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+2
-3
@@ -23,9 +23,8 @@ install:
|
||||
- set MSMPI_LIB64=C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x64
|
||||
- set MSMPI_INC=C:\Program Files (x86)\Microsoft SDKs\MPI\Include
|
||||
|
||||
# Install METIS, use a mirror because the original source server is not always
|
||||
# up. Original url:
|
||||
# http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz
|
||||
# Install METIS, use MFEM's mirror because the original source server is often
|
||||
# down and we don't support yet the new repo https://github.com/KarypisLab/METIS
|
||||
- ps: Start-FileDownload 'https://mfem.github.io/tpls/metis-5.1.0.tar.gz'
|
||||
- 7z x metis-5.1.0.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd metis-5.1.0
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
name: Build Deploy Container
|
||||
name: "Docker"
|
||||
|
||||
on:
|
||||
|
||||
@@ -20,6 +20,7 @@ on:
|
||||
|
||||
jobs:
|
||||
build:
|
||||
if: github.repository == 'mfem/mfem' # Don't run in forks
|
||||
permissions:
|
||||
packages: write
|
||||
strategy:
|
||||
@@ -27,7 +28,8 @@ jobs:
|
||||
matrix:
|
||||
|
||||
# Dockerfiles to build, a matrix supports future expanded builds
|
||||
container: [["config/docker/Dockerfile", "ghcr.io/mfem/mfem-ubuntu-base"]]
|
||||
container: [["config/docker/Dockerfile.base", "ghcr.io/mfem/mfem-ubuntu-base"],
|
||||
["config/docker/Dockerfile", "ghcr.io/mfem/mfem-ubuntu"]]
|
||||
|
||||
runs-on: ubuntu-latest
|
||||
name: Build
|
||||
|
||||
@@ -10,7 +10,7 @@
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# In this CI section, we build different variants of mfem and run test on them.
|
||||
name: builds-and-tests
|
||||
name: "Tests"
|
||||
|
||||
# Github actions can use the default "GITHUB_TOKEN". By default, this token
|
||||
# is set to have permissive access. However, this is not a good practice
|
||||
@@ -47,17 +47,17 @@ jobs:
|
||||
builds-and-tests:
|
||||
strategy:
|
||||
matrix:
|
||||
os: [ubuntu-20.04, macos-10.15, windows-2022]
|
||||
os: [ubuntu-latest, macos-latest, windows-latest]
|
||||
target: [dbg, opt]
|
||||
mpi: [seq, par]
|
||||
build-system: [make, cmake]
|
||||
hypre-target: [int32]
|
||||
exclude:
|
||||
- os: ubuntu-20.04
|
||||
- os: ubuntu-latest
|
||||
build-system: cmake
|
||||
- os: macos-10.15
|
||||
- os: macos-latest
|
||||
build-system: cmake
|
||||
- os: windows-2022
|
||||
- os: windows-latest
|
||||
build-system: make
|
||||
# 'include' allows us to:
|
||||
# - Add a variable to all jobs without creating a new matrix dimension.
|
||||
@@ -72,15 +72,15 @@ jobs:
|
||||
codecov: NO
|
||||
- target: opt
|
||||
codecov: YES
|
||||
- os: windows-2022
|
||||
- os: windows-latest
|
||||
codecov: NO
|
||||
- os: ubuntu-20.04
|
||||
- os: ubuntu-latest
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: cmake
|
||||
hypre-target: int32
|
||||
- os: ubuntu-20.04
|
||||
- os: ubuntu-latest
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
@@ -112,35 +112,35 @@ jobs:
|
||||
# TODO: It would be nice to have only one step, e.g. with a dedicated
|
||||
# action, but I (@adrienbernede) don't see how at the moment.
|
||||
- name: get MPI (Linux)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-20.04'
|
||||
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
sudo apt-get install mpich libmpich-dev
|
||||
export MAKE_CXX_FLAG="MPICXX=mpic++"
|
||||
|
||||
- name: get lcov (Linux)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-20.04'
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
sudo apt-get install lcov
|
||||
|
||||
- name: Set up Homebrew
|
||||
if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-10.15'
|
||||
if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-latest'
|
||||
uses: Homebrew/actions/setup-homebrew@c4aafe8c4620bf08883dd4679c374f11e73329d3
|
||||
|
||||
- name: get MPI (MacOS)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'macos-10.15'
|
||||
if: matrix.mpi == 'par' && matrix.os == 'macos-latest'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew install openmpi
|
||||
export MAKE_CXX_FLAG="MPICXX=mpic++"
|
||||
|
||||
- name: get MPI (MacOS)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'macos-10.15'
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'macos-latest'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew install lcov
|
||||
|
||||
- name: get MPI (Windows)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'windows-2022'
|
||||
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
|
||||
uses: mpi4py/setup-mpi@v1.0.3
|
||||
|
||||
# Get Hypre through cache, or build it.
|
||||
@@ -154,7 +154,7 @@ jobs:
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
|
||||
|
||||
- name: get hypre
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-2022'
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.2
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
@@ -163,7 +163,7 @@ jobs:
|
||||
build-system: make
|
||||
|
||||
- name: get hypre (Windows)
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-2022'
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.2
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
@@ -175,14 +175,14 @@ jobs:
|
||||
# Install will only run on cache miss.
|
||||
- name: cache metis
|
||||
id: metis-cache
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-2022'
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
|
||||
|
||||
- name: install metis
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-2022' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.2
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
@@ -196,16 +196,16 @@ jobs:
|
||||
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
|
||||
|
||||
- name: prepare binary cache location
|
||||
if: matrix.os == 'windows-2022' && steps.vcpkg-cache.outputs.cache-hit != 'true'
|
||||
if: matrix.os == 'windows-latest' && steps.vcpkg-cache.outputs.cache-hit != 'true'
|
||||
run: |
|
||||
mkdir -p vcpkg_cache
|
||||
|
||||
- name: install metis (Windows)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'windows-2022'
|
||||
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
run: |
|
||||
vcpkg install metis --triplet=x64-windows-static
|
||||
vcpkg install metis-mfem --triplet=x64-windows-static --overlay-ports=${{ env.MFEM_TOP_DIR }}/config/vcpkg/ports
|
||||
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
@@ -248,7 +248,7 @@ jobs:
|
||||
shell: bash
|
||||
|
||||
- name: cmake unit tests (Ubuntu 20.04)
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-20.04'
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
CTEST_CONFIG="Release"
|
||||
[[ ${{ matrix.target }} == 'dbg' ]] && CTEST_CONFIG="Debug"
|
||||
@@ -256,7 +256,7 @@ jobs:
|
||||
shell: bash
|
||||
|
||||
- name: cmake tests
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-20.04'
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
|
||||
run: |
|
||||
CTEST_CONFIG="Release"
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build && ctest --output-on-failure -C ${CTEST_CONFIG}
|
||||
|
||||
@@ -0,0 +1,70 @@
|
||||
# For most projects, this workflow file will not need changing; you simply need
|
||||
# to commit it to your repository.
|
||||
#
|
||||
# You may wish to alter this file to override the set of languages analyzed,
|
||||
# or to provide custom queries or build logic.
|
||||
#
|
||||
# ******** NOTE ********
|
||||
# We have attempted to detect the languages in your repository. Please check
|
||||
# the `language` matrix defined below to confirm you have the correct set of
|
||||
# supported CodeQL languages.
|
||||
#
|
||||
name: "Static Analysis"
|
||||
|
||||
on:
|
||||
push:
|
||||
branches: [ "master", "next"]
|
||||
pull_request:
|
||||
# The branches below must be a subset of the branches above
|
||||
branches: [ "master" ]
|
||||
|
||||
jobs:
|
||||
analyze:
|
||||
name: Analyze
|
||||
runs-on: ubuntu-latest
|
||||
permissions:
|
||||
actions: read
|
||||
contents: read
|
||||
security-events: write
|
||||
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
language: [ 'cpp' ]
|
||||
# CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ]
|
||||
# Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
|
||||
|
||||
steps:
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v3
|
||||
|
||||
# Initializes the CodeQL tools for scanning.
|
||||
- name: Initialize CodeQL
|
||||
uses: github/codeql-action/init@v2
|
||||
with:
|
||||
languages: ${{ matrix.language }}
|
||||
# If you wish to specify custom queries, you can do so here or in a config file.
|
||||
# By default, queries listed here will override any specified in a config file.
|
||||
# Prefix the list here with "+" to use these queries and those in the config file.
|
||||
|
||||
# Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
|
||||
# queries: security-extended,security-and-quality
|
||||
|
||||
|
||||
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
|
||||
# If this step fails, then you should remove it and run the build manually (see below)
|
||||
- name: Autobuild
|
||||
uses: github/codeql-action/autobuild@v2
|
||||
|
||||
# ℹ️ Command-line programs to run using the OS shell.
|
||||
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
|
||||
|
||||
# If the Autobuild fails above, remove it and uncomment the following three lines.
|
||||
# modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
|
||||
|
||||
# - run: |
|
||||
# echo "Run, Build Application using script"
|
||||
# ./location_of_script_within_repo/buildscript.sh
|
||||
|
||||
- name: Perform CodeQL Analysis
|
||||
uses: github/codeql-action/analyze@v2
|
||||
@@ -9,7 +9,7 @@
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: build-analysis
|
||||
name: "Build Analysis"
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
@@ -31,7 +31,7 @@ env:
|
||||
|
||||
jobs:
|
||||
gitignore:
|
||||
runs-on: ubuntu-18.04
|
||||
runs-on: ubuntu-latest
|
||||
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
|
||||
@@ -9,7 +9,7 @@
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: repo-check
|
||||
name: "Checks"
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
@@ -28,7 +28,7 @@ on:
|
||||
|
||||
jobs:
|
||||
file-headers-check:
|
||||
runs-on: ubuntu-18.04
|
||||
runs-on: ubuntu-latest
|
||||
if: |
|
||||
(github.event_name == 'push' ||
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
@@ -78,7 +78,7 @@ jobs:
|
||||
exit 1
|
||||
|
||||
code-style:
|
||||
runs-on: ubuntu-18.04
|
||||
runs-on: ubuntu-latest
|
||||
if: |
|
||||
(github.event_name == 'push' ||
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
@@ -88,14 +88,14 @@ jobs:
|
||||
|
||||
- name: get astyle
|
||||
run: |
|
||||
sudo apt-get install astyle=3.1-1ubuntu2
|
||||
sudo apt-get install astyle
|
||||
|
||||
- name: style check
|
||||
run: |
|
||||
./config/githooks/pre-push --style
|
||||
|
||||
documentation:
|
||||
runs-on: ubuntu-18.04
|
||||
runs-on: ubuntu-latest
|
||||
if: |
|
||||
(github.event_name == 'push' ||
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
@@ -106,6 +106,8 @@ jobs:
|
||||
- name: get doxygen and graphviz
|
||||
run: |
|
||||
sudo apt-get install doxygen graphviz
|
||||
cd doc
|
||||
doxygen -u CodeDocumentation.conf.in
|
||||
|
||||
- name: build documentation
|
||||
run: |
|
||||
@@ -118,7 +120,7 @@ jobs:
|
||||
github.ref != 'refs/heads/master' &&
|
||||
(github.event_name == 'push' ||
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
runs-on: ubuntu-18.04
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v2
|
||||
|
||||
@@ -307,6 +307,9 @@ miniapps/solvers/sol.*
|
||||
miniapps/parelag/MultilevelHcurlHdivSolver
|
||||
miniapps/parelag/*.mesh
|
||||
|
||||
miniapps/multidomain/multidomain
|
||||
miniapps/hooke/hooke
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
|
||||
@@ -10,20 +10,27 @@
|
||||
|
||||
Version 4.4.1 (development)
|
||||
===========================
|
||||
- Added example for body-fitted volumetric and shape integration using the
|
||||
Algoim library.
|
||||
|
||||
- Added WhiteGaussianNoiseDomainLFIntegrator: a LinearFormIntegrator class for
|
||||
spatial Gaussian white noise.
|
||||
Meshing improvements
|
||||
--------------------
|
||||
- Added support for mixed meshes and pyramids in GSLIB-FindPoints.
|
||||
|
||||
- Added a new Zienkiewicz-Zhu patch recovery-based a posteriori error estimator.
|
||||
See fem/estimators.hpp.
|
||||
- Added new SubMesh and ParSubMesh classes that can be used to extract a subset
|
||||
of a given Mesh. These classes have the same functionality as Mesh and ParMesh
|
||||
and work with all existing MFEM interfaces like finite element spaces etc.
|
||||
|
||||
- Added support for ParMoonolith, https://bitbucket.org/zulianp/par_moonolith,
|
||||
which provides parallel non-conforming, non-matching, variational, volumetric
|
||||
mesh information transfer. With ParMortarAssember, fields can be exchanged
|
||||
between arbitrarily distributed and unrelated finite element meshes in a
|
||||
variationally consistent way.
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Added support for assembling low-order-refined matrices using a GPU-enabled
|
||||
"batched" algorithm. The lor_solvers and plor_solvers now fully support GPU
|
||||
acceleration with arbitrary user-supplied coefficients.
|
||||
|
||||
- Added support for partial assembly and fully matrix-free operators on mixed
|
||||
meshes (different element types and p-adaptivity) through libCEED, including
|
||||
device acceleration, e.g. with NVIDIA and AMD GPUs. The p-adaptivity is
|
||||
currently limited by MFEM capabilities, i.e. 2D serial meshes. All mixed
|
||||
element topologies are supported in serial and parallel: segment, triangle,
|
||||
square, tetrahedron, cube, prism, and pyramid.
|
||||
|
||||
- Added full assembly and device support for several LinearForm integrators:
|
||||
* DomainLF: (f, v)
|
||||
@@ -31,18 +38,79 @@ Version 4.4.1 (development)
|
||||
* DomainLFGrad: (f, grad(v))
|
||||
* VectorDomainLFGrad: ((f1x,f1y,f1z,...,fnx,fny,fnz), grad(v1,...,vn))
|
||||
|
||||
- Added WhiteGaussianNoiseDomainLFIntegrator: a LinearFormIntegrator class for
|
||||
spatial Gaussian white noise.
|
||||
|
||||
- Added a new Zienkiewicz-Zhu patch recovery-based a posteriori error estimator.
|
||||
See fem/estimators.hpp.
|
||||
|
||||
- Fixes and improvements in LinearFormExtension.
|
||||
|
||||
- Added a new class FaceQuadratureSpace that allows for the construction of
|
||||
QuadratureFunctions on the interior or boundary faces of a mesh.
|
||||
|
||||
- Added a class CoefficientVector for efficient access of variable coefficient
|
||||
values at quadrature points (in particular for GPU/device kernels).
|
||||
|
||||
Linear and nonlinear solvers
|
||||
----------------------------
|
||||
- Added a new class DGMassInverse that performs a local elementwise CG
|
||||
iteration to solve systems involving the discontinuous Galerkin mass matrix,
|
||||
including support for device/GPU acceleration.
|
||||
|
||||
- Added more flexibility to the constraint solver classes:
|
||||
* PenaltyConstrainedSolver now allows for a vector of penalty parameters
|
||||
(necessary for penalty contact)
|
||||
* PenaltyConstrainedSolver and EliminationSolver can use GMRES or PCG
|
||||
* All constraint solver classes can take a user-defined preconditioner
|
||||
|
||||
- Added functions to toggle additional options for the SuperLU_Dist and Hypre
|
||||
preconditioners (ParaSails, Euclid, ILU).
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new elasticity miniapp, Hooke, that showcases a low-level approach of
|
||||
using MFEM to solve a nonlinear elasticity problem based on the fundamental
|
||||
finite element operator decomposition. The miniapp also integrates with
|
||||
automatic differentiation tools like a native dual number implementation or a
|
||||
third party library such as Enzyme. See miniapps/elasticity for more details.
|
||||
|
||||
- Add a new example code, Example 33/33p, to demonstrate the solution of
|
||||
spectral fractional PDEs with MFEM.
|
||||
|
||||
Integrations, testing and documentation
|
||||
---------------------------------------
|
||||
- Added a Dockerfile for a simple MFEM container, see config/docker/README.md.
|
||||
|
||||
- Added support for assembling low-order-refined matrices using a GPU-enabled
|
||||
"batched" algorithm. The lor_solvers and plor_solvers now fully support GPU
|
||||
acceleration.
|
||||
- Added support for ParMoonolith, https://bitbucket.org/zulianp/par_moonolith,
|
||||
which provides parallel non-conforming, non-matching, variational, volumetric
|
||||
mesh information transfer. With ParMortarAssember, fields can be exchanged
|
||||
between arbitrarily distributed and unrelated finite element meshes in a
|
||||
variationally consistent way.
|
||||
|
||||
- Added support for the LLVM-based automatic differentiation tool Enzyme, see
|
||||
https://github.com/EnzymeAD/Enzyme. Build system flags and a convenience
|
||||
header are provided. The functionality and interaction are demonstrated in a
|
||||
new miniapp in miniapps/elasticity.
|
||||
|
||||
- Added example for body-fitted volumetric and shape integration using the
|
||||
Algoim library.
|
||||
|
||||
- Added Windows 2022 CI testing with GitHub actions.
|
||||
|
||||
- Added support for mixed meshes and pyramids in GSLIB-FindPoints.
|
||||
Miscellaneous
|
||||
-------------
|
||||
- Various other simplifications, extensions, and bugfixes in the code.
|
||||
|
||||
- Added boundary elimination with device support for `SparseMatrix` and
|
||||
`HypreParMatrix`.
|
||||
|
||||
- When using `AssemblyLevel::FULL`, `FABilinearFormExtension::FormSystemMatrix`
|
||||
outputs an `OperatorHandle` containing a `SparseMatrix` in serial, and an
|
||||
`HypreParMatrix` in parallel (instead of a `ConstrainedOperator`).
|
||||
|
||||
- Added TMOP metrics for mesh untangling and worst-case quality improvement.
|
||||
|
||||
|
||||
Version 4.4, released on March 21, 2022
|
||||
=======================================
|
||||
@@ -75,6 +143,11 @@ Meshing improvements
|
||||
- Added a simpler interface to access mesh face information, see FaceInformation
|
||||
and GetFaceInformation in the Mesh class.
|
||||
|
||||
- Added the method ParMesh::GetSerialMesh() that reconstructs a partitioned
|
||||
parallel mesh on a given single rank. Also, added the method
|
||||
ParMesh::PrintAsSerial() that saves the reconstructed serial mesh to a C++
|
||||
stream on rank 0.
|
||||
|
||||
- Gmsh meshes where all elements have zero physical tag (the default Gmsh output
|
||||
format if no physical groups are defined) are now successfully loaded, and
|
||||
elements are reassigned attribute number 1.
|
||||
@@ -177,6 +250,13 @@ Miscellaneous
|
||||
|
||||
- Fixed several MinGW build issues on Windows.
|
||||
|
||||
- In various places in the library, replace the use of 'long' with 'long long'
|
||||
to better support Win64 builds where 'long' is 32-bit and 'long long' is
|
||||
64-bit. On Linux and MacOS, both types are typically 64-bit.
|
||||
|
||||
- Update various "MemoryUsage" methods to return 'std::size_t' instead of 'long'
|
||||
since the latter is 32-bit in Win64 builds.
|
||||
|
||||
- Added 'double' atomicAdd implementation for previous versions of CUDA.
|
||||
|
||||
- HypreParVector and Vector now support C++ move semantics, and the copy
|
||||
|
||||
+19
-3
@@ -136,6 +136,8 @@ if (MFEM_USE_CUDA)
|
||||
"CUDA flags set for MFEM" FORCE)
|
||||
set(CUSPARSE_FOUND TRUE)
|
||||
set(CUSPARSE_LIBRARIES "cusparse")
|
||||
set(CUBLAS_FOUND TRUE)
|
||||
set(CUSBLAS_LIBRARIES "cublas")
|
||||
endif()
|
||||
|
||||
if (XSDK_ENABLE_C)
|
||||
@@ -452,6 +454,11 @@ if (MFEM_USE_PARELAG)
|
||||
find_package(PARELAG REQUIRED)
|
||||
endif()
|
||||
|
||||
# Enzyme
|
||||
if (MFEM_USE_ENZYME)
|
||||
find_package(ENZYME REQUIRED)
|
||||
endif()
|
||||
|
||||
# MFEM_TIMER_TYPE
|
||||
if (NOT DEFINED MFEM_TIMER_TYPE)
|
||||
if (APPLE)
|
||||
@@ -470,16 +477,25 @@ if (NOT DEFINED MFEM_TIMER_TYPE)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Without this, CMake 3.21.1 (and 3.20.2) run into CMake Errors like the following:
|
||||
# CMake Error at config/cmake/modules/MfemCmakeUtilities.cmake:60 (add_library):
|
||||
# Target "mfem" links to target "Threads::Threads" but the target was not
|
||||
# found. Perhaps a find_package() call is missing for an IMPORTED target, or
|
||||
# an ALIAS target is missing?
|
||||
# Call Stack (most recent call first):
|
||||
# CMakeLists.txt:474 (mfem_add_library)
|
||||
find_package(Threads REQUIRED)
|
||||
|
||||
# List all possible libraries in order of dependencies.
|
||||
# [METIS < SuiteSparse]:
|
||||
# With newer versions of SuiteSparse which include METIS header using 64-bit
|
||||
# integers, the METIS header (with 32-bit indices, as used by mfem) needs to
|
||||
# be before SuiteSparse.
|
||||
set(MFEM_TPLS OPENMP HYPRE BLAS LAPACK SuperLUDist METIS SuiteSparse SUNDIALS
|
||||
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist METIS SuiteSparse SUNDIALS
|
||||
PETSC SLEPC MESQUITE MUMPS STRUMPACK AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
|
||||
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
|
||||
ADIOS2 CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
|
||||
MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM)
|
||||
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
|
||||
MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
|
||||
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
|
||||
set(TPL_LIBRARIES "")
|
||||
|
||||
+9
-2
@@ -102,7 +102,9 @@ The MFEM source code has the following structure:
|
||||
.
|
||||
├── config
|
||||
│ ├── cmake
|
||||
│ └── githooks
|
||||
│ ├── docker
|
||||
│ ├── githooks
|
||||
│ └── vcpkg
|
||||
├── data
|
||||
├── doc
|
||||
├── examples
|
||||
@@ -111,6 +113,7 @@ The MFEM source code has the following structure:
|
||||
│ ├── ginkgo
|
||||
│ ├── hiop
|
||||
│ ├── jupyter
|
||||
│ ├── moonolith
|
||||
│ ├── petsc
|
||||
│ ├── pumi
|
||||
│ ├── sundials
|
||||
@@ -118,21 +121,25 @@ The MFEM source code has the following structure:
|
||||
├── fem
|
||||
│ ├── ceed
|
||||
│ ├── fe
|
||||
│ ├── qinterp
|
||||
│ ├── lor
|
||||
│ ├── moonolith
|
||||
│ ├── qinterp
|
||||
│ └── tmop
|
||||
├── general
|
||||
├── linalg
|
||||
│ └── simd
|
||||
├── mesh
|
||||
│ └── submesh
|
||||
├── miniapps
|
||||
│ ├── adjoint
|
||||
│ ├── autodiff
|
||||
│ ├── common
|
||||
│ ├── electromagnetics
|
||||
│ ├── gslib
|
||||
│ ├── hooke
|
||||
│ ├── meshing
|
||||
│ ├── mtop
|
||||
│ ├── multidomain
|
||||
│ ├── navier
|
||||
│ ├── nurbs
|
||||
│ ├── parelag
|
||||
|
||||
@@ -16,7 +16,11 @@ requires an MPI C++ compiler, as well as the following external libraries:
|
||||
https://github.com/hypre-space/hypre
|
||||
|
||||
- METIS (a family of multilevel partitioning algorithms)
|
||||
http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
|
||||
https://github.com/mfem/tpls
|
||||
|
||||
Note: We recommend our mirror of metis-4.0.3/5.1.0 above because the METIS
|
||||
webpage, https://glaros.dtc.umn.edu/gkhome/metis/metis/overview, is often down
|
||||
and we don't support yet the new repo https://github.com/KarypisLab/METIS.
|
||||
|
||||
The hypre dependency can be downloaded as a tarball from GitHub or from the
|
||||
project webpage https://www.llnl.gov/casc/hypre. For example, the 2.24.0 release
|
||||
@@ -472,10 +476,10 @@ MFEM_USE_CODIPACK = YES/NO
|
||||
www.scicomp.uni-kl.de/codi/
|
||||
|
||||
MFEM_USE_ALGOIM = YES/NO
|
||||
Enable the usage of Algoim - a collection of high-order accurate numerical
|
||||
methods and C++ algorithms for working with implicitly-defined geometry and
|
||||
level set methods. The Algoim library requires the Blitz++ library. The MFEM
|
||||
provides interface to Algoim v1. Thus, to check out the specific state use:
|
||||
Enable the usage of Algoim - a collection of high-order accurate numerical
|
||||
methods and C++ algorithms for working with implicitly-defined geometry and
|
||||
level set methods. The Algoim library requires the Blitz++ library. The MFEM
|
||||
provides interface to Algoim v1. Thus, to check out the specific state use:
|
||||
git checkout 9c9ca0ef094d8ab0390ed36367a1151b459bbe0a
|
||||
https://algoim.github.io
|
||||
|
||||
@@ -550,7 +554,7 @@ MFEM_USE_FMS = YES/NO
|
||||
Enables support for the FMS library which consists of the DataCollection
|
||||
sub-class mfem::FMSDataCollection for I/O in FMS formats, see the header file
|
||||
fem/fmsdatacollection.hpp. In addition, this option enables in-memory
|
||||
convetion routines between FMS's FmsDataCollection structure and MFEM's
|
||||
conversion routines between FMS's FmsDataCollection structure and MFEM's
|
||||
DataCollection class, see the header file fem/fmsconvert.hpp.
|
||||
|
||||
MFEM_USE_PARELAG = YES/NO
|
||||
@@ -558,6 +562,14 @@ MFEM_USE_PARELAG = YES/NO
|
||||
use ParELAG. In fact, ParELAG is dependent on MFEM. Therefore, this option
|
||||
currently only concerns the miniapps.
|
||||
|
||||
MFEM_USE_ENZYME = YES/NO
|
||||
Enables automatic differentiation support through the LLVM plugin Enzyme.
|
||||
This requires the compiler to be set to clang (>=14.0.0). We also advise to
|
||||
use the link time optimization (LTO) plugin, to enable functions that you
|
||||
define over multiple files (compilation units) and want to be differentiated
|
||||
automatically, to work. This requires to also use LLVM/LLD for linking.
|
||||
Recommended options are in config/defaults.mk.
|
||||
|
||||
MFEM_BUILD_TAG = (any value)
|
||||
An optional tag to characterize the build. Exported to config/config.mk.
|
||||
Can be used to identify the MFEM build from other makefiles.
|
||||
@@ -589,7 +601,7 @@ The specific libraries and their options are:
|
||||
|
||||
- METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
|
||||
MFEM_USE_METIS_5 = YES (default is to use METIS 4).
|
||||
URL: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
|
||||
URL: https://github.com/mfem/tpls (MFEM mirror, see above)
|
||||
Options: METIS_OPT, METIS_LIB.
|
||||
Versions: METIS 4.0.3 or 5.1.0.
|
||||
|
||||
@@ -760,8 +772,6 @@ The specific libraries and their options are:
|
||||
Options: BLITZ_OPT, BLITZ_LIB
|
||||
Versions: BLITZ = 1.0.2
|
||||
|
||||
|
||||
|
||||
- MKL CPardiso (optional), used when MFEM_USE_MKL_CPARDISO = YES.
|
||||
URL: https://software.intel.com/content/www/us/en/develop/tools/math-kernel-library.html
|
||||
Options: MKL_CPARDISO_OPT, MKL_CPARDISO_LIB.
|
||||
@@ -838,6 +848,12 @@ The specific libraries and their options are:
|
||||
URL: https://github.com/LLNL/parelag
|
||||
Options: PARELAG_DIR, PARELAG_OPT, PARELAG_LIB.
|
||||
|
||||
- Enzyme, used when MFEM_USE_ENZYME = YES. Requires LLVM/Clang >= 14.0.0.
|
||||
URL: https://github.com/EnzymeAD/Enzyme
|
||||
Options: ENZYME_DIR, ENZYME_OPT, ENZYME_LIB.
|
||||
Versions: Enzyme >= v0.0.33.
|
||||
|
||||
|
||||
Building with CMake
|
||||
===================
|
||||
The MFEM build system consists of two steps: configuration and compilation.
|
||||
@@ -976,6 +992,7 @@ MFEM_USE_CALIPER
|
||||
MFEM_USE_FMS
|
||||
MFEM_USE_BENCHMARK
|
||||
MFEM_USE_PARELAG
|
||||
MFEM_USE_ENZYME
|
||||
|
||||
The following options are CMake specific:
|
||||
|
||||
@@ -1035,6 +1052,7 @@ The CMake build system adds auto-detection for the following packages/libraries:
|
||||
- FMS
|
||||
- BENCHMARK
|
||||
- ParELAG
|
||||
- Enzyme
|
||||
|
||||
The following built-in CMake packages are also used:
|
||||
|
||||
|
||||
@@ -61,6 +61,7 @@ set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
|
||||
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
|
||||
set(MFEM_USE_BENCHMARK @MFEM_USE_BENCHMARK@)
|
||||
set(MFEM_USE_PARELAG @MFEM_USE_PARELAG@)
|
||||
set(MFEM_USE_ENZYME @MFEM_USE_ENZYME@)
|
||||
|
||||
set(MFEM_CXX_COMPILER "@CMAKE_CXX_COMPILER@")
|
||||
set(MFEM_CXX_FLAGS "@CMAKE_CXX_FLAGS@")
|
||||
|
||||
@@ -190,4 +190,7 @@
|
||||
// Enable MFEM functionality based on the Google Benchmark library.
|
||||
#cmakedefine MFEM_USE_BENCHMARK
|
||||
|
||||
// Enable Enzyme for AD
|
||||
#cmakedefine MFEM_USE_ENZYME
|
||||
|
||||
#endif // MFEM_CONFIG_HEADER
|
||||
|
||||
@@ -0,0 +1,27 @@
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
message(STATUS "Looking for ENZYME ...")
|
||||
message(STATUS " in ENZYME_DIR = ${ENZYME_DIR}")
|
||||
|
||||
# Make sure the directory and version combination works. Do nothing otherwise.
|
||||
if(EXISTS "${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
|
||||
message(STATUS "Found ENZYME: ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
|
||||
|
||||
# Set ENZYME_FOUND
|
||||
set(ENZYME_FOUND TRUE CACHE BOOL "ENZYME was found." FORCE)
|
||||
|
||||
# Set CXX flags to accommodate the Enzyme Clang plugin
|
||||
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Xclang -load -Xclang ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so -mllvm -enzyme-loose-types=1")
|
||||
set(MFEM_USE_ENZYME YES)
|
||||
else()
|
||||
|
||||
endif()
|
||||
@@ -0,0 +1,57 @@
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - HDF5_FOUND - If HDF5 was found
|
||||
# - HDF5_LIBRARIES - The HDF5 libraries
|
||||
# - HDF5_INCLUDE_DIRS - The HDF5 include directories
|
||||
|
||||
# First Check for HDF5_DIR
|
||||
if(NOT HDF5_DIR)
|
||||
MESSAGE(FATAL_ERROR "Could not find HDF5. HDF5 support needs explicit HDF5_DIR")
|
||||
endif()
|
||||
|
||||
# Find includes
|
||||
find_path( HDF5_INCLUDE_DIRS hdf5.h
|
||||
PATHS ${HDF5_DIR}/include/
|
||||
NO_DEFAULT_PATH
|
||||
NO_CMAKE_ENVIRONMENT_PATH
|
||||
NO_CMAKE_PATH
|
||||
NO_SYSTEM_ENVIRONMENT_PATH
|
||||
NO_CMAKE_SYSTEM_PATH)
|
||||
|
||||
find_library( __HDF5_LIBRARY NAMES hdf5 libhdf5 libhdf5_D libhdf5_debug
|
||||
PATHS ${HDF5_DIR}/lib
|
||||
NO_DEFAULT_PATH
|
||||
NO_CMAKE_ENVIRONMENT_PATH
|
||||
NO_CMAKE_PATH
|
||||
NO_SYSTEM_ENVIRONMENT_PATH
|
||||
NO_CMAKE_SYSTEM_PATH)
|
||||
|
||||
find_library( __HDF5_HL_LIBRARY NAMES hdf5_hl libhdf5_hl libhdf5_hl_D libhdf5_hl_debug
|
||||
PATHS ${HDF5_DIR}/lib
|
||||
NO_DEFAULT_PATH
|
||||
NO_CMAKE_ENVIRONMENT_PATH
|
||||
NO_CMAKE_PATH
|
||||
NO_SYSTEM_ENVIRONMENT_PATH
|
||||
NO_CMAKE_SYSTEM_PATH)
|
||||
|
||||
set(HDF5_LIBRARIES ${__HDF5_HL_LIBRARY} ${__HDF5_LIBRARY})
|
||||
|
||||
include(FindPackageHandleStandardArgs)
|
||||
|
||||
# Handle the QUIETLY and REQUIRED arguments and set HDF5_FOUND to TRUE if all
|
||||
# listed variables are TRUE
|
||||
find_package_handle_standard_args(HDF5 DEFAULT_MSG
|
||||
HDF5_INCLUDE_DIRS
|
||||
__HDF5_LIBRARY
|
||||
__HDF5_HL_LIBRARY
|
||||
HDF5_LIBRARIES )
|
||||
@@ -14,6 +14,6 @@
|
||||
# - UMPIRE_LIBRARIES
|
||||
# - UMPIRE_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(UMPIRE UMPIRE UMPIRE_DIR "include" "umpire/Umpire.hpp" "lib" "umpire"
|
||||
"Paths to headers required by UMPIRE." "Libraries required by UMPIRE.")
|
||||
find_package(umpire REQUIRED CONFIG)
|
||||
set(UMPIRE_FOUND ${umpire_FOUND})
|
||||
set(UMPIRE_LIBRARIES "umpire")
|
||||
|
||||
@@ -43,22 +43,14 @@ function(convert_filenames_to_full_paths NAMES)
|
||||
set(${NAMES} ${tmp_names} PARENT_SCOPE)
|
||||
endfunction()
|
||||
|
||||
# Wrapper for add_executable that calls the HIP wrapper if applicable
|
||||
# Wrapper for add_executable
|
||||
macro(mfem_add_executable NAME)
|
||||
if (MFEM_USE_HIP)
|
||||
add_executable(${NAME} ${ARGN})
|
||||
else()
|
||||
add_executable(${NAME} ${ARGN})
|
||||
endif()
|
||||
add_executable(${NAME} ${ARGN})
|
||||
endmacro()
|
||||
|
||||
# Wrapper for add_library that calls the HIP wrapper if applicable
|
||||
# Wrapper for add_library
|
||||
macro(mfem_add_library NAME)
|
||||
if (MFEM_USE_HIP)
|
||||
add_library(${NAME} ${ARGN})
|
||||
else()
|
||||
add_library(${NAME} ${ARGN})
|
||||
endif()
|
||||
add_library(${NAME} ${ARGN})
|
||||
endmacro()
|
||||
|
||||
# Simple shortcut to add_custom_target() with option to add the target to the
|
||||
@@ -894,7 +886,7 @@ function(mfem_export_mk_files)
|
||||
MFEM_USE_HIP MFEM_USE_RAJA MFEM_USE_OCCA MFEM_USE_CEED MFEM_USE_CALIPER
|
||||
MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2 MFEM_USE_MKL_CPARDISO
|
||||
MFEM_USE_ADFORWARD MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG
|
||||
MFEM_USE_MOONOLITH MFEM_USE_ALGOIM)
|
||||
MFEM_USE_MOONOLITH MFEM_USE_ALGOIM MFEM_USE_ENZYME)
|
||||
foreach(var ${CONFIG_MK_BOOL_VARS})
|
||||
if (${var})
|
||||
set(${var} YES)
|
||||
|
||||
@@ -31,9 +31,11 @@
|
||||
|
||||
// Windows specific options
|
||||
#ifdef _WIN32
|
||||
#ifndef _USE_MATH_DEFINES
|
||||
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
|
||||
#define _USE_MATH_DEFINES
|
||||
#endif
|
||||
#endif
|
||||
// On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
|
||||
// the following macro allows us to get M_PI and some needed functions, e.g.
|
||||
// posix_memalign(), strdup(), strerror_r().
|
||||
|
||||
@@ -195,4 +195,7 @@
|
||||
// Enable functionality based on the Google Benchmark library.
|
||||
// #define MFEM_USE_BENCHMARK
|
||||
|
||||
// Enable the Enzyme LLVM plugin
|
||||
// #define MFEM_USE_ENZYME
|
||||
|
||||
#endif // MFEM_CONFIG_HEADER
|
||||
|
||||
@@ -63,6 +63,7 @@ MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
|
||||
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
|
||||
MFEM_USE_BENCHMARK = @MFEM_USE_BENCHMARK@
|
||||
MFEM_USE_PARELAG = @MFEM_USE_PARELAG@
|
||||
MFEM_USE_ENZYME = @MFEM_USE_ENZYME@
|
||||
|
||||
# Compiler, compile options, and link options
|
||||
MFEM_CXX = @MFEM_CXX@
|
||||
|
||||
@@ -64,6 +64,7 @@ option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
|
||||
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
|
||||
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
|
||||
option(MFEM_USE_PARELAG "Enable ParELAG" OFF)
|
||||
option(MFEM_USE_ENZYME "Enable Enzyme" OFF)
|
||||
|
||||
# Optional overrides for autodetected MPIEXEC and MPIEXEC_NUMPROC_FLAG
|
||||
# set(MFEM_MPIEXEC "mpirun" CACHE STRING "Command for running MPI tests")
|
||||
|
||||
+23
-3
@@ -42,6 +42,9 @@ STATIC = YES
|
||||
SHARED = NO
|
||||
|
||||
# CUDA configuration options
|
||||
#
|
||||
# If you set MFEM_USE_ENZYME=YES, CUDA_CXX has to be configured to use cuda with
|
||||
# clang as its host compiler.
|
||||
CUDA_CXX = nvcc
|
||||
CUDA_ARCH = sm_60
|
||||
CUDA_FLAGS = -x=cu --expt-extended-lambda -arch=$(CUDA_ARCH)
|
||||
@@ -163,6 +166,7 @@ MFEM_USE_ADFORWARD = NO
|
||||
MFEM_USE_CODIPACK = NO
|
||||
MFEM_USE_BENCHMARK = NO
|
||||
MFEM_USE_PARELAG = NO
|
||||
MFEM_USE_ENZYME = NO
|
||||
|
||||
# MPI library compile and link flags
|
||||
# These settings are used only when building MFEM with MPI + HIP
|
||||
@@ -175,7 +179,7 @@ ifeq ($(MFEM_USE_MPI)$(MFEM_USE_HIP),YESYES)
|
||||
endif
|
||||
|
||||
# ROCM/HIP directory such that ROCM/HIP libraries like rocsparse and rocrand are
|
||||
# found in $(HIP_DIR)/lib, usually as links. Typically, this directoory is of
|
||||
# found in $(HIP_DIR)/lib, usually as links. Typically, this directory is of
|
||||
# the form /opt/rocm-X.Y.Z which is called ROCM_PATH by hipconfig.
|
||||
ifeq ($(MFEM_USE_HIP),YES)
|
||||
HIP_DIR := $(patsubst %/,%,$(dir $(shell which $(HIP_CXX))))
|
||||
@@ -203,7 +207,7 @@ HYPRE_OPT = -I$(HYPRE_DIR)/include
|
||||
HYPRE_LIB = -L$(HYPRE_DIR)/lib -lHYPRE
|
||||
ifeq (YES,$(MFEM_USE_CUDA))
|
||||
# This is only necessary when hypre is built with cuda:
|
||||
HYPRE_LIB += -lcusparse -lcurand
|
||||
HYPRE_LIB += -lcusparse -lcurand -lcublas
|
||||
endif
|
||||
ifeq (YES,$(MFEM_USE_HIP))
|
||||
# This is only necessary when hypre is built with hip:
|
||||
@@ -305,7 +309,7 @@ SCALAPACK_LIB = -L$(SCALAPACK_DIR)/lib -lscalapack $(LAPACK_LIB)
|
||||
MPI_FORTRAN_LIB = -lmpifort
|
||||
# OpenMPI:
|
||||
# MPI_FORTRAN_LIB = -lmpi_mpifh
|
||||
# Additional Fortan library:
|
||||
# Additional Fortran library:
|
||||
# MPI_FORTRAN_LIB += -lgfortran
|
||||
|
||||
# MUMPS library configuration
|
||||
@@ -520,6 +524,22 @@ PARELAG_DIR = @MFEM_DIR@/../parelag
|
||||
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
|
||||
PARELAG_LIB = -L$(PARELAG_DIR)/build/src -lParELAG
|
||||
|
||||
# Enzyme configuration
|
||||
|
||||
# If you want to enable automatic differentiation at compile time, use the
|
||||
# options below, adapted to your configuration. To be more flexible, we
|
||||
# recommend using the Enzyme plugin during link time optimization. One option is
|
||||
# to add your options to the global compiler/linker flags like
|
||||
#
|
||||
# BASE_FLAGS += -flto
|
||||
# CXX_XLINKER += -fuse-ld=lld -Wl,--lto-legacy-pass-manager\
|
||||
# -Wl,-mllvm=-load=$(ENZYME_DIR)/LLDEnzyme-$(ENZYME_VERSION).so -Wl,
|
||||
#
|
||||
ENZYME_DIR ?= @MFEM_DIR@/../enzyme
|
||||
ENZYME_VERSION ?= 14
|
||||
ENZYME_OPT = -fno-experimental-new-pass-manager -Xclang -load -Xclang $(ENZYME_DIR)/ClangEnzyme-$(ENZYME_VERSION).so
|
||||
ENZYME_LIB = ""
|
||||
|
||||
# If YES, enable some informational messages
|
||||
VERBOSE = NO
|
||||
|
||||
|
||||
+19
-22
@@ -1,30 +1,27 @@
|
||||
FROM ghcr.io/rse-ops/cuda-ubuntu-20.04:cuda-11.0.3
|
||||
FROM ghcr.io/mfem/mfem-ubuntu-base:latest as builder
|
||||
|
||||
# docker build -t ghcr.io/mfem/mfem-ubuntu-base .
|
||||
# docker build -t ghcr.io/mfem/mfem-ubuntu .
|
||||
|
||||
COPY ./config/docker/spack.yaml /opt/mfem-env/spack.yaml
|
||||
RUN apt-get install -y python3 && \
|
||||
cd /opt/mfem-env && \
|
||||
. /opt/spack/share/spack/setup-env.sh && \
|
||||
spack env activate . && \
|
||||
spack env view regenerate
|
||||
|
||||
FROM ubuntu:22.04
|
||||
|
||||
COPY --from=builder /opt/view /opt/view
|
||||
COPY --from=builder /opt/mfem-view /opt/mfem-view
|
||||
|
||||
RUN apt-get update && \
|
||||
apt-get install -y unzip gfortran && \
|
||||
spack compiler find && \
|
||||
apt-get install -y libcurl4-openssl-dev libssl-dev
|
||||
|
||||
# /code is the working directory for code
|
||||
WORKDIR /code
|
||||
COPY . /code
|
||||
|
||||
# This is for a spack environment/view to install from there
|
||||
WORKDIR /opt/mfem-env
|
||||
RUN . /opt/spack/share/spack/setup-env.sh && \
|
||||
spack env create -d . && \
|
||||
echo " concretization: together" >> spack.yaml && \
|
||||
spack env activate . && \
|
||||
spack develop --path /code mfem@master+examples+miniapps && \
|
||||
spack add mfem@master+examples+miniapps && \
|
||||
spack install
|
||||
|
||||
# ensure mfem always on various paths
|
||||
RUN cd /opt/mfem-env && \
|
||||
spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
|
||||
ENV PATH=$PATH:/opt/mfem-view/bin
|
||||
ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mfem-view/lib:/opt/mfem-view/lib64
|
||||
ENV DEBIAN_FRONTEND=noninteractive
|
||||
|
||||
# The user will see the view on shell into the container
|
||||
WORKDIR /opt/mfem-env/.spack-env/view/
|
||||
ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
|
||||
WORKDIR /opt/mfem-view
|
||||
ENTRYPOINT ["/bin/bash"]
|
||||
|
||||
@@ -0,0 +1,47 @@
|
||||
FROM ghcr.io/rse-ops/cuda-ubuntu-20.04:cuda-11.0.3
|
||||
|
||||
# docker build -f Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
|
||||
|
||||
RUN apt-get update && \
|
||||
apt-get install -y unzip gfortran && \
|
||||
spack compiler find && \
|
||||
apt-get install -y libcurl4-openssl-dev libssl-dev
|
||||
|
||||
# /code is the working directory for code
|
||||
WORKDIR /code
|
||||
COPY . /code
|
||||
|
||||
# This is for a spack environment/view to install from there
|
||||
RUN mkdir -p /opt/mfem-env \
|
||||
&& (echo "spack:" \
|
||||
&& echo " view:" \
|
||||
&& echo " mfem:" \
|
||||
&& echo " root: /opt/mfem-view" \
|
||||
&& echo " link_type: copy" \
|
||||
&& echo " packages:" \
|
||||
&& echo " all:" \
|
||||
&& echo " target:" \
|
||||
&& echo " - x86_64_v3" \
|
||||
&& echo " config:" \
|
||||
&& echo " concretizer: clingo" \
|
||||
&& echo " compiler:" \
|
||||
&& echo " target:" \
|
||||
&& echo " - x86_64_v3" \
|
||||
&& echo " install_missing_compilers: true" \
|
||||
&& echo " concretization: together") > /opt/mfem-env/spack.yaml
|
||||
|
||||
RUN cd /opt/mfem-env && \
|
||||
. /opt/spack/share/spack/setup-env.sh && \
|
||||
spack env activate . && \
|
||||
spack develop --path /code mfem@master+examples+miniapps && \
|
||||
spack add mfem@master+examples+miniapps # && \
|
||||
# spack install
|
||||
|
||||
# ensure mfem always on various paths
|
||||
#RUN cd /opt/mfem-env && \
|
||||
# spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
|
||||
|
||||
# Present the software install when we shell in
|
||||
# The view is at /opt/mfem-env/.spack-env/view
|
||||
#WORKDIR /opt/software
|
||||
#ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
|
||||
+24
-7
@@ -1,7 +1,8 @@
|
||||
# mfem Docker
|
||||
|
||||
We provide a [Dockerfile](Dockerfile) to build an ubuntu base image. You can use
|
||||
this image for a demo of using mfem! 🎉️
|
||||
We provide a [Dockerfile.base](Dockerfile.base) to build an ubuntu base image,
|
||||
and a [Dockerfile](Dockerfile) to build a smaller one with a multi-stage build.
|
||||
You can use this image for a demo of using mfem! 🎉️
|
||||
|
||||
Updated containers are built and deployed on merges to the main branch and releases.
|
||||
If you want to request a build on demand, you can [manually run the workflow](https://docs.github.com/en/actions/managing-workflow-runs/manually-running-a-workflow) thanks to the workflow dispatch event.
|
||||
@@ -14,18 +15,33 @@ is the [GitHub packages](https://github.com/features/packages) registry that sup
|
||||
Docker images and other OCI artifacts. From the root of the repository:
|
||||
|
||||
```bash
|
||||
$ docker build -f config/docker/Dockerfile -t ghcr.io/mfem/mfem-ubuntu-base .
|
||||
$ docker build -f config/docker/Dockerfile -t ghcr.io/mfem/mfem-ubuntu .
|
||||
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
|
||||
```
|
||||
|
||||
or this directory:
|
||||
### Shell Ubuntu
|
||||
|
||||
To shell into the container:
|
||||
|
||||
```bash
|
||||
$ docker build -f Dockerfile -t ghcr.io/mfem/mfem-ubuntu-base ../../
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu
|
||||
```
|
||||
|
||||
### Shell
|
||||
This smaller image has a view where everything is installed.
|
||||
|
||||
To shell into a container (here is an example with ubuntu):
|
||||
```bash
|
||||
$ ls
|
||||
bin etc include lib libexec sbin share var
|
||||
```
|
||||
|
||||
- Examples are in share/mfem/examples
|
||||
- Examples are in share/mfem/miniapps
|
||||
|
||||
You can read more about interaction with these examples and miniapps below.
|
||||
|
||||
### Shell Ubuntu Base
|
||||
|
||||
To shell into the container:
|
||||
|
||||
```bash
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
|
||||
@@ -128,3 +144,4 @@ $ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/src bash
|
||||
In the above, we can pretend your project is in the present working directory (PWD) and we are
|
||||
binding to source. You can then use the mfem in the container for development, and if you
|
||||
want to distribute your library or app in a container, you can use the mfem container as the base.
