Extended PA for some vector mass and curl integrators to handle diagonal matrix coefficients. Added unit tests.

Implemented PA for MixedVectorCurlIntegrator and MixedVectorWeakCurlIntegrator. Added unit tests for these integrators.
2020-03-31 11:56:02 -07:00 · 2020-03-30 18:02:46 -07:00
546 changed files with 24007 additions and 104933 deletions
@@ -15,10 +15,8 @@ install:
 - msmpisdk.msi /passive
 - set PATH=C:\Program Files\Microsoft MPI\Bin;%PATH%

-# Install METIS, use a mirror because the original source server is not always
-# up. Original url:
-#    http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz
- ps: Start-FileDownload 'https://mfem.github.io/tpls/metis-5.1.0.tar.gz'
+# Install METIS
+- ps: Start-FileDownload 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz'
 - 7z x metis-5.1.0.tar.gz -so | 7z x -si -ttar > nul
 - cd metis-5.1.0
 - ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
@@ -28,17 +26,17 @@ install:
 - cd ..

 # Install hypre
- ps: Start-FileDownload 'https://github.com/hypre-space/hypre/archive/v2.19.0.tar.gz'
- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
- cd hypre-2.19.0/src
- cmake -H. -Bbuild -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
+- ps: Start-FileDownload 'https://github.com/hypre-space/hypre/archive/V2-10-0b.tar.gz'
+- 7z x V2-10-0b.tar.gz -so | 7z x -si -ttar > nul
+- cd hypre-2-10-0b
+- cmake -H. -Bbuild -DHYPRE_USING_FEI=OFF -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
 - cmake --build build
 - cmake --build build --target install
- cd ../..
+- cd ..

 # MFEM
 before_build:
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_DIR=%cd%\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
+- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_LIBRARIES=%cd%\hypre-2-10-0b\hypre\lib\HYPRE.lib -DHYPRE_INCLUDE_DIRS=%cd%\hypre-2-10-0b\hypre\include -DHYPRE_VERSION=21000 -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
 - cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE

 build_script:
@@ -1,61 +0,0 @@
-# Configuration for probot-stale - https://github.com/probot/stale
-
-# Number of days of inactivity before an Issue or Pull Request becomes stale
-daysUntilStale: 30
-
-# Number of days of inactivity before an Issue or Pull Request with the stale
-# label is closed.  Set to false to disable. If disabled, issues still need to
-# be closed manually, but will remain marked as stale.
-daysUntilClose: 7
-
-# Only issues or pull requests with all of these labels are check if stale.
-# Defaults to `[]` (disabled)
-onlyLabels: []
-
-# Issues or Pull Requests with these labels will never be considered stale. Set
-# to `[]` to disable
-exemptLabels:
-  - bug
-  - WIP
-  - ready-for-review
-  - in-review
-  - in-next
-
-# Set to true to ignore issues in a project (defaults to false)
-exemptProjects: false
-
-# Set to true to ignore issues in a milestone (defaults to false)
-exemptMilestones: false
-
-# Set to true to ignore issues with an assignee (defaults to false)
-exemptAssignees: false
-
-# Label to use when marking an issue as stale
-staleLabel: stale
-
-# Comment to post when marking an issue as stale. Set to `false` to disable
-markComment: >
-  :warning: This issue or PR has been automatically marked as stale because it has not
-  had any activity in the last month. *If no activity occurs in the next week, it will
-  be automatically closed.* Thank you for your contributions.
-
-# Comment to post when closing a stale issue. Set to `false` to disable
-closeComment: false
-
-# Limit the number of actions per hour, from 1-30. Default is 30
-limitPerRun: 30
-
-# Limit to only `issues` or `pulls`
-# only: issues
-
-# Optionally, specify configuration settings that are specific to just 'issues' or 'pulls':
-# pulls:
-#   daysUntilStale: 30
-#   markComment: >
-#     This pull request has been automatically marked as stale because it has not had
-#     recent activity. It will be closed if no further activity occurs. Thank you
-#     for your contributions.
-
-# issues:
-#   exemptLabels:
-#     - confirmed
@@ -29,8 +29,6 @@ config/sample-runs-build.log
 doc/CodeDocumentation.conf
 doc/CodeDocumentation.html
 doc/CodeDocumentation
-doc/undoc.log
-doc/warnings.log

 # Temporary files created by the tests.
 *.stderr
@@ -74,10 +72,6 @@ examples/deformed.*
 examples/velocity.*
 examples/elastic_energy.*
 examples/mode_*
-examples/ex5-p-*.bp
-examples/ex9-p-*.bp
-examples/ex12-p-*.bp
-examples/ex16-p-*.bp
 examples/ex16.mesh
 examples/ex16-mesh.*
 examples/ex16-init.*
@@ -102,56 +96,11 @@ examples/ex25.mesh
 examples/ex25-*.gf
 examples/ex25p-*.*

-examples/amgx/ex1
-examples/amgx/ex1p
-examples/amgx/.logamgx
-examples/amgx/refined.mesh
-examples/amgx/sol.gf
-examples/amgx/mesh.*
-examples/amgx/sol.*
-
-examples/gingko/ex1
-examples/gingko/refined.mesh
-examples/gingko/sol.gf
-examples/gingko/mesh.*
-examples/gingko/sol.*
-
-examples/hiop/ex9
-examples/hiop/ex9p
-examples/hiop/ex9.mesh
-examples/hiop/ex9-mesh.*
-examples/hiop/ex9-init.*
-examples/hiop/ex9-final.*
-
-examples/petsc/ex[1-69]p
-examples/petsc/ex1[0-1]p
-examples/petsc/mesh.*
-examples/petsc/sol.*
-examples/petsc/sol_p.*
-examples/petsc/sol_u.*
-examples/petsc/Example5*
-examples/petsc/ex9.mesh
-examples/petsc/ex9-mesh.*
-examples/petsc/ex9-init.*
-examples/petsc/ex9-final.*
-examples/petsc/Example9*
-examples/petsc/deformed.*
-examples/petsc/velocity.*
-examples/petsc/elastic_energy.*
-examples/petsc/mode_*
-
-examples/pumi/ex1
-examples/pumi/ex[126]p
-examples/pumi/refined.mesh
-examples/pumi/sol.gf
-examples/pumi/mesh.*
-examples/pumi/sol.*
-examples/pumi/displaced.mesh
-
 examples/sundials/ex9
 examples/sundials/ex1[06]
 examples/sundials/ex9p
 examples/sundials/ex1[06]p
+
 examples/sundials/ex9.mesh
 examples/sundials/ex9-mesh.*
 examples/sundials/ex9-init.*
@@ -166,27 +115,47 @@ examples/sundials/ex16-init.*
 examples/sundials/ex16-final.*
 examples/sundials/Example16*

-examples/superlu/ex1p
-examples/superlu/mesh.*
-examples/superlu/sol.*
+examples/petsc/ex[1-69]p
+examples/petsc/ex10p

-miniapps/adjoint/cvsRoberts_ASAi_dns
-miniapps/adjoint/adjoint_advection_diffusion
+examples/petsc/mesh.*
+examples/petsc/sol.*
+examples/petsc/sol_p.*
+examples/petsc/sol_u.*
+examples/petsc/Example5*
+examples/petsc/ex9.mesh
+examples/petsc/ex9-mesh.*
+examples/petsc/ex9-init.*
+examples/petsc/ex9-final.*
+examples/petsc/Example9*
+examples/petsc/deformed.*
+examples/petsc/velocity.*
+examples/petsc/elastic_energy.*
+
+examples/pumi/ex1
+examples/pumi/ex[126]p
+
+examples/hiop/ex9.mesh
+examples/hiop/ex9-mesh.*
+examples/hiop/ex9-init.*
+examples/hiop/ex9-final.*
+
+examples/pumi/refined.mesh
+examples/pumi/sol.gf
+examples/pumi/mesh.*
+examples/pumi/sol.*
+examples/pumi/displaced.mesh

 miniapps/electromagnetics/volta
 miniapps/electromagnetics/tesla
 miniapps/electromagnetics/maxwell
 miniapps/electromagnetics/joule
+
 miniapps/electromagnetics/Volta-AMR*
 miniapps/electromagnetics/Tesla-AMR*
 miniapps/electromagnetics/Maxwell-Parallel*
 miniapps/electromagnetics/Joule_*

-miniapps/gslib/field-diff
-miniapps/gslib/field-interp
-miniapps/gslib/findpts
-miniapps/gslib/pfindpts
-
 miniapps/meshing/mobius-strip
 miniapps/meshing/klein-bottle
 miniapps/meshing/toroid
@@ -194,12 +163,9 @@ miniapps/meshing/twist
 miniapps/meshing/mesh-explorer
 miniapps/meshing/shaper
 miniapps/meshing/extruder
-miniapps/meshing/trimmer
 miniapps/meshing/mesh-optimizer
 miniapps/meshing/pmesh-optimizer
-miniapps/meshing/minimal-surface
-miniapps/meshing/pminimal-surface
-miniapps/meshing/polar-nc
+
 miniapps/meshing/mobius-strip.mesh
 miniapps/meshing/klein-bottle.mesh
 miniapps/meshing/toroid-*.mesh
@@ -208,31 +174,12 @@ miniapps/meshing/mesh-explorer.mesh
 miniapps/meshing/partitioning.txt
 miniapps/meshing/shaper.mesh
 miniapps/meshing/extruder.mesh
-miniapps/meshing/trimmer.mesh
 miniapps/meshing/optimized*
 miniapps/meshing/perturbed*
-miniapps/meshing/polar-nc.mesh
-
-miniapps/navier/navier_mms
-miniapps/navier/navier_kovasznay
-miniapps/navier/navier_kovasznay_vs
-miniapps/navier/navier_tgv
-miniapps/navier/navier_shear
-miniapps/navier/navier_3dfoc
-miniapps/navier/tgv_out*.txt
-miniapps/navier/*_output
-
-miniapps/nurbs/nurbs_ex1
-miniapps/nurbs/nurbs_ex1p
-miniapps/nurbs/nurbs_ex11p
-miniapps/nurbs/refined.mesh
-miniapps/nurbs/mesh.*
-miniapps/nurbs/sol.*
-miniapps/nurbs/mode_*
-miniapps/nurbs/Example1*

 miniapps/performance/ex1
 miniapps/performance/ex1p
+
 miniapps/performance/refined.mesh
 miniapps/performance/mesh.*
 miniapps/performance/sol.*
@@ -250,6 +197,7 @@ miniapps/toys/rubik
 miniapps/toys/snake
 miniapps/toys/lissajous
 miniapps/toys/mondrian
+
 miniapps/toys/snake-init.mesh
 miniapps/toys/snake-user.mesh
 miniapps/toys/snake-joined.mesh
@@ -264,23 +212,30 @@ miniapps/toys/lissajous.mesh
 miniapps/toys/lissajous.gf
 miniapps/toys/mondrian.mesh

+miniapps/nurbs/nurbs_ex1
+miniapps/nurbs/nurbs_ex1p
+miniapps/nurbs/nurbs_ex11p
+miniapps/nurbs/refined.mesh
+miniapps/nurbs/mesh.*
+miniapps/nurbs/sol.*
+miniapps/nurbs/mode_*
+miniapps/nurbs/Example1*
+
+miniapps/gslib/field-diff
+miniapps/gslib/findpts
+miniapps/gslib/pfindpts
+
 # Unit test binary and outputs
 tests/unit/output_meshes
 tests/unit/unit_tests
 tests/unit/punit_tests
 tests/unit/sedov_tests_*
 tests/unit/psedov_tests_*
-tests/unit/ceed_tests

 # Test script output
 tests/scripts/*.err
 tests/scripts/*.out
 tests/scripts/*.msg

-# Other tests
-tests/convergence/rates
-tests/convergence/prates
-tests/par-mesh-format/ex1p
-
 # VPATH builds
 build-*/*
@@ -71,21 +71,15 @@ stages:
  - build
  - test
  - deallocate
-  - lassen_build
-  - lassen_test
  - baseline_check
  - baseline_publish

-# The setup job in setup stage don't rely on MFEM git repo. It prepares a
+# The setup job in setup stage don’t rely on MFEM git repo. It prepares a
 # pipeline-wide working directory downloading/updating external repos.
 # TODO: updating tests and tpls is not necessary anymore since pipelines are
 # now using unique directories so repo are never shared with another pipeline.
 # This is not memory efficient (we keep a lot of data), hence this reminder.
-# Setup
-setup:
-  tags:
-    - shell
-    - quartz
+.setup:
  stage: setup
  variables:
    GIT_STRATEGY: none
@@ -106,15 +100,6 @@ setup:
  before_script:
    - module load gcc/6.1.0

-# On lassen
-.with_gcc_8_3_1:
-  variables:
-    TOOLCHAIN: gcc_8_3_1
-    CXX: g++
-    CC: gcc
-  before_script:
-    - module load gcc/8.3.1
-
 .with_gcc_4_9_3:
  variables:
    TOOLCHAIN: gcc_4_9_3
@@ -226,7 +211,7 @@ setup:
    echo "${BASELINE_TEST}: Differences found, replacement file generated"
    cp ${_base_out} ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/${_base_out}.txt
  fi
-  # _base_diff won't even exist if there is no difference.
+  # _base_diff won’t even exist if there is no difference.
  if [[ -f ${_base_diff} ]]
  then
    echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
@@ -305,4 +290,3 @@ setup:
 # The list on jobs is defined in machine-specific files.
 include:
  - local: .gitlab/quartz.yml
-  - local: .gitlab/lassen.yml
@@ -1,57 +0,0 @@
-# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# GitLab pipelines configurations for the Lassen machine at LLNL
-
-.on_lassen:
-  tags:
-    - shell
-    - lassen
-  variables:
-    PLAT: lassen
-
-# Build MFEM
-build_mfem_ser_lassen:
-  extends: [.with_gcc_8_3_1, .on_lassen]
-  needs: [setup]
-  stage: lassen_build
-  script:
-    - mkdir -p ${BUILD_PATH}
-    - cp -r ${CI_PROJECT_DIR} ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser
-    - cd ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser
-    - lalloc 1 -W 5 -q pdebug make -j cuda CUDA_ARCH=sm_70
-
-build_mfem_debug_ser_lassen:
-  extends: [.with_gcc_8_3_1, .on_lassen]
-  needs: [setup]
-  stage: lassen_build
-  script:
-    - mkdir -p ${BUILD_PATH}
-    - cp -r ${CI_PROJECT_DIR} ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser_debug
-    - cd ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser_debug
-    - lalloc 1 -W 5 -q pdebug make -j cuda MFEM_DEBUG="YES" CPPFLAGS=-O2 CUDA_ARCH=sm_70
-
-# Sanity check
-sanitycheck_mfem_ser_lassen:
-  extends: [.with_gcc_8_3_1, .on_lassen]
-  stage: lassen_test
-  needs: [build_mfem_ser_lassen]
-  script:
-    - cd ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser
-    - lalloc 1 -W 15 -q pdebug make -j test
-
-sanitycheck_mfem_debug_ser_lassen:
-  extends: [.with_gcc_8_3_1, .on_lassen]
-  stage: lassen_test
-  needs: [build_mfem_debug_ser_lassen]
-  script:
-    - cd ${BUILD_PATH}/${CI_PROJECT_NAME}_lassen_ser_debug
-    - lalloc 1 -W 30 -q pdebug make -j test
@@ -22,6 +22,10 @@
    MAKE_PAR: 6
    BASELINE_PAR: 18

+# Setup
+setup_quartz:
+  extends: [.setup, .on_quartz]
+
 # Allocate
 allocate_quartz:
  variables:
@@ -11,20 +11,13 @@

 language: cpp

-os: linux
-dist: bionic
+sudo: false

 stages:
  - checks
  - tests
  - optional

-env:
-  global:
-    - HYPRE_ARCHIVE=v2.19.0.tar.gz
-      HYPRE_URL=https://github.com/hypre-space/hypre/archive/$HYPRE_ARCHIVE
-      HYPRE_TOP_DIR=hypre-2.19.0
-
 jobs:
  include:

@@ -37,7 +30,6 @@ jobs:

    - stage: checks
      os: linux
-      dist: xenial
      name: "code-style"
      addons:
        apt:
@@ -56,6 +48,9 @@ jobs:
          packages:
            - doxygen
            - graphviz
+            - mpich
+            - libmpich-dev
+      env: MPI=YES
      script:
        - cd ${TRAVIS_BUILD_DIR}
        - cd tests/scripts
@@ -70,24 +65,13 @@ jobs:
            - mpich
            - libmpich-dev
      env: MPI=YES
-      before_script:
+      script:
        - cd ${TRAVIS_BUILD_DIR}
-        - mpicxx -v
        - make config MFEM_USE_MPI=YES MFEM_MPI_NP=2
        - make all -j3
        - make test-noclean
-      script:
        - cd tests/scripts
        - ./runtest gitignore
-      cache:
-        ccache: true
-        directories:
-          - $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
-          - $TRAVIS_BUILD_DIR/../metis-4.0
-      before_cache:
-        - cd $TRAVIS_BUILD_DIR/../metis-4.0;
-          mv libmetis.a Lib ..; rm -rf * ; mv ../libmetis.a ../Lib .;
-          rm -f Lib/*.{c,o}

    # ========================
    #  Optional Checks/Tests
@@ -96,7 +80,6 @@ jobs:

    - stage: optional
      name: "branch-history"
-      if: branch != next
      # need full git history for the binary/big files check
      git:
        depth: false
@@ -125,8 +108,6 @@ jobs:
           MPI=NO
           CODECOV=NO
           MFEM_TEST_TARGET=check
-      cache:
-        ccache: true

    - os: linux
      compiler: gcc
@@ -135,8 +116,6 @@ jobs:
           MPI=NO
           CODECOV=NO
           MFEM_TEST_TARGET=test
-      cache:
-        ccache: true

    - os: linux
      compiler: gcc
@@ -160,9 +139,9 @@ jobs:
           MFEM_TEST_TARGET=check
           NPROCS=2
      cache:
-        ccache: true
        directories:
-          - $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
+          - $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
+          - $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
          - $TRAVIS_BUILD_DIR/../metis-4.0
      before_cache:
        - cd $TRAVIS_BUILD_DIR/../metis-4.0;
@@ -191,9 +170,9 @@ jobs:
           MFEM_TEST_TARGET=test
           NPROCS=2
      cache:
-        ccache: true
        directories:
-          - $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
+          - $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
+          - $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
          - $TRAVIS_BUILD_DIR/../metis-4.0
      before_cache:
        - cd $TRAVIS_BUILD_DIR/../metis-4.0;
@@ -216,16 +195,16 @@ jobs:
        - cd ${TRAVIS_BUILD_DIR}/build
        - cmake ..
             -DMFEM_USE_MPI=ON
-             -DHYPRE_DIR=${TRAVIS_BUILD_DIR}/../$HYPRE_TOP_DIR/src/hypre
+             -DHYPRE_DIR=${TRAVIS_BUILD_DIR}/../hypre-2.10.0b/src/hypre
             -DMFEM_MPI_NP=$NPROCS
        - make -j3 mfem examples
        - cd ${TRAVIS_BUILD_DIR}/build/tests/unit
        - make -j3
        - ctest --output-on-failure
      cache:
-        ccache: true
        directories:
-          - $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
+          - $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
+          - $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
          - $TRAVIS_BUILD_DIR/../metis-4.0
      before_cache:
        - cd $TRAVIS_BUILD_DIR/../metis-4.0;
@@ -241,43 +220,27 @@ jobs:
    # - parallel

    - os: osx
-      osx_image: xcode11.2
+      # osx_image: xcode7.3
      compiler: clang
      name: "Mac: Serial + Debug"
-      addons:
-        homebrew:
-          packages:
-            - ccache
      env: DEBUG=YES
           MPI=NO
           CODECOV=NO
           MFEM_TEST_TARGET=check
-      cache:
-        ccache: true

    - os: osx
-      osx_image: xcode11.2
+      # osx_image: xcode7.3
      compiler: clang
      name: "Mac: Serial"
-      addons:
-        homebrew:
-          packages:
-            - ccache
      env: DEBUG=NO
           MPI=NO
           CODECOV=NO
           MFEM_TEST_TARGET=test
-      cache:
-        ccache: true

    - os: osx
-      osx_image: xcode11.2
+      # osx_image: xcode7.3
      compiler: clang
      name: "Mac: Parallel + Debug"
-      addons:
-        homebrew:
-          packages:
-            - ccache
      env: DEBUG=YES
           MPI=YES
           CODECOV=NO
@@ -285,9 +248,9 @@ jobs:
           NPROCS=4
           TMPDIR=/tmp
      cache:
-        ccache: true
        directories:
-          - $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
+          - $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
+          - $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
          - $TRAVIS_BUILD_DIR/../metis-4.0
          - $HOME/local-cached
      before_cache:
@@ -296,13 +259,9 @@ jobs:
          rm -f Lib/*.{c,o}

    - os: osx
-      osx_image: xcode11.2
+      # osx_image: xcode7.3
      compiler: clang
      name: "Mac: Parallel"
-      addons:
-        homebrew:
-          packages:
-            - ccache
      env: DEBUG=NO
           MPI=YES
           CODECOV=YES
@@ -310,9 +269,9 @@ jobs:
           NPROCS=4
           TMPDIR=/tmp
      cache:
-        ccache: true
        directories:
-          - $TRAVIS_BUILD_DIR/../$HYPRE_TOP_DIR/src/hypre
+          - $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/lib
+          - $TRAVIS_BUILD_DIR/../hypre-2.10.0b/src/hypre/include
          - $TRAVIS_BUILD_DIR/../metis-4.0
          - $HOME/local-cached
      before_cache:
@@ -326,19 +285,14 @@ before_install:
   #      brew install open-mpi;
   #   fi

-   # Disable ccache while building dependencies that are cached:
-   - echo "before \$PATH = $PATH";
-     export PATH=${PATH//\/usr\/lib\/ccache:/};
-     echo "after  \$PATH = $PATH"
-
-   # On Mac OS X, build and cache OpenMPI 2.1.6:
+   # On Mac OS X, build and cache OpenMPI 2.1.1:
   - if [ $TRAVIS_OS_NAME == "osx" ] && [ $MPI == "YES" ]; then
        if [ ! -e $HOME/local-cached/bin/mpicc ]; then
           mkdir -p $HOME/builds && cd $HOME/builds &&
-           wget https://download.open-mpi.org/release/open-mpi/v2.1/openmpi-2.1.6.tar.bz2 &&
-           tar jxf openmpi-2.1.6.tar.bz2 &&
+           wget https://www.open-mpi.org/software/ompi/v2.1/downloads/openmpi-2.1.1.tar.bz2 &&
+           tar jxf openmpi-2.1.1.tar.bz2 &&
           mkdir openmpi-build && cd openmpi-build &&
-           ../openmpi-2.1.6/configure --prefix=$HOME/local-cached &&
+           ../openmpi-2.1.1/configure --prefix=$HOME/local-cached &&
           make -j3 all && make install;
        fi;
        PATH=$HOME/local-cached/bin:$PATH;
@@ -383,28 +337,26 @@ install:

