,
const Vector &pa_data,
const Vector &x,
Vector &y)
{
MFEM_VERIFY(D1D <= MAX_D1D, "Error: D1D > MAX_D1D");
MFEM_VERIFY(Q1D <= MAX_Q1D, "Error: Q1D > MAX_Q1D");
@@ -3297,16 +3297,16 @@ void PAHcurlL2Apply3D(const int D1D,
// Apply to x corresponding to DOF's in H(curl) (trial), whose curl is
// integrated against H(curl) test functions corresponding to y.
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
void SmemPAHcurlL2Apply3D(const int D1D,
const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &gc,
const Vector &pa_data,
const Vector &x,
Vector &y)
static void SmemPAHcurlL2Apply3D(const int D1D,
const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &gc,
const Vector &pa_data,
const Vector &x,
Vector &y)
{
MFEM_VERIFY(D1D <= MAX_D1D, "Error: D1D > MAX_D1D");
MFEM_VERIFY(Q1D <= MAX_Q1D, "Error: Q1D > MAX_Q1D");
@@ -3585,18 +3585,18 @@ void SmemPAHcurlL2Apply3D(const int D1D,
// Apply to x corresponding to DOF's in H(curl) (trial), whose curl is
// integrated against H(div) test functions corresponding to y.
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
void PAHcurlHdivApply3D(const int D1D,
const int D1Dtest,
const int Q1D,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &bot,
const Array<double> &bct,
const Array<double> &gc,
const Vector &pa_data,
const Vector &x,
Vector &y)
static void PAHcurlHdivApply3D(const int D1D,
const int D1Dtest,
const int Q1D,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &bot,
const Array<double> &bct,
const Array<double> &gc,
const Vector &pa_data,
const Vector &x,
Vector &y)
{
MFEM_VERIFY(D1D <= MAX_D1D, "Error: D1D > MAX_D1D");
MFEM_VERIFY(Q1D <= MAX_Q1D, "Error: Q1D > MAX_Q1D");
@@ -4071,18 +4071,18 @@ void MixedVectorWeakCurlIntegrator::AssemblePA(const FiniteElementSpace
// Apply to x corresponding to DOF's in H(curl) (trial), integrated against curl
// of H(curl) test functions corresponding to y.
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
void PAHcurlL2Apply3DTranspose(const int D1D,
const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &bot,
const Array<double> &bct,
const Array<double> &gct,
const Vector &pa_data,
const Vector &x,
Vector &y)
static void PAHcurlL2Apply3DTranspose(const int D1D,
const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &bot,
const Array<double> &bct,
const Array<double> &gct,
const Vector &pa_data,
const Vector &x,
Vector &y)
{
// See PAHcurlL2Apply3D for comments.
@@ -4413,16 +4413,16 @@ void PAHcurlL2Apply3DTranspose(const int D1D,
}
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
void SmemPAHcurlL2Apply3DTranspose(const int D1D,
const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &gc,
const Vector &pa_data,
const Vector &x,
Vector &y)
static void SmemPAHcurlL2Apply3DTranspose(const int D1D,
const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &bo,
const Array<double> &bc,
const Array<double> &gc,
const Vector &pa_data,
const Vector &x,
Vector &y)
{
MFEM_VERIFY(D1D <= MAX_D1D, "Error: D1D > MAX_D1D");
MFEM_VERIFY(Q1D <= MAX_Q1D, "Error: Q1D > MAX_Q1D");
@@ -4675,13 +4675,13 @@ void MixedVectorWeakCurlIntegrator::AddMultPA(const Vector &x, Vector &y) const
// Apply to x corresponding to DOFs in H^1 (domain) the (topological) gradient
// to get a dof in H(curl) (range). You can think of the range as the "test" space
// and the domain as the "trial" space, but there's no integration.
