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@@ -11,6 +11,9 @@
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Version 4.2.1 (development)
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===========================
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- Added high-order matrix-free auxiliary Maxwell solver for H(curl) problems,
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as described in Barker and Kolev 2020 (https://doi.org/10.1002/nla.2348).
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- Added matrix-free GPU-enabled implementations of GradientInterpolator and
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IdentityInterpolator.
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@@ -0,0 +1,435 @@
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// MFEM Example 3 - Parallel Version
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//
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// Compile with: make ex3p_complex
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//
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#include "mfem.hpp"
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#include <fstream>
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#include <iostream>
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using namespace std;
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using namespace mfem;
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// Exact solution, E, and r.h.s., f. See below for implementation.
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double E_exact(const Vector &);
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void gradE_exact(const Vector &, Vector &);
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double f_exact(const Vector &);
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double freq = 1.0, kappa;
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int dim;
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#define COMPLEX_VERSION
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#define NEUMANN
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const double omega = 1.4;
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const double eps = 1.0e-8;
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int main(int argc, char *argv[])
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{
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// 1. Initialize MPI.
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int num_procs, myid;
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MPI_Init(&argc, &argv);
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MPI_Comm_size(MPI_COMM_WORLD, &num_procs);
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MPI_Comm_rank(MPI_COMM_WORLD, &myid);
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// 2. Parse command-line options.
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const char *mesh_file = "../data/beam-tet.mesh";
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int order = 1;
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bool static_cond = false;
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bool pa = false;
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const char *device_config = "cpu";
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bool visualization = 1;
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OptionsParser args(argc, argv);
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args.AddOption(&mesh_file, "-m", "--mesh",
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"Mesh file to use.");
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args.AddOption(&order, "-o", "--order",
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"Finite element order (polynomial degree).");
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args.AddOption(&freq, "-f", "--frequency", "Set the frequency for the exact"
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" solution.");
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args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
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"--no-static-condensation", "Enable static condensation.");
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args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
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"--no-partial-assembly", "Enable Partial Assembly.");
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args.AddOption(&device_config, "-d", "--device",
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"Device configuration string, see Device::Configure().");
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args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
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"--no-visualization",
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"Enable or disable GLVis visualization.");
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args.Parse();
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if (!args.Good())
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{
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if (myid == 0)
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{
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args.PrintUsage(cout);
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}
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MPI_Finalize();
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return 1;
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}
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if (myid == 0)
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{
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args.PrintOptions(cout);
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}
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kappa = freq * M_PI;
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// 3. Enable hardware devices such as GPUs, and programming models such as
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// CUDA, OCCA, RAJA and OpenMP based on command line options.
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Device device(device_config);
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if (myid == 0) { device.Print(); }
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// 4. Read the (serial) mesh from the given mesh file on all processors. We
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// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
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// and volume meshes with the same code.
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Mesh *mesh = new Mesh(mesh_file, 1, 1);
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dim = mesh->Dimension();
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int sdim = mesh->SpaceDimension();
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// 5. Refine the serial mesh on all processors to increase the resolution. In
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// this example we do 'ref_levels' of uniform refinement. We choose
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// 'ref_levels' to be the largest number that gives a final mesh with no
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// more than 1,000 elements.
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{
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int ref_levels = (int)floor(log(1000./mesh->GetNE())/log(2.)/dim);
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for (int l = 0; l < ref_levels; l++)
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{
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mesh->UniformRefinement();
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}
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}
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// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
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// this mesh further in parallel to increase the resolution. Once the
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// parallel mesh is defined, the serial mesh can be deleted. Tetrahedral
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||||
// meshes need to be reoriented before we can define high-order Nedelec
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// spaces on them.
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ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
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||||
delete mesh;
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||||
{
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int par_ref_levels = 0;
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for (int l = 0; l < par_ref_levels; l++)
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{
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pmesh->UniformRefinement();
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}
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}
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pmesh->ReorientTetMesh();
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// 7. Define a parallel finite element space on the parallel mesh. Here we
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// use the Nedelec finite elements of the specified order.
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FiniteElementCollection *fec = new H1_FECollection(order, dim);
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ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
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HYPRE_Int size = fespace->GlobalTrueVSize();
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||||
if (myid == 0)
|
||||
{
|
||||
cout << "Number of finite element unknowns: " << size << endl;
|
||||
}
|
||||
|
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// 8. Determine the list of true (i.e. parallel conforming) essential
|
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// boundary dofs. In this example, the boundary conditions are defined
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// by marking all the boundary attributes from the mesh as essential
|
||||
// (Dirichlet) and converting them to a list of true dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
|
||||
#ifndef NEUMANN
|
||||
if (pmesh->bdr_attributes.Size())
|
||||
{
|
||||
Array<int> ess_bdr(pmesh->bdr_attributes.Max());
|
||||
ess_bdr = 1;
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||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
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||||
}
|
||||
#endif
|
||||
|
||||
//const double imscale = 0.0;
|
||||
const double imscale = -omega;
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|
||||
Coefficient *im = new ConstantCoefficient(imscale); // im part
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||||
//Coefficient *im = new ConstantCoefficient(0.0); // im part
|
||||
|
||||
FunctionCoefficient E_coef(E_exact);
|
||||
VectorFunctionCoefficient grad_E(sdim, gradE_exact);
|
||||
ProductCoefficient omegaE(imscale, E_coef);
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||||
|
||||
// 9. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system, which in this case is
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// (f,phi_i) where f is given by the function f_exact and phi_i are the
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// basis functions in the finite element fespace.
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FunctionCoefficient f(f_exact);
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#ifdef COMPLEX_VERSION
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ParComplexLinearForm *b = new ParComplexLinearForm(fespace);
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b->AddDomainIntegrator(new DomainLFIntegrator(f), NULL);
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#ifdef NEUMANN
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b->AddBoundaryIntegrator(NULL, new BoundaryNormalLFIntegrator(grad_E));
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#endif
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b->AddBoundaryIntegrator(NULL, new BoundaryLFIntegrator(omegaE)); // im part
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#endif
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b->Assemble();
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||||
// 10. Define the solution vector x as a parallel finite element grid function
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// corresponding to fespace. Initialize x by projecting the exact
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// solution. Note that only values from the boundary edges will be used
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// when eliminating the non-homogeneous boundary condition to modify the
|
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// r.h.s. vector b.
|
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/*
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ParGridFunction x(fespace);
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VectorFunctionCoefficient E(sdim, E_exact);
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x.ProjectCoefficient(E);
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*/
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#ifdef COMPLEX_VERSION
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// Complex version
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ParComplexGridFunction x(fespace);
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x = 0.0;
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ConstantCoefficient E_im(0.0);
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//x.ProjectBdrCoefficientTangent(E_Re, E_Im, ess_bdr);
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x.ProjectCoefficient(E_coef, E_im);
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#endif
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||||
// 11. Set up the parallel bilinear form corresponding to the EM diffusion
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||||
// operator curl muinv curl + sigma I, by adding the curl-curl and the
|
||||
// mass domain integrators.
|
||||
Coefficient *muinv = new ConstantCoefficient(1.0);
|
||||
Coefficient *epscoef = new ConstantCoefficient(eps);
|
||||
Coefficient *imabs = new ConstantCoefficient(fabs(imscale)); // im part
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||||
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||||
#ifdef COMPLEX_VERSION
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||||
// Complex version
|
||||
ParSesquilinearForm *a = new ParSesquilinearForm(fespace);
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if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
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a->AddDomainIntegrator(new DiffusionIntegrator(*muinv), NULL);
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a->AddDomainIntegrator(new MassIntegrator(*epscoef), NULL);
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a->AddBoundaryIntegrator(NULL, new MassIntegrator(*im)); // im part
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#endif
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||||
|
||||
// 12. Assemble the parallel bilinear form and the corresponding linear
|
||||
// system, applying any necessary transformations such as: parallel
|
||||
// assembly, eliminating boundary conditions, applying conforming
|
||||
// constraints for non-conforming AMR, static condensation, etc.
