Vector::DeleteAt on device using InclusiveScan

# Conflicts:
#	mesh/mesh.cpp

.github/actions/sanitize/mfem/action.yml

@@ -25,7 +25,7 @@ runs:
   steps:
     - uses: ./.github/actions/sanitize/config
 
-    - uses: actions/cache@v5
+    - uses: actions/cache@v4
       if: ${{env.DEBUG == 'true'}}
       id: debug
       with:

.github/actions/sanitize/restore/action.yml

@@ -36,7 +36,7 @@ runs:
   steps:
     - uses: ./.github/actions/sanitize/config
 
-    - uses: actions/cache@v5
+    - uses: actions/cache@v4
       if: ${{env.DEBUG == 'true' && inputs.cache-skip != 'true'}}
       id: debug
       with:

.github/actions/sanitize/setup/action.yml

@@ -23,7 +23,7 @@ inputs:
 runs:
   using: 'composite'
   steps:
-    - uses: actions/cache/restore@v5  # Cache for LLVM libcxx
+    - uses: actions/cache/restore@v4  # Cache for LLVM libcxx
       with:
         path: ${{env.LLVM_DIR}}
         fail-on-cache-miss: true
@@ -32,14 +32,14 @@ runs:
     - uses: ./.github/actions/sanitize/mpi
       if: ${{inputs.par == 'true'}}
 
-    - uses: actions/cache/restore@v5  # Cache for Hypre
+    - uses: actions/cache/restore@v4  # Cache for Hypre
       if: ${{inputs.par == 'true'}}
       with:
         path: ${{env.HYPRE_DIR}}
         fail-on-cache-miss: true
         key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
 
-    - uses: actions/cache/restore@v5  # Cache for Metis
+    - uses: actions/cache/restore@v4  # Cache for Metis
       if: ${{inputs.par == 'true'}}
       with:
         path: ${{env.METIS_DIR}}
@@ -51,13 +51,13 @@ runs:
       run: ln -s -f ${{env.HYPRE_DIR}} hypre && ln -s -f ${{env.METIS_DIR}} metis-4.0
       shell: bash
 
-    - uses: actions/cache/restore@v5  # Cache for LSAN suppression file
+    - uses: actions/cache/restore@v4  # Cache for LSAN suppression file
       with:
         path: ${{env.LSAN_DIR}}
         fail-on-cache-miss: true
         key: build-lsan-suppression-file
 
-    - uses: actions/checkout@v6  # Checkout the repository
+    - uses: actions/checkout@v4  # Checkout the repository
       with:
         path: mfem
         # ref: ${{env.BRANCH}}

.github/workflows/build-container.yml

@@ -43,7 +43,7 @@ jobs:
           remove-docker-images: 'true'
 
       - name: Checkout
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
 
       # It's easier to reference named variables than indexes of the matrix
       - name: Set Environment

.github/workflows/builds-and-tests.yml

@@ -132,14 +132,12 @@ jobs:
             hypre-target: int32
             precision: fp64
             enzyme: true
-            config-opts: MFEM_USE_ENZYME=YES ENZYME_DIR=$(brew --prefix enzyme) LDFLAGS=-L$LLVM_PREFIX/lib/c++
+            config-opts: MFEM_USE_ENZYME=YES ENZYME_DIR=$(brew --prefix enzyme)
 
     name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}${{ matrix.enzyme && '-enzyme' || '' }}
 
     runs-on: ${{ matrix.os }}
 
-    continue-on-error: ${{ matrix.enzyme && true || false }}
-
     steps:
       # Fix 'No space left on device' errors for Ubuntu builds.
       - name: Run Actions Cleaner
@@ -153,7 +151,7 @@ jobs:
       # /home/runner/work/mfem/mfem/mfem
       # Note: Done now to access "install-hypre" and "install-metis" actions.
       - name: checkout mfem
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
         with:
           path: ${{ env.MFEM_TOP_DIR }}
           # Fetch the complete history for codecov to access commits ID
@@ -225,7 +223,7 @@ jobs:
       - name: cache hypre
         id: hypre-cache
         if: matrix.mpi == 'par'
-        uses: actions/cache@v5
+        uses: actions/cache@v4
         with:
           path: ${{ env.HYPRE_TOP_DIR }}
           key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-v2.5
@@ -255,7 +253,7 @@ jobs:
       - name: cache metis
         id: metis-cache
         if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
-        uses: actions/cache@v5
+        uses: actions/cache@v4
         with:
           path: ${{ env.METIS_TOP_DIR }}
           key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
@@ -270,7 +268,7 @@ jobs:
       - name: cache vcpkg (Windows)
         id: vcpkg-cache
         if: matrix.os == 'windows-latest'
-        uses: actions/cache@v5
+        uses: actions/cache@v4
         with:
           path: vcpkg_cache
           key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
@@ -294,12 +292,10 @@ jobs:
         run: |
           export HOMEBREW_NO_INSTALL_CLEANUP=1
           brew update
-          brew install enzyme
-          ENZYME_LLVM=$(brew info enzyme | sed -n 's/^Required:.*\(llvm[^ ]*\).*/\1/p')
-          LLVM_PREFIX=$(brew --prefix $ENZYME_LLVM)
-          echo "LLVM_PREFIX=$LLVM_PREFIX" >> $GITHUB_ENV
-          echo "OMPI_CC=$LLVM_PREFIX/bin/clang" >> $GITHUB_ENV
-          echo "OMPI_CXX=$LLVM_PREFIX/bin/clang++" >> $GITHUB_ENV
+          brew install llvm@20 enzyme
+          echo "LLVM_PREFIX=$(brew --prefix llvm@20)" >> $GITHUB_ENV
+          echo "OMPI_CC=$(brew --prefix llvm@20)/bin/clang" >> $GITHUB_ENV
+          echo "OMPI_CXX=$(brew --prefix llvm@20)/bin/clang++" >> $GITHUB_ENV
 
       # MFEM build and test
       - name: build

.github/workflows/codeql-analysis.yml

@@ -40,11 +40,11 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
 
       # Initializes the CodeQL tools for scanning.
       - name: Initialize CodeQL
-        uses: github/codeql-action/init@v4
+        uses: github/codeql-action/init@v2
         with:
           languages: ${{ matrix.language }}
           # If you wish to specify custom queries, you can do so here or in a config file.
@@ -57,7 +57,7 @@ jobs:
       # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
       # If this step fails, then you should remove it and run the build manually (see below)
       - name: Autobuild
-        uses: github/codeql-action/autobuild@v4
+        uses: github/codeql-action/autobuild@v2
 
       # ℹ️ Command-line programs to run using the OS shell.
       # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
@@ -70,4 +70,4 @@ jobs:
       #   ./location_of_script_within_repo/buildscript.sh
 
       - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@v4
+        uses: github/codeql-action/analyze@v2

.github/workflows/mfem-analysis.yml

@@ -39,7 +39,7 @@ jobs:
 
     steps:
       - name: checkout MFEM
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
         with:
           path: mfem
 
@@ -50,7 +50,7 @@ jobs:
 
       - name: Cache Hypre Install
         id: hypre-cache
-        uses: actions/cache@v5
+        uses: actions/cache@v4
         with:
           path: ${{ env.HYPRE_TOP_DIR }}
           key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-v2.5
@@ -65,7 +65,7 @@ jobs:
 
       - name: Cache Metis Install
         id: metis-cache
-        uses: actions/cache@v5
+        uses: actions/cache@v4
         with:
           path: ${{ env.METIS_TOP_DIR }}
           key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5

.github/workflows/repo-check.yml

@@ -38,7 +38,7 @@ jobs:
        github.event.pull_request.head.repo.full_name != github.repository)
     steps:
       - name: checkout mfem
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
 
       - name: copyright check
         id: copyright
@@ -93,7 +93,7 @@ jobs:
        github.event.pull_request.head.repo.full_name != github.repository)
     steps:
       - name: checkout mfem
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
 
       - name: get astyle
         run: |
@@ -110,7 +110,7 @@ jobs:
        github.event.pull_request.head.repo.full_name != github.repository)
     steps:
       - name: checkout mfem
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
 
       - name: get doxygen and graphviz
         run: |
@@ -135,7 +135,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: checkout mfem
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/sanitize-build-hypre.yml

@@ -17,11 +17,11 @@ jobs:
     runs-on: ubuntu-latest
     name: 2.19.0
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - uses: ./.github/actions/sanitize/config
       - name: Cache
         id: cache
-        uses: actions/cache@v5
+        uses: actions/cache@v4
         with:
           path: ${{env.HYPRE_DIR}}
           key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5

.github/workflows/sanitize-build-libcxx.yml

@@ -27,13 +27,13 @@ jobs:
             llvm_use_sanitizer: "Undefined"
     name: ${{matrix.sanitizer}}
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - uses: ./.github/actions/sanitize/config
         with:
           NO_FLAGS: true
       - name: Cache
         id: cache
-        uses: actions/cache@v5
+        uses: actions/cache@v4
         with:
           path: ${{env.LLVM_DIR}}
           key: build-libcxx-${{env.LLVM_VER}}-${{matrix.sanitizer}}

.github/workflows/sanitize-build-lsan.yml

@@ -17,11 +17,11 @@ jobs:
     runs-on: ubuntu-latest
     name: lsan.supp
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - uses: ./.github/actions/sanitize/config
       - name: Cache
         id: cache
-        uses: actions/cache@v5
+        uses: actions/cache@v4
         with:
           path: ${{env.LSAN_DIR}}
           key: build-lsan-suppression-file

.github/workflows/sanitize-build-metis.yml

@@ -17,11 +17,11 @@ jobs:
     runs-on: ubuntu-latest
     name: 4.0.3
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - uses: ./.github/actions/sanitize/config
       - name: Cache
         id: cache
-        uses: actions/cache@v5
+        uses: actions/cache@v4
         with:
           path: ${{env.METIS_DIR}}
           key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5

.github/workflows/sanitize-tests.yml

@@ -28,7 +28,7 @@ jobs:
   build:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - uses: ./.github/actions/sanitize/mfem
         with:
           par: ${{inputs.par}}
@@ -40,7 +40,7 @@ jobs:
     env:
       ex: ${{inputs.par && 'ex1p' || 'ex1'}}
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - uses: ./.github/actions/sanitize/restore
         id: restore
         with:
@@ -58,7 +58,7 @@ jobs:
     env:
       exclude: ${{inputs.par && '-E "_ser"' || ''}}
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - uses: ./.github/actions/sanitize/restore
         id: restore
         with:
@@ -82,7 +82,7 @@ jobs:
     env:
       exclude: ${{inputs.par && '-E "_ser"' || ''}}
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - uses: ./.github/actions/sanitize/restore
         id: restore
         with:
@@ -107,7 +107,7 @@ jobs:
       run: ${{inputs.par && '-R "_cpu_np"' || ''}}
       exclude: ${{inputs.par && '"unit_tests|debug"' || '"^unit_tests$|debug"'}}
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - uses: ./.github/actions/sanitize/restore
         id: restore
         with:
@@ -131,7 +131,7 @@ jobs:
     env:
       unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - uses: ./.github/actions/sanitize/restore
         id: restore
         with:
@@ -165,7 +165,7 @@ jobs:
       unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
       np: ${{inputs.par && '_np=2' || ''}}
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - uses: ./.github/actions/sanitize/restore
         id: restore
         with:

.github/workflows/stale.yml

@@ -29,47 +29,3 @@ jobs:
         operations-per-run: 500
         exempt-issue-labels: "bug,WIP,ready-for-review,in-review,in-next"
         exempt-pr-labels: "bug,WIP,ready-for-review,in-review,in-next"
-
-  # Stale action for PRs with "in-review" label.
-  stale-in-review-pr:
-
-    runs-on: ubuntu-latest
-    permissions:
-      issues: write
-      pull-requests: write
-      actions: write
-
-    steps:
-    - uses: actions/stale@v9
-      with:
-        repo-token: ${{ secrets.GITHUB_TOKEN }}
-        stale-pr-message: ':warning: This PR has been automatically marked as stale because it has not had any activity in the last 150 days. *If no activity occurs in the next 30 days, it will be automatically closed.* Thank you for your contributions.'
-        only-pr-labels: "in-review"
-        days-before-pr-stale: 150
-        days-before-pr-close: 30
-        days-before-issue-stale: -1
-        days-before-issue-close: -1
-        stale-pr-label: 'stale'
-        operations-per-run: 500
-
-  # Stale action for PRs with "WIP" label.
-  stale-wip-pr:
-
-    runs-on: ubuntu-latest
-    permissions:
-      issues: write
-      pull-requests: write
-      actions: write
-
-    steps:
-    - uses: actions/stale@v9
-      with:
-        repo-token: ${{ secrets.GITHUB_TOKEN }}
-        stale-pr-message: ':warning: This PR has been automatically marked as stale because it has not had any activity in the last 300 days. *If no activity occurs in the next 30 days, it will be automatically closed.* Thank you for your contributions.'
-        only-pr-labels: "WIP"
-        days-before-pr-stale: 300
-        days-before-pr-close: 30
-        days-before-issue-stale: -1
-        days-before-issue-close: -1
-        stale-pr-label: 'stale'
-        operations-per-run: 500

.gitignore

@@ -19,15 +19,9 @@ CMakeFiles/
 # Clangd server cache
 *.cache*
 
-#vscode settings
-/.vscode/
-
 # Backup files
 *~
 
-# clangd index
-/.cache/
-
 # Default install location
 /mfem/
 
@@ -85,17 +79,12 @@ examples/sol_u.*
 examples/sol_p.*
 examples/sol_r.*
 examples/sol_i.*
-examples/sol_z.*
 examples/ex6p-checkpoint.*
 examples/order.*
 examples/ex9.mesh
 examples/ex9-mesh.*
 examples/ex9-init.*
 examples/ex9-final.*
-examples/ex41.mesh
-examples/ex41-mesh.*
-examples/ex41-init.*
-examples/ex41-final.*
 examples/deformed.*
 examples/velocity.*
 examples/elastic_energy.*
@@ -219,16 +208,10 @@ miniapps/electromagnetics/volta
 miniapps/electromagnetics/tesla
 miniapps/electromagnetics/maxwell
 miniapps/electromagnetics/joule
-miniapps/electromagnetics/lorentz
 miniapps/electromagnetics/Volta-AMR*
 miniapps/electromagnetics/Tesla-AMR*
 miniapps/electromagnetics/Maxwell-Parallel*
 miniapps/electromagnetics/Joule_[0-9]*
-miniapps/electromagnetics/Lorentz_[0-9]*
-miniapps/electromagnetics/Lorentz.dat
-
-miniapps/fluids/schrodinger-flow/schrodinger_flow
-miniapps/fluids/schrodinger-flow/pschrodinger_flow
 
 miniapps/gslib/field-diff
 miniapps/gslib/field-interp
@@ -237,7 +220,6 @@ miniapps/gslib/pfindpts
 miniapps/gslib/schwarz_ex1
 miniapps/gslib/schwarz_ex1p
 miniapps/gslib/interpolated.gf
-miniapps/gslib/particles_redist
 
 miniapps/meshing/mobius-strip
 miniapps/meshing/klein-bottle
@@ -284,8 +266,10 @@ miniapps/meshing/refined.mesh
 miniapps/meshing/bounding-box*
 miniapps/meshing/jacobian-determinant*
 
-miniapps/mtop/ParaView/
-miniapps/mtop/mtop_test_iso_elasticity
+miniapps/mtop/parheat
+miniapps/mtop/ParHeat/*
+miniapps/mtop/seqheat
+miniapps/mtop/SeqHeat/*
 
 miniapps/autodiff/paradiff
 miniapps/autodiff/seqadiff
@@ -295,26 +279,21 @@ miniapps/autodiff/seq_example
 miniapps/autodiff/seq_test
 miniapps/autodiff/Example/*
 
-miniapps/fluids/navier/navier_mms
-miniapps/fluids/navier/navier_kovasznay
-miniapps/fluids/navier/navier_kovasznay_vs
-miniapps/fluids/navier/navier_tgv
-miniapps/fluids/navier/navier_shear
-miniapps/fluids/navier/navier_3dfoc
-miniapps/fluids/navier/navier_turbchan
-miniapps/fluids/navier/navier_cht
-miniapps/fluids/navier/navier_bifurcation
-miniapps/fluids/navier/Navier_Bifurcation_[0-9]*
-miniapps/fluids/navier/ParaView
-miniapps/fluids/navier/tgv_out*.txt
-miniapps/fluids/navier/*_output
+miniapps/navier/navier_mms
+miniapps/navier/navier_kovasznay
+miniapps/navier/navier_kovasznay_vs
+miniapps/navier/navier_tgv
+miniapps/navier/navier_shear
+miniapps/navier/navier_3dfoc
+miniapps/navier/navier_turbchan
+miniapps/navier/navier_cht
+miniapps/navier/tgv_out*.txt
+miniapps/navier/*_output
 
 miniapps/nurbs/nurbs_ex1
 miniapps/nurbs/nurbs_ex1p
 miniapps/nurbs/nurbs_ex3
 miniapps/nurbs/nurbs_ex5
-miniapps/nurbs/nurbs_ex10
-miniapps/nurbs/nurbs_ex10p
 miniapps/nurbs/nurbs_ex11p
 miniapps/nurbs/nurbs_ex24
 miniapps/nurbs/nurbs_solenoidal
@@ -340,14 +319,7 @@ miniapps/nurbs/nurbs_naca_cmesh
 miniapps/nurbs/naca-cmesh.mesh
 miniapps/nurbs/glvis_naca-cmesh.mesh
 miniapps/nurbs/Naca_cmesh
-miniapps/nurbs/nurbs_mesh_info
-miniapps/nurbs/k*_*.dat
 miniapps/nurbs/*-Surface.mesh
-miniapps/nurbs/*.mesh
-miniapps/nurbs/*.sol
-miniapps/nurbs/deformed.*
-miniapps/nurbs/elastic_energy.*
-miniapps/nurbs/velocity.*
 
 miniapps/performance/ex1
 miniapps/performance/ex1p
@@ -369,7 +341,6 @@ miniapps/shifted/lsf_integral
 miniapps/tools/display-basis
 miniapps/tools/load-dc
 miniapps/tools/convert-dc
-miniapps/tools/compare-dc
 miniapps/tools/gridfunction-bounds
 miniapps/tools/lor-transfer
 miniapps/tools/plor-transfer
@@ -440,9 +411,6 @@ miniapps/tribol/contact-patch-test
 miniapps/diag-smoothers/abs-l1-jacobi
 miniapps/diag-smoothers/mg-abs-l1-jacobi
 
-miniapps/contact/contact
-miniapps/contact/ParaView
-
 # Unit test binary and outputs
 tests/unit/output_meshes
 tests/unit/unit_tests

.gitlab-ci.yml

@@ -9,550 +9,91 @@
 # terms of the BSD-3 license. We welcome feedback and contributions, see file
 # CONTRIBUTING.md for details.
 
-# DESCRIPTION:
-###############################################################################
 # General GitLab pipelines configurations for supercomputers and Linux clusters
-# at Lawrence Livermore National Laboratory (LLNL).
-# This entire pipeline is LLNL-specific
-#
-# Important note: This file is a template provided by llnl/radiuss-shared-ci.
-# Remains to set variable values, change the reference to the radiuss-shared-ci
-# repo, opt-in and out optional features. The project can then extend it with
-# additional stages.
-#
-# In addition, each project should copy over and complete:
-# - .gitlab/custom-jobs-and-variables.yml
-# - .gitlab/subscribed-pipelines.yml
-#
-# The jobs should be specified in a file local to the project,
-# - .gitlab/jobs/${CI_MACHINE}.yml
-# or generated (see LLNL/Umpire for an example).
-###############################################################################
-#   MAP OF GITLAB CI
-#######################
-#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-# File dependencies: direct, through jobs, through variables
-#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-# .gitlab-ci.yml
-#  ├── .build-and-test  [job]
-#  │    ├── .gitlab/custom-jobs-and-variables.yml
-#  │    │    ├── .custom_job          [job]
-#  │    │    ├── .reproducer_vars     [job]
-#  │    │    ├── .report_job_success  [job]
-#  │    │    │    └── .gitlab/scripts/report_build_and_test    [script]
-#  │    │    │         ├── .gitlab/scripts/safe_create_rundir  [script]
-#  │    │    │         └── .gitlab/scripts/git_try_to_push     [script]
-#  │    │    ├── .report_job_failure  [job]
-#  │    │    │    └── .gitlab/scripts/report_build_and_test    [script]
-#  │    │    │         ├── .gitlab/scripts/safe_create_rundir  [script]
-#  │    │    │         └── .gitlab/scripts/git_try_to_push     [script]
-#  │    │    └── JOB_CMD              [var]
-#  │    │         └── tests/gitlab/build_and_test            [script]
-#  │    │              └── tests/gitlab/get_mfem_uberenv     [script]
-#  │    ├── <radiuss-shared-ci>/pipelines/matrix.yml  [conditional]
-#  │    │    ├── .on_matrix               [job]
-#  │    │    ├── .matrix_reproducer_init  [job]
-#  │    │    ├── .matrix_reproducer_vars  [job]
-#  │    │    ├── .matrix_reproducer_job   [job]
-#  │    │    ├── .matrix_job_command      [job]
-#  │    │    └── .job_on_matrix           [job]
-#  │    ├── <radiuss-shared-ci>/pipelines/dane.yml  [conditional]
-#  │    │    ├── .on_dane               [job]
-#  │    │    ├── .dane_reproducer_init  [job]
-#  │    │    ├── .dane_reproducer_vars  [job]
-#  │    │    ├── .dane_reproducer_job   [job]
-#  │    │    ├── .dane_job_command      [job]
-#  │    │    ├── .job_on_dane           [job]
-#  │    │    ├── allocate_resources     [job]
-#  │    │    └── release_resources      [job]
-#  │    ├── <radiuss-shared-ci>/pipelines/tioga.yml  [conditional]
-#  │    │    ├── .on_tioga               [job]
-#  │    │    ├── .tioga_reproducer_init  [job]
-#  │    │    ├── .tioga_reproducer_vars  [job]
-#  │    │    ├── .tioga_reproducer_job   [job]
-#  │    │    ├── .tioga_job_command      [job]
-#  │    │    ├── .job_on_tioga           [job]
-#  │    │    ├── allocate_resources      [job]
-#  │    │    └── release_resources       [job]
-#  │    ├── <artifact>/matrix-jobs.yml  [conditional, from 'generate-job-lists']
-#  │    │    ├── .gitlab/jobs/matrix.yml
-#  │    │    │    ├── .matrix_reproducer_vars      [job]
-#  │    │    │    ├── setup                        [job]
-#  │    │    │    │    └── ./tests/gitlab/build_and_test_setup  [script]
-#  │    │    │    ├── opt_mpi_cuda_gcc             [job]
-#  │    │    │    └── opt_mpi_cuda_hypre_cuda_gcc  [job]
-#  │    │    └── .gitlab/jobs/matrix-reports.yml  [used conditionally]
-#  │    │         ├── report_job_success
-#  │    │         └── report_job_failure
-#  │    ├── <artifact>/dane-jobs.yml    [conditional, from 'generate-job-lists']
-#  │    │    ├── .gitlab/jobs/dane.yml
-#  │    │    │    ├── .dane_reproducer_vars    [job]
-#  │    │    │    ├── setup                    [job]
-#  │    │    │    │    └── ./tests/gitlab/build_and_test_setup  [script]
-#  │    │    │    ├── debug_ser_gcc_10         [job]
-#  │    │    │    ├── debug_par_gcc_10         [job]
-#  │    │    │    ├── opt_ser_gcc_10           [job]
-#  │    │    │    ├── opt_par_gcc_10           [job]
-#  │    │    │    ├── opt_par_gcc_10_sundials  [job]
-#  │    │    │    ├── opt_par_gcc_10_petsc     [job]
-#  │    │    │    └── opt_par_gcc_10_pumi      [job]
-#  │    │    └── .gitlab/jobs/dane-reports.yml    [used conditionally]
-#  │    │         ├── report_job_success
-#  │    │         └── report_job_failure
-#  │    └── <artifact>/tioga-jobs.yml   [conditional, from 'generate-job-lists']
-#  │         ├── .gitlab/jobs/tioga.yml
-#  │         │    ├── .tioga_reproducer_vars  [job]
-#  │         │    ├── setup                   [job]
-#  │         │    │    └── ./tests/gitlab/build_and_test_setup  [script]
-#  │         │    └── cce_16_0_1              [job]
-#  │         └── .gitlab/jobs/tioga-reports.yml   [used conditionally]
-#  │              ├── report_job_success
-#  │              └── report_job_failure
-#  └── .gitlab/subscribed-pipelines.yml
-#       ├── .machine-check         [job]
-#       ├── generate-job-lists     [job]
-#       ├── dane-up-check          [job]
-#       ├── dane-build-and-test    [job]
-#       ├── dane-baseline          [job]
-#       │    └── .gitlab/dane-baseline.yml
-#       │         ├── .on_dane                       [job]
-#       │         ├── baselinecheck_mfem_intel_dane  [job]
-#       │         │    └── .gitlab/scripts/baseline            [script]
-#       │         ├── cleanup                        [job]
-#       │         ├── report_baseline                [job]
-#       │         │    ├── .gitlab/scripts/safe_create_rundir  [script]
-#       │         │    └── .gitlab/scripts/git_try_to_push     [script]
-#       │         ├── baselinepublish_mfem_dane      [job]
-#       │         │    └── .gitlab/scripts/rebaseline          [script]
-#       │         ├── .gitlab/custom-jobs-and-variables.yml
-#       │         │    └── <same as above: see .gitlab-ci.yml/.build-and-test>
-#       │         └── .gitlab/configs/setup-baseline.yml
-#       │              └── setup_baseline            [job]
-#       ├── tioga-up-check         [job]
-#       ├── tioga-build-and-test   [job]
-#       ├── matrix-up-check        [job]
-#       └── matrix-build-and-test  [job]
-#
-#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-# File tree hierarchy with file contents highlights
-#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-# In addition to the files in the MFEM repo, the Gitlab CI uses files from the
-# radiuss/radiuss-shared-ci project, see below, after the <mfem-root> tree.
-#
-# <mfem root>
-#  ├── .gitlab-ci.yml  [this file]
-#  │    ├── <jobs>
-#  │    │    └── .build-and-test
-#  │    ├── <included files>
-#  │    │    ├── .gitlab/subscribed-pipelines.yml
-#  │    │    ├── .gitlab/custom-jobs-and-variables.yml  [by ".build-and-test"]
-#  │    │    ├── <artifact>  [by ".build-and-test"]
-#  │    │    │    ├── artifact: '${CI_MACHINE}-jobs.yml'
-#  │    │    │    └── job:      'generate-job-lists'
-#  │    │    └── <external>  [by ".build-and-test"]
-#  │    │         ├── project: 'radiuss/radiuss-shared-ci'
-#  │    │         ├── ref:     'v2025.09.1'
-#  │    │         └── file:    'pipelines/${CI_MACHINE}.yml'
-#  │    └── <defined variables>
-#  │         ├── CUSTOM_CI_BUILDS_DIR
-#  │         ├── USER_CI_TOP_DIR
-#  │         ├── SHARED_REPOS_DIR
-#  │         ├── AUTOTEST_ROOT
-#  │         ├── MFEM_DATA_DIR
-#  │         ├── AUTOTEST
-#  │         ├── AUTOTEST_COMMIT
-#  │         ├── REBASELINE
-#  │         ├── GITHUB_PROJECT_NAME
-#  │         └── GITHUB_PROJECT_ORG
-#  ├── .gitlab
-#  │    ├── configs
-#  │    │    └── setup-baseline.yml
-#  │    │         ├── <jobs>
-#  │    │         │    └── setup_baseline
-#  │    │         └── <used variables>
-#  │    │              ├── MACHINE_NAME
-#  │    │              ├── REBASELINE
-#  │    │              ├── AUTOTEST
-#  │    │              ├── AUTOTEST_COMMIT
-#  │    │              ├── BUILD_ROOT
-#  │    │              ├── TPLS_REPO
-#  │    │              ├── TESTS_REPO
-#  │    │              ├── AUTOTEST_ROOT
-#  │    │              └── AUTOTEST_REPO
-#  │    ├── jobs
-#  │    │    ├── matrix-reports.yml
-#  │    │    │    ├── <jobs>
-#  │    │    │    │    ├── report_job_success
-#  │    │    │    │    └── report_job_failure
-#  │    │    │    └── <used jobs>
-#  │    │    │         ├── .on_matrix
-#  │    │    │         ├── .report_job_success
-#  │    │    │         └── .report_job_failure
-#  │    │    ├── matrix.yml
-#  │    │    │    ├── <jobs>
-#  │    │    │    │    ├── .matrix_reproducer_vars
-#  │    │    │    │    ├── setup
-#  │    │    │    │    ├── opt_mpi_cuda_gcc
-#  │    │    │    │    └── opt_mpi_cuda_hypre_cuda_gcc
-#  │    │    │    ├── <used jobs>
-#  │    │    │    │    ├── .reproducer_vars
-#  │    │    │    │    ├── .on_matrix
-#  │    │    │    │    └── .job_on_matrix
-#  │    │    │    ├── <included and used files>
-#  │    │    │    │    └── tests/gitlab/build_and_test_setup  [by "setup"]
-#  │    │    │    └── <defined variables>
-#  │    │    │         └── SPEC
-#  │    │    ├── dane-reports.yml
-#  │    │    │    ├── <jobs>
-#  │    │    │    │    ├── report_job_success
-#  │    │    │    │    └── report_job_failure
-#  │    │    │    └── <used jobs>
-#  │    │    │         ├── .on_dane
-#  │    │    │         ├── .report_job_success
-#  │    │    │         └── .report_job_failure
-#  │    │    ├── dane.yml
-#  │    │    │    ├── <jobs>
-#  │    │    │    │    ├── .dane_reproducer_vars
-#  │    │    │    │    ├── setup
-#  │    │    │    │    ├── debug_ser_gcc_10
-#  │    │    │    │    ├── debug_par_gcc_10
-#  │    │    │    │    ├── opt_ser_gcc_10
-#  │    │    │    │    ├── opt_par_gcc_10
-#  │    │    │    │    ├── opt_par_gcc_10_sundials
-#  │    │    │    │    ├── opt_par_gcc_10_petsc
-#  │    │    │    │    └── opt_par_gcc_10_pumi
-#  │    │    │    ├── <used jobs>
-#  │    │    │    │    ├── .reproducer_vars
-#  │    │    │    │    ├── .on_dane
-#  │    │    │    │    └── .job_on_dane
-#  │    │    │    ├── <included and used files>
-#  │    │    │    │    └── tests/gitlab/build_and_test_setup  [by "setup"]
-#  │    │    │    └── <defined variables>
-#  │    │    │         ├── SPEC
-#  │    │    │         └── THREADS
-#  │    │    ├── tioga-reports.yml
-#  │    │    │    ├── <jobs>
-#  │    │    │    │    ├── report_job_success
-#  │    │    │    │    └── report_job_failure
-#  │    │    │    └── <used jobs>
-#  │    │    │         ├── .on_tioga
-#  │    │    │         ├── .report_job_success
-#  │    │    │         └── .report_job_failure
-#  │    │    └── tioga.yml
-#  │    │         ├── <jobs>
-#  │    │         │    ├── .tioga_reproducer_vars
-#  │    │         │    ├── setup
-#  │    │         │    └── opt_mpi_rocm_hypre_rocm
-#  │    │         ├── <used jobs>
-#  │    │         │    ├── .reproducer_vars
-#  │    │         │    ├── .on_tioga
-#  │    │         │    └── .job_on_tioga
-#  │    │         ├── <included and used files>
-#  │    │         │    └── tests/gitlab/build_and_test_setup  [by "setup"]
-#  │    │         └── <defined variables>
-#  │    │              ├── SPEC
-#  │    │              └── THREADS
-#  │    ├── scripts
-#  │    │    ├── baseline
-#  │    │    │    └── <used variables>
-#  │    │    │         ├── BASELINE_TEST
-#  │    │    │         ├── SYS_TYPE
-#  │    │    │         ├── MACHINE_NAME
-#  │    │    │         ├── CI_PROJECT_DIR
-#  │    │    │         ├── ARTIFACTS_DIR
-#  │    │    │         ├── BUILD_ROOT
-#  │    │    │         └── TPLS_DIR
-#  │    │    ├── git_try_to_push
-#  │    │    ├── rebaseline
-#  │    │    │    └── <used variables>
-#  │    │    │         ├── CI_PROJECT_DIR
-#  │    │    │         ├── ARTIFACTS_DIR
-#  │    │    │         ├── SYS_TYPE
-#  │    │    │         ├── BUILD_ROOT
-#  │    │    │         ├── MACHINE_NAME
-#  │    │    │         └── CI_PIPELINE_ID
-#  │    │    ├── report_build_and_test
-#  │    │    │    ├── <used files>
-#  │    │    │    │    ├── .gitlab/scripts/safe_create_rundir
-#  │    │    │    │    └── .gitlab/scripts/git_try_to_push
-#  │    │    │    └── <used variables>
-#  │    │    │         ├── AUTOTEST_ROOT
-#  │    │    │         ├── CI_COMMIT_REF_SLUG
-#  │    │    │         ├── CI_PROJECT_DIR
-#  │    │    │         ├── CI_PIPELINE_URL
-#  │    │    │         ├── AUTOTEST_COMMIT
-#  │    │    │         └── CI_MACHINE
-#  │    │    └── safe_create_rundir
-#  │    ├── custom-jobs-and-variables.yml
-#  │    │    ├── <jobs>
-#  │    │    │    ├── .custom_job
-#  │    │    │    ├── .reproducer_vars
-#  │    │    │    ├── .report_job_success
-#  │    │    │    └── .report_job_failure
-#  │    │    ├── <used files>
-#  │    │    │    ├── tests/gitlab/build_and_test  [in JOB_CMD]
-#  │    │    │    └── .gitlab/scripts/report_build_and_test [by .report_job_*]
-#  │    │    ├── <defined variables>
-#  │    │    │    ├── JOB_CMD
-#  │    │    │    ├── BUILD_ROOT
-#  │    │    │    ├── ALLOC_NAME
-#  │    │    │    ├── TPLS_REPO
-#  │    │    │    ├── TESTS_REPO
-#  │    │    │    ├── AUTOTEST_REPO
-#  │    │    │    ├── MFEM_DATA_REPO
-#  │    │    │    ├── ARTIFACTS_DIR: artifacts
-#  │    │    │    ├── SLURM_OVERLAP: 1
-#  │    │    │    ├── DANE_SHARED_ALLOC
-#  │    │    │    ├── DANE_JOB_ALLOC
-#  │    │    │    ├── TIOGA_SHARED_ALLOC
-#  │    │    │    ├── TIOGA_JOB_ALLOC
-#  │    │    │    └── MATRIX_JOB_ALLOC
-#  │    │    └── <used variables>
-#  │    │         ├── SPEC
-#  │    │         ├── BUILD_ROOT
-#  │    │         └── ...
-#  │    ├── dane-baseline.yml
-#  │    │    ├── <jobs>
-#  │    │    │    ├── .on_dane
-#  │    │    │    ├── baselinecheck_mfem_intel_dane
-#  │    │    │    ├── cleanup
-#  │    │    │    ├── report_baseline
-#  │    │    │    └── baselinepublish_mfem_dane
-#  │    │    ├── <included and used files>
-#  │    │    │    ├── .gitlab/custom-jobs-and-variables.yml
-#  │    │    │    ├── .gitlab/configs/setup-baseline.yml
-#  │    │    │    ├── .gitlab/scripts/rebaseline
-#  │    │    │    ├── .gitlab/scripts/baseline
-#  │    │    │    └── .gitlab/scripts/git_try_to_push
-#  │    │    ├── <defined variables>
-#  │    │    │    ├── BASELINE_TEST: baseline
-#  │    │    │    ├── MACHINE_NAME: dane
-#  │    │    │    ├── TPLS_DIR
-#  │    │    │    └── export MFEM_TEST_NP
-#  │    │    └── <used variables>
-#  │    │         ├── ON_DANE
-#  │    │         ├── AUTOTEST       [defined by .gitlab-ci.yml]
-#  │    │         ├── BUILD_ROOT     [defined by custom-jobs-and-variables.yml]
-#  │    │         ├── TPLS_DIR       [defined by this file]
-#  │    │         ├── ARTIFACTS_DIR  [defined by custom-jobs-and-variables.yml]
-#  │    │         ├── MACHINE_NAME   [defined by this file]
-#  │    │         ├── AUTOTEST_COMMIT  [defined by .gitlab-ci.yml]
-#  │    │         ├── AUTOTEST_ROOT  [defined by .gitlab-ci.yml]
-#  │    │         ├── BASELINE_TEST  [defined by this file]
-#  │    │         └── REBASELINE     [defined by .gitlab-ci.yml]
-#  │    └── subscribed-pipelines.yml
-#  │         ├── <jobs>
-#  │         │    ├── .machine-check
-#  │         │    ├── generate-job-lists
-#  │         │    ├── dane-up-check
-#  │         │    ├── dane-build-and-test
-#  │         │    ├── dane-baseline
-#  │         │    ├── tioga-up-check
-#  │         │    ├── tioga-build-and-test
-#  │         │    ├── matrix-up-check
-#  │         │    └── matrix-build-and-test
-#  │         ├── <used jobs>
-#  │         │    └── .build-and-test  [from ".gitlab-ci.yml"]
-#  │         ├── <included files>
-#  │         │    └── .gitlab/dane-baseline.yml  [by "dane-baseline"]
-#  │         └── <used variables>
-#  │              ├── GITHUB_PROJECT_ORG
-#  │              ├── GITHUB_PROJECT_NAME
-#  │              ├── AUTOTEST
-#  │              ├── AUTOTEST_COMMIT
-#  │              └── REBASELINE
-#  └── tests
-#       ├── gitlab
-#       │    ├── build_and_test
-#       │    │    ├── <builds and tests a given MFEM spec with uberenv>
-#       │    │    ├── <used files>
-#       │    │    │    ├── tests/uberenv/uberenv.py        [deps mode, cloned]
-#       │    │    │    └── tests/gitlab/get_mfem_uberenv   [deps mode]
-#       │    │    └── <used variables>
-#       │    │         ├── SYS_TYPE
-#       │    │         ├── THREADS      [num. parallel jobs to build MFEM]
-#       │    │         ├── MODULE_LIST  [modules to load]
-#       │    │         ├── CI_JOB_ID
-#       │    │         ├── USE_DEV_SHM
-#       │    │         ├── SPACK_DEBUG
-#       │    │         ├── DEBUG_MODE
-#       │    │         ├── REGISTRY_TOKEN
-#       │    │         ├── CI_REGISTRY_USER  (defined by Gitlab)
-#       │    │         ├── USER
-#       │    │         ├── CI_REGISTRY_IMAGE (defined by Gitlab)
-#       │    │         └── CI_JOB_TOKEN      (defined by Gitlab)
-#       │    ├── build_and_test_setup
-#       │    │    ├── <updates MFEM_DATA_REPO and AUTOTEST_REPO using locks>
-#       │    │    └── <used variables>
-#       │    │         ├── MFEM_DATA_REPO
-#       │    │         ├── SHARED_REPOS_DIR
-#       │    │         ├── AUTOTEST_REPO
-#       │    │         └── AUTOTEST_ROOT
-#       │    └── get_mfem_uberenv
-#       │         ├── <github.com/mfem/mfem-uberenv.git -> tests/uberenv>
-#       │         └── <defines the uberenv hash to use>
-#       └── uberenv  [cloned by tests/gitlab/get_mfem_uberenv]
-#            └── uberenv.py
-#
-# <root of radiuss/radiuss-shared-ci, ref: 'v2025.09.1'>
-#  └── pipelines
-#       ├── matrix.yml
-#       │    ├── <jobs>
-#       │    │    ├── .on_matrix
-#       │    │    ├── .matrix_reproducer_init
-#       │    │    ├── .matrix_reproducer_vars
-#       │    │    ├── .matrix_reproducer_job
-#       │    │    ├── .matrix_job_command
-#       │    │    └── .job_on_matrix
-#       │    ├── <used jobs>
-#       │    │    └── .custom_job  [from .gitlab/custom-jobs-and-variables.yml]
-#       │    └── <used variables>
-#       │         ├── ON_MATRIX
-#       │         ├── ADVANCED_JOB
-#       │         ├── ALL_TARGETS
-#       │         ├── SYS_TYPE
-#       │         ├── LLNL_SERVICE_USER
-#       │         ├── USER
-#       │         ├── GITHUB_PROJECT_NAME
-#       │         ├── GITHUB_PROJECT_ORG
-#       │         ├── MATRIX_JOB_ALLOC
-#       │         └── JOB_CMD
-#       ├── dane.yml
-#       │    ├── <jobs>
-#       │    │    ├── .on_dane
-#       │    │    ├── .dane_reproducer_init
-#       │    │    ├── .dane_reproducer_vars
-#       │    │    ├── .dane_reproducer_job
-#       │    │    ├── .dane_job_command
-#       │    │    ├── .job_on_dane
-#       │    │    ├── allocate_resources
-#       │    │    └── release_resources
-#       │    ├── <used jobs>
-#       │    │    └── .custom_job  [from .gitlab/custom-jobs-and-variables.yml]
-#       │    ├── <defined variables>
-#       │    │    └── export JOBID
-#       │    └── <used variables>
-#       │         ├── ON_DANE
-#       │         ├── ADVANCED_JOB
-#       │         ├── ALL_TARGETS
-#       │         ├── SYS_TYPE
-#       │         ├── LLNL_SERVICE_USER
-#       │         ├── USER
-#       │         ├── GITHUB_PROJECT_NAME
-#       │         ├── GITHUB_PROJECT_ORG
-#       │         ├── DANE_JOB_ALLOC
-#       │         ├── JOB_CMD
-#       │         ├── JOBID
-#       │         ├── ALLOC_NAME
-#       │         └── DANE_SHARED_ALLOC
-#       └── tioga.yml
-#            ├── <jobs>
-#            │    ├── .on_tioga
-#            │    ├── .tioga_reproducer_init
-#            │    ├── .tioga_reproducer_vars
-#            │    ├── .tioga_reproducer_job
-#            │    ├── .tioga_job_command
-#            │    ├── .job_on_tioga
-#            │    ├── allocate_resources
-#            │    └── release_resources
-#            ├── <used jobs>
-#            │    └── .custom_job  [from .gitlab/custom-jobs-and-variables.yml]
-#            ├── <defined variables>
-#            │    └── PROXY
-#            └── <used variables>
-#                 ├── ON_TIOGA
-#                 ├── ADVANCED_JOB
-#                 ├── ALL_TARGETS
-#                 ├── SYS_TYPE
-#                 ├── LLNL_SERVICE_USER
-#                 ├── USER
-#                 ├── GITHUB_PROJECT_NAME
-#                 ├── GITHUB_PROJECT_ORG
-#                 ├── TIOGA_JOB_ALLOC
-#                 ├── JOB_CMD
-#                 ├── PROXY
-#                 ├── ALLOC_NAME
-#                 └── TIOGA_SHARED_ALLOC
+# at Lawrence Livermore National Laboratory (LLNL). This entire pipeline is
+# LLNL-specific!
+
+include:
+  - project: 'lc-templates/id_tokens'
+    file: 'id_tokens.yml'
+
+# The pipeline is divided into stages. Usually, jobs in a given stage wait for
+# the preceding stages to complete before to start. However, we sometimes use
+# the "needs" keyword and express the DAG of jobs for more efficiency.
+# - We use setup and setup_baseline phases to download content outside of mfem
+#   directory.
+# - Allocate/Release is where Dane resource are allocated/released once for all.
+# - Build and Test is where we build and MFEM for multiple toolchains.
+# - Baseline_checks gathers baseline-type test suites execution
+# - Baseline_publish, only available on master, allows to update baseline
+#   results
+stages:
+  - sub-pipelines
 
-###############################################################################
-# We define the following GitLab pipeline variables:
 variables:
-##### LC GITLAB CONFIGURATION
   CUSTOM_CI_BUILDS_DIR: "/usr/workspace/mfem/gitlab-runner"
-
-##### PROJECT VARIABLES
   USER_CI_TOP_DIR: "${CUSTOM_CI_BUILDS_DIR}/${GITLAB_USER_LOGIN}"
   SHARED_REPOS_DIR: "${USER_CI_TOP_DIR}/repos"
   AUTOTEST_ROOT: "${SHARED_REPOS_DIR}"
+  # MFEM_DATA_DIR is setup in '.gitlab/configs/setup-build-and-test.yml' and
+  # used in '.gitlab/configs/<machine>-config.yml':
   MFEM_DATA_DIR: "${SHARED_REPOS_DIR}/mfem-data"
-# AUTOTEST: enable (ON/YES) or disable (any other value) test reporting. See
-# also AUTOTEST_COMMIT.
-  AUTOTEST: "OFF"
-# AUTOTEST_COMMIT: used only when AUTOTEST is set to ON/YES.
-# * If AUTOTEST_COMMIT is set to ON/YES, reporting jobs will commit their
-#   files to the MFEM/autotest repo.
-# * If AUTOTEST_COMMIT is NOT set to ON/YES, reporting jobs will NOT commit
-#   their files to the MFEM/autotest repo. Instead they will just show the
-#   contents of the report files and remove them.
-  AUTOTEST_COMMIT: "ON"
-# REBASELINE:
+
 # Defines the default choice for updating the saved baseline results. By default
 # the baseline can only be updated from the master branch. This variable offers
 # the option to manually ask for rebaselining from another branch if necessary.
-  REBASELINE: "OFF"
+  REBASELINE: "NO"
+  AUTOTEST: "NO"
+  # AUTOTEST_COMMIT: used only when AUTOTEST is set to YES.
+  # * If AUTOTEST_COMMIT is NOT set to NO, reporting jobs will commit their
+  #   files to the MFEM/autotest repo.
+  # * If AUTOTEST_COMMIT is set to NO, reporting jobs will NOT commit their
+  #   files to the MFEM/autotest repo. Instead they will just show the contents
+  #   of the report files and remove them.
+  AUTOTEST_COMMIT: "YES"
 
-##### SHARED_CI CONFIGURATION
-# Required information about GitHub repository
-  GITHUB_PROJECT_NAME: "mfem"
-  GITHUB_PROJECT_ORG: "MFEM"
-# Override the pattern describing branches that will skip the "draft PR filter
-# test".  Add protected branches here. See default value in
-# preliminary-ignore-draft-pr.yml.
-#  ALWAYS_RUN_PATTERN: ""
-
-###############################################################################
-##### High level stages
-# We organize the test-pipelines stage with sub-pipelines. Each sub-pipeline
-# corresponds to a test batch on a given machine.
-stages:
-  - prerequisites
-  - test-pipelines
-
-###############################################################################
-# Template for jobs triggering a build-and-test sub-pipeline:
-.build-and-test:
-  stage: test-pipelines
+# Trigger subpipelines:
+dane-build-and-test:
+  stage: sub-pipelines
   variables:
-    # Explicitly pass down values that are not always propagated to child
-    # pipelines, e.g. when a variable is set in the "Settings -> CI" web
-    # interface (project variables).
-    # Note: in some cases, this does not work as expected, e.g. when the
-    # variable is not re-defined in the web interface; in such cases, the child
-    # pipeline gets a definition like '${AUTOTEST}', i.e. it behaves as if
-    # AUTOTEST is undefined, even though there is a default value in
-    # .gitlab-ci.yml.
+    # Explicitly pass down values that we want to be able to set when triggering
+    # pipelines manually or using scheduling
     AUTOTEST: "${AUTOTEST}"
     AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
   trigger:
-    include:
-      - local: '.gitlab/custom-jobs-and-variables.yml'
-      - project: 'radiuss/radiuss-shared-ci'
-        ref: 'v2025.09.1'
-        file: 'pipelines/${CI_MACHINE}.yml'
-      - artifact: '${CI_MACHINE}-jobs.yml'
-        job: 'generate-job-lists'
+    include: .gitlab/dane-build-and-test.yml
     strategy: depend
-    forward:
-      pipeline_variables: true
 
-###############################################################################
-include:
-  # Sets ID tokens for every job using `default:`
-  - project: 'lc-templates/id_tokens'
-    file: 'id_tokens.yml'
-  # [Optional] checks preliminary to running the actual CI test
-  #- project: 'radiuss/radiuss-shared-ci'
-  #  ref: 'v2025.09.1'
-  #  file: 'preliminary-ignore-draft-pr.yml'
-  # pipelines subscribed by the project
-  - local: '.gitlab/subscribed-pipelines.yml'
+dane-baseline:
+  stage: sub-pipelines
+  variables:
+    # Explicitly pass down values that we want to be able to set when triggering
+    # pipelines manually or using scheduling
+    REBASELINE: "${REBASELINE}"
+    AUTOTEST: "${AUTOTEST}"
+    AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
+  trigger:
+    include: .gitlab/dane-baseline.yml
+    strategy: depend
+
+lassen-build-and-test:
+  stage: sub-pipelines
+  variables:
+    # Explicitly pass down values that we want to be able to set when triggering
+    # pipelines manually or using scheduling
+    AUTOTEST: "${AUTOTEST}"
+    AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
+  trigger:
+    include: .gitlab/lassen-build-and-test.yml
+    strategy: depend
+
+corona-build-and-test:
+  stage: sub-pipelines
+  variables:
+    # Explicitly pass down values that we want to be able to set when triggering
+    # pipelines manually or using scheduling
+    AUTOTEST: "${AUTOTEST}"
+    AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
+  trigger:
+    include: .gitlab/corona-build-and-test.yml
+    strategy: depend

.gitlab/README.md

@@ -15,9 +15,9 @@ and nightly testing on GitLab.
 