   # hypre
   - if [ $MPI == "YES" ]; then
-        if [ ! -e $HYPRE_TOP_DIR/src/hypre/lib/libHYPRE.a ]; then
-           wget $HYPRE_URL;
-           rm -rf $HYPRE_TOP_DIR;
-           tar xvzf $HYPRE_ARCHIVE;
-           cd $HYPRE_TOP_DIR/src;
-           ./configure --disable-fortran CC=mpicc CXX=mpic++;
+        if [ ! -e hypre-2.10.0b/src/hypre/lib/libHYPRE.a ]; then
+           wget https://computation.llnl.gov/project/linear_solvers/download/hypre-2.10.0b.tar.gz --no-check-certificate;
+           rm -rf hypre-2.10.0b;
+           tar xvzf hypre-2.10.0b.tar.gz;
+           cd hypre-2.10.0b/src;
+           ./configure --disable-fortran --without-fei CC=mpicc CXX=mpic++;
           make -j3;
           cd ../..;
        else
-            echo "Reusing cached $HYPRE_TOP_DIR/";
+            echo "Reusing cached hypre-2.10.0b/";
        fi;
-        ln -s $HYPRE_TOP_DIR hypre;
+        ln -s hypre-2.10.0b hypre;
     else
        echo "Serial build, not using hypre";
     fi

-   # METIS, use a mirror because the original source server is not always up.
-   # Original url:
-   #    http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/metis-4.0.3.tar.gz
+   # METIS
   - if [ $MPI == "YES" ]; then
        if [ ! -e metis-4.0/libmetis.a ]; then
-           wget https://mfem.github.io/tpls/metis-4.0.3.tar.gz;
+           wget http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD/metis-4.0.3.tar.gz;
           tar xvzf metis-4.0.3.tar.gz;
           make -j3 -C metis-4.0.3/Lib CC="$CC" OPTFLAGS="-O2";
           rm -rf metis-4.0;
@@ -414,26 +366,12 @@ install:
        fi;
     fi

-   # Re-enable ccache on linux; enable ccache on mac os:
-   - if [ $TRAVIS_OS_NAME == "linux" ]; then
-        export PATH="/usr/lib/ccache:$PATH";
-     else
-        if [ $TRAVIS_OS_NAME == "osx" ]; then
-           export PATH="/usr/local/opt/ccache/libexec:$PATH";
-        fi;
-     fi
-
-   - printf "which \$CC  = "; which $CC;
-     printf "which \$CXX = "; which $CXX
-
 script:
   # Compiler
   - if [ $MPI == "YES" ]; then
        export MYCXX=mpic++;
-        export MAKE_CXX_FLAG=MPICXX=$MYCXX;
     else
        export MYCXX="$CXX";
-        export MAKE_CXX_FLAG=CXX=$MYCXX;
     fi

   # Print the compiler version
@@ -446,12 +384,12 @@ script:
     if [ "$CODECOV" == "YES" ]; then
        CPPFLAGS="--coverage -g";
     fi;
-     if [ "$TRAVIS_OS_NAME" != "linux" ] || [ "$DEBUG" == "YES" ]; then
-        CPPFLAGS+=" -pedantic -Wall -Werror";
+     if [ "$CXX" == "clang++" ]; then
+        export MFEM_PERF_SW=clang;
     fi

   # Configure the library
-   - make config MFEM_USE_MPI=$MPI MFEM_DEBUG=$DEBUG $MAKE_CXX_FLAG
+   - make config MFEM_USE_MPI=$MPI MFEM_DEBUG=$DEBUG MFEM_CXX="$MYCXX"
        MFEM_MPI_NP=$NPROCS CPPFLAGS="$CPPFLAGS"
   # Show the configuration
   - make info
@@ -5,274 +5,37 @@
                      | | | | | ||  _||  __/| | | | | |
                      |_| |_| |_||_|   \___||_| |_| |_|

-                               https://mfem.org
+                               http://mfem.org


-Version 4.2.1 (development)
+Version 4.1.1 (development)
 ===========================

- Added matrix-free GPU-enabled implementations of GradientInterpolator and
-  IdentityInterpolator.
-
- Added interface to MUMPS direct solver. Its usage is demonstrated in ex25p.
-  See http://mumps.enseeiht.fr/ for more details. Supported versions >= 5.1.1.
-
- Added three ESDIRK time integrators: implicit trapezoid rule, L-stable
-  ESDIRK-32, and A-stable ESDIRK-33.
-
- Added a "scaled Jacobian" visualization option in the Mesh Explorer miniapp to
-  help identify elements with poor mesh quality.
-
- Added support for the "BR2" discontinuous Galerkin discretization for
-  diffusion via DGDiffusionBR2Integrator (see Example 14/14p).
-
- Generalized the Multigrid class to support non-geometric multigrid. The
-  previous functionality, based on FiniteElementSpaceHierarchy, is now available
-  in the derived class GeometricMultigrid.
-
- Upgraded the Catch unit test framework from version 2.13.0 to version 2.13.2.
-
- Implemented a filter method for the Navier miniapp to stabilize highly
-  turbulent flows in direct numerical simulation.
-
- Added support for reading high-order Lagrange meshes in VTK format. Arbitrary-
-  orders and all element types are supported. See the VTK blog for more info:
-  https://blog.kitware.com/wp-content/uploads/2018/09/Source_Issue_43.pdf
-
- Added support for reading VTK meshes in XML format.
-
- Added partial assembly and device support to Example 25/25p, with diagonal
-  preconditioning.
-
- Implemented a variable step-size IMEX (VSSIMEX) method for the Navier miniapp.
-
- Added new mesh quality metrics and improved the untangling capabilities of the
-  TMOP-based mesh optimization algorithms.
-
- Changed the interface for the error estimator.
-
- Implemented the parallel Kelly error indicator for scalar-valued problems.
-
- Added new classes DenseSymmetricMatrix and SymmetricMatrixCoefficient for
-  efficient evaluation of symmetric matrix coefficients. This replaces the now
-  deprecated EvalSymmetric in MatrixCoefficient. Added DiagonalMatrixCoefficient
-  for clarity, which is a typedef of VectorCoefficient.
-
- Added support for AMG preconditioners for non-symmetric systems (e.g.
-  advection-dominated problems) using hypre's approximate ideal restriction
-  (AIR) AMG. Requires hypre version 2.14.0 or newer. Usage is illustrated in
-  example 9/9p.
-
- Implemented an adaptive linear solver tolerance option for NewtonSolver based
-  on the algorithm of Eisenstat and Walker.
-
- Extending support for L2 basis functions using MapTypes VALUE and INTEGRAL in
-  linear interpolators and GridFunction "GetValue" methods.
-
-
-Version 4.2, released on October 30, 2020
-=========================================
-
-High-Performance Computing
--------------------------
- Added support for explicit vectorization in the high-performance templated
-  code, which can now take advantage of specific classes on the following
-  architectures:
-  * x86 (SSE/AVX/AVX2/AVX512),
-  * Power8 & Power9 (VSX),
-  * BG/Q (QPX).
-  These are disabled by default, but can be enabled with MFEM_USE_SIMD=YES.
-  See the new file linalg/simd.hpp and the new directory linalg/simd.
-
- Added an Element Assembly mode compatible with GPU device execution for H1 and
-  L2 spaces in the mass, convection, diffusion, transpose, and the face DG trace
-  integrators. See option '-ea' in Example 9. When enabled, this assembly level
-  stores independent dense matrices for the elements, and independent dense
-  matrices for the faces in the DG case.
-
- Added a Full Assembly mode compatible with GPU device execution. This assembly
-  level builds on top of the Element Assembly kernels to compute a global sparse
-  matrix. All integrators supported by element assembly are also supported by
-  full assembly. See the '-fa' option in Example 9.
-
- Optimized the AMD/HIP kernel support and enabled HIP support in the libCEED
-  integration. This is now available via the "ceed-hip" device backend.
-
- Improved the libCEED integration to support:
-  * AssemblyLevel::NONE for Mass, Diffusion, VectorMass, and VectorDiffusion
-    Integrators. This level computes the full operator evaluation "on the fly".
-  * VectorMassIntegrator and VectorDiffusionIntegrator.
-  * All types of (scalar) Coefficients.
-
- Added partial assembly / device support for:
-  * H(div) bilinear forms and VectorFEDivergenceIntegrator.
-  * BlockOperator, see the updated Example 5.
-  * Complex operators, see the updated Example 22.
-  * Chebyshev accelerated polynomial smoother.
-  * Convergent diagonal preconditioning on non-conforming adaptively refined
-    meshes, see Example 6/6p.
-
- Added CUDA support for:
-  * Sparse matrix-vector multiplication with cuSPARSE,
-  * SUNDIALS ODE integrators, see updated SUNDIALS modification of Example 9/9p.
-
-Linear and nonlinear solvers
----------------------------
- Added a new solver class for simple integration with NVIDIA's multigrid
-  library, AmgX. The AmgX class is designed to work as a standalone solver or
-  preconditioner for existing MFEM solvers. It uses MFEM's sparse matrix format
-  for serial runs and the HypreParMatrix format for parallel runs. The new
-  solver may be configured to run with one GPU per MPI rank or with more MPI
-  ranks than GPUs. In the latter case, matrices and vectors are consolidated to
-  ranks communicating with the GPUs and the solution is then broadcasted.
-
-  Although CUDA is required to build, the AmgX support is compatible with the
-  MFEM CPU device configuration. The examples/amgx folder illustrates how to
-  integrate AmgX in existing MFEM applications. The AmgX solver class is
-  partially based on: "AmgXWrapper: An interface between PETSc and the NVIDIA
-  AmgX library", by Pi-Yueh Chuang and Lorena A. Barba, doi:10.21105/joss.00280.
-
- Added initial support for geometric h- and p-multigrid preconditioners for
-  matrix-based and matrix-free discretizations with basic GPU capability, see
-  Example 26/26p.
-
- Added support for the CVODES package in SUNDIALS which provides ODE solvers
-  with sensitivity analysis capabilities. See the CVODESSolver class and the new
-  adjoint miniapps in the miniapps/adjoint directory.
-
- Added an interface to the MKL CPardiso solver, an MPI-parallel sparse direct
-  solver developed by Intel. See Example 11p for an illustration of its usage.
-
- Added support for the SLEPc eigensolver package, https://slepc.upv.es.
-
- Upgraded SuperLU interface to use SuperLU_DIST 6.3.1. Added a simple SuperLU
-  example in the new directory examples/superlu.
-
- Extended the KINSOL (SUNDIALS) nonlinear solver interface to support the
-  Jacobian-free Newton-Krylov method. A usage example is shown in Example 10p.
-
- Block arrays of parallel matrices can now be merged into a single parallel
-  matrix with the function HypreParMatrixFromBlocks. This could be useful for
-  solving block systems with parallel direct solvers such as STRUMPACK.
-
- Added wrappers for hypre's flexible GMRES solver and the new parallel ILU
-  preconditioner. The latter requires hypre version 2.19.0 or later.
-
-Discretization improvements
---------------------------
- Extended GSLIB-FindPoints integration to support simplices and interpolation
-  of functions from L2, H(div) and H(curl) spaces.
-
- Added support for computing asymptotic error estimates and convergence rates
-  for the whole de Rham sequence based on the new class ConvergenceStudy and new
-  member methods in GridFunction and ParGridFunction. See the rates.cpp file in
-  the tests/convergence directory for sample usage.
-
- Extended the GetValue and GetVectorValue methods of GridFunction to support
-  evaluation on boundary elements and, in the continuous field case, arbitrary
-  mesh edges and faces. This requires passing an ElementTransformation argument.
-
- Added support for matrix-free interpolation and restriction operators between
-  continuous H1 finite element spaces of different order on the same mesh or
-  with the same order on uniformly refined meshes.
-
- The Coefficient classes based on a C-function pointer (FunctionCoefficient,
-  VectorFunctionCoefficient and MatrixFunctionCoefficient) now use the more
-  general std::function class template. This allows the classes to be backward
-  compatible (i.e. they can still work with C-functions) and, in addition,
-  support any "callable", e.g. lambda functions.
-
- Non-conforming meshes are now supported with block nonlinear forms. See the
-  updated Example 19/19p.
-
 Meshing improvements
 --------------------
 - The graph linear ordering library Gecko, previously an external dependency, is
  now included directly in MFEM. As a result, Mesh::GetGeckoElementOrdering is
  always available. The interface has also been improved, see for example the
-  Mesh Explorer miniapp.
+  mesh-explorer miniapp.

 - Added support for finite difference-based gradient and Hessian approximation
  in the TMOP mesh optimization algorithms. This improves the accuracy of the
  Hessian for r-adaptivity using discrete fields, and allows use of skewness
  and orientation based metrics.

- Improved Gmsh reader (version 2.2), which now supports both high-order and
-  periodic meshes. Segments, triangles, quadrilaterals, and tetrahedra are
-  supported up to order 10. Wedges and hexahedra are supported up to order 9.
-  For sample periodic meshes, see the periodic*.msh files in the data directory.
-
- Added support for construction of (serial) non-conforming meshes. Hanging
-  nodes can be marked with Mesh::AddVertexParents when building the mesh with
-  the "init" constructor. The usage is demonstrated in a new meshing miniapp,
-  Polar NC, which generates meshes that are non-conforming from the start.
-
- Added support for r-adaptivity with more than one discrete field. This allows
-  the user to specify different discrete functions for controlling the size,
-  aspect-ratio, orientation, and skew of elements in the mesh.
-
- Additional TMOP improvements:
-  * Capability for approximate tangential mesh relaxation.
-  * Support and examples for using TMOP on mixed meshes.
-  * Complete integrator action accounting for spatial derivatives of discrete
-    and analytic targets.
-
 New and updated examples and miniapps
 -------------------------------------
- Added a new miniapp, Navier, that solves the time-dependent Navier-Stokes
-  equations of incompressible fluid dynamics. See the miniapps/navier directory
-  for more details.
+- Adding a simple meshing miniapp, Twist, which demonstrates MFEM's strategy of
+  stitching together opposite surfaces of a mesh to create a topologically
+  periodic mesh.

- Added 10 new example codes:
-  * Example 25/25p demonstrates the use of a Perfectly Matched Layer (PML) for
-    electromagnetic wave propagation (indefinite Maxwell).
-  * Example 26/26p shows how to construct matrix-free geometric and p-multigrid
-    preconditioner for the Laplace problem.
-  * Example 27/27p demonstrates the enforcement of Dirichlet, Neumann, Robin,
-    and periodic boundary conditions with either H1 or DG Laplace problems.
-  * Versions of Example 1/1p in examples/amgx demonstrating the use of AmgX,
-    to solve the Laplace problem with AMG preconditioning on GPUs.
-  * A version of Example 11p in examples/petsc demonstrating the use of SLEPc,
-    to solve the Laplace eigenproblem with shift-and-invert transformation.
-  * A version of Example 1 in examples/superlu demonstrating the use of SuperLU
-    to solve the Laplace problem.
+- Added a new example, Example 25/25p, to demonstrate the use of a Perfectly
+  Matched Layer (PML) for the simulation of electromagnetic wave propagation.
+  The example defines and solves several indefinite Maxwell problems.

- Added a new Field Interpolation miniapp in miniapps/gslib that demonstrates
-  transfer of grid functions between different meshes using GSLIB-FindPoints.
-
- Added 2 miniapps in the new miniapps/adjoint directory demonstrating how to
-  solve adjoint problems in MFEM using the CVODES package in SUNDIALS. Both of
-  these miniapps require the MFEM_USE_SUNDIALS configuration option.
-  * The cvsRoberts_ASAi_dns miniapp solves a backward adjoint problem for a
-    system of ODEs, evaluating both forward and adjoint quadratures in serial.
-  * The adjoint_advection_diffusion miniapp solves a backward adjoint problem
-    for an advection diffusion PDE, evaluating adjoint quadratures in parallel.
-
- Added 4 additional meshing miniapps:
-  * The Minimal Surface miniapp solves Plateau's problem: the Dirichlet problem
-    for the minimal surface equation.
-  * The Twist miniapp demonstrates how to stitch together opposite surfaces of a
-    mesh to create a topologically periodic mesh.
-  * The Trimmer miniapp trims away parts of a mesh based on element attributes.
-  * Polar NC shows the construction of polar non-conforming meshes.
-
- Several examples and miniapps were updated to include:
-  * Full and element assembly support in Example 9/9p.
-  * Partial assembly with diagonal preconditioning in Examples 4/4p/5/5p/22/22p.
-  * Diagonal preconditioner in Example 6/6p for partial assembly with AMR.
-  * The option to plot a function in Mesh Explorer.
-  * A new test problem showing a mixed bilinear form for H1, H(curl), H(div) and
-    L2, with partial assembly support in Example 24/24p.
-  * Weak Dirichlet boundary conditions (Nitsche) to the NURBS miniapp.
-
-Data management and Visualization
---------------------------------
- Added support for ADIOS2 for parallel I/O with ParaView visualization. See
-  Examples 5, 9, 12, 16. The classes adios2stream and ADIOS2DataCollection
-  provide the interface to generate ADIOS2 Binary Pack (BP4) directory datasets.
-
- Added VTU output of boundary elements and attributes and parallel VTU (PVTU)
-  output of parallel meshes for visualization using ParaView.
+Discretization improvements
+---------------------------
+- Added support for simplices in GSLIB-FindPoints.

 Improved testing
 ----------------
@@ -281,41 +44,11 @@ Improved testing
  triggered only by LLNL developers, see .gitlab-ci.yml, the .gitlab directory
  and the updated CONTRIBUTING.md file.

- Added additional testing for convergence, the parallel mesh I/O, and for the
-  libCEED integration in MFEM in the tests/ directory.
-
- Upgraded the Catch unit test framework from version 1.6.1 to version 2.13.0.
-
 Miscellaneous
 -------------
- Renamed "Backend::DEBUG" to "Backend::DEBUG_DEVICE" to avoid conflicts,
-  as DEBUG is sometimes used as a macro.
-
- Added a new IterativeSolverMonitor class that allows to monitor the residual
-  and solution with an IterativeSolver after every iteration.
-
- Added power method to iteratively estimate the largest eigenvalue and the
-  corresponding eigenvector of an operator.
-
- Added support for face integrals on the boundaries of NURBS meshes.
-
 - In SLISolver, changed the residual inner product from (Br,r) to (Br,Br) so the
  solver can work with non-SPD preconditioner B.

- Added new coefficient and vector coefficient classes for QuadratureFunctions,
-  with new LinearForm integrators which use them.
-
- The integration order used in the ComputeLpError and ComputeElementLpError
-  methods of class GridFunction has been increased.
-
- Change the IntegrationRule inside VectorDiffusionIntegrator to use the same
-  quadrature as DiffusionIntegrator.
-
- The README.html files previously included in several source directories have
-  been removed. Use the corresponding pages at mfem.org instead.
-
- Various other simplifications, extensions, and bugfixes in the code.
-

 Version 4.1, released on March 10, 2020
 =======================================
@@ -646,7 +379,7 @@ Other meshing improvements
  follows precisely the paper:

     D. Arnold, A. Mukherjee, and L. Pouly, "Locally Adapted Tetrahedral Meshes
-     Using Bisection", SIAM J. Sci. Comput. 22 (2000), 431-448.
+     Using Bisection", SIAM J. Sci. Comput. 22 (2000), 431–448.

  This guarantees that the shape regularity of the elements will be preserved
  under refinement.
@@ -791,7 +524,7 @@ Discretization improvements

 - New specialized time integrators: symplectic integrators of orders 1-4 for
  systems of first order ODEs derived from a Hamiltonian and generalized-alpha
-  ODE solver for the filtered Navier-Stokes equations with stabilization. See
+  ODE solver for the filtered Navier–Stokes equations with stabilization. See
  classes SIASolver and GeneralizedAlphaSolver in linalg/ode.hpp.

 - Inherit finite element classes from the new base class TensorBasisElement,
@@ -1281,7 +1014,7 @@ New and improved linear solvers
  it can only be enabled along with MFEM_USE_MPI. When MFEM is configured with
  MFEM_USE_SUPERLU, one also needs to alter the version of METIS, since SuperLU
  requires ParMETIS (which comes packaged with a serial version of METIS).  See
-  http://crd-legacy.lbl.gov/~xiaoye/SuperLU for SuperLU_DIST details.
+  http://http://crd-legacy.lbl.gov/~xiaoye/SuperLU for SuperLU_DIST details.

 - Added a wrapper for the KLU solver in SuiteSparse see
  http://faculty.cse.tamu.edu/davis/suitesparse.html for details of KLU.
@@ -9,8 +9,7 @@
 # terms of the BSD-3 license. We welcome feedback and contributions, see file
 # CONTRIBUTING.md for details.

-# The variable CMAKE_CXX_STANDARD and related were introduced in CMake v3.1
-cmake_minimum_required(VERSION 3.1)
+cmake_minimum_required(VERSION 2.8.11)
 set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
  "Path to optional user configuration file.")