|
||||
//if (static_cond) { a->EnableStaticCondensation(); }
|
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a->Assemble();
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OperatorPtr A;
|
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Vector B, X;
|
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a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
|
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|
||||
ParBilinearForm a_Re(fespace);
|
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a_Re.AddDomainIntegrator(new DiffusionIntegrator(*muinv));
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a_Re.AddDomainIntegrator(new MassIntegrator(*epscoef));
|
||||
|
||||
if (pa) { a_Re.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a_Re.Assemble();
|
||||
|
||||
OperatorPtr A_Re;
|
||||
a_Re.FormSystemMatrix(ess_tdof_list, A_Re);
|
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|
||||
ParBilinearForm a_Im(fespace);
|
||||
a_Im.AddBoundaryIntegrator(new MassIntegrator(*imabs));
|
||||
a_Im.Assemble();
|
||||
|
||||
OperatorPtr A_Im;
|
||||
a_Im.FormSystemMatrix(ess_tdof_list, A_Im);
|
||||
|
||||
// 13. Solve the system AX=B using PCG with the AMS preconditioner from hypre
|
||||
// (in the full assembly case) or CG with Jacobi preconditioner (in the
|
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// partial assembly case).
|
||||
|
||||
Array<int> offsets(3);
|
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offsets[0] = 0;
|
||||
offsets[1] = fespace->GetTrueVSize();
|
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offsets[2] = fespace->GetTrueVSize();
|
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offsets.PartialSum();
|
||||
|
||||
//OperatorJacobiSmoother massJacobi(a_Im, ess_tdof_list);
|
||||
|
||||
StopWatch sw;
|
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sw.Clear();
|
||||
sw.Start();
|
||||
|
||||
if (pa) // Jacobi preconditioning in partial assembly mode
|
||||
{
|
||||
MFEM_VERIFY(false, "TODO");
|
||||
//OperatorJacobiSmoother Jacobi(*a, ess_tdof_list);
|
||||
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(1000);
|
||||
cg.SetPrintLevel(1);
|
||||
cg.SetOperator(*A);
|
||||
//cg.SetPreconditioner(Jacobi);
|
||||
cg.Mult(B, X);
|
||||
}
|
||||
else
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Size of linear system: "
|
||||
<< A.As<HypreParMatrix>()->GetGlobalNumRows() << endl;
|
||||
}
|
||||
|
||||
HypreBoomerAMG amg(*A_Re.As<HypreParMatrix>());
|
||||
|
||||
#ifdef COMPLEX_VERSION
|
||||
BlockDiagonalPreconditioner BlockDP(offsets);
|
||||
BlockDP.SetDiagonalBlock(0, &amg);
|
||||
BlockDP.SetDiagonalBlock(1, &amg);
|
||||
|
||||
Complex_PMHSS PMHSS(A_Re.Ptr(), A_Im.Ptr(), &BlockDP, NULL, 1.0);
|
||||
|
||||
ComplexOperator AspdComplex(A_Re.Ptr(), A_Im.Ptr(), false, false);
|
||||
|
||||
GMRESSolver PMHSSgmres(MPI_COMM_WORLD);
|
||||
PMHSSgmres.SetPrintLevel(1);
|
||||
PMHSSgmres.SetKDim(100);
|
||||
PMHSSgmres.SetMaxIter(100);
|
||||
PMHSSgmres.SetRelTol(1e-6);
|
||||
PMHSSgmres.SetAbsTol(0.0);
|
||||
PMHSSgmres.SetOperator(AspdComplex);
|
||||
PMHSSgmres.SetPreconditioner(PMHSS);
|
||||
|
||||
GMRESSolver gmres(MPI_COMM_WORLD);
|
||||
gmres.SetPrintLevel(1);
|
||||
gmres.SetKDim(1000);
|
||||
gmres.SetMaxIter(100);
|
||||
gmres.SetRelTol(1e-8);
|
||||
gmres.SetAbsTol(0.0);
|
||||
gmres.SetOperator(*A);
|
||||
//gmres.SetPreconditioner(BlockDP);
|
||||
gmres.SetPreconditioner(PMHSS);
|
||||
//gmres.SetPreconditioner(PMHSSgmres);
|
||||
#else
|
||||
GMRESSolver gmres(MPI_COMM_WORLD);
|
||||
gmres.SetPrintLevel(1);
|
||||
gmres.SetKDim(1000);
|
||||
gmres.SetMaxIter(100);
|
||||
gmres.SetRelTol(1e-8);
|
||||
gmres.SetAbsTol(0.0);
|
||||
gmres.SetOperator(*A);
|
||||
gmres.SetPreconditioner(ams);
|
||||
#endif
|
||||
|
||||
gmres.Mult(B, X);
|
||||
}
|
||||
|
||||
sw.Stop();
|
||||
mfem::out << "Total solve time " <<sw.RealTime() << endl;
|
||||
|
||||
// 14. Recover the parallel grid function corresponding to X. This is the
|
||||
// local finite element solution on each processor.
|
||||
a->RecoverFEMSolution(X, *b, x);
|
||||
|
||||
// 15. Compute and print the L^2 norm of the error.
|
||||
{
|
||||
#ifdef COMPLEX_VERSION
|
||||
double err = x.real().ComputeL2Error(E_coef);
|
||||
#else
|
||||
double err = x.ComputeL2Error(E_coef);
|
||||
#endif
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "\n|| E_h - E ||_{L^2} = " << err << '\n' << endl;
|
||||
}
|
||||
}
|
||||
|
||||
// 16. Save the refined mesh and the solution in parallel. This output can
|
||||
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
|
||||
{
|
||||
ostringstream mesh_name, sol_name;
|
||||
mesh_name << "mesh." << setfill('0') << setw(6) << myid;
|
||||
sol_name << "sol." << setfill('0') << setw(6) << myid;
|
||||
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(8);
|
||||
pmesh->Print(mesh_ofs);
|
||||
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(8);
|
||||
#ifdef COMPLEX_VERSION
|
||||
x.real().Save(sol_ofs);
|
||||
#else
|
||||
x.Save(sol_ofs);
|
||||
#endif
|
||||
}
|
||||
|
||||
// 17. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock.precision(8);
|
||||
#ifdef COMPLEX_VERSION
|
||||
sol_sock << "solution\n" << *pmesh << x.real() << flush;
|
||||
#else
|
||||
sol_sock << "solution\n" << *pmesh << x << flush;
|
||||
#endif
|
||||
}
|
||||
|
||||
// 18. Free the used memory.