 ## Top level
 
-The root configuration file is `.gitlab-ci.yml` at the root of MFEM repo. This
-file only defines three stages, a prerequisites one, and two main stages in
-which we trigger several sub-pipelines.
+The root configuration file is `.gitlab-ci.yml` at the root of MFEM repo.
+This file only defines one stage, in which we trigger several
+sub-pipelines.
 
 We use sub-pipelines to isolate the test for one combination of `machine`
 and `test type`.
@@ -25,8 +25,8 @@ and `test type`.
 Machines typically include:
 
 * Dane: Intel Sapphire Rapids
-* Matrix: Intel Sapphire Rapids + Nvidia H100 GPU
-* Tioga: AMD MI250X GPU
+* Lassen: Power9 + Nvidia GPU
+* Corona: AMD GPU
 
 Test types include:
 
@@ -39,31 +39,9 @@ altering the scheduling, execution and displaying of the others.
 
 ## Sub-pipelines
 
-### build-and-test
-
-The build-and-test sub-pipelines leverage RADIUSS Shared CI to share most of
-the CI implementation. RADIUSS Shared CI provides a shared CI infrastructure
-vetted on most LC systems of interest and efficiently leveraging each machine
-scheduler to increase CI throughput. The maintenance of RADIUSS Shared CI is
-shared among several RADIUSS projects.
-
-Jobs for the build-and-test sub-pipelines are defined in the jobs directory.
-Because build-and-test jobs leverage Uberenv and Spack to build the
-dependencies automatically, the jobs essentially consists in a `spack spec`
-defined in the jobs files, and some scheduling parameters defined in the
-`.gitlab/custom-jobs-and-variables.yml` file.
-
-Build-and-test jobs all run the `tests/gitlab/build_and_test` script.
-
-The build-and-test pipelines are controlled by the
-`.gitlab/subscribed-pipelines.yml` which defines which machines to run on and
-implements additional features like machine availability check, and job list
-generation.
-
-### baseline
-
-Baseline sub-pipelines are described by files with names reflecting the
-machine it runs on, e.g. `dane-baseline`.
+Each file is this directory is the root configuration file for one
+sub-pipeline. The naming reflects the corresponding couple (`machine`,
+`test_type`).
 
 Those files define the *stages* and the *jobs* for the sub-pipeline. They
 also contain any configuration that cannot be shared. For the most part
@@ -85,11 +63,11 @@ usage function. This should be improved.
 
 # More testing
 
-## Adding a new target to a build-and-test pipeline
+## Adding a new target to a build_and_test pipeline
 
-`build-and-test` pipelines rely on Spack to install dependencies. Spack is
+`build_and_test` pipelines rely on Spack to install dependencies. Spack is
 driven by Uberenv which helps freezing Spack configuration: the goal being to
-point to a specific commit in Spack and isolate its configuration so that it is
+point to specific commit in Spack and isolate its configuration so that it is
 not influenced by the user environment. More documentation about this can be
 found in `tests/gitlab`.
 