@@ -51,7 +50,7 @@ project(mfem NONE)
 # Current version of MFEM, see also `makefile`.
 #   mfem_VERSION = (string)
 #   MFEM_VERSION = (int)   [automatically derived from mfem_VERSION]
-set(${PROJECT_NAME}_VERSION 4.2.1)
+set(${PROJECT_NAME}_VERSION 4.1.1)

 # Prohibit in-source build
 if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
@@ -90,38 +89,8 @@ enable_language(CXX)
 if (MFEM_USE_CUDA)
   # MFEM_USE_CUDA requires CMake 3.8 or newer (for direct CUDA support)
   cmake_minimum_required(VERSION 3.8 FATAL_ERROR)
-   # Use ${CMAKE_CXX_COMPILER} as the cuda host compiler.
-   if (NOT CMAKE_CUDA_HOST_COMPILER)
-      set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
-   endif()
   enable_language(CUDA)
-   set(CMAKE_CUDA_STANDARD 11)
-   set(CMAKE_CUDA_STANDARD_REQUIRED ON)
-   set(CMAKE_CUDA_EXTENSIONS OFF)
-   set(CUDA_FLAGS "--expt-extended-lambda")
-   if (CMAKE_VERSION VERSION_LESS 3.18.0)
-      set(CUDA_FLAGS "-arch=${CUDA_ARCH} ${CUDA_FLAGS}")
-   elseif (NOT CMAKE_CUDA_ARCHITECTURES)
-      string(REGEX REPLACE "^sm_" "" ARCH_NUMBER "${CUDA_ARCH}")
-      if ("${CUDA_ARCH}" STREQUAL "sm_${ARCH_NUMBER}")
-         set(CMAKE_CUDA_ARCHITECTURES "${ARCH_NUMBER}")
-      else()
-         message(FATAL_ERROR "Unknown CUDA_ARCH: ${CUDA_ARCH}")
-      endif()
-   else()
-      set(CUDA_ARCH "CMAKE_CUDA_ARCHITECTURES: ${CMAKE_CUDA_ARCHITECTURES}")
-   endif()
   message(STATUS "Using CUDA architecture: ${CUDA_ARCH}")
-   if (CMAKE_VERSION VERSION_LESS 3.12.0)
-      # CMake versions 3.8 and 3.9 require this to work; 3.10 and 3.11 are not
-      # tested and may not actually need this (but should be ok to keep).
-      set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
-      set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
-   endif()
-   set(CMAKE_CUDA_FLAGS "${CUDA_FLAGS}" CACHE STRING
-       "CUDA flags set for MFEM" FORCE)
-   set(CUSPARSE_FOUND TRUE)
-   set(CUSPARSE_LIBRARIES "cusparse")
 endif()

 if (XSDK_ENABLE_C)
@@ -180,13 +149,9 @@ if (MFEM_USE_MPI)
      message(FATAL_ERROR "PETSc version >= 3.8.0 is required")
    endif()
    set(PETSC_INCLUDE_DIRS ${PETSC_INCLUDES})
-    if (MFEM_USE_SLEPC)
-      find_package(SLEPc REQUIRED config)
-      message(STATUS "Found SLEPc version ${SLEPC_VERSION}")
-    endif()
  endif()
 else()
-  set(PKGS_NEED_MPI SUPERLU MUMPS PETSC SLEPC STRUMPACK PUMI)
+  set(PKGS_NEED_MPI SUPERLU PETSC STRUMPACK PUMI)
  foreach(PKG IN LISTS PKGS_NEED_MPI)
    if (MFEM_USE_${PKG})
      message(STATUS "Disabling package ${PKG} - requires MPI")
@@ -241,14 +206,12 @@ endif()

 # SUNDIALS
 if (MFEM_USE_SUNDIALS)
-  set(SUNDIALS_COMPONENTS CVODES ARKODE KINSOL NVector_Serial)
-  if (MFEM_USE_MPI)
-    list(APPEND SUNDIALS_COMPONENTS NVector_Parallel NVector_MPIPlusX)
+  if (NOT MFEM_USE_MPI)
+    find_package(SUNDIALS REQUIRED NVector_Serial CVODE ARKODE KINSOL)
+  else()
+    find_package(SUNDIALS REQUIRED
+      NVector_Serial NVector_Parallel NVector_ParHyp CVODE ARKODE KINSOL)
  endif()
-  if (MFEM_USE_CUDA)
-    list(APPEND SUNDIALS_COMPONENTS NVector_Cuda)
-  endif()
-  find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
 endif()

 # Mesquite
@@ -265,15 +228,6 @@ if (MFEM_USE_SUPERLU)
  endif()
 endif()

-# MUMPS can only be enabled in parallel
-if (MFEM_USE_MUMPS)
-  if (MFEM_USE_MPI)
-    find_package(MUMPS REQUIRED mumps_common pord)
-  else()
-    message(FATAL_ERROR " *** MUMPS requires that MPI be enabled.")
-  endif()
-endif()
-
 # STRUMPACK can only be enabled in parallel
 if (MFEM_USE_STRUMPACK)
  if (MFEM_USE_MPI)
@@ -307,10 +261,6 @@ if (MFEM_USE_CEED)
  find_package(libCEED REQUIRED)
 endif()

-if (MFEM_USE_AMGX)
-  find_package(AMGX REQUIRED)
-endif()
-
 if (MFEM_USE_CONDUIT)
    find_package(Conduit REQUIRED conduit relay blueprint )
 endif()
@@ -342,6 +292,22 @@ if (MFEM_USE_HIOP)
  # find_package updates HIOP_FOUND, HIOP_INCLUDE_DIRS, HIOP_LIBRARIES
 endif()

+# CUDA
+if (MFEM_USE_CUDA)
+   set(CMAKE_CUDA_STANDARD 11)
+   set(CMAKE_CUDA_STANDARD_REQUIRED ON)
+   set(CMAKE_CUDA_EXTENSIONS OFF)
+   set(CMAKE_CUDA_FLAGS "-arch=${CUDA_ARCH} --expt-extended-lambda"
+       CACHE STRING "CUDA flags set for MFEM" FORCE)
+   if (MFEM_USE_MPI)
+      set(CUDA_CCBIN_COMPILER ${MPI_CXX_COMPILER})
+   else()
+      set(CUDA_CCBIN_COMPILER ${CMAKE_CXX_COMPILER})
+   endif()
+   string(APPEND CMAKE_CUDA_FLAGS " -ccbin ${CUDA_CCBIN_COMPILER}")
+   set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CUDA_CCBIN_COMPILER})
+endif()
+
 # OCCA
 if (MFEM_USE_OCCA)
   find_package(OCCA REQUIRED)
@@ -357,17 +323,6 @@ if (MFEM_USE_UMPIRE)
   find_package(UMPIRE REQUIRED)
 endif()

-# ADIOS2 for parallel I/O
-if (MFEM_USE_ADIOS2)
-   find_package(ADIOS2 REQUIRED)
-endif()
-
-if (MFEM_USE_MKL_CPARDISO)
-  if (MFEM_USE_MPI)
-   find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
-  endif()
-endif()
-
 # MFEM_TIMER_TYPE
 if (NOT DEFINED MFEM_TIMER_TYPE)
  if (APPLE)
@@ -392,9 +347,8 @@ endif()
 #    integers, the METIS header (with 32-bit indices, as used by mfem) needs to
 #    be before SuiteSparse.
 set(MFEM_TPLS MPI_CXX OPENMP BLAS LAPACK METIS HYPRE SuiteSparse SUNDIALS PETSC
-    SLEPC MESQUITE SuperLUDist MUMPS STRUMPACK AXOM CONDUIT Ginkgo GNUTLS GSLIB NETCDF
-    MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE ADIOS2
-    CUSPARSE MKL_CPARDISO AMGX)
+    MESQUITE SuperLUDist STRUMPACK AXOM CONDUIT Ginkgo GNUTLS GSLIB NETCDF
+    MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE)
 # Add all *_FOUND libraries in the variable TPL_LIBRARIES.
 set(TPL_LIBRARIES "")
 set(TPL_INCLUDE_DIRS "")
@@ -1,12 +1,12 @@
 <p align="center">
-<a href="https://mfem.org/"><img alt="mfem" src="https://mfem.org/img/logo-300.png"></a>
+<a href="http://mfem.org/"><img alt="mfem" src="http://mfem.org/img/logo-300.png"></a>
 </p>

 <p align="center">
 <a href="https://github.com/mfem/mfem/blob/master/LICENSE"><img alt="License" src="https://img.shields.io/badge/License-BSD-brightgreen.svg"></a>
 <a href="https://travis-ci.org/mfem/mfem"><img alt="Build Status" src="https://travis-ci.org/mfem/mfem.svg?branch=master"></a>
 <a href="https://ci.appveyor.com/project/mfem/mfem"><img alt="Build Status" src="https://ci.appveyor.com/api/projects/status/19non9sqm6msi2wy?svg=true"></a>
-<a href="https://mfem.github.io/doxygen/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
+<a href="http://mfem.github.io/doxygen/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
 </p>


@@ -26,7 +26,7 @@ request (PR) toward the `mfem:master` branch to propose your contribution. If
 you are planning significant code changes or have questions, you may want to
 open an [issue](https://github.com/mfem/mfem/issues) before issuing a PR. In
 addition to technical contributions, we are also interested in your results and
-[simulation images](https://mfem.org/gallery/), which you can share via a pull
+[simulation images](http://mfem.org/gallery/), which you can share via a pull
 request in the [mfem/web](https://github.com/mfem/web) repo.

 See the [Quick Summary](#quick-summary) section for the main highlights of our
@@ -51,7 +51,7 @@ back to them before issuing pull requests:
 Contributing to MFEM requires knowledge of Git and, likely, finite elements. If
 you are new to Git, see the [GitHub learning
 resources](https://help.github.com/articles/git-and-github-learning-resources/).
-To learn more about the finite element method, see our [FEM page](https://mfem.org/fem).
+To learn more about the finite element method, see our [FEM page](http://mfem.org/fem).

 *By submitting a pull request, you are affirming the [Developer's Certificate of
 Origin](#developers-certificate-of-origin-11) at the end of this file.*
@@ -92,40 +92,36 @@ The MFEM source code has the following structure:
  .
  ├── config
  │   └── cmake
-  │       └── ...
+  │       └── modules
  ├── data
  ├── doc
+  │   └── web
+  │       └── examples
  ├── examples
-  │   ├── amgx
  │   ├── ginkgo
  │   ├── hiop
  │   ├── petsc
  │   ├── pumi
-  │   ├── sundials
-  |   └── superlu
+  │   └── sundials
  ├── fem
  │   └── libceed
  ├── general
  ├── linalg
-  │   └── simd
  ├── mesh
  ├── miniapps
-  │   ├── adjoint
  │   ├── common
  │   ├── electromagnetics
  │   ├── gslib
  │   ├── meshing
-  │   ├── navier
  │   ├── nurbs
  │   ├── performance
  │   ├── tools
  │   └── toys
  └── tests
-      ├── convergence
-      ├── par-mesh-format
      ├── scripts
-      └── unit
-          └── ...
+      ├── unit
+      │   ├── ...
+      └── ...
 ```

 #### Main directories and classes
@@ -135,24 +131,24 @@ classes implementing the finite element, mesh and linear algebra concepts
 respectively.

 - The main mesh classes are:
-  + [`Mesh`](https://mfem.github.io/doxygen/html/classmfem_1_1Mesh.html)
-  + [`NCMesh`](https://mfem.github.io/doxygen/html/classmfem_1_1NCMesh.html)
-  + [`Element`](https://mfem.github.io/doxygen/html/classmfem_1_1Element.html)
-  + [`ElementTransformation`](https://mfem.github.io/doxygen/html/classmfem_1_1ElementTransformation.html)
+  + [`Mesh`](http://mfem.github.io/doxygen/html/classmfem_1_1Mesh.html)
+  + [`NCMesh`](http://mfem.github.io/doxygen/html/classmfem_1_1NCMesh.html)
+  + [`Element`](http://mfem.github.io/doxygen/html/classmfem_1_1Element.html)
+  + [`ElementTransformation`](http://mfem.github.io/doxygen/html/classmfem_1_1ElementTransformation.html)

 - The main finite element classes are:
-  + [`FiniteElement`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
-  + [`FiniteElementCollection`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
-  + [`FiniteElementSpace`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElementSpace.html)
-  + [`GridFunction`](https://mfem.github.io/doxygen/html/classmfem_1_1GridFunction.html)
-  + [`BilinearFormIntegrator`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html)
-  + [`LinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1MixedBilinearForm.html)
+  + [`FiniteElement`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
+  + [`FiniteElementCollection`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
+  + [`FiniteElementSpace`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElementSpace.html)
+  + [`GridFunction`](http://mfem.github.io/doxygen/html/classmfem_1_1GridFunction.html)
+  + [`BilinearFormIntegrator`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html)
+  + [`LinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1MixedBilinearForm.html)

 - The main linear algebra classes and sources are
-  + [`Operator`](https://mfem.github.io/doxygen/html/classmfem_1_1Operator.html) and [`BilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html)
-  + [`Vector`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearForm.html)
-  + [`DenseMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1SparseMatrix.html)
-  + Sparse [smoothers](https://mfem.github.io/doxygen/html/sparsesmoothers_8hpp.html) and linear [solvers](https://mfem.github.io/doxygen/html/solvers_8hpp.html)
+  + [`Operator`](http://mfem.github.io/doxygen/html/classmfem_1_1Operator.html) and [`BilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html)
+  + [`Vector`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearForm.html)
+  + [`DenseMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1SparseMatrix.html)
+  + Sparse [smoothers](http://mfem.github.io/doxygen/html/sparsesmoothers_8hpp.html) and linear [solvers](http://mfem.github.io/doxygen/html/solvers_8hpp.html)

 #### Parallel implementation

@@ -162,13 +158,13 @@ shared geometric entities between different tasks. The parallel source files
 have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.

 - The main parallel classes are
-  + [`ParMesh`](https://mfem.github.io/doxygen/html/solvers_8hpp.html)
-  + [`ParNCMesh`](https://mfem.github.io/doxygen/html/classmfem_1_1ParMesh.html)
-  + [`ParFiniteElementSpace`](https://mfem.github.io/doxygen/html/classmfem_1_1ParFiniteElementSpace.html)
-  + [`ParGridFunction`](https://mfem.github.io/doxygen/html/classmfem_1_1ParGridFunction.html)
-  + [`ParBilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1ParLinearForm.html)
-  + [`HypreParMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreParMatrix.html) and [`HypreParVector`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreParVector.html)
-  + [`HypreSolver`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreSolver.html) and other [hypre classes](https://mfem.github.io/doxygen/html/hypre_8hpp.html)
+  + [`ParMesh`](http://mfem.github.io/doxygen/html/solvers_8hpp.html)
+  + [`ParNCMesh`](http://mfem.github.io/doxygen/html/classmfem_1_1ParMesh.html)
+  + [`ParFiniteElementSpace`](http://mfem.github.io/doxygen/html/classmfem_1_1ParFiniteElementSpace.html)
+  + [`ParGridFunction`](http://mfem.github.io/doxygen/html/classmfem_1_1ParGridFunction.html)
+  + [`ParBilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1ParLinearForm.html)
+  + [`HypreParMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreParMatrix.html) and [`HypreParVector`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreParVector.html)
+  + [`HypreSolver`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreSolver.html) and other [hypre classes](http://mfem.github.io/doxygen/html/hypre_8hpp.html)

 #### GPU and general device support

@@ -177,10 +173,10 @@ backends (CUDA, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
 device/host memory manager.

 - The main device-relevant classes and sources are:
-  + [`Device`](https://mfem.github.io/doxygen/html/device_8hpp.html)
-  + [`MemoryManager`](https://mfem.github.io/doxygen/html/mem_manager_8hpp.html)
-  + the [`MFEM_FORALL`](https://mfem.github.io/doxygen/html/forall_8hpp.html) macro
-  + the [`cuda.hpp`](https://mfem.github.io/doxygen/html/cuda_8hpp.html) and [`occa.hpp`](https://mfem.github.io/doxygen/html/occa_8hpp.html) files
+  + [`Device`](http://mfem.github.io/doxygen/html/device_8hpp.html)
+  + [`MemoryManager`](http://mfem.github.io/doxygen/html/mem_manager_8hpp.html)
+  + the [`MFEM_FORALL`](http://mfem.github.io/doxygen/html/forall_8hpp.html) macro
+  + the [`cuda.hpp`](http://mfem.github.io/doxygen/html/cuda_8hpp.html) and [`occa.hpp`](http://mfem.github.io/doxygen/html/occa_8hpp.html) files

 #### Utilities, building and documentation
 - The `general/` directory contains C++ classes that serve as utilities for
@@ -189,7 +185,7 @@ device/host memory manager.
  Makefile and the CMake build options.
 - The `doc/` directory contains configuration for the Doxygen code documentation
  that can either be built locally or browsed online at
-  https://mfem.github.io/doxygen/html/index.html.
+  http://mfem.github.io/doxygen/html/index.html.

 #### Examples and tests
 - `examples` and `miniapps` respectively gather simple and more fully-featured
@@ -198,7 +194,7 @@ device/host memory manager.
 - The `tests/` directory contains a unit test suite and will later contain more
  tests that run example codes.

-See also the [code overview](https://mfem.org/code-overview/) section on the MFEM
+See also the [code overview](http://mfem.org/code-overview/) section on the MFEM
 website.

 ## GitHub Workflow
@@ -387,13 +383,9 @@ Before a PR can be merged, it should satisfy the following:
    - [ ] Is this a new feature users need to be aware of? New or updated example or miniapp?
    - [ ] Does it make sense to create a new section in the `CHANGELOG` to group with other related features?
 - [ ] Update `INSTALL`:
-    - [ ] Had a new optional library been added? If so, what range of versions of this library are required? (*Make sure the external library is compatible with our BSD license, e.g. it is not licensed under GPL!*)
-    - [ ] Have the version ranges for any required or optional libraries changed?
+    - [ ] Had a new optional library been added? (*Make sure the external library is compatible with our BSD license, e.g. it is not licensed under GPL!*)
    - [ ] Does `make` or `cmake` have a new target?
    - [ ] Did the requirements or the installation process change? *(rare)*
- [ ] Update continuous integration server configurations if necessary (e.g. with new version requirements for each of MFEM's dependencies)
-    - [ ] `.travis.yml`
-    - [ ] `.appveyor.yml`
 - [ ] Update `.gitignore`:
    - [ ] Check if `make distclean; git status` shows any files that were generated from the source by the project (not an IDE) but we don't want to track in the repository.
    - [ ] Add new patterns (just for the new files above) and re-run the above test.
@@ -438,6 +430,7 @@ Before a PR can be merged, it should satisfy the following:
 - [ ] Run `make unittest` to make sure all unit tests pass.
 - [ ] Run the tests in `tests/scripts`.
 - [ ] (LLNL only) After merging:
+   - [ ] Regenerate `README.html` files from companion documentation pull requests.
   - [ ] Update internal tests to include the new features.

 ### Master/Next Workflow
@@ -506,14 +499,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
    - [ ] `makefile`
    - [ ] `CMakeLists.txt`
    - [ ] `doc/CodeDocumentation.conf.in`
- [ ] Check that version requirements for each of MFEM's dependencies are documented in `INSTALL` and up-to-date
- [ ] Check that continuous integration server configurations reflect the dependency version requirements of the new release
-    - [ ] `.travis.yml`
-    - [ ] `.appveyor.yml`
- [ ] Update the `CHANGELOG` to organize all release contributions
- [ ] Review the whole source code once over
- [ ] Ask MFEM-based applications to test the pre-release branch
- [ ] Test on additional platforms and compilers
+- [ ] (LLNL only) Make sure all `README.html` files in the source repo are up to date.
 - [ ] Tag the repository:

  ```
@@ -524,13 +510,14 @@ MFEM uses a `master`/`next`-branch workflow as described below:
 - [ ] Recreate the `next` branch as described in previous section.
 - [ ] Update and push documentation  to `mfem/doxygen`.
 - [ ] Update URL shortlinks:
-    - [ ] Create a shortlink at [http://bit.ly/](http://bit.ly/) for the release tarball, e.g. https://mfem.github.io/releases/mfem-3.1.tgz.
+    - [ ] Create a shortlink at [http://bit.ly/](http://bit.ly/) for the release tarball, e.g. http://mfem.github.io/releases/mfem-3.1.tgz.
    - [ ] (LLNL only) Add and commit the new shortlink in the `links` and `links-mfem` files of the internal `mfem/downloads` repo.
    - [ ] Add the new shortlinks to the MFEM packages in `spack`, `homebrew/science`, `VisIt`, etc.
 - [ ] Update website in `mfem/web` repo:
    - Update version and shortlinks in `src/index.md` and `src/download.md`.
    -  Use [cloc-1.62.pl](http://cloc.sourceforge.net/) and `ls -lh` to estimate the SLOC and the tarball size in `src/download.md`.

+
 ## LLNL Workflow

 ### Mirroring on Bitbucket
@@ -5,7 +5,7 @@
                      | | | | | ||  _||  __/| | | | | |
                      |_| |_| |_||_|   \___||_| |_| |_|

-                               https://mfem.org
+                               http://mfem.org

 The MFEM library has a serial and an MPI-based parallel version, which largely
 share the same code base. The only prerequisite for building the serial version
@@ -19,10 +19,10 @@ requires an MPI C++ compiler, as well as the following external libraries:
  http://glaros.dtc.umn.edu/gkhome/metis/metis/overview

 The hypre dependency can be downloaded as a tarball from GitHub or from the
-project webpage https://www.llnl.gov/casc/hypre. For example, the 2.20.0 release
+project webpage https://www.llnl.gov/casc/hypre. For example, the 2.16.0 release
 of hypre is available at

-   https://github.com/hypre-space/hypre/archive/v2.20.0.tar.gz
+   https://github.com/hypre-space/hypre/archive/v2.16.0.tar.gz

 The METIS dependency can be disabled but that is not generally recommended, see
 the option MFEM_USE_METIS.
@@ -62,7 +62,7 @@ following package managers:

 We also recommend downloading and building the MFEM-based GLVis visualization
 tool which can be used to visualize the meshes and solution in MFEM's examples
-and miniapps. See https://glvis.org and https://mfem.org/building.
+and miniapps. See http://glvis.org and http://mfem.org/building.

 Quick start with GNU make
 =========================
@@ -344,16 +344,6 @@ MFEM_USE_SUPERLU = YES/NO
   SuperLURowLocMatrix a distributed CSR matrix class needed by SuperLU. When
   enabled, this option uses the SUPERLU_* library options, see below.

-MFEM_USE_SUPERLU5 = YES/NO
-   If SuperLU functionality is enabled, use the older 5.1.0 version rather than
-   the more recent 6+ versions.
-
-MFEM_USE_MUMPS = YES/NO
-   Enable MFEM functionality based on the MUMPS library. Currently, this
-   option adds the class MUMPSSolver (a parallel sparse direct solver). 
-   When enabled, this option uses the MUMPS_* library options, see
-   below.
-   
 MFEM_USE_STRUMPACK = YES/NO
   Enable MFEM functionality based on the STRUMPACK sparse direct solver and
   preconditioner through the STRUMPACKSolver and STRUMPACKRowLocMatrix
@@ -366,11 +356,6 @@ MFEM_USE_GINKGO = YES/NO
   https://github.com/ginkgo-project/ginkgo. When enabled, the user can use
   Ginkgo's solvers and preconditioners as shown in examples/ginkgo/.

-MFEM_USE_AMGX = YES/NO
-   Enable MFEM functionality based on the AmgX multigrid library from NVIDIA.
-   Allows the user to use SparseMatrices and HypreParMatrices to solve linear
-   systems with the routines from the AmgX library.
-
 MFEM_USE_GNUTLS = YES/NO
   Enable secure socket support in class socketstream, using the auxiliary
   GnuTLS_* classes, based on the GnuTLS library. This option may be useful in
@@ -398,10 +383,6 @@ MFEM_USE_PETSC = YES/NO
   and other features based on the PETSc package. When enabled, this option uses
   the PETSC_* library options, see below.

-MFEM_USE_SLEPC = YES/NO
-   Enable MFEM eigensolvers based on the SLEPc package. When enabled, this
-   option uses the SLEPC_* library options, see below.
-
 MFEM_USE_MPFR = YES/NO
   MPFR is a library for multiple-precision floating-point computations. This
   option enables the use of MPFR in MFEM, e.g. for precise computation of 1D
@@ -415,12 +396,6 @@ MFEM_USE_SIDRE = YES/NO
   blueprint specification. When enabled, this option requires installation of
   HDF5 (see also MFEM_USE_NETCDF), Conduit and LLNL's axom project.

-MFEM_USE_SIMD = YES/NO
-   Enables the high performance templated classes to use architecture dependent
-   SIMD intrinsics instead of the generic implementation of class AutoSIMD in
-   linalg/simd/auto.hpp. This option should be combined with suitable
-   compiler options, such as -march=native, to enable optimal vectorization.
-
 MFEM_USE_CONDUIT = YES/NO
   Enables support for converting MFEM Mesh and Grid Function objects to and
   from Conduit Mesh Blueprint Descriptions (https://github.com/LLNL/conduit/)
@@ -428,11 +403,6 @@ MFEM_USE_CONDUIT = YES/NO
   an installation of Conduit. If Conduit was built with HDF5 support, it also
   requires an installation of HDF5 (see also MFEM_USE_NETCDF).