|
||||
delete a;
|
||||
delete muinv;
|
||||
delete b;
|
||||
delete fespace;
|
||||
delete fec;
|
||||
delete pmesh;
|
||||
|
||||
MPI_Finalize();
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
#define VERSION_COS
|
||||
|
||||
double E_exact(const Vector &x)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
#ifdef VERSION_COS
|
||||
return cos(kappa * x(0)) * cos(kappa * x(1)) * cos(kappa * x(2));
|
||||
#else
|
||||
return sin(kappa * x(0)) * sin(kappa * x(1)) * sin(kappa * x(2));
|
||||
#endif
|
||||
}
|
||||
else
|
||||
{
|
||||
return 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
void gradE_exact(const Vector &x, Vector &grad)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
#ifdef VERSION_COS
|
||||
grad(0) = -kappa * sin(kappa * x(0)) * cos(kappa * x(1)) * cos(kappa * x(2));
|
||||
grad(1) = -kappa * sin(kappa * x(1)) * cos(kappa * x(0)) * cos(kappa * x(2));
|
||||
grad(2) = -kappa * sin(kappa * x(2)) * cos(kappa * x(0)) * cos(kappa * x(1));
|
||||
#else
|
||||
grad(0) = kappa * cos(kappa * x(0)) * sin(kappa * x(1)) * sin(kappa * x(2));
|
||||
grad(1) = kappa * cos(kappa * x(1)) * sin(kappa * x(0)) * sin(kappa * x(2));
|
||||
grad(2) = kappa * cos(kappa * x(2)) * sin(kappa * x(0)) * sin(kappa * x(1));
|
||||
#endif
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_VERIFY(false, "");
|
||||
}
|
||||
}
|
||||
|
||||
// (grad u, grad v) + eps (u, v) = <grad u . n, v> - (div grad u, v) + eps (u, v)
|
||||
double f_exact(const Vector &x)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
const double c = 3.0 * kappa * kappa;
|
||||
#ifdef VERSION_COS
|
||||
return (eps + c) * cos(kappa * x(0)) * cos(kappa * x(1)) * cos(kappa * x(2));
|
||||
#else
|
||||
return (eps + c) * sin(kappa * x(0)) * sin(kappa * x(1)) * sin(kappa * x(2));
|
||||
#endif
|
||||
}
|
||||
else
|
||||
{
|
||||
return 0.0;
|
||||
}
|
||||
}
|
||||
+19
-10
@@ -69,7 +69,10 @@ int main(int argc, char *argv[])
|
||||
bool static_cond = false;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = 1;
|
||||
bool visualization = true;
|
||||
#ifdef MFEM_USE_AMGX
|
||||
bool useAmgX = false;
|
||||
#endif
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -87,6 +90,11 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
#ifdef MFEM_USE_AMGX
|
||||
args.AddOption(&useAmgX, "-amgx", "--useAmgX", "-no-amgx",
|
||||
"--no-useAmgX",
|
||||
"Enable or disable AmgX in MatrixFreeAMS.");
|
||||
#endif
|
||||
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
@@ -159,9 +167,10 @@ int main(int argc, char *argv[])
|
||||
// by marking all the boundary attributes from the mesh as essential
|
||||
// (Dirichlet) and converting them to a list of true dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
Array<int> ess_bdr;
|
||||
if (pmesh->bdr_attributes.Size())
|
||||
{
|
||||
Array<int> ess_bdr(pmesh->bdr_attributes.Max());
|
||||
ess_bdr.SetSize(pmesh->bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
@@ -205,20 +214,20 @@ int main(int argc, char *argv[])
|
||||
Vector B, X;
|
||||
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
|
||||
|
||||
// 13. Solve the system AX=B using PCG with the AMS preconditioner from hypre
|
||||
// (in the full assembly case) or CG with Jacobi preconditioner (in the
|
||||
// partial assembly case).
|
||||
|
||||
if (pa) // Jacobi preconditioning in partial assembly mode
|
||||
// 13. Solve the system AX=B using PCG with an AMS preconditioner.
|
||||
if (pa)
|
||||
{
|
||||
OperatorJacobiSmoother Jacobi(*a, ess_tdof_list);
|
||||
|
||||
#ifdef MFEM_USE_AMGX
|
||||
MatrixFreeAMS ams(*a, *A, *fespace, muinv, sigma, NULL, ess_bdr, useAmgX);
|
||||
#else
|
||||
MatrixFreeAMS ams(*a, *A, *fespace, muinv, sigma, NULL, ess_bdr);
|
||||
#endif
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(1000);
|
||||
cg.SetPrintLevel(1);
|
||||
cg.SetOperator(*A);
|
||||
cg.SetPreconditioner(Jacobi);
|
||||
cg.SetPreconditioner(ams);
|
||||
cg.Mult(B, X);
|
||||
}
|
||||
else
|
||||
|
||||
@@ -0,0 +1,517 @@
|
||||
// MFEM Example 3 - Parallel Version
|
||||
//
|
||||
// Compile with: make ex3p_complex
|
||||
//
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
// Exact solution, E, and r.h.s., f. See below for implementation.
|
||||
void E_exact(const Vector &, Vector &);
|
||||
void curlE_exact(const Vector &, Vector &);
|
||||
void f_exact(const Vector &, Vector &);
|
||||
double freq = 1.0, kappa;
|
||||
int dim;
|
||||
|
||||
|
||||
#define COMPLEX_VERSION
|
||||
#define NEUMANN
|
||||
#define INDEFINITE
|
||||
|
||||
const double omega = 1.4;
|
||||
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Initialize MPI.
|
||||
int num_procs, myid;
|
||||
MPI_Init(&argc, &argv);
|
||||
MPI_Comm_size(MPI_COMM_WORLD, &num_procs);
|
||||
MPI_Comm_rank(MPI_COMM_WORLD, &myid);
|
||||
|
||||
// 2. Parse command-line options.
|
||||
const char *mesh_file = "../data/beam-tet.mesh";
|
||||
int order = 1;
|
||||
bool static_cond = false;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = 1;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&freq, "-f", "--frequency", "Set the frequency for the exact"
|
||||
" solution.");
|
||||
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
}
|
||||
MPI_Finalize();
|
||||
return 1;
|
||||
}
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
kappa = freq * M_PI;
|
||||
|
||||
// 3. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
if (myid == 0) { device.Print(); }
|
||||
|
||||
// 4. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
|
||||
// and volume meshes with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
dim = mesh->Dimension();
|
||||
int sdim = mesh->SpaceDimension();
|
||||
|
||||
// 5. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// this example we do 'ref_levels' of uniform refinement. We choose
|
||||
// 'ref_levels' to be the largest number that gives a final mesh with no
|
||||
// more than 1,000 elements.
|
||||
{
|
||||
int ref_levels = (int)floor(log(1000./mesh->GetNE())/log(2.)/dim);
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted. Tetrahedral
|
||||
// meshes need to be reoriented before we can define high-order Nedelec
|
||||
// spaces on them.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
delete mesh;
|
||||
{
|
||||
int par_ref_levels = 0;
|
||||
for (int l = 0; l < par_ref_levels; l++)
|
||||
{
|
||||
pmesh->UniformRefinement();
|
||||
}
|
||||
}
|
||||
pmesh->ReorientTetMesh();
|
||||
|
||||
// 7. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use the Nedelec finite elements of the specified order.
|
||||
FiniteElementCollection *fec = new ND_FECollection(order, dim);
|
||||
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
|
||||
HYPRE_Int size = fespace->GlobalTrueVSize();
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Number of finite element unknowns: " << size << endl;
|
||||
}
|
||||
|
||||
// 8. Determine the list of true (i.e. parallel conforming) essential
|
||||
// boundary dofs. In this example, the boundary conditions are defined
|
||||
// by marking all the boundary attributes from the mesh as essential
|
||||
// (Dirichlet) and converting them to a list of true dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
Array<int> ess_bdr;
|
||||
ess_bdr.SetSize(pmesh->bdr_attributes.Max());
|
||||
ess_bdr = 0;
|
||||
|
||||
#ifndef NEUMANN
|
||||
if (pmesh->bdr_attributes.Size())
|
||||
{
|
||||
ess_bdr = 1;
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
#endif
|
||||
|
||||
//const double imscale = 0.0;
|
||||
const double imscale = omega;
|
||||
|
||||
Coefficient *im = new ConstantCoefficient(imscale); // im part
|
||||
//Coefficient *im = new ConstantCoefficient(0.0); // im part
|
||||
|
||||
VectorFunctionCoefficient E_Re(sdim, E_exact);
|
||||
VectorFunctionCoefficient curlE_Re(sdim, curlE_exact);
|
||||
|
||||
ScalarVectorProductCoefficient omegaE(imscale, E_Re); // im part
|
||||
//ScalarVectorProductCoefficient omegaE(0.0, E_Re); // im part
|
||||
|
||||
// 9. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system, which in this case is
|
||||
// (f,phi_i) where f is given by the function f_exact and phi_i are the
|
||||
// basis functions in the finite element fespace.
