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@@ -289,10 +289,10 @@ jobs:
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew update
|
||||
brew install llvm@19 enzyme
|
||||
echo "LLVM_PREFIX=$(brew --prefix llvm@19)" >> $GITHUB_ENV
|
||||
echo "OMPI_CC=$(brew --prefix llvm@19)/bin/clang" >> $GITHUB_ENV
|
||||
echo "OMPI_CXX=$(brew --prefix llvm@19)/bin/clang++" >> $GITHUB_ENV
|
||||
brew install llvm@20 enzyme
|
||||
echo "LLVM_PREFIX=$(brew --prefix llvm@20)" >> $GITHUB_ENV
|
||||
echo "OMPI_CC=$(brew --prefix llvm@20)/bin/clang" >> $GITHUB_ENV
|
||||
echo "OMPI_CXX=$(brew --prefix llvm@20)/bin/clang++" >> $GITHUB_ENV
|
||||
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
|
||||
+6
-4
@@ -211,7 +211,7 @@ miniapps/electromagnetics/joule
|
||||
miniapps/electromagnetics/Volta-AMR*
|
||||
miniapps/electromagnetics/Tesla-AMR*
|
||||
miniapps/electromagnetics/Maxwell-Parallel*
|
||||
miniapps/electromagnetics/Joule_*
|
||||
miniapps/electromagnetics/Joule_[0-9]*
|
||||
|
||||
miniapps/gslib/field-diff
|
||||
miniapps/gslib/field-interp
|
||||
@@ -267,9 +267,9 @@ miniapps/meshing/bounding-box*
|
||||
miniapps/meshing/jacobian-determinant*
|
||||
|
||||
miniapps/mtop/parheat
|
||||
miniapps/mtop/ParHeat*
|
||||
miniapps/mtop/ParHeat/*
|
||||
miniapps/mtop/seqheat
|
||||
miniapps/mtop/SeqHeat*
|
||||
miniapps/mtop/SeqHeat/*
|
||||
|
||||
miniapps/autodiff/paradiff
|
||||
miniapps/autodiff/seqadiff
|
||||
@@ -277,7 +277,7 @@ miniapps/autodiff/seqtest
|
||||
miniapps/autodiff/par_example
|
||||
miniapps/autodiff/seq_example
|
||||
miniapps/autodiff/seq_test
|
||||
miniapps/autodiff/Exampl*
|
||||
miniapps/autodiff/Example/*
|
||||
|
||||
miniapps/navier/navier_mms
|
||||
miniapps/navier/navier_kovasznay
|
||||
@@ -300,6 +300,7 @@ miniapps/nurbs/nurbs_solenoidal
|
||||
miniapps/nurbs/nurbs_printfunc
|
||||
miniapps/nurbs/nurbs_patch_ex1
|
||||
miniapps/nurbs/nurbs_curveint
|
||||
miniapps/nurbs/nurbs_surface
|
||||
miniapps/nurbs/refined.mesh
|
||||
miniapps/nurbs/mesh.*
|
||||
miniapps/nurbs/sol_?.gf
|
||||
@@ -318,6 +319,7 @@ miniapps/nurbs/nurbs_naca_cmesh
|
||||
miniapps/nurbs/naca-cmesh.mesh
|
||||
miniapps/nurbs/glvis_naca-cmesh.mesh
|
||||
miniapps/nurbs/Naca_cmesh
|
||||
miniapps/nurbs/*-Surface.mesh
|
||||
|
||||
miniapps/performance/ex1
|
||||
miniapps/performance/ex1p
|
||||
|
||||
+5
-5
@@ -22,7 +22,7 @@ include:
|
||||
# the "needs" keyword and express the DAG of jobs for more efficiency.
|
||||
# - We use setup and setup_baseline phases to download content outside of mfem
|
||||
# directory.
|
||||
# - Allocate/Release is where ruby resource are allocated/released once for all.
|
||||
# - Allocate/Release is where Dane resource are allocated/released once for all.
|
||||
# - Build and Test is where we build and MFEM for multiple toolchains.
|
||||
# - Baseline_checks gathers baseline-type test suites execution
|
||||
# - Baseline_publish, only available on master, allows to update baseline
|
||||
@@ -53,7 +53,7 @@ variables:
|
||||
AUTOTEST_COMMIT: "YES"
|
||||
|
||||
# Trigger subpipelines:
|
||||
ruby-build-and-test:
|
||||
dane-build-and-test:
|
||||
stage: sub-pipelines
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
@@ -61,10 +61,10 @@ ruby-build-and-test:
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/ruby-build-and-test.yml
|
||||
include: .gitlab/dane-build-and-test.yml
|
||||
strategy: depend
|
||||
|
||||
ruby-baseline:
|
||||
dane-baseline:
|
||||
stage: sub-pipelines
|
||||
variables:
|
||||
# Explicitly pass down values that we want to be able to set when triggering
|
||||
@@ -73,7 +73,7 @@ ruby-baseline:
|
||||
AUTOTEST: "${AUTOTEST}"
|
||||
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
|
||||
trigger:
|
||||
include: .gitlab/ruby-baseline.yml
|
||||
include: .gitlab/dane-baseline.yml
|
||||
strategy: depend
|
||||
|
||||
lassen-build-and-test:
|
||||
|
||||
+3
-3
@@ -24,7 +24,7 @@ and `test type`.
|
||||
|
||||
Machines typically include:
|
||||
|
||||
* Ruby: 2nd Gen Intel Xeon (Cascade Lake)
|
||||
* Dane: Intel Sapphire Rapids
|
||||
* Lassen: Power9 + Nvidia GPU
|
||||
* Corona: AMD GPU
|
||||
|
||||
@@ -76,13 +76,13 @@ with a spack spec of MFEM, within the limits permitted by the MFEM spack
|
||||
package.
|
||||
|
||||
In any build-and-test sub-pipeline a job basically consists in defining the
|
||||
spack spec to use. Adding a job on ruby for example resumes to:
|
||||
spack spec to use. Adding a job on Dane for example resumes to:
|
||||
|
||||
```yaml
|
||||
<job_name>:
|
||||
variables:
|
||||
SPEC: "<spack_spec>"
|
||||
extends: .build_and_test_on_ruby
|
||||
extends: .build_and_test_on_dane
|
||||
```
|
||||
|
||||
The remaining and non trivial work is to make sure this spec is working. To
|
||||
|
||||
@@ -24,7 +24,7 @@ variables:
|
||||
# TODO: add a clean-up mechanism
|
||||
BUILD_ROOT: ${USER_CI_TOP_DIR}/${CI_PROJECT_NAME}-${MACHINE_NAME}-pipeline-${CI_PIPELINE_ID}
|
||||
|
||||
# On LLNL's ruby, there is only one allocation shared among jobs in order to
|
||||
# On LLNL's Dane, there is only one allocation shared among jobs in order to
|
||||
# save time and resource. This allocation has to be uniquely named so that we
|
||||
# are sure to retrieve it.
|
||||
ALLOC_NAME: ${CI_PROJECT_NAME}_ci_${CI_PIPELINE_ID}
|
||||
|
||||
@@ -9,17 +9,17 @@
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# GitLab pipelines configurations for the Ruby machine at LLNL
|
||||
# GitLab pipelines configurations for the Dane machine at LLNL
|
||||
variables:
|
||||
MACHINE_NAME: ruby
|
||||
MACHINE_NAME: dane
|
||||
|
||||
.on_ruby:
|
||||
.on_dane:
|
||||
tags:
|
||||
- shell
|
||||
- ruby
|
||||
- dane
|
||||
rules:
|
||||
# Don't run ruby jobs if...
|
||||
- if: '$CI_COMMIT_BRANCH =~ /_qnone/ || $ON_RUBY == "OFF"'
|
||||
# Don't run dane jobs if...
|
||||
- if: '$CI_COMMIT_BRANCH =~ /_qnone/ || $ON_DANE == "OFF"'
|
||||
when: never
|
||||
# Don't run autotest update if...
|
||||
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
|
||||
@@ -40,16 +40,17 @@ variables:
|
||||
- when: on_success
|
||||
|
||||
# Spack helped builds
|
||||
# Generic ruby build job, extending build script
|
||||
.build_and_test_on_ruby:
|
||||
extends: [.on_ruby]
|
||||
# Generic dane build job, extending build script
|
||||
.build_and_test_on_dane:
|
||||
extends: [.on_dane]
|
||||
stage: build_and_test
|
||||
script:
|
||||
# THREADS is used by 'tests/gitlab/build_and_test', run below
|
||||
- export THREADS=16
|
||||
# Dane has 224 threads/node and we run 7 separate jobs: 224=7*32
|
||||
- export THREADS=28
|
||||
- echo ${ALLOC_NAME}
|
||||
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
|
||||
- echo ${JOBID}
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) --reservation=ci -t 45 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) --reservation=ci -t 60 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
@@ -18,7 +18,7 @@
|
||||
setup_baseline:
|
||||
tags:
|
||||
- shell
|
||||
- ruby
|
||||
- dane
|
||||
stage: setup
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
|
||||
@@ -16,7 +16,7 @@
|
||||
setup:
|
||||
tags:
|
||||
- shell
|
||||
- ruby
|
||||
- dane
|
||||
stage: setup
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
|
||||
@@ -19,8 +19,8 @@ stages:
|
||||
- cleanup
|
||||
- baseline_publish
|
||||
|
||||
baselinecheck_mfem_intel_ruby:
|
||||
extends: [.on_ruby]
|
||||
baselinecheck_mfem_intel_dane:
|
||||
extends: [.on_dane]
|
||||
stage: baseline_check
|
||||
variables:
|
||||
# TPLS_DIR is used in .gitlab/scripts/baseline to provide the tpls location
|
||||
@@ -31,8 +31,8 @@ baselinecheck_mfem_intel_ruby:
|
||||
script:
|
||||
- echo ${BUILD_ROOT}
|
||||
- echo ${TPLS_DIR}
|
||||
# Used by the tests in MFEM/tests:
|
||||
- export MFEM_TEST_NP=48
|
||||
# Used by the tests in MFEM/tests, dane has 224 threads/node:
|
||||
- export MFEM_TEST_NP=192
|
||||
# The next script uses the following environment variables:
|
||||
# * BASELINE_TEST, SYS_TYPE, CI_PROJECT_DIR, ARTIFACTS_DIR,
|
||||
# * BUILD_ROOT, TPLS_DIR, MACHINE_NAME
|
||||
@@ -44,7 +44,7 @@ baselinecheck_mfem_intel_ruby:
|
||||
allow_failure: true
|
||||
|
||||
cleanup:
|
||||
extends: .on_ruby
|
||||
extends: .on_dane
|
||||
stage: cleanup
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
@@ -53,7 +53,7 @@ cleanup:
|
||||
- rm -rf "${BUILD_ROOT}" || true
|
||||
|
||||
report_baseline:
|
||||
extends: [.on_ruby]
|
||||
extends: [.on_dane]
|
||||
stage: baseline_report
|
||||
script:
|
||||
- echo ${MACHINE_NAME}
|
||||
@@ -113,8 +113,8 @@ report_baseline:
|
||||
exit $err
|
||||
) 9> autotest.lock
|
||||
|
||||
baselinepublish_mfem_ruby:
|
||||
extends: [.on_ruby]
|
||||
baselinepublish_mfem_dane:
|
||||
extends: [.on_dane]
|
||||
stage: baseline_publish
|
||||
rules:
|
||||
# - if: '$CI_COMMIT_BRANCH == "master" || $REBASELINE == "YES"'
|
||||
@@ -129,5 +129,5 @@ baselinepublish_mfem_ruby:
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/ruby-config.yml
|
||||
- local: .gitlab/configs/dane-config.yml
|
||||
- local: .gitlab/configs/setup-baseline.yml
|
||||
@@ -19,54 +19,54 @@ stages:
|
||||
allocate_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_ruby
|
||||
extends: .on_dane
|
||||
stage: allocate_resource
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
- salloc --exclusive --nodes=1 --reservation=ci --time=60 --no-shell --job-name=${ALLOC_NAME}
|
||||
timeout: 6h
|
||||
|
||||
# GitLab jobs for the Ruby machine at LLNL
|
||||
# GitLab jobs for the Dane machine at LLNL
|
||||
debug_ser_gcc_10:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +debug~mpi"
|
||||
extends: .build_and_test_on_ruby
|
||||
extends: .build_and_test_on_dane
|
||||
|
||||
debug_par_gcc_10:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +debug+mpi"
|
||||
extends: .build_and_test_on_ruby
|
||||
extends: .build_and_test_on_dane
|
||||
|
||||
opt_ser_gcc_10:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 ~mpi"
|
||||
extends: .build_and_test_on_ruby
|
||||
extends: .build_and_test_on_dane
|
||||
|
||||
opt_par_gcc_10:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1"
|
||||
extends: .build_and_test_on_ruby
|
||||
extends: .build_and_test_on_dane
|
||||
|
||||
opt_par_gcc_10_sundials:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +sundials"
|
||||
extends: .build_and_test_on_ruby
|
||||
extends: .build_and_test_on_dane
|
||||
|
||||
opt_par_gcc_10_petsc:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
|
||||
extends: .build_and_test_on_ruby
|
||||
extends: .build_and_test_on_dane
|
||||
|
||||
opt_par_gcc_10_pumi:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +pumi"
|
||||
extends: .build_and_test_on_ruby
|
||||
extends: .build_and_test_on_dane
|
||||
|
||||
# Release
|
||||
release_resource:
|
||||
variables:
|
||||
GIT_STRATEGY: none
|
||||
extends: .on_ruby
|
||||
extends: .on_dane
|
||||
stage: release_resource_and_report
|
||||
script:
|
||||
- echo ${ALLOC_NAME}
|
||||
@@ -78,17 +78,17 @@ release_resource:
|
||||
report_job_success:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_ruby
|
||||
- .on_dane
|
||||
- .report_job_success
|
||||
|
||||
report_job_failure:
|
||||
stage: release_resource_and_report
|
||||
extends:
|
||||
- .on_ruby
|
||||
- .on_dane
|
||||
- .report_job_failure
|
||||
|
||||
include:
|
||||
- local: .gitlab/configs/common.yml
|
||||
- local: .gitlab/configs/ruby-config.yml
|
||||
- local: .gitlab/configs/dane-config.yml
|
||||
- local: .gitlab/configs/setup-build-and-test.yml
|
||||
- local: .gitlab/configs/report-build-and-test.yml
|
||||
@@ -14,7 +14,7 @@
|
||||
# locals
|
||||
glob_err=${BASELINE_TEST}.err
|
||||
base=${BASELINE_TEST}-${SYS_TYPE}
|
||||
if [[ "${MACHINE_NAME}" == "ruby" ]]; then
|
||||
if [[ "${MACHINE_NAME}" == "dane" ]]; then
|
||||
base="${BASELINE_TEST}-${MACHINE_NAME}"
|
||||
fi
|
||||
base_diff=${base}.diff
|
||||
@@ -31,7 +31,7 @@ cd tests
|
||||
mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
|
||||
|
||||
# run
|
||||
if [[ "${MACHINE_NAME}" == "ruby" ]]; then
|
||||
if [[ "${MACHINE_NAME}" == "dane" ]]; then
|
||||
salloc --nodes=1 --exclusive --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "corona" ]]; then
|
||||
salloc --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
|
||||
@@ -11,7 +11,7 @@
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# There will be collision between corona and ruby baselines.
|
||||
# There will be collision between corona and dane baselines.
|
||||
# Once the corresponding files have been generated, we can switch to machine
|
||||
# specific ref.
|
||||
ARTIFACT_PATH=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/baseline-${SYS_TYPE}
|
||||
@@ -21,7 +21,7 @@ PATCH_FILE=${ARTIFACT_PATH}.patch
|
||||
FULL_FILE=${ARTIFACT_PATH}.out
|
||||
DIFF_FILE=${ARTIFACT_PATH}.diff
|
||||
|
||||
# There will be collision between corona and ruby baselines.
|
||||
# There will be collision between corona and dane baselines.
|
||||
# Once the corresponding files have been generated, we can switch to machine
|
||||
# specific ref.
|
||||
SAVED_NAME=baseline-${SYS_TYPE}.saved
|
||||
|
||||
@@ -29,9 +29,14 @@ Discretization improvements
|
||||
|
||||
Meshing improvements
|
||||
--------------------
|
||||
|
||||
- Added support for higher order meshes in Mesh::MakeSimplicial and
|
||||
ParMesh::MakeSimplicial.
|
||||
|
||||
- Added a new miniapp for interpolating a surface grid of points in 3D using a
|
||||
smooth NURBS surface, that can then be sampled at arbitrary resolution while
|
||||
staying close to the original geometry. See miniapps/nurbs/nurbs_surface.
|
||||
|
||||
GPU computing
|
||||
-------------
|
||||
- The function Vector::SetSubVector(const Array<int> &, const real_t) now
|
||||
@@ -41,6 +46,11 @@ GPU computing
|
||||
where host execution is always needed (e.g. when the DOFs array is small).
|
||||
- Introduced MFEM_FOREACH_THREAD_DIRECT, which directly maps loop tasks to GPU
|
||||
threads, assigning one task per thread.
|
||||
- Implemented a GPU-accelerated matrix-free AMR derefinement `GridFunction`
|
||||
update operator. This supports mixed geometry meshes and variable order
|
||||
spaces, and is the default derefinement operator constructed by
|
||||
`FiniteElementSpace::Update` and `ParFiniteElementSpace::Update`.
|
||||
The operator requires `FiniteElementSpace::Nonconforming() == true`.
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
|
||||
+14
-5
@@ -598,14 +598,20 @@ set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
|
||||
BENCHMARK PARELAG TRIBOL MPI_CXX HIP HIPBLAS HIPSPARSE MOONOLITH BLITZ
|
||||
ALGOIM ENZYME)
|
||||
|
||||
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
|
||||
# Add all created targets and *_FOUND libraries in the variables TPL_TARGETS and
|
||||
# TPL_LIBRARIES, respectively.
|
||||
set(TPL_TARGETS)
|
||||
set(TPL_LIBRARIES "")
|
||||
set(TPL_INCLUDE_DIRS "")
|
||||
foreach(TPL IN LISTS MFEM_TPLS)
|
||||
if (${TPL}_FOUND)
|
||||
if (${TPL}_FOUND OR TARGET ${TPL})
|
||||
message(STATUS "MFEM: using package ${TPL}")
|
||||
list(APPEND TPL_LIBRARIES ${${TPL}_LIBRARIES})
|
||||
list(APPEND TPL_INCLUDE_DIRS ${${TPL}_INCLUDE_DIRS})
|
||||
if (TARGET ${TPL})
|
||||
list(APPEND TPL_TARGETS ${TPL})
|
||||
else()
|
||||
list(APPEND TPL_LIBRARIES ${${TPL}_LIBRARIES})
|
||||
list(APPEND TPL_INCLUDE_DIRS ${${TPL}_INCLUDE_DIRS})
|
||||
endif()
|
||||
endif()
|
||||
endforeach(TPL)
|
||||
list(REVERSE TPL_LIBRARIES)
|
||||
@@ -680,7 +686,10 @@ set(MFEM_INSTALL_DIR ${CMAKE_INSTALL_PREFIX})
|
||||
# Declaring the library
|
||||
mfem_add_library(mfem ${SOURCES} ${HEADERS} ${MASTER_HEADERS})
|
||||
# message(STATUS "TPL_LIBRARIES = ${TPL_LIBRARIES}")
|
||||
target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES})
|
||||
target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES} ${TPL_TARGETS})
|
||||
if (TPL_TARGETS)
|
||||
add_dependencies(mfem ${TPL_TARGETS})
|
||||
endif()
|
||||
if (MINGW)
|
||||
target_link_libraries(mfem PRIVATE ws2_32)
|
||||
endif()
|
||||
|
||||
@@ -121,6 +121,11 @@ Parallel build:
|
||||
make -j 4
|
||||
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
|
||||
|
||||
Parallel build with fetching of hypre and METIS:
|
||||
mkdir <mfem-buil-dir> ; cd <mfem-build-dir>
|
||||
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES -DFETCH_TPLS=YES
|
||||
make -j 4
|
||||
|
||||
CUDA build:
|
||||
(this build requires CMake 3.17 or newer)
|
||||
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
|
||||
@@ -663,6 +668,7 @@ The specific libraries and their options are:
|
||||
- OpenMP (optional), usually part of compiler, used when either MFEM_USE_OPENMP
|
||||
or MFEM_USE_LEGACY_OPENMP is set to YES.
|
||||
Options: OPENMP_OPT, OPENMP_LIB.
|
||||
Versions: OpenMP >= 3.1 when MFEM_USE_OPENMP=YES.
|
||||
|
||||
- High-resolution POSIX clocks: when using MFEM_TIMER_TYPE = 2, it may be
|
||||
necessary to link with a system library (e.g. librt.so).
|
||||
@@ -842,6 +848,7 @@ The specific libraries and their options are:
|
||||
- HIP (optional), used when MFEM_USE_HIP = YES.
|
||||
URL: https://rocmdocs.amd.com
|
||||
Options: HIP_CXX, HIP_ARCH, HIP_OPT, HIP_LIB.
|
||||
Versions: ROCm >= 5.6.1.
|
||||
|
||||
- OCCA (optional), used when MFEM_USE_OCCA = YES.
|
||||
URL: https://libocca.org
|
||||
@@ -1074,6 +1081,9 @@ The following options are CMake specific:
|
||||
MFEM_ENABLE_TESTING - Enable the ctest framework for testing.
|
||||
MFEM_ENABLE_EXAMPLES - Build all of the examples by default.
|
||||
MFEM_ENABLE_MINIAPPS - Build all of the miniapps by default.
|
||||
FETCH_TPLS - Enable fetching of all supported third-party libraries.
|
||||
HYPRE_FETCH - Enable fetching of hypre.
|
||||
METIS_FETCH - Enable fetching of metis.
|
||||
|
||||
External libraries (CMake):
|
||||
---------------------------
|
||||
@@ -1135,6 +1145,12 @@ The following built-in CMake packages are also used:
|
||||
set the <LIBNAME>_LIBRARIES option directly; the configuration option
|
||||
<LIBNAME>_DIR is not supported.
|
||||
|
||||
The MFEM CMake build system also provides fetching (automated building) for the
|
||||
packages/libraries listed below. Note that when fetching is enabled, any related
|
||||
auto-detection functionality is disabled.
|
||||
|
||||
- HYPRE
|
||||
- METIS
|
||||
|
||||
Building without GNU make or CMake
|
||||
==================================
|
||||
|
||||
@@ -9,15 +9,18 @@
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# Defines the following variables if fetching of TPLs is disabled (default):
|
||||
# - HYPRE_FOUND
|
||||
# - HYPRE_LIBRARIES
|
||||
# - HYPRE_INCLUDE_DIRS
|
||||
# - HYPRE_VERSION
|
||||
# - HYPRE_USING_CUDA (internal)
|
||||
# - HYPRE_USING_HIP (internal)
|
||||
# otherwise, the following are defined:
|
||||
# - HYPRE (imported library target)
|
||||
# - HYPRE_VERSION (cache variable)
|
||||
|
||||
if (HYPRE_FOUND)
|
||||
if (HYPRE_FOUND OR TARGET HYPRE)
|
||||
if (HYPRE_USING_CUDA)
|
||||
find_package(CUDAToolkit REQUIRED)
|
||||
endif()
|
||||
@@ -33,6 +36,55 @@ if (HYPRE_FOUND)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
if (HYPRE_FETCH OR FETCH_TPLS)
|
||||
set(HYPRE_FETCH_VERSION 2.33.0)
|
||||
add_library(HYPRE STATIC IMPORTED)
|
||||
# set options and associated dependencies
|
||||
set(CMAKE_OPTIONS)
|
||||
list(APPEND CMAKE_OPTIONS -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE})
|
||||
if (MFEM_USE_CUDA)
|
||||
list(APPEND CMAKE_OPTIONS -DHYPRE_WITH_CUDA:BOOL=ON)
|
||||
find_package(CUDAToolkit REQUIRED)
|
||||
target_link_libraries(HYPRE INTERFACE CUDA::cusparse CUDA::curand CUDA::cublas)
|
||||
elseif (MFEM_USE_HIP)
|
||||
list(APPEND CMAKE_OPTIONS -DHYPRE_WITH_HIP:BOOL=ON)
|
||||
find_package(rocsparse REQUIRED)
|
||||
find_package(rocrand REQUIRED)
|
||||
target_link_libraries(HYPRE INTERFACE rocsparse rocrand)
|
||||
endif()
|
||||
if (MFEM_USE_SINGLE)
|
||||
list(APPEND CMAKE_OPTIONS -DHYPRE_ENABLE_SINGLE:BOOL=ON)
|
||||
endif()
|
||||
# define external project and create future include directory so it is present
|
||||
# to pass CMake checks at end of MFEM configuration step
|
||||
message(STATUS "Will fetch HYPRE ${HYPRE_FETCH_VERSION} to be built with ${CMAKE_OPTIONS}")
|
||||
set(PREFIX ${CMAKE_BINARY_DIR}/fetch/hypre)
|
||||
include(ExternalProject)
|
||||
ExternalProject_Add(hypre
|
||||
GIT_REPOSITORY https://github.com/hypre-space/hypre.git
|
||||
GIT_TAG v${HYPRE_FETCH_VERSION}
|
||||
GIT_SHALLOW TRUE
|
||||
UPDATE_DISCONNECTED TRUE
|
||||
SOURCE_SUBDIR src
|
||||
PREFIX ${PREFIX}
|
||||
CMAKE_CACHE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${PREFIX} -DCMAKE_INSTALL_LIBDIR:PATH=lib ${CMAKE_OPTIONS})
|
||||
file(MAKE_DIRECTORY ${PREFIX}/include)
|
||||
# set imported library target properties
|
||||
add_dependencies(HYPRE hypre)
|
||||
set_target_properties(HYPRE PROPERTIES
|
||||
IMPORTED_LOCATION ${PREFIX}/lib/libHYPRE.a
|
||||
INTERFACE_INCLUDE_DIRECTORIES ${PREFIX}/include)
|
||||
# convert HYPRE version to integer
|
||||
string(REGEX MATCHALL "[0-9]+" HYPRE_SPLIT_VERSION ${HYPRE_FETCH_VERSION})
|
||||
list(GET HYPRE_SPLIT_VERSION 0 HYPRE_MAJOR_VERSION)
|
||||
list(GET HYPRE_SPLIT_VERSION 1 HYPRE_MINOR_VERSION)
|
||||
list(GET HYPRE_SPLIT_VERSION 2 HYPRE_PATCH_VERSION)
|
||||
math(EXPR HYPRE_VERSION "10000*${HYPRE_MAJOR_VERSION} + 100*${HYPRE_MINOR_VERSION} + ${HYPRE_PATCH_VERSION}")
|
||||
# set cache variables that would otherwise be set after mfem_find_package call
|
||||
set(HYPRE_VERSION ${HYPRE_VERSION} CACHE STRING "HYPRE version." FORCE)
|
||||
return()
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(HYPRE HYPRE HYPRE_DIR "include" "HYPRE.h" "lib" "HYPRE"
|
||||
"Paths to headers required by HYPRE." "Libraries required by HYPRE."
|
||||
|
||||
@@ -9,10 +9,38 @@
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# Defines the following variables if fetching of TPLs is disabled (default):
|
||||
# - METIS_FOUND
|
||||
# - METIS_LIBRARIES
|
||||
# - METIS_INCLUDE_DIRS
|
||||
# - METIS_VERSION_5
|
||||
# otherwise, the following are defined:
|
||||
# - METIS (imported library target)
|
||||
# - METIS_VERSION_5 (cache variable)
|
||||
|
||||
if (METIS_FETCH OR FETCH_TPLS)
|
||||
set(METIS_FETCH_VERSION 4.0.3)
|
||||
add_library(METIS STATIC IMPORTED)
|
||||
# define external project
|
||||
message(STATUS "Will fetch METIS ${METIS_FETCH_VERSION} to be built with default options")
|
||||
set(PREFIX ${CMAKE_BINARY_DIR}/fetch/metis)
|
||||
include(ExternalProject)
|
||||
ExternalProject_Add(metis
|
||||
GIT_REPOSITORY https://github.com/mfem/tpls
|
||||
GIT_TAG b60352fbe9675d374b00828055e55be4584c7995 # tag from 1/16/25
|
||||
GIT_SHALLOW TRUE
|
||||
UPDATE_DISCONNECTED TRUE
|
||||
PREFIX ${PREFIX}
|
||||
CONFIGURE_COMMAND tar -xzf ../metis/metis-${METIS_FETCH_VERSION}-mac.tgz --strip=1
|
||||
INSTALL_COMMAND mkdir -p ${PREFIX}/lib && cp libmetis.a ${PREFIX}/lib/)
|
||||
# set imported library target properties
|
||||
add_dependencies(METIS metis)
|
||||
set_target_properties(METIS PROPERTIES
|
||||
IMPORTED_LOCATION ${PREFIX}/lib/libmetis.a)
|
||||
# set cache variables that would otherwise be set after mfem_find_package call
|
||||
set(METIS_VERSION_5 FALSE CACHE BOOL "Is METIS version 5?")
|
||||
return()
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(METIS METIS METIS_DIR "include;Lib" "metis.h"
|
||||
|
||||
+4
-1
@@ -23,11 +23,14 @@
|
||||
#include "_config.hpp"
|
||||
#endif
|
||||
|
||||
#include <cstdint>
|
||||
#include <climits>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
#if (defined(MFEM_USE_CUDA) && defined(__CUDACC__)) || \
|
||||
(defined(MFEM_USE_HIP) && defined(__HIPCC__))
|
||||
(defined(MFEM_USE_HIP) && defined(__HIP__))
|
||||
#define MFEM_HOST_DEVICE __host__ __device__
|
||||
#else
|
||||
#define MFEM_HOST_DEVICE
|
||||
|
||||
@@ -89,6 +89,12 @@ option(MFEM_ENABLE_EXAMPLES "Build all of the examples" OFF)
|
||||
option(MFEM_ENABLE_MINIAPPS "Build all of the miniapps" OFF)
|
||||
option(MFEM_ENABLE_BENCHMARKS "Build all of the benchmarks" OFF)
|
||||
|
||||
# Allow a user to specify fetching of certain third-party libraries instead of
|
||||
# searching for existing installations.
|
||||
option(FETCH_TPLS "Enable fetching of all supported third-party libraries" OFF)
|
||||
option(HYPRE_FETCH "Enable fetching of hypre" OFF)
|
||||
option(METIS_FETCH "Enable fetching of METIS" OFF)
|
||||
|
||||
# Setting CXX/MPICXX on the command line or in user.cmake will overwrite the
|
||||
# autodetected C++ compiler.
|
||||
# set(CXX g++)
|
||||
|
||||
@@ -82,6 +82,8 @@ set(SRCS
|
||||
fe/fe_ser.cpp
|
||||
fe_coll.cpp
|
||||
fespace.cpp
|
||||
derefmat_op.cpp
|
||||
pderefmat_op.cpp
|
||||
geom.cpp
|
||||
gridfunc.cpp
|
||||
hybridization.cpp
|
||||
|
||||
+34
-64
@@ -255,6 +255,8 @@ PABilinearFormExtension::PABilinearFormExtension(BilinearForm *form)
|
||||
|
||||
void PABilinearFormExtension::SetupRestrictionOperators(const L2FaceValues m)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
if ( Device::Allows(Backend::CEED_MASK) ) { return; }
|
||||
ElementDofOrdering ordering = GetEVectorOrdering(*a->FESpace());
|
||||
elem_restrict = trial_fes->GetElementRestriction(ordering);
|
||||
@@ -266,11 +268,7 @@ void PABilinearFormExtension::SetupRestrictionOperators(const L2FaceValues m)
|
||||
|
||||
// Gather the attributes on the host from all the elements
|
||||
const Mesh &mesh = *trial_fes->GetMesh();
|
||||
elem_attributes.SetSize(mesh.GetNE());
|
||||
for (int i = 0; i < mesh.GetNE(); ++i)
|
||||
{
|
||||
elem_attributes[i] = mesh.GetAttribute(i);
|
||||
}
|
||||
elem_attributes = &mesh.GetElementAttributes();
|
||||
}
|
||||
|
||||
// Construct face restriction operators only if the bilinear form has
|
||||
@@ -329,50 +327,14 @@ void PABilinearFormExtension::SetupRestrictionOperators(const L2FaceValues m)
|
||||
bdr_face_dYdn.SetSize(bdr_face_restrict_lex->Height());
|
||||
}
|
||||
|
||||
const Mesh &mesh = *trial_fes->GetMesh();
|
||||
// See LinearFormExtension::Update for explanation of f_to_be logic.
|
||||
std::unordered_map<int,int> f_to_be;
|
||||
for (int i = 0; i < mesh.GetNBE(); ++i)
|
||||
{
|
||||
const int f = mesh.GetBdrElementFaceIndex(i);
|
||||
f_to_be[f] = i;
|
||||
}
|
||||
const int nf_bdr = trial_fes->GetNFbyType(FaceType::Boundary);
|
||||
bdr_attributes.SetSize(nf_bdr);
|
||||
int f_ind = 0;
|
||||
int missing_bdr_elems = 0;
|
||||
for (int f = 0; f < mesh.GetNumFaces(); ++f)
|
||||
{
|
||||
if (!mesh.GetFaceInformation(f).IsOfFaceType(FaceType::Boundary))
|
||||
{
|
||||
continue;
|
||||
}
|
||||
int attribute = 1; // default value
|
||||
if (f_to_be.find(f) != f_to_be.end())
|
||||
{
|
||||
const int be = f_to_be[f];
|
||||
attribute = mesh.GetBdrAttribute(be);
|
||||
}
|
||||
else
|
||||
{
|
||||
// If a boundary face does not correspond to the a boundary element,
|
||||
// we assign it the default attribute of 1. We also generate a
|
||||
// warning at runtime with the number of such missing elements.
