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14d6a521a8 |
@@ -33,6 +33,7 @@ env:
|
||||
HYPRE_ARCHIVE: v2.19.0.tar.gz
|
||||
HYPRE_TOP_DIR: hypre-2.19.0
|
||||
METIS_ARCHIVE: metis-4.0.3.tar.gz
|
||||
METIS_ARCHIVE_MAC: metis-4.0.3-mac.tgz
|
||||
METIS_TOP_DIR: metis-4.0.3
|
||||
MFEM_TOP_DIR: mfem
|
||||
|
||||
@@ -52,6 +53,7 @@ jobs:
|
||||
mpi: [seq, par]
|
||||
build-system: [make, cmake]
|
||||
hypre-target: [int32]
|
||||
precision: [fp64]
|
||||
exclude:
|
||||
- os: ubuntu-latest
|
||||
build-system: cmake
|
||||
@@ -75,6 +77,8 @@ jobs:
|
||||
- os: ubuntu-latest
|
||||
target: dbg
|
||||
config-opts: 'CPPFLAGS+=-Og'
|
||||
- os: macos-latest
|
||||
codecov: NO
|
||||
- os: windows-latest
|
||||
codecov: NO
|
||||
- os: windows-latest
|
||||
@@ -87,6 +91,7 @@ jobs:
|
||||
mpi: par
|
||||
build-system: cmake
|
||||
hypre-target: int32
|
||||
precision: fp64
|
||||
# This option can be set to pass additional configuration options to
|
||||
# the MFEM configuration command.
|
||||
# config-opts: '-DCMAKE_VERBOSE_MAKEFILE=ON'
|
||||
@@ -96,7 +101,15 @@ jobs:
|
||||
mpi: par
|
||||
build-system: make
|
||||
hypre-target: int64
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
precision: fp64
|
||||
- os: ubuntu-latest
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: make
|
||||
hypre-target: int32
|
||||
precision: fp32
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}
|
||||
|
||||
runs-on: ${{ matrix.os }}
|
||||
|
||||
@@ -126,6 +139,17 @@ jobs:
|
||||
# Fetch the complete history for codecov to access commits ID
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Xcode version setup (MacOS)
|
||||
if: matrix.os == 'macos-latest'
|
||||
run: |
|
||||
XCODE_PATH="/Applications/Xcode_15.3.app"
|
||||
echo "> sudo xcode-select -s ${XCODE_PATH}"
|
||||
sudo xcode-select -s ${XCODE_PATH}
|
||||
echo "> g++ -v"
|
||||
g++ -v
|
||||
echo "> clang++ -v"
|
||||
clang++ -v
|
||||
|
||||
# Only get MPI if defined for the job.
|
||||
# TODO: It would be nice to have only one step, e.g. with a dedicated
|
||||
# action, but I (@adrienbernede) don't see how at the moment.
|
||||
@@ -169,25 +193,27 @@ jobs:
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-v2.5
|
||||
|
||||
- name: get hypre
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: ${{ matrix.hypre-target }}
|
||||
build-system: make
|
||||
precision: ${{ matrix.precision }}
|
||||
|
||||
- name: get hypre (Windows)
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: ${{ matrix.hypre-target }}
|
||||
build-system: cmake
|
||||
precision: ${{ matrix.precision }}
|
||||
|
||||
# Get Metis through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
@@ -197,13 +223,13 @@ jobs:
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
|
||||
|
||||
- name: install metis
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
uses: mfem/github-actions/build-metis@v2.5
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
archive: ${{ matrix.os != 'macos-latest' && env.METIS_ARCHIVE || env.METIS_ARCHIVE_MAC }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
- name: cache vcpkg (Windows)
|
||||
@@ -228,7 +254,7 @@ jobs:
|
||||
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
uses: mfem/github-actions/build-mfem@v2.5
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
with:
|
||||
@@ -240,6 +266,7 @@ jobs:
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: ${{ env.MFEM_TOP_DIR }}
|
||||
precision: ${{ matrix.precision }}
|
||||
config-options: ${{ matrix.config-opts }}
|
||||
library-only: ${{ matrix.target == 'dbg' && matrix.os != 'ubuntu-latest' }}
|
||||
|
||||
@@ -282,7 +309,7 @@ jobs:
|
||||
# Code coverage (process and upload reports)
|
||||
- name: codecov
|
||||
if: matrix.codecov == 'YES'
|
||||
uses: mfem/github-actions/upload-coverage@v2.4
|
||||
uses: mfem/github-actions/upload-coverage@v2.5
|
||||
with:
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
project_dir: ${{ env.MFEM_TOP_DIR }}
|
||||
|
||||
@@ -53,11 +53,11 @@ jobs:
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.2
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.5
|
||||
|
||||
- name: Get Hypre
|
||||
if: steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -68,18 +68,18 @@ jobs:
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
|
||||
|
||||
- name: Install Metis
|
||||
if: steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
uses: mfem/github-actions/build-metis@v2.5
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build-mfem
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
uses: mfem/github-actions/build-mfem@v2.5
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
|
||||
@@ -44,7 +44,7 @@ jobs:
|
||||
path: mfem
|
||||
|
||||
- name: MFEM Build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
uses: mfem/github-actions/build-mfem@v2.5
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
|
||||
+16
-1
@@ -57,6 +57,8 @@ examples/ex2[0-9]
|
||||
examples/ex2[0-9]p
|
||||
examples/ex3[0-9]
|
||||
examples/ex3[0-9]p
|
||||
examples/ex4[0-9]
|
||||
examples/ex4[0-9]p
|
||||
|
||||
examples/refined.mesh
|
||||
examples/displaced.mesh
|
||||
@@ -232,7 +234,7 @@ miniapps/meshing/mobius-strip.mesh
|
||||
miniapps/meshing/klein-bottle.mesh
|
||||
miniapps/meshing/toroid-*.mesh
|
||||
miniapps/meshing/twist-*.mesh
|
||||
miniapps/meshing/mesh-explorer.mesh
|
||||
miniapps/meshing/mesh-explorer.mesh*
|
||||
miniapps/meshing/partitioning.txt
|
||||
miniapps/meshing/mesh-explorer-visit*
|
||||
miniapps/meshing/mesh-explorer-paraview/
|
||||
@@ -270,16 +272,27 @@ miniapps/navier/*_output
|
||||
|
||||
miniapps/nurbs/nurbs_ex1
|
||||
miniapps/nurbs/nurbs_ex1p
|
||||
miniapps/nurbs/nurbs_ex3
|
||||
miniapps/nurbs/nurbs_ex5
|
||||
miniapps/nurbs/nurbs_ex11p
|
||||
miniapps/nurbs/nurbs_ex24
|
||||
miniapps/nurbs/nurbs_solenoidal
|
||||
miniapps/nurbs/nurbs_printfunc
|
||||
miniapps/nurbs/nurbs_patch_ex1
|
||||
miniapps/nurbs/nurbs_curveint
|
||||
miniapps/nurbs/refined.mesh
|
||||
miniapps/nurbs/mesh.*
|
||||
miniapps/nurbs/sol_?.gf
|
||||
miniapps/nurbs/sol.*
|
||||
miniapps/nurbs/mode_*
|
||||
miniapps/nurbs/Example1*
|
||||
miniapps/nurbs/Example3*
|
||||
miniapps/nurbs/Example5*
|
||||
miniapps/nurbs/Solenoidal*
|
||||
miniapps/nurbs/ParaView
|
||||
miniapps/nurbs/sin-fit.mesh
|
||||
miniapps/nurbs/ex5.mesh
|
||||
miniapps/nurbs/exsol.mesh
|
||||
miniapps/nurbs/CurveInt
|
||||
miniapps/nurbs/nurbs_naca_cmesh
|
||||
miniapps/nurbs/naca-cmesh.mesh
|
||||
@@ -369,6 +382,8 @@ miniapps/dpg/ParaView
|
||||
miniapps/spde/generate_random_field
|
||||
miniapps/spde/ParaView
|
||||
|
||||
miniapps/tribol/contact-patch-test
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
|
||||
@@ -13,6 +13,9 @@
|
||||
# at Lawrence Livermore National Laboratory (LLNL). This entire pipeline is
|
||||
# LLNL-specific!
|
||||
|
||||
include:
|
||||
- project: 'lc-templates/id_tokens'
|
||||
file: 'id_tokens.yml'
|
||||
|
||||
# The pipeline is divided into stages. Usually, jobs in a given stage wait for
|
||||
# the preceding stages to complete before to start. However, we sometimes use
|
||||
|
||||
@@ -9,6 +9,10 @@
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
include:
|
||||
- project: 'lc-templates/id_tokens'
|
||||
file: 'id_tokens.yml'
|
||||
|
||||
# We define the following GitLab pipeline variables:
|
||||
variables:
|
||||
|
||||
|
||||
@@ -35,9 +35,8 @@ variables:
|
||||
- when: on_success
|
||||
|
||||
# Lassen uses a different job scheduler (spectrum lsf) that does not allow
|
||||
# pre-allocation the same way slurm does. We use pdebug queue on lassen
|
||||
# to speed-up the allocation. However this would not be scalable to
|
||||
# multiple builds.
|
||||
# pre-allocation the same way slurm does. We use the pci queue on lassen
|
||||
# to speed-up the allocation.
|
||||
.build_and_test_on_lassen:
|
||||
extends: [.on_lassen]
|
||||
stage: build_and_test
|
||||
@@ -45,5 +44,5 @@ variables:
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
# Next script uses 'THREADS': leaving it empty --> it uses 'make all -j'
|
||||
- lalloc 1 -W 45 -q pdebug --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
- lalloc 1 -W 45 -q pci --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
needs: [setup]
|
||||
|
||||
@@ -52,4 +52,4 @@ variables:
|
||||
- echo ${JOBID}
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 45 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) --reservation=ci -t 45 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
|
||||
@@ -14,14 +14,14 @@ stages:
|
||||
- build_and_test
|
||||
- report
|
||||
|
||||
opt_mpi_cuda_xl_16_1_1_12:
|
||||
opt_mpi_cuda_gcc:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70"
|
||||
SPEC: "%gcc@8.3.1 +mpi +cuda cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
opt_mpi_cuda_hypre_cuda_xl:
|
||||
opt_mpi_cuda_hypre_cuda_gcc:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
|
||||
SPEC: "%gcc@8.3.1 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
# Jobs report
|
||||
|
||||
@@ -32,11 +32,11 @@ mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
|
||||
|
||||
# run
|
||||
if [[ "${MACHINE_NAME}" == "quartz" || "${MACHINE_NAME}" == "ruby" ]]; then
|
||||
salloc --nodes=1 -p pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
salloc --nodes=1 --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "corona" ]]; then
|
||||
salloc --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "lassen" ]]; then
|
||||
lalloc 1 -q pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
lalloc 1 -q pci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
else
|
||||
echo "Unknown machine: MACHINE_NAME=$MACHINE_NAME"
|
||||
exit 1
|
||||
|
||||
@@ -8,74 +8,117 @@
|
||||
https://mfem.org
|
||||
|
||||
|
||||
Version 4.6.1 (development)
|
||||
Version 4.7.1 (development)
|
||||
===========================
|
||||
|
||||
- Added NURBS-based H(div) and H(curl) elements in 2D and 3D. Only on single
|
||||
patch meshes. Only implemented for serial computations.
|
||||
|
||||
- Added miniapps to demonstrate the H(div) and H(curl) NURBS elements.
|
||||
|
||||
- Added an MFEM example for the eikonal equation. This new solver is based on
|
||||
the proximal Galerkin method introduced by Keith and Surowiec.
|
||||
|
||||
- API change: in class GridFunction, 'fec' was renamed to 'fec_owned'.
|
||||
|
||||
|
||||
Version 4.7, released on May 7, 2024
|
||||
====================================
|
||||
|
||||
- Added support for single precision (with corresponding hypre build). The MFEM
|
||||
floating point type was generalized from `double` to `real_t`. For details see
|
||||
https://github.com/orgs/mfem/discussions/4207.
|
||||
|
||||
Meshing improvements
|
||||
--------------------
|
||||
- Added the capability to partition (big) serial meshes in serial code, see the
|
||||
new classes MeshPartitioner and MeshPart. This capability is also exposed as a
|
||||
menu option in the mesh-explorer miniapp in miniapps/meshing.
|
||||
|
||||
- Added named attribute sets and basic supporting methods to the Mesh class as a
|
||||
convenient means of referring to sets of domain or boundary attribute numbers.
|
||||
See the new Example 39/39p and data/compass.mesh.
|
||||
|
||||
- Introduced formulas for refinement of patches in NURBS meshes. Refinement by
|
||||
arbitrary integer factors is also enabled, e.g. in the mesh-explorer miniapp.
|
||||
NURBS coarsening and knot removal are also introduced.
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Introduced support for higher order non conformal Nedelec elements on
|
||||
simplices in ParMesh.
|
||||
- Introduced support for internal boundary elements in nonconformal adapted
|
||||
meshes.
|
||||
|
||||
- Added functionality for construction of cut-surface and cut-volume
|
||||
IntegrationRules through a moment-fitting approach. The cut is specified by
|
||||
the zero level set of a Coefficient. See fem/intrules_cut.hpp and Example 38.
|
||||
|
||||
- Added a new nonlinear integrator, `HyperbolicFormIntegrator`. This implements
|
||||
both element-wise weak divergence and face-wise numerical flux for a general
|
||||
system of hyperbolic conservation laws. To use this integrator for a specific
|
||||
flux function, users can define a derived class of `FluxFunction`. Currently,
|
||||
advection, Burgers', shallow-water, Euler equations (see, Example 18) are
|
||||
available.
|
||||
|
||||
GPU support
|
||||
----------------------------
|
||||
- Added support for full assembly on simplices.
|
||||
- Added functionality for BilinearFormIntegrators to use kernels that work for both
|
||||
tensor and unstructured elements.
|
||||
- Added partial assembly for linear elasticity. Does not use sum factorization for now.
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new block solver in miniapp/solvers for the Darcy problem.
|
||||
The new solver is based on a Bramble-Pasciak preconditioning. User can
|
||||
use and implement their own preconditioner for the mass matrix.
|
||||
|
||||
- Added miniapp to demonstrate new elasticity integrator and unstructured element GPU support,
|
||||
and a block diagonal preconditioner using low order refinement. Allows comparison with
|
||||
currently existing legacy mode integrator. See miniapps/solvers/lor_elast.
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- Added support for single and double precision, with corresponding hypre build.
|
||||
Generalized the floating point type from `double` to `real_t`. For more
|
||||
details see https://github.com/orgs/mfem/discussions/4207.
|
||||
- Added support for internal boundary elements in nonconforming meshes.
|
||||
|
||||
- The ReadCubit Genesis mesh importer has been rewritten to improve readability.
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Added a new nonlinear integrator, `HyperbolicFormIntegrator` that implements
|
||||
both element-wise weak divergence and face-wise numerical flux for a general
|
||||
system of hyperbolic conservation laws. To use the integrator for a specific
|
||||
flux function, users can define a derived class of `FluxFunction`. Currently,
|
||||
advection, Burgers, shallow-water and Euler equations (see Example 18/18p) are
|
||||
available.
|
||||
|
||||
- Added a capability to construct cut-surface and cut-volume IntegrationRules
|
||||
through a moment-fitting approach. The cut is specified by the zero level set
|
||||
of a Coefficient. See fem/intrules_cut.hpp and the new Example 38.
|
||||
|
||||
- Introduced support for high-order nonconforming Nedelec elements on simplices.
|
||||
|
||||
GPU computing
|
||||
-------------
|
||||
- Added partial assembly and GPU support for the DG diffusion integrator.
|
||||
|
||||
- Efficient GPU-accelerated LOR assembly is now supported on surface meshes.
|
||||
|
||||
- Added functionality to automatically configure hypre's compute policy to match
|
||||
MFEM's compute policy when hypre is built with GPU support. Requires version
|
||||
hypre-2.31.0 or later.
|
||||
|
||||
- Added support for full assembly on simplices.
|
||||
|
||||
- Added partial assembly for linear elasticity (no sum factorization for now).
|
||||
|
||||
- Added functionality for BilinearFormIntegrators to use kernels that work for
|
||||
both tensor and unstructured elements.
|
||||
|
||||
- The RAJA backend will use `seq_exec` for serial loop execution when RAJA
|
||||
v2023.06.00 and beyond is detected as `loop_exec` is deprecated.
|
||||
|
||||
- API change: The macro MFEM_HYPRE_FORALL (from hypre.hpp) which was intended
|
||||
for internal use, has been removed and replaced by the function template
|
||||
mfem::hypre_forall in general/forall.hpp.
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new miniapp illustrating elastic contact based on the Tribol library,
|
||||
(https://github.com/LLNL/Tribol). See miniapps/tribol.
|
||||
|
||||
- Added a miniapp to demonstrate low order refined (LOR) block preconditioning
|
||||
for linear elasticity on GPUs. See miniapps/solvers/lor_elast.
|
||||
|
||||
- Added a new block solver in miniapp/solvers for the Darcy problem. The new
|
||||
solver is based on a Bramble-Pasciak preconditioning. User can use and
|
||||
implement their own preconditioner for the mass matrix.
|
||||
|
||||
- Added a small miniapp for printing the shape functions of a KnotVector. See
|
||||
miniapps/nurbs/nurbs_printfunc.cpp.
|
||||
|
||||
- Added two new example codes: 38 and 39/39p described above. Substantially
|
||||
updated Example 18/18p.
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- Updated the Doxygen documentation style, which now requires Doxygen version
|
||||
1.9.8 or later. See the doc/ directory.
|
||||
|
||||
- Improved thread safety for global variables in the library, for example
|
||||
IntegrationRules IntRules, RefinedIntRules, GeometryRefiner
|
||||
GlobGeometryRefiner, and FiniteElement::dof2quad_array.
|
||||
- Improved thread safety for global variables in the library, e.g. for IntRules,
|
||||
RefinedIntRules, GlobGeometryRefiner, and FiniteElement::dof2quad_array.
|
||||
|
||||
- PETSc integration now generally requires PETSc version 3.21 or later, though
|
||||
depending on the functionality older versions may still work.
|
||||
|
||||
- RAJA backend will use seq_exec for serial loop execution when RAJA
|
||||
v2023.06.00 and beyond is detected as loop_exec is deprecated.
|
||||
- Various other simplifications, extensions, and bugfixes in the code.
|
||||
|
||||
- Added GSLIB-based gather-scatter operator.
|
||||
|
||||
- Adding named attribute sets and basic supporting methods to the Mesh class as
|
||||
a convenient means of referring to sets of domain or boundary attribute
|
||||
numbers. Also adding related serial and parallel examples which illustrate.
|
||||
|
||||
Version 4.6, released on September 27, 2023
|
||||
===========================================
|
||||
@@ -96,7 +139,6 @@ Meshing improvements
|
||||
* The edge to knot map for NURBS meshes can be determined automatically. It is
|
||||
no longer needed to specify this in the NURBS mesh.
|
||||
* Added curve interpolation method for NURBS.
|
||||
* Added new small miniapp for printing of shape functions of a KnotVector
|
||||
* See miniapps/nurbs for example meshes and miniapps.
|
||||
|
||||
Discretization improvements
|
||||
@@ -143,8 +185,6 @@ Linear and nonlinear solvers
|
||||
|
||||
- Added HIP support to the PETSc and SUNDIALS interfaces.
|
||||
|
||||
- Efficient GPU-accelerated LOR assembly now supports surface meshes.
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new H(div) solver miniapp demonstrating the use of a matrix-free
|
||||
|
||||
+13
-3
@@ -58,7 +58,7 @@ project(mfem NONE)
|
||||
# Current version of MFEM, see also `makefile`.
|
||||
# mfem_VERSION = (string)
|
||||
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
|
||||
set(${PROJECT_NAME}_VERSION 4.6.1)
|
||||
set(${PROJECT_NAME}_VERSION 4.7.1)
|
||||
|
||||
# Prohibit in-source build
|
||||
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
|
||||
@@ -87,10 +87,11 @@ if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
|
||||
# Just needed to find the MPI_Fortran libraries to link with
|
||||
set(XSDK_ENABLE_Fortran ON)
|
||||
endif()
|
||||
# SUNDIALS, STRUMPACK, Ginkgo, RAJA and Umpire require C++14:
|
||||
# SUNDIALS, STRUMPACK, Ginkgo, Tribol, RAJA and Umpire require C++14:
|
||||
if ((MFEM_USE_SUNDIALS OR
|
||||
MFEM_USE_STRUMPACK OR
|
||||
MFEM_USE_GINKGO OR
|
||||
MFEM_USE_TRIBOL OR
|
||||
MFEM_USE_RAJA OR
|
||||
MFEM_USE_UMPIRE) AND
|
||||
("${CMAKE_CXX_STANDARD}" LESS "14"))
|
||||
@@ -503,6 +504,15 @@ if (MFEM_USE_PARELAG)
|
||||
find_package(PARELAG REQUIRED)
|
||||
endif()
|
||||
|
||||
# Tribol
|
||||
if (MFEM_USE_TRIBOL)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(Tribol REQUIRED tribol redecomp)
|
||||
else()
|
||||
message(FATAL_ERROR " *** Tribol requires that MPI be enabled.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Enzyme
|
||||
if (MFEM_USE_ENZYME)
|
||||
find_package(ENZYME REQUIRED)
|
||||
@@ -548,7 +558,7 @@ set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
|
||||
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
|
||||
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
|
||||
ADIOS2 CUSPARSE MKL_CPARDISO MKL_PARDISO AMGX CALIPER CODIPACK
|
||||
BENCHMARK PARELAG MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
BENCHMARK PARELAG TRIBOL MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
|
||||
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
|
||||
set(TPL_LIBRARIES "")
|
||||
|
||||
+2
-1
@@ -151,7 +151,8 @@ The MFEM source code has the following structure:
|
||||
│ ├── solvers
|
||||
│ ├── spde
|
||||
│ ├── tools
|
||||
│ └── toys
|
||||
│ ├── toys
|
||||
│ └── tribol
|
||||
└── tests
|
||||
├── benchmarks
|
||||
├── convergence
|
||||
|
||||
@@ -75,6 +75,8 @@ and miniapps. See https://glvis.org and https://mfem.org/building.
|
||||
|
||||
Quick start with GNU make
|
||||
=========================
|
||||
See also: https://mfem.org/building
|
||||
|
||||
Serial build:
|
||||
make serial -j 4
|
||||
|
||||
@@ -83,6 +85,7 @@ Parallel build:
|
||||
(build METIS 4 in ../metis-4.0 relative to mfem/)
|
||||
(build hypre in ../hypre relative to mfem/)
|
||||
make parallel -j 4
|
||||
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
|
||||
|
||||
CUDA build:
|
||||
make cuda -j 4
|
||||
@@ -116,6 +119,7 @@ Parallel build:
|
||||
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
|
||||
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES
|
||||
make -j 4
|
||||
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
|
||||
|
||||
CUDA build:
|
||||
(this build requires CMake 3.8 or newer)
|
||||
@@ -571,6 +575,11 @@ MFEM_USE_PARELAG = YES/NO
|
||||
use ParELAG. In fact, ParELAG is dependent on MFEM. Therefore, this option
|
||||
currently only concerns the miniapps.
|
||||
|
||||
MFEM_USE_TRIBOL = YES/NO
|
||||
Enables the miniapps that use the Tribol library. MFEM does not currently
|
||||
use Tribol. In fact, Tribol is dependent on MFEM. Therefore, this option
|
||||
currently only concerns the miniapps.
|
||||
|
||||
MFEM_USE_ENZYME = YES/NO
|
||||
Enables automatic differentiation support through the LLVM plugin Enzyme.
|
||||
This requires the compiler to be set to clang (>=14.0.0). We also advise to
|
||||
@@ -607,9 +616,13 @@ The specific libraries and their options are:
|
||||
HYPRE >= 2.20.0 (HYPRE built with '--enable-mixedint')
|
||||
HYPRE >= 2.22.1 (HYPRE built with CUDA)
|
||||
HYPRE >= 2.23.0 (HYPRE built with HIP)
|
||||
HYPRE >= 2.31.0 (runtime selectable HYPRE execution on CPU/GPU)
|
||||
|
||||
- METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
|
||||
MFEM_USE_METIS_5 = YES (default is to use METIS 4).
|
||||
MFEM_USE_METIS_5 = YES (default is to use METIS 4). For building instructions,
|
||||
see the following:
|
||||
- METIS 4.0.3: https://mfem.org/building/#parallel-mpi-version-of-mfem
|
||||
- METIS 5.1.0: https://mfem.org/building/#parallel-build-using-metis-5
|
||||
URL: https://github.com/mfem/tpls (MFEM mirror, see above)
|
||||
Options: METIS_OPT, METIS_LIB.
|
||||
Versions: METIS 4.0.3 or 5.1.0.
|
||||
@@ -857,6 +870,10 @@ The specific libraries and their options are:
|
||||
URL: https://github.com/LLNL/parelag
|
||||
Options: PARELAG_DIR, PARELAG_OPT, PARELAG_LIB.
|
||||
|
||||
- Tribol, used when MFEM_USE_TRIBOL = YES.
|
||||
URL: https://github.com/LLNL/Tribol
|
||||
Options: TRIBOL_DIR, TRIBOL_OPT, TRIBOL_LIB.
|
||||
|
||||
- Enzyme, used when MFEM_USE_ENZYME = YES. Requires LLVM/Clang >= 14.0.0.
|
||||
URL: https://github.com/EnzymeAD/Enzyme
|
||||
Options: ENZYME_DIR, ENZYME_OPT, ENZYME_LIB.
|
||||
@@ -1001,6 +1018,7 @@ MFEM_USE_CALIPER
|
||||
MFEM_USE_FMS
|
||||
MFEM_USE_BENCHMARK
|
||||
MFEM_USE_PARELAG
|
||||
MFEM_USE_TRIBOL
|
||||
MFEM_USE_ENZYME
|
||||
|
||||
The following options are CMake specific:
|
||||
|
||||
@@ -287,3 +287,7 @@ ENDIF()
|
||||
IF (DEFINED TPL_ENABLE_PARELAG)
|
||||
SET(MFEM_USE_PARELAG ${TPL_ENABLE_PARELAG} CACHE BOOL "Enable ParELAG" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_TRIBOL)
|
||||
SET(MFEM_USE_TRIBOL ${TPL_ENABLE_TRIBOL} CACHE BOOL "Enable Tribol" FORCE)
|
||||
ENDIF()
|
||||
|
||||
@@ -64,6 +64,7 @@ set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
|
||||
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
|
||||
set(MFEM_USE_BENCHMARK @MFEM_USE_BENCHMARK@)
|
||||
set(MFEM_USE_PARELAG @MFEM_USE_PARELAG@)
|
||||
set(MFEM_USE_TRIBOL @MFEM_USE_TRIBOL@)
|
||||
set(MFEM_USE_ENZYME @MFEM_USE_ENZYME@)
|
||||
|
||||
set(MFEM_CXX_COMPILER "@CMAKE_CXX_COMPILER@")
|
||||
|
||||
@@ -18,4 +18,13 @@ include(MfemCmakeUtilities)
|
||||
# Note: components are enabled based on the find_package() parameters.
|
||||
mfem_find_package(Axom AXOM AXOM_DIR "include" "" "lib" ""
|
||||
"Paths to headers required by Axom." "Libraries required by Axom."
|
||||
ADD_COMPONENT Axom "include" axom/config.hpp "lib" axom)
|
||||
ADD_COMPONENT core "include" axom/core.hpp "lib" axom_core
|
||||
ADD_COMPONENT inlet "include" axom/inlet.hpp "lib" axom_inlet
|
||||
ADD_COMPONENT klee "include" axom/klee.hpp "lib" axom_klee
|
||||
ADD_COMPONENT lumberjack "include" axom/lumberjack.hpp "lib" axom_lumberjack
|
||||
ADD_COMPONENT mint "include" axom/mint.hpp "lib" axom_mint
|
||||
ADD_COMPONENT multimat "include" axom/multimat.hpp "lib" axom_multimat
|
||||
ADD_COMPONENT quest "include" axom/quest.hpp "lib" axom_quest
|
||||
ADD_COMPONENT sidre "include" axom/sidre.hpp "lib" axom_sidre
|
||||
ADD_COMPONENT slam "include" axom/slam.hpp "lib" axom_slam
|
||||
ADD_COMPONENT slic "include" axom/slic.hpp "lib" axom_slic)
|
||||
|
||||
@@ -36,7 +36,11 @@ include(MfemCmakeUtilities)
|
||||
mfem_find_package(Conduit CONDUIT CONDUIT_DIR
|
||||
"include;include/conduit" conduit.hpp "lib" conduit
|
||||
"Paths to headers required by Conduit." "Libraries required by Conduit."
|
||||
ADD_COMPONENT blueprint
|
||||
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint
|
||||
ADD_COMPONENT blueprint_mpi
|
||||
"include;include/conduit" conduit_blueprint_mpi.hpp "lib" conduit_blueprint_mpi
|
||||
ADD_COMPONENT relay
|
||||
"include;include/conduit" conduit_relay.hpp "lib" conduit_relay
|
||||
ADD_COMPONENT blueprint
|
||||
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
|
||||
ADD_COMPONENT relay_mpi
|
||||
"include;include/conduit" conduit_relay_mpi.hpp "lib" conduit_relay_mpi)
|
||||
|
||||
@@ -16,12 +16,22 @@
|
||||
# - MUMPS_VERSION
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
|
||||
# Toggle which precision of MUMPS to use depending on the precision of MFEM.
|
||||
if (MFEM_USE_DOUBLE)
|
||||
set(_mumps_header dmumps_c.h)
|
||||
set(_mumps_lib dmumps)
|
||||
elseif(MFEM_USE_SINGLE)
|
||||
set(_mumps_header smumps_c.h)
|
||||
set(_mumps_lib smumps)
|
||||
endif()
|
||||
|
||||
mfem_find_package(MUMPS MUMPS MUMPS_DIR
|
||||
"include" dmumps_c.h "lib" dmumps
|
||||
"include" ${_mumps_header} "lib" ${_mumps_lib}
|
||||
"Paths to headers required by MUMPS."
|
||||
"Libraries required by MUMPS."
|
||||
ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
|
||||
ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
|
||||
ADD_COMPONENT mumps_common "include" ${_mumps_header} "lib" mumps_common
|
||||
ADD_COMPONENT pord "include" ${_mumps_header} "lib" pord)
|
||||
|
||||
if (MUMPS_FOUND AND (NOT MUMPS_VERSION))
|
||||
try_run(MUMPS_VERSION_RUN_RESULT MUMPS_VERSION_COMPILE_RESULT
|
||||
|
||||
@@ -0,0 +1,22 @@
|
||||
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - TRIBOL_FOUND
|
||||
# - TRIBOL_LIBRARIES
|
||||
# - TRIBOL_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
# Note: components are enabled based on the find_package() parameters.
|
||||
mfem_find_package(Tribol TRIBOL TRIBOL_DIR "include" tribol/config.hpp "lib" tribol
|
||||
"Paths to headers required by Tribol." "Libraries required by Tribol."
|
||||
ADD_COMPONENT redecomp
|
||||
"include" redecomp/redecomp.hpp "lib" redecomp)
|
||||
@@ -852,8 +852,8 @@ function(mfem_export_mk_files)
|
||||
MFEM_USE_CUDA MFEM_USE_HIP MFEM_USE_RAJA MFEM_USE_OCCA MFEM_USE_CEED
|
||||
MFEM_USE_CALIPER MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2
|
||||
MFEM_USE_MKL_CPARDISO MFEM_USE_MKL_PARDISO MFEM_USE_ADFORWARD
|
||||
MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG MFEM_USE_MOONOLITH
|
||||
MFEM_USE_ALGOIM MFEM_USE_ENZYME)
|
||||
MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG MFEM_USE_TRIBOL
|
||||
MFEM_USE_MOONOLITH MFEM_USE_ALGOIM MFEM_USE_ENZYME)
|
||||
foreach(var ${CONFIG_MK_BOOL_VARS})
|
||||
if (${var})
|
||||
set(${var} YES)
|
||||
|
||||
@@ -120,6 +120,15 @@ constexpr real_t operator""_r(unsigned long long v)
|
||||
|
||||
// Check dependencies:
|
||||
|
||||
// Define MFEM_MPI_REAL_T to be the appropriate MPI real type
|
||||
#ifdef MFEM_USE_MPI
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
#define MFEM_MPI_REAL_T MPI_FLOAT
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
#define MFEM_MPI_REAL_T MPI_DOUBLE
|
||||
#endif
|
||||
#endif
|
||||
|
||||
// Options that require MPI
|
||||
#ifndef MFEM_USE_MPI
|
||||
#ifdef MFEM_USE_SUPERLU
|
||||
|
||||
@@ -65,6 +65,7 @@ MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
|
||||
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
|
||||
MFEM_USE_BENCHMARK = @MFEM_USE_BENCHMARK@
|
||||
MFEM_USE_PARELAG = @MFEM_USE_PARELAG@
|
||||
MFEM_USE_TRIBOL = @MFEM_USE_TRIBOL@
|
||||
MFEM_USE_ENZYME = @MFEM_USE_ENZYME@
|
||||
|
||||
# Compiler, compile options, and link options
|
||||
|
||||
+14
-2
@@ -67,6 +67,7 @@ option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
|
||||
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
|
||||
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
|
||||
option(MFEM_USE_PARELAG "Enable ParELAG" OFF)
|
||||
option(MFEM_USE_TRIBOL "Enable Tribol" OFF)
|
||||
option(MFEM_USE_ENZYME "Enable Enzyme" OFF)
|
||||
|
||||
# Optional overrides for autodetected MPIEXEC and MPIEXEC_NUMPROC_FLAG
|
||||
@@ -212,8 +213,15 @@ set(CONDUIT_DIR "${MFEM_DIR}/../conduit" CACHE PATH
|
||||
|
||||
set(AXOM_DIR "${MFEM_DIR}/../axom" CACHE PATH "Path to the Axom library.")
|
||||
# May need to add "Boost" as requirement.
|
||||
set(Axom_REQUIRED_PACKAGES "Conduit/relay/blueprint" CACHE STRING
|
||||
"Additional packages required by Axom.")
|
||||
if (MFEM_USE_SIDRE)
|
||||
if (MFEM_USE_MPI)
|
||||
set(Axom_REQUIRED_PACKAGES "Conduit/blueprint/blueprint_mpi/relay/relay_mpi" CACHE STRING
|
||||
"Additional packages required by Axom.")
|
||||
elseif()
|
||||
set(Axom_REQUIRED_PACKAGES "Conduit/blueprint/relay" CACHE STRING
|
||||
"Additional packages required by Axom.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
set(PUMI_DIR "${MFEM_DIR}/../pumi-2.1.0" CACHE STRING
|
||||
"Directory where PUMI is installed")
|
||||
@@ -250,6 +258,10 @@ set(PARELAG_INCLUDE_DIRS "${PARELAG_DIR}/src;${PARELAG_DIR}/build/src" CACHE
|
||||
set(PARELAG_LIBRARIES "${PARELAG_DIR}/build/src/libParELAG.a" CACHE STRING
|
||||
"The ParELAG library.")
|
||||
|
||||
set(TRIBOL_DIR "${MFEM_DIR}/../tribol" CACHE PATH "Path to Tribol")
|
||||
set(Tribol_REQUIRED_PACKAGES "Axom/core/mint/slam/slic" CACHE STRING
|
||||
"Additional packages required by Tribol")
|
||||
|
||||
set(BLAS_INCLUDE_DIRS "" CACHE STRING "Path to BLAS headers.")
|
||||
set(BLAS_LIBRARIES "" CACHE STRING "The BLAS library.")
|
||||
set(LAPACK_INCLUDE_DIRS "" CACHE STRING "Path to LAPACK headers.")
|
||||
|
||||
+26
-3
@@ -167,8 +167,21 @@ MFEM_USE_ADFORWARD = NO
|
||||
MFEM_USE_CODIPACK = NO
|
||||
MFEM_USE_BENCHMARK = NO
|
||||
MFEM_USE_PARELAG = NO
|
||||
MFEM_USE_TRIBOL = NO
|
||||
MFEM_USE_ENZYME = NO
|
||||
|
||||
# Process MFEM_PRECISION -> MFEM_USE_SINGLE, MFEM_USE_DOUBLE
|
||||
ifneq ($(filter double Double DOUBLE,$(MFEM_PRECISION)),)
|
||||
MFEM_USE_DOUBLE = YES
|
||||
MFEM_USE_SINGLE = NO
|
||||
else ifneq ($(filter single Single SINGLE,$(MFEM_PRECISION)),)
|
||||
MFEM_USE_DOUBLE = NO
|
||||
MFEM_USE_SINGLE = YES
|
||||
else ifeq ($(MAKECMDGOALS),config)
|
||||
$(error Invalid floating-point precision: \
|
||||
MFEM_PRECISION = $(MFEM_PRECISION))
|
||||
endif
|
||||
|
||||
# MPI library compile and link flags
|
||||
# These settings are used only when building MFEM with MPI + HIP
|
||||
ifeq ($(MFEM_USE_MPI)$(MFEM_USE_HIP),YESYES)
|
||||
@@ -318,13 +331,13 @@ MPI_FORTRAN_LIB = -lmpifort
|
||||
# MUMPS library configuration
|
||||
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.5.0
|
||||
MUMPS_OPT = -I$(MUMPS_DIR)/include
|
||||
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib \
|
||||
-lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
|
||||
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib
|
||||
ifeq ($(MFEM_USE_SINGLE),YES)
|
||||
MUMPS_LIB += -lsmumps
|
||||
else
|
||||
MUMPS_LIB += -ldmumps
|
||||
endif
|
||||
MUMPS_LIB += -lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
|
||||
|
||||
# STRUMPACK library configuration
|
||||
STRUMPACK_DIR = @MFEM_DIR@/../STRUMPACK-build
|
||||
@@ -375,7 +388,7 @@ GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_LINK_LIB_DIR) -L$(GINKGO_LINK_LIB_DIR)\
|
||||
# AmgX library configuration
|
||||
AMGX_DIR = @MFEM_DIR@/../amgx
|
||||
AMGX_OPT = -I$(AMGX_DIR)/include
|
||||
AMGX_LIB = -lcusparse -lcusolver -lcublas -lnvToolsExt -L$(AMGX_DIR)/lib -lamgx
|
||||
AMGX_LIB = -L$(AMGX_DIR)/lib -lamgx -lcusparse -lcusolver -lcublas -lnvToolsExt
|
||||
|
||||
# GnuTLS library configuration
|
||||
GNUTLS_OPT =
|
||||
@@ -576,6 +589,16 @@ PARELAG_DIR = @MFEM_DIR@/../parelag
|
||||
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
|
||||
PARELAG_LIB = -L$(PARELAG_DIR)/build/src -lParELAG
|
||||
|
||||
# Tribol library configuration
|
||||
ifeq ($(MFEM_USE_TRIBOL),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
AXOM_DIR = @MFEM_DIR@/../axom
|
||||
TRIBOL_DIR = @MFEM_DIR@/../tribol
|
||||
TRIBOL_OPT = -I$(TRIBOL_DIR)/include -I$(AXOM_DIR)/include
|
||||
TRIBOL_LIB = -L$(TRIBOL_DIR)/lib -ltribol -lredecomp -L$(AXOM_DIR)/lib -laxom_mint\
|
||||
-laxom_slam -laxom_slic -laxom_core
|
||||
|
||||
# Enzyme configuration
|
||||
|
||||
# If you want to enable automatic differentiation at compile time, use the
|
||||
|
||||
+1
-1
@@ -110,4 +110,4 @@ config-mk:
|
||||
|
||||
clean:
|
||||
rm -f $(CONFIG_HPP) $(CONFIG_MK) sample-runs-build.log
|
||||
rm -f $(GHV) $(GHV).out $(GMV) $(GMV).out
|
||||
rm -f $(GHV) $(GHV).out $(GMV) $(GMV).out *.dSYM
|
||||
|
||||
+83
-13
@@ -32,7 +32,7 @@ groups_serial=(
|
||||
'"examples"
|
||||
"Examples:"
|
||||
"examples"
|
||||
"ex{,1,2,3}[0-9].cpp"'
|
||||
"ex{,[1-9]}[0-9].cpp"'
|
||||
# "ex1.cpp"'
|
||||
'"sundials"
|
||||
"SUNDIALS examples:"
|
||||
@@ -58,6 +58,10 @@ groups_serial=(
|
||||
"HiOp examples:"
|
||||
"examples/hiop"
|
||||
"ex9.cpp"'
|
||||
'"moonolith"
|
||||
"Moonolith examples:"
|
||||
"examples/moonolith"
|
||||
"ex1.cpp"'
|
||||
'"pumi"
|
||||
"PUMI examples:"
|
||||
"examples/pumi"
|
||||
@@ -66,25 +70,38 @@ groups_serial=(
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp mesh-quality.cpp
|
||||
polar-nc.cpp reflector.cpp shaper.cpp trimmer.cpp twist.cpp
|
||||
mesh-optimizer.cpp minimal-surface.cpp"'
|
||||
'"adjoint"
|
||||
"Adjoint miniapps:"
|
||||
"miniapps/adjoint"
|
||||
"cvsRoberts_ASAi_dns.cpp"'
|
||||
'"autodiff"
|
||||
"Autodiff miniapps:"
|
||||
"miniapps/autodiff"
|
||||
"seq_example.cpp seq_test.cpp"' # 'seq_test.cpp' has no sample runs
|
||||
'"dpg"
|
||||
"DPG miniapps:"
|
||||
"miniapps/dpg"
|
||||
"{acoustics,convection-diffusion,diffusion,maxwell}.cpp"'
|
||||
'"gslib"
|
||||
"GSLIB miniapps:"
|
||||
"miniapps/gslib"
|
||||
"field-diff.cpp field-interp.cpp findpts.cpp schwarz_ex1.cpp "'
|
||||
# todo: miniapps/mtop
|
||||
'"nurbs"
|
||||
"NURBS miniapps:"
|
||||
"miniapps/nurbs"
|
||||
"nurbs_ex1.cpp"'
|
||||
# todo: add other nurbs miniapps
|
||||
# todo: miniapps/solvers (serial)
|
||||
'"tools"
|
||||
"Tools miniapps:"
|
||||
"miniapps/tools"
|
||||
"convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp
|
||||
lor-transfer.cpp"'
|
||||
# todo: add other tools miniapps
|
||||
'"toys"
|
||||
"Toys miniapps:"
|
||||
"miniapps/toys"
|
||||
@@ -100,7 +117,7 @@ groups_parallel=(
|
||||
'"examples"
|
||||
"Examples:"
|
||||
"examples"
|
||||
"ex{,1,2,3}[0-9]p.cpp"'
|
||||
"ex{,[1-9]}[0-9]p.cpp"'
|
||||
# "ex1p.cpp"'
|
||||
'"sundials"
|
||||
"SUNDIALS examples:"
|
||||
@@ -126,6 +143,10 @@ groups_parallel=(
|
||||
"HiOp examples:"
|
||||
"examples/hiop"
|
||||
"ex9p.cpp"'
|
||||
'"moonolith"
|
||||
"Moonolith examples:"
|
||||
"examples/moonolith"
|
||||
"ex{1,2}p.cpp"'
|
||||
'"pumi"
|
||||
"PUMI examples:"
|
||||
"examples/pumi"
|
||||
@@ -138,24 +159,41 @@ groups_parallel=(
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp"'
|
||||
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp
|
||||
fit-node-position.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
"joule.cpp"'
|
||||
# "{volta,tesla,joule}.cpp"' # todo: multiline sample runs
|
||||
# "{joule,maxwell,tesla,volta}.cpp"' # todo: multiline sample runs
|
||||
'"adjoint"
|
||||
"Adjoint miniapps:"
|
||||
"miniapps/adjoint"
|
||||
"adjoint_advection_diffusion.cpp"'
|
||||
'"autodiff"
|
||||
"Autodiff miniapps:"
|
||||
"miniapps/autodiff"
|
||||
"par_example.cpp"'
|
||||
'"dpg"
|
||||
"DPG miniapps:"
|
||||
"miniapps/dpg"
|
||||
"p{acoustics,convection-diffusion,diffusion,maxwell}.cpp"'
|
||||
'"gslib"
|
||||
"GSLIB miniapps:"
|
||||
"miniapps/gslib"
|
||||
"pfindpts.cpp schwarz_ex1p.cpp"'
|
||||
'"hdiv-linear-solver"
|
||||
"H(div) linear solver miniapps:"
|
||||
"miniapps/hdiv-linear-solver"
|
||||
"grad_div.cpp darcy.cpp"'
|
||||
# 'miniapps/hooke/hooke.cpp' has no sample runs
|
||||
# todo: miniapps/mtop
|
||||
# todo: miniapps/multidomain
|
||||
'"navier"
|
||||
"Navier miniapps:"
|
||||
"miniapps/navier"
|
||||
"navier_cht.cpp"'
|
||||
# todo: add other navier miniapps
|
||||
'"nurbs"
|
||||
"NURBS miniapps:"
|
||||
"miniapps/nurbs"
|
||||
@@ -164,14 +202,18 @@ groups_parallel=(
|
||||
"Shifted miniapps:"
|
||||
"miniapps/shifted"
|
||||
"distance.cpp"'
|
||||
# todo: add other shifted miniapps
|
||||
'"solvers"
|
||||
"Solvers miniapps:"
|
||||
"miniapps/solvers"
|
||||
"block-solvers.cpp"'
|
||||
# todo: add other solvers miniapps
|
||||
# todo: miniapps/spde
|
||||
'"tools"
|
||||
"Tools miniapps:"
|
||||
"miniapps/tools"
|
||||
"convert-cd.cpp get-values.cpp load-dc.cpp"'
|
||||
"convert-dc.cpp get-values.cpp load-dc.cpp"'
|
||||
# todo: add other tools miniapps
|
||||
'"convergence"
|
||||
"Convergence tests:"
|
||||
"tests/convergence"
|
||||
@@ -186,7 +228,7 @@ groups_all=(
|
||||
'"examples"
|
||||
"Examples:"
|
||||
"examples"
|
||||
"ex\"{,1,2,3}[0-9]\"{,p}.cpp"'
|
||||
"ex\"{,[1-9]}[0-9]\"{,p}.cpp"'
|
||||
'"sundials"
|
||||
"SUNDIALS examples:"
|
||||
"examples/sundials"
|
||||
@@ -215,10 +257,14 @@ groups_all=(
|
||||
"HiOp examples:"
|
||||
"examples/hiop"
|
||||
"ex9.cpp ex9p.cpp"'
|
||||
'"moonolith"
|
||||
"Moonolith examples:"
|
||||
"examples/moonolith"
|
||||
"ex1.cpp ex{1,2}p.cpp"'
|
||||
'"pumi"
|
||||
"PUMI examples:"
|
||||
"examples/pumi"
|
||||
"ex1.cpp ex1p.cpp ex2.cpp ex6p.cpp"'
|
||||
"ex1.cpp ex2.cpp ex1p.cpp ex6p.cpp"'
|
||||
'"superlu"
|
||||
"Superlu examples:"
|
||||
"examples/superlu"
|
||||
@@ -226,43 +272,67 @@ groups_all=(
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
|
||||
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp"'
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp mesh-quality.cpp
|
||||
polar-nc.cpp reflector.cpp shaper.cpp trimmer.cpp twist.cpp
|
||||
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp
|
||||
fit-node-position.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
"joule.cpp"'
|
||||
# "{volta,tesla,joule}.cpp"' # todo: multiline sample runs
|
||||
# "{joule,maxwell,tesla,volta}.cpp"' # todo: multiline sample runs
|
||||
'"adjoint"
|
||||
"Adjoint miniapps:"
|
||||
"miniapps/adjoint"
|
||||
"adjoint_advection_diffusion.cpp cvsRoberts_ASAi_dns.cpp"'
|
||||
"cvsRoberts_ASAi_dns.cpp adjoint_advection_diffusion.cpp"'
|
||||
'"autodiff"
|
||||
"Autodiff miniapps:"
|
||||
"miniapps/autodiff"
|
||||
"seq_example.cpp seq_test.cpp par_example.cpp"'
|
||||
# 'seq_test.cpp' has no sample runs
|
||||
'"dpg"
|
||||
"DPG miniapps:"
|
||||
"miniapps/dpg"
|
||||
"{,p}{acoustics,convection-diffusion,diffusion,maxwell}.cpp"'
|
||||
'"gslib"
|
||||
"GSLIB miniapps:"
|
||||
"miniapps/gslib"
|
||||
"field-diff.cpp field-interp.cpp findpts.cpp schwarz_ex1.cpp pfindpts.cpp
|
||||
schwarz_ex1p.cpp"'
|
||||
'"hdiv-linear-solver"
|
||||
"H(div) linear solver miniapps:"
|
||||
"miniapps/hdiv-linear-solver"
|
||||
"grad_div.cpp darcy.cpp"'
|
||||
# 'miniapps/hooke/hooke.cpp' has no sample runs
|
||||
# todo: miniapps/mtop
|
||||
# todo: miniapps/multidomain
|
||||
'"navier"
|
||||
"Navier miniapps:"
|
||||
"miniapps/navier"
|
||||
"navier_cht.cpp"'
|
||||
# todo: add other navier miniapps
|
||||
'"nurbs"
|
||||
"NURBS miniapps:"
|
||||
"miniapps/nurbs"
|
||||
"nurbs_ex1.cpp nurbs_ex1p.cpp nurbs_ex11p.cpp"'
|
||||
# todo: add other nurbs miniapps
|
||||
'"shifted"
|
||||
"Shifted miniapps:"
|
||||
"miniapps/shifted"
|
||||
"distance.cpp"'
|
||||
# todo: add other shifted miniapps
|
||||
'"solvers"
|
||||
"Solvers miniapps:"
|
||||
"miniapps/solvers"
|
||||
"block-solvers.cpp"'
|
||||
# todo: add other solvers miniapps
|
||||
# todo: miniapps/spde
|
||||
'"tools"
|
||||
"Tools miniapps:"
|
||||
"miniapps/tools"
|
||||
"convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp
|
||||
lor-transfer.cpp"'
|
||||
# todo: add other tools miniapps
|
||||
'"toys"
|
||||
"Toys miniapps:"
|
||||
"miniapps/toys"
|
||||
@@ -386,7 +456,7 @@ function help_message()
|
||||
mfem_config [${mfem_config}]
|
||||
Set MFEM configuration options
|
||||
make [${make}], mpiexec [${mpiexec}], mpiexec_np [${mpiexec_np}]
|
||||
Their values can also set using the respective uppercase environment
|
||||
Their values can also be set using the respective uppercase environment
|
||||
variable
|
||||
mfem_build_dir [${mfem_build_dir}]
|
||||
Same as '-d': set this variable to something different from <mfem_dir>
|
||||
|
||||
@@ -92,4 +92,5 @@ vertices
|
||||
-0.70710678 -0.70710678
|
||||
0 -1
|
||||
0.70710678 -0.70710678
|
||||
|
||||
mfem_mesh_end
|
||||
|
||||
@@ -18,9 +18,9 @@ elements
|
||||
boundary
|
||||
4
|
||||
1 1 0 1
|
||||
1 1 2 3
|
||||
1 1 3 0
|
||||
1 1 1 2
|
||||
2 1 2 3
|
||||
3 1 3 0
|
||||
4 1 1 2
|
||||
|
||||
edges
|
||||
4
|
||||
|
||||
@@ -48,7 +48,7 @@ PROJECT_NAME = MFEM
|
||||
# could be handy for archiving the generated documentation or if some version
|
||||
# control system is used.
|
||||
|
||||
PROJECT_NUMBER = v4.6.1
|
||||
PROJECT_NUMBER = v4.7.1
|
||||
|
||||
# Using the PROJECT_BRIEF tag one can provide an optional one line description
|
||||
# for a project that appears at the top of each page and should give viewer a
|
||||
@@ -980,6 +980,7 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
|
||||
@MFEM_SOURCE_DIR@/miniapps/mtop \
|
||||
@MFEM_SOURCE_DIR@/miniapps/multidomain \
|
||||
@MFEM_SOURCE_DIR@/miniapps/navier \
|
||||
@MFEM_SOURCE_DIR@/miniapps/stabilized \
|
||||
@MFEM_SOURCE_DIR@/miniapps/nurbs \
|
||||
@MFEM_SOURCE_DIR@/miniapps/parelag \
|
||||
@MFEM_SOURCE_DIR@/miniapps/performance \
|
||||
@@ -987,6 +988,7 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
|
||||
@MFEM_SOURCE_DIR@/miniapps/solvers \
|
||||
@MFEM_SOURCE_DIR@/miniapps/tools \
|
||||
@MFEM_SOURCE_DIR@/miniapps/toys \
|
||||
@MFEM_SOURCE_DIR@/miniapps/tribol \
|
||||
@MFEM_SOURCE_DIR@/miniapps/spde \
|
||||
@MFEM_SOURCE_DIR@/miniapps/dpg \
|
||||
@MFEM_SOURCE_DIR@/miniapps/dpg/util
|
||||
@@ -1048,7 +1050,8 @@ RECURSIVE = NO
|
||||
EXCLUDE = @MFEM_SOURCE_DIR@/config/_config.hpp \
|
||||
@MFEM_SOURCE_DIR@/config/get_hypre_version.cpp \
|
||||
@MFEM_SOURCE_DIR@/general/tinyxml2.h \
|
||||
@MFEM_SOURCE_DIR@/general/tinyxml2.cpp
|
||||
@MFEM_SOURCE_DIR@/general/tinyxml2.cpp \
|
||||
@MFEM_SOURCE_DIR@/linalg/lapack.hpp
|
||||
|
||||
# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
|
||||
# directories that are symbolic links (a Unix file system feature) are excluded
|
||||
|
||||
@@ -110,9 +110,13 @@ namespace mfem {
|
||||
* - <a class="el" href="ex35p_8cpp_source.html">Example 35p</a>: parallel multi-domain damped harmonic oscillators
|
||||
* - <a class="el" href="ex36_8cpp_source.html">Example 36</a>: Proximal Galerkin FEM for the obstacle problem
|
||||
* - <a class="el" href="ex36p_8cpp_source.html">Example 36p</a>: parallel Proximal Galerkin FEM for the obstacle problem
|
||||
* - <a class="el" href="ex37_8cpp_source.html">Example 37</a>: Topology optimization
|
||||
* - <a class="el" href="ex37_8cpp_source.html">Example 37</a>: topology optimization
|
||||
* - <a class="el" href="ex37p_8cpp_source.html">Example 37p</a>: parallel topology optimization
|
||||
* - <a class="el" href="ex38_8cpp_source.html">Example 38</a>: cut-surface and cut-volume integration
|
||||
* - <a class="el" href="ex39_8cpp_source.html">Example 39</a>: named mesh attributes
|
||||
* - <a class="el" href="ex39p_8cpp_source.html">Example 39p</a>: parallel named mesh attributes
|
||||
* - <a class="el" href="ex40_8cpp_source.html">Example 40</a>: eikonal equation
|
||||
* - <a class="el" href="ex40p_8cpp_source.html">Example 40p</a>: parallel eikonal equation
|
||||
*
|
||||
* <H4>AmgX Examples</H4>
|
||||
* - Variants of Examples
|
||||
@@ -178,6 +182,21 @@ namespace mfem {
|
||||
* <a class="el" href="examples_2superlu_2ex1p_8cpp_source.html">1p</a>,
|
||||
* demonstrating the use of MFEM's \link superlu.hpp SuperLU integration\endlink.
|
||||
*
|
||||
* <H4>NURBS Examples</H4>
|
||||
* - Variants of Examples
|
||||
* <a class="el" href="nurbs__ex1_8cpp_source.html">1</a>,
|
||||
* <a class="el" href="nurbs__ex1p_8cpp_source.html">1p</a>,
|
||||
* <a class="el" href="nurbs__ex3_8cpp_source.html">3</a>,
|
||||
* <a class="el" href="nurbs__ex5_8cpp_source.html">5</a>,
|
||||
* <a class="el" href="nurbs__ex11p_8cpp_source.html">11p</a>, and
|
||||
* <a class="el" href="nurbs__ex24_8cpp_source.html">24</a>,
|
||||
* demonstrating howto perform NURBS-based Isogeometric Analysis.