-MFEM_USE_ADIOS2 = YES/NO
-   Enables support for ADIOS2, version 2 of the adaptable input output system
-   for scientific data management. In MFEM, ADIOS2 provides parallel I/O with
-   ParaView visualization.
-
 MFEM_USE_ZLIB = YES/NO
   Enables use of on-the-fly gzip compressed streams. With this feature enabled
   (YES), MFEM can compress its output files on-the-fly. In addition, it can
@@ -451,8 +421,6 @@ MFEM_USE_PUMI = YES/NO
   data management system that is capable of handling general non-manifold
   models and effectively supports automated adaptive analysis. PUMI enables
   support for parallel unstructured mesh modifications in MFEM.
-   The develop branch of PUMI repository (https://github.com/SCOREC/core)
-   should be used for most updated features.

 MFEM_USE_UMPIRE = YES/NO
   Enables support for Umpire, a resource management library that allows the
@@ -501,13 +469,6 @@ MFEM_USE_CEED = YES/NO
   library for performant high-order operator evaluation developed by the Center
   for Efficient Exascale Discretizations in the Exascale Computing Project.

-MFEM_USE_MKL_CPARDISO = YES/NO
-   Enables the interface to MKL CPardiso: the Intel MKL Parallel Direct Sparse
-   Solver for Clusters. Make sure to set the correct values for MKL_MPI_WRAPPER
-   and MKL_LIBRARY_SUBDIR as shown in defaults.mk. If you configure MFEM with
-   MFEM_USE_LAPACK=YES, verify that the MKL LAPACK libraries are used. The
-   OpenMP capabilities are disabled at link time.
-
 MFEM_BUILD_TAG = (any value)
   An optional tag to characterize the build. Exported to config/config.mk.
   Can be used to identify the MFEM build from other makefiles.
@@ -531,13 +492,11 @@ The specific libraries and their options are:
 - HYPRE, required for the parallel build, i.e. when MFEM_USE_MPI = YES.
  URL: https://github.com/hypre-space/hypre and https://www.llnl.gov/casc/hypre
  Options: HYPRE_OPT, HYPRE_LIB.
-  Versions: HYPRE >= 2.10.0b.

 - METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
  MFEM_USE_METIS_5 = YES (default is to use METIS 4).
  URL: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
  Options: METIS_OPT, METIS_LIB.
-  Versions: METIS 4.0.3 or 5.1.0.

 - LAPACK (optional), used when MFEM_USE_LAPACK = YES. Alternative, optimized
  implementations can also be used, e.g. the ATLAS project.
@@ -557,38 +516,25 @@ The specific libraries and their options are:
  Beginning with MFEM v3.3, SUNDIALS v2.7.0 is supported.
  Beginning with MFEM v3.3.2, SUNDIALS v3.0.0 is also supported.
  Beginning with MFEM v4.1, only SUNDIALS v5.0.0+ is supported.
-  When MFEM_USE_CUDA is enabled, only SUNDIALS v5.4.0+ is supported.
  If MFEM_USE_MPI is enabled, we expect that SUNDIALS is built with support for
  both MPI and hypre.
-  If MFEM_USE_CUDA is enabled, we expect that SUNDIALS is built with support
-  for CUDA.
  URL: http://computation.llnl.gov/projects/sundials/sundials-software
  Options: SUNDIALS_OPT, SUNDIALS_LIB.
-  Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA support.

 - Mesquite (optional), used when MFEM_USE_MESQUITE = YES.
  URL: http://trilinos.org/oldsite/packages/mesquite
  Options: MESQUITE_OPT, MESQUITE_LIB.
-  The Mesquite support is deprecated and will be removed in the future.

 - SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
  URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
  Options: SUITESPARSE_OPT, SUITESPARSE_LIB.
-  Versions: SuiteSparse >= 4.5.4, older versions may work too.

 - SuperLU_DIST (optional), used when MFEM_USE_SUPERLU = YES. Note that
  SuperLU_DIST requires ParMETIS, which includes METIS 5 in its distribution.
  Both ParMETIS and the included METIS 5 should be built and installed in the
-  same location. If using SuperLU_Dist v5, set MFEM_USE_SUPERLU5=YES.
+  same location.
  URL: http://crd-legacy.lbl.gov/~xiaoye/SuperLU
  Options: SUPERLU_OPT, SUPERLU_LIB.
-  Versions: SuperLU_DIST >= 5.1.0.
-
- MUMPS (optional), used when MFEM_USE_MUMPS = YES. Note that MUMPS
-  requires LAPACK, SCALAPACK and a reordering package such as PORD or METIS.
-  URL: http://mumps.enseeiht.fr
-  Options: MUMPS_OPT, MUMPS_LIB.
-  Versions: MUMPS >= 5.1.1

 - STRUMPACK (optional), used when MFEM_USE_STRUMPACK = YES. Note that STRUMPACK
  requires the PT-Scotch and Scalapack libraries as well as ParMETIS, which
@@ -598,7 +544,6 @@ The specific libraries and their options are:
  2.0.0 or later.
  URL: http://portal.nersc.gov/project/sparse/strumpack
  Options: STRUMPACK_OPT, STRUMPACK_LIB.
-  Versions: STRUMPACK >= 3.0.0.

 - Ginkgo (optional), used when MFEM_USE_GINKGO = YES. Note that Ginkgo needs a
  C++ compiler that supports the C++-11 standard. For additional requirements
@@ -606,17 +551,11 @@ The specific libraries and their options are:
  URL: https://ginkgo-project.github.io
  Options: GINKGO_OPT (Not used), GINKGO_LIB.

- AmgX (optional), used when MFEM_USE_AMGX = YES.
-  URL: https://github.com/NVIDIA/AMGX
-  Options: AMGX_OPT, AMGX_LIB.
-  Versions: AmgX >= 2.1, older versions may work too.
-
 - GnuTLS (optional), used when MFEM_USE_GNUTLS = YES. On most Linux systems,
  GnuTLS is available as a development package, e.g. gnutls-devel. On Mac OS X,
  one can get the library through the Homebrew package manager (http://brew.sh).
  URL: http://gnutls.org
  Options: GNUTLS_OPT, GNUTLS_LIB.
-  Versions: GnuTLS >= 2.12.0, older versions may work too.

 - NetCDF (optional), used when MFEM_USE_NETCDF = YES, required for reading Cubit
  mesh files. Also requires installation of HDF5 and ZLIB, as explained at the
@@ -624,7 +563,6 @@ The specific libraries and their options are:
  don't need the C++ or parallel versions.
  URL: www.unidata.ucar.edu/software/netcdf
  Options: NETCDF_OPT, NETCDF_LIB.
-  Versions: NetCDF >= 4.4.0.

 - PETSc (optional), used when MFEM_USE_PETSC = YES. Version 3.8 or higher of
  the PETSC dev branch is required. The MFEM and PETSc builds can share common
@@ -636,13 +574,6 @@ The specific libraries and their options are:
                --with-shared-libraries=0
  URL: https://www.mcs.anl.gov/petsc
  Options: PETSC_OPT, PETSC_LIB.
-  Versions: PETSc >= 3.8.0.
-
- SLEPc (optional), used when MFEM_USE_SLEPC = YES. SLEPc depends on PETSc and
-  uses some of the PETSc options when compiled.
-  URL: https://slepc.upv.es/
-  Options: SLEPC_OPT, SLEPC_LIB.
-  Versions: SLEPc >= 3.8.0.

 - Sidre (optional), part of LLNL's axom project, used when MFEM_USE_SIDRE = YES.
  Starting with MFEM v4.1, Axom version 0.3.1 or later is required.
@@ -650,29 +581,20 @@ The specific libraries and their options are:
       https://github.com/LLNL/conduit (Conduit)
       https://support.hdfgroup.org/HDF5 (HDF5)
  Options: SIDRE_OPT, SIDRE_LIB.
-  Versions: Axom >= 0.3.1.

 - Conduit (optional), used when MFEM_USE_CONDUIT = YES. Conduit Mesh Blueprint
  support requires Conduit >= v0.3.1 and VisIt >= v2.13.1 to read the output.
  URL: https://github.com/LLNL/conduit (Conduit)
       https://support.hdfgroup.org/HDF5 (HDF5)
  Options: CONDUIT_OPT, CONDUIT_LIB.
-  Versions: Conduit >= 0.3.1.
-
- ADIOS2 (optional) used when MFEM_USE_ADIOS2 = YES.
-  URL: https://adios2.readthedocs.io/
-  Versions: ADIOS >= 2.5.0.

 - PUMI (optional), used when MFEM_USE_PUMI = YES.
  URL: https://scorec.rpi.edu/pumi
-       https://github.com/SCOREC/core
  Options: PUMI_OPT, PUMI_LIB.
-  Versions: PUMI == 2.2.3.

 - HiOp (optional), used when MFEM_USE_HIOP = YES.
  URL: https://github.com/LLNL/hiop
  Options: HIOP_OPT, HIOP_LIB.
-  Versions: HIOP >= 0.1.

 - GSLIB (optional), used when MFEM_USE_GSLIB = YES. The gslib library must be
  built prior to the MFEM build, as follows: download gslib-1.0.5, untar it at
@@ -682,17 +604,10 @@ The specific libraries and their options are:
  MFEM_USE_GSLIB=YES.
  URL: https://github.com/gslib/gslib/archive/v1.0.5.tar.gz
  Options: GSLIB_OPT, GSLIB_LIB.
-  Versions: GSLIB >= 1.0.5.
-
- MKL CPardiso (optional), used when MFEM_USE_MKL_CPARDISO = YES.
-  URL: https://software.intel.com/content/www/us/en/develop/tools/math-kernel-library.html
-  Options: MKL_CPARDISO_OPT, MKL_CPARDISO_LIB.
-  Versions: Intel MKL >= 2020.

 - CUDA (optional), used when MFEM_USE_CUDA = YES.
  URL: https://developer.nvidia.com/cuda-toolkit
  Options: CUDA_CXX, CUDA_ARCH, CUDA_OPT, CUDA_LIB.
-  Versions: CUDA >= 9.1, older versions may work too.

 - HIP (optional), used when MFEM_USE_HIP = YES.
  URL: https://rocm.github.io/ROCmInstall.html
@@ -701,24 +616,21 @@ The specific libraries and their options are:
 - OCCA (optional), used when MFEM_USE_OCCA = YES.
  URL: https://libocca.org
  Options: OCCA_DIR, OCCA_OPT, OCCA_LIB.
-  Versions: OCCA >= 1.1.0.

- libCEED (optional), used when MFEM_USE_CEED = YES.
+- libCEED (optional), used when MFEM_USE_CEED = YES. Requires libCEED v0.6
+  or later version, specifically, git-hash 3d05795 or later.
  URL: https://github.com/CEED/libCEED
       https://ceed.exascaleproject.org/libceed
  Options: CEED_DIR, CEED_OPT, CEED_LIB.
-  Versions: libCEED >= 0.7.

 - RAJA (optional), used when MFEM_USE_RAJA = YES.
-  Beginning with MFEM v4.3, only RAJA v0.13.0+ is supported.
+  Beginning with MFEM v4.1, only RAJA v0.10.0+ is supported.
  URL: https://github.com/LLNL/RAJA
  Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
-  Versions: RAJA >= 0.13.0.

 - Umpire, used when MFEM_USE_UMPIRE = YES.
  URL: https://github.com/LLNL/Umpire
  Options: UMPIRE_DIR, UMPIRE_OPT, UMPIRE_LIB.
-  Versions: Umpire >= 2.0.0.

 - MPFR (optional), used when MFEM_USE_MPFR = YES.
  URL: http://mpfr.org, it depends on the GMP library: https://gmplib.org
@@ -849,10 +761,8 @@ MFEM_TIMER_TYPE - Set automatically, can be overwritten.
 MFEM_USE_MESQUITE
 MFEM_USE_SUITESPARSE
 MFEM_USE_SUPERLU
-MFEM_USE_MUMPS
 MFEM_USE_STRUMPACK
 MFEM_USE_GINKGO
-MFEM_USE_AMGX
 MFEM_USE_GNUTLS
 MFEM_USE_NETCDF
 MFEM_USE_MPFR
@@ -901,12 +811,11 @@ The CMake build system adds auto-detection for the following packages/libraries:

 - HYPRE
 - METIS - The option MFEM_USE_METIS_5 is auto-detected.
- - ParMETIS
 - MESQUITE
 - SuiteSparse
 - SuperLUDist, STRUMPACK
+ - ParMETIS
 - Ginkgo
- - AMGX
 - GNUTLS - Extends the built-in CMake support, to search GNUTLS_DIR as well.
 - NETCDF
 - MPFR
@@ -25,9 +25,7 @@ This project distributes the sources of several external software products with
 their own respective licenses which can be found in their code and attached
 license files. These software products and their licenses are as follows:

-* AmgXWrapper (linalg/amgxsolver.{hpp,cpp}) -- MIT license
-* Catch++ (tests/unit/catch.hpp) -- Boost 1.0 license
 * Gecko (general/gecko.{cpp,hpp}) -- BSD 3-clause license
 * Picojson (fem/picojson.h) -- Custom 2-clause license
-* TinyXML2 (general/tinyxml2.{cpp,h}) -- zlib license
+* Catch++  (tests/unit/catch.hpp) -- Boost 1.0 license
 * Zstr (general/zstr.hpp) -- MIT license
@@ -5,7 +5,7 @@
                      | | | | | ||  _||  __/| | | | | |
                      |_| |_| |_||_|   \___||_| |_| |_|

-                               https://mfem.org
+                               http://mfem.org

 MFEM is a modular parallel C++ library for finite element methods. Its goal is
 to enable high-performance scalable finite element discretization research and
@@ -16,8 +16,8 @@ supercomputers.

 * Copyright and licensing information can be found in files LICENSE and NOTICE.

-* The best starting point for new users interested in MFEM's features is to
-  review the examples and miniapps at https://mfem.org/examples.
+* The best starting point for new users interested in MFEM's features is the
+  interactive documentation in examples/README.html.

 * Developers interested in contributing to the library, should read the
  instructions and documentation in the CONTRIBUTING.md file.
@@ -49,17 +49,17 @@ library. Nonlinear solvers (the Newton method), eigensolvers (LOBPCG), and
 several explicit and implicit Runge-Kutta time integrators are also available.

 MFEM supports MPI-based parallelism throughout the library, and can readily be
-used as a scalable unstructured finite element problem generator. Starting with
-version 4.0, MFEM offers support for GPU acceleration, and programming models,
-such as CUDA, HIP, OCCA, RAJA and OpenMP. MFEM-based applications require
-minimal changes to switch from a serial to a highly-performant MPI-parallel
-version of the code, where they can take advantage of the integrated linear
-solvers from the hypre library. Comprehensive support for other external
-packages, e.g. PETSc, SUNDIALS and libCEED is also included, giving access to
-additional linear and nonlinear solvers, preconditioners, time integrators, etc.
+used as a scalable unstructured finite element problem generator. As of version
+4.0, MFEM offers initial support for GPU acceleration, and programming models,
+such as CUDA, OCCA, RAJA and OpenMP. MFEM-based applications require minimal
+changes to switch from a serial to a high-performing MPI-parallel version of the
+code, where they can take advantage of the integrated linear solvers from the
+hypre library.  Comprehensive support for other external packages, e.g. PETSc
+and SUNDIALS is also included, giving access to many additional linear and
+nonlinear solvers, preconditioners, time integrators, etc.

 For examples of using MFEM, see the examples/ and miniapps/ directories, as well
-as the OpenGL visualization tool GLVis which is available at https://glvis.org.
+as the OpenGL visualization tool GLVis which is available at http://glvis.org.

 MFEM is distributed under the terms of the BSD-3 license. All new contributions
 must be made under this license. See LICENSE and NOTICE for details.
@@ -244,10 +244,6 @@ IF (DEFINED TPL_ENABLE_PETSC)
  SET(MFEM_USE_PETSC ${TPL_ENABLE_PETSC} CACHE BOOL "Enable PETSc support." FORCE)
 ENDIF()

-IF (DEFINED TPL_ENABLE_SLEPC)
-  SET(MFEM_USE_SLEPC ${TPL_ENABLE_SLEPC} CACHE BOOL "Enable SLEPc support." FORCE)
-ENDIF()
-
 IF (DEFINED TPL_ENABLE_MPFR)
  SET(MFEM_USE_MPFR ${TPL_ENABLE_MPFR} CACHE BOOL "Enable MPFR usage." FORCE)
 ENDIF()
@@ -32,16 +32,12 @@ set(MFEM_USE_SUNDIALS @MFEM_USE_SUNDIALS@)
 set(MFEM_USE_MESQUITE @MFEM_USE_MESQUITE@)
 set(MFEM_USE_SUITESPARSE @MFEM_USE_SUITESPARSE@)
 set(MFEM_USE_SUPERLU @MFEM_USE_SUPERLU@)
-set(MFEM_USE_MUMPS @MFEM_USE_MUMPS@)
 set(MFEM_USE_STRUMPACK @MFEM_USE_STRUMPACK@)
 set(MFEM_USE_GINKGO @MFEM_USE_GINKGO@)
-set(MFEM_USE_AMGX @MFEM_USE_AMGX@)
-set(MFEM_USE_HIOP @MFEM_USE_HIOP@)
 set(MFEM_USE_GNUTLS @MFEM_USE_GNUTLS@)
 set(MFEM_USE_GSLIB @MFEM_USE_GSLIB@)
 set(MFEM_USE_NETCDF @MFEM_USE_NETCDF@)
 set(MFEM_USE_PETSC @MFEM_USE_PETSC@)
-set(MFEM_USE_SLEPC @MFEM_USE_SLEPC@)
 set(MFEM_USE_MPFR @MFEM_USE_MPFR@)
 set(MFEM_USE_SIDRE @MFEM_USE_SIDRE@)
 set(MFEM_USE_CONDUIT @MFEM_USE_CONDUIT@)
@@ -51,8 +47,6 @@ set(MFEM_USE_OCCA @MFEM_USE_OCCA@)
 set(MFEM_USE_RAJA @MFEM_USE_RAJA@)
 set(MFEM_USE_CEED @MFEM_USE_CEED@)
 set(MFEM_USE_UMPIRE @MFEM_USE_UMPIRE@)
-set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
-set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)

 set(MFEM_CXX_COMPILER "@CMAKE_CXX_COMPILER@")
 set(MFEM_CXX_FLAGS "@CMAKE_CXX_FLAGS@")
@@ -74,9 +74,6 @@
 // [Deprecated] Enable experimental OpenMP support. Requires MFEM_THREAD_SAFE.
 #cmakedefine MFEM_USE_LEGACY_OPENMP

-// Internal MFEM option: enable group/batch allocation for some small objects.
-#cmakedefine MFEM_USE_MEMALLOC
-
 // Enable MFEM functionality based on the Mesquite library.
 #cmakedefine MFEM_USE_MESQUITE

@@ -86,18 +83,15 @@
 // Enable MFEM functionality based on the SuperLU_DIST library.
 #cmakedefine MFEM_USE_SUPERLU

-// Enable MFEM functionality based on the MUMPS library.
-#cmakedefine MFEM_USE_MUMPS
-
 // Enable MFEM functionality based on the STRUMPACK library.
 #cmakedefine MFEM_USE_STRUMPACK

+// Internal MFEM option: enable group/batch allocation for some small objects.
+#cmakedefine MFEM_USE_MEMALLOC
+
 // Enable functionality based on the Ginkgo library
 #cmakedefine MFEM_USE_GINKGO

-// Enable MFEM functionality based on the AmgX library
-#cmakedefine MFEM_USE_AMGX
-
 // Enable MFEM functionality based on the GnuTLS library
 #cmakedefine MFEM_USE_GNUTLS

@@ -110,15 +104,9 @@
 // Enable MFEM functionality based on the PETSc library
 #cmakedefine MFEM_USE_PETSC

-// Enable MFEM functionality based on the SLEPc library
-#cmakedefine MFEM_USE_SLEPC
-
 // Enable MFEM functionality based on the Sidre library
 #cmakedefine MFEM_USE_SIDRE

-// Enable the use of SIMD in the high performance templated classes
-#cmakedefine MFEM_USE_SIMD
-
 // Enable MFEM functionality based on Conduit
 #cmakedefine MFEM_USE_CONDUIT

@@ -144,9 +132,6 @@
 // Enable MFEM functionality based on the Umpire library
 #cmakedefine MFEM_USE_UMPIRE

-// Enable MFEM functionality based on the ADIOS2 library
-#cmakedefine MFEM_USE_ADIOS2
-
 // Which library functions to use in class StopWatch for measuring time.
 // For a list of the available options, see INSTALL.
 // If not defined, an option is selected automatically.
@@ -162,7 +147,4 @@
 // library.
 #cmakedefine MFEM_USE_SIMMETRIX

