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constcoeff-dev
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14d6a521a8 |
@@ -65,7 +65,7 @@ jobs:
|
||||
|
||||
- name: GHCR Login
|
||||
if: (github.event_name != 'pull_request')
|
||||
uses: docker/login-action@v2
|
||||
uses: docker/login-action@v3
|
||||
with:
|
||||
registry: ghcr.io
|
||||
username: ${{ github.actor }}
|
||||
|
||||
@@ -33,6 +33,7 @@ env:
|
||||
HYPRE_ARCHIVE: v2.19.0.tar.gz
|
||||
HYPRE_TOP_DIR: hypre-2.19.0
|
||||
METIS_ARCHIVE: metis-4.0.3.tar.gz
|
||||
METIS_ARCHIVE_MAC: metis-4.0.3-mac.tgz
|
||||
METIS_TOP_DIR: metis-4.0.3
|
||||
MFEM_TOP_DIR: mfem
|
||||
|
||||
@@ -52,6 +53,7 @@ jobs:
|
||||
mpi: [seq, par]
|
||||
build-system: [make, cmake]
|
||||
hypre-target: [int32]
|
||||
precision: [fp64]
|
||||
exclude:
|
||||
- os: ubuntu-latest
|
||||
build-system: cmake
|
||||
@@ -75,6 +77,8 @@ jobs:
|
||||
- os: ubuntu-latest
|
||||
target: dbg
|
||||
config-opts: 'CPPFLAGS+=-Og'
|
||||
- os: macos-latest
|
||||
codecov: NO
|
||||
- os: windows-latest
|
||||
codecov: NO
|
||||
- os: windows-latest
|
||||
@@ -87,6 +91,7 @@ jobs:
|
||||
mpi: par
|
||||
build-system: cmake
|
||||
hypre-target: int32
|
||||
precision: fp64
|
||||
# This option can be set to pass additional configuration options to
|
||||
# the MFEM configuration command.
|
||||
# config-opts: '-DCMAKE_VERBOSE_MAKEFILE=ON'
|
||||
@@ -96,7 +101,15 @@ jobs:
|
||||
mpi: par
|
||||
build-system: make
|
||||
hypre-target: int64
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
precision: fp64
|
||||
- os: ubuntu-latest
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: make
|
||||
hypre-target: int32
|
||||
precision: fp32
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}
|
||||
|
||||
runs-on: ${{ matrix.os }}
|
||||
|
||||
@@ -126,6 +139,17 @@ jobs:
|
||||
# Fetch the complete history for codecov to access commits ID
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Xcode version setup (MacOS)
|
||||
if: matrix.os == 'macos-latest'
|
||||
run: |
|
||||
XCODE_PATH="/Applications/Xcode_15.3.app"
|
||||
echo "> sudo xcode-select -s ${XCODE_PATH}"
|
||||
sudo xcode-select -s ${XCODE_PATH}
|
||||
echo "> g++ -v"
|
||||
g++ -v
|
||||
echo "> clang++ -v"
