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2c3ce1b4db |
+1
-3
@@ -43,9 +43,7 @@ before_build:
|
||||
build_script:
|
||||
- cmake --build build_parallel
|
||||
- cmake --build build_serial
|
||||
- cmake --build build_serial --target exec
|
||||
|
||||
after_build:
|
||||
# - cmake --build build_parallel --target check
|
||||
- cmake --build build_serial --target RUN_TESTS
|
||||
|
||||
- cmake --build build_serial --target check
|
||||
|
||||
-27
@@ -45,8 +45,6 @@ examples/ex[1-9]
|
||||
examples/ex[1-9]p
|
||||
examples/ex1[04-9]
|
||||
examples/ex1[0-9]p
|
||||
examples/ex2[0-9]
|
||||
examples/ex2[0-9]p
|
||||
|
||||
examples/refined.mesh
|
||||
examples/displaced.mesh
|
||||
@@ -78,13 +76,6 @@ examples/vortex-?-init.*
|
||||
examples/vortex-?-final.*
|
||||
examples/deformation.*
|
||||
examples/pressure.*
|
||||
examples/ex20.dat
|
||||
examples/ex20p_?????.dat
|
||||
examples/gnuplot_ex20.inp
|
||||
examples/gnuplot_ex20p.inp
|
||||
examples/ex22*.mesh
|
||||
examples/ex22*.sol
|
||||
examples/ex22p_*.*
|
||||
|
||||
examples/sundials/ex9
|
||||
examples/sundials/ex1[06]
|
||||
@@ -121,15 +112,6 @@ examples/petsc/deformed.*
|
||||
examples/petsc/velocity.*
|
||||
examples/petsc/elastic_energy.*
|
||||
|
||||
examples/pumi/ex1
|
||||
examples/pumi/ex[126]p
|
||||
|
||||
examples/pumi/refined.mesh
|
||||
examples/pumi/sol.gf
|
||||
examples/pumi/mesh.*
|
||||
examples/pumi/sol.*
|
||||
examples/pumi/displaced.mesh
|
||||
|
||||
miniapps/electromagnetics/volta
|
||||
miniapps/electromagnetics/tesla
|
||||
miniapps/electromagnetics/maxwell
|
||||
@@ -142,20 +124,16 @@ miniapps/electromagnetics/Joule_*
|
||||
|
||||
miniapps/meshing/mobius-strip
|
||||
miniapps/meshing/klein-bottle
|
||||
miniapps/meshing/toroid
|
||||
miniapps/meshing/mesh-explorer
|
||||
miniapps/meshing/shaper
|
||||
miniapps/meshing/extruder
|
||||
miniapps/meshing/mesh-optimizer
|
||||
miniapps/meshing/pmesh-optimizer
|
||||
|
||||
miniapps/meshing/mobius-strip.mesh
|
||||
miniapps/meshing/klein-bottle.mesh
|
||||
miniapps/meshing/toroid-*.mesh
|
||||
miniapps/meshing/mesh-explorer.mesh
|
||||
miniapps/meshing/partitioning.txt
|
||||
miniapps/meshing/shaper.mesh
|
||||
miniapps/meshing/extruder.mesh
|
||||
miniapps/meshing/optimized*
|
||||
miniapps/meshing/perturbed*
|
||||
|
||||
@@ -169,7 +147,6 @@ miniapps/performance/sol.*
|
||||
miniapps/tools/display-basis
|
||||
miniapps/tools/load-dc
|
||||
miniapps/tools/convert-dc
|
||||
miniapps/tools/lor-transfer
|
||||
|
||||
miniapps/nurbs/ex1
|
||||
miniapps/nurbs/ex1p
|
||||
@@ -179,7 +156,3 @@ miniapps/nurbs/mesh.*
|
||||
miniapps/nurbs/sol.*
|
||||
miniapps/nurbs/mode_*
|
||||
miniapps/nurbs/Example1*
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
|
||||
@@ -205,7 +205,6 @@ install:
|
||||
else
|
||||
echo "Reusing cached hypre-2.10.0b/";
|
||||
fi;
|
||||
ln -s hypre-2.10.0b hypre;
|
||||
else
|
||||
echo "Serial build, not using hypre";
|
||||
fi
|
||||
|
||||
@@ -8,192 +8,11 @@
|
||||
http://mfem.org
|
||||
|
||||
|
||||
Version 4.0-RC2, Apr 24, 2019
|
||||
=============================
|
||||
|
||||
Requirements and Limitations
|
||||
----------------------------
|
||||
- This is a release candidate for mfem-4.0.
|
||||
- Use at your own risk -- not everything will work and the API may change.
|
||||
- We are looking for feedback from friendly users.
|
||||
- Unlike previous MFEM releases, this version requires a C++11 compiler.
|
||||
|
||||
- GPU-related limitations:
|
||||
* Hypre preconditioners are not yet available in GPU mode.
|
||||
* Only constant coefficients are currently supported on GPUs.
|
||||
* Full-assembly (on device), element assembly, and matrix-free bilinear forms
|
||||
are not supported yet. Element batching is currently ignored.
|
||||
* Partial assembly kernels are not implemented yet for simplices.
|
||||
|
||||
GPU support
|
||||
-----------
|
||||
- Added initial support for hardware devices, such as GPUs, and programming
|
||||
models, such as CUDA, OCCA, RAJA and OpenMP.
|
||||
|
||||
- The GPU/device support is based on MFEM's new backends and kernels working
|
||||
seamlessly with a new lightweight device/host memory manager. The kernels can
|
||||
be implemented either in OCCA, or as a simple wrapper around for-loops, which
|
||||
can then be dispatched to RAJA and native backends. See the files forall.hpp
|
||||
and mem_manager.hpp in the general/ directory.
|
||||
|
||||
- Several of the MFEM example codes (ex1, ex1p, ex6, and ex6p) can now take
|
||||
advantage of GPU acceleration with the backend selectable at runtime. Many of
|
||||
the linear algebra and finite element operations (e.g. partially assembled
|
||||
bilinear forms) have been extended to take advantage of kernel acceleration by
|
||||
simply replacing loops with the MFEM_FORALL() macro.
|
||||
|
||||
- In addition to pure CUDA, the library currently supports OCCA, RAJA and OpenMP
|
||||
kernels, which could be mixed and matched in different parts of the same
|
||||
application. We plan on adding support for more programming models and devices
|
||||
in the future, without the need for significant modifications in user code.
|
||||
The list of current backends is: "occa-cuda", "raja-cuda", "cuda", "occa-omp",
|
||||
"raja-omp", "omp", "occa-cpu", "raja-cpu", and "cpu".
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Added support for a general "low-order refined"-to-"high-order" transfer of
|
||||
GridFunction data from a "low-order refined" (LOR) space defined on a refined
|
||||
mesh to a "high-order" (HO) finite element space defined on a coarse mesh. See
|
||||
the new classes InterpolationGridTransfer and L2ProjectionGridTransfer and the
|
||||
new LOR Transfer miniapp: miniapps/tools/lor-transfer.cpp.
|
||||
|
||||
- Added support for derefinement of vector (RT + ND) spaces.
|
||||
|
||||
- Added element flux, and flux energy computation in class ElasticityIntegrator,
|
||||
allowing for the use of Zienkiewicz-Zhu type error estimators with the
|
||||
integrator. For an illustration of this addition, see the new Example 22.
|
||||
|
||||
- Added a variety of coefficients which are sums or products of existing
|
||||
coefficients as well as grid function coefficients which return the
|
||||
divergence, gradient, or curl of their GridFunctions.
|
||||
|
||||
Support for wedge elements and meshes with mixed element types
|
||||
--------------------------------------------------------------
|
||||
- Added support for wedge-shaped mesh elements of arbitrary order (with Geometry
|
||||
type PRISM) which have two triangular faces and three quadrilateral faces.
|
||||
Several examples of such meshes can be found in the data/ directory.
|
||||
|
||||
- Added H1 and L2 finite elements of arbitrary order for Wedge elements.
|
||||
|
||||
- Added support for mixed meshes containing triangles and quadrilaterals in 2D
|
||||
or tetrahedra, wedges, and hexahedra in 3D. This includes support for uniform
|
||||
refinement of such meshes. Several examples of such meshes can be found in the
|
||||
data/ directory.
|
||||
|
||||
- Added support for reading and writing linear and quadratic meshes containing
|
||||
wedge elements in VTK mesh format. Several examples of such meshes can be
|
||||
found in the data/ directory.
|
||||
|
||||
Other meshing improvements
|
||||
--------------------------
|
||||
- Improved the uniform refinement of tetrahedral meshes (also part of the
|
||||
uniform refinement of mixed 3D meshes). The previous refinement algorithm is
|
||||
still available as an option in Mesh::UniformRefinement. Both can be used in
|
||||
the updated Mesh Explorer miniapp.
|
||||
|
||||
- The local tetrahedral mesh refinement algorithm in serial and in parallel now
|
||||
follows precisely the paper:
|
||||
|
||||
D. Arnold, A. Mukherjee, and L. Pouly, "Locally Adapted Tetrahedral Meshes
|
||||
Using Bisection", SIAM J. Sci. Comput. 22 (2000), 431–448.
|
||||
|
||||
This guarantees that the shape regularity of the elements will be preserved
|
||||
under refinement.
|
||||
|
||||
- Added support for parallel communication groups on non-conforming meshes.
|
||||
|
||||
- Improved parallel partitioning of non-conforming meshes. If the coarse mesh
|
||||
elements are ordered as a sequence of face-neighbors, the parallel partitions
|
||||
are now guaranteed to be continuous. To that end, inline quadrilateral and
|
||||
hexahedral meshes are now by default ordered along a space-filling curve.
|
||||
|
||||
- A boundary in a NURBS mesh can now be connected with another boundary. Such a
|
||||
periodic NURBS mesh is a simple way to impose periodic boundary conditions.
|
||||
|
||||
- Added support for reading linear and quadratic 2D quadrilateral and triangular
|
||||
Cubit meshes.
|
||||
|
||||
- The TMOP mesh optimization algorithms were extended to support user-defined
|
||||
space-dependent limiting terms. Improved the TMOP objective functions by more
|
||||
accurate normalization of the different terms.
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new meshing miniapp, Toroid, which can produce a variety of torus
|
||||
shaped meshes by twisting a stack of wedges or hexahedra.
|
||||
|
||||
- Added a new meshing miniapp, Extruder, that demonstrates the capability to
|
||||
produce 3D meshes by extruding 2D meshes.
|
||||
|
||||
- Added a simple miniapp, LOR Transfer, for visualizing the actions of the
|
||||
transfer operators between a high-order and a low-order refined spaces.
|
||||
|
||||
- Added a new example, Example 20/20p, that solves a system of 1D ODEs derived
|
||||
from a Hamiltonian. The example demonstrates the use of the variable order,
|
||||
symplectic integration algorithm implemented in class SIAVSolver.
|
||||
|
||||
- Added a new example, Example 22/22p, that illustrates the use of AMR to solve
|
||||
a linear elasticity problem. This is an extension of Example 2/2p.
|
||||
|
||||
New and improved solvers and preconditioners
|
||||
--------------------------------------------
|
||||
- Added support for parallel ILU preconditioning via hypre's Euclid solver.
|
||||
|
||||
- Added support for STRUMPACK v3 with a small API change in the class
|
||||
STRUMPACKSolver, see "API changes" below.
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- In SparseMatrix added the option to perform MultTranspose() by matvec with
|
||||
computed and stored transpose matrix. This is required for deterministic
|
||||
results when using devices such as CUDA and OpenMP.
|
||||
|
||||
- Added unit tests based on the Catch++ library.
|
||||
|
||||
- Renamed the option MFEM_USE_OPENMP to MFEM_USE_LEGACY_OPENMP. This legacy
|
||||
option is deprecated and planned for removal in a future release. The original
|
||||
option name, MFEM_USE_OPENMP, is now used to enable the new OpenMP backends in
|
||||
the new kernels.
|
||||
|
||||
- Altered the way FGMRES counts its iterations so that it matches GMRES.
|
||||
|
||||
- Various other simplifications, extensions, and bugfixes in the code.
|
||||
|
||||
API changes
|
||||
-----------
|
||||
- In multiple places, use Geometry::Type instead of int, where appropriate.
|
||||
- In multiple places, use Element::Type instead of int, where appropriate.
|
||||
- The Mesh methods GetElementBaseGeometry and GetBdrElementBaseGeometry no
|
||||
longer have a default value for their parameter, they only work with an
|
||||
explicitly given index.
|
||||
- In class Mesh, added methods useful for queries regarding the types of
|
||||
elements present in the mesh: HasGeometry, GetNumGeometries, GetGeometries,
|
||||
and class Mesh::GeometryList.
|
||||
- The struct CoarseFineTransformations (returned by the Mesh method
|
||||
GetRefinementTransforms) now stores the embedding matrices separately for each
|
||||
Geometry::Type.
|
||||
- In class ParMesh, replaced the method GroupNFaces with two new methods:
|
||||
GroupNTriangles and GroupNQuadrilaterals. Also, replaced GroupFace with two
|
||||
methods: GroupTriangle and GroupQuadrilateral.
|
||||
- In class ParMesh, made the two RefineGroups methods protected.
|
||||
- Removed the virtual method Element::GetRefinementFlag, it is only used by the
|
||||
derived class Tetrahedron.
|
||||
- Added new methods: Array::CopyTo, Tetrahedron::Init.
|
||||
- In class STRUMPACKSolver, the method SetMC64Job() was replaced by the new
|
||||
methods: DisableMatching(), EnableMatching(), and EnableParallelMatching().
|
||||
|
||||
|
||||
Version 3.4, released on May 29, 2018
|
||||
=====================================
|
||||
|
||||
More general and efficient mesh adaptivity
|
||||
------------------------------------------
|
||||
- Added support for PUMI, the Parallel Unstructured Mesh Infrastructure from
|
||||
https://scorec.rpi.edu/pumi. PUMI is an unstructured, distributed mesh data
|
||||
management system that is capable of handling general non-manifold models and
|
||||
effectively supports automated adaptive analysis. PUMI enables for the first
|
||||
time support for parallel unstructured modifications of MFEM meshes.
|
||||
Version 3.3.3 (development)
|
||||
===========================
|
||||
|
||||
More efficient non-conforming adaptive mesh refinement
|
||||
------------------------------------------------------
|
||||
- Significantly reduced MPI communication in the construction of the parallel
|
||||
prolongation matrix in ParFiniteElementSpace, for much improved parallel
|
||||
scaling of non-conforming AMR on hundreds of thousands of MPI tasks. The
|
||||
@@ -262,11 +81,6 @@ New and updated examples and miniapps
|
||||
NURBS meshes in the miniapps/nurbs directory. Currently the directory contains
|
||||
variable order NURBS versions of examples 1, 1p and 11p.
|
||||
|
||||
- Added PUMI versions of examples ex1, ex1p, ex2 and ex6p in a new examples/pumi
|
||||
directory. The new examples demonstrate the PUMI APIs for parallel and serial
|
||||
mesh loading (ex1 and ex1p), applying BCs using classification (ex2), and
|
||||
performing parallel mesh adaptation (ex6p).
|
||||
|
||||
- Added two new miniapps related to DataCollection I/O in miniapps/tools:
|
||||
load-dc.cpp can be used to visualize fields saved via DataCollection classes;
|
||||
convert-dc.cpp demonstrates how to convert between MFEM's different concrete
|
||||
|
||||
+15
-96
@@ -13,11 +13,6 @@ cmake_minimum_required(VERSION 2.8.11)
|
||||
set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
|
||||
"Path to optional user configuration file.")
|
||||
|
||||
# Require C++11 and disable compiler-specific extensions
|
||||
set(CMAKE_CXX_STANDARD 11)
|
||||
set(CMAKE_CXX_STANDARD_REQUIRED ON)
|
||||
set(CMAKE_CXX_EXTENSIONS OFF)
|
||||
|
||||
# Load user settings before the defaults - this way the defaults will not
|
||||
# overwrite the user set options. If the user has not set all options, we still
|
||||
# have the defaults.
|
||||
@@ -50,7 +45,7 @@ project(mfem NONE)
|
||||
# Current version of MFEM, see also `makefile`.
|
||||
# mfem_VERSION = (string)
|
||||
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
|
||||
set(${PROJECT_NAME}_VERSION 3.4.1)
|
||||
set(${PROJECT_NAME}_VERSION 3.3.3)
|
||||
|
||||
# Prohibit in-source build
|
||||
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
|
||||
@@ -86,13 +81,6 @@ include("${CMAKE_CURRENT_SOURCE_DIR}/config/XSDKDefaults.cmake")
|
||||
|
||||
# Enable languages.
|
||||
enable_language(CXX)
|
||||
if (MFEM_USE_CUDA)
|
||||
# MFEM_USE_CUDA requires CMake 3.8 or newer (for direct CUDA support)
|
||||
cmake_minimum_required(VERSION 3.8 FATAL_ERROR)
|
||||
enable_language(CUDA)
|
||||
message(STATUS "Using CUDA architecture: ${CUDA_ARCH}")
|
||||
endif()
|
||||
|
||||
if (XSDK_ENABLE_C)
|
||||
enable_language(C)
|
||||
endif()
|
||||
@@ -151,7 +139,7 @@ if (MFEM_USE_MPI)
|
||||
set(PETSC_INCLUDE_DIRS ${PETSC_INCLUDES})
|
||||
endif()
|
||||
else()
|
||||
set(PKGS_NEED_MPI SUPERLU PETSC STRUMPACK PUMI)
|
||||
set(PKGS_NEED_MPI SUPERLU PETSC STRUMPACK)
|
||||
foreach(PKG IN LISTS PKGS_NEED_MPI)
|
||||
if (MFEM_USE_${PKG})
|
||||
message(STATUS "Disabling package ${PKG} - requires MPI")
|
||||
@@ -182,11 +170,12 @@ if (MFEM_USE_LAPACK)
|
||||
endif()
|
||||
|
||||
# OpenMP
|
||||
if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
|
||||
if (NOT MFEM_THREAD_SAFE AND MFEM_USE_LEGACY_OPENMP)
|
||||
message(FATAL_ERROR " *** MFEM_USE_LEGACY_OPENMP requires MFEM_THREAD_SAFE=ON.")
|
||||
if (MFEM_USE_OPENMP)
|
||||
if (MFEM_THREAD_SAFE)
|
||||
find_package(OpenMP REQUIRED)
|
||||
else()
|
||||
message(FATAL_ERROR " *** MFEM_USE_OPENMP requires MFEM_THREAD_SAFE=ON.")
|
||||
endif()
|
||||
find_package(OpenMP REQUIRED)
|
||||
endif()
|
||||
|
||||
# SuiteSparse (before SUNDIALS which may depend on KLU)
|
||||
@@ -257,48 +246,6 @@ if (MFEM_USE_SIDRE)
|
||||
find_package(Axom REQUIRED Sidre SLIC axom_utils)
|
||||
endif()
|
||||
|
||||
# PUMI
|
||||
if (MFEM_USE_PUMI)
|
||||
# If PUMI_DIR was specified, only link to that directory,
|
||||
# i.e. don't link to another installation in /usr/lib by mistake
|
||||
find_package(SCOREC 2.1.0 REQUIRED OPTIONAL_COMPONENTS gmi_sim
|
||||
CONFIG PATHS ${PUMI_DIR} NO_DEFAULT_PATH)
|
||||
if (SCOREC_FOUND)
|
||||
# Define a header file with the MFEM_USE_SIMMETRIX preprocessor variable
|
||||
set(MFEM_USE_SIMMETRIX ${SCOREC_gmi_sim_FOUND})
|
||||
set(PUMI_FOUND ${SCOREC_FOUND})
|
||||
get_target_property(PUMI_INCLUDE_DIRS
|
||||
SCOREC::apf INTERFACE_INCLUDE_DIRECTORIES)
|
||||
set(PUMI_LIBRARIES SCOREC::core)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# CUDA
|
||||
if (MFEM_USE_CUDA)
|
||||
set(CMAKE_CUDA_STANDARD 11)
|
||||
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
|
||||
set(CMAKE_CUDA_EXTENSIONS OFF)
|
||||
set(CMAKE_CUDA_FLAGS "-arch=${CUDA_ARCH} --expt-extended-lambda"
|
||||
CACHE STRING "CUDA flags set for MFEM" FORCE)
|
||||
if (MFEM_USE_MPI)
|
||||
set(CUDA_CCBIN_COMPILER ${MPI_CXX_COMPILER})
|
||||
else()
|
||||
set(CUDA_CCBIN_COMPILER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
string(APPEND CMAKE_CUDA_FLAGS " -ccbin ${CUDA_CCBIN_COMPILER}")
|
||||
set(MFEM_USE_MM YES CACHE BOOL "Enable MFEM's memory manager" FORCE)
|
||||
endif()
|
||||
|
||||
# OCCA
|
||||
if (MFEM_USE_OCCA)
|
||||
find_package(OCCA REQUIRED)
|
||||
endif()
|
||||
|
||||
# RAJA
|
||||
if (MFEM_USE_RAJA)
|
||||
find_package(RAJA REQUIRED)
|
||||
endif()
|
||||
|
||||
# MFEM_TIMER_TYPE
|
||||
if (NOT DEFINED MFEM_TIMER_TYPE)
|
||||
if (APPLE)
|
||||
@@ -323,8 +270,8 @@ endif()
|
||||
# integers, the METIS header (with 32-bit indices, as used by mfem) needs to
|
||||
# be before SuiteSparse.
|
||||
set(MFEM_TPLS MPI_CXX OPENMP BLAS LAPACK METIS HYPRE SuiteSparse SUNDIALS PETSC
|
||||
MESQUITE SuperLUDist STRUMPACK AXOM CONDUIT GECKO GNUTLS NETCDF MPFR PUMI
|
||||
POSIXCLOCKS MFEMBacktrace ZLIB OCCA RAJA)
|
||||
MESQUITE SuperLUDist STRUMPACK AXOM CONDUIT GECKO GNUTLS NETCDF MPFR POSIXCLOCKS
|
||||
MFEMBacktrace ZLIB)
|
||||
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
|
||||
set(TPL_LIBRARIES "")
|
||||
set(TPL_INCLUDE_DIRS "")
|
||||
@@ -349,6 +296,9 @@ message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
|
||||
message(STATUS "MFEM version: v${MFEM_VERSION_STRING}")
|
||||
message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
|
||||
|
||||
# Windows specific
|
||||
set(_USE_MATH_DEFINES ${WIN32})
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
# Define and configure the MFEM library
|
||||
#-------------------------------------------------------------------------------
|
||||
@@ -360,13 +310,6 @@ set(MFEM_SOURCE_DIRS general linalg mesh fem)
|
||||
foreach(DIR IN LISTS MFEM_SOURCE_DIRS)
|
||||
add_subdirectory(${DIR})
|
||||
endforeach()
|
||||
|
||||
if (MFEM_USE_CUDA)
|
||||
foreach(file IN LISTS SOURCES)
|
||||
set_property(SOURCE ${file} PROPERTY LANGUAGE CUDA)
|
||||
endforeach()
|
||||
endif()
|
||||
|
||||
add_subdirectory(config)
|
||||
set(MASTER_HEADERS
|
||||
${PROJECT_SOURCE_DIR}/mfem.hpp
|
||||
@@ -377,11 +320,6 @@ set(CMAKE_INSTALL_RPATH_USE_LINK_PATH ON CACHE BOOL "")
|
||||
set(CMAKE_INSTALL_RPATH "${_lib_path}" CACHE PATH "")
|
||||
set(CMAKE_INSTALL_NAME_DIR "${_lib_path}" CACHE PATH "")
|
||||
|
||||
set(MFEM_SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR} CACHE PATH
|
||||
"The MFEM source directory" FORCE)
|
||||
set(MFEM_INSTALL_DIR ${CMAKE_INSTALL_PREFIX} CACHE PATH
|
||||
"The MFEM install directory" FORCE)
|
||||
|
||||
# Declaring the library
|
||||
add_library(mfem ${SOURCES} ${HEADERS} ${MASTER_HEADERS})
|
||||
# message(STATUS "TPL_LIBRARIES = ${TPL_LIBRARIES}")
|
||||
@@ -434,9 +372,6 @@ endif()
|
||||
# Enable testing if required
|
||||
if (MFEM_ENABLE_TESTING)
|
||||
enable_testing()
|
||||
set(MFEM_ALL_TESTS_TARGET_NAME tests)
|
||||
add_mfem_target(${MFEM_ALL_TESTS_TARGET_NAME} OFF)
|
||||
add_subdirectory(tests EXCLUDE_FROM_ALL)
|
||||
endif()
|
||||
|
||||
# Define a target that all examples and miniapps will depend on.
|
||||
@@ -456,9 +391,7 @@ add_subdirectory(miniapps EXCLUDE_FROM_ALL)
|
||||
# Target to build all executables, i.e. everything.
|
||||
add_custom_target(exec)
|
||||
add_dependencies(exec
|
||||
${MFEM_ALL_EXAMPLES_TARGET_NAME}
|
||||
${MFEM_ALL_MINIAPPS_TARGET_NAME}
|
||||
${MFEM_ALL_TESTS_TARGET_NAME})
|
||||
${MFEM_ALL_EXAMPLES_TARGET_NAME} ${MFEM_ALL_MINIAPPS_TARGET_NAME})
|
||||
# Here, we want to "add_dependencies(test exec)". However, dependencies for
|
||||
# 'test' (and other built-in targets) can not be added with add_dependencies():
|
||||
# - https://gitlab.kitware.com/cmake/cmake/issues/8438
|
||||
@@ -479,12 +412,12 @@ endif()
|
||||
# Add 'check' target - quick test
|
||||
if (NOT MFEM_USE_MPI)
|
||||
add_custom_target(check
|
||||
${CMAKE_CTEST_COMMAND} -R \"^ex1_ser\" -C ${CMAKE_CFG_INTDIR}
|
||||
${CMAKE_CTEST_COMMAND} -R '^ex1_ser' -C ${CMAKE_CFG_INTDIR}
|
||||
USES_TERMINAL)
|
||||
add_dependencies(check ex1)
|
||||
else()
|
||||
add_custom_target(check
|
||||
${CMAKE_CTEST_COMMAND} -R \"^ex1p\" -C ${CMAKE_CFG_INTDIR}
|
||||
${CMAKE_CTEST_COMMAND} -R '^ex1p' -C ${CMAKE_CFG_INTDIR}
|
||||
USES_TERMINAL)
|
||||
add_dependencies(check ex1p)
|
||||
endif()
|
||||
@@ -529,13 +462,6 @@ install(DIRECTORY ${MFEM_SOURCE_DIRS}
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem
|
||||
FILES_MATCHING PATTERN "*.hpp")
|
||||
|
||||
# Install the okl files
|
||||
if (MFEM_USE_OCCA)
|
||||
install(DIRECTORY ${MFEM_SOURCE_DIRS}
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem
|
||||
FILES_MATCHING PATTERN "*.okl")
|
||||
endif()
|
||||
|
||||
# Install ${HEADERS}
|
||||
# ---
|
||||
# foreach (HDR ${HEADERS})
|
||||
@@ -601,10 +527,3 @@ install(FILES
|
||||
# Install the export set for use with the install-tree
|
||||
install(EXPORT ${PROJECT_NAME_UC}Targets
|
||||
DESTINATION ${INSTALL_CMAKE_DIR})
|
||||
|
||||
#-------------------------------------------------------------------------------
|
||||
# Create 'config.mk' from 'config.mk.in' for the build and install locations and
|
||||
# define install rules for 'config.mk' and 'test.mk'
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
mfem_export_mk_files()
|
||||
|
||||
+6
-124
@@ -1,15 +1,3 @@
|
||||
<p align="center">
|
||||
<a href="http://mfem.org/"><img alt="mfem" src="http://mfem.org/img/logo-300.png"></a>
|
||||
</p>
|
||||
|
||||
<p align="center">
|
||||
<a href="https://github.com/mfem/mfem/blob/master/COPYRIGHT"><img alt="License" src="https://img.shields.io/badge/License-LGPL--2.1-brightgreen.svg"></a>
|
||||
<a href="https://travis-ci.org/mfem/mfem"><img alt="Build Status" src="https://travis-ci.org/mfem/mfem.svg?branch=master"></a>
|
||||
<a href="https://ci.appveyor.com/project/mfem/mfem"><img alt="Build Status" src="https://ci.appveyor.com/api/projects/status/19non9sqm6msi2wy?svg=true"></a>
|
||||
<a href="http://mfem.github.io/doxygen/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
|
||||
</p>
|
||||
|
||||
|
||||
# How to Contribute
|
||||
|
||||
The MFEM team welcomes contributions at all levels: bugfixes; code
|
||||
@@ -28,7 +16,6 @@ See the [Quick Summary](#quick-summary) section for the main highlights of our
|
||||
GitHub workflow. For more details, consult the following sections and refer
|
||||
back to them before issuing pull requests:
|
||||
|
||||
- [Code Overview](#code-overview)
|
||||
- [GitHub Workflow](#github-workflow)
|
||||
- [MFEM Organization](#mfem-organization)
|
||||
- [New Feature Development](#new-feature-development)
|
||||
@@ -66,112 +53,6 @@ Origin](#developers-certificate-of-origin-11) at the end of this file.*
|
||||
- Don't hesitate to [contact us](#contact-information) if you have any questions.
|
||||
|
||||
|
||||
### Code Overview
|
||||
|
||||
- The MFEM library uses object-orient design principles which reflect, in code,
|
||||
the independent mathematical concepts of meshing, linear algebra and finite
|
||||
element spaces and operators.
|
||||
|
||||
- The MFEM source code has the following structure:
|
||||
```
|
||||
.
|
||||
├── config
|
||||
│ └── cmake
|
||||
│ └── modules
|
||||
├── data
|
||||
├── doc
|
||||
│ └── web
|
||||
│ └── examples
|
||||
├── examples
|
||||
│ ├── petsc
|
||||
│ ├── pumi
|
||||
│ └── sundials
|
||||
├── fem
|
||||
├── general
|
||||
├── linalg
|
||||
├── mesh
|
||||
├── miniapps
|
||||
│ ├── common
|
||||
│ ├── electromagnetics
|
||||
│ ├── meshing
|
||||
│ ├── nurbs
|
||||
│ ├── performance
|
||||
│ └── tools
|
||||
└── tests
|
||||
├── unit
|
||||
│ ├── ...
|
||||
└── ...
|
||||
|
||||
```
|
||||
|
||||
- The main directories are `fem/`, `mesh/` and `linalg/` containing the C++
|
||||
classes implementing the finite element, mesh and linear algebra concepts
|
||||
respectively.
|
||||
|
||||
- The main mesh classes are:
|
||||
+ [`Mesh`](http://mfem.github.io/doxygen/html/classmfem_1_1Mesh.html)
|
||||
+ [`NCMesh`](http://mfem.github.io/doxygen/html/classmfem_1_1NCMesh.html)
|
||||
+ [`Element`](http://mfem.github.io/doxygen/html/classmfem_1_1Element.html)
|
||||
+ [`ElementTransformation`](http://mfem.github.io/doxygen/html/classmfem_1_1ElementTransformation.html)
|
||||
|
||||
- The main finite element classes are:
|
||||
+ [`FiniteElement`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementCollection`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementSpace`](http://mfem.github.io/doxygen/html/classmfem_1_1FiniteElementSpace.html)
|
||||
+ [`GridFunction`](http://mfem.github.io/doxygen/html/classmfem_1_1GridFunction.html)
|
||||
+ [`BilinearFormIntegrator`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html)
|
||||
+ [`LinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1MixedBilinearForm.html)
|
||||
|
||||
- The main linear algebra classes and sources are
|
||||
+ [`Operator`](http://mfem.github.io/doxygen/html/classmfem_1_1Operator.html) and [`BilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html)
|
||||
+ [`Vector`](http://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1LinearForm.html)
|
||||
+ [`DenseMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1SparseMatrix.html)
|
||||
+ Sparse [smoothers](http://mfem.github.io/doxygen/html/sparsesmoothers_8hpp.html) and linear [solvers](http://mfem.github.io/doxygen/html/solvers_8hpp.html)
|
||||
|
||||
- Parallel MPI objects in MFEM inherit their serial counterparts, so a parallel
|
||||
mesh for example is just a serial mesh on each task plus the information on
|
||||
shared geometric entities between different tasks. The parallel source files
|
||||
have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
|
||||
|
||||
- The main parallel classes are
|
||||
+ [`ParMesh`](http://mfem.github.io/doxygen/html/solvers_8hpp.html)
|
||||
+ [`ParNCMesh`](http://mfem.github.io/doxygen/html/classmfem_1_1ParMesh.html)
|
||||
+ [`ParFiniteElementSpace`](http://mfem.github.io/doxygen/html/classmfem_1_1ParFiniteElementSpace.html)
|
||||
+ [`ParGridFunction`](http://mfem.github.io/doxygen/html/classmfem_1_1ParGridFunction.html)
|
||||
+ [`ParBilinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](http://mfem.github.io/doxygen/html/classmfem_1_1ParLinearForm.html)
|
||||
+ [`HypreParMatrix`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreParMatrix.html) and [`HypreParVector`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreParVector.html)
|
||||
+ [`HypreSolver`](http://mfem.github.io/doxygen/html/classmfem_1_1HypreSolver.html) and other [hypre classes](http://mfem.github.io/doxygen/html/hypre_8hpp.html)
|
||||
|
||||
- GPU and multi-core CPU support is based on device kernels supporting different
|
||||
backends (CUDA, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
|
||||
device/host memory manager.
|
||||
|
||||
- The main device-relevant classes and sources are:
|
||||
+ [`Device`](http://mfem.github.io/doxygen/html/device_8hpp.html)
|
||||
+ [`MemoryManager`](http://mfem.github.io/doxygen/html/mem_manager_8hpp.html)
|
||||
+ the [`MFEM_FORALL`](http://mfem.github.io/doxygen/html/forall_8hpp.html) macro
|
||||
+ the [`cuda.hpp`](http://mfem.github.io/doxygen/html/cuda_8hpp.html) and [`occa.hpp`](http://mfem.github.io/doxygen/html/occa_8hpp.html) files
|
||||
|
||||
- The `general/` directory contains C++ classes that serve as utilities for
|
||||
communication, error handling, arrays, (Boolean) tables, timing, etc.
|
||||
|
||||
- The `config/` directory contains build-related files, both for the plain
|
||||
Makefile and the CMake build options.
|
||||
|
||||
- The `doc/` directory contains configuration for the Doxygen code documentation
|
||||
that can either be build locally, or browsed online at
|
||||
http://mfem.github.io/doxygen/html/index.html.
|
||||
|
||||
- The `data/` directory contains a collection of small mesh files, that are used
|
||||
in the simple example codes and more fully-featured mini applications in the
|
||||
`examples/` and `miniapps/` directories.
|
||||
|
||||
- The `tests/` directory contains a unit test suite and will later contain more
|
||||
tests that run example codes.
|
||||
|
||||
- See also the [code overview](http://mfem.org/code-overview/) section on the
|
||||
MFEM website.
|
||||
|
||||
## GitHub Workflow
|
||||
|
||||
The GitHub organization, https://github.com/mfem, is the main developer hub for
|
||||
@@ -241,7 +122,7 @@ will allow us to reach you directly with project announcements.
|
||||
# Work on "feature-dev", add local commits
|
||||
# ...
|
||||
|
||||
# (One time only) push the branch to github and setup your local
|
||||
# One time only) push the branch to github and setup your local
|
||||
# branch to track the github branch (for "git pull"):
|
||||
git push -u origin feature-dev
|
||||
|
||||
@@ -334,9 +215,9 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Is this a new feature users need to be aware of? New or updated example or miniapp?
|
||||
- [ ] Does it make sense to create a new section in the `CHANGELOG` to group with other related features?
|
||||
- [ ] Update `INSTALL`:
|
||||
- [ ] Had a new optional library been added? (*Make sure the external library is licensed under LGPL, not GPL!*)
|
||||
- [ ] Has a new optional library been added? (*Make sure the external library is licensed under LGPL, not GPL!*)
|
||||
- [ ] Does `make` or `cmake` have a new target?
|
||||
- [ ] Did the requirements or the installation process change? *(rare)*
|
||||
- [ ] Did the requirements or the installation process change? *(rare)*.
|
||||
- [ ] Update `.gitignore`:
|
||||
- [ ] Check if `make distclean; git status` shows any files that are generated from the source but we don't want to track in the repository.
|
||||
- [ ] Add new patterns (just for the new files above) and re-run the above test.
|
||||
@@ -376,10 +257,10 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] If this is a major new feature, consider mentioning in the short summary inside `README` *(rare)*.
|
||||
- [ ] List major new classes in `doc/CodeDocumentation.dox` *(rare)*.
|
||||
- [ ] Update this checklist, if the new pull request affects it.
|
||||
- [ ] Run the unit tests and make sure they all pass `make unittest`.
|
||||
- [ ] (LLNL only) Clone the `tests` repository and run the following tests, see `mfem/tests/README.md`:
|
||||
- [ ] `compilers`
|
||||
- [ ] `memcheck`
|
||||
- [ ] `unit-test`
|
||||
- [ ] `documentation`
|
||||
- [ ] (LLNL only) After merging:
|
||||
- [ ] Regenerate `README.html` files from companion documentation pull requests.
|
||||
@@ -451,7 +332,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
- [ ] `CHANGELOG`
|
||||
- [ ] `makefile`
|
||||
- [ ] `CMakeLists.txt`
|
||||
- [ ] `doc/CodeDocumentation.conf.in`
|
||||
- [ ] `doc/CodeDocumentation.conf`
|
||||
- [ ] (LLNL only) Make sure all `README.html` files in the source repo are up to date.
|
||||
- [ ] Tag the repository:
|
||||
|
||||
@@ -490,6 +371,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
- `mfem:gh-next` -- Bleeding-edge development version, may be broken, use at
|
||||
your own risk.
|
||||
|
||||
|
||||
## Automated Testing
|
||||
|
||||
MFEM has several levels of automated testing running on GitHub, as well as on
|
||||
|
||||
@@ -13,38 +13,14 @@ of MFEM is a (modern) C++ compiler, such as g++. The parallel version of MFEM
|
||||
requires an MPI C++ compiler, as well as the following external libraries:
|
||||
|
||||
- hypre (a library of high-performance preconditioners)
|
||||
https://github.com/hypre-space/hypre
|
||||
http://www.llnl.gov/CASC/hypre
|
||||
|
||||
- METIS (a family of multilevel partitioning algorithms)
|
||||
http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
|
||||
|
||||
The hypre dependency can be downloaded as a tarball from GitHub or from the
|
||||
project webpage https://www.llnl.gov/casc/hypre. For example, the 2.16.0 release
|
||||
of hypre is available at
|
||||
|
||||
https://github.com/hypre-space/hypre/archive/v2.16.0.tar.gz
|
||||
|
||||
The METIS dependency can be disabled but that is not generally recommended, see
|
||||
the option MFEM_USE_METIS.
|
||||
|
||||
MFEM also includes support for devices such as GPUs, and programming models such
|
||||
as CUDA, OCCA, OpenMP and RAJA.
|
||||
|
||||
- Starting with version 4.0, MFEM requires a C++11 compiler
|
||||
|
||||
- CUDA support requires an NVIDIA GPU and an installation of the CUDA Toolkit
|
||||
https://developer.nvidia.com/cuda-toolkit
|
||||
|
||||
- OCCA support requires the OCCA library
|
||||
https://libocca.org
|
||||
|
||||
- OpenMP support requires a compiler implementing the OpenMP API
|
||||
https://www.openmp.org
|
||||
|
||||
- RAJA support requires installation of the RAJA performance portability layer
|
||||
with (optionally) support for CUDA and OpenMP
|
||||
https://github.com/LLNL/RAJA
|
||||
|
||||
The library supports two build systems: one based on GNU make, and a second one
|
||||
based on CMake. Both build systems are described below. Some hints for building
|
||||
without GNU make or CMake can be found at the end of this file.
|
||||
@@ -54,11 +30,8 @@ following package managers:
|
||||
|
||||
- Spack, https://github.com/spack/spack
|
||||
- OpenHPC, http://openhpc.community
|
||||
- Homebrew/Science, https://github.com/Homebrew/homebrew-science (deprecated)
|
||||
- Homebrew/Science, https://github.com/Homebrew/homebrew-science
|
||||
|
||||
We also recommend downloading and building the MFEM-based GLVis visualization
|
||||
tool which can be used to visualize the meshes and solution in MFEM's examples
|
||||
and miniapps. See http://glvis.org and http://mfem.org/building.
|
||||
|
||||
Quick start with GNU make
|
||||
=========================
|
||||
@@ -66,15 +39,11 @@ Serial build:
|
||||
make serial -j 4
|
||||
|
||||
Parallel build:
|
||||
(download hypre and METIS 4 from above URLs)
|
||||
(download hypre 2.10.0b and METIS 4 from above URLs)
|
||||
(build METIS 4 in ../metis-4.0 relative to mfem/)
|
||||
(build hypre in ../hypre relative to mfem/)
|
||||
(build hypre 2.10.0b in ../hypre-2.10.0b relative to mfem/)
|
||||
make parallel -j 4
|
||||
|
||||
CUDA build:
|
||||
make cuda -j 4
|
||||
(build for a specific compute capability: 'make cuda -j 4 CUDA_ARCH=sm_30')
|
||||
|
||||
Example codes (serial/parallel, depending on the build):
|
||||
cd examples
|
||||
make -j 4
|
||||
@@ -85,6 +54,7 @@ Build everything (library, examples and miniapps) with current configuration:
|
||||
Quick-check the build by running Example 1/1p (optional):
|
||||
make check
|
||||
|
||||
|
||||
Quick start with CMake
|
||||
======================
|
||||
Serial build:
|
||||
@@ -93,19 +63,13 @@ Serial build:
|
||||
make -j 4 (assuming "UNIX Makefiles" generator)
|
||||
|
||||
Parallel build:
|
||||
(download hypre and METIS 4 from above URLs)
|
||||
(download hypre 2.10.0b and METIS 4 from above URLs)
|
||||
(build METIS 4 in ../metis-4.0 relative to mfem/)
|
||||
(build hypre in ../hypre relative to mfem/)
|
||||
(build hypre 2.10.0b in ../hypre-2.10.0b relative to mfem/)
|
||||
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
|
||||
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES
|
||||
make -j 4
|
||||
|
||||
CUDA build:
|
||||
(this build requires CMake 3.8 or newer)
|
||||
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
|
||||
cmake <mfem-source-dir> -DMFEM_USE_CUDA=YES
|
||||
make -j 4
|
||||
|
||||
Example codes (serial/parallel, depending on the build):
|
||||
make examples -j 4
|
||||
|
||||
@@ -165,10 +129,6 @@ are also defined:
|
||||
make parallel -> Builds parallel optimized version of the library
|
||||
make debug -> Builds serial debug version of the library
|
||||
make pdebug -> Builds parallel debug version of the library
|
||||
make cuda -> Builds serial cuda optimized version of the library
|
||||
make pcuda -> Builds parallel cuda optimized version of the library
|
||||
make cudebug -> Builds serial cuda debug version of the library
|
||||
make pcudebug -> Builds parallel cuda debug version of the library
|
||||
|
||||
Note that any of the above shortcuts accept configuration options, either at the
|
||||
command line or through a user configuration file.
|
||||
@@ -230,9 +190,8 @@ Configuration options (GNU make)
|
||||
See the configuration file config/defaults.mk for the default settings.
|
||||
|
||||
Compilers:
|
||||
CXX - C++ compiler, serial build
|
||||
MPICXX - MPI C++ compiler, parallel build
|
||||
CUDA_CXX - The CUDA compiler, 'nvcc'
|
||||
CXX - C++ compiler, serial build
|
||||
MPICXX - MPI C++ compiler, parallel build
|
||||
|
||||
Compiler options:
|
||||
OPTIM_FLAGS - Options for optimized build
|
||||
@@ -268,7 +227,7 @@ MFEM_DEBUG = YES/NO
|
||||
and consistency checks that may simplify bug-hunting.
|
||||
|
||||
MFEM_USE_EXCEPTIONS = YES/NO
|
||||
Enable the use of exceptions. In particular, modifies the default behavior
|
||||
Enable the use of exceptions. In particular, modifies the default bahavior
|
||||
when errors are encountered: throw an exception, instead of aborting.
|
||||
|
||||
MFEM_USE_LIBUNWIND = YES/NO
|
||||
@@ -288,12 +247,8 @@ MFEM_THREAD_SAFE = YES/NO
|
||||
Use thread-safe implementation for some classes/methods. This comes at the
|
||||
cost of extra memory allocation and de-allocation.
|
||||
|
||||
MFEM_USE_LEGACY_OPENMP = YES/NO
|
||||
Enable (basic) experimental OpenMP support. Requires MFEM_THREAD_SAFE.
|
||||
This option is deprecated.
|
||||
|
||||
MFEM_USE_OPENMP = YES/NO
|
||||
Enable the OpenMP backend.
|
||||
Enable (basic) experimental OpenMP support. Requires MFEM_THREAD_SAFE.
|
||||
|
||||
MFEM_USE_MEMALLOC = YES/NO
|
||||
Internal MFEM option: enable batch allocation for some small objects.
|
||||
@@ -397,39 +352,6 @@ MFEM_USE_GZSTREAM = YES/NO
|
||||
before attempting to use it with MFEM.
|
||||
When enabled, this option uses the ZLIB_* library options, see below.
|
||||
|
||||
MFEM_USE_PUMI = YES/NO
|
||||
Enable the usage of PUMI (https://scorec.rpi.edu/pumi/) in MFEM. The Parallel
|
||||
Unstructured Mesh Infrastructure (PUMI) is an unstructured, distributed mesh
|
||||
data management system that is capable of handling general non-manifold
|
||||
models and effectively supports automated adaptive analysis. PUMI enables
|
||||
support for parallel unstructured mesh modifications in MFEM.
|
||||
|
||||
MFEM_USE_MM = YES/NO
|
||||
Enables support for the MFEM's memory manager (MM), which is required to
|
||||
support devices with different memory spaces. This option is required when
|
||||
CUDA support is enabled, i.e. when MFEM_USE_CUDA=YES.
|
||||
|
||||
MFEM_USE_CUDA = YES/NO
|
||||
Enables support for CUDA devices in MFEM. CUDA is a parallel computing
|
||||
platform and programming model for general computing on graphical processing
|
||||
units (GPUs). This option requires MFEM_USE_MM. The variable CUDA_ARCH is
|
||||
used to specify the CUDA compute capability used during compilation (by
|
||||
default, CUDA_ARCH=sm_60). When enabled, this option uses the CUDA_* build
|
||||
options, see below.
|
||||
|
||||
MFEM_USE_RAJA = YES/NO
|
||||
Enable support for the RAJA performance portability layer in MFEM. RAJA
|
||||
provides a portable abstraction for loops, supporting different programming
|
||||
model backends. When using RAJA built with CUDA support, CUDA support must be
|
||||
also enabled in MFEM, i.e. MFEM_USE_CUDA=YES must be set.
|
||||
|
||||
MFEM_USE_OCCA = YES/NO
|
||||
Enables support for the OCCA library in MFEM. OCCA is an open-source library
|
||||
which aims to make it easy to program different types of devices (e.g. CPU,
|
||||
GPU, FPGA) by providing an unified API for interacting with JIT-compiled
|
||||
backends. In order to use the OCCA CUDA backend, CUDA support must be enabled
|
||||
in MFEM as well, i.e. MFEM_USE_CUDA=YES must be set.
|
||||
|
||||
MFEM_BUILD_TAG = (any value)
|
||||
An optional tag to characterize the build. Exported to config/config.mk.
|
||||
Can be used to identify the MFEM build from other makefiles.
|
||||
@@ -451,7 +373,7 @@ directory and use the string @MFEM_DIR@, e.g. HYPRE_OPT = -I@MFEM_DIR@/../hypre.
|
||||
The specific libraries and their options are:
|
||||
|
||||
- HYPRE, required for the parallel build, i.e. when MFEM_USE_MPI = YES.
|
||||
URL: https://github.com/hypre-space/hypre and https://www.llnl.gov/casc/hypre
|
||||
URL: http://www.llnl.gov/CASC/hypre
|
||||
Options: HYPRE_OPT, HYPRE_LIB.
|
||||
|
||||
- METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
|
||||
@@ -465,8 +387,7 @@ The specific libraries and their options are:
|
||||
http://math-atlas.sourceforge.net (ATLAS)
|
||||
Options: LAPACK_OPT (currently not used/needed), LAPACK_LIB.
|
||||
|
||||
- OpenMP (optional), usually part of compiler, used when either MFEM_USE_OPENMP
|
||||
or MFEM_USE_LEGACY_OPENMP is set to YES.
|
||||
- OpenMP (optional), usually part of compiler, used when MFEM_USE_OPENMP = YES.
|
||||
Options: OPENMP_OPT, OPENMP_LIB.
|
||||
|
||||
- High-resolution POSIX clocks: when using MFEM_TIMER_TYPE = 2, it may be
|
||||
@@ -498,8 +419,7 @@ The specific libraries and their options are:
|
||||
|
||||
- STRUMPACK (optional), used when MFEM_USE_STRUMPACK = YES. Note that STRUMPACK
|
||||
requires the PT-Scotch and Scalapack libraries as well as ParMETIS, which
|
||||
includes METIS 5 in its distribution. Starting with STRUMPACK v2.2.0, ParMETIS
|
||||
and PT-Scotch are optional dependencies.
|
||||
includes METIS 5 in its distribution.
|
||||
The support for STRUMPACK was added in MFEM v3.3.2 and it requires STRUMPACK
|
||||
2.0.0 or later.
|
||||
URL: http://portal.nersc.gov/project/sparse/strumpack
|
||||
@@ -541,22 +461,6 @@ The specific libraries and their options are:
|
||||
https://support.hdfgroup.org/HDF5 (HDF5)
|
||||
Options: CONDUIT_OPT, CONDUIT_LIB.
|
||||
|
||||
- PUMI, used when MFEM_USE_PUMI = YES.
|
||||
URL: https://scorec.rpi.edu/pumi
|
||||
Options: PUMI_OPT, PUMI_LIB.
|
||||
|
||||
- CUDA, used when MFEM_USE_CUDA = YES.
|
||||
URL: https://developer.nvidia.com/cuda-toolkit
|
||||
Options: CUDA_CXX, CUDA_ARCH, CUDA_OPT, CUDA_LIB.
|
||||
|
||||
- OCCA, used when MFEM_USE_OCCA = YES.
|
||||
URL: https://libocca.org
|
||||
Options: OCCA_DIR, OCCA_OPT, OCCA_LIB.
|
||||
|
||||
- RAJA, used when MFEM_USE_RAJA = YES.
|
||||
URL: https://github.com/LLNL/RAJA
|
||||
Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
|
||||
|
||||
- MPFR (optional), used when MFEM_USE_MPFR = YES.
|
||||
URL: http://mpfr.org, it depends on the GMP library: https://gmplib.org
|
||||
Options: MPFR_OPT, MPFR_LIB.
|
||||
@@ -661,8 +565,6 @@ Configuration variables (CMake)
|
||||
===============================
|
||||
See the configuration file config/defaults.cmake for the default settings.
|
||||
|
||||
Note: the option MFEM_USE_CUDA requires CMake version 3.8 or newer!
|
||||
|
||||
Non-standard CMake variables for compilers:
|
||||
CXX - If set, overwrite the auto-detected C++ compiler, serial build
|
||||
MPICXX - If set, overwrite the auto-detected MPI C++ compiler, parallel build
|
||||
@@ -680,7 +582,6 @@ MFEM_USE_METIS - Set to ${MFEM_USE_MPI}, can be overwritten.
|
||||
MFEM_USE_LIBUNWIND
|
||||
MFEM_USE_LAPACK
|
||||
MFEM_THREAD_SAFE
|
||||
MFEM_USE_LEGACY_OPENMP
|
||||
MFEM_USE_OPENMP
|
||||
MFEM_USE_MEMALLOC
|
||||
MFEM_TIMER_TYPE - Set automatically, can be overwritten.
|
||||
@@ -692,11 +593,6 @@ MFEM_USE_GNUTLS
|
||||
MFEM_USE_NETCDF
|
||||
MFEM_USE_MPFR
|
||||
MFEM_USE_GZSTREAM
|
||||
MFEM_USE_PUMI
|
||||
MFEM_USE_CUDA
|
||||
MFEM_USE_OCCA
|
||||
MFEM_USE_RAJA
|
||||
MFEM_USE_MM
|
||||
|
||||
The following options are CMake specific:
|
||||
|
||||
@@ -742,9 +638,6 @@ The CMake build system adds auto-detection for the following packages/libraries:
|
||||
- MPFR
|
||||
- LIBUNWIND
|
||||
- POSIXCLOCKS
|
||||
- PUMI
|
||||
- OCCA
|
||||
- RAJA
|
||||
|
||||
The following built-in CMake packages are also used:
|
||||
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
GNU LESSER GENERAL PUBLIC LICENSE
|
||||
Version 2.1, February 1999
|
||||
GNU LESSER GENERAL PUBLIC LICENSE
|
||||
Version 2.1, February 1999
|
||||
|
||||
Copyright (C) 1991, 1999 Free Software Foundation, Inc.
|
||||
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
|
||||
@@ -10,7 +10,7 @@
|
||||
as the successor of the GNU Library Public License, version 2, hence
|
||||
the version number 2.1.]
|
||||
|
||||
Preamble
|
||||
Preamble
|
||||
|
||||
The licenses for most software are designed to take away your
|
||||
freedom to share and change it. By contrast, the GNU General Public
|
||||
@@ -112,7 +112,7 @@ modification follow. Pay close attention to the difference between a
|
||||
former contains code derived from the library, whereas the latter must
|
||||
be combined with the library in order to run.
|
||||
|
||||
GNU LESSER GENERAL PUBLIC LICENSE
|
||||
GNU LESSER GENERAL PUBLIC LICENSE
|
||||
TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
|
||||
|
||||
0. This License Agreement applies to any software library or other
|
||||
@@ -146,7 +146,7 @@ such a program is covered only if its contents constitute a work based
|
||||
on the Library (independent of the use of the Library in a tool for
|
||||
writing it). Whether that is true depends on what the Library does
|
||||
and what the program that uses the Library does.
|
||||
|
||||
|
||||
1. You may copy and distribute verbatim copies of the Library's
|
||||
complete source code as you receive it, in any medium, provided that
|
||||
you conspicuously and appropriately publish on each copy an
|
||||
@@ -432,7 +432,7 @@ decision will be guided by the two goals of preserving the free status
|
||||
of all derivatives of our free software and of promoting the sharing
|
||||
and reuse of software generally.
|
||||
|
||||
NO WARRANTY
|
||||
NO WARRANTY
|
||||
|
||||
15. BECAUSE THE LIBRARY IS LICENSED FREE OF CHARGE, THERE IS NO
|
||||
WARRANTY FOR THE LIBRARY, TO THE EXTENT PERMITTED BY APPLICABLE LAW.
|
||||
@@ -455,7 +455,7 @@ FAILURE OF THE LIBRARY TO OPERATE WITH ANY OTHER SOFTWARE), EVEN IF
|
||||
SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH
|
||||
DAMAGES.
|
||||
|
||||
END OF TERMS AND CONDITIONS
|
||||
END OF TERMS AND CONDITIONS
|
||||
|
||||
How to Apply These Terms to Your New Libraries
|
||||
|
||||
@@ -485,8 +485,7 @@ convey the exclusion of warranty; and each file should have at least the
|
||||
|
||||
You should have received a copy of the GNU Lesser General Public
|
||||
License along with this library; if not, write to the Free Software
|
||||
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301
|
||||
USA
|
||||
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
|
||||
|
||||
Also add information on how to contact you by electronic and paper mail.
|
||||
|
||||
@@ -495,10 +494,11 @@ school, if any, to sign a "copyright disclaimer" for the library, if
|
||||
necessary. Here is a sample; alter the names:
|
||||
|
||||
Yoyodyne, Inc., hereby disclaims all copyright interest in the
|
||||
library `Frob' (a library for tweaking knobs) written by James Random
|
||||
Hacker.
|
||||
library `Frob' (a library for tweaking knobs) written by James Random Hacker.
|
||||
|
||||
<signature of Ty Coon>, 1 April 1990
|
||||
Ty Coon, President of Vice
|
||||
|
||||
That's all there is to it!
|
||||
|
||||
|
||||
|
||||
@@ -8,19 +8,15 @@
|
||||
http://mfem.org
|
||||
|
||||
MFEM is a modular parallel C++ library for finite element methods. Its goal is
|
||||
to enable high-performance scalable finite element discretization research and
|
||||
application development on a wide variety of platforms, ranging from laptops to
|
||||
supercomputers.
|
||||
to enable the research and development of scalable finite element discretization
|
||||
and solver algorithms through general finite element abstractions, accurate and
|
||||
flexible visualization, and tight integration with the hypre library.
|
||||
|
||||
* For building instructions, see the file INSTALL, or type "make help".
|
||||
For building instructions, see the file INSTALL, or type "make help". Copyright
|
||||
information and licensing restrictions can be found in the file COPYRIGHT.
|
||||
|
||||
* Copyright and licensing information can be found in the file COPYRIGHT.
|
||||
|
||||
* The best starting point for new users interested in MFEM's features is the
|
||||
interactive documentation in examples/README.html.
|
||||
|
||||
* Developers interested in contributing to the library, should read the
|
||||
instructions and documentation in the CONTRIBUTING.md file.
|
||||
The best starting point for new users interested in MFEM's features is the
|
||||
interactive documentation in examples/README.html.
|
||||
|
||||
Conceptually, MFEM can be viewed as a finite element toolbox that provides the
|
||||
building blocks for developing finite element algorithms in a manner similar to
|
||||
@@ -39,30 +35,29 @@ conforming and non-conforming (AMR) adaptive refinement. Arbitrary element
|
||||
transformations, allowing for high-order mesh elements with curved boundaries,
|
||||
are also supported.
|
||||
|
||||
When used as a "finite element to linear algebra translator", MFEM can take a
|
||||
problem described in terms of finite element-type objects, and produce the
|
||||
corresponding linear algebra vectors and fully or partially assembled operators,
|
||||
e.g. in the form of global sparse matrices or matrix-free operators. The library
|
||||
includes simple smoothers and Krylov solvers, such as PCG, MINRES and GMRES, as
|
||||
well as support for sequential sparse direct solvers from the SuiteSparse
|
||||
MFEM is commonly used as a "finite element to linear algebra translator", since
|
||||
it can take a problem described in terms of finite element-type objects, and
|
||||
produce the corresponding linear algebra vectors and sparse matrices. In order
|
||||
to facilitate this, MFEM uses compressed sparse row (CSR) sparse matrix storage
|
||||
and includes simple smoothers and Krylov solvers, such as PCG, MINRES and GMRES,
|
||||
as well as support for sequential sparse direct solvers from the SuiteSparse
|
||||
library. Nonlinear solvers (the Newton method), eigensolvers (LOBPCG), and
|
||||
several explicit and implicit Runge-Kutta time integrators are also available.