|
||||
++missing_bdr_elems;
|
||||
}
|
||||
bdr_attributes[f_ind] = attribute;
|
||||
++f_ind;
|
||||
}
|
||||
if (missing_bdr_elems)
|
||||
{
|
||||
MFEM_WARNING("Missing " << missing_bdr_elems << " boundary elements "
|
||||
"for boundary faces.");
|
||||
}
|
||||
bdr_face_attributes = &trial_fes->GetMesh()->GetBdrFaceAttributes();
|
||||
}
|
||||
}
|
||||
|
||||
void PABilinearFormExtension::Assemble()
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
SetupRestrictionOperators(L2FaceValues::DoubleValued);
|
||||
|
||||
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
|
||||
@@ -429,7 +391,7 @@ void PABilinearFormExtension::AssembleDiagonal(Vector &y) const
|
||||
mfem::forall(ne, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
const int attr = d_attr[e];
|
||||
if (d_m[attr - 1] == 0)
|
||||
if (attr <= 0 || d_m[attr - 1] == 0)
|
||||
{
|
||||
for (int i = 0; i < nd; ++i)
|
||||
{
|
||||
@@ -450,7 +412,7 @@ void PABilinearFormExtension::AssembleDiagonal(Vector &y) const
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
assemble_diagonal_with_markers(*integrators[i], elem_markers[i],
|
||||
elem_attributes, localY);
|
||||
*elem_attributes, localY);
|
||||
}
|
||||
const ElementRestriction* H1elem_restrict =
|
||||
dynamic_cast<const ElementRestriction*>(elem_restrict);
|
||||
@@ -476,7 +438,7 @@ void PABilinearFormExtension::AssembleDiagonal(Vector &y) const
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
assemble_diagonal_with_markers(*integrators[i], elem_markers[i],
|
||||
elem_attributes, y);
|
||||
*elem_attributes, y);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -489,7 +451,7 @@ void PABilinearFormExtension::AssembleDiagonal(Vector &y) const
|
||||
for (int i = 0; i < n_bdr_integs; ++i)
|
||||
{
|
||||
assemble_diagonal_with_markers(*bdr_integs[i], bdr_markers[i],
|
||||
bdr_attributes, bdr_face_Y);
|
||||
*bdr_face_attributes, bdr_face_Y);
|
||||
}
|
||||
bdr_face_restrict_lex->AddAbsMultTranspose(bdr_face_Y, y);
|
||||
}
|
||||
@@ -529,6 +491,8 @@ void PABilinearFormExtension::FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
void PABilinearFormExtension::MultInternal(const Vector &x, Vector &y,
|
||||
const bool useAbs) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
|
||||
|
||||
const int iSz = integrators.Size();
|
||||
@@ -588,7 +552,7 @@ void PABilinearFormExtension::MultInternal(const Vector &x, Vector &y,
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*integrators[i], localX, elem_markers[i],
|
||||
elem_attributes, false, localY, useAbs);
|
||||
*elem_attributes, false, localY, useAbs);
|
||||
}
|
||||
if (H1elem_restrict && useAbs)
|
||||
{
|
||||
@@ -690,8 +654,8 @@ void PABilinearFormExtension::MultInternal(const Vector &x, Vector &y,
|
||||
}
|
||||
for (int i = 0; i < n_bdr_integs; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*bdr_integs[i], bdr_face_X, bdr_markers[i], bdr_attributes,
|
||||
false, bdr_face_Y);
|
||||
AddMultWithMarkers(*bdr_integs[i], bdr_face_X, bdr_markers[i],
|
||||
*bdr_face_attributes, false, bdr_face_Y);
|
||||
}
|
||||
for (int i = 0; i < n_bdr_face_integs; ++i)
|
||||
{
|
||||
@@ -699,12 +663,14 @@ void PABilinearFormExtension::MultInternal(const Vector &x, Vector &y,
|
||||
{
|
||||
AddMultNormalDerivativesWithMarkers(
|
||||
*bdr_face_integs[i], bdr_face_X, bdr_face_dXdn,
|
||||
bdr_face_markers[i], bdr_attributes, bdr_face_Y, bdr_face_dYdn);
|
||||
bdr_face_markers[i], *bdr_face_attributes, bdr_face_Y,
|
||||
bdr_face_dYdn);
|
||||
}
|
||||
else
|
||||
{
|
||||
AddMultWithMarkers(*bdr_face_integs[i], bdr_face_X, bdr_face_markers[i],
|
||||
bdr_attributes, false, bdr_face_Y);
|
||||
AddMultWithMarkers(*bdr_face_integs[i], bdr_face_X,
|
||||
bdr_face_markers[i], *bdr_face_attributes, false,
|
||||
bdr_face_Y);
|
||||
}
|
||||
}
|
||||
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
|
||||
@@ -727,7 +693,7 @@ void PABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
localY = 0.0;
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*integrators[i], localX, elem_markers[i], elem_attributes,
|
||||
AddMultWithMarkers(*integrators[i], localX, elem_markers[i], *elem_attributes,
|
||||
true, localY);
|
||||
}
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
@@ -774,13 +740,14 @@ void PABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
bdr_face_Y = 0.0;
|
||||
for (int i = 0; i < n_bdr_integs; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*bdr_integs[i], bdr_face_X, bdr_markers[i], bdr_attributes,
|
||||
true, bdr_face_Y);
|
||||
AddMultWithMarkers(*bdr_integs[i], bdr_face_X, bdr_markers[i],
|
||||
*bdr_face_attributes, true, bdr_face_Y);
|
||||
}
|
||||
for (int i = 0; i < n_bdr_face_integs; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*bdr_face_integs[i], bdr_face_X, bdr_face_markers[i],
|
||||
bdr_attributes, true, bdr_face_Y);
|
||||
AddMultWithMarkers(*bdr_face_integs[i], bdr_face_X,
|
||||
bdr_face_markers[i], *bdr_face_attributes, true,
|
||||
bdr_face_Y);
|
||||
}
|
||||
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
|
||||
}
|
||||
@@ -804,7 +771,7 @@ static void AddWithMarkers_(
|
||||
mfem::forall(ne, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
const int attr = d_attr[e];
|
||||
if (d_m[attr - 1] == 0) { return; }
|
||||
if (attr <= 0 || d_m[attr - 1] == 0) { return; }
|
||||
for (int i = 0; i < nd; ++i)
|
||||
{
|
||||
d_y(i, e) += d_x(i, e);
|
||||
@@ -898,6 +865,7 @@ EABilinearFormExtension::EABilinearFormExtension(BilinearForm *form)
|
||||
|
||||
void EABilinearFormExtension::Assemble()
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
SetupRestrictionOperators(L2FaceValues::SingleValued);
|
||||
|
||||
ne = trial_fes->GetMesh()->GetNE();
|
||||
@@ -920,7 +888,8 @@ void EABilinearFormExtension::Assemble()
|
||||
{
|
||||
const int i = idx % sz;
|
||||
const int e = idx / sz;
|
||||
const real_t val = d_m[d_a[e] - 1] ? d_ea_1(i, e) : 0.0;
|
||||
const real_t val =
|
||||
d_a[e] > 0 ? (d_m[d_a[e] - 1] ? d_ea_1(i, e) : 0) : 0;
|
||||
if (add)
|
||||
{
|
||||
d_ea_2(i, e) += val;
|
||||
@@ -953,7 +922,7 @@ void EABilinearFormExtension::Assemble()
|
||||
ea_data_tmp.SetSize(ea_data.Size());
|
||||
integrators[i]->AssembleEA(*a->FESpace(), ea_data_tmp, false);
|
||||
add_with_markers(ea_data_tmp, ea_data, ne, *markers,
|
||||
elem_attributes, add);
|
||||
*elem_attributes, add);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -982,7 +951,7 @@ void EABilinearFormExtension::Assemble()
|
||||
ea_data_tmp.SetSize(ea_data_bdr.Size());
|
||||
bdr_integs[i]->AssembleEABoundary(*a->FESpace(), ea_data_tmp, add);
|
||||
add_with_markers(ea_data_tmp, ea_data_bdr, nf_bdr, *markers,
|
||||
bdr_attributes, add);
|
||||
*bdr_face_attributes, add);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1031,7 +1000,7 @@ void EABilinearFormExtension::Assemble()
|
||||
ea_data_tmp,
|
||||
add);
|
||||
add_with_markers(ea_data_tmp, ea_data_bdr, nf_bdr, *markers,
|
||||
bdr_attributes, add);
|
||||
*bdr_face_attributes, add);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1445,6 +1414,7 @@ FABilinearFormExtension::FABilinearFormExtension(BilinearForm *form)
|
||||
|
||||
void FABilinearFormExtension::Assemble()
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
EABilinearFormExtension::Assemble();
|
||||
FiniteElementSpace &fes = *a->FESpace();
|
||||
int width = fes.GetVSize();
|
||||
|
||||
@@ -69,7 +69,8 @@ class PABilinearFormExtension : public BilinearFormExtension
|
||||
protected:
|
||||
const FiniteElementSpace *trial_fes, *test_fes; // Not owned
|
||||
/// Attributes of all mesh elements.
|
||||
Array<int> elem_attributes, bdr_attributes;
|
||||
const Array<int> *elem_attributes; // Not owned
|
||||
const Array<int> *bdr_face_attributes; // Not owned
|
||||
mutable Vector tmp_evec; // Work array
|
||||
mutable Vector localX, localY;
|
||||
mutable Vector int_face_X, int_face_Y;
|
||||
|
||||
+10
-10
@@ -812,7 +812,7 @@ protected:
|
||||
const FiniteElement & test_fe) const
|
||||
{
|
||||
return (trial_fe.GetDim() == 1 && test_fe.GetDim() == 1 &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::GRAD &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::GRAD &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::SCALAR );
|
||||
}
|
||||
|
||||
@@ -884,7 +884,7 @@ protected:
|
||||
const FiniteElement & trial_fe,
|
||||
const FiniteElement & test_fe) const
|
||||
{
|
||||
return (trial_fe.GetDerivType() == mfem::FiniteElement::DIV &&
|
||||
return (trial_fe.GetDerivType() == mfem::FiniteElement::DIV &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::SCALAR );
|
||||
}
|
||||
|
||||
@@ -919,7 +919,7 @@ protected:
|
||||
const FiniteElement & trial_fe,
|
||||
const FiniteElement & test_fe) const
|
||||
{
|
||||
return (trial_fe.GetDerivType() == mfem::FiniteElement::DIV &&
|
||||
return (trial_fe.GetDerivType() == mfem::FiniteElement::DIV &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::VECTOR );
|
||||
}
|
||||
|
||||
@@ -1600,7 +1600,7 @@ public:
|
||||
{
|
||||
return (trial_fe.GetCurlDim() == 3 && test_fe.GetRangeDim() == 3 &&
|
||||
trial_fe.GetRangeType() == mfem::FiniteElement::VECTOR &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::CURL &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::CURL &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::VECTOR );
|
||||
}
|
||||
|
||||
@@ -1635,7 +1635,7 @@ public:
|
||||
{
|
||||
return (trial_fe.GetDim() == 2 && test_fe.GetDim() == 2 &&
|
||||
trial_fe.GetRangeType() == mfem::FiniteElement::VECTOR &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::CURL &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::CURL &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::VECTOR );
|
||||
}
|
||||
|
||||
@@ -1669,7 +1669,7 @@ public:
|
||||
{
|
||||
return (trial_fe.GetDim() == 2 && test_fe.GetDim() == 2 &&
|
||||
trial_fe.GetRangeType() == mfem::FiniteElement::SCALAR &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::GRAD &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::GRAD &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::SCALAR );
|
||||
}
|
||||
|
||||
@@ -1760,7 +1760,7 @@ public:
|
||||
const FiniteElement & test_fe) const
|
||||
{
|
||||
return (trial_fe.GetRangeType() == mfem::FiniteElement::SCALAR &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::GRAD &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::GRAD &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::SCALAR );
|
||||
}
|
||||
|
||||
@@ -1793,7 +1793,7 @@ public:
|
||||
const FiniteElement & test_fe) const
|
||||
{
|
||||
return (trial_fe.GetRangeType() == mfem::FiniteElement::SCALAR &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::GRAD &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::GRAD &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::VECTOR &&
|
||||
test_fe.GetDerivType() == mfem::FiniteElement::DIV );
|
||||
}
|
||||
@@ -1832,7 +1832,7 @@ public:
|
||||
const FiniteElement & test_fe) const
|
||||
{
|
||||
return (trial_fe.GetRangeType() == mfem::FiniteElement::VECTOR &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::DIV &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::DIV &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::SCALAR &&
|
||||
test_fe.GetDerivType() == mfem::FiniteElement::GRAD
|
||||
);
|
||||
@@ -1973,7 +1973,7 @@ protected:
|
||||
const FiniteElement & test_fe) const override
|
||||
{
|
||||
return (trial_fe.GetCurlDim() == 3 && test_fe.GetRangeDim() == 3 &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::CURL &&
|
||||
trial_fe.GetDerivType() == mfem::FiniteElement::CURL &&
|
||||
test_fe.GetRangeType() == mfem::FiniteElement::VECTOR );
|
||||
}
|
||||
|
||||
|
||||
@@ -50,6 +50,7 @@ ElementTransformation *RefinedToCoarse(
|
||||
|
||||
void Coefficient::Project(QuadratureFunction &qf)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
QuadratureSpaceBase &qspace = *qf.GetSpace();
|
||||
const int ne = qspace.GetNE();
|
||||
Vector values;
|
||||
|
||||
@@ -912,7 +912,7 @@ ConduitDataCollection::GridFunctionToBlueprintField(mfem::GridFunction *gf,
|
||||
|
||||
if (vdim == 1) // scalar case
|
||||
{
|
||||
n_field["values"].set_external(gf->GetData(),
|
||||
n_field["values"].set_external(const_cast<real_t *>(gf->HostRead()),
|
||||
ndofs);
|
||||
}
|
||||
else // vector case
|
||||
@@ -925,18 +925,18 @@ ConduitDataCollection::GridFunctionToBlueprintField(mfem::GridFunction *gf,
|
||||
int vdim_stride = (ordering == Ordering::byNODES ? ndofs : 1);
|
||||
|
||||
index_t offset = 0;
|
||||
index_t stride = sizeof(double) * entry_stride;
|
||||
index_t stride = sizeof(real_t) * entry_stride;
|
||||
|
||||
for (int d = 0; d < vdim; d++)
|
||||
{
|
||||
std::ostringstream oss;
|
||||
oss << "v" << d;
|
||||
std::string comp_name = oss.str();
|
||||
n_field["values"][comp_name].set_external(gf->GetData(),
|
||||
n_field["values"][comp_name].set_external(const_cast<real_t *>(gf->HostRead()),
|
||||
ndofs,
|
||||
offset,
|
||||
stride);
|
||||
offset += sizeof(double) * vdim_stride;
|
||||
offset += sizeof(real_t) * vdim_stride;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -0,0 +1,266 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "derefmat_op.hpp"
|
||||
#include "fes_kernels.hpp"
|
||||
|
||||
/// \cond DO_NOT_DOCUMENT
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace internal
|
||||
{
|
||||
template <Ordering::Type Order, bool Atomic>
|
||||
static void DerefMultKernelImpl(const DerefineMatrixOp &op, const Vector &x,
|
||||
Vector &y)
|
||||
{
|
||||
DerefineMatrixOpMultFunctor<Order, Atomic> func;
|
||||
func.xptr = x.Read();
|
||||
y.UseDevice();
|
||||
y = 0.;
|
||||
func.yptr = y.ReadWrite();
|
||||
func.bsptr = op.block_storage.Read();
|
||||
func.boptr = op.block_offsets.Read();
|
||||
func.brptr = op.block_row_idcs_offsets.Read();
|
||||
func.bcptr = op.block_col_idcs_offsets.Read();
|
||||
func.rptr = op.row_idcs.Read();
|
||||
func.cptr = op.col_idcs.Read();
|
||||
func.vdims = op.fespace->GetVDim();
|
||||
func.nblocks = op.block_offsets.Size();
|
||||
func.width = op.Width() / func.vdims;
|
||||
func.height = op.Height() / func.vdims;
|
||||
func.Run(op.max_rows);
|
||||
}
|
||||
|
||||
} // namespace internal
|
||||
|
||||
DerefineMatrixOp::DerefineMatrixOp(FiniteElementSpace &fespace_, int old_ndofs,
|
||||
const Table *old_elem_dof,
|
||||
const Table *old_elem_fos)
|
||||
: Operator(fespace_.GetVSize(), old_ndofs * fespace_.GetVDim()),
|
||||
fespace(&fespace_)
|
||||
{
|
||||
static Kernels kernels;
|
||||
constexpr int max_team_size = 256;
|
||||
/// TODO: Implement DofTransformation support
|
||||
|
||||
MFEM_VERIFY(fespace->Nonconforming(),
|
||||
"Not implemented for conforming meshes.");
|
||||
MFEM_VERIFY(old_ndofs, "Missing previous (finer) space.");
|
||||
MFEM_VERIFY(fespace->GetNDofs() <= old_ndofs,
|
||||
"Previous space is not finer.");
|
||||
|
||||
const CoarseFineTransformations &dtrans =
|
||||
fespace->GetMesh()->ncmesh->GetDerefinementTransforms();
|
||||
|
||||
MFEM_ASSERT(dtrans.embeddings.Size() == old_elem_dof->Size(), "");
|
||||
|
||||
const bool is_dg = fespace->FEColl()->GetContType()
|
||||
== FiniteElementCollection::DISCONTINUOUS;
|
||||
DenseMatrix localRVO; // for variable-order only
|
||||
|
||||
DenseTensor localR[Geometry::NumGeom];
|
||||
int total_rows = 0;
|
||||
int total_cols = 0;
|
||||
block_offsets.SetSize(dtrans.embeddings.Size());
|
||||
block_offsets.HostWrite();
|
||||
if (fespace->IsVariableOrder())
|
||||
{
|
||||
// TODO: any potential for some compression here?
|
||||
// determine storage size and offsets
|
||||
block_offsets[0] = 0;
|
||||
int total_size = 0;
|
||||
for (int k = 0; k < dtrans.embeddings.Size(); ++k)
|
||||
{
|
||||
const Embedding &emb = dtrans.embeddings[k];
|
||||
const FiniteElement *fe = fespace->GetFE(emb.parent);
|
||||
const int ldof = fe->GetDof();
|
||||
if (k + 1 < dtrans.embeddings.Size())
|
||||
{
|
||||
block_offsets[k + 1] = block_offsets[k] + ldof * ldof;
|
||||
}
|
||||
total_rows += ldof;
|
||||
total_cols += ldof;
|
||||
total_size += ldof * ldof;
|
||||
}
|
||||
block_storage.SetSize(total_size);
|
||||
}
|
||||
else
|
||||
{
|
||||
// compression scheme:
|
||||
// block_offsets is the start of each block, potentially repeated
|
||||
// only need to store localR for used shapes
|
||||
Mesh::GeometryList elem_geoms(*fespace->GetMesh());
|
||||
|
||||
int geom_offsets[Geometry::NumGeom];
|
||||
{
|
||||
int size = 0;
|
||||
for (int i = 0; i < elem_geoms.Size(); ++i)
|
||||
{
|
||||
fespace->GetLocalDerefinementMatrices(elem_geoms[i],
|
||||
localR[elem_geoms[i]]);
|
||||
geom_offsets[elem_geoms[i]] = size;
|
||||
size += localR[elem_geoms[i]].TotalSize();
|
||||
}
|
||||
block_storage.SetSize(size);
|
||||
// copy blocks into block_storage
|
||||
auto bs_ptr = block_storage.HostWrite();
|
||||
for (int i = 0; i < elem_geoms.Size(); ++i)
|
||||
{
|
||||
std::copy(localR[elem_geoms[i]].Data(),
|
||||
localR[elem_geoms[i]].Data()
|
||||
+ localR[elem_geoms[i]].TotalSize(),
|
||||
bs_ptr);
|
||||
bs_ptr += localR[elem_geoms[i]].TotalSize();
|
||||
}
|
||||
}
|
||||
for (int k = 0; k < dtrans.embeddings.Size(); ++k)
|
||||
{
|
||||
const Embedding &emb = dtrans.embeddings[k];
|
||||
Geometry::Type geom =
|
||||
fespace->GetMesh()->GetElementBaseGeometry(emb.parent);
|
||||
|
||||
auto size = localR[geom].SizeI() * localR[geom].SizeJ();
|
||||
total_rows += localR[geom].SizeI();
|
||||
total_cols += localR[geom].SizeJ();
|
||||
// set block offsets and sizes
|
||||
block_offsets[k] = geom_offsets[geom] + size * emb.matrix;
|
||||
}
|
||||
}
|
||||
row_idcs.SetSize(total_rows);
|
||||
row_idcs.HostWrite();
|
||||
col_idcs.SetSize(total_cols);
|
||||
col_idcs.HostWrite();
|
||||
block_row_idcs_offsets.SetSize(dtrans.embeddings.Size() + 1);
|
||||
block_row_idcs_offsets.HostWrite();
|
||||
block_col_idcs_offsets.SetSize(dtrans.embeddings.Size() + 1);
|
||||
block_col_idcs_offsets.HostWrite();
|
||||
block_row_idcs_offsets[0] = 0;
|
||||
block_col_idcs_offsets[0] = 0;
|
||||
|
||||
// compute index information
|
||||
Array<int> dofs, old_dofs;
|
||||
max_rows = 1;
|
||||
|
||||
{
|
||||
Array<int> mark(fespace->GetNDofs());
|
||||
mark = 0;
|
||||
auto bs_ptr = block_storage.HostWrite();
|
||||
int ridx = 0;
|
||||
int cidx = 0;
|
||||
int num_marked = 0;
|
||||
for (int k = 0; k < dtrans.embeddings.Size(); k++)
|
||||
{
|
||||
const Embedding &emb = dtrans.embeddings[k];
|
||||
Geometry::Type geom =
|
||||
fespace->GetMesh()->GetElementBaseGeometry(emb.parent);
|
||||
|
||||
if (fespace->IsVariableOrder())
|
||||
{
|
||||
const FiniteElement *fe = fespace->GetFE(emb.parent);
|
||||
const DenseTensor &pmats = dtrans.point_matrices[geom];
|
||||
const int ldof = fe->GetDof();
|
||||
|
||||
IsoparametricTransformation isotr;
|
||||
isotr.SetIdentityTransformation(geom);
|
||||
|
||||
localRVO.SetSize(ldof, ldof);
|
||||
isotr.SetPointMat(pmats(emb.matrix));
|
||||
// Local restriction is size ldofxldof assuming that the parent
|
||||
// and child are of same polynomial order.
|
||||
fe->GetLocalRestriction(isotr, localRVO);
|
||||
// copy block
|
||||
auto size = localRVO.Height() * localRVO.Width();
|
||||
std::copy(localRVO.Data(), localRVO.Data() + size, bs_ptr);
|
||||
bs_ptr += size;
|
||||
}
|
||||
DenseMatrix &lR =
|
||||
fespace->IsVariableOrder() ? localRVO : localR[geom](emb.matrix);
|
||||
block_row_idcs_offsets[k + 1] =
|
||||
block_row_idcs_offsets[k] + lR.Height();
|
||||
block_col_idcs_offsets[k + 1] = block_col_idcs_offsets[k] + lR.Width();
|
||||
max_rows = std::max(lR.Height(), max_rows);
|
||||
// index information
|
||||
fespace->elem_dof->GetRow(emb.parent, dofs);
|
||||
old_elem_dof->GetRow(k, old_dofs);
|
||||
MFEM_VERIFY(old_dofs.Size() == dofs.Size(),
|
||||
"Parent and child must have same #dofs.");
|
||||
for (int i = 0; i < lR.Height(); ++i, ++ridx)
|
||||
{
|
||||
if (!std::isfinite(lR(i, 0)))
|
||||
{
|
||||
row_idcs[ridx] = INT_MAX;
|
||||
continue;
|
||||
}
|
||||
int r = dofs[i];
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
if (is_dg || !mark[m])
|
||||
{
|
||||
row_idcs[ridx] = r;
|
||||
mark[m] = 1;
|
||||
++num_marked;
|
||||
}
|
||||
else
|
||||
{
|
||||
row_idcs[ridx] = INT_MAX;
|
||||
}
|
||||
}
|
||||
for (int i = 0; i < lR.Width(); ++i, ++cidx)
|
||||
{
|
||||
col_idcs[cidx] = old_dofs[i];
|
||||
}
|
||||
}
|
||||
if (!is_dg && !fespace->IsVariableOrder())
|
||||
{
|
||||
MFEM_VERIFY(num_marked * fespace->GetVDim() == Height(),
|
||||
"internal error: not all rows were set.");
|
||||
}
|
||||
}
|
||||
// if not using GPU, set max_rows/max_cols to zero
|
||||
if (Device::Allows(Backend::DEVICE_MASK))
|
||||
{
|
||||
max_rows = std::min(max_rows, max_team_size);
|
||||
}
|
||||
else
|
||||
{
|
||||
max_rows = 1;
|
||||
}
|
||||
}
|
||||
|
||||
void DerefineMatrixOp::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
const bool is_dg = fespace->FEColl()->GetContType()
|
||||
== FiniteElementCollection::DISCONTINUOUS;
|
||||
// DG needs atomic summation
|
||||
MultKernel::Run(fespace->GetOrdering(), is_dg, *this, x, y);
|
||||
}
|
||||
|
||||
DerefineMatrixOp::Kernels::Kernels()
|
||||
{
|
||||
MultKernel::Specialization<Ordering::byNODES, false>::Add();
|
||||
MultKernel::Specialization<Ordering::byVDIM, false>::Add();
|
||||
MultKernel::Specialization<Ordering::byNODES, true>::Add();
|
||||
MultKernel::Specialization<Ordering::byVDIM, true>::Add();
|
||||
}
|
||||
|
||||
template <Ordering::Type Order, bool Atomic>
|
||||
DerefineMatrixOp::MultKernelType DerefineMatrixOp::MultKernel::Kernel()
|
||||
{
|
||||
return internal::DerefMultKernelImpl<Order, Atomic>;
|
||||
}
|
||||
|
||||
DerefineMatrixOp::MultKernelType
|
||||
DerefineMatrixOp::MultKernel::Fallback(Ordering::Type, bool)
|
||||
{
|
||||
MFEM_ABORT("invalid MultKernel parameters");
|
||||
}
|
||||
} // namespace mfem
|
||||
/// \endcond DO_NOT_DOCUMENT
|
||||
@@ -0,0 +1,65 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_DEREFMAT_OP
|
||||
#define MFEM_DEREFMAT_OP
|
||||
|
||||
#include "fespace.hpp"
|
||||
|
||||
#include "kernel_dispatch.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// \cond DO_NOT_DOCUMENT
|
||||
|
||||
struct DerefineMatrixOp : public Operator
|
||||
{
|
||||
FiniteElementSpace *fespace;
|
||||
/// offsets into block_storage
|
||||
Array<int> block_offsets;
|
||||
/// offsets into row_idcs
|
||||
Array<int> block_row_idcs_offsets;
|
||||
/// offsets into col_idcs
|
||||
Array<int> block_col_idcs_offsets;
|
||||
/// mapping for row dofs, INT_MAX indicates the block row should be ignored.
|
||||
/// negative means the row data should be negated.
|
||||
Array<int> row_idcs;
|
||||
/// mapping for col dofs, negative means the col data should be negated.
|
||||
Array<int> col_idcs;
|
||||
/// dense block matrices which can be reused to construct the full matrix
|
||||
/// operation. These are stored contiguously and blocks have no restrictions
|
||||
/// on shape (can be rectangle and differ from block to block).
|
||||
Vector block_storage;
|
||||
/// maximum height of any block in block_storage for GPU
|
||||
/// parallelization, or 1 for CPU runs.
|
||||
int max_rows;
|
||||
|
||||
using MultKernelType = void (*)(const DerefineMatrixOp &, const Vector &,
|
||||
Vector &);
|
||||
/// template args: ordering, atomic
|
||||
MFEM_REGISTER_KERNELS(MultKernel, MultKernelType, (Ordering::Type, bool));
|
||||
|
||||
struct Kernels
|
||||
{
|
||||
Kernels();
|
||||
};
|
||||
|
||||
void Mult(const Vector &x, Vector &y) const;
|
||||
|
||||
DerefineMatrixOp(FiniteElementSpace &fespace_, int old_ndofs,
|
||||
const Table *old_elem_dof, const Table *old_elem_fos);
|
||||
};
|
||||
|
||||
/// \endcond DO_NOT_DOCUMENT
|
||||
|
||||
} // namespace mfem
|
||||
#endif
|
||||
@@ -241,6 +241,7 @@ public:
|
||||
{
|
||||
MFEM_ASSERT(!action_callbacks.empty(), "no integrators have been set");
|
||||
prolongation(solutions, solutions_t, solutions_l);
|
||||
residual_l = 0.0;
|
||||
for (auto &action : action_callbacks)
|
||||
{
|
||||
action(solutions_l, parameters_l, residual_l);
|
||||
|
||||
+6
-6
@@ -327,8 +327,8 @@ void print_mpi_sync(const std::string& msg)
|
||||
// First gather string lengths
|
||||
size_t msg_len = msg.length();
|
||||
std::vector<size_t> lengths(nranks);
|
||||
MPI_Gather(&msg_len, 1, MPI_INT,
|
||||
lengths.data(), 1, MPI_INT,
|
||||
MPI_Gather(&msg_len, 1, MPITypeMap<size_t>::mpi_type,
|
||||
lengths.data(), 1, MPITypeMap<size_t>::mpi_type,
|
||||
0, MPI_COMM_WORLD);
|
||||
|
||||
if (myrank == 0)
|
||||
@@ -568,7 +568,7 @@ struct ThreadBlocks
|
||||
int z = 1;
|
||||
};
|
||||
|
||||
#if (defined(MFEM_USE_CUDA) || defined(MFEM_USE_HIP))
|
||||
#if defined(MFEM_USE_CUDA_OR_HIP)
|
||||
template <typename func_t>
|
||||
__global__ void forall_kernel_shmem(func_t f, int n)
|
||||
{
|
||||
@@ -591,7 +591,7 @@ void forall(func_t f,
|
||||
if (Device::Allows(Backend::CUDA_MASK) ||
|
||||
Device::Allows(Backend::HIP_MASK))
|
||||
{
|
||||
#if (defined(MFEM_USE_CUDA) || defined(MFEM_USE_HIP))
|
||||
#if defined(MFEM_USE_CUDA_OR_HIP)
|
||||
// int gridsize = (N + Z - 1) / Z;
|
||||
int num_bytes = num_shmem * sizeof(decltype(shmem));
|
||||
dim3 block_size(blocks.x, blocks.y, blocks.z);
|
||||
@@ -987,7 +987,7 @@ get_restriction_transpose(
|
||||
{
|
||||
auto RT = [=](const Vector &v_e, Vector &v_l)
|
||||
{
|
||||
v_l = v_e;
|
||||
v_l += v_e;
|
||||
};
|
||||
return std::make_tuple(RT, 1);
|
||||
}
|
||||
@@ -996,7 +996,7 @@ get_restriction_transpose(
|
||||
const Operator *R = get_restriction<entity_t>(f, o);
|
||||
std::function<void(const Vector&, Vector&)> RT = [=](const Vector &x, Vector &y)
|
||||
{
|
||||
R->MultTranspose(x, y);
|
||||
R->AddMultTranspose(x, y);
|
||||
};
|
||||
return std::make_tuple(RT, R->Height());
|
||||
}
|
||||
|
||||
@@ -0,0 +1,249 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_FES_KERNELS_HPP
|
||||
#define MFEM_FES_KERNELS_HPP
|
||||
|
||||
#include "../general/forall.hpp"
|
||||
|
||||
#include <climits>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
/// \cond DO_NOT_DOCUMENT
|
||||
namespace internal
|
||||
{
|
||||
|
||||
///
|
||||
/// Implements matrix-vector multiply $y = A x$ for a sparse matrix composed of
|
||||
/// a sum of smaller dense blocks. There is additional permutation/sign
|
||||
/// information associated with each block. The base class only implements
|
||||
/// helper routines such as computing block widths, index into x, index into y,
|
||||
/// and column in A given sub-block information.
|
||||
/// @sa DerefineMatrixOpMultFunctor
|
||||
///
|
||||
/// @tparam Order vdim ordering for x and y. Note that for Diag = false this is
|
||||
/// ignored for x as x has a special interleaved order.
|
||||
/// @tparam Base used for the curious recurring template pattern (CRTP) so the
|
||||
/// base class can access child class fields without virtual functions
|
||||
/// @tparam Diag true if this corresponds to the diagonal block (coarse element
|
||||
/// and fine element are on our rank), false otherwise (coarse element is on our
|
||||
/// rank, fine element is on a different rank).
|
||||
///
|
||||
template <Ordering::Type Order, class Base, bool Diag = true>
|
||||
struct DerefineMatrixOpFunctorBase;
|
||||
|
||||
template <class Base>
|
||||
struct DerefineMatrixOpFunctorBase<Ordering::byNODES, Base, true>
|
||||
{
|
||||
/// block column indices offsets
|
||||
const int *bcptr;
|
||||
/// column indices
|
||||
const int *cptr;
|
||||
|
||||
int MFEM_HOST_DEVICE BlockWidth(int k) const
|
||||
{
|
||||
return bcptr[k + 1] - bcptr[k];
|
||||
}
|
||||
|
||||
void MFEM_HOST_DEVICE Col(int j, int k, int &col, int &sign) const
|
||||
{
|
||||
col = cptr[bcptr[k] + j];
|
||||
if (col < 0)
|
||||
{
|
||||
col = -1 - col;
|
||||
sign = -sign;
|
||||
}
|
||||
}
|
||||
|
||||
int MFEM_HOST_DEVICE IndexX(int col, int vdim, int) const
|
||||
{
|
||||
return col + vdim * static_cast<const Base *>(this)->width;
|
||||
}
|
||||
int MFEM_HOST_DEVICE IndexY(int row, int vdim) const
|
||||
{
|
||||
return row + vdim * static_cast<const Base *>(this)->height;
|
||||
}
|
||||
};
|
||||
|
||||
template <class Base>
|
||||
struct DerefineMatrixOpFunctorBase<Ordering::byVDIM, Base, true>
|
||||
{
|
||||
/// block column indices offsets
|
||||
const int *bcptr;
|
||||
/// column indices
|
||||
const int *cptr;
|
||||
|
||||
int MFEM_HOST_DEVICE BlockWidth(int k) const
|
||||
{
|
||||
return bcptr[k + 1] - bcptr[k];
|
||||
}
|
||||
|
||||
void MFEM_HOST_DEVICE Col(int j, int k, int &col, int &sign) const
|
||||
{
|
||||
col = cptr[bcptr[k] + j];
|
||||
if (col < 0)
|
||||
{
|
||||
col = -1 - col;
|
||||
sign = -sign;
|
||||
}
|
||||
}
|
||||
|
||||
int MFEM_HOST_DEVICE IndexX(int col, int vdim, int) const
|
||||
{
|
||||
return vdim + col * static_cast<const Base *>(this)->vdims;
|
||||
}
|
||||
int MFEM_HOST_DEVICE IndexY(int row, int vdim) const
|
||||
{
|
||||
return vdim + row * static_cast<const Base *>(this)->vdims;
|
||||
}
|
||||
};
|
||||
|
||||
template <class Base>
|
||||
struct DerefineMatrixOpFunctorBase<Ordering::byNODES, Base, false>
|
||||
{
|
||||
/// receive segment offsets
|
||||
const int *segptr;
|
||||
/// receive segment index
|
||||
const int *rsptr;
|
||||
/// off-diagonal block column offsets
|
||||
const int *coptr;
|
||||
/// off-diagonal block widths
|
||||
const int *bwptr;
|
||||
|
||||
int MFEM_HOST_DEVICE BlockWidth(int k) const { return bwptr[k]; }
|
||||
|
||||
void MFEM_HOST_DEVICE Col(int j, int k, int &col, int &sign) const
|
||||
{
|
||||
col = coptr[k] + j;
|
||||
}
|
||||
|
||||
int MFEM_HOST_DEVICE IndexX(int col, int vdim, int k) const
|
||||
{
|
||||
int tmp = rsptr[k];
|
||||
int segwidth = segptr[tmp + 1] - segptr[tmp];
|
||||
return segptr[tmp] * static_cast<const Base *>(this)->vdims + col +
|
||||
vdim * segwidth;
|
||||
}
|
||||
int MFEM_HOST_DEVICE IndexY(int row, int vdim) const
|
||||
{
|
||||
return row + vdim * static_cast<const Base *>(this)->height;
|
||||
}
|
||||
};
|
||||
|
||||
template <class Base>
|
||||
struct DerefineMatrixOpFunctorBase<Ordering::byVDIM, Base, false>
|
||||
{
|
||||
/// receive segment offsets
|
||||
const int *segptr;
|
||||
/// receive segment index
|
||||
const int *rsptr;
|
||||
/// off-diagonal block column offsets
|
||||
const int *coptr;
|
||||
/// off-diagonal block widths
|
||||
const int *bwptr;
|
||||
|
||||
int MFEM_HOST_DEVICE BlockWidth(int k) const { return bwptr[k]; }
|
||||
|
||||
void MFEM_HOST_DEVICE Col(int j, int k, int &col, int &sign) const
|
||||
{
|
||||
col = coptr[k] + j;
|
||||
}
|
||||
|
||||
int MFEM_HOST_DEVICE IndexX(int col, int vdim, int k) const
|
||||
{
|
||||
int tmp = rsptr[k];
|
||||
int segwidth = segptr[tmp + 1] - segptr[tmp];
|
||||
return segptr[tmp] * static_cast<const Base *>(this)->vdims + col +
|
||||
vdim * segwidth;
|
||||
}
|
||||
int MFEM_HOST_DEVICE IndexY(int row, int vdim) const
|
||||
{
|
||||
return vdim + row * static_cast<const Base *>(this)->vdims;
|
||||
}
|
||||
};
|
||||
|
||||
/// internally used to implement the derefinement operator Mult diagonal
|
||||
/// block
|
||||
template <Ordering::Type Order, bool Atomic, bool Diag = true>
|
||||
struct DerefineMatrixOpMultFunctor
|
||||
: public DerefineMatrixOpFunctorBase<
|
||||
Order, DerefineMatrixOpMultFunctor<Order, Atomic, Diag>, Diag>
|
||||
{
|
||||
const real_t *xptr;
|
||||
real_t *yptr;
|
||||
/// block storage
|
||||
const real_t *bsptr;
|
||||
/// block offsets
|
||||
const int *boptr;
|
||||
/// block row index offsets
|
||||
const int *brptr;
|
||||
/// row indices
|
||||
const int *rptr;
|
||||
|
||||
// number of blocks
|
||||
int nblocks;
|
||||
// number of components
|
||||
int vdims;
|
||||
/// overall operator height (for vdim = 1)
|
||||
int height;
|
||||
/// overall operator width (for vdim = 1)
|
||||
int width;
|
||||
void MFEM_HOST_DEVICE operator()(int kidx) const
|
||||
{
|
||||
int k = kidx % nblocks;
|
||||
int vdim = kidx / nblocks;
|
||||
|
||||
int block_height = brptr[k + 1] - brptr[k];
|
||||
int block_width = this->BlockWidth(k);
|
||||
MFEM_FOREACH_THREAD(i, x, block_height)
|
||||
{
|
||||
int row = rptr[brptr[k] + i];
|
||||
int rsign = 1;
|
||||
if (row < 0)
|
||||
{
|
||||
row = -1 - row;
|
||||
rsign = -1;
|
||||
}
|
||||
if (row < INT_MAX)
|
||||
{
|
||||
// row not marked as unused
|
||||
real_t sum = 0;
|
||||
for (int j = 0; j < block_width; ++j)
|
||||
{
|
||||
int col, sign = rsign;
|
||||
this->Col(j, k, col, sign);
|
||||
sum += sign * bsptr[boptr[k] + i + j * block_height] *
|
||||
xptr[this->IndexX(col, vdim, k)];
|
||||
}
|
||||
#if defined(__CUDA_ARCH__) or defined(__HIP_DEVICE_COMPILE__)
|
||||
if (Atomic)
|
||||
{
|
||||
atomicAdd(yptr + this->IndexY(row, vdim), sum);
|
||||
}
|
||||
else
|
||||
#endif
|
||||
{
|
||||
yptr[this->IndexY(row, vdim)] += sum;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/// N is the max block row size (doesn't have to be a power of 2)
|
||||
void Run(int N) const { forall_2D(nblocks * vdims, N, 1, *this); }
|
||||
};
|
||||
|
||||
} // namespace internal
|
||||
/// \endcond DO_NOT_DOCUMENT
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
+21
-7
@@ -17,6 +17,9 @@
|
||||
#include "fem.hpp"
|
||||
#include "ceed/interface/util.hpp"
|
||||
|
||||
#include "derefmat_op.hpp"
|
||||
|
||||
#include <algorithm>
|
||||
#include <cmath>
|
||||
#include <cstdarg>
|
||||
|
||||
@@ -24,9 +27,9 @@ using namespace std;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
template <> void Ordering::
|
||||
DofsToVDofs<Ordering::byNODES>(int ndofs, int vdim, Array<int> &dofs)
|
||||
template <>
|
||||
void Ordering::DofsToVDofs<Ordering::byNODES>(int ndofs, int vdim,
|
||||
Array<int> &dofs)
|
||||
{
|
||||
// static method
|
||||
int size = dofs.Size();
|
||||
@@ -40,8 +43,9 @@ DofsToVDofs<Ordering::byNODES>(int ndofs, int vdim, Array<int> &dofs)
|
||||
}
|
||||
}
|
||||
|
||||
template <> void Ordering::
|
||||
DofsToVDofs<Ordering::byVDIM>(int ndofs, int vdim, Array<int> &dofs)
|
||||
template <>
|
||||
void Ordering::DofsToVDofs<Ordering::byVDIM>(int ndofs, int vdim,
|
||||
Array<int> &dofs)
|
||||
{
|
||||
// static method
|
||||
int size = dofs.Size();
|
||||
@@ -55,7 +59,6 @@ DofsToVDofs<Ordering::byVDIM>(int ndofs, int vdim, Array<int> &dofs)
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
FiniteElementSpace::FiniteElementSpace()
|
||||
: mesh(NULL), fec(NULL), vdim(0), ordering(Ordering::byNODES),
|
||||
ndofs(0), nvdofs(0), nedofs(0), nfdofs(0), nbdofs(0),
|
||||
@@ -98,7 +101,10 @@ FiniteElementSpace::FiniteElementSpace(const FiniteElementSpace &orig,
|
||||
FiniteElementSpace::FiniteElementSpace(Mesh *mesh,
|
||||
const FiniteElementCollection *fec,
|
||||
int vdim, int ordering)
|
||||
{ Constructor(mesh, NULL, fec, vdim, ordering); }
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
Constructor(mesh, NULL, fec, vdim, ordering);
|
||||
}
|
||||
|
||||
FiniteElementSpace::FiniteElementSpace(Mesh *mesh, NURBSExtension *ext,
|
||||
const FiniteElementCollection *fec,
|
||||
@@ -390,6 +396,8 @@ void FiniteElementSpace::BuildElementToDofTable() const
|
||||
{
|
||||
if (elem_dof) { return; }
|
||||
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
// TODO: can we call GetElementDofs only once per element?