|
||||
|
||||
|
||||
@@ -0,0 +1,11 @@
|
||||
spack:
|
||||
specs: [mfem@master+examples+miniapps]
|
||||
view:
|
||||
mfem:
|
||||
root: /opt/mfem-view
|
||||
link_type: copy
|
||||
concretization: together
|
||||
develop:
|
||||
mfem:
|
||||
path: /code
|
||||
spec: mfem@master+examples+miniapps
|
||||
@@ -0,0 +1,8 @@
|
||||
--- a/CMakeLists.txt Wed Dec 21 18:24:22 2016
|
||||
+++ b/CMakeLists.txt Wed Dec 21 18:24:26 2016
|
||||
@@ -20,4 +20,4 @@
|
||||
# Recursively look for CMakeLists.txt in subdirs.
|
||||
add_subdirectory("include")
|
||||
add_subdirectory("libmetis")
|
||||
-add_subdirectory("programs")
|
||||
+# add_subdirectory("programs")
|
||||
@@ -0,0 +1,15 @@
|
||||
--- a/CMakeLists.txt Sat Mar 30 17:24:45 2013
|
||||
+++ b/CMakeLists.txt Wed Dec 21 18:23:43 2016
|
||||
@@ -4,11 +4,7 @@
|
||||
set(GKLIB_PATH "GKlib" CACHE PATH "path to GKlib")
|
||||
set(SHARED FALSE CACHE BOOL "build a shared library")
|
||||
|
||||
-if(MSVC)
|
||||
- set(METIS_INSTALL FALSE)
|
||||
-else()
|
||||
- set(METIS_INSTALL TRUE)
|
||||
-endif()
|
||||
+set(METIS_INSTALL TRUE)
|
||||
|
||||
# Configure libmetis library.
|
||||
if(SHARED)
|
||||
@@ -0,0 +1,34 @@
|
||||
diff --git a/include/metis.h b/include/metis.h
|
||||
index dc5406a..7732437 100644
|
||||
--- a/include/metis.h
|
||||
+++ b/include/metis.h
|
||||
@@ -72,10 +72,14 @@ typedef __int64 int64_t;
|
||||
#define PRId64 "I64d"
|
||||
#define SCNd32 "ld"
|
||||
#define SCNd64 "I64d"
|
||||
+#ifdef _WIN32
|
||||
+#include <stdint.h>
|
||||
+#else
|
||||
#define INT32_MIN ((int32_t)_I32_MIN)
|
||||
#define INT32_MAX _I32_MAX
|
||||
#define INT64_MIN ((int64_t)_I64_MIN)
|
||||
#define INT64_MAX _I64_MAX
|
||||
+#endif
|
||||
#else
|
||||
#include <inttypes.h>
|
||||
#endif
|
||||
diff --git a/GKlib/gk_arch.h b/GKlib/gk_arch.h
|
||||
index 78b1431..7258763 100644
|
||||
--- a/GKlib/gk_arch.h
|
||||
+++ b/GKlib/gk_arch.h
|
||||
@@ -32,8 +32,8 @@
|
||||
|
||||
|
||||
#ifdef __MSC__
|
||||
- #include "ms_stdint.h"
|
||||
- #include "ms_inttypes.h"
|
||||
+ #include <stdint.h>
|
||||
+ #include <inttypes.h>
|
||||
#include "ms_stat.h"
|
||||
#else
|
||||
#ifndef SUNOS
|
||||
@@ -0,0 +1,11 @@
|
||||
--- a/GKlib/gk_arch.h Wed Dec 21 18:34:18 2016
|
||||
+++ b/GKlib/gk_arch.h Wed Dec 21 18:30:49 2016
|
||||
@@ -58,7 +58,7 @@
|
||||
#define PTRDIFF_MAX INT64_MAX
|
||||
#endif
|
||||
|
||||
-#ifdef __MSC__
|
||||
+#if defined(__MSC__) && (_MSC_VER < 1900)
|
||||
/* MSC does not have rint() function */
|
||||
#define rint(x) ((int)((x)+0.5))
|
||||
|
||||
@@ -0,0 +1,14 @@
|
||||
diff --git a/CMakeLists.txt b/CMakeLists.txt
|
||||
index e94f050..b9613a7 100644
|
||||
--- a/CMakeLists.txt
|
||||
+++ b/CMakeLists.txt
|
||||
@@ -1,7 +1,8 @@
|
||||
cmake_minimum_required(VERSION 2.8)
|
||||
project(METIS)
|
||||
|
||||
-set(GKLIB_PATH "GKlib" CACHE PATH "path to GKlib")
|
||||
+set(GKLIB_PATH "${CMAKE_SOURCE_DIR}/GKlib" CACHE PATH "path to GKlib")
|
||||
+
|
||||
set(SHARED FALSE CACHE BOOL "build a shared library")
|
||||
|
||||
set(METIS_INSTALL TRUE)
|
||||
@@ -0,0 +1,11 @@
|
||||
--- a/libmetis/metislib.h Sat Mar 30 17:24:45 2013
|
||||
+++ b/libmetis/metislib.h Wed Dec 21 18:30:59 2016
|
||||
@@ -31,7 +31,7 @@
|
||||
#include <proto.h>
|
||||
|
||||
|
||||
-#if defined(COMPILER_MSC)
|
||||
+#if defined(COMPILER_MSC) && (_MSC_VER < 1900)
|
||||
#if defined(rint)
|
||||
#undef rint
|
||||
#endif
|
||||
@@ -0,0 +1,10 @@
|
||||
--- a/libmetis/CMakeLists.txt Sat Mar 30 17:24:45 2013
|
||||
+++ b/libmetis/CMakeLists.txt Wed Dec 21 17:41:37 2016
|
||||
@@ -11,6 +11,6 @@
|
||||
if(METIS_INSTALL)
|
||||
install(TARGETS metis
|
||||
LIBRARY DESTINATION lib
|
||||
- RUNTIME DESTINATION lib
|
||||
+ RUNTIME DESTINATION bin
|
||||
ARCHIVE DESTINATION lib)
|
||||
endif()
|
||||
@@ -0,0 +1,44 @@
|
||||
diff --git a/CMakeLists.txt b/CMakeLists.txt
|
||||
index b9613a7..e43ffee 100644
|
||||
--- a/CMakeLists.txt
|
||||
+++ b/CMakeLists.txt
|
||||
@@ -22,3 +22,23 @@ include_directories(include)
|
||||
add_subdirectory("include")
|
||||
add_subdirectory("libmetis")
|
||||
# add_subdirectory("programs")
|
||||
+
|
||||
+if(METIS_INSTALL)
|
||||
+ set(PRJ_NAME metis)
|
||||
+ set(PRJ_VER 5.1.0)
|
||||
+ install(EXPORT metisTargets
|
||||
+ FILE ${PRJ_NAME}Targets.cmake
|
||||
+ DESTINATION lib/cmake/${PRJ_NAME})
|
||||
+ include(CMakePackageConfigHelpers)
|
||||
+ write_basic_package_version_file(
|
||||
+ ${CMAKE_CURRENT_BINARY_DIR}/${PRJ_NAME}ConfigVersion.cmake
|
||||
+ VERSION ${PRJ_VER}
|
||||
+ COMPATIBILITY SameMajorVersion)
|
||||
+ file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/${PRJ_NAME}Config.cmake
|
||||
+ "include(\${CMAKE_CURRENT_LIST_DIR}/${PRJ_NAME}Targets.cmake)")
|
||||
+ install(FILES
|
||||
+ ${CMAKE_CURRENT_BINARY_DIR}/${PRJ_NAME}ConfigVersion.cmake
|
||||
+ ${CMAKE_CURRENT_BINARY_DIR}/${PRJ_NAME}Config.cmake
|
||||
+ DESTINATION lib/cmake/${PRJ_NAME})
|
||||
+endif()
|
||||
+
|
||||
diff --git a/libmetis/CMakeLists.txt b/libmetis/CMakeLists.txt
|
||||
index 7a5fc74..5a68cf0 100644
|
||||
--- a/libmetis/CMakeLists.txt
|
||||
+++ b/libmetis/CMakeLists.txt
|
||||
@@ -9,8 +9,9 @@ if(UNIX)
|
||||
endif()
|
||||
|
||||
if(METIS_INSTALL)
|
||||
- install(TARGETS metis
|
||||
+ install(TARGETS metis EXPORT metisTargets
|
||||
LIBRARY DESTINATION lib
|
||||
RUNTIME DESTINATION bin
|
||||
- ARCHIVE DESTINATION lib)
|
||||
+ ARCHIVE DESTINATION lib
|
||||
+ INCLUDES DESTINATION include)
|
||||
endif()
|
||||
@@ -0,0 +1,41 @@
|
||||
vcpkg_check_linkage(ONLY_STATIC_LIBRARY)
|
||||
set(OPTIONS -DSHARED=OFF)
|
||||
|
||||
set(METIS_VERSION 5.1.0)
|
||||
|
||||
vcpkg_download_distfile(ARCHIVE
|
||||
URLS "https://github.com/mfem/tpls/raw/gh-pages/metis-${METIS_VERSION}.tar.gz"
|
||||
FILENAME "metis-${METIS_VERSION}.tar.gz"
|
||||
SHA512 deea47749d13bd06fbeaf98a53c6c0b61603ddc17a43dae81d72c8015576f6495fd83c11b0ef68d024879ed5415c14ebdbd87ce49c181bdac680573bea8bdb25
|
||||
)
|
||||
|
||||
vcpkg_extract_source_archive_ex(
|
||||
OUT_SOURCE_PATH SOURCE_PATH
|
||||
ARCHIVE ${ARCHIVE}
|
||||
REF ${METIS_VERSION}
|
||||
PATCHES
|
||||
enable-install.patch
|
||||
disable-programs.patch
|
||||
fix-runtime-install-destination.patch
|
||||
fix-metis-vs14-math.patch
|
||||
fix-gklib-vs14-math.patch
|
||||
fix-linux-build-error.patch
|
||||
install-metisConfig.patch
|
||||
fix-INT_MIN_define.patch
|
||||
)
|
||||
|
||||
vcpkg_configure_cmake(
|
||||
SOURCE_PATH ${SOURCE_PATH}
|
||||
PREFER_NINJA
|
||||
OPTIONS ${OPTIONS}
|
||||
)
|
||||
|
||||
vcpkg_install_cmake()
|
||||
vcpkg_copy_pdbs()
|
||||
vcpkg_fixup_cmake_targets(CONFIG_PATH lib/cmake/metis)
|
||||
|
||||
file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/include)
|
||||
|
||||
# Handle copyright
|
||||
file(COPY ${SOURCE_PATH}/LICENSE.txt DESTINATION ${CURRENT_PACKAGES_DIR}/share/metis)
|
||||
file(INSTALL ${SOURCE_PATH}/LICENSE.txt DESTINATION ${CURRENT_PACKAGES_DIR}/share/${PORT} RENAME copyright)
|
||||
@@ -0,0 +1,7 @@
|
||||
{
|
||||
"name": "metis-mfem",
|
||||
"version-string": "5.1.0",
|
||||
"port-version": 0,
|
||||
"description": "Serial Graph Partitioning and Fill-reducing Matrix Ordering",
|
||||
"homepage": "https://glaros.dtc.umn.edu/gkhome/metis/metis/overview"
|
||||
}
|
||||
@@ -1,7 +1,7 @@
|
||||
MFEM mesh v1.0
|
||||
|
||||
#
|
||||
# MFEM Geomety Types (see mesh/geom.hpp):
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
|
||||
@@ -2349,7 +2349,7 @@ PLANTUML_INCLUDE_PATH =
|
||||
# Minimum value: 0, maximum value: 10000, default value: 50.
|
||||
# This tag requires that the tag HAVE_DOT is set to YES.
|
||||
|
||||
DOT_GRAPH_MAX_NODES = 50
|
||||
DOT_GRAPH_MAX_NODES = 100
|
||||
|
||||
# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the graphs
|
||||
# generated by dot. A depth value of 3 means that only nodes reachable from the
|
||||
|
||||
@@ -30,6 +30,7 @@
|
||||
//
|
||||
// Device sample runs:
|
||||
// ex1 -pa -d cuda
|
||||
// * ex1 -fa -d cuda
|
||||
// ex1 -pa -d raja-cuda
|
||||
// * ex1 -pa -d raja-hip
|
||||
// ex1 -pa -d occa-cuda
|
||||
@@ -37,9 +38,13 @@
|
||||
// ex1 -pa -d occa-omp
|
||||
// ex1 -pa -d ceed-cpu
|
||||
// ex1 -pa -d ceed-cpu -o 4 -a
|
||||
// ex1 -pa -d ceed-cpu -m ../data/square-mixed.mesh
|
||||
// ex1 -pa -d ceed-cpu -m ../data/fichera-mixed.mesh
|
||||
// * ex1 -pa -d ceed-cuda
|
||||
// * ex1 -pa -d ceed-hip
|
||||
// ex1 -pa -d ceed-cuda:/gpu/cuda/shared
|
||||
// ex1 -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/square-mixed.mesh
|
||||
// ex1 -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/fichera-mixed.mesh
|
||||
// ex1 -m ../data/beam-hex.mesh -pa -d cuda
|
||||
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cpu
|
||||
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cuda:/gpu/cuda/ref
|
||||
@@ -73,6 +78,7 @@ int main(int argc, char *argv[])
|
||||
int order = 1;
|
||||
bool static_cond = false;
|
||||
bool pa = false;
|
||||
bool fa = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = true;
|
||||
bool algebraic_ceed = false;
|
||||
@@ -87,6 +93,8 @@ int main(int argc, char *argv[])
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&fa, "-fa", "--full-assembly", "-no-fa",
|
||||
"--no-full-assembly", "Enable Full Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
#ifdef MFEM_USE_CEED
|
||||
@@ -184,6 +192,7 @@ int main(int argc, char *argv[])
|
||||
// domain integrator.
|
||||
BilinearForm a(&fespace);
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
if (fa) { a.SetAssemblyLevel(AssemblyLevel::FULL); }
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
|
||||
// 10. Assemble the bilinear form and the corresponding linear system,
|
||||
|
||||
@@ -30,13 +30,18 @@
|
||||
//
|
||||
// Device sample runs:
|
||||
// mpirun -np 4 ex1p -pa -d cuda
|
||||
// * mpirun -np 4 ex1p -fa -d cuda
|
||||
// mpirun -np 4 ex1p -pa -d occa-cuda
|
||||
// mpirun -np 4 ex1p -pa -d raja-omp
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cpu
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cpu -o 4 -a
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cpu -m ../data/square-mixed.mesh
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cpu -m ../data/fichera-mixed.mesh
|
||||
// * mpirun -np 4 ex1p -pa -d ceed-cuda
|
||||
// * mpirun -np 4 ex1p -pa -d ceed-hip
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/square-mixed.mesh
|
||||
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/fichera-mixed.mesh
|
||||
// mpirun -np 4 ex1p -m ../data/beam-tet.mesh -pa -d ceed-cpu
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define a
|
||||
@@ -74,6 +79,7 @@ int main(int argc, char *argv[])
|
||||
int order = 1;
|
||||
bool static_cond = false;
|
||||
bool pa = false;
|
||||
bool fa = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = true;
|
||||
bool algebraic_ceed = false;
|
||||
@@ -88,6 +94,8 @@ int main(int argc, char *argv[])
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&fa, "-fa", "--full-assembly", "-no-fa",
|
||||
"--no-full-assembly", "Enable Full Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
#ifdef MFEM_USE_CEED
|
||||
@@ -211,6 +219,7 @@ int main(int argc, char *argv[])
|
||||
// Diffusion domain integrator.
|
||||
ParBilinearForm a(&fespace);
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
if (fa) { a.SetAssemblyLevel(AssemblyLevel::FULL); }
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
|
||||
// 12. Assemble the parallel bilinear form and the corresponding linear
|
||||
|
||||
+1
-1
@@ -182,7 +182,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
for (int level = 0; level < order_refinements; ++level)
|
||||
{
|
||||
collections.Append(new H1_FECollection(std::pow(2, level+1), dim));
|
||||
collections.Append(new H1_FECollection((int)std::pow(2, level+1), dim));
|
||||
fespaces.AddOrderRefinedLevel(collections.Last());
|
||||
}
|
||||
|
||||
|
||||
+1
-1
@@ -219,7 +219,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
for (int level = 0; level < order_refinements; ++level)
|
||||
{
|
||||
collections.Append(new H1_FECollection(std::pow(2, level+1), dim));
|
||||
collections.Append(new H1_FECollection((int)std::pow(2, level+1), dim));
|
||||
fespaces->AddOrderRefinedLevel(collections.Last());
|
||||
}
|
||||
|
||||
|
||||
+1
-1
@@ -195,7 +195,7 @@ int main(int argc, char *argv[])
|
||||
Array<int> ess_tdof_list(0);
|
||||
if (h1 && pmesh.bdr_attributes.Size())
|
||||
{
|
||||
// For a continuous basis the linear system must be modifed to enforce an
|
||||
// For a continuous basis the linear system must be modified to enforce an
|
||||
// essential (Dirichlet) boundary condition. In the DG case this is not
|
||||
// necessary as the boundary condition will only be enforced weakly.
|
||||
fespace.GetEssentialTrueDofs(dbc_bdr, ess_tdof_list);
|
||||
|
||||
+280
-68
@@ -3,34 +3,63 @@
|
||||
// Compile with: make ex33
|
||||
//
|
||||
// Sample runs: ex33 -m ../data/square-disc.mesh -alpha 0.33 -o 2
|
||||
// ex33 -m ../data/square-disc.mesh -alpha 4.5 -o 3
|
||||
// ex33 -m ../data/star.mesh -alpha 1.4 -o 3
|
||||
// ex33 -m ../data/star.mesh -alpha 0.99 -o 3
|
||||
// ex33 -m ../data/inline-quad.mesh -alpha 0.5 -o 3
|
||||
// ex33 -m ../data/amr-quad.mesh -alpha 1.5 -o 3
|
||||
// ex33 -m ../data/disc-nurbs.mesh -alpha 0.33 -o 3
|
||||
// ex33 -m ../data/disc-nurbs.mesh -alpha 2.4 -o 3 -r 4
|
||||
// ex33 -m ../data/l-shape.mesh -alpha 0.33 -o 3 -r 4
|
||||
// ex33 -m ../data/l-shape.mesh -alpha 1.7 -o 3 -r 5
|
||||
//
|
||||
// Verification runs:
|
||||
// ex33 -m ../data/inline-segment.mesh -ver -alpha 1.7 -o 2 -r 2
|
||||
// ex33 -m ../data/inline-quad.mesh -ver -alpha 1.2 -o 2 -r 2
|
||||
// ex33 -m ../data/amr-quad.mesh -ver -alpha 2.6 -o 2 -r 2
|
||||
// ex33 -m ../data/inline-hex.mesh -ver -alpha 0.3 -o 2 -r 1
|
||||
//
|
||||
// Note: the analytic solution to this problem is u = ∏_{i=0}^{dim-1} sin(π x_i)
|
||||
// for all alpha.
|
||||
//
|
||||
// Description:
|
||||
//
|
||||
// In this example we solve the following fractional PDE with MFEM:
|
||||
//
|
||||
// ( - Δ )^α u = f in Ω, u = 0 on ∂Ω, 0 < α < 1,
|
||||
// ( - Δ )^α u = f in Ω, u = 0 on ∂Ω, 0 < α,
|
||||
//
|
||||
// To solve this FPDE, we rely on a rational approximation [2] of the normal
|
||||
// linear operator A^{-α}, where A = - Δ (with associated homogeneous
|
||||
// boundary conditions). Namely, we first approximate the operator
|
||||
// To solve this FPDE, we apply the operator ( - Δ )^(-N), where the integer
|
||||
// N is given by floor(α). By doing so, we obtain
|
||||
//
|
||||
// A^{-α} ≈ Σ_{i=0}^N c_i (A + d_i I)^{-1}, d_0 = 0, d_i > 0,
|
||||
// ( - Δ )^(α-N) u = ( - Δ )^(-N) f in Ω, u = 0 on ∂Ω, 0 < α.
|
||||
//
|
||||
// We first compute the right hand side by solving the integer order PDE
|
||||
//
|
||||
// ( - Δ )^N g = f in Ω, g = ( - Δ )^k g = 0 on ∂Ω, k = 1,..,N-1
|
||||
//
|
||||
// The remaining FPDE is then given by
|
||||
//
|
||||
// ( - Δ )^(α-N) u = g in Ω, u = 0 on ∂Ω.
|
||||
//
|
||||
// We rely on a rational approximation [2] of the normal linear operator
|
||||
// A^{-α + N}, where A = - Δ (with associated homogeneous boundary conditions)
|
||||
// and (a-N) in (0,1). We approximate the operator
|
||||
//
|
||||
// A^{-α+N} ≈ Σ_{i=0}^M c_i (A + d_i I)^{-1}, d_0 = 0, d_i > 0,
|
||||
//
|
||||
// where I is the L2-identity operator and the coefficients c_i and d_i
|
||||
// are generated offline to a prescribed accuracy in a pre-processing step.
|
||||
// We use the triple-A algorithm [1] to generate the rational approximation
|
||||
// that this partial fractional expansion derives from. We then solve N+1
|
||||
// that this partial fractional expansion derives from. We then solve M+1
|
||||
// independent integer-order PDEs,
|
||||
//
|
||||
// A u_i + d_i u_i = c_i f in Ω, u_i = 0 on ∂Ω, i=0,...,N,
|
||||
// A u_i + d_i u_i = c_i g in Ω, u_i = 0 on ∂Ω, i=0,...,M,
|
||||
//
|
||||
// using MFEM and sum u_i to arrive at an approximate solution of the FPDE
|
||||
//
|
||||
// u ≈ Σ_{i=0}^N u_i.
|
||||
// u ≈ Σ_{i=0}^M u_i.
|
||||
//
|
||||
// (If alpha is an integer, we stop after the first PDE was solved.)
|
||||
//
|
||||
// References:
|
||||
//
|
||||
@@ -47,6 +76,8 @@
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
#include <math.h>
|
||||
#include <string>
|
||||
|
||||
#include "ex33.hpp"
|
||||
|
||||
@@ -59,8 +90,9 @@ int main(int argc, char *argv[])
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
int num_refs = 3;
|
||||
bool visualization = true;
|
||||
double alpha = 0.5;
|
||||
bool visualization = true;
|
||||
bool verification = false;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -75,6 +107,9 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&verification, "-ver", "--verification", "-no-ver",
|
||||
"--no-verification",
|
||||
"Use sinusoidal function (f) for analytic comparison.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
@@ -84,9 +119,31 @@ int main(int argc, char *argv[])
|
||||
args.PrintOptions(cout);
|
||||
|
||||
Array<double> coeffs, poles;
|
||||
int progress_steps = 1;
|
||||
|
||||
// 2. Compute the coefficients that define the integer-order PDEs.
|
||||
ComputePartialFractionApproximation(alpha,coeffs,poles);
|
||||
// 2. Compute the rational expansion coefficients that define the
|
||||
// integer-order PDEs.
|
||||
const int power_of_laplace = floor(alpha);
|
||||
double exponent_to_approximate = alpha - power_of_laplace;
|
||||
bool integer_order = false;
|
||||
// Check if alpha is an integer or not.
|
||||
if (abs(exponent_to_approximate) > 1e-12)
|
||||
{
|
||||
mfem::out << "Approximating the fractional exponent "
|
||||
<< exponent_to_approximate
|
||||
<< endl;
|
||||
ComputePartialFractionApproximation(exponent_to_approximate, coeffs,
|
||||
poles);
|
||||
|
||||
// If the example is build without LAPACK, the exponent_to_approximate
|
||||
// might be modified by the function call above.
|
||||
alpha = exponent_to_approximate + power_of_laplace;
|
||||
}
|
||||
else
|
||||
{
|
||||
integer_order = true;
|
||||
mfem::out << "Treating integer order PDE." << endl;
|
||||
}
|
||||
|
||||
// 3. Read the mesh from the given mesh file.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
@@ -99,8 +156,8 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
// 5. Define a finite element space on the mesh.
|
||||
FiniteElementCollection *fec = new H1_FECollection(order, dim);
|
||||
FiniteElementSpace fespace(&mesh, fec);
|
||||
H1_FECollection fec(order, dim);
|
||||
FiniteElementSpace fespace(&mesh, &fec);
|
||||
cout << "Number of finite element unknowns: "
|
||||
<< fespace.GetTrueVSize() << endl;
|
||||
|
||||
@@ -114,79 +171,234 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
// 7. Define diffusion coefficient, load, and solution GridFunction.
|
||||
ConstantCoefficient f(1.0);
|
||||
auto func = [&alpha](const Vector &x)
|
||||
{
|
||||
double val = 1.0;
|
||||
for (int i=0; i<x.Size(); i++)
|
||||
{
|
||||
val *= sin(M_PI*x(i));
|
||||
}
|
||||
return pow(x.Size()*pow(M_PI,2), alpha) * val;
|
||||
};
|
||||
FunctionCoefficient f(func);
|
||||
ConstantCoefficient one(1.0);
|
||||
GridFunction u(&fespace);
|
||||
u = 0.;
|
||||
GridFunction x(&fespace);
|
||||
GridFunction g(&fespace);
|
||||
u = 0.0;
|
||||
x = 0.0;
|
||||
g = 0.0;
|
||||
|
||||
// 8. Prepare for visualization.
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream xout, uout;
|
||||
ostringstream oss_x, oss_u;
|
||||
if (visualization)
|
||||
|
||||
// 9. Set up the linear form b(.) for integer-order PDE solves.
|
||||
LinearForm b(&fespace);
|
||||
if (verification)
|
||||
{
|
||||
xout.open(vishost, visport);
|
||||
xout.precision(8);
|
||||
uout.open(vishost, visport);
|
||||
uout.precision(8);
|
||||
// This statement is only relevant for the verification of the code. It
|
||||
// uses a different f such that an analytic solution is known and easy
|
||||
// to compare with the numerical one. The FPDE becomes:
|
||||
// (-Δ)^α u = (2\pi ^2)^α sin(\pi x) sin(\pi y) on [0,1]^2
|
||||
// -> u(x,y) = sin(\pi x) sin(\pi y)
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(f));
|
||||
}
|
||||
|
||||
for (int i = 0; i < coeffs.Size(); i++)
|
||||
else
|
||||
{
|
||||
// 9. Set up the linear form b(.) for integer-order PDE solve.
|
||||
LinearForm b(&fespace);
|
||||
ProductCoefficient cf(coeffs[i], f);
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(cf));
|
||||
b.Assemble();
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
}
|
||||
b.Assemble();
|
||||
|
||||
// 10. Define GridFunction for integer-order PDE solve.
|
||||
GridFunction x(&fespace);
|
||||
x = 0.0;
|
||||
// ------------------------------------------------------------------------
|
||||
// 10. Solve the PDE (-Δ)^N g = f, i.e. compute g = (-Δ)^{-1}^N f.
|
||||
// ------------------------------------------------------------------------
|
||||
|
||||
// 11. Set up the bilinear form a(.,.) for integer-order PDE solve.
|
||||
BilinearForm a(&fespace);
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
ConstantCoefficient c2(-poles[i]);
|
||||
a.AddDomainIntegrator(new MassIntegrator(c2));
|
||||
a.Assemble();
|
||||
if (power_of_laplace > 0)
|
||||
{
|
||||
// 10.1 Compute Stiffnes Matrix
|
||||
BilinearForm k(&fespace);
|
||||
k.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
k.Assemble();
|
||||
|
||||
// 12. Assemble the bilinear form and the corresponding linear system.
|
||||
OperatorPtr A;
|
||||
// 10.2 Compute Mass Matrix
|
||||
BilinearForm m(&fespace);
|
||||
m.AddDomainIntegrator(new MassIntegrator(one));
|
||||
m.Assemble();
|
||||
SparseMatrix mass;
|
||||
Array<int> empty;
|
||||
m.FormSystemMatrix(empty, mass);
|
||||
|
||||
// 10.3 Form the system of equations
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
|
||||
OperatorPtr Op;
|
||||
k.FormLinearSystem(ess_tdof_list, g, b, Op, X, B);
|
||||
GSSmoother M((SparseMatrix&)(*Op));
|
||||
|
||||
// 13. Solve the linear system A X = B.
|
||||
GSSmoother M((SparseMatrix&)(*A));
|
||||
|
||||
mfem::out << "\nSolving PDE -Δ u + " << -poles[i]
|
||||
<< " u = " << coeffs[i] << " f " << endl;
|
||||
PCG(*A, M, B, X, 3, 200, 1e-12, 0.0);
|
||||
|
||||
// 14. Recover the solution as a finite element grid function.
|
||||
a.RecoverFEMSolution(X, b, x);
|
||||
|
||||
// 15. Accumulate integer-order PDE solutions.
|
||||
u+=x;
|
||||
|
||||
// 16. Send the solutions by socket to a GLVis server.
|
||||
if (visualization)
|
||||
mfem::out << "\nComputing (-Δ) ^ -" << power_of_laplace
|
||||
<< " ( f ) " << endl;
|
||||
for (int i = 0; i < power_of_laplace; i++)
|
||||
{
|
||||
oss_x.str(""); oss_x.clear();
|
||||
oss_x << "Solution of PDE -Δ u + " << -poles[i]
|
||||
<< " u = " << coeffs[i] << " f";
|
||||
xout << "solution\n" << mesh << x
|
||||
<< "window_title '" << oss_x.str() << "'" << flush;
|
||||
// 10.4 Solve the linear system Op X = B (N times).
|
||||
PCG(*Op, M, B, X, 3, 300, 1e-12, 0.0);
|
||||
|
||||
oss_u.str(""); oss_u.clear();
|
||||
oss_u << "Solution of fractional PDE -Δ^" << alpha
|
||||
<< " u = f";
|
||||
uout << "solution\n" << mesh << u
|
||||
<< "window_title '" << oss_u.str() << "'" << flush;
|
||||
// 10.5 Visualize the solution g of -Δ ^ N g = f in the last step
|
||||
if (i == power_of_laplace - 1)
|
||||
{
|
||||
// Needed for visualization and solution verification.
|
||||
k.RecoverFEMSolution(X, b, g);
|
||||
if (integer_order && verification)
|
||||
{
|
||||
// For an integer order PDE, g is also our solution u.
|
||||
u+=g;
|
||||
}
|
||||
if (visualization)
|
||||
{
|
||||
socketstream fout;
|
||||
ostringstream oss_f;
|
||||
fout.open(vishost, visport);
|
||||
fout.precision(8);
|
||||
oss_f.str(""); oss_f.clear();
|
||||
oss_f << "Step " << progress_steps++ << ": Solution of PDE -Δ ^ "
|
||||
<< power_of_laplace
|
||||
<< " g = f";
|
||||
fout << "solution\n" << mesh << g
|
||||
<< "window_title '" << oss_f.str() << "'" << flush;
|
||||
}
|
||||
}
|
||||
|
||||
// 10.6 Prepare for next iteration (primal / dual space)
|
||||
mass.Mult(X, B);
|
||||
X.SetSubVectorComplement(ess_tdof_list,0.0);
|
||||
}
|
||||
|
||||
// 10.7 Extract solution for the next step. The b now corresponds to the
|
||||
// function g in the PDE.
|
||||
const SparseMatrix * R = fespace.GetRestrictionMatrix();
|
||||
if (R)
|
||||
{
|
||||
R->MultTranspose(B,b);
|
||||
}
|
||||
else
|
||||
{
|
||||
b = B;
|
||||
}
|
||||
}
|
||||
|
||||
// 17. Free the used memory.
|
||||
delete fec;
|
||||
// ------------------------------------------------------------------------
|
||||
// 11. Solve the fractional PDE by solving M integer order PDEs and adding
|
||||
// up the solutions.
|
||||
// ------------------------------------------------------------------------
|
||||
if (!integer_order)
|
||||
{
|
||||
// Setup visualization.
|
||||
socketstream xout, uout;
|
||||
ostringstream oss_x, oss_u;
|
||||
if (visualization)
|
||||
{
|
||||
xout.open(vishost, visport);
|
||||
xout.precision(8);
|
||||
uout.open(vishost, visport);
|
||||
uout.precision(8);
|
||||
}
|
||||
// Iterate over all expansion coefficient that contribute to the
|
||||
// solution.
|
||||
for (int i = 0; i < coeffs.Size(); i++)
|
||||
{
|
||||
mfem::out << "\nSolving PDE -Δ u + " << -poles[i]
|
||||
<< " u = " << coeffs[i] << " g " << endl;
|
||||
|
||||
|
||||
// 11.1 Reset GridFunction for integer-order PDE solve.
|
||||
x = 0.0;
|
||||
|
||||
// 11.2 Set up the bilinear form a(.,.) for integer-order PDE solve.
|
||||
BilinearForm a(&fespace);
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
ConstantCoefficient d_i(-poles[i]);
|
||||
a.AddDomainIntegrator(new MassIntegrator(d_i));
|
||||
a.Assemble();
|
||||
|
||||
// 11.3 Assemble the bilinear form and the corresponding linear system.
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
|
||||
|
||||
// 11.4 Solve the linear system A X = B.
|
||||
GSSmoother M((SparseMatrix&)(*A));
|
||||
|
||||
PCG(*A, M, B, X, 3, 300, 1e-12, 0.0);
|
||||
|
||||
// 11.5 Recover the solution as a finite element grid function.
|
||||
a.RecoverFEMSolution(X, b, x);
|
||||
|
||||
// 11.6 Accumulate integer-order PDE solutions.
|
||||
x *= coeffs[i];
|
||||
u += x;
|
||||
|
||||
// 11.7 Send fractional PDE solution to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
oss_x.str(""); oss_x.clear();
|
||||
oss_x << "Step " << progress_steps
|
||||
<< ": Solution of PDE -Δ u + " << -poles[i]
|
||||
<< " u = " << coeffs[i] << " g";
|
||||
xout << "solution\n" << mesh << x
|
||||
<< "window_title '" << oss_x.str() << "'" << flush;
|
||||
|
||||
oss_u.str(""); oss_u.clear();
|
||||
oss_u << "Step " << progress_steps + 1
|
||||
<< ": Solution of fractional PDE (-Δ)^" << alpha
|
||||
<< " u = f";
|
||||
uout << "solution\n" << mesh << u
|
||||
<< "window_title '" << oss_u.str() << "'"
|
||||
<< flush;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// ------------------------------------------------------------------------
|
||||
// 12. (optional) Verify the solution.
|
||||
// ------------------------------------------------------------------------
|
||||
if (verification)
|
||||
{
|
||||
auto solution = [] (const Vector &x)
|
||||
{
|
||||
double val = 1.0;
|
||||
for (int i=0; i<x.Size(); i++)
|
||||
{
|
||||
val *= sin(M_PI*x(i));
|
||||
}
|
||||
return val;
|
||||
};
|
||||
FunctionCoefficient sol(solution);
|
||||
double l2_error = u.ComputeL2Error(sol);
|
||||
|
||||
string analytic_solution,expected_mesh;
|
||||
switch (dim)
|
||||
{
|
||||
case 1:
|
||||
analytic_solution = "sin(π x)";
|
||||
expected_mesh = "inline_segment.mesh";
|
||||
break;
|
||||
case 2:
|
||||
analytic_solution = "sin(π x) sin(π y)";
|
||||
expected_mesh = "inline_quad.mesh";
|
||||
break;
|
||||
default:
|
||||
analytic_solution = "sin(π x) sin(π y) sin(π z)";
|
||||
expected_mesh = "inline_hex.mesh";
|
||||
break;
|
||||
}
|
||||
|
||||
mfem::out << "\n" << string(80,'=')
|
||||
<< "\n\nSolution Verification in "<< dim << "D \n\n"
|
||||
<< "Analytic solution : " << analytic_solution << "\n"
|
||||
<< "Expected mesh : " << expected_mesh <<"\n"
|
||||
<< "Your mesh : " << mesh_file << "\n"
|
||||
<< "L2 error : " << l2_error << "\n\n"
|
||||
<< string(80,'=') << endl;
|
||||
}
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
+15
-4
@@ -32,6 +32,7 @@
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
#include <string>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
@@ -249,6 +250,13 @@ void PartialFractionExpansion(double scale, Array<double> & poles,
|
||||
coeffs.SetSize(psize);
|
||||
coeffs = scale;
|
||||
|
||||
// Note: C p(z)/q(z) = Σ_i c_i / (z - p_i) results in an system of equations
|
||||
// where the N unknowns are the coefficients c_i. After multiplying the
|
||||
// system with q(z), the coefficients c_i can be computed analytically by
|
||||
// choosing N values for z. Choosing z_j = = p_j diagonalizes the system and
|
||||
// one can obtain an analytic form for the c_i coefficients. The result is
|
||||
// implemented in the code block below.
|
||||
|
||||
for (int i=0; i<psize; i++)
|
||||
{
|
||||
double tmp_numer=1.0;
|
||||
@@ -305,9 +313,12 @@ void ComputePartialFractionApproximation(double & alpha,
|
||||
if (print_warning)
|
||||
{
|
||||
mfem::out
|
||||
<< "\nMFEM is compiled without LAPACK.\nUsing precomputed values for PartialFractionApproximation. \n"
|
||||
<< "Only alpha = 0.33, 0.5, and 0.99 are available.\nThe default is alpha = 0.5."
|
||||
<< std::endl;
|
||||
<< "\n" << string(80, '=')
|
||||
<< "\nMFEM is compiled without LAPACK."
|
||||
<< "\nUsing precomputed values for PartialFractionApproximation."
|
||||
<< "\nOnly alpha = 0.33, 0.5, and 0.99 are available."
|
||||
<< "\nThe default is alpha = 0.5.\n" << string(80, '=') << "\n"
|
||||
<< endl;
|
||||
}
|
||||
const double eps = std::numeric_limits<double>::epsilon();
|
||||
|
||||
@@ -351,7 +362,7 @@ void ComputePartialFractionApproximation(double & alpha,
|
||||
|
||||
if (print_warning)
|
||||
{
|
||||
mfem::out << "Using precomputed values for alpha = "
|
||||
mfem::out << "=> Using precomputed values for alpha = "
|
||||
<< alpha << "\n" << std::endl;
|
||||
}
|
||||
|
||||
|
||||
+294
-143
@@ -3,34 +3,63 @@
|
||||
// Compile with: make ex33p
|
||||
//
|
||||
// Sample runs: mpirun -np 4 ex33p -m ../data/square-disc.mesh -alpha 0.33 -o 2
|
||||
// mpirun -np 4 ex33p -m ../data/square-disc.mesh -alpha 4.5 -o 3
|
||||
// mpirun -np 4 ex33p -m ../data/star.mesh -alpha 1.4 -o 3
|
||||
// mpirun -np 4 ex33p -m ../data/star.mesh -alpha 0.99 -o 3
|
||||
// mpirun -np 4 ex33p -m ../data/inline-quad.mesh -alpha 0.5 -o 3
|
||||
// mpirun -np 4 ex33p -m ../data/disc-nurbs.mesh -alpha 0.33 -o 3
|
||||
// mpirun -np 4 ex33p -m ../data/amr-quad.mesh -alpha 1.5 -o 3
|
||||
// mpirun -np 4 ex33p -m ../data/disc-nurbs.mesh -alpha 0.33 -o 3 -r 2
|
||||
// mpirun -np 4 ex33p -m ../data/disc-nurbs.mesh -alpha 2.4 -o 3 -r 4
|
||||
// mpirun -np 4 ex33p -m ../data/l-shape.mesh -alpha 0.33 -o 3 -r 4
|
||||
// mpirun -np 4 ex33p -m ../data/l-shape.mesh -alpha 1.7 -o 3 -r 5
|
||||
//
|
||||
// Verification runs:
|
||||
// mpirun -np 4 ex33p -m ../data/inline-segment.mesh -ver -alpha 1.7 -o 2 -r 2
|
||||
// mpirun -np 4 ex33p -m ../data/inline-quad.mesh -ver -alpha 1.2 -o 2 -r 2
|
||||
// mpirun -np 4 ex33p -m ../data/amr-quad.mesh -ver -alpha 2.6 -o 2 -r 2
|
||||
// mpirun -np 4 ex33p -m ../data/inline-hex.mesh -ver -alpha 0.3 -o 2 -r 1
|
||||
|
||||
// Note: the analytic solution to this problem is u = ∏_{i=0}^{dim-1} sin(π x_i)
|
||||
// for all alpha.
|
||||
//
|
||||
// Description:
|
||||
//
|
||||
// In this example we solve the following fractional PDE with MFEM:
|
||||
//
|
||||
// ( - Δ )^α u = f in Ω, u = 0 on ∂Ω, 0 < α < 1,
|
||||
// ( - Δ )^α u = f in Ω, u = 0 on ∂Ω, 0 < α,
|
||||
//
|
||||
// To solve this FPDE, we rely on a rational approximation [2] of the normal
|
||||
// linear operator A^{-α}, where A = - Δ (with associated homogeneous
|
||||
// boundary conditions). Namely, we first approximate the operator
|
||||
// To solve this FPDE, we apply the operator ( - Δ )^(-N), where the integer
|
||||
// N is given by floor(α). By doing so, we obtain
|
||||
//
|
||||
// A^{-α} ≈ Σ_{i=0}^N c_i (A + d_i I)^{-1}, d_0 = 0, d_i > 0,
|
||||
// ( - Δ )^(α-N) u = ( - Δ )^(-N) f in Ω, u = 0 on ∂Ω, 0 < α.
|
||||
//
|
||||
// We first compute the right hand side by solving the integer order PDE
|
||||
//
|
||||
// ( - Δ )^N g = f in Ω, g = ( - Δ )^k g = 0 on ∂Ω, k = 1,..,N-1
|
||||
//
|
||||
// The remaining FPDE is then given by
|
||||
//
|
||||
// ( - Δ )^(α-N) u = g in Ω, u = 0 on ∂Ω.
|
||||
//
|
||||
// We rely on a rational approximation [2] of the normal linear operator
|
||||
// A^{-α + N}, where A = - Δ (with associated homogeneous boundary conditions)
|
||||
// and (a-N) in (0,1). We approximate the operator
|
||||
//
|
||||
// A^{-α+N} ≈ Σ_{i=0}^M c_i (A + d_i I)^{-1}, d_0 = 0, d_i > 0,
|
||||
//
|
||||
// where I is the L2-identity operator and the coefficients c_i and d_i
|
||||
// are generated offline to a prescribed accuracy in a pre-processing step.
|
||||
// We use the triple-A algorithm [1] to generate the rational approximation
|
||||
// that this partial fractional expansion derives from. We then solve N+1
|
||||
// that this partial fractional expansion derives from. We then solve M+1
|
||||
// independent integer-order PDEs,
|
||||
//
|
||||
// A u_i + d_i u_i = c_i f in Ω, u_i = 0 on ∂Ω, i=0,...,N,
|
||||
// A u_i + d_i u_i = c_i g in Ω, u_i = 0 on ∂Ω, i=0,...,M,
|
||||
//
|
||||
// using MFEM and sum u_i to arrive at an approximate solution of the FPDE
|
||||
//
|
||||
// u ≈ Σ_{i=0}^N u_i.
|
||||
// u ≈ Σ_{i=0}^M u_i.
|
||||
//
|
||||
// (If alpha is an integer, we stop after the first PDE was solved.)
|
||||
//
|
||||
// References:
|
||||
//
|
||||
@@ -47,6 +76,8 @@
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
#include <math.h>
|
||||
#include <string>
|
||||
|
||||
#include "ex33.hpp"
|
||||
|
||||
@@ -65,9 +96,9 @@ int main(int argc, char *argv[])
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
int num_refs = 3;
|
||||
bool visualization = true;
|
||||
bool visualize_x = false;
|
||||
double alpha = 0.5;
|
||||
bool visualization = true;
|
||||
bool verification = false;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -79,12 +110,12 @@ int main(int argc, char *argv[])
|
||||
"Number of uniform refinements");
|
||||
args.AddOption(&alpha, "-alpha", "--alpha",
|
||||
"Fractional exponent");
|
||||
args.AddOption(&visualize_x, "-vis_x", "--visualize_x", "-no-vis_x",
|
||||
"--no-visualization_x",
|
||||
"Enable or disable GLVis visualization of each integer-order PDE solution.");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization of the fractional PDE solution.");
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&verification, "-ver", "--verification", "-no-ver",
|
||||
"--no-verification",
|
||||
"Use sinusoidal function (f) for analytic comparison.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
@@ -97,61 +128,51 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
Array<double> coeffs, poles;
|
||||
int progress_steps = 1;
|
||||
|
||||
// 2. Compute the coefficients that define the integer-order PDEs.
|
||||
ComputePartialFractionApproximation(alpha,coeffs,poles);
|
||||
|
||||
int num_par_solves;
|
||||
int max_par_solves = max(1,num_procs/2);
|
||||
for (num_par_solves=max_par_solves; num_par_solves>0; num_par_solves--)
|
||||
// 2. Compute the rational expansion coefficients that define the
|
||||
// integer-order PDEs.
|
||||
const int power_of_laplace = floor(alpha);
|
||||
double exponent_to_approximate = alpha - power_of_laplace;
|
||||
bool integer_order = false;
|
||||
// Check if alpha is an integer or not.
|
||||
if (abs(exponent_to_approximate) > 1e-12)
|
||||
{
|
||||
if (num_procs%num_par_solves==0 && num_par_solves<coeffs.Size())
|
||||
if (Mpi::Root())
|
||||
{
|
||||
break;
|
||||
mfem::out << "Approximating the fractional exponent "
|
||||
<< exponent_to_approximate
|
||||
<< endl;
|
||||
}
|
||||
ComputePartialFractionApproximation(exponent_to_approximate, coeffs,
|
||||
poles);
|
||||
|
||||
// If the example is build without LAPACK, the exponent_to_approximate
|
||||
// might be modified by the function call above.
|
||||
alpha = exponent_to_approximate + power_of_laplace;
|
||||
}
|
||||
else
|
||||
{
|
||||
integer_order = true;
|
||||
if (Mpi::Root())
|
||||
{
|
||||
mfem::out << "Treating integer order PDE." << endl;
|
||||
}
|
||||
}
|
||||
if (num_par_solves == 1) {num_par_solves = num_procs;}
|
||||
|
||||
int solver_ranks = num_procs/num_par_solves;
|
||||
|
||||
// 3. Split the MPI communicator:
|
||||
// row_comm is used for parallel partition of the mesh
|
||||
// col_comm is used for independent integer-order solves
|
||||
int row_color = myid / solver_ranks; // Determine color based on row
|
||||
int col_color = myid % solver_ranks; // Determine color based on col
|
||||
|
||||
MPI_Comm row_comm, col_comm;
|
||||
MPI_Comm_split(MPI_COMM_WORLD, row_color, myid, &row_comm);
|
||||
MPI_Comm_split(MPI_COMM_WORLD, col_color, myid, &col_comm);
|
||||
|
||||
int row_rank, row_size, col_rank, col_size;
|
||||
MPI_Comm_rank(row_comm, &row_rank);
|
||||
MPI_Comm_size(row_comm, &row_size);
|
||||
MPI_Comm_rank(col_comm, &col_rank);
|
||||
MPI_Comm_size(col_comm, &col_size);
|
||||
|
||||
if (Mpi::Root())
|
||||
{
|
||||
mfem::out << "\nTotal number of MPI ranks = " << num_procs << endl;
|
||||
mfem::out << "Number of independent parallel solves = " << col_size << endl;
|
||||
mfem::out << "Number of MPI ranks within each solve = " << row_size
|
||||
<<"\n" << endl;
|
||||
}
|
||||
|
||||
// 4. Read the mesh from the given mesh file.
|
||||
// 3. Read the mesh from the given mesh file.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
|
||||
// 5. Refine the mesh to increase the resolution.
|
||||
// 4. Refine the mesh to increase the resolution.
|
||||
for (int i = 0; i < num_refs; i++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
|
||||
ParMesh pmesh(row_comm, mesh);
|
||||
ParMesh pmesh(MPI_COMM_WORLD, mesh);
|
||||
mesh.Clear();
|
||||
|
||||
// 6. Define a finite element space on the mesh.
|
||||
// 5. Define a finite element space on the mesh.
|
||||
H1_FECollection fec(order, dim);
|
||||
ParFiniteElementSpace fespace(&pmesh, &fec);
|
||||
if (Mpi::Root())
|
||||
@@ -160,7 +181,7 @@ int main(int argc, char *argv[])
|
||||
<< fespace.GetTrueVSize() << endl;
|
||||
}
|
||||
|
||||
// 7. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
if (pmesh.bdr_attributes.Size())
|
||||
{
|
||||
@@ -169,120 +190,250 @@ int main(int argc, char *argv[])
|
||||
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 8. Define diffusion coefficient, load, and solution GridFunction.
|
||||
ConstantCoefficient f(1.0);
|
||||
// 7. Define diffusion coefficient, load, and solution GridFunction.
|
||||
auto func = [&alpha](const Vector &x)
|
||||
{
|
||||
double val = 1.0;
|
||||
for (int i=0; i<x.Size(); i++)
|
||||
{
|
||||
val *= sin(M_PI*x(i));
|
||||
}
|
||||
return pow(x.Size()*pow(M_PI,2), alpha) * val;
|
||||
};
|
||||
FunctionCoefficient f(func);
|
||||
ConstantCoefficient one(1.0);
|
||||
ParGridFunction u(&fespace);
|
||||
ParGridFunction x(&fespace);
|
||||
ParGridFunction g(&fespace);
|
||||
u = 0.0;
|
||||
x = 0.0;
|
||||
g = 0.0;
|
||||
|
||||
// 8. Prepare for visualization.