|
||||
|
||||
MFEM supports MPI-based parallelism throughout the library, and can readily be
|
||||
used as a scalable unstructured finite element problem generator. As of version
|
||||
4.0, MFEM offers initial support for GPU acceleration, and programming models,
|
||||
such as CUDA, OCCA, RAJA and OpenMP. MFEM-based applications require minimal
|
||||
changes to switch from a serial to a high-performing MPI-parallel version of the
|
||||
code, where they can take advantage of the integrated linear solvers from the
|
||||
hypre library. Comprehensive support for other external packages, e.g. PETSc
|
||||
and SUNDIALS is also included, giving access to many additional linear and
|
||||
nonlinear solvers, preconditioners, time integrators, etc.
|
||||
used as a scalable unstructured finite element problem generator. MFEM-based
|
||||
applications require minimal changes to transition from a serial to a
|
||||
high-performing parallel version of the code, where they can take advantage of
|
||||
the integrated scalable linear solvers from the hypre library. Comprehensive
|
||||
support for other external packages, e.g. PETSc and SUNDIALS is also included,
|
||||
giving access to many additional linear and nonlinear solvers, preconditioners,
|
||||
time integrators, etc.
|
||||
|
||||
For examples of using MFEM, see the examples/ and miniapps/ directories, as well
|
||||
as the OpenGL visualization tool GLVis which is available at http://glvis.org.
|
||||
|
||||
This project is released under the LGPL v2.1 license with static linking
|
||||
exception. See files COPYRIGHT and LICENSE file for full details.
|
||||
This project is released under the LGPL v2.1 license. See LICENSE file for full
|
||||
details.
|
||||
|
||||
LLNL Release Number: LLNL-CODE-443211
|
||||
DOI: 10.11578/dc.20171025.1248
|
||||
|
||||
@@ -9,5 +9,23 @@
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#define CATCH_CONFIG_MAIN // This tells Catch to provide a main() - only do this in one cpp file
|
||||
#include "catch.hpp"
|
||||
#ifndef MFEM_BACKENDS_ALL_HPP
|
||||
#define MFEM_BACKENDS_ALL_HPP
|
||||
|
||||
#include "../config/config.hpp"
|
||||
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "base/backend.hpp"
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
#include "occa/backend.hpp"
|
||||
#endif
|
||||
|
||||
#ifdef MFEM_USE_OMP
|
||||
#include "omp/backend.hpp"
|
||||
#endif
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_ALL_HPP
|
||||
@@ -0,0 +1,215 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_ARRAY_HPP
|
||||
#define MFEM_BACKENDS_BASE_ARRAY_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "layout.hpp"
|
||||
#include "utils.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Extension to the template class Array<T>
|
||||
class PArray : public RefCounted
|
||||
{
|
||||
protected:
|
||||
/// Layout with shared ownership (smart pointer)
|
||||
DLayout layout;
|
||||
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
virtual void *DoGetData() const = 0;
|
||||
|
||||
/** @brief Create and return a new array (in @a *clone) of the same dynamic
|
||||
type as this array using the same layout and ItemSize().
|
||||
|
||||
Set @a *clone to NULL if allocation fails.
|
||||
|
||||
If @a copy_data is true, the contents of this array is copied to the new
|
||||
array; otherwise, the new array remains uninitialized.
|
||||
|
||||
If @a buffer is not NULL, return the array data of the newly created
|
||||
object (in @a *buffer) , if it is stored as a contiguous array on the
|
||||
host; otherwise, set @a *buffer to NULL. */
|
||||
virtual PArray *DoClone(bool copy_data, void **buffer,
|
||||
std::size_t item_size) const = 0;
|
||||
|
||||
/// Resize the array, reallocating its data if necessary.
|
||||
/** If @a buffer is not NULL, return the array data (in @a *buffer), if it
|
||||
is stored as a contiguous array on the host; otherwise, set @a *buffer to
|
||||
NULL. Returns 0 on success and non-zero otherwise, e.g. if memory
|
||||
allocation fails.
|
||||
|
||||
If the @a new_layout is not supported, a non-zero error code will be
|
||||
returned.
|
||||
|
||||
The @a new_layout has to be valid, i.e. new_layout != NULL and
|
||||
new_layout->HasEngine() == true.
|
||||
|
||||
@note If reallocation is performed, the previous content of the array is
|
||||
NOT copied to the new location. */
|
||||
virtual int DoResize(PLayout &new_layout, void **buffer,
|
||||
std::size_t item_size) = 0;
|
||||
|
||||
/** @brief Get access to the contents of the array in host memory, as a
|
||||
contiguous array. */
|
||||
/** If the array data is stored as a contiguous array in host memory, return
|
||||
a pointer to it. Otherwise, copy the data to @a buffer (if @a buffer is
|
||||
not NULL) and return @a buffer.
|
||||
@note If not NULL, @a buffer is assumed to be of size greater than or
|
||||
equal to Size(). */
|
||||
virtual void *DoPullData(void *buffer, std::size_t item_size) = 0;
|
||||
|
||||
/** @brief Set all entries of the array to the (single) value pointed to by
|
||||
@a value_ptr. */
|
||||
virtual void DoFill(const void *value_ptr, std::size_t item_size) = 0;
|
||||
|
||||
/** @brief Set all Size() entries of the array from the given contiguous
|
||||
array, @a src_buffer, on the host. */
|
||||
virtual void DoPushData(const void *src_buffer, std::size_t item_size) = 0;
|
||||
|
||||
/// Copy the data from @a src to @a *this.
|
||||
/** Both arrays must have the same dynamic type, layout, and item_size. */
|
||||
virtual void DoAssign(const PArray &src, std::size_t item_size) = 0;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
|
||||
public:
|
||||
/** @brief The @a layout parameter will be reference counted and therefore it
|
||||
should be dynamically allocated. */
|
||||
/** The @a layout must be valid in the sense that layout != NULL and
|
||||
layout->HasEngine() == true. */
|
||||
PArray(PLayout &p_layout)
|
||||
: layout(&p_layout)
|
||||
{
|
||||
MFEM_ASSERT(layout && layout->HasEngine(), "invalid layout");
|
||||
}
|
||||
|
||||
virtual ~PArray() { }
|
||||
|
||||
/// Get the current size of the array.
|
||||
std::size_t Size() const { return layout->Size(); }
|
||||
|
||||
/// Get the current layout of the array.
|
||||
PLayout &GetLayout() const { return *layout; }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
derived_t &As() { return dynamic_cast<derived_t&>(*this); }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { return dynamic_cast<const derived_t&>(*this); }
|
||||
|
||||
// TODO: Error handling ... handle errors at the Engine level, at the class
|
||||
// level, or at the method level?
|
||||
|
||||
// TODO: Asynchronous execution interface ...
|
||||
|
||||
|
||||
/**
|
||||
@name Public virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
template <typename T=void>
|
||||
T* GetData() const { return (T*) DoGetData(); }
|
||||
|
||||
/** @brief Create and return a new array (in @a *clone) of the same dynamic
|
||||
type as this array using the same layout and ItemSize().
|
||||
|
||||
Set @a *clone to NULL if allocation fails.
|
||||
|
||||
If @a copy_data is true, the contents of this array is copied to the new
|
||||
array; otherwise, the new array remains uninitialized.
|
||||
|
||||
If @a buffer is not NULL, return the array data of the newly created
|
||||
object (in @a *buffer) , if it is stored as a contiguous array on the
|
||||
host; otherwise, set @a *buffer to NULL. */
|
||||
template <typename T>
|
||||
DArray Clone(bool copy_data, T **buffer) const
|
||||
{ return DArray(DoClone(copy_data, (void**)buffer, sizeof(T))); }
|
||||
|
||||
/// Resize the array, reallocating its data if necessary.
|
||||
/** If @a buffer is not NULL, return the array data (in @a *buffer), if it
|
||||
is stored as a contiguous array on the host; otherwise, set @a *buffer to
|
||||
NULL. Returns 0 on success and non-zero otherwise, e.g. if memory
|
||||
allocation fails.
|
||||
|
||||
If the @a new_layout is not supported, a non-zero error code will be
|
||||
returned.
|
||||
|
||||
The @a new_layout has to be valid, i.e. new_layout != NULL and
|
||||
new_layout->HasEngine() == true.
|
||||
|
||||
@note If reallocation is performed, the previous content of the array is
|
||||
NOT copied to the new location. */
|
||||
template <typename T>
|
||||
int Resize(PLayout &new_layout, T **buffer)
|
||||
{ return DoResize(new_layout, (void**)buffer, sizeof(T)); }
|
||||
|
||||
/// Shortcut for Resize(*layout, buffer).
|
||||
/** This method is useful for updating the array after its layout is changed
|
||||
externally. */
|
||||
template <typename T>
|
||||
int Update(T **buffer)
|
||||
{ return DoResize(*layout, (void**)buffer, sizeof(T)); }
|
||||
|
||||
/// Shortcut for layout->Resize(new_size) followed by Update()
|
||||
template <typename T>
|
||||
int Resize(std::size_t new_size, T **buffer)
|
||||
{ layout->Resize(new_size); return Update(buffer); }
|
||||
|
||||
/** @brief Get access to the contents of the array in host memory, as a
|
||||
contiguous array. */
|
||||
/** If the array data is stored as a contiguous array in host memory, return
|
||||
a pointer to it. Otherwise, copy the data to @a buffer (if @a buffer is
|
||||
not NULL) and return @a buffer.
|
||||
@note If not NULL, @a buffer is assumed to be of size greater than or
|
||||
equal to Size(). */
|
||||
template <typename T>
|
||||
T *PullData(T *buffer)
|
||||
{ return Size() ? (T*)DoPullData((void*)buffer, sizeof(T)) : NULL; }
|
||||
|
||||
/** @brief Set all entries of the array to the (single) value pointed to by
|
||||
@a value_ptr. */
|
||||
template <typename T>
|
||||
void Fill(const T &value) { if (Size()) { DoFill(&value, sizeof(T)); } }
|
||||
|
||||
/** @brief Set all Size() entries of the array from the given contiguous
|
||||
array, @a src_buffer, on the host. */
|
||||
template <typename T>
|
||||
void PushData(const T *src_buffer)
|
||||
{ if (Size()) { DoPushData(src_buffer, sizeof(T)); } }
|
||||
|
||||
/// Copy the data from @a src to @a *this.
|
||||
/** Both arrays must have the same dynamic type, layout, and entry type. */
|
||||
template <typename T>
|
||||
void Assign(const PArray &src) { if (Size()) { DoAssign(src, sizeof(T)); } }
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_ARRAY_HPP
|
||||
@@ -0,0 +1,57 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_BACKEND_HPP
|
||||
#define MFEM_BACKENDS_BASE_BACKEND_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "memory_resource.hpp"
|
||||
#include "engine.hpp"
|
||||
#include "array.hpp"
|
||||
#include "vector.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
|
||||
#include <string>
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
#include <mpi.h>
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// TODO
|
||||
class Backend
|
||||
{
|
||||
public:
|
||||
/// TODO
|
||||
virtual ~Backend() { }
|
||||
|
||||
/// TODO
|
||||
virtual bool Supports(const std::string &engine_spec) const = 0;
|
||||
|
||||
/// TODO
|
||||
virtual Engine *Create(const std::string &engine_spec) = 0;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
/// TODO
|
||||
virtual Engine *Create(MPI_Comm comm, const std::string &engine_spec) = 0;
|
||||
#endif
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_BACKEND_HPP
|
||||
@@ -0,0 +1,72 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_BILINEARFORM_HPP
|
||||
#define MFEM_BACKENDS_BASE_BILINEARFORM_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class Vector;
|
||||
class OperatorHandle;
|
||||
class BilinearForm;
|
||||
|
||||
/// TODO: doxygen
|
||||
class PBilinearForm : public RefCounted
|
||||
{
|
||||
protected:
|
||||
/// Engine with shared ownership
|
||||
SharedPtr<const Engine> engine;
|
||||
/// Not owned.
|
||||
BilinearForm *bform;
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
PBilinearForm(const Engine &e, BilinearForm &bf)
|
||||
: engine(&e), bform(&bf) { }
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~PBilinearForm() { }
|
||||
|
||||
/// Get the associated Engine
|
||||
const Engine &GetEngine() const { return *engine; }
|
||||
|
||||
/// Assemble the PBilinearForm.
|
||||
/** This method is called from the method BilinearForm::Assemble() of the
|
||||
associated BilinearForm #bform.
|
||||
@returns True, if the host assembly should be skipped. */
|
||||
virtual bool Assemble() = 0;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual void FormSystemMatrix(const Array<int> &ess_tdof_list,
|
||||
OperatorHandle &A) = 0;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual void FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
Vector &x, Vector &b,
|
||||
OperatorHandle &A, Vector &X, Vector &B,
|
||||
int copy_interior) = 0;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual void RecoverFEMSolution(const Vector &X, const Vector &b,
|
||||
Vector &x) = 0;
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_BILINEARFORM_HPP
|
||||
@@ -0,0 +1,29 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "engine.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
DFiniteElementSpace Engine::MakeFESpace(FiniteElementSpace &fes) const
|
||||
{
|
||||
return DFiniteElementSpace(new PFiniteElementSpace(*this, fes));
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
@@ -0,0 +1,210 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_ENGINE_HPP
|
||||
#define MFEM_BACKENDS_BASE_ENGINE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "../../general/scalars.hpp"
|
||||
#include "memory_resource.hpp"
|
||||
#include "smart_pointers.hpp"
|
||||
#include "utils.hpp"
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
#include <mpi.h>
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// Forward declarations.
|
||||
class Backend;
|
||||
template <typename T> class Array;
|
||||
class Vector;
|
||||
class Operator;
|
||||
class FiniteElementSpace;
|
||||
class LinearForm;
|
||||
class BilinearForm;
|
||||
class MixedBilinearForm;
|
||||
class NonlinearForm;
|
||||
|
||||
|
||||
/// In parallel, each MPI rank will usually create a single engine.
|
||||
class Engine : public RefCounted
|
||||
{
|
||||
protected:
|
||||
Backend *backend; ///< Backend that created the engine. Not owned.
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
MPI_Comm comm; ///< Associated MPI communicator (may be MPI_COMM_NULL).
|
||||
#endif
|
||||
|
||||
/// Number of memory resources used by the Engine.
|
||||
int num_mem_res;
|
||||
/// Number of workers used by the Engine.
|
||||
int num_workers;
|
||||
|
||||
/// Memory resources used by the engine - array of pointers.
|
||||
/** Both the array and the entries are owned. */
|
||||
MemoryResource **memory_resources;
|
||||
|
||||
/// Relative computational speed of the workers. Owned.
|
||||
double *workers_weights;
|
||||
|
||||
/// For each worker, which memory resource it uses.
|
||||
int *workers_mem_res;
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
Engine(Backend *b, int n_mem, int n_workers)
|
||||
: backend(b),
|
||||
#ifdef MFEM_USE_MPI
|
||||
comm(MPI_COMM_NULL),
|
||||
#endif
|
||||
num_mem_res(n_mem),
|
||||
num_workers(n_workers),
|
||||
memory_resources(new MemoryResource*[num_mem_res]()),
|
||||
workers_weights(new double[num_workers]()),
|
||||
workers_mem_res(new int[num_workers]())
|
||||
{ /* Note: all arrays are value-initialized with zeros. */ }
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual ~Engine()
|
||||
{
|
||||
delete [] workers_mem_res;
|
||||
delete [] workers_weights;
|
||||
for (int i = 0; i < num_mem_res; i++)
|
||||
{
|
||||
delete memory_resources[i];
|
||||
}
|
||||
delete [] memory_resources;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
@name Machine resources interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
/// Get the associated MPI_Comm
|
||||
MPI_Comm GetComm() const { return comm; }
|
||||
#endif
|
||||
|
||||
/// TODO
|
||||
int GetNumMemRes() const { return num_mem_res; }
|
||||
|
||||
/// TODO
|
||||
MemoryResource &GetMemRes(int idx) const { return *memory_resources[idx]; }
|
||||
|
||||
/// TODO
|
||||
int GetNumWorkers() const { return num_workers; }
|
||||
|
||||
/// TODO
|
||||
const double *GetWorkersWeights() const { return workers_weights; }
|
||||
|
||||
/// TODO
|
||||
const int *GetWorkersMemRes() const { return workers_mem_res; }
|
||||
|
||||
///@}
|
||||
// End: Machine resources interface
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
derived_t &As() { *util::As<derived_t>(this); }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { *util::As<const derived_t>(this); }
|
||||
|
||||
|
||||
// TODO: Error handling ... handle errors at the Engine level, at the class
|
||||
// level, or at the method level?
|
||||
|
||||
|
||||
/**
|
||||
@name Virtual interface: finite element data structures and algorithms
|
||||
*/
|
||||
///@{
|
||||
|
||||
// TODO: Asynchronous execution in this class ...
|
||||
|
||||
/// Allocate and return a new layout for the given @a size.
|
||||
/** The layout decomposition is determined automatically by the Engine using
|
||||
a deterministic algorithm: calls to this method with the same @a size
|
||||
will produce the same result, as long as the Engine remains unmodified
|
||||
between the calls.
|
||||
|
||||
The returned object is allocated with operator new and must be
|
||||
deallocated by the caller.
|
||||
|
||||
TODO: Returns NULL if memory allocation fails?
|
||||
*/
|
||||
virtual DLayout MakeLayout(std::size_t size) const = 0;
|
||||
|
||||
/// Allocate and return a new layout for the given worker decomposition.
|
||||
/** The returned object is allocated with operator new and must be
|
||||
deallocated by the caller.
|
||||
|
||||
TODO: Returns NULL if memory allocation fails?
|
||||
|
||||
The @a offsets should satisfy: offsets.Size() == number of workers + 1,
|
||||
offsets[0] == 0, and offsets[i] <= offsets[i+1], for i: 0 <= i < number
|
||||
of workers. */
|
||||
virtual DLayout MakeLayout(const Array<std::size_t> &offsets) const = 0;
|
||||
|
||||
// Note: There may be other ways to construct layouts in the future, e.g.
|
||||
// block-vector layouts, or multi-vector layouts.
|
||||
|
||||
/// TODO
|
||||
virtual DArray MakeArray(PLayout &layout, std::size_t item_size) const = 0;
|
||||
|
||||
/// Allocate and return a new vector using the given @a layout.
|
||||
/** The returned object is a smart pointer that will automatically deallocate
|
||||
the vector.
|
||||
|
||||
TODO: Produce an error if memory allocation fails?
|
||||
|
||||
Only layouts returned by this Engine are guaranteed to be supported.
|
||||
Using a type that is not supported will produce an error. */
|
||||
virtual DVector MakeVector(PLayout &layout,
|
||||
int type_id = ScalarId<double>::value) const = 0;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual DFiniteElementSpace MakeFESpace(FiniteElementSpace &fes) const;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual DBilinearForm MakeBilinearForm(BilinearForm &bf) const = 0;
|
||||
|
||||
|
||||
// Question: How do we construct coefficients?
|
||||
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual void AssembleLinearForm(LinearForm &l_form) const = 0;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual Operator *MakeOperator(const MixedBilinearForm &mbl_form) const = 0;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual Operator *MakeOperator(const NonlinearForm &nl_form) const = 0;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_ENGINE_HPP
|
||||
@@ -0,0 +1,61 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_FE_SPACE_HPP
|
||||
#define MFEM_BACKENDS_BASE_FE_SPACE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "engine.hpp"
|
||||
#include "utils.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class FiniteElementSpace;
|
||||
|
||||
/// TODO: doxygen
|
||||
class PFiniteElementSpace : public RefCounted
|
||||
{
|
||||
protected:
|
||||
/// Engine with shared ownership
|
||||
SharedPtr<const Engine> engine;
|
||||
/// Not owned.
|
||||
FiniteElementSpace *fes;
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
PFiniteElementSpace(const Engine &e, FiniteElementSpace &fespace)
|
||||
: engine(&e), fes(&fespace) { }
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~PFiniteElementSpace() { }
|
||||
|
||||
/// Get the associated engine
|
||||
const Engine &GetEngine() const { return *engine; }
|
||||
|
||||
mfem::FiniteElementSpace* GetFESpace() const { return fes; }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
derived_t &As() { return *util::As<derived_t>(this); }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { return *util::As<const derived_t>(this); }
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_FE_SPACE_HPP
|
||||
@@ -0,0 +1,104 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_LAYOUT_HPP
|
||||
#define MFEM_BACKENDS_BASE_LAYOUT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "smart_pointers.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Polymorphic layout (array/vector layout descriptor)
|
||||
class PLayout : public RefCounted
|
||||
{
|
||||
protected:
|
||||
/// Engine with shared ownership
|
||||
SharedPtr<const Engine> engine;
|
||||
std::size_t size;
|
||||
|
||||
template <typename DObject>
|
||||
struct Maker
|
||||
{
|
||||
template <typename entry_t>
|
||||
static DObject MakeNew(PLayout &layout);
|
||||
};
|
||||
|
||||
public:
|
||||
explicit PLayout(std::size_t s = 0) : engine(NULL), size(s) { }
|
||||
|
||||
explicit PLayout(const Engine &e, std::size_t s = 0)
|
||||
: engine(&e), size(s) { }
|
||||
|
||||
virtual ~PLayout() { }
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/// Resize the layout
|
||||
virtual void Resize(std::size_t new_size) { size = new_size; }
|
||||
|
||||
/// Resize the layout based on the given worker offsets
|
||||
virtual void Resize(const Array<std::size_t> &offsets)
|
||||
{ MFEM_ABORT("method not supported"); }
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
|
||||
/// Layouts without engine cannot create DArray, DVector, etc.
|
||||
bool HasEngine() const { return engine != NULL; }
|
||||
|
||||
/// TODO: doxygen
|
||||
const Engine &GetEngine() const { return *engine; }
|
||||
|
||||
/// TODO: doxygen
|
||||
std::size_t Size() const { return size; }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
derived_t &As() { return *util::As<derived_t>(this); }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { return *util::As<const derived_t>(this); }
|
||||
|
||||
/// TODO: doxygen
|
||||
template <typename DObject, typename entry_t>
|
||||
DObject Make()
|
||||
{
|
||||
MFEM_ASSERT(HasEngine(), "this method requires an Engine");
|
||||
return Maker<DObject>::template MakeNew<entry_t>(*this);
|
||||
}
|
||||
};
|
||||
|
||||
template <> struct PLayout::Maker<DArray>
|
||||
{
|
||||
template <typename entry_t> static DArray MakeNew(PLayout &layout)
|
||||
{ return layout.GetEngine().MakeArray(layout, sizeof(entry_t)); }
|
||||
};
|
||||
|
||||
template <> struct PLayout::Maker<DVector>
|
||||
{
|
||||
template <typename entry_t> static DVector MakeNew(PLayout &layout)
|
||||
{ return layout.GetEngine().MakeVector(layout, ScalarId<entry_t>::value); }
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_LAYOUT_HPP
|
||||
@@ -0,0 +1,59 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "memory_resource.hpp"
|
||||
#include "../../general/error.hpp"
|
||||
|
||||
#include <cstdlib>
|
||||
#include <cstring>
|
||||
#include <cerrno>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
void *NewDeleteMemoryResource::DoAllocate(std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
void *p = ::operator new[](bytes);
|
||||
MFEM_VERIFY(!alignment || (std::size_t)(p) % alignment == 0,
|
||||
"invalid alignment");
|
||||
return p;
|
||||
}
|
||||
|
||||
void NewDeleteMemoryResource::DoDeallocate(void *p, std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
::operator delete[](p);
|
||||
}
|
||||
|
||||
|
||||
void *AlignedMemoryResource::DoAllocate(std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
void *p;
|
||||
if (!alignment) { alignment = sizeof(long double); }
|
||||
MFEM_VERIFY(posix_memalign(&p, alignment, bytes) == 0,
|
||||
"error in posix_memalign(): " << strerror(errno));
|
||||
return p;
|
||||
}
|
||||
|
||||
void AlignedMemoryResource::DoDeallocate(void *p, std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
free(p);
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
@@ -0,0 +1,70 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_MEMORY_RESOURCE_HPP
|
||||
#define MFEM_BACKENDS_BASE_MEMORY_RESOURCE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include <cstddef>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Polymorphic memory resource. Similar to C++17's std::pmr::memory_resource.
|
||||
class MemoryResource
|
||||
{
|
||||
protected:
|
||||
virtual void *DoAllocate(std::size_t bytes, std::size_t alignment) = 0;
|
||||
virtual void DoDeallocate(void* p, std::size_t bytes,
|
||||
std::size_t alignment) = 0;
|
||||
|
||||
public:
|
||||
// Implicitly defined default & copy constructors
|
||||
|
||||
/// Virtual destructor.
|
||||
virtual ~MemoryResource() { }
|
||||
|
||||
/// If alignment == 0, use default alignment.
|
||||
void *Allocate(std::size_t bytes, std::size_t alignment = 0)
|
||||
{ return DoAllocate(bytes, alignment); }
|
||||
|
||||
/// If alignment == 0, use default alignment.
|
||||
void Deallocate(void *p, std::size_t bytes, std::size_t alignment = 0)
|
||||
{ DoDeallocate(p, bytes, alignment); }
|
||||
};
|
||||
|
||||
|
||||
/** @brief Dynamic host memory resource using operator new[](std::size_t) for
|
||||
allocation and operator delete[](void*) for deallocation. */
|
||||
class NewDeleteMemoryResource : public MemoryResource
|
||||
{
|
||||
protected:
|
||||
virtual void *DoAllocate(std::size_t bytes, std::size_t alignment);
|
||||
virtual void DoDeallocate(void *p, std::size_t bytes, std::size_t alignment);
|
||||
};
|
||||
|
||||
|
||||
/** @brief Dynamic host memory resource using posix_memalign() for aligned
|
||||
allocation and free() for deallocation. */
|
||||
class AlignedMemoryResource : public MemoryResource
|
||||
{
|
||||
protected:
|
||||
virtual void *DoAllocate(std::size_t bytes, std::size_t alignment);
|
||||
virtual void DoDeallocate(void *p, std::size_t bytes, std::size_t alignment);
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_MEMORY_RESOURCE_HPP
|
||||
@@ -0,0 +1,233 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_SMART_POINTERS_HPP
|
||||
#define MFEM_BACKENDS_BASE_SMART_POINTERS_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "utils.hpp"
|
||||
#include "../../general/error.hpp"
|
||||
#include <cstddef>
|
||||
|
||||
// #define MFEM_TRACE_SHARED_PTR
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
#include "../../general/globals.hpp"
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Base class for classes with simple reference counting.
|
||||
/** Reference counting is performed by the class SharedPtr. */
|
||||
class RefCounted
|
||||
{
|
||||
private:
|
||||
mutable unsigned ref_count;
|
||||
|
||||
/// Only class SharedPtr can access ref_count.
|
||||
template <typename T> friend class SharedPtr;
|
||||
|
||||
public:
|
||||
RefCounted() : ref_count(0) { }
|
||||
|
||||
/** @brief Prevent SharedPtr objects from deleting this object by
|
||||
incrementing the reference counter by one. */
|
||||
void DontDelete() const { ++ref_count; }
|
||||
};
|
||||
|
||||
|
||||
/** @brief Smart pointer class that manages objects of type T derived from class
|
||||
RefCounted. */
|
||||
/** This class is generally meant to work with dynamically allocated object,
|
||||
specifically objects allocated with operator new(). It will invoke operator
|
||||
delete() to destroy the managed object when its reference counter reaches
|
||||
zero. This behavior can be overriden by calling RefCounted::DontDelete() to
|
||||
ensure that an object will not be deleted by a SharedPtr that holds a
|
||||
pointer to it.
|
||||
@note This class is NOT thread-safe and does not support circular ownership.
|
||||
*/
|
||||
template <typename T>
|
||||
class SharedPtr
|
||||
{
|
||||
public:
|
||||
typedef T stored_type;
|
||||
|
||||
private:
|
||||
T *ptr;
|
||||
|
||||
void Init(T *new_ptr)
|
||||
{
|
||||
ptr = new_ptr;
|
||||
if (ptr) { ++ptr->RefCounted::ref_count; }
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
#elif 0
|
||||
mfem::out << " [" << _MFEM_FUNC_NAME << "]: ptr = " << ptr;
|
||||
if (ptr)
|
||||
{
|
||||
mfem::out << ", new ref_count = " << ptr->RefCounted::ref_count;
|
||||
}
|
||||
mfem::out << '\n';
|
||||
#endif
|
||||
}
|
||||
void Destroy()
|
||||
{
|
||||
MFEM_ASSERT(!ptr || ptr->RefCounted::ref_count >= 1, "invalid use");
|
||||
if (ptr && --ptr->RefCounted::ref_count == 0) { delete ptr; }
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
#elif 0
|
||||
mfem::out << " [" << _MFEM_FUNC_NAME << "]: ptr = " << ptr;
|
||||
if (ptr)
|
||||
{
|
||||
mfem::out << ", new ref_count = " << ptr->RefCounted::ref_count;
|
||||
}
|
||||
mfem::out << '\n';
|
||||
#endif
|
||||
}
|
||||
|
||||
public:
|
||||
SharedPtr() : ptr(NULL)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]: ptr = " << ptr << '\n';
|
||||
#endif
|
||||
}
|
||||
|
||||
SharedPtr(const SharedPtr &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Init(other.ptr);
|
||||
}
|
||||
|
||||
template <typename U>
|
||||
SharedPtr(const SharedPtr<U> &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Init(other.Get());
|
||||
}
|
||||
|
||||
explicit SharedPtr(T *p)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Init(p);
|
||||
}
|
||||
|
||||
~SharedPtr()
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Destroy();
|
||||
}
|
||||
|
||||
SharedPtr &operator=(const SharedPtr &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Reset(other.ptr); return *this;
|
||||
}
|
||||
|
||||
template <typename U>
|
||||
SharedPtr &operator=(const SharedPtr<U> &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Reset(other.Get()); return *this;
|
||||
}
|
||||
|
||||
T &operator*() const { return *ptr; }
|
||||
T *operator->() const { return ptr; }
|
||||
|
||||
operator bool() const { return ptr; }
|
||||
bool operator!() const { return !ptr; }
|
||||
|
||||
template <typename U>
|
||||
bool operator==(const SharedPtr<U> &other) const
|
||||
{ return ptr == other.Ptr(); }
|
||||
template <typename U>
|
||||
bool operator!=(const SharedPtr<U> &other) const
|
||||
{ return ptr != other.Ptr(); }
|
||||
|
||||
template <typename U>
|
||||
bool operator==(const U &p) const { return ptr == (void*) p; }
|
||||
template <typename U>
|
||||
bool operator!=(const U &p) const { return ptr != (void*) p; }
|
||||
|
||||
T *Get() const { return ptr; }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
derived_t *As() const { return util::As<derived_t>(ptr); }
|
||||
|
||||
unsigned UseCount() const { return ptr ? ptr->RefCounted::ref_count : 0; }
|
||||
|
||||
void Reset()
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Destroy();
|
||||
ptr = NULL;
|
||||
}
|
||||
|
||||
/// The type U* needs to be implicitly convertible to T*
|
||||
template <typename U>
|
||||
void Reset(U *new_ptr)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
if (ptr != new_ptr) { Destroy(); Init(new_ptr); }
|
||||
}
|
||||
|
||||
void Swap(SharedPtr &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
std::swap(ptr, other.ptr);
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
template <class T>
|
||||
inline void Swap(SharedPtr<T> &a, SharedPtr<T> &b) { a.Swap(b); }
|
||||
|
||||
|
||||
class PLayout;
|
||||
typedef SharedPtr<PLayout> DLayout;
|
||||
|
||||
class PArray;
|
||||
typedef SharedPtr<PArray> DArray;
|
||||
|
||||
class PVector;
|
||||
typedef SharedPtr<PVector> DVector;
|
||||
|
||||
class PFiniteElementSpace;
|
||||
typedef SharedPtr<PFiniteElementSpace> DFiniteElementSpace;
|
||||
|
||||
class PBilinearForm;
|
||||
typedef SharedPtr<PBilinearForm> DBilinearForm;
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_SMART_POINTERS_HPP
|
||||
@@ -0,0 +1,52 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_UTILS_HPP
|
||||
#define MFEM_BACKENDS_BASE_UTILS_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "../../general/error.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace util
|
||||
{
|
||||
|
||||
//
|
||||
// Inline methods
|
||||
//
|
||||
|
||||
/// TODO: doxygen
|
||||
template <typename derived_t, typename base_t>
|
||||
inline derived_t *As(base_t *base_obj)
|
||||
{
|
||||
MFEM_ASSERT(dynamic_cast<derived_t*>(base_obj) != NULL,
|
||||
"invalid object type");
|
||||
return static_cast<derived_t*>(base_obj);
|
||||
}
|
||||
|
||||
/// TODO: doxygen
|
||||
template <typename derived_t, typename base_t>
|
||||
inline derived_t *Is(base_t *base_obj)
|
||||
{
|
||||
return dynamic_cast<derived_t*>(base_obj);
|
||||
}
|
||||
|
||||
} // namespace mfem::util
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_UTILS_HPP
|
||||
@@ -0,0 +1,153 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_VECTOR_HPP
|
||||
#define MFEM_BACKENDS_BASE_VECTOR_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "../../general/scalars.hpp"
|
||||
#include "array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Polymorphic vector - array of scalars.
|
||||
class PVector : virtual public PArray
|
||||
{
|
||||
protected:
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/** @brief Create and return a new vector of the same dynamic type as this
|
||||
vector using the same layout with entries specified by @a buffer_type_id
|
||||
which should be a constant defined by the `value` field in a
|
||||
specialization of the template class mfem::ScalarId.
|
||||
|
||||
Returns NULL if allocation fails.
|
||||
|
||||
If @a copy_data is true, the contents of this vector is copied to the new
|
||||
vector; otherwise, the new vector remains uninitialized.
|
||||
|
||||
If @a buffer is not NULL, return the vector data of the newly created
|
||||
object (in @a *buffer), if it is stored as a contiguous array on the
|
||||
host; otherwise, set @a *buffer to NULL. */
|
||||
virtual PVector *DoVectorClone(bool copy_data, void **buffer,
|
||||
int buffer_type_id) const = 0;
|
||||
|
||||
/** @brief Compute and return the dot product of @a *this and @a x. In the
|
||||
case of an MPI-parallel vector, the result must be the MPI-global dot
|
||||
product. */
|
||||
/** Both vectors must have the same dynamic type and layout. */
|
||||
virtual void DoDotProduct(const PVector &x, void *result,
|
||||
int result_type_id) const = 0;
|
||||
|
||||
// TODO: add reduction operations: min, max, sum
|
||||
|
||||
/// Perform the operation @a *this = @a a @a x + @a b @a y.
|
||||
/** Rules:
|
||||
- the dynamic type of both @a x and @a y is the same as that of @a *this
|
||||
- if @a a == 0, neither @a x nor its data are accessed
|
||||
- if @a b == 0, neither @a y nor its data are accessed
|
||||
- @a x's data is never the same as @a y's data, unless @a a == 0, or
|
||||
@a b == 0
|
||||
- @a x's data or @a y's data may be the same as the data of @a *this
|
||||
- all accessed vectors, @a x, @a y, and @a *this have the same layout. */
|
||||
virtual void DoAxpby(const void *a, const PVector &x,
|
||||
const void *b, const PVector &y,
|
||||
int ab_type_id) = 0;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
|
||||
public:
|
||||
/** @brief Create a PVector. */
|
||||
/** The @a layout must be valid in the sense that layout != NULL and
|
||||
layout->HasEngine() == true. */
|
||||
PVector(PLayout &p_layout)
|
||||
: PArray(p_layout) { }
|
||||
|
||||
template <typename derived_t>
|
||||
derived_t &As() { return *util::As<derived_t>(this); }
|
||||
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { return *util::As<const derived_t>(this); }
|
||||
|
||||
|
||||
// TODO: Error handling ... handle errors at the Engine level, at the class
|
||||
// level, or at the method level?
|
||||
|
||||
// TODO: Asynchronous execution interface ...
|
||||
|
||||
// TODO: Multi-vector interface ...
|
||||
|
||||
|
||||
/**
|
||||
@name Public virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/** @brief Create and return a new vector of the same dynamic type as this
|
||||
vector using the same layout with entries of type @a scalar_t.
|
||||
|
||||
If @a copy_data is true, the contents of this vector is copied to the new
|
||||
vector; otherwise, the new vector remains uninitialized.
|
||||
|
||||
If @a buffer is not NULL, return the vector data of the newly created
|
||||
object (in @a *buffer) , if it is stored as a contiguous array on the
|
||||
host; otherwise, set @a *buffer to NULL. */
|
||||
template <typename scalar_t>
|
||||
DVector Clone(bool copy_data, scalar_t **buffer) const
|
||||
{
|
||||
return DVector(DoVectorClone(copy_data, (void**)buffer,
|
||||
ScalarId<scalar_t>::value));
|
||||
}
|
||||
|
||||
/** @brief Compute and return the dot product of @a *this and @a x. In the
|
||||
case of an MPI-parallel vector, the result must be the MPI-global dot
|
||||
product. */
|
||||
/** Both vectors must have the same dynamic type and layout. */
|
||||
template <typename scalar_t>
|
||||
scalar_t DotProduct(const PVector &x) const
|
||||
{
|
||||
scalar_t result;
|
||||
DoDotProduct(x, &result, ScalarId<scalar_t>::value);
|
||||
return result;
|
||||
}
|
||||
|
||||
// TODO: add reduction operations: min, max, sum
|
||||
|
||||
/// Perform the operation @a *this = @a a @a x + @a b @a y.
|
||||
/** Rules:
|
||||
- the dynamic type of both @a x and @a y is the same as that of @a *this
|
||||
- if @a a == 0, neither @a x nor its data are accessed
|
||||
- if @a b == 0, neither @a y nor its data are accessed
|
||||
- @a x's data is never the same as @a y's data, unless @a a == 0, or
|
||||
@a b == 0
|
||||
- @a x's data or @a y's data may be the same as the data of @a *this
|
||||
- all accessed vectors, @a x, @a y, and @a *this have the same layout. */
|
||||
template <typename scalar_t>
|
||||
void Axpby(const scalar_t &a, const PVector &x,
|
||||
const scalar_t &b, const PVector &y)
|
||||
{ if (Size()) { DoAxpby(&a, x, &b, y, ScalarId<scalar_t>::value); } }
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_VECTOR_HPP
|
||||
@@ -0,0 +1,66 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
ELEMENT_BATCH : How many elements are in each
|
||||
. computation batch
|
||||
NUM_DOFS_1D : Dofs in the 1D segments
|
||||
NUM_DOFS_2D : Dofs in the 2D faces
|
||||
NUM_DOFS_3D : Dofs in the 3D domain
|
||||
NUM_QUAD_1D : Dofs in the 1D segments
|
||||
NUM_QUAD_2D : Dofs in the 2D faces
|
||||
NUM_QUAD_3D : Dofs in the 3D domain
|
||||
NUM_MAX_1D : max(NUM_QUAD_1D, NUM_DOFS_1D)
|
||||
NUM_QUAD_DOFS_1D: NUM_QUAD_1D * NUM_DOFS_1D
|
||||
COEFF_ARGS : Code that passes required arguments to the kernel
|
||||
COEFF : Code that computes the coefficient
|
||||
================================================
|
||||
|
||||
[MISSING]
|
||||
- Add support to auto-pick @dim and use @idxOrder on stack arrays
|
||||
| double a[2][2];
|
||||
| a[0][1]; <-- regular index
|
||||
| a(0,1); <-- uses @idxOrder a[0][1] or a[1][0]
|
||||
- Add support for @idxOrder to change indexing order after allocation
|
||||
| double a[2][2] @idxOrder(0,1);
|
||||
| a(0,1) -> a[1][0]
|
||||
| @set(a, idxOrder(1,0));
|
||||
| a(0,1) -> a[0][1]
|
||||
- Add support to iterate over loop depending on mode
|
||||
| for(i; @inner) {
|
||||
| for(0 < j < N) {} <-- ++j or j += block?
|
||||
| }
|
||||
*/
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
#if USING_TENSOR_OPS
|
||||
# ifdef OCCA_USING_GPU
|
||||
# if USING_LOW_ORDER
|
||||
# include "mfem-occa://diffusion/tensor/gpuHighOrder.okl"
|
||||
# else
|
||||
# include "mfem-occa://diffusion/tensor/gpuHighOrder.okl"
|
||||
# endif
|
||||
# else
|
||||
# include "mfem-occa://diffusion/tensor/cpu.okl"
|
||||
# endif
|
||||
#else
|
||||
# ifdef OCCA_USING_GPU
|
||||
# if USING_LOW_ORDER
|
||||
# include "mfem-occa://diffusion/simplex/gpuHighOrder.okl"
|
||||
# else
|
||||
# include "mfem-occa://diffusion/simplex/gpuHighOrder.okl"
|
||||
# endif
|
||||
# else
|
||||
# include "mfem-occa://diffusion/simplex/cpu.okl"
|
||||
# endif
|
||||
#endif
|
||||
@@ -0,0 +1,123 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
PArray *Array::DoClone(bool copy_data, void **buffer,
|
||||
std::size_t item_size) const
|
||||
{
|
||||
Array *new_array = new Array(OccaLayout(), item_size);
|
||||
if (copy_data)
|
||||
{
|
||||
new_array->slice.copyFrom(slice);
|
||||
}
|
||||
if (buffer)
|
||||
{
|
||||
*buffer = new_array->GetBuffer();
|
||||
}
|
||||
return new_array;
|
||||
}
|
||||
|
||||
int Array::DoResize(PLayout &new_layout, void **buffer,
|
||||
std::size_t item_size)
|
||||
{
|
||||
MFEM_ASSERT(dynamic_cast<Layout *>(&new_layout) != NULL,
|
||||
"new_layout is not an OCCA Layout");
|
||||
Layout *lt = static_cast<Layout *>(&new_layout);
|
||||
layout.Reset(lt); // Reset() checks if the pointer is the same
|
||||
int err = ResizeData(lt, item_size);
|
||||
if (!err && buffer)
|
||||
{
|
||||
*buffer = GetBuffer();
|
||||
}
|
||||
return err;
|
||||
}
|
||||
|
||||
void *Array::DoPullData(void *buffer, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
if (!slice.getDevice().hasSeparateMemorySpace())
|
||||
{
|
||||
return slice.ptr();
|
||||
}
|
||||
if (buffer)
|
||||
{
|
||||
slice.copyTo(buffer);
|
||||
}
|
||||
return buffer;
|
||||
}
|
||||
|
||||
void Array::DoFill(const void *value_ptr, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
switch (item_size)
|
||||
{
|
||||
case sizeof(int8_t):
|
||||
OccaFill((const int8_t *)value_ptr);
|
||||
break;
|
||||
case sizeof(int16_t):
|
||||
OccaFill((const int16_t *)value_ptr);
|
||||
break;
|
||||
case sizeof(int32_t):
|
||||
OccaFill((const int32_t *)value_ptr);
|
||||
break;
|
||||
// case sizeof(int64_t):
|
||||
// OccaFill((const int64_t *)value_ptr);
|
||||
// break;
|
||||
case sizeof(double):
|
||||
OccaFill((const double *)value_ptr);
|
||||
break;
|
||||
// case sizeof(::occa::double2):
|
||||
// OccaFill((const ::occa::double2 *)value_ptr);
|
||||
// break;
|
||||
default:
|
||||
MFEM_ABORT("item_size = " << item_size << " is not supported");
|
||||
}
|
||||
}
|
||||
|
||||
void Array::DoPushData(const void *src_buffer, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
if (slice.getDevice().hasSeparateMemorySpace() || slice.ptr() != src_buffer)
|
||||
{
|
||||
slice.copyFrom(src_buffer);
|
||||
}
|
||||
}
|
||||
|
||||
void Array::DoAssign(const PArray &src, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
// Note: static_cast can not be used here since PArray is a virtual base
|
||||
// class.
|
||||
const Array *source = dynamic_cast<const Array *>(&src);
|
||||
MFEM_ASSERT(source != NULL, "invalid source Array type");
|
||||
MFEM_ASSERT(Size() == source->Size(), "");
|
||||
slice.copyFrom(source->slice);
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,133 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_ARRAY_HPP
|
||||
#define MFEM_BACKENDS_OCCA_ARRAY_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
#include "layout.hpp"
|
||||
#include "../base/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Array : public virtual PArray
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// DLayout layout;
|
||||
|
||||
// Always true: Size()*item_size == slice.size() <= data.size()
|
||||
mutable ::occa::memory data, slice;
|
||||
|
||||
//
|
||||
// Virtual interface
|
||||
//
|
||||
|
||||
virtual void *DoGetData() const { return GetBuffer(); }
|
||||
|
||||
virtual PArray *DoClone(bool copy_data, void **buffer,
|
||||
std::size_t item_size) const;
|
||||
|
||||
virtual int DoResize(PLayout &new_layout, void **buffer,
|
||||
std::size_t item_size);
|
||||
|
||||
virtual void *DoPullData(void *buffer, std::size_t item_size);
|
||||
|
||||
virtual void DoFill(const void *value_ptr, std::size_t item_size);
|
||||
|
||||
virtual void DoPushData(const void *src_buffer, std::size_t item_size);
|
||||
|
||||
virtual void DoAssign(const PArray &src, std::size_t item_size);
|
||||
|
||||
//
|
||||
// Auxiliary methods
|
||||
//
|
||||
|
||||
inline void *GetBuffer() const;
|
||||
|
||||
inline int ResizeData(const Layout *lt, std::size_t item_size);
|
||||
|
||||
template <typename T>
|
||||
inline void OccaFill(const T *val_ptr)
|
||||
{ ::occa::linalg::operator_eq<T>(slice, *val_ptr); }
|
||||
|
||||
public:
|
||||
Array(Layout <, std::size_t item_size)
|
||||
: PArray(lt),
|
||||
data(lt.Alloc(lt.Size()*item_size)),
|
||||
slice(data)
|
||||
{ }
|
||||
|
||||
virtual ~Array() { }
|
||||
|
||||
inline void MakeRef(Array &master);
|
||||
|
||||
Layout &OccaLayout() const
|
||||
{ return *static_cast<Layout *>(layout.Get()); }
|
||||
|
||||
::occa::memory &OccaMem() { return slice; }
|
||||
const ::occa::memory &OccaMem() const { return slice; }
|
||||
};
|
||||
|
||||
|
||||
//
|
||||
// Inline methods
|
||||
//
|
||||
|
||||
inline void *Array::GetBuffer() const
|
||||
{
|
||||
if (!slice.getDevice().hasSeparateMemorySpace())
|
||||
{
|
||||
return slice.ptr();
|
||||
}
|
||||
return NULL;
|
||||
}
|
||||
|
||||
inline int Array::ResizeData(const Layout *lt, std::size_t item_size)
|
||||
{
|
||||
const std::size_t new_bytes = lt->Size()*item_size;
|
||||
if (data.size() < new_bytes ||
|
||||
data.getDHandle() != lt->OccaEngine().GetDevice().getDHandle())
|
||||
{
|
||||
data = lt->Alloc(new_bytes);
|
||||
slice = data;
|
||||
// If memory allocation fails - an exception is thrown.
|
||||
}
|
||||
else if (slice.size() != new_bytes)
|
||||
{
|
||||
slice = data.slice(0, new_bytes);
|
||||
}
|
||||
return 0;
|
||||
}
|
||||
|
||||
inline void Array::MakeRef(Array &master)
|
||||
{
|
||||
layout = master.layout;
|
||||
data = master.data;
|
||||
slice = master.slice;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_ARRAY_HPP
|
||||
@@ -0,0 +1,47 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
bool Backend::Supports(const std::string &engine_spec) const
|
||||
{
|
||||
// TODO: check if 'engine_spec' is valid OCCA string.
|
||||
return true;
|
||||
}
|
||||
|
||||
mfem::Engine *Create(const std::string &engine_spec)
|
||||
{
|
||||
return new Engine(engine_spec);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
mfem::Engine *Create(MPI_Comm comm, const std::string &engine_spec)
|
||||
{
|
||||
return new Engine(comm, engine_spec);
|
||||
}
|
||||
#endif
|
||||
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,49 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_BACKEND_HPP
|
||||
#define MFEM_BACKENDS_OCCA_BACKEND_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
// Only the Backend and Engine classes should be exposed through "backend.hpp"
|
||||
#include "../base/backend.hpp"
|
||||
#include "engine.hpp"
|
||||
#include <occa.hpp>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Backend : public mfem::Backend
|
||||
{
|
||||
public:
|
||||
virtual ~Backend();
|
||||
|
||||
virtual bool Supports(const std::string &engine_spec) const;
|
||||
|
||||
virtual mfem::Engine *Create(const std::string &engine_spec);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
virtual mfem::Engine *Create(MPI_Comm comm, const std::string &engine_spec);
|
||||
#endif
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_BACKEND_HPP
|
||||
@@ -0,0 +1,514 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "../../fem/bilinearform.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
OccaBilinearForm::OccaBilinearForm(FiniteElementSpace *ofespace_) :
|
||||
Operator(ofespace_->OccaVLayout()),
|
||||
localX((ofespace_->OccaEVLayout().DontDelete(), ofespace_->OccaEVLayout())),
|
||||
localY((ofespace_->OccaEVLayout().DontDelete(), ofespace_->OccaEVLayout()))
|
||||
{
|
||||
Init(ofespace_->OccaEngine(), ofespace_, ofespace_);
|
||||
}
|
||||
|
||||
OccaBilinearForm::OccaBilinearForm(FiniteElementSpace *otrialFESpace_,
|
||||
FiniteElementSpace *otestFESpace_) :
|
||||
Operator(otrialFESpace_->OccaVLayout(),
|
||||
otestFESpace_->OccaVLayout()),
|
||||
localX((otrialFESpace_->OccaEVLayout().DontDelete(), otrialFESpace_->OccaEVLayout())),
|
||||
localY((otestFESpace_->OccaEVLayout().DontDelete(), otestFESpace_->OccaEVLayout()))
|
||||
{
|
||||
Init(otrialFESpace_->OccaEngine(), otrialFESpace_, otestFESpace_);
|
||||
}
|
||||
|
||||
void OccaBilinearForm::Init(const Engine &e,
|
||||
FiniteElementSpace *otrialFESpace_,
|
||||
FiniteElementSpace *otestFESpace_)
|
||||
{
|
||||
engine.Reset(&e);
|
||||
|
||||
otrialFESpace = otrialFESpace_;
|
||||
trialFESpace = otrialFESpace_->GetFESpace();
|
||||
|
||||
otestFESpace = otestFESpace_;
|
||||
testFESpace = otestFESpace_->GetFESpace();
|
||||
|
||||
mesh = trialFESpace->GetMesh();
|
||||
|
||||
const int elements = GetNE();
|
||||
|
||||
const int trialVDim = trialFESpace->GetVDim();
|
||||
|
||||
const int trialLocalDofs = otrialFESpace->GetLocalDofs();
|
||||
const int testLocalDofs = otestFESpace->GetLocalDofs();
|
||||
|
||||
// First-touch policy when running with OpenMP
|
||||
if (GetDevice().mode() == "OpenMP")
|
||||
{
|
||||
const std::string &okl_path = OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = OccaEngine().GetOklDefines();
|
||||
::occa::kernel initLocalKernel =
|
||||
GetDevice().buildKernel(okl_path + "utils.okl",
|
||||
"InitLocalVector",
|
||||
okl_defines);
|
||||
|
||||
const std::size_t sd = sizeof(double);
|
||||
const uint64_t trialEntries = sd * (elements * trialLocalDofs);
|
||||
const uint64_t testEntries = sd * (elements * testLocalDofs);
|
||||
for (int v = 0; v < trialVDim; ++v)
|
||||
{
|
||||
const uint64_t trialOffset = v * trialEntries;
|
||||
const uint64_t testOffset = v * testEntries;
|
||||
|
||||
initLocalKernel(elements, trialLocalDofs,
|
||||
localX.OccaMem().slice(trialOffset, trialEntries));
|
||||
initLocalKernel(elements, testLocalDofs,
|
||||
localY.OccaMem().slice(testOffset, testEntries));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
int OccaBilinearForm::BaseGeom() const
|
||||
{
|
||||
return mesh->GetElementBaseGeometry();
|
||||
}
|
||||
|
||||
int OccaBilinearForm::GetDim() const
|
||||
{
|
||||
return mesh->Dimension();
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetNE() const
|
||||
{
|
||||
return mesh->GetNE();
|
||||
}
|
||||
|
||||
Mesh& OccaBilinearForm::GetMesh() const
|
||||
{
|
||||
return *mesh;
|
||||
}
|
||||
|
||||
FiniteElementSpace& OccaBilinearForm::GetTrialOccaFESpace() const
|
||||
{
|
||||
return *otrialFESpace;
|
||||
}
|
||||
|
||||
FiniteElementSpace& OccaBilinearForm::GetTestOccaFESpace() const
|
||||
{
|
||||
return *otestFESpace;
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace& OccaBilinearForm::GetTrialFESpace() const
|
||||
{
|
||||
return *trialFESpace;
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace& OccaBilinearForm::GetTestFESpace() const
|
||||
{
|
||||
return *testFESpace;
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetTrialNDofs() const
|
||||
{
|
||||
return trialFESpace->GetNDofs();
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetTestNDofs() const
|
||||
{
|
||||
return testFESpace->GetNDofs();
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetTrialVDim() const
|
||||
{
|
||||
return trialFESpace->GetVDim();
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetTestVDim() const
|
||||
{
|
||||
return testFESpace->GetVDim();
|
||||
}
|
||||
|
||||
const FiniteElement& OccaBilinearForm::GetTrialFE(const int i) const
|
||||
{
|
||||
return *(trialFESpace->GetFE(i));
|
||||
}
|
||||
|
||||
const FiniteElement& OccaBilinearForm::GetTestFE(const int i) const
|
||||
{
|
||||
return *(testFESpace->GetFE(i));
|
||||
}
|
||||
|
||||
// Adds new Domain Integrator.
|
||||
void OccaBilinearForm::AddDomainIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
AddIntegrator(integrator, props, DomainIntegrator);
|
||||
}
|
||||
|
||||
// Adds new Boundary Integrator.
|
||||
void OccaBilinearForm::AddBoundaryIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
AddIntegrator(integrator, props, BoundaryIntegrator);
|
||||
}
|
||||
|
||||
// Adds new interior Face Integrator.
|
||||
void OccaBilinearForm::AddInteriorFaceIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
AddIntegrator(integrator, props, InteriorFaceIntegrator);
|
||||
}
|
||||
|
||||
// Adds new boundary Face Integrator.
|
||||
void OccaBilinearForm::AddBoundaryFaceIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
AddIntegrator(integrator, props, BoundaryFaceIntegrator);
|
||||
}
|
||||
|
||||
// Adds Integrator based on OccaIntegratorType
|
||||
void OccaBilinearForm::AddIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props,
|
||||
const OccaIntegratorType itype)
|
||||
{
|
||||
if (integrator == NULL)
|
||||
{
|
||||
std::stringstream error_ss;
|
||||
error_ss << "OccaBilinearForm::";
|
||||
switch (itype)
|
||||
{
|
||||
case DomainIntegrator : error_ss << "AddDomainIntegrator"; break;
|
||||
case BoundaryIntegrator : error_ss << "AddBoundaryIntegrator"; break;
|
||||
case InteriorFaceIntegrator: error_ss << "AddInteriorFaceIntegrator"; break;
|
||||
case BoundaryFaceIntegrator: error_ss << "AddBoundaryFaceIntegrator"; break;
|
||||
}
|
||||
error_ss << " (...):\n"
|
||||
<< " Integrator is NULL";
|
||||
const std::string error = error_ss.str();
|
||||
mfem_error(error.c_str());
|
||||
}
|
||||
integrator->SetupIntegrator(*this, baseKernelProps + props, itype);
|
||||
integrators.push_back(integrator);
|
||||
}
|
||||
|
||||
const mfem::Operator* OccaBilinearForm::GetTrialProlongation() const
|
||||
{
|
||||
return otrialFESpace->GetProlongationOperator();
|
||||
}
|
||||
|
||||
const mfem::Operator* OccaBilinearForm::GetTestProlongation() const
|
||||
{
|
||||
return otestFESpace->GetProlongationOperator();
|
||||
}
|
||||
|
||||
const mfem::Operator* OccaBilinearForm::GetTrialRestriction() const
|
||||
{
|
||||
return otrialFESpace->GetRestrictionOperator();
|
||||
}
|
||||
|
||||
const mfem::Operator* OccaBilinearForm::GetTestRestriction() const
|
||||
{
|
||||
return otestFESpace->GetRestrictionOperator();
|
||||
}
|
||||
|
||||
void OccaBilinearForm::Assemble()
|
||||
{
|
||||
// [MISSING] Find geometric information that is needed by intergrators
|
||||
// to share between integrators.
|
||||
const int integratorCount = (int) integrators.size();
|
||||
for (int i = 0; i < integratorCount; ++i)
|
||||
{
|
||||
integrators[i]->Assemble();
|
||||
}
|
||||
}
|
||||
|
||||
void OccaBilinearForm::FormLinearSystem(const mfem::Array<int> &constraintList,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::Operator *&Aout,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior)
|
||||
{
|
||||
FormOperator(constraintList, Aout);
|
||||
InitRHS(constraintList, x, b, Aout, X, B, copy_interior);
|
||||
}
|
||||
|
||||
void OccaBilinearForm::FormOperator(const mfem::Array<int> &constraintList,
|
||||
mfem::Operator *&Aout)
|
||||
{
|
||||
const mfem::Operator *trialP = GetTrialProlongation();
|
||||
const mfem::Operator *testP = GetTestProlongation();
|
||||
mfem::Operator *rap = this;
|
||||
|
||||
if (trialP)
|
||||
{
|
||||
rap = new RAPOperator(*testP, *this, *trialP);
|
||||
}
|
||||
|
||||
Aout = new OccaConstrainedOperator(rap, constraintList,
|
||||
rap != this);
|
||||
}
|
||||
|
||||
void OccaBilinearForm::InitRHS(const mfem::Array<int> &constraintList,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::Operator *A,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior)
|
||||
{
|
||||
const std::string okl_defines = OccaEngine().GetOklDefines();
|
||||
|
||||
// FIXME: move these kernels to the Backend?