|
||||
Table *el_dof = new Table;
|
||||
Table *el_fos = (mesh->Dimension() > 2) ? (new Table) : NULL;
|
||||
@@ -2745,6 +2753,8 @@ void FiniteElementSpace::BuildNURBSFaceToDofTable() const
|
||||
|
||||
void FiniteElementSpace::Construct()
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
// This method should be used only for non-NURBS spaces.
|
||||
MFEM_VERIFY(!NURBSext, "internal error");
|
||||
|
||||
@@ -4244,7 +4254,11 @@ void FiniteElementSpace::Update(bool want_transform)
|
||||
case Mesh::DEREFINE:
|
||||
{
|
||||
BuildConformingInterpolation();
|
||||
#if 0
|
||||
Th.Reset(DerefinementMatrix(old_ndofs, old_elem_dof, old_elem_fos));
|
||||
#else
|
||||
Th.Reset(new DerefineMatrixOp(*this, old_ndofs, old_elem_dof, old_elem_fos));
|
||||
#endif
|
||||
if (IsVariableOrder())
|
||||
{
|
||||
if (cP && cR_hp)
|
||||
|
||||
+2
-1
@@ -113,7 +113,7 @@ class QuadratureSpace;
|
||||
class QuadratureInterpolator;
|
||||
class FaceQuadratureInterpolator;
|
||||
class PRefinementTransferOperator;
|
||||
|
||||
struct DerefineMatrixOp;
|
||||
|
||||
/** @brief Class FiniteElementSpace - responsible for providing FEM view of the
|
||||
mesh, mainly managing the set of degrees of freedom.
|
||||
@@ -246,6 +246,7 @@ class FiniteElementSpace
|
||||
friend class PRefinementTransferOperator;
|
||||
friend void Mesh::Swap(Mesh &, bool);
|
||||
friend class LORBase;
|
||||
friend struct DerefineMatrixOp;
|
||||
|
||||
protected:
|
||||
/// The mesh that FE space lives on (not owned).
|
||||
|
||||
+120
-1
@@ -19,6 +19,7 @@
|
||||
#include "../mesh/nurbs.hpp"
|
||||
#include "../mesh/vtkhdf.hpp"
|
||||
#include "../general/text.hpp"
|
||||
#include "../general/reducers.hpp"
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
#include "pfespace.hpp"
|
||||
@@ -3326,8 +3327,126 @@ real_t GridFunction::ComputeLpError(const real_t p, Coefficient &exsol,
|
||||
const IntegrationRule *irs[],
|
||||
const Array<int> *elems) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
MFEM_VERIFY(fes->GetVDim() == 1, "invalid vector dimension!");
|
||||
|
||||
real_t error = 0.0;
|
||||
const FiniteElement *fe;
|
||||
|
||||
bool device_eval = true;
|
||||
// TODO: check for cases that are not supported on device:
|
||||
// * mixed meshes
|
||||
// * meshes with non-tensor-product elements can have negative weights
|
||||
// * variable orders
|
||||
// * weight is not NULL
|
||||
// * elems is not NULL
|
||||
// * map type is not VALUE
|
||||
// * ...
|
||||
Mesh *mesh = fes->GetMesh();
|
||||
const FiniteElement *fe = fes->GetTypicalFE();
|
||||
if (mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
(mesh->Dimension() > 1 && mesh->MeshGenerator() != 2) ||
|
||||
fes->IsVariableOrder() ||
|
||||
weight != nullptr ||
|
||||
elems != nullptr ||
|
||||
fe->GetMapType() != FiniteElement::MapType::VALUE)
|
||||
{
|
||||
device_eval = false;
|
||||
}
|
||||
if (device_eval)
|
||||
{
|
||||
Geometry::Type geom = mesh->GetTypicalElementGeometry();
|
||||
const IntegrationRule *ir_p;
|
||||
if (irs)
|
||||
{
|
||||
ir_p = irs[geom];
|
||||
}
|
||||
else
|
||||
{
|
||||
int intorder = 2*fe->GetOrder() + 3; // <----------
|
||||
ir_p = &(IntRules.Get(geom, intorder));
|
||||
}
|
||||
const IntegrationRule &ir = *ir_p;
|
||||
QuadratureSpace qs(*mesh, ir);
|
||||
CoefficientVector coeff(exsol, qs, CoefficientStorage::FULL);
|
||||
|
||||
const QVectorLayout ql = QVectorLayout::byNODES;
|
||||
const MemoryType d_mt = MemoryType::DEFAULT;
|
||||
Vector q_vals;
|
||||
// TODO: make this a method
|
||||
{
|
||||
// const FiniteElement *fe = fes->GetTypicalFE();
|
||||
const int vdim = fes->GetVDim();
|
||||
const int NE = fes->GetNE();
|
||||
const int ND = fe->GetDof();
|
||||
const int NQ = ir.GetNPoints();
|
||||
MemoryType my_d_mt = (d_mt != MemoryType::DEFAULT) ? d_mt :
|
||||
Device::GetDeviceMemoryType();
|
||||
// byNODES : NQPT x VDIM x NE
|
||||
// byVDIM : VDIM x NQPT x NE
|
||||
q_vals.SetSize(vdim*NQ*NE, my_d_mt);
|
||||
const QuadratureInterpolator &qi = *fes->GetQuadratureInterpolator(ir);
|
||||
qi.SetOutputLayout(ql);
|
||||
const bool use_tensor_products = UsesTensorBasis(*fes);
|
||||
qi.DisableTensorProducts(!use_tensor_products);
|
||||
const ElementDofOrdering e_ordering =
|
||||
use_tensor_products ?
|
||||
ElementDofOrdering::LEXICOGRAPHIC :
|
||||
ElementDofOrdering::NATIVE;
|
||||
const Operator *elem_restr = fes->GetElementRestriction(e_ordering);
|
||||
if (fe->GetMapType() == FiniteElement::MapType::INTEGRAL)
|
||||
{
|
||||
// Pre-compute the geometric factors in order to set the desired
|
||||
// MemoryType they use:
|
||||
fes->GetMesh()->GetGeometricFactors(
|
||||
ir, GeometricFactors::DETERMINANTS, my_d_mt);
|
||||
}
|
||||
if (elem_restr)
|
||||
{
|
||||
Vector f_e(vdim*ND*NE, my_d_mt);
|
||||
elem_restr->Mult(*this, f_e);
|
||||
qi.PhysValues(f_e, q_vals);
|
||||
}
|
||||
else
|
||||
{
|
||||
qi.PhysValues(*this, q_vals);
|
||||
}
|
||||
}
|
||||
|
||||
const real_t *exact_d = coeff.Read();
|
||||
const real_t *gridf_d = q_vals.Read();
|
||||
// FIXME: reuse the workspace vector from vector.cpp?
|
||||
static Array<real_t> workspace;
|
||||
if (p < infinity())
|
||||
{
|
||||
MemoryType my_d_mt = (d_mt != MemoryType::DEFAULT) ? d_mt :
|
||||
Device::GetDeviceMemoryType();
|
||||
const GeometricFactors *geom_factors =
|
||||
fes->GetMesh()->GetGeometricFactors(
|
||||
ir, GeometricFactors::DETERMINANTS, my_d_mt);
|
||||
const real_t *detJ_d = geom_factors->detJ.Read();
|
||||
const real_t *w_d = ir.GetWeights().Read();
|
||||
const int NQ = ir.GetNPoints();
|
||||
mfem::reduce(q_vals.Size(), error,
|
||||
[=] MFEM_HOST_DEVICE(int i, real_t &r)
|
||||
{
|
||||
const real_t diff = fabs(exact_d[i] - gridf_d[i]);
|
||||
r += w_d[i%NQ] * detJ_d[i] * pow(diff, p);
|
||||
}, SumReducer<real_t> {}, true, workspace);
|
||||
error = pow(error, 1./p);
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem::reduce(q_vals.Size(), error,
|
||||
[=] MFEM_HOST_DEVICE(int i, real_t &r)
|
||||
{
|
||||
const real_t diff = fabs(exact_d[i] - gridf_d[i]);
|
||||
r = fmax(r, diff);
|
||||
}, MaxReducer<real_t> {}, true, workspace);
|
||||
}
|
||||
return error;
|
||||
}
|
||||
|
||||
ElementTransformation *T;
|
||||
Vector vals;
|
||||
|
||||
|
||||
@@ -161,7 +161,8 @@ static void EADiffusionAssemble3D(const int NE,
|
||||
auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
auto G = Reshape(g.Read(), Q1D, D1D);
|
||||
auto D = Reshape(padata.Read(), Q1D, Q1D, Q1D, 6, NE);
|
||||
auto A = Reshape(eadata.ReadWrite(), D1D, D1D, D1D, D1D, D1D, D1D, NE);
|
||||
auto A = Reshape(add ? eadata.ReadWrite() : eadata.Write(),
|
||||
D1D, D1D, D1D, D1D, D1D, D1D, NE);
|
||||
mfem::forall_3D(NE, D1D, D1D, D1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
@@ -246,58 +247,60 @@ void DiffusionIntegrator::AssembleEA(const FiniteElementSpace &fes,
|
||||
Vector &ea_data,
|
||||
const bool add)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
AssemblePA(fes);
|
||||
ne = fes.GetMesh()->GetNE();
|
||||
const Array<real_t> &B = maps->B;
|
||||
const Array<real_t> &G = maps->G;
|
||||
decltype(&EADiffusionAssemble1D<>) kernel = nullptr;
|
||||
if (dim == 1)
|
||||
{
|
||||
switch ((dofs1D << 4 ) | quad1D)
|
||||
{
|
||||
case 0x22: return EADiffusionAssemble1D<2,2>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x33: return EADiffusionAssemble1D<3,3>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x44: return EADiffusionAssemble1D<4,4>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x55: return EADiffusionAssemble1D<5,5>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x66: return EADiffusionAssemble1D<6,6>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x77: return EADiffusionAssemble1D<7,7>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x88: return EADiffusionAssemble1D<8,8>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x99: return EADiffusionAssemble1D<9,9>(ne,B,G,pa_data,ea_data,add);
|
||||
default: return EADiffusionAssemble1D(ne,B,G,pa_data,ea_data,add,
|
||||
dofs1D,quad1D);
|
||||
case 0x22: kernel = EADiffusionAssemble1D<2,2>;
|
||||
case 0x33: kernel = EADiffusionAssemble1D<3,3>;
|
||||
case 0x44: kernel = EADiffusionAssemble1D<4,4>;
|
||||
case 0x55: kernel = EADiffusionAssemble1D<5,5>;
|
||||
case 0x66: kernel = EADiffusionAssemble1D<6,6>;
|
||||
case 0x77: kernel = EADiffusionAssemble1D<7,7>;
|
||||
case 0x88: kernel = EADiffusionAssemble1D<8,8>;
|
||||
case 0x99: kernel = EADiffusionAssemble1D<9,9>;
|
||||
default: kernel = EADiffusionAssemble1D<>;
|
||||
}
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
switch ((dofs1D << 4 ) | quad1D)
|
||||
{
|
||||
case 0x22: return EADiffusionAssemble2D<2,2>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x33: return EADiffusionAssemble2D<3,3>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x44: return EADiffusionAssemble2D<4,4>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x55: return EADiffusionAssemble2D<5,5>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x66: return EADiffusionAssemble2D<6,6>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x77: return EADiffusionAssemble2D<7,7>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x88: return EADiffusionAssemble2D<8,8>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x99: return EADiffusionAssemble2D<9,9>(ne,B,G,pa_data,ea_data,add);
|
||||
default: return EADiffusionAssemble2D(ne,B,G,pa_data,ea_data,add,
|
||||
dofs1D,quad1D);
|
||||
case 0x22: kernel = EADiffusionAssemble2D<2,2>;
|
||||
case 0x33: kernel = EADiffusionAssemble2D<3,3>;
|
||||
case 0x44: kernel = EADiffusionAssemble2D<4,4>;
|
||||
case 0x55: kernel = EADiffusionAssemble2D<5,5>;
|
||||
case 0x66: kernel = EADiffusionAssemble2D<6,6>;
|
||||
case 0x77: kernel = EADiffusionAssemble2D<7,7>;
|
||||
case 0x88: kernel = EADiffusionAssemble2D<8,8>;
|
||||
case 0x99: kernel = EADiffusionAssemble2D<9,9>;
|
||||
default: kernel = EADiffusionAssemble2D<>;
|
||||
}
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch ((dofs1D << 4 ) | quad1D)
|
||||
{
|
||||
case 0x23: return EADiffusionAssemble3D<2,3>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x34: return EADiffusionAssemble3D<3,4>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x45: return EADiffusionAssemble3D<4,5>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x56: return EADiffusionAssemble3D<5,6>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x67: return EADiffusionAssemble3D<6,7>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x78: return EADiffusionAssemble3D<7,8>(ne,B,G,pa_data,ea_data,add);
|
||||
case 0x89: return EADiffusionAssemble3D<8,9>(ne,B,G,pa_data,ea_data,add);
|
||||
default: return EADiffusionAssemble3D(ne,B,G,pa_data,ea_data,add,
|
||||
dofs1D,quad1D);
|
||||
case 0x23: kernel = EADiffusionAssemble3D<2,3>;
|
||||
case 0x34: kernel = EADiffusionAssemble3D<3,4>;
|
||||
case 0x45: kernel = EADiffusionAssemble3D<4,5>;
|
||||
case 0x56: kernel = EADiffusionAssemble3D<5,6>;
|
||||
case 0x67: kernel = EADiffusionAssemble3D<6,7>;
|
||||
case 0x78: kernel = EADiffusionAssemble3D<7,8>;
|
||||
case 0x89: kernel = EADiffusionAssemble3D<8,9>;
|
||||
default: kernel = EADiffusionAssemble3D<>;
|
||||
}
|
||||
}
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
MFEM_VERIFY(kernel != nullptr, "Unknown kernel.");
|
||||
kernel(ne,B,G,pa_data,ea_data,add,dofs1D,quad1D);
|
||||
// Free the PA data:
|
||||
pa_data.Destroy();
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@@ -39,6 +39,8 @@ void DiffusionIntegrator::AssembleDiagonalPA(Vector &diag)
|
||||
// PA Diffusion Apply kernel
|
||||
void DiffusionIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
ceedOp->AddMult(x, y);
|
||||
@@ -88,6 +90,8 @@ void DiffusionIntegrator::AddMultTransposePA(const Vector &x, Vector &y) const
|
||||
|
||||
void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
|
||||
Device::GetDeviceMemoryType() : pa_mt;
|
||||
// Assuming the same element type
|
||||
|
||||
@@ -23,6 +23,8 @@ namespace mfem
|
||||
|
||||
void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
|
||||
Device::GetDeviceMemoryType() : pa_mt;
|
||||
|
||||
@@ -59,26 +61,23 @@ void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
|
||||
|
||||
const int NE = ne;
|
||||
const int Q1D = quad1D;
|
||||
const int NQ = static_cast<int>(std::pow(Q1D, dim));
|
||||
const bool const_c = coeff.Size() == 1;
|
||||
const bool by_val = map_type == FiniteElement::VALUE;
|
||||
const auto W = Reshape(ir->GetWeights().Read(), NQ);
|
||||
const auto J = Reshape(geom->detJ.Read(), NQ, NE);
|
||||
const auto C = const_c ? Reshape(coeff.Read(), 1, 1) :
|
||||
Reshape(coeff.Read(), NQ,NE);
|
||||
auto v = Reshape(pa_data.Write(), NQ, NE);
|
||||
mfem::forall_2D(NE, NQ, 1, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(i, x, NQ)
|
||||
const int NE = ne;
|
||||
const int NQ = nq;
|
||||
const bool const_c = coeff.Size() == 1;
|
||||
const bool by_val = map_type == FiniteElement::VALUE;
|
||||
const auto W = Reshape(ir->GetWeights().Read(), NQ);
|
||||
const auto J = Reshape(geom->detJ.Read(), NQ, NE);
|
||||
const auto C =
|
||||
const_c ? Reshape(coeff.Read(), 1, 1) : Reshape(coeff.Read(), NQ, NE);
|
||||
auto v = Reshape(pa_data.Write(), NQ, NE);
|
||||
mfem::forall(NQ, NE, [=] MFEM_HOST_DEVICE(int q, int e)
|
||||
{
|
||||
const real_t detJ = J(i,e);
|
||||
const real_t coeff = const_c ? C(0,0) : C(i,e);
|
||||
v(i,e) = W(i) * coeff * (by_val ? detJ : 1.0/detJ);
|
||||
}
|
||||
});
|
||||
const real_t detJ = J(q, e);
|
||||
const real_t coeff = const_c ? C(0, 0) : C(q, e);
|
||||
v(q, e) = W(q) * coeff * (by_val ? detJ : 1.0 / detJ);
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
void MassIntegrator::AssemblePABoundary(const FiniteElementSpace &fes)
|
||||
@@ -109,50 +108,22 @@ void MassIntegrator::AssemblePABoundary(const FiniteElementSpace &fes)
|
||||
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
|
||||
|
||||
const int NE = ne;
|
||||
const int Q1D = quad1D;
|
||||
const int NQ = nq;
|
||||
const bool const_c = coeff.Size() == 1;
|
||||
const bool by_val = map_type == FiniteElement::VALUE;
|
||||
if (dim==1)
|
||||
{
|
||||
const auto W = Reshape(ir->GetWeights().Read(), Q1D);
|
||||
const auto J = Reshape(face_geom->detJ.Read(), Q1D, NE);
|
||||
const auto C = const_c ? Reshape(coeff.Read(), 1, 1) :
|
||||
Reshape(coeff.Read(), Q1D, NE);
|
||||
auto v = Reshape(pa_data.Write(), Q1D, NE);
|
||||
mfem::forall_2D(NE, Q1D, 1, [=] MFEM_HOST_DEVICE (int e)
|
||||
const auto W = Reshape(ir->GetWeights().Read(), NQ);
|
||||
const auto J = Reshape(face_geom->detJ.Read(), NQ, NE);
|
||||
const auto C = const_c ? Reshape(coeff.Read(), 1, 1)
|
||||
: Reshape(coeff.Read(), NQ, NE);
|
||||
auto v = Reshape(pa_data.Write(), NQ, NE);
|
||||
mfem::forall(NQ, NE, [=] MFEM_HOST_DEVICE(int q, int e)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
const real_t detJ = J(qx,e);
|
||||
const real_t coeff = const_c ? C(0,0) : C(qx,e);
|
||||
v(qx,e) = W(qx) * coeff * (by_val ? detJ : 1.0/detJ);
|
||||
}
|
||||
const real_t detJ = J(q, e);
|
||||
const real_t coeff = const_c ? C(0, 0) : C(q, e);
|
||||
v(q, e) = W(q) * coeff * (by_val ? detJ : 1.0 / detJ);
|
||||
});
|
||||
}
|
||||
else if (dim==2)
|
||||
{
|
||||
const auto W = Reshape(ir->GetWeights().Read(), Q1D,Q1D);
|
||||
const auto J = Reshape(face_geom->detJ.Read(), Q1D,Q1D,NE);
|
||||
const auto C = const_c ? Reshape(coeff.Read(), 1,1,1) :
|
||||
Reshape(coeff.Read(), Q1D,Q1D,NE);
|
||||
auto v = Reshape(pa_data.Write(), Q1D,Q1D, NE);
|
||||
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
const real_t detJ = J(qx,qy,e);
|
||||
const real_t coeff = const_c ? C(0,0,0) : C(qx,qy,e);
|
||||
v(qx,qy,e) = W(qx,qy) * coeff * (by_val ? detJ : 1.0/detJ);
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Not supported.");
|
||||
}
|
||||
}
|
||||
|
||||
void MassIntegrator::AssembleDiagonalPA(Vector &diag)
|
||||
@@ -170,6 +141,8 @@ void MassIntegrator::AssembleDiagonalPA(Vector &diag)
|
||||
|
||||
void MassIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
ceedOp->AddMult(x, y);
|
||||
|
||||
@@ -242,6 +242,8 @@ void DomainLFIntegrator::AssembleDevice(const FiniteElementSpace &fes,
|
||||
const Array<int> &markers,
|
||||
Vector &b)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
const FiniteElement &fe = *fes.GetTypicalFE();
|
||||
const int qorder = oa * fe.GetOrder() + ob;
|
||||
const Geometry::Type gtype = fe.GetGeomType();
|
||||
|
||||
+29
-29
@@ -346,13 +346,13 @@ private:
|
||||
template<typename T>
|
||||
T operator() (const blitz::TinyVector<T,3>& x) const
|
||||
{
|
||||
int el_order=el->GetOrder();
|
||||
T u1[el_order+1];
|
||||
T u2[el_order+1];
|
||||
T u3[el_order+1];
|
||||
TmplPoly_1D::CalcBernstein(el_order, x[0], u1);
|
||||
TmplPoly_1D::CalcBernstein(el_order, x[1], u2);
|
||||
TmplPoly_1D::CalcBernstein(el_order, x[2], u3);
|
||||
const int el_order = el->GetOrder();
|
||||
std::vector<T> u1(el_order+1);
|
||||
std::vector<T> u2(el_order+1);
|
||||
std::vector<T> u3(el_order+1);
|
||||
TmplPoly_1D::CalcBernstein(el_order, x[0], u1.data());
|
||||
TmplPoly_1D::CalcBernstein(el_order, x[1], u2.data());
|
||||
TmplPoly_1D::CalcBernstein(el_order, x[2], u3.data());
|
||||
|
||||
const Array<int>& dof_map=el->GetDofMap();
|
||||
|
||||
@@ -370,17 +370,17 @@ private:
|
||||
template<typename T>
|
||||
blitz::TinyVector<T,3> grad(const blitz::TinyVector<T,3>& x) const
|
||||
{
|
||||
int el_order=el->GetOrder();
|
||||
T u1[el_order+1];
|
||||
T u2[el_order+1];
|
||||
T u3[el_order+1];
|
||||
T d1[el_order+1];
|
||||
T d2[el_order+1];
|
||||
T d3[el_order+1];
|
||||
const int el_order = el->GetOrder();
|
||||
std::vector<T> u1(el_order+1);
|
||||
std::vector<T> u2(el_order+1);
|
||||
std::vector<T> u3(el_order+1);
|
||||
std::vector<T> d1(el_order+1);
|
||||
std::vector<T> d2(el_order+1);
|
||||
std::vector<T> d3(el_order+1);
|
||||
|
||||
TmplPoly_1D::CalcBernstein(el_order,x[0], u1, d1);
|
||||
TmplPoly_1D::CalcBernstein(el_order,x[1], u2, d2);
|
||||
TmplPoly_1D::CalcBernstein(el_order,x[2], u3, d3);
|
||||
TmplPoly_1D::CalcBernstein(el_order,x[0], u1.data(), d1.data());
|
||||
TmplPoly_1D::CalcBernstein(el_order,x[1], u2.data(), d2.data());
|
||||
TmplPoly_1D::CalcBernstein(el_order,x[2], u3.data(), d3.data());
|
||||
|
||||
blitz::TinyVector<T,3> res(T(0.0),T(0.0),T(0.0));
|
||||
|
||||
@@ -415,11 +415,11 @@ private:
|
||||
template<typename T>
|
||||
T operator() (const blitz::TinyVector<T,2>& x) const
|
||||
{
|
||||
int el_order=el->GetOrder();
|
||||
T u1[el_order+1];
|
||||
T u2[el_order+1];
|
||||
TmplPoly_1D::CalcBernstein(el_order, x[0], u1);
|
||||
TmplPoly_1D::CalcBernstein(el_order, x[1], u2);
|
||||
const int el_order = el->GetOrder();
|
||||
std::vector<T> u1(el_order+1);
|
||||
std::vector<T> u2(el_order+1);
|
||||
TmplPoly_1D::CalcBernstein(el_order, x[0], u1.data());
|
||||
TmplPoly_1D::CalcBernstein(el_order, x[1], u2.data());
|
||||
|
||||
const Array<int>& dof_map=el->GetDofMap();
|
||||
|
||||
@@ -437,14 +437,14 @@ private:
|
||||
template<typename T>
|
||||
blitz::TinyVector<T,2> grad(const blitz::TinyVector<T,2>& x) const
|
||||
{
|
||||
int el_order=el->GetOrder();
|
||||
T u1[el_order+1];
|
||||
T u2[el_order+1];
|
||||
T d1[el_order+1];
|
||||
T d2[el_order+1];
|
||||
const int el_order = el->GetOrder();
|
||||
std::vector<T> u1(el_order+1);
|
||||
std::vector<T> u2(el_order+1);
|
||||
std::vector<T> d1(el_order+1);
|
||||
std::vector<T> d2(el_order+1);
|
||||
|
||||
TmplPoly_1D::CalcBernstein(el_order,x[0], u1, d1);
|
||||
TmplPoly_1D::CalcBernstein(el_order,x[1], u2, d2);
|
||||
TmplPoly_1D::CalcBernstein(el_order,x[0], u1.data(), d1.data());
|
||||
TmplPoly_1D::CalcBernstein(el_order,x[1], u2.data(), d2.data());
|
||||
|
||||
blitz::TinyVector<T,2> res(T(0.0),T(0.0));
|
||||
|
||||
|
||||
@@ -161,6 +161,7 @@ bool LinearForm::SupportsDevice() const
|
||||
|
||||
void LinearForm::UseFastAssembly(bool use_fa)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
fast_assembly = use_fa;
|
||||
|
||||
if (fast_assembly && SupportsDevice() && !ext)
|
||||
@@ -171,6 +172,8 @@ void LinearForm::UseFastAssembly(bool use_fa)
|
||||
|
||||
void LinearForm::Assemble()
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
Array<int> vdofs;
|
||||
ElementTransformation *eltrans;
|
||||
Vector elemvect;
|
||||
|
||||
+19
-33
@@ -15,10 +15,16 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
LinearFormExtension::LinearFormExtension(LinearForm *lf): lf(lf) { Update(); }
|
||||
LinearFormExtension::LinearFormExtension(LinearForm *lf): lf(lf)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
Update();
|
||||
}
|
||||
|
||||
void LinearFormExtension::Assemble()
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
const FiniteElementSpace &fes = *lf->FESpace();
|
||||
MFEM_VERIFY(lf->SupportsDevice(), "Not supported.");
|
||||
MFEM_VERIFY(lf->Size() == fes.GetVSize(), "LinearForm size does not "
|
||||
@@ -51,7 +57,7 @@ void LinearFormExtension::Assemble()
|
||||
{
|
||||
// scan the attributes to set the markers to 0 or 1
|
||||
const int NE = fes.GetNE();
|
||||
const auto attr = attributes.Read();
|
||||
const auto attr = attributes->Read();
|
||||
const auto dimk = domain_integs_marker_k->Read();
|
||||
auto markers_w = markers.Write();
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
@@ -93,13 +99,14 @@ void LinearFormExtension::Assemble()
|
||||
else
|
||||
{
|
||||
// scan the attributes to set the markers to 0 or 1
|
||||
const int NBE = bdr_attributes.Size();
|
||||
const auto attr = bdr_attributes.Read();
|
||||
const int NBE = bdr_face_attributes->Size();
|
||||
const auto attr = bdr_face_attributes->Read();
|
||||
const auto attr_markers = boundary_integs_marker_k->Read();
|
||||
auto markers_w = bdr_markers.Write();
|
||||
mfem::forall(NBE, [=] MFEM_HOST_DEVICE (int e)
|
||||
mfem::forall(NBE, [=] MFEM_HOST_DEVICE(int e)
|
||||
{
|
||||
markers_w[e] = attr_markers[attr[e]-1] == 1;
|
||||
markers_w[e] =
|
||||
attr[e] > 0 ? (attr_markers[attr[e] - 1] == 1) : false;
|
||||
});
|
||||
}
|
||||
|
||||
@@ -112,6 +119,8 @@ void LinearFormExtension::Assemble()
|
||||
|
||||
void LinearFormExtension::Update()
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
const FiniteElementSpace &fes = *lf->FESpace();
|
||||
const Mesh &mesh = *fes.GetMesh();
|
||||
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
|
||||
@@ -125,8 +134,7 @@ void LinearFormExtension::Update()
|
||||
//markers.UseDevice(true);
|
||||
|
||||
// Gather the attributes on the host from all the elements
|
||||
attributes.SetSize(NE);
|
||||
for (int i = 0; i < NE; ++i) { attributes[i] = mesh.GetAttribute(i); }
|
||||
attributes = &mesh.GetElementAttributes();
|
||||
|
||||
elem_restrict_lex = fes.GetElementRestriction(ordering);
|
||||
MFEM_VERIFY(elem_restrict_lex, "Element restriction not available");
|
||||
@@ -136,34 +144,12 @@ void LinearFormExtension::Update()
|
||||
|
||||
if (lf->boundary_integs.Size() > 0)
|
||||
{
|
||||
const int nf_bdr = fes.GetNFbyType(FaceType::Boundary);
|
||||
bdr_face_attributes = &mesh.GetBdrFaceAttributes();
|
||||
|
||||
const int nf_bdr = bdr_face_attributes->Size();
|
||||
bdr_markers.SetSize(nf_bdr);
|
||||
// bdr_markers.UseDevice(true);
|
||||
|
||||
// The face restriction will give us "face E-vectors" on the boundary that
|
||||
// are numbered in the order of the faces of mesh. This numbering will be
|
||||
// different than the numbering of the boundary elements. We compute
|
||||
// mappings so that the array `bdr_attributes[i]` gives the boundary
|
||||
// attribute of the `i`th boundary face in the mesh face order.
|
||||
std::unordered_map<int,int> f_to_be;
|
||||
for (int i = 0; i < mesh.GetNBE(); ++i)
|
||||
{
|
||||
const int f = mesh.GetBdrElementFaceIndex(i);
|
||||
f_to_be[f] = i;
|
||||
}
|
||||
MFEM_VERIFY(size_t(nf_bdr) == f_to_be.size(), "Incompatible sizes");
|
||||
bdr_attributes.SetSize(nf_bdr);
|
||||
int f_ind = 0;
|
||||
for (int f = 0; f < mesh.GetNumFaces(); ++f)
|
||||
{
|
||||
if (f_to_be.find(f) != f_to_be.end())
|
||||
{
|
||||
const int be = f_to_be[f];
|
||||
bdr_attributes[f_ind] = mesh.GetBdrAttribute(be);
|
||||
++f_ind;
|
||||
}
|
||||
}
|
||||
|
||||
bdr_restrict_lex =
|
||||
dynamic_cast<const FaceRestriction*>(
|
||||
fes.GetFaceRestriction(ordering, FaceType::Boundary,
|
||||
|
||||
@@ -26,7 +26,8 @@ class LinearForm;
|
||||
class LinearFormExtension
|
||||
{
|
||||
/// Attributes of all mesh elements.
|
||||
Array<int> attributes, bdr_attributes;
|
||||
const Array<int> *attributes; // Not owned
|
||||
const Array<int> *bdr_face_attributes; // Not owned
|
||||
|
||||
/// Temporary markers for device kernels.
|
||||
Array<int> markers, bdr_markers;
|
||||
|
||||
@@ -365,6 +365,8 @@ FiniteElementSpace &LORBase::GetFESpace() const
|
||||
|
||||
void LORBase::AssembleSystem(BilinearForm &a_ho, const Array<int> &ess_dofs)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
A.Clear();
|
||||
delete a;
|
||||
if (BatchedLORAssembly::FormIsSupported(a_ho))
|
||||
|
||||
@@ -360,6 +360,8 @@ void BatchedLORAssembly::FillJAndData(SparseMatrix &A) const
|
||||
|
||||
void BatchedLORAssembly::SparseIJToCSR(OperatorHandle &A) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
const int nvdof = fes_ho.GetVSize();
|
||||
|
||||
// If A contains an existing SparseMatrix, reuse it (and try to reuse its
|
||||
@@ -417,6 +419,8 @@ static void Assemble_(LOR_KERNEL &kernel, int dim, int sdim, int order)
|
||||
template <typename LOR_KERNEL>
|
||||
void BatchedLORAssembly::AssemblyKernel(BilinearForm &a)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
LOR_KERNEL kernel(a, fes_ho, X_vert, sparse_ij, sparse_mapping);
|
||||
|
||||
const int dim = fes_ho.GetMesh()->Dimension();
|
||||
|
||||
@@ -184,6 +184,8 @@ void BatchedLOR_H1::Assemble2D()
|
||||
template <int ORDER>
|
||||
void BatchedLOR_H1::Assemble3D()
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
const int nel_ho = fes_ho.GetNE();
|
||||
static constexpr int nv = 8;
|
||||
static constexpr int dim = 3;
|
||||
|
||||
@@ -10,6 +10,7 @@
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "multigrid.hpp"
|
||||
#include "../general/annotation.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -135,6 +136,8 @@ void MultigridBase::Mult(const Vector& x, Vector& y) const
|
||||
void MultigridBase::ArrayMult(const Array<const Vector*>& X_,
|
||||
Array<Vector*>& Y_) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
MFEM_ASSERT(operators.Size() > 0,
|
||||
"Multigrid solver does not have operators set!");
|
||||
MFEM_ASSERT(X_.Size() == Y_.Size(),
|
||||
@@ -158,6 +161,8 @@ void MultigridBase::ArrayMult(const Array<const Vector*>& X_,
|
||||
|
||||
void MultigridBase::SmoothingStep(int level, bool zero, bool transpose) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
// y = y + S (x - A y) or y = y + S^T (x - A y)
|
||||
|
||||
// Note: 'zero' == true means that Y(level,*) are not initialized and we
|
||||
@@ -201,6 +206,8 @@ void MultigridBase::SmoothingStep(int level, bool zero, bool transpose) const
|
||||
|
||||
void MultigridBase::CoarseSolve(bool zero) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
// See the comment about iterative mode in SmoothingStep()
|
||||
coarse_solver->iterative_mode = false;
|
||||
|
||||
|
||||
@@ -124,6 +124,8 @@ void ParBilinearForm::pAllocMat()
|
||||
void ParBilinearForm::ParallelRAP(SparseMatrix &loc_A, OperatorHandle &A,
|
||||
bool steal_loc_A)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
ParFiniteElementSpace &pfespace = *ParFESpace();
|
||||
|
||||
// Create a block diagonal parallel matrix
|
||||
|
||||
@@ -0,0 +1,591 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "pderefmat_op.hpp"
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
|
||||
#include "fes_kernels.hpp"
|
||||
/// \cond DO_NOT_DOCUMENT
|
||||
namespace mfem
|
||||
{
|
||||
namespace internal
|
||||
{
|
||||
template <Ordering::Type Order, bool Atomic>
|
||||
static void ParDerefMultKernelImpl(const ParDerefineMatrixOp &op,
|
||||
const Vector &x, Vector &y)
|
||||
{
|
||||
// pack sends
|
||||
if (op.xghost_send.Size())
|
||||
{
|
||||
auto src = x.Read();
|
||||
auto idcs = op.send_permutations.Read();
|
||||
auto dst = Device::GetGPUAwareMPI() ? op.xghost_send.Write()
|
||||
: op.xghost_send.HostWrite();
|
||||
auto vdims = op.fespace->GetVDim();
|
||||
auto sptr = op.send_segment_idcs.Read();
|
||||
auto lptr = op.send_segments.Read();
|
||||
auto old_ndofs = x.Size() / vdims;
|
||||
|
||||
forall(op.send_permutations.Size(), [=] MFEM_HOST_DEVICE(int i)
|
||||
{
|
||||
int seg = sptr[i];
|
||||
int width = lptr[seg + 1] - lptr[seg];
|
||||
auto tdst = dst + i + lptr[seg] * vdims;
|
||||
int sign = 1;
|
||||
int col = idcs[i];
|
||||
if (col < 0)
|
||||
{
|
||||
sign = -1;
|
||||
col = -1 - col;
|
||||
}
|
||||
for (int vdim = 0; vdim < vdims; ++vdim)
|
||||
{
|
||||
tdst[vdim * width] =
|
||||
sign
|
||||
* src[Order == Ordering::byNODES ? (col + vdim * old_ndofs)
|
||||
: (col * vdims + vdim)];
|
||||
}
|
||||
});
|
||||
// TODO: is this needed so we can send the packed data correctly?