@@ -104,7 +82,7 @@ spack spec to use. Adding a job on Dane for example resumes to:
 <job_name>:
   variables:
     SPEC: "<spack_spec>"
-  extends: .job_on_dane
+  extends: .build_and_test_on_dane
 ```
 
 The remaining and non trivial work is to make sure this spec is working. To

.gitlab/configs/common.yml

@@ -0,0 +1,40 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+include:
+  - project: 'lc-templates/id_tokens'
+    file: 'id_tokens.yml'
+
+# We define the following GitLab pipeline variables:
+variables:
+
+# The path to the shared resource between all jobs. For example, external
+# repositories like 'tests' and 'tpls' are cloned here. Also, 'tpls' is built
+# once for all targets, so that build happen here. The BUILD_ROOT is unique to
+# the pipeline, preventing any form of concurrency with other pipelines. This
+# also means that the BUILD_ROOT directory will never be cleaned.
+# TODO: add a clean-up mechanism
+  BUILD_ROOT: ${USER_CI_TOP_DIR}/${CI_PROJECT_NAME}-${MACHINE_NAME}-pipeline-${CI_PIPELINE_ID}
+
+# On LLNL's Dane, there is only one allocation shared among jobs in order to
+# save time and resource. This allocation has to be uniquely named so that we
+# are sure to retrieve it.
+  ALLOC_NAME: ${CI_PROJECT_NAME}_ci_${CI_PIPELINE_ID}
+
+# Git repositories used in the pipeline
+  TPLS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tpls.git
+  TESTS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tests.git
+  AUTOTEST_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/autotest.git
+  MFEM_DATA_REPO: https://github.com/mfem/data.git
+
+# Directory used to place artifacts.
+  ARTIFACTS_DIR: artifacts
+  SLURM_OVERLAP: 1

.gitlab/configs/corona-config.yml

@@ -0,0 +1,59 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+# GitLab pipeline configuration for the Corona machine at LLNL
+variables:
+  MACHINE_NAME: corona
+
+.on_corona:
+  tags:
+    - shell
+    - corona
+  rules:
+    # Don't run corona jobs if...
+    # Note: This makes corona an "opt-in" machine. To activate builds on corona
+    # for a given GitLab clone of MFEM, go to Setting/CI-CD/variables, and set
+    # "ON_CORONA" to "ON". An LC account on for corona is required to trigger a
+    # pipeline there.
+    - if: '$CI_COMMIT_BRANCH =~ /_cnone/ || $ON_CORONA != "ON"'
+      when: never
+    # Don't run autotest update if...
+    - if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
+      when: never
+    # Report success on success status
+    - if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
+      when: on_success
+    # Report failure on failure status
+    - if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
+      when: on_failure
+    # Always release resource
+    - if: '$CI_JOB_NAME =~ /release_resource/'
+      when: always
+    # Always cleanup
+    - if: '$CI_JOB_NAME =~ /cleanup/'
+      when: always
+    # Default is to run if previous stage succeeded
+    - when: on_success
+
+# Spack helped builds
+# Generic corona build job, extending build script
+.build_and_test_on_corona:
+  extends: [.on_corona]
+  stage: build_and_test
+  script:
+    # THREADS is used by 'tests/gitlab/build_and_test', run below
+    - export THREADS=12
+    - echo ${ALLOC_NAME}
+    - export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
+    - echo ${JOBID}
+    - echo ${MFEM_DATA_DIR}
+    - echo ${SPEC}
+    - srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 15 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data

.gitlab/configs/dane-config.yml

@@ -0,0 +1,56 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+# GitLab pipelines configurations for the Dane machine at LLNL
+variables:
+  MACHINE_NAME: dane
+
+.on_dane:
+  tags:
+    - shell
+    - dane
+  rules:
+    # Don't run dane jobs if...
+    - if: '$CI_COMMIT_BRANCH =~ /_qnone/ || $ON_DANE == "OFF"'
+      when: never
+    # Don't run autotest update if...
+    - if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
+      when: never
+    # Report success on success status
+    - if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
+      when: on_success
+    # Report failure on failure status
+    - if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
+      when: on_failure
+    # Always release resource
+    - if: '$CI_JOB_NAME =~ /release_resource/'
+      when: always
+    # Always cleanup
+    - if: '$CI_JOB_NAME =~ /cleanup/'
+      when: always
+    # Default is to run if previous stage succeeded
+    - when: on_success
+
+# Spack helped builds
+# Generic dane build job, extending build script
+.build_and_test_on_dane:
+  extends: [.on_dane]
+  stage: build_and_test
+  script:
+    # THREADS is used by 'tests/gitlab/build_and_test', run below
+    # Dane has 224 threads/node and we run 7 separate jobs: 224=7*32
+    - export THREADS=28
+    - echo ${ALLOC_NAME}
+    - export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
+    - echo ${JOBID}
+    - echo ${MFEM_DATA_DIR}
+    - echo ${SPEC}
+    - srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) --reservation=ci -t 60 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data

.gitlab/configs/lassen-config.yml

@@ -0,0 +1,48 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+# GitLab pipelines configurations for the Lassen machine at LLNL
+variables:
+  MACHINE_NAME: lassen
+
+.on_lassen:
+  tags:
+    - shell
+    - lassen
+  rules:
+    - if: '$CI_COMMIT_BRANCH =~ /_lnone/ || $ON_LASSEN == "OFF"' #run except if ...
+      when: never
+    # Don't run autotest update if...
+    - if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
+      when: never
+    # Report success on success status
+    - if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
+      when: on_success
+    # Report failure on failure status
+    - if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
+      when: on_failure
+    # Always cleanup
+    - if: '$CI_JOB_NAME =~ /cleanup/'
+      when: always
+    - when: on_success
+
+# Lassen uses a different job scheduler (spectrum lsf) that does not allow
+# pre-allocation the same way slurm does.  We use the pci queue on lassen
+# to speed-up the allocation.
+.build_and_test_on_lassen:
+  extends: [.on_lassen]
+  stage: build_and_test
+  script:
+    - echo ${MFEM_DATA_DIR}
+    - echo ${SPEC}
+    # Next script uses 'THREADS': leaving it empty --> it uses 'make all -j'
+    - lalloc 1 -W 45 -q pci --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
+  needs: [setup]

.gitlab/configs/report-build-and-test.yml

@@ -0,0 +1,77 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+# Jobs report
+.report_job_success:
+  script:
+    - echo ${MACHINE_NAME}
+    - echo ${AUTOTEST}
+    - echo ${AUTOTEST_COMMIT}
+    - echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
+    - cd ${AUTOTEST_ROOT}
+    - |
+      (
+        date
+        echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
+        # try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
+        # every 5 seconds; we may want to add a counter for the number of
+        # retries to interrupt a potential infinite loop
+        while ! flock -n 9; do
+          sleep 5
+        done
+        echo "Acquired lock on '$PWD/autotest.lock'"
+        date
+        # Report SUCCESS while holding the file lock on 'autotest.lock'.
+        # The next script uses the following environment variables:
+        # - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
+        # - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
+        # It also calls the script '.gitlab/scripts/safe_create_rundir'.
+        ${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_success
+        err=$?
+        # sleep for a period to allow NFS to propagate the above changes;
+        # clearly, there is no guarantee that other NFS clients will see the
+        # changes even after the timeout
+        sleep 10
+        exit $err
+      ) 9> autotest.lock
+
+.report_job_failure:
+  script:
+    - echo ${MACHINE_NAME}
+    - echo ${AUTOTEST}
+    - echo ${AUTOTEST_COMMIT}
+    - echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
+    - cd ${AUTOTEST_ROOT}
+    - |
+      (
+        date
+        echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
+        # try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
+        # every 5 seconds; we may want to add a counter for the number of
+        # retries to interrupt a potential infinite loop
+        while ! flock -n 9; do
+          sleep 5
+        done
+        echo "Acquired lock on '$PWD/autotest.lock'"
+        date
+        # Report FAILURE while holding the file lock on 'autotest.lock'.
+        # The next script uses the following environment variables:
+        # - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
+        # - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
+        # It also calls the script '.gitlab/scripts/safe_create_rundir'.
+        ${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_failure
+        err=$?
+        # sleep for a period to allow NFS to propagate the above changes;
+        # clearly, there is no guarantee that other NFS clients will see the
+        # changes even after the timeout
+        sleep 10
+        exit $err
+      ) 9> autotest.lock

.gitlab/configs/setup-build-and-test.yml

@@ -0,0 +1,90 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
+# script then symlinks the repo to the parent directory of the MFEM source
+# directory. Unit tests that depend on the mfem/data repo will then detect that
+# this directory is present and be enabled.
+setup:
+  tags:
+    - shell
+    - dane
+  stage: setup
+  variables:
+    GIT_STRATEGY: none
+  script:
+    #
+    # Setup MFEM_DATA_DIR=${SHARED_REPOS_DIR}/mfem-data, see '.gitlab-ci.yml'
+    # and '.gitlab/configs/<machine>-config.yml'
+    #
+    - echo "MACHINE_NAME = ${MACHINE_NAME}"
+    - echo "AUTOTEST = ${AUTOTEST}"
+    - echo "AUTOTEST_COMMIT = ${AUTOTEST_COMMIT}"
+    - echo "SHARED_REPOS_DIR ${SHARED_REPOS_DIR}"
+    - mkdir -p ${SHARED_REPOS_DIR} && cd ${SHARED_REPOS_DIR}
+    - command -v flock || echo "Required command 'flock' not found"
+    - |
+      (
+        date
+        echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
+        # try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
+        # try every 5 seconds; we may want to add a counter for the number of
+        # retries to interrupt a potential infinite loop
+        while ! flock -n 9; do
+          sleep 5
+        done
+        echo "Acquired lock on '$PWD/mfem-data.lock'"
+        date
+        # clone/update the mfem/data repo while holding the file lock on
+        # 'mfem-data.lock'
+        err=0
+        if [[ ! -d "mfem-data" ]]; then
+          git clone ${MFEM_DATA_REPO} "mfem-data"
+        else
+          cd "mfem-data" && git pull && cd ..
+        fi || err=1
+        # sleep for a period to allow NFS to propagate the above changes;
+        # clearly, there is no guarantee that other NFS clients will see the
+        # changes even after the timeout
+        sleep 10
+        exit $err
+      ) 9> mfem-data.lock
+    #
+    # Setup ${AUTOTEST_ROOT}/autotest:
+    #
+    - echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
+    - mkdir -p ${AUTOTEST_ROOT} && cd ${AUTOTEST_ROOT}
+    - |
+      (
+        date
+        echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
+        # try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
+        # every 5 seconds; we may want to add a counter for the number of
+        # retries to interrupt a potential infinite loop
+        while ! flock -n 9; do
+          sleep 5
+        done
+        echo "Acquired lock on '$PWD/autotest.lock'"
+        date
+        # clone/update the autotest repo while holding the file lock on
+        # 'autotest.lock'
+        err=0
+        if [[ ! -d "autotest" ]]; then
+          git clone ${AUTOTEST_REPO}
+        else
+          cd autotest && git pull && cd ..
+        fi || err=1
+        # sleep for a period to allow NFS to propagate the above changes;
+        # clearly, there is no guarantee that other NFS clients will see the
+        # changes even after the timeout
+        sleep 10
+        exit $err
+      ) 9> autotest.lock

.gitlab/corona-build-and-test.yml

@@ -0,0 +1,67 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+stages:
+  - setup
+  - allocate_resource
+  - build_and_test
+  - release_resource_and_report
+
+# Slurm shared allocation
+allocate_resource:
+  variables:
+    GIT_STRATEGY: none
+  extends: .on_corona
+  stage: allocate_resource
+  script:
+    - echo ${ALLOC_NAME}
+    - salloc --exclusive --nodes=1 --partition=mi60 --time=45 --no-shell --job-name=${ALLOC_NAME}
+  timeout: 6h
+  needs: [setup]
+
+# Build and test jobs, simply provide a spec
+rocm_gcc_8.3.1:
+  variables:
+    SPEC: "@develop%gcc@8.3.1+rocm amdgpu_target=gfx906"
+  extends: .build_and_test_on_corona
+  needs: [allocate_resource]
+
+# Release slurm allocation
+release_resource:
+  variables:
+    GIT_STRATEGY: none
+  extends: .on_corona
+  stage: release_resource_and_report
+  script:
+    - echo ${ALLOC_NAME}
+    - export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
+    - echo ${JOBID}
+    - ([[ -n "${JOBID}" ]] && scancel ${JOBID})
+  needs: [rocm_gcc_8.3.1]
+
+# Jobs report
+report_job_success:
+  stage: release_resource_and_report
+  extends:
+    - .on_corona
+    - .report_job_success
+
+report_job_failure:
+  stage: release_resource_and_report
+  extends:
+    - .on_corona
+    - .report_job_failure
+
+include:
+  - local: .gitlab/configs/common.yml
+  - local: .gitlab/configs/corona-config.yml
+  - local: .gitlab/configs/setup-build-and-test.yml
+  - local: .gitlab/configs/report-build-and-test.yml

.gitlab/custom-jobs-and-variables.yml

@@ -1,132 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-include:
-  - project: 'lc-templates/id_tokens'
-    file: 'id_tokens.yml'
-
-# We define the following GitLab pipeline variables:
-variables:
-# Set the build-and-test command.
-# Nested variables are allowed and useful to customize the job command. We
-# protect variables with quotes so that their value may remain a string even if
-# they contain whitespaces.
-  JOB_CMD:
-    value: tests/gitlab/build_and_test --spec \"${SPEC}\" --data-dir ${MFEM_DATA_DIR} --data
-# The path to the shared resource between all jobs in the 'dane-baseline'
-# pipeline. For example, external repositories like 'tests' and 'tpls' are
-# cloned here. Also, 'tpls' is built once for all targets, so that build happens
-# here. The BUILD_ROOT is unique to the pipeline, preventing any form of
-# concurrency with other pipelines. This directory is removed by the 'cleanup'
-# stage in the 'dane-baseline' pipeline.
-  BUILD_ROOT: ${USER_CI_TOP_DIR}/${CI_PROJECT_NAME}-${CI_MACHINE}-pipeline-${CI_PIPELINE_ID}
-
-# On LLNL's dane and tioga, the 'build-and-test' pipelines creates only one
-# allocation shared among jobs in the pipeline in order to save time and
-# resources. This allocation has to be uniquely named so that we are sure to
-# retrieve it and avoid collisions.
-  ALLOC_NAME: ${CI_PROJECT_NAME}_ci_${CI_PIPELINE_ID}
-
-# Git repositories used in the pipelines:
-# - TPLS_REPO and TESTS_REPO are used only by the 'dane-baseline' pipeline
-# - AUTOTEST_REPO is used by all pipelines
-# - MFEM_DATA_REPO is used only by the 'build-and-test' pipelines
-  TPLS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tpls.git
-  TESTS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tests.git
-  AUTOTEST_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/autotest.git
-  MFEM_DATA_REPO: https://github.com/mfem/data.git
-
-# Directory used to place artifacts:
-# - ARTIFACTS_DIR is only used by the 'dane-baseline' pipeline
-  ARTIFACTS_DIR: artifacts
-  SLURM_OVERLAP: 1
-
-# Dane
-# Arguments for top level allocation
-  DANE_SHARED_ALLOC: "--exclusive --reservation=ci --time=60 --nodes=1"
-# Arguments for job level allocation
-# Note: We repeat the reservation, necessary when jobs are manually re-triggered.
-  DANE_JOB_ALLOC: "--reservation=ci --overlap --nodes=1"
-
-# Tioga
-# Arguments for top level allocation
-  TIOGA_SHARED_ALLOC: "--queue=pci --exclusive --time-limit=45m --nodes=1"
-# Arguments for job level allocation
-  TIOGA_JOB_ALLOC: "--nodes=1 --begin-time=+5s"
-
-# Matrix
-# Arguments for top level allocation
-  MATRIX_SHARED_ALLOC: "-p pdebug --exclusive --time=45 --nodes=1 -G 4"
-# Arguments for job level allocation
-# Note: We repeat the reservation, necessary when jobs are manually re-triggered.
-  MATRIX_JOB_ALLOC: "--overlap --nodes=1"
-
-# Configuration shared by build and test jobs specific to this project.
-# Not all configuration can be shared. Here projects can fine tune the
-# CI behavior.
-# See Umpire for an example (export junit test reports).
-.custom_job:
-  artifacts:
-    reports:
-
-# Note: this part is not used by the 'dane-baseline' pipeline.
-# FIXME: BUILD_ROOT, TPLS_REPO, TESTS_REPO are not needed here.
-#        Also, the definition of SHARED_REPOS_DIR is wrong.
-.reproducer_vars:
-  script:
-    - |
-      echo -e "
-      # Variables \n
-      export SPEC=\"${SPEC//\"/\\\"}\" \n
-      # Directories \n
-      export BUILD_ROOT=\"\${working_dir}\" \n
-      export SHARED_REPOS_DIR=\"\${BUILD_ROOT}/..\" \n
-      export MFEM_DATA_DIR=\"\${SHARED_REPOS_DIR}/mfem-data\" \n
-      # Repositories \n
-      export TPLS_REPO=\"${TPLS_REPO//\"/\\\"}\" \n
-      export TESTS_REPO=\"${TESTS_REPO//\"/\\\"}\" \n
-      export AUTOTEST_REPO=\"${AUTOTEST_REPO//\"/\\\"}\" \n
-      export MFEM_DATA_REPO=\"${MFEM_DATA_REPO//\"/\\\"}\" \n
-      # Setup directories \n
-      ./tests/gitlab/build_and_test_setup \n
-      # Using the CI build cache is optional and requires a token. Set it like so: \n
-      # export REGISTRY_TOKEN=\"<your token here>\" \n"
-      #
-
-# Jobs report
-.report_job_success:
-  script:
-    - ${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test SUCCESS
-  rules:
-    - when: on_success
-
-.report_job_failure:
-  script:
-    - ${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test FAILURE
-  rules:
-    - when: on_failure
-
-# Keep the following for debugging purposes: renaming this job from
-# '.show_variables' to 'show_variables' will insert this debug job at the
-# beginning of all child pipelines.
-.show_variables:
-  tags: [shell, oslic]
-  variables:
-    GIT_STRATEGY: none
-  stage: .pre
-  script:
-    - |
-      echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
-      echo "AUTOTEST=${AUTOTEST}"
-      echo "AUTOTEST_COMMIT=${AUTOTEST_COMMIT}"
-      echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
-      # Fail the job on purpose to prevent the rest of the pipeline from running
-      false

.gitlab/dane-baseline.yml

@@ -11,7 +11,6 @@
 
 variables:
   BASELINE_TEST: baseline
-  MACHINE_NAME: dane
 
 stages:
   - setup
@@ -20,25 +19,6 @@ stages:
   - cleanup
   - baseline_publish
 
-.on_dane:
-  tags:
-    - shell
-    - dane
-  rules:
-    # Don't run dane jobs if...
-    - if: '$ON_DANE == "OFF"'
-      when: never
-    # Don't run autotest update if...
-    # Note: in some cases, the content of AUTOTEST can be '${AUTOTEST}', so we
-    # need to treat that value as the default value of 'OFF'.
-    - if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "ON" && $AUTOTEST != "YES"'
-      when: never
-    # Always cleanup
-    - if: '$CI_JOB_NAME =~ /cleanup/'
-      when: always
-    # Default is to run if previous stage succeeded
-    - when: on_success
-
 baselinecheck_mfem_intel_dane:
   extends: [.on_dane]
   stage: baseline_check
@@ -49,9 +29,6 @@ baselinecheck_mfem_intel_dane:
     #       .gitlab/configs/setup-baseline.yml.
     TPLS_DIR: ${BUILD_ROOT}/tpls
   script:
-    - echo "AUTOTEST=$AUTOTEST"
-    - echo "AUTOTEST_COMMIT=$AUTOTEST_COMMIT"
-    - echo "AUTOTEST_ROOT=$AUTOTEST_ROOT"
     - echo ${BUILD_ROOT}
     - echo ${TPLS_DIR}
     # Used by the tests in MFEM/tests, dane has 224 threads/node:
@@ -112,13 +89,7 @@ report_baseline:
           cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
         fi
         msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
-        # Note: in some cases, the content of AUTOTEST_COMMIT can be
-        # '${AUTOTEST_COMMIT}', so we need to treat that value as the default
-        # value of 'ON'.
-        if [[ "$AUTOTEST_COMMIT" == '${AUTOTEST_COMMIT}' ]]; then
-          AUTOTEST_COMMIT="ON"
-        fi
-        if [[ "$AUTOTEST_COMMIT" == "ON" || "$AUTOTEST_COMMIT" == "YES" ]]; then
+        if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
           git pull && \
           git add ${rundir} && \
           git commit -m "${msg}" && \
@@ -146,8 +117,8 @@ baselinepublish_mfem_dane:
   extends: [.on_dane]
   stage: baseline_publish
   rules:
-    # - if: '$CI_COMMIT_BRANCH == "master" || $REBASELINE == "ON"'
-    - if: '$REBASELINE == "ON"'
+    # - if: '$CI_COMMIT_BRANCH == "master" || $REBASELINE == "YES"'
+    - if: '$REBASELINE == "YES"'
       when: manual
   script:
     - echo ${BUILD_ROOT}
@@ -157,5 +128,6 @@ baselinepublish_mfem_dane:
     - .gitlab/scripts/rebaseline
 
 include:
-  - local: .gitlab/custom-jobs-and-variables.yml
+  - local: .gitlab/configs/common.yml
+  - local: .gitlab/configs/dane-config.yml
   - local: .gitlab/configs/setup-baseline.yml

.gitlab/dane-build-and-test.yml

@@ -0,0 +1,94 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+stages:
+  - setup
+  - allocate_resource
+  - build_and_test
+  - release_resource_and_report
+
+# Allocate
+allocate_resource:
+  variables:
+    GIT_STRATEGY: none
+  extends: .on_dane
+  stage: allocate_resource
+  script:
+    - echo ${ALLOC_NAME}
+    - salloc --exclusive --nodes=1 --reservation=ci --time=60 --no-shell --job-name=${ALLOC_NAME}
+  timeout: 6h
+
+# GitLab jobs for the Dane machine at LLNL
+debug_ser_gcc_10:
+  variables:
+    SPEC: "%gcc@10.3.1 +debug~mpi"
+  extends: .build_and_test_on_dane
+
+debug_par_gcc_10:
+  variables:
+    SPEC: "%gcc@10.3.1 +debug+mpi"
+  extends: .build_and_test_on_dane
+
+opt_ser_gcc_10:
+  variables:
+    SPEC: "%gcc@10.3.1 ~mpi"
+  extends: .build_and_test_on_dane
+
+opt_par_gcc_10:
+  variables:
+    SPEC: "%gcc@10.3.1"
+  extends: .build_and_test_on_dane
+
+opt_par_gcc_10_sundials:
+  variables:
+    SPEC: "%gcc@10.3.1 +sundials"
+  extends: .build_and_test_on_dane
+
+opt_par_gcc_10_petsc:
+  variables:
+    SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
+  extends: .build_and_test_on_dane
+
+opt_par_gcc_10_pumi:
+  variables:
+    SPEC: "%gcc@10.3.1 +pumi"
+  extends: .build_and_test_on_dane
+
+# Release
+release_resource:
+  variables:
+    GIT_STRATEGY: none
+  extends: .on_dane
+  stage: release_resource_and_report
+  script:
+    - echo ${ALLOC_NAME}
+    - export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
+    - echo ${JOBID}
+    - ([[ -n "${JOBID}" ]] && scancel ${JOBID})
+
+# Jobs report
+report_job_success:
+  stage: release_resource_and_report
+  extends:
+    - .on_dane
+    - .report_job_success
+
+report_job_failure:
+  stage: release_resource_and_report
+  extends:
+    - .on_dane
+    - .report_job_failure
+
+include:
+  - local: .gitlab/configs/common.yml
+  - local: .gitlab/configs/dane-config.yml
+  - local: .gitlab/configs/setup-build-and-test.yml
+  - local: .gitlab/configs/report-build-and-test.yml

.gitlab/jobs/dane-reports.yml

@@ -1,19 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Jobs report
-report_job_success:
-  extends: [.on_dane, .report_job_success]
-  stage: jobs-stage-3
-
-report_job_failure:
-  extends: [.on_dane, .report_job_failure]
-  stage: jobs-stage-3

.gitlab/jobs/dane.yml

@@ -1,87 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Override reproducer section to define MFEM specific variables.
-.dane_reproducer_vars:
-  script:
-    - !reference [.reproducer_vars, script]
-
-# TODO: Setup script should be defined as a bash script (but then GIT_STRATEGY
-#       cannot be "none" anymore).
-
-# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
-# script then symlinks the repo to the parent directory of the MFEM source
-# directory. Unit tests that depend on the mfem/data repo will then detect that
-# this directory is present and be enabled.
-setup:
-  extends: .on_dane
-  stage: jobs-stage-1
-  script:
-    - ./tests/gitlab/build_and_test_setup
-
-
-########################
-# Overridden shared jobs
-########################
-# When using shared jobs, we can duplicate them here to override description and
-# add necessary changes.
-# We keep ${PROJECT_<MACHINE>_VARIANTS} and ${PROJECT_<MACHINE>_DEPS} So that
-# the comparison with the original job is easier.
-
-
-############
-# Extra jobs
-############
-# We do not recommend using ${PROJECT_<MACHINE>_VARIANTS} and
-# ${PROJECT_<MACHINE>_DEPS} in the extra jobs. There is not reason not to fully
-# describe the spec here.
-
-.mfem_job_on_dane:
-  extends: .job_on_dane
-  stage: jobs-stage-2
-  variables:
-    # Dane has 224 threads/node and we run 7 separate jobs: 224=7*32
-    THREADS: 28
-
-debug_ser_gcc_10:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1 +debug~mpi"
-
-debug_par_gcc_10:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1 +debug+mpi"
-
-opt_ser_gcc_10:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1 ~mpi"
-
-opt_par_gcc_10:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1"
-
-opt_par_gcc_10_sundials:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1 +sundials"
-
-opt_par_gcc_10_petsc:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
-
-opt_par_gcc_10_pumi:
-  extends: .mfem_job_on_dane
-  variables:
-    SPEC: "%gcc@10.3.1 +pumi"

.gitlab/jobs/matrix-reports.yml

@@ -1,19 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Jobs report
-report_job_success:
-  extends: [.on_matrix, .report_job_success]
-  stage: jobs-stage-3
-
-report_job_failure:
-  extends: [.on_matrix, .report_job_failure]
-  stage: jobs-stage-3

.gitlab/jobs/matrix.yml

@@ -1,65 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Override reproducer section to define UMPIRE specific variables.
-.matrix_reproducer_vars:
-  script:
-    - !reference [.reproducer_vars, script]
-
-#TODO: Setup script should be defined as a bash script (but then GIT_STRATEGY cannot be "none" anymore).
-
-# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
-# script then symlinks the repo to the parent directory of the MFEM source
-# directory. Unit tests that depend on the mfem/data repo will then detect that
-# this directory is present and be enabled.
-setup:
-  extends: .on_matrix
-  stage: jobs-stage-1
-  script:
-    - ./tests/gitlab/build_and_test_setup
-
-
-########################
-# Overridden shared jobs
-########################
-# When using shared jobs , we can duplicate them here to override description and add necessary changes.
-# We keep ${PROJECT_<MACHINE>_VARIANTS} and ${PROJECT_<MACHINE>_DEPS} So that
-# the comparison with the original job is easier.
-
-
-############
-# Extra jobs
-############
-# We do not recommend using ${PROJECT_<MACHINE>_VARIANTS} and
-# ${PROJECT_<MACHINE>_DEPS} in the extra jobs. There is not reason not to fully
-# describe the spec here.
-
-.mfem_job_on_matrix:
-  extends: .job_on_matrix
-  stage: jobs-stage-2
-  variables:
-    # We run 2 jobs on 1 node that has 112 threads
-    THREADS: 48
-    # These modules need to be consistent with the uberenv configurations:
-    MODULE_LIST: "gcc/10.3.1-magic cuda/12.9.1"
-
-allocate_resources:
-  timeout: 4h
-
-opt_mpi_cuda_gcc:
-  extends: .mfem_job_on_matrix
-  variables:
-    SPEC: "%gcc@10.3.1 +mpi +cuda cuda_arch=90"
-
-opt_mpi_cuda_hypre_cuda_gcc:
-  extends: .mfem_job_on_matrix
-  variables:
-    SPEC: "%gcc@10.3.1 +mpi +cuda cuda_arch=90 ^hypre+cuda"

.gitlab/jobs/tioga-reports.yml

@@ -1,20 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Jobs report
-report_job_success:
-  extends: [.on_tioga, .report_job_success]
-  stage: jobs-stage-3
-
-report_job_failure:
-  extends: [.on_tioga, .report_job_failure]
-  stage: jobs-stage-3
-

.gitlab/jobs/tioga.yml

@@ -1,70 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# Override reproducer section to define UMPIRE specific variables.
-.tioga_reproducer_vars:
-  script:
-    - !reference [.reproducer_vars, script]
-
-#TODO: Setup script should be defined as a bash script (but then GIT_STRATEGY cannot be "none" anymore).
-
-# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
-# script then symlinks the repo to the parent directory of the MFEM source
-# directory. Unit tests that depend on the mfem/data repo will then detect that
-# this directory is present and be enabled.
-setup:
-  extends: .on_tioga
-  stage: jobs-stage-1
-  script:
-    - ./tests/gitlab/build_and_test_setup
-
-########################
-# Overridden shared jobs
-########################
-# When using shared jobs , we can duplicate them here to override description and add necessary changes.
-# We keep ${PROJECT_<MACHINE>_VARIANTS} and ${PROJECT_<MACHINE>_DEPS} So that
-# the comparison with the original job is easier.
-
-
-############
-# Extra jobs
-############
-# We do not recommend using ${PROJECT_<MACHINE>_VARIANTS} and
-# ${PROJECT_<MACHINE>_DEPS} in the extra jobs. There is not reason not to fully
-# describe the spec here.
-
-# Build and test jobs, simply provide a spec
-
-#.tioga_job_command:
-#  script:
-#    - echo PROXY="${PROXY}"
-#    - echo TIOGA_JOB_ALLOC="${TIOGA_JOB_ALLOC}"
-#    - "printf '#!/bin/bash\n%s\n' \"${JOB_CMD}\" > flux_script.sh"
-#    - cat flux_script.sh
-#    - ${PROXY} flux watch $( ${PROXY} flux batch -o output.stdout.type=kvs ${TIOGA_JOB_ALLOC} flux_script.sh )
-#    - rm -f flux_script.sh
-
-.mfem_job_on_tioga:
-  extends: .job_on_tioga
-  stage: jobs-stage-2
-  variables:
-    # We run 1 job on 1 node that has 64 threads
-    THREADS: 64
-
-opt_mpi_rocm_hypre_rocm:
-  extends: .mfem_job_on_tioga
-  variables:
-    SPEC: "%rocmcc@=6.3.1 +rocm amdgpu_target=gfx90a ^hypre+rocm"
-
-# cce_16_0_1:
-#   extends: .mfem_job_on_tioga
-#   variables:
-#     SPEC: "%cce@=16.0.1"

.gitlab/lassen-build-and-test.yml

@@ -0,0 +1,44 @@
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+stages:
+  - setup
+  - build_and_test
+  - report
+
+opt_mpi_cuda_gcc:
+  variables:
+    SPEC: "%gcc@8.3.1 +mpi +cuda cuda_arch=70"
+  extends: .build_and_test_on_lassen
+
+opt_mpi_cuda_hypre_cuda_gcc:
+  variables:
+    SPEC: "%gcc@8.3.1 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
+  extends: .build_and_test_on_lassen
+
+# Jobs report
+report_job_success:
+  stage: report
+  extends:
+    - .on_lassen
+    - .report_job_success
+
+report_job_failure:
+  stage: report
+  extends:
+    - .on_lassen
+    - .report_job_failure
+
+include:
+  - local: .gitlab/configs/common.yml
+  - local: .gitlab/configs/lassen-config.yml
+  - local: .gitlab/configs/setup-build-and-test.yml
+  - local: .gitlab/configs/report-build-and-test.yml

.gitlab/scripts/baseline

@@ -32,9 +32,11 @@ mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
 
 # run
 if [[ "${MACHINE_NAME}" == "dane" ]]; then
-  salloc --nodes=1 -t 60 --exclusive --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
+  salloc --nodes=1 --exclusive --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
 elif [[ ${MACHINE_NAME} == "corona" ]]; then
   salloc --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
+elif [[ ${MACHINE_NAME} == "lassen" ]]; then
+  lalloc 1 -q pci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
 else
   echo "Unknown machine: MACHINE_NAME=$MACHINE_NAME"
   exit 1

.gitlab/scripts/report_build_and_test

@@ -1,118 +0,0 @@
-#!/bin/bash
-
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-function info_msg ()
-{
-  echo "[Information:] ${1}"
-}
-
-function error_msg ()
-{
-  echo "[Error:] ${1}"
-}
-
-# Perform a report while holding a lock file to prevent concurrency on
-# the destination.
-# Usage:
-# locked_clone <report_function> <lock_name>
-function locked_report ()
-{
-  if ! command -v flock
-  then
-    error_msg "Required command 'flock' not found"
-    exit 1
-  fi
-
-  info_msg "Will report ${1} while holding a lock in ${2}"
-
-  ( date; info_msg "Waiting to acquire lock on '${PWD}/${2}.lock' ..."
-    # try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
-    # try every 5 seconds; we may want to add a counter for the number of
-    # retries to interrupt a potential infinite loop
-    while ! flock -n 9; do sleep 5; done
-    date; info_msg "Acquired lock on '${PWD}/${2}.lock'"
-
-    report ${1}
-    err=$?
-
-    # sleep for a period to allow NFS to propagate the above changes;
-    # clearly, there is no guarantee that other NFS clients will see the
-    # changes even after the timeout
-    sleep 10
-    exit $err
-  ) 9> ${2}.lock
-}
-
-function report ()
-{
-  if [[ "${1}" == "SUCCESS" ]]
-  then
-    info_msg "All the ${MACHINE_NAME} jobs passed"
-    status_msg="The 'build-and-test' jobs on ${MACHINE_NAME} were SUCCESSFUL."
-  elif [[ "${1}" == "FAILURE" ]]
-  then
-    info_msg "At least one failure on ${MACHINE_NAME}"
-    status_msg="Some 'build-and-test' jobs on ${MACHINE_NAME} FAILED."
-  else
-    error_msg "Unknown status: ${1} ... aborting"
-    exit 1
-  fi
-
-  cd ${AUTOTEST_ROOT}/autotest || \
-    { error_msg "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
-  mkdir -p ${MACHINE_NAME}
-
-  rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
-  rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
-
-  printf "%s\n" "${status_msg}" \
-    "Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.err
-
-  msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
-
-  if [[ "${1}" == "FAILURE" ]]
-  then
-    # Create 'autotest-email.html' to indicate failure:
-    cp ${rundir}/gitlab.err ${rundir}/autotest-email.html
-  fi
-
-  # Note: in some cases, the content of AUTOTEST_COMMIT can be
-  # '${AUTOTEST_COMMIT}', so we need to treat that value as the default
-  # value of 'ON'.
-  if [[ "$AUTOTEST_COMMIT" == '${AUTOTEST_COMMIT}' ]]; then
-    AUTOTEST_COMMIT="ON"
-  fi
-  if [[ "$AUTOTEST_COMMIT" == "ON" || "$AUTOTEST_COMMIT" == "YES" ]]; then
-    git pull && \
-    git add ${rundir} && \
-    git commit -m "${msg}" && \
-    ${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
-  else
-    for file in ${rundir}/*; do
-      echo "------------------------------"
-      echo "Content of '$file'"
-      echo "******************************"
-      cat $file
-      echo "******************************"
-    done
-    rm -rf ${rundir} || true
-  fi
-}
-
-export MACHINE_NAME=${CI_MACHINE}
-info_msg "MACHINE_NAME is ${MACHINE_NAME}"
-info_msg "AUTOTEST_ROOT is ${AUTOTEST_ROOT}"
-info_msg "AUTOTEST=$AUTOTEST"
-info_msg "AUTOTEST_COMMIT=$AUTOTEST_COMMIT"
-
-cd ${AUTOTEST_ROOT} && locked_report ${1} autotest

.gitlab/scripts/report_build_and_test_failure

@@ -0,0 +1,45 @@
+#!/bin/bash
+
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+echo "Runs if there was at least one failure on ${MACHINE_NAME}"
+
+cd ${AUTOTEST_ROOT}/autotest || \
+  { echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
+mkdir -p ${MACHINE_NAME}
+
+rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
+rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
+
+printf "%s\n" "Some 'build-and-test' jobs on ${MACHINE_NAME} FAILED." \
+  "Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.err
+
+msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
+
+# Create 'autotest-email.html' to indicate failure:
+cp ${rundir}/gitlab.err ${rundir}/autotest-email.html
+
+if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
+  git pull && \
+  git add ${rundir} && \
+  git commit -m "${msg}" && \
+  ${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
+else
+  for file in ${rundir}/*; do
+    echo "------------------------------"
+    echo "Content of '$file'"
+    echo "******************************"
+    cat $file
+    echo "******************************"
+  done
+  rm -rf ${rundir} || true
+fi

.gitlab/scripts/report_build_and_test_success

@@ -0,0 +1,42 @@
+#!/bin/bash
+
+# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+echo "Can only run if all the ${MACHINE_NAME} jobs passed"
+
+cd ${AUTOTEST_ROOT}/autotest || \
+  { echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
+mkdir -p ${MACHINE_NAME}
+
+rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
+rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
+
+printf "%s\n" "The 'build-and-test' jobs on ${MACHINE_NAME} were SUCCESSFUL." \
+  "Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.out
+
+msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
+
+if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
+  git pull && \
+  git add ${rundir} && \
+  git commit -m "${msg}" && \
+  ${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
+else
+  for file in ${rundir}/*; do
+    echo "------------------------------"
+    echo "Content of '$file'"
+    echo "******************************"
+    cat $file
+    echo "******************************"
+  done
+  rm -rf ${rundir} || true
+fi

.gitlab/subscribed-pipelines.yml

@@ -1,130 +0,0 @@
-# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
-# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
-# LICENSE and NOTICE for details. LLNL-CODE-806117.
-#
-# This file is part of the MFEM library. For more information and source code
-# availability visit https://mfem.org.
-#
-# MFEM is free software; you can redistribute it and/or modify it under the
-# terms of the BSD-3 license. We welcome feedback and contributions, see file
-# CONTRIBUTING.md for details.
-
-# The template job to test whether a machine is up.
-# Expects CI_MACHINE defined to machine name.
-.machine-check:
-  stage: prerequisites
-  tags: [shell, oslic]
-  variables:
-    GIT_STRATEGY: none
-  script:
-    - |
-      if [[ $(jq '.[env.CI_MACHINE].total_nodes_up' /usr/global/tools/lorenz/data/loginnodeStatus) == 0 ]]
-      then
-        echo -e "\e[31mNo node available on ${CI_MACHINE}\e[0m"
-        false && \
-        curl --url "https://api.github.com/repos/${GITHUB_PROJECT_ORG}/${GITHUB_PROJECT_NAME}/statuses/${CI_COMMIT_SHA}" \
-             --header 'Content-Type: application/json' \
-             --header "authorization: Bearer ${GITHUB_TOKEN}" \
-             --data "{ \"state\": \"failure\", \"target_url\": \"${CI_PIPELINE_URL}\", \"description\": \"GitLab ${CI_MACHINE} down\", \"context\": \"ci/gitlab/${CI_MACHINE}\" }"
-        exit 1
-      fi
-
-###
-# Trigger a build-and-test pipeline for a machine.
-# Comment the jobs for machines you don’t need.
-###
-
-# One job to generate the job list for all the subpipelines
-generate-job-lists:
-  stage: prerequisites
-  tags: [shell, oslic]
-  variables:
-    LOCAL_JOBS_PATH: ".gitlab/jobs"
-  script:
-    - |
-      echo "AUTOTEST=$AUTOTEST"
-      echo "AUTOTEST_COMMIT=$AUTOTEST_COMMIT"
-      echo "AUTOTEST_ROOT=$AUTOTEST_ROOT"
-    - |
-      cat ${LOCAL_JOBS_PATH}/dane.yml > dane-jobs.yml
-      if [[ ${AUTOTEST} == "ON" || ${AUTOTEST} == "YES" ]]
-      then
-          cat ${LOCAL_JOBS_PATH}/dane-reports.yml >> dane-jobs.yml
-      fi
-    - |
-      cat ${LOCAL_JOBS_PATH}/matrix.yml > matrix-jobs.yml
-      if [[ ${AUTOTEST} == "ON" || ${AUTOTEST} == "YES" ]]
-      then
-          cat ${LOCAL_JOBS_PATH}/matrix-reports.yml >> matrix-jobs.yml
-      fi
-    - |
-      cat ${LOCAL_JOBS_PATH}/tioga.yml > tioga-jobs.yml
-      if [[ ${AUTOTEST} == "ON" || ${AUTOTEST} == "YES" ]]
-      then
-          cat ${LOCAL_JOBS_PATH}/tioga-reports.yml >> tioga-jobs.yml
-      fi
-  artifacts:
-    paths:
-      - dane-jobs.yml
-      - matrix-jobs.yml
-      - tioga-jobs.yml
-
-
-# DANE
-dane-up-check:
-  variables:
-    CI_MACHINE: "dane"
-  extends: [.machine-check]
-
-dane-build-and-test:
-  variables:
-    CI_MACHINE: "dane"
-  needs: [dane-up-check, generate-job-lists]
-  extends: [.build-and-test]
-
-# DANE, MFEM Specific
-dane-baseline:
-  stage: test-pipelines
-  variables:
-    # Explicitly pass down values that are not always propagated to child
-    # pipelines, e.g. when a variable is set in the "Settings -> CI" web
-    # interface (project variables).
-    # Note: in some cases, this does not work as expected, e.g. when the
-    # variable is not re-defined in the web interface; in such cases, the child
-    # pipeline gets a definition like '${AUTOTEST}', i.e. it behaves as if
-    # AUTOTEST is undefined, even though there is a default value in
-    # .gitlab-ci.yml.
-    AUTOTEST: "${AUTOTEST}"
-    AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
-  trigger:
-    include: .gitlab/dane-baseline.yml
-    strategy: depend
-    forward:
-      pipeline_variables: true
-  needs: [dane-up-check]
-
-
-# TIOGA
-tioga-up-check:
-  variables:
-    CI_MACHINE: "tioga"
-  extends: [.machine-check]
-
-tioga-build-and-test:
-  variables:
-    CI_MACHINE: "tioga"
-  needs: [tioga-up-check, generate-job-lists]
-  extends: [.build-and-test]
-
-
-# Matrix
-matrix-up-check:
-  variables:
-    CI_MACHINE: "matrix"
-  extends: [.machine-check]
-
-matrix-build-and-test:
-  variables:
-    CI_MACHINE: "matrix"
-  needs: [matrix-up-check, generate-job-lists]
-  extends: [.build-and-test]

CHANGELOG

@@ -8,48 +8,9 @@
                                https://mfem.org
 
 
-Version 4.10 (development)
-==========================
-
-Discretization improvements
----------------------------
-- Replaced legacy simplex quadrature rules with symmetric positive-weight
-  rules for triangles (orders 0-25) and tetrahedra (orders 0-20). These
-  rules guarantee all-positive weights and interior quadrature points,
-  improving numerical stability. Higher orders fall back to Grundmann-Moller.
-  Triangle rules: Witherden & Vincent, Comput. Math. Appl. 69(10):1232-1241,
-  2015.
-  Tet rules (d=1-13): Witherden & Vincent (ibid).
-  Tet rules (d=14-20): Chuluunbaatar et al., Comput. Math. Appl. 124:89-97,
-  2022.
-
-
-Version 4.9.1 (development)
+Version 4.8.1 (development)
 ===========================
 
-Discretization improvements
----------------------------
-- Improved the gridfunction projection routines. Projections work for Scalar,
-  Vector and VectorFE, also NURBS versions. Optionally different types of
-  projections can be selected, default behaviour has not changed.
-
-- Added methods to estimate function extremum using piecewise linear bounds +
-  recursive subdivision.
-
-Meshing improvements
---------------------
-- Improved support for 1D NURBS meshes with variable order, including using
-  the patches construct for 1D NURBS meshes.
-
-New and updated examples and miniapps
--------------------------------------
-- Electromagnetics/lorentz miniapp has been updated to leverage the ParticleSet
-  capability.
-
-
-Version 4.9, released on Dec 11, 2025
-=====================================
-
 Starting with this version, MFEM requires a C++17 compiler.
 
 Discretization improvements
@@ -58,199 +19,67 @@ Discretization improvements
   nonlinear finite element operators, based on Enzyme or dual numbers AD at
   quadrature points. These features are part of the new mfem::future namespace
   and some of the API can change in the future. See the new dFEM minimal surface
-  miniapp in the miniapps/dfem/ directory for illustration of dFEM's use. Using
-  Enzyme for AD in MFEM is tested with clang v19 and requires clang/LLVM built
-  with plugin support. See INSTALL for more details.
+  miniapp in the miniapps/dfem/ directory for illustration of dFEM's use.
 
-- Introduced initial support for particle methods in MFEM with new classes
-  Particle, ParticleSet and ParticleVector.
-  * Particle is a convenient interface for individual particle data.
-  * ParticleSet manages and stores particle data in a struct-of-arrays form,
-    carrying particle coordinates and IDs along with an arbitrary number of
-    Vector and integer data for each particle.
-  * ParticleVector is a Vector-derived container that stores vector data for an
-    arbitrary number of particles contiguously based on specified vdim/ordering.
-  See the new particle miniapps in miniapps/gslib/ and miniapps/fluids/navier/.
-
-- Added a new miniapp and specialized AMG solver (AMGF) for optimization-based
-  contact mechanics. The miniapp solves large-scale frictionless contact using a
-  self-contained Interior Point (IP) solver, mortar-based contact constraints
-  provided by Tribol. The resulting linear systems are solved with the new AMGF
-  solver (see below). Benchmark examples include the two-block, ironing, and
-  beam-sphere problems. See the miniapps/contact/ directory.
-
-- Added support for boundary integration to the hyperbolic framework. Two new
-  classes BdrHyperbolicDirichletIntegrator and BoundaryHyperbolicFlowIntegrator
-  have been introduced for implementation of weak Dirichlet boundary conditions
-  with a general flux or for the linear case respectively.
-
-- Added a method to compute piecewise linear bounds on high-order functions on
-  tensor-product elements.
-
-- Added support for interior face integration enabling DG methods in
-  ParMixedBilinearForm, ParNonlinearForm and ParBlockNonlinearForm.
+- Using Enzyme for AD in MFEM is tested with clang v19 and requires clang/LLVM
+  built with plugin support. See INSTALL for more details.
 
 - In the ParMoonolith integration, added support for variational resampling of
   H1 vector fields.
 
-- Introduced IMEX ODE solvers based on a split-operator framework. Added
-  examples ex41 and ex41p demonstrating IMEX DG/CG discretizations of the
-  convection–diffusion equation, with ex41p using DG LOR preconditioning.
-
 Meshing improvements
 --------------------
-- The TMOP kernel hierarchy has been restructured to reduce compilation time.
-  Most large kernels have been split into smaller specific kernels for each
-  metric. The directory structure has been updated with assemble, metrics, mult
-  and tools subdirectories. New kernel dispatch and specialization system has
-  also been integrated. Unit tests have been revised to ensure --all tests pass.
 
-- Introduced NC-patch NURBS meshes, which are conforming element-wise but allow
-  for nonconforming patch topology. This new mesh format supports element
-  spacing formulas for refinement, as well as local refinement factors for a
-  subset of knot vectors.
+- Added support for higher order meshes in Mesh::MakeSimplicial and
+  ParMesh::MakeSimplicial.
 
 - Added a new miniapp for interpolating a surface grid of points in 3D using a
   smooth NURBS surface, that can then be sampled at arbitrary resolution while
   staying close to the original geometry. See miniapps/nurbs/nurbs_surface.
 
-- Parallel anisotropic refinement of hexahedral meshes is now supported,
-  provided that neighboring hexahedra are not refined in conflicting directions.
-  A new ParMesh method is added to check for such conflicts, before refinement.
-
-- Added support for higher order meshes in (Par)Mesh::MakeSimplicial.
-
-Linear and nonlinear solvers
-----------------------------
-- Added FilteredSolver: a base class for solvers with filtering. It handles
-  cases where a solver performs well except in small subspaces, by adding a
-  filtering step formulated as a subspace correction.
-
-- Added AMGFSolver: a derived class of FilteredSolver, specialized for AMG with
-  Filtering (AMGF), providing robust preconditioning for linear systems arising
-  in constrained optimization problems such as frictionless contact.
-
-  Added 'GetResiduals' and 'GetFinalAbsResidualNorm' to 'HyprePCG',
-  'HypreGMRES', and 'HypreFGMRES' to get 'r' and '|r|_p'. Note that the latter
-  computes '|r|_p' from 'r' instead of returning a cached value like the
-  relative 'GetFinalResidualNorm'. These require Hypre >= 2.15.0.
-
-  Changed the default solver parameters for 'HyprePCG' to 'tol=1e-6' and
-  'max_iter=1000'. This matches the default parameters in Hypre 3.0.
-
-  Added various helper functions for querying/modifying Hypre solvers:
-  'HypreSmoother::GetType', 'HypreSmoother::GetSOROptions',
-  'HypreSmoother::GetPolyOptions', 'HypreSmoother::GetWindowParameters',
-  'HypreSmoother::IsOperatorSymmetric', 'HyprePCG::GetTol',
-  'HyprePCG::GetAbsTol', 'HyprePCG::GetMaxIter', 'HyprePCG::SetUseTwoNorm',
-  'HypreGMRES::GetTol', 'HypreGMRES::GetAbsTol', 'HypreGMRES::GetMaxIter',
-  'HypreGMRES::GetKDim', 'HypreFGMRES::GetTol', 'HypreFGMRES::GetMaxIter',
-  'HypreFGMRES::GetKDim', and 'HypreBoomerAMG::GetMaxIter'.
-
 GPU computing
 -------------
-- Added the 'gpu', 'raja-gpu', and 'ceed-gpu' backend aliases/shortcuts which
-  automatically select between CUDA or HIP.
-
-- Added the option to enable GPU-aware MPI in MFEM using the environment
-  variable 'MFEM_GPU_AWARE_MPI' set to any value. Setting this environment
-  variable is an alternative to calling 'Device::SetGPUAwareMPI(true)'.
-
-- Implemented a GPU-accelerated matrix-free AMR derefinement GridFunction update
-  operator. This supports mixed geometry meshes and variable order spaces, and
-  is the default derefinement operator constructed by FiniteElementSpace::Update
-  and ParFiniteElementSpace::Update. The operator requires the finite element
-  space to be nonconforming.
-
-- Introduced MFEM_FOREACH_THREAD_DIRECT, which directly maps loop tasks to GPU
-  threads, assigning one task per thread.
-
 - The function Vector::SetSubVector(const Array<int> &, const real_t) now
   executes on device if either the vector or the array have the device flag
-  set. This is most often used for setting constant essential BCs. A new method,
-  SetSubVectorHost, has been added for cases where host execution is always
-  needed (e.g. when the DOFs array is small).
-
-- Added GPU support in GradientGridFunction and InnerProduct Coefficient classes
-  by implementing their Project methods.
-
-- Added new method: GridFunction::GetGradients, with GPU support, for computing
-  the gradients of a GridFunction on all elements.
-
-- The CUDA-specific names used by some of the unit tests like 'cunit_tests' and
-  'pcunit_tests' were replaced by names using 'gpu' instead of 'c' (short for
-  CUDA) or 'cuda'. These tests automatically run the CUDA/HIP tests based on the
-  MFEM build configuration.
+  set. This is most often used for setting constant essential boundary
+  conditions. A new function Vector::SetSubVectorHost has been added in cases
+  where host execution is always needed (e.g. when the DOFs array is small).
+- Introduced MFEM_FOREACH_THREAD_DIRECT, which directly maps loop tasks to GPU
+  threads, assigning one task per thread.
+- Implemented a GPU-accelerated matrix-free AMR derefinement `GridFunction`
+  update operator. This supports mixed geometry meshes and variable order
+  spaces, and is the default derefinement operator constructed by
+  `FiniteElementSpace::Update` and `ParFiniteElementSpace::Update`.
+  The operator requires `FiniteElementSpace::Nonconforming() == true`.
 
 New and updated examples and miniapps
 -------------------------------------
-- Added the miniapps/fluids directory and moved the previous Navier and the new
-  incompressible Schrödinger flow miniapps into it.
-
-- Introduced the new Incompressible Schrödinger Flow (ISF) miniapp, which models
-  inviscid fluid dynamics by solving the linear Schrödinger equation, leveraging
-  the hydrodynamical analogy to quantum mechanics.
-
-- New particle-related miniapps:
-  * New transient Navier-Stokes fluid-particles solver NavierParticles in
-    miniapps/fluids/navier/navier_particles, for modeling tracer particles in
-    fluid flow, demonstrating use of the new ParticleSet class.
-  * New Navier miniapp, miniapps/fluids/navier/navier_bifurcation, showing the
-    use of NavierParticles in a 2D bifurcating channel flow.
-  * New FindPointsGSLIB miniapp, miniapps/gslib/particles_redist, showing
-    parallel-redistribution of particle data between MPI ranks.
-  * Particle visualization features in common/particles_extras for viewing
-    particle locations and trajectories (ParticleTrajectories) using GLVis.
-
-- Added a new miniapp (meshing/mesh-bounding-boxes) that computes the bounding
-  boxes for each element of a given mesh, and the bounds on the determinant of
-  the Jacobian of the transformation.
-
-- Added a new miniapp (tools/gridfunction-bounds) to compute piecewise linear
-  bounds on a given high-order grid function.
-
-- Added a new miniapp (electromagnetics/lorentz) which computes the trajectory
-  of a charged particle, subject to Lorentz forces, in electrostatic and/or
-  magnetostatic fields as computed by the volta or tesla miniapps.
-
 - Added miniapps to demonstrate an implementation of the absolute-value
-  l1-Jacobi preconditioners in partially assembled operators. This includes
+  L(1)-Jacobi preconditioners in partially assembled operators. This includes
   Multigrid wrapper to demonstrate the effectiveness of these Jacobi-type
-  operators as smoothers. See the miniapps/diag-smoothers/ directory.
-
-- Updated the mtop miniapp with a GPU enabled forward and adjoint solver for
-  isotropic linear elasticity.
-
-Miscellaneous
--------------
-- Introduced MFEM_FETCH_TPLS CMake option to enable downloading, configuring,
-  and building of TPLs alongside MFEM (currently supported TPLs are hypre,
-  METIS, and GSLIB).
-
-- Added quadrature function support to the VisIt and Conduit data collections.
-
-- Added access to the internal parallel matrix in Par(Mixed)BilinearForm and
-  related utility methods for elimination of BCs.
-
-- FindPointsGSLIB has a new constructor that accepts the mesh object and
-  internally calls the Setup() method so users do not have to. The FreeData()
-  method has also been moved to the destructor so users do not need to manually
-  free-up the memory if the destructor is called before MPI_Finalize().
-
-- Added parallel Address Sanitizer, serial and parallel Undefined Behavior
-  Sanitizer and serial Memory Sanitizer GitHub actions tests on Ubuntu.
+  operators as smoothers.
+  These miniapps can be found in `miniapps/diag-smoothers`.
 
 API changes
 -----------
 - mfem::internal::tensor and mfem::internal::dual have been moved to
   mfem::future::tensor and mfem::future::dual.
+- API addition: in class `Operator`, added virtual functions: `AbsMult`, and
+  `AbsMultTranspose`; in class `Vector`, added `Abs` and `Pow`.
 
-- API addition: in class Operator, added virtual functions: AbsMult, and
-  AbsMultTranspose; in class Vector, added Abs and Pow.
-
-- ParBilinearForm::EliminateEssentialVDofsInRhs() has been deprecated in favor
-  of ParallelEliminateEssentialTDofsInRhs().
-
+Miscellaneous
+-------------
+- Added the "gpu", "raja-gpu", and "ceed-gpu" backend aliases/shortcuts which
+  automatically select between CUDA or HIP.
+- The CUDA-specific names used by some of the unit tests like 'cunit_tests' and
+  'pcunit_tests' were replaced by names using 'gpu' instead of 'c' (short for
+  CUDA) or 'cuda'. These tests automatically run the CUDA/HIP tests based on the
+  MFEM build configuration.
+- Added the option to enable GPU-aware MPI in MFEM using the environment
+  variable 'MFEM_GPU_AWARE_MPI' set to any value. Setting this environment
+  variable is an alternative to calling 'Device::SetGPUAwareMPI(true)'.
+- Added parallel Address Sanitizer, serial and parallel Undefined Behavior
+  Sanitizer and serial Memory Sanitizer GitHub actions tests on Ubuntu.
 
 Version 4.8, released on Apr 9, 2025
 ====================================

CMakeLists.txt

@@ -59,7 +59,7 @@ project(mfem NONE)
 # Current version of MFEM, see also `makefile`.
 #   mfem_VERSION = (string)
 #   MFEM_VERSION = (int)   [automatically derived from mfem_VERSION]
-set(${PROJECT_NAME}_VERSION 4.9.1)
+set(${PROJECT_NAME}_VERSION 4.8.1)
 
 # Prohibit in-source build
 if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
@@ -133,49 +133,33 @@ if (MFEM_USE_CUDA)
    if (NOT CMAKE_CUDA_HOST_COMPILER)
       set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
    endif()
-   if (NOT CMAKE_CUDA_ARCHITECTURES)
-      # make CUDA_ARCH resemble the same form as CMAKE_CUDA_ARCHITECTURES
-      string(REPLACE "sm_" "" CUDA_ARCH_TMP "${CUDA_ARCH}")
-      string(REPLACE "," ";" CUDA_ARCH "${CUDA_ARCH_TMP}")
-      set(CMAKE_CUDA_ARCHITECTURES "${CUDA_ARCH}")
+   if (CMAKE_VERSION VERSION_LESS 3.18.0)
+      set(CUDA_FLAGS "-arch=${CUDA_ARCH} ${CUDA_FLAGS}")
+   elseif (NOT CMAKE_CUDA_ARCHITECTURES)
+      string(REGEX REPLACE "^sm_" "" ARCH_NUMBER "${CUDA_ARCH}")
+      if ("${CUDA_ARCH}" STREQUAL "sm_${ARCH_NUMBER}")
+         set(CMAKE_CUDA_ARCHITECTURES "${ARCH_NUMBER}")
+      else()
+         message(FATAL_ERROR "Unknown CUDA_ARCH: ${CUDA_ARCH}")
+      endif()
    else()
       set(CUDA_ARCH "CMAKE_CUDA_ARCHITECTURES: ${CMAKE_CUDA_ARCHITECTURES}")
    endif()
    message(STATUS "Using CUDA architecture: ${CUDA_ARCH}")
    enable_language(CUDA)
    if (CMAKE_VERSION VERSION_LESS 3.18.0)
-      # backup try to detect if this is clang or nvcc
-      if(CMAKE_CUDA_COMPILER MATCHES "nvcc$")
-         # nvcc
-         set(MFEM_CUDA_COMPILER_IS_NVCC ON)
-         set(CUDA_FLAGS "${CUDA_FLAGS} --expt-extended-lambda --expt-relaxed-constexpr")
-         if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
-             OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
-             OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
-            set(CUDA_FLAGS "-arch=${CMAKE_CUDA_ARCHITECTURES} ${CUDA_FLAGS}")
-         else()
-            # build -gencode sequence for multiple architectures
-            foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
-               set(CUDA_FLAGS
-                   "-gencode arch=compute_${ENTRY},code=sm_${ENTRY} ${CUDA_FLAGS}")
-            endforeach()
-         endif()
-      else()
-         # build cuda-gpu-arch sequence for multiple architectures
-         # does not support all/all-major/native
-         foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
-            set(CUDA_FLAGS "-cuda-gpu-arch=sm_${ENTRY} ${CUDA_FLAGS}")
-         endforeach()
-      endif()
+     # backup try to detect if this is clang or nvcc
+     if(CMAKE_CUDA_COMPILER MATCHES "nvcc$")
+       # nvcc
+       set(MFEM_CUDA_COMPILER_IS_NVCC ON)
+       set(CUDA_FLAGS "${CUDA_FLAGS} --expt-extended-lambda --expt-relaxed-constexpr")
+     endif()
    else()
-      # TODO: all, native, all-major require CMake 3.24+
-      # backport support for CMake 3.18 to 3.24
-      if (CMAKE_CUDA_COMPILER_ID STREQUAL "NVIDIA")
-         # nvcc
-         set(MFEM_CUDA_COMPILER_IS_NVCC ON)
-         set(CUDA_FLAGS
-             "${CUDA_FLAGS} --expt-extended-lambda --expt-relaxed-constexpr")
-      endif()
+     if (CMAKE_CUDA_COMPILER_ID STREQUAL "NVIDIA")
+       # nvcc
+       set(MFEM_CUDA_COMPILER_IS_NVCC ON)
+       set(CUDA_FLAGS "${CUDA_FLAGS} --expt-extended-lambda --expt-relaxed-constexpr")
+     endif()
    endif()
    set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD} CACHE STRING
       "CUDA standard to use.")
@@ -258,16 +242,10 @@ endif()
 
 # AMD HIP
 if (MFEM_USE_HIP)
-  if (NOT CMAKE_HIP_ARCHITECTURES)
-    if (HIP_ARCH)
-      set(CMAKE_HIP_ARCHITECTURES CACHE STRING "HIP targets to compile for" "${HIP_ARCH}")
-      set(GPU_TARGETS "${HIP_ARCH}" CACHE STRING "HIP targets to compile for" FORCE)
-    endif()
-  else()
-    set(HIP_ARCH CACHE STRING "HIP targets to compile for" "${CMAKE_HIP_ARCHITECTURES}")
-    set(GPU_TARGETS "${CMAKE_HIP_ARCHITECTURES}" CACHE STRING "HIP targets to compile for" FORCE)
+  if (HIP_ARCH)
+    message(STATUS "Using HIP architecture: ${HIP_ARCH}")
+    set(GPU_TARGETS "${HIP_ARCH}" CACHE STRING "HIP targets to compile for")
   endif()
-  message(STATUS "Using HIP architecture: ${CMAKE_HIP_ARCHITECTURES}")
   if (ROCM_PATH)
     list(INSERT CMAKE_PREFIX_PATH 0 ${ROCM_PATH})
   endif()
@@ -300,22 +278,6 @@ if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
   endif()
 endif()
 
-# Warn user if deprecated FETCH_TPLS is provided
-if (DEFINED FETCH_TPLS)
-  message(STATUS "Setting MFEM_FETCH_TPLS to user-provided value of FETCH_TPLS (i.e., MFEM_FETCH_TPLS=${FETCH_TPLS})")
-  set (MFEM_FETCH_TPLS FETCH_TPLS)
-  message(DEPRECATION "The use of FETCH_TPLS is deprecated and will be removed in future verison. Please use MFEM_FETCH_TPLS instead.")
-endif()
-
-  # Umpire (must be included before hypre, so hypre can use it if needed)
-if (MFEM_USE_UMPIRE)
-   # umpire uses FindCUDA, which needs CMP0146=OLD in CMake >= 3.27
-   if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.27.0)
-      cmake_policy(SET CMP0146 OLD)
-   endif()
-   find_package(UMPIRE REQUIRED)
-endif()
-
 # MPI -> hypre; PETSc (optional)
 if (MFEM_USE_MPI)
   find_package(MPI REQUIRED)
@@ -533,13 +495,14 @@ endif()
 
 # RAJA
 if (MFEM_USE_RAJA)
-   # RAJA uses FindCUDA, which needs CMP0146=OLD in CMake >= 3.27
-   if(CMAKE_VERSION VERSION_GREATER_EQUAL 3.27.0)
-      cmake_policy(SET CMP0146 OLD)
-   endif()
    find_package(RAJA REQUIRED)
 endif()
 
+# UMPIRE
+if (MFEM_USE_UMPIRE)
+   find_package(UMPIRE REQUIRED)
+endif()
+
 # GOOGLE-BENCHMARK
 if (MFEM_USE_BENCHMARK)
    find_package(Benchmark REQUIRED)
@@ -633,7 +596,7 @@ set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
     NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
     ADIOS2 MKL_CPARDISO MKL_PARDISO AMGX MAGMA CUSPARSE CUBLAS CALIPER CODIPACK
     BENCHMARK PARELAG TRIBOL MPI_CXX HIP HIPBLAS HIPSPARSE MOONOLITH BLITZ
-    ALGOIM ENZYME CUDA::cudart)
+    ALGOIM ENZYME)
 
 # Add all created targets and *_FOUND libraries in the variables TPL_TARGETS and
 # TPL_LIBRARIES, respectively.
@@ -651,9 +614,6 @@ foreach(TPL IN LISTS MFEM_TPLS)
     endif()
   endif()
 endforeach(TPL)
-
-# reverse to remove the first instance of entries in TPL_LIBRARIES
-# so later duplicates are kept (for dependency ordering)
 list(REVERSE TPL_LIBRARIES)
 list(REMOVE_DUPLICATES TPL_LIBRARIES)
 list(REVERSE TPL_LIBRARIES)
@@ -725,7 +685,6 @@ set(MFEM_INSTALL_DIR ${CMAKE_INSTALL_PREFIX})
 
 # Declaring the library
 mfem_add_library(mfem ${SOURCES} ${HEADERS} ${MASTER_HEADERS})
-target_compile_features(mfem PUBLIC cxx_std_${CMAKE_CXX_STANDARD})
 # message(STATUS "TPL_LIBRARIES = ${TPL_LIBRARIES}")
 target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES} ${TPL_TARGETS})
 if (TPL_TARGETS)
@@ -872,12 +831,11 @@ add_dependencies(exec
 #  - https://cmake.org/Bug/view.php?id=8438
 
 # Add a target to copy the mfem data directory to the build directory
-# Implementable as a single copy_directory_if_different command w/ CMake >= 3.26
-file(GLOB DATA_FILES CONFIGURE_DEPENDS ${PROJECT_SOURCE_DIR}/data/*)
-add_custom_target(copy_data
-  COMMAND ${CMAKE_COMMAND} -E make_directory data
-  COMMAND ${CMAKE_COMMAND} -E copy_if_different ${DATA_FILES} data
-  COMMENT "Syncing the data directory ...")
+add_custom_command(OUTPUT data_is_copied
+  COMMAND ${CMAKE_COMMAND} -E copy_directory ${PROJECT_SOURCE_DIR}/data data
+  COMMAND ${CMAKE_COMMAND} -E touch data_is_copied
+  COMMENT "Copying the data directory ...")
+add_custom_target(copy_data DEPENDS data_is_copied)
 # Add 'copy_data' as a prerequisite for all executables, if the source and the
 # build directories are not the same.
 if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
@@ -1009,15 +967,9 @@ install(FILES
 install(EXPORT ${PROJECT_NAME_UC}Targets
     DESTINATION ${INSTALL_CMAKE_DIR})
 
-# Install the data directory if present, i.e. if the copy_data target is built
-install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/data
-  DESTINATION ${MFEM_INSTALL_DIR} OPTIONAL)
-
 #-------------------------------------------------------------------------------
 # Create 'config.mk' from 'config.mk.in' for the build and install locations and
 # define install rules for 'config.mk' and 'test.mk'
 #-------------------------------------------------------------------------------
-if (MFEM_USE_CUDA OR MFEM_USE_HIP)
-  option(MFEM_EXPORT_GPU_CONFIG "Export config.mk for GPU-enabled downstream packages" ON)
-endif()
+
 mfem_export_mk_files()

CONTRIBUTING.md

@@ -129,10 +129,6 @@ The MFEM source code has the following structure:
   │   ├── moonolith
   │   ├── qinterp
   │   └── tmop
-  │   |   ├── assemble
-  │   |   ├── metrics
-  │   |   ├── mult
-  │   |   └── tools
   ├── general
   ├── linalg
   │   ├── batched
@@ -143,19 +139,16 @@ The MFEM source code has the following structure:
   │   ├── adjoint
   │   ├── autodiff
   │   ├── common
-  │   ├── contact
   │   ├── dfem
   │   ├── dpg
   │   ├── electromagnetics
-  │   ├── fluids
-  │   │   ├── navier
-  │   │   └── schrodinger-flow
   │   ├── gslib
   │   ├── hdiv-linear-solver
   │   ├── hooke
   │   ├── meshing
   │   ├── mtop
   │   ├── multidomain
+  │   ├── navier
   │   ├── nurbs
   │   ├── parelag
   │   ├── performance

INSTALL

@@ -123,7 +123,7 @@ Parallel build:
 
 Parallel build with fetching of hypre and METIS:
    mkdir <mfem-buil-dir> ; cd <mfem-build-dir>
-   cmake <mfem-source-dir> -DMFEM_USE_MPI=YES -DMFEM_FETCH_TPLS=YES
+   cmake <mfem-source-dir> -DMFEM_USE_MPI=YES -DFETCH_TPLS=YES
    make -j 4
 
 CUDA build:
@@ -725,9 +725,7 @@ The specific libraries and their options are:
   URL: https://ginkgo-project.github.io
   Options: GINKGO_OPT, GINKGO_LIB, GINKGO_DIR, GINKGO_BUILD_TYPE (Release or
            Debug).
-  Versions: Ginkgo >= 1.9.0. When building Ginkgo with distributed support, a
-            recent version of the "develop" branch is required (1.11 as defined
-            in include/ginkgo/config.hpp).
+  Versions: Ginkgo >= 1.9.0.
 
 - AmgX (optional), used when MFEM_USE_AMGX = YES.
   URL: https://github.com/NVIDIA/AMGX
@@ -861,7 +859,7 @@ The specific libraries and their options are:
   URL: https://github.com/CEED/libCEED
        https://ceed.exascaleproject.org/libceed
   Options: CEED_DIR, CEED_OPT, CEED_LIB.
-  Versions: libCEED >= 0.12.0.
+  Versions: libCEED >= 0.12.
 
 - RAJA (optional), used when MFEM_USE_RAJA = YES.
   Beginning with MFEM v4.5.1, only RAJA v2022.10.3+ is supported.
@@ -1083,10 +1081,9 @@ The following options are CMake specific:
 MFEM_ENABLE_TESTING  - Enable the ctest framework for testing.
 MFEM_ENABLE_EXAMPLES - Build all of the examples by default.
 MFEM_ENABLE_MINIAPPS - Build all of the miniapps by default.
-MFEM_FETCH_TPLS      - Enable fetching of all supported third-party libraries.
-MFEM_FETCH_GSLIB     - Enable fetching of gslib.
-MFEM_FETCH_HYPRE     - Enable fetching of hypre.
-MFEM_FETCH_METIS     - Enable fetching of metis.
+FETCH_TPLS           - Enable fetching of all supported third-party libraries.
+HYPRE_FETCH          - Enable fetching of hypre.
+METIS_FETCH          - Enable fetching of metis.
 
 External libraries (CMake):
 ---------------------------
@@ -1152,7 +1149,6 @@ The MFEM CMake build system also provides fetching (automated building) for the
 packages/libraries listed below. Note that when fetching is enabled, any related
 auto-detection functionality is disabled.
 
- - GSLIB
  - HYPRE
  - METIS
 

config/cmake/MFEMConfig.cmake.in

@@ -84,31 +84,6 @@ set_and_check(MFEM_LIBRARY_DIR "@PACKAGE_LIB_INSTALL_DIR@")
 
 check_required_components(MFEM)
 
-include(CMakeFindDependencyMacro)
-
-if (MFEM_USE_CUDA)
-  # required for projects linking to MFEM+CUDA, even if they don't use CUDA directly
-  find_dependency(CUDAToolkit)
-endif (MFEM_USE_CUDA)
-
-if (MFEM_USE_HIP)
-  # hip/rocm uses the modern MFEM way of linking to targets, need to find dependencies
-  find_dependency(HIP)
-  find_dependency(HIPBLAS)
-  find_dependency(HIPSPARSE)
-  if (MFEM_USE_MPI)
-    # assume HYPRE uses HIP
-    # alternatively could check HYPRE_USING_HIP
-    find_dependency(rocsparse)
-    find_dependency(rocrand)
-    find_dependency(rocsolver)
-  endif (MFEM_USE_MPI)
-endif (MFEM_USE_HIP)
-
-if (MFEM_USE_RAJA)
-   find_dependency(RAJA)
-endif()
-
 if (NOT TARGET mfem)
   include(${CMAKE_CURRENT_LIST_DIR}/MFEMTargets.cmake)
 endif (NOT TARGET mfem)

config/cmake/modules/FindGSLIB.cmake

@@ -9,47 +9,10 @@
 # terms of the BSD-3 license. We welcome feedback and contributions, see file
 # CONTRIBUTING.md for details.
 
-# Defines the following variables if fetching of TPLs is disabled (default):
+# Defines the following variables:
 #   - GSLIB_FOUND
 #   - GSLIB_LIBRARIES
 #   - GSLIB_INCLUDE_DIRS
-# otherwise, the following are defined:
-#   - GSLIB (imported library target)
-
-if (MFEM_FETCH_GSLIB OR MFEM_FETCH_TPLS)
-  enable_language(C)
-  string(TOUPPER "${CMAKE_BUILD_TYPE}" BUILD_TYPE)
-  set(GSLIB_FETCH_VERSION 1.0.9)
-  set(GSLIB_C_FLAGS ${CMAKE_C_FLAGS_${BUILD_TYPE}})
-  if (CMAKE_C_FLAGS)
-    set(GSLIB_C_FLAGS "${CMAKE_C_FLAGS} ${CMAKE_C_FLAGS_${BUILD_TYPE}}")
-  endif()
-  if (BUILD_SHARED_LIBS)
-    set(GSLIB_C_FLAGS "${GSLIB_C_FLAGS} -fPIC")
-  endif()
-  add_library(GSLIB STATIC IMPORTED)
-  # define external project and create future include directory so it is present
-  # to pass CMake checks at end of MFEM configuration step
-  message(STATUS "Will fetch GSLIB ${GSLIB_FETCH_VERSION} to be built with ${GSLIB_C_FLAGS}")
-  set(PREFIX ${CMAKE_BINARY_DIR}/fetch/gslib)
-  include(ExternalProject)
-  ExternalProject_Add(gslib
-    GIT_REPOSITORY https://github.com/Nek5000/gslib
-    GIT_TAG v${GSLIB_FETCH_VERSION}
-    GIT_SHALLOW TRUE
-    UPDATE_DISCONNECTED TRUE
-    PREFIX ${PREFIX}
-    CONFIGURE_COMMAND ""
-    BUILD_COMMAND cd ${PREFIX}/src/gslib && $(MAKE) clean && $(MAKE) DESTDIR=${PREFIX} MPI=$<BOOL:${MFEM_USE_MPI}> "CFLAGS= ${GSLIB_C_FLAGS}"
-    INSTALL_COMMAND "")
-  file(MAKE_DIRECTORY ${PREFIX}/include)
-  # set imported library target properties
-  add_dependencies(GSLIB gslib)
-  set_target_properties(GSLIB PROPERTIES
-    IMPORTED_LOCATION ${PREFIX}/lib/libgs.a
-    INTERFACE_INCLUDE_DIRECTORIES ${PREFIX}/include)
-  return()
-endif()
 
 include(MfemCmakeUtilities)
 mfem_find_package(GSLIB GSLIB GSLIB_DIR "include" gslib.h "lib" gs

config/cmake/modules/FindHYPRE.cmake

@@ -27,7 +27,6 @@ if (HYPRE_FOUND OR TARGET HYPRE)
   if (HYPRE_USING_HIP)
     find_package(rocsparse REQUIRED)
     find_package(rocrand REQUIRED)
-    find_package(rocsolver REQUIRED)
   endif()
   if (HYPRE_LIBRARIES AND HYPRE_INCLUDE_DIRS AND HYPRE_VERSION)
     find_package_handle_standard_args(HYPRE
@@ -37,92 +36,52 @@ if (HYPRE_FOUND OR TARGET HYPRE)
   endif()
 endif()
 
-if (MFEM_FETCH_HYPRE OR MFEM_FETCH_TPLS)
+if (HYPRE_FETCH OR FETCH_TPLS)
   set(HYPRE_FETCH_VERSION 2.33.0)
-  set(HYPRE_FETCH_TAG "v${HYPRE_FETCH_VERSION}" CACHE STRING "Tag, branch, or commit for HYPRE")
   add_library(HYPRE STATIC IMPORTED)
   # set options and associated dependencies
-  set(HYPRE_CMAKE_OPTIONS "")
-  list(APPEND HYPRE_CMAKE_OPTIONS -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE})
-  # collect all HYPRE_ENABLE variables and pass them to hypre, assuming they are BOOL.
-  get_cmake_property(all_vars VARIABLES)
-  foreach(var ${all_vars})
-    if(var MATCHES "^HYPRE_ENABLE")
-      list(APPEND HYPRE_CMAKE_OPTIONS "-D${var}:BOOL=${${var}}")
-    endif()
-  endforeach()
-  # process all MFEM_USE variables that impact hypre
+  set(CMAKE_OPTIONS)
+  list(APPEND CMAKE_OPTIONS -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE})
   if (MFEM_USE_CUDA)
-    list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_CUDA:BOOL=ON -DCMAKE_CUDA_ARCHITECTURES:STRING=${CMAKE_CUDA_ARCHITECTURES})
+    list(APPEND CMAKE_OPTIONS -DHYPRE_WITH_CUDA:BOOL=ON)
     find_package(CUDAToolkit REQUIRED)
     target_link_libraries(HYPRE INTERFACE CUDA::cusparse CUDA::curand CUDA::cublas)
   elseif (MFEM_USE_HIP)
-    list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_HIP:BOOL=ON)
+    list(APPEND CMAKE_OPTIONS -DHYPRE_WITH_HIP:BOOL=ON)
     find_package(rocsparse REQUIRED)
     find_package(rocrand REQUIRED)
     target_link_libraries(HYPRE INTERFACE rocsparse rocrand)
   endif()
-  if (MFEM_USE_CUDA OR MFEM_USE_HIP)
-    if (MFEM_USE_UMPIRE)
-      if (EXISTS ${umpire_DIR})
-        list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_UMPIRE:BOOL=ON -Dumpire_DIR:PATH=${umpire_DIR})
-      else()
-        message(FATAL_ERROR "MFEM_USE_UMPIRE=ON, however umpire_DIR isn't visible to HYPRE")
-      endif()
-    else()
-      list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_UMPIRE:BOOL=OFF)
-      message(WARNING
-"================================================================================
- Umpire is disabled while building HYPRE with GPU support.
- This is not recommended for performance reasons!
- Consider enabling Umpire with -DMFEM_USE_UMPIRE=ON and providing -DUMPIRE_DIR.
-================================================================================")
-    endif()
-  endif()
   if (MFEM_USE_SINGLE)
-    list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_SINGLE:BOOL=ON)
+    list(APPEND CMAKE_OPTIONS -DHYPRE_ENABLE_SINGLE:BOOL=ON)
   endif()
   # define external project and create future include directory so it is present
   # to pass CMake checks at end of MFEM configuration step
-  message(STATUS "Will fetch HYPRE ${HYPRE_FETCH_TAG} to be built with ${HYPRE_CMAKE_OPTIONS}")
-  set(HYPRE_INSTALL ${CMAKE_BINARY_DIR}/fetch/hypre)
+  message(STATUS "Will fetch HYPRE ${HYPRE_FETCH_VERSION} to be built with ${CMAKE_OPTIONS}")
+  set(PREFIX ${CMAKE_BINARY_DIR}/fetch/hypre)
   include(ExternalProject)
   ExternalProject_Add(hypre
     GIT_REPOSITORY https://github.com/hypre-space/hypre.git
-    GIT_TAG ${HYPRE_FETCH_TAG}
+    GIT_TAG v${HYPRE_FETCH_VERSION}
     GIT_SHALLOW TRUE
-    GIT_PROGRESS TRUE
     UPDATE_DISCONNECTED TRUE
     SOURCE_SUBDIR src
-    PREFIX ${HYPRE_INSTALL}
-    BUILD_COMMAND ${CMAKE_COMMAND} --build . -- -j${CMAKE_BUILD_PARALLEL_LEVEL}
-    CMAKE_CACHE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${HYPRE_INSTALL} -DCMAKE_INSTALL_LIBDIR:PATH=lib ${HYPRE_CMAKE_OPTIONS})
-  file(MAKE_DIRECTORY ${HYPRE_INSTALL}/include)
+    PREFIX ${PREFIX}
+    CMAKE_CACHE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${PREFIX} -DCMAKE_INSTALL_LIBDIR:PATH=lib ${CMAKE_OPTIONS})
+  file(MAKE_DIRECTORY ${PREFIX}/include)
   # set imported library target properties
   add_dependencies(HYPRE hypre)
   set_target_properties(HYPRE PROPERTIES
-    IMPORTED_LOCATION ${HYPRE_INSTALL}/lib/libHYPRE.a
-    INTERFACE_INCLUDE_DIRECTORIES ${HYPRE_INSTALL}/include)
+    IMPORTED_LOCATION ${PREFIX}/lib/libHYPRE.a
+    INTERFACE_INCLUDE_DIRECTORIES ${PREFIX}/include)
   # convert HYPRE version to integer
-  if (HYPRE_FETCH_TAG MATCHES "^v?([0-9]+)\\.([0-9]+)\\.([0-9]+)$")
-    # Exact release tag X.Y.Z
-    string(REGEX MATCHALL "[0-9]+" HYPRE_SPLIT_VERSION "${HYPRE_FETCH_TAG}")
-  elseif (HYPRE_FETCH_VERSION MATCHES "([0-9]+)\\.([0-9]+)(\\.([0-9]+))?")
-    string(REGEX MATCHALL "[0-9]+" HYPRE_SPLIT_VERSION "${HYPRE_FETCH_VERSION}")
-  else (NOT DEFINED HYPRE_VERSION)
-    message(FATAL_ERROR "Unable to find HYPRE release version. Please provide it via -DHYPRE_VERSION")
-  endif()
-  if (HYPRE_SPLIT_VERSION AND NOT DEFINED HYPRE_VERSION)
-    list(GET HYPRE_SPLIT_VERSION 0 HYPRE_MAJOR_VERSION)
-    list(GET HYPRE_SPLIT_VERSION 1 HYPRE_MINOR_VERSION)
-    if (HYPRE_SPLIT_VERSION GREATER 2)
-      list(GET HYPRE_SPLIT_VERSION 2 HYPRE_PATCH_VERSION)
-    else()
-      set(HYPRE_PATCH_VERSION 0)
-    endif()
-    math(EXPR HYPRE_VERSION "10000*${HYPRE_MAJOR_VERSION} + 100*${HYPRE_MINOR_VERSION} + ${HYPRE_PATCH_VERSION}")
-    set(HYPRE_VERSION ${HYPRE_VERSION} CACHE STRING "HYPRE version." FORCE)
-  endif()
+  string(REGEX MATCHALL "[0-9]+" HYPRE_SPLIT_VERSION ${HYPRE_FETCH_VERSION})
+  list(GET HYPRE_SPLIT_VERSION 0 HYPRE_MAJOR_VERSION)
+  list(GET HYPRE_SPLIT_VERSION 1 HYPRE_MINOR_VERSION)
+  list(GET HYPRE_SPLIT_VERSION 2 HYPRE_PATCH_VERSION)
+  math(EXPR HYPRE_VERSION "10000*${HYPRE_MAJOR_VERSION} + 100*${HYPRE_MINOR_VERSION} + ${HYPRE_PATCH_VERSION}")
+  # set cache variables that would otherwise be set after mfem_find_package call
+  set(HYPRE_VERSION ${HYPRE_VERSION} CACHE STRING "HYPRE version." FORCE)
   return()
 endif()
 
@@ -190,8 +149,7 @@ endif()
 if (HYPRE_FOUND AND HYPRE_USING_HIP)
   find_package(rocsparse REQUIRED)
   find_package(rocrand REQUIRED)
-  find_package(rocsolver REQUIRED)
-  list(APPEND HYPRE_LIBRARIES ${rocsparse_LIBRARIES} ${rocrand_LIBRARIES} roc::rocsolver roc::rocblas)
+  list(APPEND HYPRE_LIBRARIES ${rocsparse_LIBRARIES} ${rocrand_LIBRARIES})
   set(HYPRE_LIBRARIES ${HYPRE_LIBRARIES} CACHE STRING
       "HYPRE libraries + dependencies." FORCE)
   message(STATUS "Updated HYPRE_LIBRARIES: ${HYPRE_LIBRARIES}")

config/cmake/modules/FindMETIS.cmake

@@ -18,7 +18,7 @@
 #   - METIS (imported library target)
 #   - METIS_VERSION_5 (cache variable)
 
-if (MFEM_FETCH_METIS OR MFEM_FETCH_TPLS)
+if (METIS_FETCH OR FETCH_TPLS)
   set(METIS_FETCH_VERSION 4.0.3)
   add_library(METIS STATIC IMPORTED)
   # define external project
@@ -32,7 +32,6 @@ if (MFEM_FETCH_METIS OR MFEM_FETCH_TPLS)
     UPDATE_DISCONNECTED TRUE
     PREFIX ${PREFIX}
     CONFIGURE_COMMAND tar -xzf ../metis/metis-${METIS_FETCH_VERSION}-mac.tgz --strip=1
-    BUILD_COMMAND $(MAKE) COPTIONS=-Wno-incompatible-pointer-types
     INSTALL_COMMAND mkdir -p ${PREFIX}/lib && cp libmetis.a ${PREFIX}/lib/)
   # set imported library target properties
   add_dependencies(METIS metis)

config/cmake/modules/MfemCmakeUtilities.cmake

@@ -701,6 +701,7 @@ endfunction(mfem_find_library)
 # Extract compile and link options needed by the given target.
 #
 function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
+
   if (NOT TARGET ${Target})
     return()
   endif()
@@ -717,7 +718,7 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
   get_target_property(IsImported ${tgt} IMPORTED)
   # message(STATUS "${tgt}[IMPORTED]: ${IsImported}")
   # Generally, the possible target types are: STATIC_LIBRARY, MODULE_LIBRARY,
-  # SHARED_LIBRARY, INTERFACE_LIBRARY, UNKNOWN_LIBRARY, EXECUTABLE.
+  # SHARED_LIBRARY, INTERFACE_LIBRARY, EXECUTABLE.
   get_target_property(type ${tgt} TYPE)
   # message(STATUS "${tgt}[TYPE]: ${type}")
   unset(ImportConfig)
@@ -765,7 +766,7 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
     else()
       message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
     endif()
-  elseif ("${type}" STREQUAL "SHARED_LIBRARY" OR "${type}" STREQUAL "UNKNOWN_LIBRARY")
+  elseif ("${type}" STREQUAL "SHARED_LIBRARY")
     get_target_property(Location ${tgt} LOCATION)
     if (Location)
       get_filename_component(Dir ${Location} DIRECTORY)
@@ -798,12 +799,7 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
           # message(STATUS "Lib = ${Lib}")
           # Filter-out generator expressions
           if (NOT ("${Lib}" MATCHES "^\\$"))
-            if(NOT ("${Lib}" STREQUAL "dl"))
-              list(APPEND LinkOpts "${Lib}")
-            else()
-              # for some reason libdl doesn't include the "-l"
-              list(APPEND LinkOpts "-ldl")
-            endif()
+            list(APPEND LinkOpts "${Lib}")
           endif()
         else()
           mfem_get_target_options(${Lib} COpts LOpts)
@@ -892,18 +888,9 @@ function(mfem_export_mk_files)
       set(${var} NO)
     endif()
   endforeach()
-  if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
-    set(MFEM_CXX ${CMAKE_CUDA_COMPILER})
-    if(MFEM_CUDA_COMPILER_IS_NVCC)
-      set(MFEM_HOST_CXX ${CMAKE_CUDA_HOST_COMPILER})
-    else()
-      set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
-    endif()
-  else()
-    # mfem doesn't use enable_language(HIP)
-    set(MFEM_CXX ${CMAKE_CXX_COMPILER})
-    set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
-  endif()
+  # TODO: Add support for MFEM_USE_CUDA=YES
+  set(MFEM_CXX ${CMAKE_CXX_COMPILER})
+  set(MFEM_HOST_CXX ${MFEM_CXX})
   set(MFEM_CPPFLAGS "")
   get_target_property(cxx_std mfem CXX_STANDARD)
   # For now, we ignore the setting of the CXX_EXTENSIONS property. If this
@@ -913,50 +900,6 @@ function(mfem_export_mk_files)
   string(STRIP
          "${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
          MFEM_CXXFLAGS)
-  if(MFEM_EXPORT_GPU_CONFIG)
-    if (MFEM_USE_CUDA)
-      set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} ${CMAKE_CUDA_FLAGS}")
-      if (MFEM_CUDA_COMPILER_IS_NVCC)
-        set(MFEM_CXXFLAGS "-x=cu ${MFEM_CXXFLAGS} -ccbin ${CMAKE_CXX_COMPILER} --forward-unknown-to-host-compiler")
-        # The following intentionally hides CUDA deprecation warnings
-        foreach(ENTRY IN LISTS CUDAToolkit_INCLUDE_DIRS)
-          set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -isystem ${ENTRY}")
-        endforeach()
-        if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
-          # architecture flags not part of CMAKE_CUDA_FLAGS
-          if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
-              OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
-              OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
-            set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -arch=${CMAKE_CUDA_ARCHITECTURES}")
-          else()
-            foreach (ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
-              set(MFEM_CXXFLAGS
-                "${MFEM_CXXFLAGS} -gencode arch=compute_${ENTRY},code=sm_${ENTRY}")
-            endforeach()
-          endif()
-        endif()
-      else()
-        set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xcuda --cuda-path=${CUDAToolkit_LIBRARY_ROOT}")
-        if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
-          # architecture flags not part of CMAKE_CUDA_FLAGS
-          if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
-              OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
-              OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
-            # TODO: not supported
-          else()
-            foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
-              set(MFEM_CXXFLAGS "-cuda-gpu-arch=sm_${ENTRY} ${MFEM_CXXFLAGS}")
-            endforeach()
-          endif()
-        endif()
-      endif()
-    elseif (MFEM_USE_HIP)
-      set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xhip")
-      foreach(ENTRY IN LISTS CMAKE_HIP_ARCHITECTURES)
-        set(MFEM_CXXFLAGS "--offload-arch=${ENTRY} ${MFEM_CXXFLAGS}")
-      endforeach()
-    endif()
-  endif()
   set(MFEM_TPLFLAGS "")
   foreach(dir ${TPL_INCLUDE_DIRS})
     set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
@@ -987,26 +930,14 @@ function(mfem_export_mk_files)
     set(MFEM_SHARED NO)
     set(MFEM_STATIC YES)
   endif()
-  if (MFEM_USE_CUDA)
-    set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} -lcudart")
-  endif()
   set(MFEM_BUILD_TAG "${CMAKE_SYSTEM}")
   set(MFEM_PREFIX "${CMAKE_INSTALL_PREFIX}")
-  # For the next 4 variables, these are the values for the build-tree version of
+  # For the next 4 variable, these are the values for the build-tree version of
   # 'config.mk'
   set(MFEM_INC_DIR "${PROJECT_BINARY_DIR}")
   set(MFEM_LIB_DIR "${PROJECT_BINARY_DIR}")
   set(MFEM_TEST_MK "${PROJECT_SOURCE_DIR}/config/test.mk")
   set(MFEM_CONFIG_EXTRA "MFEM_BUILD_DIR ?= ${PROJECT_BINARY_DIR}")
-  if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
-    if (MFEM_CUDA_COMPILER_IS_NVCC)
-      set(MFEM_XLINKER "-Xlinker=")
-    else()
-      set(MFEM_XLINKER "${CMAKE_CUDA_LINKER_WRAPPER_FLAG}")
-    endif()
-  else()
-    set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
-  endif()
   set(MFEM_MPIEXEC ${MPIEXEC})
   if (NOT MFEM_MPIEXEC)
     set(MFEM_MPIEXEC "mpirun")
@@ -1054,21 +985,16 @@ function(mfem_export_mk_files)
     # handle interfaces (e.g., SCOREC::apf)
     if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*" OR "${lib}" MATCHES "ParMoonolith::.*")
     elseif (TARGET "${lib}")
-      mfem_get_target_options(${lib} CompileOpts2 LinkOpts2)
-      # remove generator expressions
-      string(GENEX_STRIP "${CompileOpts2}" CompileOpts)
-      string(GENEX_STRIP "${LinkOpts2}" LinkOpts)
+      mfem_get_target_options(${lib} CompileOpts LinkOpts)
       # Removing duplicates may lead to issues:
       # list(REMOVE_DUPLICATES CompileOpts)
       # list(REMOVE_DUPLICATES LinkOpts)
-      # message(WARNING "${lib}[LinkOpts]: ${LinkOpts}")      
-      # message(WARNING "${lib}[CompileOpts]: ${CompileOpts}")
-      foreach(LOpt IN LISTS LinkOpts)
-        set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpt}")
-      endforeach()
-      foreach(COpt IN LISTS CompileOpts)
-        set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpt}")
-      endforeach()
+      string(REPLACE ";" " " COpts "${CompileOpts}")
+      string(REPLACE ";" " " LOpts "${LinkOpts}")
+      # message(STATUS "${lib}[COpts]: '${COpts}'")
+      # message(STATUS "${lib}[LOpts]: '${LOpts}'")
+      set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpts}")
+      set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpts}")
       # message(FATAL_ERROR "***** interface lib found ... exiting *****")
       # handle static and shared libs
     elseif ("${suffix}" STREQUAL "${CMAKE_SHARED_LIBRARY_SUFFIX}")
@@ -1076,7 +1002,7 @@ function(mfem_export_mk_files)
       get_filename_component(fullLibName ${lib} NAME_WE)
       string(REGEX REPLACE "^lib" "" libname ${fullLibName})
       set(MFEM_EXT_LIBS
-        "${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
+          "${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
     else()
       set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${lib}")
     endif()
@@ -1085,7 +1011,7 @@ function(mfem_export_mk_files)
   # Create the build-tree version of 'config.mk'
   configure_file(
     "${PROJECT_SOURCE_DIR}/config/config.mk.in"
-    "${PROJECT_BINARY_DIR}/config/config.mk" @ONLY)
+    "${PROJECT_BINARY_DIR}/config/config.mk")
   # Copy 'test.mk' from the source-tree to the build-tree
   configure_file(
     "${PROJECT_SOURCE_DIR}/config/test.mk"
@@ -1103,7 +1029,7 @@ function(mfem_export_mk_files)
   # Create the install-tree version of 'config.mk'
   configure_file(
     "${PROJECT_SOURCE_DIR}/config/config.mk.in"
-    "${PROJECT_BINARY_DIR}/config/config-install.mk" @ONLY)
+    "${PROJECT_BINARY_DIR}/config/config-install.mk")
 
   # Install rules for 'config.mk' and 'test.mk'
   install(FILES ${PROJECT_SOURCE_DIR}/config/test.mk

config/config.mk.in

@@ -88,7 +88,6 @@ MFEM_BUILD_TAG = @MFEM_BUILD_TAG@
 MFEM_PREFIX    = @MFEM_PREFIX@
 MFEM_INC_DIR   = @MFEM_INC_DIR@
 MFEM_LIB_DIR   = @MFEM_LIB_DIR@
-MFEM_XLINKER   = @MFEM_XLINKER@
 
 # Location of test.mk
 MFEM_TEST_MK = @MFEM_TEST_MK@

config/defaults.cmake

@@ -91,10 +91,9 @@ option(MFEM_ENABLE_BENCHMARKS "Build all of the benchmarks" OFF)
 
 # Allow a user to specify fetching of certain third-party libraries instead of
 # searching for existing installations.
-option(MFEM_FETCH_TPLS "Enable fetching of all supported third-party libraries" OFF)
-option(MFEM_FETCH_GSLIB "Enable fetching of GSLIB" OFF)
-option(MFEM_FETCH_HYPRE "Enable fetching of hypre" OFF)
-option(MFEM_FETCH_METIS "Enable fetching of METIS" OFF)
+option(FETCH_TPLS "Enable fetching of all supported third-party libraries" OFF)
+option(HYPRE_FETCH "Enable fetching of hypre" OFF)
+option(METIS_FETCH "Enable fetching of METIS" OFF)
 
 # Setting CXX/MPICXX on the command line or in user.cmake will overwrite the
 # autodetected C++ compiler.

config/defaults.mk

@@ -18,7 +18,6 @@
 # Some choices below are based on the OS type:
 NOTMAC := $(subst Darwin,,$(shell uname -s))
 
-ASTYLE_BIN = astyle
 ETAGS_BIN = $(shell command -v etags 2> /dev/null)
 EGREP_BIN = $(shell command -v egrep 2> /dev/null)
 
@@ -58,7 +57,7 @@ CUDA_DIR = $(or $(CUDA_HOME),$(patsubst %/,%,$(dir \
 CLANG_CUDA_FLAGS = -xcuda --cuda-path=$(CUDA_DIR) --cuda-gpu-arch=$(CUDA_ARCH)
 # flags for nvcc
 NVCC_FLAGS = -x=cu --expt-extended-lambda --expt-relaxed-constexpr \
- -arch=$(CUDA_ARCH) -isystem "$(CUDA_DIR)/include"
+ -arch=$(CUDA_ARCH)
 # Prefixes for passing flags to the host compiler and linker when using
 # CUDA_CXX=nvcc
 CUDA_XCOMPILER = -Xcompiler=
@@ -408,7 +407,7 @@ AMGX_LIB = -L$(AMGX_DIR)/lib -lamgx -lcusparse -lcusolver -lcublas -lnvToolsExt
 # MAGMA library configuration
 MAGMA_DIR = @MFEM_DIR@/../magma
 MAGMA_OPT = -I$(MAGMA_DIR)/include
-MAGMA_LIB = -L$(MAGMA_DIR)/lib -l:libmagma.a $(LAPACK_LIB)
+MAGMA_LIB = -L$(MAGMA_DIR)/lib -l:libmagma.a -lcublas -lcusparse $(LAPACK_LIB)
 
 # GnuTLS library configuration
 GNUTLS_OPT =

config/docker/README.md

@@ -101,7 +101,7 @@ $ cd ../miniapps
 $ ls
 CMakeLists.txt  common            meshing  nurbs        shifted  toys
 adjoint         electromagnetics  mtop     parelag      solvers
-autodiff        gslib             fluids   performance  tools
+autodiff        gslib             navier   performance  tools
 ```
 