|
||||
static ::occa::kernelBuilder get_subvector_builder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"vector_get_subvector",
|
||||
|
||||
"const int dof_i = v2[i];"
|
||||
"v0[i] = dof_i >= 0 ? v1[dof_i] : -v1[-dof_i - 1];",
|
||||
|
||||
"defines: {"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" VTYPE2: 'int',"
|
||||
" TILESIZE: 128,"
|
||||
"}" + okl_defines);
|
||||
|
||||
static ::occa::kernelBuilder set_subvector_builder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"vector_set_subvector",
|
||||
"const int dof_i = v2[i];"
|
||||
"if (dof_i >= 0) { v0[dof_i] = v1[i]; }"
|
||||
"else { v0[-dof_i - 1] = -v1[i]; }",
|
||||
|
||||
"defines: {"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" VTYPE2: 'int',"
|
||||
" TILESIZE: 128,"
|
||||
"}" + okl_defines);
|
||||
|
||||
const mfem::Operator *P = GetTrialProlongation();
|
||||
const mfem::Operator *R = GetTrialRestriction();
|
||||
|
||||
if (P)
|
||||
{
|
||||
// Variational restriction with P
|
||||
B.Resize(P->InLayout());
|
||||
P->MultTranspose(b, B);
|
||||
X.Resize(R->OutLayout());
|
||||
R->Mult(x, X);
|
||||
}
|
||||
else
|
||||
{
|
||||
// rap, X and B point to the same data as this, x and b
|
||||
X.MakeRef(x);
|
||||
B.MakeRef(b);
|
||||
}
|
||||
|
||||
if (!copy_interior && constraintList.Size() > 0)
|
||||
{
|
||||
::occa::kernel get_subvector_kernel =
|
||||
get_subvector_builder.build(GetDevice());
|
||||
::occa::kernel set_subvector_kernel =
|
||||
set_subvector_builder.build(GetDevice());
|
||||
|
||||
const Array &constrList = constraintList.Get_PArray()->As<Array>();
|
||||
Vector subvec(constrList.OccaLayout());
|
||||
|
||||
get_subvector_kernel(constraintList.Size(),
|
||||
subvec.OccaMem(),
|
||||
X.Get_PVector()->As<Vector>().OccaMem(),
|
||||
constrList.OccaMem());
|
||||
|
||||
X.Fill(0.0);
|
||||
|
||||
set_subvector_kernel(constraintList.Size(),
|
||||
X.Get_PVector()->As<Vector>().OccaMem(),
|
||||
subvec.OccaMem(),
|
||||
constrList.OccaMem());
|
||||
}
|
||||
|
||||
OccaConstrainedOperator *cA = dynamic_cast<OccaConstrainedOperator*>(A);
|
||||
if (cA)
|
||||
{
|
||||
cA->EliminateRHS(X.Get_PVector()->As<Vector>(),
|
||||
B.Get_PVector()->As<Vector>());
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem_error("OccaBilinearForm::InitRHS expects an OccaConstrainedOperator");
|
||||
}
|
||||
}
|
||||
|
||||
// Matrix vector multiplication.
|
||||
void OccaBilinearForm::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
otrialFESpace->GlobalToLocal(x, localX);
|
||||
localY.Fill<double>(0.0);
|
||||
|
||||
const int integratorCount = (int) integrators.size();
|
||||
for (int i = 0; i < integratorCount; ++i)
|
||||
{
|
||||
integrators[i]->MultAdd(localX, localY);
|
||||
}
|
||||
|
||||
otestFESpace->LocalToGlobal(localY, y);
|
||||
}
|
||||
|
||||
// Matrix transpose vector multiplication.
|
||||
void OccaBilinearForm::MultTranspose_(const Vector &x, Vector &y) const
|
||||
{
|
||||
otestFESpace->GlobalToLocal(x, localX);
|
||||
localY.Fill<double>(0.0);
|
||||
|
||||
const int integratorCount = (int) integrators.size();
|
||||
for (int i = 0; i < integratorCount; ++i)
|
||||
{
|
||||
integrators[i]->MultTransposeAdd(localX, localY);
|
||||
}
|
||||
|
||||
otrialFESpace->LocalToGlobal(localY, y);
|
||||
}
|
||||
|
||||
void OccaBilinearForm::OccaRecoverFEMSolution(const mfem::Vector &X,
|
||||
const mfem::Vector &b,
|
||||
mfem::Vector &x)
|
||||
{
|
||||
const mfem::Operator *P = this->GetTrialProlongation();
|
||||
if (P)
|
||||
{
|
||||
// Apply conforming prolongation
|
||||
x.Resize(P->OutLayout());
|
||||
P->Mult(X, x);
|
||||
}
|
||||
// Otherwise X and x point to the same data
|
||||
}
|
||||
|
||||
// Frees memory bilinear form.
|
||||
OccaBilinearForm::~OccaBilinearForm()
|
||||
{
|
||||
// Make sure all integrators free their data
|
||||
IntegratorVector::iterator it = integrators.begin();
|
||||
while (it != integrators.end())
|
||||
{
|
||||
delete *it;
|
||||
++it;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void BilinearForm::InitOccaBilinearForm()
|
||||
{
|
||||
// Init 'obform' using 'bform'
|
||||
MFEM_ASSERT(bform != NULL, "");
|
||||
MFEM_ASSERT(obform == NULL, "");
|
||||
|
||||
FiniteElementSpace &ofes =
|
||||
bform->FESpace()->Get_PFESpace()->As<FiniteElementSpace>();
|
||||
obform = new OccaBilinearForm(&ofes);
|
||||
|
||||
// Transfer domain integrators
|
||||
mfem::Array<mfem::BilinearFormIntegrator*> &dbfi = *bform->GetDBFI();
|
||||
for (int i = 0; i < dbfi.Size(); i++)
|
||||
{
|
||||
std::string integ_name(dbfi[i]->Name());
|
||||
Coefficient *scal_coeff = dbfi[i]->GetScalarCoefficient();
|
||||
ConstantCoefficient *const_coeff =
|
||||
dynamic_cast<ConstantCoefficient*>(scal_coeff);
|
||||
// TODO: other types of coefficients ...
|
||||
double val = const_coeff ? const_coeff->constant : 1.0;
|
||||
OccaCoefficient ocoeff(obform->OccaEngine(), val);
|
||||
|
||||
OccaIntegrator *ointeg = NULL;
|
||||
|
||||
if (integ_name == "(undefined)")
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator does not define Name()");
|
||||
}
|
||||
else if (integ_name == "diffusion")
|
||||
{
|
||||
ointeg = new OccaDiffusionIntegrator(ocoeff);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator [Name() = " << integ_name
|
||||
<< "] is not supported");
|
||||
}
|
||||
|
||||
const mfem::IntegrationRule *ir = dbfi[i]->GetIntRule();
|
||||
if (ir) { ointeg->SetIntegrationRule(*ir); }
|
||||
|
||||
obform->AddDomainIntegrator(ointeg);
|
||||
}
|
||||
|
||||
// TODO: other types of integrators ...
|
||||
}
|
||||
|
||||
bool BilinearForm::Assemble()
|
||||
{
|
||||
if (obform == NULL) { InitOccaBilinearForm(); }
|
||||
|
||||
obform->Assemble();
|
||||
|
||||
return true; // --> host assembly is not needed
|
||||
}
|
||||
|
||||
void BilinearForm::FormSystemMatrix(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::OperatorHandle &A)
|
||||
{
|
||||
if (A.Type() == mfem::Operator::ANY_TYPE)
|
||||
{
|
||||
mfem::Operator *Aout = NULL;
|
||||
obform->FormOperator(ess_tdof_list, Aout);
|
||||
A.Reset(Aout);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Operator::Type is not supported, type = " << A.Type());
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::FormLinearSystem(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::OperatorHandle &A,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior)
|
||||
{
|
||||
FormSystemMatrix(ess_tdof_list, A);
|
||||
obform->InitRHS(ess_tdof_list, x, b, A.Ptr(), X, B, copy_interior);
|
||||
}
|
||||
|
||||
void BilinearForm::RecoverFEMSolution(const mfem::Vector &X,
|
||||
const mfem::Vector &b,
|
||||
mfem::Vector &x)
|
||||
{
|
||||
obform->OccaRecoverFEMSolution(X, b, x);
|
||||
}
|
||||
|
||||
BilinearForm::~BilinearForm()
|
||||
{
|
||||
delete obform;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,213 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_BILINEAR_FORM_HPP
|
||||
#define MFEM_BACKENDS_OCCA_BILINEAR_FORM_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
enum OccaIntegratorType
|
||||
{
|
||||
DomainIntegrator = 0,
|
||||
BoundaryIntegrator = 1,
|
||||
InteriorFaceIntegrator = 2,
|
||||
BoundaryFaceIntegrator = 3
|
||||
};
|
||||
|
||||
class OccaIntegrator;
|
||||
|
||||
|
||||
/** Class for bilinear form - "Matrix" with associated FE space and
|
||||
BLFIntegrators. */
|
||||
class OccaBilinearForm : public Operator
|
||||
{
|
||||
friend class OccaIntegrator;
|
||||
|
||||
protected:
|
||||
typedef std::vector<OccaIntegrator*> IntegratorVector;
|
||||
|
||||
SharedPtr<const Engine> engine;
|
||||
|
||||
// State information
|
||||
mutable mfem::Mesh *mesh;
|
||||
|
||||
mutable FiniteElementSpace *otrialFESpace;
|
||||
mutable mfem::FiniteElementSpace *trialFESpace;
|
||||
|
||||
mutable FiniteElementSpace *otestFESpace;
|
||||
mutable mfem::FiniteElementSpace *testFESpace;
|
||||
|
||||
IntegratorVector integrators;
|
||||
|
||||
// Device data
|
||||
::occa::properties baseKernelProps;
|
||||
|
||||
// The input and output vectors are mapped to local nodes for efficient
|
||||
// operations. In other words, they are E-vectors.
|
||||
// The size is: (number of elements) * (nodes in element) * (vector dim)
|
||||
mutable Vector localX, localY;
|
||||
|
||||
public:
|
||||
OccaBilinearForm(FiniteElementSpace *ofespace_);
|
||||
|
||||
OccaBilinearForm(FiniteElementSpace *otrialFESpace_,
|
||||
FiniteElementSpace *otestFESpace_);
|
||||
|
||||
void Init(const Engine &e,
|
||||
FiniteElementSpace *otrialFESpace_,
|
||||
FiniteElementSpace *otestFESpace_);
|
||||
|
||||
const Engine &OccaEngine() const { return *engine; }
|
||||
|
||||
::occa::device GetDevice(int idx = 0) const
|
||||
{ return engine->GetDevice(idx); }
|
||||
|
||||
// Useful mesh Information
|
||||
int BaseGeom() const;
|
||||
int GetDim() const;
|
||||
int64_t GetNE() const;
|
||||
|
||||
mfem::Mesh& GetMesh() const;
|
||||
|
||||
FiniteElementSpace& GetTrialOccaFESpace() const;
|
||||
FiniteElementSpace& GetTestOccaFESpace() const;
|
||||
|
||||
mfem::FiniteElementSpace& GetTrialFESpace() const;
|
||||
mfem::FiniteElementSpace& GetTestFESpace() const;
|
||||
|
||||
// Useful FE information
|
||||
int64_t GetTrialNDofs() const;
|
||||
int64_t GetTestNDofs() const;
|
||||
|
||||
int64_t GetTrialVDim() const;
|
||||
int64_t GetTestVDim() const;
|
||||
|
||||
const mfem::FiniteElement& GetTrialFE(const int i) const;
|
||||
const mfem::FiniteElement& GetTestFE(const int i) const;
|
||||
|
||||
// Adds new Domain Integrator.
|
||||
void AddDomainIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props =
|
||||
::occa::properties());
|
||||
|
||||
// Adds new Boundary Integrator.
|
||||
void AddBoundaryIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props =
|
||||
::occa::properties());
|
||||
|
||||
// Adds new interior Face Integrator.
|
||||
void AddInteriorFaceIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props =
|
||||
::occa::properties());
|
||||
|
||||
// Adds new boundary Face Integrator.
|
||||
void AddBoundaryFaceIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props =
|
||||
::occa::properties());
|
||||
|
||||
// Adds Integrator based on OccaIntegratorType
|
||||
void AddIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props,
|
||||
const OccaIntegratorType itype);
|
||||
|
||||
virtual const mfem::Operator *GetTrialProlongation() const;
|
||||
virtual const mfem::Operator *GetTestProlongation() const;
|
||||
|
||||
virtual const mfem::Operator *GetTrialRestriction() const;
|
||||
virtual const mfem::Operator *GetTestRestriction() const;
|
||||
|
||||
// Assembles the form i.e. sums over all domain/bdr integrators.
|
||||
virtual void Assemble();
|
||||
|
||||
void FormLinearSystem(const mfem::Array<int> &constraintList,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::Operator *&Aout,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior = 0);
|
||||
|
||||
void FormOperator(const mfem::Array<int> &constraintList,
|
||||
mfem::Operator *&Aout);
|
||||
|
||||
void InitRHS(const mfem::Array<int> &constraintList,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::Operator *Aout,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior = 0);
|
||||
|
||||
// overrides
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
virtual void MultTranspose_(const Vector &x, Vector &y) const;
|
||||
|
||||
void OccaRecoverFEMSolution(const mfem::Vector &X, const mfem::Vector &b,
|
||||
mfem::Vector &x);
|
||||
|
||||
// Destroys bilinear form.
|
||||
~OccaBilinearForm();
|
||||
};
|
||||
|
||||
|
||||
/// TODO: doxygen
|
||||
class BilinearForm : public mfem::PBilinearForm
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// mfem::BilinearForm *bform;
|
||||
OccaBilinearForm *obform;
|
||||
|
||||
// Called from Assemble() if obform is NULL to initialize obform.
|
||||
void InitOccaBilinearForm();
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
BilinearForm(const Engine &e, mfem::BilinearForm &bf)
|
||||
: mfem::PBilinearForm(e, bf), obform(NULL) { }
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~BilinearForm();
|
||||
|
||||
/// Assemble the PBilinearForm.
|
||||
/** This method is called from the method mfem::BilinearForm::Assemble() of
|
||||
the associated mfem::BilinearForm, #bform.
|
||||
@returns True, if the host assembly should NOT be performed. */
|
||||
virtual bool Assemble();
|
||||
|
||||
virtual void FormSystemMatrix(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::OperatorHandle &A);
|
||||
|
||||
virtual void FormLinearSystem(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::OperatorHandle &A,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior);
|
||||
|
||||
virtual void RecoverFEMSolution(const mfem::Vector &X, const mfem::Vector &b,
|
||||
mfem::Vector &x);
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_BILINEAR_FORM_HPP
|
||||
@@ -0,0 +1,956 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "bilininteg.hpp"
|
||||
#include "../../fem/fem.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
std::map<std::string, OccaDofQuadMaps> OccaDofQuadMaps::AllDofQuadMaps;
|
||||
|
||||
OccaGeometry OccaGeometry::Get(::occa::device device,
|
||||
FiniteElementSpace &ofespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const int flags)
|
||||
{
|
||||
OccaGeometry geom;
|
||||
|
||||
mfem::Mesh &mesh = *(ofespace.GetMesh());
|
||||
if (!mesh.GetNodes())
|
||||
{
|
||||
mesh.SetCurvature(1, false, -1, mfem::Ordering::byVDIM);
|
||||
}
|
||||
mfem::GridFunction &nodes = *(mesh.GetNodes());
|
||||
const mfem::FiniteElementSpace &fespace = *(nodes.FESpace());
|
||||
const mfem::FiniteElement &fe = *(fespace.GetFE(0));
|
||||
|
||||
const int dims = fe.GetDim();
|
||||
const int elements = fespace.GetNE();
|
||||
const int numDofs = fe.GetDof();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
MFEM_ASSERT(dims == mesh.SpaceDimension(), "");
|
||||
|
||||
geom.meshNodes.allocate(device,
|
||||
dims, numDofs, elements);
|
||||
|
||||
const mfem::Table &e2dTable = fespace.GetElementToDofTable();
|
||||
const int *elementMap = e2dTable.GetJ();
|
||||
nodes.Pull();
|
||||
for (int e = 0; e < elements; ++e)
|
||||
{
|
||||
for (int dof = 0; dof < numDofs; ++dof)
|
||||
{
|
||||
const int gid = elementMap[dof + numDofs*e];
|
||||
for (int dim = 0; dim < dims; ++dim)
|
||||
{
|
||||
geom.meshNodes(dim, dof, e) = nodes[fespace.DofToVDof(gid,dim)];
|
||||
}
|
||||
}
|
||||
}
|
||||
geom.meshNodes.keepInDevice();
|
||||
|
||||
if (flags & Jacobian)
|
||||
{
|
||||
geom.J.allocate(device,
|
||||
dims, dims, numQuad, elements);
|
||||
}
|
||||
else
|
||||
{
|
||||
geom.J.allocate(device, 1);
|
||||
}
|
||||
if (flags & JacobianInv)
|
||||
{
|
||||
geom.invJ.allocate(device,
|
||||
dims, dims, numQuad, elements);
|
||||
}
|
||||
else
|
||||
{
|
||||
geom.invJ.allocate(device, 1);
|
||||
}
|
||||
if (flags & JacobianDet)
|
||||
{
|
||||
geom.detJ.allocate(device,
|
||||
numQuad, elements);
|
||||
}
|
||||
else
|
||||
{
|
||||
geom.detJ.allocate(device, 1);
|
||||
}
|
||||
|
||||
geom.J.stopManaging();
|
||||
geom.invJ.stopManaging();
|
||||
geom.detJ.stopManaging();
|
||||
|
||||
OccaDofQuadMaps &maps = OccaDofQuadMaps::GetSimplexMaps(device, fe, ir);
|
||||
|
||||
::occa::properties props;
|
||||
props["defines/NUM_DOFS"] = numDofs;
|
||||
props["defines/NUM_QUAD"] = numQuad;
|
||||
props["defines/STORE_JACOBIAN"] = (flags & Jacobian);
|
||||
props["defines/STORE_JACOBIAN_INV"] = (flags & JacobianInv);
|
||||
props["defines/STORE_JACOBIAN_DET"] = (flags & JacobianDet);
|
||||
|
||||
const std::string &okl_path = ofespace.OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = ofespace.OccaEngine().GetOklDefines();
|
||||
::occa::kernel init = device.buildKernel(okl_path + "geometry.okl",
|
||||
stringWithDim("InitGeometryInfo",
|
||||
fe.GetDim()),
|
||||
props + okl_defines);
|
||||
init(elements,
|
||||
maps.dofToQuadD,
|
||||
geom.meshNodes,
|
||||
geom.J, geom.invJ, geom.detJ);
|
||||
|
||||
return geom;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps::OccaDofQuadMaps() :
|
||||
hash() {}
|
||||
|
||||
OccaDofQuadMaps::OccaDofQuadMaps(const OccaDofQuadMaps &maps)
|
||||
{
|
||||
*this = maps;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::operator = (const OccaDofQuadMaps &maps)
|
||||
{
|
||||
hash = maps.hash;
|
||||
dofToQuad = maps.dofToQuad;
|
||||
dofToQuadD = maps.dofToQuadD;
|
||||
quadToDof = maps.quadToDof;
|
||||
quadToDofD = maps.quadToDofD;
|
||||
quadWeights = maps.quadWeights;
|
||||
return *this;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::Get(::occa::device device,
|
||||
const FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return Get(device,
|
||||
*fespace.GetFE(0),
|
||||
*fespace.GetFE(0),
|
||||
ir,
|
||||
transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::Get(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return Get(device, fe, fe, ir, transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::Get(::occa::device device,
|
||||
const FiniteElementSpace &trialFESpace,
|
||||
const FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return Get(device,
|
||||
*trialFESpace.GetFE(0),
|
||||
*testFESpace.GetFE(0),
|
||||
ir,
|
||||
transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::Get(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return (dynamic_cast<const mfem::TensorBasisElement*>(&trialFE)
|
||||
? GetTensorMaps(device, trialFE, testFE, ir, transpose)
|
||||
: GetSimplexMaps(device, trialFE, testFE, ir, transpose));
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::GetTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return GetTensorMaps(device,
|
||||
fe, fe,
|
||||
ir, transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::GetTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
const mfem::TensorBasisElement &trialTFE =
|
||||
dynamic_cast<const mfem::TensorBasisElement&>(trialFE);
|
||||
const mfem::TensorBasisElement &testTFE =
|
||||
dynamic_cast<const mfem::TensorBasisElement&>(testFE);
|
||||
|
||||
std::stringstream ss;
|
||||
ss << ::occa::hash(device)
|
||||
<< "Tensor"
|
||||
<< "O1:" << trialFE.GetOrder()
|
||||
<< "O2:" << testFE.GetOrder()
|
||||
<< "BT1:" << trialTFE.GetBasisType()
|
||||
<< "BT2:" << testTFE.GetBasisType()
|
||||
<< "Q:" << ir.GetNPoints();
|
||||
std::string hash = ss.str();
|
||||
|
||||
// If we've already made the dof-quad maps, reuse them
|
||||
OccaDofQuadMaps &maps = AllDofQuadMaps[hash];
|
||||
if (!maps.hash.size())
|
||||
{
|
||||
// Create the dof-quad maps
|
||||
maps.hash = hash;
|
||||
|
||||
OccaDofQuadMaps trialMaps = GetD2QTensorMaps(device, trialFE, ir);
|
||||
OccaDofQuadMaps testMaps = GetD2QTensorMaps(device, testFE , ir, true);
|
||||
|
||||
maps.dofToQuad = trialMaps.dofToQuad;
|
||||
maps.dofToQuadD = trialMaps.dofToQuadD;
|
||||
maps.quadToDof = testMaps.dofToQuad;
|
||||
maps.quadToDofD = testMaps.dofToQuadD;
|
||||
maps.quadWeights = testMaps.quadWeights;
|
||||
}
|
||||
return maps;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps OccaDofQuadMaps::GetD2QTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
const mfem::TensorBasisElement &tfe =
|
||||
dynamic_cast<const mfem::TensorBasisElement&>(fe);
|
||||
|
||||
const mfem::Poly_1D::Basis &basis = tfe.GetBasis1D();
|
||||
const int order = fe.GetOrder();
|
||||
// [MISSING] Get 1D dofs
|
||||
const int dofs = order + 1;
|
||||
const int dims = fe.GetDim();
|
||||
|
||||
// Create the dof -> quadrature point map
|
||||
const mfem::IntegrationRule &ir1D =
|
||||
mfem::IntRules.Get(mfem::Geometry::SEGMENT, ir.GetOrder());
|
||||
const int quadPoints = ir1D.GetNPoints();
|
||||
const int quadPoints2D = quadPoints*quadPoints;
|
||||
const int quadPoints3D = quadPoints2D*quadPoints;
|
||||
const int quadPointsND = ((dims == 1) ? quadPoints :
|
||||
((dims == 2) ? quadPoints2D : quadPoints3D));
|
||||
|
||||
OccaDofQuadMaps maps;
|
||||
// Initialize the dof -> quad mapping
|
||||
maps.dofToQuad.allocate(device,
|
||||
quadPoints, dofs);
|
||||
maps.dofToQuadD.allocate(device,
|
||||
quadPoints, dofs);
|
||||
|
||||
double *quadWeights1DData = NULL;
|
||||
|
||||
if (transpose)
|
||||
{
|
||||
maps.dofToQuad.reindex(1,0);
|
||||
maps.dofToQuadD.reindex(1,0);
|
||||
// Initialize quad weights only for transpose
|
||||
maps.quadWeights.allocate(device,
|
||||
quadPointsND);
|
||||
quadWeights1DData = new double[quadPoints];
|
||||
}
|
||||
|
||||
mfem::Vector d2q(dofs);
|
||||
mfem::Vector d2qD(dofs);
|
||||
for (int q = 0; q < quadPoints; ++q)
|
||||
{
|
||||
const mfem::IntegrationPoint &ip = ir1D.IntPoint(q);
|
||||
basis.Eval(ip.x, d2q, d2qD);
|
||||
if (transpose)
|
||||
{
|
||||
quadWeights1DData[q] = ip.weight;
|
||||
}
|
||||
for (int d = 0; d < dofs; ++d)
|
||||
{
|
||||
maps.dofToQuad(q, d) = d2q[d];
|
||||
maps.dofToQuadD(q, d) = d2qD[d];
|
||||
}
|
||||
}
|
||||
|
||||
maps.dofToQuad.keepInDevice();
|
||||
maps.dofToQuadD.keepInDevice();
|
||||
|
||||
if (transpose)
|
||||
{
|
||||
for (int q = 0; q < quadPointsND; ++q)
|
||||
{
|
||||
const int qx = q % quadPoints;
|
||||
const int qz = q / quadPoints2D;
|
||||
const int qy = (q - qz*quadPoints2D) / quadPoints;
|
||||
double w = quadWeights1DData[qx];
|
||||
if (dims > 1)
|
||||
{
|
||||
w *= quadWeights1DData[qy];
|
||||
}
|
||||
if (dims > 2)
|
||||
{
|
||||
w *= quadWeights1DData[qz];
|
||||
}
|
||||
maps.quadWeights[q] = w;
|
||||
}
|
||||
maps.quadWeights.keepInDevice();
|
||||
delete [] quadWeights1DData;
|
||||
}
|
||||
|
||||
return maps;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::GetSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return GetSimplexMaps(device,
|
||||
fe, fe,
|
||||
ir, transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::GetSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
std::stringstream ss;
|
||||
ss << ::occa::hash(device)
|
||||
<< "Simplex"
|
||||
<< "O1:" << trialFE.GetOrder()
|
||||
<< "O2:" << testFE.GetOrder()
|
||||
<< "Q:" << ir.GetNPoints();
|
||||
std::string hash = ss.str();
|
||||
|
||||
// If we've already made the dof-quad maps, reuse them
|
||||
OccaDofQuadMaps &maps = AllDofQuadMaps[hash];
|
||||
if (!maps.hash.size())
|
||||
{
|
||||
// Create the dof-quad maps
|
||||
maps.hash = hash;
|
||||
|
||||
OccaDofQuadMaps trialMaps = GetD2QSimplexMaps(device, trialFE, ir);
|
||||
OccaDofQuadMaps testMaps = GetD2QSimplexMaps(device, testFE , ir, true);
|
||||
|
||||
maps.dofToQuad = trialMaps.dofToQuad;
|
||||
maps.dofToQuadD = trialMaps.dofToQuadD;
|
||||
maps.quadToDof = testMaps.dofToQuad;
|
||||
maps.quadToDofD = testMaps.dofToQuadD;
|
||||
maps.quadWeights = testMaps.quadWeights;
|
||||
}
|
||||
return maps;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps OccaDofQuadMaps::GetD2QSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
const int dims = fe.GetDim();
|
||||
const int numDofs = fe.GetDof();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
OccaDofQuadMaps maps;
|
||||
// Initialize the dof -> quad mapping
|
||||
maps.dofToQuad.allocate(device,
|
||||
numQuad, numDofs);
|
||||
maps.dofToQuadD.allocate(device,
|
||||
dims, numQuad, numDofs);
|
||||
|
||||
if (transpose)
|
||||
{
|
||||
maps.dofToQuad.reindex(1,0);
|
||||
maps.dofToQuadD.reindex(1,0);
|
||||
// Initialize quad weights only for transpose
|
||||
maps.quadWeights.allocate(device,
|
||||
numQuad);
|
||||
}
|
||||
|
||||
mfem::Vector d2q(numDofs);
|
||||
mfem::DenseMatrix d2qD(numDofs, dims);
|
||||
for (int q = 0; q < numQuad; ++q)
|
||||
{
|
||||
const mfem::IntegrationPoint &ip = ir.IntPoint(q);
|
||||
if (transpose)
|
||||
{
|
||||
maps.quadWeights[q] = ip.weight;
|
||||
}
|
||||
fe.CalcShape(ip, d2q);
|
||||
fe.CalcDShape(ip, d2qD);
|
||||
for (int d = 0; d < numDofs; ++d)
|
||||
{
|
||||
const double w = d2q[d];
|
||||
maps.dofToQuad(q, d) = w;
|
||||
for (int dim = 0; dim < dims; ++dim)
|
||||
{
|
||||
const double wD = d2qD(d, dim);
|
||||
maps.dofToQuadD(dim, q, d) = wD;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
maps.dofToQuad.keepInDevice();
|
||||
maps.dofToQuadD.keepInDevice();
|
||||
if (transpose)
|
||||
{
|
||||
maps.quadWeights.keepInDevice();
|
||||
}
|
||||
|
||||
return maps;
|
||||
}
|
||||
|
||||
//---[ Integrator Defines ]-----------
|
||||
std::string stringWithDim(const std::string &s, const int dim)
|
||||
{
|
||||
std::string ret = s;
|
||||
ret += ('0' + (char) dim);
|
||||
ret += 'D';
|
||||
return ret;
|
||||
}
|
||||
|
||||
int closestWarpBatchTo(const int value)
|
||||
{
|
||||
return ((value + 31) / 32) * 32;
|
||||
}
|
||||
|
||||
int closestMultipleWarpBatch(const int multiple, const int maxSize)
|
||||
{
|
||||
if (multiple > maxSize)
|
||||
{
|
||||
return maxSize;
|
||||
}
|
||||
int batch = (32 / multiple);
|
||||
int minDiff = 32 - (multiple * batch);
|
||||
for (int i = 64; i <= maxSize; i += 32)
|
||||
{
|
||||
const int newDiff = i - (multiple * (i / multiple));
|
||||
if (newDiff < minDiff)
|
||||
{
|
||||
batch = (i / multiple);
|
||||
minDiff = newDiff;
|
||||
}
|
||||
}
|
||||
return batch;
|
||||
}
|
||||
|
||||
void SetProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
SetProperties(fespace, fespace, ir, props);
|
||||
}
|
||||
|
||||
void SetProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
props["defines/TRIAL_VDIM"] = trialFESpace.GetVDim();
|
||||
props["defines/TEST_VDIM"] = testFESpace.GetVDim();
|
||||
props["defines/NUM_DIM"] = trialFESpace.GetDim();
|
||||
|
||||
if (trialFESpace.hasTensorBasis())
|
||||
{
|
||||
SetTensorProperties(trialFESpace, testFESpace, ir, props);
|
||||
}
|
||||
else
|
||||
{
|
||||
SetSimplexProperties(trialFESpace, testFESpace, ir, props);
|
||||
}
|
||||
}
|
||||
|
||||
void SetTensorProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
SetTensorProperties(fespace, fespace, ir, props);
|
||||
}
|
||||
|
||||
void SetTensorProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
const mfem::FiniteElement &trialFE = *(trialFESpace.GetFE(0));
|
||||
const mfem::FiniteElement &testFE = *(testFESpace.GetFE(0));
|
||||
|
||||
const mfem::IntegrationRule &ir1D =
|
||||
mfem::IntRules.Get(mfem::Geometry::SEGMENT, ir.GetOrder());
|
||||
|
||||
const int trialDofs = trialFE.GetDof();
|
||||
const int testDofs = testFE.GetDof();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
const int trialDofs1D = trialFE.GetOrder() + 1;
|
||||
const int testDofs1D = testFE.GetOrder() + 1;
|
||||
const int quad1D = ir1D.GetNPoints();
|
||||
int trialDofsND = trialDofs1D;
|
||||
int testDofsND = testDofs1D;
|
||||
int quadND = quad1D;
|
||||
|
||||
const bool trialByVDIM = (trialFESpace.GetOrdering() == mfem::Ordering::byVDIM);
|
||||
const bool testByVDIM = (testFESpace.GetOrdering() == mfem::Ordering::byVDIM);
|
||||
|
||||
props["defines/ORDERING_BY_NODES"] = 0;
|
||||
props["defines/ORDERING_BY_VDIM"] = 1;
|
||||
props["defines/VDIM_ORDERING"] = (int) trialByVDIM;
|
||||
props["defines/TRIAL_ORDERING"] = (int) trialByVDIM;
|
||||
props["defines/TEST_ORDERING"] = (int) testByVDIM;
|
||||
|
||||
props["defines/USING_TENSOR_OPS"] = 1;
|
||||
props["defines/NUM_DOFS"] = trialDofs;
|
||||
props["defines/NUM_QUAD"] = numQuad;
|
||||
|
||||
props["defines/TRIAL_DOFS"] = trialDofs;
|
||||
props["defines/TEST_DOFS"] = testDofs;
|
||||
|
||||
for (int d = 1; d <= 3; ++d)
|
||||
{
|
||||
if (d > 1)
|
||||
{
|
||||
trialDofsND *= trialDofs1D;
|
||||
testDofsND *= testDofs1D;
|
||||
quadND *= quad1D;
|
||||
}
|
||||
props["defines"][stringWithDim("NUM_DOFS_", d)] = trialDofsND;
|
||||
props["defines"][stringWithDim("NUM_QUAD_", d)] = quadND;
|
||||
|
||||
props["defines"][stringWithDim("TRIAL_DOFS_", d)] = trialDofsND;
|
||||
props["defines"][stringWithDim("TEST_DOFS_" , d)] = testDofsND;
|
||||
}
|
||||
|
||||
// 1D Defines
|
||||
const int m1InnerBatch = 32 * ((quad1D + 31) / 32);
|
||||
props["defines/A1_ELEMENT_BATCH"] = closestMultipleWarpBatch(quad1D, 512);
|
||||
props["defines/M1_OUTER_ELEMENT_BATCH"] = closestMultipleWarpBatch(m1InnerBatch,
|
||||
512);
|
||||
props["defines/M1_INNER_ELEMENT_BATCH"] = m1InnerBatch;
|
||||
|
||||
// 2D Defines
|
||||
props["defines/A2_ELEMENT_BATCH"] = 1;
|
||||
props["defines/A2_QUAD_BATCH"] = 1;
|
||||
props["defines/M2_ELEMENT_BATCH"] = 32;
|
||||
|
||||
// 3D Defines
|
||||
const int a3QuadBatch = closestMultipleWarpBatch(quadND, 512);
|
||||
props["defines/A3_ELEMENT_BATCH"] = closestMultipleWarpBatch(a3QuadBatch, 512);
|
||||
props["defines/A3_QUAD_BATCH"] = a3QuadBatch;
|
||||
}
|
||||
|
||||
void SetSimplexProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
SetSimplexProperties(fespace, fespace, ir, props);
|
||||
}
|
||||
|
||||
void SetSimplexProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
const mfem::FiniteElement &trialFE = *(trialFESpace.GetFE(0));
|
||||
const mfem::FiniteElement &testFE = *(testFESpace.GetFE(0));
|
||||
|
||||
const int trialDofs = trialFE.GetDof();
|
||||
const int testDofs = testFE.GetDof();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
const int maxDQ = std::max(std::max(trialDofs, testDofs), numQuad);
|
||||
|
||||
const bool trialByVDIM = (trialFESpace.GetOrdering() == mfem::Ordering::byVDIM);
|
||||
const bool testByVDIM = (testFESpace.GetOrdering() == mfem::Ordering::byVDIM);
|
||||
|
||||
props["defines/ORDERING_BY_NODES"] = 0;
|
||||
props["defines/ORDERING_BY_VDIM"] = 1;
|
||||
props["defines/VDIM_ORDERING"] = (int) trialByVDIM;
|
||||
props["defines/TRIAL_ORDERING"] = (int) trialByVDIM;
|
||||
props["defines/TEST_ORDERING"] = (int) testByVDIM;
|
||||
|
||||
props["defines/USING_TENSOR_OPS"] = 0;
|
||||
props["defines/NUM_DOFS"] = trialDofs;
|
||||
props["defines/NUM_QUAD"] = numQuad;
|
||||
|
||||
props["defines/TRIAL_DOFS"] = trialDofs;
|
||||
props["defines/TEST_DOFS"] = testDofs;
|
||||
|
||||
// 2D Defines
|
||||
const int quadBatch = closestWarpBatchTo(numQuad);
|
||||
props["defines/A2_ELEMENT_BATCH"] = closestMultipleWarpBatch(quadBatch, 2048);
|
||||
props["defines/A2_QUAD_BATCH"] = quadBatch;
|
||||
props["defines/M2_INNER_BATCH"] = closestWarpBatchTo(maxDQ);
|
||||
|
||||
// 3D Defines
|
||||
props["defines/A3_ELEMENT_BATCH"] = closestMultipleWarpBatch(quadBatch, 2048);
|
||||
props["defines/A3_QUAD_BATCH"] = quadBatch;
|
||||
props["defines/M3_INNER_BATCH"] = closestWarpBatchTo(maxDQ);
|
||||
}
|
||||
|
||||
|
||||
//---[ Base Integrator ]--------------
|
||||
OccaIntegrator::OccaIntegrator(const Engine &e)
|
||||
: engine(&e),
|
||||
bform(),
|
||||
mesh(),
|
||||
otrialFESpace(),
|
||||
otestFESpace(),
|
||||
trialFESpace(),
|
||||
testFESpace(),
|
||||
itype(DomainIntegrator),
|
||||
ir(NULL),
|
||||
hasTensorBasis(false) { }
|
||||
|
||||
OccaIntegrator::~OccaIntegrator() {}
|
||||
|
||||
void OccaIntegrator::SetupMaps()
|
||||
{
|
||||
maps = OccaDofQuadMaps::Get(GetDevice(),
|
||||
*otrialFESpace,
|
||||
*otestFESpace,
|
||||
*ir);
|
||||
|
||||
mapsTranspose = OccaDofQuadMaps::Get(GetDevice(),
|
||||
*otestFESpace,
|
||||
*otrialFESpace,
|
||||
*ir);
|
||||
}
|
||||
|
||||
FiniteElementSpace& OccaIntegrator::GetTrialOccaFESpace() const
|
||||
{
|
||||
return *otrialFESpace;
|
||||
}
|
||||
|
||||
FiniteElementSpace& OccaIntegrator::GetTestOccaFESpace() const
|
||||
{
|
||||
return *otestFESpace;
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace& OccaIntegrator::GetTrialFESpace() const
|
||||
{
|
||||
return *trialFESpace;
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace& OccaIntegrator::GetTestFESpace() const
|
||||
{
|
||||
return *testFESpace;
|
||||
}
|
||||
|
||||
void OccaIntegrator::SetIntegrationRule(const mfem::IntegrationRule &ir_)
|
||||
{
|
||||
ir = &ir_;
|
||||
}
|
||||
|
||||
const mfem::IntegrationRule& OccaIntegrator::GetIntegrationRule() const
|
||||
{
|
||||
return *ir;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaIntegrator::GetDofQuadMaps()
|
||||
{
|
||||
return maps;
|
||||
}
|
||||
|
||||
void OccaIntegrator::SetupIntegrator(OccaBilinearForm &bform_,
|
||||
const ::occa::properties &props_,
|
||||
const OccaIntegratorType itype_)
|
||||
{
|
||||
MFEM_ASSERT(engine == &bform_.OccaEngine(), "");
|
||||
bform = &bform_;
|
||||
mesh = &(bform_.GetMesh());
|
||||
|
||||
otrialFESpace = &(bform_.GetTrialOccaFESpace());
|
||||
otestFESpace = &(bform_.GetTestOccaFESpace());
|
||||
|
||||
trialFESpace = &(bform_.GetTrialFESpace());
|
||||
testFESpace = &(bform_.GetTestFESpace());
|
||||
|
||||
hasTensorBasis = otrialFESpace->hasTensorBasis();
|
||||
|
||||
props = props_;
|
||||
itype = itype_;
|
||||
|
||||
if (ir == NULL)
|
||||
{
|
||||
SetupIntegrationRule();
|
||||
}
|
||||
|
||||
SetupMaps();
|
||||
|
||||
SetProperties(*otrialFESpace,
|
||||
*otestFESpace,
|
||||
*ir,
|
||||
props);
|
||||
|
||||
Setup();
|
||||
}
|
||||
|
||||
OccaGeometry OccaIntegrator::GetGeometry(const int flags)
|
||||
{
|
||||
return OccaGeometry::Get(GetDevice(), *otrialFESpace, *ir, flags);
|
||||
}
|
||||
|
||||
::occa::kernel OccaIntegrator::GetAssembleKernel(const ::occa::properties
|
||||
&props)
|
||||
{
|
||||
const mfem::FiniteElement &fe = *(trialFESpace->GetFE(0));
|
||||
return GetKernel(stringWithDim("Assemble", fe.GetDim()),
|
||||
props);
|
||||
}
|
||||
|
||||
::occa::kernel OccaIntegrator::GetMultAddKernel(const ::occa::properties &props)
|
||||
{
|
||||
const mfem::FiniteElement &fe = *(trialFESpace->GetFE(0));
|
||||
return GetKernel(stringWithDim("MultAdd", fe.GetDim()),
|
||||
props);
|
||||
}
|
||||
|
||||
::occa::kernel OccaIntegrator::GetKernel(const std::string &kernelName,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
const std::string filename = GetName() + ".okl";
|
||||
const std::string &okl_path = OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = OccaEngine().GetOklDefines();
|
||||
return GetDevice().buildKernel(okl_path + filename,
|
||||
kernelName,
|
||||
props + okl_defines);
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Diffusion Integrator ]---------
|
||||
OccaDiffusionIntegrator::OccaDiffusionIntegrator(const OccaCoefficient &coeff_)
|
||||
:
|
||||
OccaIntegrator(coeff_.OccaEngine()),
|
||||
coeff(coeff_),
|
||||
assembledOperator(*(new Layout(coeff_.OccaEngine(), 0)))
|
||||
{
|
||||
coeff.SetName("COEFF");
|
||||
}
|
||||
|
||||
OccaDiffusionIntegrator::~OccaDiffusionIntegrator() {}
|
||||
|
||||
|
||||
std::string OccaDiffusionIntegrator::GetName()
|
||||
{
|
||||
return "DiffusionIntegrator";
|
||||
}
|
||||
|
||||
void OccaDiffusionIntegrator::SetupIntegrationRule()
|
||||
{
|
||||
const FiniteElement &trialFE = *(trialFESpace->GetFE(0));
|
||||
const FiniteElement &testFE = *(testFESpace->GetFE(0));
|
||||
ir = &mfem::DiffusionIntegrator::GetRule(trialFE, testFE);
|
||||
}
|
||||
|
||||
void OccaDiffusionIntegrator::Setup()
|
||||
{
|
||||
::occa::properties kernelProps = props;
|
||||
|
||||
coeff.Setup(*this, kernelProps);
|
||||
|
||||
// Setup assemble and mult kernels
|
||||
assembleKernel = GetAssembleKernel(kernelProps);
|
||||
multKernel = GetMultAddKernel(kernelProps);
|
||||
}
|
||||
|
||||
void OccaDiffusionIntegrator::Assemble()
|
||||
{
|
||||
const mfem::FiniteElement &fe = *(trialFESpace->GetFE(0));
|
||||
|
||||
const int dims = fe.GetDim();
|
||||
const int symmDims = (dims * (dims + 1)) / 2; // 1x1: 1, 2x2: 3, 3x3: 6
|
||||
|
||||
const int elements = trialFESpace->GetNE();
|
||||
const int quadraturePoints = ir->GetNPoints();
|
||||
|
||||
OccaGeometry geom = GetGeometry(OccaGeometry::Jacobian);
|
||||
|
||||
assembledOperator.Resize<double>(symmDims * quadraturePoints * elements,
|
||||
NULL);
|
||||
|
||||
assembleKernel((int) mesh->GetNE(),
|
||||
maps.quadWeights,
|
||||
geom.J,
|
||||
coeff,
|
||||
assembledOperator.OccaMem());
|
||||
}
|
||||
|
||||
void OccaDiffusionIntegrator::MultAdd(Vector &x, Vector &y)
|
||||
{
|
||||
// Note: x and y are E-vectors
|
||||
|
||||
multKernel((int) mesh->GetNE(),
|
||||
maps.dofToQuad,
|
||||
maps.dofToQuadD,
|
||||
maps.quadToDof,
|
||||
maps.quadToDofD,
|
||||
assembledOperator.OccaMem(),
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Mass Integrator ]--------------
|
||||
OccaMassIntegrator::OccaMassIntegrator(const OccaCoefficient &coeff_) :
|
||||
OccaIntegrator(coeff_.OccaEngine()),
|
||||
coeff(coeff_),
|
||||
assembledOperator(*(new Layout(coeff_.OccaEngine(), 0)))
|
||||
{
|
||||
coeff.SetName("COEFF");
|
||||
}
|
||||
|
||||
OccaMassIntegrator::~OccaMassIntegrator() {}
|
||||
|
||||
std::string OccaMassIntegrator::GetName()
|
||||
{
|
||||
return "MassIntegrator";
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::SetupIntegrationRule()
|
||||
{
|
||||
const mfem::FiniteElement &trialFE = *(trialFESpace->GetFE(0));
|
||||
const mfem::FiniteElement &testFE = *(testFESpace->GetFE(0));
|
||||
mfem::ElementTransformation &T = *trialFESpace->GetElementTransformation(0);
|
||||
ir = &mfem::MassIntegrator::GetRule(trialFE, testFE, T);
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::Setup()
|
||||
{
|
||||
::occa::properties kernelProps = props;
|
||||
|
||||
coeff.Setup(*this, kernelProps);
|
||||
|
||||
// Setup assemble and mult kernels
|
||||
assembleKernel = GetAssembleKernel(kernelProps);
|
||||
multKernel = GetMultAddKernel(kernelProps);
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::Assemble()
|
||||
{
|
||||
if (assembledOperator.Size())
|
||||
{
|
||||
return;
|
||||
}
|
||||
|
||||
const int elements = trialFESpace->GetNE();
|
||||
const int quadraturePoints = ir->GetNPoints();
|
||||
|
||||
OccaGeometry geom = GetGeometry(OccaGeometry::Jacobian);
|
||||
|
||||
assembledOperator.Resize<double>(quadraturePoints * elements, NULL);
|
||||
|
||||
assembleKernel((int) mesh->GetNE(),
|
||||
maps.quadWeights,
|
||||
geom.J,
|
||||
coeff,
|
||||
assembledOperator.OccaMem());
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::SetOperator(Vector &v)
|
||||
{
|
||||
assembledOperator = v;
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::MultAdd(Vector &x, Vector &y)
|
||||
{
|
||||
multKernel((int) mesh->GetNE(),
|
||||
maps.dofToQuad,
|
||||
maps.dofToQuadD,
|
||||
maps.quadToDof,
|
||||
maps.quadToDofD,
|
||||
assembledOperator.OccaMem(),
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Vector Mass Integrator ]--------------
|
||||
OccaVectorMassIntegrator::OccaVectorMassIntegrator(const OccaCoefficient &
|
||||
coeff_)
|
||||
:
|
||||
OccaIntegrator(coeff_.OccaEngine()),
|
||||
coeff(coeff_),
|
||||
assembledOperator(*(new Layout(coeff_.OccaEngine(), 0)))
|
||||
{
|
||||
coeff.SetName("COEFF");
|
||||
}
|
||||
|
||||
OccaVectorMassIntegrator::~OccaVectorMassIntegrator() {}
|
||||
|
||||
std::string OccaVectorMassIntegrator::GetName()
|
||||
{
|
||||
return "VectorMassIntegrator";
|
||||
}
|
||||
|
||||
void OccaVectorMassIntegrator::SetupIntegrationRule()
|
||||
{
|
||||
const mfem::FiniteElement &trialFE = *(trialFESpace->GetFE(0));
|
||||
const mfem::FiniteElement &testFE = *(testFESpace->GetFE(0));
|
||||
mfem::ElementTransformation &T = *trialFESpace->GetElementTransformation(0);
|
||||
ir = &mfem::MassIntegrator::GetRule(trialFE, testFE, T);
|
||||
}
|
||||
|
||||
void OccaVectorMassIntegrator::Setup()
|
||||
{
|
||||
::occa::properties kernelProps = props;
|
||||
|
||||
coeff.Setup(*this, kernelProps);
|
||||
|
||||
// Setup assemble and mult kernels
|
||||
assembleKernel = GetAssembleKernel(kernelProps);
|
||||
multKernel = GetMultAddKernel(kernelProps);
|
||||
}
|
||||
|
||||
void OccaVectorMassIntegrator::Assemble()
|
||||
{
|
||||
const int elements = trialFESpace->GetNE();
|
||||
const int quadraturePoints = ir->GetNPoints();
|
||||
|
||||
OccaGeometry geom = GetGeometry(OccaGeometry::Jacobian);
|
||||
|
||||
assembledOperator.Resize<double>(quadraturePoints * elements, NULL);
|
||||
|
||||
assembleKernel((int) mesh->GetNE(),
|
||||
maps.quadWeights,
|
||||
geom.J,
|
||||
coeff,
|
||||
assembledOperator.OccaMem());
|
||||
}
|
||||
|
||||
void OccaVectorMassIntegrator::MultAdd(Vector &x, Vector &y)
|
||||
{
|
||||
multKernel((int) mesh->GetNE(),
|
||||
maps.dofToQuad,
|
||||
maps.dofToQuadD,
|
||||
maps.quadToDof,
|
||||
maps.quadToDofD,
|
||||
assembledOperator.OccaMem(),
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,323 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_BILIN_INTEG_HPP
|
||||
#define MFEM_BACKENDS_OCCA_BILIN_INTEG_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "fespace.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "coefficient.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class OccaGeometry
|
||||
{
|
||||
public:
|
||||
::occa::array<double> meshNodes;
|
||||
::occa::array<double> J, invJ, detJ;
|
||||
|
||||
// byVDIM -> [x y z x y z x y z]
|
||||
// byNodes -> [x x x y y y z z z]
|
||||
static const int Jacobian = (1 << 0);
|
||||
static const int JacobianInv = (1 << 1);
|
||||
static const int JacobianDet = (1 << 2);
|
||||
|
||||
static OccaGeometry Get(::occa::device device,
|
||||
FiniteElementSpace &ofespace,
|
||||
const IntegrationRule &ir,
|
||||
const int flags = (Jacobian |
|
||||
JacobianInv |
|
||||
JacobianDet));
|
||||
};
|
||||
|
||||
class OccaDofQuadMaps
|
||||
{
|
||||
private:
|
||||
// Reuse dof-quad maps
|
||||
static std::map<std::string, OccaDofQuadMaps> AllDofQuadMaps;
|
||||
std::string hash;
|
||||
|
||||
public:
|
||||
// Local stiffness matrices (B and B^T operators)
|
||||
::occa::array<double, ::occa::dynamic> dofToQuad, dofToQuadD; // B
|
||||
::occa::array<double, ::occa::dynamic> quadToDof, quadToDofD; // B^T
|
||||
::occa::array<double> quadWeights;
|
||||
|
||||
OccaDofQuadMaps();
|
||||
OccaDofQuadMaps(const OccaDofQuadMaps &maps);
|
||||
OccaDofQuadMaps& operator = (const OccaDofQuadMaps &maps);
|
||||
|
||||
// [[x y] [x y] [x y]]
|
||||
// [[x y z] [x y z] [x y z]]
|
||||
// mfem::GridFunction* mfem::Mesh::GetNodes() { return Nodes; }
|
||||
|
||||
// mfem::FiniteElementSpace *Nodes->FESpace()
|
||||
// 25
|
||||
// 1D [x x x x x x]
|
||||
// 2D [x y x y x y]
|
||||
// GetVdim()
|
||||
// 3D ordering == byVDIM -> [x y z x y z x y z x y z x y z x y z]
|
||||
// ordering == byNODES -> [x x x x x x y y y y y y z z z z z z]
|
||||
static OccaDofQuadMaps& Get(::occa::device device,
|
||||
const FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& Get(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& Get(::occa::device device,
|
||||
const FiniteElementSpace &trialFESpace,
|
||||
const FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& Get(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& GetTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& GetTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps GetD2QTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& GetSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& GetSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps GetD2QSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
};
|
||||
|
||||
//---[ Define Methods ]---------------
|
||||
std::string stringWithDim(const std::string &s, const int dim);
|
||||
int closestWarpBatch(const int multiple, const int maxSize);
|
||||
|
||||
void SetProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetTensorProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetTensorProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetSimplexProperties(FiniteElementSpace &fespace,
|
||||
const IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetSimplexProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
//---[ Base Integrator ]--------------
|
||||
class OccaIntegrator
|
||||
{
|
||||
protected:
|
||||
SharedPtr<const Engine> engine;
|
||||
|
||||
OccaBilinearForm *bform;
|
||||
mfem::Mesh *mesh;
|
||||
|
||||
FiniteElementSpace *otrialFESpace;
|
||||
FiniteElementSpace *otestFESpace;
|
||||
|
||||
mfem::FiniteElementSpace *trialFESpace;
|
||||
mfem::FiniteElementSpace *testFESpace;
|
||||
|
||||
::occa::properties props;
|
||||
OccaIntegratorType itype;
|
||||
|
||||
const IntegrationRule *ir;
|
||||
bool hasTensorBasis;
|
||||
OccaDofQuadMaps maps;
|
||||
OccaDofQuadMaps mapsTranspose;
|
||||
|
||||
public:
|
||||
OccaIntegrator(const Engine &e);
|
||||
virtual ~OccaIntegrator();
|
||||
|
||||
const Engine &OccaEngine() const { return *engine; }
|
||||
|
||||
::occa::device GetDevice(int idx = 0) const
|
||||
{ return engine->GetDevice(idx); }
|
||||
|
||||
virtual std::string GetName() = 0;
|
||||
|
||||
FiniteElementSpace& GetTrialOccaFESpace() const;
|
||||
FiniteElementSpace& GetTestOccaFESpace() const;
|
||||
|
||||
mfem::FiniteElementSpace& GetTrialFESpace() const;
|
||||
mfem::FiniteElementSpace& GetTestFESpace() const;
|
||||
|
||||
void SetIntegrationRule(const mfem::IntegrationRule &ir_);
|
||||
const mfem::IntegrationRule& GetIntegrationRule() const;
|
||||
|
||||
OccaDofQuadMaps& GetDofQuadMaps();
|
||||
|
||||
void SetupMaps();
|
||||
|
||||
virtual void SetupIntegrationRule() = 0;
|
||||
|
||||
virtual void SetupIntegrator(OccaBilinearForm &bform_,
|
||||
const ::occa::properties &props_,
|
||||
const OccaIntegratorType itype_);
|
||||
|
||||
virtual void Setup() = 0;
|
||||
|
||||
virtual void Assemble() = 0;
|
||||
/// This method works on E-vectors!