|
||||
// unclear for GPU-aware MPI, definitely required otherwise
|
||||
MFEM_DEVICE_SYNC;
|
||||
}
|
||||
// initialize off-diagonal receive and send
|
||||
op.requests.clear();
|
||||
if (op.xghost_recv.Size())
|
||||
{
|
||||
auto vdims = op.fespace->GetVDim();
|
||||
auto rcv = Device::GetGPUAwareMPI() ? op.xghost_recv.Write()
|
||||
: op.xghost_recv.HostWrite();
|
||||
for (int i = 0; i < op.recv_ranks.Size(); ++i)
|
||||
{
|
||||
op.requests.emplace_back();
|
||||
MPI_Irecv(rcv + op.recv_segments[i] * vdims,
|
||||
(op.recv_segments[i + 1] - op.recv_segments[i]) * vdims,
|
||||
MPITypeMap<real_t>::mpi_type, op.recv_ranks[i],
|
||||
MessageTag::DEREFINEMENT_MATRIX_CONSTRUCTION_DATA,
|
||||
op.fespace->GetComm(), &op.requests.back());
|
||||
}
|
||||
}
|
||||
if (op.xghost_send.Size())
|
||||
{
|
||||
auto vdims = op.fespace->GetVDim();
|
||||
// only is a GPU mem ptr if GPU-aware MPI is enabled
|
||||
auto dst = Device::GetGPUAwareMPI() ? op.xghost_send.Write()
|
||||
: op.xghost_send.HostWrite();
|
||||
for (int i = 0; i < op.send_ranks.Size(); ++i)
|
||||
{
|
||||
op.requests.emplace_back();
|
||||
MPI_Isend(dst + op.send_segments[i] * vdims,
|
||||
(op.send_segments[i + 1] - op.send_segments[i]) * vdims,
|
||||
MPITypeMap<real_t>::mpi_type, op.send_ranks[i],
|
||||
MessageTag::DEREFINEMENT_MATRIX_CONSTRUCTION_DATA,
|
||||
op.fespace->GetComm(), &op.requests.back());
|
||||
}
|
||||
}
|
||||
{
|
||||
// diagonal
|
||||
DerefineMatrixOpMultFunctor<Order, Atomic, true> func;
|
||||
func.xptr = x.Read();
|
||||
y.UseDevice();
|
||||
y = 0.;
|
||||
func.yptr = y.ReadWrite();
|
||||
func.bsptr = op.block_storage.Read();
|
||||
func.boptr = op.block_offsets.Read();
|
||||
func.brptr = op.block_row_idcs_offsets.Read();
|
||||
func.bcptr = op.block_col_idcs_offsets.Read();
|
||||
func.rptr = op.row_idcs.Read();
|
||||
func.cptr = op.col_idcs.Read();
|
||||
func.vdims = op.fespace->GetVDim();
|
||||
func.nblocks = op.block_offsets.Size();
|
||||
func.width = op.Width() / func.vdims;
|
||||
func.height = op.Height() / func.vdims;
|
||||
func.Run(op.max_rows);
|
||||
}
|
||||
// wait for comm to finish, if any
|
||||
if (op.requests.size())
|
||||
{
|
||||
MPI_Waitall(op.requests.size(), op.requests.data(), MPI_STATUSES_IGNORE);
|
||||
if (op.xghost_recv.Size())
|
||||
{
|
||||
// off-diagonal kernel
|
||||
DerefineMatrixOpMultFunctor<Order, Atomic, false> func;
|
||||
// directly read from host-pinned memory if not using GPU-aware MPI
|
||||
func.xptr = Device::GetGPUAwareMPI() ? op.xghost_recv.Read()
|
||||
: op.xghost_recv.HostRead();
|
||||
func.yptr = y.ReadWrite();
|
||||
func.bsptr = op.block_storage.Read();
|
||||
func.boptr = op.off_diag_block_offsets.Read();
|
||||
func.brptr = op.block_off_diag_row_idcs_offsets.Read();
|
||||
func.rsptr = op.recv_segment_idcs.Read();
|
||||
func.segptr = op.recv_segments.Read();
|
||||
func.coptr = op.block_off_diag_col_offsets.Read();
|
||||
func.bwptr = op.block_off_diag_widths.Read();
|
||||
func.rptr = op.row_off_diag_idcs.Read();
|
||||
func.vdims = op.fespace->GetVDim();
|
||||
func.nblocks = op.off_diag_block_offsets.Size();
|
||||
func.width = op.xghost_recv.Size() / func.vdims;
|
||||
func.height = op.Height() / func.vdims;
|
||||
func.Run(op.max_rows);
|
||||
}
|
||||
}
|
||||
}
|
||||
} // namespace internal
|
||||
|
||||
template <Ordering::Type Order, bool Atomic>
|
||||
ParDerefineMatrixOp::MultKernelType ParDerefineMatrixOp::MultKernel::Kernel()
|
||||
{
|
||||
return internal::ParDerefMultKernelImpl<Order, Atomic>;
|
||||
}
|
||||
|
||||
ParDerefineMatrixOp::MultKernelType
|
||||
ParDerefineMatrixOp::MultKernel::Fallback(Ordering::Type, bool)
|
||||
{
|
||||
MFEM_ABORT("invalid MultKernel parameters");
|
||||
}
|
||||
|
||||
ParDerefineMatrixOp::Kernels::Kernels()
|
||||
{
|
||||
MultKernel::Specialization<Ordering::byNODES, false>::Add();
|
||||
MultKernel::Specialization<Ordering::byVDIM, false>::Add();
|
||||
MultKernel::Specialization<Ordering::byNODES, true>::Add();
|
||||
MultKernel::Specialization<Ordering::byVDIM, true>::Add();
|
||||
}
|
||||
|
||||
void ParDerefineMatrixOp::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
const bool is_dg = fespace->FEColl()->GetContType()
|
||||
== FiniteElementCollection::DISCONTINUOUS;
|
||||
// DG needs atomic summation
|
||||
MultKernel::Run(fespace->GetOrdering(), is_dg, *this, x, y);
|
||||
// use this to prevent xghost* from being re-purposed for subsequent Mult
|
||||
// calls
|
||||
MFEM_DEVICE_SYNC;
|
||||
}
|
||||
|
||||
ParDerefineMatrixOp::ParDerefineMatrixOp(ParFiniteElementSpace &fespace_,
|
||||
int old_ndofs,
|
||||
const Table *old_elem_dof,
|
||||
const Table *old_elem_fos)
|
||||
: Operator(fespace_.GetVSize(), old_ndofs * fespace_.GetVDim()),
|
||||
fespace(&fespace_)
|
||||
{
|
||||
static Kernels kernels;
|
||||
constexpr int max_team_size = 256;
|
||||
|
||||
const int NRanks = fespace->GetNRanks();
|
||||
|
||||
const int nrk = HYPRE_AssumedPartitionCheck() ? 2 : NRanks;
|
||||
|
||||
MFEM_VERIFY(fespace->Nonconforming(),
|
||||
"Not implemented for conforming meshes.");
|
||||
MFEM_VERIFY(fespace->old_dof_offsets[nrk],
|
||||
"Missing previous (finer) space.");
|
||||
|
||||
const int MyRank = fespace->GetMyRank();
|
||||
ParNCMesh *old_pncmesh = fespace->GetParMesh()->pncmesh;
|
||||
const CoarseFineTransformations &dtrans =
|
||||
old_pncmesh->GetDerefinementTransforms();
|
||||
const Array<int> &old_ranks = old_pncmesh->GetDerefineOldRanks();
|
||||
|
||||
const bool is_dg = fespace->FEColl()->GetContType()
|
||||
== FiniteElementCollection::DISCONTINUOUS;
|
||||
DenseMatrix localRVO; // for variable-order only
|
||||
|
||||
DenseTensor localR[Geometry::NumGeom];
|
||||
int diag_rows = 0;
|
||||
int off_diag_rows = 0;
|
||||
int diag_cols = 0;
|
||||
|
||||
auto get_ldofs = [&](int k) -> int
|
||||
{
|
||||
const Embedding &emb = dtrans.embeddings[k];
|
||||
if (fespace->IsVariableOrder())
|
||||
{
|
||||
const FiniteElement *fe = fespace->GetFE(emb.parent);
|
||||
return fe->GetDof();
|
||||
}
|
||||
else
|
||||
{
|
||||
Geometry::Type geom =
|
||||
fespace->GetParMesh()->GetElementBaseGeometry(emb.parent);
|
||||
return fespace->FEColl()->FiniteElementForGeometry(geom)->GetDof();
|
||||
}
|
||||
};
|
||||
Array<int> dofs, old_dofs;
|
||||
max_rows = 1;
|
||||
// first pass:
|
||||
// - determine memory block lengths
|
||||
// - identify dofs in x we need to send/receive
|
||||
// don't need to send the indices, fine rank will re-arrange and sign
|
||||
// change x before transmitting the ghost data
|
||||
|
||||
// key: coarse rank to send to
|
||||
// value: old dofs to send (with sign)
|
||||
std::map<int, std::vector<int>> to_send;
|
||||
// key: fine rank
|
||||
// value: indices into dtrans.embeddings
|
||||
std::map<int, std::vector<int>> od_ks;
|
||||
// key: fine rank
|
||||
// value: recv segment length
|
||||
std::map<int, int> od_seg_lens;
|
||||
int send_len = 0;
|
||||
int recv_len = 0;
|
||||
// size of block_storage, if fespace->IsVariableOrder()
|
||||
// otherwise unused
|
||||
int total_size = 0;
|
||||
int num_diagonal_blocks = 0;
|
||||
int num_offdiagonal_blocks = 0;
|
||||
for (int k = 0; k < dtrans.embeddings.Size(); ++k)
|
||||
{
|
||||
const Embedding &emb = dtrans.embeddings[k];
|
||||
int fine_rank = old_ranks[k];
|
||||
int coarse_rank = (emb.parent < 0) ? (-1 - emb.parent)
|
||||
: old_pncmesh->ElementRank(emb.parent);
|
||||
if (coarse_rank != MyRank && fine_rank == MyRank)
|
||||
{
|
||||
// this rank needs to send data in x to course_rank
|
||||
old_elem_dof->GetRow(k, old_dofs);
|
||||
auto &tmp = to_send[coarse_rank];
|
||||
send_len += old_dofs.Size();
|
||||
for (int i = 0; i < old_dofs.Size(); ++i)
|
||||
{
|
||||
tmp.emplace_back(old_dofs[i]);
|
||||
}
|
||||
}
|
||||
else if (coarse_rank == MyRank && fine_rank != MyRank)
|
||||
{
|
||||
// this rank needs to receive data in x from fine_rank
|
||||
MFEM_ASSERT(emb.parent >= 0, "");
|
||||
auto ldofs = get_ldofs(k);
|
||||
off_diag_rows += ldofs;
|
||||
recv_len += ldofs;
|
||||
od_ks[fine_rank].emplace_back(k);
|
||||
od_seg_lens[fine_rank] += ldofs;
|
||||
++num_offdiagonal_blocks;
|
||||
if (fespace->IsVariableOrder())
|
||||
{
|
||||
total_size += ldofs * ldofs;
|
||||
}
|
||||
}
|
||||
else if (coarse_rank == MyRank && fine_rank == MyRank)
|
||||
{
|
||||
MFEM_ASSERT(emb.parent >= 0, "");
|
||||
// diagonal
|
||||
++num_diagonal_blocks;
|
||||
auto ldofs = get_ldofs(k);
|
||||
diag_rows += ldofs;
|
||||
diag_cols += ldofs;
|
||||
if (fespace->IsVariableOrder())
|
||||
{
|
||||
total_size += ldofs * ldofs;
|
||||
}
|
||||
}
|
||||
}
|
||||
send_segments.SetSize(to_send.size() + 1);
|
||||
send_segments.HostWrite();
|
||||
send_ranks.SetSize(to_send.size());
|
||||
send_ranks.HostWrite();
|
||||
{
|
||||
int idx = 0;
|
||||
send_segments[0] = 0;
|
||||
for (auto &tmp : to_send)
|
||||
{
|
||||
send_ranks[idx] = tmp.first;
|
||||
send_segments[idx + 1] = send_segments[idx] + tmp.second.size();
|
||||
++idx;
|
||||
}
|
||||
}
|
||||
recv_segment_idcs.SetSize(off_diag_rows);
|
||||
recv_segment_idcs.HostWrite();
|
||||
recv_segments.SetSize(od_ks.size() + 1);
|
||||
recv_segments.HostWrite();
|
||||
recv_ranks.SetSize(od_ks.size());
|
||||
recv_ranks.HostWrite();
|
||||
|
||||
// set sizes
|
||||
row_idcs.SetSize(diag_rows);
|
||||
row_idcs.HostWrite();
|
||||
row_off_diag_idcs.SetSize(off_diag_rows);
|
||||
row_off_diag_idcs.HostWrite();
|
||||
col_idcs.SetSize(diag_cols);
|
||||
col_idcs.HostWrite();
|
||||
block_row_idcs_offsets.SetSize(num_diagonal_blocks + 1);
|
||||
block_row_idcs_offsets.HostWrite();
|
||||
block_col_idcs_offsets.SetSize(num_diagonal_blocks + 1);
|
||||
block_col_idcs_offsets.HostWrite();
|
||||
block_off_diag_row_idcs_offsets.SetSize(num_offdiagonal_blocks + 1);
|
||||
block_off_diag_row_idcs_offsets.HostWrite();
|
||||
block_off_diag_col_offsets.SetSize(num_offdiagonal_blocks);
|
||||
block_off_diag_col_offsets.HostWrite();
|
||||
block_off_diag_widths.SetSize(num_offdiagonal_blocks);
|
||||
block_off_diag_widths.HostWrite();
|
||||
pack_col_idcs.SetSize(send_len);
|
||||
// memory manager doesn't appear to have a graceful fallback for
|
||||
// HOST_PINNED if not built with CUDA or HIP
|
||||
#if defined(MFEM_USE_CUDA) or defined(MFEM_USE_HIP)
|
||||
xghost_send.SetSize(send_len * fespace->GetVDim(),
|
||||
Device::GetGPUAwareMPI() ? MemoryType::DEFAULT
|
||||
: MemoryType::HOST_PINNED);
|
||||
xghost_recv.SetSize(recv_len * fespace->GetVDim(),
|
||||
Device::GetGPUAwareMPI() ? MemoryType::DEFAULT
|
||||
: MemoryType::HOST_PINNED);
|
||||
#else
|
||||
xghost_send.SetSize(send_len * fespace->GetVDim());
|
||||
xghost_recv.SetSize(recv_len * fespace->GetVDim());
|
||||
#endif
|
||||
send_permutations.SetSize(send_len);
|
||||
send_segment_idcs.SetSize(send_len);
|
||||
block_offsets.SetSize(num_diagonal_blocks);
|
||||
block_offsets.HostWrite();
|
||||
off_diag_block_offsets.SetSize(num_offdiagonal_blocks);
|
||||
off_diag_block_offsets.HostWrite();
|
||||
int geom_offsets[Geometry::NumGeom];
|
||||
real_t *bs_ptr;
|
||||
|
||||
if (fespace->IsVariableOrder())
|
||||
{
|
||||
block_storage.SetSize(total_size);
|
||||
bs_ptr = block_storage.HostWrite();
|
||||
// compute block data later
|
||||
}
|
||||
else
|
||||
{
|
||||
// compression scheme:
|
||||
// block_offsets is the start of each block, potentially repeated
|
||||
// only need to store localR for used shapes
|
||||
Mesh::GeometryList elem_geoms(*fespace->GetMesh());
|
||||
|
||||
int size = 0;
|
||||
for (int i = 0; i < elem_geoms.Size(); ++i)
|
||||
{
|
||||
fespace->GetLocalDerefinementMatrices(elem_geoms[i],
|
||||
localR[elem_geoms[i]]);
|
||||
geom_offsets[elem_geoms[i]] = size;
|
||||
size += localR[elem_geoms[i]].TotalSize();
|
||||
}
|
||||
block_storage.SetSize(size);
|
||||
bs_ptr = block_storage.HostWrite();
|
||||
// copy blocks into block_storage
|
||||
for (int i = 0; i < elem_geoms.Size(); ++i)
|
||||
{
|
||||
std::copy(localR[elem_geoms[i]].Data(),
|
||||
localR[elem_geoms[i]].Data()
|
||||
+ localR[elem_geoms[i]].TotalSize(),
|
||||
bs_ptr);
|
||||
bs_ptr += localR[elem_geoms[i]].TotalSize();
|
||||
}
|
||||
}
|
||||
|
||||
// second pass:
|
||||
// - initialize buffers
|
||||
|
||||
{
|
||||
auto ptr = send_permutations.HostWrite();
|
||||
auto ptr2 = send_segment_idcs.HostWrite();
|
||||
int i = 0;
|
||||
for (auto &v : to_send)
|
||||
{
|
||||
ptr = std::copy(v.second.begin(), v.second.end(), ptr);
|
||||
for (size_t idx = 0; idx < v.second.size(); ++idx)
|
||||
{
|
||||
*ptr2 = i;
|
||||
++ptr2;
|
||||
}
|
||||
++i;
|
||||
}
|
||||
}
|
||||
|
||||
block_row_idcs_offsets[0] = 0;
|
||||
block_col_idcs_offsets[0] = 0;
|
||||
block_off_diag_row_idcs_offsets[0] = 0;
|
||||
Array<int> mark(fespace->GetNDofs());
|
||||
mark = 0;
|
||||
{
|
||||
int idx = 0;
|
||||
recv_segments[0] = 0;
|
||||
for (auto &v : od_seg_lens)
|
||||
{
|
||||
recv_ranks[idx] = v.first;
|
||||
recv_segments[idx + 1] = recv_segments[idx] + v.second;
|
||||
++idx;
|
||||
}
|
||||
}
|
||||
// key: index into dtrans.embeddings
|
||||
// value: off-diagonal block offset, od_ridx, seg id
|
||||
std::unordered_map<int, std::array<int, 3>> ks_map;
|
||||
{
|
||||
int od_ridx = 0;
|
||||
int seg_id = 0;
|
||||
for (auto &v1 : od_ks)
|
||||
{
|
||||
for (auto k : v1.second)
|
||||
{
|
||||
auto &tmp = ks_map[k];
|
||||
tmp[0] = ks_map.size() - 1;
|
||||
tmp[1] = od_ridx;
|
||||
tmp[2] = seg_id;
|
||||
od_ridx += get_ldofs(k);
|
||||
}
|
||||
++seg_id;
|
||||
}
|
||||
}
|
||||
int diag_idx = 0;
|
||||
int var_offset = 0;
|
||||
int ridx = 0;
|
||||
int cidx = 0;
|
||||
// can't break this up into separate diagonals/off-diagonals loops because
|
||||
// of mark
|
||||
for (int k = 0; k < dtrans.embeddings.Size(); ++k)
|
||||
{
|
||||
const Embedding &emb = dtrans.embeddings[k];
|
||||
if (emb.parent < 0)
|
||||
{
|
||||
continue;
|
||||
}
|
||||
int fine_rank = old_ranks[k];
|
||||
int coarse_rank = (emb.parent < 0) ? (-1 - emb.parent)
|
||||
: old_pncmesh->ElementRank(emb.parent);
|
||||
if (coarse_rank == MyRank)
|
||||
{
|
||||
// either diagonal or off-diagonal
|
||||
Geometry::Type geom =
|
||||
fespace->GetMesh()->GetElementBaseGeometry(emb.parent);
|
||||
if (fespace->IsVariableOrder())
|
||||
{
|
||||
const FiniteElement *fe = fespace->GetFE(emb.parent);
|
||||
const DenseTensor &pmats = dtrans.point_matrices[geom];
|
||||
const int ldof = fe->GetDof();
|
||||
|
||||
IsoparametricTransformation isotr;
|
||||
isotr.SetIdentityTransformation(geom);
|
||||
|
||||
localRVO.SetSize(ldof, ldof);
|
||||
isotr.SetPointMat(pmats(emb.matrix));
|
||||
// Local restriction is size ldofxldof assuming that the parent
|
||||
// and child are of same polynomial order.
|
||||
fe->GetLocalRestriction(isotr, localRVO);
|
||||
// copy block
|
||||
auto s = localRVO.Height() * localRVO.Width();
|
||||
std::copy(localRVO.Data(), localRVO.Data() + s, bs_ptr);
|
||||
bs_ptr += s;
|
||||
}
|
||||
DenseMatrix &lR =
|
||||
fespace->IsVariableOrder() ? localRVO : localR[geom](emb.matrix);
|
||||
max_rows = std::max(lR.Height(), max_rows);
|
||||
auto size = lR.Height() * lR.Width();
|
||||
fespace->elem_dof->GetRow(emb.parent, dofs);
|
||||
if (fine_rank == MyRank)
|
||||
{
|
||||
// diagonal
|
||||
old_elem_dof->GetRow(k, old_dofs);
|
||||
MFEM_VERIFY(old_dofs.Size() == dofs.Size(),
|
||||
"Parent and child must have same #dofs.");
|
||||
block_row_idcs_offsets[diag_idx + 1] =
|
||||
block_row_idcs_offsets[diag_idx] + lR.Height();
|
||||
block_col_idcs_offsets[diag_idx + 1] =
|
||||
block_col_idcs_offsets[diag_idx] + lR.Width();
|
||||
|
||||
if (fespace->IsVariableOrder())
|
||||
{
|
||||
block_offsets[diag_idx] = var_offset;
|
||||
var_offset += size;
|
||||
}
|
||||
else
|
||||
{
|
||||
block_offsets[diag_idx] = geom_offsets[geom] + size * emb.matrix;
|
||||
}
|
||||
for (int i = 0; i < lR.Height(); ++i, ++ridx)
|
||||
{
|
||||
if (!std::isfinite(lR(i, 0)))
|
||||
{
|
||||
row_idcs[ridx] = INT_MAX;
|
||||
continue;
|
||||
}
|
||||
int r = dofs[i];
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
if (is_dg || !mark[m])
|
||||
{
|
||||
row_idcs[ridx] = r;
|
||||
mark[m] = 1;
|
||||
}
|
||||
else
|
||||
{
|
||||
row_idcs[ridx] = INT_MAX;
|
||||
}
|
||||
}
|
||||
for (int i = 0; i < lR.Width(); ++i, ++cidx)
|
||||
{
|
||||
col_idcs[cidx] = old_dofs[i];
|
||||
}
|
||||
++diag_idx;
|
||||
}
|
||||
else
|
||||
{
|
||||
// off-diagonal
|
||||
auto &tmp = ks_map.at(k);
|
||||
auto od_idx = tmp[0];
|
||||
auto od_ridx = tmp[1];
|
||||
block_off_diag_row_idcs_offsets[od_idx + 1] =
|
||||
block_off_diag_row_idcs_offsets[od_idx] + lR.Height();
|
||||
block_off_diag_col_offsets[od_idx] = od_ridx;
|
||||
block_off_diag_widths[od_idx] = lR.Width();
|
||||
recv_segment_idcs[od_idx] = tmp[2];
|
||||
|
||||
if (fespace->IsVariableOrder())
|
||||
{
|
||||
off_diag_block_offsets[od_idx] = var_offset;
|
||||
var_offset += size;
|
||||
}
|
||||
else
|
||||
{
|
||||
off_diag_block_offsets[od_idx] =
|
||||
geom_offsets[geom] + size * emb.matrix;
|
||||
}
|
||||
for (int i = 0; i < lR.Height(); ++i, ++od_ridx)
|
||||
{
|
||||
if (!std::isfinite(lR(i, 0)))
|
||||
{
|
||||
row_off_diag_idcs[od_ridx] = INT_MAX;
|
||||
continue;
|
||||
}
|
||||
int r = dofs[i];
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
if (is_dg || !mark[m])
|
||||
{
|
||||
row_off_diag_idcs[od_ridx] = r;
|
||||
mark[m] = 1;
|
||||
}
|
||||
else
|
||||
{
|
||||
row_off_diag_idcs[od_ridx] = INT_MAX;
|
||||
}
|
||||
}
|
||||
++od_idx;
|
||||
}
|
||||
}
|
||||
}
|
||||
// if not using GPU, set max_rows/max_cols to zero
|
||||
if (Device::Allows(Backend::DEVICE_MASK))
|
||||
{
|
||||
max_rows = std::min(max_rows, max_team_size);
|
||||
}
|
||||
else
|
||||
{
|
||||
max_rows = 1;
|
||||
}
|
||||
requests.reserve(recv_ranks.Size() + send_ranks.Size());
|
||||
}
|
||||
} // namespace mfem
|
||||
/// \endcond DO_NOT_DOCUMENT
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,111 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_PDEREFMAT_OP
|
||||
#define MFEM_PDEREFMAT_OP
|
||||
|
||||
#include "../config/config.hpp"
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
|
||||
#include "pfespace.hpp"
|
||||
|
||||
#include "kernel_dispatch.hpp"
|
||||
|
||||
#include <vector>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// \cond DO_NOT_DOCUMENT
|
||||
struct ParDerefineMatrixOp : public Operator
|
||||
{
|
||||
ParFiniteElementSpace *fespace;
|
||||
/// offsets into block_storage for diagonal
|
||||
Array<int> block_offsets;
|
||||
/// offsets into row_idcs for diagonal
|
||||
Array<int> block_row_idcs_offsets;
|
||||
/// offsets into col_idcs for diagonal
|
||||
Array<int> block_col_idcs_offsets;
|
||||
|
||||
/// offsets into block_storage for off-diagonal
|
||||
Array<int> off_diag_block_offsets;
|
||||
/// offsets into row_idcs for off-diagonal
|
||||
Array<int> block_off_diag_row_idcs_offsets;
|
||||
Array<int> block_off_diag_col_offsets;
|
||||
Array<int> block_off_diag_widths;
|
||||
/// mapping for row dofs, INT_MAX indicates the block row should be ignored.
|
||||
/// negative means the row data should be negated.
|
||||
/// only for diagonal blocks
|
||||
Array<int> row_idcs;
|
||||
/// mapping for col dofs, negative means the col data should be negated.
|
||||
/// only for diagonal blocks
|
||||
Array<int> col_idcs;
|
||||
|
||||
Array<int> pack_col_idcs;
|
||||
|
||||
/// mapping for row dofs, INT_MAX indicates the block row should be ignored.
|
||||
/// negative means the row data should be negated.
|
||||
/// only for off-diagonal blocks
|
||||
Array<int> row_off_diag_idcs;
|
||||
/// dense block matrices which can be reused to construct the full matrix
|
||||
/// operation. These are stored contiguously and blocks have no restrictions
|
||||
/// on shape (can be rectangle and differ from block to block).
|
||||
/// This is only for the diagonal block.
|
||||
Vector block_storage;
|
||||
/// maximum height of any block in block_storage for GPU
|
||||
/// parallelization, or 1 for CPU runs.
|
||||
int max_rows;
|
||||
|
||||
/// quasi Ordering::byNODES, broken into sections by ranks we need to send
|
||||
/// the data to
|
||||
mutable Vector xghost_send;
|
||||
/// quasi Ordering::byNODES, broken into sections by ranks we received
|
||||
/// the data from
|
||||
mutable Vector xghost_recv;
|
||||
/// maps off-diagonal k to segment
|
||||
Array<int> recv_segment_idcs;
|
||||
/// cumulative count of dofs which will be received from other ranks
|
||||
Array<int> recv_segments;
|
||||
/// Source rank of each recv segment
|
||||
Array<int> recv_ranks;
|
||||
/// What send segment each entry in send_permutations corresponds to
|
||||
Array<int> send_segment_idcs;
|
||||
/// cumulative count of dofs which will be sent to other ranks
|
||||
Array<int> send_segments;
|
||||
/// Destination rank of each send segment
|
||||
Array<int> send_ranks;
|
||||
/// how to permute/sign change values from our local x to send to other ranks
|
||||
Array<int> send_permutations;
|
||||
/// internal buffer for MPI requests
|
||||
mutable std::vector<MPI_Request> requests;
|
||||
|
||||
using MultKernelType = void (*)(const ParDerefineMatrixOp &, const Vector &,
|
||||
Vector &);
|
||||
/// template args: ordering, atomic
|
||||
MFEM_REGISTER_KERNELS(MultKernel, MultKernelType, (Ordering::Type, bool));
|
||||
|
||||
struct Kernels
|
||||
{
|
||||
Kernels();
|
||||
};
|
||||
|
||||
void Mult(const Vector &x, Vector &y) const;
|
||||
|
||||
ParDerefineMatrixOp(ParFiniteElementSpace &fespace_, int old_ndofs,
|
||||
const Table *old_elem_dof, const Table *old_elem_fos);
|
||||
};
|
||||
/// \endcond DO_NOT_DOCUMENT
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
|
||||
#endif
|
||||
+58
-33
@@ -22,12 +22,13 @@
|
||||
#include "../mesh/mesh_headers.hpp"
|
||||
#include "../general/binaryio.hpp"
|
||||
|
||||
#include "pderefmat_op.hpp"
|
||||
|
||||
#include <limits>
|
||||
#include <list>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
ParFiniteElementSpace::ParFiniteElementSpace(
|
||||
const ParFiniteElementSpace &orig, ParMesh *pmesh,
|
||||
const FiniteElementCollection *fec)
|
||||
@@ -62,9 +63,11 @@ ParFiniteElementSpace::ParFiniteElementSpace(
|
||||
|
||||
ParFiniteElementSpace::ParFiniteElementSpace(
|
||||
ParMesh *pm, const FiniteElementCollection *f, int dim, int ordering)
|
||||
: FiniteElementSpace(pm, f, dim, ordering)
|
||||
: FiniteElementSpace((MFEM_PERF_BEGIN(_MFEM_FUNC_NAME), pm),
|
||||
f, dim, ordering)
|
||||
{
|
||||
ParInit(pm);
|
||||
MFEM_PERF_END(_MFEM_FUNC_NAME);
|
||||
}
|
||||
|
||||
ParFiniteElementSpace::ParFiniteElementSpace(
|
||||
@@ -91,6 +94,7 @@ ParNURBSExtension *ParFiniteElementSpace::MakeLocalNURBSext(
|
||||
|
||||
void ParFiniteElementSpace::ParInit(ParMesh *pm)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
pmesh = pm;
|
||||
pncmesh = nullptr;
|
||||
|
||||
@@ -180,6 +184,7 @@ void ParFiniteElementSpace::CommunicateGhostOrder()
|
||||
|
||||
void ParFiniteElementSpace::Construct()
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
if (NURBSext)
|
||||
{
|
||||
ConstructTrueNURBSDofs();
|
||||
@@ -838,6 +843,8 @@ void ParFiniteElementSpace::Build_Dof_TrueDof_Matrix() const // matrix P
|
||||
|
||||
if (P) { return; }
|
||||
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
if (!nd_strias)
|
||||
{
|
||||
// Safe to assume 1-1 correspondence between shared dofs
|
||||
@@ -1423,6 +1430,7 @@ const Operator *ParFiniteElementSpace::GetRestrictionOperator() const
|
||||
if (NRanks == 1)
|
||||
{
|
||||
R_transpose.reset(new IdentityOperator(GetTrueVSize()));
|
||||
Rconf = new IdentityOperator(GetTrueVSize());
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -1435,8 +1443,8 @@ const Operator *ParFiniteElementSpace::GetRestrictionOperator() const
|
||||
R_transpose.reset(
|
||||
new DeviceConformingProlongationOperator(*this, true));
|
||||
}
|
||||
Rconf = new TransposeOperator(*R_transpose);
|
||||
}
|
||||
Rconf = new TransposeOperator(*R_transpose);
|
||||
return Rconf;
|
||||
}
|
||||
else
|
||||
@@ -4487,13 +4495,6 @@ ParFiniteElementSpace::RebalanceMatrix(int old_ndofs,
|
||||
return M;
|
||||
}
|
||||
|
||||
|
||||
struct DerefDofMessage
|
||||
{
|
||||
std::vector<HYPRE_BigInt> dofs;
|
||||
MPI_Request request;
|
||||
};
|
||||
|
||||
HypreParMatrix*
|
||||
ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
|
||||
const Table* old_elem_dof,
|
||||
@@ -4536,7 +4537,13 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
|
||||
old_pncmesh->GetDerefinementTransforms();
|
||||
const Array<int> &old_ranks = old_pncmesh->GetDerefineOldRanks();
|
||||
|
||||
std::map<int, DerefDofMessage> messages;
|
||||
// key: other rank
|
||||
// value: send or recieve buffer
|
||||
std::map<int, std::vector<HYPRE_BigInt>> to_send;
|
||||
std::map<int, std::vector<HYPRE_BigInt>> to_recv;
|
||||
// key: index into dtrans.embeddings
|
||||
// value: [start, stop]
|
||||
std::unordered_map<int, std::array<size_t, 2>> recv_messages;
|
||||
|
||||
HYPRE_BigInt old_offset = HYPRE_AssumedPartitionCheck()
|
||||
? old_dof_offsets[0] : old_dof_offsets[MyRank];
|
||||
@@ -4556,30 +4563,46 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
|
||||
old_elem_dof->GetRow(k, dofs);
|
||||
DofsToVDofs(dofs, old_ndofs);
|
||||
|
||||
DerefDofMessage &msg = messages[k];
|
||||
msg.dofs.resize(dofs.Size());
|
||||
std::vector<HYPRE_BigInt>& send_buf = to_send[coarse_rank];
|
||||
auto pos = send_buf.size();
|
||||
send_buf.resize(pos + dofs.Size());
|
||||
for (int i = 0; i < dofs.Size(); i++)
|
||||
{
|
||||
msg.dofs[i] = old_offset + dofs[i];
|
||||
send_buf[pos + i] = old_offset + dofs[i];
|
||||
}
|
||||
|
||||
MPI_Isend(&msg.dofs[0], static_cast<int>(msg.dofs.size()), HYPRE_MPI_BIG_INT,
|
||||
coarse_rank, 291, MyComm, &msg.request);
|
||||
}
|
||||
else if (coarse_rank == MyRank && fine_rank != MyRank)
|
||||
{
|
||||
MFEM_ASSERT(emb.parent >= 0, "");
|
||||
Geometry::Type geom = mesh->GetElementBaseGeometry(emb.parent);
|
||||
|
||||
DerefDofMessage &msg = messages[k];
|
||||
msg.dofs.resize(ldof[geom]*vdim);
|
||||
|
||||
MPI_Irecv(&msg.dofs[0], ldof[geom]*vdim, HYPRE_MPI_BIG_INT,
|
||||
fine_rank, 291, MyComm, &msg.request);
|
||||
std::vector<HYPRE_BigInt>& recv_buf = to_recv[fine_rank];
|
||||
auto& msg = recv_messages[k];
|
||||
msg[0] = recv_buf.size();
|
||||
recv_buf.resize(recv_buf.size() + ldof[geom] * vdim);
|
||||
msg[1] = recv_buf.size();
|
||||
}
|
||||
// TODO: coalesce Isends/Irecvs to the same rank. Typically, on uniform
|
||||
// derefinement, there should be just one send to MyRank-1 and one recv
|
||||
// from MyRank+1
|
||||
}
|
||||
|
||||
// assume embedding orders are consistent (i.e. what we expect to receive
|
||||
// first from a given rank is sent first, etc.)
|
||||
std::vector<MPI_Request> requests;
|
||||
requests.reserve(to_send.size() + to_recv.size());
|
||||
// enqueue recvs
|
||||
for (auto &v : to_recv)
|
||||
{
|
||||
requests.emplace_back();
|
||||
MPI_Irecv(v.second.data(), v.second.size(), HYPRE_MPI_BIG_INT, v.first,
|
||||
MessageTag::DEREFINEMENT_MATRIX_CONSTRUCTION_DATA, MyComm,
|
||||
&requests.back());
|
||||
}
|
||||
// enqueue sends
|
||||
for (auto &v : to_send)
|
||||
{
|
||||
requests.emplace_back();
|
||||
MPI_Isend(v.second.data(), v.second.size(), HYPRE_MPI_BIG_INT, v.first,
|
||||
MessageTag::DEREFINEMENT_MATRIX_CONSTRUCTION_DATA, MyComm,
|
||||
&requests.back());
|
||||
}
|
||||
|
||||
DenseTensor localR[Geometry::NumGeom];
|
||||
@@ -4637,10 +4660,7 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
|
||||
diag->Finalize();
|
||||
|
||||
// wait for all sends/receives to complete
|
||||
for (auto it = messages.begin(); it != messages.end(); ++it)
|
||||
{
|
||||
MPI_Wait(&it->second.request, MPI_STATUS_IGNORE);
|
||||
}
|
||||
MPI_Waitall(requests.size(), requests.data(), MPI_STATUSES_IGNORE);
|
||||
|
||||
// create the off-diagonal part of the derefinement matrix
|
||||
SparseMatrix *offd = new SparseMatrix(ndofs*vdim, 1);
|
||||
@@ -4661,13 +4681,14 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
|
||||
|
||||
elem_dof->GetRow(emb.parent, dofs);
|
||||
|
||||
DerefDofMessage &msg = messages[k];
|
||||
MFEM_ASSERT(msg.dofs.size(), "");
|
||||
auto& odofs = to_recv.at(fine_rank);
|
||||
auto &msg = recv_messages[k];
|
||||
MFEM_ASSERT(msg[1] > msg[0], "");
|
||||
|
||||
for (int vd = 0; vd < vdim; vd++)
|
||||
{
|
||||
MFEM_ASSERT(ldof[geom], "");
|
||||
HYPRE_BigInt* remote_dofs = &msg.dofs[vd*ldof[geom]];
|
||||
HYPRE_BigInt *remote_dofs = odofs.data() + msg[0] + vd * ldof[geom];
|
||||
|
||||
for (int i = 0; i < lR.Height(); i++)
|
||||
{
|
||||
@@ -4694,7 +4715,6 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
|
||||
}
|
||||
}
|
||||
|
||||
messages.clear();
|
||||
offd->Finalize(0);
|
||||
offd->SetWidth(static_cast<int>(col_map.size()));
|
||||
|
||||
@@ -4946,8 +4966,13 @@ void ParFiniteElementSpace::Update(bool want_transform)
|
||||
|
||||
case Mesh::DEREFINE:
|
||||
{
|
||||
#if 0
|
||||
Th.Reset(ParallelDerefinementMatrix(old_ndofs, old_elem_dof,
|
||||
old_elem_fos));
|
||||
#else
|
||||
Th.Reset(new ParDerefineMatrixOp(*this, old_ndofs, old_elem_dof,
|
||||
old_elem_fos));
|
||||
#endif
|
||||
if (Nonconforming())
|
||||
{
|
||||
Th.SetOperatorOwner(false);
|
||||
|
||||
@@ -24,9 +24,12 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
struct ParDerefineMatrixOp;
|
||||
|
||||
/// Abstract parallel finite element space.