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
|
||||
// 9. Set up the linear form b(.) for integer-order PDE solves.
|
||||
ParLinearForm b(&fespace);
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(f));
|
||||
if (verification)
|
||||
{
|
||||
// This statement is only relevant for the verification of the code. It
|
||||
// uses a different f such that an analytic solution is known and easy
|
||||
// to compare with the numerical one. The FPDE becomes:
|
||||
// (-Δ)^α u = (2\pi ^2)^α sin(\pi x) sin(\pi y) on [0,1]^2
|
||||
// -> u(x,y) = sin(\pi x) sin(\pi y)
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(f));
|
||||
}
|
||||
else
|
||||
{
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
}
|
||||
b.Assemble();
|
||||
|
||||
int my_coeff_size = max(coeffs.Size()/col_size,1);
|
||||
int ibeg = col_rank*my_coeff_size;
|
||||
if (ibeg + 2*my_coeff_size > coeffs.Size())
|
||||
// ------------------------------------------------------------------------
|
||||
// 10. Solve the PDE (-Δ)^N g = f, i.e. compute g = (-Δ)^{-1}^N f.
|
||||
// ------------------------------------------------------------------------
|
||||
|
||||
if (power_of_laplace > 0)
|
||||
{
|
||||
my_coeff_size = coeffs.Size()-col_rank*my_coeff_size;
|
||||
}
|
||||
else if (ibeg > coeffs.Size() - 1)
|
||||
{
|
||||
my_coeff_size = 0;
|
||||
}
|
||||
// 10.1 Compute Stiffnes Matrix
|
||||
ParBilinearForm k(&fespace);
|
||||
k.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
k.Assemble();
|
||||
|
||||
int iend = ibeg+my_coeff_size;
|
||||
// 10.2 Compute Mass Matrix
|
||||
ParBilinearForm m(&fespace);
|
||||
m.AddDomainIntegrator(new MassIntegrator(one));
|
||||
m.Assemble();
|
||||
HypreParMatrix mass;
|
||||
Array<int> empty;
|
||||
m.FormSystemMatrix(empty, mass);
|
||||
|
||||
|
||||
for (int i = ibeg; i < iend; i++)
|
||||
{
|
||||
// 10. Reset GridFunction for integer-order PDE solve.
|
||||
x = 0.0;
|
||||
|
||||
// 11. Set up the bilinear form a(.,.) for integer-order PDE solve.
|
||||
ParBilinearForm a(&fespace);
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
ConstantCoefficient d_i(-poles[i]);
|
||||
a.AddDomainIntegrator(new MassIntegrator(d_i));
|
||||
a.Assemble();
|
||||
|
||||
// 12. Assemble the bilinear form and the corresponding linear system.
|
||||
OperatorPtr A;
|
||||
// 10.3 Form the system of equations
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
|
||||
|
||||
// 13. Solve the linear system A X = B.
|
||||
HypreBoomerAMG * prec = new HypreBoomerAMG;
|
||||
prec->SetPrintLevel(-1);
|
||||
|
||||
int print_level = (col_rank==0) ? 3 : 0;
|
||||
if (Mpi::Root())
|
||||
{
|
||||
mfem::out << "\nMPI rank " << myid
|
||||
<< ": Solving PDE -Δ u + " << -poles[i]
|
||||
<< " u = " << coeffs[i] << " f " << endl;
|
||||
}
|
||||
CGSolver cg(row_comm);
|
||||
OperatorPtr Op;
|
||||
k.FormLinearSystem(ess_tdof_list, g, b, Op, X, B);
|
||||
HypreBoomerAMG prec;
|
||||
prec.SetPrintLevel(-1);
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(2000);
|
||||
cg.SetPrintLevel(print_level);
|
||||
cg.SetPreconditioner(*prec);
|
||||
cg.SetOperator(*A);
|
||||
cg.Mult(B, X);
|
||||
delete prec;
|
||||
cg.SetPrintLevel(3);
|
||||
cg.SetPreconditioner(prec);
|
||||
cg.SetOperator(*Op);
|
||||
|
||||
// 14. Recover the solution as a finite element grid function.
|
||||
a.RecoverFEMSolution(X, b, x);
|
||||
|
||||
// 15. Accumulate integer-order PDE solutions.
|
||||
x *= coeffs[i];
|
||||
u += x;
|
||||
|
||||
// 16. Send integer-order PDE solutions to a GLVis server.
|
||||
if (visualize_x)
|
||||
if (Mpi::Root())
|
||||
{
|
||||
if (col_rank > 0 && i < iend-1)
|
||||
mfem::out << "\nComputing (-Δ) ^ -" << power_of_laplace
|
||||
<< " ( f ) " << endl;
|
||||
}
|
||||
for (int i = 0; i < power_of_laplace; i++)
|
||||
{
|
||||
// 10.4 Solve the linear system Op X = B (N times).
|
||||
cg.Mult(B, X);
|
||||
// 10.5 Visualize the solution g of -Δ ^ N g = f in the last step
|
||||
if (i == power_of_laplace - 1)
|
||||
{
|
||||
MPI_Status status;
|
||||
MPI_Recv(nullptr,0,MPI_INT, col_rank-1,0,col_comm,&status);
|
||||
// Needed for visualization and solution verification.
|
||||
k.RecoverFEMSolution(X, b, g);
|
||||
if (integer_order && verification)
|
||||
{
|
||||
// For an integer order PDE, g is also our solution u.
|
||||
u+=g;
|
||||
}
|
||||
if (visualization)
|
||||
{
|
||||
socketstream fout;
|
||||
ostringstream oss_f;
|
||||
fout.open(vishost, visport);
|
||||
fout.precision(8);
|
||||
oss_f.str(""); oss_f.clear();
|
||||
oss_f << "Step " << progress_steps++ << ": Solution of PDE -Δ ^ "
|
||||
<< power_of_laplace
|
||||
<< " g = f";
|
||||
fout << "parallel " << num_procs << " " << myid << "\n"
|
||||
<< "solution\n" << pmesh << g
|
||||
<< "window_title '" << oss_f.str() << "'" << flush;
|
||||
}
|
||||
}
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream xout(vishost, visport);
|
||||
|
||||
// 10.6 Prepare for next iteration (primal / dual space)
|
||||
mass.Mult(X, B);
|
||||
X.SetSubVectorComplement(ess_tdof_list,0.0);
|
||||
}
|
||||
|
||||
// 10.7 Extract solution for the next step. The b now corresponds to the
|
||||
// function g in the PDE.
|
||||
const SparseMatrix* rm = fespace.GetRestrictionMatrix();
|
||||
rm->MultTranspose(B, b);
|
||||
}
|
||||
|
||||
// ------------------------------------------------------------------------
|
||||
// 11. Solve the fractional PDE by solving M integer order PDEs and adding
|
||||
// up the solutions.
|
||||
// ------------------------------------------------------------------------
|
||||
if (!integer_order)
|
||||
{
|
||||
// Setup visualization.
|
||||
socketstream xout, uout;
|
||||
ostringstream oss_x, oss_u;
|
||||
if (visualization)
|
||||
{
|
||||
xout.open(vishost, visport);
|
||||
xout.precision(8);
|
||||
ostringstream oss;
|
||||
oss << "Solution of PDE -Δ u + " << -poles[i]
|
||||
<< " u = " << coeffs[i] << " f" ;
|
||||
xout << "parallel " << row_size << " " << row_rank << "\n";
|
||||
xout << "solution\n" << pmesh << x
|
||||
<< "window_title '" << oss.str() << "'" << flush;
|
||||
if (col_rank < col_size-1)
|
||||
uout.open(vishost, visport);
|
||||
uout.precision(8);
|
||||
}
|
||||
// Iterate over all expansion coefficient that contribute to the
|
||||
// solution.
|
||||
for (int i = 0; i < coeffs.Size(); i++)
|
||||
{
|
||||
if (Mpi::Root())
|
||||
{
|
||||
MPI_Send(nullptr,0,MPI_INT,col_rank+1,0,col_comm);
|
||||
mfem::out << "\nSolving PDE -Δ u + " << -poles[i]
|
||||
<< " u = " << coeffs[i] << " g " << endl;
|
||||
}
|
||||
|
||||
// 11.1 Reset GridFunction for integer-order PDE solve.
|
||||
x = 0.0;
|
||||
|
||||
// 11.2 Set up the bilinear form a(.,.) for integer-order PDE solve.
|
||||
ParBilinearForm a(&fespace);
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
ConstantCoefficient d_i(-poles[i]);
|
||||
a.AddDomainIntegrator(new MassIntegrator(d_i));
|
||||
a.Assemble();
|
||||
|
||||
// 11.3 Assemble the bilinear form and the corresponding linear system.
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
|
||||
|
||||
// 11.4 Solve the linear system A X = B.
|
||||
HypreBoomerAMG prec;
|
||||
prec.SetPrintLevel(-1);
|
||||
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(2000);
|
||||
cg.SetPrintLevel(3);
|
||||
cg.SetPreconditioner(prec);
|
||||
cg.SetOperator(*A);
|
||||
cg.Mult(B, X);
|
||||
|
||||
// 11.5 Recover the solution as a finite element grid function.
|
||||
a.RecoverFEMSolution(X, b, x);
|
||||
|
||||
// 11.6 Accumulate integer-order PDE solutions.
|
||||
x *= coeffs[i];
|
||||
u += x;
|
||||
|
||||
// 11.7 Send fractional PDE solution to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
oss_x.str(""); oss_x.clear();
|
||||
oss_x << "Step " << progress_steps
|
||||
<< ": Solution of PDE -Δ u + " << -poles[i]
|
||||
<< " u = " << coeffs[i] << " g";
|
||||
xout << "parallel " << num_procs << " " << myid << "\n"
|
||||
<< "solution\n" << pmesh << x
|
||||
<< "window_title '" << oss_x.str() << "'" << flush;
|
||||
|
||||
oss_u.str(""); oss_u.clear();
|
||||
oss_u << "Step " << progress_steps + 1
|
||||
<< ": Solution of fractional PDE (-Δ)^" << alpha
|
||||
<< " u = f";
|
||||
uout << "parallel " << num_procs << " " << myid << "\n"
|
||||
<< "solution\n" << pmesh << u
|
||||
<< "window_title '" << oss_u.str() << "'"
|
||||
<< flush;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// 17. Accumulate for the fractional PDE solution
|
||||
MPI_Allreduce(MPI_IN_PLACE, u.GetData(), u.Size(),
|
||||
MPI_DOUBLE, MPI_SUM,col_comm);
|
||||
|
||||
// 18. Send fractional PDE solution to a GLVis server.
|
||||
if (visualization)
|
||||
// ------------------------------------------------------------------------
|
||||
// 12. (optional) Verify the solution.
|
||||
// ------------------------------------------------------------------------
|
||||
if (verification)
|
||||
{
|
||||
if (col_rank == 0)
|
||||
auto solution = [] (const Vector &x)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream uout(vishost, visport);
|
||||
uout.precision(8);
|
||||
ostringstream oss;
|
||||
oss << "Solution of fractional PDE -Δ^" << alpha
|
||||
<< " u = f" ;
|
||||
uout << "parallel " << row_size << " " << row_rank << "\n";
|
||||
uout << "solution\n" << pmesh << u
|
||||
<< "window_title '" << oss.str() << "'" << flush;
|
||||
double val = 1.0;
|
||||
for (int i=0; i<x.Size(); i++)
|
||||
{
|
||||
val *= sin(M_PI*x(i));
|
||||
}
|
||||
return val;
|
||||
};
|
||||
FunctionCoefficient sol(solution);
|
||||
double l2_error = u.ComputeL2Error(sol);
|
||||
|
||||
if (Mpi::Root())
|
||||
{
|
||||
string analytic_solution,expected_mesh;
|
||||
switch (dim)
|
||||
{
|
||||
case 1:
|
||||
analytic_solution = "sin(π x)";
|
||||
expected_mesh = "inline_segment.mesh";
|
||||
break;
|
||||
case 2:
|
||||
analytic_solution = "sin(π x) sin(π y)";
|
||||
expected_mesh = "inline_quad.mesh";
|
||||
break;
|
||||
default:
|
||||
analytic_solution = "sin(π x) sin(π y) sin(π z)";
|
||||
expected_mesh = "inline_hex.mesh";
|
||||
break;
|
||||
}
|
||||
|
||||
mfem::out << "\n" << string(80,'=')
|
||||
<< "\n\nSolution Verification in "<< dim << "D \n\n"
|
||||
<< "Analytic solution : " << analytic_solution << "\n"
|
||||
<< "Expected mesh : " << expected_mesh <<"\n"
|
||||
<< "Your mesh : " << mesh_file << "\n"
|
||||
<< "L2 error : " << l2_error << "\n\n"
|
||||
<< string(80,'=') << endl;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -450,7 +450,7 @@ int main(int argc, char *argv[])
|
||||
for (int ti = 0; !done; )
|
||||
{
|
||||
// We cannot match exactly the time history of the Run method
|
||||
// since we are explictly telling PETSc to use a time step
|
||||
// since we are explicitly telling PETSc to use a time step
|
||||
double dt_real = min(dt, t_final - t);
|
||||
ode_solver->Step(*U, t, dt_real);
|
||||
ti++;
|
||||
|
||||
@@ -39,6 +39,7 @@ set(SRCS
|
||||
complex_fem.cpp
|
||||
convergence.cpp
|
||||
datacollection.cpp
|
||||
dgmassinv.cpp
|
||||
doftrans.cpp
|
||||
eltrans.cpp
|
||||
estimators.cpp
|
||||
@@ -72,6 +73,7 @@ set(SRCS
|
||||
linearform.cpp
|
||||
linearform_ext.cpp
|
||||
lininteg.cpp
|
||||
lininteg_boundary.cpp
|
||||
lininteg_domain.cpp
|
||||
lininteg_domain_grad.cpp
|
||||
lor/lor.cpp
|
||||
@@ -88,6 +90,7 @@ set(SRCS
|
||||
fespacehierarchy.cpp
|
||||
nonlininteg_vectorconvection.cpp
|
||||
nonlininteg_vectorconvection_mf.cpp
|
||||
qfunction.cpp
|
||||
qinterp/det.cpp
|
||||
qinterp/eval_by_nodes.cpp
|
||||
qinterp/eval_by_vdim.cpp
|
||||
@@ -95,6 +98,7 @@ set(SRCS
|
||||
qinterp/grad_by_vdim.cpp
|
||||
qinterp/grad_phys_by_nodes.cpp
|
||||
qinterp/grad_phys_by_vdim.cpp
|
||||
qspace.cpp
|
||||
quadinterpolator.cpp
|
||||
quadinterpolator_face.cpp
|
||||
restriction.cpp
|
||||
@@ -136,10 +140,13 @@ set(HDRS
|
||||
bilinearform.hpp
|
||||
bilinearform_ext.hpp
|
||||
bilininteg.hpp
|
||||
bilininteg_mass_pa.hpp
|
||||
coefficient.hpp
|
||||
complex_fem.hpp
|
||||
convergence.hpp
|
||||
datacollection.hpp
|
||||
dgmassinv.hpp
|
||||
dgmassinv_kernels.hpp
|
||||
doftrans.hpp
|
||||
eltrans.hpp
|
||||
estimators.hpp
|
||||
@@ -189,9 +196,11 @@ set(HDRS
|
||||
nonlinearform.hpp
|
||||
nonlinearform_ext.hpp
|
||||
nonlininteg.hpp
|
||||
qfunction.hpp
|
||||
qinterp/dispatch.hpp
|
||||
qinterp/eval.hpp
|
||||
qinterp/grad.hpp
|
||||
qspace.hpp
|
||||
quadinterpolator.hpp
|
||||
quadinterpolator_face.hpp
|
||||
restriction.hpp
|
||||
|
||||
@@ -992,6 +992,7 @@ void BilinearForm::EliminateVDofs(const Array<int> &vdofs_,
|
||||
mat_e = new SparseMatrix(height);
|
||||
}
|
||||
|
||||
vdofs_.HostRead();
|
||||
for (int i = 0; i < vdofs_.Size(); i++)
|
||||
{
|
||||
int vdof = vdofs_[i];
|
||||
|
||||
+10
-2
@@ -333,7 +333,7 @@ public:
|
||||
|
||||
|
||||
/** @brief Nullifies the internal matrix \f$ M \f$ and returns a pointer
|
||||
to it. Used for transfering ownership. */
|
||||
to it. Used for transferring ownership. */
|
||||
SparseMatrix *LoseMat() { SparseMatrix *tmp = mat; mat = NULL; return tmp; }
|
||||
|
||||
/** @brief Returns a const reference to the sparse matrix of eliminated b.c.:
|
||||
@@ -438,6 +438,14 @@ public:
|
||||
virtual const Operator *GetOutputRestriction() const
|
||||
{ return GetRestriction(); }
|
||||
|
||||
/// @brief Compute serial RAP operator and store it in @a A as a SparseMatrix.
|
||||
void SerialRAP(OperatorHandle &A)
|
||||
{
|
||||
MFEM_ASSERT(mat, "SerialRAP requires the SparseMatrix to be assembled.");
|
||||
ConformingAssemble();
|
||||
A.Reset(mat, false);
|
||||
}
|
||||
|
||||
/** @brief Form the linear system A X = B, corresponding to this bilinear
|
||||
form and the linear form @a b(.). */
|
||||
/** This method applies any necessary transformations to the linear system
|
||||
@@ -766,7 +774,7 @@ public:
|
||||
SparseMatrix &SpMat() { return *mat; }
|
||||
|
||||
/** @brief Nullifies the internal matrix \f$ M \f$ and returns a pointer
|
||||
to it. Used for transfering ownership. */
|
||||
to it. Used for transferring ownership. */
|
||||
SparseMatrix *LoseMat() { SparseMatrix *tmp = mat; mat = NULL; return tmp; }
|
||||
|
||||
/// Adds a domain integrator. Assumes ownership of @a bfi.
|
||||
|
||||
+67
-12
@@ -160,7 +160,7 @@ void MFBilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
intFaceIntegrators[i]->AddMultMF(int_face_X, int_face_Y);
|
||||
}
|
||||
int_face_restrict_lex->AddMultTranspose(int_face_Y, y);
|
||||
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -176,7 +176,7 @@ void MFBilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
bdrFaceIntegrators[i]->AddMultMF(bdr_face_X, bdr_face_Y);
|
||||
}
|
||||
bdr_face_restrict_lex->AddMultTranspose(bdr_face_Y, y);
|
||||
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -217,7 +217,7 @@ void MFBilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
intFaceIntegrators[i]->AddMultTransposeMF(int_face_X, int_face_Y);
|
||||
}
|
||||
int_face_restrict_lex->AddMultTranspose(int_face_Y, y);
|
||||
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -233,7 +233,7 @@ void MFBilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
bdrFaceIntegrators[i]->AddMultTransposeMF(bdr_face_X, bdr_face_Y);
|
||||
}
|
||||
bdr_face_restrict_lex->AddMultTranspose(bdr_face_Y, y);
|
||||
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -251,6 +251,7 @@ PABilinearFormExtension::PABilinearFormExtension(BilinearForm *form)
|
||||
|
||||
void PABilinearFormExtension::SetupRestrictionOperators(const L2FaceValues m)
|
||||
{
|
||||
if ( Device::Allows(Backend::CEED_MASK) ) { return; }
|
||||
ElementDofOrdering ordering = UsesTensorBasis(*a->FESpace())?
|
||||
ElementDofOrdering::LEXICOGRAPHIC:
|
||||
ElementDofOrdering::NATIVE;
|
||||
@@ -417,7 +418,7 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
intFaceIntegrators[i]->AddMultPA(int_face_X, int_face_Y);
|
||||
}
|
||||
int_face_restrict_lex->AddMultTranspose(int_face_Y, y);
|
||||
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -433,7 +434,7 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
bdrFaceIntegrators[i]->AddMultPA(bdr_face_X, bdr_face_Y);
|
||||
}
|
||||
bdr_face_restrict_lex->AddMultTranspose(bdr_face_Y, y);
|
||||
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -474,7 +475,7 @@ void PABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
intFaceIntegrators[i]->AddMultTransposePA(int_face_X, int_face_Y);
|
||||
}
|
||||
int_face_restrict_lex->AddMultTranspose(int_face_Y, y);
|
||||
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -490,7 +491,7 @@ void PABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
bdrFaceIntegrators[i]->AddMultTransposePA(bdr_face_X, bdr_face_Y);
|
||||
}
|
||||
bdr_face_restrict_lex->AddMultTranspose(bdr_face_Y, y);
|
||||
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -667,7 +668,7 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
Y(j, 0, f) += res;
|
||||
});
|
||||
// Apply the Interior Face Restriction transposed
|
||||
int_face_restrict_lex->AddMultTranspose(int_face_Y, y);
|
||||
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -698,7 +699,7 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
Y(j, f) += res;
|
||||
});
|
||||
// Apply the Boundary Face Restriction transposed
|
||||
bdr_face_restrict_lex->AddMultTranspose(bdr_face_Y, y);
|
||||
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -795,7 +796,7 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
Y(j, 0, f) += res;
|
||||
});
|
||||
// Apply the Interior Face Restriction transposed
|
||||
int_face_restrict_lex->AddMultTranspose(int_face_Y, y);
|
||||
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -826,7 +827,7 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
Y(j, f) += res;
|
||||
});
|
||||
// Apply the Boundary Face Restriction transposed
|
||||
bdr_face_restrict_lex->AddMultTranspose(bdr_face_Y, y);
|
||||
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -956,6 +957,60 @@ void FABilinearFormExtension::Assemble()
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void FABilinearFormExtension::RAP(OperatorHandle &A)
|
||||
{
|
||||
#ifdef MFEM_USE_MPI
|
||||
if ( auto pa = dynamic_cast<ParBilinearForm*>(a) )
|
||||
{
|
||||
pa->ParallelRAP(*pa->mat, A);
|
||||
}
|
||||
else
|
||||
#endif
|
||||
{
|
||||
a->SerialRAP(A);
|
||||
}
|
||||
}
|
||||
|
||||
void FABilinearFormExtension::EliminateBC(const Array<int> &ess_dofs,
|
||||
OperatorHandle &A)
|
||||
{
|
||||
MFEM_VERIFY(a->diag_policy == DiagonalPolicy::DIAG_ONE,
|
||||
"Only DiagonalPolicy::DIAG_ONE supported with"
|
||||
" FABilinearFormExtension.");
|
||||
#ifdef MFEM_USE_MPI
|
||||
if ( dynamic_cast<ParBilinearForm*>(a) )
|
||||
{
|
||||
A.As<HypreParMatrix>()->EliminateBC(ess_dofs,
|
||||
DiagonalPolicy::DIAG_ONE);
|
||||
}
|
||||
else
|
||||
#endif
|
||||
{
|
||||
A.As<SparseMatrix>()->EliminateBC(ess_dofs,
|
||||
DiagonalPolicy::DIAG_ONE);
|
||||
}
|
||||
}
|
||||
|
||||
void FABilinearFormExtension::FormSystemMatrix(const Array<int> &ess_dofs,
|
||||
OperatorHandle &A)
|
||||
{
|
||||
RAP(A);
|
||||
EliminateBC(ess_dofs, A);
|
||||
}
|
||||
|
||||
void FABilinearFormExtension::FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
Vector &x, Vector &b,
|
||||
OperatorHandle &A,
|
||||
Vector &X, Vector &B,
|
||||
int copy_interior)
|
||||
{
|
||||
Operator *A_out;
|
||||
Operator::FormLinearSystem(ess_tdof_list, x, b, A_out, X, B, copy_interior);
|
||||
delete A_out;
|
||||
FormSystemMatrix(ess_tdof_list, A);
|
||||
}
|
||||
|
||||
void FABilinearFormExtension::DGMult(const Vector &x, Vector &y) const
|
||||
{
|
||||
#ifdef MFEM_USE_MPI
|
||||
|
||||
@@ -125,6 +125,15 @@ public:
|
||||
FABilinearFormExtension(BilinearForm *form);
|
||||
|
||||
void Assemble();
|
||||
void RAP(OperatorHandle &A);
|
||||
/** @note Always does `DIAG_ONE` policy to be consistent with
|
||||
`Operator::FormConstrainedSystemOperator`. */
|
||||
void EliminateBC(const Array<int> &ess_dofs, OperatorHandle &A);
|
||||
void FormSystemMatrix(const Array<int> &ess_tdof_list, OperatorHandle &A);
|
||||
void FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
Vector &x, Vector &b,
|
||||
OperatorHandle &A, Vector &X, Vector &B,
|
||||
int copy_interior = 0);
|
||||
void Mult(const Vector &x, Vector &y) const;
|
||||
void MultTranspose(const Vector &x, Vector &y) const;
|
||||
|
||||
|
||||
+205
-2
@@ -2003,6 +2003,83 @@ void CurlCurlIntegrator::AssembleElementMatrix
|
||||
}
|
||||
}
|
||||
|
||||
void CurlCurlIntegrator::AssembleElementMatrix2(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat)
|
||||
{
|
||||
int tr_nd = trial_fe.GetDof();
|
||||
int te_nd = test_fe.GetDof();
|
||||
dim = trial_fe.GetDim();
|
||||
int dimc = trial_fe.GetCurlDim();
|
||||
double w;
|
||||
|
||||
#ifdef MFEM_THREAD_SAFE
|
||||
Vector D;
|
||||
DenseMatrix curlshape(tr_nd,dimc), curlshape_dFt(tr_nd,dimc), M;
|
||||
DenseMatrix te_curlshape(te_nd,dimc), te_curlshape_dFt(te_nd,dimc);
|
||||
#else
|
||||
curlshape.SetSize(tr_nd,dimc);
|
||||
curlshape_dFt.SetSize(tr_nd,dimc);
|
||||
te_curlshape.SetSize(te_nd,dimc);
|
||||
te_curlshape_dFt.SetSize(te_nd,dimc);
|
||||
#endif
|
||||
elmat.SetSize(te_nd, tr_nd);
|
||||
|
||||
if (MQ) { M.SetSize(dimc); }
|
||||
if (DQ) { D.SetSize(dimc); }
|
||||
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int order;
|
||||
if (trial_fe.Space() == FunctionSpace::Pk)
|
||||
{
|
||||
order = test_fe.GetOrder() + trial_fe.GetOrder() - 2;
|
||||
}
|
||||
else
|
||||
{
|
||||
order = test_fe.GetOrder() + trial_fe.GetOrder() + trial_fe.GetDim() - 1;
|
||||
}
|
||||
ir = &IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
|
||||
Trans.SetIntPoint(&ip);
|
||||
|
||||
w = ip.weight * Trans.Weight();
|
||||
trial_fe.CalcPhysCurlShape(Trans, curlshape_dFt);
|
||||
test_fe.CalcPhysCurlShape(Trans, te_curlshape_dFt);
|
||||
|
||||
if (MQ)
|
||||
{
|
||||
MQ->Eval(M, Trans, ip);
|
||||
M *= w;
|
||||
Mult(te_curlshape_dFt, M, te_curlshape);
|
||||
AddMultABt(te_curlshape, curlshape_dFt, elmat);
|
||||
}
|
||||
else if (DQ)
|
||||
{
|
||||
DQ->Eval(D, Trans, ip);
|
||||
D *= w;
|
||||
AddMultADBt(te_curlshape_dFt,D,curlshape_dFt,elmat);
|
||||
}
|
||||
else
|
||||
{
|
||||
if (Q)
|
||||
{
|
||||
w *= Q->Eval(Trans, ip);
|
||||
}
|
||||
curlshape_dFt *= w;
|
||||
AddMultABt(te_curlshape_dFt, curlshape_dFt, elmat);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void CurlCurlIntegrator
|
||||
::ComputeElementFlux(const FiniteElement &el, ElementTransformation &Trans,
|
||||
Vector &u, const FiniteElement &fluxelem, Vector &flux,
|
||||
@@ -2240,6 +2317,84 @@ double VectorCurlCurlIntegrator::GetElementEnergy(
|
||||
return 0.5 * energy;
|
||||
}
|
||||
|
||||
void MixedCurlIntegrator::AssembleElementMatrix2(
|
||||
const FiniteElement &trial_fe, const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans, DenseMatrix &elmat)
|
||||
{
|
||||
int dim = trial_fe.GetDim();
|
||||
int trial_dof = trial_fe.GetDof();
|
||||
int test_dof = test_fe.GetDof();
|
||||
int dimc = (dim == 3) ? 3 : 1;
|
||||
|
||||
MFEM_VERIFY(trial_fe.GetMapType() == mfem::FiniteElement::H_CURL ||
|
||||
(dim == 2 && trial_fe.GetMapType() == mfem::FiniteElement::VALUE),
|
||||
"Trial finite element must be either 2D/3D H(Curl) or 2D H1");
|
||||
MFEM_VERIFY(test_fe.GetMapType() == mfem::FiniteElement::VALUE ||
|
||||
test_fe.GetMapType() == mfem::FiniteElement::INTEGRAL,
|
||||
"Test finite element must be in H1/L2");
|
||||
|
||||
bool spaceH1 = (trial_fe.GetMapType() == mfem::FiniteElement::VALUE);
|
||||
|
||||
if (spaceH1)
|
||||
{
|
||||
dshape.SetSize(trial_dof,dim);
|
||||
curlshape.SetSize(dim*trial_dof,1);
|
||||
dimc = dim;
|
||||
}
|
||||
else
|
||||
{
|
||||
curlshape.SetSize(trial_dof,dimc);
|
||||
elmat_comp.SetSize(test_dof, trial_dof);
|
||||
}
|
||||
elmat.SetSize(dimc * test_dof, trial_dof);
|
||||
shape.SetSize(test_dof);
|
||||
elmat = 0.0;
|
||||
|
||||
double c;
|
||||
Vector d_col;
|
||||
const IntegrationRule *ir = IntRule;
|
||||
|
||||
if (ir == NULL)
|
||||
{
|
||||
int order = trial_fe.GetOrder() + test_fe.GetOrder() + Trans.OrderJ();
|
||||
ir = &IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
Trans.SetIntPoint(&ip);
|
||||
if (spaceH1)
|
||||
{
|
||||
trial_fe.CalcPhysDShape(Trans, dshape);
|
||||
dshape.GradToCurl(curlshape);
|
||||
}
|
||||
else
|
||||
{
|
||||
trial_fe.CalcPhysCurlShape(Trans, curlshape);
|
||||
}
|
||||
test_fe.CalcPhysShape(Trans, shape);
|
||||
c = ip.weight*Trans.Weight();
|
||||
if (Q)
|
||||
{
|
||||
c *= Q->Eval(Trans, ip);
|
||||
}
|
||||
shape *= c;
|
||||
|
||||
for (int d = 0; d < dimc; ++d)
|
||||
{
|
||||
double * curldata = &(curlshape.GetData())[d*trial_dof];
|
||||
for (int jj = 0; jj < trial_dof; ++jj)
|
||||
{
|
||||
for (int ii = 0; ii < test_dof; ++ii)
|
||||
{
|
||||
elmat(d * test_dof + ii, jj) += shape(ii) * curldata[jj];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void VectorFEMassIntegrator::AssembleElementMatrix(
|
||||
const FiniteElement &el,
|
||||
@@ -2586,6 +2741,54 @@ void DivDivIntegrator::AssembleElementMatrix(
|
||||
}
|
||||
}
|
||||
|
||||
void DivDivIntegrator::AssembleElementMatrix2(
|
||||
const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat)
|
||||
{
|
||||
int tr_nd = trial_fe.GetDof();
|
||||
int te_nd = test_fe.GetDof();
|
||||
double c;
|
||||
|
||||
#ifdef MFEM_THREAD_SAFE
|
||||
Vector divshape(tr_nd);
|
||||
Vector te_divshape(te_nd);
|
||||
#else
|
||||
divshape.SetSize(tr_nd);
|
||||
te_divshape.SetSize(te_nd);
|
||||
#endif
|
||||
elmat.SetSize(te_nd,tr_nd);
|
||||
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int order = 2 * max(test_fe.GetOrder(),
|
||||
trial_fe.GetOrder()) - 2; // <--- OK for RTk
|
||||
ir = &IntRules.Get(test_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
elmat = 0.0;
|
||||
|
||||
for (int i = 0; i < ir -> GetNPoints(); i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
|
||||
trial_fe.CalcDivShape(ip,divshape);
|
||||
test_fe.CalcDivShape(ip,te_divshape);
|
||||
|
||||
Trans.SetIntPoint (&ip);
|
||||
c = ip.weight / Trans.Weight();
|
||||
|
||||
if (Q)
|
||||
{
|
||||
c *= Q -> Eval (Trans, ip);
|
||||
}
|
||||
|
||||
te_divshape *= c;
|
||||
AddMultVWt(te_divshape, divshape, elmat);
|
||||
}
|
||||
}
|
||||
|
||||
void VectorDiffusionIntegrator::AssembleElementMatrix(
|
||||
const FiniteElement &el,
|
||||
@@ -3780,7 +3983,7 @@ void NormalTraceJumpIntegrator::AssembleFaceMatrix(
|
||||
for (i = 0; i < ndof1; i++)
|
||||
for (j = 0; j < face_ndof; j++)
|
||||
{
|
||||
elmat(i, j) -= shape1_n(i) * face_shape(j);
|
||||
elmat(i, j) += shape1_n(i) * face_shape(j);
|
||||
}
|
||||
if (ndof2)
|
||||
{
|
||||
@@ -3788,7 +3991,7 @@ void NormalTraceJumpIntegrator::AssembleFaceMatrix(
|
||||
for (i = 0; i < ndof2; i++)
|
||||
for (j = 0; j < face_ndof; j++)
|
||||
{
|
||||
elmat(ndof1+i, j) += shape2_n(i) * face_shape(j);
|
||||
elmat(ndof1+i, j) -= shape2_n(i) * face_shape(j);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
+45
-2
@@ -2174,6 +2174,7 @@ public:
|
||||
/** Class for local mass matrix assembling a(u,v) := (Q u, v) */
|
||||
class MassIntegrator: public BilinearFormIntegrator
|
||||
{
|
||||
friend class DGMassInverse;
|
||||
protected:
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
Vector shape, te_shape;
|
||||
@@ -2524,6 +2525,7 @@ private:
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
Vector D;
|
||||
DenseMatrix curlshape, curlshape_dFt, M;
|
||||
DenseMatrix te_curlshape, te_curlshape_dFt;
|
||||
DenseMatrix vshape, projcurl;
|
||||
#endif
|
||||
|
||||
@@ -2557,6 +2559,11 @@ public:
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
virtual void AssembleElementMatrix2(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
virtual void ComputeElementFlux(const FiniteElement &el,
|
||||
ElementTransformation &Trans,
|
||||
Vector &u, const FiniteElement &fluxelem,
|
||||
@@ -2602,6 +2609,35 @@ public:
|
||||
const Vector &elfun);
|
||||
};
|
||||
|
||||
/** Class for integrating the bilinear form a(u,v) := (Q curl u, v) where Q is
|
||||
an optional scalar coefficient, and v is a vector with components v_i in
|
||||
the L2 or H1 space. This integrator handles 3 cases:
|
||||
(a) u ∈ H(curl) in 3D, v is a 3D vector with components v_i in L^2 or H^1
|
||||
(b) u ∈ H(curl) in 2D, v is a scalar field in L^2 or H^1
|
||||
(c) u is a scalar field in H^1, i.e, curl u := [0 1;-1 0]grad u and v is a
|
||||
2D vector field with components v_i in L^2 or H^1 space.
|
||||
Note: Case (b) can also be handled by MixedScalarCurlIntegrator */
|
||||
class MixedCurlIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
|
||||
private:
|
||||
Vector shape;
|
||||
DenseMatrix dshape;
|
||||
DenseMatrix curlshape;
|
||||
DenseMatrix elmat_comp;
|
||||
public:
|
||||
MixedCurlIntegrator() : Q{NULL} { }
|
||||
MixedCurlIntegrator(Coefficient *q_) : Q{q_} { }
|
||||
MixedCurlIntegrator(Coefficient &q) : Q{&q} { }
|
||||
|
||||
virtual void AssembleElementMatrix2(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
};
|
||||
|
||||
/** Integrator for (Q u, v), where Q is an optional coefficient (of type scalar,
|
||||
vector (diagonal matrix), or matrix), trial function u is in H(Curl) or
|
||||
H(Div), and test function v is in H(Curl), H(Div), or v=(v1,...,vn), where
|
||||
@@ -2725,7 +2761,7 @@ protected:
|
||||
|
||||
private:
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
Vector divshape;
|
||||
Vector divshape, te_divshape;
|
||||
#endif
|
||||
|
||||
// PA extension
|
||||
@@ -2737,11 +2773,18 @@ private:
|
||||
|
||||
public:
|
||||
DivDivIntegrator() { Q = NULL; }
|
||||
DivDivIntegrator(Coefficient &q) : Q(&q) { }
|
||||
DivDivIntegrator(Coefficient &q, const IntegrationRule *ir = NULL) :
|
||||
BilinearFormIntegrator(ir), Q(&q) { }
|
||||
|
||||
virtual void AssembleElementMatrix(const FiniteElement &el,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
virtual void AssembleElementMatrix2(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
const Coefficient *GetCoefficient() const { return Q; }
|
||||
};
|
||||
|
||||
|
||||
@@ -30,7 +30,16 @@ void ConvectionIntegrator::AssembleMF(const FiniteElementSpace &fes)
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
delete ceedOp;
|
||||
ceedOp = new ceed::MFConvectionIntegrator(fes, *ir, Q, alpha);
|
||||
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
fes.IsVariableOrder();
|
||||
if (mixed)
|
||||
{
|
||||
ceedOp = new ceed::MixedMFConvectionIntegrator(*this, fes, Q, alpha);
|
||||
}
|
||||
else
|
||||
{
|
||||
ceedOp = new ceed::MFConvectionIntegrator(fes, *ir, Q, alpha);
|
||||
}
|
||||
return;
|
||||
}
|
||||
MFEM_ABORT("Error: ConvectionIntegrator::AssembleMF only implemented with"
|
||||
|
||||
@@ -12,6 +12,7 @@
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "qfunction.hpp"
|
||||
#include "ceed/integrators/convection/convection.hpp"
|
||||
#include "quadinterpolator.hpp"
|
||||
|
||||
@@ -1386,7 +1387,16 @@ void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
delete ceedOp;
|
||||
ceedOp = new ceed::PAConvectionIntegrator(fes, *ir, Q, alpha);
|
||||
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
fes.IsVariableOrder();
|
||||
if (mixed)
|
||||
{
|
||||
ceedOp = new ceed::MixedPAConvectionIntegrator(*this, fes, Q, alpha);
|
||||
}
|
||||
else
|
||||
{
|
||||
ceedOp = new ceed::PAConvectionIntegrator(fes, *ir, Q, alpha);
|
||||
}
|
||||
return;
|
||||
}
|
||||
const int dims = el.GetDim();
|
||||
@@ -1399,66 +1409,10 @@ void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
dofs1D = maps->ndof;
|
||||
quad1D = maps->nqpt;
|
||||
pa_data.SetSize(symmDims * nq * ne, mt);
|
||||
Vector vel;
|
||||
if (VectorConstantCoefficient *cQ =
|
||||
dynamic_cast<VectorConstantCoefficient*>(Q))
|
||||
{
|
||||
vel = cQ->GetVec();
|
||||
}
|
||||
else if (VectorGridFunctionCoefficient *vgfQ =
|
||||
dynamic_cast<VectorGridFunctionCoefficient*>(Q))
|
||||
{
|
||||
vel.SetSize(dim * nq * ne, mt);
|
||||
|
||||
const GridFunction *gf = vgfQ->GetGridFunction();
|
||||
const FiniteElementSpace &gf_fes = *gf->FESpace();
|
||||
const QuadratureInterpolator *qi(gf_fes.GetQuadratureInterpolator(*ir));
|
||||
const bool use_tensor_products = UsesTensorBasis(gf_fes);
|
||||
const ElementDofOrdering ordering = use_tensor_products ?
|
||||
ElementDofOrdering::LEXICOGRAPHIC :
|
||||
ElementDofOrdering::NATIVE;
|
||||
const Operator *R = gf_fes.GetElementRestriction(ordering);
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector vel(*Q, qs, CoefficientStorage::COMPRESSED);
|
||||
|
||||
Vector xe(R->Height(), mt);
|
||||
xe.UseDevice(true);
|
||||
|
||||
R->Mult(*gf, xe);
|
||||
qi->SetOutputLayout(QVectorLayout::byVDIM);
|
||||
qi->DisableTensorProducts(!use_tensor_products);
|
||||
qi->Values(xe,vel);
|
||||
}
|
||||
else if (VectorQuadratureFunctionCoefficient* vqfQ =
|
||||
dynamic_cast<VectorQuadratureFunctionCoefficient*>(Q))
|
||||
{
|
||||
const QuadratureFunction &qFun = vqfQ->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == dim * nq * ne,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
|
||||
qFun.Read();
|
||||
vel.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
|
||||
}
|
||||
else
|
||||
{
|
||||
vel.SetSize(dim * nq * ne);
|
||||
auto C = Reshape(vel.HostWrite(), dim, nq, ne);
|
||||
DenseMatrix MQ_ir;
|
||||
for (int e = 0; e < ne; ++e)
|
||||
{
|
||||
ElementTransformation& T = *fes.GetElementTransformation(e);
|
||||
Q->Eval(MQ_ir, T, *ir);
|
||||
for (int q = 0; q < nq; ++q)
|
||||
{
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
C(i,q,e) = MQ_ir(i,q);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
PAConvectionSetup(dim, nq, ne, ir->GetWeights(), geom->J,
|
||||
vel, alpha, pa_data);
|
||||
}
|
||||
@@ -1497,6 +1451,7 @@ static void PAConvectionApply(const int dim,
|
||||
{
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x22: return SmemPAConvectionApply3D<2,2>(NE,B,G,Bt,Gt,op,x,y);
|
||||
case 0x23: return SmemPAConvectionApply3D<2,3>(NE,B,G,Bt,Gt,op,x,y);
|
||||
case 0x24: return SmemPAConvectionApply3D<2,4>(NE,B,G,Bt,Gt,op,x,y);
|
||||
case 0x26: return SmemPAConvectionApply3D<2,6>(NE,B,G,Bt,Gt,op,x,y);
|
||||
@@ -1548,6 +1503,7 @@ static void PAConvectionApplyT(const int dim,
|
||||
{
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x22: return SmemPAConvectionApplyT3D<2,2>(NE,B,G,Bt,Gt,op,x,y);
|
||||
case 0x23: return SmemPAConvectionApplyT3D<2,3>(NE,B,G,Bt,Gt,op,x,y);
|
||||
case 0x24: return SmemPAConvectionApplyT3D<2,4>(NE,B,G,Bt,Gt,op,x,y);
|
||||
case 0x26: return SmemPAConvectionApplyT3D<2,6>(NE,B,G,Bt,Gt,op,x,y);
|
||||
|
||||
+44
-105
@@ -12,6 +12,7 @@
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "qfunction.hpp"
|
||||
#include "restriction.hpp"
|
||||
|
||||
using namespace std;
|
||||
@@ -136,6 +137,9 @@ static void PADGTraceSetup(const int dim,
|
||||
|
||||
void DGTraceIntegrator::SetupPA(const FiniteElementSpace &fes, FaceType type)
|
||||
{
|
||||
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
|
||||
Device::GetDeviceMemoryType() : pa_mt;
|
||||
|
||||
nf = fes.GetNFbyType(type);
|
||||
if (nf==0) { return; }
|
||||
// Assumes tensor-product elements
|
||||
@@ -153,93 +157,29 @@ void DGTraceIntegrator::SetupPA(const FiniteElementSpace &fes, FaceType type)
|
||||
geom = mesh->GetFaceGeometricFactors(
|
||||
*ir,
|
||||
FaceGeometricFactors::DETERMINANTS |
|
||||
FaceGeometricFactors::NORMALS, type);
|
||||
FaceGeometricFactors::NORMALS, type, mt);
|
||||
maps = &el.GetDofToQuad(*ir, DofToQuad::TENSOR);
|
||||
dofs1D = maps->ndof;
|
||||
quad1D = maps->nqpt;
|
||||
pa_data.SetSize(symmDims * nq * nf, Device::GetMemoryType());
|
||||
Vector vel;
|
||||
if (VectorConstantCoefficient *c_u = dynamic_cast<VectorConstantCoefficient*>
|
||||
(u))
|
||||
{
|
||||
vel = c_u->GetVec();
|
||||
}
|
||||
else if (VectorQuadratureFunctionCoefficient* qf_u =
|
||||
dynamic_cast<VectorQuadratureFunctionCoefficient*>(u))
|
||||
{
|
||||
// Assumed to be in lexicographical ordering
|
||||
const QuadratureFunction &qFun = qf_u->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == dim * nq * nf,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
qFun.Read();
|
||||
vel.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
|
||||
}
|
||||
else
|
||||
FaceQuadratureSpace qs(*mesh, *ir, type);
|
||||
CoefficientVector vel(*u, qs, CoefficientStorage::COMPRESSED);
|
||||
|
||||
CoefficientVector r(qs, CoefficientStorage::COMPRESSED);
|
||||
if (rho == nullptr)
|
||||
{
|
||||
vel.SetSize(dim * nq * nf);
|
||||
auto C = Reshape(vel.HostWrite(), dim, nq, nf);
|
||||
Vector Vq(dim);
|
||||
int f_ind = 0;
|
||||
for (int f = 0; f < mesh->GetNumFacesWithGhost(); ++f)
|
||||
{
|
||||
Mesh::FaceInformation face = mesh->GetFaceInformation(f);
|
||||
if (face.IsNonconformingCoarse())
|
||||
{
|
||||
// We skip nonconforming coarse faces as they are treated
|
||||
// by the corresponding nonconforming fine faces.
|
||||
continue;
|
||||
}
|
||||
else if ( face.IsOfFaceType(type) )
|
||||
{
|
||||
const int mask = FaceElementTransformations::HAVE_ELEM1 |
|
||||
FaceElementTransformations::HAVE_LOC1;
|
||||
FaceElementTransformations &T =
|
||||
*fes.GetMesh()->GetFaceElementTransformations(f, mask);
|
||||
for (int q = 0; q < nq; ++q)
|
||||
{
|
||||
// Convert to lexicographic ordering
|
||||
int iq = ToLexOrdering(dim, face.element[0].local_face_id,
|
||||
quad1D, q);
|
||||
T.SetAllIntPoints(&ir->IntPoint(q));
|
||||
const IntegrationPoint &eip1 = T.GetElement1IntPoint();
|
||||
u->Eval(Vq, *T.Elem1, eip1);
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
C(i,iq,f_ind) = Vq(i);
|
||||
}
|
||||
}
|
||||
f_ind++;
|
||||
}
|
||||
}
|
||||
MFEM_VERIFY(f_ind==nf, "Incorrect number of faces.");
|
||||
r.SetConstant(1.0);
|
||||
}
|
||||
Vector r;
|
||||
if (rho==nullptr)
|
||||
else if (ConstantCoefficient *const_rho = dynamic_cast<ConstantCoefficient*>
|
||||
(rho))
|
||||
{
|
||||
r.SetSize(1);
|
||||
r(0) = 1.0;
|
||||
}
|
||||
else if (ConstantCoefficient *c_rho = dynamic_cast<ConstantCoefficient*>(rho))
|
||||
{
|
||||
r.SetSize(1);
|
||||
r(0) = c_rho->constant;
|
||||
r.SetConstant(const_rho->constant);
|
||||
}
|
||||
else if (QuadratureFunctionCoefficient* qf_rho =
|
||||
dynamic_cast<QuadratureFunctionCoefficient*>(rho))
|
||||
{
|
||||
const QuadratureFunction &qFun = qf_rho->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == nq * nf,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
qFun.Read();
|
||||
r.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
|
||||
r.MakeRef(qf_rho->GetQuadFunction());
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -251,45 +191,42 @@ void DGTraceIntegrator::SetupPA(const FiniteElementSpace &fes, FaceType type)
|
||||
for (int f = 0; f < mesh->GetNumFacesWithGhost(); ++f)
|
||||
{
|
||||
Mesh::FaceInformation face = mesh->GetFaceInformation(f);
|
||||
if (face.IsNonconformingCoarse())
|
||||
if (face.IsNonconformingCoarse() || !face.IsOfFaceType(type))
|
||||
{
|
||||
// We skip nonconforming coarse faces as they are treated
|
||||
// by the corresponding nonconforming fine faces.