-// Enable interface to the MKL CPardiso library.
-#cmakedefine MFEM_USE_MKL_CPARDISO
-
 #endif // MFEM_CONFIG_HEADER
@@ -1,64 +0,0 @@
-#------------------------------------------------------------------------------#
-# Distributed under the OSI-approved Apache License, Version 2.0.  See
-# accompanying file Copyright.txt for details.
-#------------------------------------------------------------------------------#
-#
-# FindADIOS2
-# -----------
-#
-# Try to find the ADIOS2 library
-#
-# This module defines the following variables:
-#
-#   ADIOS2_FOUND        - System has ADIOS2
-#   ADIOS2_INCLUDE_DIRS - The ADIOS2 include directory
-#   ADIOS2_LIBRARIES    - Link these to use ADIOS2
-#
-# and the following imported targets:
-#   ADIOS2::ADIOS2 - The ADIOS2 compression library target
-#
-# You can also set the following variable to help guide the search:
-#   ADIOS2_DIR - The install prefix for ADIOS2 containing the
-#              include and lib folders
-#              Note: this can be set as a CMake variable or an
-#                    environment variable.  If specified as a CMake
-#                    variable, it will override any setting specified
-#                    as an environment variable.
-
-if(NOT ADIOS2_FOUND)
-  if((NOT ADIOS2_DIR) AND (NOT (ENV{ADIOS2_DIR} STREQUAL "")))
-    set(ADIOS2_DIR "$ENV{ADIOS2_DIR}")
-  endif()
-  if(ADIOS2_DIR)
-    set(ADIOS2_INCLUDE_OPTS HINTS ${ADIOS2_DIR}/include NO_DEFAULT_PATHS)
-    set(ADIOS2_LIBRARY_OPTS
-      HINTS ${ADIOS2_DIR}/lib ${ADIOS2_DIR}/lib64
-      NO_DEFAULT_PATHS
-    )
-  endif()
-
-  find_path(ADIOS2_INCLUDE_DIR adios2.h ${ADIOS2_INCLUDE_OPTS})
-
-  # adios2 version 2.5.0
-  find_library(ADIOS2_LIBRARY NAMES adios2 ${ADIOS2_LIBRARY_OPTS})
-
-  # adios2 version 2.6.0 and onwards
-  if(NOT ADIOS2_LIBRARY)
-	find_library(ADIOS2_CXX11_MPI_LIBRARY NAMES adios2_cxx11_mpi ${ADIOS2_LIBRARY_OPTS})
-	find_library(ADIOS2_CXX11_LIBRARY NAMES adios2_cxx11 ${ADIOS2_LIBRARY_OPTS})
-	set(ADIOS2_LIBRARY ${ADIOS2_CXX11_MPI_LIBRARY} ${ADIOS2_CXX11_LIBRARY})
-	if(MFEM_USE_MPI)
-	  add_definitions(-DADIOS2_USE_MPI)
-	endif()
-  endif()
-
-  include(FindPackageHandleStandardArgs)
-  find_package_handle_standard_args(ADIOS2
-    FOUND_VAR ADIOS2_FOUND
-    REQUIRED_VARS ADIOS2_LIBRARY ADIOS2_INCLUDE_DIR
-  )
-  if(ADIOS2_FOUND)
-    set(ADIOS2_INCLUDE_DIRS ${ADIOS2_INCLUDE_DIR})
-    set(ADIOS2_LIBRARIES ${ADIOS2_LIBRARY})
-  endif()
-endif()
@@ -1,20 +0,0 @@
-# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Defines the following variables:
-#   - AMGX_FOUND
-#   - AMGX_LIBRARIES
-#   - AMGX_INCLUDE_DIRS
-
-include(MfemCmakeUtilities)
-set(AMGX_REQUIRED_LIBRARIES cusparse cusolver cublas nvToolsExt)
-mfem_find_package(AMGX AMGX AMGX_DIR "include" "amgx_c.h" "lib" "amgx"
-  "Paths to headers required by AMGX." "Libraries required by AMGX.")
@@ -25,16 +25,16 @@ mfem_find_package(METIS METIS METIS_DIR "include;Lib" "metis.h"

 int main()
 {
-    idx_t n = 10;
-    idx_t nparts = 5;
-    idx_t edgecut;
-    idx_t* partitioning = new idx_t[10];
-    idx_t* I = partitioning,
+    int n = 10;
+    int nparts = 5;
+    int edgecut;
+    int* partitioning = new int[10];
+    int* I = partitioning,
       * J = partitioning;

-    idx_t ncon = 1;
+    int ncon = 1;
    int err;
-    idx_t options[40];
+    int options[40];

    METIS_SetDefaultOptions(options);
    options[10] = 1; // set METIS_OPTION_CONTIG
@@ -1,32 +0,0 @@
-# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Defines the following variables:
-#   - MKL_CPARDISO_FOUND
-#   - MKL_CPARDISO_LIBRARIES
-#   - MKL_CPARDISO_INCLUDE_DIRS
-
-if(NOT MKL_MPI_WRAPPER_LIB)
-  message(FATAL_ERROR "MKL CPardiso enabled but no MKL MPI Wrapper lib specified")
-endif()
-
-if(NOT MKL_LIBRARY_DIR)
-  message(WARNING "Using default MKL library path. Double check the variable MKL_LIBRARY_DIR")
-  set(MKL_LIBRARY_DIR "lib")
-endif()
-
-include(MfemCmakeUtilities)
-mfem_find_package(MKL_CPARDISO MKL_CPARDISO
-    MKL_CPARDISO_DIR "include" mkl_cluster_sparse_solver.h ${MKL_LIBRARY_DIR} mkl_core
-  "Paths to headers required by MKL CPardiso." "Libraries required by MKL CPARDISO."
-  ADD_COMPONENT MKL_LP64 "include" "" ${MKL_LIBRARY_DIR} mkl_intel_lp64
-  ADD_COMPONENT MKL_SEQUENTIAL "include" "" ${MKL_LIBRARY_DIR} mkl_sequential
-  ADD_COMPONENT MKL_MPI_WRAPPER "include" "" ${MKL_LIBRARY_DIR} ${MKL_MPI_WRAPPER_LIB})
@@ -1,23 +0,0 @@
-# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Sets the following variables:
-#   - MUMPS_FOUND
-#   - MUMPS_INCLUDE_DIRS
-#   - MUMPS_LIBRARIES
-
-include(MfemCmakeUtilities)
-mfem_find_package(MUMPS MUMPS MUMPS_DIR
-  "include" dmumps_c.h "lib" dmumps
-  "Paths to headers required by MUMPS."
-  "Libraries required by MUMPS."
-  ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
-  ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
@@ -1,44 +0,0 @@
-# Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Sets the following variables:
-#   - SLEPC_FOUND
-#   - SLEPC_INCLUDE_DIRS
-#   - SLEPC_LIBRARIES
-
-set(SLEPc_REQUIRED_PACKAGES "PETSC" CACHE STRING
-  "Additional packages required by SLEPc")
-
-include(MfemCmakeUtilities)
-mfem_find_package(SLEPc SLEPC SLEPC_DIR
-  "include" "slepceps.h"
-  "${PETSC_ARCH}/lib" "slepc" # add NAMES_PER_DIR?
-  "Paths to headers required by SLEPc."
-  "Libraries required by SLEPc."
-  ADD_COMPONENT "config" "${PETSC_ARCH}/include" "slepcconf.h" "" ""
-  CHECK_BUILD SLEPC_VERSION_OK TRUE
-"
-#include \"petsc.h\"
-#include \"slepceps.h\"
-int main()
-{
-  PetscErrorCode ierr;
-  int argc = 0;
-  char** argv = NULL;
-  ierr = SlepcInitialize(&argc, &argv, PETSC_NULL, PETSC_NULL);
-  EPS eps;
-  ierr = EPSCreate(PETSC_COMM_SELF, &eps); CHKERRQ(ierr);
-  ierr = EPSDestroy(&eps); CHKERRQ(ierr);
-  ierr = SlepcFinalize(); CHKERRQ(ierr);
-  return 0;
-}
-"
-  )
@@ -20,15 +20,10 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
  "Paths to headers required by SUNDIALS." "Libraries required by SUNDIALS."
  ADD_COMPONENT NVector_Serial
    "include" nvector/nvector_serial.h "lib" sundials_nvecserial
-  ADD_COMPONENT NVector_Cuda
-    "include" nvector/nvector_cuda.h "lib" sundials_nveccuda
-  ADD_COMPONENT NVector_ParHyp
-    "include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
  ADD_COMPONENT NVector_Parallel
    "include" nvector/nvector_parallel.h "lib" sundials_nvecparallel
-  ADD_COMPONENT NVector_MPIPlusX
-    "include" nvector/nvector_mpiplusx.h "lib" sundials_nvecmpiplusx
+  ADD_COMPONENT NVector_ParHyp
+    "include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
  ADD_COMPONENT CVODE "include" cvode/cvode.h "lib" sundials_cvode
-  ADD_COMPONENT CVODES "include" cvodes/cvodes.h "lib" sundials_cvodes
  ADD_COMPONENT ARKODE "include" arkode/arkode.h "lib" sundials_arkode
  ADD_COMPONENT KINSOL "include" kinsol/kinsol.h "lib" sundials_kinsol)
@@ -128,15 +128,7 @@ function(add_mfem_miniapp MFEM_EXE_NAME)
  if (MFEM_USE_CUDA)
    set_property(SOURCE ${MAIN_LIST} ${EXTRA_SOURCES_LIST}
      PROPERTY LANGUAGE CUDA)
-    if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.12.0)
-      list(TRANSFORM EXTRA_OPTIONS_LIST PREPEND "-Xcompiler=")
-    else()
-      set(LIST_)
-      foreach(item IN LISTS EXTRA_OPTIONS_LIST)
-        list(APPEND LIST_ "-Xcompiler=${item}")
-      endforeach()
-      set(EXTRA_OPTIONS_LIST ${LIST_})
-    endif()
+    list(TRANSFORM EXTRA_OPTIONS_LIST PREPEND "-Xcompiler=")
  endif()

  # Actually add the executable
@@ -235,7 +227,7 @@ endfunction(mfem_find_component)
 #   code snippets. Additionally, a list of required/optional/alternative
 #   packages (given by ${Name}_REQUIRED_PACKAGES) are searched for and added to
 #   the ${Prefix}_INCLUDE_DIRS and ${Prefix}_LIBRARIES lists. The variable
-#   ${Name}_REQUIRED_LIBRARIES can be set to specify any additional libraries
+#   ${Name}_REQUIRED_LIBRARIES can be set to spcecify any additional libraries
 #   that are needed. This function defines the following CACHE variables:
 #
 #      ${Prefix}_FOUND
@@ -733,16 +725,15 @@ function(mfem_export_mk_files)
    set(shared_link_flag "-Wl,-rpath,")
  endif()

-  # Convert Boolean vars to YES/NO without writing the values to cache
+  # Convert Boolean vars to YES/NO without writting the values to cache
  set(CONFIG_MK_BOOL_VARS MFEM_USE_MPI MFEM_USE_METIS MFEM_USE_METIS_5
      MFEM_DEBUG MFEM_USE_EXCEPTIONS MFEM_USE_ZLIB MFEM_USE_LIBUNWIND
      MFEM_USE_LAPACK MFEM_THREAD_SAFE MFEM_USE_OPENMP MFEM_USE_LEGACY_OPENMP
      MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_MESQUITE MFEM_USE_SUITESPARSE
-      MFEM_USE_SUPERLU MFEM_USE_STRUMPACK MFEM_USE_GINKGO MFEM_USE_AMGX
-      MFEM_USE_GNUTLS MFEM_USE_GSLIB MFEM_USE_NETCDF MFEM_USE_PETSC
-      MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE MFEM_USE_CONDUIT MFEM_USE_PUMI
-      MFEM_USE_CUDA MFEM_USE_OCCA MFEM_USE_RAJA MFEM_USE_UMPIRE MFEM_USE_SIMD
-      MFEM_USE_ADIOS2)
+      MFEM_USE_SUPERLU MFEM_USE_STRUMPACK MFEM_USE_GNUTLS
+      MFEM_USE_GSLIB MFEM_USE_NETCDF MFEM_USE_PETSC MFEM_USE_MPFR MFEM_USE_SIDRE
+      MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_CUDA MFEM_USE_OCCA MFEM_USE_RAJA
+      MFEM_USE_UMPIRE)
  foreach(var ${CONFIG_MK_BOOL_VARS})
    if (${var})
      set(${var} YES)
@@ -752,15 +743,8 @@ function(mfem_export_mk_files)
  endforeach()
  # TODO: Add support for MFEM_USE_CUDA=YES
  set(MFEM_CXX ${CMAKE_CXX_COMPILER})
-  set(MFEM_HOST_CXX ${MFEM_CXX})
  set(MFEM_CPPFLAGS "")
-  get_target_property(cxx_std mfem CXX_STANDARD)
-  # For now, we ignore the setting of the CXX_EXTENSIONS property. If this
-  # property is set, then we need to use a variable like:
-  #    CMAKE_CXX11_EXTENSION_COMPILE_OPTION
-  set(cxx_std_flag ${CMAKE_CXX${cxx_std}_STANDARD_COMPILE_OPTION})
-  string(STRIP
-         "${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
+  string(STRIP "${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
         MFEM_CXXFLAGS)
  set(MFEM_TPLFLAGS "")
  foreach(dir ${MFEM_TPL_INCLUDE_DIRS})
@@ -826,7 +810,7 @@ function(mfem_export_mk_files)
      string(REGEX REPLACE "^SCOREC::" "" libname ${pumilib})
      string(FIND "${pumilib}" ".a" staticlib)
      string(FIND "${pumilib}" ".so" sharedlib)
-      find_library(lib ${libname} PATHS ${PUMI_DIR}/lib NO_DEFAULT_PATH)
+      find_library(lib ${libname} PATHS ${PUMI_DIR}/lib NO_DEFUALT_PATH)
      if (NOT "${sharedlib}" MATCHES "-1" OR
          NOT "${staticlib}" MATCHES "-1"   )
        set(MFEM_EXT_LIBS "${pumilib} ${MFEM_EXT_LIBS}")
@@ -34,12 +34,6 @@
 // Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
 #define _USE_MATH_DEFINES
 #endif
-// On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
-// the following macro allows us to get M_PI and some needed functions, e.g.
-// posix_memalign(), strdup(), strerror_r().
-#ifdef __CYGWIN__
-#define _XOPEN_SOURCE 600
-#endif

 // Check dependencies:

@@ -48,21 +42,12 @@
 #ifdef MFEM_USE_SUPERLU
 #error Building with SuperLU_DIST (MFEM_USE_SUPERLU=YES) requires MPI (MFEM_USE_MPI=YES)
 #endif
-#ifdef MFEM_USE_MUMPS
-#error Building with MUMPS (MFEM_USE_MUMPS=YES) requires MPI (MFEM_USE_MPI=YES)
-#endif
 #ifdef MFEM_USE_STRUMPACK
 #error Building with STRUMPACK (MFEM_USE_STRUMPACK=YES) requires MPI (MFEM_USE_MPI=YES)
 #endif
-#ifdef MFEM_USE_MKL_CPARDISO
-#error Building with MKL CPARDISO (MFEM_USE_MKL_CPARDISO=YES) requires MPI (MFEM_USE_MPI=YES)
-#endif
 #ifdef MFEM_USE_PETSC
 #error Building with PETSc (MFEM_USE_PETSC=YES) requires MPI (MFEM_USE_MPI=YES)
 #endif
-#ifdef MFEM_USE_SLEPC
-#error Building with SLEPc (MFEM_USE_SLEPC=YES) requires MPI (MFEM_USE_MPI=YES)
-#endif
 #ifdef MFEM_USE_PUMI
 #error Building with PUMI (MFEM_USE_PUMI=YES) requires MPI (MFEM_USE_MPI=YES)
 #endif
@@ -93,11 +93,6 @@

 // Enable MFEM functionality based on the SuperLU library.
 // #define MFEM_USE_SUPERLU
-// #define MFEM_USE_SUPERLU5
-
-// Enable MFEM functionality based on the MUMPS library.
-// #define MFEM_USE_MUMPS
-// #define MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@

 // Enable MFEM functionality based on the STRUMPACK library.
 // #define MFEM_USE_STRUMPACK
@@ -105,18 +100,12 @@
 // Enable MFEM features based on the Ginkgo library
 // #define MFEM_USE_GINKGO

-// Enable MFEM functionality based on the AmgX library.
-// #define MFEM_USE_AMGX
-
 // Enable secure socket streams based on the GNUTLS library
 // #define MFEM_USE_GNUTLS

 // Enable Sidre support
 // #define MFEM_USE_SIDRE

-// Enable the use of SIMD in the high performance templated classes
-// #define MFEM_USE_SIMD
-
 // Enable Conduit support
 // #define MFEM_USE_CONDUIT

@@ -126,9 +115,6 @@
 // Enable functionality based on the PETSc library
 // #define MFEM_USE_PETSC

-// Enable functionality based on the SLEPc library
-// #define MFEM_USE_SLEPC
-
 // Enable functionality based on the MPFR library.
 // #define MFEM_USE_MPFR

@@ -161,9 +147,6 @@
 // Enable functionality based on the Umpire library.
 // #define MFEM_USE_UMPIRE

-// Enable IO functionality based on the ADIOS2 library.
-// #define MFEM_USE_ADIOS2
-
 // Version of HYPRE used for building MFEM.
 // #define MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@

@@ -171,7 +154,4 @@
 // library.
 // #define MFEM_USE_SIMMETRIX

-// Enable interface to the MKL CPardiso library.
-// #define MFEM_USE_MKL_CPARDISO
-
 #endif // MFEM_CONFIG_HEADER
@@ -32,15 +32,11 @@ MFEM_USE_SUNDIALS      = @MFEM_USE_SUNDIALS@
 MFEM_USE_MESQUITE      = @MFEM_USE_MESQUITE@
 MFEM_USE_SUITESPARSE   = @MFEM_USE_SUITESPARSE@
 MFEM_USE_SUPERLU       = @MFEM_USE_SUPERLU@
-MFEM_USE_SUPERLU5      = @MFEM_USE_SUPERLU5@
-MFEM_USE_MUMPS         = @MFEM_USE_MUMPS@
 MFEM_USE_STRUMPACK     = @MFEM_USE_STRUMPACK@
 MFEM_USE_GINKGO        = @MFEM_USE_GINKGO@
-MFEM_USE_AMGX          = @MFEM_USE_AMGX@
 MFEM_USE_GNUTLS        = @MFEM_USE_GNUTLS@
 MFEM_USE_NETCDF        = @MFEM_USE_NETCDF@
 MFEM_USE_PETSC         = @MFEM_USE_PETSC@
-MFEM_USE_SLEPC         = @MFEM_USE_SLEPC@
 MFEM_USE_MPFR          = @MFEM_USE_MPFR@
 MFEM_USE_SIDRE         = @MFEM_USE_SIDRE@
 MFEM_USE_CONDUIT       = @MFEM_USE_CONDUIT@
@@ -53,13 +49,9 @@ MFEM_USE_RAJA          = @MFEM_USE_RAJA@
 MFEM_USE_OCCA          = @MFEM_USE_OCCA@
 MFEM_USE_CEED          = @MFEM_USE_CEED@
 MFEM_USE_UMPIRE        = @MFEM_USE_UMPIRE@
-MFEM_USE_SIMD          = @MFEM_USE_SIMD@
-MFEM_USE_ADIOS2        = @MFEM_USE_ADIOS2@
-MFEM_USE_MKL_CPARDISO  = @MFEM_USE_MKL_CPARDISO@

 # Compiler, compile options, and link options
 MFEM_CXX       = @MFEM_CXX@
-MFEM_HOST_CXX  = @MFEM_HOST_CXX@
 MFEM_CPPFLAGS  = @MFEM_CPPFLAGS@
 MFEM_CXXFLAGS  = @MFEM_CXXFLAGS@
 MFEM_TPLFLAGS  = @MFEM_TPLFLAGS@
@@ -33,16 +33,12 @@ option(MFEM_USE_SUNDIALS "Enable SUNDIALS usage" OFF)
 option(MFEM_USE_MESQUITE "Enable MESQUITE usage" OFF)
 option(MFEM_USE_SUITESPARSE "Enable SuiteSparse usage" OFF)
 option(MFEM_USE_SUPERLU "Enable SuperLU_DIST usage" OFF)
-option(MFEM_USE_SUPERLU5 "Use the old SuperLU_DIST 5.1 version" OFF)
-option(MFEM_USE_MUMPS "Enable MUMPS usage" OFF)
 option(MFEM_USE_STRUMPACK "Enable STRUMPACK usage" OFF)
 option(MFEM_USE_GINKGO "Enable Ginkgo usage" OFF)
-option(MFEM_USE_AMGX "Enable AmgX usage" OFF)
 option(MFEM_USE_GNUTLS "Enable GNUTLS usage" OFF)
 option(MFEM_USE_GSLIB "Enable GSLIB usage" OFF)
 option(MFEM_USE_NETCDF "Enable NETCDF usage" OFF)
 option(MFEM_USE_PETSC "Enable PETSc support." OFF)
-option(MFEM_USE_SLEPC "Enable SLEPc support." OFF)
 option(MFEM_USE_MPFR "Enable MPFR usage." OFF)
 option(MFEM_USE_SIDRE "Enable Axom/Sidre usage" OFF)
 option(MFEM_USE_CONDUIT "Enable Conduit usage" OFF)
@@ -53,9 +49,6 @@ option(MFEM_USE_OCCA "Enable OCCA" OFF)
 option(MFEM_USE_RAJA "Enable RAJA" OFF)
 option(MFEM_USE_CEED "Enable CEED" OFF)
 option(MFEM_USE_UMPIRE "Enable Umpire" OFF)
-option(MFEM_USE_SIMD "Enable use of SIMD intrinsics" OFF)
-option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
-option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)

 set(MFEM_MPI_NP 4 CACHE STRING "Number of processes used for MPI tests")

@@ -92,8 +85,6 @@ set(METIS_DIR "${MFEM_DIR}/../metis-4.0" CACHE PATH "Path to the METIS library."

 set(LIBUNWIND_DIR "" CACHE PATH "Path to Libunwind.")

-# For sundials_nvecmpiplusx and nvecparallel remember to build with MPI_ENABLE=ON
-# and modify cmake variables for hypre for sundials
 set(SUNDIALS_DIR "${MFEM_DIR}/../sundials-5.0.0/instdir" CACHE PATH
    "Path to the SUNDIALS library.")
 # The following may be necessary, if SUNDIALS was built with KLU:
@@ -113,21 +104,12 @@ set(ParMETIS_DIR "${MFEM_DIR}/../parmetis-4.0.3" CACHE PATH
 set(ParMETIS_REQUIRED_PACKAGES "METIS" CACHE STRING
    "Additional packages required by ParMETIS.")

-set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_6.3.1" CACHE PATH
+set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_5.1.0" CACHE PATH
    "Path to the SuperLU_DIST library.")
 # SuperLU_DIST may also depend on "OpenMP", depending on how it was compiled.
 set(SuperLUDist_REQUIRED_PACKAGES "MPI" "BLAS" "ParMETIS" CACHE STRING
    "Additional packages required by SuperLU_DIST.")

-set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.2.0" CACHE PATH
-    "Path to the MUMPS library.")
-# Packages required by MUMPS, depending on how it was compiled.
-set(MUMPS_REQUIRED_PACKAGES "MPI" "BLAS" "METIS" "ScaLAPACK" CACHE STRING
-    "Additional packages required by MUMPS.")    
-# If the MPI package does not find all required Fortran libraries:
-# set(MUMPS_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
-#     "Additional libraries required by MUMPS.")    
-
 set(STRUMPACK_DIR "${MFEM_DIR}/../STRUMPACK-build" CACHE PATH
    "Path to the STRUMPACK library.")
 # STRUMPACK may also depend on "OpenMP", depending on how it was compiled.
@@ -158,8 +140,6 @@ set(ScaLAPACK_TARGET_NAMES scalapack)

 set(Ginkgo_DIR "${MFEM_DIR}/../ginkgo" CACHE PATH "Path to the Ginkgo library.")

-set(AMGX_DIR "${MFEM_DIR}/../amgx" CACHE PATH "Path to AmgX")
-
 set(GNUTLS_DIR "" CACHE PATH "Path to the GnuTLS library.")

 set(GSLIB_DIR "" CACHE PATH "Path to the GSLIB library.")
@@ -173,10 +153,6 @@ set(PETSC_DIR "${MFEM_DIR}/../petsc" CACHE PATH
    "Path to the PETSc main directory.")
 set(PETSC_ARCH "arch-linux2-c-debug" CACHE STRING "PETSc build architecture.")

-set(SLEPC_DIR "${MFEM_DIR}/../slepc" CACHE PATH
-    "Path to the SLEPc main directory.")
-set(SLEPC_ARCH "arch-linux2-c-debug" CACHE STRING "SLEPC build architecture.")
-
 set(MPFR_DIR "" CACHE PATH "Path to the MPFR library.")

 set(CONDUIT_DIR "${MFEM_DIR}/../conduit" CACHE PATH
@@ -195,10 +171,6 @@ set(HIOP_DIR "${MFEM_DIR}/../hiop/install" CACHE STRING
 set(HIOP_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
    "Packages that HiOp depends on.")