|
||||
virtual void MultAdd(Vector &x, Vector &y) = 0;
|
||||
|
||||
virtual void MultTransposeAdd(Vector &x, Vector &y)
|
||||
{
|
||||
mfem_error("OccaIntegrator::MultTransposeAdd() is not overloaded!");
|
||||
}
|
||||
|
||||
OccaGeometry GetGeometry(const int flags = (OccaGeometry::Jacobian |
|
||||
OccaGeometry::JacobianInv |
|
||||
OccaGeometry::JacobianDet));
|
||||
|
||||
::occa::kernel GetAssembleKernel(const ::occa::properties &props);
|
||||
::occa::kernel GetMultAddKernel(const ::occa::properties &props);
|
||||
|
||||
::occa::kernel GetKernel(const std::string &kernelName,
|
||||
const ::occa::properties &props);
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Diffusion Integrator ]---------
|
||||
class OccaDiffusionIntegrator : public OccaIntegrator
|
||||
{
|
||||
private:
|
||||
OccaCoefficient coeff;
|
||||
|
||||
::occa::kernel assembleKernel, multKernel;
|
||||
|
||||
Vector assembledOperator;
|
||||
|
||||
public:
|
||||
OccaDiffusionIntegrator(const OccaCoefficient &coeff_);
|
||||
virtual ~OccaDiffusionIntegrator();
|
||||
|
||||
virtual std::string GetName();
|
||||
|
||||
virtual void SetupIntegrationRule();
|
||||
|
||||
virtual void Setup();
|
||||
|
||||
virtual void Assemble();
|
||||
virtual void MultAdd(Vector &x, Vector &y);
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Mass Integrator ]--------------
|
||||
class OccaMassIntegrator : public OccaIntegrator
|
||||
{
|
||||
private:
|
||||
OccaCoefficient coeff;
|
||||
|
||||
::occa::kernel assembleKernel, multKernel;
|
||||
|
||||
Vector assembledOperator;
|
||||
|
||||
public:
|
||||
OccaMassIntegrator(const OccaCoefficient &coeff_);
|
||||
virtual ~OccaMassIntegrator();
|
||||
|
||||
virtual std::string GetName();
|
||||
|
||||
virtual void SetupIntegrationRule();
|
||||
|
||||
virtual void Setup();
|
||||
|
||||
virtual void Assemble();
|
||||
void SetOperator(Vector &v);
|
||||
|
||||
virtual void MultAdd(Vector &x, Vector &y);
|
||||
};
|
||||
//====================================
|
||||
|
||||
//---[ Vector Mass Integrator ]--------------
|
||||
class OccaVectorMassIntegrator : public OccaIntegrator
|
||||
{
|
||||
private:
|
||||
OccaCoefficient coeff;
|
||||
|
||||
::occa::kernel assembleKernel, multKernel;
|
||||
|
||||
Vector assembledOperator;
|
||||
|
||||
public:
|
||||
OccaVectorMassIntegrator(const OccaCoefficient &coeff_);
|
||||
virtual ~OccaVectorMassIntegrator();
|
||||
|
||||
virtual std::string GetName();
|
||||
|
||||
virtual void SetupIntegrationRule();
|
||||
|
||||
virtual void Setup();
|
||||
|
||||
virtual void Assemble();
|
||||
|
||||
virtual void MultAdd(Vector &x, Vector &y);
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_BILIN_INTEG_HPP
|
||||
@@ -0,0 +1,344 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "coefficient.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
//---[ Parameter ]------------
|
||||
OccaParameter::~OccaParameter() {}
|
||||
|
||||
void OccaParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props) {}
|
||||
|
||||
::occa::kernelArg OccaParameter::KernelArgs()
|
||||
{
|
||||
return ::occa::kernelArg();
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Include Parameter ]------------
|
||||
OccaIncludeParameter::OccaIncludeParameter(const std::string &filename_) :
|
||||
filename(filename_) {}
|
||||
|
||||
OccaParameter* OccaIncludeParameter::Clone()
|
||||
{
|
||||
return new OccaIncludeParameter(filename);
|
||||
}
|
||||
|
||||
void OccaIncludeParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
props["headers"].asArray() += "#include " + filename;
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Source Parameter ]------------
|
||||
OccaSourceParameter::OccaSourceParameter(const std::string &source_) :
|
||||
source(source_) {}
|
||||
|
||||
OccaParameter* OccaSourceParameter::Clone()
|
||||
{
|
||||
return new OccaSourceParameter(source);
|
||||
}
|
||||
|
||||
void OccaSourceParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
props["headers"].asArray() += source;
|
||||
}
|
||||
//====================================
|
||||
|
||||
//---[ Vector Parameter ]-------
|
||||
OccaVectorParameter::OccaVectorParameter(const std::string &name_,
|
||||
Vector &v_,
|
||||
const bool useRestrict_) :
|
||||
name(name_),
|
||||
v(v_),
|
||||
useRestrict(useRestrict_),
|
||||
attr("") {}
|
||||
|
||||
OccaVectorParameter::OccaVectorParameter(const std::string &name_,
|
||||
Vector &v_,
|
||||
const std::string &attr_,
|
||||
const bool useRestrict_) :
|
||||
name(name_),
|
||||
v(v_),
|
||||
useRestrict(useRestrict_),
|
||||
attr(attr_) {}
|
||||
|
||||
OccaParameter* OccaVectorParameter::Clone()
|
||||
{
|
||||
return new OccaVectorParameter(name, v, attr, useRestrict);
|
||||
}
|
||||
|
||||
void OccaVectorParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
std::string &args = (props["defines/COEFF_ARGS"]
|
||||
.asString()
|
||||
.string());
|
||||
args += "const double *";
|
||||
if (useRestrict)
|
||||
{
|
||||
args += " restrict ";
|
||||
}
|
||||
args += name;
|
||||
if (attr.size())
|
||||
{
|
||||
args += ' ';
|
||||
args += attr;
|
||||
}
|
||||
args += ",\n";
|
||||
}
|
||||
|
||||
::occa::kernelArg OccaVectorParameter::KernelArgs()
|
||||
{
|
||||
return ::occa::kernelArg(v.OccaMem());
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ GridFunction Parameter ]-------
|
||||
OccaGridFunctionParameter::OccaGridFunctionParameter(const std::string &name_,
|
||||
OccaGridFunction &gf_,
|
||||
const bool useRestrict_)
|
||||
: name(name_),
|
||||
gf(gf_),
|
||||
gfQuad(*(new Layout(gf_.OccaLayout().OccaEngine(), 0))),
|
||||
useRestrict(useRestrict_) {}
|
||||
|
||||
OccaParameter* OccaGridFunctionParameter::Clone()
|
||||
{
|
||||
OccaGridFunctionParameter *param =
|
||||
new OccaGridFunctionParameter(name, gf, useRestrict);
|
||||
param->gfQuad.MakeRef(gfQuad);
|
||||
return param;
|
||||
}
|
||||
|
||||
void OccaGridFunctionParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
|
||||
std::string &args = (props["defines/COEFF_ARGS"]
|
||||
.asString()
|
||||
.string());
|
||||
args += "const double *";
|
||||
if (useRestrict)
|
||||
{
|
||||
args += " restrict ";
|
||||
}
|
||||
args += name;
|
||||
args += " @dim(NUM_QUAD, numElements),\n";
|
||||
|
||||
gf.ToQuad(integ.GetIntegrationRule(), gfQuad);
|
||||
}
|
||||
|
||||
::occa::kernelArg OccaGridFunctionParameter::KernelArgs()
|
||||
{
|
||||
return gfQuad.OccaMem();
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Coefficient ]------------------
|
||||
OccaCoefficient::OccaCoefficient(const Engine &e, const double value) :
|
||||
engine(&e),
|
||||
integ(NULL),
|
||||
name("COEFF")
|
||||
{
|
||||
coeffValue = value;
|
||||
}
|
||||
|
||||
OccaCoefficient::OccaCoefficient(const Engine &e, const std::string &source) :
|
||||
engine(&e),
|
||||
integ(NULL),
|
||||
name("COEFF")
|
||||
{
|
||||
coeffValue = source;
|
||||
}
|
||||
|
||||
OccaCoefficient::OccaCoefficient(const Engine &e, const char *source) :
|
||||
engine(&e),
|
||||
integ(NULL),
|
||||
name("COEFF")
|
||||
{
|
||||
coeffValue = source;
|
||||
}
|
||||
|
||||
OccaCoefficient::OccaCoefficient(const OccaCoefficient &coeff) :
|
||||
engine(coeff.engine),
|
||||
integ(NULL),
|
||||
name(coeff.name),
|
||||
coeffValue(coeff.coeffValue)
|
||||
{
|
||||
|
||||
const int paramCount = (int) coeff.params.size();
|
||||
for (int i = 0; i < paramCount; ++i)
|
||||
{
|
||||
params.push_back(coeff.params[i]->Clone());
|
||||
}
|
||||
}
|
||||
|
||||
OccaCoefficient::~OccaCoefficient()
|
||||
{
|
||||
const int paramCount = (int) params.size();
|
||||
for (int i = 0; i < paramCount; ++i)
|
||||
{
|
||||
delete params[i];
|
||||
}
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::SetName(const std::string &name_)
|
||||
{
|
||||
name = name_;
|
||||
return *this;
|
||||
}
|
||||
|
||||
void OccaCoefficient::Setup(OccaIntegrator &integ_,
|
||||
::occa::properties &props_)
|
||||
{
|
||||
integ = &integ_;
|
||||
|
||||
const int paramCount = (int) params.size();
|
||||
props_["defines"][name + "_ARGS"] = "";
|
||||
for (int i = 0; i < paramCount; ++i)
|
||||
{
|
||||
params[i]->Setup(integ_, props_);
|
||||
}
|
||||
props_["defines"][name] = coeffValue;
|
||||
|
||||
props = props_;
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::Add(OccaParameter *param)
|
||||
{
|
||||
params.push_back(param);
|
||||
return *this;
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::IncludeHeader(const std::string &filename)
|
||||
{
|
||||
return Add(new OccaIncludeParameter(filename));
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::IncludeSource(const std::string &source)
|
||||
{
|
||||
return Add(new OccaSourceParameter(source));
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::AddVector(const std::string &name_,
|
||||
Vector &v,
|
||||
const bool useRestrict)
|
||||
{
|
||||
return Add(new OccaVectorParameter(name_, v, useRestrict));
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::AddVector(const std::string &name_,
|
||||
Vector &v,
|
||||
const std::string &attr,
|
||||
const bool useRestrict)
|
||||
{
|
||||
return Add(new OccaVectorParameter(name_, v, attr, useRestrict));
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::AddGridFunction(const std::string &name_,
|
||||
OccaGridFunction &gf,
|
||||
const bool useRestrict)
|
||||
{
|
||||
return Add(new OccaGridFunctionParameter(name_, gf, useRestrict));
|
||||
}
|
||||
|
||||
bool OccaCoefficient::IsConstant()
|
||||
{
|
||||
return coeffValue.isNumber();
|
||||
}
|
||||
|
||||
double OccaCoefficient::GetConstantValue()
|
||||
{
|
||||
if (!IsConstant())
|
||||
{
|
||||
mfem_error("OccaCoefficient is not constant");
|
||||
}
|
||||
return coeffValue.number();
|
||||
}
|
||||
|
||||
Vector OccaCoefficient::Eval()
|
||||
{
|
||||
if (integ == NULL)
|
||||
{
|
||||
mfem_error("OccaCoefficient requires a Setup() call before Eval()");
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace &fespace = integ->GetTrialFESpace();
|
||||
const mfem::IntegrationRule &ir = integ->GetIntegrationRule();
|
||||
|
||||
const int elements = fespace.GetNE();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
Vector quadCoeff(*(new Layout(OccaEngine(), numQuad * elements)));
|
||||
Eval(quadCoeff);
|
||||
return quadCoeff;
|
||||
}
|
||||
|
||||
void OccaCoefficient::Eval(Vector &quadCoeff)
|
||||
{
|
||||
const std::string &okl_path = OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = OccaEngine().GetOklDefines();
|
||||
static ::occa::kernelBuilder builder =
|
||||
::occa::kernelBuilder::fromFile(okl_path + "coefficient.okl",
|
||||
"CoefficientEval", okl_defines);
|
||||
|
||||
if (integ == NULL)
|
||||
{
|
||||
mfem_error("OccaCoefficient requires a Setup() call before Eval()");
|
||||
}
|
||||
|
||||
const int elements = integ->GetTrialFESpace().GetNE();
|
||||
|
||||
::occa::properties kernelProps = props;
|
||||
if (name != "COEFF")
|
||||
{
|
||||
kernelProps["defines/COEFF"] = name;
|
||||
kernelProps["defines/COEFF_ARGS"] = name + "_ARGS";
|
||||
}
|
||||
kernelProps += okl_defines;
|
||||
|
||||
::occa::kernel evalKernel = builder.build(GetDevice(), kernelProps);
|
||||
evalKernel(elements, *this, quadCoeff.OccaMem());
|
||||
}
|
||||
|
||||
OccaCoefficient::operator ::occa::kernelArg ()
|
||||
{
|
||||
::occa::kernelArg kArg;
|
||||
const int paramCount = (int) params.size();
|
||||
for (int i = 0; i < paramCount; ++i)
|
||||
{
|
||||
kArg.add(params[i]->KernelArgs());
|
||||
}
|
||||
return kArg;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,284 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_COEFFICIENT_HPP
|
||||
#define MFEM_BACKENDS_OCCA_COEFFICIENT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class OccaIntegrator;
|
||||
|
||||
|
||||
class OccaParameter
|
||||
{
|
||||
public:
|
||||
virtual ~OccaParameter();
|
||||
|
||||
virtual OccaParameter* Clone() = 0;
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
|
||||
virtual ::occa::kernelArg KernelArgs();
|
||||
};
|
||||
|
||||
|
||||
//---[ Include Parameter ]------------
|
||||
class OccaIncludeParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
std::string filename;
|
||||
|
||||
public:
|
||||
OccaIncludeParameter(const std::string &filename_);
|
||||
|
||||
virtual OccaParameter* Clone();
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Source Parameter ]------------
|
||||
class OccaSourceParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
std::string source;
|
||||
|
||||
public:
|
||||
OccaSourceParameter(const std::string &filename_);
|
||||
|
||||
virtual OccaParameter* Clone();
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Define Parameter ]------------
|
||||
template <class TM>
|
||||
class OccaDefineParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
const std::string name;
|
||||
TM value;
|
||||
|
||||
public:
|
||||
OccaDefineParameter(const std::string &name_,
|
||||
const TM &value_) :
|
||||
name(name_),
|
||||
value(value_) {}
|
||||
|
||||
virtual OccaParameter* Clone()
|
||||
{
|
||||
return new OccaDefineParameter(name, value);
|
||||
}
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
props["defines"][name] = value;
|
||||
}
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Variable Parameter ]-----------
|
||||
template <class TM>
|
||||
class OccaVariableParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
const std::string name;
|
||||
const TM &value;
|
||||
|
||||
public:
|
||||
OccaVariableParameter(const std::string &name_,
|
||||
const TM &value_) :
|
||||
name(name_),
|
||||
value(value_) {}
|
||||
|
||||
virtual OccaParameter* Clone()
|
||||
{
|
||||
return new OccaVariableParameter(name, value);
|
||||
}
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
std::string &args = (props["defines/COEFF_ARGS"]
|
||||
.asString()
|
||||
.string());
|
||||
// const TM name,\n"
|
||||
args += "const ";
|
||||
args += ::occa::primitiveinfo<TM>::name;
|
||||
args += ' ';
|
||||
args += name;
|
||||
args += ",\n";
|
||||
}
|
||||
|
||||
virtual ::occa::kernelArg KernelArgs()
|
||||
{
|
||||
return ::occa::kernelArg(value);
|
||||
}
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Vector Parameter ]-------
|
||||
class OccaVectorParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
const std::string name;
|
||||
Vector v;
|
||||
bool useRestrict;
|
||||
std::string attr;
|
||||
|
||||
public:
|
||||
OccaVectorParameter(const std::string &name_,
|
||||
Vector &v_,
|
||||
const bool useRestrict_ = false);
|
||||
|
||||
OccaVectorParameter(const std::string &name_,
|
||||
Vector &v_,
|
||||
const std::string &attr_,
|
||||
const bool useRestrict_ = false);
|
||||
|
||||
virtual OccaParameter* Clone();
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
|
||||
virtual ::occa::kernelArg KernelArgs();
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ GridFunction Parameter ]-------
|
||||
class OccaGridFunctionParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
const std::string name;
|
||||
OccaGridFunction &gf;
|
||||
Vector gfQuad;
|
||||
bool useRestrict;
|
||||
|
||||
public:
|
||||
OccaGridFunctionParameter(const std::string &name_,
|
||||
OccaGridFunction &gf_,
|
||||
const bool useRestrict_ = false);
|
||||
|
||||
virtual OccaParameter* Clone();
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
|
||||
virtual ::occa::kernelArg KernelArgs();
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Coefficient ]------------------
|
||||
// [MISSING]
|
||||
// Needs to know about the integrator's
|
||||
// - fespace
|
||||
// - ir
|
||||
// Step where parameters that need the ir get called for setup
|
||||
// For example, GridFunction (d, e) -> (q, e)
|
||||
class OccaCoefficient
|
||||
{
|
||||
private:
|
||||
SharedPtr<const Engine> engine;
|
||||
|
||||
OccaIntegrator *integ;
|
||||
|
||||
std::string name;
|
||||
::occa::json coeffValue;
|
||||
|
||||
::occa::properties props;
|
||||
std::vector<OccaParameter*> params;
|
||||
|
||||
public:
|
||||
OccaCoefficient(const Engine &e, const double value = 1.0);
|
||||
OccaCoefficient(const Engine &e, const std::string &source);
|
||||
OccaCoefficient(const Engine &e, const char *source);
|
||||
~OccaCoefficient();
|
||||
|
||||
OccaCoefficient(const OccaCoefficient &coeff);
|
||||
|
||||
const Engine &OccaEngine() const { return *engine; }
|
||||
|
||||
::occa::device GetDevice(int idx = 0) const
|
||||
{ return engine->GetDevice(idx); }
|
||||
|
||||
OccaCoefficient& SetName(const std::string &name_);
|
||||
|
||||
void Setup(OccaIntegrator &integ_,
|
||||
::occa::properties &props_);
|
||||
|
||||
OccaCoefficient& Add(OccaParameter *param);
|
||||
|
||||
OccaCoefficient& IncludeHeader(const std::string &filename);
|
||||
OccaCoefficient& IncludeSource(const std::string &source);
|
||||
|
||||
template <class TM>
|
||||
OccaCoefficient& AddDefine(const std::string &name_, const TM &value)
|
||||
{
|
||||
return Add(new OccaDefineParameter<TM>(name_, value));
|
||||
}
|
||||
|
||||
template <class TM>
|
||||
OccaCoefficient& AddVariable(const std::string &name_, const TM &value)
|
||||
{
|
||||
return Add(new OccaVariableParameter<TM>(name_, value));
|
||||
}
|
||||
|
||||
OccaCoefficient& AddVector(const std::string &name_,
|
||||
Vector &v,
|
||||
const bool useRestrict = false);
|
||||
|
||||
|
||||
OccaCoefficient& AddVector(const std::string &name_,
|
||||
Vector &v,
|
||||
const std::string &attr,
|
||||
const bool useRestrict = false);
|
||||
|
||||
OccaCoefficient& AddGridFunction(const std::string &name_,
|
||||
OccaGridFunction &gf,
|
||||
const bool useRestrict = false);
|
||||
|
||||
bool IsConstant();
|
||||
double GetConstantValue();
|
||||
|
||||
Vector Eval();
|
||||
void Eval(Vector &quadCoeff);
|
||||
|
||||
operator ::occa::kernelArg ();
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_COEFFICIENT_HPP
|
||||
@@ -0,0 +1,40 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_OCCA_DEFINES
|
||||
#define MFEM_OCCA_DEFINES
|
||||
|
||||
#ifndef USING_TENSOR_OPS
|
||||
# define USING_TENSOR_OPS 0
|
||||
#endif
|
||||
|
||||
#ifdef OCCA_USING_GPU
|
||||
# define GPU_ORDER_2(I0, I1) @dimOrder(I0, I1)
|
||||
# define GPU_ORDER_3(I0, I1, I2) @dimOrder(I0, I1, I2)
|
||||
# define GPU_ORDER_4(I0, I1, I2, I3) @dimOrder(I0, I1, I2, I3)
|
||||
#else
|
||||
# define GPU_ORDER_2(I0, I1) @dimOrder(0, 1)
|
||||
# define GPU_ORDER_3(I0, I1, I2) @dimOrder(0, 1, 2)
|
||||
# define GPU_ORDER_4(I0, I1, I2, I3) @dimOrder(0, 1, 2, 3)
|
||||
#endif
|
||||
|
||||
#ifndef COEFF
|
||||
# define COEFF 1.0
|
||||
# define COEFF_ARGS
|
||||
#endif
|
||||
|
||||
#if USING_TENSOR_OPS
|
||||
# include "mfem-occa://defines/tensor.okl"
|
||||
#else
|
||||
# include "mfem-occa://defines/simplex.okl"
|
||||
#endif
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,40 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#define USING_LOW_ORDER 1
|
||||
#define USING_HI_ORDER 0
|
||||
|
||||
typedef double* DofToQuad_t @dim(NUM_QUAD, NUM_DOFS);
|
||||
typedef double* DofToQuadD2D_t @dim(2, NUM_QUAD, NUM_DOFS);
|
||||
typedef double* DofToQuadD3D_t @dim(3, NUM_QUAD, NUM_DOFS);
|
||||
|
||||
typedef double* QuadToDof_t @dim(NUM_DOFS, NUM_QUAD);
|
||||
typedef double* QuadToDofD2D_t @dim(2, NUM_DOFS, NUM_QUAD);
|
||||
typedef double* QuadToDofD3D_t @dim(3, NUM_DOFS, NUM_QUAD);
|
||||
|
||||
typedef double* Jacobian2D_t @dim(2, 2, NUM_QUAD, numElements);
|
||||
typedef double* Jacobian3D_t @dim(3, 3, NUM_QUAD, numElements);
|
||||
|
||||
typedef double* SymmOperator2D_t @dim(3, NUM_QUAD, numElements);
|
||||
typedef double* SymmOperator3D_t @dim(6, NUM_QUAD, numElements);
|
||||
|
||||
typedef double* DLocal_t @dim(NUM_DOFS, numElements);
|
||||
typedef double* QLocal_t @dim(NUM_QUAD, numElements);
|
||||
|
||||
#if VDIM_ORDERING == ORDERING_BY_VDIM
|
||||
typedef double* DVLocal_t @dim(NUM_VDIM, NUM_DOFS, numElements);
|
||||
typedef double* QVLocal_t @dim(NUM_VDIM, NUM_QUAD, numElements);
|
||||
#else
|
||||
typedef double* DVLocal_t @dim(NUM_VDIM, NUM_DOFS, numElements) @dimOrder(2,0,1);
|
||||
typedef double* QVLocal_t @dim(NUM_VDIM, NUM_QUAD, numElements) @dimOrder(2,0,1);
|
||||
#endif
|
||||
|
||||
typedef int* DLocalMap_t @dim(NUM_DOFS, numElements);
|
||||
@@ -0,0 +1,85 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#if NUM_QUAD_1D < NUM_DOFS_1D
|
||||
# define NUM_MAX_1D NUM_DOFS_1D
|
||||
#else
|
||||
# define NUM_MAX_1D NUM_QUAD_1D
|
||||
#endif
|
||||
|
||||
#define NUM_MAX_2D (NUM_MAX_1D * NUM_MAX_1D)
|
||||
|
||||
#define NUM_QUAD_DOFS_1D (NUM_QUAD_1D * NUM_DOFS_1D)
|
||||
|
||||
#define QUAD_2D_ID(X, Y) (X + ((Y) * NUM_QUAD_1D))
|
||||
#define DOFS_2D_ID(X, Y) (X + ((Y) * NUM_DOFS_1D))
|
||||
|
||||
#define QUAD_3D_ID(X, Y, Z) (X + ((Y) * NUM_QUAD_1D) + ((Z) * NUM_QUAD_2D))
|
||||
#define DOFS_3D_ID(X, Y, Z) (X + ((Y) * NUM_DOFS_1D) + ((Z) * NUM_DOFS_2D))
|
||||
|
||||
#if NUM_MAX_1D < 8
|
||||
# define USING_LOW_ORDER 1
|
||||
# define USING_HI_ORDER 0
|
||||
#else
|
||||
# define USING_LOW_ORDER 0
|
||||
# define USING_HI_ORDER 1
|
||||
#endif
|
||||
|
||||
#define M1_ELEMENT_BATCHES (M1_OUTER_ELEMENT_BATCH * M1_INNER_ELEMENT_BATCH)
|
||||
|
||||
typedef double* DofToQuad_t @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
typedef double* QuadToDof_t @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
typedef double* Jacobian_t @dim(NUM_DIM, NUM_DIM, numElements);
|
||||
typedef double* Jacobian1D_t @dim(NUM_QUAD_1D, numElements);
|
||||
typedef double* Jacobian2D_t @dim(2, 2, NUM_QUAD_2D, numElements);
|
||||
typedef double* Jacobian3D_t @dim(3, 3, NUM_QUAD_3D, numElements);
|
||||
|
||||
typedef double* SymmOperator1D_t @dim(NUM_QUAD_1D, numElements);
|
||||
typedef double* SymmOperator2D_t @dim(3, NUM_QUAD_2D, numElements);
|
||||
typedef double* SymmOperator3D_t @dim(6, NUM_QUAD_3D, numElements);
|
||||
|
||||
typedef double* DLocal_t @dim(NUM_DOFS, numElements);
|
||||
typedef double* DLocal1D_t @dim(NUM_DOFS_1D, numElements);
|
||||
typedef double* DLocal2D_t @dim(NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
typedef double* DLocal3D_t @dim(NUM_DOFS_1D, NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
|
||||
typedef double* QLocal_t @dim(NUM_QUAD, numElements);
|
||||
typedef double* QLocal1D_t @dim(NUM_QUAD_1D, numElements);
|
||||
typedef double* QLocal2D_t @dim(NUM_QUAD_1D, NUM_QUAD_1D, numElements);
|
||||
typedef double* QLocal3D_t @dim(NUM_QUAD_1D, NUM_QUAD_1D, NUM_QUAD_1D, numElements);
|
||||
|
||||
#if VDIM_ORDERING == ORDERING_BY_VDIM
|
||||
typedef double* DVLocal_t @dim(NUM_VDIM, NUM_DOFS, numElements);
|
||||
typedef double* DVLocal1D_t @dim(NUM_VDIM, NUM_DOFS_1D, numElements);
|
||||
typedef double* DVLocal2D_t @dim(NUM_VDIM, NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
typedef double* DVLocal3D_t @dim(NUM_VDIM, NUM_DOFS_1D, NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
|
||||
typedef double* QVLocal_t @dim(NUM_VDIM, NUM_QUAD, numElements);
|
||||
typedef double* QVLocal1D_t @dim(NUM_VDIM, NUM_QUAD_1D, numElements);
|
||||
typedef double* QVLocal2D_t @dim(NUM_VDIM, NUM_QUAD_1D, NUM_QUAD_1D, numElements);
|
||||
typedef double* QVLocal3D_t @dim(NUM_VDIM, NUM_QUAD_1D, NUM_QUAD_1D, NUM_QUAD_1D, numElements);
|
||||
#else
|
||||
typedef double* DVLocal_t @dim(NUM_VDIM, NUM_DOFS, numElements) @dimOrder(2,0,1);
|
||||
typedef double* DVLocal1D_t @dim(NUM_VDIM, NUM_DOFS_1D, numElements) @dimOrder(2,0,1);
|
||||
typedef double* DVLocal2D_t @dim(NUM_VDIM, NUM_DOFS_1D, NUM_DOFS_1D, numElements) @dimOrder(3,0,1,2);
|
||||
typedef double* DVLocal3D_t @dim(NUM_VDIM, NUM_DOFS_1D, NUM_DOFS_1D, NUM_DOFS_1D, numElements) @dimOrder(4,0,1,2,3);
|
||||
|
||||
typedef double* QVLocal_t @dim(NUM_VDIM, NUM_QUAD, numElements) @dimOrder(2,0,1);
|
||||
typedef double* QVLocal1D_t @dim(NUM_VDIM, NUM_QUAD_1D, numElements) @dimOrder(2,0,1);
|
||||
typedef double* QVLocal2D_t @dim(NUM_VDIM, NUM_QUAD_1D, NUM_QUAD_1D, numElements) @dimOrder(3,0,1,2);
|
||||
typedef double* QVLocal3D_t @dim(NUM_VDIM, NUM_QUAD_1D, NUM_QUAD_1D, NUM_QUAD_1D, numElements) @dimOrder(4,0,1,2,3);
|
||||
#endif
|
||||
|
||||
typedef int* DLocalMap_t @dim(NUM_DOFS, numElements);
|
||||
typedef int* DLocalMap1D_t @dim(NUM_DOFS_1D, numElements);
|
||||
typedef int* DLocalMap2D_t @dim(NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
typedef int* DLocalMap3D_t @dim(NUM_DOFS_1D, NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
@@ -0,0 +1,168 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
const double * restrict quadWeights,
|
||||
const Jacobian2D_t restrict J,
|
||||
COEFF_ARGS
|
||||
SymmOperator2D_t restrict oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / ((J11 * J22) - (J21 * J12));
|
||||
|
||||
oper(0, q, e) = c_detJ * (J12*J12 + J22*J22); // (1,1)
|
||||
oper(1, q, e) = -c_detJ * (J12*J11 + J22*J21); // (1,2) + (2,1)
|
||||
oper(2, q, e) = c_detJ * (J11*J11 + J21*J21); // (2,2)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuadD2D_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDofD2D_t restrict quadToDofD,
|
||||
const SymmOperator2D_t restrict oper,
|
||||
const DLocal_t restrict solIn,
|
||||
DLocal_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double r_sol[NUM_DOFS];
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] = 0;
|
||||
}
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
double gradX = 0, gradY = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double s = solIn(d, e);
|
||||
gradX += s * quadToDofD(0, d, q);
|
||||
gradY += s * quadToDofD(1, d, q);
|
||||
}
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O22 = oper(2, q, e);
|
||||
|
||||
const double gradX2 = (O11 * gradX) + (O12 * gradY);
|
||||
const double gradY2 = (O12 * gradX) + (O22 * gradY);
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] += ((gradX2 * quadToDofD(0, d, q)) +
|
||||
(gradY2 * quadToDofD(1, d, q)));
|
||||
}
|
||||
}
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
solOut(d, e) += r_sol[d];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
const double * restrict quadWeights,
|
||||
const Jacobian3D_t restrict J,
|
||||
COEFF_ARGS
|
||||
SymmOperator3D_t restrict oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / detJ;
|
||||
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J23 * J31) - (J21 * J33);
|
||||
const double A13 = (J21 * J32) - (J22 * J31);
|
||||
|
||||
const double A21 = (J13 * J32) - (J12 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J12 * J31) - (J11 * J32);
|
||||
|
||||
const double A31 = (J12 * J23) - (J13 * J22);
|
||||
const double A32 = (J13 * J21) - (J11 * J23);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
// adj(J)^Tadj(J)
|
||||
oper(0, q, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
oper(1, q, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2) + (2,1)
|
||||
oper(2, q, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3) + (3,1)
|
||||
oper(3, q, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
oper(4, q, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3) + (3,2)
|
||||
oper(5, q, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuadD3D_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDofD3D_t restrict quadToDofD,
|
||||
const SymmOperator3D_t restrict oper,
|
||||
const DLocal_t restrict solIn,
|
||||
DLocal_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double r_sol[NUM_DOFS];
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] = 0;
|
||||
}
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
double gradX = 0, gradY = 0, gradZ = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double s = solIn(d, e);
|
||||
gradX += s * quadToDofD(0, d, q);
|
||||
gradY += s * quadToDofD(1, d, q);
|
||||
gradZ += s * quadToDofD(2, d, q);
|
||||
}
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O13 = oper(2, q, e);
|
||||
const double O22 = oper(3, q, e);
|
||||
const double O23 = oper(4, q, e);
|
||||
const double O33 = oper(5, q, e);
|
||||
|
||||
const double gradX2 = (O11 * gradX) + (O12 * gradY) + (O13 * gradZ);
|
||||
const double gradY2 = (O12 * gradX) + (O22 * gradY) + (O23 * gradZ);
|
||||
const double gradZ2 = (O13 * gradX) + (O23 * gradY) + (O33 * gradZ);
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] += ((gradX2 * quadToDofD(0, d, q)) +
|
||||
(gradY2 * quadToDofD(1, d, q)) +
|
||||
(gradZ2 * quadToDofD(2, d, q)));
|
||||
}
|
||||
}
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
solOut(d, e) += r_sol[d];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,182 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian2D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator2D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A2_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A2_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A2_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += A2_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / ((J11 * J22) - (J21 * J12));
|
||||
|
||||
oper(0, q, e) = c_detJ * (J12*J12 + J22*J22); // (1,1)
|
||||
oper(1, q, e) = -c_detJ * (J12*J11 + J22*J21); // (1,2) + (2,1)
|
||||
oper(2, q, e) = c_detJ * (J11*J11 + J21*J21); // (2,2)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuadD2D_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDofD2D_t restrict quadToDofD,
|
||||
const SymmOperator2D_t restrict oper,
|
||||
const DLocal_t restrict solIn,
|
||||
DLocal_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_gradX[NUM_QUAD];
|
||||
@shared double s_gradY[NUM_QUAD];
|
||||
|
||||
for (int qOff = 0; qOff < M2_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M2_INNER_BATCH) {
|
||||
double gradX = 0, gradY = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double s = solIn(d, e);
|
||||
gradX += s * quadToDofD(0, d, q);
|
||||
gradY += s * quadToDofD(1, d, q);
|
||||
}
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O22 = oper(2, q, e);
|
||||
|
||||
s_gradX[q] = (O11 * gradX) + (O12 * gradY);
|
||||
s_gradY[q] = (O12 * gradX) + (O22 * gradY);
|
||||
}
|
||||
}
|
||||
|
||||
for (int dOff = 0; dOff < M2_INNER_BATCH; ++dOff) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M2_INNER_BATCH) {
|
||||
double r_sol = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
// FIXME: s_gradX and s_gradY are @shared used outside of @inner
|
||||
r_sol += ((s_gradX[q] * quadToDofD(0, d, q)) +
|
||||
(s_gradY[q] * quadToDofD(1, d, q)));
|
||||
}
|
||||
solOut(d, e) += r_sol;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian3D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator3D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A3_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A3_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A3_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += A3_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / detJ;
|
||||
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J23 * J31) - (J21 * J33);
|
||||
const double A13 = (J21 * J32) - (J22 * J31);
|
||||
|
||||
const double A21 = (J13 * J32) - (J12 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J12 * J31) - (J11 * J32);
|
||||
|
||||
const double A31 = (J12 * J23) - (J13 * J22);
|
||||
const double A32 = (J13 * J21) - (J11 * J23);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
// adj(J)^Tadj(J)
|
||||
oper(0, q, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
oper(1, q, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2) + (2,1)
|
||||
oper(2, q, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3) + (3,1)
|
||||
oper(3, q, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
oper(4, q, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3) + (3,2)
|
||||
oper(5, q, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuadD3D_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDofD3D_t restrict quadToDofD,
|
||||
const SymmOperator3D_t restrict oper,
|
||||
const DLocal_t restrict solIn,
|
||||
DLocal_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_gradX[NUM_QUAD];
|
||||
@shared double s_gradY[NUM_QUAD];
|
||||
@shared double s_gradZ[NUM_QUAD];
|
||||
|
||||
for (int qOff = 0; qOff < M3_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M3_INNER_BATCH) {
|
||||
double gradX = 0, gradY = 0, gradZ = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double s = solIn(d, e);
|
||||
gradX += s * quadToDofD(0, d, q);
|
||||
gradY += s * quadToDofD(1, d, q);
|
||||
gradZ += s * quadToDofD(2, d, q);
|
||||
}
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O13 = oper(2, q, e);
|
||||
const double O22 = oper(3, q, e);
|
||||
const double O23 = oper(4, q, e);
|
||||
const double O33 = oper(5, q, e);
|
||||
|
||||
s_gradX[q] = (O11 * gradX) + (O12 * gradY) + (O13 * gradZ);
|
||||
s_gradY[q] = (O12 * gradX) + (O22 * gradY) + (O23 * gradZ);
|
||||
s_gradZ[q] = (O13 * gradX) + (O23 * gradY) + (O33 * gradZ);
|
||||
}
|
||||
}
|
||||
|
||||
for (int dOff = 0; dOff < M3_INNER_BATCH; ++dOff) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M3_INNER_BATCH) {
|
||||
double r_sol = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
r_sol += ((s_gradX[q] * quadToDofD(0, d, q)) +
|
||||
(s_gradY[q] * quadToDofD(1, d, q)) +
|
||||
(s_gradZ[q] * quadToDofD(2, d, q)));
|
||||
}
|
||||
solOut(d, e) += r_sol;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,370 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void Assemble1D(const int numElements,
|
||||
const double * restrict quadWeights,
|
||||
const Jacobian1D_t restrict J,
|
||||
COEFF_ARGS
|
||||
SymmOperator1D_t restrict oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD_1D; ++q; @inner) {
|
||||
oper(q, e) = quadWeights[q] * COEFF / J(q, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd1D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuad_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDof_t restrict quadToDofD,
|
||||
const SymmOperator1D_t restrict oper,
|
||||
const DLocal1D_t restrict solIn,
|
||||
DLocal1D_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double grad[NUM_QUAD_1D];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] = 0;
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] += s * dofToQuadD(qx, dx);
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] *= oper(qx, e);
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double gradX = grad[qx];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
solOut(dx, e) += gradX * quadToDofD(dx, qx);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
const double * restrict quadWeights,
|
||||
const Jacobian2D_t restrict J,
|
||||
COEFF_ARGS
|
||||
SymmOperator2D_t restrict oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD_2D; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / ((J11 * J22) - (J21 * J12));
|
||||
|
||||
oper(0, q, e) = c_detJ * (J21*J21 + J22*J22); // (1,1)
|
||||
oper(1, q, e) = -c_detJ * (J21*J11 + J22*J12); // (1,2), (2,1)
|
||||
oper(2, q, e) = c_detJ * (J11*J11 + J12*J12); // (2,2)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuad_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDof_t restrict quadToDofD,
|
||||
const SymmOperator2D_t restrict oper,
|
||||
const DLocal2D_t restrict solIn,
|
||||
DLocal2D_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double grad[NUM_QUAD_1D][NUM_QUAD_1D][2];
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qy][qx][0] = 0;
|
||||
grad[qy][qx][1] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double gradX[NUM_QUAD_1D][2];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradX[qx][0] = 0;
|
||||
gradX[qx][1] = 0;
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, dy, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradX[qx][0] += s * dofToQuad(qx, dx);
|
||||
gradX[qx][1] += s * dofToQuadD(qx, dx);
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = dofToQuad(qy, dy);
|
||||
const double wDy = dofToQuadD(qy, dy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qy][qx][0] += gradX[qx][1] * wy;
|
||||
grad[qy][qx][1] += gradX[qx][0] * wDy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Calculate Dxy, xDy in plane
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const int q = QUAD_2D_ID(qx, qy);
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O22 = oper(2, q, e);
|
||||
|
||||
const double gradX = grad[qy][qx][0];
|
||||
const double gradY = grad[qy][qx][1];
|
||||
|
||||
grad[qy][qx][0] = (O11 * gradX) + (O12 * gradY);
|
||||
grad[qy][qx][1] = (O12 * gradX) + (O22 * gradY);
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double gradX[NUM_DOFS_1D][2];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradX[dx][0] = 0;
|
||||
gradX[dx][1] = 0;
|
||||
}
|
||||
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double gX = grad[qy][qx][0];
|
||||
const double gY = grad[qy][qx][1];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double wx = quadToDof(dx, qx);
|
||||
const double wDx = quadToDofD(dx, qx);
|
||||
gradX[dx][0] += gX * wDx;
|
||||
gradX[dx][1] += gY * wx;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = quadToDof(dy, qy);
|
||||
const double wDy = quadToDofD(dy, qy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
solOut(dx, dy, e) += ((gradX[dx][0] * wy) +
|
||||
(gradX[dx][1] * wDy));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
const double * restrict quadWeights,
|
||||
const Jacobian3D_t restrict J,
|
||||
COEFF_ARGS
|
||||
SymmOperator3D_t restrict oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD_3D; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / detJ;
|
||||
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J23 * J31) - (J21 * J33);
|
||||
const double A13 = (J21 * J32) - (J22 * J31);
|
||||
|
||||
const double A21 = (J13 * J32) - (J12 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J12 * J31) - (J11 * J32);
|
||||
|
||||
const double A31 = (J12 * J23) - (J13 * J22);
|
||||
const double A32 = (J13 * J21) - (J11 * J23);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
// adj(J)^Tadj(J)
|
||||
oper(0, q, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
oper(1, q, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2), (2,1)
|
||||
oper(2, q, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3), (3,1)
|
||||
oper(3, q, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
oper(4, q, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3), (3,2)
|
||||
oper(5, q, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuad_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDof_t restrict quadToDofD,
|
||||
const SymmOperator3D_t restrict oper,
|
||||
const DLocal3D_t restrict solIn,
|
||||
DLocal3D_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double grad[NUM_QUAD_1D][NUM_QUAD_1D][NUM_QUAD_1D][4];
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qz][qy][qx][0] = 0;
|
||||
grad[qz][qy][qx][1] = 0;
|
||||
grad[qz][qy][qx][2] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
double gradXY[NUM_QUAD_1D][NUM_QUAD_1D][4];
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradXY[qy][qx][0] = 0;
|
||||
gradXY[qy][qx][1] = 0;
|
||||
gradXY[qy][qx][2] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double gradX[NUM_QUAD_1D][2];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradX[qx][0] = 0;
|
||||
gradX[qx][1] = 0;
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, dy, dz, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradX[qx][0] += s * dofToQuad(qx, dx);
|
||||
gradX[qx][1] += s * dofToQuadD(qx, dx);
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = dofToQuad(qy, dy);
|
||||
const double wDy = dofToQuadD(qy, dy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double wx = gradX[qx][0];
|
||||
const double wDx = gradX[qx][1];
|
||||
gradXY[qy][qx][0] += wDx * wy;
|
||||
gradXY[qy][qx][1] += wx * wDy;
|
||||
gradXY[qy][qx][2] += wx * wy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
const double wz = dofToQuad(qz, dz);
|
||||
const double wDz = dofToQuadD(qz, dz);
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qz][qy][qx][0] += gradXY[qy][qx][0] * wz;
|
||||
grad[qz][qy][qx][1] += gradXY[qy][qx][1] * wz;
|
||||
grad[qz][qy][qx][2] += gradXY[qy][qx][2] * wDz;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Calculate Dxyz, xDyz, xyDz in plane
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const int q = QUAD_3D_ID(qx, qy, qz);
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O13 = oper(2, q, e);
|
||||
const double O22 = oper(3, q, e);
|
||||
const double O23 = oper(4, q, e);
|
||||
const double O33 = oper(5, q, e);
|
||||
|
||||
const double gradX = grad[qz][qy][qx][0];
|
||||
const double gradY = grad[qz][qy][qx][1];
|
||||
const double gradZ = grad[qz][qy][qx][2];
|
||||
|
||||
grad[qz][qy][qx][0] = (O11 * gradX) + (O12 * gradY) + (O13 * gradZ);
|
||||
grad[qz][qy][qx][1] = (O12 * gradX) + (O22 * gradY) + (O23 * gradZ);
|
||||
grad[qz][qy][qx][2] = (O13 * gradX) + (O23 * gradY) + (O33 * gradZ);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
double gradXY[NUM_DOFS_1D][NUM_DOFS_1D][4];
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradXY[dy][dx][0] = 0;
|
||||
gradXY[dy][dx][1] = 0;
|
||||
gradXY[dy][dx][2] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double gradX[NUM_DOFS_1D][4];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradX[dx][0] = 0;
|
||||
gradX[dx][1] = 0;
|
||||
gradX[dx][2] = 0;
|
||||
}
|
||||
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double gX = grad[qz][qy][qx][0];
|
||||
const double gY = grad[qz][qy][qx][1];
|
||||
const double gZ = grad[qz][qy][qx][2];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double wx = quadToDof(dx, qx);
|
||||
const double wDx = quadToDofD(dx, qx);
|
||||
gradX[dx][0] += gX * wDx;
|
||||
gradX[dx][1] += gY * wx;
|
||||
gradX[dx][2] += gZ * wx;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = quadToDof(dy, qy);
|
||||
const double wDy = quadToDofD(dy, qy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradXY[dy][dx][0] += gradX[dx][0] * wy;
|
||||
gradXY[dy][dx][1] += gradX[dx][1] * wDy;
|
||||
gradXY[dy][dx][2] += gradX[dx][2] * wy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double wz = quadToDof(dz, qz);
|
||||
const double wDz = quadToDofD(dz, qz);
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
solOut(dx, dy, dz, e) += ((gradXY[dy][dx][0] * wz) +
|
||||
(gradXY[dy][dx][1] * wz) +
|
||||
(gradXY[dy][dx][2] * wDz));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,433 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void Assemble1D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian1D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator1D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A1_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A1_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int q = 0; q < NUM_QUAD_1D; ++q; @inner) {
|
||||
oper(q, e) = quadWeights[q] * COEFF / J(q, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd1D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuad_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDof_t restrict quadToDofD,
|
||||
const SymmOperator1D_t restrict oper,
|
||||
const DLocal1D_t restrict solIn,
|
||||
DLocal1D_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M1_ELEMENT_BATCHES; @outer) {
|
||||
@shared double s_dofToQuadD[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_quadToDofD[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
@exclusive double grad[NUM_QUAD_1D];
|
||||
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
for (int i = el; i < NUM_QUAD_DOFS_1D; i += M1_INNER_ELEMENT_BATCH) {
|
||||
s_dofToQuadD[i] = dofToQuadD[i];
|
||||
s_quadToDofD[i] = quadToDofD[i];
|
||||
}
|
||||
}
|
||||
|
||||
for (int b = 0; b < M1_OUTER_ELEMENT_BATCH; ++b) {
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
const int e = eOff + b*M1_INNER_ELEMENT_BATCH + el;
|
||||
if (e < numElements) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] = 0;
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] += s * s_dofToQuadD(qx, dx);
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] *= oper(qx, e);
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
double s = 0;
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
s += grad[qx] * s_quadToDofD(dx, qx);
|
||||
}
|
||||
solOut(dx, e) += s;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian2D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator2D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A2_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A2_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A2_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD_2D; q += A2_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / ((J11 * J22) - (J21 * J12));
|
||||
|
||||
oper(0, q, e) = c_detJ * (J21*J21 + J22*J22); // (1,1)
|
||||
oper(1, q, e) = -c_detJ * (J21*J11 + J22*J12); // (1,2), (2,1)
|
||||
oper(2, q, e) = c_detJ * (J11*J11 + J12*J12); // (2,2)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuad_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDof_t restrict quadToDofD,
|
||||
const SymmOperator2D_t restrict oper,
|
||||
const DLocal2D_t restrict solIn,
|
||||
DLocal2D_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M2_ELEMENT_BATCH; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_dofToQuadD[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_quadToDof[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
@shared double s_quadToDofD[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
// Store xy planes in shared memory
|
||||
@shared double s_xy[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
@shared double s_xDy[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
@shared double s_grad[2 * NUM_QUAD_2D] @dim(2, NUM_QUAD_1D, NUM_QUAD_1D);
|
||||
|
||||
@exclusive double r_x[NUM_MAX_1D];
|
||||
@exclusive double r_y[NUM_QUAD_1D];
|
||||
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
for (int id = x; id < NUM_QUAD_DOFS_1D; id += NUM_MAX_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
s_dofToQuadD[id] = dofToQuadD[id];
|
||||
s_quadToDof[id] = quadToDof[id];
|
||||
s_quadToDofD[id] = quadToDofD[id];
|
||||
}
|
||||
}
|
||||
|
||||
for (int e = eOff; e < (eOff + M2_ELEMENT_BATCH); ++e) {
|
||||
if (e < numElements) {
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx; @inner) {
|
||||
if (dx < NUM_DOFS_1D) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
s_xy(dx, qy) = 0;
|
||||
s_xDy(dx, qy) = 0;
|
||||
}
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
r_x[dy] = solIn(dx, dy, e);
|
||||
}
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double xy = 0;
|
||||
double xDy = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
xy += r_x[dy] * s_dofToQuad(qy, dy);
|
||||
xDy += r_x[dy] * s_dofToQuadD(qy, dy);
|
||||
}
|
||||
s_xy(dx, qy) = xy;
|
||||
s_xDy(dx, qy) = xDy;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
if (qy < NUM_QUAD_1D) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
double gradX = 0, gradY = 0;
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradX += s_xy(dx, qy) * s_dofToQuadD(qx, dx);
|
||||
gradY += s_xDy(dx, qy) * s_dofToQuad(qx, dx);
|
||||
}
|
||||
|
||||
const int q = QUAD_2D_ID(qx, qy);
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O22 = oper(2, q, e);
|
||||
|
||||
s_grad(0, qx, qy) = (O11 * gradX) + (O12 * gradY);
|
||||
s_grad(1, qx, qy) = (O12 * gradX) + (O22 * gradY);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx; @inner) {
|
||||
if (qx < NUM_QUAD_1D) {
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
s_xy(dy, qx) = 0;
|
||||
s_xDy(dy, qx) = 0;
|
||||
}
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
r_x[qy] = s_grad(0, qx, qy);
|
||||
r_y[qy] = s_grad(1, qx, qy);
|
||||
}
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double xy = 0;
|
||||
double xDy = 0;
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
xy += r_x[qy] * s_quadToDof(dy, qy);
|
||||
xDy += r_y[qy] * s_quadToDofD(dy, qy);
|
||||
}
|
||||
s_xy(dy, qx) = xy;
|
||||
s_xDy(dy, qx) = xDy;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx; @inner) {
|
||||
if (dx < NUM_DOFS_1D) {
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double s = 0;
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
s += ((s_xy(dy, qx) * s_quadToDofD(dx, qx)) +
|
||||
(s_xDy(dy, qx) * s_quadToDof(dx, qx)));
|
||||
}
|
||||
solOut(dx, dy, e) += s;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian3D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator3D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A3_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A3_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A3_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD_3D; q += A3_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / detJ;
|
||||
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J23 * J31) - (J21 * J33);
|
||||
const double A13 = (J21 * J32) - (J22 * J31);
|
||||
|
||||
const double A21 = (J13 * J32) - (J12 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J12 * J31) - (J11 * J32);
|
||||
|
||||
const double A31 = (J12 * J23) - (J13 * J22);
|
||||
const double A32 = (J13 * J21) - (J11 * J23);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
// adj(J)^Tadj(J)
|
||||
oper(0, q, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
oper(1, q, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2), (2,1)
|
||||
oper(2, q, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3), (3,1)
|
||||
oper(3, q, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
oper(4, q, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3), (3,2)
|
||||
oper(5, q, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuad_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDof_t restrict quadToDofD,
|
||||
const SymmOperator3D_t restrict oper,
|
||||
const DLocal3D_t restrict solIn,
|
||||
DLocal3D_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_dofToQuadD[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_quadToDof[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
@shared double s_quadToDofD[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
// Store xy planes in shared memory
|
||||
@shared double s_z[NUM_MAX_2D] @dim(NUM_MAX_1D, NUM_MAX_1D);
|
||||
@shared double s_Dz[NUM_MAX_2D] @dim(NUM_MAX_1D, NUM_MAX_1D);
|
||||
@shared double s_xyDz[NUM_QUAD_2D] @dim(NUM_QUAD_1D, NUM_QUAD_1D);
|
||||
|
||||
// Store z axis as registers
|
||||
@exclusive double r_qz[NUM_QUAD_1D];
|
||||
@exclusive double r_qDz[NUM_QUAD_1D];
|
||||
@exclusive double r_dDxyz[NUM_DOFS_1D];
|
||||
@exclusive double r_dxDyz[NUM_DOFS_1D];
|
||||
@exclusive double r_dxyDz[NUM_DOFS_1D];
|
||||
|
||||
for (int y = 0; y < NUM_MAX_1D; ++y; @inner) {
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
const int id = (y * NUM_MAX_1D) + x;
|
||||
// Fetch Q <--> D maps
|
||||
if (id < NUM_QUAD_DOFS_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
s_dofToQuadD[id] = dofToQuadD[id];
|
||||
s_quadToDof[id] = quadToDof[id];
|
||||
s_quadToDofD[id] = quadToDofD[id];
|
||||
}
|
||||
// Initialize our Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_qz[qz] = 0;
|
||||
r_qDz[qz] = 0;
|
||||
}
|
||||
// Initialize our solution updates in the Z axis
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
r_dDxyz[dz] = 0;
|
||||
r_dxDyz[dz] = 0;
|
||||
r_dxyDz[dz] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double s = solIn(dx, dy, dz, e);
|
||||
// Calculate D -> Q in the Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_qz[qz] += s * s_dofToQuad(qz, dz);
|
||||
r_qDz[qz] += s * s_dofToQuadD(qz, dz);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
// For each xy plane
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
// Fill xy plane at given z position
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
s_z(dx, dy) = r_qz[qz];
|
||||
s_Dz(dx, dy) = r_qDz[qz];
|
||||
}
|
||||
}
|
||||
}
|
||||
// Calculate Dxyz, xDyz, xyDz in plane
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
for (int qx = 0; qx < NUM_MAX_1D; ++qx; @inner) {
|
||||
if ((qx < NUM_QUAD_1D) && (qy < NUM_QUAD_1D)) {
|
||||
double Dxyz = 0;
|
||||
double xDyz = 0;
|
||||
double xyDz = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = s_dofToQuad(qy, dy);
|
||||
const double wDy = s_dofToQuadD(qy, dy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double wx = s_dofToQuad(qx, dx);
|
||||
const double wDx = s_dofToQuadD(qx, dx);
|
||||
const double z = s_z(dx, dy);
|
||||
const double Dz = s_Dz(dx, dy);
|
||||
Dxyz += wDx * wy * z;
|
||||
xDyz += wx * wDy * z;
|
||||
xyDz += wx * wy * Dz;
|
||||
}
|
||||
}
|
||||
|
||||
const int q = QUAD_3D_ID(qx, qy, qz);
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O13 = oper(2, q, e);
|
||||
const double O22 = oper(3, q, e);
|
||||
const double O23 = oper(4, q, e);
|
||||
const double O33 = oper(5, q, e);
|
||||
|
||||
const double qDxyz = (O11 * Dxyz) + (O12 * xDyz) + (O13 * xyDz);
|
||||
const double qxDyz = (O12 * Dxyz) + (O22 * xDyz) + (O23 * xyDz);
|
||||
const double qxyDz = (O13 * Dxyz) + (O23 * xDyz) + (O33 * xyDz);
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double wz = s_quadToDof(dz, qz);
|
||||
const double wDz = s_quadToDofD(dz, qz);
|
||||
r_dDxyz[dz] += wz * qDxyz;
|
||||
r_dxDyz[dz] += wz * qxDyz;
|
||||
r_dxyDz[dz] += wDz * qxyDz;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
// Iterate over xy planes to compute solution
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
// Place xy plane in shared memory
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
for (int qx = 0; qx < NUM_MAX_1D; ++qx; @inner) {
|
||||
if ((qx < NUM_QUAD_1D) && (qy < NUM_QUAD_1D)) {
|
||||
s_z(qx, qy) = r_dDxyz[dz];
|
||||
s_Dz(qx, qy) = r_dxDyz[dz];
|
||||
s_xyDz(qx, qy) = r_dxyDz[dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
// Finalize solution in xy plane
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
double solZ = 0;
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = s_quadToDof(dy, qy);
|
||||
const double wDy = s_quadToDofD(dy, qy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double wx = s_quadToDof(dx, qx);
|
||||
const double wDx = s_quadToDofD(dx, qx);
|
||||
const double Dxyz = s_z(qx, qy);
|
||||
const double xDyz = s_Dz(qx, qy);
|
||||
const double xyDz = s_xyDz(qx, qy);
|
||||
solZ += ((wDx * wy * Dxyz) +
|
||||
(wx * wDy * xDyz) +
|
||||
(wx * wy * xyDz));
|
||||
}
|
||||
}
|
||||
solOut(dx, dy, dz, e) += solZ;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,140 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "url_handler.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "../../general/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
bool Engine::fileOpenerRegistered = false;
|
||||
|
||||
void Engine::Init(const std::string &engine_spec)
|
||||
{
|
||||
//
|
||||
// Initialize inherited fields
|
||||
//
|
||||
memory_resources[0] = NULL;
|
||||
workers_weights[0]= 1.0;
|
||||
workers_mem_res[0] = 0;
|
||||
|
||||
//
|
||||
// Initialize the OCCA engine
|
||||
//
|
||||
::occa::properties props(engine_spec);
|
||||
device = new ::occa::device[1];
|
||||
device[0].setup(props);
|
||||
|
||||
okl_path = "mfem-occa://";
|
||||
// okl_defines = "...";
|
||||
if (!fileOpenerRegistered)
|
||||
{
|
||||
// The directories from "MFEM_OCCA_OKL_PATH", if any, have the highest
|
||||
// priority.
|
||||
FileOpener *fo = new FileOpener("mfem-occa://", "MFEM_OCCA_OKL_PATH");
|
||||
// Next in priority is the source path, if it exists.
|
||||
std::string mfem_src_prefix = mfem::GetSourcePath();
|
||||
fo->AddDir(mfem_src_prefix + "/backends/occa");
|
||||
// And last in priority is the install path, if it exists.
|
||||
std::string mfem_install_prefix = mfem::GetInstallPath();
|
||||
fo->AddDir(mfem_install_prefix + "/lib/mfem/occa");
|
||||
::occa::io::fileOpener::add(fo);
|
||||
fileOpenerRegistered = true;
|
||||
}
|
||||
}
|
||||
|
||||
Engine::Engine(const std::string &engine_spec)
|
||||
: mfem::Engine(NULL, 1, 1)
|
||||
{
|
||||
Init(engine_spec);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
Engine::Engine(MPI_Comm _comm, const std::string &engine_spec)
|
||||
: mfem::Engine(NULL, 1, 1)
|
||||
{
|
||||
comm = _comm;
|
||||
Init(engine_spec);
|
||||
}
|
||||
#endif
|
||||
|
||||
DLayout Engine::MakeLayout(std::size_t size) const
|
||||
{
|
||||
return DLayout(new Layout(*this, size));
|
||||
}
|
||||
|
||||
DLayout Engine::MakeLayout(const mfem::Array<std::size_t> &offsets) const
|
||||
{
|
||||
MFEM_ASSERT(offsets.Size() == 2,
|
||||
"multiple workers are not supported yet");
|
||||
return DLayout(new Layout(*this, offsets.Last()));
|
||||
}
|
||||
|
||||
DArray Engine::MakeArray(PLayout &layout, std::size_t item_size) const
|
||||
{
|
||||
MFEM_ASSERT(dynamic_cast<Layout *>(&layout) != NULL,
|
||||
"invalid input layout");
|
||||
Layout *lt = static_cast<Layout *>(&layout);
|
||||
return DArray(new Array(*lt, item_size));
|
||||
}
|
||||
|
||||
DVector Engine::MakeVector(PLayout &layout, int type_id) const
|
||||
{
|
||||
MFEM_ASSERT(type_id == ScalarId<double>::value, "invalid type_id");
|
||||
MFEM_ASSERT(dynamic_cast<Layout *>(&layout) != NULL,
|
||||
"invalid input layout");
|
||||
Layout *lt = static_cast<Layout *>(&layout);
|
||||
return DVector(new Vector(*lt));
|
||||
}
|
||||
|
||||
DFiniteElementSpace Engine::MakeFESpace(mfem::FiniteElementSpace &fespace) const
|
||||
{
|
||||
return DFiniteElementSpace(new FiniteElementSpace(*this, fespace));
|
||||
}
|
||||
|
||||
DBilinearForm Engine::MakeBilinearForm(mfem::BilinearForm &bf) const
|
||||
{
|
||||
return DBilinearForm(new BilinearForm(*this, bf));
|
||||
}
|
||||
|
||||
void Engine::AssembleLinearForm(LinearForm &l_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
}
|
||||
|
||||
mfem::Operator *Engine::MakeOperator(const MixedBilinearForm &mbl_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
mfem::Operator *Engine::MakeOperator(const NonlinearForm &nl_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,111 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_ENGINE_HPP
|
||||
#define MFEM_BACKENDS_OCCA_ENGINE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "../base/backend.hpp"
|
||||
#include <occa.hpp>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Engine : public mfem::Engine
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// mfem::Backend *backend;
|
||||
#ifdef MFEM_USE_MPI
|
||||
// MPI_Comm comm;
|
||||
#endif
|
||||
// int num_mem_res;
|
||||
// int num_workers;
|
||||
// MemoryResource **memory_resources;
|
||||
// double *workers_weights;
|
||||
// int *workers_mem_res;
|
||||
|
||||
static bool fileOpenerRegistered;
|
||||
::occa::device *device; // An array of OCCA devices
|
||||
std::string okl_path, okl_defines;
|
||||
|
||||
void Init(const std::string &engine_spec);
|
||||
|
||||
public:
|
||||
Engine(const std::string &engine_spec);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
Engine(MPI_Comm comm, const std::string &engine_spec);
|
||||
#endif
|
||||
|
||||
virtual ~Engine() { delete [] device; }
|
||||
|
||||
/**
|
||||
@name OCCA specific interface, used by other objects in the OCCA backend
|
||||
*/
|
||||
///@{
|
||||
|
||||
::occa::device GetDevice(int idx = 0) const { return device[idx]; }
|
||||
|
||||
/// TODO: doxygen
|
||||
const std::string &GetOklPath() const { return okl_path; }
|
||||
|
||||
/// TODO: doxygen
|
||||
const std::string &GetOklDefines() const { return okl_defines; }
|
||||
|
||||
///@}
|
||||
// End: OCCA specific interface
|
||||
|
||||
/**
|
||||
@name Virtual interface: finite element data structures and algorithms
|
||||
*/
|
||||
///@{
|
||||
|
||||
virtual DLayout MakeLayout(std::size_t size) const;
|
||||
virtual DLayout MakeLayout(const mfem::Array<std::size_t> &offsets) const;
|
||||
|
||||
virtual DArray MakeArray(PLayout &layout, std::size_t item_size) const;
|
||||
|
||||
virtual DVector MakeVector(PLayout &layout,
|
||||
int type_id = ScalarId<double>::value) const;
|
||||
|
||||
virtual DFiniteElementSpace MakeFESpace(mfem::FiniteElementSpace &
|
||||
fespace) const;
|
||||
|
||||
virtual DBilinearForm MakeBilinearForm(mfem::BilinearForm &bf) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual void AssembleLinearForm(LinearForm &l_form) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual mfem::Operator *MakeOperator(const MixedBilinearForm &mbl_form) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual mfem::Operator *MakeOperator(const NonlinearForm &nl_form) const;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_ENGINE_HPP
|
||||
@@ -0,0 +1,174 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "interpolation.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
FiniteElementSpace::FiniteElementSpace(const Engine &e,
|
||||
mfem::FiniteElementSpace &fespace)
|
||||
: PFiniteElementSpace(e, fespace),
|
||||
e_layout(e, 0) // resized in SetupLocalGlobalMaps()
|
||||
{
|
||||
vdim = fespace.GetVDim();
|
||||
ordering = fespace.GetOrdering();
|
||||
|
||||
SetupLocalGlobalMaps();
|
||||
SetupOperators();
|
||||
SetupKernels();
|
||||
}
|
||||
|
||||
FiniteElementSpace::~FiniteElementSpace()
|
||||
{
|
||||
delete [] elementDofMap;
|
||||
delete [] elementDofMapInverse;
|
||||
delete restrictionOp;
|
||||
delete prolongationOp;
|
||||
}
|
||||
|
||||
void FiniteElementSpace::SetupLocalGlobalMaps()
|
||||
{
|
||||
const mfem::FiniteElement &fe = *(fes->GetFE(0));
|
||||
const mfem::TensorBasisElement *el =
|
||||
dynamic_cast<const mfem::TensorBasisElement*>(&fe);
|
||||
|
||||
const mfem::Table &e2dTable = fes->GetElementToDofTable();
|
||||
const int *elementMap = e2dTable.GetJ();
|
||||
const int elements = fes->GetNE();
|
||||
|
||||
globalDofs = fes->GetNDofs();
|
||||
localDofs = fe.GetDof();
|
||||
|
||||
e_layout.Resize(localDofs * elements * fes->GetVDim());
|
||||
|
||||
elementDofMap = new int[localDofs];
|
||||
elementDofMapInverse = new int[localDofs];
|
||||
if (el)
|
||||
{
|
||||
::memcpy(elementDofMap,
|
||||
el->GetDofMap().GetData(),
|
||||
localDofs * sizeof(int));
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int i = 0; i < localDofs; ++i)
|
||||
{
|
||||
elementDofMap[i] = i;
|
||||
}
|
||||
}
|
||||
for (int i = 0; i < localDofs; ++i)
|
||||
{
|
||||
elementDofMapInverse[elementDofMap[i]] = i;
|
||||
}
|
||||
|
||||
// Allocate device offsets and indices
|
||||
globalToLocalOffsets.allocate(GetDevice(),
|
||||
globalDofs + 1);
|
||||
globalToLocalIndices.allocate(GetDevice(),
|
||||
localDofs, elements);
|
||||
localToGlobalMap.allocate(GetDevice(),
|
||||
localDofs, elements);
|
||||
|
||||
int *offsets = globalToLocalOffsets.ptr();
|
||||
int *indices = globalToLocalIndices.ptr();
|
||||
int *l2gMap = localToGlobalMap.ptr();
|
||||
|
||||
// We'll be keeping a count of how many local nodes point
|
||||
// to its global dof
|
||||
for (int i = 0; i <= globalDofs; ++i)
|
||||
{
|
||||
offsets[i] = 0;
|
||||
}
|
||||
|
||||
for (int e = 0; e < elements; ++e)
|
||||
{
|
||||
for (int d = 0; d < localDofs; ++d)
|
||||
{
|
||||
const int gid = elementMap[localDofs*e + d];
|
||||
++offsets[gid + 1];
|
||||
}
|
||||
}
|
||||
// Aggregate to find offsets for each global dof
|
||||
for (int i = 1; i <= globalDofs; ++i)
|
||||
{
|
||||
offsets[i] += offsets[i - 1];
|
||||
}
|
||||
// For each global dof, fill in all local nodes that point
|
||||
// to it
|
||||
for (int e = 0; e < elements; ++e)
|
||||
{
|
||||
for (int d = 0; d < localDofs; ++d)
|
||||
{
|
||||
const int gid = elementMap[localDofs*e + elementDofMap[d]];
|
||||
const int lid = localDofs*e + d;
|
||||
indices[offsets[gid]++] = lid;
|
||||
l2gMap[lid] = gid;
|
||||
}
|
||||
}
|
||||
// We shifted the offsets vector by 1 by using it
|
||||
// as a counter. Now we shift it back.