void PAHcurlApplyGradient2D(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &B_,
const Array<double> &G_,
const Vector &x_,
Vector &y_)
static void PAHcurlApplyGradient2D(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &B_,
const Array<double> &G_,
const Vector &x_,
Vector &y_)
{
auto B = Reshape(B_.Read(), c_dofs1D, c_dofs1D);
auto G = Reshape(G_.Read(), o_dofs1D, c_dofs1D);
@@ -4753,12 +4753,12 @@ void PAHcurlApplyGradient2D(const int c_dofs1D,
}
// Specialization of PAHcurlApplyGradient2D to the case where B is identity
void PAHcurlApplyGradient2DBId(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &G_,
const Vector &x_,
Vector &y_)
static void PAHcurlApplyGradient2DBId(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &G_,
const Vector &x_,
Vector &y_)
{
auto G = Reshape(G_.Read(), o_dofs1D, c_dofs1D);
@@ -4822,7 +4822,7 @@ void PAHcurlApplyGradient2DBId(const int c_dofs1D,
});
}
void PAHcurlApplyGradientTranspose2D(
static void PAHcurlApplyGradientTranspose2D(
const int c_dofs1D, const int o_dofs1D, const int NE,
const Array<double> &B_, const Array<double> &G_,
const Vector &x_, Vector &y_)
@@ -4898,7 +4898,7 @@ void PAHcurlApplyGradientTranspose2D(
// Specialization of PAHcurlApplyGradientTranspose2D to the case where
// B is identity
void PAHcurlApplyGradientTranspose2DBId(
static void PAHcurlApplyGradientTranspose2DBId(
const int c_dofs1D, const int o_dofs1D, const int NE,
const Array<double> &G_,
const Vector &x_, Vector &y_)
@@ -4965,13 +4965,13 @@ void PAHcurlApplyGradientTranspose2DBId(
});
}
void PAHcurlApplyGradient3D(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &B_,
const Array<double> &G_,
const Vector &x_,
Vector &y_)
static void PAHcurlApplyGradient3D(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &B_,
const Array<double> &G_,
const Vector &x_,
Vector &y_)
{
auto B = Reshape(B_.Read(), c_dofs1D, c_dofs1D);
auto G = Reshape(G_.Read(), o_dofs1D, c_dofs1D);
@@ -5154,12 +5154,12 @@ void PAHcurlApplyGradient3D(const int c_dofs1D,
}
// Specialization of PAHcurlApplyGradient3D to the case where
void PAHcurlApplyGradient3DBId(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &G_,
const Vector &x_,
Vector &y_)
static void PAHcurlApplyGradient3DBId(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &G_,
const Vector &x_,
Vector &y_)
{
auto G = Reshape(G_.Read(), o_dofs1D, c_dofs1D);
@@ -5322,7 +5322,7 @@ void PAHcurlApplyGradient3DBId(const int c_dofs1D,
});
}
void PAHcurlApplyGradientTranspose3D(
static void PAHcurlApplyGradientTranspose3D(
const int c_dofs1D, const int o_dofs1D, const int NE,
const Array<double> &B_, const Array<double> &G_,
const Vector &x_, Vector &y_)
@@ -5507,7 +5507,7 @@ void PAHcurlApplyGradientTranspose3D(
}
// Specialization of PAHcurlApplyGradientTranspose3D to the case where
void PAHcurlApplyGradientTranspose3DBId(
static void PAHcurlApplyGradientTranspose3DBId(
const int c_dofs1D, const int o_dofs1D, const int NE,
const Array<double> &G_,
const Vector &x_, Vector &y_)
@@ -5789,14 +5789,14 @@ void GradientInterpolator::AddMultTransposePA(const Vector &x, Vector &y) const
}
}
void PAHcurlVecH1IdentityApply3D(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &Bclosed,
const Array<double> &Bopen,