 And an example in "toys"

config/sample-runs.sh

@@ -85,10 +85,6 @@ groups_serial=(
    "DPG miniapps:"
    "miniapps/dpg"
    "{acoustics,convection-diffusion,diffusion,maxwell}.cpp"'
-'"isf"
-   "Schrodinger flow miniapps:"
-   "miniapps/fluids/schrodinger-flow"
-   "schrodinger_flow.cpp"'
 '"gslib"
    "GSLIB miniapps:"
    "miniapps/gslib"
@@ -170,10 +166,6 @@ groups_parallel=(
    "miniapps/electromagnetics"
    "joule.cpp"'
 #   "{joule,maxwell,tesla,volta}.cpp"' # todo: multiline sample runs
-'"isf"
-   "Schrodinger flow miniapps:"
-   "miniapps/fluids/schrodinger-flow"
-   "pschrodinger_flow.cpp"'
 '"adjoint"
    "Adjoint miniapps:"
    "miniapps/adjoint"
@@ -199,7 +191,7 @@ groups_parallel=(
 # todo: miniapps/multidomain
 '"navier"
    "Navier miniapps:"
-   "miniapps/fluids/navier"
+   "miniapps/navier"
    "navier_cht.cpp"'
 # todo: add other navier miniapps
 '"nurbs"
@@ -289,10 +281,6 @@ groups_all=(
    "miniapps/electromagnetics"
    "joule.cpp"'
 #   "{joule,maxwell,tesla,volta}.cpp"' # todo: multiline sample runs
-'"isf"
-   "Schrodinger flow miniapps:"
-   "miniapps/fluids/schrodinger-flow"
-   "{,p}schrodinger_flow.cpp"'
 '"adjoint"
    "Adjoint miniapps:"
    "miniapps/adjoint"
@@ -320,7 +308,7 @@ groups_all=(
 # todo: miniapps/multidomain
 '"navier"
    "Navier miniapps:"
-   "miniapps/fluids/navier"
+   "miniapps/navier"
    "navier_cht.cpp"'
 # todo: add other navier miniapps
 '"nurbs"

data/channel-bifurcation-2d.mesh

@@ -1,156 +0,0 @@
-MFEM mesh v1.0
-
-#
-# MFEM Geometry Types (see fem/geom.hpp):
-#
-# POINT       = 0
-# SEGMENT     = 1
-# TRIANGLE    = 2
-# SQUARE      = 3
-# TETRAHEDRON = 4
-# CUBE        = 5
-# PRISM       = 6
-# PYRAMID     = 7
-#
-
-dimension
-2
-
-elements
-25
-3 3 0 1 2 3
-3 3 1 4 5 2
-3 3 4 6 7 5
-3 3 6 8 9 7
-3 3 8 10 11 9
-3 3 10 12 13 11
-3 3 12 14 15 13
-3 3 14 16 17 15
-3 3 16 18 19 17
-3 3 18 20 21 19
-3 3 20 22 23 21
-3 3 22 24 25 23
-3 3 24 26 27 25
-3 3 26 28 29 27
-3 3 28 30 31 29
-3 3 30 32 33 31
-3 3 32 34 35 33
-3 3 17 19 36 37
-3 3 37 36 38 39
-3 3 39 38 40 41
-3 3 41 40 42 43
-3 3 43 42 44 45
-3 3 45 44 46 47
-3 3 47 46 48 49
-3 3 49 48 50 51
-
-boundary
-52
-2 1 0 1
-2 1 2 3
-1 1 3 0
-2 1 1 4
-2 1 5 2
-2 1 4 6
-2 1 7 5
-2 1 6 8
-2 1 9 7
-2 1 8 10
-2 1 11 9
-2 1 10 12
-2 1 13 11
-2 1 12 14
-2 1 15 13
-2 1 14 16
-2 1 17 15
-2 1 16 18
-2 1 18 20
-2 1 21 19
-2 1 20 22
-2 1 23 21
-2 1 22 24
-2 1 25 23
-2 1 24 26
-2 1 27 25
-2 1 26 28
-2 1 29 27
-2 1 28 30
-2 1 31 29
-2 1 30 32
-2 1 33 31
-2 1 32 34
-3 1 34 35
-2 1 35 33
-2 1 19 36
-2 1 37 17
-2 1 36 38
-2 1 39 37
-2 1 38 40
-2 1 41 39
-2 1 40 42
-2 1 43 41
-2 1 42 44
-2 1 45 43
-2 1 44 46
-2 1 47 45
-2 1 46 48
-2 1 49 47
-2 1 48 50
-4 1 50 51
-2 1 51 49
-
-vertices
-52
-2
-0 0
-1 0
-1 1
-0 1
-2 0
-2 1
-3 0
-3 1
-4 0
-4 1
-5 0
-5 1
-6 0
-6 1
-7 0
-7 1
-8 0
-8 1
-9 0
-9 1
-10 0
-10 1
-11 0
-11 1
-12 0
-12 1
-13 0
-13 1
-14 0
-14 1
-15 0
-15 1
-16 0
-16 1
-17 0
-17 1
-9 2
-8 2
-9 3
-8 3
-9 4
-8 4
-9 5
-8 5
-9 6
-8 6
-9 7
-8 7
-9 8
-8 8
-9 9
-8 9

data/mfem.mesh

@@ -1,593 +0,0 @@
-MFEM mesh v1.0
-
-# Created by: Pointwise
-
-# MFEM Geometry Types:
-#
-# POINT       = 0
-# SEGMENT     = 1
-# TRIANGLE    = 2
-# SQUARE      = 3
-# TETRAHEDRON = 4
-# CUBE        = 5
-# PRISM       = 6
-
-dimension
-2
-
-elements
-160
-1 3 1 164 163 0
-1 3 164 165 162 163
-1 3 2 166 164 1
-1 3 166 132 165 164
-1 3 3 167 166 2
-1 3 167 131 132 166
-1 3 4 168 167 3
-1 3 168 130 131 167
-1 3 5 169 168 4
-1 3 169 129 130 168
-1 3 6 170 169 5
-1 3 170 128 129 169
-1 3 171 172 170 6
-1 3 172 127 128 170
-1 3 124 125 172 171
-1 3 125 126 127 172
-1 3 162 165 173 161
-1 3 165 132 133 173
-1 3 161 173 174 160
-1 3 173 133 134 174
-1 3 160 174 175 159
-1 3 174 134 135 175
-1 3 6 7 176 171
-1 3 7 8 177 176
-1 3 171 176 123 124
-1 3 176 177 122 123
-1 3 159 175 178 158
-1 3 175 135 136 178
-1 3 158 178 179 157
-1 3 178 136 137 179
-1 3 157 179 180 156
-1 3 179 137 138 180
-1 3 122 177 181 121
-1 3 177 8 182 181
-1 3 8 9 183 182
-1 3 9 10 184 183
-1 3 10 11 185 184
-1 3 11 12 186 185
-1 3 12 13 187 186
-1 3 13 14 15 187
-1 3 121 181 119 120
-1 3 181 182 118 119
-1 3 182 183 117 118
-1 3 183 184 188 117
-1 3 184 185 109 188
-1 3 185 186 108 109
-1 3 186 187 189 108
-1 3 187 15 16 189
-1 3 109 110 190 188
-1 3 110 111 191 190
-1 3 111 112 113 191
-1 3 188 190 116 117
-1 3 190 191 115 116
-1 3 191 113 114 115
-1 3 189 192 107 108
-1 3 192 193 106 107
-1 3 193 194 105 106
-1 3 194 195 104 105
-1 3 195 196 103 104
-1 3 16 17 192 189
-1 3 17 18 193 192
-1 3 18 19 194 193
-1 3 19 20 195 194
-1 3 20 21 196 195
-1 3 97 98 197 96
-1 3 98 99 198 197
-1 3 99 100 199 198
-1 3 100 101 200 199
-1 3 101 102 201 200
-1 3 102 103 202 201
-1 3 103 196 203 202
-1 3 196 21 22 203
-1 3 96 197 204 95
-1 3 197 198 39 204
-1 3 198 199 38 39
-1 3 199 200 205 38
-1 3 200 201 32 205
-1 3 201 202 31 32
-1 3 202 203 206 31
-1 3 203 22 23 206
-1 3 32 33 207 205
-1 3 33 34 35 207
-1 3 205 207 37 38
-1 3 207 35 36 37
-1 3 39 40 208 204
-1 3 40 41 209 208
-1 3 41 42 210 209
-1 3 42 43 211 210
-1 3 43 44 212 211
-1 3 204 208 94 95
-1 3 208 209 93 94
-1 3 209 210 92 93
-1 3 210 211 91 92
-1 3 211 212 90 91
-1 3 90 212 213 89
-1 3 212 44 214 213
-1 3 44 45 215 214
-1 3 45 46 216 215
-1 3 46 47 217 216
-1 3 47 48 218 217
-1 3 48 49 219 218
-1 3 49 50 51 219
-1 3 89 213 87 88
-1 3 213 214 86 87
-1 3 214 215 85 86
-1 3 215 216 84 85
-1 3 216 217 83 84
-1 3 217 218 82 83
-1 3 218 219 220 82
-1 3 219 51 52 220
-1 3 53 221 220 52
-1 3 221 81 82 220
-1 3 54 222 221 53
-1 3 222 80 81 221
-1 3 55 223 222 54
-1 3 223 79 80 222
-1 3 26 27 224 25
-1 3 27 28 29 224
-1 3 25 224 225 24
-1 3 224 29 30 225
-1 3 24 225 206 23
-1 3 225 30 31 206
-1 3 154 155 226 153
-1 3 155 156 180 226
-1 3 153 226 227 152
-1 3 226 180 138 227
-1 3 152 227 228 151
-1 3 227 138 139 228
-1 3 151 228 229 150
-1 3 228 139 140 229
-1 3 150 229 230 149
-1 3 229 140 141 230
-1 3 149 230 231 148
-1 3 230 141 142 231
-1 3 148 231 232 147
-1 3 231 142 143 232
-1 3 147 232 145 146
-1 3 232 143 144 145
-1 3 56 233 223 55
-1 3 233 78 79 223
-1 3 57 234 233 56
-1 3 234 77 78 233
-1 3 58 235 234 57
-1 3 235 76 77 234
-1 3 61 236 59 60
-1 3 236 235 58 59
-1 3 62 237 236 61
-1 3 237 76 235 236
-1 3 63 238 237 62
-1 3 238 75 76 237
-1 3 64 239 238 63
-1 3 239 74 75 238
-1 3 65 240 239 64
-1 3 240 73 74 239
-1 3 66 241 240 65
-1 3 241 72 73 240
-1 3 67 242 241 66
-1 3 242 71 72 241
-1 3 68 69 242 67
-1 3 69 70 71 242
-
-boundary
-164
-3 1 0 1
-3 1 1 2
-3 1 2 3
-3 1 3 4
-3 1 4 5
-3 1 5 6
-3 1 6 7
-3 1 7 8
-3 1 8 9
-3 1 9 10
-3 1 10 11
-3 1 11 12
-3 1 12 13
-3 1 13 14
-3 1 16 17
-3 1 17 18
-3 1 18 19
-3 1 19 20
-3 1 20 21
-3 1 21 22
-3 1 22 23
-3 1 23 24
-3 1 24 25
-3 1 25 26
-3 1 26 27
-3 1 27 28
-3 1 28 29
-3 1 29 30
-3 1 30 31
-3 1 31 32
-3 1 32 33
-3 1 33 34
-3 1 34 35
-3 1 35 36
-3 1 36 37
-3 1 37 38
-3 1 38 39
-3 1 39 40
-3 1 40 41
-3 1 41 42
-3 1 42 43
-3 1 43 44
-3 1 49 50
-3 1 48 49
-3 1 47 48
-3 1 46 47
-3 1 45 46
-3 1 44 45
-3 1 52 53
-3 1 53 54
-3 1 54 55
-3 1 57 58
-3 1 56 57
-3 1 55 56
-3 1 60 61
-3 1 61 62
-3 1 62 63
-3 1 63 64
-3 1 64 65
-3 1 65 66
-3 1 66 67
-3 1 67 68
-3 1 75 76
-3 1 74 75
-3 1 73 74
-3 1 72 73
-3 1 71 72
-3 1 70 71
-3 1 76 77
-3 1 77 78
-3 1 78 79
-3 1 81 82
-3 1 80 81
-3 1 79 80
-3 1 82 83
-3 1 83 84
-3 1 84 85
-3 1 85 86
-3 1 86 87
-3 1 87 88
-3 1 94 95
-3 1 93 94
-3 1 92 93
-3 1 91 92
-3 1 90 91
-3 1 96 97
-3 1 95 96
-3 1 97 98
-3 1 98 99
-3 1 99 100
-3 1 100 101
-3 1 101 102
-3 1 102 103
-3 1 107 108
-3 1 106 107
-3 1 105 106
-3 1 104 105
-3 1 103 104
-3 1 108 109
-3 1 109 110
-3 1 110 111
-3 1 111 112
-3 1 112 113
-3 1 113 114
-3 1 114 115
-3 1 115 116
-3 1 116 117
-3 1 119 120
-3 1 118 119
-3 1 117 118
-3 1 131 132
-3 1 130 131
-3 1 129 130
-3 1 128 129
-3 1 127 128
-3 1 126 127
-3 1 132 133
-3 1 133 134
-3 1 134 135
-3 1 137 138
-3 1 136 137
-3 1 135 136
-3 1 138 139
-3 1 139 140
-3 1 140 141
-3 1 141 142
-3 1 142 143
-3 1 143 144
-3 1 147 148
-3 1 146 147
-3 1 153 154
-3 1 152 153
-3 1 151 152
-3 1 150 151
-3 1 149 150
-3 1 148 149
-3 1 156 157
-3 1 157 158
-3 1 158 159
-3 1 161 162
-3 1 160 161
-3 1 159 160
-2 1 69 70
-2 1 68 69
-3 1 88 89
-3 1 89 90
-3 1 121 122
-3 1 120 121
-3 1 123 124
-3 1 122 123
-3 1 125 126
-3 1 124 125
-1 1 144 145
-1 1 145 146
-3 1 15 16
-3 1 14 15
-3 1 50 51
-3 1 51 52
-3 1 59 60
-3 1 58 59
-3 1 154 155
-3 1 155 156
-3 1 163 0
-3 1 162 163
-
-vertices
-243
-2
-4 4
-4 3.5
-4 3
-4 2.5
-4 2
-4 1.5
-4 1
-4.5 1
-5 1
-5 1.5
-5 2
-5 2.5
-5 3
-5 3.5
-5 4
-5.500 4
-6 4
-6.500 4
-7 4
-7.5 4
-8 4
-8.5 4
-9 4
-9.5 4
-10 4
-10.5 4
-11 4
-11 3.5
-11 3
-10.5 3
-10 3
-9.5 3
-9.5 2.5
-10 2.5
-10.5 2.5
-10.5 2
-10.5 1.5
-10 1.5
-9.5 1.5
-9.5 1
-10 1
-10.5 1
-11 1
-11.5 1
-12 1
-12 1.5
-12 2
-12 2.5
-12 3
-12 3.5
-12 4
-12.5 4
-13 4
-13.333 3.75
-13.666 3.5
-14.000 3.25
-14.333 3.5
-14.666 3.75
-15.000 4
-15.500 4
-16.000 4
-16.000 3.5
-16.000 3
-16.000 2.5
-16.000 2
-16.000 1.5
-16.000 1
-16.000 0.5
-16.000 0
-15.500 0
-15.000 0
-15.000 0.5000000000000002
-15.000 1
-15.000 1.5
-15.000 2
-15.000 2.5
-15.000 3
-14.666 2.75
-14.333 2.5
-14.000 2.25
-13.666 2.5
-13.333 2.75
-13 3
-13 2.5
-13 2
-13 1.5
-13 1
-13 0.500
-13 0
-12.5 0
-12 0
-11.5 0
-11 0
-10.5 0
-10 0
-9.5 0
-9 0
-8.5 0
-8.5 0.5
-8.5 1
-8.5 1.5
-8.5 2
-8.5 2.5
-8.5 3
-8 3
-7.5 3
-7 3
-6.500 3
-6 3
-6 2.5
-6.5 2.5
-7 2.5
-7.5 2.5
-7.5 2
-7.5 1.5
-7.000 1.5
-6.5 1.5
-6 1.5
-6 1
-6 0.5
-6 0
-5.5 0
-5 0
-4.5 0
-4 0
-3.5 0
-3 0
-3 0.500
-3 1
-3 1.5
-3 2
-3 2.5
-3 3
-2.666 2.75
-2.333 2.5
-2.000 2.25
-1.666 2.5
-1.333 2.75
-1.000 3
-1.000 2.5
-1.000 2
-1.000 1.5
-1.000 1
-1.000 0.5000
-1.000 0
-0.5000 0
-0.0000 0
-0.0000 0.5
-0.0000 1
-0.0000 1.5
-0.0000 2
-0.0000 2.5
-0.0000 3
-0.0000 3.5
-0.0000 4
-0.5000 4
-1.000 4
-1.333 3.75
-1.666 3.5
-2.000 3.25
-2.333 3.5
-2.666 3.75
-3 4
-3.5 4
-3.5 3.5
-3 3.5
-3.5 3
-3.5 2.5
-3.5 2
-3.5 1.5
-3.5 1
-4 0.5
-3.5 0.5
-2.666 3.25
-2.333 3
-2.000 2.75
-4.5 0.5
-5 0.5
-1.666 3
-1.333 3.25
-1.000 3.5
-5.5 0.5
-5.500 1
-5.500 1.5
-5.500 2
-5.500 2.5
-5.500 3
-5.500 3.5
-6 2
-6 3.5
-6.5 2
-7 2
-6.5 3.5
-7 3.5
-7.5 3.5
-8 3.5
-8.5 3.5
-9 0.5
-9 1
-9 1.5
-9 2
-9 2.5
-9 3
-9 3.5
-9.5 0.5
-9.5 2
-9.5 3.5
-10 2
-10 0.5
-10.5 0.5
-11 0.5
-11.5 0.5
-12 0.5
-12.5 0.500
-12.5 1
-12.5 1.5
-12.5 2
-12.5 2.5
-12.5 3
-12.5 3.5
-13 3.5
-13.333 3.250
-13.666 3
-14.000 2.75
-10.5 3.5
-10 3.5
-0.500 3.5
-0.500 3
-0.500 2.5
-0.500 2
-0.500 1.5
-0.500 1
-0.500 0.5
-14.333 3
-14.666 3.25
-15.000 3.5
-15.500 3.5
-15.500 3
-15.500 2.5
-15.500 2
-15.500 1.5
-15.500 1
-15.500 0.5

data/nc-nurbs3d.mesh

@@ -1,342 +0,0 @@
-MFEM NURBS NC-patch mesh v1.0
-dimension
-3
-
-elements
-13
-0 1 5 0 8 10 11 9 4 6 7 5
-0 1 5 0 18 8 24 32 30 23 36 38
-0 1 5 0 0 18 32 14 12 30 38 29
-0 1 5 0 32 24 10 20 38 36 26 35
-0 1 5 0 14 32 20 2 29 38 35 16
-0 1 5 0 30 23 36 38 31 22 37 39
-0 1 5 0 12 30 38 29 13 31 39 28
-0 1 5 0 38 36 26 35 39 37 27 34
-0 1 5 0 29 38 35 16 28 39 34 17
-0 1 5 0 31 22 37 39 19 9 25 33
-0 1 5 0 13 31 39 28 1 19 33 15
-0 1 5 0 39 37 27 34 33 25 11 21
-0 1 5 0 28 39 34 17 15 33 21 3
-
-boundary
-31
-9999 3 8 10 6 4
-9999 3 10 11 7 6
-9999 3 11 9 5 7
-9999 3 9 8 4 5
-9999 3 4 6 7 5
-9999 3 32 24 8 18
-9999 3 18 8 23 30
-9999 3 14 32 18 0
-9999 3 0 18 30 12
-9999 3 14 0 12 29
-9999 3 20 10 24 32
-9999 3 10 20 35 26
-9999 3 2 20 32 14
-9999 3 20 2 16 35
-9999 3 2 14 29 16
-9999 3 30 23 22 31
-9999 3 12 30 31 13
-9999 3 29 12 13 28
-9999 3 26 35 34 27
-9999 3 35 16 17 34
-9999 3 16 29 28 17
-9999 3 31 22 9 19
-9999 3 19 9 25 33
-9999 3 13 31 19 1
-9999 3 28 13 1 15
-9999 3 1 19 33 15
-9999 3 27 34 21 11
-9999 3 33 25 11 21
-9999 3 34 17 3 21
-9999 3 17 28 15 3
-9999 3 15 33 21 3
-
-vertex_to_knotspan
-8
-23 0 1 8 10 11 9
-22 0 2 8 10 11 9
-24 1 0 8 10 11 9
-36 1 1 8 10 11 9
-37 1 2 8 10 11 9
-25 1 3 8 10 11 9
-26 2 1 8 10 11 9
-27 2 2 8 10 11 9
-
-coordinates
-40
-3
-0 0 0
-0 1 0
-4 0 0
-4 1 0
-0 0 4
-0 1 4
-4 0 4
-4 1 4
-0 0 2
-0 1 2
-4 0 2
-4 1 2
-0 0.333333333333333 0
-0 0.666666666666667 0
-2 0 0
-2 1 0
-4 0.333333333333334 0
-4 0.666666666666667 0
-0 0 1
-0 1 1
-4 0 1
-4 1 1
-0 0.666666666666667 2
-0 0.333333333333333 2
-2 0 2
-2 1 2
-4 0.333333333333333 2
-4 0.666666666666667 2
-2 0.666666666666667 0
-2 0.333333333333333 0
-0 0.333333333333333 1
-0 0.666666666666667 1
-1.81325211007895 0 1
-1.81325211007895 1 1
-4 0.666666666666667 1
-4 0.333333333333333 1
-2 0.333333333333333 2
-2 0.666666666666667 2
-1.81325211007895 0.333333333333333 1
-1.81325211007895 0.666666666666667 1
-
-edges
-87
-0 8 10
-1 10 11
-0 9 11
-1 8 9
-0 4 6
-1 6 7
-0 5 7
-1 4 5
-2 4 8
-2 6 10
-2 7 11
-2 5 9
-9 18 8
-7 8 24
-9 32 24
-7 18 32
-9 30 23
-7 23 36
-9 38 36
-7 30 38
-3 18 30
-3 8 23
-3 24 36
-3 32 38
-8 0 18
-8 14 32
-7 0 14
-8 12 30
-8 29 38
-7 12 29
-3 0 12
-3 14 29
-6 24 10
-9 20 10
-6 32 20
-6 36 26
-9 35 26
-6 38 35
-3 10 26
-3 20 35
-8 2 20
-6 14 2
-8 16 35
-6 29 16
-3 2 16
-9 31 22
-7 22 37
-9 39 37
-7 31 39
-4 30 31
-4 23 22
-4 36 37
-4 38 39
-8 13 31
-8 28 39
-7 13 28
-4 12 13
-4 29 28
-6 37 27
-9 34 27
-6 39 34
-4 26 27
-4 35 34
-8 17 34
-6 28 17
-4 16 17
-9 19 9
-7 9 25
-9 33 25
-7 19 33
-5 31 19
-5 22 9
-5 37 25
-5 39 33
-8 1 19
-8 15 33
-7 1 15
-5 13 1
-5 28 15
-6 25 11
-9 21 11
-6 33 21
-5 27 11
-5 34 21
-8 3 21
-6 15 3
-5 17 3
-
-knotvectors
-10
-1 3 0 0 0.5 1 1
-1 4 0 0 0.333333333333333 0.666666666666667 1 1
-1 3 0 0 0.5 1 1
-1 2 0 0 1 1
-1 2 0 0 1 1
-1 2 0 0 1 1
-1 2 0 0 1 1
-1 2 0 0 1 1
-1 2 0 0 1 1
-1 2 0 0 1 1
-
-spacing
-0
-
-weights
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-
-FiniteElementSpace
-FiniteElementCollection: NURBS1
-VDim: 3
-Ordering: 1
-
-0 0 0
-0 1 0
-4 0 0
-4 1 0
-0 0 4
-0 1 4
-4 0 4
-4 1 4
-0 0 2
-0 1 2
-4 0 2
-4 1 2
-0 0.333333333333333 0
-0 0.666666666666667 0
-2 0 0
-2 1 0
-4 0.333333333333334 0
-4 0.666666666666667 0
-0 0 1
-0 1 1
-4 0 1
-4 1 1
-0 0.666666666666667 2
-0 0.333333333333333 2
-2 0 2
-2 1 2
-4 0.333333333333333 2
-4 0.666666666666667 2
-2 0.666666666666667 0
-2 0.333333333333333 0
-0 0.333333333333333 1
-0 0.666666666666667 1
-1.81325211007895 0 1
-1.81325211007895 1 1
-4 0.666666666666667 1
-4 0.333333333333333 1
-2 0.333333333333333 2
-2 0.666666666666667 2
-1.81325211007895 0.333333333333333 1
-1.81325211007895 0.666666666666667 1
-2 0 4
-4 0.333333333333333 4
-4 0.666666666666667 4
-2 1 4
-0 0.333333333333333 4
-0 0.666666666666667 4
-0 0 3
-4 0 3
-4 1 3
-0 1 3
-2 0 3
-4 0.333333333333333 3
-4 0.666666666666667 3
-2 1 3
-0 0.666666666666667 3
-0 0.333333333333333 3
-2 0.333333333333333 4
-2 0.666666666666667 4
-2 0.333333333333333 3
-2 0.666666666666667 3