|
||||
for (int i = globalDofs; i > 0; --i)
|
||||
{
|
||||
offsets[i] = offsets[i - 1];
|
||||
}
|
||||
offsets[0] = 0;
|
||||
|
||||
globalToLocalOffsets.keepInDevice();
|
||||
globalToLocalIndices.keepInDevice();
|
||||
localToGlobalMap.keepInDevice();
|
||||
}
|
||||
|
||||
void FiniteElementSpace::SetupOperators()
|
||||
{
|
||||
const mfem::SparseMatrix *R = fes->GetRestrictionMatrix();
|
||||
const mfem::Operator *P = fes->GetProlongationMatrix();
|
||||
CreateRPOperators(OccaVLayout(), OccaTrueVLayout(),
|
||||
R, P,
|
||||
restrictionOp,
|
||||
prolongationOp);
|
||||
}
|
||||
|
||||
void FiniteElementSpace::SetupKernels()
|
||||
{
|
||||
::occa::properties props("defines: {"
|
||||
" TILESIZE: 256,"
|
||||
"}");
|
||||
props["defines/NUM_VDIM"] = vdim;
|
||||
|
||||
props["defines/ORDERING_BY_NODES"] = 0;
|
||||
props["defines/ORDERING_BY_VDIM"] = 1;
|
||||
props["defines/VDIM_ORDERING"] = (int) (ordering == Ordering::byVDIM);
|
||||
|
||||
::occa::device device = GetDevice();
|
||||
const std::string &okl_path = OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = OccaEngine().GetOklDefines();
|
||||
globalToLocalKernel = device.buildKernel(okl_path + "fespace.okl",
|
||||
"GlobalToLocal",
|
||||
props + okl_defines);
|
||||
localToGlobalKernel = device.buildKernel(okl_path + "fespace.okl",
|
||||
"LocalToGlobal",
|
||||
props + okl_defines);
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,146 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_FE_SPACE_HPP
|
||||
#define MFEM_BACKENDS_OCCA_FE_SPACE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "engine.hpp"
|
||||
#include "operator.hpp"
|
||||
#include "../../fem/fem.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
/// TODO: doxygen
|
||||
class FiniteElementSpace : public mfem::PFiniteElementSpace
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// mfem::FiniteElementSpace *fes;
|
||||
|
||||
Layout e_layout;
|
||||
|
||||
int *elementDofMap;
|
||||
int *elementDofMapInverse;
|
||||
|
||||
::occa::array<int> globalToLocalOffsets;
|
||||
::occa::array<int> globalToLocalIndices;
|
||||
::occa::array<int> localToGlobalMap;
|
||||
::occa::kernel globalToLocalKernel, localToGlobalKernel;
|
||||
|
||||
mfem::Ordering::Type ordering;
|
||||
|
||||
int globalDofs, localDofs;
|
||||
int vdim;
|
||||
|
||||
mfem::Operator *restrictionOp, *prolongationOp;
|
||||
|
||||
void SetupLocalGlobalMaps();
|
||||
void SetupOperators();
|
||||
void SetupKernels();
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
FiniteElementSpace(const Engine &e, mfem::FiniteElementSpace &fespace);
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~FiniteElementSpace();
|
||||
|
||||
/// TODO: doxygen
|
||||
const Engine &OccaEngine() const
|
||||
{ return *static_cast<const Engine *>(engine.Get()); }
|
||||
|
||||
/// TODO: doxygen
|
||||
::occa::device GetDevice(int idx = 0) const
|
||||
{ return OccaEngine().GetDevice(idx); }
|
||||
|
||||
mfem::Mesh* GetMesh() const { return fes->GetMesh(); }
|
||||
|
||||
Layout &OccaVLayout() const
|
||||
{ return *fes->GetVLayout().As<Layout>(); }
|
||||
|
||||
Layout &OccaTrueVLayout() const
|
||||
{ return *fes->GetTrueVLayout().As<Layout>(); }
|
||||
|
||||
Layout &OccaEVLayout() { return e_layout; }
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
bool isDistributed() const { return (OccaEngine().GetComm() != MPI_COMM_NULL); }
|
||||
#else
|
||||
bool isDistributed() const { return false; }
|
||||
#endif
|
||||
|
||||
bool hasTensorBasis() const
|
||||
{ return dynamic_cast<const mfem::TensorBasisElement*>(fes->GetFE(0)); }
|
||||
|
||||
mfem::Ordering::Type GetOrdering() const { return ordering; }
|
||||
|
||||
int GetGlobalDofs() const { return globalDofs; }
|
||||
int GetLocalDofs() const { return localDofs; }
|
||||
|
||||
int GetDim() const { return fes->GetMesh()->Dimension(); }
|
||||
int GetVDim() const { return vdim; }
|
||||
|
||||
int GetVSize() const { return globalDofs * vdim; }
|
||||
int GetTrueVSize() const { return fes->GetTrueVSize(); }
|
||||
int GetGlobalVSize() const { return globalDofs*vdim; /* FIXME: MPI */ }
|
||||
int GetGlobalTrueVSize() const { return fes->GetTrueVSize(); }
|
||||
|
||||
int GetNE() const { return fes->GetNE(); }
|
||||
|
||||
const mfem::FiniteElementCollection* FEColl() const
|
||||
{ return fes->FEColl(); }
|
||||
const mfem::FiniteElement* GetFE(const int idx) const
|
||||
{ return fes->GetFE(idx); }
|
||||
|
||||
const int* GetElementDofMap() const { return elementDofMap; }
|
||||
const int* GetElementDofMapInverse() const { return elementDofMapInverse; }
|
||||
|
||||
const mfem::Operator* GetRestrictionOperator() { return restrictionOp; }
|
||||
const mfem::Operator* GetProlongationOperator() { return prolongationOp; }
|
||||
|
||||
const ::occa::array<int> GetLocalToGlobalMap() const
|
||||
{ return localToGlobalMap; }
|
||||
|
||||
void GlobalToLocal(const Vector &globalVec, Vector &localVec) const
|
||||
{
|
||||
globalToLocalKernel(globalDofs,
|
||||
localDofs * fes->GetNE(),
|
||||
globalToLocalOffsets,
|
||||
globalToLocalIndices,
|
||||
globalVec.OccaMem(), localVec.OccaMem());
|
||||
}
|
||||
void LocalToGlobal(const Vector &localVec, Vector &globalVec) const
|
||||
{
|
||||
localToGlobalKernel(globalDofs,
|
||||
localDofs * fes->GetNE(),
|
||||
globalToLocalOffsets,
|
||||
globalToLocalIndices,
|
||||
localVec.OccaMem(), globalVec.OccaMem());
|
||||
}
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_FE_SPACE_HPP
|
||||
@@ -0,0 +1,67 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
TILESIZE : Tilesize for iterating over entries
|
||||
================================================
|
||||
*/
|
||||
|
||||
#if VDIM_ORDERING == ORDERING_BY_VDIM
|
||||
typedef double *Global_t @dim(NUM_VDIM, globalEntries);
|
||||
typedef double *Local_t @dim(NUM_VDIM, localEntries);
|
||||
#else
|
||||
typedef double *Global_t @dim(NUM_VDIM, globalEntries) @dimOrder(1, 0);
|
||||
typedef double *Local_t @dim(NUM_VDIM, localEntries) @dimOrder(1, 0);
|
||||
#endif
|
||||
|
||||
@kernel void GlobalToLocal(const int globalEntries,
|
||||
const int localEntries,
|
||||
const int * restrict offsets,
|
||||
const int * restrict indices,
|
||||
const Global_t restrict globalX,
|
||||
Local_t restrict localX) {
|
||||
|
||||
for (int i = 0; i < globalEntries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < globalEntries) {
|
||||
const int offset = offsets[i];
|
||||
const int nextOffset = offsets[i + 1];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double dofValue = globalX(v, i);
|
||||
for (int j = offset; j < nextOffset; ++j) {
|
||||
localX(v, indices[j]) = dofValue;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void LocalToGlobal(const int globalEntries,
|
||||
const int localEntries,
|
||||
const int * restrict offsets,
|
||||
const int * restrict indices,
|
||||
const Local_t restrict localX,
|
||||
Global_t restrict globalX) {
|
||||
|
||||
for (int i = 0; i < globalEntries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < globalEntries) {
|
||||
const int offset = offsets[i];
|
||||
const int nextOffset = offsets[i + 1];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
double dofValue = 0;
|
||||
for (int j = offset; j < nextOffset; ++j) {
|
||||
dofValue += localX(v, indices[j]);
|
||||
}
|
||||
globalX(v, i) = dofValue;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,181 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef STORE_JACOBIAN
|
||||
# define STORE_JACOBIAN 1
|
||||
#endif
|
||||
|
||||
#ifndef STORE_JACOBIAN_INV
|
||||
# define STORE_JACOBIAN_INV 1
|
||||
#endif
|
||||
|
||||
#ifndef STORE_JACOBIAN_DET
|
||||
# define STORE_JACOBIAN_DET 1
|
||||
#endif
|
||||
|
||||
typedef double* Local1D_t @dim(1, NUM_DOFS, numElements);
|
||||
typedef double* Local2D_t @dim(2, NUM_DOFS, numElements);
|
||||
typedef double* Local3D_t @dim(3, NUM_DOFS, numElements);
|
||||
|
||||
typedef double* QLocal_t @dim(NUM_QUAD, numElements);
|
||||
|
||||
typedef double* DofToQuadD1D_t @dim(NUM_QUAD, NUM_DOFS);
|
||||
typedef double* DofToQuadD2D_t @dim(2, NUM_QUAD, NUM_DOFS);
|
||||
typedef double* DofToQuadD3D_t @dim(3, NUM_QUAD, NUM_DOFS);
|
||||
|
||||
typedef double* Jacobian1D_t @dim(NUM_QUAD, numElements);
|
||||
typedef double* Jacobian2D_t @dim(2, 2, NUM_QUAD, numElements);
|
||||
typedef double* Jacobian3D_t @dim(3, 3, NUM_QUAD, numElements);
|
||||
|
||||
@kernel void InitGeometryInfo1D(const int numElements,
|
||||
const DofToQuadD1D_t restrict dofToQuadD,
|
||||
const Local1D_t restrict nodes,
|
||||
Jacobian1D_t restrict J,
|
||||
Jacobian1D_t restrict invJ,
|
||||
QLocal_t restrict detJ) {
|
||||
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_nodes[NUM_DOFS];
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
for (int d = q; d < NUM_DOFS; d += NUM_QUAD) {
|
||||
s_nodes[d] = nodes(0, d, e);
|
||||
}
|
||||
}
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
double J11 = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double wx = dofToQuadD(q, d);
|
||||
J11 += wx * s_nodes[d];
|
||||
}
|
||||
#if STORE_JACOBIAN
|
||||
J(q, e) = J11;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_INV
|
||||
invJ(q, e) = 1.0 / J11;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_DET
|
||||
detJ(q, e) = J11;
|
||||
#endif
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void InitGeometryInfo2D(const int numElements,
|
||||
const DofToQuadD2D_t restrict dofToQuadD,
|
||||
const Local2D_t restrict nodes,
|
||||
Jacobian2D_t restrict J,
|
||||
Jacobian2D_t restrict invJ,
|
||||
QLocal_t restrict detJ) {
|
||||
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_nodes[2 * NUM_DOFS] @dim(2, NUM_DOFS);
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
for (int d = q; d < NUM_DOFS; d += NUM_QUAD) {
|
||||
s_nodes(0, d) = nodes(0, d, e);
|
||||
s_nodes(1, d) = nodes(1, d, e);
|
||||
}
|
||||
}
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
double J11 = 0, J12 = 0;
|
||||
double J21 = 0, J22 = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double wx = dofToQuadD(0, q, d);
|
||||
const double wy = dofToQuadD(1, q, d);
|
||||
const double x = s_nodes(0, d);
|
||||
const double y = s_nodes(1, d);
|
||||
J11 += (wx * x); J12 += (wx * y);
|
||||
J21 += (wy * x); J22 += (wy * y);
|
||||
}
|
||||
#if STORE_JACOBIAN_INV || STORE_JACOBIAN_DET
|
||||
const double r_detJ = (J11 * J22) - (J12 * J21);
|
||||
#endif
|
||||
#if STORE_JACOBIAN
|
||||
J(0, 0, q, e) = J11; J(1, 0, q, e) = J12;
|
||||
J(0, 1, q, e) = J21; J(1, 1, q, e) = J22;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_INV
|
||||
const double r_idetJ = 1.0 / r_detJ;
|
||||
invJ(0, 0, q, e) = J22 * r_idetJ;
|
||||
invJ(1, 0, q, e) = -J12 * r_idetJ;
|
||||
|
||||
invJ(0, 1, q, e) = -J21 * r_idetJ;
|
||||
invJ(1, 1, q, e) = J11 * r_idetJ;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_DET
|
||||
detJ(q, e) = r_detJ;
|
||||
#endif
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void InitGeometryInfo3D(const int numElements,
|
||||
const DofToQuadD3D_t restrict dofToQuadD,
|
||||
const Local3D_t restrict nodes,
|
||||
Jacobian3D_t restrict J,
|
||||
Jacobian3D_t restrict invJ,
|
||||
QLocal_t restrict detJ) {
|
||||
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_nodes[3 * NUM_DOFS] @dim(3, NUM_DOFS);
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
for (int d = q; d < NUM_DOFS; d += NUM_QUAD) {
|
||||
s_nodes(0, d) = nodes(0, d, e);
|
||||
s_nodes(1, d) = nodes(1, d, e);
|
||||
s_nodes(2, d) = nodes(2, d, e);
|
||||
}
|
||||
}
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
double J11 = 0, J12 = 0, J13 = 0;
|
||||
double J21 = 0, J22 = 0, J23 = 0;
|
||||
double J31 = 0, J32 = 0, J33 = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double wx = dofToQuadD(0, q, d);
|
||||
const double wy = dofToQuadD(1, q, d);
|
||||
const double wz = dofToQuadD(2, q, d);
|
||||
const double x = s_nodes(0, d);
|
||||
const double y = s_nodes(1, d);
|
||||
const double z = s_nodes(2, d);
|
||||
J11 += (wx * x); J12 += (wx * y); J13 += (wx * z);
|
||||
J21 += (wy * x); J22 += (wy * y); J23 += (wy * z);
|
||||
J31 += (wz * x); J32 += (wz * y); J33 += (wz * z);
|
||||
}
|
||||
#if STORE_JACOBIAN_INV || STORE_JACOBIAN_DET
|
||||
const double r_detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
#endif
|
||||
#if STORE_JACOBIAN
|
||||
J(0, 0, q, e) = J11; J(1, 0, q, e) = J12; J(2, 0, q, e) = J13;
|
||||
J(0, 1, q, e) = J21; J(1, 1, q, e) = J22; J(2, 1, q, e) = J23;
|
||||
J(0, 2, q, e) = J31; J(1, 2, q, e) = J32; J(2, 2, q, e) = J33;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_INV
|
||||
const double r_idetJ = 1.0 / r_detJ;
|
||||
invJ(0, 0, q, e) = r_idetJ * ((J22 * J33) - (J23 * J32));
|
||||
invJ(1, 0, q, e) = r_idetJ * ((J32 * J13) - (J33 * J12));
|
||||
invJ(2, 0, q, e) = r_idetJ * ((J12 * J23) - (J13 * J22));
|
||||
|
||||
invJ(0, 1, q, e) = r_idetJ * ((J23 * J31) - (J21 * J33));
|
||||
invJ(1, 1, q, e) = r_idetJ * ((J33 * J11) - (J31 * J13));
|
||||
invJ(2, 1, q, e) = r_idetJ * ((J13 * J21) - (J11 * J23));
|
||||
|
||||
invJ(0, 2, q, e) = r_idetJ * ((J21 * J32) - (J22 * J31));
|
||||
invJ(1, 2, q, e) = r_idetJ * ((J31 * J12) - (J32 * J11));
|
||||
invJ(2, 2, q, e) = r_idetJ * ((J11 * J22) - (J12 * J21));
|
||||
#endif
|
||||
#if STORE_JACOBIAN_DET
|
||||
detJ(q, e) = r_detJ;
|
||||
#endif
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,195 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "gridfunc.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "../../fem/gridfunc.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
std::map<std::string, ::occa::kernel> gridFunctionKernels;
|
||||
|
||||
::occa::kernel GetGridFunctionKernel(::occa::device device,
|
||||
FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir)
|
||||
{
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
const FiniteElement &fe = *(fespace.GetFE(0));
|
||||
const int dim = fe.GetDim();
|
||||
const int vdim = fespace.GetVDim();
|
||||
|
||||
std::stringstream ss;
|
||||
ss << ::occa::hash(device)
|
||||
<< "FEColl : " << fespace.FEColl()->Name()
|
||||
<< "Quad: " << numQuad
|
||||
<< "Dim: " << dim
|
||||
<< "VDim: " << vdim;
|
||||
std::string hash = ss.str();
|
||||
|
||||
// Kernel defines
|
||||
::occa::properties props;
|
||||
props["defines/NUM_VDIM"] = vdim;
|
||||
|
||||
SetProperties(fespace, ir, props);
|
||||
|
||||
::occa::kernel kernel = gridFunctionKernels[hash];
|
||||
if (!kernel.isInitialized())
|
||||
{
|
||||
const std::string &okl_path = fespace.OccaEngine().GetOklPath();
|
||||
kernel = device.buildKernel(okl_path + "gridfunc.okl",
|
||||
stringWithDim("GridFuncToQuad", dim),
|
||||
props);
|
||||
}
|
||||
return kernel;
|
||||
}
|
||||
|
||||
// OccaGridFunction::OccaGridFunction() :
|
||||
// Vector(),
|
||||
// ofespace(NULL),
|
||||
// sequence(0) {}
|
||||
|
||||
OccaGridFunction::OccaGridFunction(FiniteElementSpace *ofespace_)
|
||||
: PArray(ofespace_->OccaVLayout()),
|
||||
Array(ofespace_->OccaVLayout(), sizeof(double)),
|
||||
Vector(ofespace_->OccaVLayout()),
|
||||
ofespace(ofespace_),
|
||||
sequence(0) {}
|
||||
|
||||
// OccaGridFunction::OccaGridFunction(OccaFiniteElementSpace *ofespace_,
|
||||
// OccaVectorRef ref) :
|
||||
// OccaVector(ref),
|
||||
// ofespace(ofespace_),
|
||||
// sequence(0) {}
|
||||
|
||||
OccaGridFunction::OccaGridFunction(const OccaGridFunction &v)
|
||||
: PArray(v),
|
||||
Array(v),
|
||||
Vector(v),
|
||||
ofespace(v.ofespace),
|
||||
sequence(v.sequence) {}
|
||||
|
||||
OccaGridFunction& OccaGridFunction::operator = (double value)
|
||||
{
|
||||
Fill(value);
|
||||
return *this;
|
||||
}
|
||||
|
||||
OccaGridFunction& OccaGridFunction::operator = (const Vector &v)
|
||||
{
|
||||
Assign<double>(v);
|
||||
return *this;
|
||||
}
|
||||
|
||||
// OccaGridFunction& OccaGridFunction::operator = (const OccaVectorRef &v)
|
||||
// {
|
||||
// OccaVector::operator = (v);
|
||||
// return *this;
|
||||
// }
|
||||
|
||||
OccaGridFunction& OccaGridFunction::operator = (const OccaGridFunction &v)
|
||||
{
|
||||
Assign<double>(v);
|
||||
return *this;
|
||||
}
|
||||
|
||||
// void OccaGridFunction::SetGridFunction(mfem::GridFunction &gf)
|
||||
// {
|
||||
// Vector v = *this;
|
||||
// gf.MakeRef(ofespace->GetFESpace(), v, 0);
|
||||
// // Make gf the owner of the data
|
||||
// v.Swap(gf);
|
||||
// }
|
||||
|
||||
void OccaGridFunction::GetTrueDofs(Vector &v)
|
||||
{
|
||||
const mfem::Operator *R = ofespace->GetRestrictionOperator();
|
||||
if (!R)
|
||||
{
|
||||
v.MakeRef(*this);
|
||||
}
|
||||
else
|
||||
{
|
||||
v.Resize<double>(R->OutLayout(), NULL);
|
||||
mfem::Vector mfem_v(v);
|
||||
R->Mult(this->Wrap(), mfem_v);
|
||||
}
|
||||
}
|
||||
|
||||
void OccaGridFunction::SetFromTrueDofs(Vector &v)
|
||||
{
|
||||
const mfem::Operator *P = ofespace->GetProlongationOperator();
|
||||
if (!P)
|
||||
{
|
||||
MakeRef(v);
|
||||
}
|
||||
else
|
||||
{
|
||||
Resize<double>(P->OutLayout(), NULL);
|
||||
mfem::Vector mfem_this(*this);
|
||||
P->Mult(v.Wrap(), mfem_this);
|
||||
}
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace* OccaGridFunction::GetFESpace()
|
||||
{
|
||||
return ofespace->GetFESpace();
|
||||
}
|
||||
|
||||
const mfem::FiniteElementSpace* OccaGridFunction::GetFESpace() const
|
||||
{
|
||||
return ofespace->GetFESpace();
|
||||
}
|
||||
|
||||
void OccaGridFunction::ToQuad(const IntegrationRule &ir, Vector &quadValues)
|
||||
{
|
||||
const Engine &engine = OccaLayout().OccaEngine();
|
||||
::occa::device device = engine.GetDevice();
|
||||
|
||||
OccaDofQuadMaps &maps = OccaDofQuadMaps::Get(device, *ofespace, ir);
|
||||
|
||||
const int elements = ofespace->GetNE();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
quadValues.Resize<double>(*(new Layout(engine, numQuad * elements)), NULL);
|
||||
|
||||
::occa::kernel g2qKernel = GetGridFunctionKernel(device, *ofespace, ir);
|
||||
g2qKernel(elements,
|
||||
maps.dofToQuad,
|
||||
ofespace->GetLocalToGlobalMap(),
|
||||
this->OccaMem(),
|
||||
quadValues.OccaMem());
|
||||
}
|
||||
|
||||
void OccaGridFunction::Distribute(const Vector &v)
|
||||
{
|
||||
if (ofespace->isDistributed())
|
||||
{
|
||||
mfem::Vector mfem_this(*this);
|
||||
ofespace->GetProlongationOperator()->Mult(v.Wrap(), mfem_this);
|
||||
}
|
||||
else
|
||||
{
|
||||
*this = v;
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,83 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_GRID_FUNC_HPP
|
||||
#define MFEM_BACKENDS_OCCA_GRID_FUNC_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class IntegrationRule;
|
||||
class GridFunction;
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class OccaIntegrator;
|
||||
class OccaDofQuadMaps;
|
||||
|
||||
// TODO: make this object part of the backend or the engine.
|
||||
extern std::map<std::string, ::occa::kernel> gridFunctionKernels;
|
||||
|
||||
// TODO: make this a method of the backend or the engine.
|
||||
::occa::kernel GetGridFunctionKernel(::occa::device device,
|
||||
FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir);
|
||||
|
||||
class OccaGridFunction : public Vector
|
||||
{
|
||||
protected:
|
||||
FiniteElementSpace *ofespace;
|
||||
long sequence;
|
||||
|
||||
::occa::kernel gridFuncToQuad[3];
|
||||
|
||||
public:
|
||||
// OccaGridFunction();
|
||||
|
||||
OccaGridFunction(FiniteElementSpace *ofespace_);
|
||||
|
||||
// OccaGridFunction(FiniteElementSpace *ofespace_,
|
||||
// OccaVectorRef ref);
|
||||
|
||||
OccaGridFunction(const OccaGridFunction &gf);
|
||||
|
||||
OccaGridFunction& operator = (double value);
|
||||
OccaGridFunction& operator = (const Vector &v);
|
||||
// OccaGridFunction& operator = (const OccaVectorRef &v);
|
||||
OccaGridFunction& operator = (const OccaGridFunction &gf);
|
||||
|
||||
// void SetGridFunction(mfem::GridFunction &gf);
|
||||
|
||||
void GetTrueDofs(Vector &v);
|
||||
void SetFromTrueDofs(Vector &v);
|
||||
|
||||
mfem::FiniteElementSpace* GetFESpace();
|
||||
const mfem::FiniteElementSpace* GetFESpace() const;
|
||||
|
||||
void ToQuad(const mfem::IntegrationRule &ir, Vector &quadValues);
|
||||
|
||||
void Distribute(const Vector &v);
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_GRID_FUNC_HPP
|
||||
@@ -0,0 +1,26 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
#if USING_TENSOR_OPS
|
||||
# if OCCA_USING_CPU
|
||||
# include "mfem-occa://gridfunc/tensor/cpu.okl"
|
||||
# else
|
||||
# include "mfem-occa://gridfunc/tensor/gpuHighOrder.okl"
|
||||
# endif
|
||||
#else
|
||||
# if OCCA_USING_CPU
|
||||
# include "mfem-occa://gridfunc/simplex/cpu.okl"
|
||||
# else
|
||||
# include "mfem-occa://gridfunc/simplex/gpuHighOrder.okl"
|
||||
# endif
|
||||
#endif
|
||||
@@ -0,0 +1,63 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void GridFuncToQuad2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal_t restrict out) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const int gid = l2gMap(d, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
double r_out = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
r_out += r_gf * dofToQuad(d, q);
|
||||
}
|
||||
out(v, d, e) = r_out;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void GridFuncToQuad3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal_t restrict out) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const int gid = l2gMap(d, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
double r_out = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
r_out += r_gf * dofToQuad(d, q);
|
||||
}
|
||||
out(v, d, e) = r_out;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,79 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void GridFuncToQuad2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal_t restrict out) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_gf[NUM_VDIM][NUM_DOFS];
|
||||
|
||||
for (int dOff = 0; dOff < M2_INNER_BATCH; ++dOff; @inner) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M2_INNER_BATCH) {
|
||||
const int gid = l2gMap(d, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
s_gf[v][d] = gf[v + gid*NUM_VDIM]];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qOff = 0; qOff < M2_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M2_INNER_BATCH) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
double r_out = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_out += s_gf[v][d] * dofToQuad(d, q);
|
||||
}
|
||||
out(v, q, e) = r_out;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void GridFuncToQuad3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal_t restrict out) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_gf[NUM_VDIM][NUM_DOFS];
|
||||
|
||||
for (int dOff = 0; dOff < M3_INNER_BATCH; ++dOff; @inner) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M3_INNER_BATCH) {
|
||||
const int gid = l2gMap(d, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
s_gf[v][d] = gf[v + gid*NUM_VDIM]];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qOff = 0; qOff < M3_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M3_INNER_BATCH) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
double r_out = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_out += s_gf[v][d] * dofToQuad(d, q);
|
||||
}
|
||||
out(v, q, e) = r_out;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,188 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void GridFuncToQuad1D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap1D_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal1D_t restrict out) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double r_out[NUM_VDIM][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_out[v][qx] = 0;
|
||||
}
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const int gid = l2gMap(dx, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_out[v][qx] += r_gf * dofToQuad(qx, dx);
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
out(v, qx, e) = r_out[v][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void GridFuncToQuad2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap2D_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal2D_t restrict out) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double out_xy[NUM_VDIM][NUM_QUAD_1D][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xy[v][qy][qx] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double out_x[NUM_VDIM][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
out_x[v][qy] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const int gid = l2gMap(dx, dy, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
out_x[v][qy] += r_gf * dofToQuad(qy, dx);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double d2q = dofToQuad(qy, dy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xy[v][qy][qx] += d2q * out_x[v][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
out(v, qx, qy, e) = out_xy[v][qy][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void GridFuncToQuad3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap3D_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal3D_t restrict out) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double out_xyz[NUM_VDIM][NUM_QUAD_1D][NUM_QUAD_1D][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xyz[v][qz][qy][qx] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
double out_xy[NUM_VDIM][NUM_QUAD_1D][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xy[v][qy][qx] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double out_x[NUM_VDIM][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_x[v][qx] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const int gid = l2gMap(dx, dy, dz, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_x[v][qx] += r_gf * dofToQuad(qx, dx);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = dofToQuad(qy, dy);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xy[v][qy][qx] += wy * out_x[v][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
const double wz = dofToQuad(qz, dz);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xyz[v][qz][qy][qx] += wz * out_xy[v][qy][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
out(v, qx, qy, qz, e) = out_xyz[v][qz][qy][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,183 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void GridFuncToQuad1D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap1D_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QLocal1D_t restrict out) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M1_ELEMENT_BATCHES; @outer) {
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@exclusive double r_out[NUM_QUAD_1D];
|
||||
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
for (int i = el; i < NUM_QUAD_DOFS_1D; i += M1_INNER_ELEMENT_BATCH) {
|
||||
s_dofToQuad[i] = dofToQuad[i];
|
||||
}
|
||||
}
|
||||
|
||||
for (int b = 0; b < M1_OUTER_ELEMENT_BATCH; ++b) {
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
const int e = eOff + b*M1_INNER_ELEMENT_BATCH + el;
|
||||
if (e < numElements) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_out[qx] = 0;
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double r_gf = gf[l2gMap(dx, e)];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_out[qx] += r_gf * s_dofToQuad(qx, dx);
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out(qx, e) = r_out[qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void GridFuncToQuad2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap2D_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QLocal2D_t restrict out) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M2_ELEMENT_BATCH; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
|
||||
// Store xy planes in shared memory
|
||||
@shared double s_xy[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
for (int id = x; id < NUM_QUAD_DOFS_1D; id += NUM_MAX_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
}
|
||||
}
|
||||
|
||||
for (int e = eOff; e < (eOff + M2_ELEMENT_BATCH); ++e) {
|
||||
if (e < numElements) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if (dx < NUM_DOFS_1D) {
|
||||
double r_x[NUM_DOFS_1D];
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
r_x[dy] = gf[l2gMap(dx, dy, e)];
|
||||
}
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double xy = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
xy += r_x[dy] * s_dofToQuad(qy, dy);
|
||||
}
|
||||
s_xy(dx, qy) = xy;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
if (qy < NUM_QUAD_1D) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
double val = 0;
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
val += s_xy(dx, qy) * s_dofToQuad(qx, dx);
|
||||
}
|
||||
out(qx, qy, e) = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void GridFuncToQuad3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap3D_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QLocal3D_t restrict out) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
|
||||
// Store xy planes in shared memory
|
||||
@shared double s_z[NUM_MAX_2D] @dim(NUM_MAX_1D, NUM_MAX_1D);
|
||||
|
||||
// Store z axis as registers
|
||||
@exclusive double r_qz[NUM_QUAD_1D];
|
||||
|
||||
for (int y = 0; y < NUM_MAX_1D; ++y; @inner) {
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
const int id = (y * NUM_MAX_1D) + x;
|
||||
// Fetch Q <--> D maps
|
||||
if (id < NUM_QUAD_DOFS_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
}
|
||||
// Initialize our Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_qz[qz] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double val = gf[l2gMap(dx, dy, dz, e)];
|
||||
// Calculate D -> Q in the Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_qz[qz] += val * s_dofToQuad(qz, dz);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
// For each xy plane
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
// Fill xy plane at given z position
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
s_z(dx, dy) = r_qz[qz];
|
||||
}
|
||||
}
|
||||
}
|
||||
// Calculate Dxyz, xDyz, xyDz in plane
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
for (int qx = 0; qx < NUM_MAX_1D; ++qx; @inner) {
|
||||
if ((qx < NUM_QUAD_1D) && (qy < NUM_QUAD_1D)) {
|
||||
double val = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = s_dofToQuad(qy, dy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double wx = s_dofToQuad(qx, dx);
|
||||
val += wx * wy * s_z(dx, dy);
|
||||
}
|
||||
}
|
||||
out(qx, qy, qz, e) = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,162 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "interpolation.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
void CreateRPOperators(Layout &v_layout, Layout &t_layout,
|
||||
const mfem::SparseMatrix *R, const mfem::Operator *P,
|
||||
mfem::Operator *&OccaR, mfem::Operator *&OccaP)
|
||||
{
|
||||
if (!P)
|
||||
{
|
||||
OccaR = new IdentityOperator(t_layout);
|
||||
OccaP = new IdentityOperator(t_layout);
|
||||
return;
|
||||
}
|
||||
|
||||
const mfem::SparseMatrix *pmat = dynamic_cast<const mfem::SparseMatrix*>(P);
|
||||
::occa::device device = v_layout.OccaEngine().GetDevice();
|
||||
|
||||
if (R)
|
||||
{
|
||||
OccaSparseMatrix *occaR =
|
||||
CreateMappedSparseMatrix(v_layout, t_layout, *R);
|
||||
::occa::array<int> reorderIndices = occaR->reorderIndices;
|
||||
delete occaR;
|
||||
|
||||
OccaR = new RestrictionOperator(v_layout, t_layout, reorderIndices);
|
||||
}
|
||||
|
||||
if (pmat)
|
||||
{
|
||||
const mfem::SparseMatrix *pmatT = Transpose(*pmat);
|
||||
|
||||
OccaSparseMatrix *occaP =
|
||||
CreateMappedSparseMatrix(t_layout, v_layout, *pmat);
|
||||
OccaSparseMatrix *occaPT =
|
||||
CreateMappedSparseMatrix(v_layout, t_layout, *pmatT);
|
||||
|
||||
OccaP = new ProlongationOperator(*occaP, *occaPT);
|
||||
}
|
||||
else
|
||||
{
|
||||
OccaP = new ProlongationOperator(t_layout, v_layout, P);
|
||||
}
|
||||
}
|
||||
|
||||
RestrictionOperator::RestrictionOperator(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> indices) :
|
||||
Operator(in_layout, out_layout)
|
||||
{
|
||||
|
||||
entries = indices.size() / 2;
|
||||
trueIndices = indices;
|
||||
|
||||
// FIXME: paths ...
|
||||
::occa::device device = in_layout.OccaEngine().GetDevice();
|
||||
const std::string &okl_path = in_layout.OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = in_layout.OccaEngine().GetOklDefines();
|
||||
multOp = device.buildKernel(okl_path + "mappings.okl",
|
||||
"ExtractSubVector",
|
||||
"defines: { TILESIZE: 256 }" + okl_defines);
|
||||
|
||||
multTransposeOp = device.buildKernel(okl_path + "mappings.okl",
|
||||
"SetSubVector",
|
||||
"defines: { TILESIZE: 256 }" +
|
||||
okl_defines);
|
||||
}
|
||||
|
||||
void RestrictionOperator::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
multOp(entries, trueIndices, x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
|
||||
void RestrictionOperator::MultTranspose_(const Vector &x, Vector &y) const
|
||||
{
|
||||
y.Fill<double>(0.0);
|
||||
multTransposeOp(entries, trueIndices, x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
|
||||
ProlongationOperator::ProlongationOperator(OccaSparseMatrix &multOp_,
|
||||
OccaSparseMatrix &multTransposeOp_) :
|
||||
Operator(multOp_),
|
||||
pmat(NULL),
|
||||
multOp(multOp_),
|
||||
multTransposeOp(multTransposeOp_) {}
|
||||
|
||||
ProlongationOperator::ProlongationOperator(Layout &in_layout,
|
||||
Layout &out_layout,
|
||||
const mfem::Operator *pmat_) :
|
||||
Operator(in_layout, out_layout),
|
||||
pmat(pmat_),
|
||||
multOp(*this),
|
||||
multTransposeOp(*this)
|
||||
{ }
|
||||
|
||||
void ProlongationOperator::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_VERIFY(pmat == NULL, "");
|
||||
multOp.Mult_(x, y);
|
||||
}
|
||||
|
||||
void ProlongationOperator::MultTranspose_(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_VERIFY(pmat == NULL, "");
|
||||
multTransposeOp.Mult_(x, y);
|
||||
}
|
||||
|
||||
void ProlongationOperator::Mult(const mfem::Vector &x, mfem::Vector &y) const
|
||||
{
|
||||
if (pmat)
|
||||
{
|
||||
// FIXME: create an OCCA version of 'pmat'
|
||||
x.Pull();
|
||||
y.Pull(false);
|
||||
pmat->Mult(x, y);
|
||||
y.Push();
|
||||
}
|
||||
else
|
||||
{
|
||||
multOp.Mult(x, y);
|
||||
}
|
||||
}
|
||||
|
||||
void ProlongationOperator::MultTranspose(const mfem::Vector &x,
|
||||
mfem::Vector &y) const
|
||||
{
|
||||
if (pmat)
|
||||
{
|
||||
// FIXME: create an OCCA version of 'pmat'
|
||||
x.Pull();
|
||||
y.Pull(false);
|
||||
pmat->MultTranspose(x, y);
|
||||
y.Push();
|
||||
}
|
||||
else
|
||||
{
|
||||
multTransposeOp.Mult(x, y);
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,79 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_INTERPOLATION_HPP
|
||||
#define MFEM_BACKENDS_OCCA_INTERPOLATION_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
#include "vector.hpp"
|
||||
#include "engine.hpp"
|
||||
#include "sparsemat.hpp"
|
||||
#include "../../fem/fem.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
// [MISSING] Proper destructors
|
||||
void CreateRPOperators(Layout &v_layout, Layout &t_layout,
|
||||
const mfem::SparseMatrix *R, const mfem::Operator *P,
|
||||
mfem::Operator *&OccaR, mfem::Operator *&OccaP);
|
||||
|
||||
class RestrictionOperator : public Operator
|
||||
{
|
||||
protected:
|
||||
int entries;
|
||||
::occa::array<int> trueIndices;
|
||||
::occa::kernel multOp, multTransposeOp;
|
||||
|
||||
public:
|
||||
RestrictionOperator(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> indices);
|
||||
|
||||
// overrides
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
virtual void MultTranspose_(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
class ProlongationOperator : public Operator
|
||||
{
|
||||
protected:
|
||||
const mfem::Operator *pmat;
|
||||
OccaSparseMatrix multOp, multTransposeOp;
|
||||
|
||||
public:
|
||||
ProlongationOperator(OccaSparseMatrix &multOp_,
|
||||
OccaSparseMatrix &multTransposeOp_);
|
||||
|
||||
ProlongationOperator(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::Operator *pmat_);
|
||||
|
||||
// overrides
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
virtual void MultTranspose_(const Vector &x, Vector &y) const;
|
||||
|
||||
// overrides
|
||||
virtual void Mult(const mfem::Vector &x, mfem::Vector &y) const;
|
||||
virtual void MultTranspose(const mfem::Vector &x, mfem::Vector &y) const;
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_INTERPOLATION_HPP
|
||||
@@ -9,35 +9,32 @@
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_OCCA_HPP
|
||||
#define MFEM_OCCA_HPP
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "../config/config.hpp"
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
#include <occa.hpp>
|
||||
|
||||
#if defined(MFEM_USE_CUDA) && OCCA_CUDA_ENABLED
|
||||
#include <occa/modes/cuda/utils.hpp>
|
||||
#endif
|
||||
|
||||
typedef occa::device OccaDevice;
|
||||
typedef occa::memory OccaMemory;
|
||||
|
||||
#else // MFEM_USE_OCCA
|
||||
|
||||
typedef void* OccaDevice;
|
||||
typedef void* OccaMemory;
|
||||
|
||||
#endif // MFEM_USE_OCCA
|
||||
#include "layout.hpp"
|
||||
#include "../../general/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// Function called when the pointer 'a' needs to be passed to an OCCA kernel.
|
||||
OccaMemory OccaPtr(const void *a);
|
||||
OccaDevice OccaDev();
|
||||
namespace occa
|
||||
{
|
||||
|
||||
void Layout::Resize(std::size_t new_size)
|
||||
{
|
||||
size = new_size;
|
||||
}
|
||||
|
||||
void Layout::Resize(const Array<std::size_t> &offsets)
|
||||
{
|
||||
MFEM_ASSERT(offsets.Size() == 2,
|
||||
"multiple workers are not supported yet");
|
||||
size = offsets.Last();
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_OCCA_HPP
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,68 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_LAYOUT_HPP
|
||||
#define MFEM_BACKENDS_OCCA_LAYOUT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "../base/layout.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Layout : public PLayout
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// std::size_t size;
|
||||
|
||||
public:
|
||||
Layout(const Engine &e, std::size_t s = 0) : PLayout(e, s) { }
|
||||
|
||||
const Engine &OccaEngine() const
|
||||
{ return *static_cast<const Engine *>(engine.Get()); }
|
||||
|
||||
::occa::memory Alloc(std::size_t bytes) const
|
||||
{ return OccaEngine().GetDevice().malloc(bytes); }
|
||||
|
||||
virtual ~Layout() { }
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/// Resize the layout
|
||||
virtual void Resize(std::size_t new_size);
|
||||
|
||||
/// Resize the layout based on the given worker offsets
|
||||
virtual void Resize(const Array<std::size_t> &offsets);
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_LAYOUT_HPP
|
||||
@@ -0,0 +1,54 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
TILESIZE : Tilesize for iterating over entries
|
||||
================================================
|
||||
*/
|
||||
|
||||
@kernel void ExtractSubVector(const int entries,
|
||||
const int * restrict indices,
|
||||
const double * restrict in,
|
||||
double * restrict out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
out[i] = in[indices[i]];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void SetSubVector(const int entries,
|
||||
const int * restrict indices,
|
||||
const double * restrict in,
|
||||
double * restrict out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
out[indices[i]] = in[i];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MapSubVector(const int entries,
|
||||
const int * restrict indices,
|
||||
const double * restrict in,
|
||||
double * restrict out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
const int fromIdx = indices[2*i + 0];
|
||||
const int toIdx = indices[2*i + 1];
|
||||
out[toIdx] = in[fromIdx];
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,135 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "operator.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
// FIXME: move this object to the Backend?
|
||||
::occa::kernelBuilder OccaConstrainedOperator::mapDofBuilder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"vector_map_dofs",
|
||||
|
||||
"const int idx = v2[i];"
|
||||
"v0[idx] = v1[idx];",
|
||||
|
||||
"defines: {"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" VTYPE2: 'int',"
|
||||
" TILESIZE: 128,"
|
||||
"}");
|
||||
|
||||
// FIXME: move this object to the Backend?
|
||||
::occa::kernelBuilder OccaConstrainedOperator::clearDofBuilder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"vector_clear_dofs",
|
||||
|
||||
"v0[v1[i]] = 0.0;",
|
||||
|
||||
"defines: {"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'int',"
|
||||
" TILESIZE: 128,"
|
||||
"}");
|
||||
|
||||
OccaConstrainedOperator::OccaConstrainedOperator(
|
||||
mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraintList_,
|
||||
bool own_A_)
|
||||
|
||||
: Operator(A_->InLayout()->As<Layout>()),
|
||||
z(OutLayout_()),
|
||||
w(OutLayout_()),
|
||||
mfem_z((z.DontDelete(), z)),
|
||||
mfem_w((w.DontDelete(), w))
|
||||
{
|
||||
Setup(OutLayout_().OccaEngine().GetDevice(), A_, constraintList_, own_A_);
|
||||
}
|
||||
|
||||
void OccaConstrainedOperator::Setup(::occa::device device_,
|
||||
mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraintList_,
|
||||
bool own_A_)
|
||||
{
|
||||
device = device_;
|
||||
|
||||
A = A_;
|
||||
own_A = own_A_;
|
||||
|
||||
constraintIndices = constraintList_.Size();
|
||||
constraintList = constraintList_.Get_PArray()->As<Array>().OccaMem();
|
||||
}
|
||||
|
||||
void OccaConstrainedOperator::EliminateRHS(const Vector &x, Vector &b) const
|
||||
{
|
||||
const std::string &okl_defines = InLayout_().OccaEngine().GetOklDefines();
|
||||
::occa::kernel mapDofs = mapDofBuilder.build(device, okl_defines);
|
||||
|
||||
w.Fill<double>(0.0);
|
||||
|
||||
if (constraintIndices)
|
||||
{
|
||||
mapDofs(constraintIndices, w.OccaMem(), x.OccaMem(), constraintList);
|
||||
}
|
||||
|
||||
A->Mult(mfem_w, mfem_z);
|
||||
|
||||
b.Axpby<double>(1.0, b, -1.0, z);
|
||||
|
||||
if (constraintIndices)
|
||||
{
|
||||
mapDofs(constraintIndices, b.OccaMem(), x.OccaMem(), constraintList);
|
||||
}
|
||||
}
|
||||
|
||||
void OccaConstrainedOperator::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
mfem::Vector mfem_y(y);
|
||||
if (constraintIndices == 0)
|
||||
{
|
||||
A->Mult(x.Wrap(), mfem_y);
|
||||
return;
|
||||
}
|
||||
|
||||
const std::string &okl_defines = InLayout_().OccaEngine().GetOklDefines();
|
||||
::occa::kernel mapDofs = mapDofBuilder.build(device, okl_defines);
|
||||
::occa::kernel clearDofs = clearDofBuilder.build(device, okl_defines);
|
||||
|
||||
z.Assign<double>(x); // z = x
|
||||
|
||||
clearDofs(constraintIndices, z.OccaMem(), constraintList);
|
||||
|
||||
A->Mult(mfem_z, mfem_y);
|
||||
|
||||
mapDofs(constraintIndices, y.OccaMem(), x.OccaMem(), constraintList);
|
||||
}
|
||||
|
||||
OccaConstrainedOperator::~OccaConstrainedOperator()
|
||||
{
|
||||
if (own_A)
|
||||
{
|
||||
delete A;
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,129 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_OPERATOR_HPP
|
||||
#define MFEM_BACKENDS_OCCA_OPERATOR_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "../../linalg/operator.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Operator : public mfem::Operator
|
||||
{
|
||||
public:
|
||||
/// Creare an operator with the same dimensions as @a orig.
|
||||
Operator(const Operator &orig)
|
||||
: mfem::Operator(orig) { }
|
||||
|
||||
Operator(Layout &layout)
|
||||
: mfem::Operator(layout) { }
|
||||
|
||||
Operator(Layout &in_layout, Layout &out_layout)
|
||||
: mfem::Operator(in_layout, out_layout) { }
|
||||
|
||||
Layout &InLayout_() const
|
||||
{ return *static_cast<Layout*>(in_layout.Get()); }
|
||||
|
||||
Layout &OutLayout_() const
|
||||
{ return *static_cast<Layout*>(out_layout.Get()); }
|
||||
|
||||
virtual void Mult_(const Vector &x, Vector &y) const = 0;
|
||||
|
||||
virtual void MultTranspose_(const Vector &x, Vector &y) const
|
||||
{ MFEM_ABORT("method is not supported"); }
|
||||
|
||||
// override
|
||||
virtual void Mult(const mfem::Vector &x, mfem::Vector &y) const
|
||||
{
|
||||
Mult_(x.Get_PVector()->As<Vector>(),
|
||||
y.Get_PVector()->As<Vector>());
|
||||
}
|
||||
|
||||
// override
|
||||
virtual void MultTranspose(const mfem::Vector &x, mfem::Vector &y) const
|
||||
{
|
||||
MultTranspose_(x.Get_PVector()->As<Vector>(),
|
||||
y.Get_PVector()->As<Vector>());
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
class OccaConstrainedOperator : public Operator
|
||||
{
|
||||
protected:
|
||||
::occa::device device;
|
||||
|
||||
mfem::Operator *A; //< The unconstrained Operator.
|
||||
bool own_A; //< Ownership flag for A.
|
||||
::occa::memory constraintList; //< List of constrained indices/dofs.
|
||||
int constraintIndices;
|
||||
mutable Vector z, w; //< Auxiliary vectors.
|
||||
mutable mfem::Vector mfem_z, mfem_w; // Wrap z, w
|
||||
|
||||
static ::occa::kernelBuilder mapDofBuilder, clearDofBuilder;
|
||||
|
||||
public:
|
||||
/** @brief Constructor from a general Operator and a list of essential
|
||||
indices/dofs.
|
||||
|
||||
Specify the unconstrained operator @a *A and a @a list of indices to
|
||||
constrain, i.e. each entry @a list[i] represents an essential-dof. If the
|
||||
ownership flag @a own_A is true, the operator @a *A will be destroyed
|
||||
when this object is destroyed. */
|
||||
OccaConstrainedOperator(mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraintList_,
|
||||
bool own_A_ = false);
|
||||
|
||||
void Setup(::occa::device device_,
|
||||
mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraintList_,
|
||||
bool own_A_ = false);
|
||||
|
||||
/** @brief Eliminate "essential boundary condition" values specified in @a x
|
||||
from the given right-hand side @a b.
|
||||
|
||||
Performs the following steps:
|
||||
|
||||
z = A((0,x_b)); b_i -= z_i; b_b = x_b;
|
||||
|
||||
where the "_b" subscripts denote the essential (boundary) indices/dofs of
|
||||
the vectors, and "_i" -- the rest of the entries. */
|
||||
void EliminateRHS(const Vector &x, Vector &b) const;
|
||||
|
||||
/** @brief Constrained operator action.
|
||||
|
||||
Performs the following steps:
|
||||
|
||||
z = A((x_i,0)); y_i = z_i; y_b = x_b;
|
||||
|
||||
where the "_b" subscripts denote the essential (boundary) indices/dofs of
|
||||
the vectors, and "_i" -- the rest of the entries. */
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
|
||||
// Destructor: destroys the unconstrained Operator @a A if @a own_A is true.
|
||||
virtual ~OccaConstrainedOperator();
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_OPERATOR_HPP
|
||||
@@ -0,0 +1,57 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
TILESIZE : Tilesize for iterating over dofs
|
||||
================================================
|
||||
*/
|
||||
|
||||
@kernel void Mult(const int entries,
|
||||
const int * restrict offsets,
|
||||
const int * restrict indices,
|
||||
const double * restrict weights,
|
||||
const double * restrict in,
|
||||
double * restrict out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
const int offset = offsets[i];
|
||||
const int nextOffset = offsets[i + 1];
|
||||
double value = 0;
|
||||
for (int j = offset; j < nextOffset; ++j) {
|
||||
value += weights[j] * in[indices[j]];
|
||||
}
|
||||
out[i] = value;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MappedMult(const int entries,
|
||||
const int * restrict offsets,
|
||||
const int * restrict indices,
|
||||
const double * restrict weights,
|
||||
const int * restrict outIndices,
|
||||
const double * restrict in,
|
||||
double * restrict out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
const int offset = offsets[i];
|
||||
const int nextOffset = offsets[i + 1];
|
||||
double value = 0;
|
||||
for (int j = offset; j < nextOffset; ++j) {
|
||||
value += weights[j] * in[indices[j]];
|
||||
}
|
||||
out[outIndices[i]] = value;
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,248 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "sparsemat.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
OccaSparseMatrix::OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props) :
|
||||
Operator(in_layout, out_layout)
|
||||
{
|
||||
|
||||
Setup(in_layout.OccaEngine().GetDevice(), m, props);
|
||||
}
|
||||
|
||||
OccaSparseMatrix::OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props) :
|
||||
Operator(in_layout, out_layout)
|
||||
{
|
||||
|
||||
Setup(in_layout.OccaEngine().GetDevice(), m,
|
||||
reorderIndices, mappedIndices_, props);
|
||||
}
|
||||
|
||||
OccaSparseMatrix::OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> offsets_,
|
||||
::occa::array<int> indices_,
|
||||
::occa::array<double> weights_,
|
||||
const ::occa::properties &props) :
|
||||
Operator(in_layout, out_layout),
|
||||
offsets(offsets_),
|
||||
indices(indices_),
|
||||
weights(weights_)
|
||||
{
|
||||
|
||||
SetupKernel(in_layout.OccaEngine().GetDevice(), props);
|
||||
}
|
||||
|
||||
OccaSparseMatrix::OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> offsets_,
|
||||
::occa::array<int> indices_,
|
||||
::occa::array<double> weights_,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props) :
|
||||
Operator(in_layout, out_layout),
|
||||
offsets(offsets_),
|
||||
indices(indices_),
|
||||
weights(weights_),
|
||||
reorderIndices(reorderIndices_),
|
||||
mappedIndices(mappedIndices_)
|
||||
{
|
||||
|
||||
SetupKernel(in_layout.OccaEngine().GetDevice(), props);
|
||||
}
|
||||
|
||||
void OccaSparseMatrix::Setup(::occa::device device, const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
Setup(device, m, ::occa::array<int>(), ::occa::array<int>(), props);
|
||||
}
|
||||
|
||||
void OccaSparseMatrix::Setup(::occa::device device, const SparseMatrix &m,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
|
||||
const int nnz = m.GetI()[height];
|
||||
offsets.allocate(device,
|
||||
height + 1, m.GetI());
|
||||
indices.allocate(device,
|
||||
nnz, m.GetJ());
|
||||
weights.allocate(device,
|
||||
nnz, m.GetData());
|
||||
|
||||
offsets.keepInDevice();
|
||||
indices.keepInDevice();
|
||||
weights.keepInDevice();
|
||||
|
||||
reorderIndices = reorderIndices_;
|
||||
mappedIndices = mappedIndices_;
|
||||
|
||||
SetupKernel(device, props);
|
||||
}
|
||||
|
||||
void OccaSparseMatrix::SetupKernel(::occa::device device,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
|
||||
const bool hasOutIndices = mappedIndices.isInitialized();
|
||||
|
||||
const ::occa::properties defaultProps("defines: {"
|
||||
" TILESIZE: 256,"
|
||||
"}");
|
||||
|
||||
const std::string &okl_path = InLayout_().OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = InLayout_().OccaEngine().GetOklDefines();
|
||||
mapKernel = device.buildKernel(okl_path + "mappings.okl",
|
||||
"MapSubVector",
|
||||
defaultProps + props + okl_defines);
|
||||
|
||||
multKernel = device.buildKernel(okl_path + "sparse.okl",
|
||||
hasOutIndices ? "MappedMult" : "Mult",
|
||||
defaultProps + props + okl_defines);
|
||||
}
|
||||
|
||||
void OccaSparseMatrix::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (reorderIndices.isInitialized() ||
|
||||
mappedIndices.isInitialized())
|
||||
{
|
||||
if (reorderIndices.isInitialized())
|
||||
{
|
||||
mapKernel((int) (reorderIndices.size() / 2),
|
||||
reorderIndices,
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
if (mappedIndices.isInitialized())
|
||||
{
|
||||
multKernel((int) (mappedIndices.size()),
|
||||
offsets, indices, weights,
|
||||
mappedIndices,
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
multKernel((int) height,
|
||||
offsets, indices, weights,
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
OccaSparseMatrix* CreateMappedSparseMatrix(Layout &in_layout,
|
||||
Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
const int mHeight = m.Height();
|
||||
// const int mWidth = m.Width();
|
||||
|
||||
// Count indices that are only reordered (true dofs)
|
||||
const int *I = m.GetI();
|
||||
const int *J = m.GetJ();
|
||||
const double *D = m.GetData();
|
||||
|
||||
int trueCount = 0;
|
||||
for (int i = 0; i < mHeight; ++i)
|
||||
{
|
||||
trueCount += ((I[i + 1] - I[i]) == 1);
|
||||
}
|
||||
const int dupCount = (mHeight - trueCount);
|
||||
|
||||
// Create the reordering map for entries that aren't modified (true dofs)
|
||||
::occa::device device(in_layout.OccaEngine().GetDevice());
|
||||
::occa::array<int> reorderIndices(device,
|
||||
2 * trueCount);
|
||||
::occa::array<int> mappedIndices, offsets, indices;
|
||||
::occa::array<double> weights;
|
||||
|
||||
if (dupCount)
|
||||
{
|
||||
mappedIndices.allocate(device,
|
||||
dupCount);
|
||||
}
|
||||
int trueIdx = 0, dupIdx = 0;
|
||||
for (int i = 0; i < mHeight; ++i)
|
||||
{
|
||||
const int i1 = I[i];
|
||||
if ((I[i + 1] - i1) == 1)
|
||||
{
|
||||
reorderIndices[trueIdx++] = J[i1];
|
||||
reorderIndices[trueIdx++] = i;
|
||||
}
|
||||
else
|
||||
{
|
||||
mappedIndices[dupIdx++] = i;
|
||||
}
|
||||
}
|
||||
reorderIndices.keepInDevice();
|
||||
|
||||
if (dupCount)
|
||||
{
|
||||
mappedIndices.keepInDevice();
|
||||
|
||||
// Extract sparse matrix without reordered identity
|
||||
const int dupNnz = I[mHeight] - trueCount;
|
||||
|
||||
offsets.allocate(device,
|
||||
dupCount + 1);
|
||||
indices.allocate(device,
|
||||
dupNnz);
|
||||
weights.allocate(device,
|
||||
dupNnz);
|
||||
|
||||
int nnz = 0;
|
||||
offsets[0] = 0;
|
||||
for (int i = 0; i < dupCount; ++i)
|
||||
{
|
||||
const int idx = mappedIndices[i];
|
||||
const int offStart = I[idx];
|
||||
const int offEnd = I[idx + 1];
|
||||
offsets[i + 1] = offsets[i] + (offEnd - offStart);
|
||||
for (int j = offStart; j < offEnd; ++j)
|
||||
{
|
||||
indices[nnz] = J[j];
|
||||
weights[nnz] = D[j];
|
||||
++nnz;
|
||||
}
|
||||
}
|
||||
|
||||
offsets.keepInDevice();
|
||||
indices.keepInDevice();
|
||||
weights.keepInDevice();
|
||||
}
|
||||
|
||||
return new OccaSparseMatrix(in_layout, out_layout,
|
||||
offsets, indices, weights,
|
||||
reorderIndices, mappedIndices,
|
||||
props);
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,95 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_SPARSE_MAT_HPP
|
||||
#define MFEM_BACKENDS_OCCA_SPARSE_MAT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
#include "vector.hpp"
|
||||
#include "engine.hpp"
|
||||
#include "operator.hpp"
|
||||
#include "../../linalg/sparsemat.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
/// TODO: doxygen
|
||||
class OccaSparseMatrix : public Operator
|
||||
{
|
||||
public:
|
||||
::occa::array<int> offsets, indices;
|
||||
::occa::array<double> weights;
|
||||
::occa::array<int> reorderIndices, mappedIndices;
|
||||
::occa::kernel mapKernel, multKernel;
|
||||
|
||||
/// Construct an empty OccaSparseMatrix.