const Vector &pa_data,
const Vector &x_,
Vector &y_)
static void PAHcurlVecH1IdentityApply3D(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &Bclosed,
const Array<double> &Bopen,
const Vector &pa_data,
const Vector &x_,
Vector &y_)
{
auto Bc = Reshape(Bclosed.Read(), c_dofs1D, c_dofs1D);
auto Bo = Reshape(Bopen.Read(), o_dofs1D, c_dofs1D);
@@ -6002,14 +6002,14 @@ void PAHcurlVecH1IdentityApply3D(const int c_dofs1D,
});
}
void PAHcurlVecH1IdentityApplyTranspose3D(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &Bclosed,
const Array<double> &Bopen,
const Vector &pa_data,
const Vector &x_,
Vector &y_)
static void PAHcurlVecH1IdentityApplyTranspose3D(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &Bclosed,
const Array<double> &Bopen,
const Vector &pa_data,
const Vector &x_,
Vector &y_)
{
auto Bc = Reshape(Bclosed.Read(), c_dofs1D, c_dofs1D);
auto Bo = Reshape(Bopen.Read(), o_dofs1D, c_dofs1D);
@@ -6228,14 +6228,14 @@ void PAHcurlVecH1IdentityApplyTranspose3D(const int c_dofs1D,
});
}
void PAHcurlVecH1IdentityApply2D(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &Bclosed,
const Array<double> &Bopen,
const Vector &pa_data,
const Vector &x_,
Vector &y_)
static void PAHcurlVecH1IdentityApply2D(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &Bclosed,
const Array<double> &Bopen,
const Vector &pa_data,
const Vector &x_,
Vector &y_)
{
auto Bc = Reshape(Bclosed.Read(), c_dofs1D, c_dofs1D);
auto Bo = Reshape(Bopen.Read(), o_dofs1D, c_dofs1D);
@@ -6327,14 +6327,14 @@ void PAHcurlVecH1IdentityApply2D(const int c_dofs1D,
});
}
void PAHcurlVecH1IdentityApplyTranspose2D(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &Bclosed,
const Array<double> &Bopen,
const Vector &pa_data,
const Vector &x_,
Vector &y_)
static void PAHcurlVecH1IdentityApplyTranspose2D(const int c_dofs1D,
const int o_dofs1D,
const int NE,
const Array<double> &Bclosed,
const Array<double> &Bopen,
const Vector &pa_data,
const Vector &x_,
Vector &y_)
{
auto Bc = Reshape(Bclosed.Read(), c_dofs1D, c_dofs1D);
auto Bo = Reshape(Bopen.Read(), o_dofs1D, c_dofs1D);
+116 -116
View File
@@ -539,12 +539,12 @@ void PAHdivMassApply3D(const int D1D,
// PA H(div) div-div assemble 2D kernel
// NOTE: this is identical to PACurlCurlSetup3D
void PADivDivSetup2D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
Vector &coeff_,
Vector &op)
static void PADivDivSetup2D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
Vector &coeff_,
Vector &op)
{
const int NQ = Q1D*Q1D;
auto W = w.Read();
@@ -565,12 +565,12 @@ void PADivDivSetup2D(const int Q1D,
});
}
void PADivDivSetup3D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
Vector &coeff_,
Vector &op)
static void PADivDivSetup3D(const int Q1D,
const int NE,
const Array<double> &w,
const Vector &j,
Vector &coeff_,
Vector &op)
{
const int NQ = Q1D*Q1D*Q1D;
auto W = w.Read();
@@ -599,16 +599,16 @@ void PADivDivSetup3D(const int Q1D,
});
}
void PADivDivApply2D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Gc_,
const Array<double> &Bot_,
const Array<double> &Gct_,
const Vector &op_,
const Vector &x_,
Vector &y_)
static void PADivDivApply2D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Gc_,
const Array<double> &Bot_,
const Array<double> &Gct_,
const Vector &op_,