|
||||
class ParFiniteElementSpace : public FiniteElementSpace
|
||||
{
|
||||
friend struct ParDerefineMatrixOp;
|
||||
private:
|
||||
/// MPI data.
|
||||
MPI_Comm MyComm;
|
||||
|
||||
@@ -45,6 +45,8 @@ void ParLinearForm::MakeRef(ParFiniteElementSpace *pf, Vector &v, int v_offset)
|
||||
|
||||
void ParLinearForm::Assemble()
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
LinearForm::Assemble();
|
||||
|
||||
if (interior_face_integs.Size())
|
||||
|
||||
+10
-10
@@ -214,16 +214,16 @@ public:
|
||||
inline void QuadratureFunction::GetValues(
|
||||
int idx, Vector &values)
|
||||
{
|
||||
const int s_offset = qspace->offsets[idx];
|
||||
const int sl_size = qspace->offsets[idx+1] - s_offset;
|
||||
const int s_offset = qspace->Offset(idx);
|
||||
const int sl_size = qspace->Offset(idx + 1) - s_offset;
|
||||
values.MakeRef(*this, vdim*s_offset, vdim*sl_size);
|
||||
}
|
||||
|
||||
inline void QuadratureFunction::GetValues(
|
||||
int idx, Vector &values) const
|
||||
{
|
||||
const int s_offset = qspace->offsets[idx];
|
||||
const int sl_size = qspace->offsets[idx+1] - s_offset;
|
||||
const int s_offset = qspace->Offset(idx);
|
||||
const int sl_size = qspace->Offset(idx + 1) - s_offset;
|
||||
values.SetSize(vdim*sl_size);
|
||||
values.HostWrite();
|
||||
const real_t *q = HostRead() + vdim*s_offset;
|
||||
@@ -236,14 +236,14 @@ inline void QuadratureFunction::GetValues(
|
||||
inline void QuadratureFunction::GetValues(
|
||||
int idx, const int ip_num, Vector &values)
|
||||
{
|
||||
const int s_offset = qspace->offsets[idx] * vdim + ip_num * vdim;
|
||||
const int s_offset = qspace->Offset(idx) * vdim + ip_num * vdim;
|
||||
values.MakeRef(*this, s_offset, vdim);
|
||||
}
|
||||
|
||||
inline void QuadratureFunction::GetValues(
|
||||
int idx, const int ip_num, Vector &values) const
|
||||
{
|
||||
const int s_offset = qspace->offsets[idx] * vdim + ip_num * vdim;
|
||||
const int s_offset = qspace->Offset(idx) * vdim + ip_num * vdim;
|
||||
values.SetSize(vdim);
|
||||
values.HostWrite();
|
||||
const real_t *q = HostRead() + s_offset;
|
||||
@@ -256,8 +256,8 @@ inline void QuadratureFunction::GetValues(
|
||||
inline void QuadratureFunction::GetValues(
|
||||
int idx, DenseMatrix &values)
|
||||
{
|
||||
const int s_offset = qspace->offsets[idx];
|
||||
const int sl_size = qspace->offsets[idx+1] - s_offset;
|
||||
const int s_offset = qspace->Offset(idx);
|
||||
const int sl_size = qspace->Offset(idx + 1) - s_offset;
|
||||
// Make the values matrix memory an alias of the quadrature function memory
|
||||
Memory<real_t> &values_mem = values.GetMemory();
|
||||
values_mem.Delete();
|
||||
@@ -268,8 +268,8 @@ inline void QuadratureFunction::GetValues(
|
||||
inline void QuadratureFunction::GetValues(
|
||||
int idx, DenseMatrix &values) const
|
||||
{
|
||||
const int s_offset = qspace->offsets[idx];
|
||||
const int sl_size = qspace->offsets[idx+1] - s_offset;
|
||||
const int s_offset = qspace->Offset(idx);
|
||||
const int sl_size = qspace->Offset(idx + 1) - s_offset;
|
||||
values.SetSize(vdim, sl_size);
|
||||
values.HostWrite();
|
||||
const real_t *q = HostRead() + vdim*s_offset;
|
||||
|
||||
+25
-8
@@ -96,17 +96,33 @@ void QuadratureSpaceBase::Integrate(VectorCoefficient &coeff,
|
||||
|
||||
void QuadratureSpace::ConstructOffsets()
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
const int num_elem = mesh.GetNE();
|
||||
offsets.SetSize(num_elem + 1);
|
||||
int offset = 0;
|
||||
for (int i = 0; i < num_elem; i++)
|
||||
ne = num_elem;
|
||||
|
||||
if (mesh.GetNumGeometries(mesh.Dimension()) == 1)
|
||||
{
|
||||
offsets[i] = offset;
|
||||
int geom = mesh.GetElementBaseGeometry(i);
|
||||
MFEM_ASSERT(int_rule[geom] != NULL, "Missing integration rule.");
|
||||
offset += int_rule[geom]->GetNPoints();
|
||||
Array<Geometry::Type> geoms;
|
||||
mesh.GetGeometries(mesh.Dimension(), geoms);
|
||||
offsets.SetSize(1);
|
||||
offsets.HostWrite();
|
||||
offsets[0] = int_rule[geoms[0]]->GetNPoints();
|
||||
size = num_elem * offsets[0];
|
||||
}
|
||||
else
|
||||
{
|
||||
offsets.SetSize(num_elem + 1);
|
||||
int offset = 0;
|
||||
for (int i = 0; i < num_elem; i++)
|
||||
{
|
||||
offsets[i] = offset;
|
||||
const Geometry::Type geom = mesh.GetElementBaseGeometry(i);
|
||||
MFEM_ASSERT(int_rule[geom] != NULL, "Missing integration rule.");
|
||||
offset += int_rule[geom]->GetNPoints();
|
||||
}
|
||||
offsets[num_elem] = offset;
|
||||
size = offsets.Last();
|
||||
}
|
||||
offsets[num_elem] = size = offset;
|
||||
}
|
||||
|
||||
void QuadratureSpace::Construct()
|
||||
@@ -188,6 +204,7 @@ void FaceQuadratureSpace::ConstructOffsets()
|
||||
{
|
||||
face_indices.SetSize(num_faces);
|
||||
offsets.SetSize(num_faces + 1);
|
||||
ne = num_faces;
|
||||
int offset = 0;
|
||||
int f_idx = 0;
|
||||
for (int i = 0; i < mesh.GetNumFacesWithGhost(); i++)
|
||||
|
||||
+26
-4
@@ -30,13 +30,17 @@ protected:
|
||||
Mesh &mesh; ///< The underlying mesh.
|
||||
int order; ///< The order of integration rule.
|
||||
int size; ///< Total number of quadrature points.
|
||||
int ne; ///< Actual number of entities
|
||||
mutable Vector weights; ///< Integration weights.
|
||||
mutable long nodes_sequence = 0; ///< Nodes counter for cache invalidation.
|
||||
|
||||
/// @brief Entity quadrature point offset array, of size num_entities + 1.
|
||||
/// @brief Entity quadrature point offset array.
|
||||
///
|
||||
/// Supports a constant compression scheme for meshes which have a single
|
||||
/// geometry type. When compressed, will have a single value. The true offset
|
||||
/// can be computed as i * offsets[0], where i is the entity index. Otherwise
|
||||
/// has size num_entities + 1.
|
||||
///
|
||||
/// The quadrature point values for entity i are stored in the indices between
|
||||
/// offsets[i] and offsets[i+1].
|
||||
Array<int> offsets;
|
||||
/// The quadrature rules used for each geometry type.
|
||||
const IntegrationRule *int_rule[Geometry::NumGeom];
|
||||
@@ -59,6 +63,24 @@ protected:
|
||||
void ConstructWeights() const;
|
||||
|
||||
public:
|
||||
/// @brief Gets the offset for a given entity @a idx.
|
||||
///
|
||||
/// The quadrature point values for entity i are stored in the indices
|
||||
/// between Offset(i) and Offset(i+1)
|
||||
int Offset(int idx) const
|
||||
{
|
||||
return (offsets.Size() == 1) ? (idx * offsets[0]) : offsets[idx];
|
||||
}
|
||||
|
||||
/// @brief Entity quadrature point offset array.
|
||||
///
|
||||
/// Supports a constant compression scheme for meshes which have a single
|
||||
/// geometry type. When compressed, will have a single value. The true offset
|
||||
/// can be computed as i * offsets[0], where i is the entity index. Otherwise
|
||||
/// has size num_entities + 1.
|
||||
///
|
||||
const Array<int> &Offsets() const { return offsets; }
|
||||
|
||||
/// Return the total number of quadrature points.
|
||||
int GetSize() const { return size; }
|
||||
|
||||
@@ -66,7 +88,7 @@ public:
|
||||
int GetOrder() const { return order; }
|
||||
|
||||
/// Return the number of entities.
|
||||
int GetNE() const { return offsets.Size() - 1; }
|
||||
int GetNE() const { return ne; }
|
||||
|
||||
/// Returns the mesh.
|
||||
inline Mesh *GetMesh() const { return &mesh; }
|
||||
|
||||
@@ -503,6 +503,7 @@ void QuadratureInterpolator::Mult(const Vector &e_vec,
|
||||
Vector &q_der,
|
||||
Vector &q_det) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
using namespace internal::quadrature_interpolator;
|
||||
|
||||
const int ne = fespace->GetNE();
|
||||
|
||||
+6
-1
@@ -25,7 +25,7 @@ namespace mfem
|
||||
|
||||
ElementRestriction::ElementRestriction(const FiniteElementSpace &f,
|
||||
ElementDofOrdering e_ordering)
|
||||
: fes(f),
|
||||
: fes((MFEM_PERF_BEGIN(_MFEM_FUNC_NAME), f)),
|
||||
ne(fes.GetNE()),
|
||||
vdim(fes.GetVDim()),
|
||||
byvdim(fes.GetOrdering() == Ordering::byVDIM),
|
||||
@@ -104,10 +104,13 @@ ElementRestriction::ElementRestriction(const FiniteElementSpace &f,
|
||||
offsets[i] = offsets[i - 1];
|
||||
}
|
||||
offsets[0] = 0;
|
||||
MFEM_PERF_END(_MFEM_FUNC_NAME);
|
||||
}
|
||||
|
||||
void ElementRestriction::Mult(const Vector& x, Vector& y) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
// Assumes all elements have the same number of dofs
|
||||
const int nd = dof;
|
||||
const int vd = vdim;
|
||||
@@ -152,6 +155,8 @@ void ElementRestriction::AbsMult(const Vector& x, Vector& y) const
|
||||
template <bool ADD>
|
||||
void ElementRestriction::TAddMultTranspose(const Vector& x, Vector& y) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
// Assumes all elements have the same number of dofs
|
||||
const int nd = dof;
|
||||
const int vd = vdim;
|
||||
|
||||
+15
-7
@@ -2328,6 +2328,8 @@ static void SmemProlongation3D(const int NE,
|
||||
const Vector& localL, Vector& localH,
|
||||
const Array<real_t> &b, const Vector& mask)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
auto u_lo = Reshape(localL.Read(), DLO, DLO, DLO, NE);
|
||||
auto u_hi = Reshape(localH.Write(), DHI, DHI, DHI, NE);
|
||||
auto d_b = Reshape(b.Read(), DHI, DLO);
|
||||
@@ -2523,6 +2525,8 @@ static void SmemProlongationTranspose3D(
|
||||
const int NE, const Vector& localH, Vector& localL,
|
||||
const Array<real_t>& bt, const Vector& mask)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
auto u_h = Reshape(localH.Read(), DHI, DHI, DHI, NE);
|
||||
auto u_l = Reshape(localL.Write(), DLO, DLO, DLO, NE);
|
||||
auto d_bt = Reshape(bt.Read(), DLO, DHI);
|
||||
@@ -2662,6 +2666,7 @@ void ProlongationTranspose3D(const int NE, const int D1D, const int Q1D,
|
||||
void TensorProductPRefinementTransferOperator::Mult(const Vector& x,
|
||||
Vector& y) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
using namespace TransferKernels;
|
||||
|
||||
if (lFESpace.GetMesh()->GetNE() == 0)
|
||||
@@ -2704,6 +2709,7 @@ void TensorProductPRefinementTransferOperator::Mult(const Vector& x,
|
||||
void TensorProductPRefinementTransferOperator::MultTranspose(const Vector& x,
|
||||
Vector& y) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
using namespace TransferKernels;
|
||||
|
||||
if (lFESpace.GetMesh()->GetNE() == 0)
|
||||
@@ -2754,20 +2760,20 @@ TrueTransferOperator::TrueTransferOperator(const FiniteElementSpace& lFESpace_,
|
||||
|
||||
P = lFESpace.GetProlongationMatrix();
|
||||
R = hFESpace.IsVariableOrder() ? hFESpace.GetHpRestrictionMatrix() :
|
||||
hFESpace.GetRestrictionMatrix();
|
||||
hFESpace.GetRestrictionOperator();
|
||||
|
||||
// P and R can be both null
|
||||
// P can be null and R not null
|
||||
// If P is not null it is assumed that R is not null as well
|
||||
if (P) { MFEM_VERIFY(R, "Both P and R have to be not NULL") }
|
||||
|
||||
if (P)
|
||||
if (!IsIdentityProlongation(P))
|
||||
{
|
||||
tmpL.SetSize(lFESpace_.GetVSize());
|
||||
tmpH.SetSize(hFESpace_.GetVSize());
|
||||
}
|
||||
// P can be null and R not null
|
||||
else if (R)
|
||||
else if (!IsIdentityProlongation(R))
|
||||
{
|
||||
tmpH.SetSize(hFESpace_.GetVSize());
|
||||
}
|
||||
@@ -2780,13 +2786,14 @@ TrueTransferOperator::~TrueTransferOperator()
|
||||
|
||||
void TrueTransferOperator::Mult(const Vector& x, Vector& y) const
|
||||
{
|
||||
if (P)
|
||||
MFEM_PERF_FUNCTION;
|
||||
if (!IsIdentityProlongation(P))
|
||||
{
|
||||
P->Mult(x, tmpL);
|
||||
localTransferOperator->Mult(tmpL, tmpH);
|
||||
R->Mult(tmpH, y);
|
||||
}
|
||||
else if (R)
|
||||
else if (!IsIdentityProlongation(R))
|
||||
{
|
||||
localTransferOperator->Mult(x, tmpH);
|
||||
R->Mult(tmpH, y);
|
||||
@@ -2799,13 +2806,14 @@ void TrueTransferOperator::Mult(const Vector& x, Vector& y) const
|
||||
|
||||
void TrueTransferOperator::MultTranspose(const Vector& x, Vector& y) const
|
||||
{
|
||||
if (P)
|
||||
MFEM_PERF_FUNCTION;
|
||||
if (!IsIdentityProlongation(P))
|
||||
{
|
||||
R->MultTranspose(x, tmpH);
|
||||
localTransferOperator->MultTranspose(tmpH, tmpL);
|
||||
P->MultTranspose(tmpL, y);
|
||||
}
|
||||
else if (R)
|
||||
else if (!IsIdentityProlongation(R))
|
||||
{
|
||||
R->MultTranspose(x, tmpH);
|
||||
localTransferOperator->MultTranspose(tmpH, y);
|
||||
|
||||
+1
-1
@@ -639,7 +639,7 @@ private:
|
||||
const FiniteElementSpace& lFESpace;
|
||||
const FiniteElementSpace& hFESpace;
|
||||
const Operator * P = nullptr;
|
||||
const SparseMatrix * R = nullptr;
|
||||
const Operator * R = nullptr;
|
||||
TransferOperator* localTransferOperator;
|
||||
mutable Vector tmpL;
|
||||
mutable Vector tmpH;
|
||||
|
||||
@@ -98,7 +98,7 @@ struct ScopeAnnotation
|
||||
#else // #ifdef MFEM_USE_CALIPER
|
||||
|
||||
#define MFEM_PERF_FUNCTION
|
||||
#define MFEM_PERF_BEGIN(s)
|
||||
#define MFEM_PERF_BEGIN(s) ((void)(0))
|
||||
#define MFEM_PERF_END(s)
|
||||
#define MFEM_PERF_SCOPE(name)
|
||||
|
||||
|
||||
@@ -14,7 +14,7 @@
|
||||
|
||||
#include "../config/config.hpp"
|
||||
|
||||
#ifdef MFEM_USE_CUDA
|
||||
#if defined(MFEM_USE_CUDA) && defined(__CUDACC__)
|
||||
#include <cusparse.h>
|
||||
#include <library_types.h>
|
||||
#include <cuda_runtime.h>
|
||||
@@ -22,7 +22,7 @@
|
||||
#endif
|
||||
#include "cuda.hpp"
|
||||
|
||||
#ifdef MFEM_USE_HIP
|
||||
#if defined(MFEM_USE_HIP) && defined(__HIP__)
|
||||
#include <hip/hip_runtime.h>
|
||||
#endif
|
||||
#include "hip.hpp"
|
||||
@@ -43,7 +43,7 @@
|
||||
#endif
|
||||
#endif
|
||||
|
||||
#if !(defined(MFEM_USE_CUDA) || defined(MFEM_USE_HIP))
|
||||
#if !defined(MFEM_USE_CUDA_OR_HIP)
|
||||
#define MFEM_DEVICE
|
||||
#define MFEM_HOST
|
||||
#define MFEM_LAMBDA
|
||||
@@ -55,7 +55,7 @@
|
||||
#endif
|
||||
|
||||
#if !((defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__)) || \
|
||||
(defined(MFEM_USE_HIP) && defined(__HIP_DEVICE_COMPILE__)))
|
||||
(defined(MFEM_USE_HIP) && defined(__HIP_DEVICE_COMPILE__)))
|
||||
#define MFEM_SHARED
|
||||
#define MFEM_SYNC_THREAD
|
||||
#define MFEM_BLOCK_ID(k) 0
|
||||
@@ -66,7 +66,7 @@
|
||||
#endif
|
||||
|
||||
// 'double' and 'float' atomicAdd implementation for previous versions of CUDA
|
||||
#if defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__) && __CUDA_ARCH__ < 600
|
||||
#if defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__) && (__CUDA_ARCH__ < 600)
|
||||
MFEM_DEVICE inline mfem::real_t atomicAdd(mfem::real_t *add, mfem::real_t val)
|
||||
{
|
||||
unsigned long long int *ptr = (unsigned long long int *) add;
|
||||
@@ -94,7 +94,7 @@ template <typename T>
|
||||
MFEM_HOST_DEVICE T AtomicAdd(T &add, const T val)
|
||||
{
|
||||
#if ((defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__)) || \
|
||||
(defined(MFEM_USE_HIP) && defined(__HIP_DEVICE_COMPILE__)))
|
||||
(defined(MFEM_USE_HIP) && defined(__HIP_DEVICE_COMPILE__)))
|
||||
return atomicAdd(&add,val);
|
||||
#else
|
||||
T old = add;
|
||||
|
||||
@@ -347,13 +347,23 @@ void GroupTopology::Swap(GroupTopology &other)
|
||||
mfem::Swap(group_mgroup, other.group_mgroup);
|
||||
}
|
||||
|
||||
/// \cond DO_NOT_DOCUMENT
|
||||
// Initialize the static mpi_type for the specializations of MPITypeMap:
|
||||
const MPI_Datatype MPITypeMap<bool>::mpi_type = MFEM_MPI_CXX_BOOL;
|
||||
const MPI_Datatype MPITypeMap<char>::mpi_type = MPI_CHAR;
|
||||
const MPI_Datatype MPITypeMap<unsigned char>::mpi_type = MPI_UNSIGNED_CHAR;
|
||||
const MPI_Datatype MPITypeMap<short>::mpi_type = MPI_SHORT;
|
||||
const MPI_Datatype MPITypeMap<unsigned short>::mpi_type = MPI_UNSIGNED_SHORT;
|
||||
const MPI_Datatype MPITypeMap<int>::mpi_type = MPI_INT;
|
||||
const MPI_Datatype MPITypeMap<unsigned int>::mpi_type = MPI_UNSIGNED;
|
||||
const MPI_Datatype MPITypeMap<long>::mpi_type = MPI_LONG;
|
||||
const MPI_Datatype MPITypeMap<unsigned long>::mpi_type = MPI_UNSIGNED_LONG;
|
||||
const MPI_Datatype MPITypeMap<long long>::mpi_type = MPI_LONG_LONG;
|
||||
const MPI_Datatype MPITypeMap<unsigned long long>::mpi_type =
|
||||
MPI_UNSIGNED_LONG_LONG;
|
||||
const MPI_Datatype MPITypeMap<float>::mpi_type = MPI_FLOAT;
|
||||
const MPI_Datatype MPITypeMap<double>::mpi_type = MPI_DOUBLE;
|
||||
const MPI_Datatype MPITypeMap<int64_t>::mpi_type = MPI_INT64_T;
|
||||
const MPI_Datatype MPITypeMap<uint64_t>::mpi_type = MPI_UINT64_T;
|
||||
|
||||
/// \endcond DO_NOT_DOCUMENT
|
||||
|
||||
GroupCommunicator::GroupCommunicator(const GroupTopology >, Mode m)
|
||||
: gtopo(gt), mode(m)
|
||||
|
||||
+56
-17
@@ -421,16 +421,24 @@ public:
|
||||
~GroupCommunicator();
|
||||
};
|
||||
|
||||
/// General MPI message tags used by MFEM
|
||||
enum MessageTag
|
||||
{
|
||||
DEREFINEMENT_MATRIX_CONSTRUCTION_DATA =
|
||||
291, /// ParFiniteElementSpace ParallelDerefinementMatrix and
|
||||
/// ParDerefineMatrixOp
|
||||
};
|
||||
|
||||
enum VarMessageTag
|
||||
{
|
||||
NEIGHBOR_ELEMENT_RANK_VM, ///< NeighborElementRankMessage
|
||||
NEIGHBOR_ORDER_VM, ///< NeighborOrderMessage
|
||||
NEIGHBOR_DEREFINEMENT_VM, ///< NeighborDerefinementMessage
|
||||
NEIGHBOR_REFINEMENT_VM, ///< NeighborRefinementMessage
|
||||
NEIGHBOR_PREFINEMENT_VM, ///< NeighborPRefinementMessage
|
||||
NEIGHBOR_ROW_VM, ///< NeighborRowMessage
|
||||
REBALANCE_VM, ///< RebalanceMessage
|
||||
REBALANCE_DOF_VM ///< RebalanceDofMessage
|
||||
NEIGHBOR_ELEMENT_RANK_VM, ///< NeighborElementRankMessage
|
||||
NEIGHBOR_ORDER_VM, ///< NeighborOrderMessage
|
||||
NEIGHBOR_DEREFINEMENT_VM, ///< NeighborDerefinementMessage
|
||||
NEIGHBOR_REFINEMENT_VM, ///< NeighborRefinementMessage
|
||||
NEIGHBOR_PREFINEMENT_VM, ///< NeighborPRefinementMessage
|
||||
NEIGHBOR_ROW_VM, ///< NeighborRowMessage
|
||||
REBALANCE_VM, ///< RebalanceMessage
|
||||
REBALANCE_DOF_VM, ///< RebalanceDofMessage
|
||||
};
|
||||
|
||||
/// \brief Variable-length MPI message containing unspecific binary data.
|
||||
@@ -595,10 +603,50 @@ protected:
|
||||
template <typename Type> struct MPITypeMap;
|
||||
|
||||
// Specializations of MPITypeMap; mpi_type initialized in communication.cpp:
|
||||
template<> struct MPITypeMap<bool>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
template<> struct MPITypeMap<char>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
template<> struct MPITypeMap<unsigned char>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
template<> struct MPITypeMap<short>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
template<> struct MPITypeMap<unsigned short>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
template<> struct MPITypeMap<int>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
template<> struct MPITypeMap<unsigned int>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
template<> struct MPITypeMap<long>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
template<> struct MPITypeMap<unsigned long>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
template<> struct MPITypeMap<long long>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
template<> struct MPITypeMap<unsigned long long>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
template<> struct MPITypeMap<double>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
@@ -607,15 +655,6 @@ template<> struct MPITypeMap<float>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
template<> struct MPITypeMap<int64_t>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
template<> struct MPITypeMap<uint64_t>
|
||||
{
|
||||
static MFEM_EXPORT const MPI_Datatype mpi_type;
|
||||
};
|
||||
|
||||
|
||||
/** Reorder MPI ranks to follow the Z-curve within the physical machine topology
|
||||
(provided that functions to query physical node coordinates are available).
|
||||
|
||||
+1
-1
@@ -24,7 +24,7 @@ void mfem_cuda_error(cudaError_t err, const char *expr, const char *func,
|
||||
const char *file, int line)
|
||||
{
|
||||
mfem::err << "\n\nCUDA error: (" << expr << ") failed with error:\n --> "
|
||||
<< cudaGetErrorString(err)
|
||||
<< cudaGetErrorString(err) << " [code: " << (int)err << ']'
|
||||
<< "\n ... in function: " << func
|
||||
<< "\n ... in file: " << file << ':' << line << '\n';
|
||||
mfem_error();
|
||||
|
||||
+5
-5
@@ -18,7 +18,7 @@
|
||||
// CUDA block size used by MFEM.
|
||||
#define MFEM_CUDA_BLOCKS 256
|
||||
|
||||
#ifdef MFEM_USE_CUDA
|
||||
#if defined(MFEM_USE_CUDA) && defined(__CUDACC__)
|
||||
#define MFEM_USE_CUDA_OR_HIP
|
||||
#define MFEM_DEVICE __device__
|
||||
#define MFEM_HOST __host__
|
||||
@@ -37,10 +37,9 @@
|
||||
__FILE__, __LINE__); \
|
||||
} \
|
||||
} while (0)
|
||||
#endif // MFEM_USE_CUDA
|
||||
|
||||
// Define the MFEM inner threading macros
|
||||
#if defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__)
|
||||
#if defined(__CUDA_ARCH__)
|
||||
#define MFEM_SHARED __shared__
|
||||
#define MFEM_SYNC_THREAD __syncthreads()
|
||||
#define MFEM_BLOCK_ID(k) blockIdx.k
|
||||
@@ -48,12 +47,13 @@
|
||||
#define MFEM_THREAD_SIZE(k) blockDim.k
|
||||
#define MFEM_FOREACH_THREAD(i,k,N) for(int i=threadIdx.k; i<N; i+=blockDim.k)
|
||||
#define MFEM_FOREACH_THREAD_DIRECT(i,k,N) if(const int i=threadIdx.k; i<N)
|
||||
#endif
|
||||
#endif // defined(__CUDA_ARCH__)
|
||||
#endif // defined(MFEM_USE_CUDA) && defined(__CUDACC__)
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
#ifdef MFEM_USE_CUDA
|
||||
#if defined(MFEM_USE_CUDA) && defined(__CUDACC__)
|
||||
// Function used by the macro MFEM_GPU_CHECK.
|
||||
void mfem_cuda_error(cudaError_t err, const char *expr, const char *func,
|
||||
const char *file, int line);
|
||||
|
||||
+1
-1
@@ -631,7 +631,7 @@ void Device::Setup(const std::string &device_option, const int device_id)
|
||||
if (Allows(Backend::DEBUG_DEVICE)) { ngpu = 1; }
|
||||
}
|
||||
|
||||
MemoryType Device::QueryMemoryType(void *ptr)
|
||||
MemoryType Device::QueryMemoryType(const void* ptr)
|
||||
{
|
||||
// from HYPRE's hypre_GetPointerLocation
|
||||
MemoryType res = MemoryType::HOST;
|
||||
|
||||
+3
-3
@@ -297,9 +297,9 @@ public:
|
||||
/// Get the status of GPU-aware MPI flag.
|
||||
static bool GetGPUAwareMPI() { return Get().mpi_gpu_aware; }
|
||||
|
||||
/** @brief Query the device driver for what memory type a given @a ptr is
|
||||
allocated with. */
|
||||
static MemoryType QueryMemoryType(void *ptr);
|
||||
/** Query the device driver for what memory type a given @a ptr is allocated
|
||||
* with. */
|
||||
static MemoryType QueryMemoryType(const void* ptr);
|
||||
|
||||
/** @brief The number of hardware compute units/streaming multiprocessors
|
||||
available on a given compute device @a device_id. */
|
||||
|
||||
+1
-1
@@ -176,7 +176,7 @@ __device__ void abort_msg(T & msg)
|
||||
printf(__VA_ARGS__); \
|
||||
asm("trap;"); \
|
||||
}
|
||||
#elif defined(MFEM_USE_HIP)
|
||||
#elif defined(__HIP_DEVICE_COMPILE__)
|
||||
#define MFEM_ABORT_KERNEL(...) \
|
||||
{ \
|
||||
printf(__VA_ARGS__); \
|
||||
|
||||
+171
-12
@@ -158,8 +158,8 @@ private:
|
||||
#define MFEM_PRAGMA(X) _Pragma(#X)
|
||||
|
||||
// MFEM_UNROLL pragma macro that can be used inside MFEM_FORALL macros.
|
||||
#if defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__)
|
||||
#ifdef __NVCC__
|
||||
#if defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__) // Clang cuda or nvcc
|
||||
#ifdef __NVCC__ // nvcc specifically
|
||||
#define MFEM_UNROLL(N) MFEM_PRAGMA(unroll(N))
|
||||
#else // Assuming Clang CUDA
|
||||
#define MFEM_UNROLL(N) MFEM_PRAGMA(unroll N)
|
||||
@@ -169,12 +169,12 @@ private:
|
||||
#endif
|
||||
|
||||
// MFEM_GPU_FORALL: "parallel for" executed with CUDA or HIP based on the MFEM
|
||||
// build-time configuration (MFEM_USE_CUDA or MFEM_USE_HIP). If neither CUDA nor
|
||||
// HIP is enabled, this macro is a no-op.
|
||||
#if defined(MFEM_USE_CUDA)
|
||||
// build-time configuration (MFEM_USE_CUDA or MFEM_USE_HIP), and if compiling
|
||||
// with CUDA/HIP language. Otherwise, this macro is a no-op.
|
||||
#if defined(MFEM_USE_CUDA) && defined(__CUDACC__)
|
||||
#define MFEM_GPU_FORALL(i, N,...) CuWrap1D(N, [=] MFEM_DEVICE \
|
||||
(int i) {__VA_ARGS__})
|
||||
#elif defined(MFEM_USE_HIP)
|
||||
#elif defined(MFEM_USE_HIP) && defined(__HIP__)
|
||||
#define MFEM_GPU_FORALL(i, N,...) HipWrap1D(N, [=] MFEM_DEVICE \
|
||||
(int i) {__VA_ARGS__})
|
||||
#else
|
||||
@@ -225,6 +225,52 @@ void OmpWrap(const int N, HBODY &&h_body)
|
||||
#endif
|
||||
}
|
||||
|
||||
template <typename HBODY>
|
||||
void OmpWrap2D(const int Nx, const int Ny, HBODY &&h_body)
|
||||
{
|
||||
#ifdef MFEM_USE_OPENMP
|
||||
// requires OpenMP 3.1
|
||||
#pragma omp parallel for collapse(2)
|
||||
for (int j = 0; j < Ny; j++)
|
||||
{
|
||||
for (int i = 0; i < Nx; i++)
|
||||
{
|
||||
h_body(i, j);
|
||||
}
|
||||
}
|
||||
#else
|
||||
MFEM_CONTRACT_VAR(Nx);
|
||||
MFEM_CONTRACT_VAR(Ny);
|
||||
MFEM_CONTRACT_VAR(h_body);
|
||||
MFEM_ABORT("OpenMP requested for MFEM but OpenMP is not enabled!");
|
||||
#endif
|
||||
}
|
||||
|
||||
template <typename HBODY>
|
||||
void OmpWrap3D(const int Nx, const int Ny, const int Nz, HBODY &&h_body)
|
||||
{
|
||||
#ifdef MFEM_USE_OPENMP
|
||||
// requires OpenMP 3.1
|
||||
#pragma omp parallel for collapse(3)
|
||||
for (int k = 0; k < Nz; k++)
|
||||
{
|
||||
for (int j = 0; j < Ny; j++)
|
||||
{
|
||||
for (int i = 0; i < Nx; i++)
|
||||
{
|
||||
h_body(i, j, k);
|
||||
}
|
||||
}
|
||||
}
|
||||
#else
|
||||
MFEM_CONTRACT_VAR(Nx);
|
||||
MFEM_CONTRACT_VAR(Ny);
|
||||
MFEM_CONTRACT_VAR(Nz);
|
||||
MFEM_CONTRACT_VAR(h_body);
|
||||
MFEM_ABORT("OpenMP requested for MFEM but OpenMP is not enabled!");
|
||||
#endif
|
||||
}
|
||||
|
||||
|
||||
/// RAJA Cuda and Hip backends
|
||||
#if defined(MFEM_USE_RAJA) && defined(RAJA_ENABLE_CUDA)
|
||||
@@ -454,6 +500,42 @@ void RajaOmpWrap(const int N, HBODY &&h_body)
|
||||
RAJA::forall<RAJA::omp_parallel_for_exec>(RAJA::RangeSegment(0,N), h_body);
|
||||
}
|
||||
|
||||
template <typename HBODY>
|
||||
void RajaOmpWrap2D(const int Nx, const int Ny, HBODY &&h_body)
|
||||
{
|
||||
using omp_launch_policy = RAJA::LaunchPolicy<RAJA::omp_launch_t>;
|
||||
using global_thread_xy = RAJA::LoopPolicy<RAJA::omp_for_exec>;
|
||||
RAJA::RangeSegment xrange(0, Nx);
|
||||
RAJA::RangeSegment yrange(0, Ny);
|
||||
RAJA::launch<omp_launch_policy>(RAJA::ExecPlace::HOST, RAJA::LaunchParams(),
|
||||
[=](RAJA::LaunchContext ctx)
|
||||
{
|
||||
// contiguous in x
|
||||
RAJA::expt::loop<global_thread_xy>(ctx, xrange, yrange, [&](int i, int j)
|
||||
{
|
||||
h_body(i, j);
|
||||
});
|
||||
});
|
||||
}
|
||||
|
||||
template <typename HBODY>
|
||||
void RajaOmpWrap3D(const int Nx, const int Ny, const int Nz, HBODY &&h_body)
|
||||
{
|
||||
using omp_launch_policy = RAJA::LaunchPolicy<RAJA::omp_launch_t>;
|
||||
using global_thread_xyz = RAJA::LoopPolicy<RAJA::omp_for_exec>;
|
||||
RAJA::RangeSegment xrange(0, Nx);
|
||||
RAJA::RangeSegment yrange(0, Ny);
|
||||
RAJA::RangeSegment zrange(0, Nz);
|
||||
RAJA::launch<omp_launch_policy>(RAJA::ExecPlace::HOST, RAJA::LaunchParams(),
|
||||
[=](RAJA::LaunchContext ctx)
|
||||
{
|
||||
// contiguous in x
|
||||
RAJA::expt::loop<global_thread_xyz>(ctx, xrange, yrange, zrange,
|
||||
[&](int i, int j, int k)
|
||||
{ h_body(i, j, k); });
|
||||
});
|
||||
}
|
||||
|
||||
#endif
|
||||
|
||||
|
||||
@@ -481,7 +563,7 @@ void RajaSeqWrap(const int N, HBODY &&h_body)
|
||||
|
||||
|
||||
/// CUDA backend
|
||||
#ifdef MFEM_USE_CUDA
|
||||
#if defined(MFEM_USE_CUDA) && defined(__CUDACC__)
|
||||
|
||||
template <typename BODY> __global__ static
|
||||
void CuKernel1D(const int N, BODY body)
|
||||
@@ -573,11 +655,11 @@ struct CuWrap<3>
|
||||
}
|
||||
};
|
||||
|
||||
#endif // MFEM_USE_CUDA
|
||||
#endif // defined(MFEM_USE_CUDA) && defined(__CUDACC__)
|
||||
|
||||
|
||||
/// HIP backend
|
||||
#ifdef MFEM_USE_HIP
|
||||
#if defined(MFEM_USE_HIP) && defined(__HIP__)
|
||||
|
||||
template <typename BODY> __global__ static
|
||||
void HipKernel1D(const int N, BODY body)
|
||||
@@ -668,7 +750,7 @@ struct HipWrap<3>
|
||||
}
|
||||
};
|
||||
|
||||
#endif // MFEM_USE_HIP
|
||||
#endif // defined(MFEM_USE_HIP) && defined(__HIP__)
|
||||
|
||||
|
||||
/// The forall kernel body wrapper
|
||||
@@ -701,7 +783,7 @@ inline void ForallWrap(const bool use_dev, const int N,
|
||||
}
|
||||
#endif
|
||||
|
||||
#ifdef MFEM_USE_CUDA
|
||||
#if defined(MFEM_USE_CUDA) && defined(__CUDACC__)
|
||||
// If Backend::CUDA is allowed, use it
|
||||
if (Device::Allows(Backend::CUDA))
|
||||
{
|
||||
@@ -709,7 +791,7 @@ inline void ForallWrap(const bool use_dev, const int N,
|
||||
}
|
||||
#endif
|
||||
|
||||
#ifdef MFEM_USE_HIP
|
||||
#if defined(MFEM_USE_HIP) && defined(__HIP__)
|
||||
// If Backend::HIP is allowed, use it
|
||||
if (Device::Allows(Backend::HIP))
|
||||
{
|
||||
@@ -753,6 +835,83 @@ inline void ForallWrap(const bool use_dev, const int N, lambda &&body,
|
||||
template<typename lambda>
|
||||
inline void forall(int N, lambda &&body) { ForallWrap<1>(true, N, body); }
|
||||
|
||||
template<typename lambda>
|
||||
inline void forall(int Nx, int Ny, lambda &&body)
|
||||
{
|
||||
if (Device::Allows(Backend::DEVICE_MASK))
|
||||
{
|
||||
forall(Nx * Ny, [=] MFEM_HOST_DEVICE(int idx)
|
||||
{
|
||||
int j = idx / Nx;
|
||||
int i = idx % Nx;
|
||||
body(i, j);
|
||||
});
|
||||
}
|
||||
#if defined(MFEM_USE_RAJA) && defined(RAJA_ENABLE_OPENMP)
|
||||
else if (Device::Allows(Backend::RAJA_OMP))
|
||||
{
|
||||
return RajaOmpWrap2D(Nx, Ny, body);
|
||||
}
|
||||
#endif
|
||||
#ifdef MFEM_USE_OPENMP
|
||||
else if (Device::Allows(Backend::OMP))
|
||||
{
|
||||
return OmpWrap2D(Nx, Ny, body);
|
||||
}
|
||||
#endif
|
||||
else
|
||||
{
|
||||
for (int j = 0; j < Ny; ++j)
|
||||
{
|
||||
for (int i = 0; i < Nx; ++i)
|
||||
{
|
||||
body(i, j);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template<typename lambda>
|
||||
inline void forall(int Nx, int Ny, int Nz, lambda &&body)
|
||||
{
|
||||
if (Device::Allows(Backend::DEVICE_MASK))
|
||||
{
|
||||
forall(Nx * Ny * Nz, [=] MFEM_HOST_DEVICE(int idx)
|
||||
{
|
||||
int i = idx % Nx;
|
||||
int j = idx / Nx;
|
||||
int k = j / Ny;
|
||||
j = j % Ny;
|
||||
body(i, j, k);
|
||||
});
|
||||
}
|
||||
#if defined(MFEM_USE_RAJA) && defined(RAJA_ENABLE_OPENMP)
|
||||
else if (Device::Allows(Backend::RAJA_OMP))
|
||||
{
|
||||
return RajaOmpWrap3D(Nx, Ny, Nz, body);
|
||||
}
|
||||
#endif
|
||||
#ifdef MFEM_USE_OPENMP
|
||||
else if (Device::Allows(Backend::OMP))
|
||||
{
|
||||
return OmpWrap3D(Nx, Ny, Nz, body);
|
||||
}
|
||||
#endif
|
||||
else
|
||||
{
|
||||
for (int k = 0; k < Nz; ++k)
|
||||
{
|
||||
for (int j = 0; j < Ny; ++j)
|
||||
{
|
||||
for (int i = 0; i < Nx; ++i)
|
||||
{
|
||||
body(i, j, k);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template<typename lambda>
|
||||
inline void forall_switch(bool use_dev, int N, lambda &&body)
|
||||
{
|
||||
|
||||
+1
-1
@@ -24,7 +24,7 @@ void mfem_hip_error(hipError_t err, const char *expr, const char *func,
|
||||
const char *file, int line)
|
||||
{
|
||||
mfem::err << "\n\nHIP error: (" << expr << ") failed with error:\n --> "
|
||||
<< hipGetErrorString(err)
|
||||
<< hipGetErrorString(err) << " [code: " << (int)err << ']'
|
||||
<< "\n ... in function: " << func
|
||||
<< "\n ... in file: " << file << ':' << line << '\n';
|
||||
mfem_error();
|
||||
|
||||
+4
-4
@@ -18,7 +18,7 @@
|
||||
// HIP block size used by MFEM.