|
||||
clang++ -v
|
||||
|
||||
# Only get MPI if defined for the job.
|
||||
# TODO: It would be nice to have only one step, e.g. with a dedicated
|
||||
# action, but I (@adrienbernede) don't see how at the moment.
|
||||
@@ -169,25 +193,27 @@ jobs:
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-v2.5
|
||||
|
||||
- name: get hypre
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: ${{ matrix.hypre-target }}
|
||||
build-system: make
|
||||
precision: ${{ matrix.precision }}
|
||||
|
||||
- name: get hypre (Windows)
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
target: ${{ matrix.hypre-target }}
|
||||
build-system: cmake
|
||||
precision: ${{ matrix.precision }}
|
||||
|
||||
# Get Metis through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
@@ -197,13 +223,13 @@ jobs:
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
|
||||
|
||||
- name: install metis
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
uses: mfem/github-actions/build-metis@v2.5
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
archive: ${{ matrix.os != 'macos-latest' && env.METIS_ARCHIVE || env.METIS_ARCHIVE_MAC }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
- name: cache vcpkg (Windows)
|
||||
@@ -228,7 +254,7 @@ jobs:
|
||||
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
uses: mfem/github-actions/build-mfem@v2.5
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
with:
|
||||
@@ -240,6 +266,7 @@ jobs:
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: ${{ env.MFEM_TOP_DIR }}
|
||||
precision: ${{ matrix.precision }}
|
||||
config-options: ${{ matrix.config-opts }}
|
||||
library-only: ${{ matrix.target == 'dbg' && matrix.os != 'ubuntu-latest' }}
|
||||
|
||||
@@ -282,7 +309,7 @@ jobs:
|
||||
# Code coverage (process and upload reports)
|
||||
- name: codecov
|
||||
if: matrix.codecov == 'YES'
|
||||
uses: mfem/github-actions/upload-coverage@v2.4
|
||||
uses: mfem/github-actions/upload-coverage@v2.5
|
||||
with:
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
project_dir: ${{ env.MFEM_TOP_DIR }}
|
||||
|
||||
@@ -53,11 +53,11 @@ jobs:
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.2
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.5
|
||||
|
||||
- name: Get Hypre
|
||||
if: steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -68,18 +68,18 @@ jobs:
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
|
||||
|
||||
- name: Install Metis
|
||||
if: steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
uses: mfem/github-actions/build-metis@v2.5
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build-mfem
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
uses: mfem/github-actions/build-mfem@v2.5
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
|
||||
@@ -27,6 +27,12 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
|
||||
steps:
|
||||
- name: Temporary workaround for sanitizer crashes
|
||||
# See https://github.com/actions/runner-images/issues/9491
|
||||
# The issue should be fixed in the next runner image for Ubuntu 22.04,
|
||||
# see https://github.com/actions/runner-images/pull/9513
|
||||
run: sudo sysctl vm.mmap_rnd_bits=28
|
||||
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.12.1
|
||||
with:
|
||||
@@ -38,7 +44,7 @@ jobs:
|
||||
path: mfem
|
||||
|
||||
- name: MFEM Build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
uses: mfem/github-actions/build-mfem@v2.5
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
|
||||
+9
-5
@@ -57,6 +57,8 @@ examples/ex2[0-9]
|
||||
examples/ex2[0-9]p
|
||||
examples/ex3[0-9]
|
||||
examples/ex3[0-9]p
|
||||
examples/ex4[0-9]