|
||||
* - Variant of Example <a class="el" href="nurbs__patch__ex1_8cpp_source.html">1</a>: demonstrates the use of patch integration
|
||||
* - <a class="el" href="nurbs__solenoidal_8cpp_source.html">NURBS Divergence-free</a>: solve a solenoidal vector projection with NURBS-based H(div) elements
|
||||
* - <a class="el" href="nurbs__curveint_8cpp_source.html">NURBS Interpolation</a>: NURBS interpolation of given geometry
|
||||
* - <a class="el" href="nurbs__naca__cmesh_8cpp_source.html">NURBS NACA Mesher</a>: generate NURBS based mesh around a NACA foil
|
||||
* - <a class="el" href="nurbs__printfunc_8cpp_source.html">NURBS Printer</a>: print the NURBS-basis
|
||||
*
|
||||
* <H3>Miniapps</H3>
|
||||
* - <a class="el" href="volta_8cpp_source.html">Volta</a>: simple electrostatics simulation code
|
||||
* - <a class="el" href="tesla_8cpp_source.html">Tesla</a>: simple magnetostatics simulation code
|
||||
@@ -214,6 +233,8 @@ namespace mfem {
|
||||
* - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
|
||||
* - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Laplace problem
|
||||
* - <a class="el" href="generate__random__field_8cpp_source.html">SPDE Solvers</a>: SPDE solver random field generation
|
||||
* - <a class="el" href="contact-patch-test_8cpp_source.html">Contact</a>: mortar contact patch test for elasticity
|
||||
* - <a class="el" href="multidomain_8cpp_source.html">Multidomain miniapp</a>: Multidomain and Submesh demonstration miniapp
|
||||
* - <a class="el" href="pdiffusion_8cpp_source.html">DPG Diffusion example</a>: DPG formulation for the diffusion problem
|
||||
* - <a class="el" href="pmaxwell_8cpp_source.html">DPG Maxwell example</a>: DPG formulation for the indefinite Maxwell problem
|
||||
* - <a class="el" href="lor__elast_8cpp_source.html">LOR Elasticity</a>: solve linear elasticity with LOR preconditioning on GPUs
|
||||
|
||||
@@ -46,7 +46,7 @@ class DoxygenAwesomeDarkModeToggle extends HTMLElement {
|
||||
DoxygenAwesomeDarkModeToggle.onSystemPreferenceChanged()
|
||||
})
|
||||
// Update the color scheme when the tab is made visible again.
|
||||
// It is possible that the appearance was changed in another tab
|
||||
// It is possible that the appearance was changed in another tab
|
||||
// while this tab was in the background.
|
||||
document.addEventListener("visibilitychange", visibilityState => {
|
||||
if (document.visibilityState === 'visible') {
|
||||
@@ -97,7 +97,7 @@ class DoxygenAwesomeDarkModeToggle extends HTMLElement {
|
||||
* @returns `true` for dark-mode, `false` for light-mode user preference
|
||||
*/
|
||||
static get userPreference() {
|
||||
return (!DoxygenAwesomeDarkModeToggle.systemPreference && localStorage.getItem(DoxygenAwesomeDarkModeToggle.prefersDarkModeInLightModeKey)) ||
|
||||
return (!DoxygenAwesomeDarkModeToggle.systemPreference && localStorage.getItem(DoxygenAwesomeDarkModeToggle.prefersDarkModeInLightModeKey)) ||
|
||||
(DoxygenAwesomeDarkModeToggle.systemPreference && !localStorage.getItem(DoxygenAwesomeDarkModeToggle.prefersLightModeInDarkModeKey))
|
||||
}
|
||||
|
||||
|
||||
+10
-3
@@ -45,6 +45,7 @@ list(APPEND ALL_EXE_SRCS
|
||||
ex37.cpp
|
||||
ex38.cpp
|
||||
ex39.cpp
|
||||
ex40.cpp
|
||||
)
|
||||
|
||||
if (MFEM_USE_MPI)
|
||||
@@ -87,6 +88,7 @@ if (MFEM_USE_MPI)
|
||||
ex36p.cpp
|
||||
ex37p.cpp
|
||||
ex39p.cpp
|
||||
ex40p.cpp
|
||||
)
|
||||
endif()
|
||||
|
||||
@@ -146,10 +148,10 @@ if (MFEM_ENABLE_TESTING)
|
||||
# Add CUDA/HIP tests.
|
||||
set(DEVICE_EXAMPLES
|
||||
# serial examples with device support:
|
||||
ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26 ex34
|
||||
ex1 ex3 ex4 ex5 ex6 ex9 ex14 ex22 ex24 ex25 ex26 ex34
|
||||
# parallel examples with device support:
|
||||
ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p ex24p ex25p ex26p
|
||||
ex34p ex35p)
|
||||
ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex14p ex22p ex24p ex25p
|
||||
ex26p ex34p ex35p)
|
||||
set(MFEM_TEST_DEVICE)
|
||||
if (MFEM_USE_CUDA)
|
||||
set(MFEM_TEST_DEVICE "cuda")
|
||||
@@ -159,6 +161,11 @@ if (MFEM_ENABLE_TESTING)
|
||||
if (MFEM_TEST_DEVICE)
|
||||
foreach(TEST_NAME ${DEVICE_EXAMPLES})
|
||||
set(THIS_TEST_OPTIONS "-no-vis" "-d" "${MFEM_TEST_DEVICE}")
|
||||
if (${TEST_NAME} MATCHES "ex14p")
|
||||
list(APPEND THIS_TEST_OPTIONS "-rs" "2" "-rp" "0" "-pa")
|
||||
elseif (${TEST_NAME} MATCHES "ex14")
|
||||
list(APPEND THIS_TEST_OPTIONS "-r" "2" "-pa")
|
||||
endif()
|
||||
if (NOT (${TEST_NAME} MATCHES ".*p$"))
|
||||
add_test(NAME ${TEST_NAME}_${MFEM_TEST_DEVICE}_ser
|
||||
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
|
||||
|
||||
+1
-4
@@ -646,10 +646,7 @@ real_t HyperelasticOperator::ElasticEnergy(const ParGridFunction &x) const
|
||||
|
||||
real_t HyperelasticOperator::KineticEnergy(const ParGridFunction &v) const
|
||||
{
|
||||
real_t loc_energy = 0.5*M.InnerProduct(v, v);
|
||||
real_t energy;
|
||||
MPI_Allreduce(&loc_energy, &energy, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, fespace.GetComm());
|
||||
real_t energy = 0.5*M.ParInnerProduct(v, v);
|
||||
return energy;
|
||||
}
|
||||
|
||||
|
||||
+78
-54
@@ -18,6 +18,12 @@
|
||||
// ex14 -m ../data/amr-quad.mesh -r 3
|
||||
// ex14 -m ../data/amr-hex.mesh
|
||||
// ex14 -m ../data/fichera-amr.mesh
|
||||
// ex14 -pa -r 1 -o 3
|
||||
// ex14 -pa -r 1 -o 3 -m ../data/fichera.mesh
|
||||
//
|
||||
// Device sample runs:
|
||||
// ex14 -pa -r 2 -d cuda -o 3
|
||||
// ex14 -pa -r 2 -d cuda -o 3 -m ../data/fichera.mesh
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define a
|
||||
// discontinuous Galerkin (DG) finite element discretization of
|
||||
@@ -46,7 +52,9 @@ int main(int argc, char *argv[])
|
||||
real_t sigma = -1.0;
|
||||
real_t kappa = -1.0;
|
||||
real_t eta = 0.0;
|
||||
bool pa = false;
|
||||
bool visualization = 1;
|
||||
const char *device_config = "cpu";
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -62,9 +70,13 @@ int main(int argc, char *argv[])
|
||||
"One of the three DG penalty parameters, should be positive."
|
||||
" Negative values are replaced with (order+1)^2.");
|
||||
args.AddOption(&eta, "-e", "--eta", "BR2 penalty parameter.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
@@ -77,117 +89,129 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// 2. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 3. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral and hexahedral meshes with the same code.
|
||||
// NURBS meshes are projected to second order meshes.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
Mesh mesh(mesh_file);
|
||||
const int dim = mesh.Dimension();
|
||||
|
||||
// 3. Refine the mesh to increase the resolution. In this example we do
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement. By default, or if ref_levels < 0,
|
||||
// we choose it to be the largest number that gives a final mesh with no
|
||||
// more than 50,000 elements.
|
||||
{
|
||||
if (ref_levels < 0)
|
||||
{
|
||||
ref_levels = (int)floor(log(50000./mesh->GetNE())/log(2.)/dim);
|
||||
ref_levels = (int)floor(log(50000./mesh.GetNE())/log(2.)/dim);
|
||||
}
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
}
|
||||
if (mesh->NURBSext)
|
||||
if (mesh.NURBSext)
|
||||
{
|
||||
mesh->SetCurvature(max(order, 1));
|
||||
mesh.SetCurvature(max(order, 1));
|
||||
}
|
||||
|
||||
// 4. Define a finite element space on the mesh. Here we use discontinuous
|
||||
// 5. Define a finite element space on the mesh. Here we use discontinuous
|
||||
// finite elements of the specified order >= 0.
|
||||
FiniteElementCollection *fec = new DG_FECollection(order, dim);
|
||||
FiniteElementSpace *fespace = new FiniteElementSpace(mesh, fec);
|
||||
cout << "Number of unknowns: " << fespace->GetVSize() << endl;
|
||||
const auto bt = pa ? BasisType::GaussLobatto : BasisType::GaussLegendre;
|
||||
DG_FECollection fec(order, dim, bt);
|
||||
FiniteElementSpace fespace(&mesh, &fec);
|
||||
cout << "Number of unknowns: " << fespace.GetVSize() << endl;
|
||||
|
||||
// 5. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// 6. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// the FEM linear system.
|
||||
LinearForm *b = new LinearForm(fespace);
|
||||
LinearForm b(&fespace);
|
||||
ConstantCoefficient one(1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
b->AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b->AddBdrFaceIntegrator(
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b.AddBdrFaceIntegrator(
|
||||
new DGDirichletLFIntegrator(zero, one, sigma, kappa));
|
||||
b->Assemble();
|
||||
b.Assemble();
|
||||
|
||||
// 6. Define the solution vector x as a finite element grid function
|
||||
// 7. Define the solution vector x as a finite element grid function
|
||||
// corresponding to fespace. Initialize x with initial guess of zero.
|
||||
GridFunction x(fespace);
|
||||
GridFunction x(&fespace);
|
||||
x = 0.0;
|
||||
|
||||
// 7. Set up the bilinear form a(.,.) on the finite element space
|
||||
// 8. Set up the bilinear form a(.,.) on the finite element space
|
||||
// corresponding to the Laplacian operator -Delta, by adding the Diffusion
|
||||
// domain integrator and the interior and boundary DG face integrators.
|
||||
// Note that boundary conditions are imposed weakly in the form, so there
|
||||
// is no need for dof elimination. After assembly and finalizing we
|
||||
// extract the corresponding sparse matrix A.
|
||||
BilinearForm *a = new BilinearForm(fespace);
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
a->AddInteriorFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
a->AddBdrFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
BilinearForm a(&fespace);
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
a.AddInteriorFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
a.AddBdrFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
if (eta > 0)
|
||||
{
|
||||
a->AddInteriorFaceIntegrator(new DGDiffusionBR2Integrator(*fespace, eta));
|
||||
a->AddBdrFaceIntegrator(new DGDiffusionBR2Integrator(*fespace, eta));
|
||||
MFEM_VERIFY(!pa, "BR2 not yet compatible with partial assembly.");
|
||||
a.AddInteriorFaceIntegrator(new DGDiffusionBR2Integrator(fespace, eta));
|
||||
a.AddBdrFaceIntegrator(new DGDiffusionBR2Integrator(fespace, eta));
|
||||
}
|
||||
a->Assemble();
|
||||
a->Finalize();
|
||||
const SparseMatrix &A = a->SpMat();
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a.Assemble();
|
||||
a.Finalize();
|
||||
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
// 8. Define a simple symmetric Gauss-Seidel preconditioner and use it to
|
||||
// 9. Define a simple symmetric Gauss-Seidel preconditioner and use it to
|
||||
// solve the system Ax=b with PCG in the symmetric case, and GMRES in the
|
||||
// non-symmetric one.
|
||||
GSSmoother M(A);
|
||||
if (sigma == -1.0)
|
||||
// non-symmetric one. (Note that tolerances are squared: 1e-12 corresponds
|
||||
// to a relative tolerance of 1e-6).
|
||||
//
|
||||
// If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
|
||||
if (pa)
|
||||
{
|
||||
PCG(A, M, *b, x, 1, 500, 1e-12, 0.0);
|
||||
MFEM_VERIFY(sigma == -1.0,
|
||||
"The case of PA with sigma != -1 is not yet supported.");
|
||||
CG(a, b, x, 1, 500, 1e-12, 0.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
GMRES(A, M, *b, x, 1, 500, 10, 1e-12, 0.0);
|
||||
}
|
||||
const SparseMatrix &A = a.SpMat();
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
GSSmoother M(A);
|
||||
if (sigma == -1.0)
|
||||
{
|
||||
PCG(A, M, b, x, 1, 500, 1e-12, 0.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
GMRES(A, M, b, x, 1, 500, 10, 1e-12, 0.0);
|
||||
}
|
||||
#else
|
||||
// 8. If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
|
||||
UMFPackSolver umf_solver;
|
||||
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
umf_solver.SetOperator(A);
|
||||
umf_solver.Mult(*b, x);
|
||||
UMFPackSolver umf_solver;
|
||||
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
umf_solver.SetOperator(A);
|
||||
umf_solver.Mult(b, x);
|
||||
#endif
|
||||
}
|
||||
|
||||
// 9. Save the refined mesh and the solution. This output can be viewed later
|
||||
// using GLVis: "glvis -m refined.mesh -g sol.gf".
|
||||
// 10. Save the refined mesh and the solution. This output can be viewed
|
||||
// later using GLVis: "glvis -m refined.mesh -g sol.gf".
|
||||
ofstream mesh_ofs("refined.mesh");
|
||||
mesh_ofs.precision(8);
|
||||
mesh->Print(mesh_ofs);
|
||||
mesh.Print(mesh_ofs);
|
||||
ofstream sol_ofs("sol.gf");
|
||||
sol_ofs.precision(8);
|
||||
x.Save(sol_ofs);
|
||||
|
||||
// 10. Send the solution by socket to a GLVis server.
|
||||
// 11. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << *mesh << x << flush;
|
||||
sol_sock << "solution\n" << mesh << x << flush;
|
||||
}
|
||||
|
||||
// 11. Free the used memory.
|
||||
delete a;
|
||||
delete b;
|
||||
delete fespace;
|
||||
delete fec;
|
||||
delete mesh;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
+90
-82
@@ -17,6 +17,12 @@
|
||||
// mpirun -np 4 ex14p -m ../data/inline-segment.mesh -rs 5
|
||||
// mpirun -np 4 ex14p -m ../data/amr-quad.mesh -rs 3
|
||||
// mpirun -np 4 ex14p -m ../data/amr-hex.mesh
|
||||
// mpirun -np 4 ex14p -pa -rs 1 -rp 0 -o 3
|
||||
// mpirun -np 4 ex14p -pa -rs 1 -rp 0 -m ../data/fichera.mesh -o 3
|
||||
//
|
||||
// Device sample runs:
|
||||
// mpirun -np 4 ex14p -pa -rs 2 -rp 0 -d cuda -o 3
|
||||
// mpirun -np 4 ex14p -pa -rs 2 -rp 0 -d cuda -m ../data/fichera.mesh -o 3
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define a
|
||||
// discontinuous Galerkin (DG) finite element discretization of
|
||||
@@ -38,11 +44,14 @@ using namespace mfem;
|
||||
|
||||
class CustomSolverMonitor : public IterativeSolverMonitor
|
||||
{
|
||||
private:
|
||||
const ParMesh &pmesh;
|
||||
ParGridFunction &pgf;
|
||||
public:
|
||||
CustomSolverMonitor(const ParMesh *m,
|
||||
ParGridFunction *f) :
|
||||
pmesh(m),
|
||||
pgf(f) {}
|
||||
CustomSolverMonitor(const ParMesh &pmesh_,
|
||||
ParGridFunction &pgf_) :
|
||||
pmesh(pmesh_),
|
||||
pgf(pgf_) {}
|
||||
|
||||
void MonitorSolution(int i, real_t norm, const Vector &x, bool final)
|
||||
{
|
||||
@@ -50,30 +59,24 @@ public:
|
||||
int visport = 19916;
|
||||
int num_procs, myid;
|
||||
|
||||
MPI_Comm_size(pmesh->GetComm(),&num_procs);
|
||||
MPI_Comm_rank(pmesh->GetComm(),&myid);
|
||||
MPI_Comm_size(pmesh.GetComm(), &num_procs);
|
||||
MPI_Comm_rank(pmesh.GetComm(), &myid);
|
||||
|
||||
pgf->SetFromTrueDofs(x);
|
||||
pgf.SetFromTrueDofs(x);
|
||||
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << *pmesh << *pgf
|
||||
sol_sock << "solution\n" << pmesh << pgf
|
||||
<< "window_title 'Iteration no " << i << "'"
|
||||
<< "keys rRjlc\n" << flush;
|
||||
}
|
||||
|
||||
private:
|
||||
const ParMesh *pmesh;
|
||||
ParGridFunction *pgf;
|
||||
};
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Initialize MPI and HYPRE.
|
||||
Mpi::Init(argc, argv);
|
||||
int num_procs = Mpi::WorldSize();
|
||||
int myid = Mpi::WorldRank();
|
||||
Hypre::Init();
|
||||
|
||||
// 2. Parse command-line options.
|
||||
@@ -84,7 +87,9 @@ int main(int argc, char *argv[])
|
||||
real_t sigma = -1.0;
|
||||
real_t kappa = -1.0;
|
||||
real_t eta = 0.0;
|
||||
bool pa = false;
|
||||
bool visualization = 1;
|
||||
const char *device_config = "cpu";
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -103,13 +108,17 @@ int main(int argc, char *argv[])
|
||||
"One of the three DG penalty parameters, should be positive."
|
||||
" Negative values are replaced with (order+1)^2.");
|
||||
args.AddOption(&eta, "-e", "--eta", "BR2 penalty parameter.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
if (myid == 0)
|
||||
if (Mpi::Root())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
}
|
||||
@@ -119,16 +128,19 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
kappa = (order+1)*(order+1);
|
||||
}
|
||||
if (myid == 0)
|
||||
if (Mpi::Root())
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
Device device(device_config);
|
||||
if (Mpi::Root()) { device.Print(); }
|
||||
|
||||
// 3. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral and hexahedral meshes
|
||||
// with the same code. NURBS meshes are projected to second order meshes.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
Mesh mesh(mesh_file);
|
||||
int dim = mesh.Dimension();
|
||||
|
||||
// 4. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// this example we do 'ser_ref_levels' of uniform refinement. By default,
|
||||
@@ -137,53 +149,54 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
if (ser_ref_levels < 0)
|
||||
{
|
||||
ser_ref_levels = (int)floor(log(10000./mesh->GetNE())/log(2.)/dim);
|
||||
ser_ref_levels = (int)floor(log(10000./mesh.GetNE())/log(2.)/dim);
|
||||
}
|
||||
for (int l = 0; l < ser_ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
}
|
||||
if (mesh->NURBSext)
|
||||
if (mesh.NURBSext)
|
||||
{
|
||||
mesh->SetCurvature(max(order, 1));
|
||||
mesh.SetCurvature(max(order, 1));
|
||||
}
|
||||
|
||||
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
delete mesh;
|
||||
ParMesh pmesh(MPI_COMM_WORLD, mesh);
|
||||
mesh.Clear();
|
||||
{
|
||||
for (int l = 0; l < par_ref_levels; l++)
|
||||
{
|
||||
pmesh->UniformRefinement();
|
||||
pmesh.UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 6. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use discontinuous finite elements of the specified order >= 0.
|
||||
FiniteElementCollection *fec = new DG_FECollection(order, dim);
|
||||
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
|
||||
HYPRE_BigInt size = fespace->GlobalTrueVSize();
|
||||
if (myid == 0)
|
||||
const auto bt = pa ? BasisType::GaussLobatto : BasisType::GaussLegendre;
|
||||
DG_FECollection fec(order, dim, bt);
|
||||
ParFiniteElementSpace fespace(&pmesh, &fec);
|
||||
HYPRE_BigInt size = fespace.GlobalTrueVSize();
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "Number of unknowns: " << size << endl;
|
||||
}
|
||||
|
||||
// 7. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system.
|
||||
ParLinearForm *b = new ParLinearForm(fespace);
|
||||
ParLinearForm b(&fespace);
|
||||
ConstantCoefficient one(1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
b->AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b->AddBdrFaceIntegrator(
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b.AddBdrFaceIntegrator(
|
||||
new DGDirichletLFIntegrator(zero, one, sigma, kappa));
|
||||
b->Assemble();
|
||||
b.Assemble();
|
||||
|
||||
// 8. Define the solution vector x as a parallel finite element grid function
|
||||
// corresponding to fespace. Initialize x with initial guess of zero.
|
||||
ParGridFunction x(fespace);
|
||||
ParGridFunction x(&fespace);
|
||||
x = 0.0;
|
||||
|
||||
// 9. Set up the bilinear form a(.,.) on the finite element space
|
||||
@@ -192,42 +205,51 @@ int main(int argc, char *argv[])
|
||||
// Note that boundary conditions are imposed weakly in the form, so there
|
||||
// is no need for dof elimination. After serial and parallel assembly we
|
||||
// extract the corresponding parallel matrix A.
|
||||
ParBilinearForm *a = new ParBilinearForm(fespace);
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
a->AddInteriorFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
a->AddBdrFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
ParBilinearForm a(&fespace);
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
a.AddInteriorFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
a.AddBdrFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
if (eta > 0)
|
||||
{
|
||||
a->AddInteriorFaceIntegrator(new DGDiffusionBR2Integrator(*fespace, eta));
|
||||
a->AddBdrFaceIntegrator(new DGDiffusionBR2Integrator(*fespace, eta));
|
||||
MFEM_VERIFY(!pa, "BR2 not yet compatible with partial assembly.");
|
||||
a.AddInteriorFaceIntegrator(new DGDiffusionBR2Integrator(fespace, eta));
|
||||
a.AddBdrFaceIntegrator(new DGDiffusionBR2Integrator(fespace, eta));
|
||||
}
|
||||
a->Assemble();
|
||||
a->Finalize();
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a.Assemble();
|
||||
a.Finalize();
|
||||
|
||||
// 10. Define the parallel (hypre) matrix and vectors representing a(.,.),
|
||||
// b(.) and the finite element approximation.
|
||||
HypreParMatrix *A = a->ParallelAssemble();
|
||||
HypreParVector *B = b->ParallelAssemble();
|
||||
HypreParVector *X = x.ParallelProject();
|
||||
OperatorHandle A;
|
||||
|
||||
delete a;
|
||||
delete b;
|
||||
|
||||
// 11. Depending on the symmetry of A, define and apply a parallel PCG or
|
||||
// GMRES solver for AX=B using the BoomerAMG preconditioner from hypre.
|
||||
HypreSolver *amg = new HypreBoomerAMG(*A);
|
||||
if (sigma == -1.0)
|
||||
std::unique_ptr<HypreBoomerAMG> amg;
|
||||
if (pa)
|
||||
{
|
||||
HyprePCG pcg(*A);
|
||||
pcg.SetTol(1e-12);
|
||||
pcg.SetMaxIter(500);
|
||||
pcg.SetPrintLevel(2);
|
||||
pcg.SetPreconditioner(*amg);
|
||||
pcg.Mult(*B, *X);
|
||||
A.Reset(&a, false);
|
||||
}
|
||||
else
|
||||
{
|
||||
CustomSolverMonitor monitor(pmesh, &x);
|
||||
A.SetType(Operator::Hypre_ParCSR);
|
||||
a.ParallelAssemble(A);
|
||||
amg.reset(new HypreBoomerAMG(*A.As<HypreParMatrix>()));
|
||||
}
|
||||
|
||||
// 11. Depending on the symmetry of A, define and apply a parallel PCG or
|
||||
// GMRES solver for AX=B using the BoomerAMG preconditioner from hypre.
|
||||
if (sigma == -1.0)
|
||||
{
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(500);
|
||||
cg.SetPrintLevel(1);
|
||||
cg.SetOperator(*A);
|
||||
if (amg) { cg.SetPreconditioner(*amg); }
|
||||
cg.Mult(b, x);
|
||||
}
|
||||
else
|
||||
{
|
||||
CustomSolverMonitor monitor(pmesh, x);
|
||||
GMRESSolver gmres(MPI_COMM_WORLD);
|
||||
gmres.SetAbsTol(0.0);
|
||||
gmres.SetRelTol(1e-12);
|
||||
@@ -235,51 +257,37 @@ int main(int argc, char *argv[])
|
||||
gmres.SetKDim(10);
|
||||
gmres.SetPrintLevel(1);
|
||||
gmres.SetOperator(*A);
|
||||
gmres.SetPreconditioner(*amg);
|
||||
if (amg) { gmres.SetPreconditioner(*amg); }
|
||||
gmres.SetMonitor(monitor);
|
||||
gmres.Mult(*B, *X);
|
||||
gmres.Mult(b, x);
|
||||
}
|
||||
delete amg;
|
||||
|
||||
// 12. Extract the parallel grid function corresponding to the finite element
|
||||
// approximation X. This is the local solution on each processor.
|
||||
x = *X;
|
||||
|
||||
// 13. Save the refined mesh and the solution in parallel. This output can
|
||||
// 12. Save the refined mesh and the solution in parallel. This output can
|
||||
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
|
||||
{
|
||||
ostringstream mesh_name, sol_name;
|
||||
mesh_name << "mesh." << setfill('0') << setw(6) << myid;
|
||||
sol_name << "sol." << setfill('0') << setw(6) << myid;
|
||||
mesh_name << "mesh." << setfill('0') << setw(6) << Mpi::WorldRank();
|
||||
sol_name << "sol." << setfill('0') << setw(6) << Mpi::WorldRank();
|
||||
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(8);
|
||||
pmesh->Print(mesh_ofs);
|
||||
pmesh.Print(mesh_ofs);
|
||||
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(8);
|
||||
x.Save(sol_ofs);
|
||||
}
|
||||
|
||||
// 14. Send the solution by socket to a GLVis server.
|
||||
// 13. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock << "parallel " << Mpi::WorldSize() << " " << Mpi::WorldRank() << "\n";
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << *pmesh << x << flush;
|
||||
sol_sock << "solution\n" << pmesh << x << flush;
|
||||
}
|
||||
|
||||
// 15. Free the used memory.
|
||||
delete X;
|
||||
delete B;
|
||||
delete A;
|
||||
|
||||
delete fespace;
|
||||
delete fec;
|
||||
delete pmesh;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
+4
-4
@@ -39,8 +39,8 @@ private:
|
||||
// Base Nonlinear Form
|
||||
std::unique_ptr<NonlinearForm> nonlinearForm;
|
||||
// element-wise inverse mass matrix
|
||||
std::vector<DenseMatrix> invmass; // local scalar inverse mass.
|
||||
std::vector<DenseMatrix> weakdiv; // local weakdivergence. Trial space is ByDim.
|
||||
std::vector<DenseMatrix> invmass; // local scalar inverse mass
|
||||
std::vector<DenseMatrix> weakdiv; // local weak divergence (trial space ByDim)
|
||||
// global maximum characteristic speed. Updated by form integrators
|
||||
mutable real_t max_char_speed;
|
||||
// auxiliary variable used in Mult
|
||||
@@ -169,9 +169,9 @@ void DGHyperbolicConservationLaws::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
// 0. Reset wavespeed computation before operator application.
|
||||
formIntegrator->ResetMaxCharSpeed();
|
||||
// 1. Apply Nonlinear form to obtain an axiliary result
|
||||
// 1. Apply Nonlinear form to obtain an auxiliary result
|
||||
// z = - <F̂(u_h,n), [[v]]>_e
|
||||
// If weak-divergencee is not preassembled, we also have weak-divergence
|
||||
// If weak-divergence is not preassembled, we also have weak-divergence
|
||||
// z = - <F̂(u_h,n), [[v]]>_e + (F(u_h), ∇v)
|
||||
nonlinearForm->Mult(x, z);
|
||||
if (!weakdiv.empty()) // if weak divergence is pre-assembled
|
||||
|
||||
+16
-20
@@ -44,7 +44,7 @@ protected:
|
||||
BilinearForm *M;
|
||||
BilinearForm *K;
|
||||
|
||||
SparseMatrix Mmat, Kmat, Kmat0;
|
||||
SparseMatrix Mmat, Kmat;
|
||||
SparseMatrix *T; // T = M + dt K
|
||||
real_t current_dt;
|
||||
|
||||
@@ -83,25 +83,24 @@ WaveOperator::WaveOperator(FiniteElementSpace &f,
|
||||
: SecondOrderTimeDependentOperator(f.GetTrueVSize(), (real_t) 0.0),
|
||||
fespace(f), M(NULL), K(NULL), T(NULL), current_dt(0.0), z(height)
|
||||
{
|
||||
const real_t rel_tol = 1e-8;
|
||||
|
||||
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
|
||||
// Assemble Laplace matrix
|
||||
c2 = new ConstantCoefficient(speed*speed);
|
||||
|
||||
K = new BilinearForm(&fespace);
|
||||
K->AddDomainIntegrator(new DiffusionIntegrator(*c2));
|
||||
K->Assemble();
|
||||
|
||||
Array<int> dummy;
|
||||
K->FormSystemMatrix(dummy, Kmat0);
|
||||
K->FormSystemMatrix(ess_tdof_list, Kmat);
|
||||
|
||||
// Assemble Mass matrix
|
||||
M = new BilinearForm(&fespace);
|
||||
M->AddDomainIntegrator(new MassIntegrator());
|
||||
M->Assemble();
|
||||
|
||||
// Apply Bcs
|
||||
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
K->FormSystemMatrix(ess_tdof_list, Kmat);
|
||||
M->FormSystemMatrix(ess_tdof_list, Mmat);
|
||||
|
||||
// Configure preconditioner
|
||||
const real_t rel_tol = 1e-8;
|
||||
M_solver.iterative_mode = false;
|
||||
M_solver.SetRelTol(rel_tol);
|
||||
M_solver.SetAbsTol(0.0);
|
||||
@@ -110,14 +109,13 @@ WaveOperator::WaveOperator(FiniteElementSpace &f,
|
||||
M_solver.SetPreconditioner(M_prec);
|
||||
M_solver.SetOperator(Mmat);
|
||||
|
||||
// Configure solver
|
||||
T_solver.iterative_mode = false;
|
||||
T_solver.SetRelTol(rel_tol);
|
||||
T_solver.SetAbsTol(0.0);
|
||||
T_solver.SetMaxIter(100);
|
||||
T_solver.SetPrintLevel(0);
|
||||
T_solver.SetPreconditioner(T_prec);
|
||||
|
||||
T = NULL;
|
||||
}
|
||||
|
||||
void WaveOperator::Mult(const Vector &u, const Vector &du_dt,
|
||||
@@ -126,9 +124,11 @@ void WaveOperator::Mult(const Vector &u, const Vector &du_dt,
|
||||
// Compute:
|
||||
// d2udt2 = M^{-1}*-K(u)
|
||||
// for d2udt2
|
||||
Kmat.Mult(u, z);
|
||||
K->FullMult(u, z);
|
||||
z.Neg(); // z = -z
|
||||
z.SetSubVector(ess_tdof_list, 0.0);
|
||||
M_solver.Mult(z, d2udt2);
|
||||
d2udt2.SetSubVector(ess_tdof_list, 0.0);
|
||||
}
|
||||
|
||||
void WaveOperator::ImplicitSolve(const real_t fac0, const real_t fac1,
|
||||
@@ -142,14 +142,11 @@ void WaveOperator::ImplicitSolve(const real_t fac0, const real_t fac1,
|
||||
T = Add(1.0, Mmat, fac0, Kmat);
|
||||
T_solver.SetOperator(*T);
|
||||
}
|
||||
Kmat0.Mult(u, z);
|
||||
K->FullMult(u, z);
|
||||
z.Neg();
|
||||
|
||||
for (int i = 0; i < ess_tdof_list.Size(); i++)
|
||||
{
|
||||
z[ess_tdof_list[i]] = 0.0;
|
||||
}
|
||||
z.SetSubVector(ess_tdof_list, 0.0);
|
||||
T_solver.Mult(z, d2udt2);
|
||||
d2udt2.SetSubVector(ess_tdof_list, 0.0);
|
||||
}
|
||||
|
||||
void WaveOperator::SetParameters(const Vector &u)
|
||||
@@ -314,7 +311,6 @@ int main(int argc, char *argv[])
|
||||
ess_bdr = 0;
|
||||
}
|
||||
}
|
||||
|
||||
WaveOperator oper(fespace, ess_bdr, speed);
|
||||
|
||||
u_gf.SetFromTrueDofs(u);
|
||||
|
||||
+16
-12
@@ -19,8 +19,11 @@
|
||||
// ex33 -m ../data/amr-quad.mesh -ver -alpha 2.6 -o 2 -r 2
|
||||
// ex33 -m ../data/inline-hex.mesh -ver -alpha 0.3 -o 2 -r 1
|
||||
//
|
||||
// Note: the analytic solution to this problem is u = ∏_{i=0}^{dim-1} sin(π x_i)
|
||||
// for all alpha.
|
||||
// Note: The manufactured solution used in this problem is
|
||||
//
|
||||
// u = ∏_{i=0}^{dim-1} sin(π x_i) ,
|
||||
//
|
||||
// regardless of the value of alpha.
|
||||
//
|
||||
// Description:
|
||||
//
|
||||
@@ -114,7 +117,8 @@ int main(int argc, char *argv[])
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&verification, "-ver", "--verification", "-no-ver",
|
||||
"--no-verification",
|
||||
"Use sinusoidal function (f) for analytic comparison.");
|
||||
"Use sinusoidal function (f) for manufactured "
|
||||
"solution test.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
@@ -163,7 +167,7 @@ int main(int argc, char *argv[])
|
||||
// 5. Define a finite element space on the mesh.
|
||||
H1_FECollection fec(order, dim);
|
||||
FiniteElementSpace fespace(&mesh, &fec);
|
||||
cout << "Number of finite element unknowns: "
|
||||
cout << "Number of degrees of freedom: "
|
||||
<< fespace.GetTrueVSize() << endl;
|
||||
|
||||
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
@@ -379,29 +383,29 @@ int main(int argc, char *argv[])
|
||||
FunctionCoefficient sol(solution);
|
||||
real_t l2_error = u.ComputeL2Error(sol);
|
||||
|
||||
string analytic_solution,expected_mesh;
|
||||
string manufactured_solution,expected_mesh;
|
||||
switch (dim)
|
||||
{
|
||||
case 1:
|
||||
analytic_solution = "sin(π x)";
|
||||
manufactured_solution = "sin(π x)";
|
||||
expected_mesh = "inline_segment.mesh";
|
||||
break;
|
||||
case 2:
|
||||
analytic_solution = "sin(π x) sin(π y)";
|
||||
manufactured_solution = "sin(π x) sin(π y)";
|
||||
expected_mesh = "inline_quad.mesh";
|
||||
break;
|
||||
default:
|
||||
analytic_solution = "sin(π x) sin(π y) sin(π z)";
|
||||
manufactured_solution = "sin(π x) sin(π y) sin(π z)";
|
||||
expected_mesh = "inline_hex.mesh";
|
||||
break;
|
||||
}
|
||||
|
||||
mfem::out << "\n" << string(80,'=')
|
||||
<< "\n\nSolution Verification in "<< dim << "D \n\n"
|
||||
<< "Analytic solution : " << analytic_solution << "\n"
|
||||
<< "Expected mesh : " << expected_mesh <<"\n"
|
||||
<< "Your mesh : " << mesh_file << "\n"
|
||||
<< "L2 error : " << l2_error << "\n\n"
|
||||
<< "Manufactured solution : " << manufactured_solution << "\n"
|
||||
<< "Expected mesh : " << expected_mesh <<"\n"
|
||||
<< "Your mesh : " << mesh_file << "\n"
|
||||
<< "L2 error : " << l2_error << "\n\n"
|
||||
<< string(80,'=') << endl;
|
||||
}
|
||||
|
||||
|
||||
+4
-2
@@ -131,7 +131,7 @@ void RationalApproximation_AAA(const Vector &val, const Vector &pt,
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
DenseMatrixSVD svd(Am,false,true);
|
||||
DenseMatrixSVD svd(Am,'N','A');
|
||||
svd.Eval(Am);
|
||||
DenseMatrix &v = svd.RightSingularvectors();
|
||||
v.GetRow(k,w);
|
||||
@@ -346,7 +346,7 @@ void ComputePartialFractionApproximation(real_t & alpha,
|
||||
}
|
||||
else
|
||||
{
|
||||
if (abs(alpha - 0.5) > eps && print_warning)
|
||||
if (abs(alpha - 0.5) > eps)
|
||||
{
|
||||
alpha = 0.5;
|
||||
}
|
||||
@@ -368,6 +368,8 @@ void ComputePartialFractionApproximation(real_t & alpha,
|
||||
|
||||
|
||||
return;
|
||||
#else
|
||||
MFEM_CONTRACT_VAR(print_warning);
|
||||
#endif
|
||||
|
||||
Vector x(npoints);
|
||||
|
||||
+19
-14
@@ -19,8 +19,11 @@
|
||||
// mpirun -np 4 ex33p -m ../data/amr-quad.mesh -ver -alpha 2.6 -o 2 -r 2
|
||||
// mpirun -np 4 ex33p -m ../data/inline-hex.mesh -ver -alpha 0.3 -o 2 -r 1
|
||||
|
||||
// Note: the analytic solution to this problem is u = ∏_{i=0}^{dim-1} sin(π x_i)
|
||||
// for all alpha.
|
||||
// Note: The manufactured solution used in this problem is
|
||||
//
|
||||
// u = ∏_{i=0}^{dim-1} sin(π x_i) ,
|
||||
//
|
||||
// regardless of the value of alpha.
|
||||
//
|
||||
// Description:
|
||||
//
|
||||
@@ -120,7 +123,8 @@ int main(int argc, char *argv[])
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&verification, "-ver", "--verification", "-no-ver",
|
||||
"--no-verification",
|
||||
"Use sinusoidal function (f) for analytic comparison.");
|
||||
"Use sinusoidal function (f) for manufactured "
|
||||
"solution test.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
@@ -180,10 +184,11 @@ int main(int argc, char *argv[])
|
||||
// 5. Define a finite element space on the mesh.
|
||||
H1_FECollection fec(order, dim);
|
||||
ParFiniteElementSpace fespace(&pmesh, &fec);
|
||||
HYPRE_BigInt size = fespace.GlobalTrueVSize();
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "Number of finite element unknowns: "
|
||||
<< fespace.GetTrueVSize() << endl;
|
||||
cout << "Number of degrees of freedom: "
|
||||
<< size << endl;
|
||||
}
|
||||
|
||||
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
@@ -223,7 +228,7 @@ int main(int argc, char *argv[])
|
||||
if (verification)
|
||||
{
|
||||
// This statement is only relevant for the verification of the code. It
|
||||
// uses a different f such that an analytic solution is known and easy
|
||||
// uses a different f such that an manufactured solution is known and easy
|
||||
// to compare with the numerical one. The FPDE becomes:
|
||||
// (-Δ)^α u = (2\pi ^2)^α sin(\pi x) sin(\pi y) on [0,1]^2
|
||||
// -> u(x,y) = sin(\pi x) sin(\pi y)
|
||||
@@ -415,29 +420,29 @@ int main(int argc, char *argv[])
|
||||
|
||||
if (Mpi::Root())
|
||||
{
|
||||
string analytic_solution,expected_mesh;
|
||||
string manufactured_solution,expected_mesh;
|
||||
switch (dim)
|
||||
{
|
||||
case 1:
|
||||
analytic_solution = "sin(π x)";
|
||||
manufactured_solution = "sin(π x)";
|
||||
expected_mesh = "inline_segment.mesh";
|
||||
break;
|
||||
case 2:
|
||||
analytic_solution = "sin(π x) sin(π y)";
|
||||
manufactured_solution = "sin(π x) sin(π y)";
|
||||
expected_mesh = "inline_quad.mesh";
|
||||
break;
|
||||
default:
|
||||
analytic_solution = "sin(π x) sin(π y) sin(π z)";
|
||||
manufactured_solution = "sin(π x) sin(π y) sin(π z)";
|
||||
expected_mesh = "inline_hex.mesh";
|
||||
break;
|
||||
}
|
||||
|
||||
mfem::out << "\n" << string(80,'=')
|
||||
<< "\n\nSolution Verification in "<< dim << "D \n\n"
|
||||
<< "Analytic solution : " << analytic_solution << "\n"
|
||||
<< "Expected mesh : " << expected_mesh <<"\n"
|
||||
<< "Your mesh : " << mesh_file << "\n"
|
||||
<< "L2 error : " << l2_error << "\n\n"
|
||||
<< "Manufactured solution : " << manufactured_solution << "\n"
|
||||
<< "Expected mesh : " << expected_mesh <<"\n"
|
||||
<< "Your mesh : " << mesh_file << "\n"
|
||||
<< "L2 error : " << l2_error << "\n\n"
|
||||
<< string(80,'=') << endl;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -199,7 +199,6 @@ public:
|
||||
{
|
||||
mesh->GetElementTransformation(elem, &Tr);
|
||||
MFIRs.GetSurfaceIntegrationRule(Tr, ir);
|
||||
Vector w;
|
||||
MFIRs.GetSurfaceWeights(Tr, ir, w);
|
||||
SurfaceWeights.SetCol(elem, w);
|
||||
|
||||
|
||||
@@ -0,0 +1,374 @@
|
||||
// MFEM Example 40
|
||||
//
|
||||
// Compile with: make ex40
|
||||
//
|
||||
// Sample runs: ex40 -step 10 -gr 2.0
|
||||
// ex40 -step 10 -gr 2.0 -o 3 -r 1
|
||||
// ex40 -step 10 -gr 2.0 -r 4 -m ../data/l-shape.mesh
|
||||
// ex40 -step 10 -gr 2.0 -r 2 -m ../data/fichera.mesh
|
||||
//
|
||||
// Description: This example code demonstrates how to use MFEM to solve the
|
||||
// eikonal equation,
|
||||
//
|
||||
// |∇𝑢| = 1 in Ω, 𝑢 = g on ∂Ω.
|
||||
//
|
||||
// The solution of this problem coincides with the unique optimum of
|
||||
// the nonlinear program
|
||||
//
|
||||
// maximize ∫_Ω 𝑢 d𝑥 subject to |∇𝑢| ≤ 1, 𝑢 = g on Ω, (⋆)
|
||||
//
|
||||
// which is the foundation for method implemented below.
|
||||
//
|
||||
// Following the proximal Galerkin methodology [1] (see also Example
|
||||
// 36), we construct a Legendre function for the unit ball
|
||||
// 𝐵₁ := {𝑥 ∈ Rⁿ | |𝑥| < 1}. Our choice is the Hellinger entropy,
|
||||
//
|
||||
// h(𝑥) = −( 1 − |𝑥|² )^{1/2},
|
||||
//
|
||||
// although other choices are possible, each leading to a slightly
|
||||
// different algorithm. We then adaptively regularize the optimization
|
||||
// problem (⋆) with the Bregman divergence of the Hellinger entropy,
|
||||
//
|
||||
// maximize ∫_Ω 𝑢 d𝑥 - αₖ⁻¹ Dₕ(∇𝑢,∇𝑢ₖ₋₁) subject to 𝑢 = g on Ω.
|
||||
//
|
||||
// This results in a sequence of functions ( 𝜓ₖ , 𝑢ₖ ),
|
||||
//
|
||||
// 𝑢ₖ → 𝑢, 𝜓ₖ/|𝜓ₖ| → ∇𝑢 as k → \infty,
|
||||
//
|
||||
// defined by the nonlinear saddle-point problems
|
||||
//
|
||||
// Find 𝜓ₖ ∈ H(div,Ω) and 𝑢ₖ ∈ L²(Ω) such that
|
||||
// ( Zₖ(𝜓ₖ) , τ ) + ( 𝑢ₖ , ∇⋅τ ) = ⟨ g , τ⋅n ⟩ ∀ τ ∈ H(div,Ω)
|
||||
// ( ∇⋅𝜓ₖ , v ) = ( ∇⋅𝜓ₖ₋₁ - 1 , v ) ∀ v ∈ L²(Ω)
|
||||
//
|
||||
// where Zₖ(𝜓) := ∇h⁻¹(αₖ 𝜓) = 𝜓 / ( αₖ⁻² + |𝜓|² )^{1/2} and step size
|
||||
// αₖ > 0. These saddle-point problems are solved using a damped Newton's
|
||||
// method. This example assumes that g = 0 and allows the step size to
|
||||
// grow geometrically, αₖ = α₀rᵏ, where r ≥ 1 is the growth rate.
|
||||
//
|
||||
// [1] Keith, B. and Surowiec, T. (2023) Proximal Galerkin: A structure-
|
||||
// preserving finite element method for pointwise bound constraints.
|
||||
// arXiv:2307.12444 [math.NA]
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
class ZCoefficient : public VectorCoefficient
|
||||
{
|
||||
protected:
|
||||
GridFunction *psi;
|
||||
real_t alpha;
|
||||
|
||||
public:
|
||||
ZCoefficient(int vdim, GridFunction &psi_, real_t alpha_ = 1.0)
|
||||
: VectorCoefficient(vdim), psi(&psi_), alpha(alpha_) { }
|
||||
|
||||
virtual void Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
void SetAlpha(real_t alpha_) { alpha = alpha_; }
|
||||
};
|
||||
|
||||
class DZCoefficient : public MatrixCoefficient
|
||||
{
|
||||
protected:
|
||||
GridFunction *psi;
|
||||
real_t alpha;
|
||||
|
||||
public:
|
||||
DZCoefficient(int height, GridFunction &psi_, real_t alpha_ = 1.0)
|
||||
: MatrixCoefficient(height), psi(&psi_), alpha(alpha_) { }
|
||||
|
||||
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
void SetAlpha(real_t alpha_) { alpha = alpha_; }
|
||||
};
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command-line options.
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
int max_it = 5;
|
||||
int ref_levels = 3;
|
||||
real_t alpha = 1.0;
|
||||
real_t growth_rate = 1.0;
|
||||
real_t newton_scaling = 0.9;
|
||||
real_t tichonov = 1e-1;
|
||||
real_t tol = 1e-4;
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&ref_levels, "-r", "--refs",
|
||||
"Number of h-refinements.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
"Maximum number of iterations");
|
||||
args.AddOption(&tol, "-tol", "--tol",
|
||||
"Stopping criteria based on the difference between"
|
||||
"successive solution updates");
|
||||
args.AddOption(&alpha, "-step", "--step",
|
||||
"Initial size alpha");
|
||||
args.AddOption(&growth_rate, "-gr", "--growth-rate",
|
||||
"Growth rate of the step size alpha");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// 2. Read the mesh from the mesh file.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
int sdim = mesh.SpaceDimension();
|
||||
|
||||
MFEM_ASSERT(mesh.bdr_attributes.Size(),
|
||||
"This example does not currently support meshes"
|
||||
" without boundary attributes."
|
||||
)
|
||||
|
||||
// 3. Postprocess the mesh.
|
||||
// 3A. Refine the mesh to increase the resolution.
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 3B. Interpolate the geometry after refinement to control geometry error.
|
||||
// NOTE: Minimum second-order interpolation is used to improve the accuracy.
|
||||
int curvature_order = max(order,2);
|
||||
mesh.SetCurvature(curvature_order);
|
||||
|
||||
// 4. Define the necessary finite element spaces on the mesh.
|
||||
RT_FECollection RTfec(order, dim);
|
||||
FiniteElementSpace RTfes(&mesh, &RTfec);
|
||||
|
||||
L2_FECollection L2fec(order, dim);
|
||||
FiniteElementSpace L2fes(&mesh, &L2fec);
|
||||
|
||||
cout << "Number of H(div) dofs: "
|
||||
<< RTfes.GetTrueVSize() << endl;
|
||||
cout << "Number of L² dofs: "
|
||||
<< L2fes.GetTrueVSize() << endl;
|
||||
|
||||
// 5. Define the offsets for the block matrices
|
||||
Array<int> offsets(3);
|
||||
offsets[0] = 0;
|
||||
offsets[1] = RTfes.GetVSize();
|
||||
offsets[2] = L2fes.GetVSize();
|
||||
offsets.PartialSum();
|
||||
|
||||
BlockVector x(offsets), rhs(offsets);
|
||||
x = 0.0; rhs = 0.0;
|
||||
|
||||
// 6. Define the solution vectors as a finite element grid functions
|
||||
// corresponding to the fespaces.
|
||||
GridFunction u_gf, delta_psi_gf;
|
||||
delta_psi_gf.MakeRef(&RTfes,x,offsets[0]);
|
||||
u_gf.MakeRef(&L2fes,x,offsets[1]);
|
||||
|
||||
GridFunction psi_old_gf(&RTfes);
|
||||
GridFunction psi_gf(&RTfes);
|
||||
GridFunction u_old_gf(&L2fes);
|
||||
|
||||
// 7. Define initial guesses for the solution variables.
|
||||
delta_psi_gf = 0.0;
|
||||
psi_gf = 0.0;
|
||||
u_gf = 0.0;
|
||||
psi_old_gf = psi_gf;
|
||||
u_old_gf = u_gf;
|
||||
|
||||
// 8. Prepare for glvis output.