|
||||
#define MFEM_HIP_BLOCKS 256
|
||||
|
||||
#ifdef MFEM_USE_HIP
|
||||
#if defined(MFEM_USE_HIP) && defined(__HIP__)
|
||||
#define MFEM_USE_CUDA_OR_HIP
|
||||
#define MFEM_DEVICE __device__
|
||||
#define MFEM_HOST __host__
|
||||
@@ -37,10 +37,9 @@
|
||||
__FILE__, __LINE__); \
|
||||
} \
|
||||
} while (0)
|
||||
#endif // MFEM_USE_HIP
|
||||
|
||||
// Define the MFEM inner threading macros
|
||||
#if defined(MFEM_USE_HIP) && defined(__HIP_DEVICE_COMPILE__)
|
||||
#if defined(__HIP_DEVICE_COMPILE__)
|
||||
#define MFEM_SHARED __shared__
|
||||
#define MFEM_SYNC_THREAD __syncthreads()
|
||||
#define MFEM_BLOCK_ID(k) hipBlockIdx_ ##k
|
||||
@@ -50,7 +49,8 @@
|
||||
for(int i=hipThreadIdx_ ##k; i<N; i+=hipBlockDim_ ##k)
|
||||
#define MFEM_FOREACH_THREAD_DIRECT(i,k,N) \
|
||||
if(const int i=hipThreadIdx_ ##k; i<N)
|
||||
#endif
|
||||
#endif // defined(__HIP_DEVICE_COMPILE__)
|
||||
#endif // defined(MFEM_USE_HIP) && defined(__HIP__)
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
@@ -513,10 +513,7 @@ public:
|
||||
void *HtoD(void *dst, const void *src, size_t bytes) override
|
||||
{ return HipMemcpyHtoD(dst, src, bytes); }
|
||||
void *DtoD(void* dst, const void* src, size_t bytes) override
|
||||
// Unlike cudaMemcpy(DtoD), hipMemcpy(DtoD) causes a host-side synchronization so
|
||||
// instead we use hipMemcpyAsync to get similar behavior.
|
||||
// for more info see: https://github.com/mfem/mfem/pull/2780
|
||||
{ return HipMemcpyDtoDAsync(dst, src, bytes); }
|
||||
{ return HipMemcpyDtoD(dst, src, bytes); }
|
||||
void *DtoH(void *dst, const void *src, size_t bytes) override
|
||||
{ return HipMemcpyDtoH(dst, src, bytes); }
|
||||
};
|
||||
@@ -658,10 +655,7 @@ public:
|
||||
return CuMemcpyDtoD(dst, src, bytes);
|
||||
#endif
|
||||
#ifdef MFEM_USE_HIP
|
||||
// Unlike cudaMemcpy(DtoD), hipMemcpy(DtoD) causes a host-side synchronization so
|
||||
// instead we use hipMemcpyAsync to get similar behavior.
|
||||
// for more info see: https://github.com/mfem/mfem/pull/2780
|
||||
return HipMemcpyDtoDAsync(dst, src, bytes);
|
||||
return HipMemcpyDtoD(dst, src, bytes);
|
||||
#endif
|
||||
// rm.copy(dst, const_cast<void*>(src), bytes); return dst;
|
||||
}
|
||||
|
||||
@@ -897,6 +897,7 @@ inline HYPRE_MemoryLocation GetHypreMemoryLocation()
|
||||
#elif MFEM_HYPRE_VERSION < 23100
|
||||
return HYPRE_MEMORY_DEVICE;
|
||||
#else // HYPRE_USING_GPU is defined and MFEM_HYPRE_VERSION >= 23100
|
||||
if (!HYPRE_Initialized()) { return HYPRE_MEMORY_HOST; }
|
||||
HYPRE_MemoryLocation loc;
|
||||
HYPRE_GetMemoryLocation(&loc);
|
||||
return loc;
|
||||
@@ -1059,7 +1060,8 @@ inline void Memory<T>::MakeAlias(const Memory &base, int offset, int size)
|
||||
// register the 'base' if the MemoryManager::Exists():
|
||||
MemoryManager::Exists()
|
||||
#else // HYPRE_USING_GPU is defined and MFEM_HYPRE_VERSION >= 23100
|
||||
MemoryManager::Exists() && HypreUsingGPU()
|
||||
IsDeviceMemory(MemoryManager::GetDeviceMemoryType()) ||
|
||||
(MemoryManager::Exists() && HypreUsingGPU())
|
||||
#endif
|
||||
)
|
||||
{
|
||||
|
||||
@@ -537,7 +537,7 @@ void reduce(int N, T &res, B &&body, const R &reducer, bool use_dev,
|
||||
return;
|
||||
}
|
||||
|
||||
#if defined(MFEM_USE_HIP) || defined(MFEM_USE_CUDA)
|
||||
#if defined(MFEM_USE_CUDA_OR_HIP)
|
||||
if (use_dev &&
|
||||
mfem::Device::Allows(Backend::CUDA | Backend::HIP | Backend::RAJA_CUDA |
|
||||
Backend::RAJA_HIP))
|
||||
|
||||
@@ -4405,4 +4405,32 @@ void BatchLUSolve(const DenseTensor &Mlu, const Array<int> &P, Vector &X)
|
||||
BatchedLinAlg::LUSolve(Mlu, P, X);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
void BandedSolve(int KL, int KU, DenseMatrix &AB, DenseMatrix &B,
|
||||
Array<int> &ipiv)
|
||||
{
|
||||
int LDAB = (2*KL) + KU + 1;
|
||||
int N = AB.NumCols();
|
||||
int NRHS = B.NumCols();
|
||||
int info;
|
||||
ipiv.SetSize(N);
|
||||
MFEM_LAPACK_PREFIX(gbsv_)(&N, &KL, &KU, &NRHS, AB.GetData(), &LDAB,
|
||||
ipiv.GetData(), B.GetData(), &N, &info);
|
||||
MFEM_ASSERT(info == 0, "BandedSolve failed in LAPACK");
|
||||
}
|
||||
|
||||
void BandedFactorizedSolve(int KL, int KU, DenseMatrix &AB, DenseMatrix &B,
|
||||
bool transpose, Array<int> &ipiv)
|
||||
{
|
||||
int LDAB = (2*KL) + KU + 1;
|
||||
int N = AB.NumCols();
|
||||
int NRHS = B.NumCols();
|
||||
char trans = transpose ? 'T' : 'N';
|
||||
int info;
|
||||
MFEM_LAPACK_PREFIX(gbtrs_)(&trans, &N, &KL, &KU, &NRHS, AB.GetData(), &LDAB,
|
||||
ipiv.GetData(), B.GetData(), &N, &info);
|
||||
MFEM_ASSERT(info == 0, "BandedFactorizedSolve failed in LAPACK");
|
||||
}
|
||||
#endif
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -1329,6 +1329,13 @@ void BatchLUFactor(DenseTensor &Mlu, Array<int> &P, const real_t TOL = 0.0);
|
||||
dimension m x n. */
|
||||
void BatchLUSolve(const DenseTensor &Mlu, const Array<int> &P, Vector &X);
|
||||
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
void BandedSolve(int KL, int KU, DenseMatrix &AB, DenseMatrix &B,
|
||||
Array<int> &ipiv);
|
||||
void BandedFactorizedSolve(int KL, int KU, DenseMatrix &AB, DenseMatrix &B,
|
||||
bool transpose, Array<int> &ipiv);
|
||||
#endif
|
||||
|
||||
// Inline methods
|
||||
|
||||
inline real_t &DenseMatrix::operator()(int i, int j)
|
||||
|
||||
@@ -1868,6 +1868,8 @@ HYPRE_Int HypreParMatrix::Mult(HypreParVector &x, HypreParVector &y,
|
||||
|
||||
void HypreParMatrix::Mult(real_t a, const Vector &x, real_t b, Vector &y) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
MFEM_ASSERT(x.Size() == Width(), "invalid x.Size() = " << x.Size()
|
||||
<< ", expected size = " << Width());
|
||||
MFEM_ASSERT(y.Size() == Height(), "invalid y.Size() = " << y.Size()
|
||||
@@ -1926,6 +1928,8 @@ void HypreParMatrix::Mult(real_t a, const Vector &x, real_t b, Vector &y) const
|
||||
void HypreParMatrix::MultTranspose(real_t a, const Vector &x,
|
||||
real_t b, Vector &y) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
MFEM_ASSERT(x.Size() == Height(), "invalid x.Size() = " << x.Size()
|
||||
<< ", expected size = " << Height());
|
||||
MFEM_ASSERT(y.Size() == Width(), "invalid y.Size() = " << y.Size()
|
||||
@@ -4091,6 +4095,8 @@ void HypreSolver::Setup(const HypreParVector &b, HypreParVector &x) const
|
||||
{
|
||||
if (setup_called) { return; }
|
||||
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
MFEM_VERIFY(A != NULL, "HypreParMatrix A is missing");
|
||||
|
||||
HYPRE_Int err_flag = SetupFcn()(*this, *A, b, x);
|
||||
@@ -4116,6 +4122,8 @@ void HypreSolver::Setup(const Vector &b, Vector &x) const
|
||||
|
||||
void HypreSolver::Mult(const HypreParVector &b, HypreParVector &x) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
HYPRE_Int err_flag;
|
||||
if (A == NULL)
|
||||
{
|
||||
|
||||
@@ -42,6 +42,13 @@ extern "C" void
|
||||
MFEM_LAPACK_PREFIX(getri_)(int *N, real_t *A, int *LDA, int *IPIV, real_t *WORK,
|
||||
int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(gbsv_)(int *, int *, int *, int *, real_t *, int *, int *,
|
||||
real_t *, int *, int *);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(gbtrs_)(char *, int *, int *, int *, int *, real_t *, int *,
|
||||
int *, real_t *, int *, int *);
|
||||
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(syevr_)(char *JOBZ, char *RANGE, char *UPLO, int *N,
|
||||
real_t *A, int *LDA, real_t *VL, real_t *VU, int *IL,
|
||||
int *IU, real_t *ABSTOL, int *M, real_t *W,
|
||||
|
||||
@@ -588,6 +588,8 @@ void ConstrainedOperator::EliminateRHS(const Vector &x, Vector &b) const
|
||||
void ConstrainedOperator::ConstrainedMult(const Vector &x, Vector &y,
|
||||
const bool transpose) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
const int csz = constraint_list.Size();
|
||||
if (csz == 0)
|
||||
{
|
||||
@@ -787,6 +789,8 @@ void RectangularConstrainedOperator::EliminateRHS(const Vector &x,
|
||||
|
||||
void RectangularConstrainedOperator::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
const int trial_csz = trial_constraints.Size();
|
||||
const int test_csz = test_constraints.Size();
|
||||
if (trial_csz == 0)
|
||||
@@ -822,6 +826,8 @@ void RectangularConstrainedOperator::Mult(const Vector &x, Vector &y) const
|
||||
void RectangularConstrainedOperator::MultTranspose(const Vector &x,
|
||||
Vector &y) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
const int trial_csz = trial_constraints.Size();
|
||||
const int test_csz = test_constraints.Size();
|
||||
if (test_csz == 0)
|
||||
|
||||
+5
-2
@@ -13,6 +13,7 @@
|
||||
#define MFEM_OPERATOR
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "../general/annotation.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -825,10 +826,12 @@ public:
|
||||
explicit IdentityOperator(int n) : Operator(n) { }
|
||||
|
||||
/// Operator application
|
||||
void Mult(const Vector &x, Vector &y) const override { y = x; }
|
||||
void Mult(const Vector &x, Vector &y) const override
|
||||
{ MFEM_PERF_FUNCTION; y = x; }
|
||||
|
||||
/// Application of the transpose
|
||||
void MultTranspose(const Vector &x, Vector &y) const override { y = x; }
|
||||
void MultTranspose(const Vector &x, Vector &y) const override
|
||||
{ MFEM_PERF_FUNCTION; y = x; }
|
||||
};
|
||||
|
||||
/// Returns true if P is the identity prolongation, i.e. if it is either NULL or
|
||||
|
||||
+6
-1
@@ -55,6 +55,8 @@ IterativeSolver::IterativeSolver(MPI_Comm comm_)
|
||||
|
||||
real_t IterativeSolver::Dot(const Vector &x, const Vector &y) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
#ifndef MFEM_USE_MPI
|
||||
return (x * y);
|
||||
#else
|
||||
@@ -373,7 +375,7 @@ OperatorChebyshevSmoother::OperatorChebyshevSmoother(const Operator &oper_,
|
||||
real_t power_tolerance,
|
||||
int power_seed)
|
||||
#endif
|
||||
: Solver(d.Size()),
|
||||
: Solver((MFEM_PERF_BEGIN(_MFEM_FUNC_NAME), d.Size())),
|
||||
order(order_),
|
||||
N(d.Size()),
|
||||
dinv(N),
|
||||
@@ -400,6 +402,7 @@ OperatorChebyshevSmoother::OperatorChebyshevSmoother(const Operator &oper_,
|
||||
power_seed);
|
||||
|
||||
Setup();
|
||||
MFEM_PERF_END(_MFEM_FUNC_NAME);
|
||||
}
|
||||
|
||||
OperatorChebyshevSmoother::OperatorChebyshevSmoother(const Operator* oper_,
|
||||
@@ -521,6 +524,8 @@ void OperatorChebyshevSmoother::SetOrder(int new_order)
|
||||
|
||||
void OperatorChebyshevSmoother::Mult(const Vector& x, Vector &y) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
if (iterative_mode)
|
||||
{
|
||||
MFEM_ABORT("Chebyshev smoother not implemented for iterative mode");
|
||||
|
||||
@@ -764,6 +764,8 @@ void SparseMatrix::Mult(const Vector &x, Vector &y) const
|
||||
|
||||
void SparseMatrix::AddMult(const Vector &x, Vector &y, const real_t a) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
MFEM_ASSERT(width == x.Size(), "Input vector size (" << x.Size()
|
||||
<< ") must match matrix width (" << width << ")");
|
||||
MFEM_ASSERT(height == y.Size(), "Output vector size (" << y.Size()
|
||||
@@ -964,6 +966,8 @@ void SparseMatrix::MultTranspose(const Vector &x, Vector &y) const
|
||||
void SparseMatrix::AddMultTranspose(const Vector &x, Vector &y,
|
||||
const real_t a) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
MFEM_ASSERT(height == x.Size(), "Input vector size (" << x.Size()
|
||||
<< ") must match matrix height (" << height << ")");
|
||||
MFEM_ASSERT(width == y.Size(), "Output vector size (" << y.Size()
|
||||
|
||||
+16
-2
@@ -117,7 +117,7 @@ Vector::Vector(const Vector &v)
|
||||
UseDevice(v.UseDevice());
|
||||
}
|
||||
|
||||
Vector::Vector(Vector &&v)
|
||||
Vector::Vector(Vector &&v) : Vector()
|
||||
{
|
||||
*this = std::move(v);
|
||||
}
|
||||
@@ -205,14 +205,16 @@ Vector &Vector::operator=(const Vector &v)
|
||||
data.CopyFrom(v.data, v.Size());
|
||||
UseDevice(v.UseDevice());
|
||||
#else
|
||||
SetSize(v.Size());
|
||||
const bool vuse = v.UseDevice();
|
||||
const bool use_dev = UseDevice() || vuse;
|
||||
if (use_dev) { MFEM_PERF_BEGIN(_MFEM_FUNC_NAME); }
|
||||
SetSize(v.Size());
|
||||
v.UseDevice(use_dev);
|
||||
// keep 'data' where it is, unless 'use_dev' is true
|
||||
if (use_dev) { Write(); }
|
||||
data.CopyFrom(v.data, v.Size());
|
||||
v.UseDevice(vuse);
|
||||
if (use_dev) { MFEM_PERF_END(_MFEM_FUNC_NAME); }
|
||||
#endif
|
||||
return *this;
|
||||
}
|
||||
@@ -227,9 +229,11 @@ Vector &Vector::operator=(Vector &&v)
|
||||
Vector &Vector::operator=(real_t value)
|
||||
{
|
||||
const bool use_dev = UseDevice();
|
||||
if (use_dev) { MFEM_PERF_BEGIN(_MFEM_FUNC_NAME); }
|
||||
const int N = size;
|
||||
auto y = Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i) { y[i] = value; });
|
||||
if (use_dev) { MFEM_PERF_END(_MFEM_FUNC_NAME); }
|
||||
return *this;
|
||||
}
|
||||
|
||||
@@ -290,10 +294,12 @@ Vector &Vector::operator-=(const Vector &v)
|
||||
MFEM_ASSERT(size == v.size, "incompatible Vectors!");
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
if (use_dev) { MFEM_PERF_BEGIN(_MFEM_FUNC_NAME); }
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i) { y[i] -= x[i]; });
|
||||
if (use_dev) { MFEM_PERF_END(_MFEM_FUNC_NAME); }
|
||||
return *this;
|
||||
}
|
||||
|
||||
@@ -311,10 +317,12 @@ Vector &Vector::operator+=(const Vector &v)
|
||||
MFEM_ASSERT(size == v.size, "incompatible Vectors!");
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
if (use_dev) { MFEM_PERF_BEGIN(_MFEM_FUNC_NAME); }
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i) { y[i] += x[i]; });
|
||||
if (use_dev) { MFEM_PERF_END(_MFEM_FUNC_NAME); }
|
||||
return *this;
|
||||
}
|
||||
|
||||
@@ -326,9 +334,11 @@ Vector &Vector::Add(const real_t a, const Vector &Va)
|
||||
{
|
||||
const int N = size;
|
||||
const bool use_dev = UseDevice() || Va.UseDevice();
|
||||
if (use_dev) { MFEM_PERF_BEGIN(_MFEM_FUNC_NAME); }
|
||||
const auto x = Va.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i) { y[i] += a * x[i]; });
|
||||
if (use_dev) { MFEM_PERF_END(_MFEM_FUNC_NAME); }
|
||||
}
|
||||
return *this;
|
||||
}
|
||||
@@ -445,6 +455,7 @@ void add(const Vector &v1, real_t alpha, const Vector &v2, Vector &v)
|
||||
{
|
||||
#if !defined(MFEM_USE_LEGACY_OPENMP)
|
||||
const bool use_dev = v1.UseDevice() || v2.UseDevice() || v.UseDevice();
|
||||
if (use_dev) { MFEM_PERF_BEGIN(_MFEM_FUNC_NAME); }
|
||||
const int N = v.size;
|
||||
// Note: get read access first, in case v is the same as v1/v2.
|
||||
const auto d_x = v1.Read(use_dev);
|
||||
@@ -454,6 +465,7 @@ void add(const Vector &v1, real_t alpha, const Vector &v2, Vector &v)
|
||||
{
|
||||
d_z[i] = d_x[i] + alpha * d_y[i];
|
||||
});
|
||||
if (use_dev) { MFEM_PERF_END(_MFEM_FUNC_NAME); }
|
||||
#else
|
||||
const real_t *v1p = v1.data, *v2p = v2.data;
|
||||
real_t *vp = v.data;
|
||||
@@ -569,6 +581,7 @@ void subtract(const Vector &x, const Vector &y, Vector &z)
|
||||
|
||||
#if !defined(MFEM_USE_LEGACY_OPENMP)
|
||||
const bool use_dev = x.UseDevice() || y.UseDevice() || z.UseDevice();
|
||||
if (use_dev) { MFEM_PERF_BEGIN(_MFEM_FUNC_NAME); }
|
||||
const int N = x.size;
|
||||
// Note: get read access first, in case z is the same as x/y.
|
||||
const auto xd = x.Read(use_dev);
|
||||
@@ -578,6 +591,7 @@ void subtract(const Vector &x, const Vector &y, Vector &z)
|
||||
{
|
||||
zd[i] = xd[i] - yd[i];
|
||||
});
|
||||
if (use_dev) { MFEM_PERF_END(_MFEM_FUNC_NAME); }
|
||||
#else
|
||||
const real_t *xp = x.data;
|
||||
const real_t *yp = y.data;
|
||||
|
||||
+116
-26
@@ -32,6 +32,7 @@
|
||||
#include <cstring>
|
||||
#include <ctime>
|
||||
#include <functional>
|
||||
#include <set>
|
||||
#include <numeric>
|
||||
#include <unordered_map>
|
||||
#include <unordered_set>
|
||||
@@ -921,8 +922,66 @@ const FaceGeometricFactors* Mesh::GetFaceGeometricFactors(
|
||||
return gf;
|
||||
}
|
||||
|
||||
const Array<int>& Mesh::GetBdrFaceAttributes() const
|
||||
{
|
||||
if (bdr_face_attrs_cache.Size() == 0)
|
||||
{
|
||||
std::unordered_map<int, int> f_to_be;
|
||||
for (int i = 0; i < GetNBE(); ++i)
|
||||
{
|
||||
const int f = GetBdrElementFaceIndex(i);
|
||||
f_to_be[f] = i;
|
||||
}
|
||||
const int nf_bdr = GetNFbyType(FaceType::Boundary);
|
||||
// MFEM_VERIFY(size_t(nf_bdr) == f_to_be.size(), "Incompatible sizes");
|
||||
bdr_face_attrs_cache.SetSize(nf_bdr);
|
||||
int f_ind = 0;
|
||||
const int nf = GetNumFaces();
|
||||
for (int f = 0; f < nf; ++f)
|
||||
{
|
||||
if (!GetFaceInformation(f).IsOfFaceType(FaceType::Boundary))
|
||||
{
|
||||
continue;
|
||||
}
|
||||
int attribute = -1; // default value
|
||||
auto iter = f_to_be.find(f);
|
||||
if (iter != f_to_be.end())
|
||||
{
|
||||
const int be = iter->second;
|
||||
attribute = GetBdrAttribute(be);
|
||||
}
|
||||
else
|
||||
{
|
||||
// If a boundary face does not correspond to the a boundary element,
|
||||
// we assign it the default attribute of -1.
|
||||
}
|
||||
bdr_face_attrs_cache[f_ind] = attribute;
|
||||
++f_ind;
|
||||
}
|
||||
}
|
||||
return bdr_face_attrs_cache;
|
||||
}
|
||||
|
||||
const Array<int>& Mesh::GetElementAttributes() const
|
||||
{
|
||||
if (elem_attrs_cache.Size() == 0)
|
||||
{
|
||||
// re-compute cache
|
||||
elem_attrs_cache.SetSize(GetNE());
|
||||
elem_attrs_cache.HostWrite();
|
||||
for (int i = 0; i < GetNE(); ++i)
|
||||
{
|
||||
elem_attrs_cache[i] = GetAttribute(i);
|
||||
MFEM_ASSERT(elem_attrs_cache[i] > 0,
|
||||
"Negative attribute on element " << i);
|
||||
}
|
||||
}
|
||||
return elem_attrs_cache;
|
||||
}
|
||||
|
||||
void Mesh::DeleteGeometricFactors()
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
for (int i = 0; i < geom_factors.Size(); i++)
|
||||
{
|
||||
delete geom_factors[i];
|
||||
@@ -1804,6 +1863,8 @@ void Mesh::Destroy()
|
||||
TetMemory.Clear();
|
||||
#endif
|
||||
|
||||
elem_attrs_cache.DeleteAll();
|
||||
bdr_face_attrs_cache.DeleteAll();
|
||||
attributes.DeleteAll();
|
||||
bdr_attributes.DeleteAll();
|
||||
}
|
||||
@@ -1817,36 +1878,48 @@ void Mesh::ResetLazyData()
|
||||
DeleteGeometricFactors();
|
||||
nbInteriorFaces = -1;
|
||||
nbBoundaryFaces = -1;
|
||||
// set size to 0 so re-computations can potentially avoid a new allocation
|
||||
bdr_face_attrs_cache.SetSize(0);
|
||||
elem_attrs_cache.SetSize(0);
|
||||
}
|
||||
|
||||
void Mesh::SetAttributes()
|
||||
void Mesh::SetAttributes(bool elem_attrs_changed, bool bdr_face_attrs_changed)
|
||||
{
|
||||
Array<int> attribs;
|
||||
if (bdr_face_attrs_changed)
|
||||
{
|
||||
bdr_face_attrs_cache.SetSize(0); // Invalidate the cache
|
||||
|
||||
attribs.SetSize(GetNBE());
|
||||
for (int i = 0; i < attribs.Size(); i++)
|
||||
{
|
||||
attribs[i] = GetBdrAttribute(i);
|
||||
}
|
||||
attribs.Sort();
|
||||
attribs.Unique();
|
||||
attribs.Copy(bdr_attributes);
|
||||
if (bdr_attributes.Size() > 0 && bdr_attributes[0] <= 0)
|
||||
{
|
||||
MFEM_WARNING("Non-positive attributes on the boundary!");
|
||||
// Get sorted list of unique boundary element attributes
|
||||
std::set<int> attribs;
|
||||
for (int i = 0; i < GetNBE(); i++)
|
||||
{
|
||||
attribs.emplace(GetBdrAttribute(i));
|
||||
}
|
||||
|
||||
bdr_attributes.SetSize(attribs.size());
|
||||
bdr_attributes.HostWrite();
|
||||
std::copy(attribs.begin(), attribs.end(), bdr_attributes.begin());
|
||||
if (bdr_attributes.Size() > 0 && bdr_attributes[0] <= 0)
|
||||
{
|
||||
MFEM_WARNING("Non-positive attributes on the boundary!");
|
||||
}
|
||||
}
|
||||
|
||||
attribs.SetSize(GetNE());
|
||||
for (int i = 0; i < attribs.Size(); i++)
|
||||
if (elem_attrs_changed)
|
||||
{
|
||||
attribs[i] = GetAttribute(i);
|
||||
}
|
||||
attribs.Sort();
|
||||
attribs.Unique();
|
||||
attribs.Copy(attributes);
|
||||
if (attributes.Size() > 0 && attributes[0] <= 0)
|
||||
{
|
||||
MFEM_WARNING("Non-positive attributes in the domain!");
|
||||
// Re-compute the attributes cache
|
||||
elem_attrs_cache.SetSize(0);
|
||||
GetElementAttributes();
|
||||
// Get sorted list of unique element attributes
|
||||
std::set<int> attribs(elem_attrs_cache.begin(), elem_attrs_cache.end());
|
||||
attributes.SetSize(attribs.size());
|
||||
attributes.HostWrite();
|
||||
std::copy(attribs.begin(), attribs.end(), attributes.begin());
|
||||
|
||||
if (attributes.Size() > 0 && attributes[0] <= 0)
|
||||
{
|
||||
MFEM_WARNING("Non-positive attributes in the domain!");
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -4454,6 +4527,10 @@ Mesh::Mesh(const Mesh &mesh, bool copy_nodes)
|
||||
Nodes = mesh.Nodes;
|
||||
own_nodes = 0;
|
||||
}
|
||||
|
||||
// copy attribute caches
|
||||
elem_attrs_cache = mesh.elem_attrs_cache;
|
||||
bdr_face_attrs_cache = mesh.bdr_face_attrs_cache;
|
||||
}
|
||||
|
||||
Mesh::Mesh(Mesh &&mesh) : Mesh()
|
||||
@@ -6503,6 +6580,7 @@ void XYZ_VectorFunction(const Vector &p, Vector &v)
|
||||
|
||||
void Mesh::GetNodes(GridFunction &nodes) const
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
if (Nodes == NULL || Nodes->FESpace() != nodes.FESpace())
|
||||
{
|
||||
const int newSpaceDim = nodes.FESpace()->GetVDim();
|
||||
@@ -6523,6 +6601,7 @@ void Mesh::SetNodalFESpace(FiniteElementSpace *nfes)
|
||||
|
||||
void Mesh::EnsureNodes()
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
if (Nodes)
|
||||
{
|
||||
const FiniteElementCollection *fec = GetNodalFESpace()->FEColl();
|
||||
@@ -6575,6 +6654,7 @@ const FiniteElementSpace *Mesh::GetNodalFESpace() const
|
||||
|
||||
void Mesh::SetCurvature(int order, bool discont, int space_dim, int ordering)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
if (order <= 0)
|
||||
{
|
||||
delete Nodes;
|
||||
@@ -7721,6 +7801,12 @@ void Mesh::GetBdrElementAdjacentElement2(
|
||||
void Mesh::SetAttribute(int i, int attr)
|
||||
{
|
||||
elements[i]->SetAttribute(attr);
|
||||
if (elem_attrs_cache.Size() == GetNE())
|
||||
{
|
||||
// update the existing cache instead of deleting it
|
||||
elem_attrs_cache.HostReadWrite();
|
||||
elem_attrs_cache[i] = attr;
|
||||
}
|
||||
if (ncmesh) ncmesh->SetAttribute(i, attr);
|
||||
}
|
||||
|
||||
@@ -10850,6 +10936,10 @@ void Mesh::Swap(Mesh& other, bool non_geometry)
|
||||
mfem::Swap(nodes_sequence, other.nodes_sequence);
|
||||
mfem::Swap(last_operation, other.last_operation);
|
||||
}
|
||||
|
||||
// copy attribute caches
|
||||
mfem::Swap(elem_attrs_cache, other.elem_attrs_cache);
|
||||
mfem::Swap(bdr_face_attrs_cache, other.bdr_face_attrs_cache);
|
||||
}
|
||||
|
||||
void Mesh::GetElementData(const Array<Element*> &elem_array, int geom,
|
||||
@@ -13257,7 +13347,7 @@ void Mesh::ScaleElements(real_t sf)
|
||||
delete [] vn;
|
||||
}
|
||||
|
||||
void Mesh::Transform(void (*f)(const Vector&, Vector&))
|
||||
void Mesh::Transform(std::function<void(const Vector &, Vector&)> f)
|
||||
{
|
||||
// TODO: support for different new spaceDim.
|
||||
if (Nodes == NULL)
|
||||
@@ -13270,7 +13360,7 @@ void Mesh::Transform(void (*f)(const Vector&, Vector&))
|
||||
vold(j) = vertices[i](j);
|
||||
}
|
||||
vnew.SetData(vertices[i]());
|
||||
(*f)(vold, vnew);
|
||||
f(vold, vnew);
|
||||
}
|
||||
}
|
||||
else
|
||||
@@ -14649,7 +14739,7 @@ GeometricFactors::GeometricFactors(const GridFunction &nodes,
|
||||
void GeometricFactors::Compute(const GridFunction &nodes,
|
||||
MemoryType d_mt)
|
||||
{
|
||||
|
||||
MFEM_PERF_FUNCTION;
|
||||
const FiniteElementSpace *fespace = nodes.FESpace();
|
||||
const FiniteElement *fe = fespace->GetTypicalFE();
|
||||
const int dim = fe->GetDim();
|
||||
|
||||
+49
-11
@@ -107,6 +107,11 @@ protected:
|
||||
Array<Element *> boundary;
|
||||
Array<Element *> faces;
|
||||
|
||||
/// internal cache for element attributes
|
||||
mutable Array<int> elem_attrs_cache;
|
||||
/// internal cache for boundary element attributes
|
||||
mutable Array<int> bdr_face_attrs_cache;
|
||||
|
||||
/** @brief This structure stores the low level information necessary to
|
||||
interpret the configuration of elements on a specific face. This
|
||||
information can be accessed using methods like GetFaceElements(),
|
||||
@@ -588,9 +593,10 @@ protected:
|
||||
void Loader(std::istream &input, int generate_edges = 0,
|
||||
std::string parse_tag = "");
|
||||
|
||||
/** If NURBS mesh, write NURBS format. If NCMesh, write mfem v1.1 format.
|
||||
If section_delimiter is empty, write mfem v1.0 format. Otherwise, write
|
||||
mfem v1.2 format with the given section_delimiter at the end.
|
||||
/** @brief If NURBS mesh, write NURBS format. If NCMesh, write mfem v1.1
|
||||
format. If section_delimiter is empty, write mfem v1.0 format. Otherwise,
|
||||
write mfem v1.2 format with the given section_delimiter at the end.
|
||||
|
||||
If @a comments is non-empty, it will be printed after the first line of
|
||||
the file, and each line should begin with '#'. */
|
||||
void Printer(std::ostream &os = mfem::out,
|
||||
@@ -1121,13 +1127,14 @@ public:
|
||||
Mesh vertices or nodes are set. */
|
||||
virtual void Finalize(bool refine = false, bool fix_orientation = false);
|
||||
|
||||
/// @brief Determine the sets of unique attribute values in domain and
|
||||
/// boundary elements.
|
||||
/// @brief Determine the sets of unique attribute values in domain if @a
|
||||
/// elem_attrs_changed and boundary elements if @a bdr_face_attrs_changed.
|
||||
///
|
||||
/// Separately scan the domain and boundary elements to generate unique,
|
||||
/// sorted sets of the element attribute values present in the mesh and
|
||||
/// store these in the Mesh::attributes and Mesh::bdr_attributes arrays.
|
||||
virtual void SetAttributes();
|
||||
virtual void SetAttributes(bool elem_attrs_changed = true,
|
||||
bool bdr_face_attrs_changed = true);
|
||||
|
||||
/// Check (and optionally attempt to fix) the orientation of the elements
|
||||
/** @param[in] fix_it If `true`, attempt to fix the orientations of some
|
||||
@@ -2253,7 +2260,7 @@ public:
|
||||
void ScaleSubdomains (real_t sf);
|
||||
void ScaleElements (real_t sf);
|
||||
|
||||
void Transform(void (*f)(const Vector&, Vector&));
|
||||
void Transform(std::function<void(const Vector &, Vector&)> f);
|
||||
void Transform(VectorCoefficient &deformation);
|
||||
|
||||
/** @brief This function should be called after the mesh node coordinates
|
||||
@@ -2266,6 +2273,35 @@ public:
|
||||
method does not modify the nodes. */
|
||||
void NodesUpdated() { DeleteGeometricFactors(); }
|
||||
|
||||
/// @brief Returns the attributes for all elements in this mesh. The i'th
|
||||
/// entry of the array is the attribute of the i'th element of the mesh.