|
||||
examples/ex4[0-9]p
|
||||
|
||||
examples/refined.mesh
|
||||
examples/displaced.mesh
|
||||
@@ -91,10 +93,6 @@ examples/ex16.mesh
|
||||
examples/ex16-mesh.*
|
||||
examples/ex16-init.*
|
||||
examples/ex16-final.*
|
||||
examples/vortex-mesh.*
|
||||
examples/vortex.mesh
|
||||
examples/vortex-?-init.*
|
||||
examples/vortex-?-final.*
|
||||
examples/deformation.*
|
||||
examples/pressure.*
|
||||
examples/ex20.dat
|
||||
@@ -120,6 +118,8 @@ examples/cond_mesh.*
|
||||
examples/port_mesh.*
|
||||
examples/port_mode.*
|
||||
|
||||
examples/euler-*
|
||||
|
||||
examples/amgx/ex1
|
||||
examples/amgx/ex1p
|
||||
examples/amgx/.logamgx
|
||||
@@ -234,7 +234,7 @@ miniapps/meshing/mobius-strip.mesh
|
||||
miniapps/meshing/klein-bottle.mesh
|
||||
miniapps/meshing/toroid-*.mesh
|
||||
miniapps/meshing/twist-*.mesh
|
||||
miniapps/meshing/mesh-explorer.mesh
|
||||
miniapps/meshing/mesh-explorer.mesh*
|
||||
miniapps/meshing/partitioning.txt
|
||||
miniapps/meshing/mesh-explorer-visit*
|
||||
miniapps/meshing/mesh-explorer-paraview/
|
||||
@@ -354,6 +354,8 @@ miniapps/parelag/MultilevelHcurlHdivSolver
|
||||
miniapps/parelag/*.mesh
|
||||
|
||||
miniapps/multidomain/multidomain
|
||||
miniapps/multidomain/multidomain_nd
|
||||
miniapps/multidomain/multidomain_rt
|
||||
miniapps/hooke/hooke
|
||||
|
||||
miniapps/dpg/diffusion
|
||||
@@ -369,6 +371,8 @@ miniapps/dpg/ParaView
|
||||
miniapps/spde/generate_random_field
|
||||
miniapps/spde/ParaView
|
||||
|
||||
miniapps/tribol/contact-patch-test
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
|
||||
@@ -13,6 +13,9 @@
|
||||
# at Lawrence Livermore National Laboratory (LLNL). This entire pipeline is
|
||||
# LLNL-specific!
|
||||
|
||||
include:
|
||||
- project: 'lc-templates/id_tokens'
|
||||
file: 'id_tokens.yml'
|
||||
|
||||
# The pipeline is divided into stages. Usually, jobs in a given stage wait for
|
||||
# the preceding stages to complete before to start. However, we sometimes use
|
||||
|
||||
@@ -9,6 +9,10 @@
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
include:
|
||||
- project: 'lc-templates/id_tokens'
|
||||
file: 'id_tokens.yml'
|
||||
|
||||
# We define the following GitLab pipeline variables:
|
||||
variables:
|
||||
|
||||
|
||||
@@ -35,9 +35,8 @@ variables:
|
||||
- when: on_success
|
||||
|
||||
# Lassen uses a different job scheduler (spectrum lsf) that does not allow
|
||||
# pre-allocation the same way slurm does. We use pdebug queue on lassen
|
||||
# to speed-up the allocation. However this would not be scalable to
|
||||
# multiple builds.
|
||||
# pre-allocation the same way slurm does. We use the pci queue on lassen
|
||||
# to speed-up the allocation.
|
||||
.build_and_test_on_lassen:
|
||||
extends: [.on_lassen]
|
||||
stage: build_and_test
|
||||
@@ -45,5 +44,5 @@ variables:
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
# Next script uses 'THREADS': leaving it empty --> it uses 'make all -j'
|
||||
- lalloc 1 -W 45 -q pdebug --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
- lalloc 1 -W 45 -q pci --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
needs: [setup]
|
||||
|
||||
@@ -52,4 +52,4 @@ variables:
|
||||
- echo ${JOBID}
|
||||
- echo ${MFEM_DATA_DIR}
|
||||
- echo ${SPEC}
|
||||
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 45 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) --reservation=ci -t 45 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
|
||||
|
||||
@@ -14,14 +14,14 @@ stages:
|
||||
- build_and_test
|
||||
- report
|
||||
|
||||
opt_mpi_cuda_xl_16_1_1_12:
|
||||
opt_mpi_cuda_gcc:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70"
|
||||
SPEC: "%gcc@8.3.1 +mpi +cuda cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
opt_mpi_cuda_hypre_cuda_xl:
|
||||
opt_mpi_cuda_hypre_cuda_gcc:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
|
||||
SPEC: "%gcc@8.3.1 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
# Jobs report
|
||||
|
||||
@@ -87,7 +87,7 @@ report_baseline:
|
||||
# We create an autotest-email.html file, because that's how we signal
|
||||
# that there was an error / diff (temporary).
|
||||
if [[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
|
||||
[[ -f ${rundir}/${BASELINE_TEST}-${SYS_TYPE}.diff ]]; then
|
||||
[[ -f ${rundir}/${BASELINE_TEST}-${MACHINE_NAME}.diff ]]; then
|
||||
cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
|
||||
fi
|
||||
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
|
||||
@@ -14,6 +14,9 @@
|
||||
# locals
|
||||
glob_err=${BASELINE_TEST}.err
|
||||
base=${BASELINE_TEST}-${SYS_TYPE}
|
||||
if [[ "${MACHINE_NAME}" == "quartz" ]]; then
|
||||
base="${BASELINE_TEST}-${MACHINE_NAME}"
|
||||
fi
|
||||
base_diff=${base}.diff
|
||||
base_patch=${base}.patch
|
||||
base_out=${base}.out
|
||||
@@ -29,11 +32,11 @@ mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
|
||||
|
||||
# run
|
||||
if [[ "${MACHINE_NAME}" == "quartz" || "${MACHINE_NAME}" == "ruby" ]]; then
|
||||
salloc --nodes=1 -p pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
salloc --nodes=1 --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "corona" ]]; then
|
||||
salloc --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "lassen" ]]; then
|
||||
lalloc 1 -q pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
lalloc 1 -q pci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
else
|
||||
echo "Unknown machine: MACHINE_NAME=$MACHINE_NAME"
|
||||
exit 1
|
||||
|
||||
@@ -8,53 +8,111 @@
|
||||
https://mfem.org
|
||||
|
||||
|
||||
Version 4.6.1 (development)
|
||||
Version 4.7.1 (development)
|
||||
===========================
|
||||
|
||||
- Added an MFEM example for the eikonal equation. This new solver is based on
|
||||
the proximal Galerkin method introduced by Keith and Surowiec.
|
||||
|
||||
- API change: in class GridFunction, 'fec' was renamed to 'fec_owned'.