data/nc3-nurbs.mesh

@@ -1,96 +0,0 @@
-MFEM NURBS NC-patch mesh v1.0
-dimension
-2
-
-# rank attr geom ref_type nodes/children
-elements
-3
-0 1 3 0 0 4 5 1
-0 1 3 0 6 7 4 2
-0 1 3 0 6 3 5 7
-
-# attr geom nodes
-boundary
-7
-1 1 0 4
-1 1 5 1
-1 1 1 0
-1 1 2 6
-1 1 6 3
-1 1 4 2
-1 1 5 3
-
-vertex_to_knotspan
-1
-7 1 4 5
-
-# top-level node coordinates
-coordinates
-8
-2
-0 0
-0 1
-2 0
-2 1
-1 0
-1 1
-2 0.5
-1 0.5
-
-edges
-11
-0 0 4
-1 4 5
-0 1 5
-1 0 1
-2 6 7
-4 7 4
-2 2 4
-4 6 2
-3 6 3
-2 3 5
-3 7 5
-
-knotvectors
-5
-1 3 0 0 0.5 1 1
-1 3 0 0 0.5 1 1
-1 2 0 0 1 1
-1 2 0 0 1 1
-1 2 0 0 1 1
-
-spacing
-0
-
-weights
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-1.0
-
-FiniteElementSpace
-FiniteElementCollection: NURBS1
-VDim: 2
-Ordering: 1
-
-0 0
-0 1
-2 0
-2 1
-1 0
-1 1
-2 0.5
-1 0.5
-0.5 0
-0.5 1
-0 0.5
-0.5 0.5
-mfem_mesh_end

data/nurbs-segments2d-patches-multispan.mesh

@@ -1,86 +0,0 @@
-MFEM NURBS mesh v1.0
-
-dimension
-1
-
-# Four segments with different NURBS orders, described via patches.
-elements
-4
-1 1 0 1
-2 1 2 3
-3 1 4 5
-4 1 6 7
-
-boundary
-0
-
-edges
-4
-0 0 1
-1 2 3
-2 4 5
-3 6 7
-
-vertices
-8
-
-patches
-
-# Patch 0: linear (order 1, 3 spans)
-knotvectors
-1
-1 4  0 0  .4 .6 1 1
-
-dimension
-2
-
-controlpoints
-0.0  0.0  1.0
-0.6  0.4  1.0
-0.4  0.6  1.0
-1.0  1.0  1.0
-
-# Patch 1: quadratic (order 2, 2 spans)
-knotvectors
-1
-2 4  0 0 0  .5 1 1 1
-
-dimension
-2
-
-controlpoints
-1.0  0.0  1.0
-1.9  0.0  1.21
-2.0  0.9  1.22
-2.0  1.0  1.0
-
-# Patch 2: cubic (order 3, 3 spans)
-knotvectors
-1
-3 6  0 0 0 0 .33 .66 1 1 1 1
-
-dimension
-2
-
-controlpoints
-2.0   0.0  1.0
-2.1   0.2  1.31
-3.5   0.4  1.32
-2.5   0.6  1.33
-2.9   1.0  1.34
-3.0   1.0  1.0
-
-# Patch 3: quartic (order 4, 1 span)
-knotvectors
-1
-4 5  0 0 0 0 0 1 1 1 1 1
-
-dimension
-2
-
-controlpoints
-3.0    0.0  1.0
-3.45   0.5  1.41
-3.50   1.0  1.42
-3.75   0.8  1.43
-4.0    0.0  1.0

data/nurbs-segments2d-patches.mesh

@@ -1,79 +0,0 @@
-MFEM NURBS mesh v1.0
-
-#
-# MFEM Geometry Types (see fem/geom.hpp):
-#
-# SEGMENT     = 1
-# SQUARE      = 3
-# CUBE        = 5
-#
-
-dimension
-1
-
-# Three segments with different NURBS orders, described via patches.
-elements
-3
-1 1 0 1
-2 1 2 3
-3 1 4 5
-
-boundary
-6
-1 0 0
-1 0 1
-1 0 2
-1 0 3
-1 0 4
-1 0 5
-
-edges
-3
-0 0 1
-1 2 3
-2 4 5
-
-vertices
-6
-
-patches
-
-# Patch 0: linear (order 1, 2 control points)
-knotvectors
-1
-1 2  0 0  1 1
-
-dimension
-2
-
-controlpoints
-0.0  0.0  1.0
-1.0  1.0  1.0
-
-# Patch 1: quadratic (order 2, 3 control points)
-knotvectors
-1
-2 3  0 0 0  1 1 1
-
-dimension
-2
-
-controlpoints
-1.0  0.0   1.0
-1.02 1.02  1.2
-2.0  1.0   1.0
-
-# Patch 2: cubic (order 3, 4 control points)
-knotvectors
-1
-3 4  0 0 0 0  1 1 1 1
-
-dimension
-2
-
-controlpoints
-2.0   0.0   1.0
-2.03  0.83  1.31
-2.33  1.03  1.32
-3.0   1.0   1.0
-

data/nurbs-segments2d.mesh

@@ -1,72 +0,0 @@
-MFEM NURBS mesh v1.0
-
-#
-# MFEM Geometry Types (see fem/geom.hpp):
-#
-# SEGMENT     = 1
-# SQUARE      = 3
-# CUBE        = 5
-#
-
-dimension
-1
-
-elements
-3
-1 1 0 1
-2 1 2 3
-3 1 4 5
-
-boundary
-6
-1 0 0
-1 0 1
-1 0 2
-1 0 3
-1 0 4
-1 0 5
-
-edges
-3
-0 0 1
-1 2 3
-2 4 5
-
-vertices
-6
-
-# Edge 0: linear (order 1, 2 control points)
-# Edge 1: quadratic (order 2, 3 control points)
-# Edge 2: cubic (order 3, 4 control points)
-knotvectors
-3
-1 2  0 0  1 1
-2 3  0 0 0  1 1 1
-3 4  0 0 0 0  1 1 1 1
-
-# One weight per control point, in the same order as the control points; (2 + 3 + 4) = 9 weights total
-weights
-1
-1
-1
-1
-1
-1
-1.2
-1.31
-1.32
-
-FiniteElementSpace
-FiniteElementCollection: NURBS
-VDim: 2
-Ordering: 1
-
-0.0  0.0
-1.0  1.0
-1.0  0.0
-2.0  1.0
-2.0  0.0
-3.0  1.0
-1.02 1.02
-2.03 0.83
-2.33 1.03

data/nurbs-segments3d-patches.mesh

@@ -1,79 +0,0 @@
-MFEM NURBS mesh v1.0
-
-#
-# MFEM Geometry Types (see fem/geom.hpp):
-#
-# SEGMENT     = 1
-# SQUARE      = 3
-# CUBE        = 5
-#
-
-dimension
-1
-
-# Three segments with different NURBS orders, described via patches.
-elements
-3
-1 1 0 1
-2 1 2 3
-3 1 4 5
-
-boundary
-6
-1 0 0
-1 0 1
-1 0 2
-1 0 3
-1 0 4
-1 0 5
-
-edges
-3
-0 0 1
-1 2 3
-2 4 5
-
-vertices
-6
-
-patches
-
-# Patch 0: linear (order 1, 2 control points)
-knotvectors
-1
-1 2  0 0  1 1
-
-dimension
-3
-
-controlpoints
-0.0  0.0  0.01 1.0
-1.0  1.0  1.01 1.0
-
-# Patch 1: quadratic (order 2, 3 control points)
-knotvectors
-1
-2 3  0 0 0  1 1 1
-
-dimension
-3
-
-controlpoints
-1.0  0.0   0.02 1.0
-1.02 1.02  0.52 1.2
-2.0  1.0   1.02 1.0
-
-# Patch 2: cubic (order 3, 4 control points)
-knotvectors
-1
-3 4  0 0 0 0  1 1 1 1
-
-dimension
-3
-
-controlpoints
-2.0   0.0   0.03 1.0
-2.03  0.83  0.33 1.31
-2.33  1.03  0.63 1.32
-3.0   1.0   1.03 1.0
-

data/nurbs-segments3d.mesh

@@ -1,72 +0,0 @@
-MFEM NURBS mesh v1.0
-
-#
-# MFEM Geometry Types (see fem/geom.hpp):
-#
-# SEGMENT     = 1
-# SQUARE      = 3
-# CUBE        = 5
-#
-
-dimension
-1
-
-elements
-3
-1 1 0 1
-2 1 2 3
-3 1 4 5
-
-boundary
-6
-1 0 0
-1 0 1
-1 0 2
-1 0 3
-1 0 4
-1 0 5
-
-edges
-3
-0 0 1
-1 2 3
-2 4 5
-
-vertices
-6
-
-# Edge 0: linear (order 1, 2 control points)
-# Edge 1: quadratic (order 2, 3 control points)
-# Edge 2: cubic (order 3, 4 control points)
-knotvectors
-3
-1 2  0 0  1 1
-2 3  0 0 0  1 1 1
-3 4  0 0 0 0  1 1 1 1
-
-# One weight per control point, in the same order as the control points; (2 + 3 + 4) = 9 weights total
-weights
-1
-1
-1
-1
-1
-1
-1.2
-1.31
-1.32
-
-FiniteElementSpace
-FiniteElementCollection: NURBS
-VDim: 3
-Ordering: 1
-
-0.0  0.0   0.01
-1.0  1.0   1.01
-1.0  0.0   0.02
-2.0  1.0   1.02
-2.0  0.0   0.03
-3.0  1.0   1.03
-1.02 1.02  0.52
-2.03 0.83  0.33
-2.33 1.03  0.63

doc/CodeDocumentation.conf.in

@@ -48,7 +48,7 @@ PROJECT_NAME           = MFEM
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = v4.9.1
+PROJECT_NUMBER         = v4.8.1
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a
@@ -973,13 +973,10 @@ INPUT                  = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
                          @MFEM_SOURCE_DIR@/miniapps/adjoint \
                          @MFEM_SOURCE_DIR@/miniapps/autodiff \
                          @MFEM_SOURCE_DIR@/miniapps/common \
-                         @MFEM_SOURCE_DIR@/miniapps/contact \
                          @MFEM_SOURCE_DIR@/miniapps/dfem \
                          @MFEM_SOURCE_DIR@/miniapps/dpg \
                          @MFEM_SOURCE_DIR@/miniapps/dpg/util \
                          @MFEM_SOURCE_DIR@/miniapps/electromagnetics \
-                         @MFEM_SOURCE_DIR@/miniapps/fluids/navier \
-                         @MFEM_SOURCE_DIR@/miniapps/fluids/schrodinger-flow \
                          @MFEM_SOURCE_DIR@/miniapps/gslib \
                          @MFEM_SOURCE_DIR@/miniapps/hdiv-linear-solver \
                          @MFEM_SOURCE_DIR@/miniapps/hooke \
@@ -990,6 +987,7 @@ INPUT                  = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
                          @MFEM_SOURCE_DIR@/miniapps/meshing \
                          @MFEM_SOURCE_DIR@/miniapps/mtop \
                          @MFEM_SOURCE_DIR@/miniapps/multidomain \
+                         @MFEM_SOURCE_DIR@/miniapps/navier \
                          @MFEM_SOURCE_DIR@/miniapps/nurbs \
                          @MFEM_SOURCE_DIR@/miniapps/parelag \
                          @MFEM_SOURCE_DIR@/miniapps/performance \

doc/CodeDocumentation.dox

@@ -117,8 +117,6 @@ namespace mfem {
  * - <a class="el" href="ex39p_8cpp_source.html">Example 39p</a>: parallel named mesh attributes
  * - <a class="el" href="ex40_8cpp_source.html">Example 40</a>: eikonal equation
  * - <a class="el" href="ex40p_8cpp_source.html">Example 40p</a>: parallel eikonal equation
- * - <a class="el" href="ex41_8cpp_source.html">Example 41</a>: DG/CG IMEX time-dependent advection-diffusion
- * - <a class="el" href="ex41p_8cpp_source.html">Example 41p</a>: parallel DG/CG IMEX time-dependent advection-diffusion
  *
  * <H4>AmgX Examples</H4>
  * - Variants of Examples
@@ -190,8 +188,6 @@ namespace mfem {
  *  <a class="el" href="nurbs__ex1p_8cpp_source.html">1p</a>,
  *  <a class="el" href="nurbs__ex3_8cpp_source.html">3</a>,
  *  <a class="el" href="nurbs__ex5_8cpp_source.html">5</a>,
- *  <a class="el" href="nurbs__ex10_8cpp_source.html">10</a>,
- *  <a class="el" href="nurbs__ex10p_8cpp_source.html">10p</a>,
  *  <a class="el" href="nurbs__ex11p_8cpp_source.html">11p</a>, and
  *  <a class="el" href="nurbs__ex24_8cpp_source.html">24</a>,
  *   demonstrating howto perform NURBS-based Isogeometric Analysis.
@@ -200,14 +196,12 @@ namespace mfem {
  * - <a class="el" href="nurbs__curveint_8cpp_source.html">NURBS Interpolation</a>: NURBS interpolation of given geometry
  * - <a class="el" href="nurbs__naca__cmesh_8cpp_source.html">NURBS NACA Mesher</a>: generate NURBS based mesh around a NACA foil
  * - <a class="el" href="nurbs__printfunc_8cpp_source.html">NURBS Printer</a>: print the NURBS-basis
- * - <a class="el" href="nurbs__mesh_info_8cpp_source.html">NURBS Mesh info</a>: print the info of a NURBS mesh
  *
  * <H3>Miniapps</H3>
  * - <a class="el" href="volta_8cpp_source.html">Volta</a>: simple electrostatics simulation code
  * - <a class="el" href="tesla_8cpp_source.html">Tesla</a>: simple magnetostatics simulation code
  * - <a class="el" href="maxwell_8cpp_source.html">Maxwell</a>: simple transient full-wave electromagnetics simulation code
  * - <a class="el" href="joule_8cpp_source.html">Joule</a>: transient magnetics and Joule heating miniapp
- * - <a class="el" href="lorentz_8cpp_source.html">Lorentz</a>: simple particle tracking code based on the Lorentz force
  * - <a class="el" href="classmfem_1_1navier_1_1NavierSolver.html">Navier</a>: solve the transient incompressible Navier-Stokes equations
  * - <a class="el" href="mobius-strip_8cpp_source.html">Mobius Strip</a>: generate various Mobius strip-like meshes
  * - <a class="el" href="klein-bottle_8cpp_source.html">Klein Bottle</a>: generate three types of Klein bottle surfaces
@@ -239,8 +233,7 @@ namespace mfem {
  * - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Poisson problem
  * - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Poisson problem
  * - <a class="el" href="generate__random__field_8cpp_source.html">SPDE Solvers</a>: SPDE solver random field generation
- * - <a class="el" href="contact-patch-test_8cpp_source.html">Tribol</a>: mortar contact patch test for elasticity
- * - <a class="el" href="contact_8cpp_source.html">Contact</a>: Frictionless contact examples using <a class="el" href="classmfem_1_1IPSolver.html#details">IP optimization</a> and the <a class="el" href="classmfem_1_1AMGFSolver.html#details">AMGF solver</a>
+ * - <a class="el" href="contact-patch-test_8cpp_source.html">Contact</a>: mortar contact patch test for elasticity
  * - <a class="el" href="multidomain_8cpp_source.html">Multidomain miniapp</a>: Multidomain and Submesh demonstration miniapp
  * - <a class="el" href="pdiffusion_8cpp_source.html">DPG Diffusion example</a>: DPG formulation for the diffusion problem
  * - <a class="el" href="pmaxwell_8cpp_source.html">DPG Maxwell example</a>: DPG formulation for the indefinite Maxwell problem

examples/CMakeLists.txt

@@ -46,7 +46,6 @@ list(APPEND ALL_EXE_SRCS
   ex38.cpp
   ex39.cpp
   ex40.cpp
-  ex41.cpp
   )
 
 if (MFEM_USE_MPI)
@@ -90,7 +89,6 @@ if (MFEM_USE_MPI)
     ex37p.cpp
     ex39p.cpp
     ex40p.cpp
-    ex41p.cpp
   )
 endif()
 
@@ -133,8 +131,6 @@ if (MFEM_ENABLE_TESTING)
       list(APPEND THIS_TEST_OPTIONS "-dg")
     elseif(${TEST_NAME} MATCHES "ex37p*")
       list(APPEND THIS_TEST_OPTIONS "-mi" "3")
-    elseif(${TEST_NAME} MATCHES "ex41p*")
-      list(APPEND THIS_TEST_OPTIONS "-tf" "1.0")
     endif()
 
     if (NOT (${TEST_NAME} MATCHES ".*p$"))
@@ -209,15 +205,6 @@ if (MFEM_ENABLE_TESTING)
       $<TARGET_FILE:ex25p> "-no-vis" "--mumps-solver"
       ${MPIEXEC_POSTFLAGS})
   endif()
-
-  # Parallel libCEED example
-  if (MFEM_USE_CEED AND MFEM_USE_MPI)
-    add_test(NAME ex1p_ceed_np=${MFEM_MPI_NP}
-      COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
-      ${MPIEXEC_PREFLAGS}
-      $<TARGET_FILE:ex1p> "-no-vis" "-d ceed-cpu" "-pa" "-a"
-      ${MPIEXEC_POSTFLAGS})
-  endif()
 endif()
 
 # Include the examples/amgx directory if AmgX is enabled

examples/ex1.cpp

@@ -27,7 +27,6 @@
 //               ex1 -m ../data/fichera-amr.mesh
 //               ex1 -m ../data/mobius-strip.mesh
 //               ex1 -m ../data/mobius-strip.mesh -o -1 -sc
-//               ex1 -m ../data/nc3-nurbs.mesh -o -1
 //
 // Device sample runs:
 //               ex1 -pa -d cuda

examples/ex12p.cpp

@@ -5,9 +5,9 @@
 // Sample runs:
 //    mpirun -np 4 ex12p -m ../data/beam-tri.mesh
 //    mpirun -np 4 ex12p -m ../data/beam-quad.mesh
-//    mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 464 -n 10 -o 2 -elast
+//    mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 462 -n 10 -o 2 -elast
 //    mpirun -np 4 ex12p -m ../data/beam-hex.mesh -s 3878
-//    mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 82
+//    mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 81
 //    mpirun -np 4 ex12p -m ../data/beam-tri.mesh -s 3877 -o 2 -sys
 //    mpirun -np 4 ex12p -m ../data/beam-quad.mesh -s 4544 -n 6 -o 3 -elast
 //    mpirun -np 4 ex12p -m ../data/beam-quad-nurbs.mesh

examples/ex16.cpp

@@ -105,7 +105,6 @@ int main(int argc, char *argv[])
    bool visualization = true;
    bool visit = false;
    int vis_steps = 5;
-   bool solve_implicit_state = false;
 
    int precision = 8;
    cout.precision(precision);
@@ -127,9 +126,6 @@ int main(int argc, char *argv[])
                   "Alpha coefficient.");
    args.AddOption(&kappa, "-k", "--kappa",
                   "Kappa coefficient offset.");
-   args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
-                  "-imp-slope", "--implicit-slope",
-                  "Implicitly solve for stage state or slope.");
    args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
                   "--no-visualization",
                   "Enable or disable GLVis visualization.");
@@ -183,11 +179,6 @@ int main(int argc, char *argv[])
 
    // 7. Initialize the conduction operator and the visualization.
    ConductionOperator oper(fespace, alpha, kappa, u);
-   using ImplicitVariableType = ConductionOperator::ImplicitVariableType;
-   ImplicitVariableType imp_var = solve_implicit_state ?
-                                  ImplicitVariableType::STATE
-                                  : ImplicitVariableType::SLOPE;
-   oper.SetImplicitVariableType(imp_var);
 
    u_gf.SetFromTrueDofs(u);
    {
@@ -325,14 +316,11 @@ void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
 }
 
 void ConductionOperator::ImplicitSolve(const real_t dt,
-                                       const Vector &u, Vector &k)
+                                       const Vector &u, Vector &du_dt)
 {
    // Solve the equation:
-   //    M*k = -K(u + dt*k) for k = du/dt, if solving for stage-slope
-   // or
-   //    M*k = -dt*K(k) + M*u for k = u_s, if solving for stage-state
-   // where K is linearized by using u from the previous timestep, and
-   // the stage-state and slope relation: du/dt = (u_s - u)/dt.
+   //    du_dt = M^{-1}*[-K(u + dt*du_dt)]
+   // for du_dt, where K is linearized by using u from the previous timestep
    if (!T)
    {
       T = Add(1.0, Mmat, dt, Kmat);
@@ -340,20 +328,9 @@ void ConductionOperator::ImplicitSolve(const real_t dt,
       T_solver.SetOperator(*T);
    }
    MFEM_VERIFY(dt == current_dt, ""); // SDIRK methods use the same dt
-
-   // Construct current right-hand side for stage state vs. slope solve
-   if (ImplicitVarTypeIsState())
-   {
-      // k, on return, is the stage value u_s
-      Mmat.Mult(u, z);
-   }
-   else
-   {
-      // k, on return, is the stage slope du/dt
-      Kmat.Mult(u, z);
-      z.Neg();
-   }
-   T_solver.Mult(z, k);
+   Kmat.Mult(u, z);
+   z.Neg();
+   T_solver.Mult(z, du_dt);
 }
 
 void ConductionOperator::SetParameters(const Vector &u)

examples/ex16p.cpp

@@ -115,7 +115,6 @@ int main(int argc, char *argv[])
    bool visit = false;
    int vis_steps = 5;
    bool adios2 = false;
-   bool solve_implicit_state = false;
 
    int precision = 8;
    cout.precision(precision);
@@ -139,9 +138,6 @@ int main(int argc, char *argv[])
                   "Alpha coefficient.");
    args.AddOption(&kappa, "-k", "--kappa",
                   "Kappa coefficient offset.");
-   args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
-                  "-imp-slope", "--implicit-slope",
-                  "Implicitly solve for stage state or slope.");
    args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
                   "--no-visualization",
                   "Enable or disable GLVis visualization.");
@@ -216,11 +212,6 @@ int main(int argc, char *argv[])
 
    // 9. Initialize the conduction operator and the VisIt visualization.
    ConductionOperator oper(fespace, alpha, kappa, u);
-   using ImplicitVariableType = ConductionOperator::ImplicitVariableType;
-   ImplicitVariableType imp_var = solve_implicit_state ?
-                                  ImplicitVariableType::STATE
-                                  : ImplicitVariableType::SLOPE;
-   oper.SetImplicitVariableType(imp_var);
 
    u_gf.SetFromTrueDofs(u);
    {
@@ -416,14 +407,11 @@ void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
 }
 
 void ConductionOperator::ImplicitSolve(const real_t dt,
-                                       const Vector &u, Vector &k)
+                                       const Vector &u, Vector &du_dt)
 {
    // Solve the equation:
-   //    M*k = -K(u + dt*k) for k = du/dt, if solving for stage-slope
-   // or
-   //    M*k = -dt*K(k) + M*u for k = u_s, if solving for stage-state
-   // where K is linearized by using u from the previous timestep, and
-   // the stage-state and slope relation: du/dt = (u_s - u)/dt.
+   //    du_dt = M^{-1}*[-K(u + dt*du_dt)]
+   // for du_dt, where K is linearized by using u from the previous timestep
    if (!T)
    {
       T = Add(1.0, Mmat, dt, Kmat);
@@ -431,20 +419,9 @@ void ConductionOperator::ImplicitSolve(const real_t dt,
       T_solver.SetOperator(*T);
    }
    MFEM_VERIFY(dt == current_dt, ""); // SDIRK methods use the same dt
-
-   // Construct current right-hand side for stage state vs. slope solve
-   if (ImplicitVarTypeIsState())
-   {
-      // k, on return, is the stage value u
-      Mmat.Mult(u, z);
-   }
-   else
-   {
-      // k, on return, is the stage slope du/dt
-      Kmat.Mult(u, z);
-      z.Neg();
-   }
-   T_solver.Mult(z, k);
+   Kmat.Mult(u, z);
+   z.Neg();
+   T_solver.Mult(z, du_dt);
 }
 
 void ConductionOperator::SetParameters(const Vector &u)

examples/ex21.cpp

@@ -119,7 +119,7 @@ int main(int argc, char *argv[])
    }
 
    LinearForm b(&fespace);
-   b.AddBoundaryIntegrator(new VectorBoundaryLFIntegrator(f));
+   b.AddDomainIntegrator(new VectorBoundaryLFIntegrator(f));
 
    // 6. Set up the bilinear form a(.,.) on the finite element space
    //    corresponding to the linear elasticity integrator with piece-wise

examples/ex21p.cpp

@@ -140,7 +140,7 @@ int main(int argc, char *argv[])
    }
 
    ParLinearForm b(&fespace);
-   b.AddBoundaryIntegrator(new VectorBoundaryLFIntegrator(f));
+   b.AddDomainIntegrator(new VectorBoundaryLFIntegrator(f));
 
    // 6. Set up the bilinear form a(.,.) on the finite element space
    //    corresponding to the linear elasticity integrator with piece-wise

examples/ex22.cpp

@@ -471,13 +471,10 @@ int main(int argc, char *argv[])
 
       ofstream sol_r_ofs("sol_r.gf");
       ofstream sol_i_ofs("sol_i.gf");
-      ofstream sol_z_ofs("sol_z.gf");
       sol_r_ofs.precision(8);
       sol_i_ofs.precision(8);
-      sol_z_ofs.precision(8);
       u.real().Save(sol_r_ofs);
       u.imag().Save(sol_i_ofs);
-      u.Save(sol_z_ofs);
    }
 
    // 14. Send the solution by socket to a GLVis server.

examples/ex22p.cpp

@@ -302,21 +302,15 @@ int main(int argc, char *argv[])
       char vishost[] = "localhost";
       int  visport   = 19916;
       socketstream sol_sock_r(vishost, visport);
+      socketstream sol_sock_i(vishost, visport);
       sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
+      sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
       sol_sock_r.precision(8);
+      sol_sock_i.precision(8);
       sol_sock_r << "solution\n" << *pmesh << u_exact->real()
                  << "window_title 'Exact: Real Part'" << flush;
-      // Make sure all ranks have sent their real solution before initiating
-      // another set of GLVis connections (one from each rank):
-      MPI_Barrier(pmesh->GetComm());
-      socketstream sol_sock_i(vishost, visport);
-      sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
-      sol_sock_i.precision(8);
       sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
                  << "window_title 'Exact: Imaginary Part'" << flush;
-      // Make sure all ranks have sent their imaginary solution before initiating
-      // another set of GLVis connections (one from each rank):
-      MPI_Barrier(pmesh->GetComm());
    }
 
    // 11. Set up the parallel sesquilinear form a(.,.) on the finite element
@@ -513,11 +507,10 @@ int main(int argc, char *argv[])
    // 15. Save the refined mesh and the solution in parallel. This output can be
    //     viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
    {
-      ostringstream mesh_name, sol_r_name, sol_i_name, sol_z_name;
+      ostringstream mesh_name, sol_r_name, sol_i_name;
       mesh_name << "mesh." << setfill('0') << setw(6) << myid;
       sol_r_name << "sol_r." << setfill('0') << setw(6) << myid;
       sol_i_name << "sol_i." << setfill('0') << setw(6) << myid;
-      sol_z_name << "sol_z." << setfill('0') << setw(6) << myid;
 
       ofstream mesh_ofs(mesh_name.str().c_str());
       mesh_ofs.precision(8);
@@ -525,13 +518,10 @@ int main(int argc, char *argv[])
 
       ofstream sol_r_ofs(sol_r_name.str().c_str());
       ofstream sol_i_ofs(sol_i_name.str().c_str());
-      ofstream sol_z_ofs(sol_z_name.str().c_str());
       sol_r_ofs.precision(8);
       sol_i_ofs.precision(8);
-      sol_z_ofs.precision(8);
       u.real().Save(sol_r_ofs);
       u.imag().Save(sol_i_ofs);
-      u.Save(sol_z_ofs);
    }
 
    // 16. Send the solution by socket to a GLVis server.
@@ -540,21 +530,15 @@ int main(int argc, char *argv[])
       char vishost[] = "localhost";
       int  visport   = 19916;
       socketstream sol_sock_r(vishost, visport);
+      socketstream sol_sock_i(vishost, visport);
       sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
+      sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
       sol_sock_r.precision(8);
+      sol_sock_i.precision(8);
       sol_sock_r << "solution\n" << *pmesh << u.real()
                  << "window_title 'Solution: Real Part'" << flush;
-      // Make sure all ranks have sent their real solution before initiating
-      // another set of GLVis connections (one from each rank):
-      MPI_Barrier(pmesh->GetComm());
-      socketstream sol_sock_i(vishost, visport);
-      sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
-      sol_sock_i.precision(8);
       sol_sock_i << "solution\n" << *pmesh << u.imag()
                  << "window_title 'Solution: Imaginary Part'" << flush;
-      // Make sure all ranks have sent their imaginary solution before initiating
-      // another set of GLVis connections (one from each rank):
-      MPI_Barrier(pmesh->GetComm());
    }
    if (visualization && exact_sol)
    {
@@ -563,21 +547,15 @@ int main(int argc, char *argv[])
       char vishost[] = "localhost";
       int  visport   = 19916;
       socketstream sol_sock_r(vishost, visport);
+      socketstream sol_sock_i(vishost, visport);
       sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
+      sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
       sol_sock_r.precision(8);
+      sol_sock_i.precision(8);
       sol_sock_r << "solution\n" << *pmesh << u_exact->real()
                  << "window_title 'Error: Real Part'" << flush;
-      // Make sure all ranks have sent their real solution before initiating
-      // another set of GLVis connections (one from each rank):
-      MPI_Barrier(pmesh->GetComm());
-      socketstream sol_sock_i(vishost, visport);
-      sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
-      sol_sock_i.precision(8);
       sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
                  << "window_title 'Error: Imaginary Part'" << flush;
-      // Make sure all ranks have sent their imaginary solution before initiating
-      // another set of GLVis connections (one from each rank):
-      MPI_Barrier(pmesh->GetComm());
    }
    if (visualization)
    {

examples/ex36.cpp

@@ -97,7 +97,13 @@ int main(int argc, char *argv[])
    args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
                   "--no-visualization",
                   "Enable or disable GLVis visualization.");
-   args.ParseCheck();
+   args.Parse();
+   if (!args.Good())
+   {
+      args.PrintUsage(cout);
+      return 1;
+   }
+   args.PrintOptions(cout);
 
    // 2. Read the mesh from the mesh file.
    const char *mesh_file = "../data/disc-nurbs.mesh";
@@ -122,7 +128,7 @@ int main(int argc, char *argv[])
    *nodes /= scale;
 
    // 4. Define the necessary finite element spaces on the mesh.
-   H1Bubble_FECollection H1fec(order, order - 1, dim);
+   H1_FECollection H1fec(order+1, dim);
    FiniteElementSpace H1fes(&mesh, &H1fec);
 
    L2_FECollection L2fec(order-1, dim);

examples/ex36p.cpp

@@ -103,7 +103,19 @@ int main(int argc, char *argv[])
    args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
                   "--no-visualization",
                   "Enable or disable GLVis visualization.");
-   args.ParseCheck();
+   args.Parse();
+   if (!args.Good())
+   {
+      if (myid == 0)
+      {
+         args.PrintUsage(cout);
+      }
+      return 1;
+   }
+   if (myid == 0)
+   {
+      args.PrintOptions(cout);
+   }
 
    // 2. Read the mesh from the mesh file.
    const char *mesh_file = "../data/disc-nurbs.mesh";
@@ -131,7 +143,7 @@ int main(int argc, char *argv[])
    mesh.Clear();
 
    // 4. Define the necessary finite element spaces on the mesh.
-   H1Bubble_FECollection H1fec(order, order - 1, dim);
+   H1_FECollection H1fec(order+1, dim);
    ParFiniteElementSpace H1fes(&pmesh, &H1fec);
 
    L2_FECollection L2fec(order-1, dim);

examples/ex4.cpp

@@ -9,7 +9,6 @@
 //               ex4 -m ../data/beam-hex.mesh -o 2 -pa
 //               ex4 -m ../data/escher.mesh
 //               ex4 -m ../data/fichera.mesh -o 2 -hb
-//               ex4 -m ../data/fichera.mesh -o 2 -hb -ea
 //               ex4 -m ../data/fichera-q2.vtk
 //               ex4 -m ../data/fichera-q3.mesh -o 2 -sc
 //               ex4 -m ../data/square-disc-nurbs.mesh
@@ -19,7 +18,6 @@
 //               ex4 -m ../data/amr-quad.mesh
 //               ex4 -m ../data/amr-hex.mesh
 //               ex4 -m ../data/amr-hex.mesh -o 2 -hb
-//               ex4 -m ../data/amr-hex.mesh -o 2 -hb -ea
 //               ex4 -m ../data/fichera-amr.mesh -o 2 -sc
 //               ex4 -m ../data/ref-prism.mesh -o 1
 //               ex4 -m ../data/octahedron.mesh -o 1
@@ -27,8 +25,6 @@
 //
 // Device sample runs:
 //               ex4 -m ../data/star.mesh -pa -d cuda
-//               ex4 -m ../data/star.mesh -hb -ea -d cuda
-//               ex4 -m ../data/amr-quad.mesh -hb -ea -d cuda
 //               ex4 -m ../data/star.mesh -pa -d raja-cuda
 //               ex4 -m ../data/star.mesh -pa -d raja-omp
 //               ex4 -m ../data/beam-hex.mesh -pa -d cuda
@@ -197,7 +193,7 @@ int main(int argc, char *argv[])
    cout << "Size of linear system: " << A->Height() << endl;
 
    // 11. Solve the linear system A X = B.
-   if (!pa && (!ea || hybridization))
+   if (!pa)
    {
 #ifndef MFEM_USE_SUITESPARSE
       // Use a simple symmetric Gauss-Seidel preconditioner with PCG.