|
||||
///
|
||||
/// The returned array points to an internal object that may be invalidated
|
||||
/// by mesh operations such as refinement or any element attributes are
|
||||
/// modified. Since not all such modifications can be tracked by the Mesh
|
||||
/// class (e.g. if a user calls GetElement() then changes the element
|
||||
/// attribute directly), one needs to account for such changes by calling the
|
||||
/// method SetAttributes().
|
||||
const Array<int>& GetElementAttributes() const;
|
||||
|
||||
/// @brief Returns the attributes for all boundary elements in this mesh.
|
||||
///
|
||||
/// The face restriction will give "face E-vectors" on the boundary that
|
||||
/// are numbered in the order of the faces of mesh. This numbering will be
|
||||
/// different than the numbering of the boundary elements. We compute
|
||||
/// mappings so that the array `bdr_attributes[i]` gives the boundary
|
||||
/// attribute of the `i`th boundary face in the mesh face order.
|
||||
/// Attributes <= 0 indicate there is no boundary element and should be
|
||||
/// skipped.
|
||||
///
|
||||
/// The returned array points to an internal object that may be invalidated
|
||||
/// by mesh operations such as refinement or any element attributes are
|
||||
/// modified. Since not all such modifications can be tracked by the Mesh
|
||||
/// class (e.g. if a user calls GetElement() then changes the element
|
||||
/// attribute directly), one needs to account for such changes by calling the
|
||||
/// method SetAttributes().
|
||||
const Array<int>& GetBdrFaceAttributes() const;
|
||||
|
||||
/// @}
|
||||
|
||||
/// @anchor mfem_Mesh_gf_nodes
|
||||
@@ -2482,10 +2518,12 @@ public:
|
||||
/// Print the mesh to the given stream using Netgen/Truegrid format.
|
||||
virtual void PrintXG(std::ostream &os = mfem::out) const;
|
||||
|
||||
/// Print the mesh to the given stream using the default MFEM mesh format.
|
||||
/// \see mfem::ofgzstream() for on-the-fly compression of ascii outputs. If
|
||||
/// @a comments is non-empty, it will be printed after the first line of the
|
||||
/// file, and each line should begin with '#'.
|
||||
/** @brief Print the mesh to the given stream using the default MFEM mesh
|
||||
format.
|
||||
|
||||
\see mfem::ofgzstream() for on-the-fly compression of ascii outputs. If
|
||||
@a comments is non-empty, it will be printed after the first line of the
|
||||
file, and each line should begin with '#'. */
|
||||
virtual void Print(std::ostream &os = mfem::out,
|
||||
const std::string &comments = "") const
|
||||
{ Printer(os, "", comments); }
|
||||
|
||||
+85
-21
@@ -53,7 +53,7 @@ KnotVector::KnotVector(int order, int NCP)
|
||||
}
|
||||
|
||||
KnotVector::KnotVector(int order, const Vector& intervals,
|
||||
const Array<int>& continuity )
|
||||
const Array<int>& continuity)
|
||||
{
|
||||
// NOTE: This may need to be generalized to support periodicity
|
||||
// in the future.
|
||||
@@ -151,7 +151,7 @@ void KnotVector::UniformRefinement(Vector &newknots, int rf) const
|
||||
{
|
||||
for (int m = 1; m < rf; ++m)
|
||||
{
|
||||
newknots(j) = m * h * (knot(i) + knot(i+1));
|
||||
newknots(j) = ((1.0 - (m * h)) * knot(i)) + (m * h * knot(i+1));
|
||||
j++;
|
||||
}
|
||||
}
|
||||
@@ -340,7 +340,7 @@ void KnotVector::PrintFunctions(std::ostream &os, int samples) const
|
||||
}
|
||||
}
|
||||
|
||||
// Routine from "The NURBS book" - 2nd ed - Piegl and Tiller
|
||||
// Routine from "The NURBS Book" - 2nd ed - Piegl and Tiller
|
||||
// Algorithm A2.2 p. 70
|
||||
void KnotVector::CalcShape(Vector &shape, int i, real_t xi) const
|
||||
{
|
||||
@@ -367,7 +367,7 @@ void KnotVector::CalcShape(Vector &shape, int i, real_t xi) const
|
||||
}
|
||||
}
|
||||
|
||||
// Routine from "The NURBS book" - 2nd ed - Piegl and Tiller
|
||||
// Routine from "The NURBS Book" - 2nd ed - Piegl and Tiller
|
||||
// Algorithm A2.3 p. 72
|
||||
void KnotVector::CalcDShape(Vector &grad, int i, real_t xi) const
|
||||
{
|
||||
@@ -425,7 +425,7 @@ void KnotVector::CalcDShape(Vector &grad, int i, real_t xi) const
|
||||
}
|
||||
}
|
||||
|
||||
// Routine from "The NURBS book" - 2nd ed - Piegl and Tiller
|
||||
// Routine from "The NURBS Book" - 2nd ed - Piegl and Tiller
|
||||
// Algorithm A2.3 p. 72
|
||||
void KnotVector::CalcDnShape(Vector &gradn, int n, int i, real_t xi) const
|
||||
{
|
||||
@@ -545,11 +545,11 @@ void KnotVector::FindMaxima(Array<int> &ks, Vector &xi, Vector &u) const
|
||||
int i = j - d;
|
||||
if (isElement(i))
|
||||
{
|
||||
arg1 = 1e-16;
|
||||
arg1 = std::numeric_limits<real_t>::epsilon() / 2_r;
|
||||
CalcShape(shape, i, arg1);
|
||||
max1 = shape[d];
|
||||
|
||||
arg2 = 1-(1e-16);
|
||||
arg2 = 1_r - arg1;
|
||||
CalcShape(shape, i, arg2);
|
||||
max2 = shape[d];
|
||||
|
||||
@@ -587,9 +587,9 @@ void KnotVector::FindMaxima(Array<int> &ks, Vector &xi, Vector &u) const
|
||||
}
|
||||
}
|
||||
|
||||
// Routine from "The NURBS book" - 2nd ed - Piegl and Tiller
|
||||
// Routine from "The NURBS Book" - 2nd ed - Piegl and Tiller
|
||||
// Algorithm A9.1 p. 369
|
||||
void KnotVector::FindInterpolant(Array<Vector*> &x)
|
||||
void KnotVector::FindInterpolant(Array<Vector*> &x, bool reuse_inverse)
|
||||
{
|
||||
int order = GetOrder();
|
||||
int ncp = GetNCP();
|
||||
@@ -597,29 +597,93 @@ void KnotVector::FindInterpolant(Array<Vector*> &x)
|
||||
// Find interpolation points
|
||||
Vector xi_args, u_args;
|
||||
Array<int> i_args;
|
||||
FindMaxima(i_args,xi_args, u_args);
|
||||
FindMaxima(i_args, xi_args, u_args);
|
||||
|
||||
// Assemble collocation matrix
|
||||
Vector shape(order+1);
|
||||
DenseMatrix A(ncp,ncp);
|
||||
A = 0.0;
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
// If using LAPACK, we use banded matrix storage (order + 1 nonzeros per row).
|
||||
// Find banded structure of matrix.
|
||||
int KL = 0; // Number of subdiagonals
|
||||
int KU = 0; // Number of superdiagonals
|
||||
for (int i = 0; i < ncp; i++)
|
||||
{
|
||||
CalcShape(shape, i_args[i], xi_args[i]);
|
||||
for (int p = 0; p < order+1; p++)
|
||||
{
|
||||
A(i,i_args[i] + p) = shape[p];
|
||||
const int col = i_args[i] + p;
|
||||
if (col < i)
|
||||
{
|
||||
KL = std::max(KL, i - col);
|
||||
}
|
||||
else if (i < col)
|
||||
{
|
||||
KU = std::max(KU, col - i);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Solve problems
|
||||
A.Invert();
|
||||
const int LDAB = (2*KL) + KU + 1;
|
||||
const int N = ncp;
|
||||
|
||||
fact_AB.SetSize(LDAB, N);
|
||||
#else
|
||||
// Without LAPACK, we store and invert a DenseMatrix (inefficient).
|
||||
if (!reuse_inverse)
|
||||
{
|
||||
A_coll_inv.SetSize(ncp, ncp);
|
||||
A_coll_inv = 0.0;
|
||||
}
|
||||
#endif
|
||||
|
||||
Vector shape(order+1);
|
||||
|
||||
if (!reuse_inverse) // Set collocation matrix entries
|
||||
{
|
||||
for (int i = 0; i < ncp; i++)
|
||||
{
|
||||
CalcShape(shape, i_args[i], xi_args[i]);
|
||||
for (int p = 0; p < order+1; p++)
|
||||
{
|
||||
const int j = i_args[i] + p;
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
fact_AB(KL+KU+i-j,j) = shape[p];
|
||||
#else
|
||||
A_coll_inv(i,j) = shape[p];
|
||||
#endif
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Solve the system
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
const int NRHS = x.Size();
|
||||
DenseMatrix B(N, NRHS);
|
||||
for (int j=0; j<NRHS; ++j)
|
||||
{
|
||||
for (int i=0; i<N; ++i) { B(i, j) = (*x[j])[i]; }
|
||||
}
|
||||
|
||||
if (reuse_inverse)
|
||||
{
|
||||
BandedFactorizedSolve(KL, KU, fact_AB, B, false, fact_ipiv);
|
||||
}
|
||||
else
|
||||
{
|
||||
BandedSolve(KL, KU, fact_AB, B, fact_ipiv);
|
||||
}
|
||||
|
||||
for (int j=0; j<NRHS; ++j)
|
||||
{
|
||||
for (int i=0; i<N; ++i) { (*x[j])[i] = B(i, j); }
|
||||
}
|
||||
#else
|
||||
if (!reuse_inverse) { A_coll_inv.Invert(); }
|
||||
Vector tmp;
|
||||
for (int i= 0; i < x.Size(); i++)
|
||||
for (int i = 0; i < x.Size(); i++)
|
||||
{
|
||||
tmp = *x[i];
|
||||
A.Mult(tmp,*x[i]);
|
||||
A_coll_inv.Mult(tmp, *x[i]);
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
int KnotVector::findKnotSpan(real_t u) const
|
||||
@@ -1421,7 +1485,7 @@ void NURBSPatch::DegreeElevate(int t)
|
||||
}
|
||||
}
|
||||
|
||||
// Routine from "The NURBS book" - 2nd ed - Piegl and Tiller
|
||||
// Routine from "The NURBS Book" - 2nd ed - Piegl and Tiller
|
||||
void NURBSPatch::DegreeElevate(int dir, int t)
|
||||
{
|
||||
if (dir >= kv.Size() || dir < 0)
|
||||
@@ -2385,7 +2449,7 @@ NURBSExtension::NURBSExtension(Mesh *mesh_array[], int num_pieces)
|
||||
}
|
||||
|
||||
NURBSExtension::NURBSExtension(const Mesh *patch_topology,
|
||||
const Array<const NURBSPatch*> patches_)
|
||||
const Array<const NURBSPatch*> &patches_)
|
||||
{
|
||||
// Basic topology checks
|
||||
MFEM_VERIFY(patches_.Size() > 0, "Must have at least one patch");
|
||||
|
||||
+18
-4
@@ -143,8 +143,13 @@ public:
|
||||
/** @brief Global curve interpolation through the points @a x (overwritten).
|
||||
@a x is an array with the length of the spatial dimension containing
|
||||
vectors with spatial coordinates. The control points of the interpolated
|
||||
curve are returned in @a x in the same form. */
|
||||
void FindInterpolant(Array<Vector*> &x);
|
||||
curve are returned in @a x in the same form.
|
||||
|
||||
The inverse of the collocation matrix, used in the interpolation, is
|
||||
stored for repeated calls and used if @a reuse_inverse is true. Reuse is
|
||||
valid only if this KnotVector has not changed since the initial call with
|
||||
@a reuse_inverse false. */
|
||||
void FindInterpolant(Array<Vector*> &x, bool reuse_inverse = false);
|
||||
|
||||
/** Set @a diff, comprised of knots in @a kv not contained in this KnotVector.
|
||||
@a kv must be of the same order as this KnotVector. The current
|
||||
@@ -202,6 +207,14 @@ public:
|
||||
/** Flag to indicate whether the KnotVector has been coarsened, which means
|
||||
it is ready for non-nested refinement. */
|
||||
bool coarse;
|
||||
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
// Data for reusing banded matrix factorization in FindInterpolant().
|
||||
DenseMatrix fact_AB; /// Banded matrix factorization
|
||||
Array<int> fact_ipiv; /// Row pivot indices
|
||||
#else
|
||||
DenseMatrix A_coll_inv; /// Collocation matrix inverse
|
||||
#endif
|
||||
};
|
||||
|
||||
|
||||
@@ -285,7 +298,7 @@ public:
|
||||
includes the weight. The array of control point coordinates stores each
|
||||
point's coordinates contiguously, and points are ordered in a standard
|
||||
ijk grid ordering. */
|
||||
NURBSPatch(Array<const KnotVector *> &kv_, int dim_,
|
||||
NURBSPatch(Array<const KnotVector *> &kv_, int dim_,
|
||||
const real_t* control_points);
|
||||
|
||||
/// Constructor for a patch of dimension equal to the size of @a kv.
|
||||
@@ -700,7 +713,8 @@ public:
|
||||
|
||||
NURBSExtension(Mesh *mesh_array[], int num_pieces);
|
||||
|
||||
NURBSExtension(const Mesh *patch_topology, const Array<const NURBSPatch*> p);
|
||||
NURBSExtension(const Mesh *patch_topology,
|
||||
const Array<const NURBSPatch*> &patches_);
|
||||
|
||||
/// Copy assignment not supported.
|
||||
NURBSExtension& operator=(const NURBSExtension&) = delete;
|
||||
|
||||
+15
-8
@@ -1590,21 +1590,27 @@ void ParMesh::DistributeAttributes(Array<int> &attr)
|
||||
delete [] glb_attr_marker;
|
||||
}
|
||||
|
||||
void ParMesh::SetAttributes()
|
||||
void ParMesh::SetAttributes(bool elem_attrs_changed, bool bdr_attrs_changed)
|
||||
{
|
||||
// Determine the attributes occurring in local interior and boundary elements
|
||||
Mesh::SetAttributes();
|
||||
Mesh::SetAttributes(elem_attrs_changed, bdr_attrs_changed);
|
||||
|
||||
DistributeAttributes(bdr_attributes);
|
||||
if (bdr_attributes.Size() > 0 && bdr_attributes[0] <= 0)
|
||||
if (bdr_attrs_changed)
|
||||
{
|
||||
MFEM_WARNING("Non-positive boundary element attributes found!");
|
||||
DistributeAttributes(bdr_attributes);
|
||||
if (bdr_attributes.Size() > 0 && bdr_attributes[0] <= 0)
|
||||
{
|
||||
MFEM_WARNING("Non-positive boundary element attributes found!");
|
||||
}
|
||||
}
|
||||
|
||||
DistributeAttributes(attributes);
|
||||
if (attributes.Size() > 0 && attributes[0] <= 0)
|
||||
if (elem_attrs_changed)
|
||||
{
|
||||
MFEM_WARNING("Non-positive element attributes found!");
|
||||
DistributeAttributes(attributes);
|
||||
if (attributes.Size() > 0 && attributes[0] <= 0)
|
||||
{
|
||||
MFEM_WARNING("Non-positive element attributes found!");
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -2010,6 +2016,7 @@ void ParMesh::DeleteFaceNbrData()
|
||||
|
||||
void ParMesh::SetCurvature(int order, bool discont, int space_dim, int ordering)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
DeleteFaceNbrData();
|
||||
space_dim = (space_dim == -1) ? spaceDim : space_dim;
|
||||
FiniteElementCollection* nfec;
|
||||
|
||||
+2
-1
@@ -394,7 +394,8 @@ public:
|
||||
|
||||
void Finalize(bool refine = false, bool fix_orientation = false) override;
|
||||
|
||||
void SetAttributes() override;
|
||||
void SetAttributes(bool elem_attrs_changed = true,
|
||||
bool bdr_attrs_changed = true) override;
|
||||
|
||||
/// Checks if any rank in the mesh has boundary elements
|
||||
bool HasBoundaryElements() const override;
|
||||
|
||||
@@ -257,15 +257,7 @@ template <typename SubMeshT>
|
||||
void AddBoundaryElements(SubMeshT &mesh,
|
||||
const std::unordered_map<int,int> &lface_to_boundary_attribute)
|
||||
{
|
||||
mesh.Dimension();
|
||||
const int num_codim_1 = [&mesh]()
|
||||
{
|
||||
auto Dim = mesh.Dimension();
|
||||
if (Dim == 1) { return mesh.GetNV(); }
|
||||
else if (Dim == 2) { return mesh.GetNEdges(); }
|
||||
else if (Dim == 3) { return mesh.GetNFaces(); }
|
||||
else { MFEM_ABORT("Invalid dimension."); return -1; }
|
||||
}();
|
||||
const int num_codim_1 = mesh.GetNumFaces();
|
||||
|
||||
if (mesh.Dimension() == 3)
|
||||
{
|
||||
|
||||
@@ -175,6 +175,56 @@ real_t w_xx(int n, real_t x)
|
||||
|
||||
#endif // CEED_SOLVER_BP_SOLUTION_OPTION
|
||||
|
||||
using BPSFunctionType = real_t(*)(int n, const real_t *xyz);
|
||||
|
||||
template <BPSFunctionType F>
|
||||
void ProjectBPSFunction(int n, QuadratureFunction &qf)
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
QuadratureSpaceBase &qs = *qf.GetSpace();
|
||||
Mesh &mesh = *qs.GetMesh();
|
||||
const IntegrationRule &ir = qs.GetIntRule(0);
|
||||
|
||||
auto *geom = mesh.GetGeometricFactors(ir, GeometricFactors::COORDINATES);
|
||||
|
||||
const int dim = qs.GetMesh()->Dimension();
|
||||
const int nq = ir.Size();
|
||||
const int N = qf.Size();
|
||||
|
||||
const real_t *d_x = geom->X.Read();
|
||||
real_t *d_q = qf.Write();
|
||||
|
||||
mfem::forall(N, [=] MFEM_HOST_DEVICE (int ii)
|
||||
{
|
||||
const int i = ii / nq;
|
||||
const int j = ii % nq;
|
||||
real_t xvec[3];
|
||||
for (int d = 0; d < dim; ++d)
|
||||
{
|
||||
xvec[d] = d_x[j + d*nq + i*dim*nq];
|
||||
}
|
||||
d_q[ii] = F(n, xvec);
|
||||
});
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE inline
|
||||
real_t sol_1d(const int n, const real_t *xyz)
|
||||
{
|
||||
return w(n, xyz[0]);
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE inline
|
||||
real_t sol_2d(const int n, const real_t *xyz)
|
||||
{
|
||||
return w(n, xyz[0])*w(n, xyz[1]);
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE inline
|
||||
real_t sol_3d(const int n, const real_t *xyz)
|
||||
{
|
||||
return w(n, xyz[0])*w(n, xyz[1])*w(n, xyz[2]);
|
||||
}
|
||||
|
||||
struct ExactSolution : Coefficient
|
||||
{
|
||||
int dim, n;
|
||||
@@ -198,6 +248,17 @@ struct ExactSolution : Coefficient
|
||||
return w(n, xyz[0])*w(n, xyz[1])*w(n, xyz[2]);
|
||||
}
|
||||
}
|
||||
|
||||
void Project(QuadratureFunction &qf) override
|
||||
{
|
||||
switch (dim)
|
||||
{
|
||||
case 1: ProjectBPSFunction<sol_1d>(n, qf); break;
|
||||
case 2: ProjectBPSFunction<sol_2d>(n, qf); break;
|
||||
case 3: ProjectBPSFunction<sol_3d>(n, qf); break;
|
||||
default: MFEM_ABORT("Unsupported dimension.");
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
struct ExactGrad : VectorCoefficient
|
||||
@@ -254,45 +315,14 @@ real_t rhs_3d(const int n, const real_t *xyz)
|
||||
- w(n, xyz[0])*w(n, xyz[1])*w_xx(n, xyz[2]);
|
||||
}
|
||||
|
||||
using RHSFunctionType = real_t(*)(int dim, const real_t *xyz);
|
||||
|
||||
template <RHSFunctionType F>
|
||||
void ProjectRHS_(int n, QuadratureFunction &qf)
|
||||
{
|
||||
QuadratureSpaceBase &qs = *qf.GetSpace();
|
||||
Mesh &mesh = *qs.GetMesh();
|
||||
const IntegrationRule &ir = qs.GetIntRule(0);
|
||||
|
||||
auto *geom = mesh.GetGeometricFactors(ir, GeometricFactors::COORDINATES);
|
||||
|
||||
const int dim = qs.GetMesh()->Dimension();
|
||||
const int nq = ir.Size();
|
||||
const int N = qf.Size();
|
||||
|
||||
const real_t *d_x = geom->X.Read();
|
||||
real_t *d_q = qf.Write();
|
||||
|
||||
mfem::forall(N, [=] MFEM_HOST_DEVICE (int ii)
|
||||
{
|
||||
const int i = ii / nq;
|
||||
const int j = ii % nq;
|
||||
real_t xvec[3];
|
||||
for (int d = 0; d < dim; ++d)
|
||||
{
|
||||
xvec[d] = d_x[j + d*nq + i*dim*nq];
|
||||
}
|
||||
d_q[ii] = F(n, xvec);
|
||||
});
|
||||
}
|
||||
|
||||
void ProjectRHS(int n, QuadratureFunction &qf)
|
||||
{
|
||||
const int dim = qf.GetSpace()->GetMesh()->Dimension();
|
||||
switch (dim)
|
||||
{
|
||||
case 1: ProjectRHS_<rhs_1d>(n, qf); break;
|
||||
case 2: ProjectRHS_<rhs_2d>(n, qf); break;
|
||||
case 3: ProjectRHS_<rhs_3d>(n, qf); break;
|
||||
case 1: ProjectBPSFunction<rhs_1d>(n, qf); break;
|
||||
case 2: ProjectBPSFunction<rhs_2d>(n, qf); break;
|
||||
case 3: ProjectBPSFunction<rhs_3d>(n, qf); break;
|
||||
default: MFEM_ABORT("Unsupported dimension.");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -3,14 +3,15 @@ ssep="----------------------------------------"
|
||||
# Enable GPU-aware MPI:
|
||||
# gpu_aware_mpi_env_cmd="env MPICH_GPU_SUPPORT_ENABLED=1"
|
||||
# gpu_aware_mpi="-g"
|
||||
# number of nodes, number of MPI ranks:
|
||||
nnodes=1
|
||||
# number of MPI ranks, number of ranks per node, number of nodes:
|
||||
np=1
|
||||
# dev="-d hip ${gpu_aware_mpi}"
|
||||
nrnode=4
|
||||
((nnodes = (np+nrnode-1)/nrnode))
|
||||
# dev="-d gpu ${gpu_aware_mpi}"
|
||||
eps="0.3"
|
||||
# mpirun_np="mpirun -np"
|
||||
mpirun_np="env MFEM_REPORT_KERNELS=1 mpirun -np"
|
||||
# mpirun_np="${gpu_aware_mpi_env_cmd} flux run --exclusive -N ${nnodes} -n"
|
||||
# mpirun_np="${gpu_aware_mpi_env_cmd} flux run -x -N ${nnodes} -n"
|
||||
# dry run:
|
||||
# mpirun_np="echo ${mpirun_np}"
|
||||
# p-MG/LOR + FA-hypre, or diagonal (Jacobi smoother)
|
||||
@@ -37,7 +38,7 @@ while ((np_ > 8)); do
|
||||
done
|
||||
((mf = 2**mm))
|
||||
((mff = 3*mf))
|
||||
echo " *** mf = ${mf}, mff = ${mff}"
|
||||
echo " *** np = ${np}, mf = ${mf}, mff = ${mff}"
|
||||
for mg in "${mg_set[@]}"; do
|
||||
echo "${bsep}"
|
||||
p=(${mg})
|
||||
@@ -98,26 +99,26 @@ for mg in "${mg_set[@]}"; do
|
||||
echo "np = ${np}, p = ${p}, ndofs = ${ndofs}"
|
||||
if [[ "$prec_type" == "p-mg" ]]; then
|
||||
# p-MG
|
||||
printf "$mpirun_np ${np} ./solver-bp ${dev}"
|
||||
printf "$mpirun_np ${np} ./solver-bp ${dev} -nrn ${nrnode}"
|
||||
printf " -ey ${eps} -mg \"${mg}\" -cs 1 ${p_mg_opts}"
|
||||
printf " -nx ${nx} -rp ${rp}\n"
|
||||
echo "${ssep}"
|
||||
$mpirun_np "${np}" ./solver-bp ${dev} \
|
||||
$mpirun_np "${np}" ./solver-bp ${dev} -nrn ${nrnode} \
|
||||
-ey ${eps} -mg "${mg}" -cs 1 ${p_mg_opts} -nx "${nx}" -rp "${rp}"
|
||||
elif [[ "$prec_type" == "lor" ]]; then
|
||||
# LOR
|
||||
printf "$mpirun_np ${np} ./solver-bp ${dev}"
|
||||
printf "$mpirun_np ${np} ./solver-bp ${dev} -nrn ${nrnode}"
|
||||
printf " -ey ${eps} -mg \"${p}\" -cs 2 ${lor_opts}"
|
||||
printf " -nx ${nx} -rp ${rp}\n"
|
||||
echo "${ssep}"
|
||||
$mpirun_np "${np}" ./solver-bp ${dev} \
|
||||
$mpirun_np "${np}" ./solver-bp ${dev} -nrn ${nrnode} \
|
||||
-ey ${eps} -mg "${p}" -cs 2 ${lor_opts} -nx "${nx}" -rp "${rp}"
|
||||
elif [[ "$prec_type" == "diag" ]]; then
|
||||
# Diag
|
||||
printf "$mpirun_np ${np} ./solver-bp ${dev}"
|
||||
printf "$mpirun_np ${np} ./solver-bp ${dev} -nrn ${nrnode}"
|
||||
printf " -ey ${eps} -mg \"${p}\" -cs 0 -nx ${nx} -rp ${rp}\n"
|
||||
echo "${ssep}"
|
||||
$mpirun_np "${np}" ./solver-bp ${dev} \
|
||||
$mpirun_np "${np}" ./solver-bp ${dev} -nrn ${nrnode} \
|
||||
-ey ${eps} -mg "${p}" -cs 0 -nx "${nx}" -rp "${rp}"
|
||||
fi
|
||||
done
|
||||
|
||||
@@ -71,6 +71,8 @@ struct CGMonitor : IterativeSolverMonitor
|
||||
void MonitorResidual(int it, real_t norm, const Vector &r, bool final)
|
||||
override
|
||||
{
|
||||
MFEM_PERF_FUNCTION;
|
||||
|
||||
MFEM_CONTRACT_VAR(norm);
|
||||
// Avoid recomputing the norm if it was already computed -- this method
|
||||
// is called two times for the final iteration: once with final = false
|
||||
@@ -139,11 +141,13 @@ int main(int argc, char *argv[])
|
||||
DiffusionIntegrator::AddSpecialization<3,4,4>();
|
||||
DiffusionIntegrator::AddSpecialization<3,5,5>();
|
||||
DiffusionIntegrator::AddSpecialization<3,6,6>();
|
||||
DiffusionIntegrator::AddSpecialization<3,7,7>();
|
||||
|
||||
Mpi::Init(argc, argv);
|
||||
Hypre::Init();
|
||||
|
||||
const char *device_config = "cpu";
|
||||
int nrnode = 4; // number of ranks per node, used for CSV output only
|
||||
bool gpu_aware_mpi = false;
|
||||
int nx = 6, ny = -1, nz = -1;
|
||||
int rhs_n = -1;
|
||||
@@ -159,6 +163,9 @@ int main(int argc, char *argv[])
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&nrnode, "-nrn", "--num-ranks-per-node",
|
||||
"Number of ranks per compute node. Used to compute the number"
|
||||
" of nodes written in CSV output.");
|
||||
args.AddOption(&gpu_aware_mpi, "-g", "--gpu-aware-mpi", "-no-g",
|
||||
"--no-gpu-aware-mpi", "Enable GPU-aware MPI.");
|
||||
args.AddOption(&mg_spec, "-mg", "--multigrid-spec",
|
||||
@@ -215,9 +222,15 @@ int main(int argc, char *argv[])
|
||||
report_env_vars();
|
||||
|
||||
// Generate mesh
|
||||
MFEM_PERF_BEGIN("CreateKershawMesh");
|
||||
ParMesh mesh_coarse = CreateKershawMesh(nx, ny, nz, epsy, epsz);
|
||||
MFEM_PERF_END("CreateKershawMesh");
|
||||
const int dim = mesh_coarse.Dimension();
|
||||
for (int i=0; i<ref_par; ++i) { mesh_coarse.UniformRefinement(); }
|
||||
for (int i=0; i<ref_par; ++i)
|
||||
{
|
||||
MFEM_PERF_SCOPE("Mesh UniformRefinement");
|
||||
mesh_coarse.UniformRefinement();
|
||||
}
|
||||
|
||||
int coarse_order = 0, order = 0, h_ref = ref_par;
|
||||
// Parse order specification
|
||||
@@ -292,6 +305,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
#endif
|
||||
|
||||
MFEM_PERF_BEGIN("Setup [hierarchy]");
|
||||
vector<unique_ptr<FiniteElementCollection>> fe_collections;
|
||||
fe_collections.emplace_back(new H1_FECollection(coarse_order, dim));
|
||||
ParFiniteElementSpace fes_coarse(&mesh_coarse, fe_collections.back().get());
|
||||
@@ -310,6 +324,7 @@ int main(int argc, char *argv[])
|
||||
hierarchy.AddOrderRefinedLevel(fe_collections.back().get());
|
||||
}
|
||||
}
|
||||
MFEM_PERF_END("Setup [hierarchy]");
|
||||
|
||||
const int nlevels = hierarchy.GetNumLevels();
|
||||
if (Mpi::Root())
|
||||
@@ -344,7 +359,9 @@ int main(int argc, char *argv[])
|
||||
|
||||
ParFiniteElementSpace &fes = hierarchy.GetFinestFESpace();
|
||||
ParMesh &mesh = *fes.GetParMesh();
|
||||
MFEM_PERF_BEGIN("ParMesh PrintInfo");
|
||||
mesh.PrintInfo(cout);
|
||||
MFEM_PERF_END("ParMesh PrintInfo");
|
||||
HYPRE_Int ndof = fes.GlobalTrueVSize();
|
||||
if (Mpi::Root())
|
||||
{
|
||||
@@ -363,6 +380,7 @@ int main(int argc, char *argv[])
|
||||
ConstantCoefficient coeff(1.0); // Diffusion coefficient
|
||||
// Set up RHS
|
||||
if (Mpi::Root()) { cout << "Assembling right-hand side..." << endl; }
|
||||
MFEM_PERF_BEGIN("Setup [RHS]");
|
||||
RHS rhs_coeff(dim, rhs_n);
|
||||
ParLinearForm b(&fes);
|
||||
const int rhs_ir_inc = 2*q1d_inc+1;
|
||||
@@ -370,12 +388,20 @@ int main(int argc, char *argv[])
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(rhs_coeff, 2, rhs_ir_inc));
|
||||
b.UseFastAssembly(true);
|
||||
b.Assemble();
|
||||
MFEM_PERF_END("Setup [RHS]");
|
||||
if (Mpi::Root()) { cout << "Assembling right-hand side... Done." << endl; }
|
||||
|
||||
// Free device memory: the geometric facros computed so far are:
|
||||
// * the coordinates, for the rhs coefficient evaluation, and
|
||||
// * the detJ, for the DomainLFIntegrator.
|
||||
// These are no-longer needed (?), so we can free the memory.
|
||||
mesh.DeleteGeometricFactors();
|
||||
|
||||
// make sure the GPU is done with any previous tasks:
|
||||
if (Device::Allows(Backend::DEVICE_MASK)) { MFEM_STREAM_SYNC; }
|
||||
// make sure all ranks are done with any previous tasks:
|
||||
MPI_Barrier(MPI_COMM_WORLD);
|
||||
MFEM_PERF_BEGIN("Setup [DiffusionMultigrid]");
|
||||
tic();
|
||||
// Set up operators in the multigrid hierarchy
|
||||
DiffusionMultigrid MG(hierarchy, coeff, ess_bdr, coarse_solver, q1d_inc,
|
||||
@@ -385,37 +411,43 @@ int main(int argc, char *argv[])
|
||||
if (Device::Allows(Backend::DEVICE_MASK)) { MFEM_STREAM_SYNC; }
|
||||
// make sure all ranks are done with all setup tasks:
|
||||
MPI_Barrier(MPI_COMM_WORLD);
|
||||
const real_t t_setup = tic_toc.RealTime();
|
||||
const double t_setup = tic_toc.RealTime();
|
||||
MFEM_PERF_END("Setup [DiffusionMultigrid]");
|
||||
|
||||
ParGridFunction x(&fes);
|
||||
x = 0.0;
|
||||
|
||||
OperatorPtr A;
|
||||
Vector X, B;
|
||||
MFEM_PERF_BEGIN("Setup [MG.FormFineLinearSystem]");
|
||||
MG.FormFineLinearSystem(x, b, A, X, B);
|
||||
MFEM_PERF_END("Setup [MG.FormFineLinearSystem]");
|
||||
|
||||
const real_t l2_tol = 1e-8;
|
||||
CGMonitor monitor(l2_tol);
|
||||
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(0.0); // use the 'monitor' for convergence
|
||||
cg.SetPrintLevel(1);
|
||||
cg.SetPrintLevel(3);
|
||||
cg.SetOperator(*A);
|
||||
cg.SetPreconditioner(MG);
|
||||
cg.SetMonitor(monitor);
|
||||
// Run 2 CG iterations to ensure everything is allocated and initialized for
|
||||
// the full CG solve:
|
||||
if (Mpi::Root()) { cout << "Running 2 warm-up CG iterations ...\n"; }
|
||||
MFEM_PERF_BEGIN("Warm-up");
|
||||
cg.SetMaxIter(2);
|
||||
{
|
||||
Vector X_save(X);
|
||||
cg.Mult(B, X);
|
||||
X = X_save;
|
||||
}
|
||||
MFEM_PERF_END("Warm-up");
|
||||
if (coarse_solver.inner_sli &&
|
||||
((coarse_solver.type == SolverConfig::FA_HYPRE /* && order > 1 */) ||
|
||||
coarse_solver.type == SolverConfig::LOR_HYPRE))
|
||||
{
|
||||
MFEM_PERF_SCOPE("Auto-tuning");
|
||||
// timing data: (t-solve,sli-iter,cheby-order,pcg-iter)
|
||||
std::vector<std::tuple<double,int,int,int>> timings;
|
||||
Vector X_save(X);
|
||||
@@ -427,6 +459,8 @@ int main(int argc, char *argv[])
|
||||
for (int cheby_order = 1; cheby_order <= smoothers_cheby_order;
|
||||
cheby_order++)
|
||||
{
|
||||
MFEM_PERF_SCOPE(("Timing [" + to_string(sli_it) + "," +
|
||||
to_string(cheby_order) + "]").c_str());
|
||||
MG.SetSmoothersChebyshevOrder(cheby_order);
|
||||
|
||||
if (Mpi::Root())
|
||||
@@ -507,6 +541,7 @@ int main(int argc, char *argv[])
|
||||
if (Device::Allows(Backend::DEVICE_MASK)) { MFEM_STREAM_SYNC; }
|
||||
// make sure all ranks are done with any previous tasks:
|
||||
MPI_Barrier(MPI_COMM_WORLD);
|
||||
MFEM_PERF_BEGIN("Final CG Solve");
|
||||
tic();
|
||||
cg.Mult(B, X);
|
||||
// make sure the GPU is done with all solve tasks:
|
||||
@@ -514,6 +549,7 @@ int main(int argc, char *argv[])
|
||||
// make sure all ranks are done with all solve tasks:
|
||||
MPI_Barrier(MPI_COMM_WORLD);
|
||||
const double t_solve = tic_toc.RealTime();
|
||||
MFEM_PERF_END("Final CG Solve");
|
||||
|
||||
const int niter = cg.GetConverged() ? cg.GetNumIterations() : -1;
|
||||
|
||||
@@ -526,10 +562,12 @@ int main(int argc, char *argv[])
|
||||
|
||||
MG.RecoverFineFEMSolution(X, b, x);
|
||||
|
||||
MFEM_PERF_BEGIN("Compute L2 Error");
|
||||
ExactSolution exact_coeff(dim, rhs_n);
|
||||
// ExactGrad exact_grad_coeff(dim, rhs_n);
|
||||
real_t L2_err = x.ComputeL2Error(exact_coeff);
|
||||
// real_t grad_err = x.ComputeGradError(&exact_grad_coeff);
|
||||
MFEM_PERF_END("Compute L2 Error");
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "\nL2 Error: " << setprecision(10) << scientific
|
||||
@@ -669,7 +707,7 @@ int main(int argc, char *argv[])
|
||||
string host_id = regex_replace(hostname ? hostname : "(unknown)",
|
||||
regex("[0-9]*$"), "");
|
||||
cout << ',' << host_id; // 3
|
||||
cout << ',' << (fes.GetNRanks() + 7)/8; // 4 (assuming 8 ranks/node !!)