|
||||
VectorFunctionCoefficient f(sdim, f_exact);
|
||||
#ifdef COMPLEX_VERSION
|
||||
ParComplexLinearForm *b = new ParComplexLinearForm(fespace);
|
||||
b->AddDomainIntegrator(new VectorFEDomainLFIntegrator(f), NULL);
|
||||
b->AddBoundaryIntegrator(NULL,
|
||||
new VectorFEDomainLFIntegrator(omegaE)); // im part
|
||||
#else
|
||||
// Real version
|
||||
ParLinearForm *b = new ParLinearForm(fespace);
|
||||
b->AddDomainIntegrator(new VectorFEDomainLFIntegrator(f));
|
||||
#endif
|
||||
|
||||
#ifdef NEUMANN
|
||||
b->AddBoundaryIntegrator(new VectorFEBoundaryTangentLFIntegrator(curlE_Re),
|
||||
NULL);
|
||||
#endif
|
||||
|
||||
b->Assemble();
|
||||
|
||||
// 10. Define the solution vector x as a parallel finite element grid function
|
||||
// corresponding to fespace. Initialize x by projecting the exact
|
||||
// solution. Note that only values from the boundary edges will be used
|
||||
// when eliminating the non-homogeneous boundary condition to modify the
|
||||
// r.h.s. vector b.
|
||||
/*
|
||||
ParGridFunction x(fespace);
|
||||
VectorFunctionCoefficient E(sdim, E_exact);
|
||||
x.ProjectCoefficient(E);
|
||||
*/
|
||||
|
||||
#ifdef COMPLEX_VERSION
|
||||
// Complex version
|
||||
ParComplexGridFunction x(fespace);
|
||||
x = 0.0;
|
||||
Vector zero(sdim);
|
||||
zero = 0.0;
|
||||
VectorConstantCoefficient E_Im(zero);
|
||||
//x.ProjectBdrCoefficientTangent(E_Re, E_Im, ess_bdr);
|
||||
x.ProjectCoefficient(E_Re, E_Im);
|
||||
#else
|
||||
ParGridFunction x(fespace);
|
||||
x = 0.0;
|
||||
x.ProjectCoefficient(E_Re);
|
||||
#endif
|
||||
|
||||
// 11. Set up the parallel bilinear form corresponding to the EM diffusion
|
||||
// operator curl muinv curl + sigma I, by adding the curl-curl and the
|
||||
// mass domain integrators.
|
||||
Coefficient *muinv = new ConstantCoefficient(1.0);
|
||||
#ifdef INDEFINITE
|
||||
Coefficient *sigma = new ConstantCoefficient(
|
||||
-omega*omega); // indefinite -, definite +
|
||||
#else
|
||||
Coefficient *sigma = new ConstantCoefficient(
|
||||
omega*omega); // indefinite -, definite +
|
||||
#endif
|
||||
Coefficient *abssigma = new ConstantCoefficient(omega*omega);
|
||||
Coefficient *imabs = new ConstantCoefficient(imscale); // im part
|
||||
//Coefficient *imabs = new ConstantCoefficient(0.0); // im part
|
||||
//Coefficient *im = new ConstantCoefficient(0.0);
|
||||
|
||||
#ifdef COMPLEX_VERSION
|
||||
// Complex version
|
||||
ParSesquilinearForm *a = new ParSesquilinearForm(fespace);
|
||||
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a->AddDomainIntegrator(new CurlCurlIntegrator(*muinv), NULL);
|
||||
//a->AddDomainIntegrator(new VectorFEMassIntegrator(*sigma), new VectorFEMassIntegrator(*im));
|
||||
a->AddDomainIntegrator(new VectorFEMassIntegrator(*sigma), NULL);
|
||||
a->AddBoundaryIntegrator(NULL, new VectorFEMassIntegrator(*im)); // im part
|
||||
#else
|
||||
// Real version
|
||||
ParBilinearForm *a = new ParBilinearForm(fespace);
|
||||
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a->AddDomainIntegrator(new CurlCurlIntegrator(*muinv));
|
||||
//a->AddDomainIntegrator(new VectorFEMassIntegrator(*sigma), new VectorFEMassIntegrator(*im));
|
||||
a->AddDomainIntegrator(new VectorFEMassIntegrator(*sigma));
|
||||
#endif
|
||||
|
||||
// 12. Assemble the parallel bilinear form and the corresponding linear
|
||||
// system, applying any necessary transformations such as: parallel
|
||||
// assembly, eliminating boundary conditions, applying conforming
|
||||
// constraints for non-conforming AMR, static condensation, etc.
|
||||
//if (static_cond) { a->EnableStaticCondensation(); }
|
||||
a->Assemble();
|
||||
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
|
||||
|
||||
ParBilinearForm a_Re(fespace);
|
||||
a_Re.AddDomainIntegrator(new CurlCurlIntegrator(*muinv));
|
||||
a_Re.AddDomainIntegrator(new VectorFEMassIntegrator(*abssigma));
|
||||
|
||||
//if (pa) { a_Re.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a_Re.SetAssemblyLevel(AssemblyLevel::PARTIAL);
|
||||
a_Re.Assemble();
|
||||
|
||||
OperatorPtr A_Re;
|
||||
a_Re.FormSystemMatrix(ess_tdof_list, A_Re);
|
||||
|
||||
ParBilinearForm a_Im(fespace);
|
||||
a_Im.AddBoundaryIntegrator(new VectorFEMassIntegrator(*imabs));
|
||||
a_Im.Assemble();
|
||||
|
||||
OperatorPtr A_Im;
|
||||
a_Im.FormSystemMatrix(ess_tdof_list, A_Im);
|
||||
|
||||
// 13. Solve the system AX=B using PCG with the AMS preconditioner from hypre
|
||||
// (in the full assembly case) or CG with Jacobi preconditioner (in the
|
||||
// partial assembly case).
|
||||
|
||||
Array<int> offsets(3);
|
||||
offsets[0] = 0;
|
||||
offsets[1] = fespace->GetTrueVSize();
|
||||
offsets[2] = fespace->GetTrueVSize();
|
||||
offsets.PartialSum();
|
||||
|
||||
//OperatorJacobiSmoother massJacobi(a_Im, ess_tdof_list);
|
||||
|
||||
StopWatch sw;
|
||||
sw.Clear();
|
||||
sw.Start();
|
||||
|
||||
if (pa) // Jacobi preconditioning in partial assembly mode
|
||||
{
|
||||
MFEM_VERIFY(false, "TODO");
|
||||
//OperatorJacobiSmoother Jacobi(*a, ess_tdof_list);
|
||||
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(1000);
|
||||
cg.SetPrintLevel(1);
|
||||
cg.SetOperator(*A);
|
||||
//cg.SetPreconditioner(Jacobi);
|
||||
cg.Mult(B, X);
|
||||
}
|
||||
else
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Size of linear system: "
|
||||
<< A.As<HypreParMatrix>()->GetGlobalNumRows() << endl;
|
||||
}
|
||||
|
||||
//HypreAMS ams(*A_Re.As<HypreParMatrix>(), fespace);
|
||||
|
||||
// One option is to use the standard real-valued MatrixFreeAMS to precondition
|
||||
// the real part of the complex system in the PMHSS preconditioner (BlockDiagonalPreconditioner).