|
||||
continue;
|
||||
}
|
||||
else if ( face.IsOfFaceType(type) )
|
||||
FaceElementTransformations &T =
|
||||
*fes.GetMesh()->GetFaceElementTransformations(f);
|
||||
for (int q = 0; q < nq; ++q)
|
||||
{
|
||||
FaceElementTransformations &T =
|
||||
*fes.GetMesh()->GetFaceElementTransformations(f);
|
||||
for (int q = 0; q < nq; ++q)
|
||||
// Convert to lexicographic ordering
|
||||
int iq = ToLexOrdering(dim, face.element[0].local_face_id,
|
||||
quad1D, q);
|
||||
|
||||
T.SetAllIntPoints(&ir->IntPoint(q));
|
||||
const IntegrationPoint &eip1 = T.GetElement1IntPoint();
|
||||
const IntegrationPoint &eip2 = T.GetElement2IntPoint();
|
||||
double rq;
|
||||
|
||||
if (face.IsBoundary())
|
||||
{
|
||||
// Convert to lexicographic ordering
|
||||
int iq = ToLexOrdering(dim, face.element[0].local_face_id,
|
||||
quad1D, q);
|
||||
|
||||
T.SetAllIntPoints(&ir->IntPoint(q));
|
||||
const IntegrationPoint &eip1 = T.GetElement1IntPoint();
|
||||
const IntegrationPoint &eip2 = T.GetElement2IntPoint();
|
||||
double rq;
|
||||
|
||||
if ( face.IsBoundary() )
|
||||
{
|
||||
rq = rho->Eval(*T.Elem1, eip1);
|
||||
}
|
||||
else
|
||||
{
|
||||
double udotn = 0.0;
|
||||
for (int d=0; d<dim; ++d)
|
||||
{
|
||||
udotn += C_vel(d,iq,f_ind)*n(iq,d,f_ind);
|
||||
}
|
||||
if (udotn >= 0.0) { rq = rho->Eval(*T.Elem2, eip2); }
|
||||
else { rq = rho->Eval(*T.Elem1, eip1); }
|
||||
}
|
||||
C(iq,f_ind) = rq;
|
||||
rq = rho->Eval(*T.Elem1, eip1);
|
||||
}
|
||||
f_ind++;
|
||||
else
|
||||
{
|
||||
double udotn = 0.0;
|
||||
for (int d=0; d<dim; ++d)
|
||||
{
|
||||
udotn += C_vel(d,iq,f_ind)*n(iq,d,f_ind);
|
||||
}
|
||||
if (udotn >= 0.0) { rq = rho->Eval(*T.Elem2, eip2); }
|
||||
else { rq = rho->Eval(*T.Elem1, eip1); }
|
||||
}
|
||||
C(iq,f_ind) = rq;
|
||||
}
|
||||
f_ind++;
|
||||
}
|
||||
MFEM_VERIFY(f_ind==nf, "Incorrect number of faces.");
|
||||
}
|
||||
@@ -695,6 +632,7 @@ static void PADGTraceApply(const int dim,
|
||||
{
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x22: return SmemPADGTraceApply3D<2,2,1>(NF,B,Bt,op,x,y);
|
||||
case 0x23: return SmemPADGTraceApply3D<2,3,1>(NF,B,Bt,op,x,y);
|
||||
case 0x34: return SmemPADGTraceApply3D<3,4,2>(NF,B,Bt,op,x,y);
|
||||
case 0x45: return SmemPADGTraceApply3D<4,5,2>(NF,B,Bt,op,x,y);
|
||||
@@ -1124,6 +1062,7 @@ static void PADGTraceApplyTranspose(const int dim,
|
||||
{
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x22: return SmemPADGTraceApplyTranspose3D<2,2>(NF,B,Bt,op,x,y);
|
||||
case 0x23: return SmemPADGTraceApplyTranspose3D<2,3>(NF,B,Bt,op,x,y);
|
||||
case 0x34: return SmemPADGTraceApplyTranspose3D<3,4>(NF,B,Bt,op,x,y);
|
||||
case 0x45: return SmemPADGTraceApplyTranspose3D<4,5>(NF,B,Bt,op,x,y);
|
||||
|
||||
@@ -33,7 +33,16 @@ void DiffusionIntegrator::AssembleMF(const FiniteElementSpace &fes)
|
||||
MFEM_VERIFY(!VQ && !MQ,
|
||||
"Only scalar coefficient supported for DiffusionIntegrator"
|
||||
" with libCEED");
|
||||
ceedOp = new ceed::MFDiffusionIntegrator(fes, *ir, Q);
|
||||
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
fes.IsVariableOrder();
|
||||
if (mixed)
|
||||
{
|
||||
ceedOp = new ceed::MixedMFDiffusionIntegrator(*this, fes, Q);
|
||||
}
|
||||
else
|
||||
{
|
||||
ceedOp = new ceed::MFDiffusionIntegrator(fes, *ir, Q);
|
||||
}
|
||||
return;
|
||||
}
|
||||
MFEM_ABORT("Error: DiffusionIntegrator::AssembleMF only implemented with"
|
||||
|
||||
+28
-114
@@ -12,6 +12,7 @@
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "qfunction.hpp"
|
||||
#include "ceed/integrators/diffusion/diffusion.hpp"
|
||||
|
||||
using namespace std;
|
||||
@@ -271,18 +272,21 @@ void PADiffusionSetup3D(const int Q1D,
|
||||
D(qx,qy,qz,1,e) = D12; // 1,2
|
||||
D(qx,qy,qz,2,e) = w_detJ * (A11*R13 + A12*R23 + A13*R33); // 1,3
|
||||
|
||||
const double D21 = w_detJ * (A21*R11 + A22*R21 + A23*R31);
|
||||
const double D22 = w_detJ * (A21*R12 + A22*R22 + A23*R32);
|
||||
const double D23 = w_detJ * (A21*R13 + A22*R23 + A23*R33);
|
||||
|
||||
const double D33 = w_detJ * (A31*R13 + A32*R23 + A33*R33);
|
||||
|
||||
D(qx,qy,qz,3,e) = symmetric ? D22 : D21; // 2,2 or 2,1
|
||||
D(qx,qy,qz,4,e) = symmetric ? D23 : D22; // 2,3 or 2,2
|
||||
D(qx,qy,qz,5,e) = symmetric ? D33 : D23; // 3,3 or 2,3
|
||||
|
||||
if (!symmetric)
|
||||
if (symmetric)
|
||||
{
|
||||
D(qx,qy,qz,3,e) = D22; // 2,2
|
||||
}
|
||||
else
|
||||
{
|
||||
D(qx,qy,qz,3,e) = w_detJ * (A21*R11 + A22*R21 + A23*R31); // 2,1
|
||||
D(qx,qy,qz,6,e) = w_detJ * (A31*R11 + A32*R21 + A33*R31); // 3,1
|
||||
D(qx,qy,qz,7,e) = w_detJ * (A31*R12 + A32*R22 + A33*R32); // 3,2
|
||||
D(qx,qy,qz,8,e) = D33; // 3,3
|
||||
@@ -365,7 +369,16 @@ void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
MFEM_VERIFY(!VQ && !MQ,
|
||||
"Only scalar coefficient supported for DiffusionIntegrator"
|
||||
" with libCEED");
|
||||
ceedOp = new ceed::PADiffusionIntegrator(fes, *ir, Q);
|
||||
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
fes.IsVariableOrder();
|
||||
if (mixed)
|
||||
{
|
||||
ceedOp = new ceed::MixedPADiffusionIntegrator(*this, fes, Q);
|
||||
}
|
||||
else
|
||||
{
|
||||
ceedOp = new ceed::PADiffusionIntegrator(fes, *ir, Q);
|
||||
}
|
||||
return;
|
||||
}
|
||||
const int dims = el.GetDim();
|
||||
@@ -378,120 +391,21 @@ void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
maps = &el.GetDofToQuad(*ir, DofToQuad::TENSOR);
|
||||
dofs1D = maps->ndof;
|
||||
quad1D = maps->nqpt;
|
||||
int coeffDim = 1;
|
||||
Vector coeff;
|
||||
const int MQfullDim = MQ ? MQ->GetHeight() * MQ->GetWidth() : 0;
|
||||
if (auto *SMQ = dynamic_cast<SymmetricMatrixCoefficient *>(MQ))
|
||||
{
|
||||
MFEM_VERIFY(SMQ->GetSize() == dim, "");
|
||||
coeffDim = symmDims;
|
||||
coeff.SetSize(symmDims * nq * ne);
|
||||
|
||||
DenseSymmetricMatrix sym_mat;
|
||||
sym_mat.SetSize(dim);
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(qs, CoefficientStorage::COMPRESSED);
|
||||
|
||||
auto C = Reshape(coeff.HostWrite(), symmDims, nq, ne);
|
||||
if (MQ) { coeff.ProjectTranspose(*MQ); }
|
||||
else if (VQ) { coeff.Project(*VQ); }
|
||||
else if (Q) { coeff.Project(*Q); }
|
||||
else { coeff.SetConstant(1.0); }
|
||||
|
||||
for (int e=0; e<ne; ++e)
|
||||
{
|
||||
ElementTransformation *tr = mesh->GetElementTransformation(e);
|
||||
for (int p=0; p<nq; ++p)
|
||||
{
|
||||
SMQ->Eval(sym_mat, *tr, ir->IntPoint(p));
|
||||
int cnt = 0;
|
||||
for (int i=0; i<dim; ++i)
|
||||
for (int j=i; j<dim; ++j, ++cnt)
|
||||
{
|
||||
C(cnt, p, e) = sym_mat(i,j);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (MQ)
|
||||
{
|
||||
symmetric = false;
|
||||
MFEM_VERIFY(MQ->GetHeight() == dim && MQ->GetWidth() == dim, "");
|
||||
const int coeff_dim = coeff.GetVDim();
|
||||
symmetric = (coeff_dim != dims*dims);
|
||||
const int pa_size = symmetric ? symmDims : dims*dims;
|
||||
|
||||
coeffDim = MQfullDim;
|
||||
|
||||
coeff.SetSize(MQfullDim * nq * ne);
|
||||
|
||||
DenseMatrix mat;
|
||||
mat.SetSize(dim);
|
||||
|
||||
auto C = Reshape(coeff.HostWrite(), MQfullDim, nq, ne);
|
||||
for (int e=0; e<ne; ++e)
|
||||
{
|
||||
ElementTransformation *tr = mesh->GetElementTransformation(e);
|
||||
for (int p=0; p<nq; ++p)
|
||||
{
|
||||
MQ->Eval(mat, *tr, ir->IntPoint(p));
|
||||
for (int i=0; i<dim; ++i)
|
||||
for (int j=0; j<dim; ++j)
|
||||
{
|
||||
C(j+(i*dim), p, e) = mat(i,j);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (VQ)
|
||||
{
|
||||
MFEM_VERIFY(VQ->GetVDim() == dim, "");
|
||||
coeffDim = VQ->GetVDim();
|
||||
coeff.SetSize(coeffDim * nq * ne);
|
||||
auto C = Reshape(coeff.HostWrite(), coeffDim, nq, ne);
|
||||
Vector DM(coeffDim);
|
||||
for (int e=0; e<ne; ++e)
|
||||
{
|
||||
ElementTransformation *tr = mesh->GetElementTransformation(e);
|
||||
for (int p=0; p<nq; ++p)
|
||||
{
|
||||
VQ->Eval(DM, *tr, ir->IntPoint(p));
|
||||
for (int i=0; i<coeffDim; ++i)
|
||||
{
|
||||
C(i, p, e) = DM[i];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (Q == nullptr)
|
||||
{
|
||||
coeff.SetSize(1);
|
||||
coeff(0) = 1.0;
|
||||
}
|
||||
else if (ConstantCoefficient* cQ = dynamic_cast<ConstantCoefficient*>(Q))
|
||||
{
|
||||
coeff.SetSize(1);
|
||||
coeff(0) = cQ->constant;
|
||||
}
|
||||
else if (QuadratureFunctionCoefficient* qfQ =
|
||||
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
|
||||
{
|
||||
const QuadratureFunction &qFun = qfQ->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == ne*nq,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
qFun.Read();
|
||||
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
|
||||
}
|
||||
else
|
||||
{
|
||||
coeff.SetSize(nq * ne);
|
||||
auto C = Reshape(coeff.HostWrite(), nq, ne);
|
||||
for (int e = 0; e < ne; ++e)
|
||||
{
|
||||
ElementTransformation& T = *fes.GetElementTransformation(e);
|
||||
for (int q = 0; q < nq; ++q)
|
||||
{
|
||||
C(q,e) = Q->Eval(T, ir->IntPoint(q));
|
||||
}
|
||||
}
|
||||
}
|
||||
pa_data.SetSize((symmetric ? symmDims : MQfullDim) * nq * ne, mt);
|
||||
PADiffusionSetup(dim, sdim, dofs1D, quad1D, coeffDim, ne, ir->GetWeights(),
|
||||
pa_data.SetSize(pa_size * nq * ne, mt);
|
||||
PADiffusionSetup(dim, sdim, dofs1D, quad1D, coeff_dim, ne, ir->GetWeights(),
|
||||
geom->J, coeff, pa_data);
|
||||
}
|
||||
|
||||
|
||||
@@ -12,6 +12,7 @@
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "qfunction.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
@@ -209,44 +210,8 @@ void GradientIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
|
||||
"PA requires test and trial space to have same number of quadrature points!");
|
||||
pa_data.SetSize(nq * dimsToStore * ne, Device::GetMemoryType());
|
||||
|
||||
Vector coeff;
|
||||
|
||||
if (Q == nullptr)
|
||||
{
|
||||
coeff.SetSize(1);
|
||||
coeff(0) = 1.0;
|
||||
}
|
||||
else if (ConstantCoefficient* cQ = dynamic_cast<ConstantCoefficient*>(Q))
|
||||
{
|
||||
coeff.SetSize(1);
|
||||
coeff(0) = cQ->constant;
|
||||
}
|
||||
else if (QuadratureFunctionCoefficient* qfQ =
|
||||
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
|
||||
{
|
||||
const QuadratureFunction &qFun = qfQ->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == ne*nq,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
qFun.Read();
|
||||
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
|
||||
}
|
||||
else
|
||||
{
|
||||
coeff.SetSize(nq * ne);
|
||||
auto C = Reshape(coeff.HostWrite(), nq, ne);
|
||||
for (int e = 0; e < ne; ++e)
|
||||
{
|
||||
ElementTransformation& T = *trial_fes.GetElementTransformation(e);
|
||||
for (int q = 0; q < nq; ++q)
|
||||
{
|
||||
C(q,e) = Q->Eval(T, ir->IntPoint(q));
|
||||
}
|
||||
}
|
||||
}
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
|
||||
|
||||
PAGradientSetup(dim, trial_dofs1D, test_dofs1D, quad1D,
|
||||
ne, ir->GetWeights(), geom->J, coeff, pa_data);
|
||||
@@ -865,4 +830,3 @@ void GradientIntegrator::AddMultTransposePA(const Vector &x, Vector &y) const
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
|
||||
+24
-160
@@ -12,6 +12,7 @@
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "qspace.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
@@ -967,8 +968,6 @@ void CurlCurlIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
dim = mesh->Dimension();
|
||||
MFEM_VERIFY(dim == 2 || dim == 3, "");
|
||||
|
||||
const int dimc = (dim == 3) ? 3 : 1;
|
||||
|
||||
ne = fes.GetNE();
|
||||
geom = mesh->GetGeometricFactors(*ir, GeometricFactors::JACOBIANS);
|
||||
mapsC = &el->GetDofToQuad(*ir, DofToQuad::TENSOR);
|
||||
@@ -978,88 +977,19 @@ void CurlCurlIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
|
||||
MFEM_VERIFY(dofs1D == mapsO->ndof + 1 && quad1D == mapsO->nqpt, "");
|
||||
|
||||
auto SMQ = dynamic_cast<SymmetricMatrixCoefficient *>(MQ);
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(qs, CoefficientStorage::SYMMETRIC);
|
||||
if (Q) { coeff.Project(*Q); }
|
||||
else if (MQ) { coeff.ProjectTranspose(*MQ); }
|
||||
else if (DQ) { coeff.Project(*DQ); }
|
||||
else { coeff.SetConstant(1.0); }
|
||||
|
||||
const int MQsymmDim = SMQ ? (SMQ->GetSize() * (SMQ->GetSize() + 1)) / 2 : 0;
|
||||
const int MQfullDim = MQ ? (MQ->GetHeight() * MQ->GetWidth()) : 0;
|
||||
const int MQdim = SMQ ? MQsymmDim : MQfullDim;
|
||||
const int coeffDim = MQ ? MQdim : (DQ ? DQ->GetVDim() : 1);
|
||||
|
||||
symmetric = (SMQ || MQ == NULL);
|
||||
|
||||
const int symmDims = (dims * (dims + 1)) / 2; // 1x1: 1, 2x2: 3, 3x3: 6
|
||||
const int ndata = (dim == 2) ? 1 : (symmetric ? symmDims : MQfullDim);
|
||||
const int coeff_dim = coeff.GetVDim();
|
||||
symmetric = (coeff_dim != dim*dim);
|
||||
const int sym_dims = (dims * (dims + 1)) / 2; // 1x1: 1, 2x2: 3, 3x3: 6
|
||||
const int ndata = (dim == 2) ? 1 : (symmetric ? sym_dims : dim*dim);
|
||||
pa_data.SetSize(ndata * nq * ne, Device::GetMemoryType());
|
||||
|
||||
Vector coeff(coeffDim * ne * nq);
|
||||
coeff = 1.0;
|
||||
auto coeffh = Reshape(coeff.HostWrite(), coeffDim, nq, ne);
|
||||
if (Q || DQ || MQ)
|
||||
{
|
||||
Vector DM(DQ ? coeffDim : 0);
|
||||
DenseMatrix GM;
|
||||
DenseSymmetricMatrix SM;
|
||||
|
||||
if (DQ)
|
||||
{
|
||||
MFEM_VERIFY(coeffDim == dimc, "");
|
||||
}
|
||||
if (SMQ)
|
||||
{
|
||||
SM.SetSize(dimc);
|
||||
MFEM_VERIFY(SMQ->GetSize() == dimc, "");
|
||||
}
|
||||
else if (MQ)
|
||||
{
|
||||
GM.SetSize(dimc);
|
||||
MFEM_VERIFY(coeffDim == MQdim, "");
|
||||
MFEM_VERIFY(MQ->GetHeight() == dimc && MQ->GetWidth() == dimc, "");
|
||||
}
|
||||
|
||||
for (int e=0; e<ne; ++e)
|
||||
{
|
||||
ElementTransformation *tr = mesh->GetElementTransformation(e);
|
||||
for (int p=0; p<nq; ++p)
|
||||
{
|
||||
if (SMQ)
|
||||
{
|
||||
SMQ->Eval(SM, *tr, ir->IntPoint(p));
|
||||
|
||||
int cnt = 0;
|
||||
for (int i=0; i<dimc; ++i)
|
||||
for (int j=i; j<dimc; ++j, ++cnt)
|
||||
{
|
||||
coeffh(cnt, p, e) = SM(i,j);
|
||||
}
|
||||
|
||||
}
|
||||
else if (MQ)
|
||||
{
|
||||
MQ->Eval(GM, *tr, ir->IntPoint(p));
|
||||
|
||||
for (int i=0; i<dimc; ++i)
|
||||
for (int j=0; j<dimc; ++j)
|
||||
{
|
||||
coeffh(j+(i*dimc), p, e) = GM(i,j);
|
||||
}
|
||||
|
||||
}
|
||||
else if (DQ)
|
||||
{
|
||||
DQ->Eval(DM, *tr, ir->IntPoint(p));
|
||||
for (int i=0; i<coeffDim; ++i)
|
||||
{
|
||||
coeffh(i, p, e) = DM[i];
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
coeffh(0, p, e) = Q->Eval(*tr, ir->IntPoint(p));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (el->GetDerivType() != mfem::FiniteElement::CURL)
|
||||
{
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
@@ -1067,7 +997,7 @@ void CurlCurlIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
|
||||
if (dim == 3)
|
||||
{
|
||||
PACurlCurlSetup3D(quad1D, coeffDim, ne, ir->GetWeights(), geom->J, coeff,
|
||||
PACurlCurlSetup3D(quad1D, coeff_dim, ne, ir->GetWeights(), geom->J, coeff,
|
||||
pa_data);
|
||||
}
|
||||
else
|
||||
@@ -3489,20 +3419,8 @@ void MixedScalarCurlIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
|
||||
|
||||
pa_data.SetSize(nq * ne, Device::GetMemoryType());
|
||||
|
||||
Vector coeff(ne * nq);
|
||||
coeff = 1.0;
|
||||
auto coeffh = Reshape(coeff.HostWrite(), nq, ne);
|
||||
if (Q)
|
||||
{
|
||||
for (int e=0; e<ne; ++e)
|
||||
{
|
||||
ElementTransformation *tr = mesh->GetElementTransformation(e);
|
||||
for (int p=0; p<nq; ++p)
|
||||
{
|
||||
coeffh(p, e) = Q->Eval(*tr, ir->IntPoint(p));
|
||||
}
|
||||
}
|
||||
}
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(Q, qs, CoefficientStorage::FULL);
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
@@ -3593,38 +3511,11 @@ void MixedVectorCurlIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
|
||||
const int ndata = curlSpaces ? (coeffDim == 1 ? 1 : 9) : symmDims;
|
||||
pa_data.SetSize(ndata * nq * ne, Device::GetMemoryType());
|
||||
|
||||
Vector coeff(coeffDim * nq * ne);
|
||||
coeff = 1.0;
|
||||
auto coeffh = Reshape(coeff.HostWrite(), coeffDim, nq, ne);
|
||||
if (Q || DQ)
|
||||
{
|
||||
Vector V(coeffDim);
|
||||
if (DQ)
|
||||
{
|
||||
MFEM_VERIFY(DQ->GetVDim() == coeffDim, "");
|
||||
}
|
||||
|
||||
for (int e=0; e<ne; ++e)
|
||||
{
|
||||
ElementTransformation *tr = mesh->GetElementTransformation(e);
|
||||
|
||||
for (int p=0; p<nq; ++p)
|
||||
{
|
||||
if (DQ)
|
||||
{
|
||||
DQ->Eval(V, *tr, ir->IntPoint(p));
|
||||
for (int i=0; i<coeffDim; ++i)
|
||||
{
|
||||
coeffh(i, p, e) = V[i];
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
coeffh(0, p, e) = Q->Eval(*tr, ir->IntPoint(p));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(qs, CoefficientStorage::FULL);
|
||||
if (Q) { coeff.Project(*Q); }
|
||||
else if (DQ) { coeff.Project(*DQ); }
|
||||
else { coeff.SetConstant(1.0); }
|
||||
|
||||
if (testType == mfem::FiniteElement::CURL &&
|
||||
trialType == mfem::FiniteElement::CURL && dim == 3)
|
||||
@@ -5146,38 +5037,11 @@ void MixedVectorWeakCurlIntegrator::AssemblePA(const FiniteElementSpace
|
||||
|
||||
pa_data.SetSize(ndata * nq * ne, Device::GetMemoryType());
|
||||
|
||||
Vector coeff(coeffDim * nq * ne);
|
||||
coeff = 1.0;
|
||||
auto coeffh = Reshape(coeff.HostWrite(), coeffDim, nq, ne);
|
||||
if (Q || DQ)
|
||||
{
|
||||
Vector V(coeffDim);
|
||||
if (DQ)
|
||||
{
|
||||
MFEM_VERIFY(DQ->GetVDim() == coeffDim, "");
|
||||
}
|
||||
|
||||
for (int e=0; e<ne; ++e)
|
||||
{
|
||||
ElementTransformation *tr = mesh->GetElementTransformation(e);
|
||||
|
||||
for (int p=0; p<nq; ++p)
|
||||
{
|
||||
if (DQ)
|
||||
{
|
||||
DQ->Eval(V, *tr, ir->IntPoint(p));
|
||||
for (int i=0; i<coeffDim; ++i)
|
||||
{
|
||||
coeffh(i, p, e) = V[i];
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
coeffh(0, p, e) = Q->Eval(*tr, ir->IntPoint(p));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(qs, CoefficientStorage::FULL);
|
||||
if (Q) { coeff.Project(*Q); }
|
||||
else if (DQ) { coeff.Project(*DQ); }
|
||||
else { coeff.SetConstant(1.0); }
|
||||
|
||||
if (trialType == mfem::FiniteElement::CURL && dim == 3)
|
||||
{
|
||||
|
||||
+629
-55
@@ -12,6 +12,7 @@
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "qspace.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
@@ -24,18 +25,20 @@ namespace mfem
|
||||
|
||||
// PA H(div) Mass Assemble 2D kernel
|
||||
void PAHdivSetup2D(const int Q1D,
|
||||
const int coeffDim,
|
||||
const int NE,
|
||||
const Array<double> &w,
|
||||
const Vector &j,
|
||||
Vector &coeff_,
|
||||
Vector &op)
|
||||
{
|
||||
const bool symmetric = (coeffDim != 4);
|
||||
const int NQ = Q1D*Q1D;
|
||||
auto W = w.Read();
|
||||
|
||||
auto J = Reshape(j.Read(), NQ, 2, 2, NE);
|
||||
auto coeff = Reshape(coeff_.Read(), NQ, NE);
|
||||
auto y = Reshape(op.Write(), NQ, 3, NE);
|
||||
auto C = Reshape(coeff_.Read(), coeffDim, NQ, NE);
|
||||
auto y = Reshape(op.Write(), NQ, symmetric ? 3 : 4, NE);
|
||||
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
@@ -45,28 +48,60 @@ void PAHdivSetup2D(const int Q1D,
|
||||
const double J21 = J(q,1,0,e);
|
||||
const double J12 = J(q,0,1,e);
|
||||
const double J22 = J(q,1,1,e);
|
||||
const double c_detJ = W[q] * coeff(q, e) / ((J11*J22)-(J21*J12));
|
||||
// (c/detJ) J^T J
|
||||
y(q,0,e) = c_detJ * (J11*J11 + J21*J21); // 1,1
|
||||
y(q,1,e) = c_detJ * (J11*J12 + J21*J22); // 1,2
|
||||
y(q,2,e) = c_detJ * (J12*J12 + J22*J22); // 2,2
|
||||
const double c_detJ = W[q] / ((J11*J22)-(J21*J12));
|
||||
|
||||
// (1/detJ) J^T C J
|
||||
if (coeffDim == 3 || coeffDim == 4) // Matrix coefficient
|
||||
{
|
||||
const double C11 = C(0,q,e);
|
||||
const double C12 = C(1,q,e);
|
||||
const double C21 = symmetric ? C12 : C(2,q,e);
|
||||
const double C22 = symmetric ? C(2,q,e) : C(3,q,e);
|
||||
const double R11 = C11*J11 + C12*J21;
|
||||
const double R21 = C21*J11 + C22*J21;
|
||||
const double R12 = C11*J12 + C12*J22;
|
||||
const double R22 = C21*J12 + C22*J22;
|
||||
|
||||
y(q,0,e) = c_detJ * (J11*R11 + J21*R21); // 1,1
|
||||
y(q,1,e) = c_detJ * (J11*R12 + J21*R22); // 1,2
|
||||
|
||||
if (symmetric)
|
||||
{
|
||||
y(q,2,e) = c_detJ * (J12*R12 + J22*R22); // 2,2
|
||||
}
|
||||
else
|
||||
{
|
||||
y(q,2,e) = c_detJ * (J12*R11 + J22*R21); // 2,1
|
||||
y(q,3,e) = c_detJ * (J12*R12 + J22*R22); // 2,2
|
||||
}
|
||||
}
|
||||
else // Vector or scalar coefficient
|
||||
{
|
||||
const double C1 = C(0,q,e);
|
||||
const double C2 = (coeffDim == 2 ? C(1,q,e) : C1);
|
||||
y(q,0,e) = c_detJ * (J11*C1*J11 + J21*C2*J21); // 1,1
|
||||
y(q,1,e) = c_detJ * (J11*C1*J12 + J21*C2*J22); // 1,2
|
||||
y(q,2,e) = c_detJ * (J12*C1*J12 + J22*C2*J22); // 2,2
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
// PA H(div) Mass Assemble 3D kernel
|
||||
void PAHdivSetup3D(const int Q1D,
|
||||
const int coeffDim,
|
||||
const int NE,
|
||||
const Array<double> &w,
|
||||
const Vector &j,
|
||||
Vector &coeff_,
|
||||
Vector &op)
|
||||
{
|
||||
const bool symmetric = (coeffDim != 9);
|
||||
const int NQ = Q1D*Q1D*Q1D;
|
||||
auto W = w.Read();
|
||||
auto J = Reshape(j.Read(), NQ, 3, 3, NE);
|
||||
auto coeff = Reshape(coeff_.Read(), NQ, NE);
|
||||
auto y = Reshape(op.Write(), NQ, 6, NE);
|
||||
auto C = Reshape(coeff_.Read(), coeffDim, NQ, NE);
|
||||
auto y = Reshape(op.Write(), NQ, symmetric ? 6 : 9, NE);
|
||||
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
@@ -84,14 +119,58 @@ void PAHdivSetup3D(const int Q1D,
|
||||
const double detJ = J11 * (J22 * J33 - J32 * J23) -
|
||||
/* */ J21 * (J12 * J33 - J32 * J13) +
|
||||
/* */ J31 * (J12 * J23 - J22 * J13);
|
||||
const double c_detJ = W[q] * coeff(q, e) / detJ;
|
||||
// (c/detJ) J^T J
|
||||
y(q,0,e) = c_detJ * (J11*J11 + J21*J21 + J31*J31); // 1,1
|
||||
y(q,1,e) = c_detJ * (J12*J11 + J22*J21 + J32*J31); // 2,1
|
||||
y(q,2,e) = c_detJ * (J13*J11 + J23*J21 + J33*J31); // 3,1
|
||||
y(q,3,e) = c_detJ * (J12*J12 + J22*J22 + J32*J32); // 2,2
|
||||
y(q,4,e) = c_detJ * (J13*J12 + J23*J22 + J33*J32); // 3,2
|
||||
y(q,5,e) = c_detJ * (J13*J13 + J23*J23 + J33*J33); // 3,3
|
||||
const double c_detJ = W[q] / detJ;
|
||||
|
||||
// (1/detJ) J^T C J
|
||||
if (coeffDim == 6 || coeffDim == 9) // Matrix coefficient version
|
||||
{
|
||||
double M[3][3];
|
||||
M[0][0] = C(0, q, e);
|
||||
M[0][1] = C(1, q, e);
|
||||
M[0][2] = C(2, q, e);
|
||||
M[1][0] = (!symmetric) ? C(3, q, e) : M[0][1];
|
||||
M[1][1] = (!symmetric) ? C(4, q, e) : C(3, q, e);
|
||||
M[1][2] = (!symmetric) ? C(5, q, e) : C(4, q, e);
|
||||
M[2][0] = (!symmetric) ? C(6, q, e) : M[0][2];
|
||||
M[2][1] = (!symmetric) ? C(7, q, e) : M[1][2];
|
||||
M[2][2] = (!symmetric) ? C(8, q, e) : C(5, q, e);
|
||||
|
||||
int idx = 0;
|
||||
for (int i=0; i<3; ++i)
|
||||
for (int j = (symmetric ? i : 0); j<3; ++j)
|
||||
{
|
||||
y(q,idx,e) = 0.0;
|
||||
for (int k=0; k<3; ++k)
|
||||
{
|
||||
double MJ_kj = 0.0;
|
||||
for (int l=0; l<3; ++l)
|
||||
{
|
||||
MJ_kj += M[k][l] * J(q,l,j,e);
|
||||
}
|
||||
|
||||
y(q,idx,e) += J(q,k,i,e) * MJ_kj;
|
||||
}
|
||||
|
||||
y(q,idx,e) *= c_detJ;
|
||||
idx++;
|
||||
}
|
||||
}
|
||||
else // Vector or scalar coefficient version
|
||||
{
|
||||
int idx = 0;
|
||||
for (int i=0; i<3; ++i)
|
||||
for (int j=i; j<3; ++j)
|
||||
{
|
||||
y(q,idx,e) = 0.0;
|
||||
for (int k=0; k<3; ++k)
|
||||
{
|
||||
y(q,idx,e) += J(q,k,i,e) * C(coeffDim == 3 ? k : 0, q, e) * J(q,k,j,e);
|
||||
}
|
||||
|
||||
y(q,idx,e) *= c_detJ;
|
||||
idx++;
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
@@ -99,6 +178,7 @@ void PAHdivSetup3D(const int Q1D,
|
||||
void PAHdivMassApply2D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &Bo_,
|
||||
const Array<double> &Bc_,
|
||||
const Array<double> &Bot_,
|
||||
@@ -115,7 +195,7 @@ void PAHdivMassApply2D(const int D1D,
|
||||
auto Bc = Reshape(Bc_.Read(), Q1D, D1D);
|
||||
auto Bot = Reshape(Bot_.Read(), D1D-1, Q1D);
|
||||
auto Bct = Reshape(Bct_.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, 3, NE);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, symmetric ? 3 : 4, NE);
|
||||
auto x = Reshape(x_.Read(), 2*(D1D-1)*D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), 2*(D1D-1)*D1D, NE);
|
||||
|
||||
@@ -178,11 +258,12 @@ void PAHdivMassApply2D(const int D1D,
|
||||
{
|
||||
const double O11 = op(qx,qy,0,e);
|
||||
const double O12 = op(qx,qy,1,e);
|
||||
const double O22 = op(qx,qy,2,e);
|
||||
const double O21 = symmetric ? O12 : op(qx,qy,2,e);
|
||||
const double O22 = symmetric ? op(qx,qy,2,e) : op(qx,qy,3,e);
|
||||
const double massX = mass[qy][qx][0];
|
||||
const double massY = mass[qy][qx][1];
|
||||
mass[qy][qx][0] = (O11*massX)+(O12*massY);
|
||||
mass[qy][qx][1] = (O12*massX)+(O22*massY);
|
||||
mass[qy][qx][1] = (O21*massX)+(O22*massY);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -225,9 +306,179 @@ void PAHdivMassApply2D(const int D1D,
|
||||
}); // end of element loop
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
void SmemPAHdivMassApply2D(const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &Bo_,
|
||||
const Array<double> &Bc_,
|
||||
const Array<double> &Bot_,
|
||||
const Array<double> &Bct_,
|
||||
const Vector &op_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(Bot_);
|
||||
MFEM_CONTRACT_VAR(Bct_);
|
||||
|
||||
static constexpr int VDIM = 2;
|
||||
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
const auto bo = Reshape(Bo_.Read(), Q1D, D1D-1);
|
||||
const auto bc = Reshape(Bc_.Read(), Q1D, D1D);
|
||||
const auto D = Reshape(op_.Read(), Q1D, Q1D, symmetric ? 3 : 4, NE);
|
||||
const auto x = Reshape(x_.Read(), D1D*(D1D-1), VDIM, NE);
|
||||
auto y = y_.ReadWrite();
|
||||
|
||||
MFEM_FORALL_3D(e, NE, Q1D, Q1D, VDIM,
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : HDIV_MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : HDIV_MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
|
||||
MFEM_SHARED double smo[MQ1*(MD1-1)];
|
||||
DeviceMatrix Bo(smo, D1D-1, Q1D);
|
||||
|
||||
MFEM_SHARED double smc[MQ1*MD1];
|
||||
DeviceMatrix Bc(smc, D1D, Q1D);
|
||||
|
||||
MFEM_SHARED double sm0[VDIM*MDQ*MDQ];
|
||||
MFEM_SHARED double sm1[VDIM*MDQ*MDQ];
|
||||
DeviceMatrix X(sm0, D1D*(D1D-1), VDIM);
|
||||
DeviceCube QD(sm1, Q1D, D1D, VDIM);
|
||||
DeviceCube QQ(sm0, Q1D, Q1D, VDIM);
|
||||
|
||||
// Load X, Bo and Bc into shared memory
|
||||
MFEM_FOREACH_THREAD(vd,z,VDIM)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
if (qx < D1D && dy < (D1D-1)) { X(qx + dy*D1D,vd) = x(qx+dy*D1D,vd,e); }
|
||||
if (tidz == 0)
|
||||
{
|
||||
if (dy < (D1D-1)) { Bo(dy,qx) = bo(qx,dy); }
|
||||
Bc(dy,qx) = bc(qx,dy);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
// Apply B operator
|
||||
MFEM_FOREACH_THREAD(vd,z,VDIM)
|
||||
{
|
||||
const int nx = (vd == 0) ? D1D : D1D-1;
|
||||
const int ny = (vd == 1) ? D1D : D1D-1;
|
||||
DeviceCube Xxy(X, nx, ny, VDIM);
|
||||
DeviceMatrix Bx = (vd == 0) ? Bc : Bo;
|
||||
MFEM_FOREACH_THREAD(dy,y,ny)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double dq = 0.0;
|
||||
for (int dx = 0; dx < nx; ++dx)
|
||||
{
|
||||
dq += Xxy(dx,dy,vd) * Bx(dx,qx);
|
||||
}
|
||||
QD(qx,dy,vd) = dq;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(vd,z,VDIM)
|
||||
{
|
||||
const int ny = (vd == 1) ? D1D : D1D-1;
|
||||
DeviceMatrix By = (vd == 1) ? Bc : Bo;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double qq = 0.0;
|
||||
for (int dy = 0; dy < ny; ++dy)
|
||||
{
|
||||
qq += QD(qx,dy,vd) * By(dy,qy);
|
||||
}
|
||||
QQ(qx,qy,vd) = qq;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
// Apply D operator
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
const double Qx = QQ(qx,qy,0);
|
||||
const double Qy = QQ(qx,qy,1);
|
||||
|
||||
const double D11 = D(qx,qy,0,e);
|
||||
const double D12 = D(qx,qy,1,e);
|
||||
const double D21 = symmetric ? D12 : D(qx,qy,2,e);
|
||||
const double D22 = symmetric ? D(qx,qy,2,e) : D(qx,qy,3,e);
|
||||
|
||||
QQ(qx,qy,0) = D11*Qx + D12*Qy;
|
||||
QQ(qx,qy,1) = D21*Qx + D22*Qy;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
// Apply Bt operator
|
||||
MFEM_FOREACH_THREAD(vd,z,VDIM)
|
||||
{
|
||||
const int nx = (vd == 0) ? D1D : D1D-1;
|
||||
DeviceMatrix Btx = (vd == 0) ? Bc : Bo;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,nx)
|
||||
{
|
||||
double qd = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
qd += QQ(qx,qy,vd) * Btx(dx,qx);
|
||||
}
|
||||
QD(dx,qy,vd) = qd;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(vd,z,VDIM)
|
||||
{
|
||||
const int nx = (vd == 0) ? D1D : D1D-1;
|
||||
const int ny = (vd == 1) ? D1D : D1D-1;
|
||||
DeviceMatrix Bty = (vd == 1) ? Bc : Bo;
|
||||
DeviceTensor<4> Yxy(y, nx, ny, VDIM, NE);
|
||||
MFEM_FOREACH_THREAD(dy,y,ny)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,nx)
|
||||
{
|
||||
double dd = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
dd += QD(dx,qy,vd) * Bty(dy,qy);
|
||||
}
|
||||
Yxy(dx,dy,vd,e) += dd;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
});
|
||||
}
|
||||
|
||||
void PAHdivMassAssembleDiagonal2D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &Bo_,
|
||||
const Array<double> &Bc_,
|
||||
const Vector &op_,
|
||||
@@ -238,7 +489,7 @@ void PAHdivMassAssembleDiagonal2D(const int D1D,
|
||||
|
||||
auto Bo = Reshape(Bo_.Read(), Q1D, D1D-1);
|
||||
auto Bc = Reshape(Bc_.Read(), Q1D, D1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, 3, NE);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, symmetric ? 3 : 4, NE);
|
||||
auto diag = Reshape(diag_.ReadWrite(), 2*(D1D-1)*D1D, NE);
|
||||
|
||||
MFEM_FORALL(e, NE,
|
||||
@@ -259,7 +510,7 @@ void PAHdivMassAssembleDiagonal2D(const int D1D,
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const double wy = (c == 1) ? Bc(qy,dy) : Bo(qy,dy);
|
||||
mass[qx] += wy*wy*((c == 0) ? op(qx,qy,0,e) : op(qx,qy,2,e));
|
||||
mass[qx] += wy*wy*((c == 0) ? op(qx,qy,0,e) : op(qx,qy,symmetric ? 2 : 3,e));
|
||||
}
|
||||
}
|
||||
|
||||
@@ -283,6 +534,7 @@ void PAHdivMassAssembleDiagonal2D(const int D1D,
|
||||
void PAHdivMassAssembleDiagonal3D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &Bo_,
|
||||
const Array<double> &Bc_,
|
||||
const Vector &op_,
|
||||
@@ -294,7 +546,7 @@ void PAHdivMassAssembleDiagonal3D(const int D1D,
|
||||
|
||||
auto Bo = Reshape(Bo_.Read(), Q1D, D1D-1);
|
||||
auto Bc = Reshape(Bc_.Read(), Q1D, D1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, 6, NE);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
|
||||
auto diag = Reshape(diag_.ReadWrite(), 3*(D1D-1)*(D1D-1)*D1D, NE);
|
||||
|
||||
MFEM_FORALL(e, NE,
|
||||
@@ -307,7 +559,8 @@ void PAHdivMassAssembleDiagonal3D(const int D1D,
|
||||
const int D1Dy = (c == 1) ? D1D : D1D - 1;
|
||||
const int D1Dx = (c == 0) ? D1D : D1D - 1;
|
||||
|
||||
const int opc = (c == 0) ? 0 : ((c == 1) ? 3 : 5);
|
||||
const int opc = (c == 0) ? 0 : ((c == 1) ? (symmetric ? 3 : 4) :
|
||||
(symmetric ? 5 : 8));
|
||||
|
||||
double mass[HDIV_MAX_Q1D];
|
||||
|
||||
@@ -350,6 +603,7 @@ void PAHdivMassAssembleDiagonal3D(const int D1D,
|
||||
void PAHdivMassApply3D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &Bo_,
|
||||
const Array<double> &Bc_,
|
||||
const Array<double> &Bot_,
|
||||
@@ -366,7 +620,7 @@ void PAHdivMassApply3D(const int D1D,
|
||||
auto Bc = Reshape(Bc_.Read(), Q1D, D1D);
|
||||
auto Bot = Reshape(Bot_.Read(), D1D-1, Q1D);
|
||||
auto Bct = Reshape(Bct_.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, 6, NE);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
|
||||
auto x = Reshape(x_.Read(), 3*(D1D-1)*(D1D-1)*D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), 3*(D1D-1)*(D1D-1)*D1D, NE);
|
||||
|
||||
@@ -461,15 +715,19 @@ void PAHdivMassApply3D(const int D1D,
|
||||
const double O11 = op(qx,qy,qz,0,e);
|
||||
const double O12 = op(qx,qy,qz,1,e);
|
||||
const double O13 = op(qx,qy,qz,2,e);
|
||||
const double O22 = op(qx,qy,qz,3,e);
|
||||
const double O23 = op(qx,qy,qz,4,e);
|
||||
const double O33 = op(qx,qy,qz,5,e);
|
||||
const double O21 = symmetric ? O12 : op(qx,qy,qz,3,e);
|
||||
const double O22 = symmetric ? op(qx,qy,qz,3,e) : op(qx,qy,qz,4,e);
|
||||
const double O23 = symmetric ? op(qx,qy,qz,4,e) : op(qx,qy,qz,5,e);
|
||||
const double O31 = symmetric ? O13 : op(qx,qy,qz,6,e);
|
||||
const double O32 = symmetric ? O23 : op(qx,qy,qz,7,e);
|
||||
const double O33 = symmetric ? op(qx,qy,qz,5,e) : op(qx,qy,qz,8,e);
|
||||
|
||||
const double massX = mass[qz][qy][qx][0];
|
||||
const double massY = mass[qz][qy][qx][1];
|
||||
const double massZ = mass[qz][qy][qx][2];
|
||||
mass[qz][qy][qx][0] = (O11*massX)+(O12*massY)+(O13*massZ);
|
||||
mass[qz][qy][qx][1] = (O12*massX)+(O22*massY)+(O23*massZ);
|
||||
mass[qz][qy][qx][2] = (O13*massX)+(O23*massY)+(O33*massZ);
|
||||
mass[qz][qy][qx][1] = (O21*massX)+(O22*massY)+(O23*massZ);
|
||||
mass[qz][qy][qx][2] = (O31*massX)+(O32*massY)+(O33*massZ);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -537,6 +795,337 @@ void PAHdivMassApply3D(const int D1D,
|
||||
}); // end of element loop
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
void SmemPAHdivMassApply3D(const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &Bo_,
|
||||
const Array<double> &Bc_,
|
||||
const Array<double> &Bot_,
|
||||
const Array<double> &Bct_,
|
||||
const Vector &op_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(Bot_);
|
||||
MFEM_CONTRACT_VAR(Bct_);
|
||||
|
||||
static constexpr int VDIM = 3;
|
||||
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
const auto bo = Reshape(Bo_.Read(), Q1D, D1D-1);
|
||||
const auto bc = Reshape(Bc_.Read(), Q1D, D1D);
|
||||
const auto D = Reshape(op_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
|
||||
const auto x = Reshape(x_.Read(), D1D*(D1D-1)*(D1D-1), VDIM, NE);
|
||||
auto y = y_.ReadWrite();
|
||||
|
||||
MFEM_FORALL_3D(e, NE, Q1D, Q1D, VDIM,
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : HDIV_MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : HDIV_MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
|
||||
MFEM_SHARED double smo[MQ1*(MD1-1)];
|
||||
DeviceMatrix Bo(smo, D1D-1, Q1D);
|
||||
|
||||
MFEM_SHARED double smc[MQ1*MD1];
|
||||
DeviceMatrix Bc(smc, D1D, Q1D);
|
||||
|
||||
MFEM_SHARED double sm0[VDIM*MDQ*MDQ*MDQ];
|
||||
MFEM_SHARED double sm1[VDIM*MDQ*MDQ*MDQ];
|
||||
DeviceMatrix X(sm0, D1D*(D1D-1)*(D1D-1), VDIM);
|
||||
DeviceTensor<4> QDD(sm1, Q1D, D1D, D1D, VDIM);
|
||||
DeviceTensor<4> QQD(sm0, Q1D, Q1D, D1D, VDIM);
|
||||
DeviceTensor<4> QQQ(sm1, Q1D, Q1D, Q1D, VDIM);
|
||||
DeviceTensor<4> DQQ(sm0, D1D, Q1D, Q1D, VDIM);
|
||||
DeviceTensor<4> DDQ(sm1, D1D, D1D, Q1D, VDIM);
|
||||
|
||||
// Load X into shared memory
|
||||
MFEM_FOREACH_THREAD(vd,z,VDIM)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dz,y,D1D-1)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,x,D1D-1)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
X(dx+(dy+dz*(D1D-1))*D1D,vd) = x(dx+(dy+dz*(D1D-1))*D1D,vd,e);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
// Load Bo and Bc into shared memory
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(d,y,D1D-1)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
Bo(d,q) = bo(q,d);
|
||||
}
|
||||
}
|
||||
MFEM_FOREACH_THREAD(d,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
Bc(d,q) = bc(q,d);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
// Apply B operator
|
||||
MFEM_FOREACH_THREAD(vd,z,VDIM)
|
||||
{
|
||||
const int nx = (vd == 0) ? D1D : D1D-1;
|
||||
const int ny = (vd == 1) ? D1D : D1D-1;
|
||||
const int nz = (vd == 2) ? D1D : D1D-1;
|
||||
DeviceTensor<4> Xxyz(X, nx, ny, nz, VDIM);
|
||||
DeviceMatrix Bx = (vd == 0) ? Bc : Bo;
|
||||
MFEM_FOREACH_THREAD(dy,y,ny)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < nz; ++dz) { u[dz] = 0.0; }
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dx = 0; dx < nx; ++dx)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < nz; ++dz)
|
||||
{
|
||||
u[dz] += Xxyz(dx,dy,dz,vd) * Bx(dx,qx);
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < nz; ++dz) { QDD(qx,dy,dz,vd) = u[dz]; }
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(vd,z,VDIM)
|
||||
{
|
||||
const int ny = (vd == 1) ? D1D : D1D-1;
|
||||
const int nz = (vd == 2) ? D1D : D1D-1;
|
||||
DeviceMatrix By = (vd == 1) ? Bc : Bo;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < nz; ++dz) { u[dz] = 0.0; }
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dy = 0; dy < ny; ++dy)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < nz; ++dz)
|
||||
{
|
||||
u[dz] += QDD(qx,dy,dz,vd) * By(dy,qy);
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < nz; ++dz) { QQD(qx,qy,dz,vd) = u[dz]; }
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(vd,z,VDIM)
|
||||
{
|
||||
const int nz = (vd == 2) ? D1D : D1D-1;
|
||||
DeviceMatrix Bz = (vd == 2) ? Bc : Bo;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = 0.0; }
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < nz; ++dz)
|
||||
{
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u[qz] += QQD(qx,qy,dz,vd) * Bz(dz,qz);
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz) { QQQ(qx,qy,qz,vd) = u[qz]; }
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
// Apply D operator
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
const double Qx = QQQ(qx,qy,qz,0);
|
||||
const double Qy = QQQ(qx,qy,qz,1);
|
||||
const double Qz = QQQ(qx,qy,qz,2);
|
||||
|
||||
const double D11 = D(qx,qy,qz,0,e);
|
||||
const double D12 = D(qx,qy,qz,1,e);
|
||||
const double D13 = D(qx,qy,qz,2,e);
|
||||
const double D21 = symmetric ? D12 : D(qx,qy,qz,3,e);
|
||||
const double D22 = symmetric ? D(qx,qy,qz,3,e) : D(qx,qy,qz,4,e);
|
||||
const double D23 = symmetric ? D(qx,qy,qz,4,e) : D(qx,qy,qz,5,e);
|
||||
const double D31 = symmetric ? D13 : D(qx,qy,qz,6,e);
|
||||
const double D32 = symmetric ? D23 : D(qx,qy,qz,7,e);
|
||||
const double D33 = symmetric ? D(qx,qy,qz,5,e) : D(qx,qy,qz,8,e);
|
||||
|
||||
QQQ(qx,qy,qz,0) = D11*Qx + D12*Qy + D13*Qz;
|
||||
QQQ(qx,qy,qz,1) = D21*Qx + D22*Qy + D23*Qz;
|
||||
QQQ(qx,qy,qz,2) = D31*Qx + D32*Qy + D33*Qz;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
// Apply Bt operator
|
||||
MFEM_FOREACH_THREAD(vd,z,VDIM)
|
||||
{
|
||||
const int nx = (vd == 0) ? D1D : D1D-1;
|
||||
DeviceMatrix Btx = (vd == 0) ? Bc : Bo;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,nx)
|
||||
{
|
||||
double u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = 0.0; }
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u[qz] += QQQ(qx,qy,qz,vd) * Btx(dx,qx);
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz) { DQQ(dx,qy,qz,vd) = u[qz]; }
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(vd,z,VDIM)
|
||||
{
|
||||
const int nx = (vd == 0) ? D1D : D1D-1;
|
||||
const int ny = (vd == 1) ? D1D : D1D-1;
|
||||
DeviceMatrix Bty = (vd == 1) ? Bc : Bo;
|
||||
MFEM_FOREACH_THREAD(dy,y,ny)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,nx)
|
||||
{
|
||||
double u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = 0.0; }
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u[qz] += DQQ(dx,qy,qz,vd) * Bty(dy,qy);
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz) { DDQ(dx,dy,qz,vd) = u[qz]; }
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(vd,z,VDIM)
|
||||
{
|
||||
const int nx = (vd == 0) ? D1D : D1D-1;
|
||||
const int ny = (vd == 1) ? D1D : D1D-1;
|
||||
const int nz = (vd == 2) ? D1D : D1D-1;
|
||||
DeviceTensor<5> Yxyz(y, nx, ny, nz, VDIM, NE);
|
||||
DeviceMatrix Btz = (vd == 2) ? Bc : Bo;
|
||||
MFEM_FOREACH_THREAD(dy,y,ny)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,nx)
|
||||
{
|
||||
double u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < nz; ++dz) { u[dz] = 0.0; }
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < nz; ++dz)
|
||||
{
|
||||
u[dz] += DDQ(dx,dy,qz,vd) * Btz(dz,qz);
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < nz; ++dz) { Yxyz(dx,dy,dz,vd,e) += u[dz]; }
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
});
|
||||
}
|
||||
|
||||
void PAHdivMassApply(const int dim,
|
||||
const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &Bo,
|
||||
const Array<double> &Bc,
|
||||
const Array<double> &Bot,
|
||||
const Array<double> &Bct,
|
||||
const Vector &op,
|
||||
const Vector &x,
|
||||
Vector &y)
|
||||
{
|
||||
const int id = (D1D << 4) | Q1D;
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x22: return SmemPAHdivMassApply2D<2,2>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
|
||||
case 0x33: return SmemPAHdivMassApply2D<3,3>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
|
||||
case 0x44: return SmemPAHdivMassApply2D<4,4>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
|
||||
case 0x55: return SmemPAHdivMassApply2D<5,5>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
|
||||
default: // fallback
|
||||
return PAHdivMassApply2D(D1D,Q1D,NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
|
||||
}
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x23: return SmemPAHdivMassApply3D<2,3>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
|
||||
case 0x34: return SmemPAHdivMassApply3D<3,4>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
|
||||
case 0x45: return SmemPAHdivMassApply3D<4,5>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
|
||||
case 0x56: return SmemPAHdivMassApply3D<5,6>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
|
||||
case 0x67: return SmemPAHdivMassApply3D<6,7>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
|
||||
case 0x78: return SmemPAHdivMassApply3D<7,8>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
|
||||
default: // fallback
|
||||
return PAHdivMassApply3D(D1D,Q1D,NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// PA H(div) div-div assemble 2D kernel
|
||||
// NOTE: this is identical to PACurlCurlSetup3D
|
||||
static void PADivDivSetup2D(const int Q1D,
|
||||
@@ -626,7 +1215,7 @@ static void PADivDivApply2D(const int D1D,
|
||||
{
|
||||
double div[MAX_Q1D][MAX_Q1D];
|
||||
|
||||
// div[qy][qx] will be computed as du_x/dx + duy_/dy
|
||||
// div[qy][qx] will be computed as du_x/dx + du_y/dy
|
||||
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
@@ -925,19 +1514,8 @@ void DivDivIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
|
||||
pa_data.SetSize(nq * ne, Device::GetMemoryType());
|
||||
|
||||
Vector coeff(ne * nq);
|
||||
coeff = 1.0;
|
||||
if (Q)
|
||||
{
|
||||
for (int e=0; e<ne; ++e)
|
||||
{
|
||||
ElementTransformation *tr = mesh->GetElementTransformation(e);
|
||||
for (int p=0; p<nq; ++p)
|
||||
{
|
||||
coeff[p + (e * nq)] = Q->Eval(*tr, ir->IntPoint(p));
|
||||
}
|
||||
}
|
||||
}
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(Q, qs, CoefficientStorage::FULL);
|
||||
|
||||
if (el->GetDerivType() == mfem::FiniteElement::DIV && dim == 3)
|
||||
{
|
||||
@@ -1195,18 +1773,14 @@ VectorFEDivergenceIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
|
||||
|
||||
pa_data.SetSize(nq * ne, Device::GetMemoryType());
|
||||
|
||||
Vector coeff(ne * nq);
|
||||
coeff = 1.0;
|
||||
if (Q)
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(Q, qs, CoefficientStorage::FULL);
|
||||
|
||||
if (test_el->GetMapType() == FiniteElement::INTEGRAL)
|
||||
{
|
||||
for (int e=0; e<ne; ++e)
|
||||
{
|
||||
ElementTransformation *tr = mesh->GetElementTransformation(e);
|
||||
for (int p=0; p<nq; ++p)
|
||||
{
|
||||
coeff[p + (e * nq)] = Q->Eval(*tr, ir->IntPoint(p));
|
||||
}
|
||||
}
|
||||
const GeometricFactors *geom =
|
||||
mesh->GetGeometricFactors(*ir, GeometricFactors::DETERMINANTS);
|
||||
coeff /= geom->detJ;
|
||||
}
|
||||
|
||||
if (trial_el->GetDerivType() == mfem::FiniteElement::DIV && dim == 3)
|
||||
|
||||
@@ -31,7 +31,16 @@ void MassIntegrator::AssembleMF(const FiniteElementSpace &fes)
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
delete ceedOp;
|
||||
ceedOp = new ceed::MFMassIntegrator(fes, *ir, Q);
|
||||
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
fes.IsVariableOrder();
|
||||
if (mixed)
|
||||
{
|
||||
ceedOp = new ceed::MixedMFMassIntegrator(*this, fes, Q);
|
||||
}
|
||||
else
|
||||
{
|
||||
ceedOp = new ceed::MFMassIntegrator(fes, *ir, Q);
|
||||
}
|
||||
return;
|
||||
}
|
||||
MFEM_ABORT("Error: MassIntegrator::AssembleMF only implemented with"
|
||||
|
||||
+45
-545
@@ -12,7 +12,9 @@
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "qfunction.hpp"
|
||||
#include "ceed/integrators/mass/mass.hpp"
|
||||
#include "bilininteg_mass_pa.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
@@ -38,7 +40,16 @@ void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
delete ceedOp;
|
||||
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q);
|
||||
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
fes.IsVariableOrder();
|
||||
if (mixed)
|
||||
{
|
||||
ceedOp = new ceed::MixedPAMassIntegrator(*this, fes, Q);
|
||||
}
|
||||
else
|
||||
{
|
||||
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q);
|
||||
}
|
||||
return;
|
||||
}
|
||||
int map_type = el.GetMapType();
|
||||
@@ -51,43 +62,10 @@ void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
dofs1D = maps->ndof;
|
||||
quad1D = maps->nqpt;
|
||||
pa_data.SetSize(ne*nq, mt);
|
||||
Vector coeff;
|
||||
if (Q == nullptr)
|
||||
{
|
||||
coeff.SetSize(1);
|
||||
coeff(0) = 1.0;
|
||||
}
|
||||