|
||||
|
||||
|
||||
Version 4.7, released on May 7, 2024
|
||||
====================================
|
||||
|
||||
- Added support for single precision (with corresponding hypre build). The MFEM
|
||||
floating point type was generalized from `double` to `real_t`. For details see
|
||||
https://github.com/orgs/mfem/discussions/4207.
|
||||
|
||||
Meshing improvements
|
||||
--------------------
|
||||
- Added the capability to partition (big) serial meshes in serial code, see the
|
||||
new classes MeshPartitioner and MeshPart. This capability is also exposed as a
|
||||
menu option in the mesh-explorer miniapp in miniapps/meshing.
|
||||
|
||||
- Added named attribute sets and basic supporting methods to the Mesh class as a
|
||||
convenient means of referring to sets of domain or boundary attribute numbers.
|
||||
See the new Example 39/39p and data/compass.mesh.
|
||||
|
||||
- Introduced formulas for refinement of patches in NURBS meshes. Refinement by
|
||||
arbitrary integer factors is also enabled, e.g. in the mesh-explorer miniapp.
|
||||
NURBS coarsening and knot removal are also introduced.
|
||||
|
||||
- Added support for internal boundary elements in nonconforming meshes.
|
||||
|
||||
- The ReadCubit Genesis mesh importer has been rewritten to improve readability.
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Introduced support for higher order non conformal Nedelec elements on
|
||||
simplices in ParMesh.
|
||||
- Introduced support for internal boundary elements in nonconformal adapted
|
||||
meshes.
|
||||
- Added a new nonlinear integrator, `HyperbolicFormIntegrator` that implements
|
||||
both element-wise weak divergence and face-wise numerical flux for a general
|
||||
system of hyperbolic conservation laws. To use the integrator for a specific
|
||||
flux function, users can define a derived class of `FluxFunction`. Currently,
|
||||
advection, Burgers, shallow-water and Euler equations (see Example 18/18p) are
|
||||
available.
|
||||
|
||||
- Added functionality for construction of cut-surface and cut-volume
|
||||
IntegrationRules through a moment-fitting approach. The cut is specified by
|
||||
the zero level set of a Coefficient. See fem/intrules_cut.hpp and Example 38.
|
||||
- Added a capability to construct cut-surface and cut-volume IntegrationRules
|
||||
through a moment-fitting approach. The cut is specified by the zero level set
|
||||
of a Coefficient. See fem/intrules_cut.hpp and the new Example 38.
|
||||
|
||||
- Introduced support for high-order nonconforming Nedelec elements on simplices.
|
||||
|
||||
GPU computing
|
||||
-------------
|
||||
- Added partial assembly and GPU support for the DG diffusion integrator.
|
||||
|
||||
- Efficient GPU-accelerated LOR assembly is now supported on surface meshes.
|
||||
|
||||
- Added functionality to automatically configure hypre's compute policy to match
|
||||
MFEM's compute policy when hypre is built with GPU support. Requires version
|
||||
hypre-2.31.0 or later.
|
||||
|
||||
GPU support
|
||||
----------------------------
|
||||
- Added support for full assembly on simplices.
|
||||
- Added functionality for BilinearFormIntegrators to use kernels that work for both
|
||||
tensor and unstructured elements.
|
||||
- Added partial assembly for linear elasticity. Does not use sum factorization for now.
|
||||
|
||||
- Added partial assembly for linear elasticity (no sum factorization for now).
|
||||
|
||||
- Added functionality for BilinearFormIntegrators to use kernels that work for
|
||||
both tensor and unstructured elements.
|
||||
|
||||
- The RAJA backend will use `seq_exec` for serial loop execution when RAJA
|
||||
v2023.06.00 and beyond is detected as `loop_exec` is deprecated.
|
||||
|
||||
- API change: The macro MFEM_HYPRE_FORALL (from hypre.hpp) which was intended
|
||||
for internal use, has been removed and replaced by the function template
|
||||
mfem::hypre_forall in general/forall.hpp.