|
||||
// Another option is to use complex MatrixFreeAMS to precondition the
|
||||
// complex system without PMHSS and without a BlockDiagonalPreconditioner.
|
||||
//#define COMPLEX_AMS
|
||||
|
||||
#ifdef MFEM_USE_AMGX
|
||||
bool useAmgX = false;
|
||||
cout << "Built with AMGX, using AMGX " << useAmgX << endl;
|
||||
MatrixFreeAMS ams(a_Re, *A_Re, *fespace, muinv, abssigma, im, imabs, NULL,
|
||||
ess_bdr, useAmgX);
|
||||
MatrixFreeAMS ams(a_Re, *A_Re, *fespace, muinv, abssigma, NULL, NULL, ess_bdr,
|
||||
useAmgX);
|
||||
#ifdef COMPLEX_AMS
|
||||
MFEM_VERIFY(false, "TODO");
|
||||
#endif
|
||||
|
||||
#else
|
||||
cout << "Not built with AMGX" << endl;
|
||||
#ifdef COMPLEX_AMS
|
||||
MatrixFreeAMS ams(a_Re, *A_Re, A.Ptr(), *fespace, muinv, abssigma, im, imabs,
|
||||
NULL, ess_bdr);
|
||||
#else
|
||||
MatrixFreeAMS ams(a_Re, *A_Re, NULL, *fespace, muinv, abssigma, NULL, NULL,
|
||||
NULL, ess_bdr);
|
||||
#endif
|
||||
#endif
|
||||
|
||||
#ifdef COMPLEX_VERSION
|
||||
|
||||
#ifdef COMPLEX_AMS
|
||||
//MFEM_VERIFY(false, "TODO");
|
||||
#else
|
||||
BlockDiagonalPreconditioner BlockDP(offsets);
|
||||
BlockDP.SetDiagonalBlock(0, &ams);
|
||||
BlockDP.SetDiagonalBlock(1, &ams);
|
||||
|
||||
/*
|
||||
BlockDiagonalPreconditioner BlockDP_Im(offsets);
|
||||
BlockDP_Im.SetDiagonalBlock(0, &massJacobi); // TODO: this won't work if it has zeros on diagonal
|
||||
BlockDP_Im.SetDiagonalBlock(1, &massJacobi);
|
||||
*/
|
||||
|
||||
//Complex_PMHSS PMHSS(A_Re, A_Im, &BlockDP, &BlockDP_Im);
|
||||
//Complex_PMHSS PMHSS(A_Re, A_Im, &BlockDP, NULL, 2.0 * omega);
|
||||
//Complex_PMHSS PMHSS(A_Re, A_Im, &BlockDP, NULL, omega);
|
||||
Complex_PMHSS PMHSS(A_Re.Ptr(), A_Im.Ptr(), &BlockDP, NULL, 1.0);
|
||||
|
||||
ComplexOperator AspdComplex(A_Re.Ptr(), A_Im.Ptr(), false, false);
|
||||
|
||||
GMRESSolver PMHSSgmres(MPI_COMM_WORLD);
|
||||
PMHSSgmres.SetPrintLevel(1);
|
||||
PMHSSgmres.SetKDim(100);
|
||||
PMHSSgmres.SetMaxIter(100);
|
||||
PMHSSgmres.SetRelTol(1e-6);
|
||||
PMHSSgmres.SetAbsTol(0.0);
|
||||
PMHSSgmres.SetOperator(AspdComplex);
|
||||
PMHSSgmres.SetPreconditioner(PMHSS);
|
||||
#endif
|
||||
|
||||
GMRESSolver gmres(MPI_COMM_WORLD);
|
||||
gmres.SetPrintLevel(1);
|
||||
gmres.SetKDim(1000);
|
||||
gmres.SetMaxIter(100);
|
||||
gmres.SetRelTol(1e-8);
|
||||
gmres.SetAbsTol(0.0);
|
||||
gmres.SetOperator(*A);
|
||||
//gmres.SetPreconditioner(BlockDP);
|
||||
#ifdef COMPLEX_AMS
|
||||
//MFEM_VERIFY(false, "TODO");
|
||||
gmres.SetPreconditioner(ams);
|
||||
#else
|
||||
gmres.SetPreconditioner(PMHSS);
|
||||
//gmres.SetPreconditioner(PMHSSgmres);
|
||||
#endif
|
||||
|
||||
#else
|
||||
GMRESSolver gmres(MPI_COMM_WORLD);
|
||||
gmres.SetPrintLevel(1);
|
||||
gmres.SetKDim(1000);
|
||||
gmres.SetMaxIter(100);
|
||||
gmres.SetRelTol(1e-8);
|
||||
gmres.SetAbsTol(0.0);
|
||||
gmres.SetOperator(*A);
|
||||
gmres.SetPreconditioner(ams);
|
||||
#endif
|
||||
|
||||
gmres.Mult(B, X);
|
||||
}
|
||||
|
||||
sw.Stop();
|
||||
mfem::out << "Total solve time " <<sw.RealTime() << endl;
|
||||
|
||||
// 14. Recover the parallel grid function corresponding to X. This is the
|
||||
// local finite element solution on each processor.
|
||||
a->RecoverFEMSolution(X, *b, x);
|
||||
|
||||
// 15. Compute and print the L^2 norm of the error.
|
||||
{
|
||||
#ifdef COMPLEX_VERSION
|
||||
double err = x.real().ComputeL2Error(E_Re);
|
||||
#else
|
||||
double err = x.ComputeL2Error(E_Re);
|
||||
#endif
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "\n|| E_h - E ||_{L^2} = " << err << '\n' << endl;
|
||||
}
|
||||
}
|
||||
|
||||
// 16. Save the refined mesh and the solution in parallel. This output can
|
||||
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
|
||||
{
|
||||
ostringstream mesh_name, sol_name;
|
||||
mesh_name << "mesh." << setfill('0') << setw(6) << myid;
|
||||
sol_name << "sol." << setfill('0') << setw(6) << myid;
|
||||
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(8);
|
||||
pmesh->Print(mesh_ofs);
|
||||
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(8);
|
||||
#ifdef COMPLEX_VERSION
|
||||
x.real().Save(sol_ofs);
|
||||
#else
|
||||
x.Save(sol_ofs);
|
||||
#endif
|
||||
}
|
||||
|
||||
// 17. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock.precision(8);
|
||||
#ifdef COMPLEX_VERSION
|
||||
sol_sock << "solution\n" << *pmesh << x.real() << flush;
|
||||
#else
|
||||
sol_sock << "solution\n" << *pmesh << x << flush;
|
||||
#endif
|
||||
}
|
||||
|
||||
// 18. Free the used memory.