else if (ConstantCoefficient* cQ = dynamic_cast<ConstantCoefficient*>(Q))
|
||||
{
|
||||
coeff.SetSize(1);
|
||||
coeff(0) = cQ->constant;
|
||||
}
|
||||
else if (QuadratureFunctionCoefficient* qfQ =
|
||||
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
|
||||
{
|
||||
const QuadratureFunction &qFun = qfQ->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == nq * ne,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
qFun.Read();
|
||||
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
|
||||
}
|
||||
else
|
||||
{
|
||||
coeff.SetSize(nq * ne);
|
||||
auto C = Reshape(coeff.HostWrite(), nq, ne);
|
||||
for (int e = 0; e < ne; ++e)
|
||||
{
|
||||
ElementTransformation& T = *fes.GetElementTransformation(e);
|
||||
for (int q = 0; q < nq; ++q)
|
||||
{
|
||||
C(q,e) = Q->Eval(T, ir->IntPoint(q));
|
||||
}
|
||||
}
|
||||
}
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
|
||||
|
||||
if (dim==1) { MFEM_ABORT("Not supported yet... stay tuned!"); }
|
||||
if (dim==2)
|
||||
{
|
||||
@@ -581,85 +559,18 @@ static void PAMassApply2D(const int NE,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b_.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt_.Read(), D1D, Q1D);
|
||||
auto D = Reshape(d_.Read(), Q1D, Q1D, NE);
|
||||
auto X = Reshape(x_.Read(), D1D, D1D, NE);
|
||||
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
|
||||
MFEM_VERIFY(T_D1D ? T_D1D : d1d <= MAX_D1D, "");
|
||||
MFEM_VERIFY(T_Q1D ? T_Q1D : q1d <= MAX_Q1D, "");
|
||||
|
||||
const auto B = b_.Read();
|
||||
const auto Bt = bt_.Read();
|
||||
const auto D = d_.Read();
|
||||
const auto X = x_.Read();
|
||||
auto Y = y_.ReadWrite();
|
||||
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d; // nvcc workaround
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double sol_xy[max_Q1D][max_Q1D];
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] = 0.0;
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
double sol_x[max_Q1D];
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
sol_x[qy] = 0.0;
|
||||
}
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
const double s = X(dx,dy,e);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_x[qx] += B(qx,dx)* s;
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const double d2q = B(qy,dy);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] += d2q * sol_x[qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] *= D(qx,qy,e);
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
double sol_x[max_D1D];
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_x[dx] = 0.0;
|
||||
}
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const double s = sol_xy[qy][qx];
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_x[dx] += Bt(dx,qx) * s;
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
const double q2d = Bt(dy,qy);
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
Y(dx,dy,e) += q2d * sol_x[dx];
|
||||
}
|
||||
}
|
||||
}
|
||||
internal::PAMassApply2D_Element(e, NE, B, Bt, D, X, Y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
@@ -681,108 +592,13 @@ static void SmemPAMassApply2D(const int NE,
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= MD1, "");
|
||||
MFEM_VERIFY(Q1D <= MQ1, "");
|
||||
auto b = Reshape(b_.Read(), Q1D, D1D);
|
||||
auto D = Reshape(d_.Read(), Q1D, Q1D, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, NE);
|
||||
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
|
||||
const auto b = b_.Read();
|
||||
const auto D = d_.Read();
|
||||
const auto x = x_.Read();
|
||||
auto Y = y_.ReadWrite();
|
||||
MFEM_FORALL_2D(e, NE, Q1D, Q1D, NBZ,
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
MFEM_SHARED double BBt[MQ1*MD1];
|
||||
double (*B)[MD1] = (double (*)[MD1]) BBt;
|
||||
double (*Bt)[MQ1] = (double (*)[MQ1]) BBt;
|
||||
MFEM_SHARED double sm0[NBZ][MDQ*MDQ];
|
||||
MFEM_SHARED double sm1[NBZ][MDQ*MDQ];
|
||||
double (*X)[MD1] = (double (*)[MD1]) (sm0 + tidz);
|
||||
double (*DQ)[MQ1] = (double (*)[MQ1]) (sm1 + tidz);
|
||||
double (*QQ)[MQ1] = (double (*)[MQ1]) (sm0 + tidz);
|
||||
double (*QD)[MD1] = (double (*)[MD1]) (sm1 + tidz);
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
X[dy][dx] = x(dx,dy,e);
|
||||
}
|
||||
}
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
B[q][dy] = b(q,dy);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double dq = 0.0;
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
dq += X[dy][dx] * B[qx][dx];
|
||||
}
|
||||
DQ[dy][qx] = dq;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double qq = 0.0;
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
qq += DQ[dy][qx] * B[qy][dy];
|
||||
}
|
||||
QQ[qy][qx] = qq * D(qx, qy, e);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
Bt[dy][q] = b(q,dy);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double dq = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
dq += QQ[qy][qx] * Bt[dx][qx];
|
||||
}
|
||||
QD[qy][dx] = dq;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double dd = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
dd += (QD[qy][dx] * Bt[dy][qy]);
|
||||
}
|
||||
Y(dx, dy, e) += dd;
|
||||
}
|
||||
}
|
||||
internal::SmemPAMassApply2D_Element<T_D1D,T_Q1D,T_NBZ>(e, NE, b, D, x, Y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
@@ -796,134 +612,18 @@ static void PAMassApply3D(const int NE,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(b_.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(bt_.Read(), D1D, Q1D);
|
||||
auto D = Reshape(d_.Read(), Q1D, Q1D, Q1D, NE);
|
||||
auto X = Reshape(x_.Read(), D1D, D1D, D1D, NE);
|
||||
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
MFEM_VERIFY(T_D1D ? T_D1D : d1d <= MAX_D1D, "");
|
||||
MFEM_VERIFY(T_Q1D ? T_Q1D : q1d <= MAX_Q1D, "");
|
||||
|
||||
const auto B = b_.Read();
|
||||
const auto Bt = bt_.Read();
|
||||
const auto D = d_.Read();
|
||||
const auto X = x_.Read();
|
||||
auto Y = y_.ReadWrite();
|
||||
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double sol_xyz[max_Q1D][max_Q1D][max_Q1D];
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xyz[qz][qy][qx] = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
double sol_xy[max_Q1D][max_Q1D];
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] = 0.0;
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
double sol_x[max_Q1D];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_x[qx] = 0;
|
||||
}
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
const double s = X(dx,dy,dz,e);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_x[qx] += B(qx,dx) * s;
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const double wy = B(qy,dy);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] += wy * sol_x[qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
const double wz = B(qz,dz);
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xyz[qz][qy][qx] += wz * sol_xy[qy][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xyz[qz][qy][qx] *= D(qx,qy,qz,e);
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
double sol_xy[max_D1D][max_D1D];
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_xy[dy][dx] = 0;
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
double sol_x[max_D1D];
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_x[dx] = 0;
|
||||
}
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const double s = sol_xyz[qz][qy][qx];
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_x[dx] += Bt(dx,qx) * s;
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
const double wy = Bt(dy,qy);
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_xy[dy][dx] += wy * sol_x[dx];
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
const double wz = Bt(dz,qz);
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
Y(dx,dy,dz,e) += wz * sol_xy[dy][dx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
internal::PAMassApply3D_Element(e, NE, B, Bt, D, X, Y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
@@ -944,213 +644,13 @@ static void SmemPAMassApply3D(const int NE,
|
||||
constexpr int M1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= M1D, "");
|
||||
MFEM_VERIFY(Q1D <= M1Q, "");
|
||||
auto b = Reshape(b_.Read(), Q1D, D1D);
|
||||
auto d = Reshape(d_.Read(), Q1D, Q1D, Q1D, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
auto b = b_.Read();
|
||||
auto d = d_.Read();
|
||||
auto x = x_.Read();
|
||||
auto y = y_.ReadWrite();
|
||||
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
MFEM_SHARED double sDQ[MQ1*MD1];
|
||||
double (*B)[MD1] = (double (*)[MD1]) sDQ;
|
||||
double (*Bt)[MQ1] = (double (*)[MQ1]) sDQ;
|
||||
MFEM_SHARED double sm0[MDQ*MDQ*MDQ];
|
||||
MFEM_SHARED double sm1[MDQ*MDQ*MDQ];
|
||||
double (*X)[MD1][MD1] = (double (*)[MD1][MD1]) sm0;
|
||||
double (*DDQ)[MD1][MQ1] = (double (*)[MD1][MQ1]) sm1;
|
||||
double (*DQQ)[MQ1][MQ1] = (double (*)[MQ1][MQ1]) sm0;
|
||||
double (*QQQ)[MQ1][MQ1] = (double (*)[MQ1][MQ1]) sm1;
|
||||
double (*QQD)[MQ1][MD1] = (double (*)[MQ1][MD1]) sm0;
|
||||
double (*QDD)[MD1][MD1] = (double (*)[MD1][MD1]) sm1;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
X[dz][dy][dx] = x(dx,dy,dz,e);
|
||||
}
|
||||
}
|
||||
MFEM_FOREACH_THREAD(dx,x,Q1D)
|
||||
{
|
||||
B[dx][dy] = b(dx,dy);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; dz++)
|
||||
{
|
||||
u[dz] = 0;
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
u[dz] += X[dz][dy][dx] * B[qx][dx];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
DDQ[dz][dy][qx] = u[dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; dz++)
|
||||
{
|
||||
u[dz] = 0;
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; dz++)
|
||||
{
|
||||
u[dz] += DDQ[dz][dy][qx] * B[qy][dy];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; dz++)
|
||||
{
|
||||
DQQ[dz][qy][qx] = u[dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; qz++)
|
||||
{
|
||||
u[qz] = 0;
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; qz++)
|
||||
{
|
||||
u[qz] += DQQ[dz][qy][qx] * B[qz][dz];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; qz++)
|
||||
{
|
||||
QQQ[qz][qy][qx] = u[qz] * d(qx,qy,qz,e);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(d,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
Bt[d][q] = b(q,d);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u[qz] = 0;
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u[qz] += QQQ[qz][qy][qx] * Bt[dx][qx];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
QQD[qz][qy][dx] = u[qz];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u[qz] = 0;
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u[qz] += QQD[qz][qy][dx] * Bt[dy][qy];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
QDD[qz][dy][dx] = u[qz];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
u[dz] = 0;
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
u[dz] += QDD[qz][dy][dx] * Bt[dz][qz];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
y(dx,dy,dz,e) += u[dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
internal::SmemPAMassApply3D_Element<T_D1D,T_Q1D>(e, NE, b, d, x, y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
@@ -0,0 +1,632 @@
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_BILININTEG_MASS_PA_HPP
|
||||
#define MFEM_BILININTEG_MASS_PA_HPP
|
||||
|
||||
#include "../config/config.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "../linalg/dtensor.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
template <bool ACCUMULATE = true>
|
||||
MFEM_HOST_DEVICE inline
|
||||
void PAMassApply2D_Element(const int e,
|
||||
const int NE,
|
||||
const double *b_,
|
||||
const double *bt_,
|
||||
const double *d_,
|
||||
const double *x_,
|
||||
double *y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = d1d;
|
||||
const int Q1D = q1d;
|
||||
auto B = ConstDeviceMatrix(b_, Q1D, D1D);
|
||||
auto Bt = ConstDeviceMatrix(bt_, D1D, Q1D);
|
||||
auto D = ConstDeviceCube(d_, Q1D, Q1D, NE);
|
||||
auto X = ConstDeviceCube(x_, D1D, D1D, NE);
|
||||
auto Y = DeviceCube(y_, D1D, D1D, NE);
|
||||
|
||||
if (!ACCUMULATE)
|
||||
{
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
Y(dx, dy, e) = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
constexpr int max_D1D = MAX_D1D;
|
||||
constexpr int max_Q1D = MAX_Q1D;
|
||||
double sol_xy[max_Q1D][max_Q1D];
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] = 0.0;
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
double sol_x[max_Q1D];
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
sol_x[qy] = 0.0;
|
||||
}
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
const double s = X(dx,dy,e);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_x[qx] += B(qx,dx)* s;
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const double d2q = B(qy,dy);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] += d2q * sol_x[qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] *= D(qx,qy,e);
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
double sol_x[max_D1D];
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_x[dx] = 0.0;
|
||||
}
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const double s = sol_xy[qy][qx];
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_x[dx] += Bt(dx,qx) * s;
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
const double q2d = Bt(dy,qy);
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
Y(dx,dy,e) += q2d * sol_x[dx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template<int T_D1D, int T_Q1D, int T_NBZ, bool ACCUMULATE = true>
|
||||
MFEM_HOST_DEVICE inline
|
||||
void SmemPAMassApply2D_Element(const int e,
|
||||
const int NE,
|
||||
const double *b_,
|
||||
const double *d_,
|
||||
const double *x_,
|
||||
double *y_,
|
||||
int d1d = 0,
|
||||
int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
|
||||
auto b = ConstDeviceMatrix(b_, Q1D, D1D);
|
||||
auto D = ConstDeviceCube(d_, Q1D, Q1D, NE);
|
||||
auto x = ConstDeviceCube(x_, D1D, D1D, NE);
|
||||
auto Y = DeviceCube(y_, D1D, D1D, NE);
|
||||
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
|
||||
MFEM_SHARED double BBt[MQ1*MD1];
|
||||
double (*B)[MD1] = (double (*)[MD1]) BBt;
|
||||
double (*Bt)[MQ1] = (double (*)[MQ1]) BBt;
|
||||
MFEM_SHARED double sm0[NBZ][MDQ*MDQ];
|
||||
MFEM_SHARED double sm1[NBZ][MDQ*MDQ];
|
||||
double (*X)[MD1] = (double (*)[MD1]) (sm0 + tidz);
|
||||
double (*DQ)[MQ1] = (double (*)[MQ1]) (sm1 + tidz);
|
||||
double (*QQ)[MQ1] = (double (*)[MQ1]) (sm0 + tidz);
|
||||
double (*QD)[MD1] = (double (*)[MD1]) (sm1 + tidz);
|
||||
|
||||
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
X[dy][dx] = x(dx,dy,e);
|
||||
}
|
||||
}
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
B[q][dy] = b(q,dy);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double dq = 0.0;
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
dq += X[dy][dx] * B[qx][dx];
|
||||
}
|
||||
DQ[dy][qx] = dq;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double qq = 0.0;
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
qq += DQ[dy][qx] * B[qy][dy];
|
||||
}
|
||||
QQ[qy][qx] = qq * D(qx, qy, e);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
Bt[dy][q] = b(q,dy);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double dq = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
dq += QQ[qy][qx] * Bt[dx][qx];
|
||||
}
|
||||
QD[qy][dx] = dq;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double dd = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
dd += (QD[qy][dx] * Bt[dy][qy]);
|
||||
}
|
||||
if (ACCUMULATE)
|
||||
{
|
||||
Y(dx, dy, e) += dd;
|
||||
}
|
||||
else
|
||||
{
|
||||
Y(dx, dy, e) = dd;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <bool ACCUMULATE = true>
|
||||
MFEM_HOST_DEVICE inline
|
||||
void PAMassApply3D_Element(const int e,
|
||||
const int NE,
|
||||
const double *b_,
|
||||
const double *bt_,
|
||||
const double *d_,
|
||||
const double *x_,
|
||||
double *y_,
|
||||
const int d1d,
|
||||
const int q1d)
|
||||
{
|
||||
const int D1D = d1d;
|
||||
const int Q1D = q1d;
|
||||
auto B = ConstDeviceMatrix(b_, Q1D, D1D);
|
||||
auto Bt = ConstDeviceMatrix(bt_, D1D, Q1D);
|
||||
auto D = DeviceTensor<4,const double>(d_, Q1D, Q1D, Q1D, NE);
|
||||
auto X = DeviceTensor<4,const double>(x_, D1D, D1D, D1D, NE);
|
||||
auto Y = DeviceTensor<4,double>(y_, D1D, D1D, D1D, NE);
|
||||
|
||||
if (!ACCUMULATE)
|
||||
{
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
Y(dx, dy, dz, e) = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
constexpr int max_D1D = MAX_D1D;
|
||||
constexpr int max_Q1D = MAX_Q1D;
|
||||
double sol_xyz[max_Q1D][max_Q1D][max_Q1D];
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xyz[qz][qy][qx] = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
double sol_xy[max_Q1D][max_Q1D];
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] = 0.0;
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
double sol_x[max_Q1D];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_x[qx] = 0;
|
||||
}
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
const double s = X(dx,dy,dz,e);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_x[qx] += B(qx,dx) * s;
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const double wy = B(qy,dy);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] += wy * sol_x[qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
const double wz = B(qz,dz);
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xyz[qz][qy][qx] += wz * sol_xy[qy][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xyz[qz][qy][qx] *= D(qx,qy,qz,e);
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
double sol_xy[max_D1D][max_D1D];
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_xy[dy][dx] = 0;
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
double sol_x[max_D1D];
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_x[dx] = 0;
|
||||
}
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const double s = sol_xyz[qz][qy][qx];
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_x[dx] += Bt(dx,qx) * s;
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
const double wy = Bt(dy,qy);
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_xy[dy][dx] += wy * sol_x[dx];
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
const double wz = Bt(dz,qz);
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
Y(dx,dy,dz,e) += wz * sol_xy[dy][dx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template<int T_D1D, int T_Q1D, bool ACCUMULATE = true>
|
||||
MFEM_HOST_DEVICE inline
|
||||
void SmemPAMassApply3D_Element(const int e,
|
||||
const int NE,
|
||||
const double *b_,
|
||||
const double *d_,
|
||||
const double *x_,
|
||||
double *y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
constexpr int D1D = T_D1D ? T_D1D : d1d;
|
||||
constexpr int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
|
||||
auto b = ConstDeviceMatrix(b_, Q1D, D1D);
|
||||
auto d = DeviceTensor<4,const double>(d_, Q1D, Q1D, Q1D, NE);
|
||||
auto x = DeviceTensor<4,const double>(x_, D1D, D1D, D1D, NE);
|
||||
auto y = DeviceTensor<4,double>(y_, D1D, D1D, D1D, NE);
|
||||
|
||||
MFEM_SHARED double sDQ[MQ1*MD1];
|
||||
double (*B)[MD1] = (double (*)[MD1]) sDQ;
|
||||
double (*Bt)[MQ1] = (double (*)[MQ1]) sDQ;
|
||||
MFEM_SHARED double sm0[MDQ*MDQ*MDQ];
|
||||
MFEM_SHARED double sm1[MDQ*MDQ*MDQ];
|
||||
double (*X)[MD1][MD1] = (double (*)[MD1][MD1]) sm0;
|
||||
double (*DDQ)[MD1][MQ1] = (double (*)[MD1][MQ1]) sm1;
|
||||
double (*DQQ)[MQ1][MQ1] = (double (*)[MQ1][MQ1]) sm0;
|
||||
double (*QQQ)[MQ1][MQ1] = (double (*)[MQ1][MQ1]) sm1;
|
||||
double (*QQD)[MQ1][MD1] = (double (*)[MQ1][MD1]) sm0;
|
||||
double (*QDD)[MD1][MD1] = (double (*)[MD1][MD1]) sm1;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
X[dz][dy][dx] = x(dx,dy,dz,e);
|
||||
}
|
||||
}
|
||||
MFEM_FOREACH_THREAD(dx,x,Q1D)
|
||||
{
|
||||
B[dx][dy] = b(dx,dy);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; dz++)
|
||||
{
|
||||
u[dz] = 0;
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
u[dz] += X[dz][dy][dx] * B[qx][dx];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
DDQ[dz][dy][qx] = u[dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; dz++)
|
||||
{
|
||||
u[dz] = 0;
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; dz++)
|
||||
{
|
||||
u[dz] += DDQ[dz][dy][qx] * B[qy][dy];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; dz++)
|
||||
{
|
||||
DQQ[dz][qy][qx] = u[dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; qz++)
|
||||
{
|
||||
u[qz] = 0;
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; qz++)
|
||||
{
|
||||
u[qz] += DQQ[dz][qy][qx] * B[qz][dz];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; qz++)
|
||||
{
|
||||
QQQ[qz][qy][qx] = u[qz] * d(qx,qy,qz,e);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(di,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
Bt[di][q] = b(q,di);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u[qz] = 0;
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u[qz] += QQQ[qz][qy][qx] * Bt[dx][qx];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
QQD[qz][qy][dx] = u[qz];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u[qz] = 0;
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u[qz] += QQD[qz][qy][dx] * Bt[dy][qy];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
QDD[qz][dy][dx] = u[qz];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
u[dz] = 0;
|
||||
}
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
u[dz] += QDD[qz][dy][dx] * Bt[dz][qz];
|
||||
}
|
||||
}
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
if (ACCUMULATE)
|
||||
{
|
||||
y(dx,dy,dz,e) += u[dz];
|
||||
}
|
||||
else
|
||||
{
|
||||
y(dx,dy,dz,e) = u[dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
|
||||
} // namespace internal
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
@@ -12,6 +12,7 @@
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "qfunction.hpp"
|
||||
#include "ceed/integrators/diffusion/diffusion.hpp"
|
||||
|
||||
using namespace std;
|
||||
@@ -149,7 +150,16 @@ void VectorDiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
delete ceedOp;
|
||||
ceedOp = new ceed::PADiffusionIntegrator(fes, *ir, Q);
|
||||
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
fes.IsVariableOrder();
|
||||
if (mixed)
|
||||
{
|
||||
ceedOp = new ceed::MixedPADiffusionIntegrator(*this, fes, Q);
|
||||
}
|
||||
else
|
||||
{
|
||||
ceedOp = new ceed::PADiffusionIntegrator(fes, *ir, Q);
|
||||
}
|
||||
return;
|
||||
}
|
||||
const int dims = el.GetDim();
|
||||
@@ -166,43 +176,9 @@ void VectorDiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
|
||||
MFEM_VERIFY(!VQ && !MQ,
|
||||
"Only scalar coefficient supported for partial assembly for VectorDiffusionIntegrator");
|
||||
Vector coeff;
|
||||
if (Q == nullptr)
|
||||
{
|
||||
coeff.SetSize(1);
|
||||
coeff(0) = 1.0;
|
||||
}
|
||||
else if (ConstantCoefficient* cQ = dynamic_cast<ConstantCoefficient*>(Q))
|
||||
{
|
||||
coeff.SetSize(1);
|
||||
coeff(0) = cQ->constant;
|
||||
}
|
||||
else if (QuadratureFunctionCoefficient* qfQ =
|
||||
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
|
||||
{
|
||||
const QuadratureFunction &qFun = qfQ->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == ne*nq,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
qFun.Read();
|
||||
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
|
||||
}
|
||||
else
|
||||
{
|
||||
coeff.SetSize(nq * ne);
|
||||
auto Co = Reshape(coeff.HostWrite(), nq, ne);
|
||||
for (int e = 0; e < ne; ++e)
|
||||
{
|
||||
ElementTransformation& T = *fes.GetElementTransformation(e);
|
||||
for (int q = 0; q < nq; ++q)
|
||||
{
|
||||
Co(q,e) = Q->Eval(T, ir->IntPoint(q));
|
||||
}
|
||||
}
|
||||
}
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
|
||||
|
||||
const Array<double> &w = ir->GetWeights();
|
||||
const Vector &j = geom->J;
|
||||
|
||||
@@ -30,7 +30,19 @@ void VectorDiffusionIntegrator::AssembleMF(const FiniteElementSpace &fes)
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
delete ceedOp;
|
||||
ceedOp = new ceed::MFDiffusionIntegrator(fes, *ir, Q);
|
||||
MFEM_VERIFY(!VQ && !MQ,
|
||||
"Only scalar coefficient supported for DiffusionIntegrator"
|
||||
" with libCEED");
|
||||
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
fes.IsVariableOrder();
|
||||
if (mixed)
|
||||
{
|
||||
ceedOp = new ceed::MixedMFDiffusionIntegrator(*this, fes, Q);
|
||||
}
|
||||
else
|
||||
{
|
||||
ceedOp = new ceed::MFDiffusionIntegrator(fes, *ir, Q);
|
||||
}
|
||||
return;
|
||||
}
|
||||
MFEM_ABORT("Error: VectorDiffusionIntegrator::AssembleMF only implemented"
|
||||
|
||||
@@ -34,7 +34,16 @@ void VectorMassIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
delete ceedOp;
|
||||
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q);
|
||||
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
fes.IsVariableOrder();
|
||||
if (mixed)
|
||||
{
|
||||
ceedOp = new ceed::MixedPAMassIntegrator(*this, fes, Q);
|
||||
}
|
||||
else
|
||||
{
|
||||
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q);
|
||||
}
|
||||
return;
|
||||
}
|
||||
dim = mesh->Dimension();
|
||||
|
||||
@@ -34,7 +34,16 @@ void VectorMassIntegrator::AssembleMF(const FiniteElementSpace &fes)
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
delete ceedOp;
|
||||
ceedOp = new ceed::MFMassIntegrator(fes, *ir, Q);
|
||||
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
|
||||
fes.IsVariableOrder();
|
||||
if (mixed)
|
||||
{
|
||||
ceedOp = new ceed::MixedMFMassIntegrator(*this, fes, Q);
|
||||
}
|
||||
else
|
||||
{
|
||||
ceedOp = new ceed::MFMassIntegrator(fes, *ir, Q);
|
||||
}
|
||||
return;
|
||||
}
|
||||
MFEM_ABORT("Error: VectorMassIntegrator::AssembleMF only implemented with"
|
||||
|
||||
+53
-128
@@ -11,6 +11,8 @@
|
||||
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "qspace.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -89,6 +91,7 @@ void SmemPAHcurlMassApply3D(const int D1D,
|
||||
Vector &y);
|
||||
|
||||
void PAHdivSetup2D(const int Q1D,
|
||||
const int coeffDim,
|
||||
const int NE,
|
||||
const Array<double> &w,
|
||||
const Vector &j,
|
||||
@@ -96,6 +99,7 @@ void PAHdivSetup2D(const int Q1D,
|
||||
Vector &op);
|
||||
|
||||
void PAHdivSetup3D(const int Q1D,
|
||||
const int coeffDim,
|
||||
const int NE,
|
||||
const Array<double> &w,
|
||||
const Vector &j,
|
||||
@@ -149,6 +153,7 @@ void PAHcurlH1ApplyTranspose3D(const int D1D,
|
||||
void PAHdivMassAssembleDiagonal2D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &Bo_,
|
||||
const Array<double> &Bc_,
|
||||
const Vector &op_,
|
||||
@@ -157,32 +162,24 @@ void PAHdivMassAssembleDiagonal2D(const int D1D,
|
||||
void PAHdivMassAssembleDiagonal3D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &Bo_,
|
||||
const Array<double> &Bc_,
|
||||
const Vector &op_,
|
||||
Vector &diag_);
|
||||
|
||||
void PAHdivMassApply2D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const Array<double> &Bo_,
|
||||
const Array<double> &Bc_,
|
||||
const Array<double> &Bot_,
|
||||
const Array<double> &Bct_,
|
||||
const Vector &op_,
|
||||
const Vector &x_,
|
||||
Vector &y_);
|
||||
|
||||
void PAHdivMassApply3D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const Array<double> &Bo_,
|
||||
const Array<double> &Bc_,
|
||||
const Array<double> &Bot_,
|
||||
const Array<double> &Bct_,
|
||||
const Vector &op_,
|
||||
const Vector &x_,
|
||||
Vector &y_);
|
||||
void PAHdivMassApply(const int dim,
|
||||
const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symmetric,
|
||||
const Array<double> &Bo,
|
||||
const Array<double> &Bc,
|
||||
const Array<double> &Bot,
|
||||
const Array<double> &Bct,
|
||||
const Vector &op,
|
||||
const Vector &x,
|
||||
Vector &y);
|
||||
|
||||
void PAHcurlL2Setup(const int NQ,
|
||||
const int coeffDim,
|
||||
@@ -797,129 +794,63 @@ void VectorFEMassIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
|
||||
trial_fetype = trial_el->GetDerivType();
|
||||
test_fetype = test_el->GetDerivType();
|
||||
|
||||
auto SMQ = dynamic_cast<SymmetricMatrixCoefficient *>(MQ);
|
||||
|
||||
const int MQsymmDim = SMQ ? (SMQ->GetSize() * (SMQ->GetSize() + 1)) / 2 : 0;
|
||||
const int MQfullDim = MQ ? (MQ->GetHeight() * MQ->GetWidth()) : 0;
|
||||
const int MQdim = SMQ ? MQsymmDim : MQfullDim;
|
||||
const int coeffDim = MQ ? MQdim : (DQ ? DQ->GetVDim() : 1);
|
||||
|
||||
symmetric = (SMQ || MQ == NULL);
|
||||
|
||||
const bool trial_curl = (trial_fetype == mfem::FiniteElement::CURL);
|
||||
const bool trial_div = (trial_fetype == mfem::FiniteElement::DIV);
|
||||
const bool test_curl = (test_fetype == mfem::FiniteElement::CURL);
|
||||
const bool test_div = (test_fetype == mfem::FiniteElement::DIV);
|
||||
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(qs, CoefficientStorage::SYMMETRIC);
|
||||
if (Q) { coeff.Project(*Q); }
|
||||
else if (MQ) { coeff.ProjectTranspose(*MQ); }
|
||||
else if (DQ) { coeff.Project(*DQ); }
|
||||
else { coeff.SetConstant(1.0); }
|
||||
|
||||
const int coeff_dim = coeff.GetVDim();
|
||||
symmetric = (coeff_dim != dim*dim);
|
||||
|
||||
if ((trial_curl && test_div) || (trial_div && test_curl))
|
||||
pa_data.SetSize((coeffDim == 1 ? 1 : dim*dim) * nq * ne,
|
||||
pa_data.SetSize((coeff_dim == 1 ? 1 : dim*dim) * nq * ne,
|
||||
Device::GetMemoryType());
|
||||
else
|
||||
pa_data.SetSize((symmetric ? symmDims : MQfullDim) * nq * ne,
|
||||
pa_data.SetSize((symmetric ? symmDims : dims*dims) * nq * ne,
|
||||
Device::GetMemoryType());
|
||||
|
||||
Vector coeff(coeffDim * ne * nq);
|
||||
coeff = 1.0;
|
||||
auto coeffh = Reshape(coeff.HostWrite(), coeffDim, nq, ne);
|
||||
if (Q || DQ || MQ)
|
||||
{
|
||||
Vector DM(DQ ? coeffDim : 0);
|
||||
DenseMatrix M;
|
||||
DenseSymmetricMatrix SM;
|
||||
|
||||
if (DQ)
|
||||
{
|
||||
MFEM_VERIFY(coeffDim == dim, "");
|
||||
}
|
||||
if (SMQ)
|
||||
{
|
||||
MFEM_VERIFY(SMQ->GetSize() == dim, "");
|
||||
SM.SetSize(dim);
|
||||
}
|
||||
else if (MQ)
|
||||
{
|
||||
MFEM_VERIFY(coeffDim == MQdim, "");
|
||||
MFEM_VERIFY(MQ->GetHeight() == dim && MQ->GetWidth() == dim, "");
|
||||
M.SetSize(dim);
|
||||
}
|
||||
|
||||
|
||||
for (int e=0; e<ne; ++e)
|
||||
{
|
||||
ElementTransformation *tr = mesh->GetElementTransformation(e);
|
||||
for (int p=0; p<nq; ++p)
|
||||
{
|
||||
if (SMQ)
|
||||
{
|
||||
SMQ->Eval(SM, *tr, ir->IntPoint(p));
|
||||
int cnt = 0;
|
||||
for (int i=0; i<dim; ++i)
|
||||
for (int j=i; j<dim; ++j, ++cnt)
|
||||
{
|
||||
coeffh(cnt, p, e) = SM(i,j);
|
||||
}
|
||||
}
|
||||
else if (MQ)
|
||||
{
|
||||
MQ->Eval(M, *tr, ir->IntPoint(p));
|
||||
|
||||
for (int i=0; i<dim; ++i)
|
||||
for (int j=0; j<dim; ++j)
|
||||
{
|
||||
coeffh(j+(i*dim), p, e) = M(i,j);
|
||||
}
|
||||
}
|
||||
else if (DQ)
|
||||
{
|
||||
DQ->Eval(DM, *tr, ir->IntPoint(p));
|
||||
for (int i=0; i<coeffDim; ++i)
|
||||
{
|
||||
coeffh(i, p, e) = DM[i];
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
coeffh(0, p, e) = Q->Eval(*tr, ir->IntPoint(p));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (trial_curl && test_curl && dim == 3)
|
||||
{
|
||||
PADiffusionSetup3D(quad1D, coeffDim, ne, ir->GetWeights(), geom->J,
|
||||
PADiffusionSetup3D(quad1D, coeff_dim, ne, ir->GetWeights(), geom->J,
|
||||
coeff, pa_data);
|
||||
}
|
||||
else if (trial_curl && test_curl && dim == 2)
|
||||
{
|
||||
PADiffusionSetup2D<2>(quad1D, coeffDim, ne, ir->GetWeights(), geom->J,
|
||||
PADiffusionSetup2D<2>(quad1D, coeff_dim, ne, ir->GetWeights(), geom->J,
|
||||
coeff, pa_data);
|
||||
}
|
||||
else if (trial_div && test_div && dim == 3)
|
||||
{
|
||||
PAHdivSetup3D(quad1D, ne, ir->GetWeights(), geom->J,
|
||||
PAHdivSetup3D(quad1D, coeff_dim, ne, ir->GetWeights(), geom->J,
|
||||
coeff, pa_data);
|
||||
}
|
||||
else if (trial_div && test_div && dim == 2)
|
||||
{
|
||||
PAHdivSetup2D(quad1D, ne, ir->GetWeights(), geom->J,
|
||||
PAHdivSetup2D(quad1D, coeff_dim, ne, ir->GetWeights(), geom->J,
|
||||
coeff, pa_data);
|
||||
}
|
||||
else if (((trial_curl && test_div) || (trial_div && test_curl)) &&
|
||||
test_fel->GetOrder() == trial_fel->GetOrder())
|
||||
{
|
||||
if (coeffDim == 1)
|
||||
if (coeff_dim == 1)
|
||||
{
|
||||
PAHcurlL2Setup(nq, coeffDim, ne, ir->GetWeights(), coeff, pa_data);
|
||||
PAHcurlL2Setup(nq, coeff_dim, ne, ir->GetWeights(), coeff, pa_data);
|
||||
}
|
||||
else
|
||||
{
|
||||
const bool tr = (trial_div && test_curl);
|
||||
if (dim == 3)
|
||||
PAHcurlHdivSetup3D(quad1D, coeffDim, ne, tr, ir->GetWeights(),
|
||||
PAHcurlHdivSetup3D(quad1D, coeff_dim, ne, tr, ir->GetWeights(),
|
||||
geom->J, coeff, pa_data);
|
||||
else
|
||||
PAHcurlHdivSetup2D(quad1D, coeffDim, ne, tr, ir->GetWeights(),
|
||||
PAHcurlHdivSetup2D(quad1D, coeff_dim, ne, tr, ir->GetWeights(),
|
||||
geom->J, coeff, pa_data);
|
||||
}
|
||||
}
|
||||
@@ -963,7 +894,7 @@ void VectorFEMassIntegrator::AssembleDiagonalPA(Vector& diag)
|
||||
else if (trial_fetype == mfem::FiniteElement::DIV &&
|
||||
test_fetype == trial_fetype)
|
||||
{
|
||||
PAHdivMassAssembleDiagonal3D(dofs1D, quad1D, ne,
|
||||
PAHdivMassAssembleDiagonal3D(dofs1D, quad1D, ne, symmetric,
|
||||
mapsO->B, mapsC->B, pa_data, diag);
|
||||
}
|
||||
else
|
||||
@@ -971,7 +902,7 @@ void VectorFEMassIntegrator::AssembleDiagonalPA(Vector& diag)
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
}
|
||||
}
|
||||
else
|
||||
else // 2D
|
||||
{
|
||||
if (trial_fetype == mfem::FiniteElement::CURL && test_fetype == trial_fetype)
|
||||
{
|
||||
@@ -981,7 +912,7 @@ void VectorFEMassIntegrator::AssembleDiagonalPA(Vector& diag)
|
||||
else if (trial_fetype == mfem::FiniteElement::DIV &&
|
||||
test_fetype == trial_fetype)
|
||||
{
|
||||
PAHdivMassAssembleDiagonal2D(dofs1D, quad1D, ne,
|
||||
PAHdivMassAssembleDiagonal2D(dofs1D, quad1D, ne, symmetric,
|
||||
mapsO->B, mapsC->B, pa_data, diag);
|
||||
}
|
||||
else
|
||||
@@ -1034,8 +965,8 @@ void VectorFEMassIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
}
|
||||
else if (trial_div && test_div)
|
||||
{
|
||||
PAHdivMassApply3D(dofs1D, quad1D, ne, mapsO->B, mapsC->B, mapsO->Bt,
|
||||
mapsC->Bt, pa_data, x, y);
|
||||
PAHdivMassApply(3, dofs1D, quad1D, ne, symmetric, mapsO->B, mapsC->B, mapsO->Bt,
|
||||
mapsC->Bt, pa_data, x, y);
|
||||
}
|
||||
else if (trial_curl && test_div)
|
||||
{
|
||||
@@ -1056,7 +987,7 @@ void VectorFEMassIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
}
|
||||
}
|
||||
else
|
||||
else // 2D
|
||||
{
|
||||
if (trial_curl && test_curl)
|
||||
{
|
||||
@@ -1065,8 +996,8 @@ void VectorFEMassIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
}
|
||||
else if (trial_div && test_div)
|
||||
{
|
||||
PAHdivMassApply2D(dofs1D, quad1D, ne, mapsO->B, mapsC->B, mapsO->Bt,
|
||||
mapsC->Bt, pa_data, x, y);
|
||||
PAHdivMassApply(2, dofs1D, quad1D, ne, symmetric, mapsO->B, mapsC->B, mapsO->Bt,
|
||||
mapsC->Bt, pa_data, x, y);
|
||||
}
|
||||
else if ((trial_curl && test_div) || (trial_div && test_curl))
|
||||
{
|
||||
@@ -1111,6 +1042,11 @@ void VectorFEMassIntegrator::AddMultTransposePA(const Vector &x,
|
||||
|
||||
if (symmetricSpaces)
|
||||
{
|
||||
if (MQ && dynamic_cast<SymmetricMatrixCoefficient*>(MQ) == NULL)
|
||||
{
|
||||
MFEM_ABORT("VectorFEMassIntegrator transpose not implemented for asymmetric MatrixCoefficient");
|
||||
}
|
||||
|
||||
this->AddMultPA(x, y);
|
||||
}
|
||||
}
|
||||
@@ -1156,19 +1092,8 @@ void MixedVectorGradientIntegrator::AssemblePA(const FiniteElementSpace
|
||||
|
||||
pa_data.SetSize(symmDims * nq * ne, Device::GetMemoryType());
|
||||
|
||||
Vector coeff(ne * nq);
|
||||
coeff = 1.0;
|
||||
if (Q)
|
||||
{
|
||||
for (int e=0; e<ne; ++e)
|
||||
{
|
||||
ElementTransformation *tr = mesh->GetElementTransformation(e);
|
||||
for (int p=0; p<nq; ++p)
|
||||
{
|
||||
coeff[p + (e * nq)] = Q->Eval(*tr, ir->IntPoint(p));
|
||||
}
|
||||
}
|
||||
}
|
||||
QuadratureSpace qs(*mesh, *ir);
|
||||
CoefficientVector coeff(Q, qs, CoefficientStorage::FULL);
|
||||
|
||||
// Use the same setup functions as VectorFEMassIntegrator.
|
||||
if (test_el->GetDerivType() == mfem::FiniteElement::CURL && dim == 3)
|
||||
|
||||
@@ -62,6 +62,20 @@ PAConvectionIntegrator::PAConvectionIntegrator(
|
||||
#endif
|
||||
}
|
||||
|
||||
MixedPAConvectionIntegrator::MixedPAConvectionIntegrator(
|
||||
const ConvectionIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::VectorCoefficient *Q,
|
||||
const double alpha)
|
||||
{
|
||||
#ifdef MFEM_USE_CEED
|
||||
ConvectionOperatorInfo info(fes.GetMesh()->Dimension(), alpha);
|
||||
Assemble(integ, info, fes, Q);
|
||||
#else
|
||||
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
|
||||
#endif
|
||||
}
|
||||
|
||||
MFConvectionIntegrator::MFConvectionIntegrator(
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
@@ -77,6 +91,20 @@ MFConvectionIntegrator::MFConvectionIntegrator(
|
||||
#endif
|
||||
}
|
||||
|
||||
MixedMFConvectionIntegrator::MixedMFConvectionIntegrator(
|
||||
const ConvectionIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::VectorCoefficient *Q,
|
||||
const double alpha)
|
||||
{
|
||||
#ifdef MFEM_USE_CEED
|
||||
ConvectionOperatorInfo info(fes.GetMesh()->Dimension(), alpha);
|
||||
Assemble(integ, info, fes, Q);
|
||||
#else
|
||||
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
|
||||
#endif
|
||||
}
|
||||
|
||||
} // namespace ceed
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -13,6 +13,7 @@
|
||||
#define MFEM_LIBCEED_CONV_HPP
|
||||
|
||||
#include "../../interface/integrator.hpp"
|
||||
#include "../../interface/mixed_integrator.hpp"
|
||||
#include "../../../fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
@@ -26,21 +27,39 @@ class PAConvectionIntegrator : public PAIntegrator
|
||||
{
|
||||
public:
|
||||
PAConvectionIntegrator(const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
const mfem::IntegrationRule &ir,
|
||||
mfem::VectorCoefficient *Q,
|
||||
const double alpha);
|
||||
};
|
||||
|
||||
class MixedPAConvectionIntegrator : public MixedIntegrator<PAIntegrator>
|
||||
{
|
||||
public:
|
||||
MixedPAConvectionIntegrator(const ConvectionIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::VectorCoefficient *Q,
|
||||
const double alpha);
|
||||
};
|
||||
|
||||
/// Represent a ConvectionIntegrator with AssemblyLevel::None using libCEED.
|
||||
class MFConvectionIntegrator : public MFIntegrator
|
||||
{
|
||||
public:
|
||||
MFConvectionIntegrator(const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
const mfem::IntegrationRule &ir,
|
||||
mfem::VectorCoefficient *Q,
|
||||
const double alpha);
|
||||
};
|
||||
|
||||
class MixedMFConvectionIntegrator : public MixedIntegrator<MFIntegrator>
|
||||
{
|
||||
public:
|
||||
MixedMFConvectionIntegrator(const ConvectionIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::VectorCoefficient *Q,
|
||||
const double alpha);
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@@ -60,6 +60,32 @@ PADiffusionIntegrator::PADiffusionIntegrator(
|
||||
#endif
|
||||
}
|
||||
|
||||
MixedPADiffusionIntegrator::MixedPADiffusionIntegrator(
|
||||
const DiffusionIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q)
|
||||
{
|
||||
#ifdef MFEM_USE_CEED
|
||||
DiffusionOperatorInfo info(fes.GetMesh()->Dimension());
|
||||
Assemble(integ, info, fes, Q);
|
||||
#else
|
||||
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
|
||||
#endif
|
||||
}
|
||||
|
||||
MixedPADiffusionIntegrator::MixedPADiffusionIntegrator(
|
||||
const VectorDiffusionIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q)
|
||||
{
|
||||
#ifdef MFEM_USE_CEED
|
||||
DiffusionOperatorInfo info(fes.GetMesh()->Dimension());
|
||||
Assemble(integ, info, fes, Q);
|
||||
#else
|
||||
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
|
||||
#endif
|
||||
}
|
||||
|
||||
MFDiffusionIntegrator::MFDiffusionIntegrator(
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
@@ -74,6 +100,32 @@ MFDiffusionIntegrator::MFDiffusionIntegrator(
|
||||
#endif
|
||||
}
|
||||
|
||||
MixedMFDiffusionIntegrator::MixedMFDiffusionIntegrator(
|
||||
const DiffusionIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q)
|
||||
{
|
||||
#ifdef MFEM_USE_CEED
|
||||
DiffusionOperatorInfo info(fes.GetMesh()->Dimension());
|
||||
Assemble(integ, info, fes, Q);
|
||||
#else
|
||||
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
|
||||
#endif
|
||||
}
|
||||
|
||||
MixedMFDiffusionIntegrator::MixedMFDiffusionIntegrator(
|
||||
const VectorDiffusionIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q)
|
||||
{
|
||||
#ifdef MFEM_USE_CEED
|
||||
DiffusionOperatorInfo info(fes.GetMesh()->Dimension());
|
||||
Assemble(integ, info, fes, Q);
|
||||
#else
|
||||
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
|
||||
#endif
|
||||
}
|
||||
|
||||
} // namespace ceed
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -13,6 +13,7 @@
|
||||
#define MFEM_LIBCEED_DIFF_HPP
|
||||
|
||||
#include "../../interface/integrator.hpp"
|
||||
#include "../../interface/mixed_integrator.hpp"
|
||||
#include "../../../fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
@@ -26,19 +27,43 @@ class PADiffusionIntegrator : public PAIntegrator
|
||||
{
|
||||
public:
|
||||
PADiffusionIntegrator(const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
const mfem::IntegrationRule &ir,
|
||||
mfem::Coefficient *Q);
|
||||
};
|
||||
|
||||
class MixedPADiffusionIntegrator : public MixedIntegrator<PAIntegrator>
|
||||
{
|
||||
public:
|
||||
MixedPADiffusionIntegrator(const DiffusionIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q);
|
||||
|
||||
MixedPADiffusionIntegrator(const VectorDiffusionIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q);
|
||||
};
|
||||
|
||||
/// Represent a DiffusionIntegrator with AssemblyLevel::None using libCEED.
|
||||
class MFDiffusionIntegrator : public MFIntegrator
|
||||
{
|
||||
public:
|
||||
MFDiffusionIntegrator(const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
const mfem::IntegrationRule &ir,
|
||||
mfem::Coefficient *Q);
|
||||
};
|
||||
|
||||
class MixedMFDiffusionIntegrator : public MixedIntegrator<MFIntegrator>
|
||||
{
|
||||
public:
|
||||
MixedMFDiffusionIntegrator(const DiffusionIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q);
|
||||
|
||||
MixedMFDiffusionIntegrator(const VectorDiffusionIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q);
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@@ -59,6 +59,30 @@ PAMassIntegrator::PAMassIntegrator(const mfem::FiniteElementSpace &fes,
|
||||
#endif
|
||||
}
|
||||
|
||||
MixedPAMassIntegrator::MixedPAMassIntegrator(const MassIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q)
|
||||
{
|
||||
#ifdef MFEM_USE_CEED
|
||||
MassOperatorInfo info;
|
||||
Assemble(integ, info, fes, Q);
|
||||
#else
|
||||
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
|
||||
#endif
|
||||
}
|
||||
|
||||
MixedPAMassIntegrator::MixedPAMassIntegrator(const VectorMassIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q)
|
||||
{
|
||||
#ifdef MFEM_USE_CEED
|
||||
MassOperatorInfo info;
|
||||
Assemble(integ, info, fes, Q);
|
||||
#else
|
||||
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
|
||||
#endif
|
||||
}
|
||||
|
||||
MFMassIntegrator::MFMassIntegrator(const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
mfem::Coefficient *Q)
|
||||
@@ -72,6 +96,30 @@ MFMassIntegrator::MFMassIntegrator(const mfem::FiniteElementSpace &fes,
|
||||
#endif
|
||||
}
|
||||
|
||||
MixedMFMassIntegrator::MixedMFMassIntegrator(const MassIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q)
|
||||
{
|
||||
#ifdef MFEM_USE_CEED
|
||||
MassOperatorInfo info;
|
||||
Assemble(integ, info, fes, Q);
|
||||
#else
|
||||
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
|
||||
#endif
|
||||
}
|
||||
|
||||
MixedMFMassIntegrator::MixedMFMassIntegrator(const VectorMassIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q)
|
||||
{
|
||||
#ifdef MFEM_USE_CEED
|
||||
MassOperatorInfo info;
|
||||
Assemble(integ, info, fes, Q);
|
||||
#else
|
||||
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
|
||||
#endif
|
||||
}
|
||||
|
||||
} // namespace ceed
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -13,6 +13,7 @@
|
||||
#define MFEM_LIBCEED_MASS_HPP
|
||||
|
||||
#include "../../interface/integrator.hpp"
|
||||
#include "../../interface/mixed_integrator.hpp"
|
||||
#include "../../../fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
@@ -26,19 +27,43 @@ class PAMassIntegrator : public PAIntegrator
|
||||
{
|
||||
public:
|
||||
PAMassIntegrator(const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
const mfem::IntegrationRule &ir,
|
||||
mfem::Coefficient *Q);
|
||||
};
|
||||
|
||||
class MixedPAMassIntegrator : public MixedIntegrator<PAIntegrator>
|
||||
{
|
||||
public:
|
||||
MixedPAMassIntegrator(const MassIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q);
|
||||
|
||||
MixedPAMassIntegrator(const VectorMassIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q);
|
||||
};
|
||||
|
||||
/// Represent a MassIntegrator with AssemblyLevel::None using libCEED.