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new block solver in miniapp/solvers for the Darcy problem.
|
||||
The new solver is based on a Bramble-Pasciak preconditioning. User can
|
||||
use and implement their own preconditioner for the mass matrix.
|
||||
- Added a new miniapp illustrating elastic contact based on the Tribol library,
|
||||
(https://github.com/LLNL/Tribol). See miniapps/tribol.
|
||||
|
||||
- Added miniapp to demonstrate new elasticity integrator and unstructured element GPU support,
|
||||
and a block diagonal preconditioner using low order refinement. Allows comparison with
|
||||
currently existing legacy mode integrator. See miniapps/solvers/lor_elast.
|
||||
- Added a miniapp to demonstrate low order refined (LOR) block preconditioning
|
||||
for linear elasticity on GPUs. See miniapps/solvers/lor_elast.
|
||||
|
||||
- Added a new block solver in miniapp/solvers for the Darcy problem. The new
|
||||
solver is based on a Bramble-Pasciak preconditioning. User can use and
|
||||
implement their own preconditioner for the mass matrix.
|
||||
|
||||
- Added a small miniapp for printing the shape functions of a KnotVector. See
|
||||
miniapps/nurbs/nurbs_printfunc.cpp.
|
||||
|
||||
- Added two new example codes: 38 and 39/39p described above. Substantially
|
||||
updated Example 18/18p.
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- The ReadCubit Genesis mesh importer has been rewritten to improve readability.
|
||||
|
||||
- Updated the Doxygen documentation style, which now requires Doxygen version
|
||||
1.9.8 or later. See the doc/ directory.
|
||||
|
||||
- Improved thread safety for global variables in the library, for example
|
||||
IntegrationRules IntRules, RefinedIntRules, GeometryRefiner
|
||||
GlobGeometryRefiner, and FiniteElement::dof2quad_array.
|
||||
- Improved thread safety for global variables in the library, e.g. for IntRules,
|
||||
RefinedIntRules, GlobGeometryRefiner, and FiniteElement::dof2quad_array.
|
||||
|
||||
- PETSc integration now generally requires PETSc version 3.21 or later, though
|
||||
depending on the functionality older versions may still work.
|
||||
|
||||
- Various other simplifications, extensions, and bugfixes in the code.
|
||||
|
||||
- Added GSLIB-based gather-scatter operator.
|
||||
|
||||
|
||||
Version 4.6, released on September 27, 2023
|
||||
@@ -76,7 +134,6 @@ Meshing improvements
|
||||
* The edge to knot map for NURBS meshes can be determined automatically. It is
|
||||
no longer needed to specify this in the NURBS mesh.
|
||||
* Added curve interpolation method for NURBS.
|
||||
* Added new small miniapp for printing of shape functions of a KnotVector
|
||||
* See miniapps/nurbs for example meshes and miniapps.
|
||||
|
||||
Discretization improvements
|
||||
@@ -123,8 +180,6 @@ Linear and nonlinear solvers
|
||||
|
||||
- Added HIP support to the PETSc and SUNDIALS interfaces.
|
||||
|
||||
- Efficient GPU-accelerated LOR assembly now supports surface meshes.
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new H(div) solver miniapp demonstrating the use of a matrix-free
|
||||
|
||||
+26
-3
@@ -58,7 +58,7 @@ project(mfem NONE)
|
||||
# Current version of MFEM, see also `makefile`.
|
||||
# mfem_VERSION = (string)
|
||||
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
|
||||
set(${PROJECT_NAME}_VERSION 4.6.1)
|
||||
set(${PROJECT_NAME}_VERSION 4.7.1)
|
||||
|
||||
# Prohibit in-source build
|
||||
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
|
||||
@@ -87,10 +87,11 @@ if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
|
||||
# Just needed to find the MPI_Fortran libraries to link with
|
||||
set(XSDK_ENABLE_Fortran ON)
|
||||
endif()
|
||||
# SUNDIALS, STRUMPACK, Ginkgo, RAJA and Umpire require C++14:
|
||||
# SUNDIALS, STRUMPACK, Ginkgo, Tribol, RAJA and Umpire require C++14:
|
||||
if ((MFEM_USE_SUNDIALS OR
|
||||
MFEM_USE_STRUMPACK OR
|
||||
MFEM_USE_GINKGO OR
|
||||
MFEM_USE_TRIBOL OR
|
||||
MFEM_USE_RAJA OR
|
||||
MFEM_USE_UMPIRE) AND
|
||||
("${CMAKE_CXX_STANDARD}" LESS "14"))
|
||||
@@ -183,6 +184,19 @@ endif()
|
||||
# Process configuration options
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