-set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
-set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
-set(MKL_LIBRARY_DIR "" CACHE STRING "Custom library subdirectory")
-
 set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
 set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
 set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
@@ -53,8 +53,6 @@ HIP_CXX = hipcc
 # gfx900, gfx1010, etc.
 HIP_ARCH = gfx900
 HIP_FLAGS = --amdgpu-target=$(HIP_ARCH)
-HIP_XCOMPILER =
-HIP_XLINKER   = -Wl,

 ifneq ($(NOTMAC),)
   AR      = ar
@@ -122,15 +120,11 @@ MFEM_USE_SUNDIALS      = NO
 MFEM_USE_MESQUITE      = NO
 MFEM_USE_SUITESPARSE   = NO
 MFEM_USE_SUPERLU       = NO
-MFEM_USE_SUPERLU5      = NO
-MFEM_USE_MUMPS         = NO
 MFEM_USE_STRUMPACK     = NO
 MFEM_USE_GINKGO        = NO
-MFEM_USE_AMGX          = NO
 MFEM_USE_GNUTLS        = NO
 MFEM_USE_NETCDF        = NO
 MFEM_USE_PETSC         = NO
-MFEM_USE_SLEPC         = NO
 MFEM_USE_MPFR          = NO
 MFEM_USE_SIDRE         = NO
 MFEM_USE_CONDUIT       = NO
@@ -143,25 +137,12 @@ MFEM_USE_RAJA          = NO
 MFEM_USE_OCCA          = NO
 MFEM_USE_CEED          = NO
 MFEM_USE_UMPIRE        = NO
-MFEM_USE_SIMD          = NO
-MFEM_USE_ADIOS2        = NO
-MFEM_USE_MKL_CPARDISO  = NO
-
-# MPI library compile and link flags
-# These settings are used only when building MFEM with MPI + HIP
-ifeq ($(MFEM_USE_MPI)$(MFEM_USE_HIP),YESYES)
-   # We determine MPI_DIR assuming $(MPICXX) is in $(MPI_DIR)/bin
-   MPI_DIR := $(patsubst %/,%,$(dir $(shell which $(MPICXX))))
-   MPI_DIR := $(patsubst %/,%,$(dir $(MPI_DIR)))
-   MPI_OPT = -I$(MPI_DIR)/include
-   MPI_LIB = -L$(MPI_DIR)/lib $(XLINKER)-rpath,$(MPI_DIR)/lib -lmpi
-endif

 # Compile and link options for zlib.
 ZLIB_DIR =
 ZLIB_OPT = $(if $(ZLIB_DIR),-I$(ZLIB_DIR)/include)
 ZLIB_LIB = $(if $(ZLIB_DIR),$(ZLIB_RPATH) -L$(ZLIB_DIR)/lib ,)-lz
-ZLIB_RPATH = $(XLINKER)-rpath,$(ZLIB_DIR)/lib
+ZLIB_RPATH = -Wl,-rpath,$(ZLIB_DIR)/lib

 LIBUNWIND_OPT = -g
 LIBUNWIND_LIB = $(if $(NOTMAC),-lunwind -ldl,)
@@ -172,7 +153,7 @@ HYPRE_OPT = -I$(HYPRE_DIR)/include
 HYPRE_LIB = -L$(HYPRE_DIR)/lib -lHYPRE

 # METIS library configuration
-ifeq ($(MFEM_USE_SUPERLU)$(MFEM_USE_STRUMPACK)$(MFEM_USE_MUMPS),NONONO)
+ifeq ($(MFEM_USE_SUPERLU)$(MFEM_USE_STRUMPACK),NONO)
   ifeq ($(MFEM_USE_METIS_5),NO)
     METIS_DIR = @MFEM_DIR@/../metis-4.0
     METIS_OPT =
@@ -205,19 +186,13 @@ OPENMP_LIB =
 POSIX_CLOCKS_LIB = -lrt

 # SUNDIALS library configuration
-# For sundials_nvecmpiplusx and nvecparallel remember to build with MPI_ENABLE=ON
-# and modify cmake variables for hypre for sundials
-SUNDIALS_DIR    = @MFEM_DIR@/../sundials-5.0.0/instdir
-SUNDIALS_OPT    = -I$(SUNDIALS_DIR)/include
-SUNDIALS_LIBDIR = $(wildcard $(SUNDIALS_DIR)/lib*)
-SUNDIALS_LIB    = $(XLINKER)-rpath,$(SUNDIALS_LIBDIR) -L$(SUNDIALS_LIBDIR)\
- -lsundials_arkode -lsundials_cvodes -lsundials_nvecserial -lsundials_kinsol
+SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
+SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
+SUNDIALS_LIB = -Wl,-rpath,$(SUNDIALS_DIR)/lib64 -L$(SUNDIALS_DIR)/lib64\
+ -lsundials_arkode -lsundials_cvode -lsundials_nvecserial -lsundials_kinsol

 ifeq ($(MFEM_USE_MPI),YES)
-   SUNDIALS_LIB += -lsundials_nvecparallel -lsundials_nvecmpiplusx
-endif
-ifeq ($(MFEM_USE_CUDA),YES)
-   SUNDIALS_LIB += -lsundials_nveccuda
+   SUNDIALS_LIB += -lsundials_nvecparhyp -lsundials_nvecparallel
 endif
 # If SUNDIALS was built with KLU:
 # MFEM_USE_SUITESPARSE = YES
@@ -231,22 +206,14 @@ MESQUITE_LIB = -L$(MESQUITE_DIR)/lib -lmesquite
 LIB_RT = $(if $(NOTMAC),-lrt,)
 SUITESPARSE_DIR = @MFEM_DIR@/../SuiteSparse
 SUITESPARSE_OPT = -I$(SUITESPARSE_DIR)/include
-SUITESPARSE_LIB = $(XLINKER)-rpath,$(SUITESPARSE_DIR)/lib\
- -L$(SUITESPARSE_DIR)/lib -lklu -lbtf -lumfpack -lcholmod -lcolamd -lamd -lcamd\
- -lccolamd -lsuitesparseconfig $(LIB_RT) $(METIS_LIB) $(LAPACK_LIB)
+SUITESPARSE_LIB = -Wl,-rpath,$(SUITESPARSE_DIR)/lib -L$(SUITESPARSE_DIR)/lib\
+ -lklu -lbtf -lumfpack -lcholmod -lcolamd -lamd -lcamd -lccolamd\
+ -lsuitesparseconfig $(LIB_RT) $(METIS_LIB) $(LAPACK_LIB)

 # SuperLU library configuration
-ifeq ($(MFEM_USE_SUPERLU5),YES)
-   SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_5.1.0
-   SUPERLU_OPT = -I$(SUPERLU_DIR)/include
-   SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib\
-      -lsuperlu_dist_5.1.0
-else
-   SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_6.3.1
-   SUPERLU_OPT = -I$(SUPERLU_DIR)/include
-   SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib64 -L$(SUPERLU_DIR)/lib64\
-      -lsuperlu_dist -lblas
-endif
+SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_5.1.0
+SUPERLU_OPT = -I$(SUPERLU_DIR)/SRC
+SUPERLU_LIB = -Wl,-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib -lsuperlu_dist_5.1.0

 # SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
 # STRUMPACK >= v2.2.0)
@@ -255,12 +222,12 @@ SCOTCH_OPT = -I$(SCOTCH_DIR)/include
 SCOTCH_LIB = -L$(SCOTCH_DIR)/lib -lptscotch -lptscotcherr -lscotch -lscotcherr\
 -lpthread

-# SCALAPACK library configuration (required by STRUMPACK and MUMPS)
+# SCALAPACK library configuration (required by STRUMPACK)
 SCALAPACK_DIR = @MFEM_DIR@/../scalapack-2.0.2
 SCALAPACK_OPT = -I$(SCALAPACK_DIR)/SRC
 SCALAPACK_LIB = -L$(SCALAPACK_DIR)/lib -lscalapack $(LAPACK_LIB)

-# MPI Fortran library, needed e.g. by STRUMPACK or MUMPS
+# MPI Fortran library, needed e.g. by STRUMPACK
 # MPICH:
 MPI_FORTRAN_LIB = -lmpifort
 # OpenMPI:
@@ -268,12 +235,6 @@ MPI_FORTRAN_LIB = -lmpifort
 # Additional Fortan library:
 # MPI_FORTRAN_LIB += -lgfortran

-# MUMPS library configuration
-MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.2.0
-MUMPS_OPT = -I$(MUMPS_DIR)/include
-MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
- -lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
-
 # STRUMPACK library configuration
 STRUMPACK_DIR = @MFEM_DIR@/../STRUMPACK-build
 STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
@@ -285,13 +246,7 @@ STRUMPACK_LIB = -L$(STRUMPACK_DIR)/lib -lstrumpack $(MPI_FORTRAN_LIB)\
 # Ginkgo library configuration (currently not needed)
 GINKGO_DIR = @MFEM_DIR@/../ginkgo/install
 GINKGO_OPT = -isystem $(GINKGO_DIR)/include
-GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_DIR)/lib -L$(GINKGO_DIR)/lib -lginkgo\
- -lginkgo_omp -lginkgo_cuda -lginkgo_reference
-
-# AmgX library configuration
-AMGX_DIR = @MFEM_DIR@/../amgx
-AMGX_OPT = -I$(AMGX_DIR)/include
-AMGX_LIB = -lcusparse -lcusolver -lcublas -lnvToolsExt -L$(AMGX_DIR)/lib -lamgx
+GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_DIR)/lib -L$(GINKGO_DIR)/lib -lginkgo -lginkgo_omp -lginkgo_cuda -lginkgo_reference

 # GnuTLS library configuration
 GNUTLS_OPT =
@@ -301,8 +256,8 @@ GNUTLS_LIB = -lgnutls
 NETCDF_DIR = $(HOME)/local
 HDF5_DIR   = $(HOME)/local
 NETCDF_OPT = -I$(NETCDF_DIR)/include -I$(HDF5_DIR)/include $(ZLIB_OPT)
-NETCDF_LIB = $(XLINKER)-rpath,$(NETCDF_DIR)/lib -L$(NETCDF_DIR)/lib\
- $(XLINKER)-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib\
+NETCDF_LIB = -Wl,-rpath,$(NETCDF_DIR)/lib -L$(NETCDF_DIR)/lib\
+ -Wl,-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib\
 -lnetcdf -lhdf5_hl -lhdf5 $(ZLIB_LIB)

 # PETSc library configuration (version greater or equal to 3.8 or the dev branch)
@@ -314,25 +269,9 @@ PETSC_INC_VAR = PETSC_CC_INCLUDES
 PETSC_LIB_VAR = PETSC_EXTERNAL_LIB_BASIC
 ifeq ($(PETSC_FOUND),YES)
   PETSC_OPT := $(shell sed -n "s/$(PETSC_INC_VAR) = *//p" $(PETSC_VARS))
-   PETSC_DEP := $(shell sed -n "s/$(PETSC_LIB_VAR) = *//p" $(PETSC_VARS))
-   PETSC_LIB = $(XLINKER)-rpath,$(abspath $(PETSC_DIR))/lib\
-      -L$(abspath $(PETSC_DIR))/lib -lpetsc\
-      $(subst $(CXX_XLINKER),$(XLINKER),$(PETSC_DEP))
-endif
-
-SLEPC_DIR := $(MFEM_DIR)/../slepc
-SLEPC_VARS := $(SLEPC_DIR)/lib/slepc/conf/slepc_variables
-SLEPC_FOUND := $(if $(wildcard $(SLEPC_VARS)),YES,)
-SLEPC_INC_VAR = SLEPC_INCLUDE
-SLEPC_LIB_VAR = SLEPC_EXTERNAL_LIB
-ifeq ($(SLEPC_FOUND),YES)
-   SLEPC_OPT := $(shell sed -n "s/$(SLEPC_INC_VAR) *= *//p" $(SLEPC_VARS))
-   # Some additional external libraries might be defined in this file
-   -include ${SLEPC_DIR}/${PETSC_ARCH}/lib/slepc/conf/slepcvariables
-   SLEPC_DEP := $(shell sed -n "s/$(SLEPC_LIB_VAR) *= *//p" $(SLEPC_VARS))
-   SLEPC_LIB = $(XLINKER)-rpath,$(abspath $(SLEPC_DIR))/$(PETSC_ARCH)/lib\
-      -L$(abspath $(SLEPC_DIR))/$(PETSC_ARCH)/lib -lslepc\
-      $(subst $(CXX_XLINKER),$(XLINKER),$(SLEPC_DEP))
+   PETSC_LIB := $(shell sed -n "s/$(PETSC_LIB_VAR) = *//p" $(PETSC_VARS))
+   PETSC_LIB := -Wl,-rpath,$(abspath $(PETSC_DIR))/lib\
+      -L$(abspath $(PETSC_DIR))/lib -lpetsc $(PETSC_LIB)
 endif

 # MPFR library configuration
@@ -343,7 +282,7 @@ MPFR_LIB = -lmpfr
 CONDUIT_DIR = @MFEM_DIR@/../conduit
 CONDUIT_OPT = -I$(CONDUIT_DIR)/include/conduit
 CONDUIT_LIB = \
-   $(XLINKER)-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
+   -Wl,-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
   -lconduit -lconduit_relay -lconduit_blueprint  -ldl

 # Check if Conduit was built with hdf5 support, by looking
@@ -351,7 +290,7 @@ CONDUIT_LIB = \
 CONDUIT_HDF5_HEADER=$(CONDUIT_DIR)/include/conduit/conduit_relay_hdf5.hpp
 ifneq (,$(wildcard $(CONDUIT_HDF5_HEADER)))
   CONDUIT_OPT += -I$(HDF5_DIR)/include
-   CONDUIT_LIB += $(XLINKER)-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
+   CONDUIT_LIB += -Wl,-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
                  -lhdf5 $(ZLIB_LIB)
 endif

@@ -361,9 +300,9 @@ SIDRE_DIR = @MFEM_DIR@/../axom
 SIDRE_OPT = -I$(SIDRE_DIR)/include -I$(CONDUIT_DIR)/include/conduit\
 -I$(HDF5_DIR)/include
 SIDRE_LIB = \
-   $(XLINKER)-rpath,$(SIDRE_DIR)/lib -L$(SIDRE_DIR)/lib \
-   $(XLINKER)-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
-   $(XLINKER)-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
+   -Wl,-rpath,$(SIDRE_DIR)/lib -L$(SIDRE_DIR)/lib \
+   -Wl,-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
+   -Wl,-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
   -laxom -lconduit -lconduit_relay -lconduit_blueprint -lhdf5 $(ZLIB_LIB) -ldl

 # PUMI
@@ -383,9 +322,9 @@ GSLIB_DIR = @MFEM_DIR@/../gslib/build
 GSLIB_OPT = -I$(GSLIB_DIR)/include
 GSLIB_LIB = -L$(GSLIB_DIR)/lib -lgs

-# CUDA library configuration
+# CUDA library configuration (currently not needed)
 CUDA_OPT =
-CUDA_LIB = -lcusparse
+CUDA_LIB =

 # HIP library configuration (currently not needed)
 HIP_OPT =
@@ -414,15 +353,6 @@ UMPIRE_DIR = @MFEM_DIR@/../umpire
 UMPIRE_OPT = -I$(UMPIRE_DIR)/include
 UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire

-# MKL CPardiso library configuration
-MKL_CPARDISO_DIR ?=
-MKL_MPI_WRAPPER ?= mkl_blacs_mpich_lp64
-MKL_LIBRARY_SUBDIR ?= lib
-MKL_CPARDISO_OPT = -I$(MKL_CPARDISO_DIR)/include
-MKL_CPARDISO_LIB = $(XLINKER)-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
-   -L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
-   -lmkl_intel_lp64 -lmkl_sequential -lmkl_core
-
 # If YES, enable some informational messages
 VERBOSE = NO

@@ -1,33 +0,0 @@
-// Copyright (c) 2010-2020, Lawrence Livermore National Security, LLC. Produced
-// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-// LICENSE and NOTICE for details. LLNL-CODE-806117.
-//
-// This file is part of the MFEM library. For more information and source code
-// availability visit https://mfem.org.
-//
-// MFEM is free software; you can redistribute it and/or modify it under the
-// terms of the BSD-3 license. We welcome feedback and contributions, see file
-// CONTRIBUTING.md for details.
-
-#include "dmumps_c.h"
-#include <string>
-#include <iostream>
-#include <algorithm>
-
-// Macros to expand a macro as a string
-#define STR_EXPAND(s) #s
-#define STR(s) STR_EXPAND(s)
-
-int main()
-{
-#ifdef MUMPS_VERSION
-   const char *ptr = STR(MUMPS_VERSION);
-   std::string s(ptr);
-   s.erase(std::remove(s.begin(), s.end(), '"'), s.end());
-   s.erase(std::remove(s.begin(), s.end(), '.'), s.end());
-   std::cout << s << "\n";
-   return 0;
-#else
-   return -1;
-#endif
-}
@@ -42,10 +42,6 @@ GHV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(HYPRE_OPT))
 SMX = $(if $(MFEM_USE_PUMI:NO=),MFEM_USE_SIMMETRIX)
 SMX_PATH = $(PUMI_DIR)/include/gmi_sim.h
 SMX_FILE = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(SMX_PATH))
-MUMPS = $(MFEM_USE_MUMPS:NO=)
-GMV_CXX ?= $(MFEM_CXX)
-GMV = get_mumps_version
-GMV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(MUMPS_OPT))

 $(GHV): $(SRC)$(GHV).cpp
 	$(call mfem-info, Determining HYPRE version ...)
@@ -54,13 +50,6 @@ $(GHV).out: $(GHV)
 	./$(GHV) > $(GHV).out
 .INTERMEDIATE: $(GHV) $(GHV).out

-$(GMV): $(SRC)$(GMV).cpp
-	$(call mfem-info, Determining MUMPS version ...)
-	$(GMV_CXX) ${GMV_FLAGS} $(SRC)$(GMV).cpp -o $(GMV)
-$(GMV).out: $(GMV)
-	./$(GMV) > $(GMV).out
-.INTERMEDIATE: $(GMV) $(GMV).out
-
 get-hypre-version: $(GHV).out
 	$(eval MFEM_HYPRE_VERSION:=$(shell cat $(GHV).out))
 	$(if $(MFEM_HYPRE_VERSION),$(eval export MFEM_HYPRE_VERSION)\
@@ -73,18 +62,10 @@ check-smx:
 	$(call mfem-info, MFEM_USE_SIMMETRIX = $(MFEM_USE_SIMMETRIX))
 	$(eval export MFEM_USE_SIMMETRIX)

-get-mumps-version: $(GMV).out
-	$(eval MFEM_MUMPS_VERSION:=$(shell cat $(GMV).out))
-	$(if $(MFEM_MUMPS_VERSION),$(eval export MFEM_MUMPS_VERSION)\
-	$(info MUMPS version: $(MFEM_MUMPS_VERSION)),\
-	$(error Unable to determine MUMPS version))
-
-header: $(if $(MPI),get-hypre-version,) $(if $(SMX),check-smx,) \
- $(if $(MUMPS),get-mumps-version,)
+header: $(if $(MPI),get-hypre-version,) $(if $(SMX),check-smx)
 	$(call mfem-info, Writing $(CONFIG_HPP) ...)
 	@set -- && \
-	for def in $${MFEM_DEFINES} $(if $(MPI),MFEM_HYPRE_VERSION) $(SMX) \
-	           $(if $(MUMPS),MFEM_MUMPS_VERSION); do \
+	for def in $${MFEM_DEFINES} $(if $(MPI),MFEM_HYPRE_VERSION) $(SMX); do \
 	   eval var=\$$$$def && \
 	   if [ "NO" != "$${var}" ]; then \
 	      set -- "$$@" -e "s|// \(#define $${def} \)|\1|" && \
@@ -47,11 +47,7 @@ groups_serial=(
   "Meshing miniapps:"
   "miniapps/meshing"
   "mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
-    mesh-optimizer.cpp minimal-surface.cpp"'
-'"convergence"
-   "Convergence tests:"
-   "tests/convergence"
-   "rates.cpp"'
+    mesh-optimizer.cpp"'
 )
 # Parallel groups
 groups_parallel=(
@@ -76,20 +72,12 @@ groups_parallel=(
 '"meshing"
   "Meshing miniapps:"
   "miniapps/meshing"
-   "pmesh-optimizer.cpp pminimal-surface.cpp"'
+   "pmesh-optimizer.cpp"'
 '"electromagnetics"
   "Electromagnetics miniapps:"
   "miniapps/electromagnetics"
   "joule.cpp"'
 #   "{volta,tesla,joule}.cpp"' # todo: multiline sample runs
-'"convergence"
-   "Convergence tests:"
-   "tests/convergence"
-   "prates.cpp"'
-'"par-mesh-format"
-   "Parallel mesh tests:"
-   "tests/par-mesh-format"
-   "ex1p.cpp"'
 )
 # All groups serial + parallel runs mixed in the same group:
 groups_all=(
@@ -113,20 +101,12 @@ groups_all=(
   "Meshing miniapps:"
   "miniapps/meshing"
   "mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
-    {,p}mesh-optimizer.cpp {,p}minimal-surface.cpp"'
+    {,p}mesh-optimizer.cpp"'
 '"electromagnetics"
   "Electromagnetics miniapps:"
   "miniapps/electromagnetics"
   "joule.cpp"'
 #   "{volta,tesla,joule}.cpp"' # todo: multiline sample runs
-'"convergence"
-   "Convergence tests:"
-   "tests/convergence"
-   "{,p}rates.cpp"'
-'"par-mesh-format"
-   "Parallel mesh tests:"
-   "tests/par-mesh-format"
-   "ex1p.cpp"'
 )
 make_all="all"
 base_timeformat=$'real: %3Rs  user: %3Us  sys: %3Ss  %%cpu: %P'
@@ -400,15 +380,10 @@ function timed_run()
 # This function is used to execute the sample runs
 function go()
 {
-   # Strip leading and trailing spaces from $1 and store the result in cmd_line
-   shopt -s extglob
-   local cmd_line="${1##+( )}"
-   cmd_line="${cmd_line%%+( )}"
-   shopt -u extglob
-   eval local cmd=(${cmd_line})
+   local cmd=("$@")
   local res=""
   echo $sep
-   echo "<${group}>" "${cmd_line}"
+   echo "<${group}>" "${cmd[@]}"
   echo $sep
   if [ "${timing}" == "yes" ]; then
      timed_run "${cmd[@]}"
@@ -420,15 +395,15 @@ function go()
   else
      res="${red}FAILED${none}"
   fi
-   printf "[${res}] <${group}> ${cmd_line}\n"
+   printf "[${res}] <${group}> ${cmd[*]}\n"
   if [ "${timing}" == "yes" ]; then
      printf "Run time: %s\n" "${timer}"
      timer=(${timer})
      timer="${timer[1]}"
-      printf -v line "[$res](%8s) ${cmd_line}" "$timer"
+      printf -v line "[$res](%8s) ${cmd[*]}" "$timer"
      summary=("${summary[@]}" "$line")
   else
-      summary=("${summary[@]}" "[${res}] ${cmd_line}")
+      summary=("${summary[@]}" "[${res}] ${cmd[*]}")
   fi
   echo $sep
 }
@@ -463,7 +438,7 @@ function go_group()
      fi
      for run in "${runs[@]}"; do
         if [ "${run}" == "" ]; then continue; fi
-         eval go \"\${run_prefix} \${run} \${run_suffix}\" $output
+         eval go \${run_prefix} \${run} \${run_suffix} $output
      done
   done
   ${make} clean-exec
@@ -529,7 +504,7 @@ function echo_run()
 {
   echo "   $@"
   { echo "   $@"; echo "$sep";
-     eval "$@"
+     "$@"
     echo "$sep"; } >> "$echo_log" 2>&1
 }