|
||||
class MFMassIntegrator : public MFIntegrator
|
||||
{
|
||||
public:
|
||||
MFMassIntegrator(const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
const mfem::IntegrationRule &ir,
|
||||
mfem::Coefficient *Q);
|
||||
};
|
||||
|
||||
class MixedMFMassIntegrator : public MixedIntegrator<MFIntegrator>
|
||||
{
|
||||
public:
|
||||
MixedMFMassIntegrator(const MassIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q);
|
||||
|
||||
MixedMFMassIntegrator(const VectorMassIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q);
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@@ -60,6 +60,19 @@ PAVectorConvectionNLFIntegrator::PAVectorConvectionNLFIntegrator(
|
||||
#endif
|
||||
}
|
||||
|
||||
MixedPAVectorConvectionNLIntegrator::MixedPAVectorConvectionNLIntegrator(
|
||||
const VectorConvectionNLFIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q)
|
||||
{
|
||||
#ifdef MFEM_USE_CEED
|
||||
NLConvectionOperatorInfo info(fes.GetMesh()->Dimension());
|
||||
Assemble(integ, info, fes, Q);
|
||||
#else
|
||||
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
|
||||
#endif
|
||||
}
|
||||
|
||||
MFVectorConvectionNLFIntegrator::MFVectorConvectionNLFIntegrator(
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
@@ -74,6 +87,19 @@ MFVectorConvectionNLFIntegrator::MFVectorConvectionNLFIntegrator(
|
||||
#endif
|
||||
}
|
||||
|
||||
MixedMFVectorConvectionNLIntegrator::MixedMFVectorConvectionNLIntegrator(
|
||||
const VectorConvectionNLFIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q)
|
||||
{
|
||||
#ifdef MFEM_USE_CEED
|
||||
NLConvectionOperatorInfo info(fes.GetMesh()->Dimension());
|
||||
Assemble(integ, info, fes, Q);
|
||||
#else
|
||||
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
|
||||
#endif
|
||||
}
|
||||
|
||||
} // namespace ceed
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -13,6 +13,7 @@
|
||||
#define MFEM_LIBCEED_NLCONV_HPP
|
||||
|
||||
#include "../../interface/integrator.hpp"
|
||||
#include "../../interface/mixed_integrator.hpp"
|
||||
#include "../../../fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
@@ -31,6 +32,15 @@ public:
|
||||
mfem::Coefficient *coeff);
|
||||
};
|
||||
|
||||
class MixedPAVectorConvectionNLIntegrator : public MixedIntegrator<PAIntegrator>
|
||||
{
|
||||
public:
|
||||
MixedPAVectorConvectionNLIntegrator(
|
||||
const VectorConvectionNLFIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q);
|
||||
};
|
||||
|
||||
/** Represent a VectorConvectionNLFIntegrator with AssemblyLevel::None
|
||||
using libCEED. */
|
||||
class MFVectorConvectionNLFIntegrator : public MFIntegrator
|
||||
@@ -41,6 +51,15 @@ public:
|
||||
mfem::Coefficient *coeff);
|
||||
};
|
||||
|
||||
class MixedMFVectorConvectionNLIntegrator : public MixedIntegrator<MFIntegrator>
|
||||
{
|
||||
public:
|
||||
MixedMFVectorConvectionNLIntegrator(
|
||||
const VectorConvectionNLFIntegrator &integ,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
mfem::Coefficient *Q);
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@@ -327,13 +327,13 @@ CEED_QFUNCTION(f_apply_conv_mf_const)(void *ctx, CeedInt Q,
|
||||
const CeedScalar A33 = J11 * J22 - J12 * J21;
|
||||
const CeedScalar w = qw[i] * coeff;
|
||||
const CeedScalar qd00 = w * A11;
|
||||
const CeedScalar qd01 = w * A21;
|
||||
const CeedScalar qd02 = w * A31;
|
||||
const CeedScalar qd10 = w * A12;
|
||||
const CeedScalar qd10 = w * A21;
|
||||
const CeedScalar qd20 = w * A31;
|
||||
const CeedScalar qd01 = w * A12;
|
||||
const CeedScalar qd11 = w * A22;
|
||||
const CeedScalar qd12 = w * A32;
|
||||
const CeedScalar qd20 = w * A13;
|
||||
const CeedScalar qd21 = w * A23;
|
||||
const CeedScalar qd21 = w * A32;
|
||||
const CeedScalar qd02 = w * A13;
|
||||
const CeedScalar qd12 = w * A23;
|
||||
const CeedScalar qd22 = w * A33;
|
||||
const CeedScalar u0 = u[i + Q * 0];
|
||||
const CeedScalar u1 = u[i + Q * 1];
|
||||
@@ -440,13 +440,13 @@ CEED_QFUNCTION(f_apply_conv_mf_quad)(void *ctx, CeedInt Q,
|
||||
const CeedScalar A33 = J11 * J22 - J12 * J21;
|
||||
const CeedScalar w = qw[i] * c[i];
|
||||
const CeedScalar qd00 = w * A11;
|
||||
const CeedScalar qd01 = w * A21;
|
||||
const CeedScalar qd02 = w * A31;
|
||||
const CeedScalar qd10 = w * A12;
|
||||
const CeedScalar qd10 = w * A21;
|
||||
const CeedScalar qd20 = w * A31;
|
||||
const CeedScalar qd01 = w * A12;
|
||||
const CeedScalar qd11 = w * A22;
|
||||
const CeedScalar qd12 = w * A32;
|
||||
const CeedScalar qd20 = w * A13;
|
||||
const CeedScalar qd21 = w * A23;
|
||||
const CeedScalar qd21 = w * A32;
|
||||
const CeedScalar qd02 = w * A13;
|
||||
const CeedScalar qd12 = w * A23;
|
||||
const CeedScalar qd22 = w * A33;
|
||||
const CeedScalar u0 = u[i + Q * 0];
|
||||
const CeedScalar u1 = u[i + Q * 1];
|
||||
|
||||
@@ -36,6 +36,8 @@ static CeedElemTopology GetCeedTopology(Geometry::Type geom)
|
||||
return CEED_TOPOLOGY_HEX;
|
||||
case Geometry::PRISM:
|
||||
return CEED_TOPOLOGY_PRISM;
|
||||
case Geometry::PYRAMID:
|
||||
return CEED_TOPOLOGY_PYRAMID;
|
||||
default:
|
||||
MFEM_ABORT("This type of element is not supported");
|
||||
return CEED_TOPOLOGY_PRISM; // Silence warning
|
||||
@@ -43,11 +45,11 @@ static CeedElemTopology GetCeedTopology(Geometry::Type geom)
|
||||
}
|
||||
|
||||
static void InitNonTensorBasis(const mfem::FiniteElementSpace &fes,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
Ceed ceed, CeedBasis *basis)
|
||||
{
|
||||
const mfem::DofToQuad &maps = fes.GetFE(0)->
|
||||
GetDofToQuad(ir,mfem::DofToQuad::FULL);
|
||||
const mfem::DofToQuad &maps = fe.GetDofToQuad(ir, mfem::DofToQuad::FULL);
|
||||
mfem::Mesh *mesh = fes.GetMesh();
|
||||
const int dim = mesh->Dimension();
|
||||
const int ndofs = maps.ndof;
|
||||
@@ -62,18 +64,18 @@ static void InitNonTensorBasis(const mfem::FiniteElementSpace &fes,
|
||||
if (dim>2) { qX(2,i) = ip.z; }
|
||||
qW(i) = ip.weight;
|
||||
}
|
||||
CeedBasisCreateH1(ceed, GetCeedTopology(fes.GetFE(0)->GetGeomType()),
|
||||
CeedBasisCreateH1(ceed, GetCeedTopology(fe.GetGeomType()),
|
||||
fes.GetVDim(), ndofs, nqpts,
|
||||
maps.Bt.GetData(), maps.Gt.GetData(),
|
||||
qX.GetData(), qW.GetData(), basis);
|
||||
}
|
||||
|
||||
static void InitTensorBasis(const mfem::FiniteElementSpace &fes,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
Ceed ceed, CeedBasis *basis)
|
||||
{
|
||||
const mfem::DofToQuad &maps =
|
||||
fes.GetFE(0)->GetDofToQuad(ir, mfem::DofToQuad::TENSOR);
|
||||
const mfem::DofToQuad &maps = fe.GetDofToQuad(ir, mfem::DofToQuad::TENSOR);
|
||||
mfem::Mesh *mesh = fes.GetMesh();
|
||||
const int ndofs = maps.ndof;
|
||||
const int nqpts = maps.nqpt;
|
||||
@@ -96,28 +98,30 @@ static void InitTensorBasis(const mfem::FiniteElementSpace &fes,
|
||||
qW.GetData(), basis);
|
||||
}
|
||||
|
||||
void InitBasis(const FiniteElementSpace &fes,
|
||||
const IntegrationRule &irm,
|
||||
Ceed ceed, CeedBasis *basis)
|
||||
static void InitBasisImpl(const FiniteElementSpace &fes,
|
||||
const FiniteElement &fe,
|
||||
const IntegrationRule &ir,
|
||||
Ceed ceed, CeedBasis *basis)
|
||||
{
|
||||
// Check for FES -> basis, restriction in hash tables
|
||||
const mfem::FiniteElement *fe = fes.GetFE(0);
|
||||
const int P = fe->GetDof();
|
||||
const int Q = irm.GetNPoints();
|
||||
const int P = fe.GetDof();
|
||||
const int Q = ir.GetNPoints();
|
||||
const int ncomp = fes.GetVDim();
|
||||
BasisKey basis_key(&fes, &irm, ncomp, P, Q);
|
||||
BasisKey basis_key(&fes, &ir, ncomp, P, Q);
|
||||
auto basis_itr = mfem::internal::ceed_basis_map.find(basis_key);
|
||||
const bool tensor = dynamic_cast<const mfem::TensorBasisElement *>
|
||||
(&fe) != nullptr;
|
||||
|
||||
// Init or retreive key values
|
||||
// Init or retrieve key values
|
||||
if (basis_itr == mfem::internal::ceed_basis_map.end())
|
||||
{
|
||||
if (UsesTensorBasis(fes))
|
||||
if ( tensor )
|
||||
{
|
||||
InitTensorBasis(fes, irm, ceed, basis);
|
||||
InitTensorBasis(fes, fe, ir, ceed, basis);
|
||||
}
|
||||
else
|
||||
{
|
||||
InitNonTensorBasis(fes, irm, ceed, basis);
|
||||
InitNonTensorBasis(fes, fe, ir, ceed, basis);
|
||||
}
|
||||
mfem::internal::ceed_basis_map[basis_key] = *basis;
|
||||
}
|
||||
@@ -127,6 +131,24 @@ void InitBasis(const FiniteElementSpace &fes,
|
||||
}
|
||||
}
|
||||
|
||||
void InitBasis(const FiniteElementSpace &fes,
|
||||
const IntegrationRule &ir,
|
||||
Ceed ceed, CeedBasis *basis)
|
||||
{
|
||||
const mfem::FiniteElement &fe = *fes.GetFE(0);
|
||||
InitBasisImpl(fes, fe, ir, ceed, basis);
|
||||
}
|
||||
|
||||
void InitBasisWithIndices(const FiniteElementSpace &fes,
|
||||
const IntegrationRule &ir,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
Ceed ceed, CeedBasis *basis)
|
||||
{
|
||||
const mfem::FiniteElement &fe = *fes.GetFE(indices[0]);
|
||||
InitBasisImpl(fes, fe, ir, ceed, basis);
|
||||
}
|
||||
|
||||
#endif
|
||||
|
||||
} // namespace ceed
|
||||
|
||||
@@ -22,17 +22,32 @@ namespace ceed
|
||||
|
||||
#ifdef MFEM_USE_CEED
|
||||
|
||||
/** @brief Initialize a CeedBasis.
|
||||
/** @brief Initialize a CeedBasis for non-mixed meshes.
|
||||
|
||||
@param[in] fes Input finite element space.
|
||||
@param[in] irm Input integration rule.
|
||||
@param[in] ir Input integration rule.
|
||||
@param[in] ceed Input Ceed object.
|
||||
@param[out] basis The address of the initialized CeedBasis object.
|
||||
*/
|
||||
void InitBasis(const FiniteElementSpace &fes,
|
||||
const IntegrationRule &irm,
|
||||
const IntegrationRule &ir,
|
||||
Ceed ceed, CeedBasis *basis);
|
||||
|
||||
/** @brief Initialize a CeedBasis for mixed meshes.
|
||||
|
||||
@param[in] fes The finite element space.
|
||||
@param[in] ir is the integration rule for the operator.
|
||||
@param[in] nelem The number of elements.
|
||||
@param[in] indices The indices of the elements of same type in the
|
||||
`FiniteElementSpace`.
|
||||
@param[in] ceed The Ceed object.
|
||||
@param[out] basis The `CeedBasis` to initialize. */
|
||||
void InitBasisWithIndices(const FiniteElementSpace &fes,
|
||||
const IntegrationRule &ir,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
Ceed ceed, CeedBasis *basis);
|
||||
|
||||
#endif
|
||||
|
||||
} // namespace ceed
|
||||
|
||||
@@ -14,11 +14,13 @@
|
||||
|
||||
#ifdef MFEM_USE_CEED
|
||||
|
||||
#include "../../../general/forall.hpp"
|
||||
#include "../../../config/config.hpp"
|
||||
#include "../../../linalg/vector.hpp"
|
||||
#include "../../../linalg/dtensor.hpp"
|
||||
#include "../../../mesh/mesh.hpp"
|
||||
#include "../../gridfunc.hpp"
|
||||
#include "../../qfunction.hpp"
|
||||
#include "util.hpp"
|
||||
#include "ceed.hpp"
|
||||
|
||||
@@ -77,7 +79,14 @@ struct QuadCoefficient : VariableCoefficient
|
||||
|
||||
/** @brief Initializes an mfem::ceed::Coefficient @a coeff_ptr from an
|
||||
mfem::Coefficient @a Q, an mfem::Mesh @a mesh, and an mfem::IntegrationRule
|
||||
@a ir. */
|
||||
@a ir.
|
||||
|
||||
@param[in] Q is the coefficient from the `Integrator`.
|
||||
@param[in] mesh is the mesh.
|
||||
@param[in] ir is the integration rule.
|
||||
@param[out] coeff_ptr is the structure to store the coefficient for the
|
||||
`CeedOperator`.
|
||||
@param[out] ctx is the Context associated to the QFunction. */
|
||||
template <typename Context>
|
||||
void InitCoefficient(mfem::Coefficient *Q, mfem::Mesh &mesh,
|
||||
const mfem::IntegrationRule &ir,
|
||||
@@ -113,7 +122,7 @@ void InitCoefficient(mfem::Coefficient *Q, mfem::Mesh &mesh,
|
||||
MFEM_VERIFY(qFun.Size() == nq * ne,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
qFun.Read();
|
||||
@@ -143,8 +152,15 @@ void InitCoefficient(mfem::Coefficient *Q, mfem::Mesh &mesh,
|
||||
|
||||
|
||||
/** @brief Initializes an mfem::ceed::Coefficient @a coeff_ptr from an
|
||||
mfem::VectorCoefficient @a Q, an mfem::Mesh @a mesh, and an
|
||||
mfem::IntegrationRule @a ir. */
|
||||
mfem::VectorCoefficient @a VQ, an mfem::Mesh @a mesh, and an
|
||||
mfem::IntegrationRule @a ir.
|
||||
|
||||
@param[in] VQ is the vector coefficient from the `Integrator`.
|
||||
@param[in] mesh is the mesh.
|
||||
@param[in] ir is the integration rule.
|
||||
@param[out] coeff_ptr is the structure to store the coefficient for the
|
||||
`CeedOperator`.
|
||||
@param[out] ctx is the Context associated to the QFunction. */
|
||||
template <typename Context>
|
||||
void InitCoefficient(mfem::VectorCoefficient *VQ, mfem::Mesh &mesh,
|
||||
const mfem::IntegrationRule &ir,
|
||||
@@ -180,7 +196,7 @@ void InitCoefficient(mfem::VectorCoefficient *VQ, mfem::Mesh &mesh,
|
||||
MFEM_VERIFY(qFun.Size() == dim * nq * ne,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetElementIntRule(0),
|
||||
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
qFun.Read();
|
||||
@@ -214,6 +230,209 @@ void InitCoefficient(mfem::VectorCoefficient *VQ, mfem::Mesh &mesh,
|
||||
}
|
||||
}
|
||||
|
||||
/** @brief Initializes an mfem::ceed::Coefficient @a coeff_ptr from an
|
||||
mfem::Coefficient @a Q, an mfem::Mesh @a mesh, and an mfem::IntegrationRule
|
||||
@a ir for the elements given by the indices @a indices.
|
||||
|
||||
@param[in] Q is the coefficient from the `Integrator`.
|
||||
@param[in] mesh is the mesh.
|
||||
@param[in] ir is the integration rule.
|
||||
@param[in] nelem The number of elements.
|
||||
@param[in] indices The indices of the elements of same type in the
|
||||
`FiniteElementSpace`.
|
||||
@param[out] coeff_ptr is the structure to store the coefficient for the
|
||||
`CeedOperator`.
|
||||
@param[out] ctx is the Context associated to the QFunction. */
|
||||
template <typename Context>
|
||||
void InitCoefficientWithIndices(mfem::Coefficient *Q, mfem::Mesh &mesh,
|
||||
const mfem::IntegrationRule &ir,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
Coefficient*& coeff_ptr, Context &ctx)
|
||||
{
|
||||
if ( Q == nullptr )
|
||||
{
|
||||
Coefficient *ceedCoeff = new Coefficient(1);
|
||||
ctx.coeff = 1.0;
|
||||
coeff_ptr = ceedCoeff;
|
||||
}
|
||||
else if (ConstantCoefficient *const_coeff =
|
||||
dynamic_cast<ConstantCoefficient*>(Q))
|
||||
{
|
||||
Coefficient *ceedCoeff = new Coefficient(1);
|
||||
ctx.coeff = const_coeff->constant;
|
||||
coeff_ptr = ceedCoeff;
|
||||
}
|
||||
else if (GridFunctionCoefficient* gf_coeff =
|
||||
dynamic_cast<GridFunctionCoefficient*>(Q))
|
||||
{
|
||||
GridCoefficient *ceedCoeff =
|
||||
new GridCoefficient(*gf_coeff->GetGridFunction());
|
||||
coeff_ptr = ceedCoeff;
|
||||
}
|
||||
else if (QuadratureFunctionCoefficient *cQ =
|
||||
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
|
||||
{
|
||||
QuadCoefficient *ceedCoeff = new QuadCoefficient(1);
|
||||
const int ne = mesh.GetNE();
|
||||
const int nq = ir.GetNPoints();
|
||||
const mfem::QuadratureFunction &qFun = cQ->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == nq * ne,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
ceedCoeff->coeff.SetSize(nq * nelem);
|
||||
Memory<int> m_indices((int*)indices, nelem, false);
|
||||
auto in = Reshape(qFun.Read(), nq, ne);
|
||||
auto d_indices = Read(m_indices, nelem);
|
||||
auto out = Reshape(ceedCoeff->coeff.Write(), nq, nelem);
|
||||
MFEM_FORALL(i, nelem * nq,
|
||||
{
|
||||
const int q = i%nq;
|
||||
const int sub_e = i/nq;
|
||||
const int e = d_indices[sub_e];
|
||||
out(q, sub_e) = in(q, e);
|
||||
});
|
||||
m_indices.DeleteDevice();
|
||||
InitVector(ceedCoeff->coeff, ceedCoeff->coeffVector);
|
||||
coeff_ptr = ceedCoeff;
|
||||
}
|
||||
else
|
||||
{
|
||||
QuadCoefficient *ceedCoeff = new QuadCoefficient(1);
|
||||
const int nq = ir.GetNPoints();
|
||||
ceedCoeff->coeff.SetSize(nq * nelem);
|
||||
auto C = Reshape(ceedCoeff->coeff.HostWrite(), nq, nelem);
|
||||
for (int i = 0; i < nelem; ++i)
|
||||
{
|
||||
const int e = indices[i];
|
||||
mfem::ElementTransformation &T = *mesh.GetElementTransformation(e);
|
||||
for (int q = 0; q < nq; ++q)
|
||||
{
|
||||
C(q, i) = Q->Eval(T, ir.IntPoint(q));
|
||||
}
|
||||
}
|
||||
InitVector(ceedCoeff->coeff, ceedCoeff->coeffVector);
|
||||
coeff_ptr = ceedCoeff;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/** @brief Initializes an mfem::ceed::Coefficient @a coeff_ptr from an
|
||||
mfem::VectorCoefficient @a Q, an mfem::Mesh @a mesh, and an
|
||||
mfem::IntegrationRule @a ir for the elements given by the indices @a indices.
|
||||
|
||||
@param[in] VQ is the vector coefficient from the `Integrator`.
|
||||
@param[in] mesh is the mesh.
|
||||
@param[in] ir is the integration rule.
|
||||
@param[in] nelem The number of elements.
|
||||
@param[in] indices The indices of the elements of same type in the
|
||||
`FiniteElementSpace`.
|
||||
@param[out] coeff_ptr is the structure to store the coefficient for the
|
||||
`CeedOperator`.
|
||||
@param[out] ctx is the Context associated to the QFunction. */
|
||||
template <typename Context>
|
||||
void InitCoefficientWithIndices(mfem::VectorCoefficient *VQ, mfem::Mesh &mesh,
|
||||
const mfem::IntegrationRule &ir,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
Coefficient *&coeff_ptr, Context &ctx)
|
||||
{
|
||||
if (VectorConstantCoefficient *const_coeff =
|
||||
dynamic_cast<VectorConstantCoefficient*>(VQ))
|
||||
{
|
||||
const int vdim = const_coeff->GetVDim();
|
||||
const mfem::Vector &val = const_coeff->GetVec();
|
||||
Coefficient *ceedCoeff = new Coefficient(vdim);
|
||||
for (int i = 0; i < vdim; i++)
|
||||
{
|
||||
ctx.coeff[i] = val[i];
|
||||
}
|
||||
coeff_ptr = ceedCoeff;
|
||||
}
|
||||
else if (VectorGridFunctionCoefficient* vgf_coeff =
|
||||
dynamic_cast<VectorGridFunctionCoefficient*>(VQ))
|
||||
{
|
||||
GridCoefficient *ceedCoeff =
|
||||
new GridCoefficient(*vgf_coeff->GetGridFunction());
|
||||
coeff_ptr = ceedCoeff;
|
||||
}
|
||||
else if (VectorQuadratureFunctionCoefficient *cQ =
|
||||
dynamic_cast<VectorQuadratureFunctionCoefficient*>(VQ))
|
||||
{
|
||||
QuadCoefficient *ceedCoeff = new QuadCoefficient(cQ->GetVDim());
|
||||
const int dim = mesh.Dimension();
|
||||
const int ne = mesh.GetNE();
|
||||
const int nq = ir.GetNPoints();
|
||||
const mfem::QuadratureFunction &qFun = cQ->GetQuadFunction();
|
||||
MFEM_VERIFY(qFun.Size() == dim * nq * ne,
|
||||
"Incompatible QuadratureFunction dimension \n");
|
||||
|
||||
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetIntRule(0),
|
||||
"IntegrationRule used within integrator and in"
|
||||
" QuadratureFunction appear to be different");
|
||||
ceedCoeff->coeff.SetSize(dim * nq * nelem);
|
||||
Memory<int> m_indices((int*)indices, nelem, false);
|
||||
auto in = Reshape(qFun.Read(), dim, nq, ne);
|
||||
auto d_indices = Read(m_indices, nelem);
|
||||
auto out = Reshape(ceedCoeff->coeff.Write(), dim, nq, nelem);
|
||||
MFEM_FORALL(i, nelem * nq,
|
||||
{
|
||||
const int q = i%nq;
|
||||
const int sub_e = i/nq;
|
||||
const int e = d_indices[sub_e];
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
out(d, q, sub_e) = in(d, q, e);
|
||||
}
|
||||
});
|
||||
m_indices.DeleteDevice();
|
||||
InitVector(ceedCoeff->coeff, ceedCoeff->coeffVector);
|
||||
coeff_ptr = ceedCoeff;
|
||||
}
|
||||
else
|
||||
{
|
||||
const int dim = mesh.Dimension();
|
||||
QuadCoefficient *ceedCoeff = new QuadCoefficient(dim);
|
||||
const int nq = ir.GetNPoints();
|
||||
ceedCoeff->coeff.SetSize(dim * nq * nelem);
|
||||
auto C = Reshape(ceedCoeff->coeff.HostWrite(), dim, nq, nelem);
|
||||
mfem::DenseMatrix Q_ir;
|
||||
for (int i = 0; i < nelem; ++i)
|
||||
{
|
||||
const int e = indices[i];
|
||||
mfem::ElementTransformation &T = *mesh.GetElementTransformation(e);
|
||||
VQ->Eval(Q_ir, T, ir);
|
||||
for (int q = 0; q < nq; ++q)
|
||||
{
|
||||
for (int d = 0; d < dim; ++d)
|
||||
{
|
||||
C(d, q, i) = Q_ir(d, q);
|
||||
}
|
||||
}
|
||||
}
|
||||
InitVector(ceedCoeff->coeff, ceedCoeff->coeffVector);
|
||||
coeff_ptr = ceedCoeff;
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Coeff, typename Context>
|
||||
void InitCoefficient(Coeff *Q, mfem::Mesh &mesh,
|
||||
const mfem::IntegrationRule &ir, int nelem,
|
||||
const int* indices, Coefficient *&coeff_ptr, Context &ctx)
|
||||
{
|
||||
if (indices)
|
||||
{
|
||||
InitCoefficientWithIndices(Q, mesh, ir, nelem, indices, coeff_ptr, ctx);
|
||||
}
|
||||
else
|
||||
{
|
||||
InitCoefficient(Q, mesh, ir, coeff_ptr, ctx);
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace ceed
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -18,6 +18,7 @@
|
||||
#include "operator.hpp"
|
||||
#include "coefficient.hpp"
|
||||
#include "restriction.hpp"
|
||||
#include "util.hpp"
|
||||
#include "ceed.hpp"
|
||||
|
||||
namespace mfem
|
||||
@@ -86,6 +87,7 @@ protected:
|
||||
CeedQFunctionContext build_ctx;
|
||||
CeedOperator build_oper;
|
||||
|
||||
public:
|
||||
PAIntegrator()
|
||||
: Operator(),
|
||||
trial_basis(nullptr), test_basis(nullptr), mesh_basis(nullptr),
|
||||
@@ -95,23 +97,51 @@ protected:
|
||||
qdata(nullptr), coeff(nullptr), build_ctx(nullptr), build_oper(nullptr)
|
||||
{ }
|
||||
|
||||
public:
|
||||
/** This method assembles the PAIntegrator.
|
||||
/** @brief This method assembles the `PAIntegrator` with the given
|
||||
`CeedOperatorInfo` @a info, an `mfem::FiniteElementSpace` @a fes, an
|
||||
`mfem::IntegrationRule` @a ir, and `mfem::Coefficient` or
|
||||
`mfem::VectorCoefficient` @a Q.
|
||||
The `CeedOperatorInfo` type is expected to inherit from `OperatorInfo`,
|
||||
and contain a `Context` type relevant to the qFunctions.
|
||||
|
||||
@param[in] info the `CeedOperatorInfo` describing the `CeedOperator`,
|
||||
the `CeedOperatorInfo` type is expected to inherit from
|
||||
`OperatorInfo` and contain a `Context` type relevant to
|
||||
the qFunctions.
|
||||
@param[in] fes the `FiniteElementSpace` for the form,
|
||||
@param[in] ir the `IntegrationRule` for the numerical integration,
|
||||
@param[in] Q `Coefficient` or `VectorCoefficient`. */
|
||||
@param[in] info is the structure describing the CeedOperator to assemble.
|
||||
@param[in] fes is the finite element space.
|
||||
@param[in] ir is the integration rule for the operator.
|
||||
@param[in] Q is the coefficient from the `Integrator`. */
|
||||
template <typename CeedOperatorInfo, typename CoeffType>
|
||||
void Assemble(CeedOperatorInfo &info,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
const mfem::IntegrationRule &ir,
|
||||
CoeffType *Q)
|
||||
{
|
||||
Assemble(info, fes, fes, irm, Q);
|
||||
Assemble(info, fes, ir, fes.GetNE(), nullptr, Q);
|
||||
}
|
||||
|
||||
/** @brief This method assembles the `PAIntegrator` with the given
|
||||
`CeedOperatorInfo` @a info, an `mfem::FiniteElementSpace` @a fes, an
|
||||
`mfem::IntegrationRule` @a ir, and `mfem::Coefficient` or
|
||||
`mfem::VectorCoefficient` @a Q for the elements given by the indices
|
||||
@a indices.
|
||||
The `CeedOperatorInfo` type is expected to inherit from `OperatorInfo`,
|
||||
and contain a `Context` type relevant to the qFunctions.
|
||||
|
||||
@param[in] info is the structure describing the CeedOperator to assemble.
|
||||
@param[in] fes is the finite element space.
|
||||
@param[in] ir is the integration rule for the operator.
|
||||
@param[in] nelem The number of elements.
|
||||
@param[in] indices The indices of the elements of same type in the
|
||||
`FiniteElementSpace`. If `indices == nullptr`, assumes
|
||||
that the `FiniteElementSpace` is not mixed.
|
||||
@param[in] Q is the coefficient from the `Integrator`. */
|
||||
template <typename CeedOperatorInfo, typename CoeffType>
|
||||
void Assemble(CeedOperatorInfo &info,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &ir,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
CoeffType *Q)
|
||||
{
|
||||
Assemble(info, fes, fes, ir, nelem, indices, Q);
|
||||
}
|
||||
|
||||
/** This method assembles the PAIntegrator for mixed forms.
|
||||
@@ -128,12 +158,40 @@ public:
|
||||
void Assemble(CeedOperatorInfo &info,
|
||||
const mfem::FiniteElementSpace &trial_fes,
|
||||
const mfem::FiniteElementSpace &test_fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
const mfem::IntegrationRule &ir,
|
||||
CoeffType *Q)
|
||||
{
|
||||
Assemble(info, trial_fes, test_fes, ir, trial_fes.GetNE(), nullptr, Q);
|
||||
}
|
||||
|
||||
/** This method assembles the PAIntegrator for mixed forms on mixed meshes.
|
||||
|
||||
@param[in] info the `CeedOperatorInfo` describing the `CeedOperator`,
|
||||
the `CeedOperatorInfo` type is expected to inherit from
|
||||
`OperatorInfo` and contain a `Context` type relevant to
|
||||
the qFunctions.
|
||||
@param[in] trial_fes the trial `FiniteElementSpace` for the form,
|
||||
@param[in] test_fes the test `FiniteElementSpace` for the form,
|
||||
@param[in] ir the `IntegrationRule` for the numerical integration,
|
||||
@param[in] nelem The number of elements,
|
||||
@param[in] indices The indices of the elements of same type in the
|
||||
`FiniteElementSpace`. If `indices == nullptr`, assumes
|
||||
that the `FiniteElementSpace` is not mixed,
|
||||
@param[in] Q `Coefficient` or `VectorCoefficient`. */
|
||||
template <typename CeedOperatorInfo, typename CoeffType>
|
||||
void Assemble(CeedOperatorInfo &info,
|
||||
const mfem::FiniteElementSpace &trial_fes,
|
||||
const mfem::FiniteElementSpace &test_fes,
|
||||
const mfem::IntegrationRule &ir,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
CoeffType *Q)
|
||||
{
|
||||
Ceed ceed(internal::ceed);
|
||||
mfem::Mesh &mesh = *trial_fes.GetMesh();
|
||||
InitCoefficient(Q, mesh, irm, coeff, info.ctx);
|
||||
MFEM_VERIFY(!(!indices && mesh.GetNumGeometries(mesh.Dimension()) > 1),
|
||||
"Use ceed::MixedIntegrator on mixed meshes.");
|
||||
InitCoefficient(Q, mesh, ir, nelem, indices, coeff, info.ctx);
|
||||
bool const_coeff = coeff->IsConstant();
|
||||
std::string build_func = const_coeff ? info.build_func_const
|
||||
: info.build_func_quad;
|
||||
@@ -145,7 +203,6 @@ public:
|
||||
info.trial_op,
|
||||
info.test_op
|
||||
};
|
||||
CeedInt nqpts, nelem = mesh.GetNE();
|
||||
CeedInt dim = mesh.SpaceDimension();
|
||||
CeedInt trial_vdim = trial_fes.GetVDim();
|
||||
CeedInt test_vdim = test_fes.GetVDim();
|
||||
@@ -153,23 +210,23 @@ public:
|
||||
mesh.EnsureNodes();
|
||||
if ( &trial_fes == &test_fes )
|
||||
{
|
||||
InitBasisAndRestriction(trial_fes, irm, ceed,
|
||||
&trial_basis, &trial_restr);
|
||||
InitBasisAndRestriction(trial_fes, ir, nelem, indices,
|
||||
ceed, &trial_basis, &trial_restr);
|
||||
test_basis = trial_basis;
|
||||
test_restr = trial_restr;
|
||||
}
|
||||
else
|
||||
{
|
||||
InitBasisAndRestriction(trial_fes, irm, ceed,
|
||||
&trial_basis, &trial_restr);
|
||||
InitBasisAndRestriction(test_fes, irm, ceed,
|
||||
&test_basis, &test_restr);
|
||||
InitBasisAndRestriction(trial_fes, ir, nelem, indices,
|
||||
ceed, &trial_basis, &trial_restr);
|
||||
InitBasisAndRestriction(test_fes, ir, nelem, indices,
|
||||
ceed, &test_basis, &test_restr);
|
||||
}
|
||||
|
||||
const mfem::FiniteElementSpace *mesh_fes = mesh.GetNodalFESpace();
|
||||
MFEM_VERIFY(mesh_fes, "the Mesh has no nodal FE space");
|
||||
InitBasisAndRestriction(*mesh_fes, irm, ceed, &mesh_basis,
|
||||
&mesh_restr);
|
||||
InitBasisAndRestriction(*mesh_fes, ir, nelem, indices,
|
||||
ceed, &mesh_basis, &mesh_restr);
|
||||
|
||||
CeedInt trial_nqpts, test_nqpts;
|
||||
CeedBasisGetNumQuadraturePoints(trial_basis, &trial_nqpts);
|
||||
@@ -177,7 +234,7 @@ public:
|
||||
MFEM_VERIFY(trial_nqpts == test_nqpts,
|
||||
"Trial and test basis must have the same number of quadrature"
|
||||
" points.");
|
||||
nqpts = trial_nqpts;
|
||||
CeedInt nqpts = trial_nqpts;
|
||||
|
||||
const int qdatasize = op.qdatasize;
|
||||
InitStridedRestriction(*mesh_fes, nelem, nqpts, qdatasize,
|
||||
@@ -221,8 +278,10 @@ public:
|
||||
CeedOperatorCreate(ceed, build_qfunc, NULL, NULL, &build_oper);
|
||||
if (GridCoefficient *gridCoeff = dynamic_cast<GridCoefficient*>(coeff))
|
||||
{
|
||||
InitBasisAndRestriction(*gridCoeff->gf.FESpace(), irm, ceed,
|
||||
&gridCoeff->basis, &gridCoeff->restr);
|
||||
InitBasisAndRestriction(*gridCoeff->gf.FESpace(), ir,
|
||||
nelem, indices, ceed,
|
||||
&gridCoeff->basis,
|
||||
&gridCoeff->restr);
|
||||
CeedOperatorSetField(build_oper, "coeff", gridCoeff->restr,
|
||||
gridCoeff->basis, gridCoeff->coeffVector);
|
||||
}
|
||||
@@ -231,7 +290,8 @@ public:
|
||||
{
|
||||
const int ncomp = quadCoeff->ncomp;
|
||||
CeedInt strides[3] = {ncomp, 1, ncomp*nqpts};
|
||||
InitStridedRestriction(*mesh_fes, nelem, nqpts, ncomp, strides,
|
||||
InitStridedRestriction(*mesh.GetNodalFESpace(),
|
||||
nelem, nqpts, ncomp, strides,
|
||||
&quadCoeff->restr);
|
||||
CeedOperatorSetField(build_oper, "coeff", quadCoeff->restr,
|
||||
CEED_BASIS_COLLOCATED, quadCoeff->coeffVector);
|
||||
@@ -254,22 +314,17 @@ public:
|
||||
switch (op.trial_op)
|
||||
{
|
||||
case EvalMode::None:
|
||||
CeedQFunctionAddInput(apply_qfunc, "u", trial_vdim,
|
||||
CEED_EVAL_NONE);
|
||||
CeedQFunctionAddInput(apply_qfunc, "u", trial_vdim, CEED_EVAL_NONE);
|
||||
break;
|
||||
case EvalMode::Interp:
|
||||
CeedQFunctionAddInput(apply_qfunc, "u", trial_vdim,
|
||||
CEED_EVAL_INTERP);
|
||||
CeedQFunctionAddInput(apply_qfunc, "u", trial_vdim, CEED_EVAL_INTERP);
|
||||
break;
|
||||
case EvalMode::Grad:
|
||||
CeedQFunctionAddInput(apply_qfunc, "gu", trial_vdim*dim,
|
||||
CEED_EVAL_GRAD);
|
||||
CeedQFunctionAddInput(apply_qfunc, "gu", trial_vdim*dim, CEED_EVAL_GRAD);
|
||||
break;
|
||||
case EvalMode::InterpAndGrad:
|
||||
CeedQFunctionAddInput(apply_qfunc, "u", trial_vdim,
|
||||
CEED_EVAL_INTERP);
|
||||
CeedQFunctionAddInput(apply_qfunc, "gu", trial_vdim*dim,
|
||||
CEED_EVAL_GRAD);
|
||||
CeedQFunctionAddInput(apply_qfunc, "u", trial_vdim, CEED_EVAL_INTERP);
|
||||
CeedQFunctionAddInput(apply_qfunc, "gu", trial_vdim*dim, CEED_EVAL_GRAD);
|
||||
break;
|
||||
}
|
||||
// qdata
|
||||
@@ -278,22 +333,17 @@ public:
|
||||
switch (op.test_op)
|
||||
{
|
||||
case EvalMode::None:
|
||||
CeedQFunctionAddOutput(apply_qfunc, "v", test_vdim,
|
||||
CEED_EVAL_NONE);
|
||||
CeedQFunctionAddOutput(apply_qfunc, "v", test_vdim, CEED_EVAL_NONE);
|
||||
break;
|
||||
case EvalMode::Interp:
|
||||
CeedQFunctionAddOutput(apply_qfunc, "v", test_vdim,
|
||||
CEED_EVAL_INTERP);
|
||||
CeedQFunctionAddOutput(apply_qfunc, "v", test_vdim, CEED_EVAL_INTERP);
|
||||
break;
|
||||
case EvalMode::Grad:
|
||||
CeedQFunctionAddOutput(apply_qfunc, "gv", test_vdim*dim,
|
||||
CEED_EVAL_GRAD);
|
||||
CeedQFunctionAddOutput(apply_qfunc, "gv", test_vdim*dim, CEED_EVAL_GRAD);
|
||||
break;
|
||||
case EvalMode::InterpAndGrad:
|
||||
CeedQFunctionAddOutput(apply_qfunc, "v", test_vdim,
|
||||
CEED_EVAL_INTERP);
|
||||
CeedQFunctionAddOutput(apply_qfunc, "gv", test_vdim*dim,
|
||||
CEED_EVAL_GRAD);
|
||||
CeedQFunctionAddOutput(apply_qfunc, "v", test_vdim, CEED_EVAL_INTERP);
|
||||
CeedQFunctionAddOutput(apply_qfunc, "gv", test_vdim*dim, CEED_EVAL_GRAD);
|
||||
break;
|
||||
}
|
||||
CeedQFunctionSetContext(apply_qfunc, build_ctx);
|
||||
@@ -308,18 +358,14 @@ public:
|
||||
CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
|
||||
break;
|
||||
case EvalMode::Interp:
|
||||
CeedOperatorSetField(oper, "u", trial_restr, trial_basis,
|
||||
CEED_VECTOR_ACTIVE);
|
||||
CeedOperatorSetField(oper, "u", trial_restr, trial_basis, CEED_VECTOR_ACTIVE);
|
||||
break;
|
||||
case EvalMode::Grad:
|
||||
CeedOperatorSetField(oper, "gu", trial_restr, trial_basis,
|
||||
CEED_VECTOR_ACTIVE);
|
||||
CeedOperatorSetField(oper, "gu", trial_restr, trial_basis, CEED_VECTOR_ACTIVE);
|
||||
break;
|
||||
case EvalMode::InterpAndGrad:
|
||||
CeedOperatorSetField(oper, "u", trial_restr, trial_basis,
|
||||
CEED_VECTOR_ACTIVE);
|
||||
CeedOperatorSetField(oper, "gu", trial_restr, trial_basis,
|
||||
CEED_VECTOR_ACTIVE);
|
||||
CeedOperatorSetField(oper, "u", trial_restr, trial_basis, CEED_VECTOR_ACTIVE);
|
||||
CeedOperatorSetField(oper, "gu", trial_restr, trial_basis, CEED_VECTOR_ACTIVE);
|
||||
break;
|
||||
}
|
||||
// qdata
|
||||
@@ -333,18 +379,14 @@ public:
|
||||
CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
|
||||
break;
|
||||
case EvalMode::Interp:
|
||||
CeedOperatorSetField(oper, "v", test_restr, test_basis,
|
||||
CEED_VECTOR_ACTIVE);
|
||||
CeedOperatorSetField(oper, "v", test_restr, test_basis, CEED_VECTOR_ACTIVE);
|
||||
break;
|
||||
case EvalMode::Grad:
|
||||
CeedOperatorSetField(oper, "gv", test_restr, test_basis,
|
||||
CEED_VECTOR_ACTIVE);
|
||||
CeedOperatorSetField(oper, "gv", test_restr, test_basis, CEED_VECTOR_ACTIVE);
|
||||
break;
|
||||
case EvalMode::InterpAndGrad:
|
||||
CeedOperatorSetField(oper, "v", test_restr, test_basis,
|
||||
CEED_VECTOR_ACTIVE);
|
||||
CeedOperatorSetField(oper, "gv", test_restr, test_basis,
|
||||
CEED_VECTOR_ACTIVE);
|
||||
CeedOperatorSetField(oper, "v", test_restr, test_basis, CEED_VECTOR_ACTIVE);
|
||||
CeedOperatorSetField(oper, "gv", test_restr, test_basis, CEED_VECTOR_ACTIVE);
|
||||
break;
|
||||
}
|
||||
|
||||
@@ -402,6 +444,7 @@ protected:
|
||||
Coefficient *coeff;
|
||||
CeedQFunctionContext build_ctx;
|
||||
|
||||
public:
|
||||
MFIntegrator()
|
||||
: Operator(),
|
||||
trial_basis(nullptr), test_basis(nullptr), mesh_basis(nullptr),
|
||||
@@ -410,23 +453,51 @@ protected:
|
||||
apply_qfunc(nullptr), node_coords(nullptr),
|
||||
qdata(nullptr), coeff(nullptr), build_ctx(nullptr) { }
|
||||
|
||||
public:
|
||||
/** This method assembles the MFIntegrator.
|
||||
/** @brief This method assembles the `MFIntegrator` with the given
|
||||
`CeedOperatorInfo` @a info, an `mfem::FiniteElementSpace` @a fes, an
|
||||
`mfem::IntegrationRule` @a ir, and `mfem::Coefficient` or
|
||||
`mfem::VectorCoefficient` @a Q.
|
||||
The `CeedOperatorInfo` type is expected to inherit from `OperatorInfo`,
|
||||
and contain a `Context` type relevant to the qFunctions.
|
||||
|
||||
@param[in] info the `CeedOperatorInfo` describing the `CeedOperator`,
|
||||
the `CeedOperatorInfo` type is expected to inherit from
|
||||
`OperatorInfo` and contain a `Context` type relevant to
|
||||
the qFunctions.
|
||||
@param[in] fes the `FiniteElementSpace` for the form,
|
||||
@param[in] ir the `IntegrationRule` for the numerical integration,
|
||||
@param[in] Q `Coefficient` or `VectorCoefficient`. */
|
||||
@param[in] info is the structure describing the CeedOperator to assemble.
|
||||
@param[in] fes is the finite element space.
|
||||
@param[in] ir is the integration rule for the operator.
|
||||
@param[in] Q is the coefficient from the `Integrator`. */
|
||||
template <typename CeedOperatorInfo, typename CoeffType>
|
||||
void Assemble(CeedOperatorInfo &info,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
const mfem::IntegrationRule &ir,
|
||||
CoeffType *Q)
|
||||
{
|
||||
Assemble(info, fes, fes, irm, Q);
|
||||
Assemble(info, fes, ir, fes.GetNE(), nullptr, Q);
|
||||
}
|
||||
|
||||
/** @brief This method assembles the `MFIntegrator` with the given
|
||||
`CeedOperatorInfo` @a info, an `mfem::FiniteElementSpace` @a fes, an
|
||||
`mfem::IntegrationRule` @a ir, and `mfem::Coefficient` or
|
||||
`mfem::VectorCoefficient` @a Q for the elements given by the indices
|
||||
@a indices.
|
||||
The `CeedOperatorInfo` type is expected to inherit from `OperatorInfo`,
|
||||
and contain a `Context` type relevant to the qFunctions.
|
||||
|
||||
@param[in] info is the structure describing the CeedOperator to assemble.
|
||||
@param[in] fes is the finite element space.
|
||||
@param[in] ir is the integration rule for the operator.
|
||||
@param[in] nelem The number of elements.
|
||||
@param[in] indices The indices of the elements of same type in the
|
||||
`FiniteElementSpace`. If `indices == nullptr`, assumes
|
||||
that the `FiniteElementSpace` is not mixed.
|
||||
@param[in] Q is the coefficient from the `Integrator`. */
|
||||
template <typename CeedOperatorInfo, typename CoeffType>
|
||||
void Assemble(CeedOperatorInfo &info,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &ir,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
CoeffType *Q)
|
||||
{
|
||||
Assemble(info, fes, fes, ir, nelem, indices, Q);
|
||||
}
|
||||
|
||||
/** This method assembles the MFIntegrator for mixed forms.
|
||||
@@ -443,12 +514,40 @@ public:
|
||||
void Assemble(CeedOperatorInfo &info,
|
||||
const mfem::FiniteElementSpace &trial_fes,
|
||||
const mfem::FiniteElementSpace &test_fes,
|
||||
const mfem::IntegrationRule &irm,
|
||||
const mfem::IntegrationRule &ir,
|
||||
CoeffType *Q)
|
||||
{
|
||||
Assemble(info, trial_fes, test_fes, ir, trial_fes.GetNE(), nullptr, Q);
|
||||
}
|
||||
|
||||
/** This method assembles the MFIntegrator for mixed forms.
|
||||
|
||||
@param[in] info the `CeedOperatorInfo` describing the `CeedOperator`,
|
||||
the `CeedOperatorInfo` type is expected to inherit from
|
||||
`OperatorInfo` and contain a `Context` type relevant to
|
||||
the qFunctions.