# MFEM_PRECISION -> MFEM_USE_SINGLE, MFEM_USE_DOUBLE
|
||||
if (MFEM_PRECISION MATCHES "^(double|Double|DOUBLE)$")
|
||||
set(MFEM_USE_SINGLE OFF)
|
||||
set(MFEM_USE_DOUBLE ON)
|
||||
elseif (MFEM_PRECISION MATCHES "^(single|Single|SINGLE)$")
|
||||
set(MFEM_USE_SINGLE ON)
|
||||
set(MFEM_USE_DOUBLE OFF)
|
||||
else()
|
||||
message(FATAL_ERROR " *** Invalid floating-point precision: "
|
||||
"MFEM_PRECISION = ${MFEM_PRECISION}")
|
||||
endif()
|
||||
message(STATUS "Floating-point precision: MFEM_PRECISION = ${MFEM_PRECISION}")
|
||||
|
||||
# MFEM_DEBUG
|
||||
if (CMAKE_BUILD_TYPE MATCHES "Debug|debug|DEBUG")
|
||||
set(MFEM_DEBUG ON)
|
||||
@@ -490,6 +504,15 @@ if (MFEM_USE_PARELAG)
|
||||
find_package(PARELAG REQUIRED)
|
||||
endif()
|
||||
|
||||
# Tribol
|
||||
if (MFEM_USE_TRIBOL)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(Tribol REQUIRED tribol redecomp)
|
||||
else()
|
||||
message(FATAL_ERROR " *** Tribol requires that MPI be enabled.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Enzyme
|
||||
if (MFEM_USE_ENZYME)
|
||||
find_package(ENZYME REQUIRED)
|
||||
@@ -535,7 +558,7 @@ set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
|
||||
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
|
||||
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
|
||||
ADIOS2 CUSPARSE MKL_CPARDISO MKL_PARDISO AMGX CALIPER CODIPACK
|
||||
BENCHMARK PARELAG MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
BENCHMARK PARELAG TRIBOL MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
|
||||
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
|
||||
set(TPL_LIBRARIES "")
|
||||
|
||||
+4
-1
@@ -151,7 +151,8 @@ The MFEM source code has the following structure:
|
||||
│ ├── solvers
|
||||
│ ├── spde
|
||||
│ ├── tools
|
||||
│ └── toys
|
||||
│ ├── toys
|
||||
│ └── tribol
|
||||
└── tests
|
||||
├── benchmarks
|
||||
├── convergence
|
||||
@@ -362,6 +363,8 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
conflicted files in the commit message.
|
||||
- All significant new features and changes should be documented in CHANGELOG.
|
||||
- New examples and miniapps should have documentation on the MFEM webpage.
|
||||
- The general floating-point type `real_t` should be used, rather than
|
||||
`float` or `double`, except in special cases where only one is possible.
|
||||
|
||||
|
||||
### Pull Requests
|
||||
|
||||
@@ -75,6 +75,8 @@ and miniapps. See https://glvis.org and https://mfem.org/building.
|
||||
|
||||
Quick start with GNU make
|
||||
=========================
|
||||
See also: https://mfem.org/building
|
||||
|
||||
Serial build:
|
||||
make serial -j 4
|
||||
|
||||
@@ -83,6 +85,7 @@ Parallel build:
|
||||
(build METIS 4 in ../metis-4.0 relative to mfem/)
|
||||
(build hypre in ../hypre relative to mfem/)
|
||||
make parallel -j 4
|
||||
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
|
||||
|
||||
CUDA build:
|
||||
make cuda -j 4
|
||||
@@ -116,6 +119,7 @@ Parallel build:
|
||||
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
|
||||
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES
|
||||
make -j 4
|
||||
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
|
||||
|
||||
CUDA build:
|
||||
(this build requires CMake 3.8 or newer)
|
||||
@@ -284,6 +288,15 @@ MFEM_USE_METIS = YES/NO
|
||||
option in the library will be Cartesian partitioning with box meshes, and
|
||||
thus most of the parallel examples and miniapps will fail.
|
||||
|
||||
MFEM_PRECISION = double/Double/DOUBLE/single/Single/SINGLE
|
||||
Use single (float type) or double floating-point precision. In the
|
||||
configuration header 'config/_config.hpp' this option is represented by
|
||||
defining exactly one of the macros: MFEM_USE_DOUBLE, or MFEM_USE_SINGLE.
|
||||
In the exported config files 'config.mk' and 'MFEMConfig.cmake', the option
|
||||
is represented by the variables MFEM_USE_DOUBLE and MFEM_USE_SINGLE defined
|
||||
as YES/NO (make) or ON/OFF (cmake). For more details see
|
||||
https://github.com/orgs/mfem/discussions/4207
|
||||
|
||||
MFEM_DEBUG = YES/NO
|
||||
Choose debug/optimized build. The debug build enables a number of messages
|
||||
and consistency checks that may simplify bug-hunting.