|
||||
delete a;
|
||||
delete sigma;
|
||||
delete muinv;
|
||||
delete b;
|
||||
delete fespace;
|
||||
delete fec;
|
||||
delete pmesh;
|
||||
|
||||
MPI_Finalize();
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
|
||||
void E_exact(const Vector &x, Vector &E)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
E(0) = sin(kappa * x(1));
|
||||
E(1) = sin(kappa * x(2));
|
||||
E(2) = sin(kappa * x(0));
|
||||
}
|
||||
else
|
||||
{
|
||||
E(0) = sin(kappa * x(1));
|
||||
E(1) = sin(kappa * x(0));
|
||||
if (x.Size() == 3) { E(2) = 0.0; }
|
||||
}
|
||||
}
|
||||
|
||||
void curlE_exact(const Vector &x, Vector &curl)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
curl(0) = kappa * cos(kappa * x(2));
|
||||
curl(1) = kappa * cos(kappa * x(0));
|
||||
curl(2) = kappa * cos(kappa * x(1));
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_VERIFY(false, "");
|
||||
}
|
||||
}
|
||||
|
||||
void f_exact(const Vector &x, Vector &f)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
// indefinite -m, definite +m
|
||||
const double c = kappa * kappa;
|
||||
#ifdef INDEFINITE
|
||||
const double m = -omega * omega;
|
||||
#else
|
||||
const double m = omega * omega;
|
||||
#endif
|
||||
f(0) = (c + m) * sin(kappa * x(1));
|
||||
f(1) = (c + m) * sin(kappa * x(2));
|
||||
f(2) = (c + m) * sin(kappa * x(0));
|
||||
}
|
||||
else
|
||||
{
|
||||
f(0) = (1. + kappa * kappa) * sin(kappa * x(1));
|
||||
f(1) = (1. + kappa * kappa) * sin(kappa * x(0));
|
||||
if (x.Size() == 3) { f(2) = 0.0; }
|
||||
}
|
||||
}
|
||||
@@ -10,6 +10,7 @@
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
list(APPEND SRCS
|
||||
auxiliary.cpp
|
||||
blockmatrix.cpp
|
||||
blockoperator.cpp
|
||||
blockvector.cpp
|
||||
@@ -27,6 +28,7 @@ list(APPEND SRCS
|
||||
)
|
||||
|
||||
list(APPEND HDRS
|
||||
auxiliary.hpp
|
||||
blockmatrix.hpp
|
||||
blockoperator.hpp
|
||||
blockvector.hpp
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,285 @@
|
||||
// Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_AUXILIARY
|
||||
#define MFEM_AUXILIARY
|
||||
|
||||
#include "../config/config.hpp"
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
|
||||
#include "../general/tic_toc.hpp"
|
||||
#include "solvers.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// forward declarations
|
||||
class Coefficient;
|
||||
class MatrixCoefficient;
|
||||
class ParMesh;
|
||||
class ParBilinearForm;
|
||||
class ParDiscreteLinearOperator;
|
||||
|
||||
/** @brief Auxiliary space solvers for MatrixFreeAMS preconditioner
|
||||
|
||||
Given an operator A and a transfer G, this will create a solver
|
||||
that approximates (G^T A G)^{-1}. Used for two different
|
||||
auxiliary spaces in the AMS cycle.
|
||||
|
||||
The produced solver is based on a low-order refined discretization
|
||||
for the high-order H1 problem. */
|
||||
class MatrixFreeAuxiliarySpace : public Solver
|
||||
{
|
||||
public:
|
||||
/** @brief Pi space constructor
|
||||
|
||||
In the AMS framework this auxiliary space has two coefficients.
|
||||
|
||||
@param mesh_lor Low-order refined auxiliary mesh
|
||||
@param alpha_coeff coefficient on curl-curl term (1 if null)
|
||||
@param beta_coeff coefficient on mass term (1 if null)
|
||||
@param beta_mcoeff matrix coefficient on mass term
|
||||
@param ess_bdr attributes for essential boundaries
|
||||
@param curlcurl_oper High-order operator for the system
|
||||
@param pi Intentity interpolation operator
|
||||
@param useAmgX_ Use AmgX instead of hypre for auxiliary solves
|
||||
@param cg_iterations number of CG iterations used to invert
|
||||
auxiliary system, choosing 0 means to use a
|
||||
single V-cycle
|
||||
*/
|
||||
MatrixFreeAuxiliarySpace(
|
||||
ParMesh& mesh_lor, Coefficient* alpha_coeff, Coefficient* beta_coeff,
|
||||
MatrixCoefficient* beta_mcoeff,
|
||||
Array<int>& ess_bdr, Operator& curlcurl_oper, Operator& pi,
|
||||
#ifdef MFEM_USE_AMGX
|
||||
bool useAmgX_,
|
||||
#endif
|
||||
int cg_iterations = 0);
|
||||
|
||||
// Complex Pi space constructor
|
||||
MatrixFreeAuxiliarySpace(
|
||||
ParMesh& mesh_lor, Coefficient* alpha_coeff, Coefficient* beta_coeff,
|
||||
Coefficient* beta_imag, Coefficient* abs_beta_imag,
|
||||
MatrixCoefficient* beta_mcoeff,
|
||||
Array<int>& ess_bdr, Operator& curlcurl_oper, Operator *oper_complex,
|
||||
Operator& pi,
|
||||
#ifdef MFEM_USE_AMGX
|
||||
bool useAmgX_,
|
||||
#endif
|
||||
int cg_iterations = 0);
|
||||
|
||||
/** @brief G space constructor
|
||||
|
||||
This has one coefficient in the AMS framework.
|
||||
|
||||
@param mesh_lor Low-order refined auxiliary mesh
|
||||
@param beta_coeff coefficient on mass term (1 if null)
|
||||
@param beta_mcoeff matrix coefficient on mass term
|
||||
@param ess_bdr attributes for essential boundaries
|
||||
@param curlcurl_oper High-order operator for the system
|
||||
@param g Gradient interpolation operator
|
||||
@param useAmgX_ Use AmgX instead of hypre for auxiliary solves
|
||||
@param cg_iterations number of CG iterations used to invert
|
||||
auxiliary system, choosing 0 means to
|
||||
use a single V-cycle
|
||||
*/
|
||||
MatrixFreeAuxiliarySpace(
|
||||
ParMesh& mesh_lor, Coefficient* beta_coeff,
|
||||
MatrixCoefficient* beta_mcoeff, Array<int>& ess_bdr,
|
||||
Operator& curlcurl_oper, Operator& g,
|
||||
#ifdef MFEM_USE_AMGX
|
||||
bool useAmgX_,
|
||||
#endif
|
||||
int cg_iterations = 1);
|
||||
|
||||
// Complex G space constructor
|
||||
MatrixFreeAuxiliarySpace(
|
||||
ParMesh& mesh_lor, Coefficient* beta_coeff, Coefficient* beta_imag,
|
||||
Coefficient* abs_beta_imag,
|
||||
MatrixCoefficient* beta_mcoeff, Array<int>& ess_bdr,
|
||||
Operator& curlcurl_oper, Operator *oper_complex, Operator& g,
|
||||
#ifdef MFEM_USE_AMGX
|
||||
bool useAmgX_,
|
||||
#endif
|
||||
int cg_iterations = 1);
|
||||
|
||||
~MatrixFreeAuxiliarySpace();
|
||||
|
||||
void Mult(const Vector& x, Vector& y) const;
|
||||
|
||||
void SetOperator(const Operator& op) {}
|
||||
|
||||
private:
|
||||
/** @brief Helper routine for constructors.
|
||||
|
||||
@param system_dimension is passed to HypreBoomerAMG::SetSystemsOptions
|
||||
*/
|
||||
void SetupAMG(int system_dimension);
|
||||
void SetupVCycle();
|
||||
|
||||
/// inner_cg_iterations > 99 applies an exact solve here
|
||||
void SetupCG(Operator& curlcurl_oper, Operator& conn,
|
||||
int inner_cg_iterations);
|
||||
|
||||
void SetupGMRES(Operator& curlcurl_oper, Operator& conn);
|
||||
|
||||
void SetupPMHSS();
|
||||
|
||||
MPI_Comm comm;
|
||||
Array<int> ess_tdof_list;
|
||||
HypreParMatrix * aspacematrix;
|
||||
HypreParMatrix * aspacematrix_complex;
|
||||
HypreParMatrix * aspacematrix_imag;
|
||||
Solver * aspacepc;
|
||||
Operator* matfree;
|
||||
CGSolver* cg;
|
||||
GMRESSolver* gmres;
|
||||
GMRESSolver* gmres_PMHSS;
|
||||
Operator* aspacewrapper;
|
||||
#ifdef MFEM_USE_AMGX
|
||||
const bool useAmgX;
|
||||
#endif
|
||||
mutable int inner_aux_iterations;
|
||||
|
||||
const bool imagBdry;
|
||||
|
||||
Complex_PMHSS *PMHSS = NULL;
|
||||
|
||||
Array<int> offsets;
|
||||
Array<int> offsets_nd;
|
||||
BlockDiagonalPreconditioner *BlockDP;
|
||||
|
||||
BlockOperator *conn_block;
|
||||
};
|
||||
|
||||
|
||||
/** @brief Perform AMS cycle with generic Operator objects.