|
||||
OccaSparseMatrix(const Operator &orig)
|
||||
: Operator(orig) { }
|
||||
|
||||
OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props = ::occa::properties());
|
||||
|
||||
OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props = ::occa::properties());
|
||||
|
||||
OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> offsets_,
|
||||
::occa::array<int> indices_,
|
||||
::occa::array<double> weights_,
|
||||
const ::occa::properties &props = ::occa::properties());
|
||||
|
||||
OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> offsets_,
|
||||
::occa::array<int> indices_,
|
||||
::occa::array<double> weights_,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props = ::occa::properties());
|
||||
|
||||
void Setup(::occa::device device, const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props);
|
||||
|
||||
void Setup(::occa::device device, const mfem::SparseMatrix &m,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props);
|
||||
|
||||
void SetupKernel(::occa::device device,
|
||||
const ::occa::properties &props);
|
||||
|
||||
// override
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
|
||||
/// TODO: doxygen
|
||||
OccaSparseMatrix* CreateMappedSparseMatrix(
|
||||
Layout &in_layout, Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props = ::occa::properties());
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_SPARSE_MAT_HPP
|
||||
@@ -0,0 +1,81 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "url_handler.hpp"
|
||||
#include "../../general/error.hpp"
|
||||
#include <cstdlib>
|
||||
#include <sys/stat.h>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
FileOpener::FileOpener(const std::string &prefix,
|
||||
const std::string &env_variable)
|
||||
: pfx(prefix)
|
||||
{
|
||||
const char *env_path = getenv(env_variable.c_str());
|
||||
if (!env_path) { return; }
|
||||
std::string path(env_path);
|
||||
for (std::size_t start = 0, end; start < path.size(); start = end + 1)
|
||||
{
|
||||
end = path.find(':', start);
|
||||
if (end == std::string::npos)
|
||||
{
|
||||
AddDir(path.substr(start, end));
|
||||
break;
|
||||
}
|
||||
AddDir(path.substr(start, end - start));
|
||||
}
|
||||
}
|
||||
|
||||
bool FileOpener::AddDir(const std::string &dir)
|
||||
{
|
||||
if (dir.size() == 0 || dir[0] != '/') { return false; }
|
||||
struct stat dir_stat;
|
||||
if (stat(dir.c_str(), &dir_stat)) { return false; }
|
||||
if (!S_ISDIR(dir_stat.st_mode)) { return false; }
|
||||
paths.push_back(dir + (*dir.rbegin() == '/' ? "" : "/"));
|
||||
return true;
|
||||
}
|
||||
|
||||
bool FileOpener::handles(const std::string &filename)
|
||||
{
|
||||
return filename.size() >= pfx.size() &&
|
||||
filename.compare(0, pfx.size(), pfx) == 0;
|
||||
}
|
||||
|
||||
std::string FileOpener::expand(const std::string &filename)
|
||||
{
|
||||
std::string sfx(filename.substr(pfx.size()));
|
||||
for (std::size_t i = 0; i < paths.size(); i++)
|
||||
{
|
||||
std::string file = paths[i] + sfx;
|
||||
struct stat file_stat;
|
||||
if (stat(file.c_str(), &file_stat) == 0 && S_ISREG(file_stat.st_mode))
|
||||
{
|
||||
return file;
|
||||
}
|
||||
}
|
||||
MFEM_ABORT("invalid url: " << filename);
|
||||
return sfx;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,47 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_URL_HANDLER_HPP
|
||||
#define MFEM_BACKENDS_OCCA_URL_HANDLER_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class FileOpener : public ::occa::io::fileOpener
|
||||
{
|
||||
protected:
|
||||
std::string pfx; // prefix, e.g. "mfem://"
|
||||
std::vector<std::string> paths; // paths to search for prefix replacement
|
||||
|
||||
public:
|
||||
FileOpener(const std::string &prefix, const std::string &env_variable);
|
||||
|
||||
bool AddDir(const std::string &dir);
|
||||
|
||||
virtual bool handles(const std::string &filename);
|
||||
virtual std::string expand(const std::string &filename);
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_URL_HANDLER_HPP
|
||||
@@ -9,20 +9,14 @@
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem.hpp"
|
||||
using namespace mfem;
|
||||
typedef double* Local_t @dim(numDofs, numElements);
|
||||
|
||||
#include "catch.hpp"
|
||||
#include "general/text.hpp"
|
||||
|
||||
TEST_CASE("String Manipulation", "[General]")
|
||||
{
|
||||
SECTION("String Conversion")
|
||||
{
|
||||
SECTION("Integer")
|
||||
{
|
||||
REQUIRE(to_int(to_string(12)) == 12);
|
||||
REQUIRE(to_int(to_string(-1234)) == -1234);
|
||||
}
|
||||
}
|
||||
@kernel void InitLocalVector(const int numElements,
|
||||
const int numDofs,
|
||||
Local_t restrict sol) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int d = 0; d < numDofs; ++d; @inner) {
|
||||
sol(d, e) = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,204 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "../../linalg/vector.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
PVector *Vector::DoVectorClone(bool copy_data, void **buffer,
|
||||
int buffer_type_id) const
|
||||
{
|
||||
MFEM_ASSERT(buffer_type_id == ScalarId<double>::value, "");
|
||||
Vector *new_vector = new Vector(OccaLayout());
|
||||
if (copy_data)
|
||||
{
|
||||
new_vector->slice.copyFrom(slice);
|
||||
}
|
||||
if (buffer)
|
||||
{
|
||||
*buffer = new_vector->GetBuffer();
|
||||
}
|
||||
return new_vector;
|
||||
}
|
||||
|
||||
void Vector::DoDotProduct(const PVector &x, void *result,
|
||||
int result_type_id) const
|
||||
{
|
||||
// Can be called when Size() == 0, e.g. when an MPI-parallel vector has a
|
||||
// local size of 0.
|
||||
|
||||
MFEM_ASSERT(result_type_id == ScalarId<double>::value, "");
|
||||
double *res = (double *)result;
|
||||
MFEM_ASSERT(dynamic_cast<const Vector *>(&x) != NULL, "invalid Vector type");
|
||||
const Vector *xp = static_cast<const Vector *>(&x);
|
||||
MFEM_ASSERT(this->Size() == xp->Size(), "");
|
||||
*res = ::occa::linalg::dot<double, double, double>(this->slice, xp->slice);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
double local_dot = *res;
|
||||
if (IsParallel())
|
||||
{
|
||||
MPI_Allreduce(&local_dot, res, 1, MPI_DOUBLE, MPI_SUM,
|
||||
OccaLayout().OccaEngine().GetComm());
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
void Vector::DoAxpby(const void *a, const PVector &x,
|
||||
const void *b, const PVector &y,
|
||||
int ab_type_id)
|
||||
{
|
||||
const std::string &okl_defines = OccaLayout().OccaEngine().GetOklDefines();
|
||||
|
||||
//
|
||||
// TODO: move all kernel builders to class mfem::occa::Backend
|
||||
//
|
||||
static ::occa::kernelBuilder axpby1_builder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"mfem_occa_axpby1",
|
||||
"v0[i] = c0 * v1[i];",
|
||||
"defines: {"
|
||||
" CTYPE0: 'double',"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" TILESIZE: '128',"
|
||||
"}");
|
||||
|
||||
static ::occa::kernelBuilder axpby2_builder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"mfem_occa_axpby2",
|
||||
"v0[i] = c0 * v0[i] + c1 * v1[i];",
|
||||
"defines: {"
|
||||
" CTYPE0: 'double',"
|
||||
" CTYPE1: 'double',"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" TILESIZE: '128',"
|
||||
"}");
|
||||
|
||||
static ::occa::kernelBuilder axpby3_builder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"mfem_occa_axpby3",
|
||||
"v0[i] = c0 * v1[i] + c1 * v2[i];",
|
||||
"defines: {"
|
||||
" CTYPE0: 'double',"
|
||||
" CTYPE1: 'double',"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" VTYPE2: 'double',"
|
||||
" TILESIZE: '128',"
|
||||
"}");
|
||||
|
||||
// called only when Size() != 0
|
||||
|
||||
MFEM_ASSERT(ab_type_id == ScalarId<double>::value, "");
|
||||
const double da = *static_cast<const double *>(a);
|
||||
const double db = *static_cast<const double *>(b);
|
||||
MFEM_ASSERT(da == 0.0 || dynamic_cast<const Vector *>(&x) != NULL,
|
||||
"invalid Vector x");
|
||||
MFEM_ASSERT(db == 0.0 || dynamic_cast<const Vector *>(&y) != NULL,
|
||||
"invalid Vector y");
|
||||
const Vector *xp = static_cast<const Vector *>(&x);
|
||||
const Vector *yp = static_cast<const Vector *>(&y);
|
||||
|
||||
MFEM_ASSERT(da == 0.0 || this->Size() == xp->Size(), "");
|
||||
MFEM_ASSERT(db == 0.0 || this->Size() == yp->Size(), "");
|
||||
|
||||
if (da == 0.0)
|
||||
{
|
||||
if (db == 0.0)
|
||||
{
|
||||
OccaFill(&da);
|
||||
}
|
||||
else
|
||||
{
|
||||
if (this->slice == yp->slice)
|
||||
{
|
||||
// *this *= db
|
||||
::occa::linalg::operator_mult_eq(slice, db);
|
||||
}
|
||||
else
|
||||
{
|
||||
// *this = db * y
|
||||
::occa::kernel kernel = axpby1_builder.build(slice.getDevice(),
|
||||
okl_defines);
|
||||
kernel((int)Size(), db, slice, yp->slice);
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
if (db == 0.0)
|
||||
{
|
||||
if (this->slice == xp->slice)
|
||||
{
|
||||
// *this *= da
|
||||
::occa::linalg::operator_mult_eq(slice, da);
|
||||
}
|
||||
else
|
||||
{
|
||||
// *this = da * x
|
||||
::occa::kernel kernel = axpby1_builder.build(slice.getDevice(),
|
||||
okl_defines);
|
||||
kernel((int)Size(), da, slice, xp->slice);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ASSERT(xp->slice != yp->slice, "invalid input");
|
||||
if (this->slice == xp->slice)
|
||||
{
|
||||
// *this = da * (*this) + db * y
|
||||
::occa::kernel kernel = axpby2_builder.build(slice.getDevice(),
|
||||
okl_defines);
|
||||
kernel((int)Size(), da, db, slice, yp->slice);
|
||||
}
|
||||
else if (this->slice == yp->slice)
|
||||
{
|
||||
// *this = da * x + db * (*this)
|
||||
::occa::kernel kernel = axpby2_builder.build(slice.getDevice(),
|
||||
okl_defines);
|
||||
kernel((int)Size(), db, da, slice, xp->slice);
|
||||
}
|
||||
else
|
||||
{
|
||||
// *this = da * x + db * y
|
||||
::occa::kernel kernel = axpby3_builder.build(slice.getDevice(),
|
||||
okl_defines);
|
||||
kernel((int)Size(), da, db, slice, xp->slice, yp->slice);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
mfem::Vector Vector::Wrap()
|
||||
{
|
||||
return mfem::Vector(*this);
|
||||
}
|
||||
|
||||
const mfem::Vector Vector::Wrap() const
|
||||
{
|
||||
return mfem::Vector(*const_cast<Vector*>(this));
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,74 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_VECTOR_HPP
|
||||
#define MFEM_BACKENDS_OCCA_VECTOR_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
#include "../base/vector.hpp"
|
||||
#include "array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Vector : virtual public Array, public PVector
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// DLayout layout;
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
virtual PVector *DoVectorClone(bool copy_data, void **buffer,
|
||||
int buffer_type_id) const;
|
||||
|
||||
virtual void DoDotProduct(const PVector &x, void *result,
|
||||
int result_type_id) const;
|
||||
|
||||
virtual void DoAxpby(const void *a, const PVector &x,
|
||||
const void *b, const PVector &y,
|
||||
int ab_type_id);
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
|
||||
public:
|
||||
Vector(Layout <)
|
||||
: PArray(lt), Array(lt, sizeof(double)), PVector(lt)
|
||||
{ }
|
||||
|
||||
mfem::Vector Wrap();
|
||||
|
||||
const mfem::Vector Wrap() const;
|
||||
|
||||
#if defined(MFEM_USE_MPI)
|
||||
bool IsParallel() const { return (OccaLayout().OccaEngine().GetComm() != MPI_COMM_NULL); }
|
||||
#endif
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_VECTOR_HPP
|
||||
@@ -0,0 +1,675 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && \
|
||||
defined(MFEM_USE_OMP) && \
|
||||
defined(MFEM_USE_ACROTENSOR)
|
||||
|
||||
#include "adiffusioninteg.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
PAIntegrator::PAIntegrator(Coefficient &q, FiniteElementSpace &f)
|
||||
{
|
||||
Q = &q;
|
||||
ofes = &f;
|
||||
fes = ofes->GetFESpace();
|
||||
onGPU = (ofes->OmpEngine().ExecTarget() == Device);
|
||||
fe = fes->GetFE(0);
|
||||
tfe = dynamic_cast<const TensorBasisElement*>(fe);
|
||||
if (tfe)
|
||||
{
|
||||
tDofMap = tfe->GetDofMap();
|
||||
}
|
||||
else
|
||||
{
|
||||
tDofMap.SetSize(nDof);
|
||||
for (int i = 0; i < nDof; ++i)
|
||||
{
|
||||
tDofMap[i] = i;
|
||||
}
|
||||
}
|
||||
|
||||
nElem = fes->GetNE();
|
||||
GeomType = fe->GetGeomType();
|
||||
FEOrder = fe->GetOrder();
|
||||
nDim = fe->GetDim();
|
||||
nDof = fe->GetDof();
|
||||
|
||||
ElementTransformation *Trans = fes->GetElementTransformation(0);
|
||||
int irorder = 2*fe->GetOrder() + Trans->OrderW();
|
||||
ir = &IntRules.Get(GeomType, irorder);
|
||||
nQuad = ir->GetNPoints();
|
||||
hasTensorBasis = tfe ? true : false;
|
||||
|
||||
if (nDim > 3)
|
||||
{
|
||||
mfem_error("AcroIntegrator tensor computations don't support dim > 3.");
|
||||
}
|
||||
}
|
||||
|
||||
PAIntegrator::~PAIntegrator()
|
||||
{
|
||||
|
||||
}
|
||||
|
||||
AcroDiffusionIntegrator::AcroDiffusionIntegrator(Coefficient &q, FiniteElementSpace &f) :
|
||||
PAIntegrator(q,f)
|
||||
{
|
||||
if (onGPU)
|
||||
{
|
||||
//TE.SetExecutorType("OneOutPerThread");
|
||||
TE.SetExecutorType("Cuda");
|
||||
//TODO: Set to an existing cuda context if one exists
|
||||
}
|
||||
else
|
||||
{
|
||||
TE.SetExecutorType("CPUInterpreted");
|
||||
}
|
||||
|
||||
const IntegrationRule *ir1D = &IntRules.Get(Geometry::SEGMENT, ir->GetOrder());
|
||||
nDof1D = FEOrder + 1;
|
||||
nQuad1D = ir1D->GetNPoints();
|
||||
|
||||
if (hasTensorBasis)
|
||||
{
|
||||
H1_FECollection fec(FEOrder,1);
|
||||
const FiniteElement *fe1D = fec.FiniteElementForGeometry(Geometry::SEGMENT);
|
||||
mfem::Vector eval(nDof1D);
|
||||
DenseMatrix deval(nDof1D,1);
|
||||
B.Init(nQuad1D, nDof1D);
|
||||
G.Init(nQuad1D, nDof1D);
|
||||
std::vector<int> wdims(nDim, nQuad1D);
|
||||
W.Init(wdims);
|
||||
|
||||
mfem::Vector w(nQuad1D);
|
||||
for (int k = 0; k < nQuad1D; ++k)
|
||||
{
|
||||
const IntegrationPoint &ip = ir1D->IntPoint(k);
|
||||
fe1D->CalcShape(ip, eval);
|
||||
fe1D->CalcDShape(ip, deval);
|
||||
|
||||
B(k,0) = eval(0);
|
||||
B(k,nDof1D-1) = eval(1);
|
||||
G(k,0) = deval(0,0);
|
||||
G(k,nDof1D-1) = deval(1,0);
|
||||
for (int i = 1; i < nDof1D-1; ++i)
|
||||
{
|
||||
B(k,i) = eval(i+1);
|
||||
G(k,i) = deval(i+1,0);
|
||||
}
|
||||
w(k) = ip.weight;
|
||||
}
|
||||
|
||||
if (nDim == 1)
|
||||
{
|
||||
for (int k1 = 0; k1 < nQuad1D; ++k1)
|
||||
{
|
||||
W(k1) = w(k1);
|
||||
}
|
||||
}
|
||||
else if (nDim == 2)
|
||||
{
|
||||
for (int k1 = 0; k1 < nQuad1D; ++k1)
|
||||
{
|
||||
for (int k2 = 0; k2 < nQuad1D; ++k2)
|
||||
{
|
||||
W(k1,k2) = w(k1)*w(k2);
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (nDim == 3)
|
||||
{
|
||||
for (int k1 = 0; k1 < nQuad1D; ++k1)
|
||||
{
|
||||
for (int k2 = 0; k2 < nQuad1D; ++k2)
|
||||
{
|
||||
for (int k3 = 0; k3 < nQuad1D; ++k3)
|
||||
{
|
||||
W(k1,k2,k3) = w(k1)*w(k2)*w(k3);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem::Vector eval(nDof);
|
||||
DenseMatrix deval(nDof,nDim);
|
||||
G.Init(nQuad, nDof,nDim);
|
||||
W.Init(nQuad);
|
||||
for (int k = 0; k < nQuad; ++k)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(k);
|
||||
fe->CalcDShape(ip, deval);
|
||||
for (int i = 0; i < nDof; ++i)
|
||||
{
|
||||
for (int d = 0; d < nDim; ++d)
|
||||
{
|
||||
G(k,i,d) = deval(i,d);
|
||||
}
|
||||
}
|
||||
W(k) = ip.weight;
|
||||
}
|
||||
}
|
||||
|
||||
if (onGPU)
|
||||
{
|
||||
B.MapToGPU();
|
||||
G.MapToGPU();
|
||||
W.MapToGPU();
|
||||
}
|
||||
|
||||
// Assemble in the constructor!
|
||||
BatchedPartialAssemble();
|
||||
}
|
||||
|
||||
|
||||
AcroDiffusionIntegrator::~AcroDiffusionIntegrator()
|
||||
{
|
||||
for (int i = 0; i < Btil.Size(); i++) delete Btil[i];
|
||||
}
|
||||
|
||||
|
||||
void AcroDiffusionIntegrator::ComputeBTilde()
|
||||
{
|
||||
Btil.SetSize(nDim);
|
||||
for (int d = 0; d < nDim; ++d)
|
||||
{
|
||||
Btil[d] = new acro::Tensor(nDim, nDim, nQuad1D, nDof1D, nDof1D);
|
||||
for (int m = 0; m < nDim; ++m)
|
||||
{
|
||||
for (int n = 0; n < nDim; ++n)
|
||||
{
|
||||
acro::Tensor &BGM = (m == d) ? G : B;
|
||||
acro::Tensor &BGN = (n == d) ? G : B;
|
||||
for (int k = 0; k < nQuad1D; ++k)
|
||||
{
|
||||
for (int i = 0; i < nDof1D; ++i)
|
||||
{
|
||||
for (int j = 0; j < nDof1D; ++j)
|
||||
{
|
||||
(*Btil[d])(m, n, k, i, j) = BGM(k,i)*BGN(k,j);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void AcroDiffusionIntegrator::BatchedPartialAssemble()
|
||||
{
|
||||
//Initilze the tensors
|
||||
acro::Tensor J,Jinv,Jdet,C;
|
||||
if (hasTensorBasis)
|
||||
{
|
||||
const IntegrationRule *ir1D = &IntRules.Get(Geometry::SEGMENT, ir->GetOrder());
|
||||
IntegrationPoint ip;
|
||||
if (nDim == 1)
|
||||
{
|
||||
D.Init(nElem, nDim, nDim, nQuad1D);
|
||||
J.Init(nElem, nQuad1D, nDim, nDim);
|
||||
Jinv.Init(nElem, nQuad1D, nDim, nDim);
|
||||
Jdet.Init(nElem, nQuad1D);
|
||||
C.Init(nElem, nQuad1D);
|
||||
|
||||
for (int e = 0; e < nElem; ++e)
|
||||
{
|
||||
ElementTransformation *Trans = fes->GetElementTransformation(e);
|
||||
for (int k1 = 0; k1 < nQuad1D; ++k1)
|
||||
{
|
||||
ip.x = ir1D->IntPoint(k1).x;
|
||||
ip.y = 0.0;
|
||||
ip.z = 0.0;
|
||||
Trans->SetIntPoint(&ip);
|
||||
C(e,k1) = Q->Eval(*Trans, ip);
|
||||
const DenseMatrix &JMat = Trans->Jacobian();
|
||||
for (int m = 0; m < nDim; ++m)
|
||||
{
|
||||
for (int n = 0; n < nDim; ++n)
|
||||
{
|
||||
J(e,k1,m,n) = JMat.Elem(m,n);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (nDim == 2)
|
||||
{
|
||||
D.Init(nElem, nDim, nDim, nQuad1D, nQuad1D);
|
||||
J.Init(nElem, nQuad1D, nQuad1D, nDim, nDim);
|
||||
Jinv.Init(nElem, nQuad1D, nQuad1D, nDim, nDim);
|
||||
Jdet.Init(nElem, nQuad1D, nQuad1D);
|
||||
C.Init(nElem, nQuad1D, nQuad1D);
|
||||
|
||||
for (int e = 0; e < nElem; ++e)
|
||||
{
|
||||
ElementTransformation *Trans = fes->GetElementTransformation(e);
|
||||
for (int k1 = 0; k1 < nQuad1D; ++k1)
|
||||
{
|
||||
for (int k2 = 0; k2 < nQuad1D; ++k2)
|
||||
{
|
||||
ip.x = ir1D->IntPoint(k1).x;
|
||||
ip.y = ir1D->IntPoint(k2).y;
|
||||
ip.z = 0.0;
|
||||
Trans->SetIntPoint(&ip);
|
||||
C(e,k1,k2) = Q->Eval(*Trans, ip);
|
||||
const DenseMatrix &JMat = Trans->Jacobian();
|
||||
for (int m = 0; m < nDim; ++m)
|
||||
{
|
||||
for (int n = 0; n < nDim; ++n)
|
||||
{
|
||||
J(e,k1,k2,m,n) = JMat.Elem(m,n);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (nDim == 3)
|
||||
{
|
||||
D.Init(nElem, nDim, nDim, nQuad1D, nQuad1D, nQuad1D);
|
||||
J.Init(nElem, nQuad1D, nQuad1D, nQuad1D, nDim, nDim);
|
||||
Jinv.Init(nElem, nQuad1D, nQuad1D, nQuad1D, nDim, nDim);
|
||||
Jdet.Init(nElem, nQuad1D, nQuad1D, nQuad1D);
|
||||
C.Init(nElem, nQuad1D, nQuad1D, nQuad1D);
|
||||
|
||||
for (int e = 0; e < nElem; ++e)
|
||||
{
|
||||
ElementTransformation *Trans = fes->GetElementTransformation(e);
|
||||
for (int k1 = 0; k1 < nQuad1D; ++k1)
|
||||
{
|
||||
for (int k2 = 0; k2 < nQuad1D; ++k2)
|
||||
{
|
||||
for (int k3 = 0; k3 < nQuad1D; ++k3)
|
||||
{
|
||||
ip.x = ir1D->IntPoint(k1).x;
|
||||
ip.y = ir1D->IntPoint(k2).y;
|
||||
ip.z = ir1D->IntPoint(k3).z;
|
||||
Trans->SetIntPoint(&ip);
|
||||
C(e,k1,k2,k3) = Q->Eval(*Trans, ip);
|
||||
const DenseMatrix &JMat = Trans->Jacobian();
|
||||
for (int m = 0; m < nDim; ++m)
|
||||
{
|
||||
for (int n = 0; n < nDim; ++n)
|
||||
{
|
||||
J(e,k1,k2,k3,m,n) = JMat.Elem(m,n);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
D.Init(nElem, nDim, nDim, nQuad);
|
||||
J.Init(nElem, nQuad, nDim, nDim);
|
||||
Jinv.Init(nElem, nQuad, nDim, nDim);
|
||||
Jdet.Init(nElem, nQuad);
|
||||
C.Init(nElem, nQuad);
|
||||
|
||||
for (int e = 0; e < nElem; ++e)
|
||||
{
|
||||
ElementTransformation *Trans = fes->GetElementTransformation(e);
|
||||
for (int k = 0; k < nQuad; ++k)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(k);
|
||||
Trans->SetIntPoint(&ip);
|
||||
C(e,k) = Q->Eval(*Trans, ip);
|
||||
const DenseMatrix &JMat = Trans->Jacobian();
|
||||
for (int m = 0; m < nDim; ++m)
|
||||
{
|
||||
for (int n = 0; n < nDim; ++n)
|
||||
{
|
||||
J(e,k,m,n) = JMat.Elem(m,n);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
TE.BatchMatrixInvDet(Jinv, Jdet, J);
|
||||
|
||||
if (hasTensorBasis)
|
||||
{
|
||||
if (nDim == 1)
|
||||
{
|
||||
TE("D_e_m_n_k = W_k C_e_k Jdet_e_k Jinv_e_k_m_j Jinv_e_k_n_j",
|
||||
D, W, C, Jdet, Jinv, Jinv);
|
||||
}
|
||||
else if (nDim == 2)
|
||||
{
|
||||
TE("D_e_m_n_k1_k2 = W_k1_k2 C_e_k1_k2 Jdet_e_k1_k2 Jinv_e_k1_k2_m_j Jinv_e_k1_k2_n_j",
|
||||
D, W, C, Jdet, Jinv, Jinv);
|
||||
}
|
||||
else if (nDim == 3)
|
||||
{
|
||||
TE("D_e_m_n_k1_k2_k3 = W_k1_k2_k3 C_e_k1_k2_k3 Jdet_e_k1_k2_k3 Jinv_e_k1_k2_k3_n_j Jinv_e_k1_k2_k3_m_j",
|
||||
D, W, C, Jdet, Jinv, Jinv);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
TE("D_e_m_n_k = W_k C_e_k Jdet_e_k Jinv_e_k_m_j Jinv_e_k_n_j",
|
||||
D, W, C, Jdet, Jinv, Jinv);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void AcroDiffusionIntegrator::BatchedAssembleElementMatrices(DenseTensor &elmats)
|
||||
{
|
||||
if (hasTensorBasis && Btil.Size() == 0)
|
||||
{
|
||||
ComputeBTilde();
|
||||
}
|
||||
|
||||
if (!D.IsInitialized())
|
||||
{
|
||||
BatchedPartialAssemble();
|
||||
}
|
||||
|
||||
if (!S.IsInitialized())
|
||||
{
|
||||
if (hasTensorBasis)
|
||||
{
|
||||
if (nDim == 1)
|
||||
{
|
||||
S.Init(nElem, nDof1D, nDof1D);
|
||||
}
|
||||
else if (nDim == 2)
|
||||
{
|
||||
S.Init(nElem, nDof1D, nDof1D, nDof1D, nDof1D);
|
||||
}
|
||||
else if (nDim == 3)
|
||||
{
|
||||
S.Init(nElem, nDof1D, nDof1D, nDof1D, nDof1D, nDof1D, nDof1D);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
S.Init(nElem, nDof, nDof);
|
||||
}
|
||||
if (onGPU) {S.SwitchToGPU();}
|
||||
}
|
||||
|
||||
|
||||
if (hasTensorBasis) {
|
||||
if (nDim == 1) {
|
||||
TE("S_e_i1_j1 = Btil_m_n_k1_i1_j1 D_e_m_n_k1",
|
||||
S, *Btil[0], D);
|
||||
}
|
||||
else if (nDim == 2)
|
||||
{
|
||||
TE("S_e_i1_i2_j1_j2 = Btil1_m_n_k1_i1_j1 Btil2_m_n_k2_i2_j2 D_e_m_n_k1_k2",
|
||||
S, *Btil[0], *Btil[1], D);
|
||||
}
|
||||
else if (nDim == 3)
|
||||
{
|
||||
TE("S_e_i1_i2_i3_j1_j2_j3 = Btil1_m_n_k1_i1_j1 Btil2_m_n_k2_i2_j2 Btil3_m_n_k3_i3_j3 D_e_m_n_k1_k2_k3",
|
||||
S, *Btil[0], *Btil[1], *Btil[2], D);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
TE("S_e_i_j = G_k_i_m G_k_i_n D_e_m_n_k",
|
||||
S, G, G, D);
|
||||
}
|
||||
|
||||
S.MoveFromGPU();
|
||||
for (int e = 0; e < nElem; ++e)
|
||||
{
|
||||
for (int ei = 0; ei < nDof; ++ei)
|
||||
{
|
||||
for (int ej = 0; ej < nDof; ++ej)
|
||||
{
|
||||
elmats(tDofMap[ei], tDofMap[ej], e) = S[e*nDof*nDof + ei*nDof + ej];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void AcroDiffusionIntegrator::ComputeElementMatrices(Vector &elmats)
|
||||
{
|
||||
if (hasTensorBasis && Btil.Size() == 0)
|
||||
{
|
||||
ComputeBTilde();
|
||||
}
|
||||
|
||||
if (!D.IsInitialized())
|
||||
{
|
||||
BatchedPartialAssemble();
|
||||
}
|
||||
|
||||
if (!S.IsInitialized())
|
||||
{
|
||||
if (hasTensorBasis)
|
||||
{
|
||||
if (nDim == 1)
|
||||
{
|
||||
S.Init(nElem, nDof1D, nDof1D);
|
||||
}
|
||||
else if (nDim == 2)
|
||||
{
|
||||
S.Init(nElem, nDof1D, nDof1D, nDof1D, nDof1D);
|
||||
}
|
||||
else if (nDim == 3)
|
||||
{
|
||||
S.Init(nElem, nDof1D, nDof1D, nDof1D, nDof1D, nDof1D, nDof1D);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
S.Init(nElem, nDof, nDof);
|
||||
}
|
||||
if (onGPU) {S.SwitchToGPU();}
|
||||
}
|
||||
|
||||
|
||||
if (hasTensorBasis) {
|
||||
if (nDim == 1) {
|
||||
TE("S_e_i1_j1 += Btil_m_n_k1_i1_j1 D_e_m_n_k1",
|
||||
S, *Btil[0], D);
|
||||
}
|
||||
else if (nDim == 2)
|
||||
{
|
||||
TE("S_e_i1_i2_j1_j2 += Btil1_m_n_k1_i1_j1 Btil2_m_n_k2_i2_j2 D_e_m_n_k1_k2",
|
||||
S, *Btil[0], *Btil[1], D);
|
||||
}
|
||||
else if (nDim == 3)
|
||||
{
|
||||
TE("S_e_i1_i2_i3_j1_j2_j3 += Btil1_m_n_k1_i1_j1 Btil2_m_n_k2_i2_j2 Btil3_m_n_k3_i3_j3 D_e_m_n_k1_k2_k3",
|
||||
S, *Btil[0], *Btil[1], *Btil[2], D);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
TE("S_e_i_j += G_k_i_m G_k_i_n D_e_m_n_k",
|
||||
S, G, G, D);
|
||||
}
|
||||
|
||||
S.MoveFromGPU();
|
||||
|
||||
double *edata = elmats.GetData<double>();
|
||||
for (int e = 0; e < nElem; ++e)
|
||||
{
|
||||
const int e_offset = e * nDof * nDof;
|
||||
for (int ei = 0; ei < nDof; ++ei)
|
||||
{
|
||||
const int offset = e_offset + ei * tDofMap[ei] * nDof;
|
||||
for (int ej = 0; ej < nDof; ++ej)
|
||||
{
|
||||
const int index = offset + tDofMap[ej];
|
||||
edata[index] = S[e*nDof*nDof + ei*nDof + ej];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void AcroDiffusionIntegrator::ReassembleOperator()
|
||||
{
|
||||
BatchedPartialAssemble();
|
||||
}
|
||||
|
||||
void AcroDiffusionIntegrator::PAMult(const Vector &x, Vector &y)
|
||||
{
|
||||
MFEM_ASSERT(hasTensorBasis,"AcroDiffusionIntegrator PAMult on simplices not supported");
|
||||
|
||||
if (!U.IsInitialized())
|
||||
{
|
||||
// NOTE: x and y are already sized for the fespace in the constructor
|
||||
double *Xptr = const_cast<double*>(x.GetData<double>());
|
||||
double *Yptr = y.GetData<double>();
|
||||
if (nDim == 1) {
|
||||
X.Init(nElem,nDof1D,Xptr,Xptr,onGPU);
|
||||
Y.Init(nElem,nDof1D,Yptr,Yptr,onGPU);
|
||||
U.Init(nDim, nElem, nQuad1D);
|
||||
Z.Init(nDim, nElem, nQuad1D);
|
||||
if (onGPU)
|
||||
{
|
||||
U.SwitchToGPU();
|
||||
Z.SwitchToGPU();
|
||||
}
|
||||
}
|
||||
else if (nDim == 2)
|
||||
{
|
||||
X.Init(nElem,nDof1D,nDof1D,Xptr,Xptr,onGPU);
|
||||
Y.Init(nElem,nDof1D,nDof1D,Yptr,Yptr,onGPU);
|
||||
U.Init(nDim, nElem, nQuad1D, nQuad1D);
|
||||
Z.Init(nDim, nElem, nQuad1D, nQuad1D);
|
||||
T1.Init(nElem,nDof1D,nQuad1D);
|
||||
if (onGPU)
|
||||
{
|
||||
U.SwitchToGPU();
|
||||
Z.SwitchToGPU();
|
||||
T1.SwitchToGPU();
|
||||
}
|
||||
}
|
||||
else if (nDim == 3)
|
||||
{
|
||||
X.Init(nElem,nDof1D,nDof1D,nDof1D,Xptr,Xptr,onGPU);
|
||||
Y.Init(nElem,nDof1D,nDof1D,nDof1D,Yptr,Yptr,onGPU);
|
||||
U.Init(nDim, nElem, nQuad1D, nQuad1D, nQuad1D);
|
||||
Z.Init(nDim, nElem, nQuad1D, nQuad1D, nQuad1D);
|
||||
T1.Init(nElem, nDof1D, nQuad1D, nQuad1D);
|
||||
T2.Init(nElem, nDof1D, nDof1D, nQuad1D);
|
||||
if (onGPU)
|
||||
{
|
||||
U.SwitchToGPU();
|
||||
Z.SwitchToGPU();
|
||||
T1.SwitchToGPU();
|
||||
T2.SwitchToGPU();
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
// NOTE: x and y are already sized for the fespace in the constructor
|
||||
double *Xptr = const_cast<double*>(x.GetData<double>());
|
||||
double *Yptr = y.GetData<double>();
|
||||
X.Retarget(Xptr,Xptr);
|
||||
Y.Retarget(Yptr,Yptr);
|
||||
}
|
||||
|
||||
acro::SliceTensor U1,U2,U3,Z1,Z2,Z3;
|
||||
if (nDim == 1)
|
||||
{
|
||||
TE("U_n_e_k1 = G_k1_i1 X_e_i1", U, G, X);
|
||||
TE("Z_m_e_k1 = D_e_m_n_k1 U_n_e_k1", Z, D, U);
|
||||
TE("Y_e_i1 = G_k1_i1 Z_m_e_k1", Y, G, Z);
|
||||
}
|
||||
else if (nDim == 2)
|
||||
{
|
||||
U1.SliceInit(U, 0); U2.SliceInit(U, 1);
|
||||
Z1.SliceInit(Z, 0); Z2.SliceInit(Z, 1);
|
||||
|
||||
//U1_e_k1_k2 = G_k1_i1 B_k2_i2 X_e_i1_i2
|
||||
TE("BX_e_i1_k2 = B_k2_i2 X_e_i2_i1", T1, B, X);
|
||||
TE("U1_e_k1_k2 = G_k1_i1 BX_e_i1_k2", U1, G, T1);
|
||||
|
||||
//U2_e_k1_k2 = B_k1_i1 G_k2_i2 X_e_i1_i2
|
||||
TE("GX_e_i1_k2 = G_k2_i2 X_e_i2_i1", T1, G, X);
|
||||
TE("U2_e_k1_k2 = B_k1_i1 GX_e_i1_k2", U2, B, T1);
|
||||
|
||||
TE("Z_m_e_k1_k2 = D_e_m_n_k1_k2 U_n_e_k1_k2", Z, D, U);
|
||||
|
||||
//Y_e_i1_i2 = G_k1_i1 B_k2_i2 Z1_e_k1_k2
|
||||
TE("BZ1_e_i2_k1 = B_k2_i2 Z1_e_k1_k2", T1, B, Z1);
|
||||
TE("Y_e_i2_i1 = G_k1_i1 BZ1_e_i2_k1", Y, G, T1);
|
||||
|
||||
//Y_e_i1_i2 += B_k1_i1 G_k2_i2 Z2_e_k1_k2
|
||||
TE("GZ2_e_i2_k1 = G_k2_i2 Z2_e_k1_k2", T1, G, Z2);
|
||||
TE("Y_e_i2_i1 += B_k1_i1 GZ2_e_i2_k1", Y, B, T1);
|
||||
}
|
||||
else if (nDim == 3)
|
||||
{
|
||||
U1.SliceInit(U, 0); U2.SliceInit(U, 1); U3.SliceInit(U, 2);
|
||||
Z1.SliceInit(Z, 0); Z2.SliceInit(Z, 1); Z3.SliceInit(Z, 2);
|
||||
|
||||
TE.BeginMultiKernelLaunch();
|
||||
//U1_e_k1_k2_k3 = G_k1_i1 B_k2_i2 B_k3_i3 X_e_i1_i2_i3
|
||||
TE("T2_e_i1_i2_k3 = B_k3_i3 X_e_i1_i2_i3", T2, B, X);
|
||||
TE("T1_e_i1_k2_k3 = B_k2_i2 T2_e_i1_i2_k3", T1, B, T2);
|
||||
TE("U1_e_k1_k2_k3 = G_k1_i1 T1_e_i1_k2_k3", U1, G, T1);
|
||||
|
||||
//U2_e_k1_k2_k3 = B_k1_i1 G_k2_i2 B_k3_i3 X_e_i1_i2_i3
|
||||
TE("T1_e_i1_k2_k3 = G_k2_i2 T2_e_i1_i2_k3", T1, G, T2);
|
||||
TE("U2_e_k1_k2_k3 = B_k1_i1 T1_e_i1_k2_k3", U2, B, T1);
|
||||
|
||||
//U3_e_k1_k2_k3 = B_k1_i1 B_k2_i2 G_k3_i3 X_e_i1_i2_i3
|
||||
TE("T2_e_i1_i2_k3 = G_k3_i3 X_e_i1_i2_i3", T2, G, X);
|
||||
TE("T1_e_i1_k2_k3 = B_k2_i2 T2_e_i1_i2_k3", T1, B, T2);
|
||||
TE("U3_e_k1_k2_k3 = B_k1_i1 T1_e_i1_k2_k3", U3, B, T1);
|
||||
|
||||
TE("Z_m_e_k1_k2_k3 = D_e_m_n_k1_k2_k3 U_n_e_k1_k2_k3", Z, D, U);
|
||||
|
||||
//Y_e_i1_i2_i3 = G_k1_i1 B_k2_i2 B_k3_i3 Z1_e_k1_k2_k3
|
||||
TE("T1_e_i3_k1_k2 = B_k3_i3 Z1_e_k1_k2_k3", T1, B, Z1);
|
||||
TE("T2_e_i2_i3_k1 = B_k2_i2 T1_e_i3_k1_k2", T2, B, T1);
|
||||
TE("Y_e_i1_i2_i3 = G_k1_i1 T2_e_i2_i3_k1", Y, G, T2);
|
||||
|
||||
//Y_e_i1_i2_i3 += B_k1_i1 G_k2_i2 B_k3_i3 Z2_e_k1_k2_k3
|
||||
TE("T1_e_i3_k1_k2 = B_k3_i3 Z2_e_k1_k2_k3", T1, B, Z2);
|
||||
TE("T2_e_i2_i3_k1 = G_k2_i2 T1_e_i3_k1_k2", T2, G, T1);
|
||||
TE("Y_e_i1_i2_i3 += B_k1_i1 T2_e_i2_i3_k1", Y, B, T2);
|
||||
|
||||
//Y_e_i1_i2_i3 += B_k1_i1 B_k2_i2 G_k3_i3 Z3_e_k1_k2_k3
|
||||
TE("T1_e_i3_k1_k2 = G_k3_i3 Z3_e_k1_k2_k3", T1, G, Z3);
|
||||
TE("T2_e_i2_i3_k1 = B_k2_i2 T1_e_i3_k1_k2", T2, B, T1);
|
||||
TE("Y_e_i1_i2_i3 += B_k1_i1 T2_e_i2_i3_k1", Y, B, T2);
|
||||
TE.EndMultiKernelLaunch();
|
||||
}
|
||||
}
|
||||
|
||||
void AcroDiffusionIntegrator::MultAdd(const Vector &x, Vector &y) const
|
||||
{
|
||||
const_cast<AcroDiffusionIntegrator*>(this)->PAMult(x, y);
|
||||
}
|
||||
|
||||
void AcroDiffusionIntegrator::MultTransposeAdd(const Vector &x, Vector &y) const
|
||||
{
|
||||
mfem_error("Not supported");
|
||||
}
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,95 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OMP_ADIFFUSIONINTEG_HPP
|
||||
#define MFEM_BACKENDS_OMP_ADIFFUSIONINTEG_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && \
|
||||
defined(MFEM_USE_OMP) && \
|
||||
defined(MFEM_USE_ACROTENSOR)
|
||||
|
||||
#include "../../fem/bilininteg.hpp"
|
||||
#include "../../fem/fem.hpp"
|
||||
#include "vector.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "AcroTensor.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
class PAIntegrator : public TensorBilinearFormIntegrator
|
||||
{
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
FiniteElementSpace *ofes;
|
||||
mfem::FiniteElementSpace *fes;
|
||||
const FiniteElement *fe;
|
||||
const TensorBasisElement *tfe;
|
||||
const IntegrationRule *ir;
|
||||
mfem::Array<int> tDofMap;
|
||||
int GeomType;
|
||||
int FEOrder;
|
||||
bool onGPU;
|
||||
bool hasTensorBasis;
|
||||
int nDim;
|
||||
int nElem;
|
||||
int nDof;
|
||||
int nQuad;
|
||||
|
||||
public:
|
||||
PAIntegrator(Coefficient &q, FiniteElementSpace &f);
|
||||
virtual ~PAIntegrator();
|
||||
};
|
||||
|
||||
class AcroDiffusionIntegrator : public PAIntegrator
|
||||
{
|
||||
private:
|
||||
acro::TensorEngine TE;
|
||||
int nDof1D;
|
||||
int nQuad1D;
|
||||
|
||||
acro::Tensor B, G; //Basis and dbasis evaluated on the quad points
|
||||
acro::Tensor W; //Integration weights
|
||||
mfem::Array<acro::Tensor*> Btil; //Btilde used to compute stiffness matrix
|
||||
acro::Tensor D; //Product of integration weight, physical consts, and element shape info
|
||||
acro::Tensor S; //The assembled local stiffness matrices
|
||||
acro::Tensor U, Z, T1, T2; //Intermediate computations for tensor product partial assembly
|
||||
acro::Tensor X, Y;
|
||||
|
||||
void ComputeBTilde();
|
||||
|
||||
public:
|
||||
AcroDiffusionIntegrator(BilinearFormIntegrator *integ);
|
||||
AcroDiffusionIntegrator(Coefficient &q, FiniteElementSpace &f);
|
||||
virtual ~AcroDiffusionIntegrator();
|
||||
|
||||
void BatchedPartialAssemble();
|
||||
void BatchedAssembleElementMatrices(DenseTensor &elmats);
|
||||
void ComputeElementMatrices(Vector &elmats);
|
||||
void PAMult(const Vector &x, Vector &y);
|
||||
virtual void MultTransposeAdd(const Vector &x, Vector &y) const;
|
||||
virtual void MultAdd(const Vector &x, Vector &y) const;
|
||||
virtual void ReassembleOperator();
|
||||
};
|
||||
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,128 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include <cstring>
|
||||
#include "array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
PArray *Array::DoClone(bool copy_data, void **buffer,
|
||||
std::size_t item_size) const
|
||||
{
|
||||
Array *new_array = new Array(OmpLayout(), item_size);
|
||||
if (copy_data)
|
||||
{
|
||||
if (!ComputeOnDevice())
|
||||
std::memcpy(new_array->GetData<void>(), data, bytes);
|
||||
else
|
||||
{
|
||||
char *new_data = new_array->GetData<char>();
|
||||
const bool use_target = ComputeOnDevice();
|
||||
const bool use_parallel = Size() > 1000;
|
||||
#pragma omp target teams distribute parallel for \
|
||||
if (target: use_target) if (parallel: use_parallel) \
|
||||
is_device_ptr(new_data)
|
||||
for (std::size_t i = 0; i < bytes; i++) new_data[i] = data[i];
|
||||
}
|
||||
}
|
||||
if (buffer)
|
||||
{
|
||||
*buffer = new_array->GetData<void>();
|
||||
}
|
||||
return new_array;
|
||||
}
|
||||
|
||||
int Array::DoResize(PLayout &new_layout, void **buffer,
|
||||
std::size_t item_size)
|
||||
{
|
||||
MFEM_ASSERT(dynamic_cast<Layout *>(&new_layout) != NULL,
|
||||
"new_layout is not an OMP Layout");
|
||||
Layout *lt = static_cast<Layout *>(&new_layout);
|
||||
layout.Reset(lt); // Reset() checks if the pointer is the same
|
||||
int err = ResizeData(lt, item_size);
|
||||
if (!err && buffer)
|
||||
{
|
||||
*buffer = GetData<void>();
|
||||
}
|
||||
return err;
|
||||
}
|
||||
|
||||
void *Array::DoPullData(void *buffer, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
if (!IsUnifiedMemory() && ComputeOnDevice() && (buffer != NULL))
|
||||
{
|
||||
#pragma omp target update from(data)
|
||||
std::memcpy(buffer, data, bytes);
|
||||
}
|
||||
else
|
||||
{
|
||||
buffer = data;
|
||||
}
|
||||
|
||||
return buffer;
|
||||
}
|
||||
|
||||
void Array::DoFill(const void *value_ptr, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
switch (item_size)
|
||||
{
|
||||
case sizeof(int):
|
||||
OmpFill((const int *)value_ptr);
|
||||
break;
|
||||
case sizeof(double):
|
||||
OmpFill((const double *)value_ptr);
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("item_size = " << item_size << " is not supported");
|
||||
}
|
||||
}
|
||||
|
||||
void Array::DoPushData(const void *src_buffer, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
std::memcpy(data, (char *) src_buffer, bytes);
|
||||
|
||||
if ((!IsUnifiedMemory() && ComputeOnDevice()) && (data != src_buffer))
|
||||
{
|
||||
#pragma omp target update to(data)
|
||||
}
|
||||
}
|
||||
|
||||
void Array::DoAssign(const PArray &src, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
// Note: static_cast can not be used here since PArray is a virtual base
|
||||
// class.
|
||||
const Array *source = dynamic_cast<const Array *>(&src);
|
||||
MFEM_ASSERT(source != NULL, "invalid source Array type");
|
||||
MFEM_ASSERT(Size() == source->Size(), "");
|
||||
// All arrays from this engine are of the same type, so we can simply check *this and assume the same is used in src.
|
||||
DoPushData(source->GetData<void>(), item_size);
|
||||
}
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
@@ -0,0 +1,143 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OMP_ARRAY_HPP
|
||||
#define MFEM_BACKENDS_OMP_ARRAY_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "layout.hpp"
|
||||
#include "../base/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
class Array : public virtual mfem::PArray
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// DLayout layout;
|
||||
|
||||
bool own_data;
|
||||
std::size_t bytes;
|
||||
char *data;
|
||||
|
||||
//
|
||||
// Virtual interface
|
||||
//
|
||||
|
||||
virtual void *DoGetData() const { return (void *) data; }
|
||||
|
||||
virtual PArray *DoClone(bool copy_data, void **buffer,
|
||||
std::size_t item_size) const;
|
||||
|
||||
virtual int DoResize(PLayout &new_layout, void **buffer,
|
||||
std::size_t item_size);
|
||||
|
||||
virtual void *DoPullData(void *buffer, std::size_t item_size);
|
||||
|
||||
virtual void DoFill(const void *value_ptr, std::size_t item_size);
|
||||
|
||||
virtual void DoPushData(const void *src_buffer, std::size_t item_size);
|
||||
|
||||
virtual void DoAssign(const PArray &src, std::size_t item_size);
|
||||
|
||||
//
|
||||
// Auxiliary methods
|
||||
//
|
||||
|
||||
inline int ResizeData(const Layout *lt, std::size_t item_size);
|
||||
|
||||
inline bool IsUnifiedMemory() const { return OmpLayout().OmpEngine().UnifiedMemory(); }
|
||||
|
||||
template <typename T>
|
||||
void OmpFill(const T *pval)
|
||||
{
|
||||
T *ptr = (T*) data;
|
||||
T val = *pval;
|
||||
const bool use_target = ComputeOnDevice();
|
||||
const bool use_parallel = (use_target || layout->Size() > 1000);
|
||||
const std::size_t size = layout->Size();
|
||||
#pragma omp target teams distribute parallel for \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel) map (to: ptr, val)
|
||||
for (int i = 0; i < size; i++) ptr[i] = val;
|
||||
}
|
||||
|
||||
public:
|
||||
Array(Layout <, std::size_t item_size)
|
||||
: PArray(lt),
|
||||
own_data(true),
|
||||
bytes(lt.Size() * item_size),
|
||||
data(static_cast<char *>(lt.Alloc(bytes)))
|
||||
{
|
||||
#pragma omp target enter data map(alloc:data[:bytes]) if (!IsUnifiedMemory() && ComputeOnDevice())
|
||||
}
|
||||
|
||||
Array(const Array &array)
|
||||
: PArray(array.GetLayout()),
|
||||
own_data(false),
|
||||
bytes(array.bytes),
|
||||
data(array.data) { }
|
||||
|
||||
inline bool ComputeOnDevice() const { return (OmpLayout().OmpEngine().ExecTarget() == Device); }
|
||||
|
||||
virtual ~Array()
|
||||
{
|
||||
#pragma omp target exit data map(delete:data[:bytes]) if (!IsUnifiedMemory() && ComputeOnDevice())
|
||||
if (own_data) layout->As<Layout>().Dealloc(data);
|
||||
}
|
||||
|
||||
inline void MakeRef(Array &master);
|
||||
|
||||
Layout &OmpLayout() const
|
||||
{ return *static_cast<Layout *>(layout.Get()); }
|
||||
};
|
||||
|
||||
|
||||
//
|
||||
// Inline methods
|
||||
//
|
||||
|
||||
inline int Array::ResizeData(const Layout *lt, std::size_t item_size)
|
||||
{
|
||||
const std::size_t new_bytes = lt->Size() * item_size;
|
||||
if (bytes < new_bytes)
|
||||
{
|
||||
#pragma omp target exit data map(delete:data)
|
||||
OmpLayout().Dealloc(data);
|
||||
data = static_cast<char *>(OmpLayout().Alloc(new_bytes));
|
||||
MFEM_VERIFY(data != NULL, "");
|
||||
// If memory allocation fails - an exception is thrown.
|
||||
#pragma omp target enter data map(alloc:data[:new_bytes])
|
||||
}
|
||||
return 0;
|
||||
}
|
||||
|
||||
inline void Array::MakeRef(Array &master)
|
||||
{
|
||||
layout = master.layout;
|
||||
data = master.data;
|
||||
}
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#endif // MFEM_BACKENDS_OMP_ARRAY_HPP
|
||||
@@ -0,0 +1,46 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
bool Backend::Supports(const std::string &engine_spec) const
|
||||
{
|
||||
return true;
|
||||
}
|
||||
|
||||
mfem::Engine *Create(const std::string &engine_spec)
|
||||
{
|
||||
return new Engine(engine_spec);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
mfem::Engine *Create(MPI_Comm comm, const std::string &engine_spec)
|
||||
{
|
||||
return new Engine(comm, engine_spec);
|
||||
}
|
||||
#endif
|
||||
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
@@ -0,0 +1,48 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OMP_BACKEND_HPP
|
||||
#define MFEM_BACKENDS_OMP_BACKEND_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
// Only the Backend and Engine classes should be exposed through "backend.hpp"
|
||||
#include "../base/backend.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
class Backend : public mfem::Backend
|
||||
{
|
||||
public:
|
||||
virtual ~Backend();
|
||||
|
||||
virtual bool Supports(const std::string &engine_spec) const;
|
||||
|
||||
virtual mfem::Engine *Create(const std::string &engine_spec);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
virtual mfem::Engine *Create(MPI_Comm comm, const std::string &engine_spec);
|
||||
#endif
|
||||
};
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#endif // MFEM_BACKENDS_OMP_BACKEND_HPP
|
||||
@@ -0,0 +1,399 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "adiffusioninteg.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
BilinearForm::~BilinearForm()
|
||||
{
|
||||
// Make sure all integrators free their data
|
||||
for (int i = 0; i < tbfi.Size(); i++) delete tbfi[i];
|
||||
|
||||
delete element_matrices;
|
||||
}
|
||||
|
||||
void BilinearForm::TransferIntegrators()
|
||||
{
|
||||
mfem::Array<mfem::BilinearFormIntegrator*> &dbfi = *bform->GetDBFI();
|
||||
for (int i = 0; i < dbfi.Size(); i++)
|
||||
{
|
||||
std::string integ_name(dbfi[i]->Name());
|
||||
Coefficient *scal_coeff = dbfi[i]->GetScalarCoefficient();
|
||||
// ConstantCoefficient *const_coeff =
|
||||
// dynamic_cast<ConstantCoefficient*>(scal_coeff);
|
||||
// // TODO: other types of coefficients ...