examples/ex41.cpp

@@ -1,589 +0,0 @@
-//                                MFEM Example 41
-//
-// Compile with: make ex41
-//
-// Sample runs:
-//  ex41
-//  ex41 -cg
-//  ex41 -m ../data/periodic-hexagon.mesh -p 0 -r 2 -dt 0.005 -tf 10
-//  ex41 -m ../data/periodic-square.mesh -p 1 -r 2 -dt 0.005 -tf 9
-//  ex41 -m ../data/periodic-hexagon.mesh -p 1 -r 2 -dt 0.005 -tf 9
-//  ex41 -m ../data/amr-quad.mesh -p 1 -r 2 -dt 0.002 -tf 9
-//  ex41 -m ../data/star-q3.mesh -p 1 -r 2 -dt 0.001 -tf 9
-//  ex41 -m ../data/star-mixed.mesh -p 1 -r 2 -dt 0.005 -tf 9
-//  ex41 -m ../data/disc-nurbs.mesh -p 1 -r 3 -dt 0.005 -tf 9
-//  ex41 -m ../data/disc-nurbs.mesh -p 2 -r 3 -dt 0.005 -tf 9
-//  ex41 -m ../data/periodic-square.mesh -p 3 -r 4 -dt 0.0025 -tf 9 -vs 20
-//  ex41 -m ../data/periodic-cube.mesh -p 0 -r 2 -o 2 -dt 0.01 -tf 8
-//
-// Device sample runs:
-//
-// Description:  This example code solves the time-dependent advection-diffusion
-//               equation du/dt + v.grad(u) - a div(grad(u)) = 0, where v is a
-//               given fluid velocity, a is the diffusion coefficient, and
-//               u0(x)=u(0,x) is a given initial condition.
-//
-//               The example demonstrates the use of Discontinuous Galerkin (DG)
-//               bilinear forms in MFEM (face integrators), and the use of IMEX
-//               ODE time integrators.
-//
-//               The option to use continuous finite elements is available too.
-
-#include "mfem.hpp"
-
-using namespace std;
-using namespace mfem;
-
-// Mesh bounding box
-Vector bb_min, bb_max;
-
-// Velocity coefficient
-template<int problem=0>
-void velocity_function(const Vector &x, Vector &v)
-{
-   int dim = x.Size();
-
-   // map to the reference [-1,1] domain
-   Vector X(dim);
-   for (int i = 0; i < dim; i++)
-   {
-      real_t center = (bb_min[i] + bb_max[i]) * 0.5;
-      X(i) = 2 * (x(i) - center) / (bb_max[i] - bb_min[i]);
-   }
-   switch (problem)
-   {
-      case 0:
-      {
-         // Translations in 1D, 2D, and 3D
-         switch (dim)
-         {
-            case 1: v(0) = 1.0; break;
-            case 2: v(0) = sqrt(2./3.); v(1) = sqrt(1./3.); break;
-            case 3: v(0) = sqrt(3./6.); v(1) = sqrt(2./6.); v(2) = sqrt(1./6.);
-               break;
-         }
-         break;
-      }
-      case 1:
-      case 2:
-      {
-         // Clockwise rotation in 2D around the origin
-         const real_t w = M_PI/2;
-         switch (dim)
-         {
-            case 1: v(0) = 1.0; break;
-            case 2: v(0) = w*X(1); v(1) = -w*X(0); break;
-            case 3: v(0) = w*X(1); v(1) = -w*X(0); v(2) = 0.0; break;
-         }
-         break;
-      }
-      case 3:
-      {
-         // Clockwise twisting rotation in 2D around the origin
-         const real_t w = M_PI/2;
-         real_t d = max((X(0)+1.)*(1.-X(0)),0.) * max((X(1)+1.)*(1.-X(1)),0.);
-         d = d*d;
-         switch (dim)
-         {
-            case 1: v(0) = 1.0; break;
-            case 2: v(0) = d*w*X(1); v(1) = -d*w*X(0); break;
-            case 3: v(0) = d*w*X(1); v(1) = -d*w*X(0); v(2) = 0.0; break;
-         }
-         break;
-      }
-   }
-}
-
-// Initial condition
-template<int problem=0>
-real_t u0_function(const Vector &x)
-{
-   int dim = x.Size();
-
-   // map to the reference [-1,1] domain
-   Vector X(dim);
-   for (int i = 0; i < dim; i++)
-   {
-      real_t center = (bb_min[i] + bb_max[i]) * 0.5;
-      X(i) = 2 * (x(i) - center) / (bb_max[i] - bb_min[i]);
-   }
-
-   switch (problem)
-   {
-      case 0:
-      case 1:
-      {
-         switch (dim)
-         {
-            case 1:
-               return exp(-40.*pow(X(0)-0.5,2));
-            case 2:
-            case 3:
-            {
-               real_t rx = 0.45, ry = 0.25, cx = 0., cy = -0.2, w = 10.;
-               if (dim == 3)
-               {
-                  const real_t s = (1. + 0.25*cos(2*M_PI*X(2)));
-                  rx *= s;
-                  ry *= s;
-               }
-               return ( std::erfc(w*(X(0)-cx-rx))*std::erfc(-w*(X(0)-cx+rx)) *
-                        std::erfc(w*(X(1)-cy-ry))*std::erfc(-w*(X(1)-cy+ry)) )/16;
-            }
-         }
-      }
-      case 2:
-      {
-         real_t x_ = X(0), y_ = X(1), rho, phi;
-         rho = std::hypot(x_, y_);
-         phi = atan2(y_, x_);
-         return pow(sin(M_PI*rho),2)*sin(3*phi);
-      }
-      case 3:
-      {
-         const real_t f = M_PI;
-         return sin(f*X(0))*sin(f*X(1));
-      }
-   }
-   return 0.0;
-}
-
-/// Solver for the implicit part of the ODE (the diffusion term).
-/// Solves systems of the form: (M + dt*S) k = rhs.
-class Implicit_Solver : public Solver
-{
-private:
-   SparseMatrix &M, &S, A;
-   CGSolver linear_solver;
-   BlockILU prec;
-   real_t dt;
-public:
-   Implicit_Solver(SparseMatrix &M_, SparseMatrix &S_,
-                   const FiniteElementSpace &fes)
-      : M(M_),
-        S(S_),
-        prec(fes.GetTypicalFE()->GetDof(),
-             BlockILU::Reordering::MINIMUM_DISCARDED_FILL),
-        dt(1.0)
-   {
-      linear_solver.iterative_mode = false;
-      linear_solver.SetRelTol(1e-9);
-      linear_solver.SetAbsTol(0.0);
-      linear_solver.SetMaxIter(100);
-      linear_solver.SetPrintLevel(0);
-      linear_solver.SetPreconditioner(prec);
-   }
-
-   void SetTimeStep(real_t dt_)
-   {
-      real_t ddt = dt-dt_;
-
-      real_t epsilon;
-      epsilon = std::numeric_limits<real_t>::epsilon();
-      epsilon*=10;
-
-      if (std::abs(ddt) > epsilon)
-      {
-         dt = dt_;
-         // Form operator A = M + dt*S
-         A = S;
-         A *= dt;
-         A += M;
-
-         // this will also call SetOperator on the preconditioner
-         linear_solver.SetOperator(A);
-      }
-   }
-
-   void SetOperator(const Operator &op) override
-   {
-      linear_solver.SetOperator(op);
-   }
-
-   void Mult(const Vector &x, Vector &y) const override
-   {
-      linear_solver.Mult(x, y);
-   }
-};
-
-/** A time-dependent operator for the right-hand side of the ODE. The weak
-    form of the advection-diffusion equation is M du/dt = K u - S u + b,
-    where M is the mass matrix, K and S are the advection and diffusion
-    matrices, and b describes the flow on the boundary. In the case of IMEX
-    evolution, the diffusion term is treated implicitly, and the advection
-    term is treated explicitly.  */
-class IMEX_Evolution : public TimeDependentOperator
-{
-private:
-   BilinearForm &M, &K, &S;
-   const Vector &b;
-   unique_ptr<Solver> M_prec;
-   CGSolver M_solver;
-   unique_ptr<Implicit_Solver> implicit_solver;
-
-   mutable Vector z;
-
-public:
-   IMEX_Evolution(BilinearForm &M_, BilinearForm &K_, BilinearForm &S_,
-                  const Vector &b_);
-
-   /// Evaluate k1=M^{-1}*G1(u,t); -> k1 = M^{-1}*(K*u + b)
-   void Mult1(const Vector &x, Vector &y) const;
-
-   /// Evaluate k2: M*k2 = G2(u+k2*dt,t); -> (M+S*dt)*k2=-S*u
-   void ImplicitSolve2(const real_t dt, const Vector &x, Vector &k);
-
-   void Mult(const Vector &x, Vector &y) const override
-   {
-      if (TimeDependentOperator::EvalMode::ADDITIVE_TERM_1 == GetEvalMode())
-      {
-         Mult1(x,y);
-      }
-      else
-      {
-         mfem_error("TimeDependentOperator::Mult() is not overridden!");
-      }
-   }
-
-   void ImplicitSolve(const real_t dt, const Vector &x, Vector &k) override
-   {
-      if (TimeDependentOperator::EvalMode::ADDITIVE_TERM_2 == GetEvalMode())
-      {
-         ImplicitSolve2(dt,x,k);
-      }
-      else
-      {
-         mfem_error("TimeDependentOperator::ImplicitSolve() is not overridden!");
-      }
-   }
-
-};
-
-
-int main(int argc, char *argv[])
-{
-   // 1. Parse command-line options.
-   int problem = 0;
-   const char *mesh_file = "../data/periodic-square.mesh";
-   int ref_levels = 2;
-   int order = 3;
-   int ode_solver_type = 64; //IMEXRK3(3,4,3)
-   real_t t_final = 10.0;
-   real_t dt = 0.01;
-   bool paraview = false;
-   bool cg = false;
-   int vis_steps = 50;
-   real_t diffusion_term = 0.01;
-   real_t kappa = -1.0;
-   real_t sigma = -1.0;
-   bool visualization = true;
-   bool visit = false;
-   bool binary = false;
-   int precision = 8;
-   OptionsParser args(argc, argv);
-   args.AddOption(&mesh_file, "-m", "--mesh", "Mesh file to use.");
-   args.AddOption(&problem, "-p", "--problem",
-                  "Problem setup to use. See options in velocity_function().");
-   args.AddOption(&ref_levels, "-r", "--refine",
-                  "Number of times to refine the mesh uniformly.");
-   args.AddOption(&order, "-o", "--order", "Order of the finite elements.");
-   args.AddOption(&ode_solver_type, "-s", "--ode-solver",
-                  ODESolver::IMEXTypes.c_str());
-   args.AddOption(&t_final, "-tf", "--t-final", "Final time; start time is 0.");
-   args.AddOption(&dt, "-dt", "--time-step", "Time step.");
-   args.AddOption(&diffusion_term, "-dc", "--diffusion-coeff",
-                  "Diffusion coefficient in the PDE.");
-   args.AddOption(&paraview, "-paraview", "--paraview-datafiles", "-no-paraview",
-                  "--no-paraview-datafiles",
-                  "Save data files for ParaView (paraview.org) visualization.");
-   args.AddOption(&vis_steps, "-vs", "--visualization-steps",
-                  "Visualize every n-th timestep.");
-   args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
-                  "--no-visualization",
-                  "Enable or disable GLVis visualization.");
-   args.AddOption(&binary, "-binary", "--binary-datafiles", "-ascii",
-                  "--ascii-datafiles",
-                  "Use binary (Sidre) or ascii format for VisIt data files.");
-   args.AddOption(&visit, "-visit", "--visit-datafiles", "-no-visit",
-                  "--no-visit-datafiles",
-                  "Save data files for VisIt (visit.llnl.gov) visualization.");
-   args.AddOption(&cg, "-cg", "--continuous-galerkin", "-dg",
-                  "--discontinuous-galerkin",
-                  "Use Continuous-Galerkin Finite elements (Default is DG)");
-   args.Parse();
-   if (!args.Good())
-   {
-      args.PrintUsage(cout);
-      return 1;
-   }
-   if (kappa < 0)
-   {
-      kappa = (order+1)*(order+1);
-   }
-   args.PrintOptions(cout);
-
-   // 2. Read the mesh from the given mesh file. We can handle geometrically
-   //    periodic meshes in this code.
-   Mesh mesh(mesh_file);
-   const int dim = mesh.Dimension();
-
-   // 3. Define the IMEX (Split) ODE solver used for time integration. The IMEX
-   // solvers currently available are: 61 - Forward Backward Euler,
-   // 62 - IMEXRK2(2,2,2), 63 - IMEXRK2(2,3,2), and  64 - IMEX_DIRK_RK3.
-   unique_ptr<ODESolver> ode_solver = ODESolver::SelectIMEX(ode_solver_type);
-
-   // 4. Refine the mesh to increase the resolution. In this example we do
-   //    'ref_levels' of uniform refinement, where 'ref_levels' is a
-   //    command-line parameter.
-   for (int lev = 0; lev < ref_levels; lev++) {mesh.UniformRefinement();}
-   if (mesh.NURBSext) {mesh.SetCurvature(max(order, 1));}
-   mesh.GetBoundingBox(bb_min, bb_max, max(order, 1));
-
-   // 5. Define the discontinuous DG finite element space of the given
-   //    polynomial order on the refined mesh.
-   FiniteElementCollection *fec = NULL;
-   if (cg)
-   {
-      fec = new H1_FECollection(order, dim);
-   }
-   else
-   {
-      fec = new DG_FECollection(order, dim, BasisType::GaussLobatto);
-   }
-   FiniteElementSpace fes(&mesh, fec);
-
-   cout << "Number of unknowns: " << fes.GetVSize() << endl;
-
-   // 6. Set up and assemble the bilinear and linear forms corresponding to the
-   //    DG discretization. The DGTraceIntegrator involves integrals over mesh
-   //    interior faces.
-   std::unique_ptr<VectorFunctionCoefficient> velocity;
-   if (0==problem)
-   {
-      velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<0>));
-   }
-   else if (1==problem)
-   {
-      velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<1>));
-   }
-   else if (2==problem)
-   {
-      velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<2>));
-   }
-   else if (3==problem)
-   {
-      velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<3>));
-   }
-
-   ConstantCoefficient diff_coeff(diffusion_term);
-
-   BilinearForm m(&fes);
-   BilinearForm k(&fes);
-   BilinearForm s(&fes);
-
-   Vector b(fes.GetTrueVSize());
-   b = 0.0; //The inflow on the boundaries is set to zero.
-
-   m.AddDomainIntegrator(new MassIntegrator);
-
-   constexpr real_t alpha = -1.0;
-   k.AddDomainIntegrator(new ConvectionIntegrator(*velocity, alpha));
-
-   s.AddDomainIntegrator(new DiffusionIntegrator(diff_coeff));
-   if (!cg)
-   {
-      k.AddInteriorFaceIntegrator(new NonconservativeDGTraceIntegrator(*velocity,
-                                                                       alpha));
-      k.AddBdrFaceIntegrator(new NonconservativeDGTraceIntegrator(*velocity, alpha));
-      s.AddInteriorFaceIntegrator(new DGDiffusionIntegrator(diff_coeff, sigma,
-                                                            kappa));
-      s.AddBdrFaceIntegrator(new DGDiffusionIntegrator(diff_coeff, sigma, kappa));
-   }
-
-
-   int skip_zeros = 0;
-   m.Assemble(skip_zeros);
-   k.Assemble(skip_zeros);
-   s.Assemble(skip_zeros);
-
-   m.Finalize(skip_zeros);
-   k.Finalize(skip_zeros);
-   s.Finalize(skip_zeros);
-
-   // 7. Define the initial conditions.
-   std::unique_ptr<FunctionCoefficient> u0;
-   if (0==problem)
-   {
-      u0.reset(new FunctionCoefficient(u0_function<0>));
-   }
-   else if (1==problem)
-   {
-      u0.reset(new FunctionCoefficient(u0_function<1>));
-   }
-   else if (2==problem)
-   {
-      u0.reset(new FunctionCoefficient(u0_function<2>));
-   }
-   else if (3==problem)
-   {
-      u0.reset(new FunctionCoefficient(u0_function<3>));
-   }
-
-   GridFunction u(&fes);
-   u.ProjectCoefficient(*u0);
-
-   // Create data collection for solution output: either VisItDataCollection for
-   // ascii data files, or SidreDataCollection for binary data files.
-   DataCollection *dc = NULL;
-   if (visit)
-   {
-      if (binary)
-      {
-#ifdef MFEM_USE_SIDRE
-         dc = new SidreDataCollection("Example41", &mesh);
-#else
-         MFEM_ABORT("Must build with MFEM_USE_SIDRE=YES for binary output.");
-#endif
-      }
-      else
-      {
-         dc = new VisItDataCollection("Example41", &mesh);
-         dc->SetPrecision(precision);
-      }
-      dc->RegisterField("solution", &u);
-      dc->SetCycle(0);
-      dc->SetTime(0.0);
-      dc->Save();
-   }
-
-   // 8. Set up paraview visualization, if desired.
-   unique_ptr<ParaViewDataCollection> pv;
-   if (paraview)
-   {
-      pv = make_unique<ParaViewDataCollection>("Example41", &mesh);
-      pv->SetPrefixPath("ParaView");
-      pv->RegisterField("solution", &u);
-      pv->SetLevelsOfDetail(order);
-      pv->SetDataFormat(VTKFormat::BINARY);
-      pv->SetHighOrderOutput(true);
-      pv->SetCycle(0);
-      pv->SetTime(0.0);
-      pv->Save();
-   }
-
-   socketstream sout;
-   if (visualization)
-   {
-      char vishost[] = "localhost";
-      int  visport   = 19916;
-      sout.open(vishost, visport);
-      if (!sout)
-      {
-         cout << "Unable to connect to GLVis server at "
-              << vishost << ':' << visport << endl;
-         visualization = false;
-         cout << "GLVis visualization disabled.\n";
-      }
-      else
-      {
-         sout.precision(precision);
-         sout << "solution\n" << mesh << u;
-         sout << "pause\n";
-         sout << flush;
-         cout << "GLVis visualization paused."
-              << " Press space (in the GLVis window) to resume it.\n";
-      }
-   }
-
-   // 9. Define the time-dependent evolution operator describing the ODE
-   //    right-hand side, and perform time-integration (looping over the time
-   //    iterations, ti, with a time-step dt).
-   IMEX_Evolution adv(m, k, s, b);
-
-   real_t t = 0.0;
-   adv.SetTime(t);
-   ode_solver->Init(adv);
-
-   bool done = false;
-   for (int ti = 0; !done; )
-   {
-      real_t dt_real = min(dt, t_final - t);
-      ode_solver->Step(u, t, dt_real);
-      ti++;
-
-      done = (t >= t_final - 1e-8*dt);
-
-      if (done || ti % vis_steps == 0)
-      {
-         cout << "time step: " << ti << ", time: " << t << endl;
-         if (paraview)
-         {
-            pv->SetCycle(ti);
-            pv->SetTime(t);
-            pv->Save();
-         }
-         if (visualization)
-         {
-            sout << "solution\n" << mesh << u << flush;
-         }
-         if (visit)
-         {
-            dc->SetCycle(ti);
-            dc->SetTime(t);
-            dc->Save();
-         }
-
-      }
-   }
-
-   delete fec;
-   return 0;
-}
-
-
-// Implementation of class IMEX_Evolution
-IMEX_Evolution::IMEX_Evolution(BilinearForm &M_, BilinearForm &K_,
-                               BilinearForm &S_, const Vector &b_)
-   : TimeDependentOperator(M_.FESpace()->GetTrueVSize()),
-     M(M_), K(K_), S(S_), b(b_), z(height)
-{
-   Array<int> ess_tdof_list;
-   if (M.GetAssemblyLevel() == AssemblyLevel::LEGACY)
-   {
-      M_prec = make_unique<DSmoother>(M.SpMat());
-      M_solver.SetOperator(M.SpMat());
-      implicit_solver = make_unique<Implicit_Solver>(M.SpMat(), S.SpMat(),
-                                                     *M.FESpace());
-   }
-   else
-   {
-      MFEM_ABORT("Implicit time integration is not supported with partial assembly");
-   }
-   M_solver.SetPreconditioner(*M_prec);
-   M_solver.iterative_mode = false;
-   M_solver.SetRelTol(1e-9);
-   M_solver.SetAbsTol(0.0);
-   M_solver.SetMaxIter(100);
-   M_solver.SetPrintLevel(0);
-}
-
-void IMEX_Evolution::Mult1(const Vector &x, Vector &y) const
-{
-   // Perform the explicit step
-   // y = M^{-1} (K x + b)
-   K.Mult(x, z);
-   z += b;
-   M_solver.Mult(z, y);
-}
-
-void IMEX_Evolution::ImplicitSolve2(const real_t dt, const Vector &x, Vector &k)
-{
-   // Perform the implicit step
-   // solve for k, k = -(M+dt S)^{-1} S x
-   MFEM_VERIFY(implicit_solver != NULL,
-               "Implicit time integration is not supported with partial assembly");
-   S.Mult(x, z);
-   z.Neg();
-   implicit_solver->SetTimeStep(dt);
-   implicit_solver->Mult(z, k);
-}

examples/ex41p.cpp

@@ -1,737 +0,0 @@
-//                                MFEM Example 41 - Parallel Version
-//
-// Compile with: make ex41p
-//
-// Sample runs:
-//  mpirun -np 4 ex41p
-//  mpirun -np 4 ex41p -cg
-//  mpirun -np 4 ex41p -m ../data/periodic-hexagon.mesh -p 0 -dt 0.005 -tf 10
-//  mpirun -np 4 ex41p -m ../data/periodic-square.mesh -p 1 -dt 0.005 -tf 9
-//  mpirun -np 4 ex41p -m ../data/periodic-hexagon.mesh -p 1  -dt 0.005 -tf 9
-//  mpirun -np 4 ex41p -m ../data/star-q3.mesh -p 1 -rp 1 -dt 0.001 -tf 9
-//  mpirun -np 4 ex41p -m ../data/disc-nurbs.mesh -p 1 -rp 1 -dt 0.005 -tf 9
-//  mpirun -np 4 ex41p -m ../data/disc-nurbs.mesh -p 2 -rp 1 -dt 0.005 -tf 9
-//  mpirun -np 4 ex41p -m ../data/periodic-square.mesh -rp 2 -dt 0.0025 -tf 9 -vs 20
-//  mpirun -np 4 ex41p -m ../data/periodic-cube.mesh -p 0 -rs 2 -o 2 -dt 0.01 -tf 8
-//
-// Device sample runs:
-//
-// Description:  This example code solves the time-dependent advection-diffusion
-//               equation du/dt + v.grad(u) - a div(grad(u)) = 0, where v is a
-//               given fluid velocity, a is the diffusion coefficient, and
-//               u0(x)=u(0,x) is a given initial condition.
-//
-//               The example demonstrates the use of Discontinuous Galerkin (DG)
-//               bilinear forms in MFEM (face integrators), DG-LOR Preconditioning
-//               and the use of IMEX ODE time integrators.
-//
-//               The Option to use Continuous Finite Elements is available too.
-
-#include "mfem.hpp"
-
-using namespace std;
-using namespace mfem;
-
-// Mesh bounding box
-Vector bb_min, bb_max;
-
-// Velocity coefficient
-template<int problem=0>
-void velocity_function(const Vector &x, Vector &v)
-{
-   int dim = x.Size();
-
-   // map to the reference [-1,1] domain
-   Vector X(dim);
-   for (int i = 0; i < dim; i++)
-   {
-      real_t center = (bb_min[i] + bb_max[i]) * 0.5;
-      X(i) = 2 * (x(i) - center) / (bb_max[i] - bb_min[i]);
-   }
-   switch (problem)
-   {
-      case 0:
-      {
-         // Translations in 1D, 2D, and 3D
-         switch (dim)
-         {
-            case 1: v(0) = 1.0; break;
-            case 2: v(0) = sqrt(2./3.); v(1) = sqrt(1./3.); break;
-            case 3: v(0) = sqrt(3./6.); v(1) = sqrt(2./6.); v(2) = sqrt(1./6.);
-               break;
-         }
-         break;
-      }
-      case 1:
-      case 2:
-      {
-         // Clockwise rotation in 2D around the origin
-         const real_t w = M_PI/2;
-         switch (dim)
-         {
-            case 1: v(0) = 1.0; break;
-            case 2: v(0) = w*X(1); v(1) = -w*X(0); break;
-            case 3: v(0) = w*X(1); v(1) = -w*X(0); v(2) = 0.0; break;
-         }
-         break;
-      }
-      case 3:
-      {
-         // Clockwise twisting rotation in 2D around the origin
-         const real_t w = M_PI/2;
-         real_t d = max((X(0)+1.)*(1.-X(0)),0.) * max((X(1)+1.)*(1.-X(1)),0.);
-         d = d*d;
-         switch (dim)
-         {
-            case 1: v(0) = 1.0; break;
-            case 2: v(0) = d*w*X(1); v(1) = -d*w*X(0); break;
-            case 3: v(0) = d*w*X(1); v(1) = -d*w*X(0); v(2) = 0.0; break;
-         }
-         break;
-      }
-   }
-}
-
-
-// Initial condition
-template<int problem=0>
-real_t u0_function(const Vector &x)
-{
-   int dim = x.Size();
-
-   // map to the reference [-1,1] domain
-   Vector X(dim);
-   for (int i = 0; i < dim; i++)
-   {
-      real_t center = (bb_min[i] + bb_max[i]) * 0.5;
-      X(i) = 2 * (x(i) - center) / (bb_max[i] - bb_min[i]);
-   }
-
-   switch (problem)
-   {
-      case 0:
-      case 1:
-      {
-         switch (dim)
-         {
-            case 1:
-               return exp(-40.*pow(X(0)-0.5,2));
-            case 2:
-            case 3:
-            {
-               real_t rx = 0.45, ry = 0.25, cx = 0., cy = -0.2, w = 10.;
-               if (dim == 3)
-               {
-                  const real_t s = (1. + 0.25*cos(2*M_PI*X(2)));
-                  rx *= s;
-                  ry *= s;
-               }
-               return ( std::erfc(w*(X(0)-cx-rx))*std::erfc(-w*(X(0)-cx+rx)) *
-                        std::erfc(w*(X(1)-cy-ry))*std::erfc(-w*(X(1)-cy+ry)) )/16;
-            }
-         }
-      }
-      case 2:
-      {
-         real_t x_ = X(0), y_ = X(1), rho, phi;
-         rho = std::hypot(x_, y_);
-         phi = atan2(y_, x_);
-         return pow(sin(M_PI*rho),2)*sin(3*phi);
-      }
-      case 3:
-      {
-         const real_t f = M_PI;
-         return sin(f*X(0))*sin(f*X(1));
-      }
-   }
-   return 0.0;
-}
-
-
-class Implicit_Solver : public Solver
-{
-private:
-   HypreParMatrix &M, &S;
-   HypreParMatrix *A;
-   CGSolver linear_solver;
-   real_t dt;
-   SparseMatrix M_diag;
-public:
-   Implicit_Solver(HypreParMatrix &M_, HypreParMatrix &S_,
-                   const FiniteElementSpace &fes)
-      : M(M_),
-        S(S_),
-        A(nullptr),
-        linear_solver(M.GetComm()),
-        dt(1.0)
-   {
-      linear_solver.iterative_mode = false;
-      linear_solver.SetRelTol(1e-9);
-      linear_solver.SetAbsTol(0.0);
-      linear_solver.SetMaxIter(100);
-      linear_solver.SetPrintLevel(0);
-
-      M.GetDiag(M_diag);
-   }
-
-   void SetTimeStep(real_t dt_)
-   {
-      real_t ddt = dt-dt_;
-
-      // syncronize ddt across all processes
-      MPI_Comm comm = M.GetComm();
-      int myrank;
-      MPI_Comm_rank(comm, &myrank);
-      MPI_Bcast(&ddt, 1, MPI_DOUBLE, 0, comm);
-
-      real_t epsilon;
-      epsilon = std::numeric_limits<real_t>::epsilon();
-      // allow for some tolerance in the time stepping process
-      epsilon*=10;
-
-      if (fabs(ddt) > epsilon)
-      {
-         if (0==myrank)
-         {
-            cout << "Updating Implicit_Solver time step from " << dt
-                 << " to " << dt_ << endl;
-         }
-
-         delete A;
-         dt = dt_;
-         // Form operator A = M + dt*S
-         A = Add(dt, S, 1.0, M);
-         linear_solver.SetOperator(*A);
-      }
-   }
-
-   void SetOperator(const Operator &op) override
-   {
-      linear_solver.SetOperator(op);
-   }
-
-   void Mult(const Vector &x, Vector &y) const override
-   {
-      linear_solver.Mult(x, y);
-   }
-
-   void SetPreconditioner(Solver &precond)
-   {
-      linear_solver.SetPreconditioner(precond);
-   }
-
-   ~Implicit_Solver() override
-   {
-      delete A;
-   }
-};
-
-/** A time-dependent operator for the right-hand side of the ODE. The DG weak
-    form of the advection-diffusion equation is (M + dt S) du/dt = Su - K u + b
-    , where M and K are the mass and advection matrices, and b describes the
-    flow on the boundary. In the case of IMEX evolution, the diffusion term is
-    treated implicitly, and the advection term is treated explicitly.  */
-class IMEX_Evolution : public TimeDependentOperator
-{
-private:
-   OperatorHandle M, K, S, A;
-   const Vector &b;
-   Solver *M_prec;
-   CGSolver M_solver;
-   Implicit_Solver *implicit_solver;
-   LORSolver<HypreBoomerAMG>* lor_solver;
-
-   mutable Vector z;
-   mutable Vector w;
-
-public:
-   IMEX_Evolution(ParBilinearForm &M_, ParBilinearForm &K_, ParBilinearForm &S_,
-                  const Vector &b_, ParBilinearForm &A_);
-
-   virtual
-   ~IMEX_Evolution()
-   {
-      delete implicit_solver;
-      delete lor_solver;
-      delete M_prec;
-   }
-
-   void Mult1(const Vector &x, Vector &y) const;
-
-   void ImplicitSolve2(const real_t dt, const Vector &x, Vector &k);
-
-   void Mult(const Vector &x, Vector &y) const override
-   {
-      if (TimeDependentOperator::EvalMode::ADDITIVE_TERM_1 == GetEvalMode())
-      {
-         Mult1(x,y);
-      }
-      else
-      {
-         mfem_error("TimeDependentOperator::Mult() is not overridden!");
-      }
-   }
-
-   void ImplicitSolve(const real_t dt, const Vector &x, Vector &k) override
-   {
-      if (TimeDependentOperator::EvalMode::ADDITIVE_TERM_2 == GetEvalMode())
-      {
-         ImplicitSolve2(dt,x,k);
-      }
-      else
-      {
-         mfem_error("TimeDependentOperator::ImplicitSolve() is not overridden!");
-      }
-   }
-};
-
-
-int main(int argc, char *argv[])
-{
-   // 1. Initialize MPI and HYPRE.
-   Mpi::Init();
-   int num_procs = Mpi::WorldSize();
-   int myid = Mpi::WorldRank();
-   Hypre::Init();
-
-   // 2. Parse command-line options.
-   int problem = 0;
-   const char *mesh_file = "../data/periodic-square.mesh";
-   int ser_ref_levels = 2;
-   int par_ref_levels = 0;
-   int order = 3;
-   int ode_solver_type = 64; // 61 - Forward Backward Euler
-   // 62 - IMEXRK2(2,2,2)
-   // 63 - IMEXRK2(2,3,2)
-   // 64 - IMEXRK3(3,4,3)
-   real_t t_final = 10.0;
-   real_t dt = 0.01;
-   bool paraview = false;
-   bool cg = false;
-   int vis_steps = 50;
-   bool adios2 = false;
-   bool binary = false;
-   real_t diffusion_term = 0.01;
-   real_t kappa = -1.0;
-   real_t sigma = -1.0;
-   bool visualization = true;
-   bool visit = false;
-   int precision = 16;
-   cout.precision(precision);
-
-   OptionsParser args(argc, argv);
-   args.AddOption(&mesh_file, "-m", "--mesh",
-                  "Mesh file to use.");
-   args.AddOption(&problem, "-p", "--problem",
-                  "Problem setup to use. See options in velocity_function().");
-   args.AddOption(&ser_ref_levels, "-rs", "--refine-serial",
-                  "Number of times to refine the mesh uniformly in serial.");
-   args.AddOption(&par_ref_levels, "-rp", "--refine-parallel",
-                  "Number of times to refine the mesh uniformly in parallel.");
-   args.AddOption(&order, "-o", "--order",
-                  "Order (degree) of the finite elements.");
-   args.AddOption(&ode_solver_type, "-s", "--ode-solver",
-                  ODESolver::IMEXTypes.c_str());
-   args.AddOption(&t_final, "-tf", "--t-final",
-                  "Final time; start time is 0.");
-   args.AddOption(&dt, "-dt", "--time-step",
-                  "Time step.");
-   args.AddOption(&diffusion_term, "-dc", "--diffusion-coeff",
-                  "Diffusion coefficient in the PDE.");
-   args.AddOption(&paraview, "-paraview", "--paraview-datafiles", "-no-paraview",
-                  "--no-paraview-datafiles",
-                  "Save data files for ParaView (paraview.org) visualization.");
-   args.AddOption(&visit, "-visit", "--visit-datafiles", "-no-visit",
-                  "--no-visit-datafiles",
-                  "Save data files for VisIt (visit.llnl.gov) visualization.");
-   args.AddOption(&adios2, "-adios2", "--adios2-streams", "-no-adios2",
-                  "--no-adios2-streams",
-                  "Save data using adios2 streams.");
-   args.AddOption(&binary, "-binary", "--binary-datafiles", "-ascii",
-                  "--ascii-datafiles",
-                  "Use binary (Sidre) or ascii format for VisIt data files.");
-   args.AddOption(&vis_steps, "-vs", "--visualization-steps",
-                  "Visualize every n-th timestep.");
-   args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
-                  "--no-visualization",
-                  "Enable or disable GLVis visualization.");
-   args.AddOption(&cg, "-cg", "--continuous-galerkin", "-dg",
-                  "--discontinuous-galerkin",
-                  "Use Continuous-Galerkin Finite elements (Default is DG)");
-   args.Parse();
-   if (!args.Good())
-   {
-      if (Mpi::Root())
-      {
-         args.PrintUsage(cout);
-      }
-      return 1;
-   }
-   if (Mpi::Root())
-   {
-      args.PrintOptions(cout);
-   }
-   if (kappa < 0)
-   {
-      kappa = (order+1)*(order+1);
-   }
-
-   // 3. Read the mesh from the given mesh file. We can handle geometrically
-   //    periodic meshes in this code.
-   Mesh *mesh = new Mesh(mesh_file);
-   const int dim = mesh->Dimension();
-
-   // 4. Define the IMEX (Split) ODE solver used for time integration. The IMEX
-   // solvers currently available are: 55 - Forward Backward Euler,
-   // 56 - IMEXRK2(2,2,2), 57 - IMEXRK2(2,3,2), and
-   unique_ptr<ODESolver> ode_solver = ODESolver::SelectIMEX(ode_solver_type);
-
-   // 5. Refine the mesh to increase the resolution. In this example we do
-   //    'ref_levels' of uniform refinement, where 'ref_levels' is a
-   //    command-line parameter.
-   for (int lev = 0; lev < ser_ref_levels; lev++) { mesh->UniformRefinement(); }
-   if (mesh->NURBSext)
-   {
-      mesh->SetCurvature(max(order, 1));
-   }
-   mesh->GetBoundingBox(bb_min, bb_max, max(order, 1));
-
-
-   // 6. Define the parallel mesh by a partitioning of the serial mesh. Refine
-   //    this mesh further in parallel to increase the resolution. Once the
-   //    parallel mesh is defined, the serial mesh can be deleted.
-   ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
-   delete mesh;
-   for (int lev = 0; lev < par_ref_levels; lev++)
-   {
-      pmesh->UniformRefinement();
-   }
-
-   // 7. Define the discontinuous DG finite element space of the given
-   //    polynomial order on the refined mesh.
-   FiniteElementCollection *fec = NULL;
-   if (cg)
-   {
-      fec = new H1_FECollection(order, dim);
-   }
-   else
-   {
-      fec = new DG_FECollection(order, dim, BasisType::GaussLobatto);
-   }
-   ParFiniteElementSpace *fes = new ParFiniteElementSpace(pmesh, fec);
-
-   HYPRE_BigInt global_vSize = fes->GlobalTrueVSize();
-   if (Mpi::Root())
-   {
-      cout << "Number of unknowns: " << global_vSize << endl;
-   }
-
-   // 8. Set up and assemble the bilinear and linear forms corresponding to the
-   //    DG discretization. The DGTraceIntegrator involves integrals over mesh
-   //    interior faces.
-   std::unique_ptr<VectorFunctionCoefficient> velocity;
-   if (0==problem)
-   {
-      velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<0>));
-   }
-   else if (1==problem)
-   {
-      velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<1>));
-   }
-   else if (2==problem)
-   {
-      velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<2>));
-   }
-   else if (3==problem)
-   {
-      velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<3>));
-   }
-   ConstantCoefficient diff_coeff(diffusion_term);
-   ConstantCoefficient dt_diff_coeff(dt*diffusion_term);
-
-   ParBilinearForm *m = new ParBilinearForm(fes);
-   ParBilinearForm *k = new ParBilinearForm(fes);
-   ParBilinearForm *s = new ParBilinearForm(fes);
-
-   m->AddDomainIntegrator(new MassIntegrator());
-
-   constexpr real_t alpha = -1.0;
-   k->AddDomainIntegrator(new ConvectionIntegrator(*velocity, alpha));
-
-   s->AddDomainIntegrator(new DiffusionIntegrator(diff_coeff));
-
-   // For the preconditioner - create billinear form corresponding to
-   // operator (M + dt S)
-   ParBilinearForm *a = new ParBilinearForm(fes);
-   a->AddDomainIntegrator(new MassIntegrator);
-   a->AddDomainIntegrator(new DiffusionIntegrator(dt_diff_coeff));
-   if (!cg)
-   {
-      k->AddInteriorFaceIntegrator(new NonconservativeDGTraceIntegrator(*velocity,
-                                                                        alpha));
-      k->AddBdrFaceIntegrator(new NonconservativeDGTraceIntegrator(*velocity, alpha));
-      s->AddInteriorFaceIntegrator(new DGDiffusionIntegrator(diff_coeff, sigma,
-                                                             kappa));
-      s->AddBdrFaceIntegrator(new DGDiffusionIntegrator(diff_coeff, sigma, kappa));
-      a->AddInteriorFaceIntegrator(new DGDiffusionIntegrator(dt_diff_coeff, sigma,
-                                                             kappa));
-      a->AddBdrFaceIntegrator(new DGDiffusionIntegrator(dt_diff_coeff, sigma, kappa));
-   }
-
-   int skip_zeros = 0;
-   m->Assemble(skip_zeros);
-   k->Assemble(skip_zeros);
-   s->Assemble(skip_zeros);
-   a->Assemble();
-
-   m->Finalize(skip_zeros);
-   k->Finalize(skip_zeros);
-   s->Finalize(skip_zeros);
-   a->Finalize(skip_zeros);
-   HypreParVector b(fes);
-   b = 0.0;
-
-   // 9. Define the initial conditions. Set up visualization (if desired).
-   std::unique_ptr<FunctionCoefficient> u0;
-   if (0==problem)
-   {
-      u0.reset(new FunctionCoefficient(u0_function<0>));
-   }
-   else if (1==problem)
-   {
-      u0.reset(new FunctionCoefficient(u0_function<1>));
-   }
-   else if (2==problem)
-   {
-      u0.reset(new FunctionCoefficient(u0_function<2>));
-   }
-   else if (3==problem)
-   {
-      u0.reset(new FunctionCoefficient(u0_function<3>));
-   }
-   ParGridFunction *u = new ParGridFunction(fes);
-   u->ProjectCoefficient(*u0);
-   HypreParVector *U = u->GetTrueDofs();
-
-   DataCollection *dc = NULL;
-   if (visit)
-   {
-      if (binary)
-      {
-#ifdef MFEM_USE_SIDRE
-         dc = new SidreDataCollection("Example41-Parallel", pmesh);
-#else
-         MFEM_ABORT("Must build with MFEM_USE_SIDRE=YES for binary output.");
-#endif
-      }
-      else
-      {
-         dc = new VisItDataCollection("Example41-Parallel", pmesh);
-         dc->SetPrecision(precision);
-         // To save the mesh using MFEM's parallel mesh format:
-         // dc->SetFormat(DataCollection::PARALLEL_FORMAT);
-      }
-      dc->RegisterField("solution", u);
-      dc->SetCycle(0);
-      dc->SetTime(0.0);
-      dc->Save();
-   }
-   ParaViewDataCollection *pd = NULL;
-   if (paraview)
-   {
-      pd = new ParaViewDataCollection("Example41P", pmesh);
-      pd->SetPrefixPath("ParaView");
-      pd->RegisterField("solution", u);
-      pd->SetLevelsOfDetail(order);
-      pd->SetDataFormat(VTKFormat::BINARY);
-      pd->SetHighOrderOutput(true);
-      pd->SetCycle(0);
-      pd->SetTime(0.0);
-      pd->Save();
-   }
-   socketstream sout;
-   if (visualization)
-   {
-      char vishost[] = "localhost";
-      int  visport   = 19916;
-      sout.open(vishost, visport);
-      if (!sout)
-      {
-         if (Mpi::Root())
-         {
-            cout << "Unable to connect to GLVis server at "
-                 << vishost << ':' << visport << endl;
-         }
-         visualization = false;
-         if (Mpi::Root())
-         {
-            cout << "GLVis visualization disabled.\n";
-         }
-      }
-      else
-      {
-         sout << "parallel " << num_procs << " " << myid << "\n";
-         sout.precision(precision);
-         sout << "solution\n" << *pmesh << *u;
-         sout << "pause\n";
-         sout << flush;
-         if (Mpi::Root())
-         {
-            cout << "GLVis visualization paused."
-                 << " Press space (in the GLVis window) to resume it.\n";
-         }
-      }
-   }
-#ifdef MFEM_USE_ADIOS2
-   ADIOS2DataCollection *adios2_dc = NULL;
-   if (adios2)
-   {
-      std::string postfix(mesh_file);
-      postfix.erase(0, std::string("../data/").size() );
-      postfix += "_o" + std::to_string(order);
-      const std::string collection_name = "ex41-p-" + postfix + ".bp";
-
-      adios2_dc = new ADIOS2DataCollection(MPI_COMM_WORLD, collection_name, pmesh);
-      // output data substreams are half the number of mpi processes
-      adios2_dc->SetParameter("SubStreams", std::to_string(num_procs/2) );
-      // adios2_dc->SetLevelsOfDetail(2);
-      adios2_dc->RegisterField("solution", u);
-      adios2_dc->SetCycle(0);
-      adios2_dc->SetTime(0.0);
-      adios2_dc->Save();
-   }
-#endif
-
-
-   // 10. Define the time-dependent evolution operator describing the
-   //     ODE right-hand side, and perform time-integration (looping
-   //     over the time iterations, ti, with a time-step dt).
-   IMEX_Evolution adv(*m, *k, *s, b, *a);
-
-   real_t t = 0.0;
-   adv.SetTime(t);
-   ode_solver->Init(adv);
-
-
-   bool done = false;
-   for (int ti = 0; !done; )
-   {
-      real_t dt_real = min(dt, t_final - t);
-      ode_solver->Step(*U, t, dt_real);
-      ti++;
-
-      done = (t >= t_final - 1e-8*dt);
-
-      if (done || ti % vis_steps == 0)
-      {
-         if (Mpi::Root())
-         {
-            cout << "time step: " << ti << ", time: " << t << endl;
-         }
-         *u = *U;
-         if (visualization)
-         {
-            sout << "parallel " << num_procs << " " << myid << "\n";
-            sout << "solution\n" << *pmesh << *u << flush;
-         }
-         if (paraview)
-         {
-            pd->SetCycle(ti);
-            pd->SetTime(t);
-            pd->Save();
-         }
-#ifdef MFEM_USE_ADIOS2
-         // transient solutions can be visualized with ParaView
-         if (adios2)
-         {
-            adios2_dc->SetCycle(ti);
-            adios2_dc->SetTime(t);
-            adios2_dc->Save();
-         }
-#endif
-      }
-   }
-
-   // 11. Free the used memory.
-   delete pd;
-   delete U;
-   delete u;
-   delete a;
-   delete s;
-   delete k;
-   delete m;
-   delete fes;
-   delete pmesh;
-   delete dc;
-   delete fec;
-
-   return 0;
-}
-
-// Implementation of class IMEX_Evolution
-IMEX_Evolution::IMEX_Evolution(ParBilinearForm &M_, ParBilinearForm &K_,
-                               ParBilinearForm &S_, const Vector &b_, ParBilinearForm &A_)
-   : TimeDependentOperator(M_.ParFESpace()->GetTrueVSize()), b(b_),
-     M_solver(M_.ParFESpace()->GetComm()), z(height), w(height)
-{
-   if (M_.GetAssemblyLevel()==AssemblyLevel::LEGACY)
-   {
-      M.Reset(M_.ParallelAssemble(), true);
-      K.Reset(K_.ParallelAssemble(), true);
-      S.Reset(S_.ParallelAssemble(), true);
-   }
-   else
-   {
-      M.Reset(&M_, false);
-      K.Reset(&K_, false);
-      S.Reset(&S_, false);
-   }
-
-   M_solver.SetOperator(*M);
-
-   Array<int> ess_tdof_list;
-   if (M_.GetAssemblyLevel() == AssemblyLevel::LEGACY)
-   {
-      A.Reset(A_.ParallelAssemble(), true);
-      HypreParMatrix &M_mat = *M.As<HypreParMatrix>();
-      HypreParMatrix &S_mat = *S.As<HypreParMatrix>();
-      HypreSmoother *hypre_prec = new HypreSmoother(M_mat, HypreSmoother::Jacobi);
-      M_prec = hypre_prec;
-
-      implicit_solver = new Implicit_Solver(M_mat, S_mat, *M_.FESpace());
-      lor_solver = new LORSolver<HypreBoomerAMG>(A_, ess_tdof_list);
-      lor_solver->GetSolver().SetSystemsOptions(A_.ParFESpace()->GetVDim(), true);
-      implicit_solver -> SetPreconditioner(*lor_solver);
-   }
-   else
-   {
-      MFEM_ABORT("Implicit time integration is not supported with partial assembly");
-   }
-   M_solver.SetPreconditioner(*M_prec);
-   M_solver.iterative_mode = false;
-   M_solver.SetRelTol(1e-9);
-   M_solver.SetAbsTol(0.0);
-   M_solver.SetMaxIter(100);
-   M_solver.SetPrintLevel(0);
-}
-
-void IMEX_Evolution::Mult1(const Vector &x, Vector &y) const
-{
-   // Perform the explicit step
-   // y = M^{-1} (K x + b)
-   K->Mult(x, z);
-   z += b;
-   M_solver.Mult(z, y);
-}
-
-void IMEX_Evolution::ImplicitSolve2(const real_t dt, const Vector &x, Vector &k)
-{
-   // Perform the implicit step
-   // solve for k, k = -(M+dt S)^{-1} S x
-   MFEM_VERIFY(implicit_solver != NULL,
-               "Implicit time integration is not supported with partial assembly");
-   S->Mult(x, z);
-   z*= -1.0;
-   implicit_solver->SetTimeStep(dt);
-   implicit_solver->Mult(z, k);
-}

examples/ex4p.cpp

@@ -9,7 +9,6 @@
 //               mpirun -np 4 ex4p -m ../data/beam-hex.mesh -o 2 -pa
 //               mpirun -np 4 ex4p -m ../data/escher.mesh -o 2 -sc
 //               mpirun -np 4 ex4p -m ../data/fichera.mesh -o 2 -hb
-//               mpirun -np 4 ex4p -m ../data/fichera.mesh -o 2 -hb -ea
 //               mpirun -np 4 ex4p -m ../data/fichera-q2.vtk
 //               mpirun -np 4 ex4p -m ../data/fichera-q3.mesh -o 2 -sc
 //               mpirun -np 4 ex4p -m ../data/square-disc-nurbs.mesh -o 3
@@ -18,18 +17,14 @@
 //               mpirun -np 4 ex4p -m ../data/periodic-cube.mesh -no-bc
 //               mpirun -np 4 ex4p -m ../data/amr-quad.mesh
 //               mpirun -np 3 ex4p -m ../data/amr-quad.mesh -o 2 -hb
-//               mpirun -np 3 ex4p -m ../data/amr-quad.mesh -o 2 -hb -ea
 //               mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -sc
 //               mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -hb
-//               mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -hb -ea
 //               mpirun -np 4 ex4p -m ../data/ref-prism.mesh -o 1
 //               mpirun -np 4 ex4p -m ../data/octahedron.mesh -o 1
 //               mpirun -np 4 ex4p -m ../data/star-surf.mesh -o 3 -hb
 //
 // Device sample runs:
 //               mpirun -np 4 ex4p -m ../data/star.mesh -pa -d cuda
-//               mpirun -np 4 ex4p -m ../data/star.mesh -ea -hb -d cuda
-//               mpirun -np 4 ex4p -m ../data/amr-hex.mesh -ea -hb -d cuda
 //               mpirun -np 4 ex4p -m ../data/star.mesh -pa -d raja-cuda
 //               mpirun -np 4 ex4p -m ../data/star.mesh -pa -d raja-omp
 //               mpirun -np 4 ex4p -m ../data/beam-hex.mesh -pa -d cuda
@@ -235,7 +230,7 @@ int main(int argc, char *argv[])
    pcg->SetMaxIter(2000);
    pcg->SetPrintLevel(1);
    if (hybridization) { prec = new HypreBoomerAMG(*A.As<HypreParMatrix>()); }
-   else if (pa || ea) { prec = new OperatorJacobiSmoother(*a, ess_tdof_list); }
+   else if (pa) { prec = new OperatorJacobiSmoother(*a, ess_tdof_list); }
    else
    {
       ParFiniteElementSpace *prec_fespace =

examples/ex9.cpp

@@ -160,7 +160,6 @@ int main(int argc, char *argv[])
    bool paraview = false;
    bool binary = false;
    int vis_steps = 5;
-   bool solve_implicit_state = false;
 
    int precision = 8;
    cout.precision(precision);
@@ -188,9 +187,6 @@ int main(int argc, char *argv[])
                   "Final time; start time is 0.");
    args.AddOption(&dt, "-dt", "--time-step",
                   "Time step.");
-   args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
-                  "-imp-slope", "--implicit-slope",
-                  "Implicitly solve for stage state or slope.");
    args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
                   "--no-visualization",
                   "Enable or disable GLVis visualization.");
@@ -370,11 +366,6 @@ int main(int argc, char *argv[])
    //    right-hand side, and perform time-integration (looping over the time
    //    iterations, ti, with a time-step dt).
    FE_Evolution adv(m, k, b);
-   using ImplicitVariableType = FE_Evolution::ImplicitVariableType;
-   ImplicitVariableType imp_var = solve_implicit_state ?
-                                  ImplicitVariableType::STATE
-                                  : ImplicitVariableType::SLOPE;
-   adv.SetImplicitVariableType(imp_var);
 
    real_t t = 0.0;
    adv.SetTime(t);
@@ -468,17 +459,7 @@ void FE_Evolution::ImplicitSolve(const real_t dt, const Vector &x, Vector &k)
 {
    MFEM_VERIFY(dg_solver != NULL,
                "Implicit time integration is not supported with partial assembly");
-   // Construct current right-hand side for stage state vs. slope solve
-   if (ImplicitVarTypeIsState())
-   {
-      // k, on return, is the stage value u
-      M.Mult(x, z);
-   }
-   else
-   {
-      // k, on return, is the stage slope du/dt
-      K.Mult(x, z);
-   }
+   K.Mult(x, z);
    z += b;
    dg_solver->SetTimeStep(dt);
    dg_solver->Mult(z, k);

examples/ex9p.cpp

@@ -257,7 +257,6 @@ int main(int argc, char *argv[])
    bool adios2 = false;
    bool binary = false;
    int vis_steps = 5;
-   bool solve_implicit_state = false;
 #if MFEM_HYPRE_VERSION >= 21800
    PrecType prec_type = PrecType::AIR;
 #else
@@ -291,9 +290,6 @@ int main(int argc, char *argv[])
                   "Final time; start time is 0.");
    args.AddOption(&dt, "-dt", "--time-step",
                   "Time step.");
-   args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
-                  "-imp-slope", "--implicit-slope",
-                  "Implicitly solve for stage state or slope.");
    args.AddOption((int *)&prec_type, "-pt", "--prec-type", "Preconditioner for "
                   "implicit solves. 0 for ILU, 1 for pAIR-AMG.");
    args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
@@ -540,11 +536,6 @@ int main(int argc, char *argv[])
    //     right-hand side, and perform time-integration (looping over the time
    //     iterations, ti, with a time-step dt).
    FE_Evolution adv(*m, *k, *B, prec_type);
-   using ImplicitVariableType = FE_Evolution::ImplicitVariableType;
-   ImplicitVariableType imp_var = solve_implicit_state ?
-                                  ImplicitVariableType::STATE
-                                  : ImplicitVariableType::SLOPE;
-   adv.SetImplicitVariableType(imp_var);
 
    real_t t = 0.0;
    adv.SetTime(t);
@@ -685,17 +676,7 @@ FE_Evolution::FE_Evolution(ParBilinearForm &M_, ParBilinearForm &K_,
 //    (M - dt*K) d = K*u + b
 void FE_Evolution::ImplicitSolve(const real_t dt, const Vector &x, Vector &k)
 {
-   // Construct current right-hand side for stage state vs. slope solve
-   if (ImplicitVarTypeIsState())
-   {
-      // k, on return, is the stage value u
-      M->Mult(x, z);
-   }
-   else
-   {
-      // k, on return, is the stage slope du/dt
-      K->Mult(x, z);
-   }
+   K->Mult(x, z);
    z += b;
    dg_solver->SetTimeStep(dt);
    dg_solver->Mult(z, k);

examples/ginkgo/CMakeLists.txt

@@ -14,12 +14,6 @@ list(APPEND GINKGO_EXAMPLES_SRCS
   ex1.cpp
 )
 