const Vector &x_,
Vector &y_)
{
constexpr static int VDIM = 2;
constexpr static int MAX_D1D = HDIV_MAX_D1D;
@@ -718,16 +718,16 @@ void PADivDivApply2D(const int D1D,
}); // end of element loop
}
void PADivDivApply3D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Gc_,
const Array<double> &Bot_,
const Array<double> &Gct_,
const Vector &op_,
const Vector &x_,
Vector &y_)
static void PADivDivApply3D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Gc_,
const Array<double> &Bot_,
const Array<double> &Gct_,
const Vector &op_,
const Vector &x_,
Vector &y_)
{
MFEM_VERIFY(D1D <= HDIV_MAX_D1D, "Error: D1D > HDIV_MAX_D1D");
MFEM_VERIFY(Q1D <= HDIV_MAX_Q1D, "Error: Q1D > HDIV_MAX_Q1D");
@@ -967,13 +967,13 @@ void DivDivIntegrator::AddMultPA(const Vector &x, Vector &y) const
}
}
void PADivDivAssembleDiagonal2D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Gc_,
const Vector &op_,
Vector &diag_)
static void PADivDivAssembleDiagonal2D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Gc_,
const Vector &op_,
Vector &diag_)
{
constexpr static int VDIM = 2;
constexpr static int MAX_Q1D = HDIV_MAX_Q1D;
@@ -1023,13 +1023,13 @@ void PADivDivAssembleDiagonal2D(const int D1D,
});
}
void PADivDivAssembleDiagonal3D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Gc_,
const Vector &op_,
Vector &diag_)
static void PADivDivAssembleDiagonal3D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Gc_,
const Vector &op_,
Vector &diag_)
{
MFEM_VERIFY(D1D <= HDIV_MAX_D1D, "Error: D1D > HDIV_MAX_D1D");
MFEM_VERIFY(Q1D <= HDIV_MAX_Q1D, "Error: Q1D > HDIV_MAX_Q1D");
@@ -1104,11 +1104,11 @@ void DivDivIntegrator::AssembleDiagonalPA(Vector& diag)
}
// PA H(div)-L2 (div u, p) assemble 2D kernel
void PADivL2Setup2D(const int Q1D,
const int NE,
const Array<double> &w,
Vector &coeff_,
Vector &op)
static void PADivL2Setup2D(const int Q1D,
const int NE,
const Array<double> &w,
Vector &coeff_,
Vector &op)
{
const int NQ = Q1D*Q1D;
auto W = w.Read();
@@ -1123,11 +1123,11 @@ void PADivL2Setup2D(const int Q1D,
});
}
void PADivL2Setup3D(const int Q1D,
const int NE,
const Array<double> &w,
Vector &coeff_,
Vector &op)
static void PADivL2Setup3D(const int Q1D,
const int NE,
const Array<double> &w,
Vector &coeff_,
Vector &op)
{
const int NQ = Q1D*Q1D*Q1D;
auto W = w.Read();
@@ -1225,16 +1225,16 @@ VectorFEDivergenceIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
// Apply to x corresponding to DOF's in H(div) (trial), whose divergence is
// integrated against L_2 test functions corresponding to y.
void PAHdivL2Apply3D(const int D1D,
const int Q1D,
const int L2D1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Gc_,
const Array<double> &L2Bot_,
const Vector &op_,
const Vector &x_,
Vector &y_)
static void PAHdivL2Apply3D(const int D1D,
const int Q1D,
const int L2D1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Gc_,
const Array<double> &L2Bot_,
const Vector &op_,
const Vector &x_,
Vector &y_)
{
MFEM_VERIFY(D1D <= HDIV_MAX_D1D, "Error: D1D > HDIV_MAX_D1D");
MFEM_VERIFY(Q1D <= HDIV_MAX_Q1D, "Error: Q1D > HDIV_MAX_Q1D");
@@ -1388,16 +1388,16 @@ void PAHdivL2Apply3D(const int D1D,
// Apply to x corresponding to DOF's in H(div) (trial), whose divergence is
// integrated against L_2 test functions corresponding to y.