|
||||
// double val = const_coeff ? const_coeff->constant : 1.0;
|
||||
|
||||
if (integ_name == "(undefined)")
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator does not define Name()");
|
||||
}
|
||||
else if (integ_name == "diffusion")
|
||||
{
|
||||
switch (OmpEngine().IntegType())
|
||||
{
|
||||
case Acrotensor:
|
||||
tbfi.Append(new AcroDiffusionIntegrator(*scal_coeff, bform->FESpace()->Get_PFESpace()->As<FiniteElementSpace>()));
|
||||
break;
|
||||
default:
|
||||
mfem_error("integrator is not supported for any MultType");
|
||||
break;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator [Name() = " << integ_name
|
||||
<< "] is not supported");
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::InitRHS(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::Vector &mfem_x, mfem::Vector &mfem_b,
|
||||
mfem::OperatorHandle &A,
|
||||
mfem::Vector &mfem_X, mfem::Vector &mfem_B,
|
||||
int copy_interior) const
|
||||
{
|
||||
const mfem::Operator *P = GetProlongation();
|
||||
const mfem::Operator *R = GetRestriction();
|
||||
|
||||
if (P)
|
||||
{
|
||||
// Variational restriction with P
|
||||
mfem_B.Resize(P->InLayout());
|
||||
P->MultTranspose(mfem_b, mfem_B);
|
||||
mfem_X.Resize(R->OutLayout());
|
||||
R->Mult(mfem_x, mfem_X);
|
||||
}
|
||||
else
|
||||
{
|
||||
// rap, X and B point to the same data as this, x and b
|
||||
mfem_X.MakeRef(mfem_x);
|
||||
mfem_B.MakeRef(mfem_b);
|
||||
}
|
||||
|
||||
if (A.Type() != mfem::Operator::ANY_TYPE)
|
||||
{
|
||||
A.EliminateBC(mat_e, ess_tdof_list, mfem_X, mfem_B);
|
||||
}
|
||||
|
||||
if (!copy_interior && ess_tdof_list.Size() > 0)
|
||||
{
|
||||
Vector &X = mfem_X.Get_PVector()->As<Vector>();
|
||||
const Array &constraint_list = ess_tdof_list.Get_PArray()->As<Array>();
|
||||
|
||||
double *X_data = X.GetData<double>();
|
||||
const int* constraint_data = constraint_list.GetData<int>();
|
||||
|
||||
Vector subvec(constraint_list.OmpLayout());
|
||||
double *subvec_data = subvec.GetData<double>();
|
||||
|
||||
const std::size_t num_constraint = constraint_list.Size();
|
||||
const bool use_target = constraint_list.ComputeOnDevice();
|
||||
const bool use_parallel = (use_target || num_constraint > 1000);
|
||||
|
||||
// This operation is a general version of mfem::Vector::SetSubVectorComplement()
|
||||
// {
|
||||
#pragma omp target teams distribute parallel for \
|
||||
map(to: subvec_data, constraint_data, X_data) \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel)
|
||||
for (std::size_t i = 0; i < num_constraint; i++) subvec_data[i] = X_data[constraint_data[i]];
|
||||
|
||||
X.Fill(0.0);
|
||||
|
||||
#pragma omp target teams distribute parallel for \
|
||||
map(to: X_data, constraint_data, subvec_data) \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel)
|
||||
for (std::size_t i = 0; i < num_constraint; i++) X_data[constraint_data[i]] = subvec_data[i];
|
||||
// }
|
||||
}
|
||||
|
||||
if (A.Type() == mfem::Operator::ANY_TYPE)
|
||||
{
|
||||
ConstrainedOperator *A_constrained = static_cast<ConstrainedOperator*>(A.Ptr());
|
||||
A_constrained->EliminateRHS(mfem_X, mfem_B);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
bool BilinearForm::Assemble()
|
||||
{
|
||||
if (!has_assembled)
|
||||
{
|
||||
TransferIntegrators();
|
||||
has_assembled = true;
|
||||
}
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
void BilinearForm::ComputeElementMatrices()
|
||||
{
|
||||
// Only called if performing full assembly
|
||||
const int nelements = trial_fes->GetFESpace()->GetNE();
|
||||
const int trial_ndofs = trial_fes->GetFESpace()->GetFE(0)->GetDof() * trial_fes->GetFESpace()->GetVDim();
|
||||
const int test_ndofs = test_fes->GetFESpace()->GetFE(0)->GetDof() * test_fes->GetFESpace()->GetVDim();
|
||||
const std::size_t length = nelements * trial_ndofs * test_ndofs;
|
||||
|
||||
if (!element_matrices) element_matrices = new mfem::Vector(*(new Layout(OmpEngine(), length)));
|
||||
else element_matrices->Push();
|
||||
|
||||
element_matrices->Fill(0.0);
|
||||
Vector &elmats = element_matrices->Get_PVector()->As<Vector>();
|
||||
|
||||
tbfi[0]->ComputeElementMatrices(elmats);
|
||||
|
||||
if (tbfi.Size() > 1)
|
||||
{
|
||||
for (int k = 1; k < tbfi.Size(); k++)
|
||||
{
|
||||
tbfi[k]->ComputeElementMatrices(elmats);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::FormSystemMatrix(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::OperatorHandle &A)
|
||||
{
|
||||
if (A.Type() == mfem::Operator::ANY_TYPE)
|
||||
{
|
||||
// FIXME: Support different test and trial spaces (MixedBilinearForm)
|
||||
const mfem::Operator *P = GetProlongation();
|
||||
|
||||
mfem::Operator *rap = this;
|
||||
if (P != NULL) rap = new mfem::RAPOperator(*P, *this, *P);
|
||||
|
||||
A.Reset(new ConstrainedOperator(rap, ess_tdof_list, (rap != this)));
|
||||
|
||||
return;
|
||||
}
|
||||
else
|
||||
{
|
||||
// ASSUMPTION: some sort of sparse matrix
|
||||
// Compute the local matrices (stored in bform->element_matrices
|
||||
ComputeElementMatrices();
|
||||
bform->AllocateMatrix();
|
||||
mfem::SparseMatrix &mat = bform->SpMat();
|
||||
|
||||
element_matrices->Pull();
|
||||
double *data = element_matrices->GetData();
|
||||
|
||||
const bool skip_zeros = true;
|
||||
mfem::Array<int> tr_vdofs, te_vdofs;
|
||||
for (int i = 0; i < trial_fes->GetFESpace()->GetNE(); i++)
|
||||
{
|
||||
trial_fes->GetFESpace()->GetElementVDofs(i, tr_vdofs);
|
||||
test_fes->GetFESpace()->GetElementVDofs(i, te_vdofs);
|
||||
const mfem::DenseMatrix elmat(data, te_vdofs.Size(), tr_vdofs.Size());
|
||||
mat.AddSubMatrix(te_vdofs, tr_vdofs, elmat, skip_zeros);
|
||||
data += tr_vdofs.Size() * te_vdofs.Size();
|
||||
}
|
||||
}
|
||||
|
||||
if (A.Type() == mfem::Operator::MFEM_SPARSEMAT)
|
||||
{
|
||||
// This works because the FormSystemMatrix call with an explicit
|
||||
// SparseMatrix doesnt call the backend version... This might
|
||||
// change in the future.
|
||||
bform->FormSystemMatrix(ess_tdof_list, static_cast<mfem::SparseMatrix&>(*A.Ptr()));
|
||||
}
|
||||
#ifdef MFEM_USE_MPI
|
||||
else if (A.Type() == mfem::Operator::Hypre_ParCSR)
|
||||
{
|
||||
mfem::SparseMatrix &mat = bform->SpMat();
|
||||
mfem::ParBilinearForm *pbform = dynamic_cast<mfem::ParBilinearForm*>(bform);
|
||||
|
||||
const bool skip_zeros = false;
|
||||
mat.Finalize(skip_zeros);
|
||||
|
||||
// -------- FOR SOME VERY AGGREVATING REASON THIS DOESN'T WORK ---------
|
||||
// mfem::ParFiniteElementSpace *pfes = pbform->ParFESpace();
|
||||
// OperatorHandle dA(Operator::Hypre_ParCSR);
|
||||
// // construct a parallel block-diagonal matrix 'A' based on 'a'
|
||||
// dA.MakeSquareBlockDiag(pfes->GetComm(), *engine->MakeLayout(pfes->GlobalTrueVSize()),
|
||||
// pfes->GetDofOffsets(), &mat);
|
||||
// OperatorHandle Ph(pfes->Dof_TrueDof_Matrix());
|
||||
// A.MakePtAP(dA, Ph);
|
||||
// A.SetOperatorOwner(false);
|
||||
// -------- BUT THIS DOES ---------
|
||||
pbform->ParallelAssemble(A, &mat);
|
||||
A.SetOperatorOwner(false);
|
||||
// ---------------------
|
||||
mat.Clear();
|
||||
mat_e.Clear();
|
||||
std::cout << "operator size (FormSystemMatrix): " << A.Ptr()->InLayout()->Size() << " " << A.Ptr()->OutLayout()->Size() << std::endl;
|
||||
|
||||
mat_e.EliminateRowsCols(A, ess_tdof_list);
|
||||
}
|
||||
#endif
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Operator::Type is not supported, type = " << A.Type());
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::FormLinearSystem(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::OperatorHandle &A, mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior)
|
||||
{
|
||||
FormSystemMatrix(ess_tdof_list, A);
|
||||
std::cout << "operator size (FormLinearSystem 1): " << A.Ptr()->InLayout()->Size() << " " << A.Ptr()->OutLayout()->Size() << std::endl;
|
||||
InitRHS(ess_tdof_list, x, b, A, X, B, copy_interior);
|
||||
}
|
||||
|
||||
void BilinearForm::RecoverFEMSolution(const mfem::Vector &X, const mfem::Vector &b,
|
||||
mfem::Vector &x)
|
||||
{
|
||||
const mfem::Operator *P = GetProlongation();
|
||||
if (P)
|
||||
{
|
||||
// Apply conforming prolongation
|
||||
x.Resize(P->OutLayout());
|
||||
P->Mult(X, x);
|
||||
}
|
||||
// Otherwise X and x point to the same data
|
||||
}
|
||||
|
||||
void BilinearForm::Mult(const mfem::Vector &x, mfem::Vector &y) const
|
||||
{
|
||||
trial_fes->ToEVector(x.Get_PVector()->As<Vector>(), x_local);
|
||||
|
||||
y_local.Fill<double>(0.0);
|
||||
for (int i = 0; i < tbfi.Size(); i++) tbfi[i]->MultAdd(x_local, y_local);
|
||||
|
||||
test_fes->ToLVector(y_local, y.Get_PVector()->As<Vector>());
|
||||
}
|
||||
|
||||
void BilinearForm::MultTranspose(const mfem::Vector &x, mfem::Vector &y) const
|
||||
{ mfem_error("mfem::omp::BilinearForm::MultTranspose() is not supported!"); }
|
||||
|
||||
|
||||
ConstrainedOperator::ConstrainedOperator(mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraint_list_,
|
||||
bool own_A_)
|
||||
: Operator(A_->InLayout()->As<Layout>()),
|
||||
A(A_),
|
||||
own_A(own_A_),
|
||||
// FIXME: @dudouit1 has a general fix for this
|
||||
constraint_list(constraint_list_.Get_PArray()->As<Array>()),
|
||||
z(OutLayout()->As<Layout>()),
|
||||
w(OutLayout()->As<Layout>()),
|
||||
mfem_z((z.DontDelete(), z)),
|
||||
mfem_w((w.DontDelete(), w)) { }
|
||||
|
||||
void ConstrainedOperator::EliminateRHS(const mfem::Vector &mfem_x, mfem::Vector &mfem_b) const
|
||||
{
|
||||
w.Fill<double>(0.0);
|
||||
|
||||
const Vector &x = mfem_x.Get_PVector()->As<Vector>();
|
||||
Vector &b = mfem_b.Get_PVector()->As<Vector>();
|
||||
|
||||
const double *x_data = x.GetData<double>();
|
||||
double *b_data = b.GetData<double>();
|
||||
double *w_data = w.GetData<double>();
|
||||
const int* constraint_data = constraint_list.GetData<int>();
|
||||
|
||||
const std::size_t num_constraint = constraint_list.Size();
|
||||
const bool use_target = constraint_list.ComputeOnDevice();
|
||||
const bool use_parallel = (use_target || num_constraint > 1000);
|
||||
|
||||
if (num_constraint > 0)
|
||||
{
|
||||
#pragma omp target teams distribute parallel for \
|
||||
map(to: w_data, constraint_data, x_data) \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel)
|
||||
for (std::size_t i = 0; i < num_constraint; i++)
|
||||
w_data[constraint_data[i]] = x_data[constraint_data[i]];
|
||||
}
|
||||
|
||||
A->Mult(mfem_w, mfem_z);
|
||||
|
||||
b.Axpby<double>(1.0, b, -1.0, z);
|
||||
|
||||
if (num_constraint > 0)
|
||||
{
|
||||
#pragma omp target teams distribute parallel for \
|
||||
map(to: b_data, constraint_data, x_data) \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel)
|
||||
for (std::size_t i = 0; i < num_constraint; i++)
|
||||
b_data[constraint_data[i]] = x_data[constraint_data[i]];
|
||||
}
|
||||
}
|
||||
|
||||
void ConstrainedOperator::Mult(const mfem::Vector &mfem_x, mfem::Vector &mfem_y) const
|
||||
{
|
||||
if (constraint_list.Size() == 0)
|
||||
{
|
||||
A->Mult(mfem_x, mfem_y);
|
||||
return;
|
||||
}
|
||||
|
||||
const Vector &x = mfem_x.Get_PVector()->As<Vector>();
|
||||
Vector &y = mfem_y.Get_PVector()->As<Vector>();
|
||||
|
||||
const double *x_data = x.GetData<double>();
|
||||
double *y_data = y.GetData<double>();
|
||||
double *z_data = z.GetData<double>();
|
||||
const int* constraint_data = constraint_list.GetData<int>();
|
||||
|
||||
const std::size_t num_constraint = constraint_list.Size();
|
||||
const bool use_target = constraint_list.ComputeOnDevice();
|
||||
const bool use_parallel = (use_target || num_constraint > 1000);
|
||||
|
||||
z.Assign<double>(x); // z = x
|
||||
|
||||
// z[constraint_list] = 0.0
|
||||
#pragma omp target teams distribute parallel for \
|
||||
map(to: z_data, constraint_data) \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel)
|
||||
for (std::size_t i = 0; i < num_constraint; i++)
|
||||
z_data[constraint_data[i]] = 0.0;
|
||||
|
||||
// y = A * z
|
||||
A->Mult(mfem_z, mfem_y);
|
||||
|
||||
// y[constraint_list] = x[constraint_list]
|
||||
#pragma omp target teams distribute parallel for \
|
||||
map(to: y_data, constraint_data, x_data) \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel)
|
||||
for (std::size_t i = 0; i < num_constraint; i++)
|
||||
y_data[constraint_data[i]] = x_data[constraint_data[i]];
|
||||
}
|
||||
|
||||
// Destructor: destroys the unconstrained Operator @a A if @a own_A is true.
|
||||
ConstrainedOperator::~ConstrainedOperator()
|
||||
{
|
||||
if (own_A) delete A;
|
||||
}
|
||||
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
@@ -0,0 +1,176 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OMP_BILINEARFORM_HPP
|
||||
#define MFEM_BACKENDS_OMP_BILINEARFORM_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "fespace.hpp"
|
||||
#include "array.hpp"
|
||||
#include "vector.hpp"
|
||||
#include "../../fem/bilininteg.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
class TensorBilinearFormIntegrator
|
||||
{
|
||||
public:
|
||||
virtual ~TensorBilinearFormIntegrator() { }
|
||||
|
||||
virtual void ReassembleOperator() = 0;
|
||||
|
||||
virtual void ComputeElementMatrices(Vector &element_matrices)
|
||||
{ mfem_error("TensorBilinaerFormIntegrator::ComputeElementMatrices is not overloaded"); }
|
||||
|
||||
virtual void MultAdd(const Vector &x, Vector &y) const = 0;
|
||||
|
||||
virtual void Mult(const Vector &x, Vector &y) const
|
||||
{ y.Fill<double>(0.0); MultAdd(x, y); }
|
||||
};
|
||||
|
||||
/// TODO: doxygen
|
||||
class BilinearForm : public mfem::PBilinearForm, public mfem::Operator
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// mfem::BilinearForm *bform;
|
||||
|
||||
mfem::Array<TensorBilinearFormIntegrator*> tbfi;
|
||||
bool has_assembled;
|
||||
|
||||
mutable FiniteElementSpace *trial_fes, *test_fes;
|
||||
|
||||
mutable Vector x_local, y_local;
|
||||
|
||||
mfem::Vector *element_matrices;
|
||||
OperatorHandle mat_e;
|
||||
|
||||
void TransferIntegrators();
|
||||
|
||||
void ComputeElementMatrices();
|
||||
|
||||
void InitRHS(const mfem::Array<int> &constraint_list,
|
||||
mfem::Vector &mfem_x, mfem::Vector &mfem_b,
|
||||
mfem::OperatorHandle &A,
|
||||
mfem::Vector &mfem_X, mfem::Vector &mfem_B,
|
||||
int copy_interior = 0) const;
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
BilinearForm(const Engine &e, mfem::BilinearForm &bf)
|
||||
: mfem::PBilinearForm(e, bf),
|
||||
// FIXME: for mixed bilinear forms
|
||||
mfem::Operator(*bf.FESpace()->GetVLayout().As<Layout>()),
|
||||
tbfi(),
|
||||
has_assembled(false),
|
||||
trial_fes(&bf.FESpace()->Get_PFESpace()->As<FiniteElementSpace>()),
|
||||
test_fes(&bf.FESpace()->Get_PFESpace()->As<FiniteElementSpace>()),
|
||||
x_local(trial_fes->GetELayout()),
|
||||
y_local(test_fes->GetELayout()),
|
||||
element_matrices(NULL),
|
||||
mat_e() { }
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~BilinearForm();
|
||||
|
||||
/// Return the engine as an OpenMP engine
|
||||
const Engine &OmpEngine() { return static_cast<const Engine&>(*engine); }
|
||||
|
||||
/** @brief Prolongation operator from linear algebra (linear system) vectors,
|
||||
to input vectors for the operator. `NULL` means identity. */
|
||||
virtual const Operator *GetProlongation() const { return trial_fes->GetProlongation(); }
|
||||
|
||||
/** @brief Restriction operator from input vectors for the operator to linear
|
||||
algebra (linear system) vectors. `NULL` means identity. */
|
||||
virtual const Operator *GetRestriction() const { return test_fes->GetRestriction(); }
|
||||
|
||||
/// Assemble the PBilinearForm.
|
||||
/** This method is called from the method BilinearForm::Assemble() of the
|
||||
associated BilinearForm #bform.
|
||||
@returns True, if the host assembly should be skipped. */
|
||||
virtual bool Assemble();
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual void FormSystemMatrix(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::OperatorHandle &A);
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual void FormLinearSystem(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::OperatorHandle &A, mfem::Vector &mfem_X, mfem::Vector &mfem_B,
|
||||
int copy_interior);
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual void RecoverFEMSolution(const mfem::Vector &mfem_X, const mfem::Vector &mfem_b,
|
||||
mfem::Vector &mfem_x);
|
||||
|
||||
/// Operator application: `y=A(x)`.
|
||||
virtual void Mult(const mfem::Vector &mfem_x, mfem::Vector &mfem_y) const;
|
||||
|
||||
/** @brief Action of the transpose operator: `y=A^t(x)`. The default behavior
|
||||
in class Operator is to generate an error. */
|
||||
virtual void MultTranspose(const mfem::Vector &mfem_x, mfem::Vector &mfem_y) const;
|
||||
};
|
||||
|
||||
class ConstrainedOperator : public mfem::Operator
|
||||
{
|
||||
const mfem::Operator *A;
|
||||
const bool own_A;
|
||||
const Array constraint_list;
|
||||
mutable Vector z, w;
|
||||
mutable mfem::Vector mfem_z, mfem_w;
|
||||
|
||||
public:
|
||||
ConstrainedOperator(mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraint_list_,
|
||||
bool own_A_ = false);
|
||||
|
||||
// Destructor: destroys the unconstrained Operator @a A if @a own_A is true.
|
||||
virtual ~ConstrainedOperator();
|
||||
|
||||
/** @brief Eliminate "essential boundary condition" values specified in @a x
|
||||
from the given right-hand side @a b.
|
||||
|
||||
Performs the following steps:
|
||||
|
||||
z = A((0,x_b)); b_i -= z_i; b_b = x_b;
|
||||
|
||||
where the "_b" subscripts denote the essential (boundary) indices/dofs of
|
||||
the vectors, and "_i" -- the rest of the entries. */
|
||||
void EliminateRHS(const mfem::Vector &mfem_x, mfem::Vector &mfem_b) const;
|
||||
|
||||
/** @brief Constrained operator action.
|
||||
|
||||
Performs the following steps:
|
||||
|
||||
z = A((x_i,0)); y_i = z_i; y_b = x_b;
|
||||
|
||||
where the "_b" subscripts denote the essential (boundary) indices/dofs of
|
||||
the vectors, and "_i" -- the rest of the entries. */
|
||||
virtual void Mult(const mfem::Vector &mfem_x, mfem::Vector &mfem_y) const;
|
||||
};
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#endif // MFEM_BACKENDS_OMP_BILINEAR_FORM_HPP
|
||||
@@ -0,0 +1,253 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "engine.hpp"
|
||||
#include "array.hpp"
|
||||
#include "layout.hpp"
|
||||
#include "vector.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "memory_resource.hpp"
|
||||
|
||||
#include <map>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
typedef std::map<std::string, std::string> keyval_pair_t;
|
||||
|
||||
template<typename T, typename P>
|
||||
static T remove_if(T beg, T end, P pred)
|
||||
{
|
||||
T dest = beg;
|
||||
for (T itr = beg;itr != end; ++itr)
|
||||
if (!pred(*itr))
|
||||
*(dest++) = *itr;
|
||||
return dest;
|
||||
}
|
||||
|
||||
void parse_token(const std::string &token, std::string &key, std::string &val)
|
||||
{
|
||||
std::size_t sep = token.find_first_of(':');
|
||||
if (sep > token.size()) mfem_error("Parse error");
|
||||
|
||||
key = token.substr(0, sep);
|
||||
key.erase(mfem::omp::remove_if(key.begin(), key.end(), isspace), key.end());
|
||||
key.erase(std::remove(key.begin(), key.end(), '\''), key.end());
|
||||
|
||||
val = token.substr(sep+1);
|
||||
val.erase(mfem::omp::remove_if(val.begin(), val.end(), isspace), val.end());
|
||||
val.erase(std::remove(val.begin(), val.end(), '\''), val.end());
|
||||
}
|
||||
|
||||
keyval_pair_t parse_engine_spec(const std::string &engine_spec)
|
||||
{
|
||||
keyval_pair_t map;
|
||||
std::size_t token_extent = 0;
|
||||
std::string key, val;
|
||||
while (token_extent < engine_spec.size())
|
||||
{
|
||||
const std::string remaining(engine_spec, token_extent);
|
||||
|
||||
std::size_t next_comma = remaining.find_first_of(',');
|
||||
if (next_comma == std::string::npos) next_comma = engine_spec.size() - 1;
|
||||
|
||||
const std::string token(remaining, 0, next_comma);
|
||||
parse_token(token, key, val);
|
||||
|
||||
map[key] = val;
|
||||
token_extent += next_comma+1;
|
||||
}
|
||||
return map;
|
||||
}
|
||||
|
||||
void Engine::Init(const std::string &engine_spec)
|
||||
{
|
||||
keyval_pair_t tokens(parse_engine_spec(engine_spec));
|
||||
keyval_pair_t::iterator it;
|
||||
|
||||
it = tokens.find("exec_target");
|
||||
if (it != tokens.end())
|
||||
{
|
||||
if (!std::strncmp(it->second.data(), "device", 6))
|
||||
{
|
||||
exec_target = Device;
|
||||
device_number = 0;
|
||||
}
|
||||
else if (!std::strncmp(it->second.data(), "host", 4))
|
||||
{
|
||||
exec_target = Host;
|
||||
device_number = -1;
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem_error("Parse error. Possible values for exec_target are: ['host', 'device']");
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
// Default to host if not specified
|
||||
mfem::out << "Did not specify exec_target. Defaulting to host..." << std::endl;
|
||||
exec_target = Host;
|
||||
device_number = -1;
|
||||
}
|
||||
|
||||
it = tokens.find("mem_type");
|
||||
if (it != tokens.end())
|
||||
{
|
||||
if (!std::strncmp(it->second.data(), "unified", 7))
|
||||
{
|
||||
#if defined(MFEM_USE_CUDAUM)
|
||||
memory_resources[0] = new UnifiedMemoryResource();
|
||||
unified_memory = true;
|
||||
#else
|
||||
mfem_error("Have not compiled support for CUDA unified memory.");
|
||||
#endif
|
||||
}
|
||||
else if (!std::strncmp(it->second.data(), "separate", 4))
|
||||
{
|
||||
memory_resources[0] = new NewDeleteMemoryResource();
|
||||
unified_memory = false;
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem_error("Parse error. Possible values for mem_type are: ['separate', 'unified']");
|
||||
}
|
||||
}
|
||||
else {
|
||||
if (exec_target == Device)
|
||||
{
|
||||
#if defined(MFEM_USE_CUDAUM)
|
||||
mfem::out << "Did not specify mem_type in engine spec. Defaulting to unified memory..." << std::endl;
|
||||
// Default to unified memory
|
||||
memory_resources[0] = new UnifiedMemoryResource();
|
||||
unified_memory = true;
|
||||
#else
|
||||
mfem::out << "Did not specify mem_type in engine spec. Defaulting to standard host memory..." << std::endl;
|
||||
memory_resources[0] = new NewDeleteMemoryResource();
|
||||
unified_memory = false;
|
||||
#endif
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem::out << "Did not specify mem_type in engine spec. Defaulting to standard host memory..." << std::endl;
|
||||
memory_resources[0] = new NewDeleteMemoryResource();
|
||||
unified_memory = false;
|
||||
}
|
||||
}
|
||||
|
||||
it = tokens.find("mult_engine");
|
||||
if (it != tokens.end())
|
||||
{
|
||||
if (!std::strncmp(it->second.data(), "acrotensor", 10))
|
||||
{
|
||||
mult_type = Acrotensor;
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem_error("Parse error. Possible values for mem_type are: ['acrotensor'].");
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem::out << "Did not specify mult_engine in engine spec. Defaulting to Acrotensor..." << std::endl;
|
||||
#ifndef MFEM_USE_ACROTENSOR
|
||||
mfem_error("Must compile with Acrotensor support");
|
||||
#endif
|
||||
mult_type = Acrotensor;
|
||||
}
|
||||
}
|
||||
|
||||
Engine::Engine(const std::string &engine_spec)
|
||||
: mfem::Engine(NULL, 1, 1)
|
||||
{
|
||||
Init(engine_spec);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
Engine::Engine(MPI_Comm _comm, const std::string &engine_spec)
|
||||
: mfem::Engine(NULL, 1, 1)
|
||||
{
|
||||
comm = _comm;
|
||||
Init(engine_spec);
|
||||
}
|
||||
#endif
|
||||
|
||||
DLayout Engine::MakeLayout(std::size_t size) const
|
||||
{
|
||||
return DLayout(new Layout(*this, size));
|
||||
}
|
||||
|
||||
DLayout Engine::MakeLayout(const mfem::Array<std::size_t> &offsets) const
|
||||
{
|
||||
MFEM_ASSERT(offsets.Size() == 2,
|
||||
"multiple workers are not supported yet");
|
||||
return DLayout(new Layout(*this, offsets.Last()));
|
||||
}
|
||||
|
||||
DArray Engine::MakeArray(PLayout &layout, std::size_t item_size) const
|
||||
{
|
||||
MFEM_ASSERT(dynamic_cast<Layout *>(&layout) != NULL,
|
||||
"invalid input layout");
|
||||
Layout *lt = static_cast<Layout *>(&layout);
|
||||
return DArray(new Array(*lt, item_size));
|
||||
}
|
||||
|
||||
DVector Engine::MakeVector(PLayout &layout, int type_id) const
|
||||
{
|
||||
MFEM_ASSERT(type_id == ScalarId<double>::value, "invalid type_id");
|
||||
MFEM_ASSERT(dynamic_cast<Layout *>(&layout) != NULL,
|
||||
"invalid input layout");
|
||||
Layout *lt = static_cast<Layout *>(&layout);
|
||||
return DVector(new Vector(*lt));
|
||||
}
|
||||
|
||||
DFiniteElementSpace Engine::MakeFESpace(mfem::FiniteElementSpace &fespace) const
|
||||
{
|
||||
return DFiniteElementSpace(new FiniteElementSpace(*this, fespace));
|
||||
}
|
||||
|
||||
DBilinearForm Engine::MakeBilinearForm(mfem::BilinearForm &bf) const
|
||||
{
|
||||
return DBilinearForm(new BilinearForm(*this, bf));
|
||||
}
|
||||
|
||||
void Engine::AssembleLinearForm(LinearForm &l_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
}
|
||||
|
||||
mfem::Operator *Engine::MakeOperator(const MixedBilinearForm &mbl_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
mfem::Operator *Engine::MakeOperator(const NonlinearForm &nl_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
@@ -0,0 +1,123 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OMP_ENGINE_HPP
|
||||
#define MFEM_BACKENDS_OMP_ENGINE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "../base/engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
enum ExecutionTarget { Host, Device };
|
||||
|
||||
enum IntegratorType { Acrotensor };
|
||||
|
||||
class Engine : public mfem::Engine
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// mfem::Backend *backend;
|
||||
#ifdef MFEM_USE_MPI
|
||||
// MPI_Comm comm;
|
||||
#endif
|
||||
// int num_mem_res;
|
||||
// int num_workers;
|
||||
// MemoryResource **memory_resources;
|
||||
// double *workers_weights;
|
||||
// int *workers_mem_res;
|
||||
|
||||
enum ExecutionTarget exec_target;
|
||||
bool unified_memory;
|
||||
int device_number;
|
||||
IntegratorType mult_type;
|
||||
|
||||
void Init(const std::string &engine_spec);
|
||||
|
||||
public:
|
||||
Engine(const std::string &engine_spec);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
Engine(MPI_Comm comm, const std::string &engine_spec);
|
||||
#endif
|
||||
|
||||
virtual ~Engine() { }
|
||||
|
||||
/**
|
||||
@name OMP specific interface, used by other objects in the OMP backend
|
||||
*/
|
||||
///@{
|
||||
|
||||
IntegratorType IntegType() const { return mult_type; }
|
||||
|
||||
ExecutionTarget ExecTarget() const { return exec_target; }
|
||||
|
||||
inline bool UnifiedMemory() const { return unified_memory; }
|
||||
|
||||
void* Malloc(std::size_t bytes) const
|
||||
{
|
||||
return memory_resources[0]->Allocate(bytes, 16);
|
||||
}
|
||||
|
||||
void Dealloc(void *ptr, std::size_t bytes = 0) const
|
||||
{
|
||||
memory_resources[0]->Deallocate(ptr, bytes);
|
||||
}
|
||||
|
||||
///@}
|
||||
// End: OMP specific interface
|
||||
|
||||
/**
|
||||
@name Virtual interface: finite element data structures and algorithms
|
||||
*/
|
||||
///@{
|
||||
|
||||
virtual DLayout MakeLayout(std::size_t size) const;
|
||||
virtual DLayout MakeLayout(const mfem::Array<std::size_t> &offsets) const;
|
||||
|
||||
virtual DArray MakeArray(PLayout &layout, std::size_t item_size) const;
|
||||
|
||||
virtual DVector MakeVector(PLayout &layout,
|
||||
int type_id = ScalarId<double>::value) const;
|
||||
|
||||
virtual DFiniteElementSpace MakeFESpace(mfem::FiniteElementSpace &
|
||||
fespace) const;
|
||||
|
||||
virtual DBilinearForm MakeBilinearForm(mfem::BilinearForm &bf) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual void AssembleLinearForm(LinearForm &l_form) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual mfem::Operator *MakeOperator(const MixedBilinearForm &mbl_form) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual mfem::Operator *MakeOperator(const NonlinearForm &nl_form) const;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#endif // MFEM_BACKENDS_OMP_ENGINE_HPP
|
||||
@@ -0,0 +1,237 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
FiniteElementSpace::FiniteElementSpace(const Engine &e,
|
||||
mfem::FiniteElementSpace &fespace)
|
||||
: PFiniteElementSpace(e, fespace),
|
||||
e_layout(e, 0),
|
||||
tensor_offsets(NULL),
|
||||
tensor_indices(NULL),
|
||||
prolongation(NULL),
|
||||
restriction(NULL)
|
||||
{
|
||||
std::size_t lsize = 0;
|
||||
for (int e = 0; e < fespace.GetNE(); e++) { lsize += fespace.GetFE(e)->GetDof(); }
|
||||
e_layout.Resize(lsize);
|
||||
// The e_layout will be stored inside multiple shared DLayout objects
|
||||
e_layout.DontDelete();
|
||||
}
|
||||
|
||||
void FiniteElementSpace::BuildDofMaps()
|
||||
{
|
||||
mfem::FiniteElementSpace *mfem_fes = GetFESpace();
|
||||
|
||||
const int local_size = GetELayout().Size();
|
||||
const int global_size = mfem_fes->GetVLayout()->Size();
|
||||
const int vdim = mfem_fes->GetVDim();
|
||||
|
||||
// Now we can allocate and fill the global map
|
||||
tensor_offsets = new mfem::Array<int>(*(new Layout(OmpEngine(), global_size + 1)));
|
||||
tensor_indices = new mfem::Array<int>(*(new Layout(OmpEngine(), local_size)));
|
||||
|
||||
mfem::Array<int> &offsets = *tensor_offsets;
|
||||
mfem::Array<int> &indices = *tensor_indices;
|
||||
|
||||
mfem::Array<int> global_map(local_size);
|
||||
mfem::Array<int> elem_vdof;
|
||||
|
||||
int offset = 0;
|
||||
for (int e = 0; e < mfem_fes->GetNE(); e++)
|
||||
{
|
||||
const FiniteElement *fe = mfem_fes->GetFE(e);
|
||||
const int dofs = fe->GetDof();
|
||||
const TensorBasisElement *tfe = dynamic_cast<const TensorBasisElement *>(fe);
|
||||
const mfem::Array<int> &dof_map = tfe->GetDofMap();
|
||||
|
||||
mfem_fes->GetElementVDofs(e, elem_vdof);
|
||||
|
||||
for (int vd = 0; vd < vdim; vd++)
|
||||
for (int i = 0; i < dofs; i++)
|
||||
{
|
||||
global_map[offset + dofs*vd + i] = elem_vdof[dofs*vd + dof_map[i]];
|
||||
}
|
||||
offset += dofs * vdim;
|
||||
}
|
||||
|
||||
// global_map[i] = index in global vector for local dof i
|
||||
// NOTE: multiple i values will yield same global_map[i] for shared DOF.
|
||||
|
||||
// We want to now invert this map so we have indices[j] = (local dof for global dof j).
|
||||
|
||||
// Zero the offset vector
|
||||
offsets = 0;
|
||||
|
||||
// Keep track of how many local dof point to its global dof
|
||||
// Count how many times each dof gets hit
|
||||
for (int i = 0; i < local_size; i++)
|
||||
{
|
||||
const int g = global_map[i];
|
||||
++offsets[g + 1];
|
||||
}
|
||||
// Aggregate the offsets
|
||||
for (int i = 1; i <= global_size; i++)
|
||||
{
|
||||
offsets[i] += offsets[i - 1];
|
||||
}
|
||||
|
||||
for (int i = 0; i < local_size; i++)
|
||||
{
|
||||
const int g = global_map[i];
|
||||
indices[offsets[g]++] = i;
|
||||
}
|
||||
|
||||
// Shift the offset vector back by one, since it was used as a
|
||||
// counter above.
|
||||
for (int i = global_size; i > 0; i--)
|
||||
{
|
||||
offsets[i] = offsets[i - 1];
|
||||
}
|
||||
offsets[0] = 0;
|
||||
|
||||
offsets.Push();
|
||||
indices.Push();
|
||||
}
|
||||
|
||||
/// Convert an E vector to L vector
|
||||
void FiniteElementSpace::ToLVector(const Vector &e_vector, Vector &l_vector)
|
||||
{
|
||||
if (tensor_indices == NULL) BuildDofMaps();
|
||||
|
||||
if (l_vector.Size() != (std::size_t) GetFESpace()->GetVSize())
|
||||
{
|
||||
l_vector.Resize<double>(GetFESpace()->GetVLayout(), NULL);
|
||||
}
|
||||
|
||||
const int lsize = l_vector.Size();
|
||||
const int *offsets = tensor_offsets->Get_PArray()->As<Array>().GetData<int>();
|
||||
const int *indices = tensor_indices->Get_PArray()->As<Array>().GetData<int>();
|
||||
|
||||
const double *e_data = e_vector.GetData<double>();
|
||||
double *l_data = l_vector.GetData<double>();
|
||||
|
||||
const bool use_target = l_vector.ComputeOnDevice();
|
||||
const bool use_parallel = (use_target || lsize > 1000);
|
||||
|
||||
#pragma omp target teams distribute parallel for \
|
||||
map (to: offsets, indices, l_data, e_data) \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel)
|
||||
for (int i = 0; i < lsize; i++)
|
||||
{
|
||||
const int offset = offsets[i];
|
||||
const int next_offset = offsets[i + 1];
|
||||
double dof_value = 0;
|
||||
for (int j = offset; j < next_offset; j++)
|
||||
{
|
||||
dof_value += e_data[indices[j]];
|
||||
}
|
||||
l_data[i] = dof_value;
|
||||
}
|
||||
}
|
||||
|
||||
/// Covert an L vector to E vector
|
||||
void FiniteElementSpace::ToEVector(const Vector &l_vector, Vector &e_vector)
|
||||
{
|
||||
if (tensor_indices == NULL) BuildDofMaps();
|
||||
|
||||
if (e_vector.Size() != (std::size_t) e_layout.Size())
|
||||
{
|
||||
e_vector.Resize<double>(GetELayout(), NULL);
|
||||
}
|
||||
|
||||
const int lsize = l_vector.Size();
|
||||
const int *offsets = tensor_offsets->Get_PArray()->As<Array>().GetData<int>();
|
||||
const int *indices = tensor_indices->Get_PArray()->As<Array>().GetData<int>();
|
||||
|
||||
const double *l_data = l_vector.GetData<double>();
|
||||
double *e_data = e_vector.GetData<double>();
|
||||
|
||||
const bool use_target = l_vector.ComputeOnDevice();
|
||||
const bool use_parallel = (use_target || lsize > 1000);
|
||||
|
||||
#pragma omp target teams distribute parallel for \
|
||||
map (to: offsets, indices, l_data, e_data) \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel)
|
||||
for (int i = 0; i < lsize; i++)
|
||||
{
|
||||
const int offset = offsets[i];
|
||||
const int next_offset = offsets[i + 1];
|
||||
const double dof_value = l_data[i];
|
||||
for (int j = offset; j < next_offset; j++)
|
||||
{
|
||||
e_data[indices[j]] = dof_value;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/// Get the finite element space prolongation matrix
|
||||
const Operator *FiniteElementSpace::GetProlongation() const
|
||||
{
|
||||
// FIXME: This relies on unified memory if using a device other than the CPU
|
||||
if (!prolongation)
|
||||
{
|
||||
Layout &v_layout = GetVLayout();
|
||||
Layout &t_layout = GetTrueVLayout();
|
||||
|
||||
const mfem::Operator *op = GetFESpace()->GetProlongationMatrix();
|
||||
if (!op)
|
||||
{
|
||||
prolongation = new mfem::IdentityOperator(t_layout);
|
||||
}
|
||||
else
|
||||
{
|
||||
prolongation = new BackendOperator(t_layout, v_layout, op);
|
||||
}
|
||||
}
|
||||
return prolongation;
|
||||
}
|
||||
|
||||
/// Get the finite element space restriction matrix
|
||||
const Operator *FiniteElementSpace::GetRestriction() const
|
||||
{
|
||||
// FIXME: This relies on unified memory if using a device other than the CPU
|
||||
if (!restriction)
|
||||
{
|
||||
Layout &v_layout = GetVLayout();
|
||||
Layout &t_layout = GetTrueVLayout();
|
||||
|
||||
const mfem::Operator *op = GetFESpace()->GetRestrictionMatrix();
|
||||
if (!op)
|
||||
{
|
||||
restriction = new mfem::IdentityOperator(t_layout);
|
||||
}
|
||||
else
|
||||
{
|
||||
restriction = new BackendOperator(v_layout, t_layout, op);
|
||||
}
|
||||
}
|
||||
return restriction;
|
||||
}
|
||||
|
||||
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
@@ -0,0 +1,106 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OMP_FESPACE_HPP
|
||||
#define MFEM_BACKENDS_OMP_FESPACE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "engine.hpp"
|
||||
#include "array.hpp"
|
||||
#include "vector.hpp"
|
||||
#include "../../fem/fem.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
/*
|
||||
Wraps an mfem::Operator that does not contain layout information.
|
||||
*/
|
||||
class BackendOperator : public mfem::Operator
|
||||
{
|
||||
const mfem::Operator *op;
|
||||
|
||||
public:
|
||||
BackendOperator(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::Operator *op_) : Operator(in_layout, out_layout), op(op_) { }
|
||||
|
||||
virtual void Mult(const mfem::Vector &x, mfem::Vector &y) const { op->Mult(x, y); }
|
||||
virtual void MultTranspose(const mfem::Vector &x, mfem::Vector &y) const { op->MultTranspose(x, y); }
|
||||
};
|
||||
|
||||
/// TODO: doxygen
|
||||
class FiniteElementSpace : public mfem::PFiniteElementSpace
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// mfem::FiniteElementSpace *fes;
|
||||
|
||||
Layout e_layout;
|
||||
|
||||
mfem::Array<int> *tensor_offsets, *tensor_indices;
|
||||
|
||||
mutable mfem::Operator *prolongation, *restriction;
|
||||
|
||||
void BuildDofMaps();
|
||||
|
||||
public:
|
||||
/// Nearly-empty class that stores a pointer to a mfem::FiniteElementSpace instance and the engine
|
||||
FiniteElementSpace(const Engine &e, mfem::FiniteElementSpace &fespace);
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~FiniteElementSpace()
|
||||
{
|
||||
delete tensor_offsets;
|
||||
delete tensor_indices;
|
||||
delete prolongation;
|
||||
delete restriction;
|
||||
}
|
||||
|
||||
Layout &GetELayout() { return e_layout; }
|
||||
|
||||
Layout &GetVLayout() const
|
||||
{ return *fes->GetVLayout().As<Layout>(); }
|
||||
|
||||
Layout &GetTrueVLayout() const
|
||||
{ return *fes->GetTrueVLayout().As<Layout>(); }
|
||||
|
||||
/// Return the engine as an OpenMP engine
|
||||
const Engine &OmpEngine() { return static_cast<const Engine&>(*engine); }
|
||||
|
||||
/// Convert an E vector to L vector
|
||||
void ToLVector(const Vector &e_vector, Vector &l_vector);
|
||||
|
||||
/// Covert an L vector to E vector
|
||||
void ToEVector(const Vector &l_vector, Vector &e_vector);
|
||||
|
||||
/// Get the finite element space prolongation matrix
|
||||
const Operator *GetProlongation() const;
|
||||
|
||||
/// Get the finite element space restriction matrix
|
||||
const Operator *GetRestriction() const;
|
||||
|
||||
};
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#endif // MFEM_BACKENDS_OMP_FESPACE_HPP
|
||||
@@ -0,0 +1,40 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "layout.hpp"
|
||||
#include "../../general/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
void Layout::Resize(std::size_t new_size)
|
||||
{
|
||||
size = new_size;
|
||||
}
|
||||
|
||||
void Layout::Resize(const Array<std::size_t> &offsets)
|
||||
{
|
||||
MFEM_ASSERT(offsets.Size() == 2,
|
||||
"multiple workers are not supported yet");
|
||||
size = offsets.Last();
|
||||
}
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
@@ -0,0 +1,71 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OMP_LAYOUT_HPP
|
||||
#define MFEM_BACKENDS_OMP_LAYOUT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "../base/layout.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
class Layout : public mfem::PLayout
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// std::size_t size;
|
||||
|
||||
public:
|
||||
Layout(const Engine &e, std::size_t s = 0) : PLayout(e, s) { }
|
||||
|
||||
const Engine &OmpEngine() const
|
||||
{ return *static_cast<const Engine *>(engine.Get()); }
|
||||
|
||||
void *Alloc(std::size_t bytes) const
|
||||
{ return OmpEngine().Malloc(bytes); }
|
||||
|
||||
void Dealloc(void *ptr) const
|
||||
{ return OmpEngine().Dealloc(ptr); }
|
||||
|
||||
virtual ~Layout() { }
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/// Resize the layout
|
||||
virtual void Resize(std::size_t new_size);
|
||||
|
||||
/// Resize the layout based on the given worker offsets
|
||||
virtual void Resize(const Array<std::size_t> &offsets);
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#endif // MFEM_BACKENDS_OMP_LAYOUT_HPP
|
||||
@@ -0,0 +1,57 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "memory_resource.hpp"
|
||||
#include "../../general/error.hpp"
|
||||
|
||||
#ifdef MFEM_USE_CUDAUM
|
||||
#include "cuda_runtime.h"
|
||||
#include "cuda.h"
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
#ifdef MFEM_USE_CUDAUM
|
||||
void *UnifiedMemoryResource::DoAllocate(std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
void *p = NULL;
|
||||
if (bytes > 0)
|
||||
{
|
||||
cudaError_t ret = cudaMallocManaged(&p, bytes);
|
||||
MFEM_VERIFY(ret == cudaSuccess, "");
|
||||
}
|
||||
return p;
|
||||
}
|
||||
|
||||
void UnifiedMemoryResource::DoDeallocate(void *p, std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
if (p != NULL)
|
||||
{
|
||||
cudaFree(p);
|
||||
}
|
||||
}
|
||||
#endif
|
||||
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
@@ -0,0 +1,44 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OMP_MEMORY_RESOURCE_HPP
|
||||
#define MFEM_BACKENDS_OMP_MEMORY_RESOURCE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "../../backends/base/memory_resource.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
/// Polymorphic memory resource. Similar to C++17's std::pmr::memory_resource.
|
||||
|
||||
#ifdef MFEM_USE_CUDAUM
|
||||
/** @brief Memory resource using unified memory. */
|
||||
class UnifiedMemoryResource : public MemoryResource
|
||||
{
|
||||
protected:
|
||||
virtual void *DoAllocate(std::size_t bytes, std::size_t alignment);
|
||||
virtual void DoDeallocate(void *p, std::size_t bytes, std::size_t alignment);
|
||||
};
|
||||
#endif
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#endif // MFEM_BACKENDS_OMP_MEMORY_RESOURCE_HPP
|
||||
@@ -0,0 +1,205 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "../../linalg/vector.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
PVector *Vector::DoVectorClone(bool copy_data, void **buffer,
|
||||
int buffer_type_id) const
|
||||
{
|
||||
MFEM_ASSERT(buffer_type_id == ScalarId<double>::value, "");
|
||||
Vector *new_vector = new Vector(OmpLayout());
|
||||
if (copy_data)
|
||||
{
|
||||
const std::size_t total_size = sizeof(double) * OmpLayout().Size();
|
||||
if (!ComputeOnDevice())
|
||||
std::memcpy(new_vector->GetData<void>(), data, total_size);
|
||||
else
|
||||
{
|
||||
char *new_data = new_vector->GetData<char>();
|
||||
#pragma omp target teams distribute parallel for is_device_ptr(new_data)
|
||||
for (std::size_t i = 0; i < total_size; i++) new_data[i] = data[i];
|
||||
}
|
||||
}
|
||||
if (buffer)
|
||||
{
|
||||
*buffer = new_vector->GetData<void>();
|
||||
}
|
||||
return new_vector;
|
||||
}
|
||||
|
||||
void Vector::DoDotProduct(const PVector &x, void *result,
|
||||
int result_type_id) const
|
||||
{
|
||||
// Can be called when Size() == 0, e.g. when an MPI-parallel vector has a
|
||||
// local size of 0.
|
||||
|
||||
MFEM_ASSERT(result_type_id == ScalarId<double>::value, "");
|
||||
double *res = (double *)result;
|
||||
double local_dot = 0.;
|
||||
MFEM_ASSERT(dynamic_cast<const Vector *>(&x) != NULL, "invalid Vector type");
|
||||
const Vector *xp = static_cast<const Vector *>(&x);
|
||||
MFEM_ASSERT(this->Size() == xp->Size(), "");
|
||||
|
||||
const double *ptr = GetData<double>();
|
||||
const double *xptr = xp->GetData<double>();
|
||||
const std::size_t size = Size();
|
||||
|
||||
if (!ComputeOnDevice())
|
||||
{
|
||||
for (std::size_t i = 0; i < size; i++) local_dot += ptr[i] * xptr[i];
|
||||
}
|
||||
else
|
||||
{
|
||||
#pragma omp target teams distribute parallel for map(to: ptr, xptr) reduction(+:local_dot)
|
||||
for (std::size_t i = 0; i < size; i++) local_dot += ptr[i] * xptr[i];
|
||||
}
|
||||
|
||||
*res = local_dot;
|
||||
#ifdef MFEM_USE_MPI
|
||||
MPI_Comm comm = OmpLayout().OmpEngine().GetComm();
|
||||
if (comm != MPI_COMM_NULL)
|
||||
{
|
||||
MPI_Allreduce(&local_dot, res, 1, MPI_DOUBLE, MPI_SUM, comm);
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
void Vector::DoAxpby(const void *a, const PVector &x,
|
||||
const void *b, const PVector &y,
|
||||
int ab_type_id)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
MFEM_ASSERT(ab_type_id == ScalarId<double>::value, "");
|
||||
|
||||
const double da = *static_cast<const double *>(a);
|
||||
const double db = *static_cast<const double *>(b);
|
||||
MFEM_ASSERT(da == 0.0 || dynamic_cast<const Vector *>(&x) != NULL,
|
||||
"invalid Vector x");
|
||||
MFEM_ASSERT(db == 0.0 || dynamic_cast<const Vector *>(&y) != NULL,
|
||||
"invalid Vector y");
|
||||
const Vector *xp = static_cast<const Vector *>(&x);
|
||||
const Vector *yp = static_cast<const Vector *>(&y);
|
||||
|
||||
MFEM_ASSERT(da == 0.0 || this->Size() == xp->Size(), "");
|
||||
MFEM_ASSERT(db == 0.0 || this->Size() == yp->Size(), "");
|
||||
|
||||
const std::size_t size = Size();
|
||||
const std::size_t critical_size = 1000;
|
||||
const double *xd = xp->GetData<double>();
|
||||
const double *yd = yp->GetData<double>();
|
||||
double *td = GetData<double>();
|
||||
|
||||
const bool use_target = ComputeOnDevice();
|
||||
const bool use_parallel = (use_target || size > critical_size);
|
||||
|
||||
if (da == 0.0)
|
||||
{
|
||||
if (db == 0.0)
|
||||
{
|
||||
OmpFill(&da);
|
||||
}
|
||||
else
|
||||
{
|
||||
if (td == yd)
|
||||
{
|
||||
// *this *= db
|
||||
#pragma omp target teams distribute parallel for \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel) map (to: db)
|
||||
for (std::size_t i = 0; i < size; i++) td[i] *= db;
|
||||
}
|
||||
else
|
||||
{
|
||||
// *this = db * y
|
||||
#pragma omp target teams distribute parallel for \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel) map (to: yd, db)
|
||||
for (std::size_t i = 0; i < size; i++) td[i] = yd[i] * db;
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
if (db == 0.0)
|
||||
{
|
||||
if (td == xd)
|
||||
{
|
||||
// *this *= da
|
||||
#pragma omp target teams distribute parallel for \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel) map (to: da)
|
||||
for (std::size_t i = 0; i < size; i++) td[i] *= da;
|
||||
}
|
||||
else
|
||||
{
|
||||
// *this = da * x
|
||||
#pragma omp target teams distribute parallel for \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel) map (to: xd, da)
|
||||
for (std::size_t i = 0; i < size; i++) td[i] = xd[i] * da;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ASSERT(xd != yd, "invalid input");
|
||||
if (td == xd)
|
||||
{
|
||||
// *this = da * (*this) + db * y
|
||||
#pragma omp target teams distribute parallel for \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel) map (to: da, td, db, yd)
|
||||
for (std::size_t i = 0; i < size; i++) td[i] = da * td[i] + db * yd[i];
|
||||
}
|
||||
else if (td == yd)
|
||||
{
|
||||
// *this = da * x + db * (*this)
|
||||
#pragma omp target teams distribute parallel for \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel) map (to: da, xd, db, td)
|
||||
for (std::size_t i = 0; i < size; i++) td[i] = da * xd[i] + db * td[i];
|
||||
}
|
||||
else
|
||||
{
|
||||
// *this = da * x + db * y
|
||||
#pragma omp target teams distribute parallel for \
|
||||
if (target: use_target) \
|
||||
if (parallel: use_parallel) map (to: da, xd, db, yd)
|
||||
for (std::size_t i = 0; i < size; i++) td[i] = da * xd[i] + db * yd[i];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
mfem::Vector Vector::Wrap()
|
||||
{
|
||||
return mfem::Vector(*this);
|
||||
}
|
||||
|
||||
const mfem::Vector Vector::Wrap() const
|
||||
{
|
||||
return mfem::Vector(*const_cast<Vector*>(this));
|
||||
}
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
@@ -0,0 +1,71 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OMP_VECTOR_HPP
|
||||
#define MFEM_BACKENDS_OMP_VECTOR_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#include "../base/vector.hpp"
|
||||
#include "array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace omp
|
||||
{
|
||||
|
||||
class Vector : virtual public Array, public mfem::PVector
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// DLayout layout;
|
||||
// char *data;
|
||||
// std::size_t size;
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
virtual PVector *DoVectorClone(bool copy_data, void **buffer,
|
||||
int buffer_type_id) const;
|
||||
|
||||
virtual void DoDotProduct(const PVector &x, void *result,
|
||||
int result_type_id) const;
|
||||
|
||||
virtual void DoAxpby(const void *a, const PVector &x,
|
||||
const void *b, const PVector &y,
|
||||
int ab_type_id);
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
|
||||
public:
|
||||
Vector(Layout <)
|
||||
: PArray(lt), Array(lt, sizeof(double)), PVector(lt)
|
||||
{ }
|
||||
|
||||
mfem::Vector Wrap();
|
||||
|
||||
const mfem::Vector Wrap() const;
|
||||
};
|
||||
|
||||
} // namespace mfem::omp
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OMP)
|
||||
|
||||
#endif // MFEM_BACKENDS_OMP_VECTOR_HPP
|
||||
@@ -74,7 +74,7 @@
|
||||
|
||||
IF (NOT COMMAND PRINT_VAR)
|
||||
FUNCTION(PRINT_VAR VAR_NAME)
|
||||
MESSAGE(STATUS "${VAR_NAME} = '${${VAR_NAME}}'")
|
||||
MESSAGE("-- " "${VAR_NAME} = '${${VAR_NAME}}'")
|
||||
ENDFUNCTION()
|
||||
ENDIF()
|
||||
|
||||
@@ -166,108 +166,17 @@ IF (USE_XSDK_DEFAULTS)
|
||||
ENDIF()
|
||||
XSDK_HANDLE_LANG_DEFAULTS(Fortran FC "FFLAGS;FCFLAGS")
|
||||
ENDIF()
|
||||
|
||||
|
||||
# Set XSDK defaults for other CMake variables
|
||||
|
||||
|
||||
IF ("${BUILD_SHARED_LIBS}" STREQUAL "")
|
||||
MESSAGE("-- " "XSDK: Setting default BUILD_SHARED_LIBS=TRUE")
|
||||
SET(BUILD_SHARED_LIBS TRUE CACHE BOOL "Set by default in XSDK mode")
|
||||
ENDIF()
|
||||
|
||||
|
||||
IF ("${CMAKE_BUILD_TYPE}" STREQUAL "")
|
||||
MESSAGE("-- " "XSDK: Setting default CMAKE_BUILD_TYPE=DEBUG")
|
||||
SET(CMAKE_BUILD_TYPE DEBUG CACHE STRING "Set by default in XSDK mode")
|
||||
ENDIF()
|
||||
|
||||
ENDIF()
|
||||
|
||||
|
||||
##################################################################################
|
||||
#
|
||||
# MFEM-specific additions: set TPL MFEM_USE_* defaults
|
||||
#
|
||||
##################################################################################
|
||||
|
||||
IF (DEFINED TPL_ENABLE_MPI)
|
||||
SET(MFEM_USE_MPI ${TPL_ENABLE_MPI} CACHE BOOL "Enable MPI parallel build" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_METIS)
|
||||
SET(MFEM_USE_METIS ${TPL_ENABLE_METIS} CACHE BOOL "Enable METIS usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_GZSTREAM)
|
||||
SET(MFEM_USE_GZSTREAM ${TPL_ENABLE_GZSTREAM} CACHE BOOL "Enable gzstream for compressed data streams." FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_LIBUNWIND)
|
||||
SET(MFEM_USE_LIBUNWIND ${TPL_ENABLE_LIBUNWIND} CACHE BOOL "Enable backtrace for errors." FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_LAPACK)
|
||||
SET(MFEM_USE_LAPACK ${TPL_ENABLE_LAPACK} CACHE BOOL "Enable LAPACK usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_SUNDIALS)
|
||||
SET(MFEM_USE_SUNDIALS ${TPL_ENABLE_SUNDIALS} CACHE BOOL "Enable SUNDIALS usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_MESQUITE)
|
||||
SET(MFEM_USE_MESQUITE ${TPL_ENABLE_MESQUITE} CACHE BOOL "Enable MESQUITE usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_SUITESPARSE)
|
||||
SET(MFEM_USE_SUITESPARSE ${TPL_ENABLE_SUITESPARSE} CACHE BOOL "Enable SuiteSparse usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_SUPERLU)
|
||||
SET(MFEM_USE_SUPERLU ${TPL_ENABLE_SUPERLU} CACHE BOOL "Enable SuperLU_DIST usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_STRUMPACK)
|
||||
SET(MFEM_USE_STRUMPACK ${TPL_ENABLE_STRUMPACK} CACHE BOOL "Enable STRUMPACK usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_GECKO)
|
||||
SET(MFEM_USE_GECKO ${TPL_ENABLE_GECKO} CACHE BOOL "Enable GECKO usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_GNUTLS)
|
||||
SET(MFEM_USE_GNUTLS ${TPL_ENABLE_GNUTLS} CACHE BOOL "Enable GNUTLS usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_NETCDF)
|
||||
SET(MFEM_USE_NETCDF ${TPL_ENABLE_NETCDF} CACHE BOOL "Enable NETCDF usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_PETSC)
|
||||
SET(MFEM_USE_PETSC ${TPL_ENABLE_PETSC} CACHE BOOL "Enable PETSc support." FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_MPFR)
|
||||
SET(MFEM_USE_MPFR ${TPL_ENABLE_MPFR} CACHE BOOL "Enable MPFR usage." FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_SIDRE)
|
||||
SET(MFEM_USE_SIDRE ${TPL_ENABLE_SIDRE} CACHE BOOL "Enable Axom/Sidre usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_CONDUIT)
|
||||
SET(MFEM_USE_CONDUIT ${TPL_ENABLE_CONDUIT} CACHE BOOL "Enable Conduit usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_PUMI)
|
||||
SET(MFEM_USE_PUMI ${TPL_ENABLE_PUMI} CACHE BOOL "Enable PUMI" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_CUDA)
|
||||
SET(MFEM_USE_CUDA ${TPL_ENABLE_CUDA} CACHE BOOL "Enable CUDA" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_OCCA)
|
||||
SET(MFEM_USE_OCCA ${TPL_ENABLE_OCCA} CACHE BOOL "Enable OCCA" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_RAJA)
|
||||
SET(MFEM_USE_RAJA ${TPL_ENABLE_RAJA} CACHE BOOL "Enable RAJA" FORCE)
|
||||
ENDIF()
|
||||
|
||||
@@ -25,7 +25,6 @@ set(MFEM_USE_LIBUNWIND @MFEM_USE_LIBUNWIND@)
|
||||
set(MFEM_USE_LAPACK @MFEM_USE_LAPACK@)
|
||||
set(MFEM_THREAD_SAFE @MFEM_THREAD_SAFE@)
|
||||
set(MFEM_USE_OPENMP @MFEM_USE_OPENMP@)
|
||||
set(MFEM_USE_LEGACY_OPENMP @MFEM_USE_LEGACY_OPENMP@)
|
||||
set(MFEM_USE_MEMALLOC @MFEM_USE_MEMALLOC@)
|
||||
set(MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@)
|
||||
set(MFEM_USE_SUNDIALS @MFEM_USE_SUNDIALS@)
|
||||
@@ -40,11 +39,6 @@ set(MFEM_USE_PETSC @MFEM_USE_PETSC@)
|
||||
set(MFEM_USE_MPFR @MFEM_USE_MPFR@)
|
||||
set(MFEM_USE_SIDRE @MFEM_USE_SIDRE@)
|
||||
set(MFEM_USE_CONDUIT @MFEM_USE_CONDUIT@)
|
||||
set(MFEM_USE_PUMI @MFEM_USE_PUMI@)
|
||||
set(MFEM_USE_MM @MFEM_USE_MM@)
|
||||
set(MFEM_USE_CUDA @MFEM_USE_CUDA@)
|
||||
set(MFEM_USE_OCCA @MFEM_USE_OCCA@)
|
||||
set(MFEM_USE_RAJA @MFEM_USE_RAJA@)
|
||||
|
||||
set(MFEM_CXX_COMPILER "@CMAKE_CXX_COMPILER@")
|
||||
set(MFEM_CXX_FLAGS "@CMAKE_CXX_FLAGS@")
|
||||
|
||||
@@ -30,12 +30,6 @@
|
||||
#define MFEM_VERSION_MINOR (((MFEM_VERSION)/100)%100)
|
||||
#define MFEM_VERSION_PATCH ((MFEM_VERSION)%100)
|
||||
|
||||
// MFEM source directory.