-if (MFEM_USE_MPI AND GINKGO_BUILD_MPI)
-    list(APPEND GINKGO_EXAMPLES_SRCS
-    ex1p.cpp
-)
-endif()
-
 # Include the source directory where mfem.hpp and mfem-performance.hpp are.
 include_directories(BEFORE ${PROJECT_BINARY_DIR})
 

examples/ginkgo/ex1.cpp

@@ -207,7 +207,7 @@ int main(int argc, char *argv[])
             Ginkgo::IcPreconditioner ginkgo_precond(exec, "paric", 30);
             Ginkgo::CGSolver ginkgo_solver(exec, ginkgo_precond);
             ginkgo_solver.SetPrintLevel(print_lvl);
-            ginkgo_solver.SetRelTol(sqrt(1e-12));
+            ginkgo_solver.SetRelTol(1e-12);
             ginkgo_solver.SetAbsTol(0.0);
             ginkgo_solver.SetMaxIter(400);
             ginkgo_solver.SetOperator(*(A.Ptr()));
@@ -225,7 +225,7 @@ int main(int argc, char *argv[])
             Ginkgo::MFEMPreconditioner gko_M(exec, M);
             Ginkgo::CGSolver ginkgo_solver(exec, gko_M);
             ginkgo_solver.SetPrintLevel(print_lvl);
-            ginkgo_solver.SetRelTol(sqrt(1e-12));
+            ginkgo_solver.SetRelTol(1e-12);
             ginkgo_solver.SetAbsTol(0.0);
             ginkgo_solver.SetMaxIter(400);
             ginkgo_solver.SetOperator(*(A.Ptr()));
@@ -283,7 +283,7 @@ int main(int argc, char *argv[])
                Ginkgo::MFEMPreconditioner gko_M(exec, M);
                Ginkgo::CGSolver ginkgo_solver(exec, gko_M);
                ginkgo_solver.SetPrintLevel(print_lvl);
-               ginkgo_solver.SetRelTol(sqrt(1e-12));
+               ginkgo_solver.SetRelTol(1e-12);
                ginkgo_solver.SetAbsTol(0.0);
                ginkgo_solver.SetMaxIter(400);
                ginkgo_solver.SetOperator(*(A.Ptr()));

examples/ginkgo/ex1p.cpp

@@ -1,436 +0,0 @@
-//                       MFEM Example 1 - Parallel Version
-//                             GINKGO Modification
-//
-// Compile with: make ex1p
-//
-// Sample runs:  mpirun -np 4 ex1p -m ../data/square-disc.mesh
-//               mpirun -np 4 ex1p -m ../data/star.mesh
-//               mpirun -np 4 ex1p -m ../data/star-mixed.mesh
-//               mpirun -np 4 ex1p -m ../data/escher.mesh
-//               mpirun -np 4 ex1p -m ../data/fichera.mesh
-//               mpirun -np 4 ex1p -m ../data/fichera-mixed.mesh
-//               mpirun -np 4 ex1p -m ../data/toroid-wedge.mesh
-//               mpirun -np 4 ex1p -m ../data/octahedron.mesh -o 1
-//               mpirun -np 4 ex1p -m ../data/periodic-annulus-sector.msh
-//               mpirun -np 4 ex1p -m ../data/periodic-torus-sector.msh
-//               mpirun -np 4 ex1p -m ../data/square-disc-p2.vtk -o 2
-//               mpirun -np 4 ex1p -m ../data/square-disc-p3.mesh -o 3
-//               mpirun -np 4 ex1p -m ../data/square-disc-nurbs.mesh -o -1
-//               mpirun -np 4 ex1p -m ../data/star-mixed-p2.mesh -o 2
-//               mpirun -np 4 ex1p -m ../data/disc-nurbs.mesh -o -1
-//               mpirun -np 4 ex1p -m ../data/pipe-nurbs.mesh -o -1
-//               mpirun -np 4 ex1p -m ../data/ball-nurbs.mesh -o 2
-//               mpirun -np 4 ex1p -m ../data/fichera-mixed-p2.mesh -o 2
-//               mpirun -np 4 ex1p -m ../data/star-surf.mesh
-//               mpirun -np 4 ex1p -m ../data/square-disc-surf.mesh
-//               mpirun -np 4 ex1p -m ../data/inline-segment.mesh
-//               mpirun -np 4 ex1p -m ../data/amr-quad.mesh
-//               mpirun -np 4 ex1p -m ../data/amr-hex.mesh
-//               mpirun -np 4 ex1p -m ../data/mobius-strip.mesh
-//               mpirun -np 4 ex1p -m ../data/mobius-strip.mesh -o -1 -sc
-//
-// Device sample runs:
-//               mpirun -np 4 ex1p -pa -d cuda
-//               mpirun -np 4 ex1p -fa -d cuda
-//               mpirun -np 4 ex1p -pa -d occa-cuda
-//               mpirun -np 4 ex1p -pa -d raja-omp
-//               mpirun -np 4 ex1p -pa -d ceed-cpu
-//               mpirun -np 4 ex1p -pa -d ceed-cpu -o 4 -a
-//               mpirun -np 4 ex1p -pa -d ceed-cpu -m ../data/square-mixed.mesh
-//               mpirun -np 4 ex1p -pa -d ceed-cpu -m ../data/fichera-mixed.mesh
-//             * mpirun -np 4 ex1p -pa -d ceed-cuda
-//             * mpirun -np 4 ex1p -pa -d ceed-hip
-//               mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared
-//               mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/square-mixed.mesh
-//               mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/fichera-mixed.mesh
-//               mpirun -np 4 ex1p -m ../data/beam-tet.mesh -pa -d ceed-cpu
-//
-// Description:  This example code demonstrates the use of MFEM to define a
-//               simple finite element discretization of the Laplace problem
-//               -Delta u = 1 with homogeneous Dirichlet boundary conditions.
-//               Specifically, we discretize using a FE space of the specified
-//               order, or if order < 1 using an isoparametric/isogeometric
-//               space (i.e. quadratic for quadratic curvilinear mesh, NURBS for
-//               NURBS mesh, etc.)
-//
-//               The example highlights the use of mesh refinement, finite
-//               element grid functions, as well as linear and bilinear forms
-//               corresponding to the left-hand side and right-hand side of the
-//               discrete linear system. We also cover the explicit elimination
-//               of essential boundary conditions, static condensation, and the
-//               optional connection to the GLVis tool for visualization.
-
-#include "mfem.hpp"
-#include <fstream>
-#include <iostream>
-
-#ifndef MFEM_USE_GINKGO
-#error This example requires that MFEM is built with MFEM_USE_GINKGO=YES
-#endif
-
-using namespace std;
-using namespace mfem;
-
-int main(int argc, char *argv[])
-{
-   // 1. Initialize MPI and HYPRE.
-   Mpi::Init();
-   int num_procs = Mpi::WorldSize();
-   int myid = Mpi::WorldRank();
-   Hypre::Init();
-
-   // 2. Parse command-line options.
-   const char *mesh_file = "../../data/star.mesh";
-   int order = 1;
-   bool static_cond = false;
-   bool pa = false;
-   bool fa = false;
-   const char *device_config = "cpu";
-   bool visualization = true;
-   int solver_config = 0;
-   int print_lvl = 1;
-
-   OptionsParser args(argc, argv);
-   args.AddOption(&mesh_file, "-m", "--mesh",
-                  "Mesh file to use.");
-   args.AddOption(&order, "-o", "--order",
-                  "Finite element order (polynomial degree) or -1 for"
-                  " isoparametric space.");
-   args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
-                  "--no-static-condensation", "Enable static condensation.");
-   args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
-                  "--no-partial-assembly", "Enable Partial Assembly.");
-   args.AddOption(&fa, "-fa", "--full-assembly", "-no-fa",
-                  "--no-full-assembly", "Enable Full Assembly.");
-   args.AddOption(&device_config, "-d", "--device",
-                  "Device configuration string, see Device::Configure().");
-   args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
-                  "--no-visualization",
-                  "Enable or disable GLVis visualization.");
-   args.AddOption(&solver_config, "-s", "--solver-config",
-                  "Solver and preconditioner combination: \n\t"
-                  "   0 - Ginkgo solver and Ginkgo preconditioner, \n\t"
-                  "   1 - Ginkgo solver and MFEM preconditioner, \n\t"
-                  "   2 - MFEM solver and Ginkgo preconditioner, \n\t"
-                  "   3 - MFEM solver and MFEM preconditioner.");
-   args.AddOption(&print_lvl, "-pl", "--print-level",
-                  "Print level for iterative solver (1 prints every iteration).");
-   args.Parse();
-   if (!args.Good())
-   {
-      if (myid == 0)
-      {
-         args.PrintUsage(cout);
-      }
-      return 1;
-   }
-   if (myid == 0)
-   {
-      args.PrintOptions(cout);
-   }
-
-   // 3. Enable hardware devices such as GPUs, and programming models such as
-   //    CUDA, OCCA, RAJA and OpenMP based on command line options.
-   Device device(device_config);
-   device.SetGPUAwareMPI(true);
-   if (myid == 0) { device.Print(); }
-
-   // 4. Read the (serial) mesh from the given mesh file on all processors.  We
-   //    can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
-   //    and volume meshes with the same code.
-   Mesh mesh(mesh_file, 1, 1);
-   int dim = mesh.Dimension();
-
-   // 5. Refine the serial mesh on all processors to increase the resolution. In
-   //    this example we do 'ref_levels' of uniform refinement. We choose
-   //    'ref_levels' to be the largest number that gives a final mesh with no
-   //    more than 10,000 elements.
-   {
-      int ref_levels =
-         (int)floor(log(10000./mesh.GetNE())/log(2.)/dim);
-      for (int l = 0; l < ref_levels; l++)
-      {
-         mesh.UniformRefinement();
-      }
-   }
-
-   // 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
-   //    this mesh further in parallel to increase the resolution. Once the
-   //    parallel mesh is defined, the serial mesh can be deleted.
-   ParMesh pmesh(MPI_COMM_WORLD, mesh);
-   mesh.Clear();
-   {
-      int par_ref_levels = 2;
-      for (int l = 0; l < par_ref_levels; l++)
-      {
-         pmesh.UniformRefinement();
-      }
-   }
-
-   // 7. Define a parallel finite element space on the parallel mesh. Here we
-   //    use continuous Lagrange finite elements of the specified order. If
-   //    order < 1, we instead use an isoparametric/isogeometric space.
-   FiniteElementCollection *fec;
-   bool delete_fec;
-   if (order > 0)
-   {
-      fec = new H1_FECollection(order, dim);
-      delete_fec = true;
-   }
-   else if (pmesh.GetNodes())
-   {
-      fec = pmesh.GetNodes()->OwnFEC();
-      delete_fec = false;
-      if (myid == 0)
-      {
-         cout << "Using isoparametric FEs: " << fec->Name() << endl;
-      }
-   }
-   else
-   {
-      fec = new H1_FECollection(order = 1, dim);
-      delete_fec = true;
-   }
-   ParFiniteElementSpace fespace(&pmesh, fec);
-   HYPRE_BigInt size = fespace.GlobalTrueVSize();
-   if (myid == 0)
-   {
-      cout << "Number of finite element unknowns: " << size << endl;
-   }
-
-   // 8. Determine the list of true (i.e. parallel conforming) essential
-   //    boundary dofs. In this example, the boundary conditions are defined
-   //    by marking all the boundary attributes from the mesh as essential
-   //    (Dirichlet) and converting them to a list of true dofs.
-   Array<int> ess_tdof_list;
-   if (pmesh.bdr_attributes.Size())
-   {
-      Array<int> ess_bdr(pmesh.bdr_attributes.Max());
-      ess_bdr = 1;
-      fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
-   }
-
-   // 9. Set up the parallel linear form b(.) which corresponds to the
-   //    right-hand side of the FEM linear system, which in this case is
-   //    (1,phi_i) where phi_i are the basis functions in fespace.
-   ParLinearForm b(&fespace);
-   ConstantCoefficient one(1.0);
-   b.AddDomainIntegrator(new DomainLFIntegrator(one));
-   b.Assemble();
-
-   // 10. Define the solution vector x as a parallel finite element grid
-   //     function corresponding to fespace. Initialize x with initial guess of
-   //     zero, which satisfies the boundary conditions.
-   ParGridFunction x(&fespace);
-   x = 0.0;
-
-   // 11. Set up the parallel bilinear form a(.,.) on the finite element space
-   //     corresponding to the Laplacian operator -Delta, by adding the
-   //     Diffusion domain integrator.
-   ParBilinearForm a(&fespace);
-   if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
-   if (fa)
-   {
-      a.SetAssemblyLevel(AssemblyLevel::FULL);
-      // Sort the matrix column indices when running on GPU or with OpenMP (i.e.
-      // when Device::IsEnabled() returns true). This makes the results
-      // bit-for-bit deterministic at the cost of somewhat longer run time.
-      a.EnableSparseMatrixSorting(Device::IsEnabled());
-   }
-   a.AddDomainIntegrator(new DiffusionIntegrator(one));
-
-   // 12. Assemble the parallel bilinear form and the corresponding linear
-   //     system, applying any necessary transformations such as: parallel
-   //     assembly, eliminating boundary conditions, applying conforming
-   //     constraints for non-conforming AMR, static condensation, etc.
-   if (static_cond) { a.EnableStaticCondensation(); }
-   a.Assemble();
-
-   OperatorPtr A;
-   Vector B, X;
-   a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
-
-   // 13. Solve the linear system A X = B.
-   if (!pa)
-   {
-      switch (solver_config)
-      {
-         // Solve the linear system with CG + Schwarz (with IC) from Ginkgo
-         case 0:
-         {
-            if (myid == 0) { cout << "Using Ginkgo solver + preconditioner...\n"; }
-            Ginkgo::GinkgoExecutor exec(device);
-            Ginkgo::IcPreconditioner local_solver(exec, "exact");
-            Ginkgo::SchwarzPreconditioner gko_M(exec, MPI_COMM_WORLD, local_solver);
-            Ginkgo::CGSolver ginkgo_solver(exec, MPI_COMM_WORLD, gko_M);
-            ginkgo_solver.SetPrintLevel(print_lvl);
-            ginkgo_solver.SetRelTol(sqrt(1e-12));
-            ginkgo_solver.SetAbsTol(0.0);
-            ginkgo_solver.SetMaxIter(400);
-            ginkgo_solver.SetOperator(*(A.Ptr()));
-            ginkgo_solver.Mult(B, X);
-            break;
-         }
-
-         // Solve the linear system with CG from Ginkgo + MFEM preconditioner
-         case 1:
-         {
-            if (myid == 0) { cout << "Using Ginkgo solver + MFEM preconditioner...\n"; }
-            Ginkgo::GinkgoExecutor exec(device);
-            //Create MFEM preconditioner and wrap it for Ginkgo's use.
-            HypreBoomerAMG M((HypreParMatrix&)(*A));
-            Ginkgo::MFEMPreconditioner gko_M(exec, M, MPI_COMM_WORLD);
-            Ginkgo::CGSolver ginkgo_solver(exec, MPI_COMM_WORLD, gko_M);
-            ginkgo_solver.SetPrintLevel(print_lvl);
-            ginkgo_solver.SetRelTol(sqrt(1e-12));
-            ginkgo_solver.SetAbsTol(0.0);
-            ginkgo_solver.SetMaxIter(400);
-            ginkgo_solver.SetOperator(*(A.Ptr()));
-            ginkgo_solver.Mult(B, X);
-            break;
-         }
-
-         // Ginkgo Schwarz preconditioner (local ParIC) +  MFEM CG solver
-         case 2:
-         {
-            if (myid == 0) { cout << "Using MFEM solver + Ginkgo preconditioner...\n"; }
-            Ginkgo::GinkgoExecutor exec(device);
-            Ginkgo::IcPreconditioner local_M(exec, "exact");
-            Ginkgo::SchwarzPreconditioner M(exec, MPI_COMM_WORLD, local_M);
-            M.SetOperator(*(A.Ptr()));  // Generate the preconditioner for the matrix A.
-            CGSolver cg(MPI_COMM_WORLD);
-            cg.SetRelTol(sqrt(1e-12));
-            cg.SetMaxIter(400);
-            cg.SetPrintLevel(1);
-            cg.SetPreconditioner(M);
-            cg.SetOperator(*A);
-            cg.Mult(B, X);
-            break;
-         }
-
-         // MFEM solver + MFEM preconditioner
-         case 3:
-         {
-            if (myid == 0) { cout << "Using MFEM solver + MFEM preconditioner...\n"; }
-            HypreBoomerAMG M((HypreParMatrix&)(*A));
-            CGSolver cg(MPI_COMM_WORLD);
-            cg.SetRelTol(sqrt(1e-12));
-            cg.SetMaxIter(400);
-            cg.SetPrintLevel(1);
-            cg.SetPreconditioner(M);
-            cg.SetOperator(*A);
-            cg.Mult(B, X);
-            break;
-         }
-      } // End switch on solver_config
-   }
-   // Partial assembly mode.  Cannot use Ginkgo preconditioners, but can use Ginkgo
-   // solvers.
-   else
-   {
-      if (UsesTensorBasis(fespace))
-      {
-         // Use Jacobi preconditioning in partial assembly mode.
-         OperatorJacobiSmoother M(a, ess_tdof_list);
-         switch (solver_config)
-         {
-            case 0:
-            {
-               if (myid == 0) { cout << "Using Ginkgo solver + preconditioner...\n"; }
-               MFEM_ABORT("Cannot use Ginkgo preconditioner in partial assembly mode.\n"
-                          "            Try -s 1 to test Ginkgo solver with an MFEM preconditioner.");
-               break;
-            }
-
-            // Use Ginkgo solver with MFEM preconditioner
-            case 1:
-            {
-               if (myid == 0) { cout << "Using Ginkgo solver + MFEM preconditioner...\n"; }
-               Ginkgo::GinkgoExecutor exec(device);
-               // Wrap MFEM preconditioner for Ginkgo's use.
-               Ginkgo::MFEMPreconditioner gko_M(exec, M, MPI_COMM_WORLD);
-               Ginkgo::CGSolver ginkgo_solver(exec, MPI_COMM_WORLD, gko_M);
-               ginkgo_solver.SetPrintLevel(print_lvl);
-               ginkgo_solver.SetRelTol(sqrt(1e-12));
-               ginkgo_solver.SetAbsTol(0.0);
-               ginkgo_solver.SetMaxIter(400);
-               ginkgo_solver.SetOperator(*(A.Ptr()));
-               ginkgo_solver.Mult(B, X);
-               break;
-            }
-
-            // No Ginkgo preconditioners work with matrix-free; error
-            case 2:
-            {
-               if (myid == 0) { cout << "Using Ginkgo solver + preconditioner...\n"; }
-               MFEM_ABORT("Cannot use Ginkgo preconditioner in partial assembly mode.\n"
-                          "            Try -s 1 to test Ginkgo solver with an MFEM preconditioner.");
-               break;
-            }
-
-            // Use MFEM solver and preconditioner
-            case 3:
-            {
-               if (myid == 0) { cout << "Using MFEM solver + MFEM preconditioner...\n"; }
-               CGSolver cg(MPI_COMM_WORLD);
-               cg.SetRelTol(sqrt(1e-12));
-               cg.SetMaxIter(400);
-               cg.SetPrintLevel(1);
-               cg.SetPreconditioner(M);
-               cg.SetOperator(*A);
-               cg.Mult(B, X);
-               break;
-            }
-         } // End switch on solver_config
-      }
-      else // CG with no preconditioning
-      {
-         if (myid == 0) { cout << "Using MFEM solver + no preconditioner...\n"; }
-         CGSolver cg(MPI_COMM_WORLD);
-         cg.SetRelTol(sqrt(1e-12));
-         cg.SetMaxIter(400);
-         cg.SetPrintLevel(1);
-         cg.SetOperator(*A);
-         cg.Mult(B, X);
-      }
-   }
-
-   // 14. Recover the parallel grid function corresponding to X. This is the
-   //     local finite element solution on each processor.
-   a.RecoverFEMSolution(X, b, x);
-
-   // 15. Save the refined mesh and the solution in parallel. This output can
-   //     be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
-   {
-      ostringstream mesh_name, sol_name;
-      mesh_name << "mesh." << setfill('0') << setw(6) << myid;
-      sol_name << "sol." << setfill('0') << setw(6) << myid;
-
-      ofstream mesh_ofs(mesh_name.str().c_str());
-      mesh_ofs.precision(8);
-      pmesh.Print(mesh_ofs);
-
-      ofstream sol_ofs(sol_name.str().c_str());
-      sol_ofs.precision(8);
-      x.Save(sol_ofs);
-   }
-
-   // 16. Send the solution by socket to a GLVis server.
-   if (visualization)
-   {
-      char vishost[] = "localhost";
-      int  visport   = 19916;
-      socketstream sol_sock(vishost, visport);
-      sol_sock << "parallel " << num_procs << " " << myid << "\n";
-      sol_sock.precision(8);
-      sol_sock << "solution\n" << pmesh << x << flush;
-   }
-
-   // 17. Free the used memory.
-   if (delete_fec)
-   {
-      delete fec;
-   }
-
-   return 0;
-}

examples/ginkgo/makefile

@@ -20,8 +20,9 @@ CONFIG_MK = $(or $(wildcard $(MFEM_BUILD_DIR)/config/config.mk),\
 MFEM_LIB_FILE = mfem_is_not_built
 -include $(CONFIG_MK)
 
+# Currently there are only serial Ginkgo examples
 SEQ_EXAMPLES = ex1
-PAR_EXAMPLES = ex1p
+PAR_EXAMPLES =
 ifeq ($(MFEM_USE_MPI),NO)
    EXAMPLES = $(SEQ_EXAMPLES)
 else

examples/makefile

@@ -22,11 +22,11 @@ MFEM_LIB_FILE = mfem_is_not_built
 
 SEQ_EXAMPLES = ex0 ex1 ex2 ex3 ex4 ex5 ex6 ex7 ex8 ex9 ex10 ex14 ex15 ex16 \
    ex17 ex18 ex19 ex20 ex21 ex22 ex23 ex24 ex25 ex26 ex27 ex28 ex29 ex30 \
-   ex31 ex33 ex34 ex36 ex37 ex38 ex39 ex40 ex41
+   ex31 ex33 ex34 ex36 ex37 ex38 ex39 ex40
 PAR_EXAMPLES = ex0p ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex8p ex9p ex10p ex11p \
    ex12p ex13p ex14p ex15p ex16p ex17p ex18p ex19p ex20p ex21p ex22p ex24p \
    ex25p ex26p ex27p ex28p ex29p ex30p ex31p ex32p ex33p ex34p ex35p ex36p \
-   ex37p ex39p ex40p ex41p
+   ex37p ex39p ex40p
 SEQ_DEVICE_EXAMPLES = ex1 ex3 ex4 ex5 ex6 ex9 ex14 ex22 ex24 ex25 ex26 ex34
 PAR_DEVICE_EXAMPLES = ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex14p \
    ex22p ex24p ex25p ex26p ex34p ex35p
@@ -157,10 +157,6 @@ ex37-test-seq: ex37
 	@$(call mfem-test,$<,, Serial example,-mi 3)
 ex37p-test-par: ex37p
 	@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-mi 3)
-ex41-test-seq: ex41
-	@$(call mfem-test,$<,, Serial example,-tf 1.0)
-ex41p-test-par: ex41p
-	@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-tf 1.0)
 # Testing: optional tests
 ifeq ($(MFEM_USE_STRUMPACK),YES)
 ex11p-test-strumpack: ex11p
@@ -177,12 +173,6 @@ ex11p-test-cpardiso: ex11p
 	@$(call mfem-test,$<, $(RUN_MPI), MKL_CPARDISO example,--cpardiso)
 test-par-YES: ex11p-test-cpardiso
 endif
-ifeq ($(MFEM_USE_CEED),YES)
-ex1p-test-ceed: ex1p
-	@$(call mfem-test,$<, $(RUN_MPI),\
-	   Parallel libCEED example,-d ceed-cpu -pa -a)
-test-par-YES: ex1p-test-ceed
-endif
 
 # Testing: "test" target and mfem-test* variables are defined in config/test.mk
 
@@ -199,8 +189,8 @@ clean-build:
 clean-exec:
 	@rm -f refined.mesh displaced.mesh mesh.* ex5.mesh ex6p-checkpoint.*
 	@rm -rf Example5* Example9* Example15* Example16* Example23* ParaView
-	@rm -f sphere_refined.* sol.* sol_u.* sol_p.* sol_r.* sol_i.* sol_z.*
-	@rm -f order.* ex9.mesh ex9-mesh.* ex9-init.* ex9-final.*
+	@rm -f sphere_refined.* sol.* sol_u.* sol_p.* sol_r.* sol_i.* order.*
+	@rm -f ex9.mesh ex9-mesh.* ex9-init.* ex9-final.*
 	@rm -f deformed.* velocity.* elastic_energy.* mode_* mode_deriv_* flux.*
 	@rm -f ex5-p-*.bp ex9-p-*.bp ex12-p-*.bp ex16-p-*.bp
 	@rm -f ex16.mesh ex16-mesh.* ex16-init.* ex16-final.*

fem/CMakeLists.txt

@@ -73,7 +73,6 @@ set(SRCS
   fe/fe_base.cpp
   fe/fe_fixed_order.cpp
   fe/fe_h1.cpp
-  fe/fe_h1_bubble.cpp
   fe/fe_l2.cpp
   fe/fe_nd.cpp
   fe/fe_nurbs.cpp
@@ -129,46 +128,32 @@ set(SRCS
   normal_deriv_restriction.cpp
   staticcond.cpp
   tmop.cpp
-  tmop/pa.cpp
-  tmop/assemble/diag2_limit.cpp
-  tmop/assemble/diag2.cpp
-  tmop/assemble/grad2_limit.cpp
-  tmop/assemble/grad2.cpp
-  tmop/assemble/diag3_limit.cpp
-  tmop/assemble/diag3.cpp
-  tmop/assemble/grad3_limit.cpp
-  tmop/assemble/grad3.cpp
-  tmop/metrics/001.cpp
-  tmop/metrics/002.cpp
-  tmop/metrics/007.cpp
-  tmop/metrics/056.cpp
-  tmop/metrics/077.cpp
-  tmop/metrics/080.cpp
-  tmop/metrics/094.cpp
-  tmop/metrics/302.cpp
-  tmop/metrics/303.cpp
-  tmop/metrics/315.cpp
-  tmop/metrics/318.cpp
-  tmop/metrics/321.cpp
-  tmop/metrics/332.cpp
-  tmop/metrics/338.cpp
-  tmop/mult/grad2_limit.cpp
-  tmop/mult/grad2.cpp
-  tmop/mult/mult2_limit.cpp
-  tmop/mult/mult2.cpp
-  tmop/mult/grad3_limit.cpp
-  tmop/mult/grad3.cpp
-  tmop/mult/mult3_limit.cpp
-  tmop/mult/mult3.cpp
-  tmop/tools/det2_jpr.cpp
-  tmop/tools/det3_jpr.cpp
-  tmop/tools/discrete.cpp
-  tmop/tools/energy2_limit.cpp
-  tmop/tools/energy2.cpp
-  tmop/tools/energy3_limit.cpp
-  tmop/tools/energy3.cpp
-  tmop/tools/target2.cpp
-  tmop/tools/target3.cpp
+  tmop/tmop_pa.cpp
+  tmop/tmop_pa_da3.cpp
+  tmop/tmop_pa_h2d.cpp
+  tmop/tmop_pa_h2d_c0.cpp
+  tmop/tmop_pa_h2m.cpp
+  tmop/tmop_pa_h2m_c0.cpp
+  tmop/tmop_pa_h2s.cpp
+  tmop/tmop_pa_h2s_c0.cpp
+  tmop/tmop_pa_h3d.cpp
+  tmop/tmop_pa_h3d_c0.cpp
+  tmop/tmop_pa_h3m.cpp
+  tmop/tmop_pa_h3m_c0.cpp
+  tmop/tmop_pa_h3s.cpp
+  tmop/tmop_pa_h3s_c0.cpp
+  tmop/tmop_pa_jp2.cpp
+  tmop/tmop_pa_jp3.cpp
+  tmop/tmop_pa_p2.cpp
+  tmop/tmop_pa_p2_c0.cpp
+  tmop/tmop_pa_p3.cpp
+  tmop/tmop_pa_p3_c0.cpp
+  tmop/tmop_pa_tc2.cpp
+  tmop/tmop_pa_tc3.cpp
+  tmop/tmop_pa_w2.cpp
+  tmop/tmop_pa_w2_c0.cpp
+  tmop/tmop_pa_w3.cpp
+  tmop/tmop_pa_w3_c0.cpp
   tmop_tools.cpp
   tmop_amr.cpp
   gslib.cpp
@@ -180,26 +165,18 @@ set(SRCS
   hyperbolic.cpp
   integrator.cpp
   bounds.cpp
-  particleset.cpp
   )
 
 set(HDRS
   bilinearform.hpp
   bilinearform_ext.hpp
   bilininteg.hpp
-  integ/lininteg_domain_kernels.hpp
-  integ/bilininteg_dgdiffusion_kernels.hpp
-  integ/bilininteg_dgtrace_kernels.hpp
-  integ/bilininteg_vecdiffusion_kernels.hpp
-  integ/bilininteg_convection_kernels.hpp
   integ/bilininteg_diffusion_kernels.hpp
   integ/bilininteg_elasticity_kernels.hpp
   integ/bilininteg_hcurl_kernels.hpp
   integ/bilininteg_hdiv_kernels.hpp
   integ/bilininteg_hcurlhdiv_kernels.hpp
   integ/bilininteg_mass_kernels.hpp
-  integ/bilininteg_vecdiffusion_pa.hpp
-  integ/bilininteg_vecmass_pa.hpp
   coefficient.hpp
   complex_fem.hpp
   convergence.hpp
@@ -222,7 +199,6 @@ set(HDRS
   fe/fe_base.hpp
   fe/fe_fixed_order.hpp
   fe/fe_h1.hpp
-  fe/fe_h1_bubble.hpp
   fe/fe_l2.hpp
   fe/fe_nd.hpp
   fe/fe_nurbs.hpp
@@ -265,13 +241,8 @@ set(HDRS
   lor/lor_ams.hpp
   lor/lor_batched.hpp
   lor/lor_h1.hpp
-  lor/lor_dg.hpp
   lor/lor_nd.hpp
   lor/lor_rt.hpp
-  lor/lor_h1_impl.hpp
-  lor/lor_dg_impl.hpp
-  lor/lor_nd_impl.hpp
-  lor/lor_rt_impl.hpp
   lor/lor_util.hpp
   multigrid.hpp
   nonlinearform.hpp
@@ -298,12 +269,7 @@ set(HDRS
   tfespace.hpp
   tintrules.hpp
   tmop.hpp
-  tmop/pa.hpp
-  tmop/assemble/grad2.hpp
-  tmop/assemble/grad2.hpp
-  tmop/mult/mult2.hpp
-  tmop/mult/mult3.hpp
-  tmop/tools/energy2.hpp
+  tmop/tmop_pa.hpp
   tmop_tools.hpp
   tmop_amr.hpp
   gslib.hpp
@@ -311,7 +277,6 @@ set(HDRS
   hyperbolic.hpp
   integrator.hpp
   bounds.hpp
-  particleset.hpp
   )
 
 if (MFEM_USE_SIDRE)

fem/bilinearform.cpp

@@ -729,8 +729,7 @@ void BilinearForm::Assemble(int skip_zeros)
          tr = mesh -> GetBdrFaceTransformations (i);
          if (tr != NULL)
          {
-            mfem::DofTransformation doftrans;
-            fes -> GetElementVDofs (tr -> Elem1No, vdofs, doftrans);
+            fes -> GetElementVDofs (tr -> Elem1No, vdofs);
             fe1 = fes -> GetFE (tr -> Elem1No);
             // The fe2 object is really a dummy and not used on the boundaries,
             // but we can't dereference a NULL pointer, and we don't want to
@@ -744,7 +743,6 @@ void BilinearForm::Assemble(int skip_zeros)
 
                boundary_face_integs[k] -> AssembleFaceMatrix (*fe1, *fe2, *tr,
                                                               elemmat);
-               doftrans.TransformDual(elemmat);
                mat -> AddSubMatrix (vdofs, vdofs, elemmat, skip_zeros);
             }
          }
@@ -827,46 +825,14 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
                                     Vector &b, OperatorHandle &A, Vector &X,
                                     Vector &B, int copy_interior)
 {
-   const SparseMatrix *P = fes->GetConformingProlongation();
-   const SparseMatrix *R = fes->GetConformingRestriction();
    if (ext)
    {
       if (hybridization)
       {
          FormSystemMatrix(ess_tdof_list, A);
-
-         std::unique_ptr<ConstrainedOperator> A_constrained([&]()
-         {
-            Operator *op;
-            Operator::FormSystemOperator(ess_tdof_list, op);
-            return dynamic_cast<ConstrainedOperator*>(op);
-         }());
-         MFEM_ASSERT(A_constrained != nullptr, "");
-
-         Vector conf_b, conf_x;
-         if (P)
-         {
-            // Nonconforming
-            conf_b.SetSize(P->Width());
-            conf_x.SetSize(P->Width());
-            P->MultTranspose(b, conf_b);
-            R->Mult(x, conf_x);
-         }
-         else
-         {
-            // Conforming
-            conf_b.MakeRef(b, 0, b.Size());
-            conf_x.MakeRef(x, 0, x.Size());
-         }
-
-         A_constrained->EliminateRHS(conf_x, conf_b);
-
-         if (P)
-         {
-            R->MultTranspose(conf_b, b); // store eliminated rhs in b
-         }
-
-         hybridization->ReduceRHS(conf_b, B);
+         ConstrainedOperator A_constrained(this, ess_tdof_list);
+         A_constrained.EliminateRHS(x, b);
+         hybridization->ReduceRHS(b, B);
          X.SetSize(B.Size());
          X = 0.0;
       }
@@ -876,6 +842,7 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
       }
       return;
    }
+   const SparseMatrix *P = fes->GetConformingProlongation();
    FormSystemMatrix(ess_tdof_list, A);
 
    // Transform the system and perform the elimination in B, based on the
@@ -911,6 +878,7 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
       if (hybridization)
       {
          // Reduction to the Lagrange multipliers system
+         const SparseMatrix *R = fes->GetConformingRestriction();
          Vector conf_b(P->Width()), conf_x(P->Width());
          P->MultTranspose(b, conf_b);
          R->Mult(x, conf_x);
@@ -923,6 +891,7 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
       else
       {
          // Variational restriction with P
+         const SparseMatrix *R = fes->GetConformingRestriction();
          B.SetSize(P->Width());
          P->MultTranspose(b, B);
          X.SetSize(R->Height());
@@ -1306,6 +1275,22 @@ void BilinearForm::Update(FiniteElementSpace *nfes)
    height = width = fes->GetVSize();
 
    if (ext) { ext->Update(); }
+   for (int k = 0; k < domain_integs.Size(); ++k)
+   {
+      domain_integs[k]->Update();
+   }
+   for (int k = 0; k < boundary_integs.Size(); ++k)
+   {
+      boundary_integs[k]->Update();
+   }
+   for (int k = 0; k < interior_face_integs.Size(); ++k)
+   {
+      interior_face_integs[k]->Update();
+   }
+   for (int k = 0; k < boundary_integs.Size(); ++k)
+   {
+      boundary_face_integs[k]->Update();
+   }
 }
 
 void BilinearForm::SetDiagonalPolicy(DiagonalPolicy policy)
@@ -1725,7 +1710,6 @@ void MixedBilinearForm::Assemble(int skip_zeros)
          }
       }
 
-      DofTransformation dom_dof_trans, ran_dof_trans;
       for (int i = 0; i < trial_fes -> GetNBE(); i++)
       {
          const int bdr_attr = mesh->GetBdrAttribute(i);
@@ -1734,8 +1718,8 @@ void MixedBilinearForm::Assemble(int skip_zeros)
          ftr = mesh -> GetBdrFaceTransformations (i);
          if (ftr != NULL)
          {
-            trial_fes->GetElementVDofs(ftr->Elem1No, trial_vdofs, dom_dof_trans);
-            test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs, ran_dof_trans);
+            trial_fes->GetElementVDofs(ftr->Elem1No, trial_vdofs);
+            test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs);
             trial_fe1 = trial_fes->GetFE(ftr->Elem1No);
             test_fe1 = test_fes->GetFE(ftr->Elem1No);
             // The test_fe2 object is really a dummy and not used on the
@@ -1751,7 +1735,6 @@ void MixedBilinearForm::Assemble(int skip_zeros)
                boundary_face_integs[k]->AssembleFaceMatrix(*trial_fe1, *test_fe1, *trial_fe2,
                                                            *test_fe2,
                                                            *ftr, elemmat);
-               TransformDual(ran_dof_trans, dom_dof_trans, elemmat);
                mat->AddSubMatrix(test_vdofs, trial_vdofs, elemmat, skip_zeros);
             }
          }
@@ -2370,6 +2353,31 @@ void MixedBilinearForm::Update()
    height = test_fes->GetVSize();
    width = trial_fes->GetVSize();
    if (ext) { ext->Update(); }
+
+   for (int k = 0; k < domain_integs.Size(); ++k)
+   {
+      domain_integs[k]->Update();
+   }
+   for (int k = 0; k < boundary_integs.Size(); ++k)
+   {
+      boundary_integs[k]->Update();
+   }
+   for (int k = 0; k < interior_face_integs.Size(); ++k)
+   {
+      interior_face_integs[k]->Update();
+   }
+   for (int k = 0; k < boundary_integs.Size(); ++k)
+   {
+      boundary_face_integs[k]->Update();
+   }
+   for (int k = 0; k < trace_face_integs.Size(); ++k)
+   {
+      trace_face_integs[k]->Update();
+   }
+   for (int k = 0; k < boundary_trace_face_integs.Size(); ++k)
+   {
+      boundary_trace_face_integs[k]->Update();
+   }
 }
 
 MixedBilinearForm::~MixedBilinearForm()

fem/bilininteg.cpp

@@ -21,6 +21,11 @@ using namespace std;
 namespace mfem
 {
 
+void BilinearFormIntegrator::Update()
+{
+   // default no-op
+}
+
 void BilinearFormIntegrator::AssemblePA(const FiniteElementSpace&)
 {
    MFEM_ABORT("BilinearFormIntegrator::AssemblePA(fes)\n"
@@ -3066,6 +3071,7 @@ void VectorDiffusionIntegrator::AssembleElementMatrix(
 
    for (int i = 0; i < ir -> GetNPoints(); i++)
    {
+
       const IntegrationPoint &ip = ir->IntPoint(i);
       el.CalcDShape(ip, dshape);
 
@@ -3459,6 +3465,12 @@ real_t ElasticityIntegrator::ComputeFluxEnergy(const FiniteElement &fluxelem,
    return energy;
 }
 
+void DGTraceIntegrator::Update()
+{
+   qspace[0].reset();
+   qspace[1].reset();
+}
+
 void DGTraceIntegrator::AssembleFaceMatrix(const FiniteElement &el1,
                                            const FiniteElement &el2,
                                            FaceElementTransformations &Trans,

fem/bilininteg.hpp

@@ -46,6 +46,10 @@ public:
    // make sense for the action of the nonlinear operator (but they all make
    // sense for its Jacobian).
 