|
||||
|
||||
Most users should use MatrixFreeAMS, which wraps this. */
|
||||
class GeneralAMS : public Solver
|
||||
{
|
||||
public:
|
||||
/** @brief Constructor.
|
||||
|
||||
Most of these arguments just need a Mult() operation,
|
||||
but pi and g also require MultTranspose() */
|
||||
GeneralAMS(const Operator& curlcurl_op_,
|
||||
Operator *oper_complex,
|
||||
const Operator& pi_,
|
||||
const Operator& gradient_,
|
||||
const Operator& pispacesolver_,
|
||||
const Operator& gspacesolver_,
|
||||
const Operator& smoother_,
|
||||
const Array<int>& ess_tdof_list_);
|
||||
virtual ~GeneralAMS();
|
||||
|
||||
/// in principle this should set A_ = op;
|
||||
void SetOperator(const Operator &op) {}
|
||||
|
||||
virtual void Mult(const Vector& x, Vector& y) const;
|
||||
|
||||
private:
|
||||
const Operator& curlcurl_op;
|
||||
Operator *oper_complex;
|
||||
const Operator& pi;
|
||||
const Operator& gradient;
|
||||
const Operator& pispacesolver;
|
||||
const Operator& gspacesolver;
|
||||
const Operator& smoother;
|
||||
const Array<int> ess_tdof_list;
|
||||
|
||||
void FormResidual(const Vector& rhs, const Vector& x,
|
||||
Vector& residual) const;
|
||||
};
|
||||
|
||||
|
||||
/** @brief An auxiliary Maxwell solver for a high-order curl-curl
|
||||
system without high-order assembly.
|
||||
|
||||
The auxiliary space solves are done using a low-order refined approach,
|
||||
but all the interpolation operators, residuals, etc. are done in a
|
||||
matrix-free manner.
|
||||
|
||||
See Barker and Kolev, Matrix-free preconditioning for high-order H(curl)
|
||||
discretizations (https://doi.org/10.1002/nla.2348) */
|
||||
class MatrixFreeAMS : public Solver
|
||||
{
|
||||
public:
|
||||
/** @brief Construct matrix-free AMS preconditioner
|
||||
|
||||
@param aform BilinearForm for curl-curl problem, generally will
|
||||
have a CurlCurlIntegrator and possibly a
|
||||
VectorFEMassIntegrator.
|
||||
@param oper Operator to precondition.
|
||||
@param nd_fespace Underlying Nedelec finite element space.
|
||||
@param alpha_coeff coefficient on curl-curl term in Maxwell problem
|
||||
(can be null, in which case constant 1 is assumed)
|
||||
@param beta_coeff (scalar) coefficient on mass term in Maxwell problem
|
||||
@param beta_mcoeff (matrix) coefficient on mass term
|
||||
@param ess_bdr boundary *attributes* that are marked essential. In
|
||||
contrast to other MFEM cases, these are *attributes*
|
||||
not dofs, because we need to apply these boundary
|
||||
conditions to different bilinear forms.
|
||||
@param useAmgX use AmgX (instead of hypre) for LOR problems
|
||||
@param inner_pi_its number of CG iterations on auxiliary pi space,
|
||||
may need more for difficult coefficients
|
||||
@param inner_g_its number of CG iterations on auxiliary g space,
|
||||
may need more for difficult coefficients
|
||||
@param nd_smoother optional user-provided smoother for Nedelec space,
|
||||
this object takes ownership and will delete.
|
||||
*/
|
||||
MatrixFreeAMS(ParBilinearForm& aform, Operator& oper, Operator *oper_complex,
|
||||
ParFiniteElementSpace& nd_fespace, Coefficient* alpha_coeff,
|
||||
Coefficient* beta_coeff, Coefficient* beta_imag,
|
||||
Coefficient* abs_beta_imag, MatrixCoefficient* beta_mcoeff,
|
||||
Array<int>& ess_bdr,
|
||||
#ifdef MFEM_USE_AMGX
|
||||
bool useAmgX = false,
|
||||
#endif
|
||||
int inner_pi_its = 0, int inner_g_its = 1,
|
||||
Solver* nd_smoother = NULL);
|
||||
|
||||
~MatrixFreeAMS();
|
||||
|
||||
void SetOperator(const Operator &op) {}
|
||||
|
||||
void Mult(const Vector& x, Vector& y) const { general_ams->Mult(x, y); }
|
||||
|
||||
private:
|
||||
GeneralAMS * general_ams;
|
||||
|
||||
Solver * smoother;
|
||||
ParDiscreteLinearOperator * pa_grad;
|
||||
OperatorPtr Gradient;
|
||||
ParDiscreteLinearOperator * pa_interp;
|
||||
OperatorPtr Pi;
|
||||
|
||||
Solver * Gspacesolver;
|
||||
Solver * Pispacesolver;
|
||||
|
||||
ParFiniteElementSpace * h1_fespace;
|
||||
ParFiniteElementSpace * h1_fespace_d;
|
||||
|
||||
Array<int> offsets_nd;
|
||||
Array<int> offsets_vector;
|
||||
Array<int> offsets_scalar;
|
||||
|
||||
BlockOperator *Pi_block;
|
||||
BlockOperator *Gradient_block;
|
||||
BlockOperator *smoother_block;
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
#endif
|
||||
@@ -29,6 +29,7 @@
|
||||
#include "solvers.hpp"
|
||||
#include "handle.hpp"
|
||||
#include "invariants.hpp"
|
||||
#include "auxiliary.hpp"
|
||||
|
||||
#ifdef MFEM_USE_AMGX
|
||||
#include "amgxsolver.hpp"
|
||||
|
||||
@@ -696,6 +696,42 @@ public:
|
||||
{ A_.Mult(x, y); y *= a_; }
|
||||
};
|
||||
|
||||
/// General sum operator: x -> A(x)+B(x)
|
||||
class SumOperator : public Operator
|
||||
{
|
||||
const Operator *A, *B;
|
||||
bool ownA, ownB;
|
||||
mutable Vector z, w;
|
||||
double cA, cB;
|
||||
|
||||
public:
|
||||
SumOperator(const Operator *A_, const Operator *B_,
|
||||
bool ownA_, bool ownB_, double cA_, double cB_)
|
||||
: Operator(A_->Height(), B_->Width()),
|
||||
A(A_), B(B_), ownA(ownA_), ownB(ownB_), z(A_->Height()), w(A_->Width()),
|
||||
cA(cA_), cB(cB_)
|
||||
{
|
||||
MFEM_VERIFY(A->Width() == B->Width() && A->Height() == B->Height(),
|
||||
"incompatible Operators: A->Width() = " << A->Width()
|
||||
<< ", B->Height() = " << B->Height());
|
||||
|
||||
z.UseDevice(true);
|
||||
w.UseDevice(true);
|
||||
}
|
||||
|
||||
~SumOperator()
|
||||
{
|
||||
if (ownA) { delete A; }
|
||||
if (ownB) { delete B; }
|
||||
}
|
||||
|
||||
virtual void Mult(const Vector &x, Vector &y) const
|
||||
{ B->Mult(x, z); A->Mult(x, y); y *= cA; z *= cB; y += z;}
|
||||
|
||||
virtual void MultTranspose(const Vector &x, Vector &y) const
|
||||
{ B->MultTranspose(x, w); A->MultTranspose(x, y); y *= cA; w *= cB; y += w;}
|
||||
|
||||
};
|
||||
|
||||
/** @brief The transpose of a given operator. Switches the roles of the methods
|
||||
Mult() and MultTranspose(). */
|
||||
|
||||
@@ -852,6 +852,169 @@ public:
|
||||
|
||||
#endif // MFEM_USE_SUITESPARSE
|
||||
|
||||
class Complex_PMHSS : public Solver
|
||||
{
|
||||
public:
|
||||
Complex_PMHSS(Operator *Re, Operator *Im, Solver *prec_Re, Solver *prec_Im,
|
||||
double a_)
|
||||
: Solver(2*Re->Height()), a(a_), A(Re, Im, false, false),
|
||||
A_Re(Re, NULL, false, false),
|
||||
A_Im(Im, NULL, false, false), u(2*Re->Height()), rhs(2*Re->Height()),
|
||||
n(Re->Height())
|
||||
{
|
||||
MFEM_VERIFY(Re->Height() == Im->Height() && Re->Height() == Re->Width() &&
|
||||
Im->Height() == Im->Width(), "");
|
||||
MFEM_VERIFY(this->Height() == A.Height(), "");
|
||||
|
||||
// Create CG solver for real operator aV + A_Re in complex space.