|
||||
@@ -562,6 +575,11 @@ MFEM_USE_PARELAG = YES/NO
|
||||
use ParELAG. In fact, ParELAG is dependent on MFEM. Therefore, this option
|
||||
currently only concerns the miniapps.
|
||||
|
||||
MFEM_USE_TRIBOL = YES/NO
|
||||
Enables the miniapps that use the Tribol library. MFEM does not currently
|
||||
use Tribol. In fact, Tribol is dependent on MFEM. Therefore, this option
|
||||
currently only concerns the miniapps.
|
||||
|
||||
MFEM_USE_ENZYME = YES/NO
|
||||
Enables automatic differentiation support through the LLVM plugin Enzyme.
|
||||
This requires the compiler to be set to clang (>=14.0.0). We also advise to
|
||||
@@ -598,9 +616,13 @@ The specific libraries and their options are:
|
||||
HYPRE >= 2.20.0 (HYPRE built with '--enable-mixedint')
|
||||
HYPRE >= 2.22.1 (HYPRE built with CUDA)
|
||||
HYPRE >= 2.23.0 (HYPRE built with HIP)
|
||||
HYPRE >= 2.31.0 (runtime selectable HYPRE execution on CPU/GPU)
|
||||
|
||||
- METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
|
||||
MFEM_USE_METIS_5 = YES (default is to use METIS 4).
|
||||
MFEM_USE_METIS_5 = YES (default is to use METIS 4). For building instructions,
|
||||
see the following:
|
||||
- METIS 4.0.3: https://mfem.org/building/#parallel-mpi-version-of-mfem
|
||||
- METIS 5.1.0: https://mfem.org/building/#parallel-build-using-metis-5
|
||||
URL: https://github.com/mfem/tpls (MFEM mirror, see above)
|
||||
Options: METIS_OPT, METIS_LIB.
|
||||
Versions: METIS 4.0.3 or 5.1.0.
|
||||
@@ -692,9 +714,10 @@ The specific libraries and their options are:
|
||||
Options: NETCDF_OPT, NETCDF_LIB.
|
||||
Versions: NetCDF >= 4.4.0.
|
||||
|
||||
- PETSc (optional), used when MFEM_USE_PETSC = YES. Version 3.8 or higher of
|
||||
the PETSC dev branch is required. The MFEM and PETSc builds can share common
|
||||
libraries, e.g., hypre and SUNDIALS. Here's an example configuration, assuming
|
||||
- PETSc (optional), used when MFEM_USE_PETSC = YES. Version 3.21 or higher of
|
||||
the PETSC dev branch is required, though depending on the functionality older
|
||||
versions may work too. The MFEM and PETSc builds can share common libraries,
|
||||
e.g., hypre and SUNDIALS. Here's an example configuration, assuming
|
||||
PETSc has been cloned on the same level as mfem and hypre:
|
||||
./configure --download-fblaslapack=yes --download-scalapack=yes \
|
||||
--download-mumps=yes --download-suitesparse=yes \
|
||||
@@ -704,9 +727,7 @@ The specific libraries and their options are:
|
||||
CFLAGS to allow proper parsing of the hipsparse header under C.
|
||||
URL: https://www.mcs.anl.gov/petsc
|
||||
Options: PETSC_OPT, PETSC_LIB.
|
||||
Versions: PETSc >= 3.8.0 (PETSc build without CUDA/HIP)
|
||||
PETSc >= 3.15.0 (PETSc built with CUDA)
|
||||
PETSc >= 3.19.0 (PETSc built with HIP, older versions may work too)
|
||||
Versions: PETSc >= 3.21.0, older versions may work too.
|
||||
|
||||
- SLEPc (optional), used when MFEM_USE_SLEPC = YES. SLEPc depends on PETSc and
|
||||
uses some of the PETSc options when compiled.
|
||||
@@ -849,6 +870,10 @@ The specific libraries and their options are:
|
||||
URL: https://github.com/LLNL/parelag
|
||||
Options: PARELAG_DIR, PARELAG_OPT, PARELAG_LIB.
|
||||
|
||||
- Tribol, used when MFEM_USE_TRIBOL = YES.
|
||||
URL: https://github.com/LLNL/Tribol
|
||||
Options: TRIBOL_DIR, TRIBOL_OPT, TRIBOL_LIB.
|
||||
|
||||
- Enzyme, used when MFEM_USE_ENZYME = YES. Requires LLVM/Clang >= 14.0.0.