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock;
|
||||
if (visualization)
|
||||
{
|
||||
sol_sock.open(vishost,visport);
|
||||
sol_sock.precision(8);
|
||||
}
|
||||
|
||||
// 9. Coefficients to be used later.
|
||||
ConstantCoefficient neg_one(-1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
ConstantCoefficient tichonov_cf(tichonov);
|
||||
ConstantCoefficient neg_tichonov_cf(-1.0*tichonov);
|
||||
ZCoefficient Z(sdim, psi_gf, alpha);
|
||||
DZCoefficient DZ(sdim, psi_gf, alpha);
|
||||
ScalarVectorProductCoefficient neg_Z(-1.0, Z);
|
||||
DivergenceGridFunctionCoefficient div_psi_cf(&psi_gf);
|
||||
DivergenceGridFunctionCoefficient div_psi_old_cf(&psi_old_gf);
|
||||
SumCoefficient psi_old_minus_psi(div_psi_old_cf, div_psi_cf, 1.0, -1.0);
|
||||
|
||||
// 10. Assemble constant matrices/vectors to avoid reassembly in the loop.
|
||||
LinearForm b0, b1;
|
||||
b0.MakeRef(&RTfes,rhs.GetBlock(0),0);
|
||||
b1.MakeRef(&L2fes,rhs.GetBlock(1),0);
|
||||
|
||||
b0.AddDomainIntegrator(new VectorFEDomainLFIntegrator(neg_Z));
|
||||
b1.AddDomainIntegrator(new DomainLFIntegrator(neg_one));
|
||||
b1.AddDomainIntegrator(new DomainLFIntegrator(psi_old_minus_psi));
|
||||
|
||||
BilinearForm a00(&RTfes);
|
||||
a00.AddDomainIntegrator(new VectorFEMassIntegrator(DZ));
|
||||
a00.AddDomainIntegrator(new VectorFEMassIntegrator(tichonov_cf));
|
||||
|
||||
MixedBilinearForm a10(&RTfes,&L2fes);
|
||||
a10.AddDomainIntegrator(new VectorFEDivergenceIntegrator());
|
||||
a10.Assemble();
|
||||
a10.Finalize();
|
||||
SparseMatrix &A10 = a10.SpMat();
|
||||
SparseMatrix *A01 = Transpose(A10);
|
||||
|
||||
BilinearForm a11(&L2fes);
|
||||
a11.AddDomainIntegrator(new MassIntegrator(neg_tichonov_cf));
|
||||
a11.Assemble();
|
||||
a11.Finalize();
|
||||
SparseMatrix &A11 = a11.SpMat();
|
||||
|
||||
// 11. Iterate.
|
||||
int k;
|
||||
int total_iterations = 0;
|
||||
real_t increment_u = 0.1;
|
||||
GridFunction u_tmp(&L2fes);
|
||||
for (k = 0; k < max_it; k++)
|
||||
{
|
||||
u_tmp = u_old_gf;
|
||||
Z.SetAlpha(alpha);
|
||||
DZ.SetAlpha(alpha);
|
||||
|
||||
mfem::out << "\nOUTER ITERATION " << k+1 << endl;
|
||||
|
||||
int j;
|
||||
for ( j = 0; j < 5; j++)
|
||||
{
|
||||
total_iterations++;
|
||||
|
||||
b0.Assemble();
|
||||
b1.Assemble();
|
||||
|
||||
a00.Assemble(false);
|
||||
a00.Finalize(false);
|
||||
SparseMatrix &A00 = a00.SpMat();
|
||||
|
||||
// Construct Schur-complement preconditioner
|
||||
Vector A00_diag(a00.Height());
|
||||
A00.GetDiag(A00_diag);
|
||||
A00_diag.Reciprocal();
|
||||
SparseMatrix *S = Mult_AtDA(*A01, A00_diag);
|
||||
|
||||
BlockDiagonalPreconditioner prec(offsets);
|
||||
prec.SetDiagonalBlock(0,new DSmoother(A00));
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
prec.SetDiagonalBlock(1,new GSSmoother(*S));
|
||||
#else
|
||||
prec.SetDiagonalBlock(1,new UMFPackSolver(*S));
|
||||
#endif
|
||||
prec.owns_blocks = 1;
|
||||
|
||||
BlockOperator A(offsets);
|
||||
A.SetBlock(0,0,&A00);
|
||||
A.SetBlock(1,0,&A10);
|
||||
A.SetBlock(0,1,A01);
|
||||
A.SetBlock(1,1,&A11);
|
||||
|
||||
GMRES(A,prec,rhs,x,0,2000,500,1e-12,0.0);
|
||||
delete S;
|
||||
|
||||
u_tmp -= u_gf;
|
||||
real_t Newton_update_size = u_tmp.ComputeL2Error(zero);
|
||||
u_tmp = u_gf;
|
||||
|
||||
// Damped Newton update
|
||||
psi_gf.Add(newton_scaling, delta_psi_gf);
|
||||
a00.Update();
|
||||
|
||||
if (visualization)
|
||||
{
|
||||
sol_sock << "solution\n" << mesh << u_gf << "window_title 'Discrete solution'"
|
||||
<< flush;
|
||||
}
|
||||
|
||||
mfem::out << "Newton_update_size = " << Newton_update_size << endl;
|
||||
|
||||
if (Newton_update_size < increment_u)
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
u_tmp = u_gf;
|
||||
u_tmp -= u_old_gf;
|
||||
increment_u = u_tmp.ComputeL2Error(zero);
|
||||
|
||||
mfem::out << "Number of Newton iterations = " << j+1 << endl;
|
||||
mfem::out << "Increment (|| uₕ - uₕ_prvs||) = " << increment_u << endl;
|
||||
|
||||
u_old_gf = u_gf;
|
||||
psi_old_gf = psi_gf;
|
||||
|
||||
if (increment_u < tol || k == max_it-1)
|
||||
{
|
||||
break;
|
||||
}
|
||||
|
||||
alpha *= max(growth_rate, 1_r);
|
||||
|
||||
}
|
||||
|
||||
mfem::out << "\n Outer iterations: " << k+1
|
||||
<< "\n Total iterations: " << total_iterations
|
||||
<< "\n Total dofs: " << RTfes.GetTrueVSize() + L2fes.GetTrueVSize()
|
||||
<< endl;
|
||||
|
||||
delete A01;
|
||||
return 0;
|
||||
}
|
||||
|
||||
void ZCoefficient::Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(psi != NULL, "grid function is not set");
|
||||
MFEM_ASSERT(alpha > 0, "alpha is not positive");
|
||||
|
||||
Vector psi_vals(vdim);
|
||||
psi->GetVectorValue(T, ip, psi_vals);
|
||||
real_t norm = psi_vals.Norml2();
|
||||
real_t phi = 1.0 / sqrt(1.0/(alpha*alpha) + norm*norm);
|
||||
|
||||
V = psi_vals;
|
||||
V *= phi;
|
||||
}
|
||||
|
||||
void DZCoefficient::Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(psi != NULL, "grid function is not set");
|
||||
MFEM_ASSERT(alpha > 0, "alpha is not positive");
|
||||
|
||||
Vector psi_vals(height);
|
||||
psi->GetVectorValue(T, ip, psi_vals);
|
||||
real_t norm = psi_vals.Norml2();
|
||||
real_t phi = 1.0 / sqrt(1.0/(alpha*alpha) + norm*norm);
|
||||
|
||||
K = 0.0;
|
||||
for (int i = 0; i < height; i++)
|
||||
{
|
||||
K(i,i) = phi;
|
||||
for (int j = 0; j < height; j++)
|
||||
{
|
||||
K(i,j) -= psi_vals(i) * psi_vals(j) * pow(phi, 3);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,436 @@
|
||||
// MFEM Example 40 - Parallel Version
|
||||
//
|
||||
// Compile with: make ex40p
|
||||
//
|
||||
// Sample runs: mpirun -np 4 ex40p -step 10 -gr 2.0
|
||||
// mpirun -np 4 ex40p -step 10 -gr 2.0 -o 3 -r 1
|
||||
// mpirun -np 4 ex40p -step 10 -gr 2.0 -r 4 -m ../data/l-shape.mesh
|
||||
// mpirun -np 4 ex40p -step 10 -gr 2.0 -r 2 -m ../data/fichera.mesh
|
||||
//
|
||||
// Description: This example code demonstrates how to use MFEM to solve the
|
||||
// eikonal equation,
|
||||
//
|
||||
// |∇𝑢| = 1 in Ω, 𝑢 = g on ∂Ω.
|
||||
//
|
||||
// The solution of this problem coincides with the unique optimum of
|
||||
// the nonlinear program
|
||||
//
|
||||
// maximize ∫_Ω 𝑢 d𝑥 subject to |∇𝑢| ≤ 1, 𝑢 = g on Ω, (⋆)
|
||||
//
|
||||
// which is the foundation for method implemented below.
|
||||
//
|
||||
// Following the proximal Galerkin methodology [1] (see also Example
|
||||
// 36), we construct a Legendre function for the unit ball
|
||||
// 𝐵₁ := {𝑥 ∈ Rⁿ | |𝑥| < 1}. Our choice is the Hellinger entropy,
|
||||
//
|
||||
// h(𝑥) = −( 1 − |𝑥|² )^{1/2},
|
||||
//
|
||||
// although other choices are possible, each leading to a slightly
|
||||
// different algorithm. We then adaptively regularize the optimization
|
||||
// problem (⋆) with the Bregman divergence of the Hellinger entropy,
|
||||
//
|
||||
// maximize ∫_Ω 𝑢 d𝑥 - αₖ⁻¹ Dₕ(∇𝑢,∇𝑢ₖ₋₁) subject to 𝑢 = g on Ω.
|
||||
//
|
||||
// This results in a sequence of functions ( 𝜓ₖ , 𝑢ₖ ),
|
||||
//
|
||||
// 𝑢ₖ → 𝑢, 𝜓ₖ/|𝜓ₖ| → ∇𝑢 as k → \infty,
|
||||
//
|
||||
// defined by the nonlinear saddle-point problems
|
||||
//
|
||||
// Find 𝜓ₖ ∈ H(div,Ω) and 𝑢ₖ ∈ L²(Ω) such that
|
||||
// ( Zₖ(𝜓ₖ) , τ ) + ( 𝑢ₖ , ∇⋅τ ) = ⟨ g , τ⋅n ⟩ ∀ τ ∈ H(div,Ω)
|
||||
// ( ∇⋅𝜓ₖ , v ) = ( ∇⋅𝜓ₖ₋₁ - 1 , v ) ∀ v ∈ L²(Ω)
|
||||
//
|
||||
// where Zₖ(𝜓) := ∇h⁻¹(αₖ 𝜓) = 𝜓 / ( αₖ⁻² + |𝜓|² )^{1/2} and step size
|
||||
// αₖ > 0. These saddle-point problems are solved using a damped Newton's
|
||||
// method. This example assumes that g = 0 and allows the step size to
|
||||
// grow geometrically, αₖ = α₀rᵏ, where r ≥ 1 is the growth rate.
|
||||
//
|
||||
// [1] Keith, B. and Surowiec, T. (2023) Proximal Galerkin: A structure-
|
||||
// preserving finite element method for pointwise bound constraints.
|
||||
// arXiv:2307.12444 [math.NA]
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
class ZCoefficient : public VectorCoefficient
|
||||
{
|
||||
protected:
|
||||
ParGridFunction *psi;
|
||||
real_t alpha;
|
||||
|
||||
public:
|
||||
ZCoefficient(int vdim, ParGridFunction &psi_, real_t alpha_ = 1.0)
|
||||
: VectorCoefficient(vdim), psi(&psi_), alpha(alpha_) { }
|
||||
|
||||
virtual void Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
void SetAlpha(real_t alpha_) { alpha = alpha_; }
|
||||
};
|
||||
|
||||
class DZCoefficient : public MatrixCoefficient
|
||||
{
|
||||
protected:
|
||||
ParGridFunction *psi;
|
||||
real_t alpha;
|
||||
|
||||
public:
|
||||
DZCoefficient(int height, ParGridFunction &psi_, real_t alpha_ = 1.0)
|
||||
: MatrixCoefficient(height), psi(&psi_), alpha(alpha_) { }
|
||||
|
||||
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
void SetAlpha(real_t alpha_) { alpha = alpha_; }
|
||||
};
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 0. Initialize MPI and HYPRE.
|
||||
Mpi::Init();
|
||||
int num_procs = Mpi::WorldSize();
|
||||
int myid = Mpi::WorldRank();
|
||||
Hypre::Init();
|
||||
|
||||
// 1. Parse command-line options.
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
int max_it = 5;
|
||||
int ref_levels = 3;
|
||||
real_t alpha = 1.0;
|
||||
real_t growth_rate = 1.0;
|
||||
real_t newton_scaling = 0.9;
|
||||
real_t tichonov = 1e-1;
|
||||
real_t tol = 1e-4;
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&ref_levels, "-r", "--refs",
|
||||
"Number of h-refinements.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
"Maximum number of iterations");
|
||||
args.AddOption(&tol, "-tol", "--tol",
|
||||
"Stopping criteria based on the difference between"
|
||||
"successive solution updates");
|
||||
args.AddOption(&alpha, "-step", "--step",
|
||||
"Initial size alpha");
|
||||
args.AddOption(&growth_rate, "-gr", "--growth-rate",
|
||||
"Growth rate of the step size alpha");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
}
|
||||
return 1;
|
||||
}
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
// 2. Read the mesh from the mesh file.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
int sdim = mesh.SpaceDimension();
|
||||
|
||||
MFEM_ASSERT(mesh.bdr_attributes.Size(),
|
||||
"This example does not currently support meshes"
|
||||
" without boundary attributes."
|
||||
)
|
||||
|
||||
// 3. Postprocess the mesh.
|
||||
// 3A. Refine the mesh to increase the resolution.
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 3B. Interpolate the geometry after refinement to control geometry error.
|
||||
// NOTE: Minimum second-order interpolation is used to improve the accuracy.
|
||||
int curvature_order = max(order,2);
|
||||
mesh.SetCurvature(curvature_order);
|
||||
|
||||
ParMesh pmesh(MPI_COMM_WORLD, mesh);
|
||||
mesh.Clear();
|
||||
|
||||
// 4. Define the necessary finite element spaces on the mesh.
|
||||
RT_FECollection RTfec(order, dim);
|
||||
ParFiniteElementSpace RTfes(&pmesh, &RTfec);
|
||||
|
||||
L2_FECollection L2fec(order, dim);
|
||||
ParFiniteElementSpace L2fes(&pmesh, &L2fec);
|
||||
|
||||
int num_dofs_RT = RTfes.GlobalTrueVSize();
|
||||
int num_dofs_L2 = L2fes.GlobalTrueVSize();
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Number of H(div) dofs: "
|
||||
<< num_dofs_RT << endl;
|
||||
cout << "Number of L² dofs: "
|
||||
<< num_dofs_L2 << endl;
|
||||
}
|
||||
|
||||
// 5. Define the offsets for the block matrices
|
||||
Array<int> offsets(3);
|
||||
offsets[0] = 0;
|
||||
offsets[1] = RTfes.GetVSize();
|
||||
offsets[2] = L2fes.GetVSize();
|
||||
offsets.PartialSum();
|
||||
|
||||
Array<int> toffsets(3);
|
||||
toffsets[0] = 0;
|
||||
toffsets[1] = RTfes.GetTrueVSize();
|
||||
toffsets[2] = L2fes.GetTrueVSize();
|
||||
toffsets.PartialSum();
|
||||
|
||||
BlockVector x(offsets), rhs(offsets);
|
||||
x = 0.0; rhs = 0.0;
|
||||
|
||||
BlockVector tx(toffsets), trhs(toffsets);
|
||||
tx = 0.0; trhs = 0.0;
|
||||
|
||||
// 6. Define the solution vectors as a finite element grid functions
|
||||
// corresponding to the fespaces.
|
||||
ParGridFunction u_gf, delta_psi_gf;
|
||||
delta_psi_gf.MakeRef(&RTfes,x,offsets[0]);
|
||||
u_gf.MakeRef(&L2fes,x,offsets[1]);
|
||||
|
||||
ParGridFunction psi_old_gf(&RTfes);
|
||||
ParGridFunction psi_gf(&RTfes);
|
||||
ParGridFunction u_old_gf(&L2fes);
|
||||
|
||||
// 7. Define initial guesses for the solution variables.
|
||||
delta_psi_gf = 0.0;
|
||||
psi_gf = 0.0;
|
||||
u_gf = 0.0;
|
||||
psi_old_gf = psi_gf;
|
||||
u_old_gf = u_gf;
|
||||
|
||||
// 8. Prepare for glvis output.
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock;
|
||||
if (visualization)
|
||||
{
|
||||
sol_sock.open(vishost,visport);
|
||||
sol_sock.precision(8);
|
||||
}
|
||||
|
||||
// 9. Coefficients to be used later.
|
||||
ConstantCoefficient neg_one(-1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
ConstantCoefficient tichonov_cf(tichonov);
|
||||
ConstantCoefficient neg_tichonov_cf(-1.0*tichonov);
|
||||
ZCoefficient Z(sdim, psi_gf, alpha);
|
||||
DZCoefficient DZ(sdim, psi_gf, alpha);
|
||||
ScalarVectorProductCoefficient neg_Z(-1.0, Z);
|
||||
DivergenceGridFunctionCoefficient div_psi_cf(&psi_gf);
|
||||
DivergenceGridFunctionCoefficient div_psi_old_cf(&psi_old_gf);
|
||||
SumCoefficient psi_old_minus_psi(div_psi_old_cf, div_psi_cf, 1.0, -1.0);
|
||||
|
||||
// 10. Assemble constant matrices/vectors to avoid reassembly in the loop.
|
||||
ParLinearForm b0, b1;
|
||||
b0.MakeRef(&RTfes,rhs.GetBlock(0),0);
|
||||
b1.MakeRef(&L2fes,rhs.GetBlock(1),0);
|
||||
|
||||
b0.AddDomainIntegrator(new VectorFEDomainLFIntegrator(neg_Z));
|
||||
b1.AddDomainIntegrator(new DomainLFIntegrator(neg_one));
|
||||
b1.AddDomainIntegrator(new DomainLFIntegrator(psi_old_minus_psi));
|
||||
|
||||
ParBilinearForm a00(&RTfes);
|
||||
a00.AddDomainIntegrator(new VectorFEMassIntegrator(DZ));
|
||||
a00.AddDomainIntegrator(new VectorFEMassIntegrator(tichonov_cf));
|
||||
|
||||
ParMixedBilinearForm a10(&RTfes,&L2fes);
|
||||
a10.AddDomainIntegrator(new VectorFEDivergenceIntegrator());
|
||||
a10.Assemble();
|
||||
a10.Finalize();
|
||||
HypreParMatrix *A10 = a10.ParallelAssemble();
|
||||
|
||||
HypreParMatrix *A01 = A10->Transpose();
|
||||
|
||||
ParBilinearForm a11(&L2fes);
|
||||
a11.AddDomainIntegrator(new MassIntegrator(neg_tichonov_cf));
|
||||
a11.Assemble();
|
||||
a11.Finalize();
|
||||
HypreParMatrix *A11 = a11.ParallelAssemble();
|
||||
|
||||
// 11. Iterate.
|
||||
int k;
|
||||
int total_iterations = 0;
|
||||
real_t increment_u = 0.1;
|
||||
ParGridFunction u_tmp(&L2fes);
|
||||
for (k = 0; k < max_it; k++)
|
||||
{
|
||||
u_tmp = u_old_gf;
|
||||
Z.SetAlpha(alpha);
|
||||
DZ.SetAlpha(alpha);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "\nOUTER ITERATION " << k+1 << endl;
|
||||
}
|
||||
|
||||
int j;
|
||||
for ( j = 0; j < 5; j++)
|
||||
{
|
||||
total_iterations++;
|
||||
|
||||
b0.Assemble();
|
||||
b0.ParallelAssemble(trhs.GetBlock(0));
|
||||
|
||||
b1.Assemble();
|
||||
b1.ParallelAssemble(trhs.GetBlock(1));
|
||||
|
||||
a00.Assemble(false);
|
||||
a00.Finalize(false);
|
||||
HypreParMatrix *A00 = a00.ParallelAssemble();
|
||||
|
||||
// Construct Schur-complement preconditioner
|
||||
HypreParVector A00_diag(MPI_COMM_WORLD, A00->GetGlobalNumRows(),
|
||||
A00->GetRowStarts());
|
||||
A00->GetDiag(A00_diag);
|
||||
HypreParMatrix S_tmp(*A01);
|
||||
S_tmp.InvScaleRows(A00_diag);
|
||||
HypreParMatrix *S = ParMult(A10, &S_tmp, true);
|
||||
|
||||
BlockDiagonalPreconditioner prec(toffsets);
|
||||
HypreBoomerAMG P00(*A00);
|
||||
P00.SetPrintLevel(0);
|
||||
HypreBoomerAMG P11(*S);
|
||||
P11.SetPrintLevel(0);
|
||||
prec.SetDiagonalBlock(0,&P00);
|
||||
prec.SetDiagonalBlock(1,&P11);
|
||||
|
||||
BlockOperator A(toffsets);
|
||||
A.SetBlock(0,0,A00);
|
||||
A.SetBlock(1,0,A10);
|
||||
A.SetBlock(0,1,A01);
|
||||
A.SetBlock(1,1,A11);
|
||||
|
||||
GMRESSolver gmres(MPI_COMM_WORLD);
|
||||
gmres.SetPrintLevel(-1);
|
||||
gmres.SetRelTol(1e-8);
|
||||
gmres.SetMaxIter(2000);
|
||||
gmres.SetKDim(500);
|
||||
gmres.SetOperator(A);
|
||||
gmres.SetPreconditioner(prec);
|
||||
gmres.Mult(trhs,tx);
|
||||
delete S;
|
||||
delete A00;
|
||||
|
||||
delta_psi_gf.SetFromTrueDofs(tx.GetBlock(0));
|
||||
u_gf.SetFromTrueDofs(tx.GetBlock(1));
|
||||
|
||||
u_tmp -= u_gf;
|
||||
real_t Newton_update_size = u_tmp.ComputeL2Error(zero);
|
||||
u_tmp = u_gf;
|
||||
|
||||
// Damped Newton update
|
||||
psi_gf.Add(newton_scaling, delta_psi_gf);
|
||||
a00.Update();
|
||||
|
||||
if (visualization)
|
||||
{
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock << "solution\n" << pmesh << u_gf << "window_title 'Discrete solution'"
|
||||
<< flush;
|
||||
}
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "Newton_update_size = " << Newton_update_size << endl;
|
||||
}
|
||||
|
||||
if (Newton_update_size < increment_u)
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
u_tmp = u_gf;
|
||||
u_tmp -= u_old_gf;
|
||||
increment_u = u_tmp.ComputeL2Error(zero);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "Number of Newton iterations = " << j+1 << endl;
|
||||
mfem::out << "Increment (|| uₕ - uₕ_prvs||) = " << increment_u << endl;
|
||||
}
|
||||
|
||||
u_old_gf = u_gf;
|
||||
psi_old_gf = psi_gf;
|
||||
|
||||
if (increment_u < tol || k == max_it-1)
|
||||
{
|
||||
break;
|
||||
}
|
||||
|
||||
alpha *= max(growth_rate, 1_r);
|
||||
|
||||
}
|
||||
|
||||
// 12. Print stats.
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "\n Outer iterations: " << k+1
|
||||
<< "\n Total iterations: " << total_iterations
|
||||
<< "\n Total dofs: " << RTfes.GetTrueVSize() + L2fes.GetTrueVSize()
|
||||
<< endl;
|
||||
}
|
||||
|
||||
// 13. Free the used memory.
|
||||
delete A01;
|
||||
delete A10;
|
||||
delete A11;
|
||||
return 0;
|
||||
}
|
||||
|
||||
void ZCoefficient::Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(psi != NULL, "grid function is not set");
|
||||
MFEM_ASSERT(alpha > 0, "alpha is not positive");
|
||||
|
||||
Vector psi_vals(vdim);
|
||||
psi->GetVectorValue(T, ip, psi_vals);
|
||||
real_t norm = psi_vals.Norml2();
|
||||
real_t phi = 1.0 / sqrt(1.0/(alpha*alpha) + norm*norm);
|
||||
|
||||
V = psi_vals;
|
||||
V *= phi;
|
||||
}
|
||||
|
||||
void DZCoefficient::Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(psi != NULL, "grid function is not set");
|
||||
MFEM_ASSERT(alpha > 0, "alpha is not positive");
|
||||
|
||||
Vector psi_vals(height);
|
||||
psi->GetVectorValue(T, ip, psi_vals);
|
||||
real_t norm = psi_vals.Norml2();
|
||||
real_t phi = 1.0 / sqrt(1.0/(alpha*alpha) + norm*norm);
|
||||
|
||||
K = 0.0;
|
||||
for (int i = 0; i < height; i++)
|
||||
{
|
||||
K(i,i) = phi;
|
||||
for (int j = 0; j < height; j++)
|
||||
{
|
||||
K(i,j) -= psi_vals(i) * psi_vals(j) * pow(phi, 3);
|
||||
}
|
||||
}
|
||||
}
|
||||
+13
-5
@@ -23,14 +23,14 @@ MFEM_LIB_FILE = mfem_is_not_built
|
||||
|
||||
SEQ_EXAMPLES = ex0 ex1 ex2 ex3 ex4 ex5 ex6 ex7 ex8 ex9 ex10 ex14 ex15 ex16 \
|
||||
ex17 ex18 ex19 ex20 ex21 ex22 ex23 ex24 ex25 ex26 ex27 ex28 ex29 ex30 \
|
||||
ex31 ex33 ex34 ex36 ex37 ex38 ex39
|
||||
ex31 ex33 ex34 ex36 ex37 ex38 ex39 ex40
|
||||
PAR_EXAMPLES = ex0p ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex8p ex9p ex10p ex11p \
|
||||
ex12p ex13p ex14p ex15p ex16p ex17p ex18p ex19p ex20p ex21p ex22p ex24p \
|
||||
ex25p ex26p ex27p ex28p ex29p ex30p ex31p ex32p ex33p ex34p ex35p ex36p \
|
||||
ex37p ex39p
|
||||
SEQ_DEVICE_EXAMPLES = ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26 ex34
|
||||
PAR_DEVICE_EXAMPLES = ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p \
|
||||
ex24p ex25p ex26p ex34p ex35p
|
||||
ex37p ex39p ex40p
|
||||
SEQ_DEVICE_EXAMPLES = ex1 ex3 ex4 ex5 ex6 ex9 ex14 ex22 ex24 ex25 ex26 ex34
|
||||
PAR_DEVICE_EXAMPLES = ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex14p \
|
||||
ex22p ex24p ex25p ex26p ex34p ex35p
|
||||
|
||||
ifeq ($(MFEM_USE_LAPACK),YES)
|
||||
SEQ_EXAMPLES += ex38
|
||||
@@ -138,6 +138,14 @@ ex10-test-seq: ex10
|
||||
@$(call mfem-test,$<,, Serial example,-tf 5)
|
||||
ex10p-test-par: ex10p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-tf 5)
|
||||
ex14-test-seq-cuda: ex14
|
||||
@$(call mfem-test,$<,, Serial CUDA example,-r 2 -pa -d cuda)
|
||||
ex14p-test-par-cuda: ex14p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), Parallel CUDA example,-rs 2 -rp 0 -pa -d cuda)
|
||||
ex14-test-seq-hip: ex14
|
||||
@$(call mfem-test,$<,, Serial HIP example,-r 2 -pa -d hip)
|
||||
ex14p-test-par-hip: ex14p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), Parallel HIP example,-rs 2 -rp 0 -pa -d hip)
|
||||
ex15-test-seq: ex15
|
||||
@$(call mfem-test,$<,, Serial example,-e 1)
|
||||
ex15p-test-par: ex15p
|
||||
|
||||
@@ -1,3 +1,14 @@
|
||||
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include <algorithm>
|
||||
#include <assert.h>
|
||||
#include <cstdlib>
|
||||
|
||||
@@ -709,10 +709,7 @@ real_t HyperelasticOperator::ElasticEnergy(const ParGridFunction &x) const
|
||||
|
||||
real_t HyperelasticOperator::KineticEnergy(const ParGridFunction &v) const
|
||||
{
|
||||
real_t loc_energy = 0.5*M.InnerProduct(v, v);
|
||||
real_t energy;
|
||||
MPI_Allreduce(&loc_energy, &energy, 1, MPITypeMap<real_t>::mpi_type, MPI_SUM,
|
||||
fespace.GetComm());
|
||||
real_t energy = 0.5*M.ParInnerProduct(v, v);
|
||||
return energy;
|
||||
}
|
||||
|
||||
|
||||
@@ -66,7 +66,6 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Initialize MPI (required by PUMI) and HYPRE.
|
||||
Mpi::Init(argc, argv);
|
||||
int num_procs = Mpi::WorldSize();
|
||||
int myid = Mpi::WorldRank();
|
||||
Hypre::Init();
|
||||
|
||||
|
||||
@@ -80,8 +80,6 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Initialize MPI (required by PUMI) and HYPRE.
|
||||
Mpi::Init(argc, argv);
|
||||
int num_proc = Mpi::WorldSize();
|
||||
int myId = Mpi::WorldRank();
|
||||
Hypre::Init();
|
||||
|
||||
// 2. Parse command-line options.
|
||||
|
||||
@@ -856,10 +856,7 @@ double HyperelasticOperator::ElasticEnergy(const ParGridFunction &x) const
|
||||
|
||||
double HyperelasticOperator::KineticEnergy(const ParGridFunction &v) const
|
||||
{
|
||||
double loc_energy = 0.5*M.InnerProduct(v, v);
|
||||
double energy;
|
||||
MPI_Allreduce(&loc_energy, &energy, 1, MPI_DOUBLE, MPI_SUM,
|
||||
fespace.GetComm());
|
||||
double energy = 0.5*M.ParInnerProduct(v, v);
|
||||
return energy;
|
||||
}
|
||||
|
||||
|
||||
@@ -18,6 +18,7 @@ set(SRCS
|
||||
integ/bilininteg_convection_pa.cpp
|
||||
integ/bilininteg_convection_ea.cpp
|
||||
integ/bilininteg_curlcurl_pa.cpp
|
||||
integ/bilininteg_dgdiffusion_pa.cpp
|
||||
integ/bilininteg_dgtrace_pa.cpp
|
||||
integ/bilininteg_dgtrace_ea.cpp
|
||||
integ/bilininteg_diffusion_mf.cpp
|
||||
@@ -117,6 +118,7 @@ set(SRCS
|
||||
quadinterpolator.cpp
|
||||
quadinterpolator_face.cpp
|
||||
restriction.cpp
|
||||
normal_deriv_restriction.cpp
|
||||
staticcond.cpp
|
||||
tmop.cpp
|
||||
tmop/tmop_pa.cpp
|
||||
@@ -228,6 +230,7 @@ set(HDRS
|
||||
quadinterpolator.hpp
|
||||
quadinterpolator_face.hpp
|
||||
restriction.hpp
|
||||
normal_deriv_restriction.hpp
|
||||
fespacehierarchy.hpp
|
||||
staticcond.hpp
|
||||
tbilinearform.hpp
|
||||
|
||||
@@ -340,9 +340,9 @@ public:
|
||||
$ M^{-1} $ (currently returns NULL) */
|
||||
virtual MatrixInverse *Inverse() const;
|
||||
|
||||
/** @brief Finalizes the matrix initialization if the ::AssemblyLevel is
|
||||
/** @brief Finalizes the matrix initialization if the ::AssemblyLevel is
|
||||
AssemblyLevel::LEGACY.
|
||||
THe matrix that gets finalized is different if you are using static
|
||||
The matrix that gets finalized is different if you are using static
|
||||
condensation or hybridization.*/
|
||||
virtual void Finalize(int skip_zeros = 1);
|
||||
|
||||
@@ -643,7 +643,7 @@ public:
|
||||
void EliminateVDofs(const Array<int> &vdofs, const Vector &sol, Vector &rhs,
|
||||
DiagonalPolicy dpolicy = DIAG_ONE);
|
||||
|
||||
/** @brief Eliminate the given @a vdofs, storing the eliminated part
|
||||
/** @brief Eliminate the given @a vdofs, storing the eliminated part
|
||||
internally in $ M_e $.
|
||||
|
||||
This method works in conjunction with EliminateVDofsInRHS() and allows
|
||||
@@ -826,7 +826,7 @@ public:
|
||||
$ M^{-1} $ (currently unimplemented and returns NULL)*/
|
||||
virtual MatrixInverse *Inverse() const;
|
||||
|
||||
/** @brief Finalizes the matrix initialization if the ::AssemblyLevel is
|
||||
/** @brief Finalizes the matrix initialization if the ::AssemblyLevel is
|
||||
AssemblyLevel::LEGACY.*/
|
||||
virtual void Finalize(int skip_zeros = 1);
|
||||
|
||||
|
||||
+136
-8
@@ -282,6 +282,22 @@ void PABilinearFormExtension::SetupRestrictionOperators(const L2FaceValues m)
|
||||
int_face_X.SetSize(int_face_restrict_lex->Height(), Device::GetMemoryType());
|
||||
int_face_Y.SetSize(int_face_restrict_lex->Height(), Device::GetMemoryType());
|
||||
int_face_Y.UseDevice(true); // ensure 'int_face_Y = 0.0' is done on device
|
||||
|
||||
bool needs_normal_derivs = false;
|
||||
auto &integs = *a->GetFBFI();
|
||||
for (int i = 0; i < integs.Size(); ++i)
|
||||
{
|
||||
if (integs[i]->RequiresFaceNormalDerivatives())
|
||||
{
|
||||
needs_normal_derivs = true;
|
||||
break;
|
||||
}
|
||||
}
|
||||
if (needs_normal_derivs)
|
||||
{
|
||||
int_face_dXdn.SetSize(int_face_restrict_lex->Height());
|
||||
int_face_dYdn.SetSize(int_face_restrict_lex->Height());
|
||||
}
|
||||
}
|
||||
|
||||
const bool has_bdr_integs = (a->GetBFBFI()->Size() > 0 ||
|
||||
@@ -296,6 +312,22 @@ void PABilinearFormExtension::SetupRestrictionOperators(const L2FaceValues m)
|
||||
bdr_face_Y.SetSize(bdr_face_restrict_lex->Height(), Device::GetMemoryType());
|
||||
bdr_face_Y.UseDevice(true); // ensure 'faceBoundY = 0.0' is done on device
|
||||
|
||||
bool needs_normal_derivs = false;
|
||||
auto &integs = *a->GetBFBFI();
|
||||
for (int i = 0; i < integs.Size(); ++i)
|
||||
{
|
||||
if (integs[i]->RequiresFaceNormalDerivatives())
|
||||
{
|
||||
needs_normal_derivs = true;
|
||||
break;
|
||||
}
|
||||
}
|
||||
if (needs_normal_derivs)
|
||||
{
|
||||
bdr_face_dXdn.SetSize(bdr_face_restrict_lex->Height());
|
||||
bdr_face_dYdn.SetSize(bdr_face_restrict_lex->Height());
|
||||
}
|
||||
|
||||
const Mesh &mesh = *trial_fes->GetMesh();
|
||||
// See LinearFormExtension::Update for explanation of f_to_be logic.
|
||||
std::unordered_map<int,int> f_to_be;
|
||||
@@ -542,8 +574,8 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
localY = 0.0;
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*integrators[i], localX, elem_markers[i], elem_attributes,
|
||||
false, localY);
|
||||
AddMultWithMarkers(*integrators[i], localX, elem_markers[i],
|
||||
elem_attributes, false, localY);
|
||||
}
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
}
|
||||
@@ -557,15 +589,57 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
const int iFISz = intFaceIntegrators.Size();
|
||||
if (int_face_restrict_lex && iFISz>0)
|
||||
{
|
||||
int_face_restrict_lex->Mult(x, int_face_X);
|
||||
if (int_face_X.Size()>0)
|
||||
// When assembling interior face integrators for DG spaces, we need to
|
||||
// exchange the face-neighbor information. This happens inside member
|
||||
// functions of the 'int_face_restrict_lex'. To avoid repeated calls to
|
||||
// ParGridFunction::ExchangeFaceNbrData, if we have a parallel space
|
||||
// with interior face integrators, we create a ParGridFunction that
|
||||
// will be used to cache the face-neighbor data. x_dg should be passed
|
||||
// to any restriction operator that may need to use face-neighbor data.
|
||||
const Vector *x_dg = &x;
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParGridFunction x_pgf;
|
||||
if (auto *pfes = dynamic_cast<ParFiniteElementSpace*>(a->FESpace()))
|
||||
{
|
||||
x_pgf.MakeRef(pfes, const_cast<Vector&>(x), 0);
|
||||
x_dg = &x_pgf;
|
||||
}
|
||||
#endif
|
||||
|
||||
int_face_restrict_lex->Mult(*x_dg, int_face_X);
|
||||
if (int_face_dXdn.Size() > 0)
|
||||
{
|
||||
int_face_restrict_lex->NormalDerivativeMult(*x_dg, int_face_dXdn);
|
||||
}
|
||||
if (int_face_X.Size() > 0)
|
||||
{
|
||||
int_face_Y = 0.0;
|
||||
|
||||
// if normal derivatives are needed by at least one integrator...
|
||||
if (int_face_dYdn.Size() > 0)
|
||||
{
|
||||
int_face_dYdn = 0.0;
|
||||
}
|
||||
|
||||
for (int i = 0; i < iFISz; ++i)
|
||||
{
|
||||
intFaceIntegrators[i]->AddMultPA(int_face_X, int_face_Y);
|
||||
if (intFaceIntegrators[i]->RequiresFaceNormalDerivatives())
|
||||
{
|
||||
intFaceIntegrators[i]->AddMultPAFaceNormalDerivatives(
|
||||
int_face_X, int_face_dXdn,
|
||||
int_face_Y, int_face_dYdn);
|
||||
}
|
||||
else
|
||||
{
|
||||
intFaceIntegrators[i]->AddMultPA(int_face_X, int_face_Y);
|
||||
}
|
||||
}
|
||||
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
|
||||
if (int_face_dYdn.Size() > 0)
|
||||
{
|
||||
int_face_restrict_lex->NormalDerivativeAddMultTranspose(
|
||||
int_face_dYdn, y);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -579,9 +653,19 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
Array<Array<int>*> &bdr_markers = *a->GetBBFI_Marker();
|
||||
Array<Array<int>*> &bdr_face_markers = *a->GetBFBFI_Marker();
|
||||
bdr_face_restrict_lex->Mult(x, bdr_face_X);
|
||||
if (bdr_face_X.Size()>0)
|
||||
if (bdr_face_dXdn.Size() > 0)
|
||||
{
|
||||
bdr_face_restrict_lex->NormalDerivativeMult(x, bdr_face_dXdn);
|
||||
}
|
||||
if (bdr_face_X.Size() > 0)
|
||||
{
|
||||
bdr_face_Y = 0.0;
|
||||
|
||||
// if normal derivatives are needed by at least one integrator...
|
||||
if (bdr_face_dYdn.Size() > 0)
|
||||
{
|
||||
bdr_face_dYdn = 0.0;
|
||||
}
|
||||
for (int i = 0; i < n_bdr_integs; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*bdr_integs[i], bdr_face_X, bdr_markers[i], bdr_attributes,
|
||||
@@ -589,10 +673,23 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
}
|
||||
for (int i = 0; i < n_bdr_face_integs; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*bdr_face_integs[i], bdr_face_X, bdr_face_markers[i],
|
||||
bdr_attributes, false, bdr_face_Y);
|
||||
if (bdr_face_integs[i]->RequiresFaceNormalDerivatives())
|
||||
{
|
||||
AddMultNormalDerivativesWithMarkers(
|
||||
*bdr_face_integs[i], bdr_face_X, bdr_face_dXdn,
|
||||
bdr_face_markers[i], bdr_attributes, bdr_face_Y, bdr_face_dYdn);
|
||||
}
|
||||
else
|
||||
{
|
||||
AddMultWithMarkers(*bdr_face_integs[i], bdr_face_X, bdr_face_markers[i],
|
||||
bdr_attributes, false, bdr_face_Y);
|
||||
}
|
||||
}
|
||||
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
|
||||
if (bdr_face_dYdn.Size() > 0)
|
||||
{
|
||||
bdr_face_restrict_lex->NormalDerivativeAddMultTranspose(bdr_face_dYdn, y);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -693,6 +790,37 @@ static void AddWithMarkers_(
|
||||
});
|
||||
}
|
||||
|
||||
void PABilinearFormExtension::AddMultNormalDerivativesWithMarkers(
|
||||
const BilinearFormIntegrator &integ,
|
||||
const Vector &x,
|
||||
const Vector &dxdn,
|
||||
const Array<int> *markers,
|
||||
const Array<int> &attributes,
|
||||
Vector &y,
|
||||
Vector &dydn) const
|
||||
{
|
||||
if (markers)
|
||||
{
|
||||
tmp_evec.SetSize(y.Size() + dydn.Size());
|
||||
tmp_evec = 0.0;
|
||||
Vector tmp_y(tmp_evec, 0, y.Size());
|
||||
Vector tmp_dydn(tmp_evec, y.Size(), dydn.Size());
|
||||
|
||||
integ.AddMultPAFaceNormalDerivatives(x, dxdn, tmp_y, tmp_dydn);
|
||||
|
||||
const int ne = attributes.Size();
|
||||
const int nd_1 = x.Size() / ne;
|
||||
const int nd_2 = dxdn.Size() / ne;
|
||||
|
||||
AddWithMarkers_(ne, nd_1, tmp_y, *markers, attributes, y);
|
||||
AddWithMarkers_(ne, nd_2, tmp_dydn, *markers, attributes, dydn);
|
||||
}
|
||||
else
|
||||
{
|
||||
integ.AddMultPAFaceNormalDerivatives(x, dxdn, y, dydn);
|
||||
}
|
||||
}
|
||||
|
||||
void PABilinearFormExtension::AddMultWithMarkers(
|
||||
const BilinearFormIntegrator &integ,
|
||||
const Vector &x,
|
||||
|
||||
@@ -74,6 +74,8 @@ protected:
|
||||
mutable Vector localX, localY;
|
||||
mutable Vector int_face_X, int_face_Y;
|
||||
mutable Vector bdr_face_X, bdr_face_Y;
|
||||
mutable Vector int_face_dXdn, int_face_dYdn;
|
||||
mutable Vector bdr_face_dXdn, bdr_face_dYdn;
|
||||
const Operator *elem_restrict; // Not owned
|
||||
const FaceRestriction *int_face_restrict_lex; // Not owned
|
||||
const FaceRestriction *bdr_face_restrict_lex; // Not owned
|
||||
@@ -113,6 +115,23 @@ protected:
|
||||
const Array<int> &attributes,
|
||||
const bool transpose,
|
||||
Vector &y) const;
|
||||
|
||||
/// @brief Performs the same function as AddMultWithMarkers, but takes as
|
||||
/// input and output face normal derivatives.
|
||||
///
|
||||
/// This is required when the integrator requires face normal derivatives,
|
||||
/// for example, DGDiffusionIntegrator.
|
||||
///
|
||||
/// This is called when the integrator's member function
|
||||
/// BilinearFormIntegrator::RequiresFaceNormalDerivatives() returns true.
|
||||
void AddMultNormalDerivativesWithMarkers(
|
||||
const BilinearFormIntegrator &integ,
|
||||
const Vector &x,
|
||||
const Vector &dxdn,
|
||||
const Array<int> *markers,
|
||||
const Array<int> &attributes,
|
||||
Vector &y,
|
||||
Vector &dydn) const;
|
||||
};
|
||||
|
||||
/// Data and methods for element-assembled bilinear forms
|
||||
|
||||
+362
-12
@@ -189,6 +189,12 @@ void BilinearFormIntegrator::AssembleTraceFaceMatrix (int elem,
|
||||
" Integrator class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AddMultPAFaceNormalDerivatives(
|
||||
const Vector &x, const Vector &dxdn, Vector &y, Vector &dydn) const
|
||||
{
|
||||
MFEM_ABORT("Not implemented.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleElementVector(
|
||||
const FiniteElement &el, ElementTransformation &Tr, const Vector &elfun,
|
||||
Vector &elvect)
|
||||
@@ -1533,6 +1539,351 @@ const IntegrationRule &ConvectionIntegrator::GetRule(
|
||||
return GetRule(el,el,Trans);
|
||||
}
|
||||
|
||||
|
||||
void LaplaceIntegrator::AssembleElementMatrix(const FiniteElement &el,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat )
|
||||
{
|
||||
int nd = el.GetDof();
|
||||
real_t w;
|
||||
|
||||
elmat.SetSize(nd);
|
||||
shape.SetSize(nd);
|
||||
laplace.SetSize(nd);
|
||||
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, el, Trans);
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
Trans.SetIntPoint (&ip);
|
||||
|
||||
el.CalcPhysShape(Trans, shape);
|
||||
el.CalcPhysLaplacian(Trans, laplace);
|
||||
|
||||
w = Trans.Weight() * ip.weight * alpha;
|
||||
if (Q)
|
||||
{
|
||||
w *= Q -> Eval(Trans, ip);
|
||||
}
|
||||
shape *= w;
|
||||
AddMultVWt(shape, laplace, elmat);
|
||||
}
|
||||
}
|
||||
|
||||
void LaplaceIntegrator::AssembleElementMatrix2(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat)
|
||||
{
|
||||
int tr_nd = trial_fe.GetDof();
|
||||
int te_nd = test_fe.GetDof();
|
||||
|
||||
elmat.SetSize(te_nd, tr_nd);
|
||||
laplace.SetSize(tr_nd);
|
||||
shape.SetSize(te_nd);
|
||||
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(trial_fe, test_fe,
|
||||
Trans);
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
Trans.SetIntPoint (&ip);
|
||||
|
||||
test_fe.CalcPhysShape(Trans, shape);
|
||||
trial_fe.CalcPhysLaplacian(Trans, laplace);
|
||||
|
||||
real_t w = Trans.Weight() * ip.weight * alpha;
|
||||
if (Q)
|
||||
{
|
||||
w *= Q -> Eval(Trans, ip);
|
||||
}
|
||||
AddMult_a_VWt(w, shape, laplace, elmat);
|
||||
}
|
||||
}
|
||||
|
||||
const IntegrationRule &LaplaceIntegrator::GetRule(
|
||||
const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans)
|
||||
{
|
||||
int order = trial_fe.GetOrder() + test_fe.GetOrder();
|
||||
return IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
void LaplaceGradIntegrator::AssembleElementMatrix(const FiniteElement &el,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat )
|
||||
{
|
||||
int nd = el.GetDof();
|
||||
dim = el.GetDim();
|
||||
|
||||
elmat.SetSize(nd);
|
||||
dshape.SetSize(nd,dim);
|
||||
adjJ.SetSize(dim);
|
||||
laplace.SetSize(nd);
|
||||
vec2.SetSize(dim);
|
||||
BdFidxT.SetSize(nd);
|
||||
|
||||
Vector vec1;
|
||||
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, el, Trans);
|
||||
|
||||
Q->Eval(Q_ir, Trans, *ir);
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
el.CalcDShape(ip, dshape);
|
||||
el.CalcPhysLaplacian(Trans, laplace);
|
||||
|
||||
Trans.SetIntPoint(&ip);
|
||||
CalcAdjugate(Trans.Jacobian(), adjJ);
|
||||
Q_ir.GetColumnReference(i, vec1);
|
||||
vec1 *= alpha * ip.weight;
|
||||
|
||||
adjJ.Mult(vec1, vec2);
|
||||
dshape.Mult(vec2, BdFidxT);
|
||||
|
||||
AddMultVWt(BdFidxT, laplace, elmat);
|
||||
}
|
||||
}
|
||||
|
||||
void LaplaceGradIntegrator::AssembleElementMatrix2(const FiniteElement
|
||||
&trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat)
|
||||
{
|
||||
dim = trial_fe.GetDim();
|
||||
int tr_nd = trial_fe.GetDof();
|
||||
int te_nd = test_fe.GetDof();
|
||||
|
||||
elmat.SetSize(te_nd, tr_nd);
|
||||
laplace.SetSize(tr_nd);
|
||||
dshape.SetSize(te_nd,dim);
|
||||
adjJ.SetSize(dim);
|
||||
vec2.SetSize(dim);
|
||||
BdFidxT.SetSize(te_nd);
|
||||
|
||||
Vector vec1;
|
||||
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(trial_fe, test_fe,
|
||||
Trans);
|
||||
|
||||
Q->Eval(Q_ir, Trans, *ir);
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
test_fe.CalcDShape(ip, dshape);
|
||||
trial_fe.CalcPhysLaplacian(Trans, laplace);
|
||||
|
||||
Trans.SetIntPoint(&ip);
|
||||
CalcAdjugate(Trans.Jacobian(), adjJ);
|
||||
Q_ir.GetColumnReference(i, vec1);
|
||||
vec1 *= alpha * ip.weight;
|
||||
|
||||
adjJ.Mult(vec1, vec2);
|
||||
dshape.Mult(vec2, BdFidxT);
|
||||
|
||||
AddMultVWt(BdFidxT, laplace,elmat);
|
||||
}
|
||||
}
|
||||
|
||||
const IntegrationRule &LaplaceGradIntegrator::GetRule(
|
||||
const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans)
|
||||
{
|
||||
int order = trial_fe.GetOrder() + test_fe.GetOrder();
|
||||
return IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
void LaplaceLaplaceIntegrator::AssembleElementMatrix(const FiniteElement &el,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat )
|
||||
{
|
||||
int nd = el.GetDof();
|
||||
real_t w;
|
||||
|
||||
elmat.SetSize(nd);
|
||||
laplace.SetSize(nd);
|
||||
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, el, Trans);
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
Trans.SetIntPoint (&ip);
|
||||
|
||||
el.CalcPhysLaplacian(Trans, laplace);
|
||||
|
||||
w = Trans.Weight() * ip.weight * alpha;
|
||||
if (Q)
|
||||
{
|
||||
w *= Q -> Eval(Trans, ip);
|
||||
}
|
||||
AddMult_a_VVt(w, laplace, elmat);
|
||||
}
|
||||
}
|
||||
|
||||
void LaplaceLaplaceIntegrator::AssembleElementMatrix2(const FiniteElement
|
||||
&trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat)
|
||||
{
|
||||
int
|
||||
dim = trial_fe.GetDim();
|
||||
int tr_nd = trial_fe.GetDof();
|
||||
int te_nd = test_fe.GetDof();
|
||||
real_t w;
|
||||
|
||||
elmat.SetSize(te_nd, tr_nd);
|
||||
laplace.SetSize(tr_nd);
|
||||
te_laplace.SetSize(te_nd);
|
||||
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(trial_fe, test_fe,
|
||||
Trans);
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
Trans.SetIntPoint (&ip);
|
||||
|
||||
trial_fe.CalcPhysLaplacian(Trans, laplace);
|
||||
test_fe.CalcPhysLaplacian(Trans, te_laplace);
|
||||
|
||||
w = Trans.Weight() * ip.weight * alpha;
|
||||
if (Q)
|
||||
{
|
||||
w *= Q -> Eval(Trans, ip);
|
||||
}
|
||||
AddMult_a_VWt(w, te_laplace, laplace, elmat);
|
||||
}
|
||||
}
|
||||
|
||||
const IntegrationRule &LaplaceLaplaceIntegrator::GetRule(
|
||||
const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans)
|
||||
{
|
||||
int order = trial_fe.GetOrder() + test_fe.GetOrder();
|
||||
return IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
void InverseEstimateIntegrator::AssembleElementMatrix(const FiniteElement &el,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat )
|
||||
{
|
||||
elmat = 0.0;
|
||||
|
||||
int nd = el.GetDof();
|
||||
int dim = el.GetDim();
|
||||
|
||||
shape.SetSize(nd);
|
||||
dshape.SetSize(nd,dim);
|
||||
laplace.SetSize(nd);
|
||||
|
||||
lapmat.SetSize(nd,nd);
|
||||
bimat.SetSize(nd,nd);
|
||||
ovec.SetSize(nd);
|
||||
|
||||
real_t w,q;
|
||||
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int order = Trans.OrderGrad(&el) + Trans.Order() + el.GetOrder();
|
||||
ir = &IntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
|
||||
bimat = 0.0;
|
||||
lapmat = 0.0;
|
||||
ovec = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
Trans.SetIntPoint(&ip);
|
||||
w = Trans.Weight()*ip.weight;
|
||||
if (Q)
|
||||
{
|
||||
q = Q->Eval(Trans, ip);
|
||||
}
|
||||
|
||||
el.CalcPhysDShape(Trans, dshape);
|
||||
AddMult_a_AAt(w*q, dshape, lapmat);
|
||||
|
||||
el.CalcPhysLaplacian(Trans, laplace);
|
||||
AddMult_a_VVt(w*q*q, laplace, bimat);
|
||||
|
||||
el.CalcPhysShape(Trans, shape);
|
||||
ovec.Add(w, shape);
|
||||
}
|
||||
|
||||
// Power method
|
||||
Vector x(nd);
|
||||
x.Randomize(696383532);
|
||||
|
||||
// Correct nullspace + inverse
|
||||
AddMult_a_VVt(1.0, ovec, lapmat);
|
||||
DenseMatrixInverse L_inv(lapmat);
|
||||
|
||||
// DenseMatrix M_i, Q_i;
|
||||
real_t alpha= 0.0, eval_i = 0.0, eval_prev = 0.0;
|
||||
|
||||
// Inverse power method
|
||||
Vector x_tmp(nd);
|
||||
int iter = 0;
|
||||
const real_t rel_tol = 1e-4;
|
||||
|
||||
alpha = ovec*ovec;
|
||||
ovec *= 1.0/sqrt(alpha);
|
||||
do
|
||||
{
|
||||
// Othogonalize
|
||||
alpha = x*ovec;
|
||||
x.Add(-alpha, ovec);
|
||||
|
||||
// MatVec (2x)
|
||||
bimat.Mult(x, x_tmp);
|
||||
L_inv.Mult(x_tmp, x);
|
||||
|
||||
eval_prev = eval_i;
|
||||
eval_i = x.Norml2();
|
||||
x *= 1.0/eval_i;
|
||||
++iter;
|
||||
}
|
||||
while ((iter < 10000) && (fabs(eval_i - eval_prev)/fabs(eval_i) > rel_tol));
|
||||
MFEM_VERIFY(fabs(eval_i - eval_prev)/fabs(eval_i) <= rel_tol,
|
||||
"Inverse power method did not converge."
|
||||
<< "\n\t iter = " << iter
|
||||
<< "\n\t eval_i = " << eval_i
|
||||
<< "\n\t eval_prev = " << eval_prev
|
||||
<< "\n\t fabs(eval_i - eval_prev)/fabs(eval_i) = "
|
||||
<< fabs(eval_i - eval_prev)/fabs(eval_i));
|
||||
cout<<"evev = "<<eval_i<<" "<<iter<<endl;
|
||||
}
|
||||
|
||||
const IntegrationRule &InverseEstimateIntegrator::GetRule(
|
||||
const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans)
|
||||
{
|
||||
// int order = Trans.OrderGrad(&trial_fe) + Trans.Order() + test_fe.GetOrder() - 2;
|
||||
int order = trial_fe.GetOrder() + test_fe.GetOrder();
|
||||
return IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
|
||||
void VectorMassIntegrator::AssembleElementMatrix
|
||||
( const FiniteElement &el, ElementTransformation &Trans,
|
||||
DenseMatrix &elmat )
|
||||
@@ -3423,7 +3774,7 @@ void DGDiffusionIntegrator::AssembleFaceMatrix(
|
||||
const FiniteElement &el1, const FiniteElement &el2,
|
||||
FaceElementTransformations &Trans, DenseMatrix &elmat)
|
||||
{
|
||||
int dim, ndof1, ndof2, ndofs;
|
||||
int ndof1, ndof2, ndofs;
|
||||
bool kappa_is_nonzero = (kappa != 0.);
|
||||
real_t w, wq = 0.0;
|
||||
|
||||
@@ -3466,17 +3817,9 @@ void DGDiffusionIntegrator::AssembleFaceMatrix(
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
// a simple choice for the integration order; is this OK?
|
||||
int order;
|
||||
if (ndof2)
|
||||
{
|
||||
order = 2*max(el1.GetOrder(), el2.GetOrder());
|
||||
}
|
||||
else
|
||||
{
|
||||
order = 2*el1.GetOrder();
|
||||
}
|
||||
ir = &IntRules.Get(Trans.GetGeometryType(), order);
|
||||
const int order = (ndof2) ? max(el1.GetOrder(),
|
||||
el2.GetOrder()) : el1.GetOrder();
|
||||
ir = &GetRule(order, Trans);
|
||||
}
|
||||
|
||||
// assemble: < {(Q \nabla u).n},[v] > --> elmat
|
||||
@@ -3654,6 +3997,13 @@ void DGDiffusionIntegrator::AssembleFaceMatrix(
|
||||
}
|
||||
}
|
||||
|
||||
const IntegrationRule &DGDiffusionIntegrator::GetRule(
|
||||
int order, FaceElementTransformations &T)
|
||||
{
|
||||
// order is typically the maximum of the order of the left and right elements
|
||||
// neighboring the given face.
|
||||
return IntRules.Get(T.GetGeometryType(), 2*order);
|
||||
}
|
||||
|
||||
// static method
|
||||
void DGElasticityIntegrator::AssembleBlock(
|
||||
|
||||
+189
-4
@@ -266,6 +266,39 @@ public:
|
||||
Vector &flux, Vector *d_energy = NULL)
|
||||
{ return 0.0; }
|
||||
|
||||
/** @brief For bilinear forms on element faces, specifies if the normal
|
||||
derivatives are needed on the faces or just the face restriction.
|
||||
|
||||
@details if RequiresFaceNormalDerivatives() == true, then
|
||||
AddMultPAFaceNormalDerivatives(...) should be invoked in place
|
||||
of AddMultPA(...) and L2NormalDerivativeFaceRestriction should
|
||||
be used to compute the normal derivatives. This is used for some
|
||||
DG integrators, for example DGDiffusionIntegrator.
|
||||
|
||||
@returns whether normal derivatives appear in the bilinear form.
|
||||
*/
|
||||
virtual bool RequiresFaceNormalDerivatives() const { return false; }
|
||||
|
||||
/// Method for partially assembled action.
|
||||
/** @brief For bilinear forms on element faces that depend on the normal
|
||||
derivative on the faces, computes the action of integrator to the
|
||||
face values @a x and reference-normal derivatives @a dxdn and adds
|
||||
the result to @a y and @a dydn.
|
||||
|
||||
@details This method can be called only after the method AssemblePA() has
|
||||
been called.
|
||||
|
||||
@param[in] x E-vector of face values (provided by
|
||||
FaceRestriction::Mult)
|
||||
@param[in] dxdn E-vector of face reference-normal derivatives
|
||||
(provided by FaceRestriction::NormalDerivativeMult)
|
||||
@param[in,out] y E-vector of face values to add action to.
|
||||
@param[in,out] dydn E-vector of face reference-normal derivative values to
|
||||
add action to.
|
||||
*/
|
||||
virtual void AddMultPAFaceNormalDerivatives(const Vector &x, const Vector &dxdn,
|
||||
Vector &y, Vector &dydn) const;
|
||||
|
||||
virtual ~BilinearFormIntegrator() { }
|
||||
};
|
||||
|
||||
@@ -2417,6 +2450,135 @@ public:
|
||||
DenseMatrix &);
|
||||
};
|
||||
|
||||
|
||||
/// $\alpha (Q \Delta u, v)$
|
||||
class LaplaceIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
real_t alpha;
|
||||
|
||||
private:
|
||||
Vector laplace, shape;
|
||||
|
||||
public:
|
||||
LaplaceIntegrator(Coefficient &q, real_t a = 1.0)
|
||||
: Q(&q) { alpha = a; }
|
||||
|
||||
virtual void AssembleElementMatrix(const FiniteElement &,
|
||||
ElementTransformation &,
|
||||
DenseMatrix &);
|
||||
|
||||
virtual void AssembleElementMatrix2(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
static const IntegrationRule &GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans);
|
||||
};
|
||||
|
||||
/// $\alpha (u, Q \Delta v)$
|
||||
class TransposeLaplaceIntegrator : public TransposeIntegrator
|
||||
{
|
||||
public:
|
||||
TransposeLaplaceIntegrator (Coefficient &q, real_t a = 1.0)
|
||||
: TransposeIntegrator(new LaplaceIntegrator(q, a)) { }
|
||||
};
|
||||
|
||||
/// $\alpha (\Delta u, Q \cdot \nabla v)$
|
||||
class LaplaceGradIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
protected:
|
||||
VectorCoefficient *Q;
|
||||
real_t alpha;
|
||||
int dim;
|
||||
|
||||
private:
|
||||
Vector laplace, vec2, BdFidxT;
|
||||
DenseMatrix dshape, adjJ, Q_ir;
|
||||
|
||||
public:
|
||||
LaplaceGradIntegrator(VectorCoefficient &q, real_t a = 1.0)
|
||||
: Q(&q) { alpha = a; }
|
||||
|
||||
virtual void AssembleElementMatrix(const FiniteElement &,
|
||||
ElementTransformation &,
|
||||
DenseMatrix &);
|
||||
|
||||
virtual void AssembleElementMatrix2(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
static const IntegrationRule &GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans);
|
||||
};
|
||||
|
||||
/// $\alpha (Q \cdot \nabla u, \Delta v)$
|
||||
class GradLaplaceIntegrator : public TransposeIntegrator
|
||||
{
|
||||
public:
|
||||
GradLaplaceIntegrator(VectorCoefficient &q, real_t a = 1.0)
|
||||
: TransposeIntegrator(new LaplaceGradIntegrator(q, a)) { }
|
||||
};
|
||||
|
||||
/// $\alpha (Q \Delta u, \Delta v)$
|
||||
class LaplaceLaplaceIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
real_t alpha;
|
||||
|
||||
private:
|
||||
Vector laplace, te_laplace;
|
||||
|
||||
public:
|
||||
LaplaceLaplaceIntegrator(Coefficient &q, real_t a = 1.0)
|
||||
: Q(&q) { alpha = a; }
|
||||
|
||||
virtual void AssembleElementMatrix(const FiniteElement &,
|
||||
ElementTransformation &,
|
||||
DenseMatrix &);
|
||||
|
||||
virtual void AssembleElementMatrix2(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
static const IntegrationRule &GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans);
|
||||
};
|
||||
|
||||
// Alias for @LaplaceLaplaceIntegrator.