void PAHdivL2Apply2D(const int D1D,
const int Q1D,
const int L2D1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Gc_,
const Array<double> &L2Bot_,
const Vector &op_,
const Vector &x_,
Vector &y_)
static void PAHdivL2Apply2D(const int D1D,
const int Q1D,
const int L2D1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Gc_,
const Array<double> &L2Bot_,
const Vector &op_,
const Vector &x_,
Vector &y_)
{
constexpr static int VDIM = 2;
constexpr static int MAX_D1D = HDIV_MAX_D1D;
@@ -1494,16 +1494,16 @@ void PAHdivL2Apply2D(const int D1D,
}); // end of element loop
}
void PAHdivL2ApplyTranspose3D(const int D1D,
const int Q1D,
const int L2D1D,
const int NE,
const Array<double> &L2Bo_,
const Array<double> &Gct_,
const Array<double> &Bot_,
const Vector &op_,
const Vector &x_,
Vector &y_)
static void PAHdivL2ApplyTranspose3D(const int D1D,
const int Q1D,
const int L2D1D,
const int NE,
const Array<double> &L2Bo_,
const Array<double> &Gct_,
const Array<double> &Bot_,
const Vector &op_,
const Vector &x_,
Vector &y_)
{
MFEM_VERIFY(D1D <= HDIV_MAX_D1D, "Error: D1D > HDIV_MAX_D1D");
MFEM_VERIFY(Q1D <= HDIV_MAX_Q1D, "Error: Q1D > HDIV_MAX_Q1D");
@@ -1656,16 +1656,16 @@ void PAHdivL2ApplyTranspose3D(const int D1D,
}); // end of element loop
}
void PAHdivL2ApplyTranspose2D(const int D1D,
const int Q1D,
const int L2D1D,
const int NE,
const Array<double> &L2Bo_,
const Array<double> &Gct_,
const Array<double> &Bot_,
const Vector &op_,
const Vector &x_,
Vector &y_)
static void PAHdivL2ApplyTranspose2D(const int D1D,
const int Q1D,
const int L2D1D,
const int NE,
const Array<double> &L2Bo_,
const Array<double> &Gct_,
const Array<double> &Bot_,
const Vector &op_,
const Vector &x_,
Vector &y_)
{
constexpr static int VDIM = 2;
constexpr static int MAX_D1D = HDIV_MAX_D1D;
@@ -1791,16 +1791,16 @@ void VectorFEDivergenceIntegrator::AddMultTransposePA(const Vector &x,
}
}
void PAHdivL2AssembleDiagonal_ADAt_3D(const int D1D,
const int Q1D,
const int L2D1D,
const int NE,
const Array<double> &L2Bo_,
const Array<double> &Gct_,
const Array<double> &Bot_,
const Vector &op_,
const Vector &D_,
Vector &diag_)
static void PAHdivL2AssembleDiagonal_ADAt_3D(const int D1D,
const int Q1D,
const int L2D1D,
const int NE,
const Array<double> &L2Bo_,
const Array<double> &Gct_,
const Array<double> &Bot_,
const Vector &op_,
const Vector &D_,
Vector &diag_)
{
MFEM_VERIFY(D1D <= HDIV_MAX_D1D, "Error: D1D > HDIV_MAX_D1D");
MFEM_VERIFY(Q1D <= HDIV_MAX_Q1D, "Error: Q1D > HDIV_MAX_Q1D");
@@ -1916,16 +1916,16 @@ void PAHdivL2AssembleDiagonal_ADAt_3D(const int D1D,
}); // end of element loop
}
void PAHdivL2AssembleDiagonal_ADAt_2D(const int D1D,
const int Q1D,
const int L2D1D,
const int NE,
const Array<double> &L2Bo_,
const Array<double> &Gct_,
const Array<double> &Bot_,
const Vector &op_,
const Vector &D_,
Vector &diag_)
static void PAHdivL2AssembleDiagonal_ADAt_2D(const int D1D,
const int Q1D,
const int L2D1D,
const int NE,
const Array<double> &L2Bo_,
const Array<double> &Gct_,
const Array<double> &Bot_,
const Vector &op_,
const Vector &D_,
Vector &diag_)
{
constexpr static int VDIM = 2;
+21 -21
View File
@@ -17,13 +17,13 @@ namespace mfem
{
template<int T_D1D = 0, int T_Q1D = 0>
void EAMassAssemble1D(const int NE,
const Array<double> &basis,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
static void EAMassAssemble1D(const int NE,
const Array<double> &basis,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -67,13 +67,13 @@ void EAMassAssemble1D(const int NE,
}
template<int T_D1D = 0, int T_Q1D = 0>
void EAMassAssemble2D(const int NE,
const Array<double> &basis,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
static void EAMassAssemble2D(const int NE,
const Array<double> &basis,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -139,13 +139,13 @@ void EAMassAssemble2D(const int NE,
}
template<int T_D1D = 0, int T_Q1D = 0>
void EAMassAssemble3D(const int NE,
const Array<double> &basis,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
static void EAMassAssemble3D(const int NE,