@@ -549,28 +524,6 @@ function build_all()
   echo_run ${make} config ${mfem_config} || exit 1
   echo_run ${make} ${make_j} || exit 1
   echo_run ${make} ${make_all} ${make_j} || exit 1
-   # Build groups in directories other than the directories built by 'make all':
-   for group_params in "${groups[@]}"; do
-      eval params=(${group_params})
-      group_dir="${params[2]}"
-      case "$group_dir" in
-         (examples*|miniapps*)
-            # Built by 'make all'
-            ;;
-         (*)
-            if [ "${mfem_dir}" != "${mfem_build_dir}" ]; then
-               echo_run mkdir -p "${group_dir}" || exit 1
-               echo_run cd "${group_dir}" || exit 1
-               echo_run cp -af "${mfem_dir}/${group_dir}/makefile" . || exit 1
-            else
-               echo_run cd "${group_dir}" || exit 1
-            fi
-            echo_run ${make} clean || exit 1
-            echo_run ${make} MFEM_DIR="${mfem_dir}" ${make_j} || exit 1
-            echo_run cd "${mfem_build_dir}" || exit 1
-            ;;
-      esac
-   done
 }

 # Function that runs all sample runs, given by the array variable "groups".
@@ -29,20 +29,8 @@
 #define MFEM_ALWAYS_INLINE
 #endif

-// --- MFEM_VECTORIZE_LOOP (disabled)
-#if (__cplusplus >= 201103L) && !defined(MFEM_DEBUG) && defined(__GNUC__)
-//#define MFEM_VECTORIZE_LOOP _Pragma("GCC ivdep")
-#define MFEM_VECTORIZE_LOOP
-#else
-#define MFEM_VECTORIZE_LOOP
-#endif
-
-// MFEM_TEMPLATE_BLOCK_SIZE is the block size used by the template matrix-matrix
-// multiply, Mult_AB, defined in tmatrix.hpp. This parameter will generally
-// require tuning to determine good value. It is probably highly influenced by
-// the SIMD width when Mult_AB is used with a SIMD type like AutoSIMD.
 #define MFEM_TEMPLATE_BLOCK_SIZE 4
-
+#define MFEM_SIMD_SIZE 32
 #define MFEM_TEMPLATE_ENABLE_SERIALIZE

 // #define MFEM_TEMPLATE_ELTRANS_HAS_NODE_DOFS
@@ -50,6 +38,11 @@
 // #define MFEM_TEMPLATE_FIELD_EVAL_DATA_HAS_DOFS
 #define MFEM_TEMPLATE_INTRULE_COEFF_PRECOMP

+// derived macros
+#define MFEM_ROUNDUP(val,base) ((((val)+(base)-1)/(base))*(base))
+#define MFEM_ALIGN_SIZE(size,type) \
+   MFEM_ROUNDUP(size,(MFEM_SIMD_SIZE)/sizeof(type))
+
 #ifdef MFEM_COUNT_FLOPS
 namespace mfem
 {
@@ -31,14 +31,14 @@ POINTS 27 double
 7 0.5 1
 8 0.5 1
 CELLS 8 56
-6 0 18 9 1 19 10
-6 1 19 10 2 20 11
-6 2 20 11 3 21 12
-6 3 21 12 4 22 13
-6 4 22 13 5 23 14
-6 5 23 14 6 24 15
-6 6 24 15 7 25 16
-6 7 25 16 8 26 17
+6 0 9 18 1 10 19
+6 1 10 19 2 11 20
+6 2 11 20 3 12 21
+6 3 12 21 4 13 22
+6 4 13 22 5 14 23
+6 5 14 23 6 15 24
+6 6 15 24 7 16 25
+6 7 16 25 8 17 26
 CELL_TYPES 8
 13
 13
@@ -1,86 +0,0 @@
-SetFactory("OpenCASCADE");
-
-// Select periodic mesh by setting this to either 0 - standard, 1 - periodic
-periodic = 1;
-
-// Set the geometry order (1, 2, ..., 9)
-order = 3;
-
-// Set the element type (3 - triangles, 4 - quadrilaterals)
-type = 3;
-
-// Number of radial elements
-nrad = 2;
-
-// Number of azimuthal elements on inner arc
-nazm1 = 3;
-
-// Number of azimuthal elements on outer arc
-nazm2 = 5;
-
-// Note: Using type = 4 with nazm1 != nazm2 can lead to mixed meshes
-//       containing both triangles and quadrilaterals.
-
-// Inner and outer radii
-R1 = 1.0;
-R2 = 2.0;
-
-// Angular size of the sector
-Phi = Pi/3.0;
-
-Point(1) = {0.0, 0, 0, 1.0};
-Point(2) = {R1, 0, 0, 1.0};
-Point(3) = {R2, 0, 0, 1.0};
-Point(4) = {R1*Cos(Phi), R1*Sin(Phi), 0, 1.0};
-Point(5) = {R2*Cos(Phi), R2*Sin(Phi), 0, 1.0};
-Line(1) = {2, 3};
-Line(2) = {4, 5};
-Circle(3) = {2, 1, 4};
-Circle(4) = {3, 1, 5};
-Curve Loop(5) = {1, 4, -2, -3};
-Plane Surface(1) = {5};
-
-Transfinite Curve{1} = nrad+1;
-Transfinite Curve{2} = nrad+1;
-Transfinite Curve{3} = nazm1+1;
-Transfinite Curve{4} = nazm2+1;
-
-If (nazm1 == nazm2)
-   Transfinite Surface{1};
-EndIf
-
-If (type == 4)
-   Recombine Surface {1};
-EndIf
-
-// Set a rotation periodicity constraint:
-If (periodic)
-   Periodic Line{1} = {2} Rotate{{0,0,1}, {0,0,0}, -Phi};
-EndIf
-
-// Tag surfaces and volumes with positive integers
-Physical Curve(1) = {3};
-Physical Curve(2) = {4};
-Physical Curve(3) = {1};
-Physical Curve(4) = {2};
-Physical Surface(1) = {1};
-
-// Optimize the high-order mesh
-// See https://gmsh.info/doc/texinfo/gmsh.html#index-Mesh_002eHighOrderOptimize
-// Mesh.ElementOrder = order;
-// Mesh.HighOrderOptimize = 1;
-
-// Generate 2D mesh
-Mesh 2;
-SetOrder order;
-Mesh.MshFileVersion = 2.2;
-
-// Check the element quality (the Plugin may be called AnalyseCurvedMesh)
-// Plugin(AnalyseMeshQuality).JacobianDeterminant = 1;
-// Plugin(AnalyseMeshQuality).Run;
-
-If (periodic)
-   Save Sprintf("periodic-annulus-sector-t%01g-o%01g.msh", type, order);
-Else
-   Save Sprintf("annulus-sector-t%01g-o%01g.msh", type, order);
-EndIf
@@ -1,192 +0,0 @@
-$MeshFormat
-2.2 0 8
-$EndMeshFormat
-$Nodes
-136
-1 1 0 0
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-125 1.500184666513678 0.1831433492101474 0
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-127 0.9498053499729417 0.7597194708525821 0
-128 1.132839036494479 0.4426958263006443 0
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-130 1.243841486887416 1.443696659267553 0
-131 1.134903597606542 1.530869109405537 0
-132 1.872198725728137 0.3553499962917315 0
-133 1.788102249988661 0.2948766109479449 0
-134 1.893223337417325 0.2174207916708467 0
-135 1.213959700272622 1.308110604053232 0
-136 1.739836864206217 0.3972646375800152 0
-$EndNodes
-$Elements
-38
-1 26 2 3 1 1 5 6 7
-2 26 2 3 1 5 2 8 9
-3 26 2 4 2 3 10 11 12
-4 26 2 4 2 10 4 13 14
-5 26 2 1 3 1 15 17 18
-6 26 2 1 3 15 16 19 20
-7 26 2 1 3 16 3 21 22
-8 26 2 2 4 2 23 27 28
-9 26 2 2 4 23 24 29 30
-10 26 2 2 4 24 25 31 32
-11 26 2 2 4 25 26 33 34
-12 26 2 2 4 26 4 35 36
-13 21 2 1 1 3 41 10 45 46 47 48 12 11 49
-14 21 2 1 1 5 42 1 50 51 52 53 6 7 54
-15 21 2 1 1 16 41 3 55 56 46 45 22 21 57
-16 21 2 1 1 1 42 15 53 52 58 59 18 17 60
-17 21 2 1 1 37 40 38 61 62 63 64 65 66 67
-18 21 2 1 1 39 40 37 68 69 62 61 70 71 72
-19 21 2 1 1 38 41 37 73 74 75 76 66 65 77
-20 21 2 1 1 37 42 39 78 79 80 81 71 70 82
-21 21 2 1 1 24 39 23 83 84 85 86 29 30 87
-22 21 2 1 1 26 38 25 88 89 90 91 33 34 92
-23 21 2 1 1 15 37 16 93 94 95 96 20 19 97
-24 21 2 1 1 42 44 39 98 99 100 101 81 80 102
-25 21 2 1 1 38 43 41 103 104 105 106 74 73 107
-26 21 2 1 1 2 44 5 108 109 110 111 8 9 112
-27 21 2 1 1 10 43 4 113 114 115 116 14 13 117
-28 21 2 1 1 24 40 39 118 119 69 68 84 83 120
-29 21 2 1 1 38 40 25 64 63 121 122 91 90 123
-30 21 2 1 1 41 43 10 106 105 114 113 48 47 124
-31 21 2 1 1 5 44 42 111 110 99 98 51 50 125
-32 21 2 1 1 25 40 24 122 121 119 118 31 32 126
-33 21 2 1 1 37 41 16 76 75 56 55 96 95 127
-34 21 2 1 1 15 42 37 59 58 79 78 94 93 128
-35 21 2 1 1 4 43 26 116 115 129 130 35 36 131
-36 21 2 1 1 23 44 2 132 133 109 108 27 28 134
-37 21 2 1 1 26 43 38 130 129 104 103 89 88 135
-38 21 2 1 1 39 44 23 101 100 133 132 86 85 136
-$EndElements
-$Periodic
-1
-1 1 2
-Affine 0.5000000000000001 0.8660254037844386 0 0 -0.8660254037844386 0.5000000000000001 0 0 0 0 1 0 0 0 0 1
-3
-5 10
-1 3
-2 4
-$EndPeriodic
@@ -1,141 +0,0 @@
-// Select periodic mesh by setting this to either 0 - standard, 1 - periodic
-periodic = 1;
-
-// Set the geometry order (1, 2, ..., 10 for tetrahedra or 9 for other types)
-order = 3;
-
-// Set the element type (4 - tetrahedra, 6 - wedges, 8 - hexahedra)
-type = 8;
-
-// Minor and major radii
-R1 = 1.0;
-R2 = 2.0;
-
-// Side length of interior square
-A1 = 0.8;
-
-// Angular size of the sector
-Phi = Pi/3.0;
-
-// Number of azimuthal elements
-nazm = 3;
-
-// Number of elements around a quarter of the circle
-narc = 2;
-
-// Number of elements between surface and interior square
-nshl = 1;
-
-lc = 0.5;
-a1 = A1 / Sqrt(2.0);
-
-Point(1) = {R2+R1, 0, 0, lc};
-Point(2) = {R2, 0, R1, lc};
-Point(3) = {R2-R1, 0, 0, lc};
-Point(4) = {R2, 0, -R1, lc};
-Point(5) = {R2, 0, 0, lc};
-Point(6) = {R2+a1, 0, 0, lc};
-Point(7) = {R2, 0, a1, lc};
-Point(8) = {R2-a1, 0, 0, lc};
-Point(9) = {R2, 0, -a1, lc};
-
-Circle(1) = {1,5,2};
-Circle(2) = {2,5,3};
-Circle(3) = {3,5,4};
-Circle(4) = {4,5,1};
-
-Line(5) = {6,1};
-Line(6) = {7,2};
-Line(7) = {8,3};
-Line(8) = {9,4};
-
-Line(9) = {6, 7};
-Line(10) = {7, 8};
-Line(11) = {8, 9};
-Line(12) = {9, 6};
-
-Line Loop(101) = {1, -6, -9, 5};
-Line Loop(102) = {2, -7, -10, 6};
-Line Loop(103) = {3, -8, -11, 7};
-Line Loop(104) = {4, -5, -12, 8};
-Line Loop(105) = {9, 10, 11, 12};
-
-Plane Surface(201) = {101};
-Plane Surface(202) = {102};
-Plane Surface(203) = {103};
-Plane Surface(204) = {104};
-Plane Surface(205) = {105};
-
-Transfinite Curve{1} = narc+1;
-Transfinite Curve{2} = narc+1;
-Transfinite Curve{3} = narc+1;
-Transfinite Curve{4} = narc+1;
-
-Transfinite Curve{5} = nshl+1;
-Transfinite Curve{6} = nshl+1;
-Transfinite Curve{7} = nshl+1;
-Transfinite Curve{8} = nshl+1;
-
-Transfinite Curve{9} = narc+1;
-Transfinite Curve{10} = narc+1;
-Transfinite Curve{11} = narc+1;
-Transfinite Curve{12} = narc+1;
-
-If (type == 8)
-   Recombine Surface {201};
-   Recombine Surface {202};
-   Recombine Surface {203};
-   Recombine Surface {204};
-   Recombine Surface {205};
-
-   Transfinite Surface {201} = {1,2,7,6};
-   Transfinite Surface {202} = {2,3,8,7};
-   Transfinite Surface {203} = {3,4,9,8};
-   Transfinite Surface {204} = {4,1,6,9};
-   Transfinite Surface {205} = {6,7,8,9};
-EndIf
-
-If (type == 4)
-   Extrude { {0,0,1} , {0,0,0} , Phi} {
-      Surface{201,202,203,204,205}; Layers{nazm};
-}
-Else
-   Extrude { {0,0,1} , {0,0,0} , Phi} {
-      Surface{201,202,203,204,205}; Layers{nazm}; Recombine;
-}
-EndIf
-
-// Set a rotation periodicity constraint:
-If (periodic)
-   Periodic Surface{227} = {201} Rotate{{0,0,1}, {0,0,0}, Phi};
-   Periodic Surface{249} = {202} Rotate{{0,0,1}, {0,0,0}, Phi};
-   Periodic Surface{271} = {203} Rotate{{0,0,1}, {0,0,0}, Phi};
-   Periodic Surface{293} = {204} Rotate{{0,0,1}, {0,0,0}, Phi};
-   Periodic Surface{315} = {205} Rotate{{0,0,1}, {0,0,0}, Phi};
-EndIf
-
-// Tag surfaces and volumes with positive integers
-Physical Surface(1) = {201,202,203,204,205};
-Physical Surface(2) = {227,249,271,293,315};
-Physical Surface(3) = {214,236,258,280};
-Physical Volume(1) = {1,2,3,4,5};
-
-// Optimize the high-order mesh
-// See https://gmsh.info/doc/texinfo/gmsh.html#index-Mesh_002eHighOrderOptimize
-// Mesh.ElementOrder = order;
-// Mesh.HighOrderOptimize = 1;
-
-// Generate 3D mesh
-Mesh 3;
-SetOrder order;
-Mesh.MshFileVersion = 2.2;
-
-// Check the element quality (the Plugin may be called AnalyseCurvedMesh)
-// Plugin(AnalyseMeshQuality).JacobianDeterminant = 1;
-// Plugin(AnalyseMeshQuality).Run;
-
-If (periodic)
-   Save Sprintf("periodic-torus-sector-t%01g-o%01g.msh", type, order);
-Else
-   Save Sprintf("torus-sector-t%01g-o%01g.msh", type, order);
-EndIf
@@ -1,155 +0,0 @@
-MFEM NURBS mesh v1.0
-
-dimension
-2
-
-elements
-5
-1 3 0 3 7 4
-1 3 3 2 6 7
-1 3 2 1 5 6
-1 3 1 0 4 5
-1 3 2 8 9 1
-
-boundary
-10
-1 1 0 3
-2 1 3 2
-2 1 1 0
-2 1 2 8
-2 1 9 1
-3 1 7 4
-3 1 6 7
-3 1 5 6
-3 1 4 5
-4 1 8 9
-
-edges
-15
-0 0 4
-0 3 7
-0 1 5
-0 2 6
-1 0 3
-1 4 7
-2 3 2
-2 7 6
-2 1 0
-2 5 4
-1 2 1
-1 6 5
-1 8 9
-3 2 8
-3 1 9
-
-vertices
-10
-
-patches
-
-knotvectors
-2
-2 3 0 0 0 1 1 1
-2 4 0 0 0 0.5 1 1 1
-
-dimension
-2
-
-controlpoints_cartesian
-5 5 1
-5 3.92523e-16 1
-5 -5 1
-2.47593 2.47593 1
-4.95187 6.06429e-16 0.707107
-2.47593 -2.47593 1
-0.424264 0.424264 1
-0.848528 1.03915e-16 0.707107
-0.424264 -0.424264 1
-0.353553 0.353553 1
-0.707107 8.65956e-17 0.707107
-0.353553 -0.353553 1
-
-knotvectors
-2
-2 3 0 0 0 1 1 1
-2 4 0 0 0 0.5 1 1 1
-
-dimension
-2
-
-controlpoints_cartesian
-5 -5 1
-1.17757e-15 -5 1
-5 -5 1
-2.47593 -2.47593 1
-9.09644e-16 -4.95187 0.707107
-2.47593 -2.47593 1
-0.424264 -0.424264 1
-1.55872e-16 -0.848528 0.707107
-0.424264 -0.424264 1
-0.353553 -0.353553 1
-1.29893e-16 -0.707107 0.707107
-0.353553 -0.353553 1
-
-knotvectors
-2
-2 3 0 0 0 1 1 1
-2 4 0 0 0 0.5 1 1 1
-
-dimension
-2
-
-controlpoints_cartesian
-5 -5 1
-5 -1.17757e-15 1
-5 5 1
-2.47593 -2.47593 1
-4.95187 -1.21286e-15 0.707107
-2.47593 2.47593 1
-0.424264 -0.424264 1
-0.848528 -2.07829e-16 0.707107
-0.424264 0.424264 1
-0.353553 -0.353553 1
-0.707107 -1.73191e-16 0.707107
-0.353553 0.353553 1
-
-knotvectors
-2
-2 3 0 0 0 1 1 1
-2 4 0 0 0 0.5 1 1 1
-
-dimension
-2
-
-controlpoints_cartesian
-5 5 1
-3.92523e-16 5 1
-5 5 1
-2.47593 2.47593 1
-3.03215e-16 4.95187 0.707107
-2.47593 2.47593 1
-0.424264 0.424264 1
-5.19574e-17 0.848528 0.707107
-0.424264 0.424264 1
-0.353553 0.353553 1
-4.32978e-17 0.707107 0.707107
-0.353553 0.353553 1
-
-knotvectors
-2
-2 3 0 0 0 1 1 1
-2 3 0 0 0 1 1 1
-
-dimension
-2
-
-controlpoints_cartesian
-5 -5 1
-10 -5 1
-15 -5 1
-5 0 1
-10 0 1
-15 0 1
-5 5 1
-10 5 1
-15 5 1
@@ -1,118 +0,0 @@
-MFEM mesh v1.0
-
-#
-# MFEM Geometry Types (see mesh/geom.hpp):
-#
-# POINT       = 0
-# SEGMENT     = 1
-# TRIANGLE    = 2
-# SQUARE      = 3
-# TETRAHEDRON = 4
-# CUBE        = 5
-# PRISM       = 6
-#
-
-dimension
-2
-
-elements
-20
-1 3 0 1 6 5
-1 3 1 2 7 6
-1 3 2 3 8 7
-1 3 3 4 9 8
-1 3 5 6 11 10
-1 2 6 7 11
-1 2 7 12 11
-1 2 7 8 13
-1 2 7 13 12
-1 3 8 9 14 13
-1 3 10 11 16 15
-1 2 11 12 17
-1 2 11 17 16
-1 2 12 13 17
-1 2 13 18 17
-1 3 13 14 19 18
-1 3 15 16 21 20
-1 3 16 17 22 21
-1 3 17 18 23 22
-1 3 18 19 24 23
-
-boundary
-16
-2 1 0 1
-2 1 1 2
-2 1 2 3
-2 1 3 4
-2 1 21 20
-2 1 22 21
-2 1 23 22
-2 1 24 23
-1 1 5 0
-1 1 10 5
-1 1 15 10
-1 1 20 15
-1 1 4 9
-1 1 9 14
-1 1 14 19
-1 1 19 24
-
-vertices
-25
-
-nodes
-FiniteElementSpace
-FiniteElementCollection: H1_2D_P1
-VDim: 2
-Ordering: 0
-
-0
-0.25
-0.5
-0.75
-1
-0
-0.25
-0.5
-0.75
-1
-0
-0.25
-0.5
-0.75
-1
-0
-0.25
-0.5
-0.75
-1
-0
-0.25
-0.5
-0.75
-1
-0
-0
-0
-0
-0
-0.25
-0.25
-0.25
-0.25
-0.25
-0.5
-0.5
-0.5
-0.5
-0.5
-0.75
-0.75
-0.75
-0.75
-0.75
-1
-1
-1
-1
-1
@@ -16,19 +16,36 @@ if (DOXYGEN_FOUND)
  configure_file(${CMAKE_CURRENT_SOURCE_DIR}/CodeDocumentation.conf.in
    ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation.conf @ONLY)

-  add_custom_target(doc
-    COMMAND ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation.conf
-    COMMAND echo "<meta http-equiv=\"REFRESH\" content=\"0;URL=CodeDocumentation/html/index.html\">" > ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation.html
-    BYPRODUCTS ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation/html/index.html
-    WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
-    COMMENT "Generating API documentation with Doxygen to CodeDocumentation.html"
-    VERBATIM)
+  if (UNIX)
+    # Only create symlinks if UNIX operating system
+    add_custom_target(doc
+      COMMAND ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation.conf
+      COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation.html
+      COMMAND ${CMAKE_COMMAND} -E create_symlink
+      ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation/html/index.html
+      ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation.html
+      BYPRODUCTS ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation/html/index.html
+      WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
+      COMMENT "Generating API documentation with Doxygen to CodeDocumentation.html"
+      VERBATIM)

-  add_custom_target(clean-doc
-    COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation.html
-    COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_CURRENT_BINARY_DIR}/warnings.log
-    COMMAND ${CMAKE_COMMAND} -E remove_directory ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation
-    COMMENT "Removing API documentation"
-    VERBATIM)
+    add_custom_target(clean-doc
+      COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation.html
+      COMMAND ${CMAKE_COMMAND} -E remove_directory ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation
+      COMMENT "Removing API documentation"
+      VERBATIM)

+  else (UNIX)
+    add_custom_target(doc
+      COMMAND ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation.conf
+      BYPRODUCTS ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation/html/index.html
+      WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
+      COMMENT "Generating API documentation with Doxygen to CodeDocumentation/html/index.html"
+      VERBATIM)
+
+    add_custom_target(clean-doc
+      COMMAND ${CMAKE_COMMAND} -E remove_directory ${CMAKE_CURRENT_BINARY_DIR}/CodeDocumentation
+      COMMENT "Removing API documentation"
+      VERBATIM)
+  endif (UNIX)
 endif (DOXYGEN_FOUND)
@@ -38,7 +38,7 @@ PROJECT_NAME           = "MFEM"
 # could be handy for archiving the generated documentation or if some version
 # control system is used.