|
||||
|
||||
V = useIdentityV ? (Operator*) new IdentityOperator(this->Height()) :
|
||||
(Operator*) &A_Re;
|
||||
|
||||
// In the case V = A_Re, it is faster to use a scaled operator than a SumOperator
|
||||
Operator *sumOpRe = useIdentityV ? (Operator*) new SumOperator(V, &A_Re, false,
|
||||
false, a, 1.0)
|
||||
: (Operator*) new ScaledOperator(&A_Re, a + 1.0);
|
||||
|
||||
SumOperator *sumOpIm = new SumOperator(V, &A_Im, false, false, a, 1.0);
|
||||
|
||||
CGSolver *cg = new CGSolver(MPI_COMM_WORLD);
|
||||
cg->SetRelTol(1e-6);
|
||||
cg->SetMaxIter(1000);
|
||||
cg->SetPrintLevel(0);
|
||||
cg->SetOperator(*sumOpRe);
|
||||
cg->SetPreconditioner(*prec_Re);
|
||||
cg->iterative_mode = false;
|
||||
|
||||
SRe = cg;
|
||||
|
||||
CGSolver *cgi = new CGSolver(MPI_COMM_WORLD);
|
||||
cgi->SetRelTol(1e-6);
|
||||
cgi->SetMaxIter(1000);
|
||||
cgi->SetPrintLevel(0);
|
||||
cgi->SetOperator(*sumOpIm);
|
||||
if (prec_Im && useIdentityV) { cgi->SetPreconditioner(*prec_Im); }
|
||||
if (!useIdentityV) { cgi->SetPreconditioner(*prec_Re); }
|
||||
cgi->iterative_mode = false;
|
||||
|
||||
/*
|
||||
// For negative definite imaginary part, but then PMHSS does not work?
|
||||
MINRESSolver *cgi = new MINRESSolver(MPI_COMM_WORLD);
|
||||
cgi->SetRelTol(1e-12);
|
||||
cgi->SetMaxIter(1000);
|
||||
cgi->SetPrintLevel(0);
|
||||
cgi->SetOperator(*sumOpIm);
|
||||
if (prec_Im) cgi->SetPreconditioner(*prec_Im);
|
||||
*/
|
||||
|
||||
SIm = cgi;
|
||||
}
|
||||
|
||||
void SetOperator(const Operator &op)
|
||||
{
|
||||
MFEM_VERIFY(false, "Don't call SetOperator");
|
||||
}
|
||||
|
||||
void ComputeResidual(const Vector &b, const Vector &sol, Vector &res) const
|
||||
{
|
||||
A.Mult(sol, res);
|
||||
res -= b;
|
||||
}
|
||||
|
||||
void Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (!(x.Size() == Height() && y.Size() == Height()))
|
||||
{
|
||||
std::cout << "bug";
|
||||
}
|
||||
|
||||
MFEM_VERIFY(x.Size() == Height() && y.Size() == Height(), "");
|
||||
|
||||
const double initNorm = x.Norml2();
|
||||
mfem::out << "MHSS RHS norm " << initNorm << '\n';
|
||||
|
||||
// With V = I, use modified HSS (MHSS) from Bai, Benzi, Chen 2010.
|
||||
y = 0.0;
|
||||
|
||||
for (int it=0; it<maxiter; ++it)
|
||||
{
|
||||
// Solve (aI + Re) u = (aI - i Im) y + x
|
||||
|
||||
if (it == 0)
|
||||
{
|
||||
// Optimize the first iteration, when the initial guess is y=0.
|
||||
SRe->Mult(x, u);
|
||||
}
|
||||
else
|
||||
{
|
||||
A_Im.Mult(y, u); // u = Im y
|
||||
// Set rhs = -i Im y = -i u
|
||||
for (int j=0; j<n; ++j)
|
||||
{
|
||||
rhs[j] = u[n+j];
|
||||
rhs[n+j] = -u[j];
|
||||
}
|
||||
|
||||
rhs += x;
|
||||
|
||||
V->Mult(y, u);
|
||||
rhs.Add(a, u);
|
||||
|
||||
SRe->Mult(rhs, u);
|
||||
}
|
||||
|
||||
// Solve (aI + Im) y = (aI + i Re) u - i x
|
||||
|
||||
A_Re.Mult(u, y); // y = Re u
|
||||
// Set rhs = i (Re u - x) = i (y - x)
|
||||
for (int j=0; j<n; ++j)
|
||||
{
|
||||
rhs[j] = -(y[n+j] - x[n+j]);
|
||||
rhs[n+j] = y[j] - x[j];
|
||||
}
|
||||
|
||||
if (useIdentityV)
|
||||
{
|
||||
//V->Mult(u, y);
|
||||
//rhs.Add(a, y);
|
||||
rhs.Add(a, u);
|
||||
}
|
||||
else
|
||||
{
|
||||
// Using V = A_Re
|
||||
rhs.Add(a, y);
|
||||
}
|
||||
|
||||
SIm->Mult(rhs, y);
|
||||
|
||||
ComputeResidual(x, y, rhs);
|
||||
const double resNorm = rhs.Norml2();
|
||||
mfem::out << "MHSS iter " << it << " residual norm " << resNorm << '\n';
|
||||
|
||||
if (resNorm / initNorm < tol)
|
||||
{
|
||||
mfem::out << "MHSS converged\n";
|
||||
break;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
private:
|
||||
const double a;
|
||||
const int maxiter = 1;
|
||||
ComplexOperator A, A_Re, A_Im;
|
||||
mutable Vector u, rhs;
|
||||
const int n;
|
||||
|
||||
const double tol = 1.0e-8;
|
||||
|
||||
const bool useIdentityV = false;
|
||||
Operator *V = NULL;
|
||||
|
||||
Solver *SRe = NULL;
|
||||
Solver *SIm = NULL;
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
#endif // MFEM_SOLVERS
|
||||
|
||||
Reference in New Issue
Block a user