|
||||
@param[in] trial_fes the trial `FiniteElementSpace` for the form,
|
||||
@param[in] test_fes the test `FiniteElementSpace` for the form,
|
||||
@param[in] ir the `IntegrationRule` for the numerical integration,
|
||||
@param[in] nelem The number of elements,
|
||||
@param[in] indices The indices of the elements of same type in the
|
||||
`FiniteElementSpace`. If `indices == nullptr`, assumes
|
||||
that the `FiniteElementSpace` is not mixed,
|
||||
@param[in] Q `Coefficient` or `VectorCoefficient`. */
|
||||
template <typename CeedOperatorInfo, typename CoeffType>
|
||||
void Assemble(CeedOperatorInfo &info,
|
||||
const mfem::FiniteElementSpace &trial_fes,
|
||||
const mfem::FiniteElementSpace &test_fes,
|
||||
const mfem::IntegrationRule &ir,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
CoeffType *Q)
|
||||
{
|
||||
Ceed ceed(internal::ceed);
|
||||
Mesh &mesh = *trial_fes.GetMesh();
|
||||
InitCoefficient(Q, mesh, irm, coeff, info.ctx);
|
||||
MFEM_VERIFY(!(!indices && mesh.GetNumGeometries(mesh.Dimension()) > 1),
|
||||
"Use ceed::MixedIntegrator on mixed meshes.");
|
||||
InitCoefficient(Q, mesh, ir, nelem, indices, coeff, info.ctx);
|
||||
bool const_coeff = coeff->IsConstant();
|
||||
std::string apply_func = const_coeff ? info.apply_func_mf_const
|
||||
: info.apply_func_mf_quad;
|
||||
@@ -459,7 +558,7 @@ public:
|
||||
info.trial_op,
|
||||
info.test_op
|
||||
};
|
||||
CeedInt nqpts, nelem = mesh.GetNE();
|
||||
|
||||
CeedInt dim = mesh.SpaceDimension();
|
||||
CeedInt trial_vdim = trial_fes.GetVDim();
|
||||
CeedInt test_vdim = test_fes.GetVDim();
|
||||
@@ -467,22 +566,22 @@ public:
|
||||
mesh.EnsureNodes();
|
||||
if ( &trial_fes == &test_fes )
|
||||
{
|
||||
InitBasisAndRestriction(trial_fes, irm, ceed,
|
||||
InitBasisAndRestriction(trial_fes, ir, nelem, indices, ceed,
|
||||
&trial_basis, &trial_restr);
|
||||
test_basis = trial_basis;
|
||||
test_restr = trial_restr;
|
||||
}
|
||||
else
|
||||
{
|
||||
InitBasisAndRestriction(trial_fes, irm, ceed,
|
||||
InitBasisAndRestriction(trial_fes, ir, nelem, indices, ceed,
|
||||
&trial_basis, &trial_restr);
|
||||
InitBasisAndRestriction(test_fes, irm, ceed,
|
||||
InitBasisAndRestriction(test_fes, ir, nelem, indices, ceed,
|
||||
&test_basis, &test_restr);
|
||||
}
|
||||
|
||||
const mfem::FiniteElementSpace *mesh_fes = mesh.GetNodalFESpace();
|
||||
MFEM_VERIFY(mesh_fes, "the Mesh has no nodal FE space");
|
||||
InitBasisAndRestriction(*mesh_fes, irm, ceed, &mesh_basis,
|
||||
InitBasisAndRestriction(*mesh_fes, ir, nelem, indices, ceed, &mesh_basis,
|
||||
&mesh_restr);
|
||||
|
||||
CeedInt trial_nqpts, test_nqpts;
|
||||
@@ -491,7 +590,7 @@ public:
|
||||
MFEM_VERIFY(trial_nqpts == test_nqpts,
|
||||
"Trial and test basis must have the same number of quadrature"
|
||||
" points.");
|
||||
nqpts = trial_nqpts;
|
||||
CeedInt nqpts = trial_nqpts;
|
||||
|
||||
InitVector(*mesh.GetNodes(), node_coords);
|
||||
|
||||
@@ -572,8 +671,8 @@ public:
|
||||
// coefficient
|
||||
if (GridCoefficient *gridCoeff = dynamic_cast<GridCoefficient*>(coeff))
|
||||
{
|
||||
InitBasisAndRestriction(*gridCoeff->gf.FESpace(), irm, ceed,
|
||||
&gridCoeff->basis, &gridCoeff->restr);
|
||||
InitBasisAndRestriction(*gridCoeff->gf.FESpace(), ir, nelem, indices,
|
||||
ceed, &gridCoeff->basis, &gridCoeff->restr);
|
||||
CeedOperatorSetField(oper, "coeff", gridCoeff->restr,
|
||||
gridCoeff->basis, gridCoeff->coeffVector);
|
||||
}
|
||||
|
||||
@@ -22,6 +22,8 @@
|
||||
#include "coefficient.hpp"
|
||||
// PA or MF Operator using libCEED.
|
||||
#include "integrator.hpp"
|
||||
// PA Operator supporting mixed finite element spaces.
|
||||
#include "mixed_integrator.hpp"
|
||||
// Utility functions
|
||||
#include "util.hpp"
|
||||
// Wrapper to include <ceed.h>
|
||||
|
||||
@@ -0,0 +1,126 @@
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_LIBCEED_MIXED_INTEGRATOR
|
||||
#define MFEM_LIBCEED_MIXED_INTEGRATOR
|
||||
|
||||
#include "ceed.hpp"
|
||||
#include "integrator.hpp"
|
||||
#include <unordered_map>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace ceed
|
||||
{
|
||||
|
||||
/** @brief This class wraps a `ceed::PAIntegrator` or `ceed::MFIntegrator` to
|
||||
support mixed finite element spaces. */
|
||||
template <typename CeedInteg>
|
||||
class MixedIntegrator : public ceed::Operator
|
||||
{
|
||||
#ifdef MFEM_USE_CEED
|
||||
using ElementKey = std::pair<int, int>; //< Element::Type, Order >
|
||||
struct key_hash
|
||||
{
|
||||
std::size_t operator()(const ElementKey& k) const
|
||||
{
|
||||
return k.first + 2 * k.second;
|
||||
}
|
||||
};
|
||||
using ElementsMap = std::unordered_map<const ElementKey, int*, key_hash>;
|
||||
std::vector<CeedInteg*> sub_ops;
|
||||
|
||||
public:
|
||||
template <typename Integrator, typename CeedOperatorInfo, typename CoeffType>
|
||||
void Assemble(const Integrator &integ,
|
||||
CeedOperatorInfo &info,
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
CoeffType *Q)
|
||||
{
|
||||
ElementsMap count;
|
||||
ElementsMap element_indices;
|
||||
ElementsMap offsets;
|
||||
|
||||
// Count the number of elements of each type
|
||||
for (int i = 0; i < fes.GetNE(); i++)
|
||||
{
|
||||
ElementKey key(fes.GetElementType(i), fes.GetElementOrder(i));
|
||||
auto value = count.find(key);
|
||||
if (value == count.end())
|
||||
{
|
||||
count[key] = new int(1);
|
||||
}
|
||||
else
|
||||
{
|
||||
(*value->second)++;
|
||||
}
|
||||
}
|
||||
|
||||
// Initialization of the arrays
|
||||
for ( const auto& value : count )
|
||||
{
|
||||
element_indices[value.first] = new int[*value.second];
|
||||
offsets[value.first] = new int(0);
|
||||
}
|
||||
|
||||
// Populates the indices arrays for each element type
|
||||
for (int i = 0; i < fes.GetNE(); i++)
|
||||
{
|
||||
ElementKey key(fes.GetElementType(i), fes.GetElementOrder(i));
|
||||
int &offset = *(offsets[key]);
|
||||
int* indices_array = element_indices[key];
|
||||
indices_array[offset] = i;
|
||||
offset++;
|
||||
}
|
||||
|
||||
// Create composite CeedOperator
|
||||
CeedCompositeOperatorCreate(internal::ceed, &oper);
|
||||
|
||||
// Create each sub-CeedOperator
|
||||
sub_ops.reserve(element_indices.size());
|
||||
for (const auto& value : element_indices)
|
||||
{
|
||||
const int* indices = value.second;
|
||||
const int first_index = indices[0];
|
||||
const mfem::FiniteElement &el = *fes.GetFE(first_index);
|
||||
auto &T = *fes.GetMesh()->GetElementTransformation(first_index);
|
||||
MFEM_ASSERT(!integ.GetIntegrationRule(),
|
||||
"Mixed mesh integrators should not have an"
|
||||
" IntegrationRule.");
|
||||
const IntegrationRule &ir = GetRule(integ, el, el, T);
|
||||
auto sub_op = new CeedInteg();
|
||||
int nelem = *count[value.first];
|
||||
sub_op->Assemble(info, fes, ir, nelem, indices, Q);
|
||||
sub_ops.push_back(sub_op);
|
||||
CeedCompositeOperatorAddSub(oper, sub_op->GetCeedOperator());
|
||||
}
|
||||
|
||||
const int ndofs = fes.GetVDim() * fes.GetNDofs();
|
||||
CeedVectorCreate(internal::ceed, ndofs, &u);
|
||||
CeedVectorCreate(internal::ceed, ndofs, &v);
|
||||
}
|
||||
|
||||
virtual ~MixedIntegrator()
|
||||
{
|
||||
for (auto sub_op : sub_ops)
|
||||
{
|
||||
delete sub_op;
|
||||
}
|
||||
}
|
||||
#endif
|
||||
};
|
||||
|
||||
} // namespace ceed
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_LIBCEED_MIXED_INTEGRATOR
|
||||
@@ -20,8 +20,8 @@ namespace ceed
|
||||
|
||||
#ifdef MFEM_USE_CEED
|
||||
|
||||
static void InitNonTensorRestriction(const mfem::FiniteElementSpace &fes,
|
||||
Ceed ceed, CeedElemRestriction *restr)
|
||||
static void InitNativeRestr(const mfem::FiniteElementSpace &fes,
|
||||
Ceed ceed, CeedElemRestriction *restr)
|
||||
{
|
||||
const mfem::FiniteElement *fe = fes.GetFE(0);
|
||||
const int P = fe->GetDof();
|
||||
@@ -31,77 +31,173 @@ static void InitNonTensorRestriction(const mfem::FiniteElementSpace &fes,
|
||||
const mfem::TensorBasisElement * tfe =
|
||||
dynamic_cast<const mfem::TensorBasisElement *>(fe);
|
||||
const int stride = compstride == 1 ? fes.GetVDim() : 1;
|
||||
if (tfe) // Lexicographic ordering using dof_map
|
||||
const mfem::Array<int>& dof_map = tfe->GetDofMap();
|
||||
|
||||
for (int i = 0; i < fes.GetNE(); i++)
|
||||
{
|
||||
const mfem::Array<int>& dof_map = tfe->GetDofMap();
|
||||
for (int i = 0; i < fes.GetNE(); i++)
|
||||
const int el_offset = P * i;
|
||||
for (int j = 0; j < P; j++)
|
||||
{
|
||||
const int el_offset = P * i;
|
||||
for (int j = 0; j < P; j++)
|
||||
{
|
||||
tp_el_dof[j+el_offset] = stride*el_dof.GetJ()[dof_map[j]+el_offset];
|
||||
}
|
||||
}
|
||||
}
|
||||
else // Native ordering
|
||||
{
|
||||
for (int e = 0; e < fes.GetNE(); e++)
|
||||
{
|
||||
for (int i = 0; i < P; i++)
|
||||
{
|
||||
tp_el_dof[i + e*P] = stride*el_dof.GetJ()[i + e*P];
|
||||
}
|
||||
tp_el_dof[j+el_offset] = stride*el_dof.GetJ()[dof_map[j]+el_offset];
|
||||
}
|
||||
}
|
||||
|
||||
CeedElemRestrictionCreate(ceed, fes.GetNE(), P, fes.GetVDim(),
|
||||
compstride, (fes.GetVDim())*(fes.GetNDofs()),
|
||||
CEED_MEM_HOST, CEED_COPY_VALUES,
|
||||
tp_el_dof.GetData(), restr);
|
||||
}
|
||||
|
||||
// TODO fuse Tensor and NonTensor Restriction
|
||||
void InitTensorRestriction(const mfem::FiniteElementSpace &fes,
|
||||
Ceed ceed, CeedElemRestriction *restr)
|
||||
static void InitLexicoRestr(const mfem::FiniteElementSpace &fes,
|
||||
Ceed ceed, CeedElemRestriction *restr)
|
||||
{
|
||||
const mfem::FiniteElement *fe = fes.GetFE(0);
|
||||
const int P = fe->GetDof();
|
||||
CeedInt compstride = fes.GetOrdering()==Ordering::byVDIM ? 1 : fes.GetNDofs();
|
||||
const mfem::Table &el_dof = fes.GetElementToDofTable();
|
||||
mfem::Array<int> tp_el_dof(el_dof.Size_of_connections());
|
||||
const int stride = compstride == 1 ? fes.GetVDim() : 1;
|
||||
|
||||
for (int e = 0; e < fes.GetNE(); e++)
|
||||
{
|
||||
for (int i = 0; i < P; i++)
|
||||
{
|
||||
tp_el_dof[i + e*P] = stride*el_dof.GetJ()[i + e*P];
|
||||
}
|
||||
}
|
||||
|
||||
CeedElemRestrictionCreate(ceed, fes.GetNE(), P, fes.GetVDim(),
|
||||
compstride, (fes.GetVDim())*(fes.GetNDofs()),
|
||||
CEED_MEM_HOST, CEED_COPY_VALUES,
|
||||
tp_el_dof.GetData(), restr);
|
||||
}
|
||||
|
||||
static void InitRestrictionImpl(const mfem::FiniteElementSpace &fes,
|
||||
Ceed ceed, CeedElemRestriction *restr)
|
||||
{
|
||||
const mfem::FiniteElement *fe = fes.GetFE(0);
|
||||
const mfem::TensorBasisElement * tfe =
|
||||
dynamic_cast<const mfem::TensorBasisElement *>(fe);
|
||||
MFEM_VERIFY(tfe, "invalid FE");
|
||||
if ( tfe && tfe->GetDofMap().Size()>0 ) // Native ordering using dof_map
|
||||
{
|
||||
InitNativeRestr(fes, ceed, restr);
|
||||
}
|
||||
else // Lexicographic ordering
|
||||
{
|
||||
InitLexicoRestr(fes, ceed, restr);
|
||||
}
|
||||
}
|
||||
|
||||
static void InitNativeRestrWithIndices(
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
Ceed ceed, CeedElemRestriction *restr)
|
||||
{
|
||||
const mfem::FiniteElement *fe = fes.GetFE(indices[0]);
|
||||
const int P = fe->GetDof();
|
||||
CeedInt compstride = fes.GetOrdering()==Ordering::byVDIM ? 1 : fes.GetNDofs();
|
||||
mfem::Array<int> tp_el_dof(nelem*P);
|
||||
const mfem::TensorBasisElement * tfe =
|
||||
dynamic_cast<const mfem::TensorBasisElement *>(fe);
|
||||
Array<int> dofs;
|
||||
const int stride = compstride == 1 ? fes.GetVDim() : 1;
|
||||
const mfem::Array<int>& dof_map = tfe->GetDofMap();
|
||||
|
||||
CeedInt compstride = fes.GetOrdering()==Ordering::byVDIM ? 1 : fes.GetNDofs();
|
||||
const mfem::Table &el_dof = fes.GetElementToDofTable();
|
||||
mfem::Array<int> tp_el_dof(el_dof.Size_of_connections());
|
||||
const int dof = fe->GetDof();
|
||||
const int stride = compstride == 1 ? fes.GetVDim() : 1;
|
||||
if (dof_map.Size()>0)
|
||||
for (int i = 0; i < nelem; i++)
|
||||
{
|
||||
for (int i = 0; i < fes.GetNE(); i++)
|
||||
const int elem_index = indices[i];
|
||||
fes.GetElementDofs(elem_index, dofs);
|
||||
const int el_offset = P * i;
|
||||
for (int j = 0; j < P; j++)
|
||||
{
|
||||
const int el_offset = dof * i;
|
||||
for (int j = 0; j < dof; j++)
|
||||
{
|
||||
tp_el_dof[j+el_offset] = stride*el_dof.GetJ()[dof_map[j]+el_offset];
|
||||
}
|
||||
tp_el_dof[j + el_offset] = stride*dofs[dof_map[j]];
|
||||
}
|
||||
}
|
||||
else // dof_map.Size == 0, means dof_map[j]==j;
|
||||
{
|
||||
for (int i = 0; i < fes.GetNE(); i++)
|
||||
{
|
||||
const int el_offset = dof * i;
|
||||
for (int j = 0; j < dof; j++)
|
||||
{
|
||||
tp_el_dof[j+el_offset] = stride*el_dof.GetJ()[j+el_offset];
|
||||
}
|
||||
}
|
||||
}
|
||||
CeedElemRestrictionCreate(ceed, fes.GetNE(), dof, fes.GetVDim(),
|
||||
|
||||
CeedElemRestrictionCreate(ceed, nelem, P, fes.GetVDim(),
|
||||
compstride, (fes.GetVDim())*(fes.GetNDofs()),
|
||||
CEED_MEM_HOST, CEED_COPY_VALUES,
|
||||
tp_el_dof.GetData(), restr);
|
||||
}
|
||||
|
||||
static void InitLexicoRestrWithIndices(
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
Ceed ceed, CeedElemRestriction *restr)
|
||||
{
|
||||
const mfem::FiniteElement *fe = fes.GetFE(indices[0]);
|
||||
const int P = fe->GetDof();
|
||||
CeedInt compstride = fes.GetOrdering()==Ordering::byVDIM ? 1 : fes.GetNDofs();
|
||||
mfem::Array<int> tp_el_dof(nelem*P);
|
||||
Array<int> dofs;
|
||||
const int stride = compstride == 1 ? fes.GetVDim() : 1;
|
||||
|
||||
for (int i = 0; i < nelem; i++)
|
||||
{
|
||||
const int elem_index = indices[i];
|
||||
fes.GetElementDofs(elem_index, dofs);
|
||||
const int el_offset = P * i;
|
||||
for (int j = 0; j < P; j++)
|
||||
{
|
||||
tp_el_dof[j + el_offset] = stride*dofs[j];
|
||||
}
|
||||
}
|
||||
|
||||
CeedElemRestrictionCreate(ceed, nelem, P, fes.GetVDim(),
|
||||
compstride, (fes.GetVDim())*(fes.GetNDofs()),
|
||||
CEED_MEM_HOST, CEED_COPY_VALUES,
|
||||
tp_el_dof.GetData(), restr);
|
||||
}
|
||||
|
||||
static void InitRestrictionWithIndicesImpl(
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
Ceed ceed, CeedElemRestriction *restr)
|
||||
{
|
||||
const mfem::FiniteElement *fe = fes.GetFE(indices[0]);
|
||||
const mfem::TensorBasisElement * tfe =
|
||||
dynamic_cast<const mfem::TensorBasisElement *>(fe);
|
||||
if ( tfe && tfe->GetDofMap().Size()>0 ) // Native ordering using dof_map
|
||||
{
|
||||
InitNativeRestrWithIndices(fes, nelem, indices, ceed, restr);
|
||||
}
|
||||
else // Lexicographic ordering
|
||||
{
|
||||
InitLexicoRestrWithIndices(fes, nelem, indices, ceed, restr);
|
||||
}
|
||||
}
|
||||
|
||||
static void InitCoeffRestrictionWithIndicesImpl(
|
||||
const mfem::FiniteElementSpace &fes,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
int nquads,
|
||||
int ncomp,
|
||||
Ceed ceed,
|
||||
CeedElemRestriction *restr)
|
||||
{
|
||||
mfem::Array<int> tp_el_dof(nelem*nquads);
|
||||
const int stride_quad = ncomp;
|
||||
const int stride_elem = ncomp*nquads;
|
||||
// TODO generalize to support different #quads
|
||||
for (int i = 0; i < nelem; i++)
|
||||
{
|
||||
const int elem_index = indices[i];
|
||||
const int el_offset = elem_index * stride_elem;
|
||||
for (int j = 0; j < nquads; j++)
|
||||
{
|
||||
tp_el_dof[j + nquads * i] = j * stride_quad + el_offset;
|
||||
}
|
||||
}
|
||||
CeedElemRestrictionCreate(ceed, nelem, nquads, ncomp, 1,
|
||||
ncomp*fes.GetNE()*nquads,
|
||||
CEED_MEM_HOST, CEED_COPY_VALUES,
|
||||
tp_el_dof.GetData(), restr);
|
||||
}
|
||||
|
||||
void InitStridedRestriction(const mfem::FiniteElementSpace &fes,
|
||||
CeedInt nelem, CeedInt nqpts, CeedInt qdatasize,
|
||||
const CeedInt *strides,
|
||||
@@ -136,17 +232,60 @@ void InitRestriction(const FiniteElementSpace &fes,
|
||||
RestrKey restr_key(&fes, nelem, P, ncomp, restr_type::Standard);
|
||||
auto restr_itr = mfem::internal::ceed_restr_map.find(restr_key);
|
||||
|
||||
// Init or retreive key values
|
||||
// Init or retrieve key values
|
||||
if (restr_itr == mfem::internal::ceed_restr_map.end())
|
||||
{
|
||||
if (UsesTensorBasis(fes))
|
||||
{
|
||||
InitTensorRestriction(fes, ceed, restr);
|
||||
}
|
||||
else
|
||||
{
|
||||
InitNonTensorRestriction(fes, ceed, restr);
|
||||
}
|
||||
InitRestrictionImpl(fes, ceed, restr);
|
||||
mfem::internal::ceed_restr_map[restr_key] = *restr;
|
||||
}
|
||||
else
|
||||
{
|
||||
*restr = restr_itr->second;
|
||||
}
|
||||
}
|
||||
|
||||
void InitRestrictionWithIndices(const FiniteElementSpace &fes,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
Ceed ceed,
|
||||
CeedElemRestriction *restr)
|
||||
{
|
||||
// Check for FES -> basis, restriction in hash tables
|
||||
const mfem::FiniteElement *fe = fes.GetFE(indices[0]);
|
||||
const int P = fe->GetDof();
|
||||
const int ncomp = fes.GetVDim();
|
||||
RestrKey restr_key(&fes, nelem, P, ncomp, restr_type::Standard);
|
||||
auto restr_itr = mfem::internal::ceed_restr_map.find(restr_key);
|
||||
|
||||
// Init or retrieve key values
|
||||
if (restr_itr == mfem::internal::ceed_restr_map.end())
|
||||
{
|
||||
InitRestrictionWithIndicesImpl(fes, nelem, indices, ceed, restr);
|
||||
mfem::internal::ceed_restr_map[restr_key] = *restr;
|
||||
}
|
||||
else
|
||||
{
|
||||
*restr = restr_itr->second;
|
||||
}
|
||||
}
|
||||
|
||||
void InitCoeffRestrictionWithIndices(const FiniteElementSpace &fes,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
int nquads,
|
||||
int ncomp,
|
||||
Ceed ceed,
|
||||
CeedElemRestriction *restr)
|
||||
{
|
||||
// Check for FES -> basis, restriction in hash tables
|
||||
RestrKey restr_key(&fes, nelem, nquads, ncomp, restr_type::Coeff);
|
||||
auto restr_itr = mfem::internal::ceed_restr_map.find(restr_key);
|
||||
|
||||
// Init or retrieve key values
|
||||
if (restr_itr == mfem::internal::ceed_restr_map.end())
|
||||
{
|
||||
InitCoeffRestrictionWithIndicesImpl(fes, nelem, indices, nquads, ncomp,
|
||||
ceed, restr);
|
||||
mfem::internal::ceed_restr_map[restr_key] = *restr;
|
||||
}
|
||||
else
|
||||
|
||||
@@ -21,37 +21,63 @@ namespace ceed
|
||||
{
|
||||
|
||||
#ifdef MFEM_USE_CEED
|
||||
/// @brief Initialize a strided CeedElemRestriction
|
||||
/** @a nelem is the number of elements,
|
||||
@a nqpts is the total number of quadrature points
|
||||
@a qdatasize is the number of data per quadrature point
|
||||
@a strides Array for strides between [nodes, components, elements].
|
||||
Data for node i, component j, element k can be found in the L-vector at
|
||||
index i*strides[0] + j*strides[1] + k*strides[2]. CEED_STRIDES_BACKEND may
|
||||
be used with vectors created by a Ceed backend. */
|
||||
void InitStridedRestriction(const mfem::FiniteElementSpace &fes,
|
||||
CeedInt nelem, CeedInt nqpts, CeedInt qdatasize,
|
||||
const CeedInt *strides,
|
||||
CeedElemRestriction *restr);
|
||||
/** @brief Initialize a CeedElemRestriction for non-mixed meshes.
|
||||
|
||||
/** @brief Initialize a CeedElemRestriction.
|
||||
*
|
||||
* @param[in] fes Input finite element space.
|
||||
* @param[in] ceed Input Ceed object.
|
||||
@param[out] restr The address of the initialized CeedElemRestriction object.
|
||||
@param[in] fes Input finite element space.
|
||||
@param[in] ceed Input Ceed object.
|
||||
@param[out] restr The address of the initialized CeedElemRestriction object.
|
||||
*/
|
||||
void InitRestriction(const FiniteElementSpace &fes,
|
||||
Ceed ceed,
|
||||
CeedElemRestriction *restr);
|
||||
|
||||
/** @brief Initialize a CeedElemRestriction.
|
||||
*
|
||||
* @param[in] fes Input finite element space.
|
||||
* @param[in] ceed Input Ceed object.
|
||||
@param[out] restr The address of the initialized CeedElemRestriction object.
|
||||
*/
|
||||
void InitTensorRestriction(const FiniteElementSpace &fes,
|
||||
Ceed ceed, CeedElemRestriction *restr);
|
||||
/** @brief Initialize a CeedElemRestriction for mixed meshes.
|
||||
|
||||
@param[in] fes The finite element space.
|
||||
@param[in] ceed The Ceed object.
|
||||
@param[in] nelem The number of elements.
|
||||
@param[in] indices The indices of the elements of same type in the
|
||||
`FiniteElementSpace`.
|
||||
@param[out] restr The `CeedElemRestriction` to initialize. */
|
||||
void InitRestrictionWithIndices(const FiniteElementSpace &fes,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
Ceed ceed,
|
||||
CeedElemRestriction *restr);
|
||||
|
||||
/** @brief Initialize a strided CeedElemRestriction
|
||||
|
||||
@param[in] nelem is the number of elements.
|
||||
@param[in] nqpts is the total number of quadrature points.
|
||||
@param[in] qdatasize is the number of data per quadrature point.
|
||||
@param[in] strides Array for strides between [nodes, components, elements].
|
||||
Data for node i, component j, element k can be found in the L-vector at
|
||||
index i*strides[0] + j*strides[1] + k*strides[2]. CEED_STRIDES_BACKEND may
|
||||
be used with vectors created by a Ceed backend.
|
||||
@param[out] restr The `CeedElemRestriction` to initialize. */
|
||||
void InitStridedRestriction(const mfem::FiniteElementSpace &fes,
|
||||
CeedInt nelem, CeedInt nqpts, CeedInt qdatasize,
|
||||
const CeedInt *strides,
|
||||
CeedElemRestriction *restr);
|
||||
|
||||
/** @brief Initialize a CeedElemRestriction for a mfem::Coefficient on a mixed
|
||||
mesh.
|
||||
|
||||
@param[in] fes The finite element space.
|
||||
@param[in] nelem is the number of elements.
|
||||
@param[in] indices The indices of the elements of same type in the
|
||||
`FiniteElementSpace`.
|
||||
@param[in] nquads is the total number of quadrature points
|
||||
@param[in] ncomp is the number of data per quadrature point
|
||||
@param[in] ceed The Ceed object.
|
||||
@param[out] restr The `CeedElemRestriction` to initialize. */
|
||||
void InitCoeffRestrictionWithIndices(const FiniteElementSpace &fes,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
int nquads,
|
||||
int ncomp,
|
||||
Ceed ceed,
|
||||
CeedElemRestriction *restr);
|
||||
|
||||
#endif
|
||||
|
||||
|
||||
@@ -99,6 +99,34 @@ void InitBasisAndRestriction(const FiniteElementSpace &fes,
|
||||
InitRestriction(fes, ceed, restr);
|
||||
}
|
||||
|
||||
void InitBasisAndRestrictionWithIndices(const FiniteElementSpace &fes,
|
||||
const IntegrationRule &irm,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
Ceed ceed, CeedBasis *basis,
|
||||
CeedElemRestriction *restr)
|
||||
{
|
||||
InitBasisWithIndices(fes, irm, nelem, indices, ceed, basis);
|
||||
InitRestrictionWithIndices(fes, nelem, indices, ceed, restr);
|
||||
}
|
||||
|
||||
void InitBasisAndRestriction(const FiniteElementSpace &fes,
|
||||
const IntegrationRule &irm,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
Ceed ceed, CeedBasis *basis,
|
||||
CeedElemRestriction *restr)
|
||||
{
|
||||
if (indices)
|
||||
{
|
||||
InitBasisAndRestrictionWithIndices(fes,irm,nelem,indices,ceed,basis,restr);
|
||||
}
|
||||
else
|
||||
{
|
||||
InitBasisAndRestriction(fes,irm,ceed,basis,restr);
|
||||
}
|
||||
}
|
||||
|
||||
// Assumes a tensor-product operator with one active field
|
||||
int CeedOperatorGetActiveField(CeedOperator oper, CeedOperatorField *field)
|
||||
{
|
||||
@@ -158,6 +186,66 @@ int CeedOperatorGetActiveField(CeedOperator oper, CeedOperatorField *field)
|
||||
return 0;
|
||||
}
|
||||
|
||||
template <>
|
||||
const IntegrationRule & GetRule<MassIntegrator>(
|
||||
const MassIntegrator &integ,
|
||||
const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &trans)
|
||||
{
|
||||
return MassIntegrator::GetRule(trial_fe, test_fe, trans);
|
||||
}
|
||||
|
||||
template <>
|
||||
const IntegrationRule & GetRule<VectorMassIntegrator>(
|
||||
const VectorMassIntegrator &integ,
|
||||
const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &trans)
|
||||
{
|
||||
return MassIntegrator::GetRule(trial_fe, test_fe, trans);
|
||||
}
|
||||
|
||||
template <>
|
||||
const IntegrationRule & GetRule<ConvectionIntegrator>(
|
||||
const ConvectionIntegrator &integ,
|
||||
const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &trans)
|
||||
{
|
||||
return ConvectionIntegrator::GetRule(trial_fe, test_fe, trans);
|
||||
}
|
||||
|
||||
template <>
|
||||
const IntegrationRule & GetRule<VectorConvectionNLFIntegrator>(
|
||||
const VectorConvectionNLFIntegrator &integ,
|
||||
const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &trans)
|
||||
{
|
||||
return VectorConvectionNLFIntegrator::GetRule(trial_fe, trans);
|
||||
}
|
||||
|
||||
template <>
|
||||
const IntegrationRule & GetRule<DiffusionIntegrator>(
|
||||
const DiffusionIntegrator &integ,
|
||||
const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &trans)
|
||||
{
|
||||
return DiffusionIntegrator::GetRule(trial_fe, test_fe);
|
||||
}
|
||||
|
||||
template <>
|
||||
const IntegrationRule & GetRule<VectorDiffusionIntegrator>(
|
||||
const VectorDiffusionIntegrator &integ,
|
||||
const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &trans)
|
||||
{
|
||||
return DiffusionIntegrator::GetRule(trial_fe, test_fe);
|
||||
}
|
||||
|
||||
std::string ceed_path;
|
||||
|
||||
const std::string &GetCeedPath()
|
||||
|
||||
@@ -26,7 +26,9 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class FiniteElement;
|
||||
class FiniteElementSpace;
|
||||
class ElementTransformation;
|
||||
class IntegrationRule;
|
||||
class Vector;
|
||||
|
||||
@@ -55,15 +57,51 @@ void RemoveBasisAndRestriction(const mfem::FiniteElementSpace *fes);
|
||||
/// Initialize a CeedVector from an mfem::Vector
|
||||
void InitVector(const mfem::Vector &v, CeedVector &cv);
|
||||
|
||||
/** Initialize a CeedBasis and a CeedElemRestriction based on an
|
||||
mfem::FiniteElementSpace @a fes, and an mfem::IntegrationRule @a ir. */
|
||||
/** @brief Initialize a CeedBasis and a CeedElemRestriction based on an
|
||||
mfem::FiniteElementSpace @a fes, and an mfem::IntegrationRule @a ir.
|
||||
|
||||
@param[in] fes The finite element space.
|
||||
@param[in] ir The integration rule.
|
||||
@param[in] ceed The Ceed object.
|
||||
@param[out] basis The `CeedBasis` to initialize.
|
||||
@param[out] restr The `CeedElemRestriction` to initialize.
|
||||
|
||||
@warning Only for non-mixed finite element spaces. */
|
||||
void InitBasisAndRestriction(const mfem::FiniteElementSpace &fes,
|
||||
const mfem::IntegrationRule &ir,
|
||||
Ceed ceed, CeedBasis *basis,
|
||||
CeedElemRestriction *restr);
|
||||
|
||||
/** @brief Initialize a CeedBasis and a CeedElemRestriction based on an
|
||||
mfem::FiniteElementSpace @a fes, and an mfem::IntegrationRule @a ir,
|
||||
and a list of @a nelem elements of indices @a indices.
|
||||
|
||||
@param[in] fes The finite element space.
|
||||
@param[in] ir The integration rule.
|
||||
@param[in] nelem The number of elements.
|
||||
@param[in] indices The indices of the elements of same type in the
|
||||
`FiniteElementSpace`. If `indices == nullptr`, assumes
|
||||
that the `FiniteElementSpace` is not mixed.
|
||||
@param[in] ceed The Ceed object.
|
||||
@param[out] basis The `CeedBasis` to initialize.
|
||||
@param[out] restr The `CeedElemRestriction` to initialize. */
|
||||
void InitBasisAndRestriction(const FiniteElementSpace &fes,
|
||||
const IntegrationRule &ir,
|
||||
int nelem,
|
||||
const int* indices,
|
||||
Ceed ceed, CeedBasis *basis,
|
||||
CeedElemRestriction *restr);
|
||||
|
||||
int CeedOperatorGetActiveField(CeedOperator oper, CeedOperatorField *field);
|
||||
|
||||
|
||||
template <typename Integrator>
|
||||
const IntegrationRule & GetRule(
|
||||
const Integrator &integ,
|
||||
const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans);
|
||||
|
||||
/// Return the path to the libCEED q-function headers.
|
||||
const std::string &GetCeedPath();
|
||||
|
||||
@@ -87,7 +125,7 @@ struct BasisHash
|
||||
};
|
||||
using BasisMap = std::unordered_map<const BasisKey, CeedBasis, BasisHash>;
|
||||
|
||||
enum restr_type {Standard, Strided};
|
||||
enum restr_type {Standard, Strided, Coeff};
|
||||
|
||||
// Hash table for CeedElemRestriction
|
||||
using RestrKey =
|
||||
@@ -117,6 +155,8 @@ namespace internal
|
||||
{
|
||||
|
||||
#ifdef MFEM_USE_CEED
|
||||
/** @warning These maps have a tendency to create bugs when adding new "types"
|
||||
of CeedBasis and CeedElemRestriction. */
|
||||
extern ceed::BasisMap ceed_basis_map;
|
||||
extern ceed::RestrMap ceed_restr_map;
|
||||
#endif
|
||||
|
||||
@@ -633,7 +633,7 @@ AlgebraicSpaceHierarchy::AlgebraicSpaceHierarchy(FiniteElementSpace &fes)
|
||||
current_order = order;
|
||||
|
||||
Ceed ceed = internal::ceed;
|
||||
InitTensorRestriction(fes, ceed, &fine_er);
|
||||
InitRestriction(fes, ceed, &fine_er);
|
||||
CeedElemRestriction er = fine_er;
|
||||
|
||||
int dim = fes.GetMesh()->Dimension();
|
||||
@@ -745,7 +745,7 @@ ParAlgebraicCoarseSpace::ParAlgebraicCoarseSpace(
|
||||
ldof_group.SetSize(lsize);
|
||||
ldof_group = 0;
|
||||
|
||||
GroupTopology &group_topo = gc_fine->GetGroupTopology();
|
||||
const GroupTopology &group_topo = gc_fine->GetGroupTopology();
|
||||
gc = new GroupCommunicator(group_topo);
|
||||
Table &group_ldof = gc->GroupLDofTable();
|
||||
group_ldof.MakeI(group_ldof_fine.Size());
|
||||
@@ -822,11 +822,11 @@ HypreParMatrix *ParAlgebraicCoarseSpace::GetProlongationHypreParMatrix()
|
||||
|
||||
ParMesh *pmesh = dynamic_cast<ParMesh*>(mesh);
|
||||
MFEM_VERIFY(pmesh != NULL, "");
|
||||
Array<HYPRE_Int> dof_offsets, tdof_offsets, tdof_nb_offsets;
|
||||
Array<HYPRE_Int> *offsets[2] = {&dof_offsets, &tdof_offsets};
|
||||
Array<HYPRE_BigInt> dof_offsets, tdof_offsets, tdof_nb_offsets;
|
||||
Array<HYPRE_BigInt> *offsets[2] = {&dof_offsets, &tdof_offsets};
|
||||
int lsize = P->Height();
|
||||
int ltsize = P->Width();
|
||||
HYPRE_Int loc_sizes[2] = {lsize, ltsize};
|
||||
HYPRE_BigInt loc_sizes[2] = {lsize, ltsize};
|
||||
pmesh->GenerateOffsets(2, loc_sizes, offsets);
|
||||
|
||||
MPI_Comm comm = pmesh->GetComm();
|
||||
@@ -870,12 +870,12 @@ HypreParMatrix *ParAlgebraicCoarseSpace::GetProlongationHypreParMatrix()
|
||||
HYPRE_Int *j_offd = Memory<HYPRE_Int>(lsize-ltsize);
|
||||
int offd_counter;
|
||||
|
||||
HYPRE_Int *cmap = Memory<HYPRE_Int>(lsize-ltsize);
|
||||
HYPRE_BigInt *cmap = Memory<HYPRE_BigInt>(lsize-ltsize);
|
||||
|
||||
HYPRE_Int *col_starts = tdof_offsets;
|
||||
HYPRE_Int *row_starts = dof_offsets;
|
||||
HYPRE_BigInt *col_starts = tdof_offsets;
|
||||
HYPRE_BigInt *row_starts = dof_offsets;
|
||||
|
||||
Array<Pair<HYPRE_Int, int> > cmap_j_offd(lsize-ltsize);
|
||||
Array<Pair<HYPRE_BigInt, int> > cmap_j_offd(lsize-ltsize);
|
||||
|
||||
i_diag[0] = i_offd[0] = 0;
|
||||
diag_counter = offd_counter = 0;
|
||||
@@ -909,7 +909,7 @@ HypreParMatrix *ParAlgebraicCoarseSpace::GetProlongationHypreParMatrix()
|
||||
i_offd[i_ldof+1] = offd_counter;
|
||||
}
|
||||
|
||||
SortPairs<HYPRE_Int, int>(cmap_j_offd, offd_counter);
|
||||
SortPairs<HYPRE_BigInt, int>(cmap_j_offd, offd_counter);
|
||||
|
||||
for (int i = 0; i < offd_counter; i++)
|
||||
{
|
||||
|
||||
@@ -134,7 +134,6 @@ public:
|
||||
}
|
||||
~AlgebraicSpaceHierarchy()
|
||||
{
|
||||
CeedElemRestrictionDestroy(&fine_er);
|
||||
for (int i=0; i<R_tr.Size(); ++i)
|
||||
{
|
||||
delete R_tr[i];
|
||||
|
||||
+316
-3
@@ -48,6 +48,31 @@ ElementTransformation *RefinedToCoarse(
|
||||
return coarse_T;
|
||||
}
|
||||
|
||||
void Coefficient::Project(QuadratureFunction &qf)
|
||||
{
|
||||
QuadratureSpaceBase &qspace = *qf.GetSpace();
|
||||
const int ne = qspace.GetNE();
|
||||
Vector values;
|
||||
for (int iel = 0; iel < ne; ++iel)
|
||||
{
|
||||
qf.GetValues(iel, values);
|
||||
const IntegrationRule &ir = qspace.GetIntRule(iel);
|
||||
ElementTransformation& T = *qspace.GetTransformation(iel);
|
||||
for (int iq = 0; iq < ir.Size(); ++iq)
|
||||
{
|
||||
const IntegrationPoint &ip = ir[iq];
|
||||
T.SetIntPoint(&ip);
|
||||
const int iq_p = qspace.GetPermutedIndex(iel, iq);
|
||||
values[iq_p] = Eval(T, ip);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void ConstantCoefficient::Project(QuadratureFunction &qf)
|
||||
{
|
||||
qf = constant;
|
||||
}
|
||||
|
||||
double PWConstCoefficient::Eval(ElementTransformation & T,
|
||||
const IntegrationPoint & ip)
|
||||
{
|
||||
@@ -135,6 +160,11 @@ double GridFunctionCoefficient::Eval (ElementTransformation &T,
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunctionCoefficient::Project(QuadratureFunction &qf)
|
||||
{
|
||||
qf.ProjectGridFunction(*GridF);
|
||||
}
|
||||
|
||||
void TransformedCoefficient::SetTime(double t)
|
||||
{
|
||||
if (Q1) { Q1->SetTime(t); }
|
||||
@@ -203,6 +233,29 @@ void VectorCoefficient::Eval(DenseMatrix &M, ElementTransformation &T,
|
||||
}
|
||||
}
|
||||
|
||||
void VectorCoefficient::Project(QuadratureFunction &qf)
|
||||
{
|
||||
MFEM_VERIFY(vdim == qf.GetVDim(), "Wrong sizes.");
|
||||
QuadratureSpaceBase &qspace = *qf.GetSpace();
|
||||
const int ne = qspace.GetNE();
|
||||
DenseMatrix values;
|
||||
Vector col;
|
||||
for (int iel = 0; iel < ne; ++iel)
|
||||
{
|
||||
qf.GetValues(iel, values);
|
||||
const IntegrationRule &ir = qspace.GetIntRule(iel);
|
||||
ElementTransformation& T = *qspace.GetTransformation(iel);
|
||||
for (int iq = 0; iq < ir.Size(); ++iq)
|
||||
{
|
||||
const IntegrationPoint &ip = ir[iq];
|
||||
T.SetIntPoint(&ip);
|
||||
const int iq_p = qspace.GetPermutedIndex(iel, iq);
|
||||
values.GetColumnReference(iq_p, col);
|
||||
Eval(col, T, ip);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void PWVectorCoefficient::InitMap(const Array<int> & attr,
|
||||
const Array<VectorCoefficient*> & coefs)
|
||||
{
|
||||
@@ -368,6 +421,11 @@ void VectorGridFunctionCoefficient::Eval(
|
||||
}
|
||||
}
|
||||
|
||||
void VectorGridFunctionCoefficient::Project(QuadratureFunction &qf)
|
||||
{
|
||||
qf.ProjectGridFunction(*GridFunc);
|
||||
}
|
||||
|
||||
GradientGridFunctionCoefficient::GradientGridFunctionCoefficient (
|
||||
const GridFunction *gf)
|
||||
: VectorCoefficient((gf) ?
|
||||
@@ -517,6 +575,29 @@ void VectorRestrictedCoefficient::Eval(
|
||||
}
|
||||
}
|
||||
|
||||
void MatrixCoefficient::Project(QuadratureFunction &qf, bool transpose)
|
||||
{
|
||||
MFEM_VERIFY(qf.GetVDim() == height*width, "Wrong sizes.");
|
||||
QuadratureSpaceBase &qspace = *qf.GetSpace();
|
||||
const int ne = qspace.GetNE();
|
||||
DenseMatrix values, matrix;
|
||||
for (int iel = 0; iel < ne; ++iel)
|
||||
{
|
||||
qf.GetValues(iel, values);
|
||||
const IntegrationRule &ir = qspace.GetIntRule(iel);
|
||||
ElementTransformation& T = *qspace.GetTransformation(iel);
|
||||
for (int iq = 0; iq < ir.Size(); ++iq)
|
||||
{
|
||||
const IntegrationPoint &ip = ir[iq];
|
||||
T.SetIntPoint(&ip);
|
||||
const int iq_p = qspace.GetPermutedIndex(iel, iq);
|
||||
matrix.UseExternalData(&values(0, iq_p), height, width);
|
||||
Eval(matrix, T, ip);
|
||||
if (transpose) { matrix.Transpose(); }
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void PWMatrixCoefficient::InitMap(const Array<int> & attr,
|
||||
const Array<MatrixCoefficient*> & coefs)
|
||||
{
|
||||
@@ -669,6 +750,31 @@ void MatrixFunctionCoefficient::EvalSymmetric(Vector &K,
|
||||
}
|
||||
}
|
||||
|
||||
void SymmetricMatrixCoefficient::ProjectSymmetric(QuadratureFunction &qf)
|
||||
{
|
||||
const int vdim = qf.GetVDim();
|
||||
MFEM_VERIFY(vdim == height*(height+1)/2, "Wrong sizes.");
|
||||
|
||||
QuadratureSpaceBase &qspace = *qf.GetSpace();
|
||||
const int ne = qspace.GetNE();
|
||||
DenseMatrix values;
|
||||
DenseSymmetricMatrix matrix;
|
||||
for (int iel = 0; iel < ne; ++iel)
|
||||
{
|
||||
qf.GetValues(iel, values);
|
||||
const IntegrationRule &ir = qspace.GetIntRule(iel);
|
||||
ElementTransformation& T = *qspace.GetTransformation(iel);
|
||||
for (int iq = 0; iq < ir.Size(); ++iq)
|
||||
{
|
||||
const IntegrationPoint &ip = ir[iq];
|
||||
T.SetIntPoint(&ip);
|
||||
matrix.UseExternalData(&values(0, iq), vdim);
|
||||
Eval(matrix, T, ip);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void SymmetricMatrixCoefficient::Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
@@ -1437,12 +1543,12 @@ void VectorQuadratureFunctionCoefficient::Eval(Vector &V,
|
||||
|
||||
if (index == 0 && vdim == QuadF.GetVDim())
|
||||
{
|
||||
QuadF.GetElementValues(T.ElementNo, ip.index, V);
|
||||
QuadF.GetValues(T.ElementNo, ip.index, V);
|
||||
}
|
||||
else
|
||||
{
|
||||
Vector temp;
|
||||
QuadF.GetElementValues(T.ElementNo, ip.index, temp);
|
||||
QuadF.GetValues(T.ElementNo, ip.index, temp);
|
||||
V.SetSize(vdim);
|
||||
for (int i = 0; i < vdim; i++)
|
||||
{
|
||||
@@ -1453,6 +1559,11 @@ void VectorQuadratureFunctionCoefficient::Eval(Vector &V,
|
||||
return;
|
||||
}
|
||||
|
||||
void VectorQuadratureFunctionCoefficient::Project(QuadratureFunction &qf)
|
||||
{
|
||||
qf = QuadF;
|
||||
}
|
||||
|
||||
QuadratureFunctionCoefficient::QuadratureFunctionCoefficient(
|
||||
QuadratureFunction &qf) : QuadF(qf)
|
||||
{
|
||||
@@ -1464,8 +1575,210 @@ double QuadratureFunctionCoefficient::Eval(ElementTransformation &T,
|
||||
{
|
||||
QuadF.HostRead();
|
||||
Vector temp(1);
|
||||
QuadF.GetElementValues(T.ElementNo, ip.index, temp);
|
||||
QuadF.GetValues(T.ElementNo, ip.index, temp);
|
||||
return temp[0];
|
||||
}
|
||||
|
||||
void QuadratureFunctionCoefficient::Project(QuadratureFunction &qf)
|
||||
{
|
||||
qf = QuadF;
|
||||
}
|
||||
|
||||
|
||||
CoefficientVector::CoefficientVector(
|
||||
QuadratureSpaceBase &qs_, CoefficientStorage storage_)
|
||||
: Vector(), storage(storage_), vdim(0), qs(qs_), qf(NULL)
|
||||
{
|
||||
UseDevice(true);
|
||||
}
|
||||
|
||||
CoefficientVector::CoefficientVector(Coefficient *coeff,
|
||||
QuadratureSpaceBase &qs_,
|
||||
CoefficientStorage storage_)
|
||||
: CoefficientVector(qs_, storage_)
|
||||
{
|
||||
if (coeff == NULL)
|
||||
{
|
||||
SetConstant(1.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
Project(*coeff);
|
||||
}
|
||||
}
|
||||
|
||||
CoefficientVector::CoefficientVector(Coefficient &coeff,
|
||||
QuadratureSpaceBase &qs_,
|
||||
CoefficientStorage storage_)
|
||||
: CoefficientVector(qs_, storage_)
|
||||
{
|
||||
Project(coeff);
|
||||
}
|
||||
|
||||
CoefficientVector::CoefficientVector(VectorCoefficient &coeff,
|
||||
QuadratureSpaceBase &qs_,
|
||||
CoefficientStorage storage_)
|
||||
: CoefficientVector(qs_, storage_)
|
||||
{
|
||||
Project(coeff);
|
||||
}
|
||||
|
||||
CoefficientVector::CoefficientVector(MatrixCoefficient &coeff,
|
||||
QuadratureSpaceBase &qs_,
|
||||
CoefficientStorage storage_)
|
||||
: CoefficientVector(qs_, storage_)
|
||||
{
|
||||
Project(coeff);
|
||||
}
|
||||
|
||||
void CoefficientVector::Project(Coefficient &coeff)
|
||||
{
|
||||
vdim = 1;
|
||||
if (auto *const_coeff = dynamic_cast<ConstantCoefficient*>(&coeff))
|
||||
{
|
||||
SetConstant(const_coeff->constant);
|
||||
}
|
||||
else if (auto *qf_coeff = dynamic_cast<QuadratureFunctionCoefficient*>(&coeff))
|
||||
{
|
||||
MakeRef(qf_coeff->GetQuadFunction());
|
||||
}
|
||||
else
|
||||
{
|
||||
if (qf == nullptr) { qf = new QuadratureFunction(qs); }
|
||||
qf->SetVDim(1);
|
||||
coeff.Project(*qf);
|
||||
Vector::MakeRef(*qf, 0, qf->Size());
|
||||
}
|
||||
}
|
||||
|
||||
void CoefficientVector::Project(VectorCoefficient &coeff)
|
||||
{
|
||||
vdim = coeff.GetVDim();
|
||||
if (auto *const_coeff = dynamic_cast<VectorConstantCoefficient*>(&coeff))
|
||||
{
|
||||
SetConstant(const_coeff->GetVec());
|
||||
}
|
||||
else if (auto *qf_coeff =
|
||||
dynamic_cast<VectorQuadratureFunctionCoefficient*>(&coeff))
|
||||
{
|
||||
MakeRef(qf_coeff->GetQuadFunction());
|
||||
}
|
||||
else
|
||||
{
|
||||
if (qf == nullptr) { qf = new QuadratureFunction(qs, vdim); }
|
||||
qf->SetVDim(vdim);
|
||||
coeff.Project(*qf);
|
||||
Vector::MakeRef(*qf, 0, qf->Size());
|
||||
}
|
||||
}
|
||||
|
||||
void CoefficientVector::Project(MatrixCoefficient &coeff, bool transpose)
|
||||
{
|
||||
if (auto *const_coeff = dynamic_cast<MatrixConstantCoefficient*>(&coeff))
|
||||
{
|
||||
SetConstant(const_coeff->GetMatrix());
|
||||
}
|
||||
else if (auto *const_sym_coeff =
|
||||
dynamic_cast<SymmetricMatrixConstantCoefficient*>(&coeff))
|
||||
{
|
||||
SetConstant(const_sym_coeff->GetMatrix());
|
||||
}
|
||||
else
|
||||
{
|
||||
auto *sym_coeff = dynamic_cast<SymmetricMatrixCoefficient*>(&coeff);
|
||||
const bool sym = sym_coeff && (storage & CoefficientStorage::SYMMETRIC);
|
||||
const int height = coeff.GetHeight();
|
||||
const int width = coeff.GetWidth();
|
||||
vdim = sym ? height*(height + 1)/2 : width*height;
|
||||
|
||||
if (qf == nullptr) { qf = new QuadratureFunction(qs, vdim); }
|
||||
qf->SetVDim(vdim);
|
||||
if (sym) { sym_coeff->ProjectSymmetric(*qf); }
|
||||
else { coeff.Project(*qf, transpose); }
|
||||
Vector::MakeRef(*qf, 0, qf->Size());
|
||||
}
|
||||
}
|
||||
|
||||
void CoefficientVector::ProjectTranspose(MatrixCoefficient &coeff)
|
||||
{
|
||||
Project(coeff, true);
|
||||
}
|
||||
|
||||
void CoefficientVector::MakeRef(const QuadratureFunction &qf_)
|
||||
{
|
||||
vdim = qf_.GetVDim();
|
||||
const QuadratureSpaceBase *qs2 = qf_.GetSpace();
|
||||
MFEM_CONTRACT_VAR(qs2); // qs2 used only for asserts
|
||||
MFEM_VERIFY(qs2 != NULL, "Invalid QuadratureSpace.")