|
||||
using BiHarmonicIntegrator = LaplaceLaplaceIntegrator;
|
||||
|
||||
/// Get the inverse estimate
|
||||
class InverseEstimateIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
|
||||
private:
|
||||
Vector laplace, shape, ovec;//, vec2, BdFidxT;
|
||||
DenseMatrix dshape, lapmat, bimat;//, adjJ, Q_ir;
|
||||
|
||||
public:
|
||||
InverseEstimateIntegrator(Coefficient &q)
|
||||
: Q(&q) { }
|
||||
|
||||
virtual void AssembleElementMatrix(const FiniteElement &,
|
||||
ElementTransformation &,
|
||||
DenseMatrix &);
|
||||
|
||||
static const IntegrationRule &GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans);
|
||||
};
|
||||
|
||||
/** Class for integrating the bilinear form $a(u,v) := (Q u, v)$,
|
||||
where $u=(u_1,\dots,u_n)$ and $v=(v_1,\dots,v_n)$, $u_i$ and $v_i$ are defined
|
||||
by scalar FE through standard transformation. */
|
||||
@@ -3229,6 +3391,13 @@ protected:
|
||||
Vector shape1, shape2, dshape1dn, dshape2dn, nor, nh, ni;
|
||||
DenseMatrix jmat, dshape1, dshape2, mq, adjJ;
|
||||
|
||||
|
||||
// PA extension
|
||||
Vector pa_data; // (Q, h, dot(n,J)|el0, dot(n,J)|el1)
|
||||
const DofToQuad *maps; ///< Not owned
|
||||
int dim, nf, nq, dofs1D, quad1D;
|
||||
IntegrationRules irs{0, Quadrature1D::GaussLobatto};
|
||||
|
||||
public:
|
||||
DGDiffusionIntegrator(const real_t s, const real_t k)
|
||||
: Q(NULL), MQ(NULL), sigma(s), kappa(k) { }
|
||||
@@ -3237,10 +3406,26 @@ public:
|
||||
DGDiffusionIntegrator(MatrixCoefficient &q, const real_t s, const real_t k)
|
||||
: Q(NULL), MQ(&q), sigma(s), kappa(k) { }
|
||||
using BilinearFormIntegrator::AssembleFaceMatrix;
|
||||
virtual void AssembleFaceMatrix(const FiniteElement &el1,
|
||||
const FiniteElement &el2,
|
||||
FaceElementTransformations &Trans,
|
||||
DenseMatrix &elmat);
|
||||
void AssembleFaceMatrix(const FiniteElement &el1,
|
||||
const FiniteElement &el2,
|
||||
FaceElementTransformations &Trans,
|
||||
DenseMatrix &elmat) override;
|
||||
|
||||
bool RequiresFaceNormalDerivatives() const override { return true; }
|
||||
|
||||
using BilinearFormIntegrator::AssemblePA;
|
||||
|
||||
void AssemblePAInteriorFaces(const FiniteElementSpace &fes) override;
|
||||
|
||||
void AssemblePABoundaryFaces(const FiniteElementSpace &fes) override;
|
||||
|
||||
void AddMultPAFaceNormalDerivatives(const Vector &x, const Vector &dxdn,
|
||||
Vector &y, Vector &dydn) const override;
|
||||
|
||||
const IntegrationRule &GetRule(int order, FaceElementTransformations &T);
|
||||
|
||||
private:
|
||||
void SetupPA(const FiniteElementSpace &fes, FaceType type);
|
||||
};
|
||||
|
||||
/** Integrator for the "BR2" diffusion stabilization term
|
||||
|
||||
+294
-8
@@ -807,6 +807,7 @@ void SymmetricMatrixCoefficient::ProjectSymmetric(QuadratureFunction &qf)
|
||||
|
||||
QuadratureSpaceBase &qspace = *qf.GetSpace();
|
||||
const int ne = qspace.GetNE();
|
||||
qf.HostWrite();
|
||||
DenseMatrix values;
|
||||
DenseSymmetricMatrix matrix;
|
||||
for (int iel = 0; iel < ne; ++iel)
|
||||
@@ -818,7 +819,7 @@ void SymmetricMatrixCoefficient::ProjectSymmetric(QuadratureFunction &qf)
|
||||
{
|
||||
const IntegrationPoint &ip = ir[iq];
|
||||
T.SetIntPoint(&ip);
|
||||
matrix.UseExternalData(&values(0, iq), vdim);
|
||||
matrix.UseExternalData(&values(0, iq), height);
|
||||
Eval(matrix, T, ip);
|
||||
}
|
||||
}
|
||||
@@ -828,13 +829,12 @@ void SymmetricMatrixCoefficient::ProjectSymmetric(QuadratureFunction &qf)
|
||||
void SymmetricMatrixCoefficient::Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
mat.SetSize(height);
|
||||
Eval(mat, T, ip);
|
||||
Eval(mat_aux, T, ip);
|
||||
for (int j = 0; j < width; ++j)
|
||||
{
|
||||
for (int i = 0; i < height; ++ i)
|
||||
{
|
||||
K(i, j) = mat(i, j);
|
||||
K(i, j) = mat_aux(i, j);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -989,10 +989,7 @@ void MatrixArrayVectorCoefficient::Eval(DenseMatrix &K,
|
||||
for (int i = 0; i < height; i++)
|
||||
{
|
||||
this->Eval(i, V, T, ip);
|
||||
for (int j = 0; j < width; j++)
|
||||
{
|
||||
K(i,j) = V(j);
|
||||
}
|
||||
K.SetRow(i, V);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1507,6 +1504,295 @@ void CrossCrossCoefficient::Eval(DenseMatrix &M, ElementTransformation &T,
|
||||
M *= ((a == NULL ) ? aConst : a->Eval(T, ip) );
|
||||
}
|
||||
|
||||
|
||||
InverseEstimateCoefficient::InverseEstimateCoefficient(FiniteElementSpace *f)
|
||||
: fes(f), Q(NULL), ir(NULL)
|
||||
{
|
||||
ComputeInverseEstimates();
|
||||
}
|
||||
|
||||
InverseEstimateCoefficient::InverseEstimateCoefficient(FiniteElementSpace *f,
|
||||
Coefficient &q)
|
||||
: fes(f), Q(&q), ir(NULL)
|
||||
{
|
||||
ComputeInverseEstimates();
|
||||
}
|
||||
|
||||
GridFunction *InverseEstimateCoefficient::GetGridFunction()
|
||||
{
|
||||
FiniteElementCollection* fec_ec = new L2_FECollection(0,
|
||||
fes ->GetMesh()->Dimension());
|
||||
FiniteElementSpace *fes_ec = new FiniteElementSpace(fes ->GetMesh(), fec_ec);
|
||||
GridFunction *gf = new GridFunction(fes_ec, elemInvEst.GetData());
|
||||
gf->MakeOwner(fec_ec);
|
||||
return gf;
|
||||
}
|
||||
|
||||
void InverseEstimateCoefficient::ComputeInverseEstimates()
|
||||
{
|
||||
elemInvEst.SetSize(fes -> GetNE());
|
||||
SetIntRule(*fes->GetFE(0));
|
||||
for (int i = 0; i < fes -> GetNE(); i++)
|
||||
{
|
||||
elemInvEst[i] = ElementInverseEstimate(*fes->GetFE(i),
|
||||
*fes->GetElementTransformation(i));
|
||||
}
|
||||
}
|
||||
|
||||
void InverseEstimateCoefficient::SetIntRule(const FiniteElement &el)
|
||||
{
|
||||
ir = &IntRules.Get(el.GetGeomType(), 2*el.GetOrder());
|
||||
}
|
||||
|
||||
real_t InverseEstimateCoefficient::ElementInverseEstimate(
|
||||
const FiniteElement &el,
|
||||
ElementTransformation &Trans)
|
||||
{
|
||||
if (el.GetOrder() < 2)
|
||||
{
|
||||
return std::numeric_limits<real_t>::min();
|
||||
}
|
||||
|
||||
int nd = el.GetDof();
|
||||
int dim = el.GetDim();
|
||||
|
||||
shape.SetSize(nd);
|
||||
dshape.SetSize(nd,dim);
|
||||
laplace.SetSize(nd);
|
||||
|
||||
lapmat.SetSize(nd,nd);
|
||||
bimat.SetSize(nd,nd);
|
||||
ovec.SetSize(nd);
|
||||
|
||||
real_t w,q = 1.0;
|
||||
|
||||
bimat = 0.0;
|
||||
lapmat = 0.0;
|
||||
ovec = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
Trans.SetIntPoint(&ip);
|
||||
w = Trans.Weight()*ip.weight;
|
||||
if (Q)
|
||||
{
|
||||
q = Q->Eval(Trans, ip);
|
||||
}
|
||||
|
||||
el.CalcPhysDShape(Trans, dshape);
|
||||
AddMult_a_AAt(w*q, dshape, lapmat);
|
||||
|
||||
el.CalcPhysLaplacian(Trans, laplace);
|
||||
AddMult_a_VVt(w*q*q, laplace, bimat);
|
||||
|
||||
el.CalcPhysShape(Trans, shape);
|
||||
ovec.Add(w, shape);
|
||||
}
|
||||
ovec *= 1.0/ovec.Norml2();
|
||||
|
||||
// Correct nullspace
|
||||
AddMultVVt(ovec, lapmat);
|
||||
|
||||
// Return largest eigenvalue
|
||||
return bimat.Eigenvalue(lapmat);
|
||||
}
|
||||
|
||||
ElasticInverseEstimateCoefficient
|
||||
::ElasticInverseEstimateCoefficient(FiniteElementSpace *f)
|
||||
: fes(f), Q(NULL), ir(NULL)
|
||||
{
|
||||
ComputeInverseEstimates();
|
||||
}
|
||||
|
||||
ElasticInverseEstimateCoefficient
|
||||
::ElasticInverseEstimateCoefficient(FiniteElementSpace *f,
|
||||
Coefficient &q)
|
||||
: fes(f), Q(&q), ir(NULL)
|
||||
{
|
||||
ComputeInverseEstimates();
|
||||
}
|
||||
|
||||
GridFunction *ElasticInverseEstimateCoefficient::GetGridFunction()
|
||||
{
|
||||
FiniteElementCollection* fec_ec = new L2_FECollection(0,
|
||||
fes ->GetMesh()->Dimension());
|
||||
FiniteElementSpace *fes_ec = new FiniteElementSpace(fes ->GetMesh(), fec_ec);
|
||||
GridFunction *gf = new GridFunction(fes_ec, elemInvEst.GetData());
|
||||
gf->MakeOwner(fec_ec);
|
||||
return gf;
|
||||
}
|
||||
|
||||
void ElasticInverseEstimateCoefficient::ComputeInverseEstimates()
|
||||
{
|
||||
elemInvEst.SetSize(fes -> GetNE());
|
||||
SetIntRule(*fes->GetFE(0));
|
||||
int dim = fes->GetFE(0)->GetDim();
|
||||
|
||||
emat.SetSize(dim,dim);
|
||||
divmat.SetSize(dim,dim);
|
||||
for (int i = 0; i < dim; i++)
|
||||
{
|
||||
for (int j = 0; j < dim; j++)
|
||||
{
|
||||
emat(i,j)= new DenseMatrix();
|
||||
divmat(i,j)= new DenseMatrix();
|
||||
}
|
||||
}
|
||||
|
||||
hmap.SetSize(dim,dim);
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
hmap(0,0) = 0;
|
||||
hmap(0,1) = hmap(1,0) = 1;
|
||||
hmap(1,1) = 2;
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
hmap(0,0) = 0;
|
||||
hmap(0,1) = hmap(1,0) = 1;
|
||||
hmap(0,2) = hmap(2,0) = 2;
|
||||
hmap(1,1) = 3;
|
||||
hmap(1,2) = hmap(2,1) = 4;
|
||||
hmap(2,2) = 5;
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem_error("Only implemented for 2D and 3D");
|
||||
}
|
||||
|
||||
for (int i = 0; i < fes -> GetNE(); i++)
|
||||
{
|
||||
elemInvEst[i] = ElementInverseEstimate(*fes->GetFE(i),
|
||||
*fes->GetElementTransformation(i));
|
||||
}
|
||||
}
|
||||
|
||||
void ElasticInverseEstimateCoefficient::SetIntRule(const FiniteElement &el)
|
||||
{
|
||||
ir = &IntRules.Get(el.GetGeomType(), 2*el.GetOrder());
|
||||
}
|
||||
|
||||
real_t ElasticInverseEstimateCoefficient::ElementInverseEstimate(
|
||||
const FiniteElement &el,
|
||||
ElementTransformation &Trans)
|
||||
{
|
||||
// if (el.GetDerivType() != (int) FiniteElement::HESS)
|
||||
// {
|
||||
// return std::numeric_limits<real_t>::min();
|
||||
// }
|
||||
|
||||
int nd = el.GetDof();
|
||||
int dim = el.GetDim();
|
||||
|
||||
shape.SetSize(nd);
|
||||
dshape.SetSize(nd,dim);
|
||||
hshape.SetSize(nd,dim*(dim+1)/2);
|
||||
|
||||
for (int i = 0; i < dim; i++)
|
||||
{
|
||||
for (int j = 0; j < dim; j++)
|
||||
{
|
||||
emat(i,j)->SetSize(nd,nd);
|
||||
*emat(i,j) = 0.0;
|
||||
divmat(i,j)->SetSize(nd,nd);
|
||||
*divmat(i,j) = 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
real_t w,q = 1.0;
|
||||
for (int ii = 0; ii < ir->GetNPoints(); ii++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(ii);
|
||||
Trans.SetIntPoint(&ip);
|
||||
w = Trans.Weight()*ip.weight;
|
||||
if (Q)
|
||||
{
|
||||
q = Q->Eval(Trans, ip);
|
||||
}
|
||||
|
||||
el.CalcPhysDShape(Trans, dshape);
|
||||
for (int i = 0; i < dim; i++)
|
||||
{
|
||||
for (int j = 0; j < dim; j++)
|
||||
{
|
||||
AddMult_a_VVt(w*q, Vector(dshape.GetColumn(i),nd), *emat(j,j));
|
||||
|
||||
AddMult_a_VWt(w*q, Vector(dshape.GetColumn(i),nd),
|
||||
Vector(dshape.GetColumn(j),nd), *emat(j,i));
|
||||
|
||||
AddMult_a_VWt(w*q, Vector(dshape.GetColumn(j),nd),
|
||||
Vector(dshape.GetColumn(i),nd), *emat(i,j));
|
||||
|
||||
AddMult_a_VVt(w*q, Vector(dshape.GetColumn(j),nd), *emat(i,i));
|
||||
}
|
||||
}
|
||||
|
||||
el.CalcPhysHessian(Trans, hshape);
|
||||
for (int i = 0; i < dim; i++)
|
||||
{
|
||||
for (int j = 0; j < dim; j++)
|
||||
{
|
||||
for (int k = 0; k < dim; k++)
|
||||
{
|
||||
AddMult_a_VWt(w*q*q, Vector(hshape.GetColumn(hmap(i,i)),nd),
|
||||
Vector(hshape.GetColumn(hmap(k,k)),nd), *divmat(j,j));
|
||||
|
||||
AddMult_a_VWt(w*q*q, Vector(hshape.GetColumn(hmap(i,i)),nd),
|
||||
Vector(hshape.GetColumn(hmap(k,j)),nd), *divmat(j,k));
|
||||
|
||||
AddMult_a_VWt(w*q*q, Vector(hshape.GetColumn(hmap(i,j)),nd),
|
||||
Vector(hshape.GetColumn(hmap(k,k)),nd), *divmat(i,j));
|
||||
|
||||
AddMult_a_VWt(w*q*q, Vector(hshape.GetColumn(hmap(i,j)),nd),
|
||||
Vector(hshape.GetColumn(hmap(k,j)),nd), *divmat(i,k));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Collect matrices
|
||||
emat_tot.SetSize(nd*dim,nd*dim);
|
||||
divmat_tot.SetSize(nd*dim,nd*dim);
|
||||
for (int i = 0; i < dim; i++)
|
||||
{
|
||||
for (int j = 0; j < dim; j++)
|
||||
{
|
||||
emat_tot .SetSubMatrix(i*nd, j*nd, *emat(i,j));
|
||||
divmat_tot.SetSubMatrix(i*nd, j*nd, *divmat(i,j));
|
||||
}
|
||||
}
|
||||
|
||||
// Correct nullspace
|
||||
DenseMatrix ns;
|
||||
emat_tot.NullSpace(ns, 1e-10);
|
||||
for (int i = 0; i < ns.Width(); i++)
|
||||
{
|
||||
AddMultVVt(Vector(ns.GetColumn(i),nd*dim), emat_tot);
|
||||
}
|
||||
|
||||
// Return largest eigenvalue
|
||||
return divmat_tot.Eigenvalue(emat_tot);
|
||||
}
|
||||
|
||||
ElasticInverseEstimateCoefficient::~ElasticInverseEstimateCoefficient()
|
||||
{
|
||||
for (int i = 0; i < emat.NumRows(); i++)
|
||||
{
|
||||
for (int j = 0; j < emat.NumCols(); j++)
|
||||
{
|
||||
delete emat(i,j);
|
||||
}
|
||||
}
|
||||
for (int i = 0; i < divmat.NumRows(); i++)
|
||||
{
|
||||
for (int j = 0; j < divmat.NumCols(); j++)
|
||||
{
|
||||
delete divmat(i,j);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
real_t LpNormLoop(real_t p, Coefficient &coeff, Mesh &mesh,
|
||||
const IntegrationRule *irs[])
|
||||
{
|
||||
|
||||
+132
-5
@@ -1352,7 +1352,7 @@ public:
|
||||
/// Set the time for internally stored coefficients
|
||||
void SetTime(real_t t) override;
|
||||
|
||||
/// Get the coefficient located at (i,j) in the matrix.
|
||||
/// Get the vector coefficient located at the i-th row of the matrix
|
||||
VectorCoefficient* GetCoeff (int i) { return Coeff[i]; }
|
||||
|
||||
/** @brief Set the coefficient located at the i-th row of the matrix.
|
||||
@@ -1466,12 +1466,13 @@ public:
|
||||
class SymmetricMatrixCoefficient : public MatrixCoefficient
|
||||
{
|
||||
protected:
|
||||
|
||||
/// Internal matrix used when evaluating this coefficient as a DenseMatrix.
|
||||
DenseSymmetricMatrix mat;
|
||||
mutable DenseSymmetricMatrix mat_aux;
|
||||
public:
|
||||
/// Construct a dim x dim matrix coefficient.
|
||||
explicit SymmetricMatrixCoefficient(int dimension)
|
||||
: MatrixCoefficient(dimension, true) { }
|
||||
: MatrixCoefficient(dimension, true), mat_aux(height) { }
|
||||
|
||||
/// Get the size of the matrix.
|
||||
int GetSize() const { return height; }
|
||||
@@ -1504,8 +1505,9 @@ public:
|
||||
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
|
||||
/// Return a reference to the constant matrix.
|
||||
const DenseSymmetricMatrix& GetMatrix() { return mat; }
|
||||
|
||||
/// @deprecated Return a reference to the internal matrix used when evaluating this coefficient as a DenseMatrix.
|
||||
MFEM_DEPRECATED const DenseSymmetricMatrix& GetMatrix() { return mat_aux; }
|
||||
|
||||
virtual ~SymmetricMatrixCoefficient() { }
|
||||
};
|
||||
@@ -1525,6 +1527,10 @@ public:
|
||||
/// Evaluate the matrix coefficient at @a ip.
|
||||
virtual void Eval(DenseSymmetricMatrix &M, ElementTransformation &T,
|
||||
const IntegrationPoint &ip) { M = mat; }
|
||||
|
||||
/// Return a reference to the constant matrix.
|
||||
const DenseSymmetricMatrix& GetMatrix() { return mat; }
|
||||
|
||||
};
|
||||
|
||||
|
||||
@@ -2322,6 +2328,127 @@ public:
|
||||
};
|
||||
///@}
|
||||
|
||||
/** @brief
|
||||
*/
|
||||
class InverseEstimateCoefficient : public Coefficient
|
||||
{
|
||||
private:
|
||||
///
|
||||
Vector elemInvEst;
|
||||
/// FE space on which the grid function lives. Owned if #fec is not NULL.
|
||||
FiniteElementSpace *fes;
|
||||
|
||||
///
|
||||
const IntegrationRule *ir;
|
||||
|
||||
///
|
||||
Coefficient *Q;
|
||||
Vector laplace, shape, ovec, evec;
|
||||
DenseMatrix dshape, lapmat, bimat;
|
||||
|
||||
///
|
||||
void SetIntRule(const FiniteElement &el);
|
||||
|
||||
///
|
||||
void ComputeInverseEstimates();
|
||||
|
||||
real_t ElementInverseEstimate(const FiniteElement &el,
|
||||
ElementTransformation &Trans);
|
||||
|
||||
public:
|
||||
///
|
||||
InverseEstimateCoefficient(FiniteElementSpace *f);
|
||||
InverseEstimateCoefficient(FiniteElementSpace *f, Coefficient &q);
|
||||
|
||||
/// Caller gets owner ship of GridFunction and
|
||||
GridFunction *GetGridFunction();
|
||||
|
||||
/// Reset the scalar factor
|
||||
void SetDiffusion(Coefficient &q)
|
||||
{
|
||||
if (Q != &q)
|
||||
{
|
||||
Q = &q;
|
||||
ComputeInverseEstimates();
|
||||
}
|
||||
}
|
||||
/// Return the scalar factor
|
||||
Coefficient * GetDiffusion() const { return Q; }
|
||||
|
||||
/// Evaluate the coefficient at @a ip.
|
||||
virtual real_t Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{ return elemInvEst[T.ElementNo]; }
|
||||
|
||||
};
|
||||
|
||||
class ElasticInverseEstimateCoefficient : public Coefficient
|
||||
{
|
||||
private:
|
||||
///
|
||||
Vector elemInvEst;
|
||||
/// FE space on which the grid function lives. Owned if #fec is not NULL.
|
||||
FiniteElementSpace *fes;
|
||||
|
||||
///
|
||||
const IntegrationRule *ir;
|
||||
|
||||
///
|
||||
Coefficient *Q;
|
||||
Vector shape, ovec, evec;
|
||||
DenseMatrix dshape, hshape, emat_tot, divmat_tot;
|
||||
Array2D<DenseMatrix*> emat,divmat;
|
||||
Array2D<int> hmap;
|
||||
|
||||
///
|
||||
void SetIntRule(const FiniteElement &el);
|
||||
|
||||
///
|
||||
void ComputeInverseEstimates();
|
||||
|
||||
///
|
||||
real_t ElementInverseEstimate(const FiniteElement &el,
|
||||
ElementTransformation &Trans);
|
||||
|
||||
public:
|
||||
///
|
||||
ElasticInverseEstimateCoefficient(FiniteElementSpace *f);
|
||||
ElasticInverseEstimateCoefficient(FiniteElementSpace *f, Coefficient &q);
|
||||
|
||||
/// Caller gets owner ship of GridFunction and
|
||||
GridFunction *GetGridFunction();
|
||||
|
||||
/// Reset the scalar factor
|
||||
void SetDiffusion(Coefficient &q)
|
||||
{
|
||||
if (Q != &q)
|
||||
{
|
||||
Q = &q;
|
||||
ComputeInverseEstimates();
|
||||
}
|
||||
}
|
||||
void SetShearModulus(Coefficient &q) { SetDiffusion(q);}
|
||||
|
||||
/// Return the scalar factor
|
||||
Coefficient * GetDiffusion() const { return Q; }
|
||||
Coefficient * GetModulus() const { return GetDiffusion(); }
|
||||
|
||||
/// Evaluate the coefficient at @a ip.
|
||||
virtual real_t Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{ return elemInvEst[T.ElementNo]; }
|
||||
|
||||
// Destructor
|
||||
~ElasticInverseEstimateCoefficient();
|
||||
|
||||
};
|
||||
|
||||
|
||||
///@}
|
||||
|
||||
|
||||
|
||||
|
||||
/** @brief Vector quadrature function coefficient which requires that the
|
||||
quadrature rules used for this vector coefficient be the same as those that
|
||||
live within the supplied QuadratureFunction. */
|
||||
|
||||
+3
-12
@@ -1243,25 +1243,16 @@ ParSesquilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
HypreParMatrix * Ah;
|
||||
A_i.Get(Ah);
|
||||
hypre_ParCSRMatrix *Aih = *Ah;
|
||||
#if !defined(HYPRE_USING_GPU)
|
||||
ess_tdof_list.HostRead();
|
||||
for (int k = 0; k < n; k++)
|
||||
{
|
||||
const int j = ess_tdof_list[k];
|
||||
Aih->diag->data[Aih->diag->i[j]] = 0.0;
|
||||
}
|
||||
#else
|
||||
Ah->HypreReadWrite();
|
||||
const int *d_ess_tdof_list =
|
||||
ess_tdof_list.GetMemory().Read(MemoryClass::DEVICE, n);
|
||||
const int *d_diag_i = Aih->diag->i;
|
||||
ess_tdof_list.GetMemory().Read(GetHypreMemoryClass(), n);
|
||||
HYPRE_Int *d_diag_i = Aih->diag->i;
|
||||
real_t *d_diag_data = Aih->diag->data;
|
||||
MFEM_GPU_FORALL(k, n,
|
||||
mfem::hypre_forall(n, [=] MFEM_HOST_DEVICE (int k)
|
||||
{
|
||||
const int j = d_ess_tdof_list[k];
|
||||
d_diag_data[d_diag_i[j]] = 0.0;
|
||||
});
|
||||
#endif
|
||||
}
|
||||
else
|
||||
{
|
||||
|
||||
+11
-1
@@ -1,8 +1,18 @@
|
||||
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "convergence.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
|
||||
+2
-2
@@ -101,7 +101,7 @@ void DGMassInverse::SetRelTol(const real_t rel_tol_) { rel_tol = rel_tol_; }
|
||||
|
||||
void DGMassInverse::SetAbsTol(const real_t abs_tol_) { abs_tol = abs_tol_; }
|
||||
|
||||
void DGMassInverse::SetMaxIter(const real_t max_iter_) { max_iter = max_iter_; }
|
||||
void DGMassInverse::SetMaxIter(const int max_iter_) { max_iter = max_iter_; }
|
||||
|
||||
void DGMassInverse::Update()
|
||||
{
|
||||
@@ -137,7 +137,7 @@ void DGMassInverse::DGMassCGIteration(const Vector &b_, Vector &u_) const
|
||||
|
||||
const real_t RELTOL = rel_tol;
|
||||
const real_t ABSTOL = abs_tol;
|
||||
const real_t MAXIT = max_iter;
|
||||
const int MAXIT = max_iter;
|
||||
const bool IT_MODE = iterative_mode;
|
||||
const bool CHANGE_BASIS = (d2q != nullptr);
|
||||
|
||||
|
||||
+1
-1
@@ -96,7 +96,7 @@ public:
|
||||
/// Set the absolute tolerance.
|
||||
void SetAbsTol(const real_t abs_tol_);
|
||||
/// Set the maximum number of iterations.
|
||||
void SetMaxIter(const real_t max_iter_);
|
||||
void SetMaxIter(const int max_iter_);
|
||||
/// Recompute operator and preconditioner (when coefficient or mesh changes).
|
||||
void Update();
|
||||
|
||||
|
||||
+17
-2
@@ -52,6 +52,15 @@ protected:
|
||||
const DenseMatrix &EvalTransAdjugateJ();
|
||||
const DenseMatrix &EvalInverseJ();
|
||||
|
||||
/// @name Tolerance used for point comparisons
|
||||
///@{
|
||||
#ifdef MFEM_USE_DOUBLE
|
||||
static constexpr real_t tol_0 = 1e-15;
|
||||
#elif defined(MFEM_USE_SINGLE)
|
||||
static constexpr real_t tol_0 = 1e-7;
|
||||
#endif
|
||||
///@}
|
||||
|
||||
public:
|
||||
|
||||
/** This enumeration declares the values stored in
|
||||
@@ -176,7 +185,7 @@ public:
|
||||
returned. This method is not 100 percent reliable for non-linear
|
||||
transformations. */
|
||||
virtual int TransformBack(const Vector &pt, IntegrationPoint &ip,
|
||||
const real_t phys_tol = 1e-15) = 0;
|
||||
const real_t phys_tol = tol_0) = 0;
|
||||
|
||||
virtual ~ElementTransformation() { }
|
||||
};
|
||||
@@ -281,9 +290,15 @@ public:
|
||||
rel_qpts_order(-1),
|
||||
solver_type(NewtonElementProject),
|
||||
max_iter(16),
|
||||
#ifdef MFEM_USE_DOUBLE
|
||||
ref_tol(1e-15),
|
||||
phys_rtol(1e-15),
|
||||
ip_tol(1e-8),
|
||||
#elif defined(MFEM_USE_SINGLE)
|
||||
ref_tol(1e-7),
|
||||
phys_rtol(1e-7),
|
||||
ip_tol(1e-4),
|
||||
#endif
|
||||
print_level(-1)
|
||||
{ }
|
||||
|
||||
@@ -449,7 +464,7 @@ public:
|
||||
returned. This method is not 100 percent reliable for non-linear
|
||||
transformations. */
|
||||
virtual int TransformBack(const Vector & v, IntegrationPoint & ip,
|
||||
const real_t phys_rel_tol = 1e-15)
|
||||
const real_t phys_rel_tol = tol_0)
|
||||
{
|
||||
InverseElementTransformation inv_tr(this);
|
||||
inv_tr.SetPhysicalRelTol(phys_rel_tol);
|
||||
|
||||
@@ -13,6 +13,7 @@
|
||||
#define MFEM_FACE_MAP_UTILS_HPP
|
||||
|
||||
#include "../../general/array.hpp"
|
||||
#include "../../general/backends.hpp"
|
||||
#include <utility> // std::pair
|
||||
#include <vector>
|
||||
|
||||
@@ -51,6 +52,189 @@ void FillFaceMap(const int n_face_dofs_per_component,
|
||||
void GetTensorFaceMap(const int dim, const int order, const int face_id,
|
||||
Array<int> &face_map);
|
||||
|
||||
/// @brief Given a face DOF index in native (counter-clockwise) ordering, return
|
||||
/// the corresponding DOF index in lexicographic ordering (for a quadrilateral
|
||||
/// element).
|
||||
MFEM_HOST_DEVICE
|
||||
inline int ToLexOrdering2D(const int face_id, const int size1d, const int i)
|
||||
{
|
||||
if (face_id==2 || face_id==3)
|
||||
{
|
||||
return size1d-1-i;
|
||||
}
|
||||
else
|
||||
{
|
||||
return i;
|
||||
}
|
||||
}
|
||||
|
||||
/// @brief Given a face DOF index on a shared face, ordered lexicographically
|
||||
/// relative to element 1, return the corresponding face DOF index ordered
|
||||
/// lexicographically relative to element 2.
|
||||
MFEM_HOST_DEVICE
|
||||
inline int PermuteFace2D(const int face_id1, const int face_id2,
|
||||
const int orientation, const int size1d,
|
||||
const int index)
|
||||
{
|
||||
int new_index;
|
||||
// Convert from element 1 lex ordering to native ordering
|
||||
if (face_id1 == 2 || face_id1 == 3)
|
||||
{
|
||||
new_index = size1d-1-index;
|
||||
}
|
||||
else
|
||||
{
|
||||
new_index = index;
|
||||
}
|
||||
// Permute based on face orientations
|
||||
if (orientation == 1)
|
||||
{
|
||||
new_index = size1d-1-new_index;
|
||||
}
|
||||
// Covert to element 2 lex ordering
|
||||
return ToLexOrdering2D(face_id2, size1d, new_index);
|
||||
}
|
||||
|
||||
/// @brief Given a face DOF index in native (counter-clockwise) ordering, return
|
||||
/// the corresponding DOF index in lexicographic ordering (for a hexahedral
|
||||
/// element).
|
||||
MFEM_HOST_DEVICE
|
||||
inline int ToLexOrdering3D(const int face_id, const int size1d, const int i,
|
||||
const int j)
|
||||
{
|
||||
if (face_id==2 || face_id==1 || face_id==5)
|
||||
{
|
||||
return i + j*size1d;
|
||||
}
|
||||
else if (face_id==3 || face_id==4)
|
||||
{
|
||||
return (size1d-1-i) + j*size1d;
|
||||
}
|
||||
else // face_id==0
|
||||
{
|
||||
return i + (size1d-1-j)*size1d;
|
||||
}
|
||||
}
|
||||
|
||||
/// @brief Given the index of a face DOF in lexicographic ordering relative
|
||||
/// element 1, permute the index so that it is lexicographically ordered
|
||||
/// relative to element 2.
|
||||
///
|
||||
/// The given face corresponds to local face index @a face_id1 relative to
|
||||
/// element 1, and @a face_id2 (with @a orientation) relative to element 2.
|
||||
MFEM_HOST_DEVICE
|
||||
inline int PermuteFace3D(const int face_id1, const int face_id2,
|
||||
const int orientation,
|
||||
const int size1d, const int index)
|
||||
{
|
||||
int i=0, j=0, new_i=0, new_j=0;
|
||||
i = index%size1d;
|
||||
j = index/size1d;
|
||||
// Convert from lex ordering
|
||||
if (face_id1==3 || face_id1==4)
|
||||
{
|
||||
i = size1d-1-i;
|
||||
}
|
||||
else if (face_id1==0)
|
||||
{
|
||||
j = size1d-1-j;
|
||||
}
|
||||
// Permute based on face orientations
|
||||
switch (orientation)
|
||||
{
|
||||
case 0:
|
||||
new_i = i;
|
||||
new_j = j;
|
||||
break;
|
||||
case 1:
|
||||
new_i = j;
|
||||
new_j = i;
|
||||
break;
|
||||
case 2:
|
||||
new_i = j;
|
||||
new_j = (size1d-1-i);
|
||||
break;
|
||||
case 3:
|
||||
new_i = (size1d-1-i);
|
||||
new_j = j;
|
||||
break;
|
||||
case 4:
|
||||
new_i = (size1d-1-i);
|
||||
new_j = (size1d-1-j);
|
||||
break;
|
||||
case 5:
|
||||
new_i = (size1d-1-j);
|
||||
new_j = (size1d-1-i);
|
||||
break;
|
||||
case 6:
|
||||
new_i = (size1d-1-j);
|
||||
new_j = i;
|
||||
break;
|
||||
case 7:
|
||||
new_i = i;
|
||||
new_j = (size1d-1-j);
|
||||
break;
|
||||
}
|
||||
return ToLexOrdering3D(face_id2, size1d, new_i, new_j);
|
||||
}
|
||||
|
||||
/// @brief Given a face DOF (or quadrature) index ordered lexicographically
|
||||
/// relative to element 1, return the associated (i, j) coordinates.
|
||||
///
|
||||
/// The returned coordinates will be relative to element 1 or element 2
|
||||
/// according to the value of side (side == 0 corresponds element 1).
|
||||
MFEM_HOST_DEVICE
|
||||
inline void FaceIdxToVolIdx2D(const int qi, const int nq, const int face_id0,
|
||||
const int face_id1, const int side, int &i, int &j)
|
||||
{
|
||||
// Note: in 2D, a consistently ordered mesh will always have the element 2
|
||||
// face reversed relative to element 1, so orientation is determined entirely
|
||||
// by side. (In 3D, separate orientation information is needed).
|
||||
const int orientation = side;
|
||||
|
||||
const int face_id = (side == 0) ? face_id0 : face_id1;
|
||||
const int edge_idx = (side == 0) ? qi : PermuteFace2D(face_id0, face_id1,
|
||||
orientation, nq, qi);
|
||||
|
||||
const int level = (face_id == 0 || face_id == 3) ? 0 : (nq-1);
|
||||
const bool x_axis = (face_id == 0 || face_id == 2);
|
||||
|
||||
i = x_axis ? edge_idx : level;
|
||||
j = x_axis ? level : edge_idx;
|
||||
}
|
||||
|
||||
/// @brief Given a face DOF (or quadrature) index ordered lexicographically
|
||||
/// relative to element 1, return the associated (i, j, k) coordinates.
|
||||
///
|
||||
/// The returned coordinates will be relative to element 1 or element 2
|
||||
/// according to the value of side (side == 0 corresponds element 1).
|
||||
MFEM_HOST_DEVICE
|
||||
inline void FaceIdxToVolIdx3D(const int index, const int size1d,
|
||||
const int face_id0, const int face_id1,
|
||||
const int side, const int orientation,
|
||||
int& i, int& j, int& k)
|
||||
{
|
||||
MFEM_VERIFY_KERNEL(face_id1 >= 0 || side == 0,
|
||||
"Accessing second side but face_id1 is not valid.");
|
||||
|
||||
const int face_id = (side == 0) ? face_id0 : face_id1;
|
||||
const int fidx = (side == 0) ? index
|
||||
: PermuteFace3D(face_id0, face_id1, orientation, size1d, index);
|
||||
|
||||
const bool xy_plane = (face_id == 0 || face_id == 5);
|
||||
const bool yz_plane = (face_id == 2 || face_id == 4);
|
||||
|
||||
const int level = (face_id == 0 || face_id == 1 || face_id == 4)
|
||||
? 0 : (size1d-1);
|
||||
|
||||
const int _i = fidx % size1d;
|
||||
const int _j = fidx / size1d;
|
||||
|
||||
k = xy_plane ? level : _j;
|
||||
j = yz_plane ? _i : xy_plane ? _j : level;
|
||||
i = yz_plane ? level : _i;
|
||||
}
|
||||
|
||||
} // namespace internal
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
+8
-8
@@ -221,7 +221,7 @@ void FiniteElement::CalcPhysLaplacian(ElementTransformation &Trans,
|
||||
{
|
||||
for (int nd = 0; nd < dof; nd++)
|
||||
{
|
||||
Laplacian[nd] = hess(nd,0) + hess(nd,4) + hess(nd,5);
|
||||
Laplacian[nd] = hess(nd,0) + hess(nd,3) + hess(nd,5);
|
||||
}
|
||||
}
|
||||
else if (dim == 2)
|
||||
@@ -259,10 +259,10 @@ void FiniteElement::CalcPhysLinLaplacian(ElementTransformation &Trans,
|
||||
scale[1] = 2*Gij(0,1);
|
||||
scale[2] = 2*Gij(0,2);
|
||||
|
||||
scale[3] = 2*Gij(1,2);
|
||||
scale[4] = Gij(2,2);
|
||||
scale[3] = Gij(1,1);
|
||||
scale[4] = 2*Gij(1,2);
|
||||
|
||||
scale[5] = Gij(1,1);
|
||||
scale[5] = Gij(2,2);
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
@@ -299,12 +299,12 @@ void FiniteElement::CalcPhysHessian(ElementTransformation &Trans,
|
||||
map[2] = 2;
|
||||
|
||||
map[3] = 1;
|
||||
map[4] = 5;
|
||||
map[5] = 3;
|
||||
map[4] = 3;
|
||||
map[5] = 4;
|
||||
|
||||
map[6] = 2;
|
||||
map[7] = 3;
|
||||
map[8] = 4;
|
||||
map[7] = 4;
|
||||
map[8] = 5;
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
|
||||
+30
-28
@@ -299,7 +299,8 @@ public:
|
||||
NONE, ///< No derivatives implemented
|
||||
GRAD, ///< Implements CalcDShape methods
|
||||
DIV, ///< Implements CalcDivShape methods
|
||||
CURL ///< Implements CalcCurlShape methods
|
||||
CURL, ///< Implements CalcCurlShape methods
|
||||
HESS ///< Implements CalcHessian & CalcDShape methods
|
||||
};
|
||||
|
||||
/** @brief Construct FiniteElement with given
|
||||
@@ -316,7 +317,7 @@ public:
|
||||
int GetDim() const { return dim; }
|
||||
|
||||
/** @brief Returns the vector dimension for vector-valued finite elements,
|
||||
which is also the dimension of the interpolation operatrion. */
|
||||
which is also the dimension of the interpolation operation. */
|
||||
int GetRangeDim() const { return vdim; }
|
||||
|
||||
/// Returns the dimension of the curl for vector-valued finite elements.
|
||||
@@ -356,7 +357,7 @@ public:
|
||||
|
||||
/** @brief Returns the FiniteElement::DerivType of the element describing the
|
||||
spatial derivative method implemented, one of {NONE, GRAD,
|
||||
DIV, CURL}. */
|
||||
DIV, CURL, HESS}. */
|
||||
int GetDerivType() const { return deriv_type; }
|
||||
|
||||
/** @brief Returns the FiniteElement::DerivType of the element describing how
|
||||
@@ -394,7 +395,32 @@ public:
|
||||
/// Get a const reference to the nodes of the element
|
||||
const IntegrationRule & GetNodes() const { return Nodes; }
|
||||
|
||||
// virtual functions for finite elements on vector spaces
|
||||
/** @brief Evaluate the Hessians of all shape functions of a scalar finite
|
||||
element in reference space at the given point @a ip. */
|
||||
/** Each row of the result DenseMatrix @a Hessian contains upper triangular
|
||||
part of the Hessian of one shape function.
|
||||
The order in 2D is {u_xx, u_xy, u_yy}.
|
||||
The size (#dof x (#dim (#dim+1)/2) of @a Hessian must be set in advance.*/
|
||||
virtual void CalcHessian(const IntegrationPoint &ip,
|
||||
DenseMatrix &Hessian) const;
|
||||
|
||||
/** @brief Evaluate the Hessian of all shape functions of a scalar finite
|
||||
element in physical space at the given point @a ip. */
|
||||
/** The size (#dof, #dim*(#dim+1)/2) of @a Hessian must be set in advance. */
|
||||
void CalcPhysHessian(ElementTransformation &Trans,
|
||||
DenseMatrix& Hessian) const;
|
||||
|
||||
/** @brief Evaluate the Laplacian of all shape functions of a scalar finite
|
||||
element in physical space at the given point @a ip. */
|
||||
/** The size (#dof) of @a Laplacian must be set in advance. */
|
||||
void CalcPhysLaplacian(ElementTransformation &Trans,
|
||||
Vector& Laplacian) const;
|
||||
|
||||
/** @brief Evaluate the Laplacian of all shape functions of a scalar finite
|
||||
element in physical space at the given point @a ip. */
|
||||
/** The size (#dof) of @a Laplacian must be set in advance. */
|
||||
void CalcPhysLinLaplacian(ElementTransformation &Trans,
|
||||
Vector& Laplacian) const;
|
||||
|
||||
/** @brief Evaluate the values of all shape functions of a *vector* finite
|
||||
element in reference space at the given point @a ip. */
|
||||
@@ -454,30 +480,6 @@ public:
|
||||
*/
|
||||
virtual void GetFaceDofs(int face, int **dofs, int *ndofs) const;
|
||||
|
||||
/** @brief Evaluate the Hessians of all shape functions of a scalar finite
|
||||
element in reference space at the given point @a ip. */
|
||||
/** Each row of the result DenseMatrix @a Hessian contains upper triangular
|
||||
part of the Hessian of one shape function.
|
||||
The order in 2D is {u_xx, u_xy, u_yy}.