|
||||
cout << ',' << (fes.GetNRanks() + (nrnode-1))/nrnode; // 4
|
||||
cout << ',' << fes.GetNRanks(); // 5
|
||||
cout << ',' << nx << ',' << ny << ',' << nz; // 6,7,8
|
||||
cout << ',' << order; // 9
|
||||
@@ -691,7 +729,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
void report_hypre_gpu_status(bool gpu_aware_mpi_requested)
|
||||
{
|
||||
#ifdef HYPRE_WITH_GPU_AWARE_MPI
|
||||
#if defined(HYPRE_WITH_GPU_AWARE_MPI) || defined(HYPRE_USING_GPU_AWARE_MPI)
|
||||
bool hypre_gpu_aware_mpi = true;
|
||||
#else
|
||||
bool hypre_gpu_aware_mpi = false;
|
||||
@@ -705,11 +743,7 @@ void report_hypre_gpu_status(bool gpu_aware_mpi_requested)
|
||||
"GPU-aware MPI requested but HYPRE's GPU-aware MPI support"
|
||||
" is not enabled");
|
||||
cout << "\nHYPRE GPU support: "
|
||||
#ifdef HYPRE_USING_GPU
|
||||
<< "enabled";
|
||||
#else
|
||||
<< "disabled";
|
||||
#endif
|
||||
<< (HypreUsingGPU() ? "enabled" : "disabled");
|
||||
cout << "\nHYPRE GPU-aware MPI support: "
|
||||
<< (hypre_gpu_aware_mpi ? "enabled" : "disabled") << endl;
|
||||
}
|
||||
|
||||
@@ -80,6 +80,10 @@ add_mfem_miniapp(nurbs_solenoidal
|
||||
LIBRARIES mfem)
|
||||
add_dependencies(nurbs_solenoidal copy_miniapps_nurbs_data)
|
||||
|
||||
add_mfem_miniapp(nurbs_surface
|
||||
MAIN nurbs_surface.cpp
|
||||
LIBRARIES mfem)
|
||||
|
||||
if (MFEM_ENABLE_TESTING)
|
||||
add_test(NAME nurbs_ex1_1d_r1_o2_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_ex1> -no-vis
|
||||
@@ -247,6 +251,14 @@ if (MFEM_ENABLE_TESTING)
|
||||
COMMAND $<TARGET_FILE:nurbs_solenoidal> -no-vis
|
||||
-m ${PROJECT_SOURCE_DIR}/data/cube-nurbs.mesh -r 1 -o 2)
|
||||
|
||||
add_test(NAME nurbs_surface_10_10_10_10_ex1_o3_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_surface> -no-vis
|
||||
-o 3 -nx 10 -ny 10 -fnx 10 -fny 10 -ex 1 -orig)
|
||||
|
||||
add_test(NAME nurbs_surface_10_10_40_40_ex1_o3_ser
|
||||
COMMAND $<TARGET_FILE:nurbs_surface> -no-vis
|
||||
-o 3 -nx 10 -ny 10 -fnx 40 -fny 14 -ex 1)
|
||||
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_MPI)
|
||||
|
||||
@@ -21,7 +21,7 @@ MFEM_LIB_FILE = mfem_is_not_built
|
||||
-include $(CONFIG_MK)
|
||||
|
||||
SEQ_MINIAPPS = nurbs_ex1 nurbs_patch_ex1 nurbs_ex3 nurbs_ex5 nurbs_ex24 \
|
||||
nurbs_curveint nurbs_printfunc nurbs_solenoidal nurbs_naca_cmesh
|
||||
nurbs_curveint nurbs_printfunc nurbs_solenoidal nurbs_naca_cmesh nurbs_surface
|
||||
PAR_MINIAPPS = nurbs_ex1p nurbs_ex11p
|
||||
ifeq ($(MFEM_USE_MPI),NO)
|
||||
MINIAPPS = $(SEQ_MINIAPPS)
|
||||
@@ -158,6 +158,13 @@ nurbs_naca_cmesh-test-seq: nurbs_naca_cmesh
|
||||
nurbs_printfunc-test-seq: nurbs_printfunc
|
||||
@$(call mfem-test,$<,, NURBS miniapp)
|
||||
|
||||
SURF_ARGS_1 := -o 3 -nx 10 -ny 10 -fnx 10 -fny 10 -ex 1 -orig
|
||||
SURF_ARGS_2 := -o 3 -nx 10 -ny 10 -fnx 40 -fny 40 -ex 1
|
||||
|
||||
nurbs_surface-test-seq: nurbs_surface
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(SURF_ARGS_1))
|
||||
@$(call mfem-test,$<,, NURBS miniapp,$(SURF_ARGS_2))
|
||||
|
||||
EX1P_ARGS_1 :=
|
||||
EX1P_ARGS_2 := -m ../../data/pipe-nurbs-2d.mesh -o 2 -no-ibp
|
||||
EX1P_ARGS_3 := -m ../../data/ball-nurbs.mesh -o 2 --weak-bc -r 0
|
||||
@@ -192,6 +199,6 @@ clean-build:
|
||||
|
||||
clean-exec:
|
||||
@rm -f refined.mesh sin-fit.mesh ex5.mesh exsol.mesh mesh.* sol.* mode_*
|
||||
@rm -f naca-cmesh.mesh sol_?.gf
|
||||
@rm -f naca-cmesh.mesh sol_?.gf *-Surface.mesh
|
||||
@rm -rf Example1* Example3* Example5* Solenoidal_* ParaView
|
||||
@rm -rf CurveInt Naca_cmesh glvis_naca-cmesh.mesh solution.dat
|
||||
|
||||
@@ -0,0 +1,655 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
//
|
||||
// --------------------------------------------------------
|
||||
// NURBS Surface: Interpolate a 3D Surface in a NURBS Patch
|
||||
// --------------------------------------------------------
|
||||
//
|
||||
// Compile with: make nurbs_surface
|
||||
//
|
||||
// Sample runs: nurbs_surface -o 3 -nx 10 -ny 10 -fnx 10 -fny 10 -ex 1 -orig
|
||||
// nurbs_surface -o 3 -nx 10 -ny 10 -fnx 40 -fny 40 -ex 1
|
||||
// nurbs_surface -o 3 -nx 20 -ny 20 -fnx 10 -fny 10 -ex 1
|
||||
// nurbs_surface -o 3 -nx 20 -ny 20 -fnx 40 -fny 40 -ex 1 -j 0.5
|
||||
// nurbs_surface -o 3 -nx 10 -ny 10 -fnx 10 -fny 10 -ex 2 -orig
|
||||
// nurbs_surface -o 3 -nx 10 -ny 10 -fnx 40 -fny 40 -ex 2
|
||||
// nurbs_surface -o 3 -nx 20 -ny 20 -fnx 10 -fny 10 -ex 2
|
||||
// nurbs_surface -o 3 -nx 10 -ny 10 -fnx 10 -fny 10 -ex 3 -orig
|
||||
// nurbs_surface -o 3 -nx 10 -ny 10 -fnx 40 -fny 40 -ex 3
|
||||
// nurbs_surface -o 3 -nx 20 -ny 20 -fnx 10 -fny 10 -ex 3
|
||||
// nurbs_surface -o 3 -nx 20 -ny 10 -fnx 20 -fny 10 -ex 4 -orig
|
||||
// * nurbs_surface -o 3 -nx 20 -ny 10 -fnx 80 -fny 40 -ex 4
|
||||
// * nurbs_surface -o 3 -nx 40 -ny 20 -fnx 20 -fny 10 -ex 4
|
||||
// * nurbs_surface -o 3 -nx 100 -ny 100 -fnx 100 -fny 100 -ex 5 -orig
|
||||
// * nurbs_surface -o 3 -nx 100 -ny 100 -fnx 400 -fny 400 -ex 5
|
||||
// * nurbs_surface -o 3 -nx 200 -ny 200 -fnx 100 -fny 100 -ex 5
|
||||
//
|
||||
// Description: This example demonstrates the use of MFEM to interpolate an
|
||||
// input surface point grid in 3D using a NURBS surface. The NURBS
|
||||
// surface can then be sampled to generate an output mesh of
|
||||
// arbitrary resolution while staying close to the input geometry.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
// Example data for 3D point grid on surface, given by an analytic function.
|
||||
void SurfaceGridExample(int example, int nx, int ny, Array3D<real_t> &vertices,
|
||||
real_t jitter);
|
||||
|
||||
// Write a linear surface mesh with given vertex positions in v.
|
||||
void WriteLinearMesh(int nx, int ny, const Array3D<real_t> &v,
|
||||
const std::string &basename, bool visualization = false,
|
||||
int x = 0, int y = 0, int w = 500, int h = 500);
|
||||
|
||||
// Given an input grid of 3D points on a surface, this class computes a NURBS
|
||||
// surface of given order that interpolates the vertices of the input grid.
|
||||
class SurfaceInterpolator
|
||||
{
|
||||
public:
|
||||
/// Constructor for a given 2D point grid size and NURBS order.
|
||||
SurfaceInterpolator(int num_elem_x, int num_elem_y, int order);
|
||||
|
||||
/// Create a surface interpolating the 2D grid of 3D points in @a input3D.
|
||||
void CreateSurface(const Array3D<real_t> &input3D);
|
||||
|
||||
/// Sample the surface with the given grid size, storing points in
|
||||
/// @a output3D.
|
||||
void SampleSurface(int num_elem_x, int num_elem_y, bool compareOriginal,
|
||||
Array3D<real_t> &output3D);
|
||||
|
||||
/** @brief Write the NURBS surface mesh to file, defined coordinate-wise by
|
||||
the entries of @a cmesh. */
|
||||
void WriteNURBSMesh(const std::string &basename, bool visualization = false,
|
||||
int x = 0, int y = 0, int w = 500, int h = 500);
|
||||
|
||||
protected:
|
||||
/** @brief Compute the NURBS mesh interpolating the given coordinate of the
|
||||
grid of 3D points in @a input3D. */
|
||||
void ComputeNURBS(int coordinate, const Array3D<real_t> &input3D);
|
||||
|
||||
private:
|
||||
int nx, ny; // Number of elements in two directions of the surface grid
|
||||
int orderNURBS; // NURBS degree
|
||||
real_t hx, hy, hz; // Grid size in reference space
|
||||
|
||||
Array3D<real_t> initial3D; // Initial grid of points
|
||||
|
||||
static constexpr int dim = 3;
|
||||
Array<int> ncp; // Number of control points in each direction
|
||||
Array<int> nks; // Number of knot-spans in each direction
|
||||
|
||||
std::vector<Vector> ugrid; // Parameter space [0,1]^2 grid point coordinates
|
||||
|
||||
std::vector<KnotVector> kv; // KnotVectors in each direction
|
||||
|
||||
std::unique_ptr<NURBSPatch> patch; // Pointer to the only patch in the mesh
|
||||
|
||||
Mesh mesh; // NURBS mesh representing the surface
|
||||
std::vector<Mesh> cmesh; // NURBS meshes representing point components
|
||||
};
|
||||
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// Parse command-line options
|
||||
int nx = 4;
|
||||
int ny = 4;
|
||||
int fnx = 40;
|
||||
int fny = 40;
|
||||
int order = 3;
|
||||
int example = 1;
|
||||
bool visualization = true;
|
||||
bool compareOriginal = false;
|
||||
real_t jitter = 0.0;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&example, "-ex", "--example",
|
||||
"Example data");
|
||||
args.AddOption(&nx, "-nx", "--nx",
|
||||
"Number of elements in x");
|
||||
args.AddOption(&ny, "-ny", "--ny",
|
||||
"Number of elements in y");
|
||||
args.AddOption(&fnx, "-fnx", "--fnx",
|
||||
"Number of resampled elements in x");
|
||||
args.AddOption(&fny, "-fny", "--fny",
|
||||
"Number of resampled elements in y");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"NURBS finite element order (polynomial degree)");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&compareOriginal, "-orig", "--compare-original", "-no-orig",
|
||||
"--no-compare-original",
|
||||
"Compare to the original mesh?");
|
||||
args.AddOption(&jitter, "-j", "--jitter",
|
||||
"Relative jittering in (0,1) to add to the input point "
|
||||
"coordinates on a uniform nx x ny grid (0 by default)");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
if (compareOriginal && (fnx != nx || fny != ny))
|
||||
{
|
||||
cout << "Comparing to the original mesh requires the same number of "
|
||||
<< "samples!\n";
|
||||
return 1;
|
||||
}
|
||||
|
||||
// Dimensions of the 3 surfaces (Input, NURBS, Output)
|
||||
cout << "Input Surface: " << nx << " x " << ny << " linear elements\n";
|
||||
cout << "NURBS Surface: " << nx + 1 - order << " x " << ny + 1 - order
|
||||
<< " knot elements of order " << order << "\n";
|
||||
cout << "Output Surface: " << fnx << " x " << fny << " linear elements\n";
|
||||
|
||||
// Set the vertex coordinates of the initial linear mesh
|
||||
constexpr int dim = 3;
|
||||
Array3D<real_t> input3D(nx + 1, ny + 1, dim);
|
||||
SurfaceGridExample(example, nx, ny, input3D, jitter);
|
||||
|
||||
// Create a NURBS surface for the given nx, ny and order parameters that
|
||||
// interpolates the input vertex coordinates
|
||||
SurfaceInterpolator surf(nx, ny, order);
|
||||
surf.CreateSurface(input3D);
|
||||
|
||||
// Compute the vertex coordinates of the output linear mesh by sampling the
|
||||
// values from the NURBS surface
|
||||
Array3D<real_t> output3D(fnx + 1, fny + 1, dim);
|
||||
surf.SampleSurface(fnx, fny, compareOriginal, output3D);
|
||||
|
||||
// Save and optionally visualize the 3 surfaces (Input, NURBS, Output)
|
||||
WriteLinearMesh(nx, ny, input3D, "Input-Surface", visualization, 0, 0);
|
||||
surf.WriteNURBSMesh("NURBS-Surface", visualization, 502, 0);
|
||||
WriteLinearMesh(fnx, fny, output3D, "Output-Surface", visualization, 1004, 0);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
// f(x,y) = sin(2 * pi * x) * sin(2 * pi * y)
|
||||
void Function1(real_t u, real_t v, real_t &x, real_t &y, real_t &z)
|
||||
{
|
||||
x = u;
|
||||
y = v;
|
||||
z = sin(2.0 * M_PI * u) * sin(2.0 * M_PI * v);
|
||||
}
|
||||
|
||||
// Part of the parametric surface of a sphere, using spherical coordinates.
|
||||
void Function2(real_t u, real_t v, real_t &x, real_t &y, real_t &z)
|
||||
{
|
||||
constexpr real_t r = 1.0;
|
||||
constexpr real_t pi_4 = M_PI * 0.25;
|
||||
constexpr real_t phi0 = -3*pi_4;
|
||||
constexpr real_t phi1 = 3*pi_4;
|
||||
constexpr real_t theta0 = pi_4;
|
||||
constexpr real_t theta1 = 3 * pi_4;
|
||||
|
||||
const real_t phi = (phi0 * (1.0 - v)) + (phi1 * v);
|
||||
const real_t theta = (theta0 * (1.0 - u)) + (theta1 * u);
|
||||
x = r * sin(theta) * cos(phi);
|
||||
y = r * sin(theta) * sin(phi);
|
||||
z = r * cos(theta);
|
||||
}
|
||||
|
||||
// Helicoid surface
|
||||
void Function3(real_t u, real_t v, real_t &x, real_t &y, real_t &z)
|
||||
{
|
||||
x = u * cos(2.0 * M_PI * v);
|
||||
y = u * sin(2.0 * M_PI * v);
|
||||
z = v;
|
||||
}
|
||||
|
||||
// Mobius strip
|
||||
void Function4(real_t u, real_t v, real_t &x, real_t &y, real_t &z)
|
||||
{
|
||||
constexpr int twists = 1;
|
||||
const real_t a = 1.0 + 0.5 * ((2.0 * v) - 1.0) * cos(2.0 * M_PI * twists * u);
|
||||
x = a * cos(2.0 * M_PI * u);
|
||||
y = a * sin(2.0 * M_PI * u);
|
||||
z = 0.5 * (2.0 * v - 1.0) * sin(2.0 * M_PI * twists * u);
|
||||
}
|
||||
|
||||
// Breather surface
|
||||
void Function5(real_t u, real_t v, real_t &x, real_t &y, real_t &z)
|
||||
{
|
||||
const real_t m = 13.2 * ((2.0 * u) - 1.0);
|
||||
const real_t n = 37.4 * ((2.0 * v) - 1.0);
|
||||
constexpr real_t b = 0.4;
|
||||
constexpr real_t r = 1.0 - (b*b);
|
||||
const real_t w = sqrt(r);
|
||||
const real_t denom = b * (pow(w*cosh(b*m),2) + pow(b*sin(w*n),2));
|
||||
x = -m + (2*r*cosh(b*m)*sinh(b*m)) / denom;
|
||||
y = (2*w*cosh(b*m)*(-(w*cos(n)*cos(w*n)) - sin(n)*sin(w*n))) / denom;
|
||||
z = (2*w*cosh(b*m)*(-(w*sin(n)*cos(w*n)) + cos(n)*sin(w*n))) / denom;
|
||||
}
|
||||
|
||||
void SurfaceFunction(int example, real_t u, real_t v,
|
||||
real_t &x, real_t &y, real_t &z)
|
||||
{
|
||||
switch (example)
|
||||
{
|
||||
case 1:
|
||||
Function1(u, v, x, y, z);
|
||||
break;
|
||||
case 2:
|
||||
Function2(u, v, x, y, z);
|
||||
break;
|
||||
case 3:
|
||||
Function3(u, v, x, y, z);
|
||||
break;
|
||||
case 4:
|
||||
Function4(u, v, x, y, z);
|
||||
break;
|
||||
default:
|
||||
Function5(u, v, x, y, z);
|
||||
};
|
||||
}
|
||||
|
||||
// Example data for 3D point grid on surface, given by an analytic function.
|
||||
void SurfaceExample(int example, const std::vector<Vector> &grid,
|
||||
Array3D<real_t> &v3D, real_t jitter)
|
||||
{
|
||||
int seed = (int)time(0);
|
||||
srand((unsigned)seed);
|
||||
|
||||
real_t h0 = grid[0][1]-grid[0][0], h1 = grid[1][1]-grid[1][0];
|
||||
for (int i = 0; i < grid[0].Size(); i++)
|
||||
{
|
||||
for (int j = 0; j < grid[1].Size(); j++)
|
||||
{
|
||||
if (i != 0 && i != grid[0].Size()-1 && j != 0 && j != grid[1].Size()-1)
|
||||
{
|
||||
SurfaceFunction(example, grid[0][i] + rand_real()*h0*jitter,
|
||||
grid[1][j] + rand_real()*h1*jitter,
|
||||
v3D(i, j, 0), v3D(i, j, 1), v3D(i, j, 2));
|
||||
}
|
||||
else
|
||||
{
|
||||
SurfaceFunction(example, grid[0][i], grid[1][j],
|
||||
v3D(i, j, 0), v3D(i, j, 1), v3D(i, j, 2));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void SurfaceGridExample(int example, int nx, int ny, Array3D<real_t> &vertices,
|
||||
real_t jitter = 0)
|
||||
{
|
||||
// Define a uniform grid of the reference parameter space [0,1]^2
|
||||
std::vector<Vector> uniformGrid(2);
|
||||
for (int i = 0; i < 2; ++i)
|
||||
{
|
||||
const int n = (i == 0) ? nx : ny;
|
||||
const real_t h = 1.0 / n;
|
||||
uniformGrid[i].SetSize(n + 1);
|
||||
for (int j = 0; j <= n; ++j) { uniformGrid[i][j] = j * h; }
|
||||
}
|
||||
|
||||
SurfaceExample(example, uniformGrid, vertices, jitter);
|
||||
}
|
||||
|
||||
// Write a linear surface mesh with given vertex positions in v.
|
||||
void WriteLinearMesh(int nx, int ny, const Array3D<real_t> &v,
|
||||
const std::string &basename, bool visualization,
|
||||
int x, int y, int w, int h)
|
||||
{
|
||||
const int nv = (nx + 1) * (ny + 1);
|
||||
const int nelem = nx * ny;
|
||||
constexpr int dim = 3; // Spatial dimension
|
||||
|
||||
Mesh lmesh(2, nv, nelem, 0, dim);
|
||||
Vector vertex(dim);
|
||||
|
||||
for (int i = 0; i <= nx; ++i)
|
||||
{
|
||||
for (int j = 0; j <= ny; ++j)
|
||||
{
|
||||
for (int k = 0; k < dim; ++k) { vertex[k] = v(i, j, k); }
|
||||
lmesh.AddVertex(vertex);
|
||||
}
|
||||
}
|
||||
|
||||
Array<int> verts(4);
|
||||
|
||||
auto vID = [&](int i, int j)
|
||||
{
|
||||
return j + (i * (ny + 1));
|
||||
};
|
||||
|
||||
for (int i = 0; i < nx; ++i)
|
||||
{
|
||||
for (int j = 0; j < ny; ++j)
|
||||
{
|
||||
verts[0] = vID(i, j);
|
||||
verts[1] = vID(i+1, j);
|
||||
verts[2] = vID(i+1, j+1);
|
||||
verts[3] = vID(i, j+1);
|
||||
|
||||
Element* el = lmesh.NewElement(Element::QUADRILATERAL);
|
||||
el->SetVertices(verts);
|
||||
lmesh.AddElement(el);
|
||||
}
|
||||
}
|
||||
|
||||
lmesh.FinalizeTopology();
|
||||
|
||||
ofstream mesh_ofs(basename + ".mesh");
|
||||
mesh_ofs.precision(8);
|
||||
lmesh.Print(mesh_ofs);
|
||||
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
constexpr int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "mesh\n" << lmesh
|
||||
<< "window_title '" << basename << "'"
|
||||
<< "window_geometry "
|
||||
<< x << " " << y << " " << w << " " << h << "\n"
|
||||
<< "keys PPPPPPPPAattttt******\n"
|
||||
<< flush;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
// Compute error of interpolation with respect to an input grid of point data.
|
||||
void CheckError(const Array3D<real_t> &a, const Array3D<real_t> &b, int c,
|
||||
int nx, int ny)
|
||||
{
|
||||
real_t maxErr = 0.0;
|
||||
for (int i = 0; i <= nx; ++i)
|
||||
{
|
||||
for (int j = 0; j <= ny; ++j)
|
||||
{
|
||||
const real_t err_ij = std::abs(a(i, j, c) - b(i, j, 2));
|
||||
maxErr = std::max(maxErr, err_ij);
|
||||
}
|
||||
}
|
||||
|
||||
cout << "Max error: " << maxErr << " for coordinate " << c << endl;
|
||||
}
|
||||
|
||||
|
||||
// Sample a NURBS mesh to generate a first-order mesh.
|
||||
void SampleNURBS(bool uniform, int nx, int ny, const Mesh &mesh,
|
||||
const Array<int> &nks, const std::vector<Vector> &ugrid,
|
||||
Array3D<real_t> &vpos)
|
||||
{
|
||||
const GridFunction *nodes = mesh.GetNodes();
|
||||
|
||||
const real_t hx = 1.0 / (real_t) nx;
|
||||
const real_t hy = 1.0 / (real_t) ny;
|
||||
|
||||
const real_t hxks = 1.0 / (real_t) nks[0];
|
||||
const real_t hyks = 1.0 / (real_t) nks[1];
|
||||
|
||||
Vector vertex;
|
||||
IntegrationPoint ip;
|
||||
|
||||
ip.z = 1.0;
|
||||
for (int i = 0; i <= nx; ++i)
|
||||
{
|
||||
const real_t xref = uniform ? i * hx : ugrid[0][i];
|
||||
const int nurbsElem0 = std::min((int) (xref / hxks), nks[0] - 1);
|
||||
const real_t ipx = (xref - (nurbsElem0 * hxks)) / hxks;
|
||||
ip.x = ipx;
|
||||
|
||||
for (int j = 0; j <= ny; ++j)
|
||||
{
|
||||
const real_t yref = uniform ? j * hy : ugrid[1][j];
|
||||
const int nurbsElem1 = std::min((int) (yref / hyks), nks[1] - 1);
|
||||
const real_t ipy = (yref - (nurbsElem1 * hyks)) / hyks;
|
||||
ip.y = ipy;
|
||||
|
||||
const int nurbsElem = nurbsElem0 + (nurbsElem1 * nks[0]);
|
||||
nodes->GetVectorValue(nurbsElem, ip, vertex);
|
||||
|
||||
for (int k = 0; k < 3; ++k)
|
||||
{
|
||||
vpos(i, j, k) = vertex[k];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
SurfaceInterpolator::SurfaceInterpolator(int num_elem_x, int num_elem_y,
|
||||
int order) :
|
||||
nx(num_elem_x), ny(num_elem_y), orderNURBS(order),
|
||||
ncp(dim), nks(dim), ugrid(dim - 1)
|
||||
{
|
||||
ncp[0] = nx + 1;
|
||||
ncp[1] = ny + 1;
|
||||
ncp[2] = order + 1;
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
nks[i] = ncp[i] - order;
|
||||
|
||||
Vector intervals(nks[i]);
|
||||
Array<int> continuity(nks[i] + 1);
|
||||
|
||||
intervals = 1.0 / (real_t) nks[i];
|
||||
continuity = order - 1;
|
||||
continuity[0] = -1;
|
||||
continuity[nks[i]] = -1;
|
||||
|
||||
kv.emplace_back(order, intervals, continuity);
|
||||
}
|
||||
|
||||
patch.reset(new NURBSPatch(&kv[0], &kv[1], &kv[2], dim + 1));
|
||||
|
||||
hx = 1.0 / (real_t) (ncp[0] - 1);
|
||||
hy = 1.0 / (real_t) (ncp[1] - 1);
|
||||
hz = 1.0 / (real_t) (ncp[2] - 1);
|
||||
|
||||
Vector xi_args;
|
||||
Array<int> i_args;
|
||||
for (int i = 0; i < 2; ++i)
|
||||
{
|
||||
kv[i].FindMaxima(i_args, xi_args, ugrid[i]);
|
||||
}
|
||||
}
|
||||
|
||||
void SurfaceInterpolator::CreateSurface(const Array3D<real_t> &input3D)
|
||||
{
|
||||
cmesh.clear();
|
||||
for (int c = 0; c < dim; ++c) // Loop over coordinates
|
||||
{
|
||||
ComputeNURBS(c, input3D);
|
||||
cmesh.emplace_back(mesh);
|
||||
}
|
||||
|
||||
initial3D = input3D;
|
||||
}
|
||||
|
||||
void SurfaceInterpolator::SampleSurface(int num_elem_x, int num_elem_y,
|
||||
bool compareOriginal,
|
||||
Array3D<real_t> &output3D)
|
||||
{
|
||||
Array3D<real_t> vpos(num_elem_x + 1, num_elem_y + 1, dim);
|
||||
for (int c = 0; c < dim; ++c) // Loop over coordinates
|
||||
{
|
||||
SampleNURBS(true, num_elem_x, num_elem_y, cmesh[c], nks, ugrid, vpos);
|
||||
|
||||
if (compareOriginal)
|
||||
{
|
||||
SampleNURBS(false, num_elem_x, num_elem_y, cmesh[c], nks, ugrid, vpos);
|
||||
CheckError(initial3D, vpos, c, nx, ny);
|
||||
}
|
||||
|
||||
for (int i = 0; i <= num_elem_x; ++i)
|
||||
{
|
||||
for (int j = 0; j <= num_elem_y; ++j)
|
||||
{
|
||||
output3D(i,j,c) = vpos(i,j,2);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void SurfaceInterpolator::ComputeNURBS(int coordinate,
|
||||
const Array3D<real_t> &input3D)
|
||||
{
|
||||
Array<Vector*> x;
|
||||
for (int i = 0; i < dim; ++i) { x.Append(new Vector(ncp[0])); }
|
||||
|
||||
for (int k = 0; k < ncp[2]; ++k)
|
||||
{
|
||||
const real_t z = k * hz;
|
||||
|
||||
// For each horizontal slice (fixed k), interpolate a 2D surface by
|
||||
// sweeping curve interpolations in each direction. See Algorithm A9.4 of
|
||||
// "The NURBS Book" - 2nd ed - Piegl and Tiller.
|
||||
|
||||
// Resize for sweep in first direction
|
||||
for (int i = 0; i < dim; ++i) { x[i]->SetSize(ncp[0]); }
|
||||
|
||||
// Sweep in the first direction
|
||||
for (int j = 0; j < ncp[1]; ++j)
|
||||
{
|
||||
for (int i = 0; i < ncp[0]; i++)
|
||||
{
|
||||
(*x[0])[i] = ugrid[0][i];
|
||||
(*x[1])[i] = ugrid[1][j];
|
||||
|
||||
const real_t s_ij = input3D(i, j, coordinate);
|
||||
(*x[2])[i] = -1.0 + z + s_ij;
|
||||
}
|
||||
|
||||
const bool reuse_factorization = j > 0;
|
||||
kv[0].FindInterpolant(x, reuse_factorization);
|
||||
|
||||
for (int i = 0; i < ncp[0]; i++)
|
||||
{
|
||||
(*patch)(i,j,k,0) = (*x[0])[i];
|
||||
(*patch)(i,j,k,1) = (*x[1])[i];
|
||||
(*patch)(i,j,k,2) = (*x[2])[i];
|
||||
(*patch)(i,j,k,3) = 1.0; // weight
|
||||
}
|
||||
}
|
||||
|
||||
// Resize for sweep in second direction
|
||||
for (int i = 0; i < dim; ++i) { x[i]->SetSize(ncp[1]); }
|
||||
|
||||
// Do another sweep in the second direction
|
||||
for (int i = 0; i < ncp[0]; i++)
|
||||
{
|
||||
for (int j = 0; j < ncp[1]; ++j)
|
||||
{
|
||||
(*x[0])[j] = (*patch)(i,j,k,0);
|
||||
(*x[1])[j] = (*patch)(i,j,k,1);
|
||||
(*x[2])[j] = (*patch)(i,j,k,2);
|
||||
}
|
||||
|
||||
const bool reuse_factorization = i > 0;
|
||||
kv[1].FindInterpolant(x, reuse_factorization);
|
||||
|
||||
for (int j = 0; j < ncp[1]; ++j)
|
||||
{
|
||||
(*patch)(i,j,k,0) = (*x[0])[j];
|
||||
(*patch)(i,j,k,1) = (*x[1])[j];
|
||||
(*patch)(i,j,k,2) = (*x[2])[j];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (auto p : x) { delete p; }
|
||||
|
||||
Array<const NURBSPatch*> patches(1);
|
||||
patches[0] = patch.get();
|
||||
Mesh patch_topology = Mesh::MakeCartesian3D(1, 1, 1, Element::HEXAHEDRON);
|
||||
NURBSExtension nurbsExt(&patch_topology, patches);
|
||||
|
||||
mesh = Mesh(nurbsExt);
|
||||
}
|
||||
|
||||
void SurfaceInterpolator::WriteNURBSMesh(const std::string &basename,
|
||||
bool visualization,
|
||||
int x, int y, int w, int h)
|
||||
{
|
||||
GridFunction *nodes = cmesh[0].GetNodes();
|
||||
NURBSPatch patch2D(&kv[0], &kv[1], dim);
|
||||
Array<const NURBSPatch*> patches(1);
|
||||
patches[0] = &patch2D;
|
||||
Mesh patch_topology = Mesh::MakeCartesian2D(1, 1, Element::QUADRILATERAL);
|
||||
Array<int> dofs;
|
||||
cmesh[0].NURBSext->GetPatchDofs(0, dofs);
|
||||
|
||||
MFEM_VERIFY(dofs.Size() == (nx + 1) * (ny + 1) * (orderNURBS + 1), "");
|
||||
|
||||
for (int j = 0; j < ncp[1]; ++j)
|
||||
{
|
||||
for (int i = 0; i < ncp[0]; i++)
|
||||
{
|
||||
const int dof = dofs[i + (ncp[0] * (j + (ncp[1] * orderNURBS)))];
|
||||
for (int k = 0; k < 2; ++k) { patch2D(i,j,k) = (*nodes)[dim*dof + k]; }
|
||||
patch2D(i,j,2) = 1.0; // weight
|
||||
}
|
||||
}
|
||||
|
||||
NURBSExtension nurbsExt(&patch_topology, patches);
|
||||
Mesh mesh2D(nurbsExt);
|
||||
|
||||
FiniteElementCollection *fec = nodes->OwnFEC();
|
||||
FiniteElementSpace fespace(&mesh2D, fec, dim, Ordering::byVDIM);
|
||||
GridFunction nodes2D(&fespace);
|
||||
|
||||
const int n = mesh2D.GetNodes()->Size() / (dim - 1);
|
||||
MFEM_VERIFY((dim - 1) * n == mesh2D.GetNodes()->Size(), "");
|
||||
MFEM_VERIFY(dim * n == nodes2D.Size(), "");
|
||||
|
||||
Array<int> dofs2D;
|
||||
mesh2D.NURBSext->GetPatchDofs(0, dofs2D);
|
||||
|
||||
for (int k = 0; k < dim; ++k)
|
||||
{
|
||||
const GridFunction &nodes_k = *cmesh[k].GetNodes();
|
||||
|
||||
for (int j = 0; j < ncp[1]; ++j)
|
||||
{
|
||||
for (int i = 0; i < ncp[0]; i++)
|
||||
{
|
||||
const int dof = dofs[i + (ncp[0] * (j + (ncp[1] * orderNURBS)))];
|
||||
const int dof2D = dofs2D[i + (ncp[0] * j)];
|
||||
nodes2D[(dim*dof2D) + k] = nodes_k[dim*dof + 2];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Make mesh2D into a surface mesh with nodes given by nodes2D
|
||||
mesh2D.NewNodes(nodes2D);
|
||||
|
||||
ofstream mesh_ofs(basename + ".mesh");
|
||||
mesh_ofs.precision(8);
|
||||
mesh2D.Print(mesh_ofs);
|
||||
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
constexpr int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "mesh\n" << mesh2D
|
||||
<< "window_title '" << basename << "'"
|
||||
<< "window_geometry "
|
||||
<< x << " " << y << " " << w << " " << h << "\n"
|
||||
<< "keys PPPPPPPPAattttt******\n"
|
||||
<< flush;
|
||||
}
|
||||
}
|
||||
@@ -105,8 +105,11 @@ MFEM_PERF_CXXFLAGS_xlc = -mcpu=native
|
||||
# - Clang extra options:
|
||||
ifeq ($(MFEM_MACHINE),riscv64)
|
||||
MFEM_PERF_CXXFLAGS_clang += -march=rv64gc
|
||||
else ifneq ($(MFEM_MACHINE),arm64)
|
||||
# -march=native is unavailable on clang/ARM64 as of 05/2021: support could be added later.
|
||||
else ifneq (,$(findstring ppc,$(MFEM_MACHINE)))
|
||||
MFEM_PERF_CXXFLAGS_clang += -mcpu=native -mtune=native
|
||||
else ifeq ($(MFEM_MACHINE),arm64)
|
||||
MFEM_PERF_CXXFLAGS_clang += -mcpu=native -mtune=native
|
||||
else
|
||||
MFEM_PERF_CXXFLAGS_clang += -march=native
|
||||
endif
|
||||
MFEM_PERF_CXXFLAGS_clang += $(PEDANTIC_FLAG) -Wall
|
||||
|
||||
@@ -384,8 +384,10 @@ int main(int argc, char *argv[])
|
||||
dacol.Save();
|
||||
|
||||
ConstantCoefficient zero(0.0);
|
||||
Vector zero_vec(dim); zero_vec = 0_r;
|
||||
VectorConstantCoefficient vzero(zero_vec);
|
||||
const real_t s_norm = distance_s.ComputeL2Error(zero),
|
||||
v_norm = distance_v.ComputeL2Error(zero);
|
||||
v_norm = distance_v.ComputeL2Error(vzero);
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << fixed << setprecision(10) << "Norms: "
|
||||
|
||||
@@ -235,7 +235,7 @@ void test_derefine_L2_element(int order, Element::Type el_type, int basis_type)
|
||||
}
|
||||
}
|
||||
|
||||
TEST_CASE("AMR Coarsen L2 Element","[AMR][Coarsen]")
|
||||
TEST_CASE("AMR Coarsen L2 Element","[AMR][Coarsen][CUDA]")
|
||||
{
|
||||
std::vector<int> orders_1d{0,1,2,3};
|
||||
std::vector<int> orders_2d{0,1,2,3};
|
||||
@@ -420,7 +420,7 @@ void stress_parallel_coarsen(int order, Element::Type el_type, int basis_type)
|
||||
#endif
|
||||
}
|
||||
|
||||
TEST_CASE("Parallel AMR Coarsen Stress Test", "[AMR][Coarsen][Parallel]")
|
||||
TEST_CASE("Parallel AMR Coarsen Stress Test", "[AMR][Coarsen][Parallel][CUDA]")
|
||||
{
|
||||
std::vector<int> orders_1d{0,1,2,3};
|
||||
std::vector<int> orders_2d{0,1,2,3};
|
||||
@@ -482,7 +482,7 @@ TEST_CASE("Parallel AMR Coarsen Stress Test", "[AMR][Coarsen][Parallel]")
|
||||
|
||||
}
|
||||
|
||||
TEST_CASE("ParDerefine", "[Parallel]")
|
||||
TEST_CASE("ParDerefine", "[Parallel][CUDA]")
|
||||
{
|
||||
for (dimension = 2; dimension <= 3; ++dimension)
|
||||
{
|
||||
|
||||
Reference in New Issue
Block a user