+   /// Signal this integrator that something about either the trial or test space has changed.
+   virtual void Update();
+
+
    /// Method defining partial assembly.
    /** The result of the partial assembly is stored internally so that it can be
        used later in the methods AddMultPA() and AddMultTransposePA(). */
@@ -2496,7 +2500,8 @@ private:
 #endif
 
 public:
-   ConvectionIntegrator(VectorCoefficient &q, real_t a = 1.0);
+   ConvectionIntegrator(VectorCoefficient &q, real_t a = 1.0)
+      : Q(&q) { alpha = a; }
 
    void AssembleElementMatrix(const FiniteElement &,
                               ElementTransformation &,
@@ -2529,28 +2534,6 @@ public:
 
    bool SupportsCeed() const override { return DeviceCanUseCeed(); }
 
-   /// arguments: NE, B, G, Bt, Gt, pa_data, x, y, D1D, Q1D
-   using ApplyKernelType = void (*)(const int, const Array<real_t> &,
-                                    const Array<real_t> &,
-                                    const Array<real_t> &,
-                                    const Array<real_t> &, const Vector &,
-                                    const Vector &, Vector &, const int,
-                                    const int);
-
-   /// arguments: DIMS, D1D, Q1D
-   MFEM_REGISTER_KERNELS(ApplyPAKernels, ApplyKernelType, (int, int, int));
-   /// arguments: DIMS, D1D, Q1D
-   MFEM_REGISTER_KERNELS(ApplyPATKernels, ApplyKernelType, (int, int, int));
-
-   template <int DIM, int D1D, int Q1D>
-   static void AddSpecialization()
-   {
-      ApplyPAKernels::Specialization<DIM, D1D, Q1D>::Add();
-      ApplyPATKernels::Specialization<DIM, D1D, Q1D>::Add();
-   }
-
-   struct Kernels { Kernels(); };
-
 protected:
    const IntegrationRule* GetDefaultIntegrationRule(
       const FiniteElement& trial_fe,
@@ -2596,40 +2579,41 @@ public:
     by scalar FE through standard transformation. */
 class VectorMassIntegrator: public BilinearFormIntegrator
 {
-   int vdim = -1, Q_order = 0;
+private:
+   int vdim;
    Vector shape, te_shape, vec;
    DenseMatrix partelmat;
    DenseMatrix mcoeff;
+   int Q_order;
 
 protected:
-   Coefficient *Q = nullptr;
-   VectorCoefficient *VQ = nullptr;
-   MatrixCoefficient *MQ = nullptr;
+   Coefficient *Q;
+   VectorCoefficient *VQ;
+   MatrixCoefficient *MQ;
    // PA extension
+   Vector pa_data;
    const DofToQuad *maps;         ///< Not owned
    const GeometricFactors *geom;  ///< Not owned
-   int ne, dim, dofs1D, quad1D, coeff_vdim;
-   Vector pa_data;
+   int dim, ne, nq, dofs1D, quad1D;
 
 public:
    /// Construct an integrator with coefficient 1.0
-   VectorMassIntegrator() = default;
-
+   VectorMassIntegrator()
+      : vdim(-1), Q_order(0), Q(NULL), VQ(NULL), MQ(NULL) { }
    /** Construct an integrator with scalar coefficient q.  If possible, save
        memory by using a scalar integrator since the resulting matrix is block
        diagonal with the same diagonal block repeated. */
-   VectorMassIntegrator(Coefficient &q, int qo = 0): Q_order(qo), Q(&q) { }
-
-   VectorMassIntegrator(Coefficient &q, const IntegrationRule *ir):
-      BilinearFormIntegrator(ir), Q(&q) { }
-
+   VectorMassIntegrator(Coefficient &q, int qo = 0)
+      : vdim(-1), Q_order(qo), Q(&q), VQ(NULL), MQ(NULL) { }
+   VectorMassIntegrator(Coefficient &q, const IntegrationRule *ir)
+      : BilinearFormIntegrator(ir), vdim(-1), Q_order(0), Q(&q), VQ(NULL),
+        MQ(NULL) { }
    /// Construct an integrator with diagonal coefficient q
-   VectorMassIntegrator(VectorCoefficient &q, int qo = 0):
-      vdim(q.GetVDim()), Q_order(qo), VQ(&q) { }
-
+   VectorMassIntegrator(VectorCoefficient &q, int qo = 0)
+      : vdim(q.GetVDim()), Q_order(qo), Q(NULL), VQ(&q), MQ(NULL) { }
    /// Construct an integrator with matrix coefficient q
-   VectorMassIntegrator(MatrixCoefficient &q, int qo = 0):
-      vdim(q.GetVDim()), Q_order(qo), MQ(&q) { }
+   VectorMassIntegrator(MatrixCoefficient &q, int qo = 0)
+      : vdim(q.GetVDim()), Q_order(qo), Q(NULL), VQ(NULL), MQ(&q) { }
 
    int GetVDim() const { return vdim; }
    void SetVDim(int vdim_) { vdim = vdim_; }
@@ -2641,7 +2625,6 @@ public:
                                const FiniteElement &test_fe,
                                ElementTransformation &Trans,
                                DenseMatrix &elmat) override;
-
    using BilinearFormIntegrator::AssemblePA;
    void AssemblePA(const FiniteElementSpace &fes) override;
    void AssembleMF(const FiniteElementSpace &fes) override;
@@ -2650,15 +2633,6 @@ public:
    void AddMultPA(const Vector &x, Vector &y) const override;
    void AddMultMF(const Vector &x, Vector &y) const override;
    bool SupportsCeed() const override { return DeviceCanUseCeed(); }
-
-   using VectorMassAddMultPAType =
-      void(*)(const int,  const int,
-              const Array<real_t>&, const Vector&,
-              const Vector&, Vector&, const int, const int);
-
-   MFEM_REGISTER_KERNELS(VectorMassAddMultPA,
-                         VectorMassAddMultPAType,
-                         (int, int, int));
 };
 
 
@@ -2710,7 +2684,7 @@ public:
 
 
 /** Integrator for $(-Q u, \nabla v)$ for Nedelec ($u$) and $H^1$ ($v$) elements.
-    This is equivalent to a weak divergence of the $H(curl)$ basis functions. */
+    This is equivalent to a weak divergence of the $H(curl$ basis functions. */
 class VectorFEWeakDivergenceIntegrator: public BilinearFormIntegrator
 {
 protected:
@@ -2830,13 +2804,15 @@ protected:
    bool symmetric = true; ///< False if using a nonsymmetric matrix coefficient
 
 public:
-   CurlCurlIntegrator();
+   CurlCurlIntegrator() { Q = NULL; DQ = NULL; MQ = NULL; }
    /// Construct a bilinear form integrator for Nedelec elements
-   CurlCurlIntegrator(Coefficient &q, const IntegrationRule *ir = nullptr);
+   CurlCurlIntegrator(Coefficient &q, const IntegrationRule *ir = NULL) :
+      BilinearFormIntegrator(ir), Q(&q), DQ(NULL), MQ(NULL) { }
    CurlCurlIntegrator(DiagonalMatrixCoefficient &dq,
-                      const IntegrationRule *ir = nullptr);
-   CurlCurlIntegrator(MatrixCoefficient &mq,
-                      const IntegrationRule *ir = nullptr);
+                      const IntegrationRule *ir = NULL) :
+      BilinearFormIntegrator(ir), Q(NULL), DQ(&dq), MQ(NULL) { }
+   CurlCurlIntegrator(MatrixCoefficient &mq, const IntegrationRule *ir = NULL) :
+      BilinearFormIntegrator(ir), Q(NULL), DQ(NULL), MQ(&mq) { }
 
    /* Given a particular Finite Element, compute the
       element curl-curl matrix elmat */
@@ -2866,34 +2842,6 @@ public:
    void AssembleDiagonalPA(Vector& diag) override;
 
    const Coefficient *GetCoefficient() const { return Q; }
-
-   /// arguments: d1d, q1d, symmetric, NE, bo, bc, bot, bct, gc, gct, pa_data,
-   /// x, y, useAbs
-   using ApplyKernelType = void (*)(
-                              const int, const int, const bool, const int, const Array<real_t> &,
-                              const Array<real_t> &, const Array<real_t> &, const Array<real_t> &,
-                              const Array<real_t> &, const Array<real_t> &, const Vector &,
-                              const Vector &, Vector &, const bool);
-
-   /// arguments: d1d, q1d, symmetric, ne, Bo, Bc, Go, Gc, pa_data, diag
-   using DiagonalKernelType = void (*)(const int, const int, const bool,
-                                       const int, const Array<real_t> &,
-                                       const Array<real_t> &,
-                                       const Array<real_t> &,
-                                       const Array<real_t> &, const Vector &,
-                                       Vector &);
-
-   /// parameters: dim, d1d, q1d
-   MFEM_REGISTER_KERNELS(ApplyPAKernels, ApplyKernelType, (int, int, int));
-   /// parameters: dim, d1d, q1d
-   MFEM_REGISTER_KERNELS(DiagonalPAKernels, DiagonalKernelType, (int, int, int));
-   struct Kernels { Kernels(); };
-
-   template <int DIM, int D1D, int Q1D> static void AddSpecialization()
-   {
-      ApplyPAKernels::Specialization<DIM, D1D, Q1D>::Add();
-      DiagonalPAKernels::Specialization<DIM, D1D, Q1D>::Add();
-   }
 };
 
 /** Integrator for $(\mathrm{curl}(u), \mathrm{curl}(v))$ for FE spaces defined by 'dim' copies of a
@@ -3129,34 +3077,39 @@ public:
     to be the spatial dimension (i.e. 2-dimension or 3-dimension). */
 class VectorDiffusionIntegrator : public BilinearFormIntegrator
 {
-   int vdim = -1;
-   DenseMatrix dshape, dshapedxt, pelmat;
-   DenseMatrix mcoeff;
-   Vector vcoeff;
-
 protected:
-   Coefficient *Q = nullptr;
-   VectorCoefficient *VQ = nullptr;
-   MatrixCoefficient *MQ = nullptr;
+   Coefficient *Q = NULL;
+   VectorCoefficient *VQ = NULL;
+   MatrixCoefficient *MQ = NULL;
+
    // PA extension
    const DofToQuad *maps;         ///< Not owned
    const GeometricFactors *geom;  ///< Not owned
-   int ne, dim, sdim, dofs1D, quad1D, coeff_vdim;
+   int dim, sdim, ne, dofs1D, quad1D;
    Vector pa_data;
 
+private:
+   DenseMatrix dshape, dshapedxt, pelmat;
+   int vdim = -1;
+   DenseMatrix mcoeff;
+   Vector vcoeff;
+
 public:
-   VectorDiffusionIntegrator(const IntegrationRule *ir = nullptr);
+   VectorDiffusionIntegrator() { }
 
    /** \brief Integrator with unit coefficient for caller-specified vector
        dimension.
 
        If the vector dimension does not match the true dimension of the space,
        the resulting element matrix will be mathematically invalid. */
-   VectorDiffusionIntegrator(int vector_dimension);
+   VectorDiffusionIntegrator(int vector_dimension)
+      : vdim(vector_dimension) { }
 
-   VectorDiffusionIntegrator(Coefficient &q);
+   VectorDiffusionIntegrator(Coefficient &q)
+      : Q(&q) { }
 
-   VectorDiffusionIntegrator(Coefficient &q, const IntegrationRule *ir);
+   VectorDiffusionIntegrator(Coefficient &q, const IntegrationRule *ir)
+      : BilinearFormIntegrator(ir), Q(&q) { }
 
    /** \brief Integrator with scalar coefficient for caller-specified vector
        dimension.
@@ -3166,7 +3119,8 @@ public:
 
        If the vector dimension does not match the true dimension of the space,
        the resulting element matrix will be mathematically invalid. */
-   VectorDiffusionIntegrator(Coefficient &q, int vector_dimension);
+   VectorDiffusionIntegrator(Coefficient &q, int vector_dimension)
+      : Q(&q), vdim(vector_dimension) { }
 
    /** \brief Integrator with \c VectorCoefficient. The vector dimension of the
        \c FiniteElementSpace is assumed to be the same as the dimension of the
@@ -3177,7 +3131,8 @@ public:
 
        If the vector dimension does not match the true dimension of the space,
        the resulting element matrix will be mathematically invalid. */
-   VectorDiffusionIntegrator(VectorCoefficient &vq);
+   VectorDiffusionIntegrator(VectorCoefficient &vq)
+      : VQ(&vq), vdim(vq.GetVDim()) { }
 
    /** \brief Integrator with \c MatrixCoefficient. The vector dimension of the
        \c FiniteElementSpace is assumed to be the same as the dimension of the
@@ -3188,7 +3143,8 @@ public:
 
        If the vector dimension does not match the true dimension of the space,
        the resulting element matrix will be mathematically invalid. */
-   VectorDiffusionIntegrator(MatrixCoefficient& mq);
+   VectorDiffusionIntegrator(MatrixCoefficient& mq)
+      : MQ(&mq), vdim(mq.GetVDim()) { }
 
    void AssembleElementMatrix(const FiniteElement &el,
                               ElementTransformation &Trans,
@@ -3196,7 +3152,6 @@ public:
    void AssembleElementVector(const FiniteElement &el,
                               ElementTransformation &Tr,
                               const Vector &elfun, Vector &elvect) override;
-
    using BilinearFormIntegrator::AssemblePA;
    void AssemblePA(const FiniteElementSpace &fes) override;
    void AssembleMF(const FiniteElementSpace &fes) override;
@@ -3205,23 +3160,6 @@ public:
    void AddMultPA(const Vector &x, Vector &y) const override;
    void AddMultMF(const Vector &x, Vector &y) const override;
    bool SupportsCeed() const override { return DeviceCanUseCeed(); }
-
-   /// arguments: ne, coeff_vdim, B, G, pa_data, x, y, d1d, q1d, vdim
-   using ApplyKernelType = void (*)(const int, const int,
-                                    const Array<real_t> &, const Array<real_t> &,
-                                    const Vector &, const Vector &, Vector &,
-                                    const int, const int, const int);
-
-   /// arguments: dim, vdim, d1d, q1d
-   MFEM_REGISTER_KERNELS(ApplyPAKernels, ApplyKernelType, (int, int, int, int));
-
-   template <int DIM, int VDIM, int D1D, int Q1D>
-   static void AddSpecialization()
-   {
-      ApplyPAKernels::Specialization<DIM, VDIM, D1D, Q1D>::Add();
-   }
-
-   // struct Kernels { Kernels(); };
 };
 
 /** Integrator for the linear elasticity form:
@@ -3375,10 +3313,11 @@ public:
 class DGTraceIntegrator : public BilinearFormIntegrator
 {
 protected:
-   Coefficient *rho = nullptr;
-   VectorCoefficient *u = nullptr;
+   Coefficient *rho;
+   VectorCoefficient *u;
    real_t alpha, beta;
    // PA extension
+   std::unique_ptr<FaceQuadratureSpace> qspace[2];
    Vector pa_data;
    const DofToQuad *maps;             ///< Not owned
    const FaceGeometricFactors *geom;  ///< Not owned
@@ -3389,16 +3328,19 @@ private:
    Vector tr_shape1, te_shape1, tr_shape2, te_shape2;
 
 public:
-   DGTraceIntegrator(real_t a, real_t b);
-
    /// Construct integrator with $\rho = 1$, $\beta = \alpha/2$.
-   DGTraceIntegrator(VectorCoefficient &u_, real_t a);
+   DGTraceIntegrator(VectorCoefficient &u_, real_t a)
+   { rho = NULL; u = &u_; alpha = a; beta = 0.5*a; }
 
    /// Construct integrator with $\rho = 1$.
-   DGTraceIntegrator(VectorCoefficient &u_, real_t a, real_t b);
+   DGTraceIntegrator(VectorCoefficient &u_, real_t a, real_t b)
+   { rho = NULL; u = &u_; alpha = a; beta = b; }
 
    DGTraceIntegrator(Coefficient &rho_, VectorCoefficient &u_,
-                     real_t a, real_t b);
+                     real_t a, real_t b)
+   { rho = &rho_; u = &u_; alpha = a; beta = b; }
+
+   void Update() override;
 
    using BilinearFormIntegrator::AssembleFaceMatrix;
    void AssembleFaceMatrix(const FiniteElement &el1,
@@ -3437,26 +3379,6 @@ public:
    static const IntegrationRule &GetRule(Geometry::Type geom, int order,
                                          const ElementTransformation &T);
 
-   /// arguments: nf, B, Bt, pa_data, x, y, dofs1D, quad1D
-   using ApplyKernelType = void (*)(const int, const Array<real_t> &,
-                                    const Array<real_t> &, const Vector &,
-                                    const Vector &, Vector &, const int,
-                                    const int);
-
-   /// arguments: DIM, d1d, q1d
-   MFEM_REGISTER_KERNELS(ApplyPAKernels, ApplyKernelType, (int, int, int));
-   /// arguments: DIM, d1d, q1d
-   MFEM_REGISTER_KERNELS(ApplyPATKernels, ApplyKernelType, (int, int, int));
-
-   template <int DIM, int D1D, int Q1D> static void AddSpecialization()
-   {
-      ApplyPAKernels::Specialization<DIM, D1D, Q1D>::Add();
-      ApplyPATKernels::Specialization<DIM, D1D, Q1D>::Add();
-   }
-
-   struct Kernels { Kernels(); };
-
-
 private:
    void SetupPA(const FiniteElementSpace &fes, FaceType type);
 };
@@ -3503,8 +3425,8 @@ public:
 class DGDiffusionIntegrator : public BilinearFormIntegrator
 {
 protected:
-   Coefficient *Q = nullptr;
-   MatrixCoefficient *MQ = nullptr;
+   Coefficient *Q;
+   MatrixCoefficient *MQ;
    real_t sigma, kappa;
 
    // these are not thread-safe!
@@ -3519,11 +3441,15 @@ protected:
    IntegrationRules irs{0, Quadrature1D::GaussLobatto};
 
 public:
-   DGDiffusionIntegrator(const real_t s, const real_t k);
-   DGDiffusionIntegrator(Coefficient &q, const real_t s, const real_t k);
-   DGDiffusionIntegrator(MatrixCoefficient &q, const real_t s, const real_t k);
+   DGDiffusionIntegrator(const real_t s, const real_t k)
+      : Q(NULL), MQ(NULL), sigma(s), kappa(k) { }
+   DGDiffusionIntegrator(Coefficient &q, const real_t s, const real_t k)
+      : Q(&q), MQ(NULL), sigma(s), kappa(k) { }
+   DGDiffusionIntegrator(MatrixCoefficient &q, const real_t s, const real_t k)
+      : Q(NULL), MQ(&q), sigma(s), kappa(k) { }
    using BilinearFormIntegrator::AssembleFaceMatrix;
-   void AssembleFaceMatrix(const FiniteElement &el1, const FiniteElement &el2,
+   void AssembleFaceMatrix(const FiniteElement &el1,
+                           const FiniteElement &el2,
                            FaceElementTransformations &Trans,
                            DenseMatrix &elmat) override;
 
@@ -3542,28 +3468,6 @@ public:
 
    const IntegrationRule &GetRule(int order, Geometry::Type geom);
 
-   real_t GetPenaltyParameter() const { return kappa; }
-
-   /// arguments: nf, B, Bt, G, Gt, sigma, pa_data, x, dxdn, y, dydn, dofs1D,
-   /// quad1D
-   using ApplyKernelType = void (*)(const int, const Array<real_t> &,
-                                    const Array<real_t> &,
-                                    const Array<real_t> &,
-                                    const Array<real_t> &, const real_t,
-                                    const Vector &, const Vector &_,
-                                    const Vector &, Vector &, Vector &,
-                                    const int, const int);
-
-   /// arguments: DIM, d1d, q1d
-   MFEM_REGISTER_KERNELS(ApplyPAKernels, ApplyKernelType, (int, int, int));
-
-   template <int DIM, int D1D, int Q1D> static void AddSpecialization()
-   {
-      ApplyPAKernels::Specialization<DIM, D1D, Q1D>::Add();
-   }
-
-   struct Kernels { Kernels(); };
-
 private:
    void SetupPA(const FiniteElementSpace &fes, FaceType type);
 };

fem/bounds.cpp

@@ -39,8 +39,8 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
    b_type = b_type_i;
    cp_type = cp_type_i;
    tol = tol_i;
-   lbound.SetSize(ncp, nb);
-   ubound.SetSize(ncp, nb);
+   lbound.SetSize(nb, ncp);
+   ubound.SetSize(nb, ncp);
    nodes.SetSize(nb);
    weights.SetSize(nb);
    control_points.SetSize(ncp);
@@ -125,25 +125,21 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
       {
          if (j == 0)
          {
-            lbound(j,i) = bv(i);
-            ubound(j,i) = bv(i);
+            lbound(i, j) = bv(i);
+            ubound(i, j) = bv(i);
          }
          else if (j == ncp-1)
          {
-            lbound(j,i) = bv(i);
-            ubound(j,i) = bv(i);
+            lbound(i, j) = bv(i);
+            ubound(i, j) = bv(i);
          }
          else
          {
             vals(0)  = bv(i);
             vals(1) =  bmv(i) +  dm*bdmv(i);
             vals(2) =  bpv(i) +  dp*bdpv(i);
-            lbound(j,i) = vals.Min()-tol; // tolerance for good measure
-            ubound(j,i) = vals.Max()+tol; // tolerance for good measure
-            if (b_type == 2)
-            {
-               lbound(j,i) = std::max(lbound(j,i),0_r);
-            }
+            lbound(i, j) = vals.Min()-tol; // tolerance for good measure
+            ubound(i, j) = vals.Max()+tol; // tolerance for good measure
          }
       }
    }
@@ -211,8 +207,7 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
    }
 }
 
-PLBound::PLBound(const FiniteElementSpace *fes, const int ncp_i,
-                 const int cp_type_i)
+PLBound::PLBound(FiniteElementSpace *fes, int ncp_i, int cp_type_i)
 {
    MFEM_VERIFY(!fes->IsVariableOrder(),
                "Variable order meshes not yet supported.");
@@ -269,15 +264,15 @@ PLBound::PLBound(const FiniteElementSpace *fes, const int ncp_i,
    Setup(nb, ncp, b_type, cp_type, tol);
 }
 
-void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
-                          Vector &intmax) const
+void PLBound::Get1DBounds(Vector &coeff, Vector &intmin, Vector &intmax) const
 {
    real_t x,w;
    intmin.SetSize(ncp);
    intmax.SetSize(ncp);
    intmin = 0.0;
    intmax = 0.0;
-   Vector coeffm;
+   Vector coeffm(nb);
+   coeffm = 0.0;
 
    real_t a0 = 0.0;
    real_t a1 = 0.0;
@@ -305,8 +300,6 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
    // compute L2 projection for linear bases: a0 + a1*x
    if (proj)
    {
-      coeffm.SetSize(nb);
-      coeffm = 0.0;
       for (int i = 0; i < nb; i++)
       {
          x = 2.0*nodes_int(i)-1;
@@ -347,14 +340,13 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
       real_t c = coeffm(i);
       for (int j = 0; j < ncp; j++)
       {
-         intmin(j) += min(lbound(j,i)*c, ubound(j,i)*c);
-         intmax(j) += max(lbound(j,i)*c, ubound(j,i)*c);
+         intmin(j) += min(lbound(i,j)*c, ubound(i,j)*c);
+         intmax(j) += max(lbound(i,j)*c, ubound(i,j)*c);
       }
    }
 }
 
-void PLBound::Get2DBounds(const Vector &coeff, Vector &intmin,
-                          Vector &intmax) const
+void PLBound::Get2DBounds(Vector &coeff, Vector &intmin, Vector &intmax) const
 {
    intmin.SetSize(ncp*ncp);
    intmax.SetSize(ncp*ncp);
@@ -479,10 +471,10 @@ void PLBound::Get2DBounds(const Vector &coeff, Vector &intmin,
          real_t w1 = intmaxT(id2++);
          for (int k = 0; k < ncp; k++) // kth row
          {
-            vals(0) = w0*lbound(k,j);
-            vals(1) = w0*ubound(k,j);
-            vals(2) = w1*lbound(k,j);
-            vals(3) = w1*ubound(k,j);
+            vals(0) = w0*lbound(j,k);
+            vals(1) = w0*ubound(j,k);
+            vals(2) = w1*lbound(j,k);
+            vals(3) = w1*ubound(j,k);
             intmin(k*ncp+i) += vals.Min();
             intmax(k*ncp+i) += vals.Max();
          }
@@ -490,8 +482,7 @@ void PLBound::Get2DBounds(const Vector &coeff, Vector &intmin,
    }
 }
 
-void PLBound::Get3DBounds(const Vector &coeff, Vector &intmin,
-                          Vector &intmax) const
+void PLBound::Get3DBounds(Vector &coeff, Vector &intmin, Vector &intmax) const
 {
    int nb2 = nb*nb,
        ncp2 = ncp*ncp,
@@ -558,17 +549,17 @@ void PLBound::Get3DBounds(const Vector &coeff, Vector &intmin,
             for (int i = 0; i < nb; i++)
             {
                x = 2.0*nodes(i)-1; // x-coordinate
-               minNodalVals(i) -= a0V(j) + a1V(j)*x;
-               maxNodalVals(i) -= a0V(j) + a1V(j)*x;
+               minBounds(i) -= a0V(j) + a1V(j)*x;
+               maxBounds(i) -= a0V(j) + a1V(j)*x;
             }
             // Compute Bernstein coefficients
             LUFactors lu(basisMatLU.GetData(), lu_ip.GetData());
-            lu.Solve(nb, 1, minNodalVals.GetData());
-            lu.Solve(nb, 1, maxNodalVals.GetData());
+            lu.Solve(nb, 1, minBounds.GetData());
+            lu.Solve(nb, 1, maxBounds.GetData());
             for (int i = 0; i < nb; i++)
             {
-               intminT(i*ncp2+j) = minNodalVals(i);
-               intmaxT(i*ncp2+j) = maxNodalVals(i);
+               intminT(i*ncp2+j) = minBounds(i);
+               intmaxT(i*ncp2+j) = maxBounds(i);
             }
          }
       }
@@ -622,10 +613,10 @@ void PLBound::Get3DBounds(const Vector &coeff, Vector &intmin,
          real_t w1 = intmaxT(id2++);
          for (int k = 0; k < ncp; k++) // kth slice
          {
-            vals(0) = w0*lbound(k,j);
-            vals(1) = w0*ubound(k,j);
-            vals(2) = w1*lbound(k,j);
-            vals(3) = w1*ubound(k,j);
+            vals(0) = w0*lbound(j,k);
+            vals(1) = w0*ubound(j,k);
+            vals(2) = w1*lbound(j,k);
+            vals(3) = w1*ubound(j,k);
             intmin(k*ncp2+i) += vals.Min();
             intmax(k*ncp2+i) += vals.Max();
          }
@@ -633,7 +624,7 @@ void PLBound::Get3DBounds(const Vector &coeff, Vector &intmin,
    }
 }
 
-void PLBound::GetNDBounds(const int rdim, const Vector &coeff,
+void PLBound::GetNDBounds(int rdim, Vector &coeff,
                           Vector &intmin, Vector &intmax) const
 {
    if (rdim == 1)
@@ -658,8 +649,7 @@ void PLBound::SetupBernsteinBasisMat(DenseMatrix &basisMat,
                                      Vector &nodesBern) const
 {
    const int nbern = nodesBern.Size();
-   L2_SegmentElement el(nbern-1, 2);
-   // we use L2 to leverage lexicographic order
+   L2_SegmentElement el(nbern-1, 2); // we use L2 to leverage lexicographic order
    Array<int> ordering = el.GetLexicographicOrdering();
    basisMat.SetSize(nbern, nbern);
    Vector shape(nbern);
@@ -672,39 +662,6 @@ void PLBound::SetupBernsteinBasisMat(DenseMatrix &basisMat,
    }
 }
 
-DenseMatrix PLBound::GetBoundingMatrix(int dim, bool is_lower) const
-{
-   if (dim > 1)
-   {
-      const int ncpd = static_cast<int>(std::pow(ncp, dim));
-      const int nbd = static_cast<int>(std::pow(nb, dim));
-      DenseMatrix boundND(ncpd, nbd);
-      Vector phimin, phimax, col;
-      Vector coeffs(nbd);
-      coeffs = 0.0;
-      for (int j = 0; j < nbd; j++)
-      {
-         coeffs(j) = 1.0;
-         boundND.GetColumnReference(j, col);
-         GetNDBounds(dim, coeffs, phimin, phimax);
-         col = is_lower ? phimin : phimax;
-         coeffs(j) = 0.0;
-      }
-      return boundND;
-   }
-   return is_lower ? lbound : ubound;
-}
-
-DenseMatrix PLBound::GetLowerBoundMatrix(int dim) const
-{
-   return GetBoundingMatrix(dim, true);
-}
-
-DenseMatrix PLBound::GetUpperBoundMatrix(int dim) const
-{
-   return GetBoundingMatrix(dim, false);
-}
-
 constexpr int PLBound::min_ncp_gl_x[2][11];
 constexpr int PLBound::min_ncp_gll_x[2][11];
 constexpr int PLBound::min_ncp_pos_x[2][11];
@@ -755,4 +712,4 @@ void PLBound::Print(std::ostream &outp) const
    ubound.Print(outp);
 }
 
-}
+}

fem/bounds.hpp

@@ -9,8 +9,8 @@
 // terms of the BSD-3 license. We welcome feedback and contributions, see file
 // CONTRIBUTING.md for details.
 
-#ifndef MFEM_BOUNDS
-#define MFEM_BOUNDS
+#ifndef MFEM_BOUND
+#define MFEM_BOUND
 
 #include "../config/config.hpp"
 #include "fespace.hpp"
@@ -19,18 +19,14 @@ namespace mfem
 {
 
 /** @name Piecewise linear bounds of bases
-    \brief Piecewise linear bounds of bases can be used to compute bounds on
-    the grid function in each element. The bounds for the bases are constructed
-    based on the following parameters:
+    \brief Piecewise linear bounds of bases can be used to compute bounds on the grid function in each element. The bounds for the bases are constructed based on the following parameters:
 
     (i) @b nb: number of bases/nodes in 1D (i.e. polynomial order+1),
 
-    (ii) @b b_type: bases type, 0 - Lagrange interpolants on Gauss-Legendre
-    nodes, 1 - Lagrange interpolants on Gauss-Lobatto-Legendre nodes, and
+    (ii) @b b_type: bases type, 0 - Lagrange interpolants on Gauss-Legendre nodes, 1 - Lagrange interpolants on Gauss-Lobatto-Legendre nodes, and
     2 - Positive/Bernstein bases on uniformly distributed nodes,
 
-    (iii) @b ncp: number of control points used to construct the piecewise
-    linear bounds
+    (iii) @b ncp: number of control points used to construct the piecewise linear bounds
 
     (iv) @b cp_type: control point distribution. 0 - GL + end-points,
                     1 - Chebyshev.
@@ -39,9 +35,7 @@ namespace mfem
 
     If the user does not specify @b ncp and @b cp_type, the minimum value of
     @b ncp is used that would bound the bases for the @b cp_type. We default
-    to @b cp_type = 0 as it requires fewer number of points to bound the bases.
-    Typically, @b ncp = 2 @b nb is sufficient to get fairly compact bounds, and
-    increasing @b ncp results in tighter bounds.
+    to @b cp_type = 0 as it requires fewer number of points to bound the bases. Typically, @b ncp = 2 @b nb is sufficient to get fairly compact bounds, and increasing @b ncp results in tighter bounds.
 
     Finally, only tensor-product elements are currently supported.
 
@@ -60,7 +54,7 @@ private:
    bool proj = true; // Use linear projection to compute bounds.
    real_t tol = 0.0; // offset bounds to avoid round-off errors
    Vector nodes, weights, control_points;
-   DenseMatrix lbound, ubound; // ncp x nb matrices with bounds of all bases
+   DenseMatrix lbound, ubound; // nb x ncp matrices with bounds of all bases
    // Some auxillary storage for computing the bounds with Bernstein
    DenseMatrix basisMatNodes; // Bernstein bases at equispaced nodes
    DenseMatrix basisMatInt;   // Bernstein bases at GLL nodes
@@ -86,9 +80,6 @@ private:
       {3,5,8,9,11,12,13,13,14,15,16}
    };
 
-   /// Helper function to extract lower or upper bounding matrix
-   DenseMatrix GetBoundingMatrix(int dim, bool is_lower) const;
-
 public:
    // Constructor
    PLBound(const int nb_i, const int ncp_i, const int b_type_i,
@@ -98,85 +89,42 @@ public:
    }
 
    // Constructor
-   PLBound(const FiniteElementSpace *fes,
-           const int ncp_i = -1, const int cp_type_i = 0);
+   PLBound(FiniteElementSpace *fes, int ncp_i = -1, int cp_type_i = 0);
 
-   /// Get minimum number of control points needed to bound the given bases
+   // Get minimum number of control points needed to bound the given bases
    int GetMinimumPointsForGivenBases(int nb_i, int b_type_i,
                                      int cp_type_i) const;
 
-   /// Print information about the bounds
+   // Print information about the bounds
    void Print(std::ostream &outp = mfem::out) const;
 
-   /** @brief Enable (default) or disable linear projection before bounding.
-    *
-    *  @details This projection increases the computational cost but results in
-    *  tighter bounds.
-    */
+   // Enable (default) or disable linear projection before bounding.
+   // This projection increases the computational cost but results in tighter
+   // bounds.
    void SetProjectionFlagForBounding(bool proj_) { proj = proj_; }
 
-   /** @brief Compute piecewise linear bounds for the lexicographically-ordered
-    *  nodal coefficients in @a coeff in 1D/2D/3D.
-    *
-    *  @param[in] rdim    The spatial dimension of the element (1, 2, or 3).
-    *  @param[in] coeff   The vector of lexicographically-ordered coefficients.
-    *                     Should be of size nb^rdim, where nb is the number of
-    *                     bases/nodes in 1D. These coefficients must correspond
-    *                     to the bases type and number of bases, used in the
-    *                     constructor of PLBound.
-    *
-    *  @param[out] intmin The vector of minimum bound for all control points.
-    *  @param[out] intmax The vector of maximum bound for all control points.
-    *                     Both intmin and intmax are of size ncp^rdim, where
-    *                     ncp is the number of control points in 1D, and are
-    *                     ordered lexicographically.
-    */
-   void GetNDBounds(const int rdim, const Vector &coeff,
+   /// Compute piecewise linear bounds for the lexicographically-ordered
+   /// coefficients in @a coeff in 1D/2D/3D.
+   void GetNDBounds(int rdim, Vector &coeff,
                     Vector &intmin, Vector &intmax) const;
 
    /// Get number of control points used to compute the bounds.
    int GetNControlPoints() const { return ncp; }
-
-   /// Get 1D control point locations (lexicographic order) in [0,1].
-   const Vector &GetControlPoints() const { return control_points; }
-
-   /** @brief Get lower and upper bounding matrix (ncp^dim x nb^dim)
-    *
-    *  @details The matrices can be used to compute the bounds at control points
-    *           by a simple matrix-vector product with the
-    *           lexicographically-ordered nodal coefficients.
-    *           The resulting output is also lexicographically-ordered.
-    *
-    *  @note These matrices do not account for the linear projection step that
-    *        is optionally done in GetNDBounds before bounding the function.
-    */
-   ///@{
-   DenseMatrix GetLowerBoundMatrix(int dim = 1) const;
-   DenseMatrix GetUpperBoundMatrix(int dim = 1) const;
-   ///@}
-
 private:
-   /** @brief Compute piecewise linear bounds for the lexicographically-ordered
-    *  nodal coefficients in @a coeff in 1D.
-    *  See GetNDBounds for details of the input and output parameters.
-    */
-   void Get1DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
+   /// Compute piecewise linear bounds for the lexicographically-ordered
+   /// coefficients in @a coeff in 1D.
+   void Get1DBounds(Vector &coeff, Vector &intmin, Vector &intmax) const;
 
-   /** @brief Compute piecewise linear bounds for the lexicographically-ordered
-    *  nodal coefficients in @a coeff in 2D.
-    *  See GetNDBounds for details of the input and output parameters.
-    */
-   void Get2DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
+   /// Compute piecewise linear bounds for the lexicographically-ordered
+   /// coefficients in @a coeff in 2D.
+   void Get2DBounds(Vector &coeff, Vector &intmin, Vector &intmax) const;
 
-   /** @brief Compute piecewise linear bounds for the lexicographically-ordered
-    *  nodal coefficients in @a coeff in 3D.
-    *  See GetNDBounds for details of the input and output parameters.
-    */
-   void Get3DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
+   /// Compute piecewise linear bounds for the lexicographically-ordered
+   /// coefficients in @a coeff in 3D.
+   void Get3DBounds(Vector &coeff, Vector &intmin, Vector &intmax) const;
 
-   /** @brief Setup matrix used to compute values at given 1D locations in [0,1]
-    *  for Bernstein bases.
-    */
+   /// Setup matrix used to compute values at given 1D locations in [0,1]
+   /// for Bernstein bases.
    void SetupBernsteinBasisMat(DenseMatrix &basisMat, Vector &nodesBern) const;
 
    void Setup(const int nb_i, const int ncp_i, const int b_type_i,
@@ -185,4 +133,4 @@ private:
 
 } // namespace mfem
 
-#endif // MFEM_BOUNDS
+#endif // MFEM_BOUND

fem/ceed/integrators/convection/convection_qf.h

@@ -8,7 +8,6 @@
 // MFEM is free software; you can redistribute it and/or modify it under the
 // terms of the BSD-3 license. We welcome feedback and contributions, see file
 // CONTRIBUTING.md for details.
-#include <ceed/types.h>
 
 /// A structure used to pass additional data to f_build_conv and f_apply_conv
 struct ConvectionContext {
@@ -92,7 +91,7 @@ CEED_QFUNCTION(f_build_conv_const)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 /// libCEED Q-function for building quadrature data for a convection operator
@@ -168,7 +167,7 @@ CEED_QFUNCTION(f_build_conv_quad)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 /// libCEED Q-function for applying a conv operator
@@ -234,7 +233,7 @@ CEED_QFUNCTION(f_apply_conv)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 /// libCEED Q-function for applying a conv operator
@@ -382,7 +381,7 @@ CEED_QFUNCTION(f_apply_conv_mf_const)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 CEED_QFUNCTION(f_apply_conv_mf_quad)(void *ctx, CeedInt Q,
@@ -526,5 +525,5 @@ CEED_QFUNCTION(f_apply_conv_mf_quad)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }

fem/ceed/integrators/diffusion/diffusion_qf.h

@@ -8,7 +8,7 @@
 // MFEM is free software; you can redistribute it and/or modify it under the
 // terms of the BSD-3 license. We welcome feedback and contributions, see file
 // CONTRIBUTING.md for details.
-#include <ceed/types.h>
+
 
 /// A structure used to pass additional data to f_build_diff and f_apply_diff
 struct DiffusionContext { CeedInt dim, space_dim, vdim; CeedScalar coeff; };
@@ -85,7 +85,7 @@ CEED_QFUNCTION(f_build_diff_const)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 /// libCEED Q-function for building quadrature data for a diffusion operator
@@ -161,7 +161,7 @@ CEED_QFUNCTION(f_build_diff_quad)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 /// libCEED Q-function for applying a diff operator
@@ -241,7 +241,7 @@ CEED_QFUNCTION(f_apply_diff)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 /// libCEED Q-function for applying a diff operator
@@ -394,7 +394,7 @@ CEED_QFUNCTION(f_apply_diff_mf_const)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 CEED_QFUNCTION(f_apply_diff_mf_quad)(void *ctx, CeedInt Q,
@@ -549,5 +549,5 @@ CEED_QFUNCTION(f_apply_diff_mf_quad)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }

fem/ceed/integrators/mass/mass_qf.h

@@ -8,7 +8,7 @@
 // MFEM is free software; you can redistribute it and/or modify it under the
 // terms of the BSD-3 license. We welcome feedback and contributions, see file
 // CONTRIBUTING.md for details.
-#include <ceed/types.h>
+
 
 /// A structure used to pass additional data to f_build_diff and f_apply_diff
 struct MassContext { CeedInt dim, space_dim, vdim; CeedScalar coeff; };
@@ -53,7 +53,7 @@ CEED_QFUNCTION(f_build_mass_const)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 /// libCEED Q-function for building quadrature data for a mass operator with a
@@ -95,7 +95,7 @@ CEED_QFUNCTION(f_build_mass_quad)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 /// libCEED Q-function for applying a mass operator
@@ -135,7 +135,7 @@ CEED_QFUNCTION(f_apply_mass)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 /// libCEED Q-function for applying a diff operator
@@ -199,7 +199,7 @@ CEED_QFUNCTION(f_apply_mass_mf_const)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 CEED_QFUNCTION(f_apply_mass_mf_quad)(void *ctx, CeedInt Q,
@@ -266,5 +266,5 @@ CEED_QFUNCTION(f_apply_mass_mf_quad)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }

fem/ceed/integrators/nlconvection/nlconvection_qf.h

@@ -8,7 +8,6 @@
 // MFEM is free software; you can redistribute it and/or modify it under the
 // terms of the BSD-3 license. We welcome feedback and contributions, see file
 // CONTRIBUTING.md for details.
-#include <ceed/types.h>
 
 /// A structure used to pass additional data to f_build_conv and f_apply_conv
 struct NLConvectionContext { CeedInt dim, space_dim, vdim; CeedScalar coeff; };
@@ -88,7 +87,7 @@ CEED_QFUNCTION(f_build_conv_const)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 /// libCEED Q-function for building quadrature data for a convection operator
@@ -168,7 +167,7 @@ CEED_QFUNCTION(f_build_conv_quad)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 /// libCEED Q-function for applying a conv operator
@@ -248,7 +247,7 @@ CEED_QFUNCTION(f_apply_conv)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 /// libCEED Q-function for applying a conv operator
@@ -363,7 +362,7 @@ CEED_QFUNCTION(f_apply_conv_mf_const)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }
 
 CEED_QFUNCTION(f_apply_conv_mf_quad)(void *ctx, CeedInt Q,
@@ -476,5 +475,5 @@ CEED_QFUNCTION(f_apply_conv_mf_quad)(void *ctx, CeedInt Q,
          }
          break;
    }
-   return CEED_ERROR_SUCCESS;
+   return 0;
 }

fem/ceed/interface/ceed.hpp

@@ -18,21 +18,10 @@
 
 #include <ceed.h>
 
-#if !CEED_VERSION_GE(0, 12, 0)
+#if !CEED_VERSION_GE(0,12,0)
 #error MFEM requires a libCEED version >= 0.12.0
 #endif
 
-#if !CEED_VERSION_GE(0, 13, 0)
-#define CeedOperatorCreateComposite(ceed, op)                                  \
-    CeedCompositeOperatorCreate((ceed), (op))
-#define CeedOperatorCompositeAddSub(op, sub)                                   \
-    CeedCompositeOperatorAddSub((op), (sub))
-#define CeedOperatorCompositeGetNumSub(op, num)                                \
-    CeedCompositeOperatorGetNumSub((op), (num))
-#define CeedOperatorCompositeGetSubList(op, list)                              \
-    CeedCompositeOperatorGetSubList((op), (list))
-#endif
-
 namespace mfem
 {
 

fem/ceed/interface/mixed_integrator.hpp

@@ -83,7 +83,7 @@ public:
       }
 
       // Create composite CeedOperator
-      CeedOperatorCreateComposite(internal::ceed, &oper);
+      CeedCompositeOperatorCreate(internal::ceed, &oper);
 
       // Create each sub-CeedOperator
       sub_ops.reserve(element_indices.size());
@@ -101,7 +101,7 @@ public:
          int nelem = *count[value.first];
          sub_op->Assemble(info, fes, ir, nelem, indices, Q);
          sub_ops.push_back(sub_op);
-         CeedOperatorCompositeAddSub(oper, sub_op->GetCeedOperator());
+         CeedCompositeOperatorAddSub(oper, sub_op->GetCeedOperator());
       }
 
       const int ndofs = fes.GetVDim() * fes.GetNDofs();

fem/ceed/interface/util.cpp

@@ -140,7 +140,11 @@ int CeedOperatorGetActiveField(CeedOperator oper, CeedOperatorField *field)
    CeedOperator *subops;
    if (isComposite)
    {
-      ierr = CeedOperatorCompositeGetSubList(oper, &subops); PCeedChk(ierr);
+#if CEED_VERSION_GE(0, 10, 2)
+      ierr = CeedCompositeOperatorGetSubList(oper, &subops); PCeedChk(ierr);
+#else
+      ierr = CeedOperatorGetSubList(oper, &subops); PCeedChk(ierr);
+#endif
       ierr = CeedOperatorGetQFunction(subops[0], &qf); PCeedChk(ierr);
    }
    else
@@ -167,11 +171,7 @@ int CeedOperatorGetActiveField(CeedOperator oper, CeedOperatorField *field)
    for (int i = 0; i < numinputfields; ++i)
    {
       ierr = CeedOperatorFieldGetVector(inputfields[i], &if_vector); PCeedChk(ierr);
-      bool is_active = if_vector == CEED_VECTOR_ACTIVE;
-#if CEED_VERSION_GE(0, 13, 0)
-      ierr = CeedVectorDestroy(&if_vector); PCeedChk(ierr);
-#endif
-      if (is_active)
+      if (if_vector == CEED_VECTOR_ACTIVE)
       {
          if (found)
          {

fem/ceed/solvers/algebraic.cpp

@@ -228,7 +228,7 @@ void AddToCompositeOperator(BilinearFormIntegrator *integ, CeedOperator op)
 {
    if (integ->SupportsCeed())
    {
-      CeedOperatorCompositeAddSub(op, integ->GetCeedOp().GetCeedOperator());
+      CeedCompositeOperatorAddSub(op, integ->GetCeedOp().GetCeedOperator());
    }
    else
    {
@@ -240,7 +240,7 @@ CeedOperator CreateCeedCompositeOperatorFromBilinearForm(BilinearForm &form)
 {
    int ierr;
    CeedOperator op;
-   ierr = CeedOperatorCreateComposite(internal::ceed, &op); PCeedChk(ierr);
+   ierr = CeedCompositeOperatorCreate(internal::ceed, &op); PCeedChk(ierr);
 
    MFEM_VERIFY(form.GetBBFI()->Size() == 0,
                "Not implemented for this integrator!");
@@ -271,13 +271,18 @@ CeedOperator CoarsenCeedCompositeOperator(
    MFEM_ASSERT(isComposite, "");
 
    CeedOperator op_coarse;
-   ierr = CeedOperatorCreateComposite(internal::ceed,
+   ierr = CeedCompositeOperatorCreate(internal::ceed,
                                       &op_coarse); PCeedChk(ierr);
 
    int nsub;
    CeedOperator *subops;
-   ierr = CeedOperatorCompositeGetNumSub(op, &nsub); PCeedChk(ierr);
-   ierr = CeedOperatorCompositeGetSubList(op, &subops); PCeedChk(ierr);
+#if CEED_VERSION_GE(0, 10, 2)
+   ierr = CeedCompositeOperatorGetNumSub(op, &nsub); PCeedChk(ierr);
+   ierr = CeedCompositeOperatorGetSubList(op, &subops); PCeedChk(ierr);
+#else
+   ierr = CeedOperatorGetNumSub(op, &nsub); PCeedChk(ierr);
+   ierr = CeedOperatorGetSubList(op, &subops); PCeedChk(ierr);
+#endif
    for (int isub=0; isub<nsub; ++isub)
    {
       CeedOperator subop = subops[isub];
@@ -289,7 +294,7 @@ CeedOperator CoarsenCeedCompositeOperator(
       // refcounted by existing objects
       ierr = CeedBasisDestroy(&basis_coarse); PCeedChk(ierr);
       ierr = CeedBasisDestroy(&basis_c2f); PCeedChk(ierr);
-      ierr = CeedOperatorCompositeAddSub(op_coarse, subop_coarse);
+      ierr = CeedCompositeOperatorAddSub(op_coarse, subop_coarse);
       PCeedChk(ierr);
       ierr = CeedOperatorDestroy(&subop_coarse); PCeedChk(ierr);
    }