|
||||
The size (#dof x (#dim (#dim+1)/2) of @a Hessian must be set in advance.*/
|
||||
virtual void CalcHessian(const IntegrationPoint &ip,
|
||||
DenseMatrix &Hessian) const;
|
||||
|
||||
/** @brief Evaluate the Hessian of all shape functions of a scalar finite
|
||||
element in reference space at the given point @a ip. */
|
||||
/** The size (#dof, #dim*(#dim+1)/2) of @a Hessian must be set in advance. */
|
||||
virtual void CalcPhysHessian(ElementTransformation &Trans,
|
||||
DenseMatrix& Hessian) const;
|
||||
|
||||
/** @brief Evaluate the Laplacian of all shape functions of a scalar finite
|
||||
element in reference space at the given point @a ip. */
|
||||
/** The size (#dof) of @a Laplacian must be set in advance. */
|
||||
virtual void CalcPhysLaplacian(ElementTransformation &Trans,
|
||||
Vector& Laplacian) const;
|
||||
|
||||
virtual void CalcPhysLinLaplacian(ElementTransformation &Trans,
|
||||
Vector& Laplacian) const;
|
||||
|
||||
/** @brief Return the local interpolation matrix @a I (Dof x Dof) where the
|
||||
fine element is the image of the base geometry under the given
|
||||
transformation. */
|
||||
|
||||
+624
-11
@@ -349,10 +349,10 @@ void NURBS3DFiniteElement::CalcHessian (const IntegrationPoint &ip,
|
||||
d2sum[1] += ( hessian(o,1) = dsx*dsy*sz*weights(o) );
|
||||
d2sum[2] += ( hessian(o,2) = dsx*sy*dsz*weights(o) );
|
||||
|
||||
d2sum[3] += ( hessian(o,3) = sx*dsy*dsz*weights(o) );
|
||||
d2sum[3] += ( hessian(o,3) = sx*d2sy*sz*weights(o) );
|
||||
d2sum[4] += ( hessian(o,4) = sx*dsy*dsz*weights(o) );
|
||||
|
||||
d2sum[4] += ( hessian(o,4) = sx*sy*d2sz*weights(o) );
|
||||
d2sum[5] += ( hessian(o,5) = sx*d2sy*sz*weights(o) );
|
||||
d2sum[5] += ( hessian(o,5) = sx*sy*d2sz*weights(o) );
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -387,19 +387,632 @@ void NURBS3DFiniteElement::CalcHessian (const IntegrationPoint &ip,
|
||||
+ u[o]*sum*(2*dsum[0]*dsum[2] - d2sum[2]);
|
||||
|
||||
hessian(o,3) = hessian(o,3)*sum
|
||||
- du(o,1)*sum*dsum[2]
|
||||
- du(o,2)*sum*dsum[1]
|
||||
+ u[o]*sum*(2*dsum[1]*dsum[2] - d2sum[3]);
|
||||
- 2*du(o,1)*sum*dsum[1]
|
||||
+ u[o]*sum*(2*dsum[1]*dsum[1] - d2sum[3]);
|
||||
|
||||
hessian(o,4) = hessian(o,4)*sum
|
||||
- 2*du(o,2)*sum*dsum[2]
|
||||
+ u[o]*sum*(2*dsum[2]*dsum[2] - d2sum[4]);
|
||||
- du(o,1)*sum*dsum[2]
|
||||
- du(o,2)*sum*dsum[1]
|
||||
+ u[o]*sum*(2*dsum[1]*dsum[2] - d2sum[4]);
|
||||
|
||||
hessian(o,5) = hessian(o,5)*sum
|
||||
- 2*du(o,1)*sum*dsum[1]
|
||||
+ u[o]*sum*(2*dsum[1]*dsum[1] - d2sum[5]);
|
||||
|
||||
- 2*du(o,2)*sum*dsum[2]
|
||||
+ u[o]*sum*(2*dsum[2]*dsum[2] - d2sum[5]);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void NURBS_HDiv2DFiniteElement::SetOrder() const
|
||||
{
|
||||
orders[0] = kv[0]->GetOrder();
|
||||
orders[1] = kv[1]->GetOrder();
|
||||
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
|
||||
kv1[0] = kv[0]->DegreeElevate(1);
|
||||
kv1[1] = kv[1]->DegreeElevate(1);
|
||||
|
||||
shape_x.SetSize(orders[0]+1);
|
||||
shape_y.SetSize(orders[1]+1);
|
||||
|
||||
dshape_x.SetSize(orders[0]+1);
|
||||
dshape_y.SetSize(orders[1]+1);
|
||||
|
||||
d2shape_x.SetSize(orders[0]+1);
|
||||
d2shape_y.SetSize(orders[1]+1);
|
||||
|
||||
shape1_x.SetSize(orders[0]+2);
|
||||
shape1_y.SetSize(orders[1]+2);
|
||||
|
||||
dshape1_x.SetSize(orders[0]+2);
|
||||
dshape1_y.SetSize(orders[1]+2);
|
||||
|
||||
d2shape1_x.SetSize(orders[0]+2);
|
||||
d2shape1_y.SetSize(orders[1]+2);
|
||||
|
||||
order = max(orders[0]+1, orders[1]+1);
|
||||
dof = (orders[0] + 2)*(orders[1] + 1)
|
||||
+ (orders[1] + 1)*(orders[1] + 2);
|
||||
u.SetSize(dof);
|
||||
du.SetSize(dof);
|
||||
weights.SetSize(dof);
|
||||
}
|
||||
|
||||
void NURBS_HDiv2DFiniteElement::CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
kv[0]->CalcShape(shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape(shape_y, ijk[1], ip.y);
|
||||
|
||||
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
|
||||
|
||||
int o = 0;
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy = shape_y(j);
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
shape(o,0) = shape1_x(i)*sy;
|
||||
shape(o,1) = 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1 = shape1_y(j);
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
shape(o,0) = 0.0;
|
||||
shape(o,1) = shape_x(i)*sy1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void NURBS_HDiv2DFiniteElement::CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
CalcVShape(Trans.GetIntPoint(), shape);
|
||||
const DenseMatrix & J = Trans.Jacobian();
|
||||
MFEM_ASSERT(J.Width() == 2 && J.Height() == 2,
|
||||
"NURBS_HDiv2DFiniteElement cannot be embedded in "
|
||||
"3 dimensional spaces");
|
||||
for (int i=0; i<dof; i++)
|
||||
{
|
||||
real_t sx = shape(i, 0);
|
||||
real_t sy = shape(i, 1);
|
||||
shape(i, 0) = sx * J(0, 0) + sy * J(0, 1);
|
||||
shape(i, 1) = sx * J(1, 0) + sy * J(1, 1);
|
||||
}
|
||||
shape *= (1.0 / Trans.Weight());
|
||||
}
|
||||
|
||||
void NURBS_HDiv2DFiniteElement::CalcDivShape(const IntegrationPoint &ip,
|
||||
Vector &divshape) const
|
||||
{
|
||||
kv[0]->CalcShape ( shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape ( shape_y, ijk[1], ip.y);
|
||||
|
||||
kv1[0]->CalcDShape(dshape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcDShape(dshape1_y, ijk[1], ip.y);
|
||||
|
||||
int o = 0;
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy = shape_y(j);
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
divshape(o) = dshape1_x(i)*sy;
|
||||
}
|
||||
}
|
||||
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t dsy1 = dshape1_y(j);
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
divshape(o) = shape_x(i)*dsy1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
NURBS_HDiv2DFiniteElement::~NURBS_HDiv2DFiniteElement()
|
||||
{
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
}
|
||||
|
||||
|
||||
void NURBS_HDiv3DFiniteElement::SetOrder() const
|
||||
{
|
||||
orders[0] = kv[0]->GetOrder();
|
||||
orders[1] = kv[1]->GetOrder();
|
||||
orders[2] = kv[2]->GetOrder();
|
||||
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
if (kv1[2]) { delete kv1[2]; }
|
||||
|
||||
kv1[0] = kv[0]->DegreeElevate(1);
|
||||
kv1[1] = kv[1]->DegreeElevate(1);
|
||||
kv1[2] = kv[2]->DegreeElevate(1);
|
||||
|
||||
shape_x.SetSize(orders[0]+1);
|
||||
shape_y.SetSize(orders[1]+1);
|
||||
shape_z.SetSize(orders[2]+1);
|
||||
|
||||
dshape_x.SetSize(orders[0]+1);
|
||||
dshape_y.SetSize(orders[1]+1);
|
||||
dshape_z.SetSize(orders[2]+1);
|
||||
|
||||
d2shape_x.SetSize(orders[0]+1);
|
||||
d2shape_y.SetSize(orders[1]+1);
|
||||
d2shape_z.SetSize(orders[2]+1);
|
||||
|
||||
shape1_x.SetSize(orders[0]+2);
|
||||
shape1_y.SetSize(orders[1]+2);
|
||||
shape1_z.SetSize(orders[2]+2);
|
||||
|
||||
dshape1_x.SetSize(orders[0]+2);
|
||||
dshape1_y.SetSize(orders[1]+2);
|
||||
dshape1_z.SetSize(orders[2]+2);
|
||||
|
||||
d2shape1_x.SetSize(orders[0]+2);
|
||||
d2shape1_y.SetSize(orders[1]+2);
|
||||
d2shape1_z.SetSize(orders[2]+2);
|
||||
|
||||
order = max(orders[0]+1, max( orders[1]+1, orders[2]+1));
|
||||
dof = (orders[0] + 2)*(orders[1] + 1)*(orders[2] + 1) +
|
||||
(orders[0] + 1)*(orders[1] + 2)*(orders[2] + 1) +
|
||||
(orders[0] + 1)*(orders[1] + 1)*(orders[2] + 2);
|
||||
u.SetSize(dof);
|
||||
du.SetSize(dof);
|
||||
weights.SetSize(dof);
|
||||
}
|
||||
|
||||
void NURBS_HDiv3DFiniteElement::CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
kv[0]->CalcShape(shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape(shape_y, ijk[1], ip.y);
|
||||
kv[2]->CalcShape(shape_z, ijk[2], ip.z);
|
||||
|
||||
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
|
||||
kv1[2]->CalcShape(shape1_z, ijk[2], ip.z);
|
||||
|
||||
shape = 0.0;
|
||||
int o = 0;
|
||||
for (int k = 0; k <= orders[2]; k++)
|
||||
{
|
||||
const real_t sz = shape_z(k);
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy_sz = shape_y(j)*sz;
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
shape(o,0) = shape1_x(i)*sy_sz;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]; k++)
|
||||
{
|
||||
const real_t sz = shape_z(k);
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1_sz = shape1_y(j)*sz;
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
shape(o,1) = shape_x(i)*sy1_sz;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]+1; k++)
|
||||
{
|
||||
const real_t sz1 = shape1_z(k);
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy_sz1 = shape_y(j)*sz1;
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
shape(o,2) = shape_x(i)*sy_sz1;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void NURBS_HDiv3DFiniteElement::CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
CalcVShape(Trans.GetIntPoint(), shape);
|
||||
const DenseMatrix & J = Trans.Jacobian();
|
||||
MFEM_ASSERT(J.Width() == 3 && J.Height() == 3,
|
||||
"RT_R2D_FiniteElement cannot be embedded in "
|
||||
"3 dimensional spaces");
|
||||
for (int i=0; i<dof; i++)
|
||||
{
|
||||
real_t sx = shape(i, 0);
|
||||
real_t sy = shape(i, 1);
|
||||
real_t sz = shape(i, 2);
|
||||
shape(i, 0) = sx * J(0, 0) + sy * J(0, 1) + sz * J(0, 2);
|
||||
shape(i, 1) = sx * J(1, 0) + sy * J(1, 1) + sz * J(1, 2);
|
||||
shape(i, 2) = sx * J(2, 0) + sy * J(2, 1) + sz * J(2, 2);
|
||||
}
|
||||
shape *= (1.0 / Trans.Weight());
|
||||
}
|
||||
|
||||
void NURBS_HDiv3DFiniteElement::CalcDivShape(const IntegrationPoint &ip,
|
||||
Vector &divshape) const
|
||||
{
|
||||
kv[0]->CalcShape ( shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape ( shape_y, ijk[1], ip.y);
|
||||
kv[2]->CalcShape ( shape_z, ijk[2], ip.z);
|
||||
|
||||
kv1[0]->CalcDShape(dshape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcDShape(dshape1_y, ijk[1], ip.y);
|
||||
kv1[2]->CalcDShape(dshape1_z, ijk[2], ip.z);
|
||||
|
||||
int o = 0;
|
||||
for (int k = 0; k <= orders[2]; k++)
|
||||
{
|
||||
const real_t sz = shape_z(k);
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy_sz = shape_y(j)*sz;
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
divshape(o) = dshape1_x(i)*sy_sz;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]; k++)
|
||||
{
|
||||
const real_t sz = shape_z(k);
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t dy1_sz = dshape1_y(j)*sz;
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
divshape(o) = shape_x(i)*dy1_sz;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]+1; k++)
|
||||
{
|
||||
const real_t dz1 = dshape1_z(k);
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy_dz1 = shape_y(j)*dz1;
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
divshape(o) = shape_x(i)*sy_dz1;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
NURBS_HDiv3DFiniteElement::~NURBS_HDiv3DFiniteElement()
|
||||
{
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
if (kv1[2]) { delete kv1[2]; }
|
||||
}
|
||||
|
||||
void NURBS_HCurl2DFiniteElement::SetOrder() const
|
||||
{
|
||||
orders[0] = kv[0]->GetOrder();
|
||||
orders[1] = kv[1]->GetOrder();
|
||||
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
|
||||
kv1[0] = kv[0]->DegreeElevate(1);
|
||||
kv1[1] = kv[1]->DegreeElevate(1);
|
||||
|
||||
shape_x.SetSize(orders[0]+1);
|
||||
shape_y.SetSize(orders[1]+1);
|
||||
|
||||
dshape_x.SetSize(orders[0]+1);
|
||||
dshape_y.SetSize(orders[1]+1);
|
||||
|
||||
d2shape_x.SetSize(orders[0]+1);
|
||||
d2shape_y.SetSize(orders[1]+1);
|
||||
|
||||
shape1_x.SetSize(orders[0]+2);
|
||||
shape1_y.SetSize(orders[1]+2);
|
||||
|
||||
dshape1_x.SetSize(orders[0]+2);
|
||||
dshape1_y.SetSize(orders[1]+2);
|
||||
|
||||
d2shape1_x.SetSize(orders[0]+2);
|
||||
d2shape1_y.SetSize(orders[1]+2);
|
||||
|
||||
order = max(orders[0]+1, orders[1]+1);
|
||||
dof = (orders[0] + 1)*(orders[1] + 2)
|
||||
+ (orders[1] + 2)*(orders[1] + 1);
|
||||
u.SetSize(dof);
|
||||
du.SetSize(dof);
|
||||
weights.SetSize(dof);
|
||||
}
|
||||
|
||||
void NURBS_HCurl2DFiniteElement::CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
kv[0]->CalcShape(shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape(shape_y, ijk[1], ip.y);
|
||||
|
||||
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
|
||||
|
||||
int o = 0;
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1 = shape1_y(j);
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
shape(o,0) = shape_x(i)*sy1;
|
||||
shape(o,1) = 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy = shape_y(j);
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
shape(o,0) = 0.0;
|
||||
shape(o,1) = shape1_x(i)*sy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void NURBS_HCurl2DFiniteElement::CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
CalcVShape(Trans.GetIntPoint(), shape);
|
||||
const DenseMatrix & JI = Trans.InverseJacobian();
|
||||
MFEM_ASSERT(JI.Width() == 2 && JI.Height() == 2,
|
||||
"NURBS_HCurl2DFiniteElement cannot be embedded in "
|
||||
"3 dimensional spaces");
|
||||
for (int i=0; i<dof; i++)
|
||||
{
|
||||
real_t sx = shape(i, 0);
|
||||
real_t sy = shape(i, 1);
|
||||
shape(i, 0) = sx * JI(0, 0) + sy * JI(1, 0);
|
||||
shape(i, 1) = sx * JI(0, 1) + sy * JI(1, 1);
|
||||
}
|
||||
}
|
||||
|
||||
void NURBS_HCurl2DFiniteElement::CalcCurlShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &curl_shape) const
|
||||
{
|
||||
kv[0]->CalcShape ( shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape ( shape_y, ijk[1], ip.y);
|
||||
|
||||
kv1[0]->CalcDShape(dshape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcDShape(dshape1_y, ijk[1], ip.y);
|
||||
|
||||
int o = 0;
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t dsy1 = dshape1_y(j);
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
curl_shape(o,0) = -shape_x(i)*dsy1;
|
||||
}
|
||||
}
|
||||
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy = shape_y(j);
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
curl_shape(o,0) = dshape1_x(i)*sy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
NURBS_HCurl2DFiniteElement::~NURBS_HCurl2DFiniteElement()
|
||||
{
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
}
|
||||
|
||||
|
||||
void NURBS_HCurl3DFiniteElement::SetOrder() const
|
||||
{
|
||||
orders[0] = kv[0]->GetOrder();
|
||||
orders[1] = kv[1]->GetOrder();
|
||||
orders[2] = kv[2]->GetOrder();
|
||||
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
if (kv1[2]) { delete kv1[2]; }
|
||||
|
||||
kv1[0] = kv[0]->DegreeElevate(1);
|
||||
kv1[1] = kv[1]->DegreeElevate(1);
|
||||
kv1[2] = kv[2]->DegreeElevate(1);
|
||||
|
||||
shape_x.SetSize(orders[0]+1);
|
||||
shape_y.SetSize(orders[1]+1);
|
||||
shape_z.SetSize(orders[2]+1);
|
||||
|
||||
dshape_x.SetSize(orders[0]+1);
|
||||
dshape_y.SetSize(orders[1]+1);
|
||||
dshape_z.SetSize(orders[2]+1);
|
||||
|
||||
d2shape_x.SetSize(orders[0]+1);
|
||||
d2shape_y.SetSize(orders[1]+1);
|
||||
d2shape_z.SetSize(orders[2]+1);
|
||||
|
||||
shape1_x.SetSize(orders[0]+2);
|
||||
shape1_y.SetSize(orders[1]+2);
|
||||
shape1_z.SetSize(orders[2]+2);
|
||||
|
||||
dshape1_x.SetSize(orders[0]+2);
|
||||
dshape1_y.SetSize(orders[1]+2);
|
||||
dshape1_z.SetSize(orders[2]+2);
|
||||
|
||||
d2shape1_x.SetSize(orders[0]+2);
|
||||
d2shape1_y.SetSize(orders[1]+2);
|
||||
d2shape1_z.SetSize(orders[2]+2);
|
||||
|
||||
order = max(orders[0]+1, max( orders[1]+1, orders[2]+1));
|
||||
dof = (orders[0] + 1)*(orders[1] + 2)*(orders[2] + 2) +
|
||||
(orders[0] + 2)*(orders[1] + 1)*(orders[2] + 2) +
|
||||
(orders[0] + 2)*(orders[1] + 2)*(orders[2] + 1);
|
||||
u.SetSize(dof);
|
||||
du.SetSize(dof);
|
||||
weights.SetSize(dof);
|
||||
}
|
||||
|
||||
void NURBS_HCurl3DFiniteElement::CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
kv[0]->CalcShape(shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape(shape_y, ijk[1], ip.y);
|
||||
kv[2]->CalcShape(shape_z, ijk[2], ip.z);
|
||||
|
||||
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
|
||||
kv1[2]->CalcShape(shape1_z, ijk[2], ip.z);
|
||||
|
||||
shape = 0.0;
|
||||
int o = 0;
|
||||
for (int k = 0; k <= orders[2]+1; k++)
|
||||
{
|
||||
const real_t sz1 = shape1_z(k);
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1_sz1 = shape1_y(j)*sz1;
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
shape(o,0) = shape_x(i)*sy1_sz1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]+1; k++)
|
||||
{
|
||||
const real_t sz1 = shape1_z(k);
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy_sz1 = shape_y(j)*sz1;
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
shape(o,1) = shape1_x(i)*sy_sz1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]; k++)
|
||||
{
|
||||
const real_t sz = shape_z(k);
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1_sz = shape1_y(j)*sz;
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
shape(o,2) = shape1_x(i)*sy1_sz;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void NURBS_HCurl3DFiniteElement::CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const
|
||||
{
|
||||
CalcVShape(Trans.GetIntPoint(), shape);
|
||||
const DenseMatrix & JI = Trans.InverseJacobian();
|
||||
MFEM_ASSERT(JI.Width() == 3 && JI.Height() == 3,
|
||||
"NURBS_HCurl3DFiniteElement must be in a"
|
||||
"3 dimensional spaces");
|
||||
for (int i=0; i<dof; i++)
|
||||
{
|
||||
real_t sx = shape(i, 0);
|
||||
real_t sy = shape(i, 1);
|
||||
real_t sz = shape(i, 2);
|
||||
shape(i, 0) = sx * JI(0, 0) + sy * JI(1, 0) + sz * JI(2, 0);
|
||||
shape(i, 1) = sx * JI(0, 1) + sy * JI(1, 1) + sz * JI(2, 1);
|
||||
shape(i, 2) = sx * JI(0, 2) + sy * JI(1, 2) + sz * JI(2, 2);
|
||||
}
|
||||
}
|
||||
|
||||
void NURBS_HCurl3DFiniteElement::CalcCurlShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &curl_shape) const
|
||||
{
|
||||
kv[0]->CalcShape ( shape_x, ijk[0], ip.x);
|
||||
kv[1]->CalcShape ( shape_y, ijk[1], ip.y);
|
||||
kv[2]->CalcShape ( shape_z, ijk[2], ip.z);
|
||||
|
||||
kv1[0]->CalcShape(shape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcShape(shape1_y, ijk[1], ip.y);
|
||||
kv1[2]->CalcShape(shape1_z, ijk[2], ip.z);
|
||||
|
||||
kv1[0]->CalcDShape(dshape1_x, ijk[0], ip.x);
|
||||
kv1[1]->CalcDShape(dshape1_y, ijk[1], ip.y);
|
||||
kv1[2]->CalcDShape(dshape1_z, ijk[2], ip.z);
|
||||
|
||||
int o = 0;
|
||||
for (int k = 0; k <= orders[2]+1; k++)
|
||||
{
|
||||
const real_t sz1 = shape1_z(k), dsz1 = dshape1_z(k);
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1_dsz1 = shape1_y(j)*dsz1,
|
||||
dsy1_sz1 = dshape1_y(j)*sz1;
|
||||
for (int i = 0; i <= orders[0]; i++, o++)
|
||||
{
|
||||
curl_shape(o,0) = 0.0;
|
||||
curl_shape(o,1) = shape_x(i)*sy1_dsz1;
|
||||
curl_shape(o,2) = -shape_x(i)*dsy1_sz1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]+1; k++)
|
||||
{
|
||||
const real_t sz1 = shape1_z(k), dsz1 = dshape1_z(k);
|
||||
for (int j = 0; j <= orders[1]; j++)
|
||||
{
|
||||
const real_t sy_dsz1 = shape_y(j)*dsz1,
|
||||
sy_sz1 = shape_y(j)*sz1;
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
curl_shape(o,0) = -shape1_x(i)*sy_dsz1;
|
||||
curl_shape(o,1) = 0.0;
|
||||
curl_shape(o,2) = dshape1_x(i)*sy_sz1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int k = 0; k <= orders[2]; k++)
|
||||
{
|
||||
const real_t sz = shape_z(k);
|
||||
for (int j = 0; j <= orders[1]+1; j++)
|
||||
{
|
||||
const real_t sy1_sz = shape1_y(j)*sz,
|
||||
dsy1_sz = dshape1_y(j)*sz;
|
||||
for (int i = 0; i <= orders[0]+1; i++, o++)
|
||||
{
|
||||
curl_shape(o,0) = shape1_x(i)*dsy1_sz;
|
||||
curl_shape(o,1) = -dshape1_x(i)*sy1_sz;
|
||||
curl_shape(o,2) = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
NURBS_HCurl3DFiniteElement::~NURBS_HCurl3DFiniteElement()
|
||||
{
|
||||
if (kv1[0]) { delete kv1[0]; }
|
||||
if (kv1[1]) { delete kv1[1]; }
|
||||
if (kv1[2]) { delete kv1[2]; }
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+380
-23
@@ -20,7 +20,7 @@ namespace mfem
|
||||
class KnotVector;
|
||||
|
||||
/// An arbitrary order and dimension NURBS element
|
||||
class NURBSFiniteElement : public ScalarFiniteElement
|
||||
class NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Array <const KnotVector*> kv;
|
||||
@@ -30,31 +30,34 @@ protected:
|
||||
|
||||
public:
|
||||
/** @brief Construct NURBSFiniteElement with given
|
||||
@param D Reference space dimension
|
||||
@param G Geometry type (of type Geometry::Type)
|
||||
@param Do Number of degrees of freedom in the FiniteElement
|
||||
@param O Order/degree of the FiniteElement
|
||||
@param F FunctionSpace type of the FiniteElement
|
||||
@param dim Reference space dimension
|
||||
*/
|
||||
NURBSFiniteElement(int D, Geometry::Type G, int Do, int O, int F)
|
||||
: ScalarFiniteElement(D, G, Do, O, F)
|
||||
NURBSFiniteElement(int dim)
|
||||
{
|
||||
ijk = NULL;
|
||||
patch = elem = -1;
|
||||
kv.SetSize(dim);
|
||||
weights.SetSize(dof);
|
||||
weights = 1.0;
|
||||
}
|
||||
|
||||
/// Resets the patch and element data stored in the element
|
||||
void Reset () const { patch = elem = -1; }
|
||||
/// Set which IJK in patch should be evaluated
|
||||
void SetIJK (const int *IJK) const { ijk = IJK; }
|
||||
/// Get which patch is currently considered
|
||||
int GetPatch () const { return patch; }
|
||||
/// Set which patch should be evaluated
|
||||
void SetPatch (int p) const { patch = p; }
|
||||
/// Set which elemenet should be evaluated
|
||||
int GetElement () const { return elem; }
|
||||
/// Get which element is currently considered
|
||||
void SetElement (int e) const { elem = e; }
|
||||
/// Get the KnotVectors
|
||||
Array <const KnotVector*> &KnotVectors() const { return kv; }
|
||||
/// Get the Weights
|
||||
Vector &Weights () const { return weights; }
|
||||
/// Update the NURBSFiniteElement according to the currently set knot vectors
|
||||
/// Update the polynomial order according to the currently set knotvectors
|
||||
/// Resizes all internal data members to have the correct size
|
||||
/// related to the polynomial order
|
||||
virtual void SetOrder () const { }
|
||||
|
||||
/// Returns the indices (i,j) in 2D or (i,j,k) in 3D of this element in the
|
||||
@@ -64,7 +67,8 @@ public:
|
||||
|
||||
|
||||
/// An arbitrary order 1D NURBS element on a segment
|
||||
class NURBS1DFiniteElement : public NURBSFiniteElement
|
||||
class NURBS1DFiniteElement : public ScalarFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector shape_x;
|
||||
@@ -72,7 +76,8 @@ protected:
|
||||
public:
|
||||
/// Construct the NURBS1DFiniteElement of order @a p
|
||||
NURBS1DFiniteElement(int p)
|
||||
: NURBSFiniteElement(1, Geometry::SEGMENT, p + 1, p, FunctionSpace::Qk),
|
||||
: ScalarFiniteElement(1, Geometry::SEGMENT, p + 1, p, FunctionSpace::Qk),
|
||||
NURBSFiniteElement(1),
|
||||
shape_x(p + 1) { }
|
||||
|
||||
virtual void SetOrder() const;
|
||||
@@ -84,7 +89,8 @@ public:
|
||||
};
|
||||
|
||||
/// An arbitrary order 2D NURBS element on a square
|
||||
class NURBS2DFiniteElement : public NURBSFiniteElement
|
||||
class NURBS2DFiniteElement : public ScalarFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector u, shape_x, shape_y, dshape_x, dshape_y, d2shape_x, d2shape_y;
|
||||
@@ -93,16 +99,18 @@ protected:
|
||||
public:
|
||||
/// Construct the NURBS2DFiniteElement of order @a p
|
||||
NURBS2DFiniteElement(int p)
|
||||
: NURBSFiniteElement(2, Geometry::SQUARE, (p + 1)*(p + 1), p,
|
||||
FunctionSpace::Qk),
|
||||
: ScalarFiniteElement(2, Geometry::SQUARE, (p + 1)*(p + 1), p,
|
||||
FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
u(dof), shape_x(p + 1), shape_y(p + 1), dshape_x(p + 1),
|
||||
dshape_y(p + 1), d2shape_x(p + 1), d2shape_y(p + 1), du(dof,2)
|
||||
{ orders[0] = orders[1] = p; }
|
||||
|
||||
/// Construct the NURBS2DFiniteElement with x-order @a px and y-order @a py
|
||||
NURBS2DFiniteElement(int px, int py)
|
||||
: NURBSFiniteElement(2, Geometry::SQUARE, (px + 1)*(py + 1),
|
||||
std::max(px, py), FunctionSpace::Qk),
|
||||
: ScalarFiniteElement(2, Geometry::SQUARE, (px + 1)*(py + 1),
|
||||
std::max(px, py), FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
u(dof), shape_x(px + 1), shape_y(py + 1), dshape_x(px + 1),
|
||||
dshape_y(py + 1), d2shape_x(px + 1), d2shape_y(py + 1), du(dof,2)
|
||||
{ orders[0] = px; orders[1] = py; }
|
||||
@@ -116,7 +124,8 @@ public:
|
||||
};
|
||||
|
||||
/// An arbitrary order 3D NURBS element on a cube
|
||||
class NURBS3DFiniteElement : public NURBSFiniteElement
|
||||
class NURBS3DFiniteElement : public ScalarFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector u, shape_x, shape_y, shape_z;
|
||||
@@ -127,8 +136,9 @@ protected:
|
||||
public:
|
||||
/// Construct the NURBS3DFiniteElement of order @a p
|
||||
NURBS3DFiniteElement(int p)
|
||||
: NURBSFiniteElement(3, Geometry::CUBE, (p + 1)*(p + 1)*(p + 1), p,
|
||||
FunctionSpace::Qk),
|
||||
: ScalarFiniteElement(3, Geometry::CUBE, (p + 1)*(p + 1)*(p + 1), p,
|
||||
FunctionSpace::Qk),
|
||||
NURBSFiniteElement(3),
|
||||
u(dof), shape_x(p + 1), shape_y(p + 1), shape_z(p + 1),
|
||||
dshape_x(p + 1), dshape_y(p + 1), dshape_z(p + 1),
|
||||
d2shape_x(p + 1), d2shape_y(p + 1), d2shape_z(p + 1), du(dof,3)
|
||||
@@ -137,8 +147,9 @@ public:
|
||||
/// Construct the NURBS3DFiniteElement with x-order @a px and y-order @a py
|
||||
/// and z-order @a pz
|
||||
NURBS3DFiniteElement(int px, int py, int pz)
|
||||
: NURBSFiniteElement(3, Geometry::CUBE, (px + 1)*(py + 1)*(pz + 1),
|
||||
std::max(std::max(px,py),pz), FunctionSpace::Qk),
|
||||
: ScalarFiniteElement(3, Geometry::CUBE, (px + 1)*(py + 1)*(pz + 1),
|
||||
std::max(std::max(px,py),pz), FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
u(dof), shape_x(px + 1), shape_y(py + 1), shape_z(pz + 1),
|
||||
dshape_x(px + 1), dshape_y(py + 1), dshape_z(pz + 1),
|
||||
d2shape_x(px + 1), d2shape_y(py + 1), d2shape_z(pz + 1), du(dof,3)
|
||||
@@ -152,6 +163,352 @@ public:
|
||||
DenseMatrix &hessian) const;
|
||||
};
|
||||
|
||||
|
||||
/** An arbitrary order H(div)-conforming 2D NURBS element on a square.
|
||||
More details in the following papers:
|
||||
|
||||
[1] Annalisa Buffa, Carlo De Falco, Giancarlo Sangalli
|
||||
"Isogeometric analysis: stable elements for the 2D Stokes equation."
|
||||
International Journal for Numerical Methods in Fluids 65 (11‐12) 1407-1422
|
||||
|
||||
[2] John A Evans, Thomas JR Hughes
|
||||
"Isogeometric divergence-conforming B-splines for the unsteady Navier–Stokes equations."
|
||||
Journal of Computational Physics (241) 141-167
|
||||
*/
|
||||
class NURBS_HDiv2DFiniteElement : public VectorFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector shape_x, shape_y, dshape_x, dshape_y, d2shape_x, d2shape_y;
|
||||
mutable Vector shape1_x, shape1_y, dshape1_x, dshape1_y, d2shape1_x, d2shape1_y;
|
||||
mutable Vector u;
|
||||
mutable DenseMatrix du;
|
||||
mutable Array <const KnotVector*> kv1;
|
||||
|
||||
public:
|
||||
/// Construct the NURBS_HDiv2DFiniteElement of order @a p
|
||||
NURBS_HDiv2DFiniteElement(int p)
|
||||
: VectorFiniteElement(2, Geometry::SQUARE, 2*(p + 1)*(p + 2), p,
|
||||
H_DIV,FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
shape_x(p + 1), shape_y(p + 1), dshape_x(p + 1),
|
||||
dshape_y(p + 1), d2shape_x(p + 1), d2shape_y(p + 1),
|
||||
shape1_x(p + 2), shape1_y(p + 2), dshape1_x(p + 2),
|
||||
dshape1_y(p + 2), d2shape1_x(p + 2), d2shape1_y(p + 2),
|
||||
u(dof), du(dof,2)
|
||||
{
|
||||
orders[0] = orders[1] = p;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
}
|
||||
|
||||
/// Construct the NURBS_HDiv2DFiniteElement with x-order @a px and y-order @a py
|
||||
NURBS_HDiv2DFiniteElement(int px, int py)
|
||||
: VectorFiniteElement(2, Geometry::SQUARE,
|
||||
(px + 2)*(py + 1)+(px + 1)*(py + 2),
|
||||
std::max(px, py), H_DIV, FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
shape_x(px + 1), shape_y(py + 1), dshape_x(px + 1),
|
||||
dshape_y(py + 1), d2shape_x(px + 1), d2shape_y(py + 1),
|
||||
shape1_x(px + 2), shape1_y(py + 2), dshape1_x(px + 2),
|
||||
dshape1_y(py + 2), d2shape1_x(px + 2), d2shape1_y(py + 2),
|
||||
u(dof), du(dof,2)
|
||||
{
|
||||
orders[0] = px; orders[1] = py;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
}
|
||||
|
||||
virtual void SetOrder() const;
|
||||
|
||||
virtual void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the values of all shape functions of a *vector* finite
|
||||
element in physical space at the point described by @a Trans. */
|
||||
/** Each row of the result DenseMatrix @a shape contains the components of
|
||||
one vector shape function. The size (#dof x SDim) of @a shape must be set
|
||||
in advance, where SDim >= #dim is the physical space dimension as
|
||||
described by @a Trans. */
|
||||
virtual void CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the divergence of all shape functions of a *vector*
|
||||
finite element in reference space at the given point @a ip. */
|
||||
/** The size (#dof) of the result Vector @a divshape must be set in advance.
|
||||
*/
|
||||
virtual void CalcDivShape(const IntegrationPoint &ip,
|
||||
Vector &divshape) const;
|
||||
|
||||
~NURBS_HDiv2DFiniteElement();
|
||||
};
|
||||
|
||||
|
||||
/** An arbitrary order H(div)-conforming 3D NURBS element on a cube
|
||||
More details in the following papers:
|
||||
|
||||
[1] Annalisa Buffa, Carlo De Falco, Giancarlo Sangalli
|
||||
"Isogeometric analysis: stable elements for the 2D Stokes equation."
|
||||
International Journal for Numerical Methods in Fluids 65 (11‐12) 1407-1422
|
||||
|
||||
[2] John A Evans, Thomas JR Hughes
|
||||
"Isogeometric divergence-conforming B-splines for the unsteady
|
||||
Navier–Stokes equations."
|
||||
Journal of Computational Physics (241) 141-167 */
|
||||
class NURBS_HDiv3DFiniteElement : public VectorFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector shape_x, shape_y, shape_z;
|
||||
mutable Vector dshape_x, dshape_y, dshape_z;
|
||||
mutable Vector d2shape_x, d2shape_y, d2shape_z;
|
||||
mutable Vector shape1_x, shape1_y, shape1_z;
|
||||
mutable Vector dshape1_x, dshape1_y, dshape1_z;
|
||||
mutable Vector d2shape1_x, d2shape1_y, d2shape1_z;
|
||||
mutable Vector u;
|
||||
mutable DenseMatrix du;
|
||||
mutable Array <const KnotVector*> kv1;
|
||||
|
||||
public:
|
||||
/// Construct the NURBS_HDiv3DFiniteElement of order @a p
|
||||
NURBS_HDiv3DFiniteElement(int p)
|
||||
: VectorFiniteElement(3, Geometry::CUBE, 3*(p + 1)*(p + 1)*(p + 2),
|
||||
p, H_DIV,FunctionSpace::Qk),
|
||||
NURBSFiniteElement(3),
|
||||
shape_x(p + 1), shape_y(p + 1), shape_z(p + 1),
|
||||
dshape_x(p + 1), dshape_y(p + 1), dshape_z(p + 1),
|
||||
d2shape_x(p + 1), d2shape_y(p + 1), d2shape_z(p + 1),
|
||||
shape1_x(p + 2), shape1_y(p + 2), shape1_z(p + 2),
|
||||
dshape1_x(p + 2), dshape1_y(p + 2),dshape1_z(p + 2),
|
||||
d2shape1_x(p + 2), d2shape1_y(p + 2), d2shape1_z(p + 2),
|
||||
u(dof), du(dof,3)
|
||||
{
|
||||
orders[0] = orders[1] = orders[2] = p;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
kv1[2] = nullptr;
|
||||
}
|
||||
|
||||
/// Construct the NURBS_HDiv3DFiniteElement with x-order @a px, y-order @a py and z-order @a pz
|
||||
NURBS_HDiv3DFiniteElement(int px, int py, int pz)
|
||||
: VectorFiniteElement(3, Geometry::CUBE,
|
||||
(px + 2)*(py + 1)*(pz + 1) +
|
||||
(px + 1)*(py + 2)*(pz + 1) +
|
||||
(px + 1)*(py + 1)*(pz + 2),
|
||||
std::max(px, py), H_DIV, FunctionSpace::Qk),
|
||||
NURBSFiniteElement(3),
|
||||
shape_x(px + 1), shape_y(py + 1), shape_z(pz + 1),
|
||||
dshape_x(px + 1), dshape_y(py + 1), dshape_z(pz + 1),
|
||||
d2shape_x(px + 1), d2shape_y(py + 1), d2shape_z(pz + 1),
|
||||
shape1_x(px + 2), shape1_y(py + 2), shape1_z(pz + 2),
|
||||
dshape1_x(px + 2), dshape1_y(py + 2),dshape1_z(pz + 2),
|
||||
d2shape1_x(px + 2), d2shape1_y(py + 2), d2shape1_z(pz + 2),
|
||||
u(dof), du(dof,3)
|
||||
{
|
||||
orders[0] = px; orders[1] = py; orders[2] = pz;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
kv1[2] = nullptr;
|
||||
}
|
||||
|
||||
virtual void SetOrder() const;
|
||||
|
||||
virtual void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the values of all shape functions of a *vector* finite
|
||||
element in physical space at the point described by @a Trans. */
|
||||
/** Each row of the result DenseMatrix @a shape contains the components of
|
||||
one vector shape function. The size (#dof x SDim) of @a shape must be set
|
||||
in advance, where SDim >= #dim is the physical space dimension as
|
||||
described by @a Trans. */
|
||||
virtual void CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the divergence of all shape functions of a *vector*
|
||||
finite element in reference space at the given point @a ip. */
|
||||
/** The size (#dof) of the result Vector @a divshape must be set in advance.
|
||||
*/
|
||||
virtual void CalcDivShape(const IntegrationPoint &ip,
|
||||
Vector &divshape) const;
|
||||
|
||||
~NURBS_HDiv3DFiniteElement();
|
||||
};
|
||||
|
||||
|
||||
/** An arbitrary order H(curl)-conforming 2D NURBS element on a square
|
||||
More details in the following paper:
|
||||
|
||||
[1] Annalisa Buffa, Giancarlo Sangalli, Rafael Vázquez
|
||||
"Isogeometric analysis in electromagnetics: B-splines approximation."
|
||||
Computer Methods in Applied Mechanics and Engineering (199) 1143-1152 */
|
||||
class NURBS_HCurl2DFiniteElement : public VectorFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector shape_x, shape_y, dshape_x, dshape_y, d2shape_x, d2shape_y;
|
||||
mutable Vector shape1_x, shape1_y, dshape1_x, dshape1_y, d2shape1_x, d2shape1_y;
|
||||
mutable Vector u;
|
||||
mutable DenseMatrix du;
|
||||
mutable Array <const KnotVector*> kv1;
|
||||
|
||||
public:
|
||||
/// Construct the NURBS_HCurl2DFiniteElement of order @a p
|
||||
NURBS_HCurl2DFiniteElement(int p)
|
||||
: VectorFiniteElement(2, Geometry::SQUARE, 2*(p + 1)*(p + 2), p,
|
||||
H_CURL,FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
shape_x(p + 1), shape_y(p + 1), dshape_x(p + 1),
|
||||
dshape_y(p + 1), d2shape_x(p + 1), d2shape_y(p + 1),
|
||||
shape1_x(p + 2), shape1_y(p + 2), dshape1_x(p + 2),
|
||||
dshape1_y(p + 2), d2shape1_x(p + 2), d2shape1_y(p + 2),
|
||||
u(dof), du(dof,2)
|
||||
{
|
||||
orders[0] = orders[1] = p;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
}
|
||||
|
||||
/// Construct the NURBS_HCurl2DFiniteElement with x-order @a px and y-order @a py
|
||||
NURBS_HCurl2DFiniteElement(int px, int py)
|
||||
: VectorFiniteElement(2, Geometry::SQUARE,
|
||||
(px + 1)*(py + 2)+(px + 2)*(py + 1),
|
||||
std::max(px, py), H_CURL, FunctionSpace::Qk),
|
||||
NURBSFiniteElement(2),
|
||||
shape_x(px + 1), shape_y(py + 1), dshape_x(px + 1),
|
||||
dshape_y(py + 1), d2shape_x(px + 1), d2shape_y(py + 1),
|
||||
shape1_x(px + 2), shape1_y(py + 2), dshape1_x(px + 2),
|
||||
dshape1_y(py + 2), d2shape1_x(px + 2), d2shape1_y(py + 2),
|
||||
u(dof), du(dof,2)
|
||||
{
|
||||
orders[0] = px; orders[1] = py;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
}
|
||||
|
||||
virtual void SetOrder() const;
|
||||
|
||||
virtual void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the values of all shape functions of a *vector* finite
|
||||
element in physical space at the point described by @a Trans. */
|
||||
/** Each row of the result DenseMatrix @a shape contains the components of
|
||||
one vector shape function. The size (#dof x SDim) of @a shape must be set
|
||||
in advance, where SDim >= #dim is the physical space dimension as
|
||||
described by @a Trans. */
|
||||
virtual void CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the curl of all shape functions of a *vector* finite
|
||||
element in reference space at the given point @a ip. */
|
||||
/** Each row of the result DenseMatrix @a curl_shape contains the components
|
||||
of the curl of one vector shape function. The size (#dof x CDim) of
|
||||
@a curl_shape must be set in advance, where CDim = 3 for #dim = 3 and
|
||||
CDim = 1 for #dim = 2. */
|
||||
virtual void CalcCurlShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &curl_shape) const;
|
||||
|
||||
~NURBS_HCurl2DFiniteElement();
|
||||
};
|
||||
|
||||
|
||||
/** An arbitrary order H(curl)-conforming 3D NURBS element on a cube
|
||||
More details in the following paper:
|
||||
|
||||
[1] Annalisa Buffa, Giancarlo Sangalli, Rafael Vázquez
|
||||
"Isogeometric analysis in electromagnetics: B-splines approximation."
|
||||
Computer Methods in Applied Mechanics and Engineering (199) 1143-1152 */
|
||||
class NURBS_HCurl3DFiniteElement : public VectorFiniteElement,
|
||||
public NURBSFiniteElement
|
||||
{
|
||||
protected:
|
||||
mutable Vector shape_x, shape_y, shape_z;
|
||||
mutable Vector dshape_x, dshape_y, dshape_z;
|
||||
mutable Vector d2shape_x, d2shape_y, d2shape_z;
|
||||
mutable Vector shape1_x, shape1_y, shape1_z;
|
||||
mutable Vector dshape1_x, dshape1_y, dshape1_z;
|
||||
mutable Vector d2shape1_x, d2shape1_y, d2shape1_z;
|
||||
mutable Vector u;
|
||||
mutable DenseMatrix du;
|
||||
mutable Array <const KnotVector*> kv1;
|
||||
|
||||
public:
|
||||
/// Construct the NURBS_HCurl3DFiniteElement of order @a p
|
||||
NURBS_HCurl3DFiniteElement(int p)
|
||||
: VectorFiniteElement(3, Geometry::CUBE, 3*(p + 1)*(p + 2)*(p + 2), p,
|
||||
H_CURL,FunctionSpace::Qk),
|
||||
NURBSFiniteElement(3),
|
||||
shape_x(p + 1), shape_y(p + 1), shape_z(p + 1),
|
||||
dshape_x(p + 1), dshape_y(p + 1), dshape_z(p + 1),
|
||||
d2shape_x(p + 1), d2shape_y(p + 1), d2shape_z(p + 1),
|
||||
shape1_x(p + 2), shape1_y(p + 2), shape1_z(p + 2),
|
||||
dshape1_x(p + 2), dshape1_y(p + 2),dshape1_z(p + 2),
|
||||
d2shape1_x(p + 2), d2shape1_y(p + 2), d2shape1_z(p + 2),
|
||||
u(dof), du(dof,3)
|
||||
{
|
||||
orders[0] = orders[1] = orders[2] = p;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
kv1[2] = nullptr;
|
||||
}
|
||||
|
||||
/// Construct the NURBS_HCurl3DFiniteElement with x-order @a px, y-order @a py and z-order @a pz
|
||||
NURBS_HCurl3DFiniteElement(int px, int py, int pz)
|
||||
: VectorFiniteElement(3, Geometry::CUBE,
|
||||
(px + 1)*(py + 2)*(pz + 2) +
|
||||
(px + 2)*(py + 1)*(pz + 2) +
|
||||
(px + 2)*(py + 2)*(pz + 1),
|
||||
std::max(std::max(px, py), pz), H_CURL, FunctionSpace::Qk),
|
||||
NURBSFiniteElement(3),
|
||||
shape_x(px + 1), shape_y(py + 1), shape_z(pz + 1),
|
||||
dshape_x(px + 1), dshape_y(py + 1), dshape_z(pz + 1),
|
||||
d2shape_x(px + 1), d2shape_y(py + 1), d2shape_z(pz + 1),
|
||||
shape1_x(px + 2), shape1_y(py + 2), shape1_z(pz + 2),
|
||||
dshape1_x(px + 2), dshape1_y(py + 2),dshape1_z(pz + 2),
|
||||
d2shape1_x(px + 2), d2shape1_y(py + 2), d2shape1_z(pz + 2),
|
||||
u(dof), du(dof,3)
|
||||
{
|
||||
orders[0] = px; orders[1] = py; orders[2] = pz;
|
||||
kv1.SetSize(dim);
|
||||
kv1[0] = nullptr;
|
||||
kv1[1] = nullptr;
|
||||
kv1[2] = nullptr;
|
||||
}
|
||||
|
||||
virtual void SetOrder() const;
|
||||
|
||||
virtual void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the values of all shape functions of a *vector* finite
|
||||
element in physical space at the point described by @a Trans. */
|
||||
/** Each row of the result DenseMatrix @a shape contains the components of
|
||||
one vector shape function. The size (#dof x SDim) of @a shape must be set
|
||||
in advance, where SDim >= #dim is the physical space dimension as
|
||||
described by @a Trans. */
|
||||
virtual void CalcVShape(ElementTransformation &Trans,
|
||||
DenseMatrix &shape) const;
|
||||
|
||||
/** @brief Evaluate the curl of all shape functions of a *vector* finite
|
||||
element in reference space at the given point @a ip. */
|
||||
/** Each row of the result DenseMatrix @a curl_shape contains the components
|
||||
of the curl of one vector shape function. The size (#dof x CDim) of
|
||||
@a curl_shape must be set in advance, where CDim = 3 for #dim = 3 and
|
||||
CDim = 1 for #dim = 2. */
|
||||
virtual void CalcCurlShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &curl_shape) const;
|
||||
|
||||
~NURBS_HCurl3DFiniteElement();
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
|
||||
+214
@@ -344,6 +344,32 @@ FiniteElementCollection *FiniteElementCollection::New(const char *name)
|
||||
{
|
||||
fec = new Local_FECollection(name + 6);
|
||||
}
|
||||
else if (!strncmp(name, "NURBS_HDiv", 10))
|
||||
{
|
||||
if (name[10] != '\0')
|
||||
{
|
||||
// "NURBS" + "number" --> fixed order nurbs collection
|
||||
fec = new NURBS_HDivFECollection(atoi(name + 10));
|
||||
}
|
||||
else
|
||||
{
|
||||
// "NURBS" --> variable order nurbs collection
|
||||
fec = new NURBS_HDivFECollection();
|
||||
}
|
||||
}
|
||||
else if (!strncmp(name, "NURBS_HCurl", 11))
|
||||
{
|
||||
if (name[11] != '\0')
|
||||
{
|
||||
// "NURBS" + "number" --> fixed order nurbs collection
|
||||
fec = new NURBS_HCurlFECollection(atoi(name + 11));
|
||||
}
|
||||
else
|
||||
{
|
||||
// "NURBS" --> variable order nurbs collection
|
||||
fec = new NURBS_HCurlFECollection();
|
||||
}
|
||||
}
|
||||
else if (!strncmp(name, "NURBS", 5))
|
||||
{
|
||||
if (name[5] != '\0')
|
||||
@@ -3533,4 +3559,192 @@ FiniteElementCollection *NURBSFECollection::GetTraceCollection() const
|
||||
return NULL;
|
||||
}
|
||||
|
||||
|
||||
NURBS_HDivFECollection::NURBS_HDivFECollection(int Order, const int dim)
|
||||
: NURBSFECollection((Order == VariableOrder) ? 1 : Order)
|
||||
{
|
||||
const int order = (Order == VariableOrder) ? 1 : Order;
|
||||
|
||||
SegmentFE = new NURBS1DFiniteElement(order);
|
||||
QuadrilateralFE = new NURBS2DFiniteElement(order);
|
||||
|
||||
QuadrilateralVFE = new NURBS_HDiv2DFiniteElement(order);
|
||||
ParallelepipedVFE = new NURBS_HDiv3DFiniteElement(order);
|
||||
|
||||
if (dim != -1) { SetDim(dim); }
|
||||
SetOrder(Order);
|
||||
}
|
||||
|
||||
void NURBS_HDivFECollection::SetDim(int dim)
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
sFE = SegmentFE;
|
||||
qFE = QuadrilateralVFE;
|
||||
hFE = nullptr;
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
sFE = nullptr;
|
||||
qFE = QuadrilateralFE;
|
||||
hFE = ParallelepipedVFE;
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem::err<<"Dimension = "<<dim<<endl;
|
||||
mfem_error ("NURBS_HDivFECollection: wrong dimension!");
|
||||
}
|
||||
}
|
||||
|
||||
NURBS_HDivFECollection::~NURBS_HDivFECollection()
|
||||
{
|
||||
delete SegmentFE;
|
||||
delete QuadrilateralFE;
|
||||
delete QuadrilateralVFE;
|
||||
delete ParallelepipedVFE;
|
||||
}
|
||||
|
||||
const FiniteElement *
|
||||
NURBS_HDivFECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
|
||||
{
|
||||
switch (GeomType)
|
||||
{
|
||||
case Geometry::SEGMENT: return sFE;
|
||||
case Geometry::SQUARE: return qFE;
|
||||
case Geometry::CUBE: return hFE;
|
||||
default:
|
||||
if (error_mode == RETURN_NULL) { return nullptr; }
|
||||
mfem_error ("NURBS_HDivFECollection: unknown geometry type.");
|
||||
}
|
||||
return QuadrilateralFE; // Make some compilers happy
|
||||
}
|
||||
|
||||
void NURBS_HDivFECollection::SetOrder(int Order) const
|
||||
{
|
||||
mOrder = Order;
|
||||
if (Order != VariableOrder)
|
||||
{
|
||||
snprintf(name, 16, "NURBS_HDiv%i", Order);
|
||||
}
|
||||
else
|
||||
{
|
||||
snprintf(name, 16, "NURBS_HDiv");
|
||||
}
|
||||
}
|
||||
|
||||
int NURBS_HDivFECollection::DofForGeometry(Geometry::Type GeomType) const
|
||||
{
|
||||
mfem_error("NURBS_HDivFECollection::DofForGeometry");
|
||||
return 0; // Make some compilers happy
|
||||
}
|
||||
|
||||
const int *NURBS_HDivFECollection::DofOrderForOrientation(
|
||||
Geometry::Type GeomType,
|
||||
int Or) const
|
||||
{
|
||||
mfem_error("NURBS_HDivFECollection::DofOrderForOrientation");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
FiniteElementCollection *NURBS_HDivFECollection::GetTraceCollection() const
|
||||
{
|
||||
MFEM_ABORT("NURBS finite elements can not be statically condensed!");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
NURBS_HCurlFECollection::NURBS_HCurlFECollection(int Order, const int dim)
|
||||
: NURBSFECollection((Order == VariableOrder) ? 1 : Order)
|
||||
{
|
||||
const int order = (Order == VariableOrder) ? 1 : Order;
|
||||
|
||||
SegmentFE = new NURBS1DFiniteElement(order+1);
|
||||
QuadrilateralFE = new NURBS2DFiniteElement(order+1);
|
||||
|
||||
QuadrilateralVFE = new NURBS_HCurl2DFiniteElement(order);
|
||||
ParallelepipedVFE = new NURBS_HCurl3DFiniteElement(order);
|
||||
if (dim != -1) { SetDim(dim); }
|
||||
SetOrder(Order);
|
||||
}
|
||||
|
||||
void NURBS_HCurlFECollection::SetDim(int dim)
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
sFE = SegmentFE;
|
||||
qFE = QuadrilateralVFE;
|
||||
hFE = nullptr;
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
sFE = nullptr;
|
||||
qFE = QuadrilateralFE;
|
||||
hFE = ParallelepipedVFE;
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem::err<<"Dimension = "<<dim<<endl;
|
||||
mfem_error ("NURBS_HCurlFECollection: wrong dimension!");
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
NURBS_HCurlFECollection::~NURBS_HCurlFECollection()
|
||||
{
|
||||
delete SegmentFE;
|
||||
delete QuadrilateralFE;
|
||||
delete QuadrilateralVFE;
|
||||
delete ParallelepipedVFE;
|
||||
}
|
||||
|
||||
const FiniteElement *
|
||||
NURBS_HCurlFECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
|
||||
{
|
||||
switch (GeomType)
|
||||
{
|
||||
case Geometry::SEGMENT: return sFE;
|
||||
case Geometry::SQUARE: return qFE;
|
||||
case Geometry::CUBE: return hFE;
|
||||
default:
|
||||
if (error_mode == RETURN_NULL) { return nullptr; }
|
||||
mfem_error ("NURBS_HCurlFECollection: unknown geometry type.");
|
||||
}
|
||||
return QuadrilateralFE; // Make some compilers happy
|
||||
}
|
||||
|
||||
void NURBS_HCurlFECollection::SetOrder(int Order) const
|
||||
{
|
||||
mOrder = Order;
|
||||
if (Order != VariableOrder)
|
||||
{
|
||||
snprintf(name, 16, "NURBS_HCurl%i", Order);
|
||||
}
|
||||
else
|
||||
{
|
||||
snprintf(name, 16, "NURBS_HCurl");
|
||||
}
|
||||
}
|
||||
|
||||
int NURBS_HCurlFECollection::DofForGeometry(Geometry::Type GeomType) const
|
||||
{
|
||||
mfem_error("NURBS_HCurlFECollection::DofForGeometry");
|
||||
return 0; // Make some compilers happy
|
||||
}
|
||||
|
||||
const int *NURBS_HCurlFECollection::DofOrderForOrientation(
|
||||
Geometry::Type GeomType,
|
||||
int Or) const
|
||||
{
|
||||
mfem_error("NURBS_HCurlFECollection::DofOrderForOrientation");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
FiniteElementCollection *NURBS_HCurlFECollection::GetTraceCollection() const
|
||||
{
|
||||
MFEM_ABORT("NURBS finite elements can not be statically condensed!");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
||||
+109
-4
@@ -680,8 +680,8 @@ public:
|
||||
/// Arbitrary order non-uniform rational B-splines (NURBS) finite elements.
|
||||
class NURBSFECollection : public FiniteElementCollection
|
||||
{
|
||||
private:
|
||||
PointFiniteElement *PointFE;
|
||||
protected:
|
||||
PointFiniteElement *PointFE;
|
||||
NURBS1DFiniteElement *SegmentFE;
|
||||
NURBS2DFiniteElement *QuadrilateralFE;
|
||||
NURBS3DFiniteElement *ParallelepipedFE;
|
||||
@@ -701,13 +701,15 @@ public:
|
||||
order, or VariableOrder (default). */
|
||||
explicit NURBSFECollection(int Order = VariableOrder);
|
||||
|
||||
void Reset() const
|
||||
virtual void Reset() const
|
||||
{
|
||||
SegmentFE->Reset();
|
||||
QuadrilateralFE->Reset();
|
||||
ParallelepipedFE->Reset();
|
||||
}
|
||||
|
||||
virtual void SetDim(const int dim) {};
|
||||
|
||||
/** @brief Get the order of the NURBS collection: either a positive number,
|
||||
when using fixed order, or VariableOrder. */
|
||||
/** @note Not to be confused with FiniteElementCollection::GetOrder(). */
|
||||
@@ -715,7 +717,7 @@ public:
|
||||
|
||||
/** @brief Set the order and the name, based on the given @a Order: either a
|
||||
positive number for fixed order, or VariableOrder. */
|
||||
void SetOrder(int Order) const;
|
||||
virtual void SetOrder(int Order) const;
|
||||
|
||||
const FiniteElement *
|
||||
FiniteElementForGeometry(Geometry::Type GeomType) const override;
|
||||
@@ -734,6 +736,109 @@ public:
|
||||
virtual ~NURBSFECollection();
|
||||
};
|
||||
|
||||
/// Arbitrary order H(div) NURBS finite elements.
|
||||
class NURBS_HDivFECollection : public NURBSFECollection
|
||||
{
|
||||
private:
|
||||
|
||||
NURBS1DFiniteElement *SegmentFE;
|
||||
NURBS2DFiniteElement *QuadrilateralFE;
|
||||
|
||||
NURBS_HDiv2DFiniteElement *QuadrilateralVFE;
|
||||
NURBS_HDiv3DFiniteElement *ParallelepipedVFE;
|
||||
|
||||
FiniteElement *sFE;
|
||||
FiniteElement *qFE;
|
||||
FiniteElement *hFE;
|
||||
|
||||
public:
|
||||
|
||||
/** @brief The parameter @a Order must be either a positive number, for fixed
|
||||
order, or VariableOrder (default). */
|
||||
explicit NURBS_HDivFECollection(int Order = VariableOrder, const int vdim = -1);
|
||||
|
||||
virtual void Reset() const override
|
||||
{
|
||||
SegmentFE->Reset();
|
||||
QuadrilateralFE->Reset();
|
||||
QuadrilateralVFE->Reset();
|
||||
ParallelepipedVFE->Reset();
|
||||
}
|
||||
|
||||
virtual void SetDim(const int dim) override;
|
||||
|
||||
/** @brief Set the order and the name, based on the given @a Order: either a
|
||||
positive number for fixed order, or VariableOrder. */
|
||||
virtual void SetOrder(int Order) const override;
|
||||
|
||||
const FiniteElement *
|
||||
FiniteElementForGeometry(Geometry::Type GeomType) const override;
|
||||
|
||||
int DofForGeometry(Geometry::Type GeomType) const override;
|
||||
|
||||
const int *DofOrderForOrientation(Geometry::Type GeomType,
|
||||
int Or) const override;
|
||||
|
||||
const char *Name() const override { return name; }
|
||||
|
||||
int GetContType() const override { return CONTINUOUS; }
|
||||
|
||||
FiniteElementCollection *GetTraceCollection() const override;
|
||||
|
||||
virtual ~NURBS_HDivFECollection();
|
||||
};
|
||||
|
||||
/// Arbitrary order H(curl) NURBS finite elements.
|
||||
class NURBS_HCurlFECollection : public NURBSFECollection
|
||||
{
|
||||
private:
|
||||
NURBS1DFiniteElement *SegmentFE;
|
||||
NURBS2DFiniteElement *QuadrilateralFE;
|
||||
|
||||
NURBS_HCurl2DFiniteElement *QuadrilateralVFE;
|
||||
NURBS_HCurl3DFiniteElement *ParallelepipedVFE;
|
||||
|
||||
FiniteElement *sFE;
|
||||
FiniteElement *qFE;
|
||||
FiniteElement *hFE;
|
||||
public:
|
||||
|
||||
/** @brief The parameter @a Order must be either a positive number, for fixed
|
||||
order, or VariableOrder (default). */
|
||||
explicit NURBS_HCurlFECollection(int Order = VariableOrder,
|
||||
const int vdim = -1);
|
||||
|
||||
virtual void Reset() const override
|
||||
{
|
||||
SegmentFE->Reset();
|
||||
QuadrilateralFE->Reset();
|
||||
QuadrilateralVFE->Reset();
|
||||
ParallelepipedVFE->Reset();
|
||||
}
|
||||
|
||||
virtual void SetDim(const int dim) override;
|
||||
|
||||
/** @brief Set the order and the name, based on the given @a Order: either a
|
||||
positive number for fixed order, or VariableOrder. */
|
||||
virtual void SetOrder(int Order) const override;
|
||||
|
||||
const FiniteElement *
|
||||
FiniteElementForGeometry(Geometry::Type GeomType) const override;
|
||||
|
||||
int DofForGeometry(Geometry::Type GeomType) const override;
|
||||
|
||||
const int *DofOrderForOrientation(Geometry::Type GeomType,
|
||||
int Or) const override;
|
||||
|
||||
const char *Name() const override { return name; }
|
||||
|
||||
int GetContType() const override { return CONTINUOUS; }
|
||||
|
||||
FiniteElementCollection *GetTraceCollection() const override;
|
||||
|
||||
virtual ~NURBS_HCurlFECollection();
|
||||
};
|
||||
|
||||
/// Piecewise-(bi/tri)linear continuous finite elements.
|
||||
class LinearFECollection : public FiniteElementCollection
|
||||
{
|
||||
|
||||
+263
-38
@@ -1525,6 +1525,67 @@ SparseMatrix *FiniteElementSpace::RefinementMatrix_main(
|
||||
return P;
|
||||
}
|
||||
|
||||
SparseMatrix *FiniteElementSpace::VariableOrderRefinementMatrix(
|
||||
const int coarse_ndofs, const Table &coarse_elem_dof) const
|
||||
{
|
||||
MFEM_VERIFY(mesh->GetLastOperation() == Mesh::REFINE, "");
|
||||
|
||||
Array<int> dofs, coarse_dofs, coarse_vdofs;
|
||||
Vector row;
|
||||
|
||||
Mesh::GeometryList elem_geoms(*mesh);
|
||||
|
||||
SparseMatrix *P = new SparseMatrix(GetVSize(), coarse_ndofs*vdim);
|
||||
|
||||
Array<int> mark(P->Height());
|
||||
mark = 0;
|
||||
|
||||
const CoarseFineTransformations &rtrans = mesh->GetRefinementTransforms();
|
||||
DenseMatrix lP;
|
||||
IsoparametricTransformation isotr;
|
||||
for (int k = 0; k < mesh->GetNE(); k++)
|
||||
{
|
||||
const Embedding &emb = rtrans.embeddings[k];
|
||||
const Geometry::Type geom = mesh->GetElementBaseGeometry(k);
|
||||
|
||||
const FiniteElement *fe = GetFE(k);
|
||||
isotr.SetIdentityTransformation(geom);
|
||||
const int ldof = fe->GetDof();
|
||||
lP.SetSize(ldof, ldof);
|
||||
const DenseTensor &pmats = rtrans.point_matrices[geom];
|
||||
isotr.SetPointMat(pmats(emb.matrix));
|
||||
fe->GetLocalInterpolation(isotr, lP);
|
||||
|
||||
const int fine_ldof = lP.Height();
|
||||
|
||||
elem_dof->GetRow(k, dofs);
|
||||
coarse_elem_dof.GetRow(emb.parent, coarse_dofs);
|
||||
|
||||
for (int vd = 0; vd < vdim; vd++)
|
||||
{
|
||||
coarse_dofs.Copy(coarse_vdofs);
|
||||
DofsToVDofs(vd, coarse_vdofs, coarse_ndofs);
|
||||
|
||||
for (int i = 0; i < fine_ldof; i++)
|
||||
{
|
||||
const int r = DofToVDof(dofs[i], vd);
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
|
||||
if (!mark[m])
|
||||
{
|
||||
lP.GetRow(i, row);
|
||||
P->SetRow(r, coarse_vdofs, row);
|
||||
mark[m] = 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
MFEM_VERIFY(mark.Sum() == P->Height(), "Not all rows of P set.");
|
||||
P->Finalize();
|
||||
return P;
|
||||
}
|
||||
|
||||
void FiniteElementSpace::GetLocalRefinementMatrices(
|
||||
Geometry::Type geom, DenseTensor &localP) const
|
||||
{
|
||||
@@ -1556,15 +1617,20 @@ SparseMatrix* FiniteElementSpace::RefinementMatrix(int old_ndofs,
|
||||
"Previous mesh is not coarser.");
|
||||
|
||||
Mesh::GeometryList elem_geoms(*mesh);
|
||||
|
||||
DenseTensor localP[Geometry::NumGeom];
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
if (!IsVariableOrder())
|
||||
{
|
||||
GetLocalRefinementMatrices(elem_geoms[i], localP[elem_geoms[i]]);
|
||||
DenseTensor localP[Geometry::NumGeom];
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
{
|
||||
GetLocalRefinementMatrices(elem_geoms[i], localP[elem_geoms[i]]);
|
||||
}
|
||||
return RefinementMatrix_main(old_ndofs, *old_elem_dof, old_elem_fos,
|
||||
localP);
|
||||
}
|
||||
else
|
||||
{
|
||||
return VariableOrderRefinementMatrix(old_ndofs, *old_elem_dof);
|
||||
}
|
||||
|
||||
return RefinementMatrix_main(old_ndofs, *old_elem_dof, old_elem_fos,
|
||||
localP);
|
||||
}
|
||||
|
||||
FiniteElementSpace::RefinementOperator::RefinementOperator(
|
||||
@@ -1582,9 +1648,12 @@ FiniteElementSpace::RefinementOperator::RefinementOperator(
|
||||
|
||||
Mesh::GeometryList elem_geoms(*fespace->GetMesh());
|
||||
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
if (!fespace->IsVariableOrder())
|
||||
{
|
||||
fespace->GetLocalRefinementMatrices(elem_geoms[i], localP[elem_geoms[i]]);
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
{
|
||||
fespace->GetLocalRefinementMatrices(elem_geoms[i], localP[elem_geoms[i]]);
|
||||
}
|
||||
}
|
||||
|
||||
ConstructDoFTransArray();
|
||||
@@ -1597,10 +1666,13 @@ FiniteElementSpace::RefinementOperator::RefinementOperator(
|
||||
{
|
||||
Mesh::GeometryList elem_geoms(*fespace->GetMesh());
|
||||
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
if (!fespace->IsVariableOrder())
|
||||
{
|
||||
fespace->GetLocalRefinementMatrices(*coarse_fes, elem_geoms[i],
|
||||
localP[elem_geoms[i]]);
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
{
|
||||
fespace->GetLocalRefinementMatrices(*coarse_fes, elem_geoms[i],
|
||||
localP[elem_geoms[i]]);
|
||||
}
|
||||
}
|
||||
|
||||
// Make a copy of the coarse elem_dof Table.