const Array<double> &basis,
const Vector &padata,
Vector &eadata,
const bool add,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
+58 -61
View File
@@ -25,9 +25,6 @@ namespace mfem
void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : pa_mt;
// Assuming the same element type
fespace = &fes;
Mesh *mesh = fes.GetMesh();
@@ -45,11 +42,11 @@ void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
ne = fes.GetMesh()->GetNE();
nq = ir->GetNPoints();
geom = mesh->GetGeometricFactors(*ir, GeometricFactors::COORDINATES |
GeometricFactors::JACOBIANS, mt);
GeometricFactors::JACOBIANS);
maps = &el.GetDofToQuad(*ir, DofToQuad::TENSOR);
dofs1D = maps->ndof;
quad1D = maps->nqpt;
pa_data.SetSize(ne*nq, mt);
pa_data.SetSize(ne*nq, Device::GetDeviceMemoryType());
Vector coeff;
if (Q == nullptr)
{
@@ -155,12 +152,12 @@ void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
}
template<int T_D1D = 0, int T_Q1D = 0>
void PAMassAssembleDiagonal2D(const int NE,
const Array<double> &b,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
static void PAMassAssembleDiagonal2D(const int NE,
const Array<double> &b,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -201,12 +198,12 @@ void PAMassAssembleDiagonal2D(const int NE,
}
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
void SmemPAMassAssembleDiagonal2D(const int NE,
const Array<double> &b_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
static void SmemPAMassAssembleDiagonal2D(const int NE,
const Array<double> &b_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -267,12 +264,12 @@ void SmemPAMassAssembleDiagonal2D(const int NE,
}
template<int T_D1D = 0, int T_Q1D = 0>
void PAMassAssembleDiagonal3D(const int NE,
const Array<double> &b,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
static void PAMassAssembleDiagonal3D(const int NE,
const Array<double> &b,
const Vector &d,
Vector &y,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -336,12 +333,12 @@ void PAMassAssembleDiagonal3D(const int NE,
}
template<int T_D1D = 0, int T_Q1D = 0>
void SmemPAMassAssembleDiagonal3D(const int NE,
const Array<double> &b_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
static void SmemPAMassAssembleDiagonal3D(const int NE,
const Array<double> &b_,
const Vector &d_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -569,14 +566,14 @@ static void OccaPAMassApply3D(const int D1D,
#endif // MFEM_USE_OCCA
template<int T_D1D = 0, int T_Q1D = 0>
void PAMassApply2D(const int NE,
const Array<double> &b_,
const Array<double> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
static void PAMassApply2D(const int NE,
const Array<double> &b_,
const Array<double> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -661,14 +658,14 @@ void PAMassApply2D(const int NE,
}
template<int T_D1D = 0, int T_Q1D = 0, int T_NBZ = 0>
void SmemPAMassApply2D(const int NE,
const Array<double> &b_,
const Array<double> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
static void SmemPAMassApply2D(const int NE,
const Array<double> &b_,
const Array<double> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
MFEM_CONTRACT_VAR(bt_);
const int D1D = T_D1D ? T_D1D : d1d;
@@ -784,14 +781,14 @@ void SmemPAMassApply2D(const int NE,
}
template<int T_D1D = 0, int T_Q1D = 0>
void PAMassApply3D(const int NE,
const Array<double> &b_,
const Array<double> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
static void PAMassApply3D(const int NE,
const Array<double> &b_,
const Array<double> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
@@ -925,14 +922,14 @@ void PAMassApply3D(const int NE,
}
template<int T_D1D = 0, int T_Q1D = 0>
void SmemPAMassApply3D(const int NE,
const Array<double> &b_,
const Array<double> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
static void SmemPAMassApply3D(const int NE,
const Array<double> &b_,
const Array<double> &bt_,
const Vector &d_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
MFEM_CONTRACT_VAR(bt_);
const int D1D = T_D1D ? T_D1D : d1d;

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