|
||||
#define MFEM_SOURCE_DIR "@MFEM_SOURCE_DIR@"
|
||||
|
||||
// MFEM install directory.
|
||||
#define MFEM_INSTALL_DIR "@MFEM_INSTALL_DIR@"
|
||||
|
||||
// Description of the git commit used to build MFEM.
|
||||
#cmakedefine MFEM_GIT_STRING "@MFEM_GIT_STRING@"
|
||||
|
||||
@@ -68,12 +62,9 @@
|
||||
// allocation and de-allocation.
|
||||
#cmakedefine MFEM_THREAD_SAFE
|
||||
|
||||
// Enable the OpenMP backend.
|
||||
// Enable experimental OpenMP support. Requires MFEM_THREAD_SAFE.
|
||||
#cmakedefine MFEM_USE_OPENMP
|
||||
|
||||
// [Deprecated] Enable experimental OpenMP support. Requires MFEM_THREAD_SAFE.
|
||||
#cmakedefine MFEM_USE_LEGACY_OPENMP
|
||||
|
||||
// Enable MFEM functionality based on the Mesquite library.
|
||||
#cmakedefine MFEM_USE_MESQUITE
|
||||
|
||||
@@ -107,22 +98,6 @@
|
||||
// Enable MFEM functionality based on Conduit
|
||||
#cmakedefine MFEM_USE_CONDUIT
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
#cmakedefine MFEM_USE_PUMI
|
||||
|
||||
// Build the GPU/CUDA-enabled version of the MFEM library.
|
||||
// Requires a CUDA compiler (nvcc).
|
||||
#cmakedefine MFEM_USE_CUDA
|
||||
|
||||
// Enable MFEM functionality based on the RAJA library
|
||||
#cmakedefine MFEM_USE_RAJA
|
||||
|
||||
// Enable MFEM functionality based on the OCCA library
|
||||
#cmakedefine MFEM_USE_OCCA
|
||||
|
||||
// Enable MFEM's internal Memory Manager (needed e.g. for MFEM_USE_CUDA)
|
||||
#cmakedefine MFEM_USE_MM
|
||||
|
||||
// Which library functions to use in class StopWatch for measuring time.
|
||||
// For a list of the available options, see INSTALL.
|
||||
// If not defined, an option is selected automatically.
|
||||
@@ -131,11 +106,11 @@
|
||||
// Enable MFEM functionality based on the SUNDIALS libraries.
|
||||
#cmakedefine MFEM_USE_SUNDIALS
|
||||
|
||||
// Windows specific options
|
||||
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
|
||||
#cmakedefine _USE_MATH_DEFINES
|
||||
|
||||
// Version of HYPRE used for building MFEM.
|
||||
#cmakedefine MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
|
||||
|
||||
// Macro defined when PUMI is built with support for the Simmetrix SimModSuite
|
||||
// library.
|
||||
#cmakedefine MFEM_USE_SIMMETRIX
|
||||
|
||||
#endif // MFEM_CONFIG_HEADER
|
||||
|
||||
@@ -1,19 +0,0 @@
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Defines the following variables:
|
||||
# - OCCA_FOUND
|
||||
# - OCCA_LIBRARIES
|
||||
# - OCCA_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(OCCA OCCA OCCA_DIR "include" "occa.hpp" "lib" "occa"
|
||||
"Paths to headers required by OCCA." "Libraries required by OCCA.")
|
||||
@@ -1,30 +0,0 @@
|
||||
# Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at the
|
||||
# Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights reserved.
|
||||
# See file COPYRIGHT for details.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability see http://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the GNU Lesser General Public License (as published by the Free
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Defines the following variables:
|
||||
# - RAJA_FOUND
|
||||
# - RAJA_LIBRARIES
|
||||
# - RAJA_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(RAJA RAJA RAJA_DIR "include" "RAJA/RAJA.hpp" "lib" "RAJA"
|
||||
"Paths to headers required by RAJA." "Libraries required by RAJA.")
|
||||
|
||||
if (NOT RAJA_CONFIG_CMAKE)
|
||||
set(RAJA_CONFIG_CMAKE "${RAJA_DIR}/share/raja/cmake/raja-config.cmake")
|
||||
endif()
|
||||
if (EXISTS "${RAJA_CONFIG_CMAKE}")
|
||||
include("${RAJA_CONFIG_CMAKE}")
|
||||
if (ENABLE_CUDA AND NOT MFEM_USE_CUDA)
|
||||
message(FATAL_ERROR
|
||||
"RAJA is built with CUDA: MFEM_USE_CUDA=YES is required")
|
||||
endif()
|
||||
endif()
|
||||
@@ -229,17 +229,6 @@ endfunction(mfem_find_component)
|
||||
function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
Lib IncDoc LibDoc)
|
||||
|
||||
# If we have the TPL_ versions of _INCLUDE_DIRS and _LIBRARIES then set the
|
||||
# standard ${Prefix} versions
|
||||
if (TPL_${Prefix}_INCLUDE_DIRS)
|
||||
set(${Prefix}_INCLUDE_DIRS ${TPL_${Prefix}_INCLUDE_DIRS} CACHE STRING
|
||||
"TPL_${Prefix}_INCLUDE_DIRS was found." FORCE)
|
||||
endif()
|
||||
if (TPL_${Prefix}_LIBRARIES)
|
||||
set(${Prefix}_LIBRARIES ${TPL_${Prefix}_LIBRARIES} CACHE STRING
|
||||
"TPL_${Prefix}_LIBRARIES was found." FORCE)
|
||||
endif()
|
||||
|
||||
# Quick return
|
||||
if (${Prefix}_FOUND)
|
||||
return()
|
||||
@@ -696,164 +685,3 @@ function(mfem_find_library Name Prefix Lib LibDoc CheckVar CheckSrc)
|
||||
endif()
|
||||
|
||||
endfunction(mfem_find_library)
|
||||
|
||||
|
||||
#
|
||||
# Function that creates 'config.mk' from 'config.mk.in' for the both the
|
||||
# build- and the install-locations and define install rules for 'config.mk'
|
||||
# and 'test.mk'.
|
||||
#
|
||||
function(mfem_export_mk_files)
|
||||
|
||||
# Define a few auxiliary variables (not written to 'config.mk')
|
||||
string(TOUPPER "${CMAKE_BUILD_TYPE}" BUILD_TYPE)
|
||||
# CMAKE_SHARED_LIBRARY_RUNTIME_C_FLAG -> '-Wl,-rpath,'
|
||||
set(shared_link_flag ${CMAKE_SHARED_LIBRARY_RUNTIME_C_FLAG})
|
||||
if (NOT shared_link_flag)
|
||||
set(shared_link_flag "-Wl,-rpath,")
|
||||
endif()
|
||||
|
||||
# Convert Boolean vars to YES/NO without writting the values to cache
|
||||
set(CONFIG_MK_BOOL_VARS MFEM_USE_MPI MFEM_USE_METIS MFEM_USE_METIS_5
|
||||
MFEM_DEBUG MFEM_USE_EXCEPTIONS MFEM_USE_GZSTREAM MFEM_USE_LIBUNWIND
|
||||
MFEM_USE_LAPACK MFEM_THREAD_SAFE MFEM_USE_OPENMP MFEM_USE_LEGACY_OPENMP
|
||||
MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_MESQUITE MFEM_USE_SUITESPARSE
|
||||
MFEM_USE_SUPERLU MFEM_USE_STRUMPACK MFEM_USE_GECKO MFEM_USE_GNUTLS
|
||||
MFEM_USE_NETCDF MFEM_USE_PETSC MFEM_USE_MPFR MFEM_USE_SIDRE
|
||||
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_MM MFEM_USE_CUDA MFEM_USE_OCCA
|
||||
MFEM_USE_RAJA)
|
||||
foreach(var ${CONFIG_MK_BOOL_VARS})
|
||||
if (${var})
|
||||
set(${var} YES)
|
||||
else()
|
||||
set(${var} NO)
|
||||
endif()
|
||||
endforeach()
|
||||
# TODO: Add support for MFEM_USE_CUDA=YES
|
||||
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
|
||||
set(MFEM_CPPFLAGS "")
|
||||
string(STRIP "${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
|
||||
MFEM_CXXFLAGS)
|
||||
set(MFEM_TPLFLAGS "")
|
||||
foreach(dir ${MFEM_TPL_INCLUDE_DIRS})
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
|
||||
endforeach()
|
||||
# TODO: MFEM_TPLFLAGS: add other TPL flags, in addition to the -I flags.
|
||||
set(MFEM_INCFLAGS "-I\$(MFEM_INC_DIR) \$(MFEM_TPLFLAGS)")
|
||||
set(MFEM_PICFLAG "")
|
||||
if (BUILD_SHARED_LIBS)
|
||||
set(MFEM_PICFLAG "${CMAKE_SHARED_LIBRARY_CXX_FLAGS}")
|
||||
endif()
|
||||
set(MFEM_FLAGS "\$(MFEM_CPPFLAGS) \$(MFEM_CXXFLAGS) \$(MFEM_INCFLAGS)")
|
||||
# TPL link flags: set below
|
||||
set(MFEM_EXT_LIBS "")
|
||||
if (BUILD_SHARED_LIBS)
|
||||
set(MFEM_LIBS "${shared_link_flag}\$(MFEM_LIB_DIR) -L\$(MFEM_LIB_DIR)")
|
||||
set(MFEM_LIBS "${MFEM_LIBS} -lmfem \$(MFEM_EXT_LIBS)")
|
||||
if (APPLE)
|
||||
set(SO_VER ".${mfem_VERSION}${CMAKE_SHARED_LIBRARY_SUFFIX}")
|
||||
else()
|
||||
set(SO_VER "${CMAKE_SHARED_LIBRARY_SUFFIX}.${mfem_VERSION}")
|
||||
endif()
|
||||
set(MFEM_LIB_FILE "\$(MFEM_LIB_DIR)/libmfem${SO_VER}")
|
||||
set(MFEM_SHARED YES)
|
||||
set(MFEM_STATIC NO)
|
||||
else()
|
||||
set(MFEM_LIBS "-L\$(MFEM_LIB_DIR) -lmfem \$(MFEM_EXT_LIBS)")
|
||||
set(MFEM_LIB_FILE "\$(MFEM_LIB_DIR)/libmfem.a")
|
||||
set(MFEM_SHARED NO)
|
||||
set(MFEM_STATIC YES)
|
||||
endif()
|
||||
set(MFEM_BUILD_TAG "${CMAKE_SYSTEM}")
|
||||
set(MFEM_PREFIX "${CMAKE_INSTALL_PREFIX}")
|
||||
# For the next 4 variable, these are the values for the build-tree version of
|
||||
# 'config.mk'
|
||||
set(MFEM_INC_DIR "${PROJECT_BINARY_DIR}")
|
||||
set(MFEM_LIB_DIR "${PROJECT_BINARY_DIR}")
|
||||
set(MFEM_TEST_MK "${PROJECT_SOURCE_DIR}/config/test.mk")
|
||||
set(MFEM_CONFIG_EXTRA "MFEM_BUILD_DIR ?= ${PROJECT_BINARY_DIR}")
|
||||
set(MFEM_MPIEXEC ${MPIEXEC})
|
||||
if (NOT MFEM_MPIEXEC)
|
||||
set(MFEM_MPIEXEC "mpirun")
|
||||
endif()
|
||||
set(MFEM_MPIEXEC_NP ${MPIEXEC_NUMPROC_FLAG})
|
||||
if (NOT MFEM_MPIEXEC_NP)
|
||||
set(MFEM_MPIEXEC_NP "-np")
|
||||
endif()
|
||||
# MFEM_MPI_NP is already set
|
||||
# Define the variable 'MFEM_EXT_LIBS': handle PUMI libs
|
||||
if ("${MFEM_USE_PUMI}" STREQUAL "YES")
|
||||
message(STATUS "simmodsuite_dir = '${SIMMODSUITE_DIR}'")
|
||||
get_target_property(liblist ${PUMI_LIBRARIES} INTERFACE_LINK_LIBRARIES)
|
||||
set(pumi_dep_libs "${liblist}")
|
||||
foreach(pumilib ${liblist})
|
||||
get_target_property(libdeps ${pumilib} INTERFACE_LINK_LIBRARIES)
|
||||
if (NOT "${libdeps}" MATCHES "libdeps-NOTFOUND")
|
||||
list(APPEND pumi_dep_libs ${libdeps})
|
||||
endif()
|
||||
endforeach()
|
||||
list(REMOVE_DUPLICATES pumi_dep_libs)
|
||||
foreach(pumilib ${pumi_dep_libs})
|
||||
unset(lib CACHE)
|
||||
string(REGEX REPLACE "^SCOREC::" "" libname ${pumilib})
|
||||
string(FIND "${pumilib}" ".a" staticlib)
|
||||
string(FIND "${pumilib}" ".so" sharedlib)
|
||||
find_library(lib ${libname} PATHS ${PUMI_DIR}/lib NO_DEFUALT_PATH)
|
||||
if (NOT "${sharedlib}" MATCHES "-1" OR
|
||||
NOT "${staticlib}" MATCHES "-1" )
|
||||
set(MFEM_EXT_LIBS "${pumilib} ${MFEM_EXT_LIBS}")
|
||||
elseif (NOT "${lib}" MATCHES "lib-NOTFOUND")
|
||||
set(MFEM_EXT_LIBS "${lib} ${MFEM_EXT_LIBS}")
|
||||
elseif ("${lib}" MATCHES "lib-NOTFOUND" AND
|
||||
NOT "${libname}" MATCHES "can" AND
|
||||
NOT "${libname}" MATCHES "pthread")
|
||||
message(FATAL_ERROR "SCOREC lib ${libname} not found")
|
||||
endif()
|
||||
endforeach()
|
||||
endif()
|
||||
# Define the variable 'MFEM_EXT_LIBS': handle other (not PUMI) libs
|
||||
foreach(lib ${TPL_LIBRARIES})
|
||||
get_filename_component(suffix ${lib} EXT)
|
||||
# handle interfaces (e.g., SCOREC::apf)
|
||||
if ("${lib}" MATCHES "SCOREC::.*")
|
||||
elseif (NOT "${lib}" MATCHES "SCOREC::.*" AND "${lib}" MATCHES ".*::.*")
|
||||
message(FATAL_ERROR "***** interface lib found ... exiting *****")
|
||||
# handle static and shared libs
|
||||
elseif ("${suffix}" STREQUAL "${CMAKE_SHARED_LIBRARY_SUFFIX}")
|
||||
get_filename_component(dir ${lib} DIRECTORY)
|
||||
get_filename_component(fullLibName ${lib} NAME_WE)
|
||||
string(REGEX REPLACE "^lib" "" libname ${fullLibName})
|
||||
set(MFEM_EXT_LIBS
|
||||
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
|
||||
else()
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${lib}")
|
||||
endif()
|
||||
endforeach()
|
||||
|
||||
# Create the build-tree version of 'config.mk'
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
|
||||
"${PROJECT_BINARY_DIR}/config/config.mk")
|
||||
# Copy 'test.mk' from the source-tree to the build-tree
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/test.mk"
|
||||
"${PROJECT_BINARY_DIR}/config/test.mk" COPYONLY)
|
||||
|
||||
# Update variables for the install-tree version of 'config.mk'
|
||||
set(MFEM_INC_DIR "${CMAKE_INSTALL_PREFIX}/include")
|
||||
set(MFEM_LIB_DIR "${CMAKE_INSTALL_PREFIX}/lib")
|
||||
set(MFEM_TEST_MK "${CMAKE_INSTALL_PREFIX}/share/mfem/test.mk")
|
||||
set(MFEM_CONFIG_EXTRA "")
|
||||
|
||||
# Create the install-tree version of 'config.mk'
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
|
||||
"${PROJECT_BINARY_DIR}/config/config-install.mk")
|
||||
|
||||
# Install rules for 'config.mk' and 'test.mk'
|
||||
install(FILES ${PROJECT_SOURCE_DIR}/config/test.mk
|
||||
DESTINATION ${CMAKE_INSTALL_PREFIX}/share/mfem/)
|
||||
install(FILES ${PROJECT_BINARY_DIR}/config/config-install.mk
|
||||
DESTINATION ${CMAKE_INSTALL_PREFIX}/share/mfem/ RENAME config.mk)
|
||||
|
||||
endfunction()
|
||||
|
||||
+6
-23
@@ -15,9 +15,6 @@
|
||||
//
|
||||
// Otherwise, use the local file: _config.hpp.
|
||||
|
||||
#ifndef MFEM_CONFIG_HPP
|
||||
#define MFEM_CONFIG_HPP
|
||||
|
||||
#ifdef MFEM_BUILD_DIR
|
||||
#define MFEM_QUOTE(a) #a
|
||||
#define MFEM_MAKE_PATH(x,y) MFEM_QUOTE(x/y)
|
||||
@@ -26,18 +23,6 @@
|
||||
#include "_config.hpp"
|
||||
#endif
|
||||
|
||||
// Common configuration macros
|
||||
|
||||
#if (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 7)) || defined(__clang__)
|
||||
#define MFEM_HAVE_GCC_PRAGMA_DIAGNOSTIC
|
||||
#endif
|
||||
|
||||
// Windows specific options
|
||||
#ifdef _WIN32
|
||||
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
|
||||
#define _USE_MATH_DEFINES
|
||||
#endif
|
||||
|
||||
// Check dependencies:
|
||||
|
||||
// Options that require MPI
|
||||
@@ -51,14 +36,12 @@
|
||||
#ifdef MFEM_USE_PETSC
|
||||
#error Building with PETSc (MFEM_USE_PETSC=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#ifdef MFEM_USE_PUMI
|
||||
#error Building with PUMI (MFEM_USE_PUMI=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#endif // MFEM_USE_MPI not defined
|
||||
|
||||
// CUDA requires the memory manager
|
||||
#if defined(MFEM_USE_CUDA) && !defined(MFEM_USE_MM)
|
||||
#error Building with CUDA (MFEM_USE_CUDA=YES) requires MFEM_USE_MM=YES
|
||||
// Macro that returns its first arg when MFEM_USE_BACKENDS is defined, and its
|
||||
// second arg if it is not defined.
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
#define MFEM_IF_BACKENDS(x,y) (x)
|
||||
#else
|
||||
#define MFEM_IF_BACKENDS(x,y) (y)
|
||||
#endif
|
||||
|
||||
#endif // MFEM_CONFIG_HPP
|
||||
|
||||
+21
-23
@@ -30,15 +30,15 @@
|
||||
#define MFEM_VERSION_MINOR (((MFEM_VERSION)/100)%100)
|
||||
#define MFEM_VERSION_PATCH ((MFEM_VERSION)%100)
|
||||
|
||||
// Description of the git commit used to build MFEM.
|
||||
// #define MFEM_GIT_STRING "@MFEM_GIT_STRING@"
|
||||
|
||||
// The absolute path of the MFEM source prefix
|
||||
// #define MFEM_SOURCE_DIR "@MFEM_SOURCE_DIR@"
|
||||
|
||||
// The absolute path of the MFEM installation prefix
|
||||
// #define MFEM_INSTALL_DIR "@MFEM_INSTALL_DIR@"
|
||||
|
||||
// Description of the git commit used to build MFEM.
|
||||
// #define MFEM_GIT_STRING "@MFEM_GIT_STRING@"
|
||||
|
||||
// Build the parallel MFEM library.
|
||||
// Requires an MPI compiler, and the libraries HYPRE and METIS.
|
||||
// #define MFEM_USE_MPI
|
||||
@@ -68,12 +68,9 @@
|
||||
// allocation and de-allocation.
|
||||
// #define MFEM_THREAD_SAFE
|
||||
|
||||
// Enable the OpenMP backend.
|
||||
// Enable experimental OpenMP support. Requires MFEM_THREAD_SAFE.
|
||||
// #define MFEM_USE_OPENMP
|
||||
|
||||
// [Deprecated] Enable experimental OpenMP support. Requires MFEM_THREAD_SAFE.
|
||||
// #define MFEM_USE_LEGACY_OPENMP
|
||||
|
||||
// Internal MFEM option: enable group/batch allocation for some small objects.
|
||||
// #define MFEM_USE_MEMALLOC
|
||||
|
||||
@@ -118,27 +115,28 @@
|
||||
// Enable functionality based on the MPFR library.
|
||||
// #define MFEM_USE_MPFR
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
// #define MFEM_USE_PUMI
|
||||
// Enable the use of MFEM backends.
|
||||
// #define MFEM_USE_BACKENDS
|
||||
|
||||
// Build the GPU/CUDA-enabled version of the MFEM library.
|
||||
// Requires a CUDA compiler (nvcc).
|
||||
// #define MFEM_USE_CUDA
|
||||
|
||||
// Enable functionality based on the RAJA library.
|
||||
// #define MFEM_USE_RAJA
|
||||
|
||||
// Enable functionality based on the OCCA library.
|
||||
// Enable the OCCA backend.
|
||||
// #define MFEM_USE_OCCA
|
||||
|
||||
// Enable MFEM's internal Memory Manager (needed e.g. for MFEM_USE_CUDA)
|
||||
// #define MFEM_USE_MM
|
||||
// Enable the OMP backend.
|
||||
// #define MFEM_USE_OMP
|
||||
|
||||
// Enable use of acrotensor in backends.
|
||||
// #define MFEM_USE_ACROTENSOR
|
||||
|
||||
// Enable use of unified memory.
|
||||
// #define MFEM_USE_CUDAUM
|
||||
|
||||
// Windows specific options
|
||||
#ifdef _WIN32
|
||||
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
|
||||
#define _USE_MATH_DEFINES
|
||||
#endif
|
||||
|
||||
// Version of HYPRE used for building MFEM.
|
||||
// #define MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
|
||||
|
||||
// Macro defined when PUMI is built with support for the Simmetrix SimModSuite
|
||||
// library.
|
||||
// #define MFEM_USE_SIMMETRIX
|
||||
|
||||
#endif // MFEM_CONFIG_HEADER
|
||||
|
||||
+34
-38
@@ -10,41 +10,40 @@
|
||||
# Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
# Variables corresponding to defines in config.hpp (YES, NO, or value)
|
||||
MFEM_VERSION = @MFEM_VERSION@
|
||||
MFEM_VERSION_STRING = @MFEM_VERSION_STRING@
|
||||
MFEM_SOURCE_DIR = @MFEM_SOURCE_DIR@
|
||||
MFEM_INSTALL_DIR = @MFEM_INSTALL_DIR@
|
||||
MFEM_GIT_STRING = @MFEM_GIT_STRING@
|
||||
MFEM_USE_MPI = @MFEM_USE_MPI@
|
||||
MFEM_USE_METIS = @MFEM_USE_METIS@
|
||||
MFEM_USE_METIS_5 = @MFEM_USE_METIS_5@
|
||||
MFEM_DEBUG = @MFEM_DEBUG@
|
||||
MFEM_USE_EXCEPTIONS = @MFEM_USE_EXCEPTIONS@
|
||||
MFEM_USE_GZSTREAM = @MFEM_USE_GZSTREAM@
|
||||
MFEM_USE_LIBUNWIND = @MFEM_USE_LIBUNWIND@
|
||||
MFEM_USE_LAPACK = @MFEM_USE_LAPACK@
|
||||
MFEM_THREAD_SAFE = @MFEM_THREAD_SAFE@
|
||||
MFEM_USE_LEGACY_OPENMP = @MFEM_USE_LEGACY_OPENMP@
|
||||
MFEM_USE_OPENMP = @MFEM_USE_OPENMP@
|
||||
MFEM_USE_MEMALLOC = @MFEM_USE_MEMALLOC@
|
||||
MFEM_TIMER_TYPE = @MFEM_TIMER_TYPE@
|
||||
MFEM_USE_SUNDIALS = @MFEM_USE_SUNDIALS@
|
||||
MFEM_USE_MESQUITE = @MFEM_USE_MESQUITE@
|
||||
MFEM_USE_SUITESPARSE = @MFEM_USE_SUITESPARSE@
|
||||
MFEM_USE_SUPERLU = @MFEM_USE_SUPERLU@
|
||||
MFEM_USE_STRUMPACK = @MFEM_USE_STRUMPACK@
|
||||
MFEM_USE_GECKO = @MFEM_USE_GECKO@
|
||||
MFEM_USE_GNUTLS = @MFEM_USE_GNUTLS@
|
||||
MFEM_USE_NETCDF = @MFEM_USE_NETCDF@
|
||||
MFEM_USE_PETSC = @MFEM_USE_PETSC@
|
||||
MFEM_USE_MPFR = @MFEM_USE_MPFR@
|
||||
MFEM_USE_SIDRE = @MFEM_USE_SIDRE@
|
||||
MFEM_USE_CONDUIT = @MFEM_USE_CONDUIT@
|
||||
MFEM_USE_PUMI = @MFEM_USE_PUMI@
|
||||
MFEM_USE_CUDA = @MFEM_USE_CUDA@
|
||||
MFEM_USE_RAJA = @MFEM_USE_RAJA@
|
||||
MFEM_USE_OCCA = @MFEM_USE_OCCA@
|
||||
MFEM_USE_MM = @MFEM_USE_MM@
|
||||
MFEM_VERSION = @MFEM_VERSION@
|
||||
MFEM_VERSION_STRING = @MFEM_VERSION_STRING@
|
||||
MFEM_GIT_STRING = @MFEM_GIT_STRING@
|
||||
MFEM_SOURCE_DIR = @MFEM_SOURCE_DIR@
|
||||
MFEM_INSTALL_DIR = @MFEM_INSTALL_DIR@
|
||||
MFEM_USE_MPI = @MFEM_USE_MPI@
|
||||
MFEM_USE_METIS = @MFEM_USE_METIS@
|
||||
MFEM_USE_METIS_5 = @MFEM_USE_METIS_5@
|
||||
MFEM_DEBUG = @MFEM_DEBUG@
|
||||
MFEM_USE_EXCEPTIONS = @MFEM_USE_EXCEPTIONS@
|
||||
MFEM_USE_GZSTREAM = @MFEM_USE_GZSTREAM@
|
||||
MFEM_USE_LIBUNWIND = @MFEM_USE_LIBUNWIND@
|
||||
MFEM_USE_LAPACK = @MFEM_USE_LAPACK@
|
||||
MFEM_THREAD_SAFE = @MFEM_THREAD_SAFE@
|
||||
MFEM_USE_OPENMP = @MFEM_USE_OPENMP@
|
||||
MFEM_USE_MEMALLOC = @MFEM_USE_MEMALLOC@
|
||||
MFEM_TIMER_TYPE = @MFEM_TIMER_TYPE@
|
||||
MFEM_USE_SUNDIALS = @MFEM_USE_SUNDIALS@
|
||||
MFEM_USE_MESQUITE = @MFEM_USE_MESQUITE@
|
||||
MFEM_USE_SUITESPARSE = @MFEM_USE_SUITESPARSE@
|
||||
MFEM_USE_SUPERLU = @MFEM_USE_SUPERLU@
|
||||
MFEM_USE_STRUMPACK = @MFEM_USE_STRUMPACK@
|
||||
MFEM_USE_GECKO = @MFEM_USE_GECKO@
|
||||
MFEM_USE_GNUTLS = @MFEM_USE_GNUTLS@
|
||||
MFEM_USE_NETCDF = @MFEM_USE_NETCDF@
|
||||
MFEM_USE_PETSC = @MFEM_USE_PETSC@
|
||||
MFEM_USE_MPFR = @MFEM_USE_MPFR@
|
||||
MFEM_USE_SIDRE = @MFEM_USE_SIDRE@
|
||||
MFEM_USE_CONDUIT = @MFEM_USE_CONDUIT@
|
||||
MFEM_USE_BACKENDS = @MFEM_USE_BACKENDS@
|
||||
MFEM_USE_OCCA = @MFEM_USE_OCCA@
|
||||
MFEM_USE_OMP = @MFEM_USE_OMP@
|
||||
MFEM_USE_ACROTENSOR = @MFEM_USE_ACROTENSOR@
|
||||
MFEM_USE_CUDAUM = @MFEM_USE_CUDAUM@
|
||||
|
||||
# Compiler, compile options, and link options
|
||||
MFEM_CXX = @MFEM_CXX@
|
||||
@@ -72,8 +71,5 @@ MFEM_MPIEXEC = @MFEM_MPIEXEC@
|
||||
MFEM_MPIEXEC_NP = @MFEM_MPIEXEC_NP@
|
||||
MFEM_MPI_NP = @MFEM_MPI_NP@
|
||||
|
||||
# The NVCC compiler cannot link with -x=cu
|
||||
MFEM_LINK_FLAGS := $(filter-out -x=cu, $(MFEM_FLAGS))
|
||||
|
||||
# Optional extra configuration
|
||||
@MFEM_CONFIG_EXTRA@
|
||||
|
||||
+3
-22
@@ -26,8 +26,7 @@ option(MFEM_USE_GZSTREAM "Enable gzstream for compressed data streams." OFF)
|
||||
option(MFEM_USE_LIBUNWIND "Enable backtrace for errors." OFF)
|
||||
option(MFEM_USE_LAPACK "Enable LAPACK usage" OFF)
|
||||
option(MFEM_THREAD_SAFE "Enable thread safety" OFF)
|
||||
option(MFEM_USE_OPENMP "Enable the OpenMP backend" OFF)
|
||||
option(MFEM_USE_LEGACY_OPENMP "Enable legacy OpenMP usage" OFF)
|
||||
option(MFEM_USE_OPENMP "Enable OpenMP usage" OFF)
|
||||
option(MFEM_USE_MEMALLOC "Enable the internal MEMALLOC option." ON)
|
||||
option(MFEM_USE_SUNDIALS "Enable SUNDIALS usage" OFF)
|
||||
option(MFEM_USE_MESQUITE "Enable MESQUITE usage" OFF)
|
||||
@@ -41,13 +40,6 @@ option(MFEM_USE_PETSC "Enable PETSc support." OFF)
|
||||
option(MFEM_USE_MPFR "Enable MPFR usage." OFF)
|
||||
option(MFEM_USE_SIDRE "Enable Axom/Sidre usage" OFF)
|
||||
option(MFEM_USE_CONDUIT "Enable Conduit usage" OFF)
|
||||
option(MFEM_USE_PUMI "Enable PUMI" OFF)
|
||||
option(MFEM_USE_MM "Enable MFEM's memory manager" OFF)
|
||||
option(MFEM_USE_CUDA "Enable CUDA" OFF)
|
||||
option(MFEM_USE_OCCA "Enable OCCA" OFF)
|
||||
option(MFEM_USE_RAJA "Enable RAJA" OFF)
|
||||
|
||||
set(MFEM_MPI_NP 4 CACHE STRING "Number of processes used for MPI tests")
|
||||
|
||||
# Allow a user to disable testing, examples, and/or miniapps at CONFIGURE TIME
|
||||
# if they don't want/need them (e.g. if MFEM is "just a dependency" and all they
|
||||
@@ -63,16 +55,13 @@ option(MFEM_ENABLE_MINIAPPS "Build all of the miniapps" OFF)
|
||||
# set(CXX g++)
|
||||
# set(MPICXX mpicxx)
|
||||
|
||||
# Set the target CUDA architecture
|
||||
set(CUDA_ARCH "sm_60" CACHE STRING "Target CUDA architecture.")
|
||||
|
||||
set(MFEM_DIR ${CMAKE_CURRENT_SOURCE_DIR})
|
||||
|
||||
# The *_DIR paths below will be the first place searched for the corresponding
|
||||
# headers and library. If these fail, then standard cmake search is performed.
|
||||
# Note: if the variables are already in the cache, they are not overwritten.
|
||||
|
||||
set(HYPRE_DIR "${MFEM_DIR}/../hypre/src/hypre" CACHE PATH
|
||||
set(HYPRE_DIR "${MFEM_DIR}/../hypre-2.10.0b/src/hypre" CACHE PATH
|
||||
"Path to the hypre library.")
|
||||
# If hypre was compiled to depend on BLAS and LAPACK:
|
||||
# set(HYPRE_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
|
||||
@@ -110,7 +99,6 @@ set(SuperLUDist_REQUIRED_PACKAGES "MPI" "BLAS" "ParMETIS" CACHE STRING
|
||||
set(STRUMPACK_DIR "${MFEM_DIR}/../STRUMPACK-build" CACHE PATH
|
||||
"Path to the STRUMPACK library.")
|
||||
# STRUMPACK may also depend on "OpenMP", depending on how it was compiled.
|
||||
# Starting with v2.2.0 of STRUMPACK, ParMETIS and Scotch are optional.
|
||||
set(STRUMPACK_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
|
||||
"ScaLAPACK" "Scotch/ptscotch/ptscotcherr/scotch/scotcherr" CACHE STRING
|
||||
"Additional packages required by STRUMPACK.")
|
||||
@@ -118,8 +106,7 @@ set(STRUMPACK_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
|
||||
# set(STRUMPACK_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
|
||||
# "Additional libraries required by STRUMPACK.")
|
||||
|
||||
# The Scotch library, required by STRUMPACK <= v2.1.0, optional in STRUMPACK >=
|
||||
# v2.2.0.
|
||||
# The Scotch library, required by STRUMPACK
|
||||
set(Scotch_DIR "${MFEM_DIR}/../scotch_6.0.4" CACHE PATH
|
||||
"Path to the Scotch and PT-Scotch libraries.")
|
||||
set(Scotch_REQUIRED_PACKAGES "Threads" CACHE STRING
|
||||
@@ -158,12 +145,6 @@ set(AXOM_DIR "${MFEM_DIR}/../axom" CACHE PATH "Path to the Axom library.")
|
||||
set(Axom_REQUIRED_PACKAGES "Conduit/relay" CACHE STRING
|
||||
"Additional packages required by Axom.")
|
||||
|
||||
set(PUMI_DIR "${MFEM_DIR}/../pumi-2.1.0" CACHE STRING
|
||||
"Directory where PUMI is installed")
|
||||
|
||||
set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
|
||||
set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
|
||||
|
||||
set(BLAS_INCLUDE_DIRS "" CACHE STRING "Path to BLAS headers.")
|
||||
set(BLAS_LIBRARIES "" CACHE STRING "The BLAS library.")
|
||||
set(LAPACK_INCLUDE_DIRS "" CACHE STRING "Path to LAPACK headers.")
|
||||
|
||||
+64
-78
@@ -21,13 +21,8 @@ NOTMAC := $(subst Darwin,,$(shell uname -s))
|
||||
CXX = g++
|
||||
MPICXX = mpicxx
|
||||
|
||||
BASE_FLAGS = -std=c++11
|
||||
OPTIM_FLAGS = -O3 $(BASE_FLAGS)
|
||||
DEBUG_FLAGS = -g $(XCOMPILER)-Wall $(BASE_FLAGS)
|
||||
|
||||
# Prefixes for passing flags to the compiler and linker when using CXX or MPICXX
|
||||
CXX_XCOMPILER =
|
||||
CXX_XLINKER = -Wl,
|
||||
OPTIM_FLAGS = -O3
|
||||
DEBUG_FLAGS = -g -Wall
|
||||
|
||||
# Destination location of make install
|
||||
# PREFIX = $(HOME)/mfem
|
||||
@@ -38,41 +33,33 @@ INSTALL = /usr/bin/install
|
||||
STATIC = YES
|
||||
SHARED = NO
|
||||
|
||||
# CUDA configuration options
|
||||
CUDA_CXX = nvcc
|
||||
CUDA_ARCH = sm_60
|
||||
CUDA_FLAGS = -x=cu --expt-extended-lambda -arch=$(CUDA_ARCH)
|
||||
# Prefixes for passing flags to the host compiler and linker when using CUDA_CXX
|
||||
CUDA_XCOMPILER = -Xcompiler=
|
||||
CUDA_XLINKER = -Xlinker=
|
||||
|
||||
ifneq ($(NOTMAC),)
|
||||
AR = ar
|
||||
ARFLAGS = cruv
|
||||
RANLIB = ranlib
|
||||
PICFLAG = $(XCOMPILER)-fPIC
|
||||
PICFLAG = -fPIC
|
||||
SO_EXT = so
|
||||
SO_VER = so.$(MFEM_VERSION_STRING)
|
||||
BUILD_SOFLAGS = -shared $(XLINKER)-soname,libmfem.$(SO_VER)
|
||||
BUILD_RPATH = $(XLINKER)-rpath,$(BUILD_REAL_DIR)
|
||||
BUILD_SOFLAGS = -shared -Wl,-soname,libmfem.$(SO_VER)
|
||||
BUILD_RPATH = -Wl,-rpath,$(BUILD_REAL_DIR)
|
||||
INSTALL_SOFLAGS = $(BUILD_SOFLAGS)
|
||||
INSTALL_RPATH = $(XLINKER)-rpath,@MFEM_LIB_DIR@
|
||||
INSTALL_RPATH = -Wl,-rpath,@MFEM_LIB_DIR@
|
||||
else
|
||||
# Silence "has no symbols" warnings on Mac OS X
|
||||
AR = ar
|
||||
ARFLAGS = Scruv
|
||||
RANLIB = ranlib -no_warning_for_no_symbols
|
||||
PICFLAG = $(XCOMPILER)-fPIC
|
||||
PICFLAG = -fPIC
|
||||
SO_EXT = dylib
|
||||
SO_VER = $(MFEM_VERSION_STRING).dylib
|
||||
MAKE_SOFLAGS = $(XLINKER)-dylib,-install_name,$(1)/libmfem.$(SO_VER),\
|
||||
MAKE_SOFLAGS = -Wl,-dylib,-install_name,$(1)/libmfem.$(SO_VER),\
|
||||
-compatibility_version,$(MFEM_VERSION_STRING),\
|
||||
-current_version,$(MFEM_VERSION_STRING),\
|
||||
-undefined,dynamic_lookup
|
||||
BUILD_SOFLAGS = $(subst $1 ,,$(call MAKE_SOFLAGS,$(BUILD_REAL_DIR)))
|
||||
BUILD_RPATH = $(XLINKER)-undefined,dynamic_lookup
|
||||
BUILD_RPATH = -Wl,-undefined,dynamic_lookup
|
||||
INSTALL_SOFLAGS = $(subst $1 ,,$(call MAKE_SOFLAGS,$(MFEM_LIB_DIR)))
|
||||
INSTALL_RPATH = $(XLINKER)-undefined,dynamic_lookup
|
||||
INSTALL_RPATH = -Wl,-undefined,dynamic_lookup
|
||||
endif
|
||||
|
||||
# Set CXXFLAGS to overwrite the default selection of DEBUG_FLAGS/OPTIM_FLAGS
|
||||
@@ -95,36 +82,37 @@ MFEM_MPI_NP = 4
|
||||
# config.hpp. The values below are the defaults for generating the actual values
|
||||
# in config.mk and config.hpp.
|
||||
|
||||
MFEM_USE_MPI = NO
|
||||
MFEM_USE_METIS = $(MFEM_USE_MPI)
|
||||
MFEM_USE_METIS_5 = NO
|
||||
MFEM_DEBUG = NO
|
||||
MFEM_USE_EXCEPTIONS = NO
|
||||
MFEM_USE_GZSTREAM = NO
|
||||
MFEM_USE_LIBUNWIND = NO
|
||||
MFEM_USE_LAPACK = NO
|
||||
MFEM_THREAD_SAFE = NO
|
||||
MFEM_USE_OPENMP = NO
|
||||
MFEM_USE_LEGACY_OPENMP = NO
|
||||
MFEM_USE_MEMALLOC = YES
|
||||
MFEM_TIMER_TYPE = $(if $(NOTMAC),2,4)
|
||||
MFEM_USE_SUNDIALS = NO
|
||||
MFEM_USE_MESQUITE = NO
|
||||
MFEM_USE_SUITESPARSE = NO
|
||||
MFEM_USE_SUPERLU = NO
|
||||
MFEM_USE_STRUMPACK = NO
|
||||
MFEM_USE_GECKO = NO
|
||||
MFEM_USE_GNUTLS = NO
|
||||
MFEM_USE_NETCDF = NO
|
||||
MFEM_USE_PETSC = NO
|
||||
MFEM_USE_MPFR = NO
|
||||
MFEM_USE_SIDRE = NO
|
||||
MFEM_USE_CONDUIT = NO
|
||||
MFEM_USE_PUMI = NO
|
||||
MFEM_USE_CUDA = NO
|
||||
MFEM_USE_RAJA = NO
|
||||
MFEM_USE_OCCA = NO
|
||||
MFEM_USE_MM = NO
|
||||
MFEM_USE_MPI = NO
|
||||
# FIXME: add MFEM_USE_BACKENDS, MFEM_USE_OCCA to the CMake build system
|
||||
MFEM_USE_BACKENDS = YES
|
||||
MFEM_USE_OCCA = YES
|
||||
MFEM_USE_METIS = $(MFEM_USE_MPI)
|
||||
MFEM_USE_METIS_5 = NO
|
||||
MFEM_DEBUG = NO
|
||||
MFEM_USE_EXCEPTIONS = NO
|
||||
MFEM_USE_GZSTREAM = NO
|
||||
MFEM_USE_LIBUNWIND = NO
|
||||
MFEM_USE_LAPACK = NO
|
||||
MFEM_THREAD_SAFE = NO
|
||||
MFEM_USE_OPENMP = NO
|
||||
MFEM_USE_MEMALLOC = YES
|
||||
MFEM_TIMER_TYPE = $(if $(NOTMAC),2,4)
|
||||
MFEM_USE_SUNDIALS = NO
|
||||
MFEM_USE_MESQUITE = NO
|
||||
MFEM_USE_SUITESPARSE = NO
|
||||
MFEM_USE_SUPERLU = NO
|
||||
MFEM_USE_STRUMPACK = NO
|
||||
MFEM_USE_GECKO = NO
|
||||
MFEM_USE_GNUTLS = NO
|
||||
MFEM_USE_NETCDF = NO
|
||||
MFEM_USE_PETSC = NO
|
||||
MFEM_USE_MPFR = NO
|
||||
MFEM_USE_SIDRE = NO
|
||||
MFEM_USE_CONDUIT = NO
|
||||
# FIXME: add MFEM_USE_OMP and MFEM_USE_ACROTENSOR to the CMake build system
|
||||
MFEM_USE_OMP = NO
|
||||
MFEM_USE_ACROTENSOR = NO
|
||||
MFEM_USE_CUDAUM = NO
|
||||
|
||||
# Compile and link options for zlib.
|
||||
ZLIB_DIR =
|
||||
@@ -136,7 +124,7 @@ LIBUNWIND_OPT = -g
|
||||
LIBUNWIND_LIB = $(if $(NOTMAC),-lunwind -ldl,)
|
||||
|
||||
# HYPRE library configuration (needed to build the parallel version)
|
||||
HYPRE_DIR = @MFEM_DIR@/../hypre/src/hypre
|
||||
HYPRE_DIR = @MFEM_DIR@/../hypre-2.10.0b/src/hypre
|
||||
HYPRE_OPT = -I$(HYPRE_DIR)/include
|
||||
HYPRE_LIB = -L$(HYPRE_DIR)/lib -lHYPRE
|
||||
|
||||
@@ -154,8 +142,6 @@ ifeq ($(MFEM_USE_SUPERLU)$(MFEM_USE_STRUMPACK),NONO)
|
||||
else
|
||||
# ParMETIS: currently needed by SuperLU or STRUMPACK. We assume that METIS 5
|
||||
# (included with ParMETIS) is installed in the same location.
|
||||
# Starting with STRUMPACK v2.2.0, ParMETIS is an optional dependency while
|
||||
# METIS is still required.
|
||||
METIS_DIR = @MFEM_DIR@/../parmetis-4.0.3
|
||||
METIS_OPT = -I$(METIS_DIR)/include
|
||||
METIS_LIB = -L$(METIS_DIR)/lib -lparmetis -lmetis
|
||||
@@ -167,7 +153,7 @@ LAPACK_OPT =
|
||||
LAPACK_LIB = $(if $(NOTMAC),-llapack -lblas,-framework Accelerate)
|
||||
|
||||
# OpenMP configuration
|
||||
OPENMP_OPT = $(XCOMPILER)-fopenmp
|
||||
OPENMP_OPT = -fopenmp
|
||||
OPENMP_LIB =
|
||||
|
||||
# Used when MFEM_TIMER_TYPE = 2
|
||||
@@ -203,8 +189,7 @@ SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_5.1.0
|
||||
SUPERLU_OPT = -I$(SUPERLU_DIR)/SRC
|
||||
SUPERLU_LIB = -Wl,-rpath,$(SUPERLU_DIR)/SRC -L$(SUPERLU_DIR)/SRC -lsuperlu_dist
|
||||
|
||||
# SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
|
||||
# STRUMPACK >= v2.2.0)
|
||||
# SCOTCH library configuration (required by STRUMPACK)
|
||||
SCOTCH_DIR = @MFEM_DIR@/../scotch_6.0.4
|
||||
SCOTCH_OPT = -I$(SCOTCH_DIR)/include
|
||||
SCOTCH_LIB = -L$(SCOTCH_DIR)/lib -lptscotch -lptscotcherr -lscotch -lscotcherr\
|
||||
@@ -293,29 +278,30 @@ SIDRE_LIB = \
|
||||
-Wl,-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
|
||||
-lsidre -lslic -laxom_utils -lconduit -lconduit_relay -lhdf5 $(ZLIB_LIB) -ldl
|
||||
|
||||
# PUMI
|
||||
# Note that PUMI_DIR is needed -- it is used to check for gmi_sim.h
|
||||
PUMI_DIR = @MFEM_DIR@/../pumi-2.1.0
|
||||
PUMI_OPT = -I$(PUMI_DIR)/include
|
||||
PUMI_LIB = -L$(PUMI_DIR)/lib -lpumi -lcrv -lma -lmds -lapf -lpcu -lgmi -lparma\
|
||||
-llion -lmth -lapf_zoltan -lspr
|
||||
|
||||
# CUDA library configuration (currently not needed)
|
||||
CUDA_OPT =
|
||||
CUDA_LIB =
|
||||
|
||||
# OCCA library configuration
|
||||
OCCA_DIR = @MFEM_DIR@/../occa
|
||||
OCCA_OPT = -I$(OCCA_DIR)/include
|
||||
OCCA_LIB = $(XLINKER)-rpath,$(OCCA_DIR)/lib -L$(OCCA_DIR)/lib -locca
|
||||
OCCA_LIB = -Wl,-rpath,$(OCCA_DIR)/lib -L$(OCCA_DIR)/lib -locca
|
||||
|
||||
# RAJA library configuration
|
||||
RAJA_DIR = @MFEM_DIR@/../raja
|
||||
RAJA_OPT = -I$(RAJA_DIR)/include
|
||||
ifdef CUB_DIR
|
||||
RAJA_OPT += -I$(CUB_DIR)
|
||||
CUDA_DIR = /usr/local/cuda
|
||||
CUDAUM_LIB = -L$(CUDA_DIR)/lib64 -lcudart
|
||||
CUDAUM_OPT = -I$(CUDA_DIR)/include
|
||||
|
||||
OMP_OPT = -qsmp=omp -qoffload
|
||||
|
||||
ACROTENSOR_DIR = @MFEM_DIR@/../acrotensor
|
||||
ACROTENSOR_OPT = -std=c++11 -I$(ACROTENSOR_DIR)/inc
|
||||
ACROTENSOR_LIB = -Wl,-rpath,$(ACROTENSOR_DIR)/lib/shared -L$(ACROTENSOR_DIR)/lib/shared -lacrotensor
|
||||
# If Acrotensor was compile with CUDA support, but MFEM_USE_CUDAUM==NO, then uncomment the lines below
|
||||
# ACROTENSOR_OPT += -I$(CUDA_DIR)/include
|
||||
# ACROTENSOR_LIB += -L$(CUDA_DIR)/lib64 -lcuda -lcudart -lnvrtc
|
||||
ifeq ($(MFEM_USE_CUDAUM),YES)
|
||||
ifeq ($(MFEM_USE_MPI),YES)
|
||||
# HYPRE needs some extra libraries in parallel on the GPU
|
||||
# FIXME: We need another solution for compilers other than XL for the
|
||||
# dlink CUDA step, but fixes need to happen elsewhere as well.
|
||||
HYPRE_LIB += -qcuda -lcublas -lcusparse -lnvToolsExt
|
||||
endif
|
||||
endif
|
||||
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA
|
||||
|
||||
# If YES, enable some informational messages
|
||||
VERBOSE = NO
|
||||
|
||||
+2
-11
@@ -38,9 +38,6 @@ all: header config-mk
|
||||
MPI = $(MFEM_USE_MPI:NO=)
|
||||
GHV = get_hypre_version
|
||||
GHV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(HYPRE_OPT))
|
||||
SMX = $(if $(MFEM_USE_PUMI:NO=),MFEM_USE_SIMMETRIX)
|
||||
SMX_PATH = $(PUMI_DIR)/include/gmi_sim.h
|
||||
SMX_FILE = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(SMX_PATH))
|
||||
|
||||
$(GHV): $(SRC)$(GHV).cpp
|
||||
$(call mfem-info, Determining HYPRE version ...)
|
||||
@@ -55,16 +52,10 @@ get-hypre-version: $(GHV).out
|
||||
$(info HYPRE version: $(MFEM_HYPRE_VERSION)),\
|
||||
$(error Unable to determine HYPRE version))
|
||||
|
||||
check-smx:
|
||||
$(call mfem-info, Checking for Simmetrix header [$(SMX_FILE)] ...)
|
||||
$(eval MFEM_USE_SIMMETRIX:=$(if $(wildcard $(SMX_FILE)),YES,NO))
|
||||
$(call mfem-info, MFEM_USE_SIMMETRIX = $(MFEM_USE_SIMMETRIX))
|
||||
$(eval export MFEM_USE_SIMMETRIX)
|
||||
|
||||
header: $(if $(MPI),get-hypre-version,) $(if $(SMX),check-smx)
|
||||
header: $(if $(MPI),get-hypre-version,)
|
||||
$(call mfem-info, Writing $(CONFIG_HPP) ...)
|
||||
@set -- && \
|
||||
for def in $${MFEM_DEFINES} $(if $(MPI),MFEM_HYPRE_VERSION) $(SMX); do \
|
||||
for def in $${MFEM_DEFINES} $(if $(MPI),MFEM_HYPRE_VERSION,); do \
|
||||
eval var=\$$$$def && \
|
||||
if [ "NO" != "$${var}" ]; then \
|
||||
set -- "$$@" -e "s|// \(#define $${def} \)|\1|" && \
|
||||
|
||||
+8
-36
@@ -18,8 +18,6 @@ run_prefix=""
|
||||
run_vg="valgrind --leak-check=full --show-reachable=yes --track-origins=yes"
|
||||
run_suffix="-no-vis"
|
||||
skip_gen_meshes="yes"
|
||||
# filter-out device runs ("no") or non-device runs ("yes"):
|
||||
device_runs="no"
|
||||
cur_dir="${PWD}"
|
||||
mfem_dir="$(cd "$(dirname "$0")"/.. && pwd)"
|
||||
mfem_build_dir=""
|
||||
@@ -32,7 +30,7 @@ groups_serial=(
|
||||
'"examples"
|
||||
"Examples:"
|
||||
"examples"
|
||||
"ex{,1,2}[0-9].cpp"'
|
||||
"ex{,1}[0-9].cpp"'
|
||||
# "ex1.cpp"'
|
||||
'"sundials"
|
||||
"SUNDIALS examples:"
|
||||
@@ -46,15 +44,14 @@ groups_serial=(
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
|
||||
mesh-optimizer.cpp"'
|
||||
"mobius-strip.cpp klein-bottle.cpp mesh-optimizer.cpp"'
|
||||
)
|
||||
# Parallel groups
|
||||
groups_parallel=(
|
||||
'"examples"
|
||||
"Examples:"
|
||||
"examples"
|
||||
"ex{,1,2}[0-9]p.cpp"'
|
||||
"ex{,1}[0-9]p.cpp"'
|
||||
# "ex1p.cpp"'
|
||||
'"sundials"
|
||||
"SUNDIALS examples:"
|
||||
@@ -84,7 +81,7 @@ groups_all=(
|
||||
'"examples"
|
||||
"Examples:"
|
||||
"examples"
|
||||
"ex\"{,1,2}[0-9]\"{,p}.cpp"'
|
||||
"ex\"{,1}[0-9]\"{,p}.cpp"'
|
||||
'"sundials"
|
||||
"SUNDIALS examples:"
|
||||
"examples/sundials"
|
||||
@@ -100,8 +97,7 @@ groups_all=(
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
|
||||
{,p}mesh-optimizer.cpp"'
|
||||
"mobius-strip.cpp klein-bottle.cpp {,p}mesh-optimizer.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
@@ -150,11 +146,6 @@ function extract_sample_runs()
|
||||
if [ "$skip_gen_meshes" == "yes" ]; then
|
||||
runs=`printf "%s" "$runs" | grep -v ".* -m .*\.gen"`
|
||||
fi
|
||||
if [ "$device_runs" == "yes" ]; then
|
||||
runs=`printf "%s" "$runs" | grep ".* -d .*"`
|
||||
else
|
||||
runs=`printf "%s" "$runs" | grep -v ".* -d .*"`
|
||||
fi
|
||||
IFS=$'\n'
|
||||
runs=(${runs})
|
||||
IFS="${old_IFS}"
|
||||
@@ -176,15 +167,9 @@ function help_message()
|
||||
-g <dir> <pattern>
|
||||
Specify explicitly a group (dir + file pattern) to run; This
|
||||
option can be used multiple times to define multiple groups
|
||||
-dev configure only sample runs using devices.
|
||||
To test with a parallel build, the parallel (-p|-par) option
|
||||
should be set first on the command line.
|
||||
-v Enable valgrind
|
||||
-o <dir> [${output_dir:-"<empty>: output goes to stdout"}]
|
||||
If not empty, save output to files inside <dir>
|
||||
-d <dir> [${mfem_build_dir}]
|
||||
If <dir> is different from <mfem_dir> then use an
|
||||
out-of-source build in <dir>
|
||||
-j <np> [${make_j}] Specify the number of jobs to use for building
|
||||
-c|-color Always use colors for the status messages: OK, FAILED, etc
|
||||
-b|-built Do NOT rebuild the library and the executables
|
||||
@@ -211,8 +196,8 @@ function help_message()
|
||||
Their values can also set using the respective uppercase environment
|
||||
variable
|
||||
mfem_build_dir [${mfem_build_dir}]
|
||||
Same as '-d': set this variable to something different from <mfem_dir>
|
||||
to use an out-of-source build
|
||||
Set this variable to something different from <mfem_dir> to use an
|
||||
out-of-source build
|
||||
|
||||
For other valid variables, see the script source.
|
||||
|
||||
@@ -263,7 +248,7 @@ case "$1" in
|
||||
-h|-help)
|
||||
opt_help="yes"
|
||||
;;
|
||||
-p|-par)
|
||||
-p|-parallel)
|
||||
mfem_config="MFEM_USE_MPI=YES MFEM_DEBUG=NO"
|
||||
;;
|
||||
-g)
|
||||
@@ -274,11 +259,6 @@ case "$1" in
|
||||
groups=("${groups[@]}" "${test_group}")
|
||||
shift 2
|
||||
;;
|
||||
-dev)
|
||||
device_runs="yes"
|
||||
mfem_config+=" MFEM_USE_CUDA=YES MFEM_USE_MM=YES \
|
||||
MFEM_USE_OCCA=YES MFEM_USE_RAJA=YES MFEM_USE_OPENMP=YES"
|
||||
;;
|
||||
-v)
|
||||
valgrind="yes"
|
||||
;;
|
||||
@@ -286,10 +266,6 @@ MFEM_USE_OCCA=YES MFEM_USE_RAJA=YES MFEM_USE_OPENMP=YES"
|
||||
shift
|
||||
output_dir="$1"
|
||||
;;
|
||||
-d)
|
||||
shift
|
||||
mfem_build_dir="$1"
|
||||
;;
|
||||
-j)
|
||||
shift
|
||||
make_j="-j $1"
|
||||
@@ -309,10 +285,6 @@ MFEM_USE_OCCA=YES MFEM_USE_RAJA=YES MFEM_USE_OPENMP=YES"
|
||||
-n)
|
||||
run_prefix="echo"
|
||||
;;
|
||||
-*)
|
||||
echo "unknown option: '$1'"
|
||||
exit 1
|
||||
;;
|
||||
*=*)
|
||||
eval $1
|
||||
;;
|
||||
|
||||
+2
-5
@@ -14,13 +14,11 @@
|
||||
# Colors used below:
|
||||
# green '\033[0;32m'
|
||||
# red '\033[0;31m'
|
||||
# yellow '\033[0;33m'
|
||||
# no color '\033[0m'
|
||||
COLOR_PRINT = if [ -t 1 ]; then \
|
||||
printf $(1)$(2)'\033[0m'$(3); else printf $(2)$(3); fi
|
||||
PRINT_OK = $(call COLOR_PRINT,'\033[0;32m',OK," ($$1 $$2)\n")
|
||||
PRINT_FAILED = $(call COLOR_PRINT,'\033[0;31m',FAILED," ($$1 $$2)\n")
|
||||
PRINT_SKIP = $(call COLOR_PRINT,'\033[0;33m',SKIP,"\n")
|
||||
|
||||
# Timing support
|
||||
define TIMECMD_detect
|
||||
@@ -38,7 +36,7 @@ export TIME='%es %MkB %x'; \
|
||||
set -- $$($(1) $(SHELL) -c "$(2)" 2>&1); while [ "$$#" -gt 3 ]; do shift; done
|
||||
endef
|
||||
define TIMECMD.NOTGNU
|
||||
set -- $$($(1) -l $(SHELL) -c "{ $(2); } > /dev/null 2>&1" 2>&1; echo $$?); \
|
||||
set -- $$($(1) -l $(SHELL) -c "$(2)" 2>&1; echo $$?); \
|
||||
set -- "$$1"s "$$(($$7/1024))"kB "$${60}"
|
||||
endef
|
||||
define TIMECMD.BASH
|
||||
@@ -60,8 +58,7 @@ endif
|
||||
# Test runs of the examples/miniapps with parameters - check exit code
|
||||
mfem-test = \
|
||||
printf " $(3) [$(2) $(1) ... ]: "; \
|
||||
$(call $(TIMEFUN),$(TIMECMD),$(2) ./$(1) $(if $(5),,-no-vis )$(4) \
|
||||
> $(1).stderr 2>&1); \
|
||||
$(call $(TIMEFUN),$(TIMECMD),$(2) ./$(1) -no-vis $(4) > $(1).stderr 2>&1); \
|
||||
if [ "$$3" = 0 ]; \
|
||||
then $(PRINT_OK); else $(PRINT_FAILED); cat $(1).stderr; fi; \
|
||||
rm -f $(1).stderr; exit $$3
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user