|
||||
@@ -1676,11 +1748,25 @@ void FiniteElementSpace::RefinementOperator::Mult(const Vector &x,
|
||||
|
||||
Vector subY, subX;
|
||||
|
||||
DenseMatrix eP;
|
||||
IsoparametricTransformation isotr;
|
||||
|
||||
for (int k = 0; k < mesh_ref->GetNE(); k++)
|
||||
{
|
||||
const Embedding &emb = trans_ref.embeddings[k];
|
||||
const Geometry::Type geom = mesh_ref->GetElementBaseGeometry(k);
|
||||
const DenseMatrix &lP = localP[geom](emb.matrix);
|
||||
if (fespace->IsVariableOrder())
|
||||
{
|
||||
const FiniteElement *fe = fespace->GetFE(k);
|
||||
isotr.SetIdentityTransformation(geom);
|
||||
const int ldof = fe->GetDof();
|
||||
eP.SetSize(ldof, ldof);
|
||||
const DenseTensor &pmats = trans_ref.point_matrices[geom];
|
||||
isotr.SetPointMat(pmats(emb.matrix));
|
||||
fe->GetLocalInterpolation(isotr, eP);
|
||||
}
|
||||
const DenseMatrix &lP = (fespace->IsVariableOrder()) ? eP : localP[geom](
|
||||
emb.matrix);
|
||||
|
||||
subY.SetSize(lP.Height());
|
||||
|
||||
@@ -1745,11 +1831,28 @@ void FiniteElementSpace::RefinementOperator::MultTranspose(const Vector &x,
|
||||
|
||||
Vector subY, subX, subYt;
|
||||
|
||||
DenseMatrix eP;
|
||||
IsoparametricTransformation isotr;
|
||||
const FiniteElement *fe = nullptr;
|
||||
|
||||
for (int k = 0; k < mesh_ref->GetNE(); k++)
|
||||
{
|
||||
const Embedding &emb = trans_ref.embeddings[k];
|
||||
const Geometry::Type geom = mesh_ref->GetElementBaseGeometry(k);
|
||||
const DenseMatrix &lP = localP[geom](emb.matrix);
|
||||
|
||||
if (fespace->IsVariableOrder())
|
||||
{
|
||||
fe = fespace->GetFE(k);
|
||||
isotr.SetIdentityTransformation(geom);
|
||||
const int ldof = fe->GetDof();
|
||||
eP.SetSize(ldof);
|
||||
const DenseTensor &pmats = trans_ref.point_matrices[geom];
|
||||
isotr.SetPointMat(pmats(emb.matrix));
|
||||
fe->GetLocalInterpolation(isotr, eP);
|
||||
}
|
||||
|
||||
const DenseMatrix &lP = (fespace->IsVariableOrder()) ? eP : localP[geom](
|
||||
emb.matrix);
|
||||
|
||||
DofTransformation *doftrans = fespace->GetElementDofs(k, f_dofs);
|
||||
old_elem_dof->GetRow(emb.parent, c_dofs);
|
||||
@@ -2108,9 +2211,12 @@ SparseMatrix* FiniteElementSpace::DerefinementMatrix(int old_ndofs,
|
||||
Mesh::GeometryList elem_geoms(*mesh);
|
||||
|
||||
DenseTensor localR[Geometry::NumGeom];
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
if (!IsVariableOrder())
|
||||
{
|
||||
GetLocalDerefinementMatrices(elem_geoms[i], localR[elem_geoms[i]]);
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
{
|
||||
GetLocalDerefinementMatrices(elem_geoms[i], localR[elem_geoms[i]]);
|
||||
}
|
||||
}
|
||||
|
||||
SparseMatrix *R = new SparseMatrix(ndofs*vdim, old_ndofs*vdim);
|
||||
@@ -2125,14 +2231,34 @@ SparseMatrix* FiniteElementSpace::DerefinementMatrix(int old_ndofs,
|
||||
|
||||
bool is_dg = FEColl()->GetContType() == FiniteElementCollection::DISCONTINUOUS;
|
||||
int num_marked = 0;
|
||||
const FiniteElement *fe = nullptr;
|
||||
DenseMatrix localRVO; //for variable order only
|
||||
for (int k = 0; k < dtrans.embeddings.Size(); k++)
|
||||
{
|
||||
const Embedding &emb = dtrans.embeddings[k];
|
||||
Geometry::Type geom = mesh->GetElementBaseGeometry(emb.parent);
|
||||
DenseMatrix &lR = localR[geom](emb.matrix);
|
||||
|
||||
if (IsVariableOrder())
|
||||
{
|
||||
fe = GetFE(emb.parent);
|
||||
const DenseTensor &pmats = dtrans.point_matrices[geom];
|
||||
const int ldof = fe->GetDof();
|
||||
|
||||
IsoparametricTransformation isotr;
|
||||
isotr.SetIdentityTransformation(geom);
|
||||
|
||||
localRVO.SetSize(ldof, ldof);
|
||||
isotr.SetPointMat(pmats(emb.matrix));
|
||||
// Local restriction is size ldofxldof assuming that the parent and
|
||||
// child are of same polynomial order.
|
||||
fe->GetLocalRestriction(isotr, localRVO);
|
||||
}
|
||||
DenseMatrix &lR = IsVariableOrder() ? localRVO : localR[geom](emb.matrix);
|
||||
|
||||
elem_dof->GetRow(emb.parent, dofs);
|
||||
old_elem_dof->GetRow(k, old_dofs);
|
||||
MFEM_VERIFY(old_dofs.Size() == dofs.Size(),
|
||||
"Parent and child must have same #dofs.");
|
||||
|
||||
for (int vd = 0; vd < vdim; vd++)
|
||||
{
|
||||
@@ -2158,7 +2284,7 @@ SparseMatrix* FiniteElementSpace::DerefinementMatrix(int old_ndofs,
|
||||
}
|
||||
}
|
||||
|
||||
if (!is_dg)
|
||||
if (!is_dg && !IsVariableOrder())
|
||||
{
|
||||
MFEM_VERIFY(num_marked == R->Height(),
|
||||
"internal error: not all rows of R were set.");
|
||||
@@ -2216,6 +2342,7 @@ void FiniteElementSpace::Constructor(Mesh *mesh_, NURBSExtension *NURBSext_,
|
||||
|
||||
const NURBSFECollection *nurbs_fec =
|
||||
dynamic_cast<const NURBSFECollection *>(fec_);
|
||||
|
||||
if (nurbs_fec)
|
||||
{
|
||||
MFEM_VERIFY(mesh_->NURBSext, "NURBS FE space requires a NURBS mesh.");
|
||||
@@ -2312,12 +2439,63 @@ void FiniteElementSpace::UpdateNURBS()
|
||||
face_dof = NULL;
|
||||
face_to_be.DeleteAll();
|
||||
|
||||
// Depending on the element type create the appropriate extensions
|
||||
// for the individual components.
|
||||
dynamic_cast<const NURBSFECollection *>(fec)->Reset();
|
||||
|
||||
ndofs = NURBSext->GetNDof();
|
||||
elem_dof = NURBSext->GetElementDofTable();
|
||||
bdr_elem_dof = NURBSext->GetBdrElementDofTable();
|
||||
if (dynamic_cast<const NURBS_HDivFECollection *>(fec))
|
||||
{
|
||||
VNURBSext.SetSize(mesh->Dimension());
|
||||
for (int d = 0; d < mesh->Dimension(); d++)
|
||||
{
|
||||
VNURBSext[d] = NURBSext->GetDivExtension(d);
|
||||
}
|
||||
}
|
||||
|
||||
if (dynamic_cast<const NURBS_HCurlFECollection *>(fec))
|
||||
{
|
||||
VNURBSext.SetSize(mesh->Dimension());
|
||||
for (int d = 0; d < mesh->Dimension(); d++)
|
||||
{
|
||||
VNURBSext[d] = NURBSext->GetCurlExtension(d);
|
||||
}
|
||||
}
|
||||
|
||||
// If required: concatenate the dof tables of the individual components into
|
||||
// one dof table for the vector fespace.
|
||||
if (VNURBSext.Size() == 2)
|
||||
{
|
||||
int offset1 = VNURBSext[0]->GetNDof();
|
||||
ndofs = VNURBSext[0]->GetNDof() + VNURBSext[1]->GetNDof();
|
||||
|
||||
// Merge Tables
|
||||
elem_dof = new Table(*VNURBSext[0]->GetElementDofTable(),
|
||||
*VNURBSext[1]->GetElementDofTable(),offset1 );
|
||||
|
||||
bdr_elem_dof = new Table(*VNURBSext[0]->GetBdrElementDofTable(),
|
||||
*VNURBSext[1]->GetBdrElementDofTable(),offset1);
|
||||
}
|
||||
else if (VNURBSext.Size() == 3)
|
||||
{
|
||||
int offset1 = VNURBSext[0]->GetNDof();
|
||||
int offset2 = offset1 + VNURBSext[1]->GetNDof();
|
||||
ndofs = offset2 + VNURBSext[2]->GetNDof();
|
||||
|
||||
// Merge Tables
|
||||
elem_dof = new Table(*VNURBSext[0]->GetElementDofTable(),
|
||||
*VNURBSext[1]->GetElementDofTable(),offset1,
|
||||
*VNURBSext[2]->GetElementDofTable(),offset2);
|
||||
|
||||
bdr_elem_dof = new Table(*VNURBSext[0]->GetBdrElementDofTable(),
|
||||
*VNURBSext[1]->GetBdrElementDofTable(),offset1,
|
||||
*VNURBSext[2]->GetBdrElementDofTable(),offset2);
|
||||
}
|
||||
else
|
||||
{
|
||||
ndofs = NURBSext->GetNDof();
|
||||
elem_dof = NURBSext->GetElementDofTable();
|
||||
bdr_elem_dof = NURBSext->GetBdrElementDofTable();
|
||||
}
|
||||
mesh_sequence = mesh->GetSequence();
|
||||
sequence++;
|
||||
}
|
||||
@@ -3319,11 +3497,21 @@ void FiniteElementSpace::Destroy()
|
||||
dof_elem_array.DeleteAll();
|
||||
dof_ldof_array.DeleteAll();
|
||||
|
||||
for (int i = 0; i < VNURBSext.Size(); i++)
|
||||
{
|
||||
delete VNURBSext[i];
|
||||
}
|
||||
|
||||
if (NURBSext)
|
||||
{
|
||||
if (own_ext) { delete NURBSext; }
|
||||
delete face_dof;
|
||||
face_to_be.DeleteAll();
|
||||
if (VNURBSext.Size() > 0 )
|
||||
{
|
||||
delete elem_dof;
|
||||
delete bdr_elem_dof;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -3335,6 +3523,8 @@ void FiniteElementSpace::Destroy()
|
||||
delete [] bdofs;
|
||||
}
|
||||
ceed::RemoveBasisAndRestriction(this);
|
||||
|
||||
|
||||
}
|
||||
|
||||
void FiniteElementSpace::DestroyDoFTransArray()
|
||||
@@ -3353,19 +3543,27 @@ void FiniteElementSpace::GetTransferOperator(
|
||||
|
||||
if (T.Type() == Operator::MFEM_SPARSEMAT)
|
||||
{
|
||||
Mesh::GeometryList elem_geoms(*mesh);
|
||||
|
||||
DenseTensor localP[Geometry::NumGeom];
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
if (!IsVariableOrder())
|
||||
{
|
||||
GetLocalRefinementMatrices(coarse_fes, elem_geoms[i],
|
||||
localP[elem_geoms[i]]);
|
||||
Mesh::GeometryList elem_geoms(*mesh);
|
||||
|
||||
DenseTensor localP[Geometry::NumGeom];
|
||||
for (int i = 0; i < elem_geoms.Size(); i++)
|
||||
{
|
||||
GetLocalRefinementMatrices(coarse_fes, elem_geoms[i],
|
||||
localP[elem_geoms[i]]);
|
||||
}
|
||||
T.Reset(RefinementMatrix_main(coarse_fes.GetNDofs(),
|
||||
coarse_fes.GetElementToDofTable(),
|
||||
coarse_fes.
|
||||
GetElementToFaceOrientationTable(),
|
||||
localP));
|
||||
}
|
||||
else
|
||||
{
|
||||
T.Reset(VariableOrderRefinementMatrix(coarse_fes.GetNDofs(),
|
||||
coarse_fes.GetElementToDofTable()));
|
||||
}
|
||||
T.Reset(RefinementMatrix_main(coarse_fes.GetNDofs(),
|
||||
coarse_fes.GetElementToDofTable(),
|
||||
coarse_fes.
|
||||
GetElementToFaceOrientationTable(),
|
||||
localP));
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -3416,19 +3614,33 @@ void FiniteElementSpace::GetTrueTransferOperator(
|
||||
|
||||
void FiniteElementSpace::UpdateElementOrders()
|
||||
{
|
||||
const CoarseFineTransformations &cf_tr = mesh->GetRefinementTransforms();
|
||||
|
||||
Array<char> new_order(mesh->GetNE());
|
||||
switch (mesh->GetLastOperation())
|
||||
{
|
||||
case Mesh::REFINE:
|
||||
{
|
||||
const CoarseFineTransformations &cf_tr = mesh->GetRefinementTransforms();
|
||||
for (int i = 0; i < mesh->GetNE(); i++)
|
||||
{
|
||||
new_order[i] = elem_order[cf_tr.embeddings[i].parent];
|
||||
}
|
||||
break;
|
||||
}
|
||||
case Mesh::DEREFINE:
|
||||
{
|
||||
const CoarseFineTransformations &cf_tr =
|
||||
mesh->ncmesh->GetDerefinementTransforms();
|
||||
Table coarse_to_fine;
|
||||
cf_tr.MakeCoarseToFineTable(coarse_to_fine);
|
||||
Array<int> tabrow;
|
||||
for (int i = 0; i < coarse_to_fine.Size(); i++)
|
||||
{
|
||||
coarse_to_fine.GetRow(i, tabrow);
|
||||
//For now we require that all children are of same polynomial order.
|
||||
new_order[i] = elem_order[tabrow[0]];
|
||||
}
|
||||
break;
|
||||
}
|
||||
default:
|
||||
MFEM_ABORT("not implemented yet");
|
||||
}
|
||||
@@ -3523,11 +3735,23 @@ void FiniteElementSpace::Update(bool want_transform)
|
||||
{
|
||||
BuildConformingInterpolation();
|
||||
Th.Reset(DerefinementMatrix(old_ndofs, old_elem_dof, old_elem_fos));
|
||||
if (cP && cR)
|
||||
if (IsVariableOrder())
|
||||
{
|
||||
Th.SetOperatorOwner(false);
|
||||
Th.Reset(new TripleProductOperator(cP.get(), cR.get(), Th.Ptr(),
|
||||
false, false, true));
|
||||
if (cP && cR_hp)
|
||||
{
|
||||
Th.SetOperatorOwner(false);
|
||||
Th.Reset(new TripleProductOperator(cP.get(), cR_hp.get(), Th.Ptr(),
|
||||
false, false, true));
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
if (cP && cR)
|
||||
{
|
||||
Th.SetOperatorOwner(false);
|
||||
Th.Reset(new TripleProductOperator(cP.get(), cR.get(), Th.Ptr(),
|
||||
false, false, true));
|
||||
}
|
||||
}
|
||||
break;
|
||||
}
|
||||
@@ -3640,6 +3864,7 @@ FiniteElementCollection *FiniteElementSpace::Load(Mesh *m, std::istream &input)
|
||||
input >> ord;
|
||||
|
||||
NURBSFECollection *nurbs_fec = dynamic_cast<NURBSFECollection*>(r_fec);
|
||||
if (nurbs_fec) { nurbs_fec->SetDim(m->Dimension()); }
|
||||
NURBSExtension *nurbs_ext = NULL;
|
||||
if (fes_format == 90) // original format, v0.9
|
||||
{
|
||||
|
||||
@@ -268,6 +268,10 @@ protected:
|
||||
Array<int> dof_elem_array, dof_ldof_array;
|
||||
|
||||
NURBSExtension *NURBSext;
|
||||
/** array of NURBS extension for H(div) and H(curl) vector elements.
|
||||
For each direction an extension is created from the base NURBSext,
|
||||
with an increase in order in the appropriate direction. */
|
||||
Array<NURBSExtension*> VNURBSext;
|
||||
int own_ext;
|
||||
mutable Array<int> face_to_be; // NURBS FE space only
|
||||
|
||||
@@ -469,6 +473,11 @@ protected:
|
||||
const Table *coarse_elem_fos,
|
||||
const DenseTensor localP[]) const;
|
||||
|
||||
/* This method returns the Refinement matrix (i.e., the embedding)
|
||||
from a coarse variable-order fes to a fine fes (after a geometric refinement) */
|
||||
SparseMatrix *VariableOrderRefinementMatrix(const int coarse_ndofs,
|
||||
const Table &coarse_elem_dof) const;
|
||||
|
||||
void GetLocalRefinementMatrices(Geometry::Type geom,
|
||||
DenseTensor &localP) const;
|
||||
void GetLocalDerefinementMatrices(Geometry::Type geom,
|
||||
@@ -517,6 +526,8 @@ protected:
|
||||
const Array<int> *perm);
|
||||
|
||||
public:
|
||||
|
||||
|
||||
/** @brief Default constructor: the object is invalid until initialized using
|
||||
the method Load(). */
|
||||
FiniteElementSpace();
|
||||
|
||||
+210
-74
@@ -12,6 +12,8 @@
|
||||
// Implementation of GridFunction
|
||||
|
||||
#include "gridfunc.hpp"
|
||||
#include "linearform.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "quadinterpolator.hpp"
|
||||
#include "../mesh/nurbs.hpp"
|
||||
#include "../general/text.hpp"
|
||||
@@ -39,7 +41,7 @@ GridFunction::GridFunction(Mesh *m, std::istream &input)
|
||||
UseDevice(true);
|
||||
|
||||
fes = new FiniteElementSpace;
|
||||
fec = fes->Load(m, input);
|
||||
fec_owned = fes->Load(m, input);
|
||||
|
||||
skip_comment_lines(input, '#');
|
||||
istream::int_type next_char = input.peek();
|
||||
@@ -81,10 +83,10 @@ GridFunction::GridFunction(Mesh *m, GridFunction *gf_array[], int num_pieces)
|
||||
int vdim, ordering;
|
||||
|
||||
fes = gf_array[0]->FESpace();
|
||||
fec = FiniteElementCollection::New(fes->FEColl()->Name());
|
||||
fec_owned = FiniteElementCollection::New(fes->FEColl()->Name());
|
||||
vdim = fes->GetVDim();
|
||||
ordering = fes->GetOrdering();
|
||||
fes = new FiniteElementSpace(m, fec, vdim, ordering);
|
||||
fes = new FiniteElementSpace(m, fec_owned, vdim, ordering);
|
||||
SetSize(fes->GetVSize());
|
||||
|
||||
if (m->NURBSext)
|
||||
@@ -153,11 +155,11 @@ GridFunction::GridFunction(Mesh *m, GridFunction *gf_array[], int num_pieces)
|
||||
|
||||
void GridFunction::Destroy()
|
||||
{
|
||||
if (fec)
|
||||
if (fec_owned)
|
||||
{
|
||||
delete fes;
|
||||
delete fec;
|
||||
fec = NULL;
|
||||
delete fec_owned;
|
||||
fec_owned = NULL;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -325,10 +327,9 @@ int GridFunction::VectorDim() const
|
||||
const FiniteElement *fe;
|
||||
if (!fes->GetNE())
|
||||
{
|
||||
const FiniteElementCollection *fe_coll = fes->FEColl();
|
||||
static const Geometry::Type geoms[3] =
|
||||
{ Geometry::SEGMENT, Geometry::TRIANGLE, Geometry::TETRAHEDRON };
|
||||
fe = fe_coll->
|
||||
fe = fes->FEColl()->
|
||||
FiniteElementForGeometry(geoms[fes->GetMesh()->Dimension()-1]);
|
||||
}
|
||||
else
|
||||
@@ -350,7 +351,8 @@ int GridFunction::CurlDim() const
|
||||
{
|
||||
static const Geometry::Type geoms[3] =
|
||||
{ Geometry::SEGMENT, Geometry::TRIANGLE, Geometry::TETRAHEDRON };
|
||||
fe = fec->FiniteElementForGeometry(geoms[fes->GetMesh()->Dimension()-1]);
|
||||
fe = fes->FEColl()->
|
||||
FiniteElementForGeometry(geoms[fes->GetMesh()->Dimension()-1]);
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -1321,9 +1323,9 @@ void GridFunction::ProjectVectorFieldOn(GridFunction &vec_field, int comp)
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunction::AccumulateAndCountDerivativeValues(int comp, int der_comp,
|
||||
GridFunction &der,
|
||||
Array<int> &zones_per_dof)
|
||||
void GridFunction::AccumulateAndCountDerivativeValues(
|
||||
int comp, int der_comp, GridFunction &der,
|
||||
Array<int> &zones_per_dof) const
|
||||
{
|
||||
FiniteElementSpace * der_fes = der.FESpace();
|
||||
ElementTransformation * transf;
|
||||
@@ -1374,7 +1376,8 @@ void GridFunction::AccumulateAndCountDerivativeValues(int comp, int der_comp,
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunction::GetDerivative(int comp, int der_comp, GridFunction &der)
|
||||
void GridFunction::GetDerivative(int comp, int der_comp,
|
||||
GridFunction &der) const
|
||||
{
|
||||
Array<int> overlap;
|
||||
AccumulateAndCountDerivativeValues(comp, der_comp, der, overlap);
|
||||
@@ -2061,41 +2064,37 @@ void GridFunction::AccumulateAndCountBdrValues(
|
||||
Coefficient *coeff[], VectorCoefficient *vcoeff, const Array<int> &attr,
|
||||
Array<int> &values_counter)
|
||||
{
|
||||
int i, j, fdof, d, ind, vdim;
|
||||
real_t val;
|
||||
const FiniteElement *fe;
|
||||
ElementTransformation *transf;
|
||||
Array<int> vdofs;
|
||||
Vector vc;
|
||||
|
||||
values_counter.SetSize(Size());
|
||||
values_counter = 0;
|
||||
|
||||
vdim = fes->GetVDim();
|
||||
|
||||
const int vdim = fes->GetVDim();
|
||||
HostReadWrite();
|
||||
|
||||
for (i = 0; i < fes->GetNBE(); i++)
|
||||
for (int i = 0; i < fes->GetNBE(); i++)
|
||||
{
|
||||
if (attr[fes->GetBdrAttribute(i) - 1] == 0) { continue; }
|
||||
|
||||
fe = fes->GetBE(i);
|
||||
fdof = fe->GetDof();
|
||||
transf = fes->GetBdrElementTransformation(i);
|
||||
const FiniteElement *fe = fes->GetBE(i);
|
||||
const int fdof = fe->GetDof();
|
||||
ElementTransformation *transf = fes->GetBdrElementTransformation(i);
|
||||
const IntegrationRule &ir = fe->GetNodes();
|
||||
fes->GetBdrElementVDofs(i, vdofs);
|
||||
|
||||
for (j = 0; j < fdof; j++)
|
||||
for (int j = 0; j < fdof; j++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir.IntPoint(j);
|
||||
transf->SetIntPoint(&ip);
|
||||
if (vcoeff) { vcoeff->Eval(vc, *transf, ip); }
|
||||
for (d = 0; d < vdim; d++)
|
||||
for (int d = 0; d < vdim; d++)
|
||||
{
|
||||
if (!vcoeff && !coeff[d]) { continue; }
|
||||
|
||||
val = vcoeff ? vc(d) : coeff[d]->Eval(*transf, ip);
|
||||
if ( (ind = vdofs[fdof*d+j]) < 0 )
|
||||
real_t val = vcoeff ? vc(d) : coeff[d]->Eval(*transf, ip);
|
||||
int ind = vdofs[fdof*d+j];
|
||||
if ( ind < 0 )
|
||||
{
|
||||
val = -val, ind = -1-ind;
|
||||
}
|
||||
@@ -2117,10 +2116,11 @@ void GridFunction::AccumulateAndCountBdrValues(
|
||||
// iff A_ij != 0. It is sufficient to resolve just the first level of
|
||||
// dependency, since A is a projection matrix: A^n = A due to cR.cP = I.
|
||||
// Cases like these arise in 3D when boundary edges are constrained by
|
||||
// (depend on) internal faces/elements. We use the virtual method
|
||||
// GetBoundaryClosure from NCMesh to resolve the dependencies.
|
||||
|
||||
if (fes->Nonconforming() && fes->GetMesh()->Dimension() == 3)
|
||||
// (depend on) internal faces/elements, or for internal boundaries in 2 or
|
||||
// 3D. We use the virtual method GetBoundaryClosure from NCMesh to resolve
|
||||
// the dependencies.
|
||||
if (fes->Nonconforming() && (fes->GetMesh()->Dimension() == 2 ||
|
||||
fes->GetMesh()->Dimension() == 3))
|
||||
{
|
||||
Vector vals;
|
||||
Mesh *mesh = fes->GetMesh();
|
||||
@@ -2128,26 +2128,19 @@ void GridFunction::AccumulateAndCountBdrValues(
|
||||
Array<int> bdr_edges, bdr_vertices, bdr_faces;
|
||||
ncmesh->GetBoundaryClosure(attr, bdr_vertices, bdr_edges, bdr_faces);
|
||||
|
||||
for (i = 0; i < bdr_edges.Size(); i++)
|
||||
auto mark_dofs = [&](ElementTransformation &transf, const FiniteElement &fe)
|
||||
{
|
||||
int edge = bdr_edges[i];
|
||||
fes->GetEdgeVDofs(edge, vdofs);
|
||||
if (vdofs.Size() == 0) { continue; }
|
||||
|
||||
transf = mesh->GetEdgeTransformation(edge);
|
||||
transf->Attribute = -1; // TODO: set the boundary attribute
|
||||
fe = fes->GetEdgeElement(edge);
|
||||
if (!vcoeff)
|
||||
{
|
||||
vals.SetSize(fe->GetDof());
|
||||
for (d = 0; d < vdim; d++)
|
||||
vals.SetSize(fe.GetDof());
|
||||
for (int d = 0; d < vdim; d++)
|
||||
{
|
||||
if (!coeff[d]) { continue; }
|
||||
|
||||
fe->Project(*coeff[d], *transf, vals);
|
||||
fe.Project(*coeff[d], transf, vals);
|
||||
for (int k = 0; k < vals.Size(); k++)
|
||||
{
|
||||
ind = vdofs[d*vals.Size()+k];
|
||||
const int ind = vdofs[d*vals.Size()+k];
|
||||
if (++values_counter[ind] == 1)
|
||||
{
|
||||
(*this)(ind) = vals(k);
|
||||
@@ -2161,11 +2154,11 @@ void GridFunction::AccumulateAndCountBdrValues(
|
||||
}
|
||||
else // vcoeff != NULL
|
||||
{
|
||||
vals.SetSize(vdim*fe->GetDof());
|
||||
fe->Project(*vcoeff, *transf, vals);
|
||||
vals.SetSize(vdim*fe.GetDof());
|
||||
fe.Project(*vcoeff, transf, vals);
|
||||
for (int k = 0; k < vals.Size(); k++)
|
||||
{
|
||||
ind = vdofs[k];
|
||||
const int ind = vdofs[k];
|
||||
if (++values_counter[ind] == 1)
|
||||
{
|
||||
(*this)(ind) = vals(k);
|
||||
@@ -2176,6 +2169,26 @@ void GridFunction::AccumulateAndCountBdrValues(
|
||||
}
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
for (auto edge : bdr_edges)
|
||||
{
|
||||
fes->GetEdgeVDofs(edge, vdofs);
|
||||
if (vdofs.Size() == 0) { continue; }
|
||||
|
||||
ElementTransformation *transf = mesh->GetEdgeTransformation(edge);
|
||||
const FiniteElement *fe = fes->GetEdgeElement(edge);
|
||||
mark_dofs(*transf, *fe);
|
||||
}
|
||||
|
||||
for (auto face : bdr_faces)
|
||||
{
|
||||
fes->GetFaceVDofs(face, vdofs);
|
||||
if (vdofs.Size() == 0) { continue; }
|
||||
|
||||
ElementTransformation *transf = mesh->GetFaceTransformation(face);
|
||||
const FiniteElement *fe = fes->GetFaceElement(face);
|
||||
mark_dofs(*transf, *fe);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -2228,26 +2241,37 @@ void GridFunction::AccumulateAndCountBdrTangentValues(
|
||||
accumulate_dofs(dofs, lvec, *this, values_counter);
|
||||
}
|
||||
|
||||
if (fes->Nonconforming() && fes->GetMesh()->Dimension() == 3)
|
||||
if (fes->Nonconforming() && (fes->GetMesh()->Dimension() == 2 ||
|
||||
fes->GetMesh()->Dimension() == 3))
|
||||
{
|
||||
Mesh *mesh = fes->GetMesh();
|
||||
NCMesh *ncmesh = mesh->ncmesh;
|
||||
Array<int> bdr_edges, bdr_vertices, bdr_faces;
|
||||
ncmesh->GetBoundaryClosure(bdr_attr, bdr_vertices, bdr_edges, bdr_faces);
|
||||
|
||||
for (int i = 0; i < bdr_edges.Size(); i++)
|
||||
for (auto edge : bdr_edges)
|
||||
{
|
||||
int edge = bdr_edges[i];
|
||||
fes->GetEdgeDofs(edge, dofs);
|
||||
if (dofs.Size() == 0) { continue; }
|
||||
|
||||
T = mesh->GetEdgeTransformation(edge);
|
||||
T->Attribute = -1; // TODO: set the boundary attribute
|
||||
fe = fes->GetEdgeElement(edge);
|
||||
lvec.SetSize(fe->GetDof());
|
||||
fe->Project(vcoeff, *T, lvec);
|
||||
accumulate_dofs(dofs, lvec, *this, values_counter);
|
||||
}
|
||||
|
||||
for (auto face : bdr_faces)
|
||||
{
|
||||
fes->GetFaceDofs(face, dofs);
|
||||
if (dofs.Size() == 0) { continue; }
|
||||
|
||||
T = mesh->GetFaceTransformation(face);
|
||||
fe = fes->GetFaceElement(face);
|
||||
lvec.SetSize(fe->GetDof());
|
||||
fe->Project(vcoeff, *T, lvec);
|
||||
accumulate_dofs(dofs, lvec, *this, values_counter);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -2350,19 +2374,48 @@ void GridFunction::ProjectCoefficient(Coefficient &coeff)
|
||||
|
||||
if (delta_c == NULL)
|
||||
{
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
|
||||
for (int i = 0; i < fes->GetNE(); i++)
|
||||
if (fes->GetNURBSext() == NULL)
|
||||
{
|
||||
doftrans = fes->GetElementVDofs(i, vdofs);
|
||||
vals.SetSize(vdofs.Size());
|
||||
fes->GetFE(i)->Project(coeff, *fes->GetElementTransformation(i), vals);
|
||||
if (doftrans)
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
|
||||
for (int i = 0; i < fes->GetNE(); i++)
|
||||
{
|
||||
doftrans->TransformPrimal(vals);
|
||||
doftrans = fes->GetElementVDofs(i, vdofs);
|
||||
vals.SetSize(vdofs.Size());
|
||||
fes->GetFE(i)->Project(coeff, *fes->GetElementTransformation(i), vals);
|
||||
if (doftrans)
|
||||
{
|
||||
doftrans->TransformPrimal(vals);
|
||||
}
|
||||
SetSubVector(vdofs, vals);
|
||||
}
|
||||
SetSubVector(vdofs, vals);
|
||||
}
|
||||
else
|
||||
{
|
||||
// Define and assemble linear form
|
||||
LinearForm b(fes);
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(coeff));
|
||||
b.Assemble();
|
||||
|
||||
// Define and assemble bilinear form
|
||||
BilinearForm a(fes);
|
||||
a.AddDomainIntegrator(new MassIntegrator());
|
||||
a.Assemble();
|
||||
|
||||
// Set solver and preconditioner
|
||||
SparseMatrix A(a.SpMat());
|
||||
GSSmoother prec(A);
|
||||
CGSolver cg;
|
||||
cg.SetOperator(A);
|
||||
cg.SetPreconditioner(prec);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(1000);
|
||||
cg.SetPrintLevel(0);
|
||||
|
||||
// Solve and get solution
|
||||
*this = 0.0;
|
||||
cg.Mult(b,*this);
|
||||
}
|
||||
}
|
||||
else
|
||||
@@ -2403,22 +2456,54 @@ void GridFunction::ProjectCoefficient(
|
||||
|
||||
void GridFunction::ProjectCoefficient(VectorCoefficient &vcoeff)
|
||||
{
|
||||
int i;
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
|
||||
DofTransformation * doftrans = NULL;
|
||||
|
||||
for (i = 0; i < fes->GetNE(); i++)
|
||||
if (fes->GetNURBSext() == NULL)
|
||||
{
|
||||
doftrans = fes->GetElementVDofs(i, vdofs);
|
||||
vals.SetSize(vdofs.Size());
|
||||
fes->GetFE(i)->Project(vcoeff, *fes->GetElementTransformation(i), vals);
|
||||
if (doftrans)
|
||||
|
||||
int i;
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
|
||||
DofTransformation * doftrans = NULL;
|
||||
|
||||
for (i = 0; i < fes->GetNE(); i++)
|
||||
{
|
||||
doftrans->TransformPrimal(vals);
|
||||
doftrans = fes->GetElementVDofs(i, vdofs);
|
||||
vals.SetSize(vdofs.Size());
|
||||
fes->GetFE(i)->Project(vcoeff, *fes->GetElementTransformation(i), vals);
|
||||
if (doftrans)
|
||||
{
|
||||
doftrans->TransformPrimal(vals);
|
||||
}
|
||||
SetSubVector(vdofs, vals);
|
||||
}
|
||||
SetSubVector(vdofs, vals);
|
||||
|
||||
}
|
||||
|
||||
else
|
||||
{
|
||||
// Define and assemble linear form
|
||||
LinearForm b(fes);
|
||||
b.AddDomainIntegrator(new VectorFEDomainLFIntegrator(vcoeff));
|
||||
b.Assemble();
|
||||
|
||||
// Define and assemble bilinear form
|
||||
BilinearForm a(fes);
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator());
|
||||
a.Assemble();
|
||||
|
||||
// Set solver and preconditioner
|
||||
SparseMatrix A(a.SpMat());
|
||||
GSSmoother prec(A);
|
||||
CGSolver cg;
|
||||
cg.SetOperator(A);
|
||||
cg.SetPreconditioner(prec);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(1000);
|
||||
cg.SetPrintLevel(0);
|
||||
|
||||
// Solve and get solution
|
||||
*this = 0.0;
|
||||
cg.Mult(b,*this);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -2966,6 +3051,57 @@ real_t GridFunction::ComputeDivError(
|
||||
return (error < 0.0) ? -sqrt(-error) : sqrt(error);
|
||||
}
|
||||
|
||||
real_t GridFunction::ComputeLaplaceError(
|
||||
Coefficient *exlap, const IntegrationRule *irs[]) const
|
||||
{
|
||||
real_t error = 0.0, a;
|
||||
const FiniteElement *fe;
|
||||
ElementTransformation *Tr;
|
||||
Array<int> dofs;
|
||||
int intorder, fdof;
|
||||
Vector laplace;
|
||||
|
||||
for (int i = 0; i < fes->GetNE(); i++)
|
||||
{
|
||||
laplace.SetSize(fdof);
|
||||
fe = fes->GetFE(i);
|
||||
Tr = fes->GetElementTransformation(i);
|
||||
intorder = 2*fe->GetOrder() + 3;
|
||||
const IntegrationRule *ir;
|
||||
if (irs)
|
||||
{
|
||||
ir = irs[fe->GetGeomType()];
|
||||
}
|
||||
else
|
||||
{
|
||||
ir = &(IntRules.Get(fe->GetGeomType(), intorder));
|
||||
}
|
||||
fes->GetElementDofs(i, dofs);
|
||||
fdof = fe->GetDof();
|
||||
laplace.SetSize(fdof);
|
||||
for (int j = 0; j < ir->GetNPoints(); j++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(j);
|
||||
Tr->SetIntPoint(&ip);
|
||||
fe->CalcPhysLaplacian(*Tr, laplace);
|
||||
a = 0;
|
||||
for (int k = 0; k < fdof; k++)
|
||||
if (dofs[k] >= 0)
|
||||
{
|
||||
a += (*this)(dofs[k]) * laplace(k);
|
||||
}
|
||||
else
|
||||
{
|
||||
a -= (*this)(-1-dofs[k]) * laplace(k);
|
||||
}
|
||||
a -= exlap->Eval(*Tr, ip);
|
||||
error += ip.weight * Tr->Weight() * a * a;
|
||||
}
|
||||
}
|
||||
|
||||
return (error < 0.0) ? -sqrt(-error) : sqrt(error);
|
||||
}
|
||||
|
||||
real_t GridFunction::ComputeDGFaceJumpError(Coefficient *exsol,
|
||||
Coefficient *ell_coeff,
|
||||
class JumpScaling jump_scaling,
|
||||
@@ -3904,7 +4040,7 @@ void GridFunction::LegacyNCReorder()
|
||||
mesh->GetEdgeVertices(i, ev);
|
||||
if (old_vertex[ev[0]] > old_vertex[ev[1]])
|
||||
{
|
||||
const int *ind = fec->DofOrderForOrientation(Geometry::SEGMENT, -1);
|
||||
const int *ind = fes->FEColl()->DofOrderForOrientation(Geometry::SEGMENT, -1);
|
||||
|
||||
fes->GetEdgeInteriorDofs(i, dofs);
|
||||
for (int k = 0; k < dofs.Size(); k++)
|
||||
|
||||
+21
-15
@@ -30,14 +30,14 @@ namespace mfem
|
||||
class GridFunction : public Vector
|
||||
{
|
||||
protected:
|
||||
/// FE space on which the grid function lives. Owned if #fec is not NULL.
|
||||
/// FE space on which the grid function lives. Owned if #fec_owned is not NULL.
|
||||
FiniteElementSpace *fes;
|
||||
|
||||
/** @brief Used when the grid function is read from a file. It can also be
|
||||
set explicitly, see MakeOwner().
|
||||
|
||||
If not NULL, this pointer is owned by the GridFunction. */
|
||||
FiniteElementCollection *fec;
|
||||
FiniteElementCollection *fec_owned;
|
||||
|
||||
long fes_sequence; // see FiniteElementSpace::sequence, Mesh::sequence
|
||||
|
||||
@@ -72,16 +72,16 @@ protected:
|
||||
|
||||
public:
|
||||
|
||||
GridFunction() { fes = NULL; fec = NULL; fes_sequence = 0; UseDevice(true); }
|
||||
GridFunction() { fes = NULL; fec_owned = NULL; fes_sequence = 0; UseDevice(true); }
|
||||
|
||||
/// Copy constructor. The internal true-dof vector #t_vec is not copied.
|
||||
GridFunction(const GridFunction &orig)
|
||||
: Vector(orig), fes(orig.fes), fec(NULL), fes_sequence(orig.fes_sequence)
|
||||
: Vector(orig), fes(orig.fes), fec_owned(NULL), fes_sequence(orig.fes_sequence)
|
||||
{ UseDevice(true); }
|
||||
|
||||
/// Construct a GridFunction associated with the FiniteElementSpace @a *f.
|
||||
GridFunction(FiniteElementSpace *f) : Vector(f->GetVSize())
|
||||
{ fes = f; fec = NULL; fes_sequence = f->GetSequence(); UseDevice(true); }
|
||||
{ fes = f; fec_owned = NULL; fes_sequence = f->GetSequence(); UseDevice(true); }
|
||||
|
||||
/// Construct a GridFunction using previously allocated array @a data.
|
||||
/** The GridFunction does not assume ownership of @a data which is assumed to
|
||||
@@ -91,13 +91,13 @@ public:
|
||||
*/
|
||||
GridFunction(FiniteElementSpace *f, real_t *data)
|
||||
: Vector(data, f->GetVSize())
|
||||
{ fes = f; fec = NULL; fes_sequence = f->GetSequence(); UseDevice(true); }
|
||||
{ fes = f; fec_owned = NULL; fes_sequence = f->GetSequence(); UseDevice(true); }
|
||||
|
||||
/** @brief Construct a GridFunction using previously allocated Vector @a base
|
||||
starting at the given offset, @a base_offset. */
|
||||
GridFunction(FiniteElementSpace *f, Vector &base, int base_offset = 0)
|
||||
: Vector(base, base_offset, f->GetVSize())
|
||||
{ fes = f; fec = NULL; fes_sequence = f->GetSequence(); UseDevice(true); }
|
||||
{ fes = f; fec_owned = NULL; fes_sequence = f->GetSequence(); UseDevice(true); }
|
||||
|
||||
/// Construct a GridFunction on the given Mesh, using the data from @a input.
|
||||
/** The content of @a input should be in the format created by the method
|
||||
@@ -116,12 +116,12 @@ public:
|
||||
GridFunction &operator=(const GridFunction &rhs)
|
||||
{ return operator=((const Vector &)rhs); }
|
||||
|
||||
/// Make the GridFunction the owner of #fec and #fes.
|
||||
/** If the new FiniteElementCollection, @a fec_, is NULL, ownership of #fec
|
||||
/// Make the GridFunction the owner of #fec_owned and #fes.
|
||||
/** If the new FiniteElementCollection, @a fec_, is NULL, ownership of #fec_owned
|
||||
and #fes is taken away. */
|
||||
void MakeOwner(FiniteElementCollection *fec_) { fec = fec_; }
|
||||
void MakeOwner(FiniteElementCollection *fec_) { fec_owned = fec_; }
|
||||
|
||||
FiniteElementCollection *OwnFEC() { return fec; }
|
||||
FiniteElementCollection *OwnFEC() { return fec_owned; }
|
||||
|
||||
int VectorDim() const;
|
||||
int CurlDim() const;
|
||||
@@ -321,7 +321,7 @@ public:
|
||||
@param[out] der The resulting derivative (scalar function). The
|
||||
FiniteElementSpace of this function must be set
|
||||
before the call. */
|
||||
void GetDerivative(int comp, int der_comp, GridFunction &der);
|
||||
void GetDerivative(int comp, int der_comp, GridFunction &der) const;
|
||||
|
||||
real_t GetDivergence(ElementTransformation &tr) const;
|
||||
|
||||
@@ -387,7 +387,8 @@ public:
|
||||
/** @brief Project @a coeff Coefficient to @a this GridFunction. The
|
||||
projection computation depends on the choice of the FiniteElementSpace
|
||||
#fes. Note that this is usually interpolation at the degrees of freedom
|
||||
in each element (not L2 projection). */
|
||||
in each element (not L2 projection). For NURBS spaces these degrees of
|
||||
freedom are not available and L2 projection is resorted to as fallback. */
|
||||
virtual void ProjectCoefficient(Coefficient &coeff);
|
||||
|
||||
/** @brief Project @a coeff Coefficient to @a this GridFunction, using one
|
||||
@@ -398,7 +399,8 @@ public:
|
||||
/** @brief Project @a vcoeff VectorCoefficient to @a this GridFunction. The
|
||||
projection computation depends on the choice of the FiniteElementSpace
|
||||
#fes. Note that this is usually interpolation at the degrees of freedom
|
||||
in each element (not L2 projection).*/
|
||||
in each element (not L2 projection). For NURBS spaces these degrees of
|
||||
freedom are not available and L2 projection is resorted to as fallback. */
|
||||
void ProjectCoefficient(VectorCoefficient &vcoeff);
|
||||
|
||||
/** @brief Project @a vcoeff VectorCoefficient to @a this GridFunction, using
|
||||
@@ -443,7 +445,7 @@ protected:
|
||||
GetDerivative() method; see its documentation. */
|
||||
void AccumulateAndCountDerivativeValues(int comp, int der_comp,
|
||||
GridFunction &der,
|
||||
Array<int> &zones_per_dof);
|
||||
Array<int> &zones_per_dof) const;
|
||||
|
||||
void AccumulateAndCountBdrValues(Coefficient *coeff[],
|
||||
VectorCoefficient *vcoeff,
|
||||
@@ -531,6 +533,10 @@ public:
|
||||
virtual real_t ComputeDivError(Coefficient *exdiv,
|
||||
const IntegrationRule *irs[] = NULL) const;
|
||||
|
||||
/// Returns ||lap u_ex - lap u_h||_L2 for H1 elements
|
||||
virtual real_t ComputeLaplaceError(Coefficient *exlap,
|
||||
const IntegrationRule *irs[] = NULL) const;
|
||||
|
||||
/// Returns the Face Jumps error for L2 elements. The error can be weighted
|
||||
/// by a constant nu, by nu/h, or nu*p^2/h, depending on the value of
|
||||
/// @a jump_scaling.
|
||||
|
||||
@@ -1352,6 +1352,85 @@ void OversetFindPointsGSLIB::Interpolate(const Vector &point_pos,
|
||||
Interpolate(field_in, field_out);
|
||||
}
|
||||
|
||||
GSOPGSLIB::GSOPGSLIB(Array<long long> &ids)
|
||||
{
|
||||
gsl_comm = new gslib::comm;
|
||||
cr = new gslib::crystal;
|
||||
#ifdef MFEM_USE_MPI
|
||||
int initialized;
|
||||
MPI_Initialized(&initialized);
|
||||
if (!initialized) { MPI_Init(NULL, NULL); }
|
||||
MPI_Comm comm = MPI_COMM_WORLD;
|
||||
comm_init(gsl_comm, comm);
|
||||
#else
|
||||
comm_init(gsl_comm, 0);
|
||||
#endif
|
||||
crystal_init(cr, gsl_comm);
|
||||
UpdateIdentifiers(ids);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
GSOPGSLIB::GSOPGSLIB(MPI_Comm comm_, Array<long long> &ids)
|
||||
: cr(NULL), gsl_comm(NULL)
|
||||
{
|
||||
gsl_comm = new gslib::comm;
|
||||
cr = new gslib::crystal;
|
||||
comm_init(gsl_comm, comm_);
|
||||
crystal_init(cr, gsl_comm);
|
||||
UpdateIdentifiers(ids);
|
||||
}
|
||||
#endif
|
||||
|
||||
GSOPGSLIB::~GSOPGSLIB()
|
||||
{
|
||||
crystal_free(cr);
|
||||
gslib_gs_free(gsl_data);
|
||||
comm_free(gsl_comm);
|
||||
delete gsl_comm;
|
||||
delete cr;
|
||||
}
|
||||
|
||||
void GSOPGSLIB::UpdateIdentifiers(const Array<long long> &ids)
|
||||
{
|
||||
long long minval = ids.Min();
|
||||
#ifdef MFEM_USE_MPI
|
||||
MPI_Allreduce(MPI_IN_PLACE, &minval, 1, MPI_LONG_LONG_INT,
|
||||
MPI_MIN, gsl_comm->c);
|
||||
#endif
|
||||
MFEM_VERIFY(minval >= 0, "Unique identifier cannot be negative.");
|
||||
if (gsl_data != NULL) { gslib_gs_free(gsl_data); }
|
||||
num_ids = ids.Size();
|
||||
gsl_data = gslib_gs_setup(ids.GetData(),
|
||||
ids.Size(),
|
||||
gsl_comm, 0,
|
||||
gslib::gs_crystal_router, 0);
|
||||
}
|
||||
|
||||
void GSOPGSLIB::GS(Vector &senddata, GSOp op)
|
||||
{
|
||||
MFEM_VERIFY(senddata.Size() == num_ids,
|
||||
"Incompatible setup and GOP operation.");
|
||||
if (op == GSOp::ADD)
|
||||
{
|
||||
gslib_gs(senddata.GetData(),gslib::gs_double,gslib::gs_add,0,gsl_data,0);
|
||||
}
|
||||
else if (op == GSOp::MUL)
|
||||
{
|
||||
gslib_gs(senddata.GetData(),gslib::gs_double,gslib::gs_mul,0,gsl_data,0);
|
||||
}
|
||||
else if (op == GSOp::MAX)
|
||||
{
|
||||
gslib_gs(senddata.GetData(),gslib::gs_double,gslib::gs_max,0,gsl_data,0);
|
||||
}
|
||||
else if (op == GSOp::MIN)
|
||||
{
|
||||
gslib_gs(senddata.GetData(),gslib::gs_double,gslib::gs_min,0,gsl_data,0);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Invalid GSOp operation.");
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
|
||||
+62
-1
@@ -23,13 +23,16 @@ struct comm;
|
||||
struct findpts_data_2;
|
||||
struct findpts_data_3;
|
||||
struct crystal;
|
||||
struct gs_data;
|
||||
}
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/** \brief FindPointsGSLIB can robustly evaluate a GridFunction on an arbitrary
|
||||
* collection of points. There are three key functions in FindPointsGSLIB:
|
||||
* collection of points.
|
||||
*
|
||||
* There are three key functions in FindPointsGSLIB:
|
||||
*
|
||||
* 1. Setup - constructs the internal data structures of gslib.
|
||||
*
|
||||
@@ -226,6 +229,7 @@ public:
|
||||
|
||||
/** \brief OversetFindPointsGSLIB enables use of findpts for arbitrary number of
|
||||
overlapping grids.
|
||||
|
||||
The parameters in this class are the same as FindPointsGSLIB with the
|
||||
difference of additional inputs required to account for more than 1 mesh. */
|
||||
class OversetFindPointsGSLIB : public FindPointsGSLIB
|
||||
@@ -290,6 +294,63 @@ public:
|
||||
using FindPointsGSLIB::Interpolate;
|
||||
};
|
||||
|
||||
/** \brief Class for gather-scatter (gs) operations on Vectors based on
|
||||
corresponding global identifiers.
|
||||
|
||||
This functionality is useful for gs-ops on DOF values across processor
|
||||
boundary, where the global identifier would be the corresponding true DOF
|
||||
index. Operations currently supported are min, max, sum, and multiplication.
|
||||
Note: identifier 0 does not participate in the gather-scatter operation and
|
||||
a given identifier can be included multiple times on a given rank.
|
||||
For example, consider a vector, v:
|
||||
- v = [0.3, 0.4, 0.25, 0.7] on rank1,
|
||||
- v = [0.6, 0.1] on rank 2,
|
||||
- v = [-0.2, 0.3, 0.7, 0.] on rank 3.
|
||||
|
||||
Consider a corresponding Array<int>, a:
|
||||
- a = [1, 2, 3, 1] on rank 1,
|
||||
- a = [3, 2] on rank 2,
|
||||
- a = [1, 2, 0, 3] on rank 3.
|
||||
|
||||
A gather-scatter "minimum" operation, done as follows:
|
||||
GSOPGSLIB gs = GSOPGSLIB(MPI_COMM_WORLD, a);
|
||||
gs.GS(v, GSOp::MIN);
|
||||
would return into v:
|
||||
- v = [-0.2, 0.1, 0., -0.2] on rank 1,
|
||||
- v = [0., 0.1] on rank 2,
|
||||
- v = [-0.2, 0.1, 0.7, 0.] on rank 3,
|
||||
where the values have been compared across all processors based on the
|
||||
integer identifier. */
|
||||
class GSOPGSLIB
|
||||
{
|
||||
protected:
|
||||
struct gslib::crystal *cr; // gslib's internal data
|
||||
struct gslib::comm *gsl_comm; // gslib's internal data
|
||||
struct gslib::gs_data *gsl_data = NULL;
|
||||
int num_ids;
|
||||
|
||||
public:
|
||||
GSOPGSLIB(Array<long long> &ids);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
GSOPGSLIB(MPI_Comm comm_, Array<long long> &ids);
|
||||
#endif
|
||||
|
||||
virtual ~GSOPGSLIB();
|
||||
|
||||
/// Supported operation types. See class description.
|
||||
enum GSOp {ADD, MUL, MIN, MAX};
|
||||
|
||||
/// Update the identifiers used for the gather-scatter operator.
|
||||
/// Same @a ids get grouped together and id == 0 does not participate.
|
||||
/// See class description.
|
||||
void UpdateIdentifiers(const Array<long long> &ids);
|
||||
|
||||
/// Gather-Scatter operation on senddata. Must match length of unique
|
||||
/// identifiers used in the constructor. See class description.
|
||||
void GS(Vector &senddata, GSOp op);
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_GSLIB
|
||||
|
||||
+5
-6
@@ -18,7 +18,6 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
|
||||
void HyperbolicFormIntegrator::AssembleElementVector(const FiniteElement &el,
|
||||
ElementTransformation &Tr,
|
||||
const Vector &elfun,
|
||||
@@ -29,7 +28,7 @@ void HyperbolicFormIntegrator::AssembleElementVector(const FiniteElement &el,
|
||||
const int dof = el.GetDof();
|
||||
|
||||
#ifdef MFEM_THREAD_SAFE
|
||||
// Local storages for element integration
|
||||
// Local storage for element integration
|
||||
|
||||
// shape function value at an integration point
|
||||
Vector shape(dof);
|
||||
@@ -62,7 +61,7 @@ void HyperbolicFormIntegrator::AssembleElementVector(const FiniteElement &el,
|
||||
ir = &IntRules.Get(Tr.GetGeometryType(), order);
|
||||
}
|
||||
|
||||
// loop over interation points
|
||||
// loop over integration points
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
@@ -92,7 +91,7 @@ void HyperbolicFormIntegrator::AssembleFaceVector(
|
||||
const int dof2 = el2.GetDof();
|
||||
|
||||
#ifdef MFEM_THREAD_SAFE
|
||||
// Local storages for element integration
|
||||
// Local storage for element integration
|
||||
|
||||
// shape function value at an integration point - first elem
|
||||
Vector shape1(dof1);
|
||||
@@ -122,7 +121,7 @@ void HyperbolicFormIntegrator::AssembleFaceVector(
|
||||
DenseMatrix elvect2_mat(elvect.GetData() + dof1 * num_equations, dof2,
|
||||
num_equations);
|
||||
|
||||
// obtain integration rule. If integration is rule is given, then use it.
|
||||
// Obtain integration rule. If integration is rule is given, then use it.
|
||||
// Otherwise, get (2*p + IntOrderOffset) order integration rule
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (!ir)
|
||||
@@ -149,7 +148,7 @@ void HyperbolicFormIntegrator::AssembleFaceVector(
|
||||
if (nor.Size() == 1) // if 1D, use 1 or -1.
|
||||
{
|
||||
// This assume the 1D integration point is in (0,1). This may not work
|
||||
// if this chages.
|
||||
// if this changes.
|
||||
nor(0) = (Tr.GetElement1IntPoint().x - 0.5) * 2.0;
|
||||
}
|
||||
else
|
||||
|
||||
+27
-34
@@ -18,43 +18,36 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// MFEM Hyperbolic Conservation Laws
|
||||
// This file contains general hyperbolic conservation element/face form
|
||||
// integrators. HyperbolicFormIntegrator and RiemannSolver are defined.
|
||||
//
|
||||
// Description:
|
||||
// HyperbolicFormIntegrator is a NonlinearFormIntegrator that implements
|
||||
// element weak divergence and interface flux
|
||||
//
|
||||
// This file contains general hyperbolic conservation element/face form
|
||||
// integrators.
|
||||
// ∫_T F(u):∇v, -∫_e F̂(u)⋅[[v]]
|
||||
//
|
||||
// HyperbolicFormIntegrator and RiemannSolver are defined.
|
||||
// HyperbolicFormIntegrator is a NonlinearFormIntegrator that implements
|
||||
// element weak divergence and interface flux
|
||||
// Here, T is an element, e is an edge, and [[⋅]] is jump. This form integrator
|
||||
// is coupled with RiemannSolver that implements the numerical flux F̂. For
|
||||
// RiemannSolver, the Rusanov flux, also known as local Lax-Friedrichs flux, is
|
||||
// provided.
|
||||
//
|
||||
// ∫_T F(u):∇v, -∫_e F̂(u)⋅[[v]]
|
||||
// To implement a specific hyperbolic conservation laws, users can create
|
||||
// derived classes from FluxFunction with overloaded ComputeFlux. One can
|
||||
// optionally overload ComputeFluxDotN to avoid creating dense matrix when
|
||||
// computing normal flux. Several example equations are also defined including:
|
||||
// advection, Burgers', shallow water, and Euler equations. Users can control
|
||||
// the quadrature rule by either providing the integration rule, or integration
|
||||
// order offset. Integration will use 2*p + IntOrderOffset order quadrature
|
||||
// rule.
|
||||
//
|
||||
// Here, T is an element, e is an edge, and [[⋅]] is jump. This form
|
||||
// integrator is coupled with RiemannSolver that implements the numerical
|
||||
// flux F̂. For RiemannSolver, the Rusanov flux, also known as local
|
||||
// Lax-Friedrichs flux, is provided.
|
||||
//
|
||||
// To implement a specific hyperbolic conservation laws, users can create
|
||||
// derived classes from FluxFunction with overloaded ComputeFlux. One can
|
||||
// optionally overload ComputeFluxDotN to avoid creating dense matrix when
|
||||
// computing normal flux. Several example equations are also defined
|
||||
// including: advection, Burgers', shallow water, and Euler equations. Users
|
||||
// can control the quadrature rule by either providing the integration rule,
|
||||
// or integration order offset. Integration will use 2*p + IntOrderOffset
|
||||
// order quadrature rule.
|
||||
//
|
||||
// At each call of HyperbolicFormIntegrator::AssembleElementVector
|
||||
// HyperbolicFormIntegrator::AssembleFaceVector, the maximum characteristic
|
||||
// speed will be updated. This will not be reinitialized automatically.
|
||||
// To reinitialize, use HyperbolicFormIntegrator::ResetMaxCharSpeed. See,
|
||||
// ex18.hpp.
|
||||
//
|
||||
// Note: To avoid communication overhead, we update the maximum
|
||||
// characteristic speed within each process. Use a proper MPI routine to
|
||||
// gather the information.
|
||||
// At each call of HyperbolicFormIntegrator::AssembleElementVector
|
||||
// HyperbolicFormIntegrator::AssembleFaceVector, the maximum characteristic
|
||||
// speed will be updated. This will not be reinitialized automatically. To
|
||||
// reinitialize, use HyperbolicFormIntegrator::ResetMaxCharSpeed. See, ex18.hpp.
|
||||
//
|
||||
// Note: To avoid communication overhead, we update the maximum characteristic
|
||||
// speed within each MPI process only. Use the appropriate MPI routine to gather
|
||||
// the information.
|
||||
|
||||
/**
|
||||
* @brief Abstract class for hyperbolic flux for a system of hyperbolic
|
||||
@@ -88,7 +81,7 @@ public:
|
||||
virtual real_t ComputeFlux(const Vector &state, ElementTransformation &Tr,
|
||||
DenseMatrix &flux) const = 0;
|
||||
/**
|
||||
* @brief Compute normal flux. Optionally overloadded in the
|
||||
* @brief Compute normal flux. Optionally overloaded in the
|
||||
* derived class to avoid creating full dense matrix for flux.
|
||||
*
|
||||
* @param[in] state state at the current integration point
|
||||
@@ -168,13 +161,13 @@ protected:
|
||||
class HyperbolicFormIntegrator : public NonlinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
// The maximum characterstic speed, updated during element/face vector assembly
|
||||
// The maximum characteristic speed, updated during element/face vector assembly
|
||||
real_t max_char_speed;
|
||||
const RiemannSolver &rsolver; // Numerical flux that maps F(u±,x) to hat(F)
|
||||
const FluxFunction &fluxFunction;
|
||||
const int IntOrderOffset; // integration order offset, 2*p + IntOrderOffset.