-PROJECT_NUMBER         = v4.2.1
+PROJECT_NUMBER         = v4.1.1

 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a
@@ -51,7 +51,7 @@ PROJECT_BRIEF          = "Finite element discretization library"
 # pixels and the maximum width should not exceed 200 pixels. Doxygen will copy
 # the logo to the output directory.

-PROJECT_LOGO           = logo-small.png
+PROJECT_LOGO           =

 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path
 # into which the generated documentation will be written. If a relative path is
@@ -746,7 +746,7 @@ WARN_FORMAT            = "$file:$line: $text"
 # messages should be written. If left blank the output is written to standard
 # error (stderr).

-WARN_LOGFILE           = warnings.log
+WARN_LOGFILE           =

 #---------------------------------------------------------------------------
 # Configuration options related to the input files
@@ -766,19 +766,14 @@ INPUT                  = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
                         @MFEM_SOURCE_DIR@/mesh \
                         @MFEM_SOURCE_DIR@/fem \
                         @MFEM_SOURCE_DIR@/examples \
-                         @MFEM_SOURCE_DIR@/examples/amgx \
-                         @MFEM_SOURCE_DIR@/examples/ginkgo \
-                         @MFEM_SOURCE_DIR@/examples/hiop \
                         @MFEM_SOURCE_DIR@/examples/petsc \
                         @MFEM_SOURCE_DIR@/examples/pumi \
+                         @MFEM_SOURCE_DIR@/examples/hiop \
                         @MFEM_SOURCE_DIR@/examples/sundials \
-                         @MFEM_SOURCE_DIR@/examples/superlu \
-                         @MFEM_SOURCE_DIR@/miniapps/adjoint \
                         @MFEM_SOURCE_DIR@/miniapps/common \
                         @MFEM_SOURCE_DIR@/miniapps/electromagnetics \
                         @MFEM_SOURCE_DIR@/miniapps/gslib \
                         @MFEM_SOURCE_DIR@/miniapps/meshing \
-                         @MFEM_SOURCE_DIR@/miniapps/navier \
                         @MFEM_SOURCE_DIR@/miniapps/nurbs \
                         @MFEM_SOURCE_DIR@/miniapps/performance \
                         @MFEM_SOURCE_DIR@/miniapps/tools \
@@ -819,9 +814,7 @@ RECURSIVE              = NO
 # run.

 EXCLUDE                = @MFEM_SOURCE_DIR@/config/_config.hpp \
-                         @MFEM_SOURCE_DIR@/config/get_hypre_version.cpp \
-                         @MFEM_SOURCE_DIR@/general/tinyxml2.h \
-                         @MFEM_SOURCE_DIR@/general/tinyxml2.cpp
+                         @MFEM_SOURCE_DIR@/config/get_hypre_version.cpp

 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # directories that are symbolic links (a Unix file system feature) are excluded
@@ -1476,7 +1469,7 @@ MATHJAX_FORMAT         = HTML-CSS
 # The default value is: http://cdn.mathjax.org/mathjax/latest.
 # This tag requires that the tag USE_MATHJAX is set to YES.

-MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
+MATHJAX_RELPATH        = https://cdn.llnl.gov/mathjax/2.7.2

 # The MATHJAX_EXTENSIONS tag can be used to specify one or more MathJax
 # extension names that should be enabled during MathJax rendering. For example
@@ -2339,7 +2332,7 @@ PLANTUML_INCLUDE_PATH  =
 # Minimum value: 0, maximum value: 10000, default value: 50.
 # This tag requires that the tag HAVE_DOT is set to YES.

-DOT_GRAPH_MAX_NODES    = 50
+DOT_GRAPH_MAX_NODES    = 10

 # The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the graphs
 # generated by dot. A depth value of 3 means that only nodes reachable from the
@@ -62,7 +62,7 @@ namespace mfem {
 * - <a class="el" href="ex9p_8cpp_source.html">Example 9p</a>: parallel Discontinuous Galerkin (DG) time-dependent advection
 * - <a class="el" href="ex10_8cpp_source.html">Example 10</a>: time-dependent implicit nonlinear elasticity
 * - <a class="el" href="ex10p_8cpp_source.html">Example 10p</a>: parallel time-dependent implicit nonlinear elasticity
- * - <a class="el" href="ex11p_8cpp_source.html">Example 11p</a>: parallel Laplace eigensolver
+ * - <a class="el" href="examples_2ex11p_8cpp_source.html">Example 11p</a>: parallel Laplace eigensolver
 * - <a class="el" href="ex12p_8cpp_source.html">Example 12p</a>: parallel linear elasticity eigensolver
 * - <a class="el" href="ex13p_8cpp_source.html">Example 13p</a>: parallel Maxwell eigensolver
 * - <a class="el" href="ex14_8cpp_source.html">Example 14</a>: Discontinuous Galerkin (DG) for the Laplace problem
@@ -88,27 +88,17 @@ namespace mfem {
 * - <a class="el" href="ex24p_8cpp_source.html">Example 24p</a>: parallel mixed finite element spaces and interpolators
 * - <a class="el" href="ex25_8cpp_source.html">Example 25</a>: simulation of electromagnetic wave propagation using a Perfectly Matched Layer (PML)
 * - <a class="el" href="ex25p_8cpp_source.html">Example 25p</a>: parallel simulation of electromagnetic wave propagation using a Perfectly Matched Layer (PML)
- * - <a class="el" href="ex26_8cpp_source.html">Example 26</a>: multigrid preconditioner for the Laplace problem using nodal H1 FEM
- * - <a class="el" href="ex26p_8cpp_source.html">Example 26p</a>: parallel multigrid preconditioner for the Laplace problem using nodal H1 FEM
- * - <a class="el" href="ex27_8cpp_source.html">Example 27</a>: boundary conditions for the Laplace problem
- * - <a class="el" href="ex27p_8cpp_source.html">Example 27p</a>: parallel boundary conditions for the Laplace problem
 *
- * <H4>AmgX Examples</H4>
+ * <H4>SUNDIALS Examples</H4>
 * - Variants of Examples
- *   <a class="el" href="examples_2amgx_2ex1_8cpp_source.html">1</a> and
- *   <a class="el" href="examples_2amgx_2ex1p_8cpp_source.html">1p</a>,
- *   demonstrating the use of MFEM's \link amgxsolver.hpp AmgX integration\endlink.
- *
- * <H4>Ginkgo Examples</H4>
- * - Variants of Example
- *   <a class="el" href="examples_2ginkgo_2ex1_8cpp_source.html">1</a>,
- *   demonstrating the use of MFEM's \link ginkgo.hpp Ginkgo integration\endlink.
- *
- * <H4>HiOp Examples</H4>
- * - Variants of Examples
- *   <a class="el" href="hiop_2ex9_8cpp_source.html">9</a> and
- *   <a class="el" href="hiop_2ex9p_8cpp_source.html">9p</a>,
- *   demonstrating the use of MFEM's \link hiop.hpp HiOp integration\endlink.
+ *   <a class="el" href="sundials_2ex9_8cpp_source.html">9</a>,
+ *   <a class="el" href="sundials_2ex9p_8cpp_source.html">9p</a>,
+ *   <a class="el" href="sundials_2ex10_8cpp_source.html">10</a>,
+ *   <a class="el" href="sundials_2ex10p_8cpp_source.html">10p</a>,
+ *   <a class="el" href="sundials_2ex16_8cpp_source.html">16</a>,
+ *   and
+ *   <a class="el" href="sundials_2ex16p_8cpp_source.html">16p</a>
+ *   demonstrating the use of MFEM's \link sundials.hpp SUNDIALS classes\endlink
 *
 * <H4>PETSc Examples</H4>
 * - Variants of Examples
@@ -120,8 +110,8 @@ namespace mfem {
 *   <a class="el" href="petsc_2ex6p_8cpp_source.html">6p</a>,
 *   <a class="el" href="petsc_2ex9p_8cpp_source.html">9p</a>,
 *   and
- *   <a class="el" href="petsc_2ex10p_8cpp_source.html">10p</a>,
- *   demonstrating the use of MFEM's \link petsc.hpp PETSc integration\endlink.
+ *   <a class="el" href="petsc_2ex10p_8cpp_source.html">10p</a>
+ *   demonstrating the use of MFEM's \link petsc.hpp PETSc classes\endlink
 *
 * <H4>PUMI Examples</H4>
 * - Variants of Examples
@@ -129,45 +119,33 @@ namespace mfem {
 *   <a class="el" href="examples_2pumi_2ex1p_8cpp_source.html">1p</a>,
 *   <a class="el" href="pumi_2ex2_8cpp_source.html">2</a>,
 *   and
- *   <a class="el" href="pumi_2ex6p_8cpp_source.html">6p</a>,
- *   demonstrating the use of MFEM's \link pumi.hpp PUMI integration\endlink.
+ *   <a class="el" href="pumi_2ex6p_8cpp_source.html">6p</a>
+ *   demonstrating the use of MFEM's \link pumi.hpp PUMI classes\endlink
 *
- * <H4>SUNDIALS Examples</H4>
+ * <H4>HiOp Examples</H4>
 * - Variants of Examples
- *   <a class="el" href="sundials_2ex9_8cpp_source.html">9</a>,
- *   <a class="el" href="sundials_2ex9p_8cpp_source.html">9p</a>,
- *   <a class="el" href="sundials_2ex10_8cpp_source.html">10</a>,
- *   <a class="el" href="sundials_2ex10p_8cpp_source.html">10p</a>,
- *   <a class="el" href="sundials_2ex16_8cpp_source.html">16</a>,
- *   and
- *   <a class="el" href="sundials_2ex16p_8cpp_source.html">16p</a>,
- *   demonstrating the use of MFEM's \link sundials.hpp SUNDIALS integration\endlink.
- * - CVODES adjoint miniapps:
- *   <a class="el" href="cvsRoberts__ASAi__dns_8cpp_source.html">serial ODE system</a>,
- *   <a class="el" href="adjoint__advection__diffusion_8cpp_source.html">parallel advection-diffusion</a>.
+ *   <a class="el" href="hiop_2ex9_8cpp_source.html">9</a> and
+ *   <a class="el" href="hiop_2ex9p_8cpp_source.html">9p</a>,
+ *   demonstrating the use of MFEM's \link hiop.hpp HiOp classes\endlink
 *
- * <H4>SuperLU Examples</H4>
+ * <H4>Ginkgo Examples</H4>
 * - Variants of Example
- *   <a class="el" href="examples_2superlu_2ex1p_8cpp_source.html">1p</a>,
- *   demonstrating the use of MFEM's \link superlu.hpp SuperLU integration\endlink.
+ *   <a class="el" href="ginkgo_2ex1_8cpp_source.html">1</a>
+ *   demonstrating the use of MFEM's \link ginkgo.hpp Ginkgo classes\endlink
 *
 * <H3>Miniapps</H3>
 * - <a class="el" href="volta_8cpp_source.html">Volta</a>: simple electrostatics simulation code
 * - <a class="el" href="tesla_8cpp_source.html">Tesla</a>: simple magnetostatics simulation code
 * - <a class="el" href="maxwell_8cpp_source.html">Maxwell</a>: simple transient full-wave electromagnetics simulation code
 * - <a class="el" href="joule_8cpp_source.html">Joule</a>: transient magnetics and Joule heating miniapp
- * - <a class="el" href="classmfem_1_1navier_1_1NavierSolver.html">Navier</a>: solve the transient incompressible Navier-Stokes equations
 * - <a class="el" href="mobius-strip_8cpp_source.html">Mobius Strip</a>: generate various Mobius strip-like meshes
 * - <a class="el" href="klein-bottle_8cpp_source.html">Klein Bottle</a>: generate three types of Klein bottle surfaces
 * - <a class="el" href="toroid_8cpp_source.html">Toroid</a>: generate simple toroidal meshes
 * - <a class="el" href="twist_8cpp_source.html">Twist</a>: generate simple periodic meshes
- * - <a class="el" href="minimal-surface_8cpp_source.html">Minimal Surface</a>: compute minimal surfaces, <a class="el" href="minimal-surface_8cpp_source.html">serial</a> and <a class="el" href="pminimal-surface_8cpp_source.html">parallel</a> versions
- * - <a class="el" href="polar-nc_8cpp_source.html">Polar NC</a>: generate polar non-conforming meshes
 * - <a class="el" href="shaper_8cpp_source.html">Shaper</a>: resolve material interfaces by mesh refinement
 * - <a class="el" href="extruder_8cpp_source.html">Extruder</a>: extrude a low-dimensional mesh into a higher dimension
 * - <a class="el" href="mesh-explorer_8cpp_source.html">Mesh Explorer</a>: visualize and manipulate meshes
 * - <a class="el" href="mesh-optimizer_8cpp_source.html">Mesh Optimizer</a>: optimize high-order meshes, <a class="el" href="mesh-optimizer_8cpp_source.html">serial</a> and <a class="el" href="pmesh-optimizer_8cpp_source.html">parallel</a> versions
- * - <a class="el" href="trimmer_8cpp_source.html">Trimmer</a>: trim elements from existing meshes
 * - <a class="el" href="display-basis_8cpp_source.html">Display Basis</a>: visualize finite element basis functions
 * - <a class="el" href="get-values_8cpp_source.html">Get Values</a>: extract field values via DataCollection classes
 * - <a class="el" href="load-dc_8cpp_source.html">Load DC</a>: visualize fields saved via DataCollection classes
@@ -175,11 +153,10 @@ namespace mfem {
 * - <a class="el" href="lor-transfer_8cpp_source.html">LOR Transfer</a>: map functions between high-order and low-order refined spaces
 * - <a class="el" href="findpts_8cpp_source.html">Find Points</a>: evaluate grid function in physical space, <a class="el" href="findpts_8cpp_source.html">serial</a> and <a class="el" href="pfindpts_8cpp_source.html">parallel</a> versions
 * - <a class="el" href="field-diff_8cpp_source.html">Field Diff</a>: compare grid functions on different meshes
- * - <a class="el" href="field-interp_8cpp_source.html">Field Interp</a>: transfer a grid functions between meshes
 * - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
 * - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Laplace problem
 *
- * See also the <a class="el" href="https://mfem.org/examples/">examples documentation</a> online.
+ * See also the <a class="el" href="../../../examples/README.html">README</a> in the <code>examples/</code> directory
 */

 }
@@ -5,7 +5,7 @@
                      | | | | | ||  _||  __/| | | | | |
                      |_| |_| |_||_|   \___||_| |_| |_|

-                               https://mfem.org
+                               http://mfem.org

 This directory contains Doxygen configuration files for building HTML
 documentation of the MFEM sources (including the example codes and miniapps).
@@ -21,7 +21,7 @@ create the file CodeDocumentation.html, which can be viewed in any web browser.

 Alternatively, the (pre-build) documentation can be browsed directly online at

-   https://mfem.github.io/doxygen/html/index.html
+   http://mfem.github.io/doxygen/html/index.html


 Some building considerations:
@@ -9,24 +9,18 @@
 # terms of the BSD-3 license. We welcome feedback and contributions, see file
 # CONTRIBUTING.md for details.

-SHELL = /bin/bash
 MFEM_DIR ?= ..
 DOXYGEN_CONF = CodeDocumentation.conf

 # doxygen uses: graphviz, latex
 html: $(DOXYGEN_CONF)
-	@# Generate the html documentation
-	@doxygen $(DOXYGEN_CONF)
-	@echo "<meta http-equiv=\"REFRESH\" content=\"0;URL=CodeDocumentation/html/index.html\">" > CodeDocumentation.html
-	@cat warnings.log 1>&2
-	@# Generate the log of undocumented methods
-	@( cat $(DOXYGEN_CONF) ; echo "GENERATE_HTML=NO" ; echo "EXTRACT_ALL=NO" ; echo "WARN_LOGFILE=undoc.log" ; echo "QUIET=YES" ) | doxygen - &> /dev/null
+	doxygen $(DOXYGEN_CONF)
+	rm -f CodeDocumentation.html
+	ln -s CodeDocumentation/html/index.html CodeDocumentation.html

 clean:
 	rm -rf $(DOXYGEN_CONF) CodeDocumentation CodeDocumentation.html *~
-	rm -rf  undoc.log warnings.log

 $(DOXYGEN_CONF): $(MFEM_DIR)/doc/$(DOXYGEN_CONF).in
-	@sed -e 's%@MFEM_SOURCE_DIR@%$(MFEM_DIR)%g' $(<) \
+	sed -e 's%@MFEM_SOURCE_DIR@%$(MFEM_DIR)%g' $(<) \
 	  > $(DOXYGEN_CONF)
-
@@ -0,0 +1,208 @@
+body {
+    padding-top: 70px;
+}
+
+/* hack to increase height of headers to make #anchors work with the top nav-bar,
+   (note: we only want this on pages with TOC, otherwise there are other problems) */
+div.col-md-9 h1[id]::before,
+div.col-md-9 h2[id]::before,
+div.col-md-9 h3[id]::before,
+div.col-md-9 h4[id]::before,
+div.col-md-9 h5[id]::before,
+div.col-md-9 h6[id]::before {
+    content: "";
+    display: block;
+    margin-top: -75px;
+    height: 75px;
+}
+
+img {
+    max-width: 100%;
+    height: auto;
+}
+
+pre {
+    overflow-x: auto;
+}
+
+pre code {
+    overflow-wrap: normal;
+    white-space: pre;
+    font-size: 13.5px;
+}
+
+label {
+    font-weight: normal;
+}
+
+ul.nav li.main {
+    font-weight: bold;
+}
+
+div.col-md-3 {
+    padding-right: 0;
+}
+
+div.col-md-9, div.col-md-12 {
+    padding-bottom: 100px;
+}
+
+div.source-links {
+    float: right;
+}
+
+img {
+    display: block;
+    margin-left: auto;
+    margin-right: auto;
+    margin-top: 25px;
+    margin-bottom: 25px;
+}
+
+img.floatright {
+    display: block;
+    float: right;
+    margin-top: 0;
+    margin-left: 25px;
+    margin-bottom: 25px;
+}
+
+img.teamphoto {
+    box-shadow: 4px 4px 4px #999;
+}
+
+p.centered {
+    margin-left: auto;
+    margin-right: auto;
+    text-align: center;
+}
+
+/*label {
+    display: inline-block;
+    margin-bottom: 5px;
+    font-weight: normal;
+}*/
+
+/*
+ * Side navigation
+ *
+ * Scrollspy and affixed enhanced navigation to highlight sections and secondary
+ * sections of docs content.
+ */
+
+/* By default it's not affixed in mobile views, so undo that */
+.bs-sidebar.affix {
+    position: static;
+}
+
+.bs-sidebar.well {
+    padding: 0;
+}
+
+/* First level of nav */
+.bs-sidenav {
+    /*margin-top: 10px;
+    margin-bottom: 10px;*/
+    padding-top:    10px;
+    padding-bottom: 10px;
+    border-radius: 5px;
+}
+
+/* All levels of nav */
+.bs-sidebar .nav > li > a {
+    display: block;
+    padding: 5px 20px;
+    z-index: 1;
+}
+.bs-sidebar .nav > li > a:hover,
+.bs-sidebar .nav > li > a:focus {
+    text-decoration: none;
+    border-right: 1px solid;
+}
+.bs-sidebar .nav > .active > a,
+.bs-sidebar .nav > .active:hover > a,
+.bs-sidebar .nav > .active:focus > a {
+    font-weight: bold;
+    background-color: transparent;
+    border-right: 1px solid;
+}
+
+/* Nav: second level (shown on .active) */
+.bs-sidebar .nav .nav {
+    display: none; /* Hide by default, but at >768px, show it */
+    margin-bottom: 8px;
+}
+.bs-sidebar .nav .nav > li > a {
+    padding-top:    3px;
+    padding-bottom: 3px;
+    padding-left: 30px;
+    font-size: 90%;
+}
+
+/* Show and affix the side nav when space allows it */
+@media (min-width: 992px) {
+    .bs-sidebar .nav > .active > ul {
+        display: block;
+    }
+    /* Widen the fixed sidebar */
+    .bs-sidebar.affix,
+    .bs-sidebar.affix-bottom {
+        width: 213px;
+    }
+    .bs-sidebar.affix {
+        position: fixed; /* Undo the static from mobile first approach */
+        top: 80px;
+    }
+    .bs-sidebar.affix-bottom {
+        position: absolute; /* Undo the static from mobile first approach */
+    }
+    .bs-sidebar.affix-bottom .bs-sidenav,
+    .bs-sidebar.affix .bs-sidenav {
+        margin-top: 0;
+        margin-bottom: 0;
+    }
+}
+@media (min-width: 1200px) {
+    /* Widen the fixed sidebar again */
+    .bs-sidebar.affix-bottom,
+    .bs-sidebar.affix {
+        width: 263px;
+    }
+}
+
+
+/* Sticky footer styles
+-------------------------------------------------- */
+html {
+  position: relative;
+  min-height: 100%;
+}
+body {
+  /* Margin bottom by footer height */
+  margin-bottom: 50px;
+}
+.footer {
+  position: absolute;
+  bottom: 0;
+  width: 100%;
+  /* Set the fixed height of the footer here */
+  height: 50px;
+  background-color: #eeeeee;
+  overflow: hidden;
+}
+
+
+/* Custom page CSS
+-------------------------------------------------- */
+/* Not required for template or sticky footer method. */
+
+.container .text-muted {
+  margin-top: 17px;
+  margin-bottom: 0;
+}
+.container .alignleft {
+  float: left;
+}
+.container .alignright {
+  float: right;
+}
--- a/Show More
+++ b/Show More
Author	SHA1	Message	Date
Dylan Copeland	b51732c827	Extended PA for some vector mass and curl integrators to handle diagonal matrix coefficients. Added unit tests.	2020-03-31 11:56:02 -07:00
Dylan Copeland	d838c6b33b	Implemented PA for MixedVectorCurlIntegrator and MixedVectorWeakCurlIntegrator. Added unit tests for these integrators.	2020-03-30 18:02:46 -07:00