|
||||
MFEM_VERIFY(qs2->GetMesh() == qs.GetMesh(), "Meshes differ.");
|
||||
MFEM_VERIFY(qs2->GetOrder() == qs.GetOrder(), "Orders differ.");
|
||||
Vector::MakeRef(const_cast<QuadratureFunction&>(qf_), 0, qf_.Size());
|
||||
}
|
||||
|
||||
void CoefficientVector::SetConstant(double constant)
|
||||
{
|
||||
const int nq = (storage & CoefficientStorage::CONSTANTS) ? 1 : qs.GetSize();
|
||||
vdim = 1;
|
||||
SetSize(nq);
|
||||
Vector::operator=(constant);
|
||||
}
|
||||
|
||||
void CoefficientVector::SetConstant(const Vector &constant)
|
||||
{
|
||||
const int nq = (storage & CoefficientStorage::CONSTANTS) ? 1 : qs.GetSize();
|
||||
vdim = constant.Size();
|
||||
SetSize(nq*vdim);
|
||||
for (int iq = 0; iq < nq; ++iq)
|
||||
{
|
||||
for (int vd = 0; vd<vdim; ++vd)
|
||||
{
|
||||
(*this)[vd + iq*vdim] = constant[vd];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void CoefficientVector::SetConstant(const DenseMatrix &constant)
|
||||
{
|
||||
const int nq = (storage & CoefficientStorage::CONSTANTS) ? 1 : qs.GetSize();
|
||||
const int width = constant.Width();
|
||||
const int height = constant.Height();
|
||||
vdim = width*height;
|
||||
SetSize(nq*vdim);
|
||||
for (int iq = 0; iq < nq; ++iq)
|
||||
{
|
||||
for (int j = 0; j < width; ++j)
|
||||
{
|
||||
for (int i = 0; i < height; ++i)
|
||||
{
|
||||
(*this)[i + j*height + iq*vdim] = constant(i, j);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void CoefficientVector::SetConstant(const DenseSymmetricMatrix &constant)
|
||||
{
|
||||
const int nq = (storage & CoefficientStorage::CONSTANTS) ? 1 : qs.GetSize();
|
||||
const int height = constant.Height();
|
||||
const bool sym = storage & CoefficientStorage::SYMMETRIC;
|
||||
vdim = sym ? height*(height + 1)/2 : height*height;
|
||||
SetSize(nq*vdim);
|
||||
for (int iq = 0; iq < nq; ++iq)
|
||||
{
|
||||
for (int vd = 0; vd < vdim; ++vd)
|
||||
{
|
||||
const double value = sym ? constant.GetData()[vd] : constant(vd % height,
|
||||
vd / height);
|
||||
(*this)[vd + iq*vdim] = value;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
int CoefficientVector::GetVDim() const { return vdim; }
|
||||
|
||||
CoefficientVector::~CoefficientVector()
|
||||
{
|
||||
delete qf;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+171
-3
@@ -23,6 +23,8 @@ namespace mfem
|
||||
{
|
||||
|
||||
class Mesh;
|
||||
class QuadratureSpaceBase;
|
||||
class QuadratureFunction;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
class ParMesh;
|
||||
@@ -70,6 +72,10 @@ public:
|
||||
return Eval(T, ip);
|
||||
}
|
||||
|
||||
/// @brief Fill the QuadratureFunction @a qf by evaluating the coefficient at
|
||||
/// the quadrature points.
|
||||
virtual void Project(QuadratureFunction &qf);
|
||||
|
||||
virtual ~Coefficient() { }
|
||||
};
|
||||
|
||||
@@ -87,6 +93,9 @@ public:
|
||||
virtual double Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{ return (constant); }
|
||||
|
||||
/// Fill the QuadratureFunction @a qf with the constant value.
|
||||
void Project(QuadratureFunction &qf);
|
||||
};
|
||||
|
||||
/** @brief A piecewise constant coefficient with the constants keyed
|
||||
@@ -274,6 +283,13 @@ public:
|
||||
/// Evaluate the coefficient at @a ip.
|
||||
virtual double Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
|
||||
/// @brief Fill the QuadratureFunction @a qf by evaluating the coefficient at
|
||||
/// the quadrature points.
|
||||
///
|
||||
/// This function uses the efficient QuadratureFunction::ProjectGridFunction
|
||||
/// to fill the QuadratureFunction.
|
||||
virtual void Project(QuadratureFunction &qf);
|
||||
};
|
||||
|
||||
|
||||
@@ -471,6 +487,13 @@ public:
|
||||
virtual void Eval(DenseMatrix &M, ElementTransformation &T,
|
||||
const IntegrationRule &ir);
|
||||
|
||||
/// @brief Fill the QuadratureFunction @a qf by evaluating the coefficient at
|
||||
/// the quadrature points.
|
||||
///
|
||||
/// The @a vdim of the VectorCoefficient should be equal to the @a vdim of
|
||||
/// the QuadratureFunction.
|
||||
virtual void Project(QuadratureFunction &qf);
|
||||
|
||||
virtual ~VectorCoefficient() { }
|
||||
};
|
||||
|
||||
@@ -491,7 +514,7 @@ public:
|
||||
const IntegrationPoint &ip) { V = vec; }
|
||||
|
||||
/// Return a reference to the constant vector in this class.
|
||||
const Vector& GetVec() { return vec; }
|
||||
const Vector& GetVec() const { return vec; }
|
||||
};
|
||||
|
||||
/** @brief A piecewise vector-valued coefficient with the pieces keyed off the
|
||||
@@ -688,6 +711,13 @@ public:
|
||||
virtual void Eval(DenseMatrix &M, ElementTransformation &T,
|
||||
const IntegrationRule &ir);
|
||||
|
||||
/// @brief Fill the QuadratureFunction @a qf by evaluating the coefficient at
|
||||
/// the quadrature points.
|
||||
///
|
||||
/// This function uses the efficient QuadratureFunction::ProjectGridFunction
|
||||
/// to fill the QuadratureFunction.
|
||||
virtual void Project(QuadratureFunction &qf);
|
||||
|
||||
virtual ~VectorGridFunctionCoefficient() { }
|
||||
};
|
||||
|
||||
@@ -915,6 +945,14 @@ public:
|
||||
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip) = 0;
|
||||
|
||||
/// @brief Fill the QuadratureFunction @a qf by evaluating the coefficient at
|
||||
/// the quadrature points. The matrix will be transposed or not according to
|
||||
/// the boolean argument @a transpose.
|
||||
///
|
||||
/// The @a vdim of the QuadratureFunction should be equal to the height times
|
||||
/// the width of the matrix.
|
||||
virtual void Project(QuadratureFunction &qf, bool transpose=false);
|
||||
|
||||
/// (DEPRECATED) Evaluate a symmetric matrix coefficient.
|
||||
/** @brief Evaluate the upper triangular entries of the matrix coefficient
|
||||
in the symmetric case, similarly to Eval. Matrix entry (i,j) is stored
|
||||
@@ -943,6 +981,8 @@ public:
|
||||
/// Evaluate the matrix coefficient at @a ip.
|
||||
virtual void Eval(DenseMatrix &M, ElementTransformation &T,
|
||||
const IntegrationPoint &ip) { M = mat; }
|
||||
/// Return a reference to the constant matrix.
|
||||
const DenseMatrix& GetMatrix() { return mat; }
|
||||
};
|
||||
|
||||
|
||||
@@ -1146,6 +1186,8 @@ public:
|
||||
can be overridden with the @a own parameter. */
|
||||
void Set(int i, int j, Coefficient * c, bool own=true);
|
||||
|
||||
using MatrixCoefficient::Eval;
|
||||
|
||||
/// Evaluate coefficient located at (i,j) in the matrix using integration
|
||||
/// point @a ip.
|
||||
double Eval(int i, int j, ElementTransformation &T, const IntegrationPoint &ip)
|
||||
@@ -1260,6 +1302,15 @@ public:
|
||||
/// Get the size of the matrix.
|
||||
int GetSize() const { return height; }
|
||||
|
||||
/// @brief Fill the QuadratureFunction @a qf by evaluating the coefficient at
|
||||
/// the quadrature points.
|
||||
///
|
||||
/// @note As opposed to MatrixCoefficient::Project, this function stores only
|
||||
/// the @a symmetric part of the matrix at each quadrature point.
|
||||
///
|
||||
/// The @a vdim of the coefficient should be equal to height*(height+1)/2.
|
||||
virtual void ProjectSymmetric(QuadratureFunction &qf);
|
||||
|
||||
/** @brief Evaluate the matrix coefficient in the element described by @a T
|
||||
at the point @a ip, storing the result as a symmetric matrix @a K. */
|
||||
/** @note When this method is called, the caller must make sure that the
|
||||
@@ -1280,6 +1331,9 @@ public:
|
||||
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
|
||||
/// Return a reference to the constant matrix.
|
||||
const DenseSymmetricMatrix& GetMatrix() { return mat; }
|
||||
|
||||
virtual ~SymmetricMatrixCoefficient() { }
|
||||
};
|
||||
|
||||
@@ -2049,8 +2103,6 @@ public:
|
||||
};
|
||||
///@}
|
||||
|
||||
class QuadratureFunction;
|
||||
|
||||
/** @brief Vector quadrature function coefficient which requires that the
|
||||
quadrature rules used for this vector coefficient be the same as those that
|
||||
live within the supplied QuadratureFunction. */
|
||||
@@ -2075,6 +2127,8 @@ public:
|
||||
virtual void Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
|
||||
virtual void Project(QuadratureFunction &qf);
|
||||
|
||||
virtual ~VectorQuadratureFunctionCoefficient() { }
|
||||
};
|
||||
|
||||
@@ -2094,9 +2148,123 @@ public:
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
|
||||
virtual void Project(QuadratureFunction &qf);
|
||||
|
||||
virtual ~QuadratureFunctionCoefficient() { }
|
||||
};
|
||||
|
||||
/// Flags that determine what storage optimizations to use in CoefficientVector
|
||||
enum class CoefficientStorage : int
|
||||
{
|
||||
FULL = 0, ///< Store the coefficient as a full QuadratureFunction.
|
||||
CONSTANTS = 1 << 0, ///< Store constants using only @a vdim entries.
|
||||
SYMMETRIC = 1 << 1, ///< Store the triangular part of symmetric matrices.
|
||||
COMPRESSED = CONSTANTS | SYMMETRIC ///< Enable all above compressions.
|
||||
};
|
||||
|
||||
inline CoefficientStorage operator|(CoefficientStorage a, CoefficientStorage b)
|
||||
{
|
||||
return CoefficientStorage(int(a) | int(b));
|
||||
}
|
||||
|
||||
inline int operator&(CoefficientStorage a, CoefficientStorage b)
|
||||
{
|
||||
return int(a) & int(b);
|
||||
}
|
||||
|
||||
|
||||
/// @brief Class to represent a coefficient evaluated at quadrature points.
|
||||
///
|
||||
/// In the general case, a CoefficientVector is the same as a QuadratureFunction
|
||||
/// with a coefficient projected onto it.
|
||||
///
|
||||
/// This class allows for some "compression" of the coefficient data, according
|
||||
/// to the storage flags given by CoefficientStorage. For example, constant
|
||||
/// coefficients can be stored using only @a vdim values, and symmetric matrices
|
||||
/// can be stored using e.g. the upper triangular part of the matrix.
|
||||
class CoefficientVector : public Vector
|
||||
{
|
||||
protected:
|
||||
CoefficientStorage storage; ///< Storage optimizations (see CoefficientStorage).
|
||||
int vdim; ///< Number of values per quadrature point.
|
||||
QuadratureSpaceBase &qs; ///< Associated QuadratureSpaceBase.
|
||||
QuadratureFunction *qf; ///< Internal QuadratureFunction (owned, may be NULL).
|
||||
public:
|
||||
/// Create an empty CoefficientVector.
|
||||
CoefficientVector(QuadratureSpaceBase &qs_,
|
||||
CoefficientStorage storage_ = CoefficientStorage::FULL);
|
||||
|
||||
/// @brief Create a CoefficientVector from the given Coefficient and
|
||||
/// QuadratureSpaceBase.
|
||||
///
|
||||
/// If @a coeff is NULL, it will be interpreted as a constant with value one.
|
||||
/// @sa CoefficientStorage for a description of @a storage_.
|
||||
CoefficientVector(Coefficient *coeff, QuadratureSpaceBase &qs,
|
||||
CoefficientStorage storage_ = CoefficientStorage::FULL);
|
||||
|
||||
/// @brief Create a CoefficientVector from the given Coefficient and
|
||||
/// QuadratureSpaceBase.
|
||||
///
|
||||
/// @sa CoefficientStorage for a description of @a storage_.
|
||||
CoefficientVector(Coefficient &coeff, QuadratureSpaceBase &qs,
|
||||
CoefficientStorage storage_ = CoefficientStorage::FULL);
|
||||
|
||||
/// @brief Create a CoefficientVector from the given VectorCoefficient and
|
||||
/// QuadratureSpaceBase.
|
||||
///
|
||||
/// @sa CoefficientStorage for a description of @a storage_.
|
||||
CoefficientVector(VectorCoefficient &coeff, QuadratureSpaceBase &qs,
|
||||
CoefficientStorage storage_ = CoefficientStorage::FULL);
|
||||
|
||||
/// @brief Create a CoefficientVector from the given MatrixCoefficient and
|
||||
/// QuadratureSpaceBase.
|
||||
///
|
||||
/// @sa CoefficientStorage for a description of @a storage_.
|
||||
CoefficientVector(MatrixCoefficient &coeff, QuadratureSpaceBase &qs,
|
||||
CoefficientStorage storage_ = CoefficientStorage::FULL);
|
||||
|
||||
/// @brief Evaluate the given Coefficient at the quadrature points defined by
|
||||
/// @ref qs.
|
||||
void Project(Coefficient &coeff);
|
||||
|
||||
/// @brief Evaluate the given VectorCoefficient at the quadrature points
|
||||
/// defined by @ref qs.
|
||||
///
|
||||
/// @sa CoefficientVector for a description of the @a compress argument.
|
||||
void Project(VectorCoefficient &coeff);
|
||||
|
||||
/// @brief Evaluate the given MatrixCoefficient at the quadrature points
|
||||
/// defined by @ref qs.
|
||||
///
|
||||
/// @sa CoefficientVector for a description of the @a compress argument.
|
||||
void Project(MatrixCoefficient &coeff, bool transpose=false);
|
||||
|
||||
/// @brief Project the tranpose of @a coeff.
|
||||
///
|
||||
/// @sa Project(MatrixCoefficient&, QuadratureSpace&, bool, bool)
|
||||
void ProjectTranspose(MatrixCoefficient &coeff);
|
||||
|
||||
/// Make this vector a reference to the given QuadratureFunction.
|
||||
void MakeRef(const QuadratureFunction &qf_);
|
||||
|
||||
/// Set this vector to the given constant.
|
||||
void SetConstant(double constant);
|
||||
|
||||
/// Set this vector to the given constant vector.
|
||||
void SetConstant(const Vector &constant);
|
||||
|
||||
/// Set this vector to the given constant matrix.
|
||||
void SetConstant(const DenseMatrix &constant);
|
||||
|
||||
/// Set this vector to the given constant symmetric matrix.
|
||||
void SetConstant(const DenseSymmetricMatrix &constant);
|
||||
|
||||
/// Return the number of values per quadrature point.
|
||||
int GetVDim() const;
|
||||
|
||||
~CoefficientVector();
|
||||
};
|
||||
|
||||
/** @brief Compute the Lp norm of a function f.
|
||||
\f$ \| f \|_{Lp} = ( \int_\Omega | f |^p d\Omega)^{1/p} \f$ */
|
||||
double ComputeLpNorm(double p, Coefficient &coeff, Mesh &mesh,
|
||||
|
||||
@@ -442,7 +442,7 @@ void VisItDataCollection::RegisterQField(const std::string& name,
|
||||
{
|
||||
int locLOD = GlobGeometryRefiner.GetRefinementLevelFromElems(
|
||||
mesh->GetElementBaseGeometry(e),
|
||||
qf->GetElementIntRule(e).GetNPoints());
|
||||
qf->GetIntRule(e).GetNPoints());
|
||||
|
||||
LOD = std::max(LOD,locLOD);
|
||||
}
|
||||
@@ -1078,7 +1078,7 @@ void ParaViewDataCollection::SaveGFieldVTU(std::ostream &os, int ref_,
|
||||
it->second->GetValues(i, RefG->RefPts, val, pmat);
|
||||
for (int j = 0; j < val.Size(); j++)
|
||||
{
|
||||
WriteBinaryOrASCII(out, buf, val(j), "\n", pv_data_format);
|
||||
WriteBinaryOrASCII(os, buf, val(j), "\n", pv_data_format);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1094,7 +1094,7 @@ void ParaViewDataCollection::SaveGFieldVTU(std::ostream &os, int ref_,
|
||||
{
|
||||
for (int ii = 0; ii < vval.Height(); ii++)
|
||||
{
|
||||
WriteBinaryOrASCII(out, buf, vval(ii,jj), " ", pv_data_format);
|
||||
WriteBinaryOrASCII(os, buf, vval(ii,jj), " ", pv_data_format);
|
||||
}
|
||||
if (pv_data_format == VTKFormat::ASCII) { os << '\n'; }
|
||||
}
|
||||
|
||||
@@ -14,6 +14,7 @@
|
||||
|
||||
#include "../config/config.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
#include "qfunction.hpp"
|
||||
#ifdef MFEM_USE_MPI
|
||||
#include "pgridfunc.hpp"
|
||||
#endif
|
||||
|
||||
@@ -0,0 +1,315 @@
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "dgmassinv.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "dgmassinv_kernels.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
DGMassInverse::DGMassInverse(FiniteElementSpace &fes_orig, Coefficient *coeff,
|
||||
const IntegrationRule *ir,
|
||||
int btype)
|
||||
: Solver(fes_orig.GetTrueVSize()),
|
||||
fec(fes_orig.GetMaxElementOrder(),
|
||||
fes_orig.GetMesh()->Dimension(),
|
||||
btype,
|
||||
fes_orig.GetFE(0)->GetMapType()),
|
||||
fes(fes_orig.GetMesh(), &fec)
|
||||
{
|
||||
MFEM_VERIFY(fes.IsDGSpace(), "Space must be DG.");
|
||||
MFEM_VERIFY(!fes.IsVariableOrder(), "Variable orders not supported.");
|
||||
|
||||
const int btype_orig =
|
||||
static_cast<const L2_FECollection*>(fes_orig.FEColl())->GetBasisType();
|
||||
|
||||
if (btype_orig == btype)
|
||||
{
|
||||
// No change of basis required
|
||||
d2q = nullptr;
|
||||
}
|
||||
else
|
||||
{
|
||||
// original basis to solver basis
|
||||
const auto mode = DofToQuad::TENSOR;
|
||||
d2q = &fes_orig.GetFE(0)->GetDofToQuad(fes.GetFE(0)->GetNodes(), mode);
|
||||
|
||||
int n = d2q->ndof;
|
||||
Array<double> B_inv = d2q->B; // deep copy
|
||||
Array<int> ipiv(n);
|
||||
// solver basis to original
|
||||
LUFactors lu(B_inv.HostReadWrite(), ipiv.HostWrite());
|
||||
lu.Factor(n);
|
||||
B_.SetSize(n*n);
|
||||
lu.GetInverseMatrix(n, B_.HostWrite());
|
||||
Bt_.SetSize(n*n);
|
||||
DenseMatrix B_matrix(B_.HostReadWrite(), n, n);
|
||||
DenseMatrix Bt_matrix(Bt_.HostWrite(), n, n);
|
||||
Bt_matrix.Transpose(B_matrix);
|
||||
}
|
||||
|
||||
if (coeff) { m = new MassIntegrator(*coeff, ir); }
|
||||
else { m = new MassIntegrator(ir); }
|
||||
|
||||
diag_inv.SetSize(height);
|
||||
// Workspace vectors used for CG
|
||||
r_.SetSize(height);
|
||||
d_.SetSize(height);
|
||||
z_.SetSize(height);
|
||||
// Only need transformed RHS if basis is different
|
||||
if (btype_orig != btype) { b2_.SetSize(height); }
|
||||
|
||||
M = new BilinearForm(&fes);
|
||||
M->AddDomainIntegrator(m); // M assumes ownership of m
|
||||
M->SetAssemblyLevel(AssemblyLevel::PARTIAL);
|
||||
|
||||
// Assemble the bilinear form and its diagonal (for preconditioning).
|
||||
Update();
|
||||
}
|
||||
|
||||
DGMassInverse::DGMassInverse(FiniteElementSpace &fes_, Coefficient &coeff,
|
||||
int btype)
|
||||
: DGMassInverse(fes_, &coeff, nullptr, btype) { }
|
||||
|
||||
DGMassInverse::DGMassInverse(FiniteElementSpace &fes_, Coefficient &coeff,
|
||||
const IntegrationRule &ir, int btype)
|
||||
: DGMassInverse(fes_, &coeff, &ir, btype) { }
|
||||
|
||||
DGMassInverse::DGMassInverse(FiniteElementSpace &fes_,
|
||||
const IntegrationRule &ir, int btype)
|
||||
: DGMassInverse(fes_, nullptr, &ir, btype) { }
|
||||
|
||||
DGMassInverse::DGMassInverse(FiniteElementSpace &fes_, int btype)
|
||||
: DGMassInverse(fes_, nullptr, nullptr, btype) { }
|
||||
|
||||
void DGMassInverse::SetOperator(const Operator &op)
|
||||
{
|
||||
MFEM_ABORT("SetOperator not supported with DGMassInverse.")
|
||||
}
|
||||
|
||||
void DGMassInverse::SetRelTol(const double rel_tol_) { rel_tol = rel_tol_; }
|
||||
|
||||
void DGMassInverse::SetAbsTol(const double abs_tol_) { abs_tol = abs_tol_; }
|
||||
|
||||
void DGMassInverse::SetMaxIter(const double max_iter_) { max_iter = max_iter_; }
|
||||
|
||||
void DGMassInverse::Update()
|
||||
{
|
||||
M->Assemble();
|
||||
M->AssembleDiagonal(diag_inv);
|
||||
internal::MakeReciprocal(diag_inv.Size(), diag_inv.ReadWrite());
|
||||
}
|
||||
|
||||
DGMassInverse::~DGMassInverse()
|
||||
{
|
||||
delete M;
|
||||
}
|
||||
|
||||
template<int DIM, int D1D, int Q1D>
|
||||
void DGMassInverse::DGMassCGIteration(const Vector &b_, Vector &u_) const
|
||||
{
|
||||
using namespace internal; // host/device kernel functions
|
||||
|
||||
const int NE = fes.GetNE();
|
||||
const int d1d = m->dofs1D;
|
||||
const int q1d = m->quad1D;
|
||||
|
||||
const int ND = static_cast<int>(pow(d1d, DIM));
|
||||
|
||||
const auto B = m->maps->B.Read();
|
||||
const auto Bt = m->maps->Bt.Read();
|
||||
const auto pa_data = m->pa_data.Read();
|
||||
const auto dinv = diag_inv.Read();
|
||||
auto r = r_.Write();
|
||||
auto d = d_.Write();
|
||||
auto z = z_.Write();
|
||||
auto u = u_.ReadWrite();
|
||||
|
||||
const double RELTOL = rel_tol;
|
||||
const double ABSTOL = abs_tol;
|
||||
const double MAXIT = max_iter;
|
||||
const bool IT_MODE = iterative_mode;
|
||||
const bool CHANGE_BASIS = (d2q != nullptr);
|
||||
|
||||
// b is the right-hand side (if no change of basis, this just points to the
|
||||
// incoming RHS vector, if we have to change basis, this points to the
|
||||
// internal b2 vector where we put the transformed RHS)
|
||||
const double *b;
|
||||
// the following are non-null if we have to change basis
|
||||
double *b2 = nullptr; // non-const access to b2
|
||||
const double *b_orig = nullptr; // RHS vector in "original" basis
|
||||
const double *d2q_B = nullptr; // matrix to transform initial guess
|
||||
const double *q2d_B = nullptr; // matrix to transform solution
|
||||
const double *q2d_Bt = nullptr; // matrix to transform RHS
|
||||
if (CHANGE_BASIS)
|
||||
{
|
||||
d2q_B = d2q->B.Read();
|
||||
q2d_B = B_.Read();
|
||||
q2d_Bt = Bt_.Read();
|
||||
|
||||
b2 = b2_.Write();
|
||||
b_orig = b_.Read();
|
||||
b = b2;
|
||||
}
|
||||
else
|
||||
{
|
||||
b = b_.Read();
|
||||
}
|
||||
|
||||
constexpr int NB = Q1D ? Q1D : 1; // block size
|
||||
|
||||
MFEM_FORALL_2D(e, NE, NB, NB, 1,
|
||||
{
|
||||
constexpr int NB = Q1D ? Q1D : 1; // redefine here for some compilers
|
||||
|
||||
// Perform change of basis if needed
|
||||
if (CHANGE_BASIS)
|
||||
{
|
||||
// Transform RHS
|
||||
DGMassBasis<DIM,D1D,MAX_D1D>(e, NE, q2d_Bt, b_orig, b2, d1d);
|
||||
if (IT_MODE)
|
||||
{
|
||||
// Transform initial guess
|
||||
DGMassBasis<DIM,D1D,MAX_D1D>(e, NE, d2q_B, u, u, d1d);
|
||||
}
|
||||
}
|
||||
|
||||
const int tid = MFEM_THREAD_ID(x) + NB*MFEM_THREAD_ID(y);
|
||||
|
||||
// Compute first residual
|
||||
if (IT_MODE)
|
||||
{
|
||||
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, u, r, d1d, q1d);
|
||||
DGMassAxpy(e, NE, ND, 1.0, b, -1.0, r, r); // r = b - r
|
||||
}
|
||||
else
|
||||
{
|
||||
// if not in iterative mode, use zero initial guess
|
||||
const int BX = MFEM_THREAD_SIZE(x);
|
||||
const int BY = MFEM_THREAD_SIZE(y);
|
||||
const int bxy = BX*BY;
|
||||
const auto B = ConstDeviceMatrix(b, ND, NE);
|
||||
auto U = DeviceMatrix(u, ND, NE);
|
||||
auto R = DeviceMatrix(r, ND, NE);
|
||||
for (int i = tid; i < ND; i += bxy)
|
||||
{
|
||||
U(i, e) = 0.0;
|
||||
R(i, e) = B(i, e);
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
|
||||
DGMassPreconditioner(e, NE, ND, dinv, r, z);
|
||||
DGMassAxpy(e, NE, ND, 1.0, z, 0.0, z, d); // d = z
|
||||
|
||||
double nom = DGMassDot<NB>(e, NE, ND, d, r);
|
||||
if (nom < 0.0) { return; /* Not positive definite */ }
|
||||
double r0 = fmax(nom*RELTOL*RELTOL, ABSTOL*ABSTOL);
|
||||
if (nom <= r0) { return; /* Converged */ }
|
||||
|
||||
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, d, z, d1d, q1d);
|
||||
double den = DGMassDot<NB>(e, NE, ND, z, d);
|
||||
if (den <= 0.0)
|
||||
{
|
||||
DGMassDot<NB>(e, NE, ND, d, d);
|
||||
// d2 > 0 => not positive definite
|
||||
if (den == 0.0) { return; }
|
||||
}
|
||||
|
||||
// start iteration
|
||||
int i = 1;
|
||||
while (true)
|
||||
{
|
||||
const double alpha = nom/den;
|
||||
DGMassAxpy(e, NE, ND, 1.0, u, alpha, d, u); // u = u + alpha*d
|
||||
DGMassAxpy(e, NE, ND, 1.0, r, -alpha, z, r); // r = r - alpha*A*d
|
||||
|
||||
DGMassPreconditioner(e, NE, ND, dinv, r, z);
|
||||
|
||||
double betanom = DGMassDot<NB>(e, NE, ND, r, z);
|
||||
if (betanom < 0.0) { return; /* Not positive definite */ }
|
||||
if (betanom <= r0) { break; /* Converged */ }
|
||||
|
||||
if (++i > MAXIT) { break; }
|
||||
|
||||
const double beta = betanom/nom;
|
||||
DGMassAxpy(e, NE, ND, 1.0, z, beta, d, d); // d = z + beta*d
|
||||
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, d, z, d1d, q1d); // z = A d
|
||||
den = DGMassDot<NB>(e, NE, ND, d, z);
|
||||
if (den <= 0.0)
|
||||
{
|
||||
DGMassDot<NB>(e, NE, ND, d, d);
|
||||
// d2 > 0 => not positive definite
|
||||
if (den == 0.0) { break; }
|
||||
}
|
||||
nom = betanom;
|
||||
}
|
||||
|
||||
if (CHANGE_BASIS)
|
||||
{
|
||||
DGMassBasis<DIM,D1D,MAX_D1D>(e, NE, q2d_B, u, u, d1d);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void DGMassInverse::Mult(const Vector &Mu, Vector &u) const
|
||||
{
|
||||
// Dispatch to templated version based on dim, d1d, and q1d.
|
||||
const int dim = fes.GetMesh()->Dimension();
|
||||
const int d1d = m->dofs1D;
|
||||
const int q1d = m->quad1D;
|
||||
|
||||
const int id = (d1d << 4) | q1d;
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x11: return DGMassCGIteration<2,1,1>(Mu, u);
|
||||
case 0x22: return DGMassCGIteration<2,2,2>(Mu, u);
|
||||
case 0x33: return DGMassCGIteration<2,3,3>(Mu, u);
|
||||
case 0x35: return DGMassCGIteration<2,3,5>(Mu, u);
|
||||
case 0x44: return DGMassCGIteration<2,4,4>(Mu, u);
|
||||
case 0x46: return DGMassCGIteration<2,4,6>(Mu, u);
|
||||
case 0x55: return DGMassCGIteration<2,5,5>(Mu, u);
|
||||
case 0x57: return DGMassCGIteration<2,5,7>(Mu, u);
|
||||
case 0x66: return DGMassCGIteration<2,6,6>(Mu, u);
|
||||
case 0x68: return DGMassCGIteration<2,6,8>(Mu, u);
|
||||
default: return DGMassCGIteration<2>(Mu, u); // Fallback
|
||||
}
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch (id)
|
||||
{
|
||||
case 0x22: return DGMassCGIteration<3,2,2>(Mu, u);
|
||||
case 0x23: return DGMassCGIteration<3,2,3>(Mu, u);
|
||||
case 0x33: return DGMassCGIteration<3,3,3>(Mu, u);
|
||||
case 0x34: return DGMassCGIteration<3,3,4>(Mu, u);
|
||||
case 0x35: return DGMassCGIteration<3,3,5>(Mu, u);
|
||||
case 0x44: return DGMassCGIteration<3,4,4>(Mu, u);
|
||||
case 0x45: return DGMassCGIteration<3,4,5>(Mu, u);
|
||||
case 0x46: return DGMassCGIteration<3,4,6>(Mu, u);
|
||||
case 0x48: return DGMassCGIteration<3,4,8>(Mu, u);
|
||||
case 0x55: return DGMassCGIteration<3,5,5>(Mu, u);
|
||||
case 0x56: return DGMassCGIteration<3,5,6>(Mu, u);
|
||||
case 0x57: return DGMassCGIteration<3,5,7>(Mu, u);
|
||||
case 0x58: return DGMassCGIteration<3,5,8>(Mu, u);
|
||||
case 0x66: return DGMassCGIteration<3,6,6>(Mu, u);
|
||||
case 0x67: return DGMassCGIteration<3,6,7>(Mu, u);
|
||||
default: return DGMassCGIteration<3>(Mu, u); // Fallback
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
@@ -0,0 +1,112 @@
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_DGMASSINV_HPP
|
||||
#define MFEM_DGMASSINV_HPP
|
||||
|
||||
#include "../linalg/operator.hpp"
|
||||
#include "fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// @brief Solver for the discontinuous Galerkin mass matrix.
|
||||
///
|
||||
/// This class performs a @a local (diagonally preconditioned) conjugate
|
||||
/// gradient iteration for each element. Optionally, a change of basis is
|
||||
/// performed to iterate on a better-conditioned system. This class fully
|
||||
/// supports execution on device (GPU).
|
||||
class DGMassInverse : public Solver
|
||||
{
|
||||
protected:
|
||||
DG_FECollection fec; ///< FE collection in requested basis.
|
||||
FiniteElementSpace fes; ///< FE space in requested basis.
|
||||
const DofToQuad *d2q; ///< Change of basis. Not owned.
|
||||
Array<double> B_; ///< Inverse of change of basis.
|
||||
Array<double> Bt_; ///< Inverse of change of basis, transposed.
|
||||
class BilinearForm *M; ///< Mass bilinear form, owned.
|
||||
class MassIntegrator *m; ///< Mass integrator, owned by the form @ref M.
|
||||
Vector diag_inv; ///< Jacobi preconditioner.
|
||||
double rel_tol = 1e-12; ///< Relative CG tolerance.
|
||||
double abs_tol = 1e-12; ///< Absolute CG tolerance.
|
||||
int max_iter = 100; ///< Maximum number of CG iterations;
|
||||
|
||||
/// @name Intermediate vectors needed for CG three-term recurrence.
|
||||
///@{
|
||||
mutable Vector r_, d_, z_, b2_;
|
||||
///@}
|
||||
|
||||
/// @brief Protected constructor, used internally.
|
||||
///
|
||||
/// Custom coefficient and integration rule are used if @a coeff and @a ir
|
||||
/// are non-NULL.
|
||||
DGMassInverse(FiniteElementSpace &fes_, Coefficient *coeff,
|
||||
const IntegrationRule *ir, int btype);
|
||||
public:
|
||||
/// @brief Construct the DG inverse mass operator for @a fes_.
|
||||
///
|
||||
/// The basis type @a btype determines which basis should be used internally
|
||||
/// in the solver. This <b>does not</b> have to be the same basis as @a fes_.
|
||||
/// The best choice is typically BasisType::GaussLegendre because it is
|
||||
/// well-preconditioned by its diagonal.
|
||||
///
|
||||
/// The solution and right-hand side used for the solver are not affected by
|
||||
/// this basis (they correspond to the basis of @a fes_). @a btype is only
|
||||
/// used internally, and only has an effect on the convergence rate.
|
||||
DGMassInverse(FiniteElementSpace &fes_, int btype=BasisType::GaussLegendre);
|
||||
/// @brief Construct the DG inverse mass operator for @a fes_ with
|
||||
/// Coefficient @a coeff.
|
||||
///
|
||||
/// @sa DGMassInverse(FiniteElementSpace&, int) for information about @a
|
||||
/// btype.
|
||||
DGMassInverse(FiniteElementSpace &fes_, Coefficient &coeff,
|
||||
int btype=BasisType::GaussLegendre);
|
||||
/// @brief Construct the DG inverse mass operator for @a fes_ with
|
||||
/// Coefficient @a coeff and IntegrationRule @a ir.
|
||||
///
|
||||
/// @sa DGMassInverse(FiniteElementSpace&, int) for information about @a
|
||||
/// btype.
|
||||
DGMassInverse(FiniteElementSpace &fes_, Coefficient &coeff,
|
||||
const IntegrationRule &ir, int btype=BasisType::GaussLegendre);
|
||||
/// @brief Construct the DG inverse mass operator for @a fes_ with
|
||||
/// IntegrationRule @a ir.
|
||||
///
|
||||
/// @sa DGMassInverse(FiniteElementSpace&, int) for information about @a
|
||||
/// btype.
|
||||
DGMassInverse(FiniteElementSpace &fes_, const IntegrationRule &ir,
|
||||
int btype=BasisType::GaussLegendre);
|
||||
/// @brief Solve the system M b = u.
|
||||
///
|
||||
/// If @ref iterative_mode is @a true, @a u is used as an initial guess.
|
||||
void Mult(const Vector &b, Vector &u) const;
|
||||
/// Not implemented. Aborts.
|
||||
void SetOperator(const Operator &op);
|
||||
/// Set the relative tolerance.
|
||||
void SetRelTol(const double rel_tol_);
|
||||
/// Set the absolute tolerance.
|
||||
void SetAbsTol(const double abs_tol_);
|
||||
/// Set the maximum number of iterations.
|
||||
void SetMaxIter(const double max_iter_);
|
||||
/// Recompute operator and preconditioner (when coefficient or mesh changes).
|
||||
void Update();
|
||||
|
||||
~DGMassInverse();
|
||||
|
||||
/// @brief Solve the system M b = u. <b>Not part of the public interface.</b>
|
||||
/// @note This member function must be public because it contains an
|
||||
/// MFEM_FORALL kernel (nvcc limitation)
|
||||
template<int DIM, int D1D = 0, int Q1D = 0>
|
||||
void DGMassCGIteration(const Vector &b_, Vector &u_) const;
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,295 @@
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_DGMASSINV_KERNELS_HPP
|
||||
#define MFEM_DGMASSINV_KERNELS_HPP
|
||||
|
||||
#include "bilininteg_mass_pa.hpp"
|
||||
#include "../linalg/kernels.hpp"
|
||||
#include "kernels.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
void MakeReciprocal(int n, double *x)
|
||||
{
|
||||
MFEM_FORALL(i, n, x[i] = 1.0/x[i]; );
|
||||
}
|
||||
|
||||
template <int DIM, int D1D, int Q1D>
|
||||
MFEM_HOST_DEVICE inline
|
||||
void DGMassApply(const int e,
|
||||
const int NE,
|
||||
const double *B,
|
||||
const double *Bt,
|
||||
const double *pa_data,
|
||||
const double *x,
|
||||
double *y,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
constexpr bool use_smem = (D1D > 0 && Q1D > 0);
|
||||
constexpr bool ACCUM = false;
|
||||
constexpr int NBZ = 1;
|
||||
if (use_smem)
|
||||
{
|
||||
// cannot specialize functions below with D1D or Q1D equal to zero
|
||||
// (this branch only runs with D1D and Q1D are both positive)
|
||||
constexpr int TD1D = D1D ? D1D : 1;
|
||||
constexpr int TQ1D = Q1D ? Q1D : 1;
|
||||
if (DIM == 2)
|
||||
{
|
||||
SmemPAMassApply2D_Element<TD1D,TQ1D,NBZ,ACCUM>(e, NE, B, pa_data, x, y);
|
||||
}
|
||||
else if (DIM == 3)
|
||||
{
|
||||
SmemPAMassApply3D_Element<TD1D,TQ1D,ACCUM>(e, NE, B, pa_data, x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT_KERNEL("Unsupported dimension.");
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
if (DIM == 2)
|
||||
{
|
||||
PAMassApply2D_Element<ACCUM>(e, NE, B, Bt, pa_data, x, y, d1d, q1d);
|
||||
}
|
||||
else if (DIM == 3)
|
||||
{
|
||||
PAMassApply3D_Element<ACCUM>(e, NE, B, Bt, pa_data, x, y, d1d, q1d);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT_KERNEL("Unsupported dimension.");
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE inline
|
||||
void DGMassPreconditioner(const int e,
|
||||
const int NE,
|
||||
const int ND,
|
||||
const double *dinv,
|
||||
const double *x,
|
||||
double *y)
|
||||
{
|
||||
const auto X = ConstDeviceMatrix(x, ND, NE);
|
||||
const auto D = ConstDeviceMatrix(dinv, ND, NE);
|
||||
auto Y = DeviceMatrix(y, ND, NE);
|
||||
|
||||
const int tid = MFEM_THREAD_ID(x) + MFEM_THREAD_SIZE(x)*MFEM_THREAD_ID(y);
|
||||
const int bxy = MFEM_THREAD_SIZE(x)*MFEM_THREAD_SIZE(y);
|
||||
|
||||
for (int i = tid; i < ND; i += bxy)
|
||||
{
|
||||
Y(i, e) = D(i, e)*X(i, e);
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE inline
|
||||
void DGMassAxpy(const int e,
|
||||
const int NE,
|
||||
const int ND,
|
||||
const double a,
|
||||
const double *x,
|
||||
const double b,
|
||||
const double *y,
|
||||
double *z)
|
||||
{
|
||||
const auto X = ConstDeviceMatrix(x, ND, NE);
|
||||
const auto Y = ConstDeviceMatrix(y, ND, NE);
|
||||
auto Z = DeviceMatrix(z, ND, NE);
|
||||
|
||||
const int tid = MFEM_THREAD_ID(x) + MFEM_THREAD_SIZE(x)*MFEM_THREAD_ID(y);
|
||||
const int bxy = MFEM_THREAD_SIZE(x)*MFEM_THREAD_SIZE(y);
|
||||
|
||||
for (int i = tid; i < ND; i += bxy)
|
||||
{
|
||||
Z(i, e) = a*X(i, e) + b*Y(i, e);
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
|
||||
template <int NB>
|
||||
MFEM_HOST_DEVICE inline
|
||||
double DGMassDot(const int e,
|
||||
const int NE,
|
||||
const int ND,
|
||||
const double *x,
|
||||
const double *y)
|
||||
{
|
||||
const auto X = ConstDeviceMatrix(x, ND, NE);
|
||||
const auto Y = ConstDeviceMatrix(y, ND, NE);
|
||||
|
||||
const int tid = MFEM_THREAD_ID(x) + MFEM_THREAD_SIZE(x)*MFEM_THREAD_ID(y);
|
||||
const int bxy = MFEM_THREAD_SIZE(x)*MFEM_THREAD_SIZE(y);
|
||||
|
||||
MFEM_SHARED double s_dot[NB*NB];
|
||||
s_dot[tid] = 0.0;
|
||||
|
||||
for (int i = tid; i < ND; i += bxy) { s_dot[tid] += X(i,e)*Y(i,e); }
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
if (bxy > 512 && tid + 512 < bxy) { s_dot[tid] += s_dot[tid + 512]; }
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
if (bxy > 256 && tid < 256 && tid + 256 < bxy) { s_dot[tid] += s_dot[tid + 256]; }
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
if (bxy > 128 && tid < 128 && tid + 128 < bxy) { s_dot[tid] += s_dot[tid + 128]; }
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
if (bxy > 64 && tid < 64 && tid + 64 < bxy) { s_dot[tid] += s_dot[tid + 64]; }
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
if (bxy > 32 && tid < 32 && tid + 32 < bxy) { s_dot[tid] += s_dot[tid + 32]; }
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
if (bxy > 16 && tid < 16 && tid + 16 < bxy) { s_dot[tid] += s_dot[tid + 16]; }
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
if (bxy > 8 && tid < 8 && tid + 8 < bxy) { s_dot[tid] += s_dot[tid + 8]; }
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
if (bxy > 4 && tid < 4 && tid + 4 < bxy) { s_dot[tid] += s_dot[tid + 4]; }
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
if (bxy > 2 && tid < 2 && tid + 2 < bxy) { s_dot[tid] += s_dot[tid + 2]; }
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
if (bxy > 1 && tid < 1 && tid + 1 < bxy) { s_dot[tid] += s_dot[tid + 1]; }
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
return s_dot[0];
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int MAX_D1D = 0>
|
||||
MFEM_HOST_DEVICE inline
|
||||
void DGMassBasis2D(const int e,
|
||||
const int NE,
|
||||
const double *b_,
|
||||
const double *x_,
|
||||
double *y_,
|
||||
const int d1d = 0)
|
||||
{
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
|
||||
const auto b = Reshape(b_, D1D, D1D);
|
||||
const auto x = Reshape(x_, D1D, D1D, NE);
|
||||
auto y = Reshape(y_, D1D, D1D, NE);
|
||||
|
||||
MFEM_SHARED double sB[MD1*MD1];
|
||||
MFEM_SHARED double sm0[MD1*MD1];
|
||||
MFEM_SHARED double sm1[MD1*MD1];
|
||||
|
||||
kernels::internal::LoadB<MD1,MD1>(D1D,D1D,b,sB);
|
||||
|
||||
ConstDeviceMatrix B(sB, D1D,D1D);
|
||||
DeviceMatrix DD(sm0, MD1, MD1);
|
||||
DeviceMatrix DQ(sm1, MD1, MD1);
|
||||
DeviceMatrix QQ(sm0, MD1, MD1);
|
||||
|
||||
kernels::internal::LoadX(e,D1D,x,DD);
|
||||
kernels::internal::EvalX(D1D,D1D,B,DD,DQ);
|
||||
kernels::internal::EvalY(D1D,D1D,B,DQ,QQ);
|
||||
MFEM_SYNC_THREAD; // sync here to allow in-place evaluations
|
||||
MFEM_FOREACH_THREAD(qy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,D1D)
|
||||
{
|
||||
y(qx,qy,e) = QQ(qx,qy);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int MAX_D1D = 0>
|
||||
MFEM_HOST_DEVICE inline
|
||||
void DGMassBasis3D(const int e,
|
||||
const int NE,
|
||||
const double *b_,
|
||||
const double *x_,
|
||||
double *y_,
|
||||
const int d1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
|
||||
const auto b = Reshape(b_, D1D, D1D);
|
||||
const auto x = Reshape(x_, D1D, D1D, D1D, NE);
|
||||
auto y = Reshape(y_, D1D, D1D, D1D, NE);
|
||||
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
|
||||
MFEM_SHARED double sB[MD1*MD1];
|
||||
MFEM_SHARED double sm0[MD1*MD1*MD1];
|
||||
MFEM_SHARED double sm1[MD1*MD1*MD1];
|
||||
|
||||
kernels::internal::LoadB<MD1,MD1>(D1D,D1D,b,sB);
|
||||
|
||||
ConstDeviceMatrix B(sB, D1D,D1D);
|
||||
DeviceCube DDD(sm0, MD1,MD1,MD1);
|
||||
DeviceCube DDQ(sm1, MD1,MD1,MD1);
|
||||
DeviceCube DQQ(sm0, MD1,MD1,MD1);
|
||||
DeviceCube QQQ(sm1, MD1,MD1,MD1);
|
||||
|
||||
kernels::internal::LoadX(e,D1D,x,DDD);
|
||||
kernels::internal::EvalX(D1D,D1D,B,DDD,DDQ);
|
||||
kernels::internal::EvalY(D1D,D1D,B,DDQ,DQQ);
|
||||
kernels::internal::EvalZ(D1D,D1D,B,DQQ,QQQ);
|
||||
MFEM_SYNC_THREAD; // sync here to allow in-place evaluation
|
||||
MFEM_FOREACH_THREAD(qz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,D1D)
|
||||
{
|
||||
for (int qx = 0; qx < D1D; ++qx)
|
||||
{
|
||||
y(qx,qy,qz,e) = QQQ(qz,qy,qx);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
|
||||
template<int DIM, int T_D1D = 0, int MAX_D1D = 0>
|
||||
MFEM_HOST_DEVICE inline
|
||||
void DGMassBasis(const int e,
|
||||
const int NE,
|
||||
const double *b_,
|
||||
const double *x_,
|
||||
double *y_,
|
||||
const int d1d = 0)
|
||||
{
|
||||
if (DIM == 2)
|
||||
{
|
||||
DGMassBasis2D<T_D1D, MAX_D1D>(e, NE, b_, x_, y_, d1d);
|
||||
}
|
||||
else if (DIM == 3)
|
||||
{
|
||||
DGMassBasis3D<T_D1D, MAX_D1D>(e, NE, b_, x_, y_, d1d);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT_KERNEL("Dimension not supported.");
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace internal
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
+10
-6
@@ -53,8 +53,12 @@ public:
|
||||
|
||||
virtual int DofForGeometry(Geometry::Type GeomType) const = 0;
|
||||
|
||||
/** @brief Returns an array, say p, that maps a local permuted index i to
|
||||
a local base index: base_i = p[i]. */
|
||||
/** @brief Returns an array, say p, that maps a local permuted index i to a
|
||||
local base index: base_i = p[i].
|
||||
|
||||
@note Only provides information about interior dofs. See
|
||||
FiniteElementCollection::SubDofOrder if interior \a and boundary dof
|
||||
order is needed. */
|
||||
virtual const int *DofOrderForOrientation(Geometry::Type GeomType,
|
||||
int Or) const = 0;
|
||||
|
||||
@@ -95,10 +99,10 @@ public:
|
||||
| RT_ValTrace_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | VALUE | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
|
||||
| RT_Trace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | INTEGRAL | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
|
||||
| RT_ValTrace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | VALUE | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
|
||||
| L2_[DIM]_[ORDER] | L2 | * | 0 | VALUE | Discontinous L2 elements |
|
||||
| L2_T[BTYPE]_[DIM]_[ORDER] | L2 | * | 0 | VALUE | Discontinous L2 elements |
|
||||
| L2Int_[DIM]_[ORDER] | L2 | * | 0 | INTEGRAL | Discontinous L2 elements |
|
||||
| L2Int_T[BTYPE]_[DIM]_[ORDER] | L2 | * | 0 | INTEGRAL | Discontinous L2 elements |
|
||||
| L2_[DIM]_[ORDER] | L2 | * | 0 | VALUE | Discontinuous L2 elements |
|
||||
| L2_T[BTYPE]_[DIM]_[ORDER] | L2 | * | 0 | VALUE | Discontinuous L2 elements |
|
||||
| L2Int_[DIM]_[ORDER] | L2 | * | 0 | INTEGRAL | Discontinuous L2 elements |
|
||||
| L2Int_T[BTYPE]_[DIM]_[ORDER] | L2 | * | 0 | INTEGRAL | Discontinuous L2 elements |
|
||||
| DG_Iface_[DIM]_[ORDER] | - | * | 0 | VALUE | Discontinuous elements on the interface between mesh elements (faces) |
|
||||
| DG_Iface@[BTYPE]_[DIM]_[ORDER] | - | * | 0 | VALUE | Discontinuous elements on the interface between mesh elements (faces) |
|
||||
| DG_IntIface_[DIM]_[ORDER] | - | * | 0 | INTEGRAL | Discontinuous elements on the interface between mesh elements (faces) |
|
||||
|
||||
@@ -45,6 +45,7 @@
|
||||
#include "multigrid.hpp"
|
||||
#include "ceed/solvers/algebraic.hpp"
|
||||
#include "lor/lor.hpp"
|
||||
#include "dgmassinv.hpp"
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
#include "pfespace.hpp"
|
||||
|
||||
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Reference in New Issue
Block a user