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
// Local storages for element integration
|
||||
// Local storage for element integration
|
||||
Vector shape; // shape function value at an integration point
|
||||
Vector state; // state value at an integration point
|
||||
DenseMatrix flux; // flux value at an integration point
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
@@ -563,7 +563,7 @@ void DiffusionIntegrator::AssemblePatchMatrix_fullQuadrature(
|
||||
cdofs.SetSize(maxw[0], maxw[1], maxw[2]);
|
||||
|
||||
// Compute sparsity of the sparse matrix
|
||||
smati = new int[ndof+1];
|
||||
smati = Memory<int>(ndof+1);
|
||||
smati[0] = 0;
|
||||
|
||||
for (int dof_j=0; dof_j<ndof; ++dof_j)
|
||||
@@ -586,8 +586,8 @@ void DiffusionIntegrator::AssemblePatchMatrix_fullQuadrature(
|
||||
nnz += ndd;
|
||||
}
|
||||
|
||||
smatj = new int[nnz];
|
||||
smata = new real_t[nnz];
|
||||
smatj = Memory<int>(nnz);
|
||||
smata = Memory<real_t>(nnz);
|
||||
|
||||
for (int i=0; i<nnz; ++i)
|
||||
{
|
||||
@@ -973,7 +973,7 @@ void DiffusionIntegrator::AssemblePatchMatrix_reducedQuadrature(
|
||||
cdofs.SetSize(maxw[0], maxw[1], maxw[2]);
|
||||
|
||||
// Compute sparsity of the sparse matrix
|
||||
smati = new int[ndof+1];
|
||||
smati = Memory<int>(ndof+1);
|
||||
smati[0] = 0;
|
||||
|
||||
for (int dof_j=0; dof_j<ndof; ++dof_j)
|
||||
@@ -996,8 +996,8 @@ void DiffusionIntegrator::AssemblePatchMatrix_reducedQuadrature(
|
||||
nnz += ndd;
|
||||
}
|
||||
|
||||
smatj = new int[nnz];
|
||||
smata = new real_t[nnz];
|
||||
smatj = Memory<int>(nnz);
|
||||
smata = Memory<real_t>(nnz);
|
||||
|
||||
for (int i=0; i<nnz; ++i)
|
||||
{
|
||||
|
||||
@@ -157,7 +157,7 @@ void ElasticityAddMultPA_(const int nDofs, const FiniteElementSpace &fespace,
|
||||
static constexpr int aSize = aUpper-aLower;
|
||||
static constexpr bool isComponent = (i_block >= 0);
|
||||
|
||||
//Assuming all elements are the same
|
||||
// Assuming all elements are the same
|
||||
const auto &ir = QVec.GetIntRule(0);
|
||||
const QuadratureInterpolator *E_To_Q_Map = fespace.GetQuadratureInterpolator(
|
||||
ir);
|
||||
@@ -180,7 +180,7 @@ void ElasticityAddMultPA_(const int nDofs, const FiniteElementSpace &fespace,
|
||||
auto invJ = inv(make_tensor<d, d>(
|
||||
[&](int i, int j) { return J(p, i, j, e); }));
|
||||
tensor<real_t, aSize, d> gradx;
|
||||
//load grad(x) into gradx
|
||||
// load grad(x) into gradx
|
||||
if (isComponent)
|
||||
{
|
||||
for (int i = 0; i < d; i++)
|
||||
@@ -198,11 +198,11 @@ void ElasticityAddMultPA_(const int nDofs, const FiniteElementSpace &fespace,
|
||||
}
|
||||
}
|
||||
}
|
||||
//compute divergence
|
||||
// compute divergence
|
||||
real_t div = 0.;
|
||||
for (int i = aLower; i < aUpper; i++)
|
||||
{
|
||||
//take size of gradx into account
|
||||
// take size of gradx into account
|
||||
const int iIndex = isComponent ? 0 : i;
|
||||
div += gradx(iIndex,i);
|
||||
}
|
||||
@@ -211,11 +211,11 @@ void ElasticityAddMultPA_(const int nDofs, const FiniteElementSpace &fespace,
|
||||
{
|
||||
for (int q = qLower; q < qUpper; q++)
|
||||
{
|
||||
//compute contraction of 4*sym(grad(u))sym(grad(v)) term.
|
||||
//this contraction could be made slightly cheaper using Voigt
|
||||
//notation, but repeated entries are summed for simplicity.
|
||||
// compute contraction of 4*sym(grad(u))sym(grad(v)) term.
|
||||
// this contraction could be made slightly cheaper using Voigt
|
||||
// notation, but repeated entries are summed for simplicity.
|
||||
real_t contraction = 0.;
|
||||
//not sure how to combine cases
|
||||
// not sure how to combine cases
|
||||
if (isComponent)
|
||||
{
|
||||
for (int a = 0; a < d; a++)
|
||||
@@ -276,7 +276,7 @@ void ElasticityAssembleDiagonalPA_(const int nDofs,
|
||||
const CoefficientVector &mu, const GeometricFactors &geom,
|
||||
const DofToQuad &maps, QuadratureFunction &QVec, Vector &diag)
|
||||
{
|
||||
//Assuming all elements are the same
|
||||
// Assuming all elements are the same
|
||||
const auto &ir = QVec.GetIntRule(0);
|
||||
static constexpr int d = dim;
|
||||
const int numPoints = ir.GetNPoints();
|
||||
@@ -299,9 +299,9 @@ void ElasticityAssembleDiagonalPA_(const int nDofs,
|
||||
{
|
||||
for (int q = 0; q < d; q++)
|
||||
{
|
||||
//compute contraction of 4*sym(grad(u))sym(grad(v)) term.
|
||||
//this contraction could be made slightly cheaper using Voigt
|
||||
//notation, but repeated entries are summed for simplicity.
|
||||
// compute contraction of 4*sym(grad(u))sym(grad(v)) term.
|
||||
// this contraction could be made slightly cheaper using Voigt
|
||||
// notation, but repeated entries are summed for simplicity.
|
||||
real_t contraction = 0.;
|
||||
for (int a = 0; a < d; a++)
|
||||
{
|
||||
@@ -321,7 +321,7 @@ void ElasticityAssembleDiagonalPA_(const int nDofs,
|
||||
}
|
||||
});
|
||||
|
||||
//Reduce quadrature function to an E-Vector
|
||||
// Reduce quadrature function to an E-Vector
|
||||
const auto QRead = Reshape(QVec.Read(), numPoints, d, d, d, numEls);
|
||||
auto diagDev = Reshape(diag.Write(), nDofs, d, numEls);
|
||||
const auto G = Reshape(maps.G.Read(), numPoints, d, nDofs);
|
||||
@@ -348,7 +348,7 @@ void ElasticityAssembleDiagonalPA_(const int nDofs,
|
||||
});
|
||||
}
|
||||
|
||||
//Templated implementation of ElasticityAssembleEA.
|
||||
// Templated implementation of ElasticityAssembleEA.
|
||||
template<int dim>
|
||||
void ElasticityAssembleEA_(const int i_block,
|
||||
const int j_block,
|
||||
@@ -360,7 +360,7 @@ void ElasticityAssembleEA_(const int i_block,
|
||||
const DofToQuad &maps,
|
||||
Vector &emat)
|
||||
{
|
||||
//Assuming all elements are the same
|
||||
// Assuming all elements are the same
|
||||
static constexpr int d = dim;
|
||||
const int numPoints = ir.GetNPoints();
|
||||
const int numEls = lambda.Size()/numPoints;
|
||||
@@ -386,7 +386,7 @@ void ElasticityAssembleEA_(const int i_block,
|
||||
{
|
||||
for (int m = 0; m < d; m++)
|
||||
{
|
||||
//compute contraction of 4*sym(grad(u))sym(grad(v)) term.
|
||||
// compute contraction of 4*sym(grad(u))sym(grad(v)) term.
|
||||
real_t contraction = 0.;
|
||||
for (int a = 0; a < d; a++)
|
||||
{
|
||||
|
||||
+48
-48
@@ -101,7 +101,7 @@ void MomentFittingIntRules::InitVolume(int order, Coefficient& levelset,
|
||||
}
|
||||
}
|
||||
|
||||
// assamble the matrix
|
||||
// assemble the matrix
|
||||
DenseMatrix Mat(nBasisVolume, ir.GetNPoints());
|
||||
for (int ip = 0; ip < ir.GetNPoints(); ip++)
|
||||
{
|
||||
@@ -118,7 +118,7 @@ void MomentFittingIntRules::InitVolume(int order, Coefficient& levelset,
|
||||
Mat.SetCol(ip, shape);
|
||||
}
|
||||
|
||||
// compute the svd for the matrix
|
||||
// compute the SVD for the matrix
|
||||
VolumeSVD = new DenseMatrixSVD(Mat, 'A', 'A');
|
||||
VolumeSVD->Eval(Mat);
|
||||
}
|
||||
@@ -220,8 +220,8 @@ void MomentFittingIntRules::ComputeSurfaceWeights1D(ElementTransformation& Tr)
|
||||
{
|
||||
IntegrationPoint ip2;
|
||||
ip2.x = .5;
|
||||
while (LvlSet->Eval(Tr, ip2) > 1e-12
|
||||
|| LvlSet->Eval(Tr, ip2) < -1e-12)
|
||||
while (LvlSet->Eval(Tr, ip2) > tol_1
|
||||
|| LvlSet->Eval(Tr, ip2) < -tol_1)
|
||||
{
|
||||
if (LvlSet->Eval(Tr, ip0) * LvlSet->Eval(Tr, ip2) < 0.)
|
||||
{
|
||||
@@ -237,12 +237,12 @@ void MomentFittingIntRules::ComputeSurfaceWeights1D(ElementTransformation& Tr)
|
||||
intp.x = ip2.x;
|
||||
intp.weight = 1. / Tr.Weight();
|
||||
}
|
||||
else if (LvlSet->Eval(Tr, ip0) > 0. && LvlSet->Eval(Tr, ip1) <= 1e-12)
|
||||
else if (LvlSet->Eval(Tr, ip0) > 0. && LvlSet->Eval(Tr, ip1) <= tol_1)
|
||||
{
|
||||
intp.x = 1.;
|
||||
intp.weight = 1. / Tr.Weight();
|
||||
}
|
||||
else if (LvlSet->Eval(Tr, ip1) > 0. && LvlSet->Eval(Tr, ip0) <= 1e-12)
|
||||
else if (LvlSet->Eval(Tr, ip1) > 0. && LvlSet->Eval(Tr, ip0) <= tol_1)
|
||||
{
|
||||
intp.x = 0.;
|
||||
intp.weight = 1. / Tr.Weight();
|
||||
@@ -290,8 +290,8 @@ void MomentFittingIntRules::ComputeVolumeWeights1D(ElementTransformation& Tr,
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (LvlSet->Eval(Tr, ip0) <= -1e-12
|
||||
|| LvlSet->Eval(Tr, ip1) <= -1e-12)
|
||||
else if (LvlSet->Eval(Tr, ip0) <= -tol_1
|
||||
|| LvlSet->Eval(Tr, ip1) <= -tol_1)
|
||||
{
|
||||
for (int ip = 0; ip < ir.GetNPoints(); ip++)
|
||||
{
|
||||
@@ -356,24 +356,24 @@ void MomentFittingIntRules::ComputeSurfaceWeights2D(ElementTransformation& Tr)
|
||||
IntegrationPoint ipB;
|
||||
Trafo.TransformBack(pointB, ipB);
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipB) < -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipB) < -tol_1)
|
||||
{
|
||||
interior = false;
|
||||
}
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) > -1e-12
|
||||
&& LvlSet->Eval(Trafo, ipB) > -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) > -tol_1
|
||||
&& LvlSet->Eval(Trafo, ipB) > -tol_1)
|
||||
{
|
||||
layout = Layout::inside;
|
||||
}
|
||||
else if (LvlSet->Eval(Trafo, ipA) > 1e-15
|
||||
else if (LvlSet->Eval(Trafo, ipA) > tol_2
|
||||
&& LvlSet->Eval(Trafo, ipB) <= 0.)
|
||||
{
|
||||
layout = Layout::intersected;
|
||||
}
|
||||
else if (LvlSet->Eval(Trafo, ipA) <= 0.
|
||||
&& LvlSet->Eval(Trafo, ipB) > 1e-15)
|
||||
&& LvlSet->Eval(Trafo, ipB) > tol_2)
|
||||
{
|
||||
layout = Layout::intersected;
|
||||
Vector temp(pointA.Size());
|
||||
@@ -399,10 +399,10 @@ void MomentFittingIntRules::ComputeSurfaceWeights2D(ElementTransformation& Tr)
|
||||
IntegrationPoint ip;
|
||||
Trafo.TransformBack(mid, ip);
|
||||
|
||||
while (LvlSet->Eval(Trafo, ip) > 1e-12
|
||||
|| LvlSet->Eval(Trafo, ip) < -1e-12)
|
||||
while (LvlSet->Eval(Trafo, ip) > tol_1
|
||||
|| LvlSet->Eval(Trafo, ip) < -tol_1)
|
||||
{
|
||||
if (LvlSet->Eval(Trafo, ip) > 1e-12)
|
||||
if (LvlSet->Eval(Trafo, ip) > tol_1)
|
||||
{
|
||||
pointC = mid;
|
||||
}
|
||||
@@ -539,7 +539,7 @@ void MomentFittingIntRules::ComputeSurfaceWeights2D(ElementTransformation& Tr)
|
||||
temp2 = 0.;
|
||||
for (int i = 0; i < nBasis; i++)
|
||||
{
|
||||
if (SVD.Singularvalue(i) > 1e-12)
|
||||
if (SVD.Singularvalue(i) > tol_1)
|
||||
{
|
||||
temp2(i) = temp(i) / SVD.Singularvalue(i);
|
||||
}
|
||||
@@ -606,24 +606,24 @@ void MomentFittingIntRules::ComputeVolumeWeights2D(ElementTransformation& Tr,
|
||||
IntegrationPoint ipB;
|
||||
Trafo.TransformBack(pointB, ipB);
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipB) < -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipB) < -tol_1)
|
||||
{
|
||||
interior = false;
|
||||
}
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) > -1e-12
|
||||
&& LvlSet->Eval(Trafo, ipB) > -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) > -tol_1
|
||||
&& LvlSet->Eval(Trafo, ipB) > -tol_1)
|
||||
{
|
||||
layout = Layout::inside;
|
||||
}
|
||||
else if (LvlSet->Eval(Trafo, ipA) > 1e-15
|
||||
else if (LvlSet->Eval(Trafo, ipA) > tol_2
|
||||
&& LvlSet->Eval(Trafo, ipB) <= 0.)
|
||||
{
|
||||
layout = Layout::intersected;
|
||||
}
|
||||
else if (LvlSet->Eval(Trafo, ipA) <= 0.
|
||||
&& LvlSet->Eval(Trafo, ipB) > 1e-15)
|
||||
&& LvlSet->Eval(Trafo, ipB) > tol_2)
|
||||
{
|
||||
layout = Layout::intersected;
|
||||
Vector temp(pointA.Size());
|
||||
@@ -648,10 +648,10 @@ void MomentFittingIntRules::ComputeVolumeWeights2D(ElementTransformation& Tr,
|
||||
IntegrationPoint ip;
|
||||
Trafo.TransformBack(mid, ip);
|
||||
|
||||
while (LvlSet->Eval(Trafo, ip) > 1e-12
|
||||
|| LvlSet->Eval(Trafo, ip) < -1e-12)
|
||||
while (LvlSet->Eval(Trafo, ip) > tol_1
|
||||
|| LvlSet->Eval(Trafo, ip) < -tol_1)
|
||||
{
|
||||
if (LvlSet->Eval(Trafo, ip) > 1e-12)
|
||||
if (LvlSet->Eval(Trafo, ip) > tol_1)
|
||||
{
|
||||
pointC = mid;
|
||||
}
|
||||
@@ -786,7 +786,7 @@ void MomentFittingIntRules::ComputeVolumeWeights2D(ElementTransformation& Tr,
|
||||
VolumeSVD->LeftSingularvectors().MultTranspose(RHS, temp);
|
||||
for (int i = 0; i < nBasisVolume; i++)
|
||||
{
|
||||
if (VolumeSVD->Singularvalue(i) > 1e-12)
|
||||
if (VolumeSVD->Singularvalue(i) > tol_1)
|
||||
{
|
||||
temp2(i) = temp(i) / VolumeSVD->Singularvalue(i);
|
||||
}
|
||||
@@ -865,18 +865,18 @@ void MomentFittingIntRules::ComputeSurfaceWeights3D(ElementTransformation& Tr)
|
||||
IntegrationPoint ipD;
|
||||
Trafo.TransformBack(pointD, ipD);
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipB) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipC) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipD) < -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipB) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipC) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipD) < -tol_1)
|
||||
{
|
||||
interior = false;
|
||||
}
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) > -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipB) > -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipC) > -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipD) > -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) > -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipB) > -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipC) > -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipD) > -tol_1)
|
||||
{
|
||||
element_int = true;
|
||||
}
|
||||
@@ -978,7 +978,7 @@ void MomentFittingIntRules::ComputeSurfaceWeights3D(ElementTransformation& Tr)
|
||||
temp2 = 0.;
|
||||
for (int i = 0; i < nBasis; i++)
|
||||
{
|
||||
if (SVD.Singularvalue(i) > 1e-12)
|
||||
if (SVD.Singularvalue(i) > tol_1)
|
||||
{
|
||||
temp2(i) = temp(i) / SVD.Singularvalue(i);
|
||||
}
|
||||
@@ -1047,18 +1047,18 @@ void MomentFittingIntRules::ComputeVolumeWeights3D(ElementTransformation& Tr,
|
||||
IntegrationPoint ipD;
|
||||
Trafo.TransformBack(pointD, ipD);
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipB) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipC) < -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipD) < -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipB) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipC) < -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipD) < -tol_1)
|
||||
{
|
||||
interior = false;
|
||||
}
|
||||
|
||||
if (LvlSet->Eval(Trafo, ipA) > -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipB) > -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipC) > -1e-12
|
||||
|| LvlSet->Eval(Trafo, ipD) > -1e-12)
|
||||
if (LvlSet->Eval(Trafo, ipA) > -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipB) > -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipC) > -tol_1
|
||||
|| LvlSet->Eval(Trafo, ipD) > -tol_1)
|
||||
{
|
||||
element_int = true;
|
||||
}
|
||||
@@ -1159,7 +1159,7 @@ void MomentFittingIntRules::ComputeVolumeWeights3D(ElementTransformation& Tr,
|
||||
VolumeSVD->LeftSingularvectors().MultTranspose(RHS, temp);
|
||||
temp2 = 0.;
|
||||
for (int i = 0; i < nBasisVolume; i++)
|
||||
if (VolumeSVD->Singularvalue(i) > 1e-12)
|
||||
if (VolumeSVD->Singularvalue(i) > tol_1)
|
||||
{
|
||||
temp2(i) = temp(i) / VolumeSVD->Singularvalue(i);
|
||||
}
|
||||
@@ -1239,7 +1239,7 @@ void MomentFittingIntRules::OrthoBasis2D(const IntegrationPoint& ip,
|
||||
|
||||
shape.SetSize(nBasis, 2);
|
||||
|
||||
// evaluate basis inthe point
|
||||
// evaluate basis in the point
|
||||
DenseMatrix preshape(nBasis, 2);
|
||||
DivFreeBasis2D(ip, shape);
|
||||
|
||||
@@ -1597,6 +1597,6 @@ void MomentFittingIntRules::GetSurfaceWeights(ElementTransformation& Tr,
|
||||
}
|
||||
}
|
||||
|
||||
#endif //MFEM_USE_LAPACK
|
||||
#endif // MFEM_USE_LAPACK
|
||||
|
||||
}
|
||||
|
||||
@@ -36,6 +36,17 @@ protected:
|
||||
/// Space order for the LS projection.
|
||||
int lsOrder;
|
||||
|
||||
/// @name Tolerances used for point comparisons
|
||||
///@{
|
||||
#ifdef MFEM_USE_DOUBLE
|
||||
static constexpr real_t tol_1 = 1e-12;
|
||||
static constexpr real_t tol_2 = 1e-15;
|
||||
#elif defined(MFEM_USE_SINGLE)
|
||||
static constexpr real_t tol_1 = 1e-5;
|
||||
static constexpr real_t tol_2 = 1e-7;
|
||||
#endif
|
||||
///@}
|
||||
|
||||
/** @brief Constructor to set up the generated cut IntegrationRules.
|
||||
|
||||
@param [in] order Order of the constructed IntegrationRule.
|
||||
|
||||
@@ -123,6 +123,35 @@ void DomainLFGradIntegrator::AssembleDeltaElementVect(
|
||||
dshape.Mult(Qvec, elvect);
|
||||
}
|
||||
|
||||
void DomainLFLaplaceIntegrator::AssembleRHSElementVect(const FiniteElement &el,
|
||||
ElementTransformation &Tr,
|
||||
Vector &elvect)
|
||||
{
|
||||
int dof = el.GetDof();
|
||||
|
||||
laplace.SetSize(dof); // vector of size dof
|
||||
elvect.SetSize(dof);
|
||||
elvect = 0.0;
|
||||
|
||||
const IntegrationRule *ir = NULL;//IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
ir = &IntRules.Get(el.GetGeomType(), oa * el.GetOrder() + ob + 4);
|
||||
}
|
||||
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
|
||||
Tr.SetIntPoint (&ip);
|
||||
real_t val = Tr.Weight() * Q.Eval(Tr, ip) * alpha;
|
||||
|
||||
el.CalcPhysLaplacian(Tr, laplace);
|
||||
|
||||
add(elvect, ip.weight * val, laplace, elvect);
|
||||
}
|
||||
}
|
||||
|
||||
void BoundaryLFIntegrator::AssembleRHSElementVect(
|
||||
const FiniteElement &el, ElementTransformation &Tr, Vector &elvect)
|
||||
{
|
||||
|
||||
@@ -174,6 +174,29 @@ public:
|
||||
using LinearFormIntegrator::AssembleRHSElementVect;
|
||||
};
|
||||
|
||||
/// Class for domain integrator $ L(v) := (f, \Delta v) $
|
||||
class DomainLFLaplaceIntegrator : public LinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
Vector laplace;
|
||||
Coefficient &Q;
|
||||
real_t alpha;
|
||||
int oa, ob;
|
||||
public:
|
||||
/// Constructs the domain integrator $ (Q, \nabla v) $
|
||||
DomainLFLaplaceIntegrator(Coefficient &QF, real_t alp = 1.0, int a = 2,
|
||||
int b = 0)
|
||||
: Q(QF), oa(a), ob(b) { alpha = alp; }
|
||||
|
||||
/** Given a particular Finite Element and a transformation (Tr)
|
||||
computes the element right hand side element vector, elvect. */
|
||||
virtual void AssembleRHSElementVect(const FiniteElement &el,
|
||||
ElementTransformation &Tr,
|
||||
Vector &elvect);
|
||||
|
||||
using LinearFormIntegrator::AssembleRHSElementVect;
|
||||
};
|
||||
|
||||
|
||||
/// Class for boundary integration $ L(v) := (g, v) $
|
||||
class BoundaryLFIntegrator : public LinearFormIntegrator
|
||||
|
||||
+1
-1
@@ -291,7 +291,7 @@ void BatchedLOR_AMS::FormCoordinateVectors(const Vector &X_vert)
|
||||
const auto ltdof_ldof = HypreRead(R->GetMemoryJ());
|
||||
|
||||
// Go from E-vector format directly to T-vector format
|
||||
MFEM_HYPRE_FORALL(i, ntdofs,
|
||||
mfem::hypre_forall(ntdofs, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
const int j = d_offsets[ltdof_ldof[i]];
|
||||
for (int c = 0; c < sdim; ++c)
|
||||
|
||||
+15
-15
@@ -269,13 +269,13 @@ void BatchedLOR_H1::Assemble3D()
|
||||
real_t vx[8], vy[8], vz[8];
|
||||
LORVertexCoordinates3D<ORDER>(X, iel_ho, kx, ky, kz, vx, vy, vz);
|
||||
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int iqz=0; iqz<2; ++iqz)
|
||||
{
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int iqy=0; iqy<2; ++iqy)
|
||||
{
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int iqx=0; iqx<2; ++iqx)
|
||||
{
|
||||
const real_t x = iqx;
|
||||
@@ -307,21 +307,21 @@ void BatchedLOR_H1::Assemble3D()
|
||||
}
|
||||
}
|
||||
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int iqx=0; iqx<2; ++iqx)
|
||||
{
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int jz=0; jz<2; ++jz)
|
||||
{
|
||||
// Note loop starts at iz=jz here, taking advantage of
|
||||
// symmetries.
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int iz=jz; iz<2; ++iz)
|
||||
{
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int iqy=0; iqy<2; ++iqy)
|
||||
{
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int iqz=0; iqz<2; ++iqz)
|
||||
{
|
||||
const real_t mq = const_mq ? MQ(0,0,0,0) : MQ(kx+iqx, ky+iqy, kz+iqz, iel_ho);
|
||||
@@ -356,10 +356,10 @@ void BatchedLOR_H1::Assemble3D()
|
||||
real_t wdetJ = Q(6,iqz,iqy,iqx);
|
||||
mass_A(iqy,iz,jz,iqx) += mq*wdetJ*biz*bjz;
|
||||
}
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int jy=0; jy<2; ++jy)
|
||||
{
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int iy=0; iy<2; ++iy)
|
||||
{
|
||||
const real_t biy = (iy == iqy) ? 1.0 : 0.0;
|
||||
@@ -382,16 +382,16 @@ void BatchedLOR_H1::Assemble3D()
|
||||
}
|
||||
}
|
||||
}
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int jy=0; jy<2; ++jy)
|
||||
{
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int jx=0; jx<2; ++jx)
|
||||
{
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int iy=0; iy<2; ++iy)
|
||||
{
|
||||
//MFEM_UNROLL(2)
|
||||
// MFEM_UNROLL(2)
|
||||
for (int ix=0; ix<2; ++ix)
|
||||
{
|
||||
const real_t bix = (ix == iqx) ? 1.0 : 0.0;
|
||||
@@ -431,7 +431,7 @@ void BatchedLOR_H1::Assemble3D()
|
||||
// Assemble the local matrix into the macro-element sparse matrix
|
||||
// in a format similar to coordinate format. The (I,J) arrays
|
||||
// are implicit (not stored explicitly).
|
||||
//MFEM_UNROLL(8)
|
||||
// MFEM_UNROLL(8)
|
||||
for (int ii_loc=0; ii_loc<nv; ++ii_loc)
|
||||
{
|
||||
const int ix = ii_loc%2;
|
||||
|
||||
@@ -0,0 +1,828 @@
|
||||
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "normal_deriv_restriction.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "pgridfunc.hpp"
|
||||
#include "fe/face_map_utils.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Compute the face index to volume index map "face_to_vol" in 2D
|
||||
static void NormalDerivativeSetupFaceIndexMap2D(
|
||||
int nf, int d, const Array<int>& face_to_elem, Array<int>& face_to_vol)
|
||||
{
|
||||
const auto f2e = Reshape(face_to_elem.HostRead(), 2, 2, nf);
|
||||
auto f2v = Reshape(face_to_vol.HostWrite(), d, 2, nf);
|
||||
|
||||
for (int f = 0; f < nf; ++f)
|
||||
{
|
||||
const int fid0 = f2e(0, 1, f);
|
||||
const int fid1 = f2e(1, 1, f);
|
||||
for (int side = 0; side < 2; ++side)
|
||||
{
|
||||
const int el = f2e(side, 0, f);
|
||||
|
||||
if (el < 0)
|
||||
{
|
||||
for (int p = 0; p < d; ++p)
|
||||
{
|
||||
f2v(p, side, f) = -1;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int p = 0; p < d; ++p)
|
||||
{
|
||||
int i, j;
|
||||
internal::FaceIdxToVolIdx2D(p, d, fid0, fid1, side, i, j);
|
||||
|
||||
f2v(p, side, f) = i + d * j;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/// Compute the face index to volume index map "face_to_vol" in 3D
|
||||
static void NormalDerivativeSetupFaceIndexMap3D(
|
||||
int nf, int d, const Array<int>& face_to_elem, Array<int>& face_to_vol)
|
||||
{
|
||||
const auto f2e = Reshape(face_to_elem.HostRead(), 2, 3, nf);
|
||||
auto f2v = Reshape(face_to_vol.HostWrite(), d*d, 2, nf);
|
||||
|
||||
for (int f = 0; f < nf; ++f)
|
||||
{
|
||||
const int fid0 = f2e(0, 1, f);
|
||||
const int fid1 = f2e(1, 1, f);
|
||||
for (int side = 0; side < 2; ++side)
|
||||
{
|
||||
const int el = f2e(side, 0, f);
|
||||
const int orientation = f2e(side, 2, f);
|
||||
|
||||
if (el < 0)
|
||||
{
|
||||
for (int p = 0; p < d*d; ++p)
|
||||
{
|
||||
f2v(p, side, f) = -1;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int p = 0; p < d*d; ++p)
|
||||
{
|
||||
int i, j, k; // 3D lexicographic index of quad point p
|
||||
internal::FaceIdxToVolIdx3D(p, d, fid0, fid1, side, orientation, i, j, k);
|
||||
|
||||
f2v(p, side, f) = i + d * (j + d * k);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
L2NormalDerivativeFaceRestriction::L2NormalDerivativeFaceRestriction(
|
||||
const FiniteElementSpace &fes_,
|
||||
const ElementDofOrdering f_ordering,
|
||||
const FaceType face_type_)
|
||||
: fes(fes_),
|
||||
face_type(face_type_),
|
||||
dim(fes.GetMesh()->Dimension()),
|
||||
nf(fes.GetNFbyType(face_type)),
|
||||
ne(fes.GetNE())
|
||||
{
|
||||
MFEM_VERIFY(f_ordering == ElementDofOrdering::LEXICOGRAPHIC,
|
||||
"Non-lexicographic ordering not currently supported in "
|
||||
"L2NormalDerivativeFaceRestriction.");
|
||||
|
||||
Mesh &mesh = *fes.GetMesh();
|
||||
|
||||
const FiniteElement &fe = *fes.GetFE(0);
|
||||
const int d = fe.GetDofToQuad(fe.GetNodes(), DofToQuad::TENSOR).ndof;
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
// (el0, el1, fid0, fid1)
|
||||
face_to_elem.SetSize(nf * 4);
|
||||
face_to_vol.SetSize(2 * nf * d);
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
// (el0, el1, fid0, fid1, or0, or1)
|
||||
face_to_elem.SetSize(nf * 6);
|
||||
face_to_vol.SetSize(2 * nf * d * d);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Unsupported dimension.");
|
||||
}
|
||||
auto f2e = Reshape(face_to_elem.HostWrite(), 2, (dim == 2) ? 2 : 3, nf);
|
||||
|
||||
// Populate the face_to_elem array. The elem_indicator will be used to count
|
||||
// the number of elements that are adjacent to faces of the given type.
|
||||
Array<int> elem_indicator(ne);
|
||||
elem_indicator = 0;
|
||||
|
||||
int f_ind = 0;
|
||||
for (int f = 0; f < fes.GetNF(); ++f)
|
||||
{
|
||||
Mesh::FaceInformation face = mesh.GetFaceInformation(f);
|
||||
|
||||
if (face.IsOfFaceType(face_type))
|
||||
{
|
||||
f2e(0, 0, f_ind) = face.element[0].index;
|
||||
f2e(0, 1, f_ind) = face.element[0].local_face_id;
|
||||
if (dim == 3)
|
||||
{
|
||||
f2e(0, 2, f_ind) = face.element[0].orientation;
|
||||
}
|
||||
|
||||
elem_indicator[face.element[0].index] = 1;
|
||||
|
||||
if (face_type == FaceType::Interior)
|
||||
{
|
||||
const int el_idx_1 = face.element[1].index;
|
||||
if (face.IsShared())
|
||||
{
|
||||
// Indicate shared face by index >= ne
|
||||
f2e(1, 0, f_ind) = ne + el_idx_1;
|
||||
}
|
||||
else
|
||||
{
|
||||
// Face is not shared
|
||||
f2e(1, 0, f_ind) = el_idx_1;
|
||||
elem_indicator[el_idx_1] = 1;
|
||||
}
|
||||
f2e(1, 1, f_ind) = face.element[1].local_face_id;
|
||||
|
||||
if (dim == 3)
|
||||
{
|
||||
f2e(1, 2, f_ind) = face.element[1].orientation;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
f2e(1, 0, f_ind) = -1;
|
||||
f2e(1, 1, f_ind) = -1;
|
||||
|
||||
if (dim == 3)
|
||||
{
|
||||
f2e(1, 2, f_ind) = -1;
|
||||
}
|
||||
}
|
||||
|
||||
f_ind++;
|
||||
}
|
||||
}
|
||||
|
||||
// evaluate face to vol map
|
||||
if (dim == 2)
|
||||
{
|
||||
NormalDerivativeSetupFaceIndexMap2D(nf, d, face_to_elem, face_to_vol);
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
NormalDerivativeSetupFaceIndexMap3D(nf, d, face_to_elem, face_to_vol);
|
||||
}
|
||||
|
||||
// Number of elements adjacent to faces of face_type
|
||||
ne_type = elem_indicator.Sum();
|
||||
|
||||
// In 2D: (el, f0,f1,f2,f3, s0,s1,s2,s3)
|
||||
// In 3D: (el, f0,f1,f2,f3,f4,f5, s0,s1,s2,s3,s4,s5)
|
||||
const int elem_data_sz = (dim == 2) ? 9 : 13;
|
||||
|
||||
elem_to_face.SetSize(elem_data_sz * ne_type);
|
||||
elem_to_face = -1;
|
||||
|
||||
auto e2f = Reshape(elem_to_face.HostWrite(), elem_data_sz, ne_type);
|
||||
elem_indicator.PartialSum();
|
||||
|
||||
const int nsides = (face_type == FaceType::Interior) ? 2 : 1;
|
||||
const int side_begin = (dim == 2) ? 5 : 7;
|
||||
for (int f = 0; f < nf; ++f)
|
||||
{
|
||||
for (int side = 0; side < nsides; ++side)
|
||||
{
|
||||
const int el = f2e(side, 0, f);
|
||||
// Skip shared faces
|
||||
if (el < ne)
|
||||
{
|
||||
const int face_id = f2e(side, 1, f);
|
||||
|
||||
const int e = elem_indicator[el] - 1;
|
||||
e2f(0, e) = el;
|
||||
e2f(1 + face_id, e) = f;
|
||||
e2f(side_begin + face_id, e) = side;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void L2NormalDerivativeFaceRestriction::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (nf == 0) { return; }
|
||||
switch (dim)
|
||||
{
|
||||
case 2:
|
||||
{
|
||||
const int d1d = fes.GetElementOrder(0) + 1;
|
||||
switch (d1d)
|
||||
{
|
||||
case 1: Mult2D<1>(x, y); break;
|
||||
case 2: Mult2D<2>(x, y); break;
|
||||
case 3: Mult2D<3>(x, y); break;
|
||||
case 4: Mult2D<4>(x, y); break;
|
||||
case 5: Mult2D<5>(x, y); break;
|
||||
case 6: Mult2D<6>(x, y); break;
|
||||
case 7: Mult2D<7>(x, y); break;
|
||||
case 8: Mult2D<8>(x, y); break;
|
||||
default: Mult2D(x, y); break;
|
||||
}
|
||||
}
|
||||
break;
|
||||
case 3:
|
||||
{
|
||||
const int d1d = fes.GetElementOrder(0) + 1;
|
||||
switch (d1d)
|
||||
{
|
||||
case 1: Mult3D<1>(x, y); break;
|
||||
case 2: Mult3D<2>(x, y); break;
|
||||
case 3: Mult3D<3>(x, y); break;
|
||||
case 4: Mult3D<4>(x, y); break;
|
||||
case 5: Mult3D<5>(x, y); break;
|
||||
case 6: Mult3D<6>(x, y); break;
|
||||
case 7: Mult3D<7>(x, y); break;
|
||||
case 8: Mult3D<8>(x, y); break;
|
||||
default: Mult3D(x, y); break; // fallback
|
||||
}
|
||||
break;
|
||||
}
|
||||
default: MFEM_ABORT("Dimension not supported."); break;
|
||||
}
|
||||
}
|
||||
|
||||
void L2NormalDerivativeFaceRestriction::AddMultTranspose(
|
||||
const Vector &x, Vector &y, const real_t a) const
|
||||
{
|
||||
if (nf == 0) { return; }
|
||||
switch (dim)
|
||||
{
|
||||
case 2:
|
||||
{
|
||||
const int d1d = fes.GetElementOrder(0) + 1;
|
||||
switch (d1d)
|
||||
{
|
||||
case 1: AddMultTranspose2D<1>(x, y, a); break;
|
||||
case 2: AddMultTranspose2D<2>(x, y, a); break;
|
||||
case 3: AddMultTranspose2D<3>(x, y, a); break;
|
||||
case 4: AddMultTranspose2D<4>(x, y, a); break;
|
||||
case 5: AddMultTranspose2D<5>(x, y, a); break;
|
||||
case 6: AddMultTranspose2D<6>(x, y, a); break;
|
||||
case 7: AddMultTranspose2D<7>(x, y, a); break;
|
||||
case 8: AddMultTranspose2D<8>(x, y, a); break;
|
||||
default: AddMultTranspose2D(x, y, a); break;
|
||||
}
|
||||
}
|
||||
break;
|
||||
case 3:
|
||||
{
|
||||
const int d1d = fes.GetElementOrder(0) + 1;
|
||||
switch (d1d)
|
||||
{
|
||||
case 1: AddMultTranspose3D<1>(x, y, a); break;
|
||||
case 2: AddMultTranspose3D<2>(x, y, a); break;
|
||||
case 3: AddMultTranspose3D<3>(x, y, a); break;
|
||||
case 4: AddMultTranspose3D<4>(x, y, a); break;
|
||||
case 5: AddMultTranspose3D<5>(x, y, a); break;
|
||||
case 6: AddMultTranspose3D<6>(x, y, a); break;
|
||||
case 7: AddMultTranspose3D<7>(x, y, a); break;
|
||||
case 8: AddMultTranspose3D<8>(x, y, a); break;
|
||||
default: AddMultTranspose3D(x, y, a); break; // fallback
|
||||
}
|
||||
break;
|
||||
}
|
||||
default: MFEM_ABORT("Not yet implemented"); break;
|
||||
}
|
||||
}
|
||||
|
||||
template <int T_D1D>
|
||||
void L2NormalDerivativeFaceRestriction::Mult2D(const Vector &x, Vector &y) const
|
||||
{
|
||||
const int vd = fes.GetVDim();
|
||||
const bool t = fes.GetOrdering() == Ordering::byVDIM;
|
||||
const int num_elem = ne;
|
||||
|
||||
const FiniteElement &fe = *fes.GetFE(0);
|
||||
const DofToQuad &maps = fe.GetDofToQuad(fe.GetNodes(), DofToQuad::TENSOR);
|
||||
|
||||
const int q = maps.nqpt;
|
||||
const int d = maps.ndof;
|
||||
|
||||
Vector face_nbr_data = GetLVectorFaceNbrData(fes, x, face_type);
|
||||
const int ne_shared = face_nbr_data.Size() / d / d / vd;
|
||||
|
||||
MFEM_VERIFY(q == d, "");
|
||||
MFEM_VERIFY(T_D1D == d || T_D1D == 0, "");
|
||||
|
||||
// derivative of 1D basis function
|
||||
const auto G_ = Reshape(maps.G.Read(), q, d);
|
||||
// (el0, el1, fid0, fid1)
|
||||
const auto f2e = Reshape(face_to_elem.Read(), 2, 2, nf);
|
||||
|
||||
const auto f2v = Reshape(face_to_vol.Read(), q, 2, nf);
|
||||
|
||||
// if byvdim, d_x has shape (vdim, nddof, nddof, ne)
|
||||
// otherwise, d_x has shape (nddof, nddof, ne, vdim)
|
||||
const auto d_x = Reshape(x.Read(), t?vd:d, d, t?d:ne, t?ne:vd);
|
||||
const auto d_x_shared = Reshape(face_nbr_data.Read(),
|
||||
t?vd:d, d, t?d:ne_shared, t?ne_shared:vd);
|
||||
auto d_y = Reshape(y.Write(), q, vd, 2, nf);
|
||||
|
||||
mfem::forall_2D(nf, 2, q, [=] MFEM_HOST_DEVICE (int f) -> void
|
||||
{
|
||||
constexpr int MD = (T_D1D) ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
|
||||
MFEM_SHARED real_t G_s[MD*MD];
|
||||
DeviceMatrix G(G_s, q, d);
|
||||
|
||||
MFEM_SHARED int E[2];
|
||||
MFEM_SHARED int FID[2];
|
||||
MFEM_SHARED int F2V[2][MD];
|
||||
|
||||
if (MFEM_THREAD_ID(x) == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(j, y, d)
|
||||
{
|
||||
for (int i = 0; i < q; ++i)
|
||||
{
|
||||
G(i, j) = G_(i, j);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
MFEM_FOREACH_THREAD(side, x, 2)
|
||||
{
|
||||
if (MFEM_THREAD_ID(y) == 0)
|
||||
{
|
||||
E[side] = f2e(side, 0, f);
|
||||
FID[side] = f2e(side, 1, f);
|
||||
}
|
||||
|
||||
MFEM_FOREACH_THREAD(j, y, d)
|
||||
{
|
||||
F2V[side][j] = f2v(j, side, f);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(side, x, 2)
|
||||
{
|
||||
const int el = E[side];
|
||||
const bool shared = (el >= num_elem);
|
||||
const auto &d_x_e = shared ? d_x_shared : d_x;
|
||||
const int el_idx = shared ? el - num_elem : el;
|
||||
|
||||
const int face_id = FID[side];
|
||||
|
||||
MFEM_FOREACH_THREAD(p, y, q)
|
||||
{
|
||||
if (el < 0)
|
||||
{
|
||||
for (int c = 0; c < vd; ++c)
|
||||
{
|
||||
d_y(p, c, side, f) = 0.0;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
const int ij = F2V[side][p];
|
||||
const int i = ij % q;
|
||||
const int j = ij / q;
|
||||
|
||||
for (int c=0; c < vd; ++c)
|
||||
{
|
||||
real_t grad_n = 0;
|
||||
for (int kk=0; kk < d; ++kk)
|
||||
{
|
||||
const int k = (face_id == 0 || face_id == 2) ? i : kk;
|
||||
const int l = (face_id == 0 || face_id == 2) ? kk : j;
|
||||
const real_t g = (face_id == 0 || face_id == 2) ? G(j,l) : G(i,k);
|
||||
grad_n += g * d_x_e(t?c:k, t?k:l, t?l:el_idx, t?el_idx:c);
|
||||
}
|
||||
d_y(p, c, side, f) = grad_n;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template <int T_D1D>
|
||||
void L2NormalDerivativeFaceRestriction::Mult3D(const Vector &x, Vector &y) const
|
||||
{
|
||||
const int vd = fes.GetVDim();
|
||||
const bool t = fes.GetOrdering() == Ordering::byVDIM;
|
||||
const int num_elem = ne;
|
||||
|
||||
const FiniteElement &fe = *fes.GetFE(0);
|
||||
const DofToQuad &maps = fe.GetDofToQuad(fe.GetNodes(), DofToQuad::TENSOR);
|
||||
|
||||
const int q = maps.nqpt;
|
||||
const int d = maps.ndof;
|
||||
const int q2d = q * q;
|
||||
|
||||
Vector face_nbr_data = GetLVectorFaceNbrData(fes, x, face_type);
|
||||
const int ne_shared = face_nbr_data.Size() / d / d / d / vd;
|
||||
|
||||
MFEM_VERIFY(q == d, "");
|
||||
MFEM_VERIFY(T_D1D == d || T_D1D == 0, "");
|
||||
|
||||
const auto G_ = Reshape(maps.G.Read(), q, d);
|
||||
// (el0, el1, fid0, fid1, or0, or1)
|
||||
const auto f2e = Reshape(face_to_elem.Read(), 2, 3, nf);
|
||||
const auto f2v = Reshape(face_to_vol.Read(), q2d, 2, nf);
|
||||
|
||||
// t ? (vdim, d, d, d, ne) : (d, d, d, ne, vdim)
|
||||
const auto d_x = Reshape(x.Read(), t?vd:d, d, d, t?d:ne, t?ne:vd);
|
||||
const auto d_x_shared = Reshape(face_nbr_data.Read(),
|
||||
t?vd:d, d, d, t?d:ne_shared, t?ne_shared:vd);
|
||||
auto d_y = Reshape(y.Write(), q2d, vd, 2, nf);
|
||||
|
||||
mfem::forall_2D(nf, q2d, 2, [=] MFEM_HOST_DEVICE (int f) -> void
|
||||
{
|
||||
static constexpr int MD = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
|
||||
MFEM_SHARED real_t G_s[MD*MD];
|
||||
DeviceMatrix G(G_s, d, q);
|
||||
|
||||
MFEM_SHARED int E[2];
|
||||
MFEM_SHARED int FID[2];
|
||||
MFEM_SHARED int F2V[2][MD*MD];
|
||||
|
||||
// Load G matrix into shared memory
|
||||
if (MFEM_THREAD_ID(y) == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(j, x, d*q)
|
||||
{
|
||||
const int p = j % q;
|
||||
const int k = j / q;
|
||||
G(k, p) = G_(p, k);
|
||||
}
|
||||
}
|
||||
|
||||
MFEM_FOREACH_THREAD(side, y, 2)
|
||||
{
|
||||
if (MFEM_THREAD_ID(x) == 0)
|
||||
{
|
||||
E[side] = f2e(side, 0, f);
|
||||
FID[side] = f2e(side, 1, f);
|
||||
}
|
||||
MFEM_FOREACH_THREAD(j, x, q2d)
|
||||
{
|
||||
F2V[side][j] = f2v(j, side, f);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(side, y, 2)
|
||||
{
|
||||
const int el = E[side];
|
||||
const bool shared = (el >= num_elem);
|
||||
const auto &d_x_e = shared ? d_x_shared : d_x;
|
||||
const int el_idx = shared ? el - num_elem : el;
|
||||
|
||||
const int face_id = FID[side];
|
||||
|
||||
// Is this face parallel to the x-y plane in reference coordinates?
|
||||
const bool xy_plane = (face_id == 0 || face_id == 5);
|
||||
const bool xz_plane = (face_id == 1 || face_id == 3);
|
||||
const bool yz_plane = (face_id == 2 || face_id == 4);
|
||||
|
||||
MFEM_FOREACH_THREAD(p, x, q2d)
|
||||
{
|
||||
if (el_idx < 0)
|
||||
{
|
||||
for (int c = 0; c < vd; ++c)
|
||||
{
|
||||
d_y(p, c, side, f) = 0.0;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
const int ijk = F2V[side][p];
|
||||
const int k = ijk / q2d;
|
||||
const int i = ijk % q;
|
||||
const int j = (ijk - q2d*k) / q;
|
||||
|
||||
// the fixed 1D index of the normal component of the face
|
||||
// quadrature point
|
||||
const int g_row = yz_plane ? i : xz_plane ? j : k;
|
||||
|
||||
for (int c = 0; c < vd; ++c)
|
||||
{
|
||||
real_t grad_n = 0.0;
|
||||
|
||||
for (int kk = 0; kk < d; ++kk)
|
||||
{
|
||||
// (l, m, n) 3D lexicographic index of interior points used
|
||||
// in evaluating normal derivatives
|
||||
const int l = yz_plane ? kk : i;
|
||||
const int m = xz_plane ? kk : j;
|
||||
const int n = xy_plane ? kk : k;
|
||||
|
||||
const real_t g = G(kk, g_row);
|
||||
|
||||
grad_n += g * d_x_e(t?c:l, t?l:m, t?m:n, t?n:el_idx, t?el_idx:c);
|
||||
}
|
||||
d_y(p, c, side, f) = grad_n;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template <int T_D1D>
|
||||
void L2NormalDerivativeFaceRestriction::AddMultTranspose2D(
|
||||
const Vector &y, Vector &x, const real_t a) const
|
||||
{
|
||||
const int vd = fes.GetVDim();
|
||||
const bool t = fes.GetOrdering() == Ordering::byVDIM;
|
||||
|
||||
const FiniteElement &fe = *fes.GetFE(0);
|
||||
const DofToQuad &maps = fe.GetDofToQuad(fe.GetNodes(), DofToQuad::TENSOR);
|
||||
|
||||
const int q = maps.nqpt;
|
||||
const int d = maps.ndof;
|
||||
|
||||
// derivative of 1D basis function
|
||||
auto G_ = Reshape(maps.G.Read(), q, d);
|
||||
|
||||
// entries of e2f: (el,f0,f1,f2,f3,s0,s1,s2,s3)
|
||||
auto e2f = Reshape(elem_to_face.Read(), 9, ne_type);
|
||||
|
||||
auto f2v = Reshape(face_to_vol.Read(), d, 2, nf);
|
||||
|
||||
// if byvdim, d_x has shape (vdim, nddof, nddof, ne)
|
||||
// otherwise, d_x has shape (nddof, nddof, ne, vdim)
|
||||
auto d_x = Reshape(x.ReadWrite(), t?vd:d, d, t?d:ne, t?ne:vd);
|
||||
auto d_y = Reshape(y.Read(), q, vd, 2, nf);
|
||||
|
||||
mfem::forall_2D(ne_type, d, d, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
constexpr int MD = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
|
||||
MFEM_SHARED real_t y_s[MD];
|
||||
MFEM_SHARED int pp[MD];
|
||||
MFEM_SHARED int jj;
|
||||
if (MFEM_THREAD_ID(x) == 0 && MFEM_THREAD_ID(y) == 0) { jj = 0; }
|
||||
|
||||
MFEM_SHARED real_t BG[MD*MD];
|
||||
DeviceMatrix G(BG, q, d);
|
||||
|
||||
MFEM_SHARED real_t x_s[MD*MD];
|
||||
DeviceMatrix xx(x_s, d, d);
|
||||
|
||||
MFEM_SHARED int el; // global element index
|
||||
MFEM_SHARED int faces[4];
|
||||
MFEM_SHARED int sides[4];
|
||||
|
||||
MFEM_FOREACH_THREAD(i,x,d)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(p,y,q)
|
||||
{
|
||||
G(p,i) = a * G_(p,i);
|
||||
xx(p,i) = 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
if (MFEM_THREAD_ID(y) == 0)
|
||||
{
|
||||
if (MFEM_THREAD_ID(x) == 0)
|
||||
{
|
||||
el = e2f(0, e);
|
||||
}
|
||||
|
||||
MFEM_FOREACH_THREAD(i, x, 4)
|
||||
{
|
||||
faces[i] = e2f(1 + i, e);
|
||||
sides[i] = e2f(5 + i, e);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
for (int face_id=0; face_id < 4; ++face_id)
|
||||
{
|
||||
const int f = faces[face_id];
|
||||
|
||||
if (f < 0) { continue; }
|
||||
|
||||
const int side = sides[face_id];
|
||||
|
||||
if (MFEM_THREAD_ID(y) == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(p,x,d)
|
||||
{
|
||||
y_s[p] = d_y(p, 0, side, f);
|
||||
|
||||
const int ij = f2v(p, side, f);
|
||||
const int i = ij % q;
|
||||
const int j = ij / q;
|
||||
|
||||
pp[(face_id == 0 || face_id == 2) ? i : j] = p;
|
||||
if (MFEM_THREAD_ID(x) == 0)
|
||||
{
|
||||
jj = (face_id == 0 || face_id == 2) ? j : i;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(k,x,d)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(l,y,d)
|
||||
{
|
||||
const int p = (face_id == 0 || face_id == 2) ? pp[k] : pp[l];
|
||||
const int kk = (face_id == 0 || face_id == 2) ? l : k;
|
||||
const real_t g = G(jj, kk);
|
||||
xx(k,l) += g * y_s[p];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(k,x,d)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(l,y,d)
|
||||
{
|
||||
const int c = 0;
|
||||
d_x(t?c:k, t?k:l, t?l:el, t?el:c) += xx(k,l);
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template <int T_D1D>
|
||||
void L2NormalDerivativeFaceRestriction::AddMultTranspose3D(
|
||||
const Vector &y, Vector &x, const real_t a) const
|
||||
{
|
||||
const int vd = fes.GetVDim();
|
||||
const bool t = fes.GetOrdering() == Ordering::byVDIM;
|
||||
|
||||
MFEM_VERIFY(vd == 1, "vdim > 1 not supported.");
|
||||
|
||||
const FiniteElement &fe = *fes.GetFE(0);
|
||||
const DofToQuad &maps = fe.GetDofToQuad(fe.GetNodes(), DofToQuad::TENSOR);
|
||||
|
||||
const int q = maps.nqpt;
|
||||
const int d = maps.ndof;
|
||||
const int q2d = q * q;
|
||||
|
||||
MFEM_VERIFY(q == d, "");
|
||||
MFEM_VERIFY(T_D1D == d || T_D1D == 0, "");
|
||||
|
||||
auto G_ = Reshape(maps.G.Read(), q, d);
|
||||
|
||||
// (el, f0,f1,f2,f3,f4,f5, s0,s1,s2,s3,s4,s5)
|
||||
auto e2f = Reshape(elem_to_face.Read(), 13, ne_type);
|
||||
|
||||
auto f2v = Reshape(face_to_vol.Read(), q2d, 2, nf);
|
||||
|
||||
auto d_x = Reshape(x.ReadWrite(), t?vd:d, d, d, t?d:ne, t?ne:vd);
|
||||
const auto d_y = Reshape(y.Read(), q2d, vd, 2, nf);
|
||||
|
||||
mfem::forall_2D(ne_type, q, q, [=] MFEM_HOST_DEVICE (int e) -> void
|
||||
{
|
||||
static constexpr int MD = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
|
||||
MFEM_SHARED int pp[MD][MD];
|
||||
MFEM_SHARED real_t y_s[MD*MD];
|
||||
MFEM_SHARED int jj;
|
||||
if (MFEM_THREAD_ID(x) == 0 && MFEM_THREAD_ID(y) == 0) { jj = 0; }
|
||||
|
||||
MFEM_SHARED real_t xx_s[MD*MD*MD];
|
||||
auto xx = Reshape(xx_s, d, d, d);
|
||||
|
||||
MFEM_SHARED real_t G_s[MD*MD];
|
||||
DeviceMatrix G(G_s, q, d);
|
||||
|
||||
MFEM_SHARED int el;
|
||||
MFEM_SHARED int faces[6];
|
||||
MFEM_SHARED int sides[6];
|
||||
|
||||
// Load G into shared memory
|
||||
MFEM_FOREACH_THREAD(j, x, d)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(i, y, q)
|
||||
{
|
||||
G(i, j) = a * G_(i, j);
|
||||
G(i, j) = a * G_(i, j);
|
||||
G(i, j) = a * G_(i, j);
|
||||
}
|
||||
}
|
||||
|
||||
if (MFEM_THREAD_ID(y) == 0)
|
||||
{
|
||||
if (MFEM_THREAD_ID(x) == 0)
|
||||
{
|
||||
el = e2f(0, e); // global element index
|
||||
}
|
||||
|
||||
MFEM_FOREACH_THREAD(i, x, 6)
|
||||
{
|
||||
faces[i] = e2f(1 + i, e);
|
||||
sides[i] = e2f(7 + i, e);
|
||||
}
|
||||
}
|
||||
|
||||
MFEM_FOREACH_THREAD(k, x, d)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(j, y, d)
|
||||
{
|
||||
for (int i = 0; i < d; ++i)
|
||||
{
|
||||
xx(i, j, k) = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
for (int face_id = 0; face_id < 6; ++face_id)
|
||||
{
|
||||
const int f = faces[face_id];
|
||||
|
||||
if (f < 0)
|
||||
{
|
||||
continue;
|
||||
}
|
||||
|
||||
const int side = sides[face_id];
|
||||
|
||||
// is this face parallel to the x-y plane in reference coordinates?
|
||||
const bool xy_plane = (face_id == 0 || face_id == 5);
|
||||
const bool xz_plane = (face_id == 1 || face_id == 3);
|
||||
|
||||
MFEM_FOREACH_THREAD(p1, x, q)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(p2, y, q)
|
||||
{
|
||||
const int p = p1 + q * p2;
|
||||
y_s[p] = d_y(p, 0, side, f);
|
||||
|
||||
const int ijk = f2v(p, side, f);
|
||||
const int k = ijk / q2d;
|
||||
const int i = ijk % q;
|
||||
const int j = (ijk - q2d*k) / q;
|
||||
|
||||
pp[(xy_plane || xz_plane) ? i : j][(xy_plane) ? j : k] = p;
|
||||
if (MFEM_THREAD_ID(x) == 0 && MFEM_THREAD_ID(y) == 0)
|
||||
{
|
||||
jj = (xy_plane) ? k : (xz_plane) ? j : i;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(n, x, d)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(m, y, d)
|
||||
{
|
||||
for (int l = 0; l < d; ++l)
|
||||
{
|
||||
const int p = (xy_plane) ? pp[l][m] : (xz_plane) ? pp[l][n] : pp[m][n];
|
||||
const int kk = (xy_plane) ? n : (xz_plane) ? m : l;
|
||||
const real_t g = G(jj, kk);
|
||||
xx(l, m, n) += g * y_s[p];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// map back to global array
|
||||
MFEM_FOREACH_THREAD(n, x, d)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(m, y, d)
|
||||
{
|
||||
for (int l = 0; l < d; ++l)
|
||||
{
|
||||
const int c = 0;
|
||||
d_x(t?c:l, t?l:m, t?m:n, t?n:el, t?el:c) += xx(l, m, n);
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
@@ -0,0 +1,85 @@
|
||||
// Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_NORMAL_DERIV_RESTRICTION
|
||||
#define MFEM_NORMAL_DERIV_RESTRICTION
|
||||
|
||||
#include "../mesh/mesh.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class FiniteElementSpace;
|
||||
enum class ElementDofOrdering;
|
||||
|
||||
/// @brief Class to compute face normal derivatives (in reference coordinate) of
|
||||
/// an L2 grid function (used internally by L2FaceRestriction).
|
||||
class L2NormalDerivativeFaceRestriction
|
||||
{
|
||||
protected:
|
||||
const FiniteElementSpace &fes; ///< The L2 finite element space.
|
||||
const FaceType face_type; ///< Face type: either boundary or interior.
|
||||
const int dim; ///< Dimension of the mesh.
|
||||
const int nf; ///< Number of faces of the given @a face_type.
|
||||
const int ne; ///< Number of elements.
|
||||
int ne_type; ///< Number of elements with faces of type face type
|
||||
|
||||
Array<int> face_to_elem; ///< Face-wise information array.
|
||||
Array<int> elem_to_face; ///< Element-wise information array.
|
||||
Array<int> face_to_vol; ///< maps face index to volume index
|
||||
|
||||
public:
|
||||
/// @brief Constructor.
|
||||
/// @param[in] fes_ The associated FiniteElementSpace (should be L2/DG).
|
||||
/// @param[in] f_ordering Request a specific face dof ordering. Currently
|
||||
/// only ElementDofOrdering::LEXICOGRAPHIC is supported.
|
||||
/// @param[in] face_type_ Type of faces to compute restriction (interior or boundary).
|
||||
L2NormalDerivativeFaceRestriction(const FiniteElementSpace &fes_,
|
||||
const ElementDofOrdering f_ordering,
|
||||
const FaceType face_type_);
|
||||
|
||||
/// @brief Computes the normal derivatives on the @a face_type faces of the mesh.
|
||||
/// @param[in] x The L-vector degrees of freedom.
|
||||
/// @param[out] y The face E(like)-vector degrees of freedom of the format
|
||||
/// (face_dofs x vdim x 2 x nf) where nf is the number of faces of type @a
|
||||
/// face_type. The face_dofs are ordered according to @a f_ordering specified
|
||||
/// in the constructor.
|
||||
void Mult(const Vector &x, Vector &y) const;
|
||||
|
||||
/// @brief Computes the transpose of the action of Mult(), accumulating into
|
||||
/// @a y with coefficient @a a.
|
||||
/// @param x Face E-vector layout (face_dofs x vdim x 2 x nf).
|
||||
/// @param y L-vector layout.
|
||||
/// @param a Optional coefficient (y = y + a*R^t*x)
|
||||
void AddMultTranspose(const Vector &x, Vector &y,
|
||||
const real_t a = 1.0) const;
|
||||
|
||||
/// @name Internal compute kernels. Public because of nvcc restriction.
|
||||
///@{
|
||||
|
||||
template <int T_D1D = 0>
|
||||
void Mult2D(const Vector &x, Vector &y) const;
|
||||
|
||||
template <int T_D1D = 0>
|
||||
void AddMultTranspose2D(const Vector &x, Vector &y, const real_t a) const;
|
||||
|
||||
template <int T_D1D = 0>
|
||||
void Mult3D(const Vector &x, Vector &y) const;
|
||||
|
||||
template <int T_D1D = 0>
|
||||
void AddMultTranspose3D(const Vector &x, Vector &y, const real_t a) const;
|
||||
|
||||
/// @}
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
#endif // MFEM_RESTRICTION
|
||||
@@ -368,6 +368,72 @@ const
|
||||
y.Add(a, Ytmp);
|
||||
}
|
||||
|
||||
real_t ParBilinearForm::ParInnerProduct(const ParGridFunction &x,
|
||||
const ParGridFunction &y) const
|
||||
{
|
||||
MFEM_ASSERT(mat != NULL, "local matrix must be assembled");
|
||||
|
||||
real_t loc = InnerProduct(x, y);
|
||||
real_t glob = 0.;
|
||||
|
||||
MPI_Allreduce(&loc, &glob, 1, MPITypeMap<real_t>::mpi_type, MPI_SUM,
|
||||
pfes->GetComm());
|
||||
|
||||
return glob;
|
||||
}
|
||||
|
||||
real_t ParBilinearForm::TrueInnerProduct(const ParGridFunction &x,
|
||||
const ParGridFunction &y) const
|
||||
{
|
||||
MFEM_ASSERT(x.ParFESpace() == pfes, "the parallel spaces must match");
|
||||
MFEM_ASSERT(y.ParFESpace() == pfes, "the parallel spaces must match");
|
||||
|
||||
HypreParVector *x_p = x.ParallelProject();
|
||||
HypreParVector *y_p = y.ParallelProject();
|
||||
|
||||
real_t res = TrueInnerProduct(*x_p, *y_p);
|
||||
|
||||
delete x_p;
|
||||
delete y_p;
|
||||
|
||||
return res;
|
||||
}
|
||||
|
||||
real_t ParBilinearForm::TrueInnerProduct(HypreParVector &x,
|
||||
HypreParVector &y) const
|
||||
{
|
||||
MFEM_VERIFY(p_mat.Ptr() != NULL, "parallel matrix must be assembled");
|
||||
|
||||
if (p_mat->GetType() != Operator::Hypre_ParCSR)
|
||||
{
|
||||
return TrueInnerProduct((const Vector&)x, (const Vector&)y);
|
||||
}
|
||||
|
||||
HypreParVector *Ax = new HypreParVector(pfes);
|
||||
HypreParMatrix *A = p_mat.As<HypreParMatrix>();
|
||||
|
||||
A->Mult(x, *Ax);
|
||||
|
||||
real_t res = mfem::InnerProduct(y, *Ax);
|
||||
|
||||
delete Ax;
|
||||
|
||||
return res;
|
||||
}
|
||||
|
||||
real_t ParBilinearForm::TrueInnerProduct(const Vector &x,
|
||||
const Vector &y) const
|
||||
{
|
||||
MFEM_VERIFY(p_mat.Ptr() != NULL, "parallel matrix must be assembled");
|
||||
|
||||
Vector Ax(pfes->GetTrueVSize());
|
||||
p_mat->Mult(x, Ax);
|
||||
|
||||
real_t res = mfem::InnerProduct(pfes->GetComm(), y, Ax);
|
||||
|
||||
return res;
|
||||
}
|
||||
|
||||
void ParBilinearForm::FormLinearSystem(
|
||||
const Array<int> &ess_tdof_list, Vector &x, Vector &b,
|
||||
OperatorHandle &A, Vector &X, Vector &B, int copy_interior)
|
||||
|
||||
@@ -173,6 +173,37 @@ public:
|
||||
vectors on the true dofs. */
|
||||
void TrueAddMult(const Vector &x, Vector &y, const real_t a = 1.0) const;
|
||||
|
||||
/// Compute $ y^T M x $
|
||||
/** @warning The calculation is performed on local dofs, assuming that
|
||||
the local vectors are consistent with the prolongations of the true
|
||||
vectors (see ParGridFunction::Distribute()). If this is not the case,
|
||||
use TrueInnerProduct(const ParGridFunction &, const ParGridFunction &)
|
||||
instead.
|
||||
@note It is assumed that the local matrix is assembled and it has
|
||||
not been replaced by the parallel matrix through FormSystemMatrix().
|
||||
@see TrueInnerProduct(const ParGridFunction&, const ParGridFunction&) */
|
||||
real_t ParInnerProduct(const ParGridFunction &x,
|
||||
const ParGridFunction &y) const;
|
||||
|
||||
/// Compute $ y^T M x $ on true dofs (grid function version)
|
||||
/** @note The ParGridFunction%s are restricted to the true-vectors for
|
||||
for calculation.
|
||||
@note It is assumed that the parallel system matrix is assembled,
|
||||
see FormSystemMatrix().
|
||||
@see ParInnerProduct(const ParGridFunction&, const ParGridFunction&) */
|
||||
real_t TrueInnerProduct(const ParGridFunction &x,
|
||||
const ParGridFunction &y) const;
|
||||
|
||||
/// Compute $ y^T M x $ on true dofs (Hypre vector version)
|
||||
/** @note It is assumed that the parallel system matrix is assembled,
|
||||
see FormSystemMatrix(). */
|
||||
real_t TrueInnerProduct(HypreParVector &x, HypreParVector &y) const;
|
||||
|
||||
/// Compute $ y^T M x $ on true dofs (true-vector version)
|
||||
/** @note It is assumed that the parallel system matrix is assembled,
|
||||
see FormSystemMatrix(). */
|
||||
real_t TrueInnerProduct(const Vector &x, const Vector &y) const;
|
||||
|
||||
/// Return the parallel FE space associated with the ParBilinearForm.
|
||||
ParFiniteElementSpace *ParFESpace() const { return pfes; }
|
||||
|
||||
|
||||
+7
-7
@@ -861,17 +861,17 @@ void ParFiniteElementSpace::Build_Dof_TrueDof_Matrix() const // matrix P
|
||||
}
|
||||
}
|
||||
|
||||
HYPRE_Int *i_diag = new HYPRE_Int[ldof+1];
|
||||
HYPRE_Int *j_diag = new HYPRE_Int[ltdof];
|
||||
real_t *d_diag = new real_t[ltdof];
|
||||
HYPRE_Int *i_diag = Memory<HYPRE_Int>(ldof+1);
|
||||
HYPRE_Int *j_diag = Memory<HYPRE_Int>(ltdof);
|
||||
real_t *d_diag = Memory<real_t>(ltdof);
|
||||
int diag_counter;
|
||||
|
||||
HYPRE_Int *i_offd = new HYPRE_Int[ldof+1];
|
||||
HYPRE_Int *j_offd = new HYPRE_Int[nnz_offd];
|
||||
real_t *d_offd = new real_t[nnz_offd];
|
||||
HYPRE_Int *i_offd = Memory<HYPRE_Int>(ldof+1);
|
||||
HYPRE_Int *j_offd = Memory<HYPRE_Int>(nnz_offd);
|
||||
real_t *d_offd = Memory<real_t>(nnz_offd);
|
||||
int offd_counter;
|
||||
|
||||
HYPRE_BigInt *cmap = new HYPRE_BigInt[ldof-ltdof];
|
||||
HYPRE_BigInt *cmap = Memory<HYPRE_BigInt>(ldof-ltdof);
|
||||
|
||||
HYPRE_BigInt *col_starts = GetTrueDofOffsets();
|
||||
HYPRE_BigInt *row_starts = GetDofOffsets();
|
||||
|
||||
+11
-8
@@ -39,9 +39,10 @@ ParGridFunction::ParGridFunction(ParMesh *pmesh, const GridFunction *gf,
|
||||
{
|
||||
const FiniteElementSpace *glob_fes = gf->FESpace();
|
||||
// duplicate the FiniteElementCollection from 'gf'
|
||||
fec = FiniteElementCollection::New(glob_fes->FEColl()->Name());
|
||||
fec_owned = FiniteElementCollection::New(glob_fes->FEColl()->Name());
|
||||
// create a local ParFiniteElementSpace from the global one:
|
||||
fes = pfes = new ParFiniteElementSpace(pmesh, glob_fes, partitioning, fec);
|
||||
fes = pfes = new ParFiniteElementSpace(pmesh, glob_fes, partitioning,
|
||||
fec_owned);
|
||||
SetSize(pfes->GetVSize());
|
||||
|
||||
if (partitioning)
|
||||
@@ -81,7 +82,7 @@ ParGridFunction::ParGridFunction(ParMesh *pmesh, std::istream &input)
|
||||
: GridFunction(pmesh, input)
|
||||
{
|
||||
// Convert the FiniteElementSpace, fes, to a ParFiniteElementSpace:
|
||||
pfes = new ParFiniteElementSpace(pmesh, fec, fes->GetVDim(),
|
||||
pfes = new ParFiniteElementSpace(pmesh, fec_owned, fes->GetVDim(),
|
||||
fes->GetOrdering());
|
||||
delete fes;
|
||||
fes = pfes;
|
||||
@@ -249,6 +250,8 @@ void ParGridFunction::ExchangeFaceNbrData()
|
||||
auto send_data_ptr = mpi_gpu_aware ? send_data.Read() : send_data.HostRead();
|
||||
auto face_nbr_data_ptr = mpi_gpu_aware ? face_nbr_data.Write() :
|
||||
face_nbr_data.HostWrite();
|
||||
// Wait for the kernel to be done since it updates what's sent and it may be async
|
||||
if (mpi_gpu_aware) { MFEM_STREAM_SYNC; }
|
||||
for (int fn = 0; fn < num_face_nbrs; fn++)
|
||||
{
|
||||
int nbr_rank = pmesh->GetFaceNbrRank(fn);
|
||||
@@ -518,7 +521,7 @@ void ParGridFunction::CountElementsPerVDof(Array<int> &elem_per_vdof) const
|
||||
}
|
||||
|
||||
void ParGridFunction::GetDerivative(int comp, int der_comp,
|
||||
ParGridFunction &der)
|
||||
ParGridFunction &der) const
|
||||
{
|
||||
Array<int> overlap;
|
||||
AccumulateAndCountDerivativeValues(comp, der_comp, der, overlap);
|
||||
@@ -713,10 +716,10 @@ void ParGridFunction::ProjectBdrCoefficient(
|
||||
}
|
||||
}
|
||||
}
|
||||
gcomm.Bcast<int>(values_counter.HostReadWrite());
|
||||
for (int i = 0; i < values_counter.Size(); i++)
|
||||
{
|
||||
MFEM_ASSERT(pfes->GetLocalTDofNumber(i) == -1 ||
|
||||
bool(values_counter[i]) == bool(ess_vdofs_marker[i]),
|
||||
MFEM_ASSERT(bool(values_counter[i]) == bool(ess_vdofs_marker[i]),
|
||||
"internal error");
|
||||
}
|
||||
#endif
|
||||
@@ -753,10 +756,10 @@ void ParGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient &vcoeff,
|
||||
#ifdef MFEM_DEBUG
|
||||
Array<int> ess_vdofs_marker;
|
||||
pfes->GetEssentialVDofs(bdr_attr, ess_vdofs_marker);
|
||||
gcomm.Bcast<int>(values_counter.HostReadWrite());
|
||||
for (int i = 0; i < values_counter.Size(); i++)
|
||||
{
|
||||
MFEM_ASSERT(pfes->GetLocalTDofNumber(i) == -1 ||
|
||||
bool(values_counter[i]) == bool(ess_vdofs_marker[i]),
|
||||
MFEM_ASSERT(bool(values_counter[i]) == bool(ess_vdofs_marker[i]),
|
||||
"internal error: " << pfes->GetLocalTDofNumber(i) << ' ' << bool(
|
||||
values_counter[i]));
|
||||
}
|
||||
|
||||
+1
-2
@@ -231,7 +231,7 @@ public:
|
||||
void CountElementsPerVDof(Array<int> &elem_per_vdof) const override;
|
||||
|
||||
/// Parallel version of GridFunction::GetDerivative(); see its documentation.
|
||||
void GetDerivative(int comp, int der_comp, ParGridFunction &der);
|
||||
void GetDerivative(int comp, int der_comp, ParGridFunction &der) const;
|
||||
|
||||
/** Sets the output vector @a dof_vals to the values of the degrees of
|
||||
freedom of element @a el. If @a el is greater than or equal to the number
|
||||
@@ -262,7 +262,6 @@ public:
|
||||
const Array<int> &attr) override
|
||||
{ ProjectBdrCoefficient(coeff, NULL, attr); }
|
||||
|
||||
// Only the values in the master are guaranteed to be correct!
|
||||
void ProjectBdrCoefficientTangent(VectorCoefficient &vcoeff,
|
||||
const Array<int> &bdr_attr) override;
|
||||
|
||||
|
||||
+17
-31
@@ -18,6 +18,7 @@
|
||||
#include "pgridfunc.hpp"
|
||||
#include "pfespace.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "fe/face_map_utils.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
|
||||
namespace mfem
|
||||
@@ -277,21 +278,22 @@ void ParNCH1FaceRestriction::ComputeGatherIndices(
|
||||
gather_offsets[0] = 0;
|
||||
}
|
||||
|
||||
ParL2FaceRestriction::ParL2FaceRestriction(const ParFiniteElementSpace &fes,
|
||||
ParL2FaceRestriction::ParL2FaceRestriction(const ParFiniteElementSpace &pfes_,
|
||||
ElementDofOrdering f_ordering,
|
||||
FaceType type,
|
||||
L2FaceValues m,
|
||||
bool build)
|
||||
: L2FaceRestriction(fes, f_ordering, type, m, false)
|
||||
: L2FaceRestriction(pfes_, f_ordering, type, m, false),
|
||||
pfes(pfes_)
|
||||
{
|
||||
if (!build) { return; }
|
||||
if (nf==0) { return; }
|
||||
|
||||
CheckFESpace(f_ordering);
|
||||
CheckFESpace();
|
||||
|
||||
ComputeScatterIndicesAndOffsets(f_ordering, type);
|
||||
ComputeScatterIndicesAndOffsets();
|
||||
|
||||
ComputeGatherIndices(f_ordering, type);
|
||||
ComputeGatherIndices();
|
||||
}
|
||||
|
||||
ParL2FaceRestriction::ParL2FaceRestriction(const ParFiniteElementSpace &fes,
|
||||
@@ -307,14 +309,8 @@ void ParL2FaceRestriction::DoubleValuedConformingMult(
|
||||
MFEM_ASSERT(
|
||||
m == L2FaceValues::DoubleValued,
|
||||
"This method should be called when m == L2FaceValues::DoubleValued.");
|
||||
const ParFiniteElementSpace &pfes =
|
||||
static_cast<const ParFiniteElementSpace&>(this->fes);
|
||||
ParGridFunction x_gf;
|
||||
x_gf.MakeRef(const_cast<ParFiniteElementSpace*>(&pfes),
|
||||
const_cast<Vector&>(x), 0);
|
||||
// Face-neighbor information is only needed for interior faces. For boundary
|
||||
// faces, no communication is required.
|
||||
if (type == FaceType::Interior) { x_gf.ExchangeFaceNbrData(); }
|
||||
|
||||
Vector face_nbr_data = GetLVectorFaceNbrData(fes, x, type);
|
||||
|
||||
// Early return only after calling ParGridFunction::ExchangeFaceNbrData,
|
||||
// otherwise MPI communication can hang.
|
||||
@@ -329,7 +325,7 @@ void ParL2FaceRestriction::DoubleValuedConformingMult(
|
||||
auto d_indices1 = scatter_indices1.Read();
|
||||
auto d_indices2 = scatter_indices2.Read();
|
||||
auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
|
||||
auto d_x_shared = Reshape(x_gf.FaceNbrData().Read(),
|
||||
auto d_x_shared = Reshape(face_nbr_data.Read(),
|
||||
t?vd:nsdofs, t?nsdofs:vd);
|
||||
auto d_y = Reshape(y.Write(), nface_dofs, vd, 2, nf);
|
||||
mfem::forall(nfdofs, [=] MFEM_HOST_DEVICE (int i)
|
||||
@@ -567,13 +563,9 @@ void ParL2FaceRestriction::FillJAndData(const Vector &ea_data,
|
||||
});
|
||||
}
|
||||
|
||||
void ParL2FaceRestriction::ComputeScatterIndicesAndOffsets(
|
||||
const ElementDofOrdering f_ordering,
|
||||
const FaceType type)
|
||||
void ParL2FaceRestriction::ComputeScatterIndicesAndOffsets()
|
||||
{
|
||||
Mesh &mesh = *fes.GetMesh();
|
||||
const ParFiniteElementSpace &pfes =
|
||||
static_cast<const ParFiniteElementSpace&>(this->fes);
|
||||
|
||||
// Initialization of the offsets
|
||||
for (int i = 0; i <= ndofs; ++i)
|
||||
@@ -622,9 +614,7 @@ void ParL2FaceRestriction::ComputeScatterIndicesAndOffsets(
|
||||
}
|
||||
|
||||
|
||||
void ParL2FaceRestriction::ComputeGatherIndices(
|
||||
const ElementDofOrdering f_ordering,
|
||||
const FaceType type)
|
||||
void ParL2FaceRestriction::ComputeGatherIndices()
|
||||
{
|
||||
Mesh &mesh = *fes.GetMesh();
|
||||
|
||||
@@ -666,11 +656,11 @@ ParNCL2FaceRestriction::ParNCL2FaceRestriction(const ParFiniteElementSpace &fes,
|
||||
if (nf==0) { return; }
|
||||
x_interp.UseDevice(true);
|
||||
|
||||
CheckFESpace(f_ordering);
|
||||
CheckFESpace();
|
||||
|
||||
ComputeScatterIndicesAndOffsets(f_ordering, type);
|
||||
ComputeScatterIndicesAndOffsets();
|
||||
|
||||
ComputeGatherIndices(f_ordering, type);
|
||||
ComputeGatherIndices();
|
||||
}
|
||||
|
||||
void ParNCL2FaceRestriction::SingleValuedNonconformingMult(
|
||||
@@ -979,9 +969,7 @@ void ParNCL2FaceRestriction::FillJAndData(const Vector &ea_data,
|
||||
MFEM_ABORT("Not yet implemented.");
|
||||
}
|
||||
|
||||
void ParNCL2FaceRestriction::ComputeScatterIndicesAndOffsets(
|
||||
const ElementDofOrdering f_ordering,
|
||||
const FaceType type)
|
||||
void ParNCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
|
||||
{
|
||||
Mesh &mesh = *fes.GetMesh();
|
||||
|
||||
@@ -1064,9 +1052,7 @@ void ParNCL2FaceRestriction::ComputeScatterIndicesAndOffsets(
|
||||
interpolations.InitializeNCInterpConfig();
|
||||
}
|
||||
|
||||
void ParNCL2FaceRestriction::ComputeGatherIndices(
|
||||
const ElementDofOrdering f_ordering,
|
||||
const FaceType type)
|
||||
void ParNCL2FaceRestriction::ComputeGatherIndices()
|
||||
{
|
||||
Mesh &mesh = *fes.GetMesh();
|
||||
|
||||
|
||||
+8
-22
@@ -139,9 +139,11 @@ public: // For nvcc
|
||||
class ParL2FaceRestriction : virtual public L2FaceRestriction
|
||||
{
|
||||
protected:
|
||||
const ParFiniteElementSpace &pfes;
|
||||
|
||||
/** @brief Constructs an ParL2FaceRestriction.
|
||||
|
||||
@param[in] fes The ParFiniteElementSpace on which this operates
|
||||
@param[in] pfes_ The ParFiniteElementSpace on which this operates
|
||||
@param[in] f_ordering Request a specific face dof ordering
|
||||
@param[in] type Request internal or boundary faces dofs
|
||||
@param[in] m Request the face dofs for elem1, or both elem1 and
|
||||
@@ -149,7 +151,7 @@ protected:
|
||||
@param[in] build Request the ParL2FaceRestriction to compute the
|
||||
scatter/gather indices. False should only be used
|
||||
when inheriting from ParL2FaceRestriction. */
|
||||
ParL2FaceRestriction(const ParFiniteElementSpace& fes,
|
||||
ParL2FaceRestriction(const ParFiniteElementSpace &pfes_,
|
||||
ElementDofOrdering f_ordering,
|
||||
FaceType type,
|
||||
L2FaceValues m,
|
||||
@@ -229,22 +231,14 @@ public:
|
||||
private:
|
||||
/** @brief Compute the scatter indices: L-vector to E-vector, and the offsets
|
||||
for the gathering: E-vector to L-vector.
|
||||
|
||||
@param[in] f_ordering Request a specific face dof ordering.
|
||||
@param[in] type Request internal or boundary faces dofs.
|
||||
*/
|
||||
void ComputeScatterIndicesAndOffsets(const ElementDofOrdering f_ordering,
|
||||
const FaceType type);
|
||||
void ComputeScatterIndicesAndOffsets();
|
||||
|
||||
/** @brief Compute the gather indices: E-vector to L-vector.
|
||||
|
||||
Note: Requires the gather offsets to be computed.
|
||||
|
||||
@param[in] f_ordering Request a specific face dof ordering.
|
||||
@param[in] type Request internal or boundary faces dofs.
|
||||
*/
|
||||
void ComputeGatherIndices(const ElementDofOrdering f_ordering,
|
||||
const FaceType type);
|
||||
void ComputeGatherIndices();
|
||||
|
||||
public:
|
||||
/** @brief Scatter the degrees of freedom, i.e. goes from L-Vector to
|
||||
@@ -381,22 +375,14 @@ private:
|
||||
/** @brief Compute the scatter indices: L-vector to E-vector, the offsets
|
||||
for the gathering: E-vector to L-vector, and the interpolators from
|
||||
coarse to fine face for master non-comforming faces.
|
||||
|
||||
@param[in] f_ordering Request a specific face dof ordering.
|
||||
@param[in] type Request internal or boundary faces dofs.
|
||||
*/
|
||||
void ComputeScatterIndicesAndOffsets(const ElementDofOrdering f_ordering,
|
||||
const FaceType type);
|
||||
void ComputeScatterIndicesAndOffsets();
|
||||
|
||||
/** @brief Compute the gather indices: E-vector to L-vector.
|
||||
|
||||
Note: Requires the gather offsets to be computed.
|
||||
|
||||
@param[in] f_ordering Request a specific face dof ordering.
|
||||
@param[in] type Request internal or boundary faces dofs.
|
||||
*/
|
||||
void ComputeGatherIndices(const ElementDofOrdering f_ordering,
|
||||
const FaceType type);
|
||||
void ComputeGatherIndices();
|
||||
|
||||
public:
|
||||
/** @brief Scatter the degrees of freedom, i.e. goes from L-Vector to
|
||||
|
||||
@@ -215,6 +215,10 @@ public:
|
||||
/// quadrature point, oriented relative to "element 1".
|
||||
int GetPermutedIndex(int idx, int iq) const override;
|
||||
|
||||
/// @brief Get the face index (in the standard Mesh numbering) associated
|
||||
/// with face @a idx in the FaceQuadratureSpace.
|
||||
int GetMeshFaceIndex(int idx) const { return face_indices[idx]; }
|
||||
|
||||
/// @brief Returns the index associated with the face described by @a T.
|
||||
///
|
||||
/// The index may differ from the mesh face or boundary element index
|
||||
|
||||
+78
-143
@@ -10,17 +10,16 @@
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "restriction.hpp"
|
||||
#include "normal_deriv_restriction.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "pgridfunc.hpp"
|
||||
#include "qspace.hpp"
|
||||
#include "fe/face_map_utils.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
|
||||
#include <climits>
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
|
||||
#include "pfespace.hpp"
|
||||
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
@@ -907,112 +906,6 @@ void ConformingFaceRestriction::SetFaceDofsGatherIndices(
|
||||
}
|
||||
}
|
||||
|
||||
static int ToLexOrdering2D(const int face_id, const int size1d, const int i)
|
||||
{
|
||||
if (face_id==2 || face_id==3)
|
||||
{
|
||||
return size1d-1-i;
|
||||
}
|
||||
else
|
||||
{
|
||||
return i;
|
||||
}
|
||||
}
|
||||
|
||||
static int PermuteFace2D(const int face_id1, const int face_id2,
|
||||
const int orientation,
|
||||
const int size1d, const int index)
|
||||
{
|
||||
int new_index;
|
||||
// Convert from lex ordering
|
||||
if (face_id1==2 || face_id1==3)
|
||||
{
|
||||
new_index = size1d-1-index;
|
||||
}
|
||||
else
|
||||
{
|
||||
new_index = index;
|
||||
}
|
||||
// Permute based on face orientations
|
||||
if (orientation==1)
|
||||
{
|
||||
new_index = size1d-1-new_index;
|
||||
}
|
||||
return ToLexOrdering2D(face_id2, size1d, new_index);
|
||||
}
|
||||
|
||||
static int ToLexOrdering3D(const int face_id, const int size1d, const int i,
|
||||
const int j)
|
||||
{
|
||||
if (face_id==2 || face_id==1 || face_id==5)
|
||||
{
|
||||
return i + j*size1d;
|
||||
}
|
||||
else if (face_id==3 || face_id==4)
|
||||
{
|
||||
return (size1d-1-i) + j*size1d;
|
||||
}
|
||||
else // face_id==0
|
||||
{
|
||||
return i + (size1d-1-j)*size1d;
|
||||
}
|
||||
}
|
||||
|
||||
static int PermuteFace3D(const int face_id1, const int face_id2,
|
||||
const int orientation,
|
||||
const int size1d, const int index)
|
||||
{
|
||||
int i=0, j=0, new_i=0, new_j=0;
|
||||
i = index%size1d;
|
||||
j = index/size1d;
|
||||
// Convert from lex ordering
|
||||
if (face_id1==3 || face_id1==4)
|
||||
{
|
||||
i = size1d-1-i;
|
||||
}
|
||||
else if (face_id1==0)
|
||||
{
|
||||
j = size1d-1-j;
|
||||
}
|
||||
// Permute based on face orientations
|
||||
switch (orientation)
|
||||
{
|
||||
case 0:
|
||||
new_i = i;
|
||||
new_j = j;
|
||||
break;
|
||||
case 1:
|
||||
new_i = j;
|
||||
new_j = i;
|
||||
break;
|
||||
case 2:
|
||||
new_i = j;
|
||||
new_j = (size1d-1-i);
|
||||
break;
|
||||
case 3:
|
||||
new_i = (size1d-1-i);
|
||||
new_j = j;
|
||||
break;
|
||||
case 4:
|
||||
new_i = (size1d-1-i);
|
||||
new_j = (size1d-1-j);
|
||||
break;
|
||||
case 5:
|
||||
new_i = (size1d-1-j);
|
||||
new_j = (size1d-1-i);
|
||||
break;
|
||||
case 6:
|
||||
new_i = (size1d-1-j);
|
||||
new_j = i;
|
||||
break;
|
||||
case 7:
|
||||
new_i = i;
|
||||
new_j = (size1d-1-j);
|
||||
break;
|
||||
}
|
||||
return ToLexOrdering3D(face_id2, size1d, new_i, new_j);
|
||||
}
|
||||
|
||||
// Permute dofs or quads on a face for e2 to match with the ordering of e1
|
||||
int PermuteFaceL2(const int dim, const int face_id1,
|
||||
const int face_id2, const int orientation,
|
||||
@@ -1023,9 +916,9 @@ int PermuteFaceL2(const int dim, const int face_id1,
|
||||
case 1:
|
||||
return 0;
|
||||
case 2:
|
||||
return PermuteFace2D(face_id1, face_id2, orientation, size1d, index);
|
||||
return internal::PermuteFace2D(face_id1, face_id2, orientation, size1d, index);
|
||||
case 3:
|
||||
return PermuteFace3D(face_id1, face_id2, orientation, size1d, index);
|
||||
return internal::PermuteFace3D(face_id1, face_id2, orientation, size1d, index);
|
||||
default:
|
||||
MFEM_ABORT("Unsupported dimension.");
|
||||
return 0;
|
||||
@@ -1038,6 +931,7 @@ L2FaceRestriction::L2FaceRestriction(const FiniteElementSpace &fes,
|
||||
const L2FaceValues m,
|
||||
bool build)
|
||||
: fes(fes),
|
||||
ordering(f_ordering),
|
||||
nf(fes.GetNFbyType(type)),
|
||||
ne(fes.GetNE()),
|
||||
vdim(fes.GetVDim()),
|
||||
@@ -1060,11 +954,9 @@ L2FaceRestriction::L2FaceRestriction(const FiniteElementSpace &fes,
|
||||
width = fes.GetVSize();
|
||||
if (!build) { return; }
|
||||
|
||||
CheckFESpace(f_ordering);
|
||||
|
||||
ComputeScatterIndicesAndOffsets(f_ordering,type);
|
||||
|
||||
ComputeGatherIndices(f_ordering, type);
|
||||
CheckFESpace();
|
||||
ComputeScatterIndicesAndOffsets();
|
||||
ComputeGatherIndices();
|
||||
}
|
||||
|
||||
L2FaceRestriction::L2FaceRestriction(const FiniteElementSpace &fes,
|
||||
@@ -1327,7 +1219,7 @@ void L2FaceRestriction::AddFaceMatricesToElementMatrices(const Vector &fea_data,
|
||||
}
|
||||
}
|
||||
|
||||
void L2FaceRestriction::CheckFESpace(const ElementDofOrdering f_ordering)
|
||||
void L2FaceRestriction::CheckFESpace()
|
||||
{
|
||||
#ifdef MFEM_USE_MPI
|
||||
|
||||
@@ -1351,7 +1243,7 @@ void L2FaceRestriction::CheckFESpace(const ElementDofOrdering f_ordering)
|
||||
"Only Gauss-Lobatto and Bernstein basis are supported in "
|
||||
"L2FaceRestriction.");
|
||||
if (nf==0) { return; }
|
||||
const bool dof_reorder = (f_ordering == ElementDofOrdering::LEXICOGRAPHIC);
|
||||
const bool dof_reorder = (ordering == ElementDofOrdering::LEXICOGRAPHIC);
|
||||
if (!dof_reorder)
|
||||
{
|
||||
MFEM_ABORT("Non-Tensor L2FaceRestriction not yet implemented.");
|
||||
@@ -1371,9 +1263,7 @@ void L2FaceRestriction::CheckFESpace(const ElementDofOrdering f_ordering)
|
||||
#endif
|
||||
}
|
||||
|
||||
void L2FaceRestriction::ComputeScatterIndicesAndOffsets(
|
||||
const ElementDofOrdering f_ordering,
|
||||
const FaceType face_type)
|
||||
void L2FaceRestriction::ComputeScatterIndicesAndOffsets()
|
||||
{
|
||||
Mesh &mesh = *fes.GetMesh();
|
||||
// Initialization of the offsets
|
||||
@@ -1389,16 +1279,16 @@ void L2FaceRestriction::ComputeScatterIndicesAndOffsets(
|
||||
Mesh::FaceInformation face = mesh.GetFaceInformation(f);
|
||||
MFEM_ASSERT(!face.IsShared(),
|
||||
"Unexpected shared face in L2FaceRestriction.");
|
||||
if ( face.IsOfFaceType(face_type) )
|
||||
if ( face.IsOfFaceType(type) )
|
||||
{
|
||||
SetFaceDofsScatterIndices1(face,f_ind);
|
||||
if ( m==L2FaceValues::DoubleValued )
|
||||
{
|
||||
if ( face_type==FaceType::Interior && face.IsInterior() )
|
||||
if ( type==FaceType::Interior && face.IsInterior() )
|
||||
{
|
||||
PermuteAndSetFaceDofsScatterIndices2(face,f_ind);
|
||||
}
|
||||
else if ( face_type==FaceType::Boundary && face.IsBoundary() )
|
||||
else if ( type==FaceType::Boundary && face.IsBoundary() )
|
||||
{
|
||||
SetBoundaryDofsScatterIndices2(face,f_ind);
|
||||
}
|
||||
@@ -1415,9 +1305,7 @@ void L2FaceRestriction::ComputeScatterIndicesAndOffsets(
|
||||
}
|
||||
}
|
||||
|
||||
void L2FaceRestriction::ComputeGatherIndices(
|
||||
const ElementDofOrdering f_ordering,
|
||||
const FaceType face_type)
|
||||
void L2FaceRestriction::ComputeGatherIndices()
|
||||
{
|
||||
Mesh &mesh = *fes.GetMesh();
|
||||
// Computation of gather_indices
|
||||
@@ -1427,11 +1315,11 @@ void L2FaceRestriction::ComputeGatherIndices(
|
||||
Mesh::FaceInformation face = mesh.GetFaceInformation(f);
|
||||
MFEM_ASSERT(!face.IsShared(),
|
||||
"Unexpected shared face in L2FaceRestriction.");
|
||||
if ( face.IsOfFaceType(face_type) )
|
||||
if ( face.IsOfFaceType(type) )
|
||||
{
|
||||
SetFaceDofsGatherIndices1(face,f_ind);
|
||||
if ( m==L2FaceValues::DoubleValued &&
|
||||
face_type==FaceType::Interior &&
|
||||
type==FaceType::Interior &&
|
||||
face.IsLocal())
|
||||
{
|
||||
PermuteAndSetFaceDofsGatherIndices2(face,f_ind);
|
||||
@@ -1598,6 +1486,28 @@ void L2FaceRestriction::PermuteAndSetFaceDofsGatherIndices2(
|
||||
}
|
||||
}
|
||||
|
||||
void L2FaceRestriction::NormalDerivativeMult(const Vector &x, Vector &y) const
|
||||
{
|
||||
EnsureNormalDerivativeRestriction();
|
||||
normal_deriv_restr->Mult(x, y);
|
||||
}
|
||||
|
||||
void L2FaceRestriction::NormalDerivativeAddMultTranspose(const Vector &x,
|
||||
Vector &y) const
|
||||
{
|
||||
EnsureNormalDerivativeRestriction();
|
||||
normal_deriv_restr->AddMultTranspose(x, y);
|
||||
}
|
||||
|
||||
void L2FaceRestriction::EnsureNormalDerivativeRestriction() const
|
||||
{
|
||||
if (!normal_deriv_restr)
|
||||
{
|
||||
normal_deriv_restr.reset(
|
||||
new L2NormalDerivativeFaceRestriction(fes, ordering, type));
|
||||
}
|
||||
}
|
||||
|
||||
InterpolationManager::InterpolationManager(const FiniteElementSpace &fes,
|
||||
ElementDofOrdering ordering,
|
||||
FaceType type)
|
||||
@@ -1775,11 +1685,11 @@ NCL2FaceRestriction::NCL2FaceRestriction(const FiniteElementSpace &fes,
|
||||
if (!build) { return; }
|
||||
x_interp.UseDevice(true);
|
||||
|
||||
CheckFESpace(f_ordering);
|
||||
CheckFESpace();
|
||||
|
||||
ComputeScatterIndicesAndOffsets(f_ordering, type);
|
||||
ComputeScatterIndicesAndOffsets();
|
||||
|
||||
ComputeGatherIndices(f_ordering, type);
|
||||
ComputeGatherIndices();
|
||||
}
|
||||
|
||||
NCL2FaceRestriction::NCL2FaceRestriction(const FiniteElementSpace &fes,
|
||||
@@ -2259,18 +2169,16 @@ int ToLexOrdering(const int dim, const int face_id, const int size1d,
|
||||
case 1:
|
||||
return 0;
|
||||
case 2:
|
||||
return ToLexOrdering2D(face_id, size1d, index);
|
||||
return internal::ToLexOrdering2D(face_id, size1d, index);
|
||||
case 3:
|
||||
return ToLexOrdering3D(face_id, size1d, index%size1d, index/size1d);
|
||||
return internal::ToLexOrdering3D(face_id, size1d, index%size1d, index/size1d);
|
||||
default:
|
||||
MFEM_ABORT("Unsupported dimension.");
|
||||
return 0;
|
||||
}
|
||||
}
|
||||
|
||||
void NCL2FaceRestriction::ComputeScatterIndicesAndOffsets(
|
||||
const ElementDofOrdering f_ordering,
|
||||
const FaceType type)
|
||||
void NCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
|
||||
{
|
||||
Mesh &mesh = *fes.GetMesh();
|
||||
|
||||
@@ -2334,9 +2242,7 @@ void NCL2FaceRestriction::ComputeScatterIndicesAndOffsets(
|
||||
interpolations.InitializeNCInterpConfig();
|
||||
}
|
||||
|
||||
void NCL2FaceRestriction::ComputeGatherIndices(
|
||||
const ElementDofOrdering f_ordering,
|
||||
const FaceType type)
|
||||
void NCL2FaceRestriction::ComputeGatherIndices()
|
||||
{
|
||||
Mesh &mesh = *fes.GetMesh();
|
||||
// Computation of gather_indices
|
||||
@@ -2376,4 +2282,33 @@ void NCL2FaceRestriction::ComputeGatherIndices(
|
||||
gather_offsets[0] = 0;
|
||||
}
|
||||
|
||||
Vector GetLVectorFaceNbrData(
|
||||
const FiniteElementSpace &fes, const Vector &x, FaceType ftype)
|
||||
{
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (ftype == FaceType::Interior)
|
||||
{
|
||||
if (auto *pfes = const_cast<ParFiniteElementSpace*>
|
||||
(dynamic_cast<const ParFiniteElementSpace*>(&fes)))
|
||||
{
|
||||
if (auto *x_gf = const_cast<ParGridFunction*>
|
||||
(dynamic_cast<const ParGridFunction*>(&x)))
|
||||
{
|
||||
Vector &gf_face_nbr = x_gf->FaceNbrData();
|
||||
if (gf_face_nbr.Size() == 0) { x_gf->ExchangeFaceNbrData(); }
|
||||
gf_face_nbr.Read();
|
||||
return Vector(gf_face_nbr, 0, gf_face_nbr.Size());
|
||||
}
|
||||
else
|
||||
{
|
||||
ParGridFunction gf(pfes, const_cast<Vector&>(x));
|
||||
gf.ExchangeFaceNbrData();
|
||||
return std::move(gf.FaceNbrData());
|
||||
}
|
||||
}
|
||||
}
|
||||
#endif
|
||||
return Vector();
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
+88
-24
@@ -14,6 +14,7 @@
|
||||
|
||||
#include "../linalg/operator.hpp"
|
||||
#include "../mesh/mesh.hpp"
|
||||
#include "normal_deriv_restriction.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -21,6 +22,8 @@ namespace mfem
|
||||
class FiniteElementSpace;
|
||||
enum class ElementDofOrdering;
|
||||
|
||||
class FaceQuadratureSpace;
|
||||
|
||||
/// Abstract base class that defines an interface for element restrictions.
|
||||
class ElementRestrictionOperator : public Operator
|
||||
{
|
||||
@@ -220,6 +223,45 @@ public:
|
||||
y = 0.0;
|
||||
AddMultTranspose(x, y);
|
||||
}
|
||||
|
||||
/** @brief For each face, sets @a y to the partial derivative of @a x with
|
||||
respect to the reference coordinate whose direction is
|
||||
perpendicular to the face on the reference element.
|
||||
|
||||
@details This is not the normal derivative in physical coordinates, but can
|
||||
be mapped to the physical normal derivative using the element
|
||||
Jacobian and the tangential derivatives (in reference coordinates)
|
||||
which can be computed from the face values (provided by Mult).
|
||||
|
||||
Note that due to the polynomial degree of the element mapping, the
|
||||
physical normal derivative may be a higher degree polynomial than
|
||||
the restriction of the values to the face. However, the normal
|
||||
derivative in reference coordinates has degree-1, and therefore can
|
||||
be exactly represented with the degrees of freedom of a face
|
||||
E-vector.
|
||||
|
||||
@param[in] x The L-vector degrees of freedom.
|
||||
@param[in,out] y The reference normal derivative degrees of freedom. Is
|
||||
E-vector like.
|
||||
*/
|
||||
virtual void NormalDerivativeMult(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_ABORT("Not implemented for this restriction operator.");
|
||||
}
|
||||
|
||||
/** @brief Add the face reference-normal derivative degrees of freedom in @a
|
||||
x to the element degrees of freedom in @a y.
|
||||
|
||||
@details see NormalDerivativeMult.
|
||||
|
||||
@param[in] x The degrees of freedom of the face reference-normal
|
||||
derivative. Is E-vector like.
|
||||
@param[in,out] y The L-vector degrees of freedom.
|
||||
*/
|
||||
virtual void NormalDerivativeAddMultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_ABORT("Not implemented for this restriction operator.");
|
||||
}
|
||||
};
|
||||
|
||||
/// @brief Operator that extracts face degrees of freedom for H1, ND, or RT
|
||||
@@ -365,6 +407,7 @@ class L2FaceRestriction : public FaceRestriction
|
||||
{
|
||||
protected:
|
||||
const FiniteElementSpace &fes;
|
||||
const ElementDofOrdering ordering;
|
||||
const int nf; // Number of faces of the requested type
|
||||
const int ne; // Number of elements
|
||||
const int vdim; // vdim
|
||||
@@ -379,6 +422,7 @@ protected:
|
||||
Array<int> scatter_indices2; // Scattering indices for element 2 on each face
|
||||
Array<int> gather_offsets; // offsets for the gathering indices of each dof
|
||||
Array<int> gather_indices; // gathering indices for each dof
|
||||
mutable std::unique_ptr<L2NormalDerivativeFaceRestriction> normal_deriv_restr;
|
||||
|
||||
/** @brief Constructs an L2FaceRestriction.
|
||||
|
||||
@@ -487,34 +531,49 @@ public:
|
||||
virtual void AddFaceMatricesToElementMatrices(const Vector &fea_data,
|
||||
Vector &ea_data) const;
|
||||
|
||||
/** @brief Scatter the degrees of freedom, i.e. goes from L-Vector to
|
||||
face E-Vector.
|
||||
|
||||
@param[in] x The L-vector degrees of freedom.
|
||||
@param[out] y The face E-Vector degrees of freedom with the given format:
|
||||
(face_dofs x vdim x 2 x nf) where nf is the number of
|
||||
interior or boundary faces requested by @a type in the
|
||||
constructor. The face_dofs are ordered according to the
|
||||
given ElementDofOrdering. */
|
||||
void NormalDerivativeMult(const Vector &x, Vector &y) const override;
|
||||
|
||||
/** @brief Add the face reference-normal derivative degrees of freedom in @a
|
||||
x to the element degrees of freedom in @a y.
|
||||
|
||||
@details see NormalDerivativeMult.
|
||||
|
||||
@param[in] x The degrees of freedom of the face reference-normal
|
||||
derivative. Is E-vector like.
|
||||
@param[in,out] y The L-vector degrees of freedom.
|
||||
*/
|
||||
void NormalDerivativeAddMultTranspose(const Vector &x,
|
||||
Vector &y) const override;
|
||||
private:
|
||||
/** @brief Compute the scatter indices: L-vector to E-vector, and the offsets
|
||||
for the gathering: E-vector to L-vector.
|
||||
|
||||
@param[in] f_ordering Request a specific face dof ordering.
|
||||
@param[in] type Request internal or boundary faces dofs.
|
||||
*/
|
||||
void ComputeScatterIndicesAndOffsets(const ElementDofOrdering f_ordering,
|
||||
const FaceType type);
|
||||
void ComputeScatterIndicesAndOffsets();
|
||||
|
||||
/** @brief Compute the gather indices: E-vector to L-vector.
|
||||
|
||||
Note: Requires the gather offsets to be computed.
|
||||
|
||||
@param[in] f_ordering Request a specific face dof ordering.
|
||||
@param[in] type Request internal or boundary faces dofs.
|
||||
*/
|
||||
void ComputeGatherIndices(const ElementDofOrdering f_ordering,
|
||||
const FaceType type);
|
||||
void ComputeGatherIndices();
|
||||
|
||||
/// Create the internal normal derivative restriction operator if needed.
|
||||
void EnsureNormalDerivativeRestriction() const;
|
||||
|
||||
protected:
|
||||
mutable Array<int> face_map; // Used in the computation of GetFaceDofs
|
||||
|
||||
/** @brief Verify that L2FaceRestriction is built from an L2 FESpace.
|
||||
|
||||
@param[in] f_ordering The requested face dof ordering.
|
||||
*/
|
||||
void CheckFESpace(const ElementDofOrdering f_ordering);
|
||||
void CheckFESpace();
|
||||
|
||||
/** @brief Set the scattering indices of elem1, and increment the offsets for
|
||||
the face described by the @a face. The ordering of the face dofs of elem1
|
||||
@@ -938,22 +997,14 @@ private:
|
||||
/** @brief Compute the scatter indices: L-vector to E-vector, the offsets
|
||||
for the gathering: E-vector to L-vector, and the interpolators from
|
||||
coarse to fine face for master non-comforming faces.
|
||||
|
||||
@param[in] f_ordering Request a specific face dof ordering.
|
||||
@param[in] type Request internal or boundary faces dofs.
|
||||
*/
|
||||
void ComputeScatterIndicesAndOffsets(const ElementDofOrdering f_ordering,
|
||||
const FaceType type);
|
||||
void ComputeScatterIndicesAndOffsets();
|
||||
|
||||
/** @brief Compute the gather indices: E-vector to L-vector.
|
||||
|
||||
Note: Requires the gather offsets to be computed.
|
||||
|
||||
@param[in] f_ordering Request a specific face dof ordering.
|
||||
@param[in] type Request internal or boundary faces dofs.
|
||||
*/
|
||||
void ComputeGatherIndices(const ElementDofOrdering f_ordering,
|
||||
const FaceType type);
|
||||
void ComputeGatherIndices();
|
||||
|
||||
public:
|
||||
/** @brief Scatter the degrees of freedom, i.e. goes from L-Vector to
|
||||
@@ -1015,7 +1066,6 @@ public:
|
||||
void DoubleValuedNonconformingTransposeInterpolationInPlace(Vector& x) const;
|
||||
};
|
||||
|
||||
|
||||
/** @brief Convert a dof face index from Native ordering to lexicographic
|
||||
ordering for quads and hexes.
|
||||
|
||||
@@ -1044,6 +1094,20 @@ int PermuteFaceL2(const int dim, const int face_id1,
|
||||
const int face_id2, const int orientation,
|
||||
const int size1d, const int index);
|
||||
|
||||
/// @brief Return the face-neighbor data given the L-vector @a x.
|
||||
///
|
||||
/// If the input vector @a x is a ParGridFunction with non-empty face-neighbor
|
||||
/// data, return an alias to ParGridFunction::FaceNbrData() (avoiding an
|
||||
/// unneeded call to ParGridFunction::ExchangeFaceNbrData).
|
||||
///
|
||||
/// Otherwise, create a temporary ParGridFunction, exchange the face-neighbor
|
||||
/// data, and return the resulting vector.
|
||||
///
|
||||
/// If @a fes is not a parallel space, or if @a ftype is not FaceType::Interior,
|
||||
/// return an empty vector.
|
||||
Vector GetLVectorFaceNbrData(
|
||||
const FiniteElementSpace &fes, const Vector &x, FaceType ftype);
|
||||
|
||||
}
|
||||
|
||||
#endif // MFEM_RESTRICTION
|
||||
|
||||
@@ -503,7 +503,7 @@ public:
|
||||
|
||||
Array<int> vdofs;
|
||||
const Array<int> *dof_map = sol_fe.GetDofMap();
|
||||
const int *dof_map_ = dof_map->GetData();
|
||||
const int *dof_map_ = (dof_map) ? dof_map->GetData() : NULL;
|
||||
DenseMatrix M_loc_perm(dofs*vdim,dofs*vdim); // initialized with zeros
|
||||
|
||||
const int NE = mesh.GetNE();
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user