|
||||
URL: https://github.com/EnzymeAD/Enzyme
|
||||
Options: ENZYME_DIR, ENZYME_OPT, ENZYME_LIB.
|
||||
@@ -959,6 +984,7 @@ The following options are equivalent to the GNU make options with the same name:
|
||||
|
||||
MFEM_USE_MPI
|
||||
MFEM_USE_METIS - Set to ${MFEM_USE_MPI}, can be overwritten.
|
||||
MFEM_PRECISION
|
||||
MFEM_USE_LIBUNWIND
|
||||
MFEM_USE_LAPACK
|
||||
MFEM_THREAD_SAFE
|
||||
@@ -992,6 +1018,7 @@ MFEM_USE_CALIPER
|
||||
MFEM_USE_FMS
|
||||
MFEM_USE_BENCHMARK
|
||||
MFEM_USE_PARELAG
|
||||
MFEM_USE_TRIBOL
|
||||
MFEM_USE_ENZYME
|
||||
|
||||
The following options are CMake specific:
|
||||
|
||||
@@ -287,3 +287,7 @@ ENDIF()
|
||||
IF (DEFINED TPL_ENABLE_PARELAG)
|
||||
SET(MFEM_USE_PARELAG ${TPL_ENABLE_PARELAG} CACHE BOOL "Enable ParELAG" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_TRIBOL)
|
||||
SET(MFEM_USE_TRIBOL ${TPL_ENABLE_TRIBOL} CACHE BOOL "Enable Tribol" FORCE)
|
||||
ENDIF()
|
||||
|
||||
@@ -18,6 +18,8 @@ set(MFEM_GIT_STRING "@MFEM_GIT_STRING@")
|
||||
set(MFEM_USE_MPI @MFEM_USE_MPI@)
|
||||
set(MFEM_USE_METIS @MFEM_USE_METIS@)
|
||||
set(MFEM_USE_METIS_5 @MFEM_USE_METIS_5@)
|
||||
set(MFEM_USE_DOUBLE @MFEM_USE_DOUBLE@)
|
||||
set(MFEM_USE_SINGLE @MFEM_USE_SINGLE@)
|
||||
set(MFEM_DEBUG @MFEM_DEBUG@)
|
||||
set(MFEM_USE_EXCEPTIONS @MFEM_USE_EXCEPTIONS@)
|
||||
set(MFEM_USE_ZLIB @MFEM_USE_ZLIB@)
|
||||
@@ -62,6 +64,7 @@ set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
|
||||
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
|
||||
set(MFEM_USE_BENCHMARK @MFEM_USE_BENCHMARK@)
|
||||
set(MFEM_USE_PARELAG @MFEM_USE_PARELAG@)
|
||||
set(MFEM_USE_TRIBOL @MFEM_USE_TRIBOL@)
|
||||
set(MFEM_USE_ENZYME @MFEM_USE_ENZYME@)
|
||||
|
||||
set(MFEM_CXX_COMPILER "@CMAKE_CXX_COMPILER@")
|
||||
|
||||
@@ -46,6 +46,12 @@
|
||||
// Requires an MPI compiler, and the libraries HYPRE and METIS.
|
||||
#cmakedefine MFEM_USE_MPI
|
||||
|
||||
// Use double-precision floating point type
|
||||
#cmakedefine MFEM_USE_DOUBLE
|
||||
|
||||
// Use single-precision floating point type
|
||||
#cmakedefine MFEM_USE_SINGLE
|
||||
|
||||
// Enable debug checks in MFEM.
|
||||
#cmakedefine MFEM_DEBUG
|
||||
|
||||
|
||||
@@ -18,4 +18,13 @@ include(MfemCmakeUtilities)
|
||||
# Note: components are enabled based on the find_package() parameters.
|
||||
mfem_find_package(Axom AXOM AXOM_DIR "include" "" "lib" ""
|
||||
"Paths to headers required by Axom." "Libraries required by Axom."
|
||||
ADD_COMPONENT Axom "include" axom/config.hpp "lib" axom)
|
||||
ADD_COMPONENT core "include" axom/core.hpp "lib" axom_core
|
||||
ADD_COMPONENT inlet "include" axom/inlet.hpp "lib" axom_inlet
|
||||
ADD_COMPONENT klee "include" axom/klee.hpp "lib" axom_klee
|
||||
ADD_COMPONENT lumberjack "include" axom/lumberjack.hpp "lib" axom_lumberjack
|
||||
ADD_COMPONENT mint "include" axom/mint.hpp "lib" axom_mint
|
||||
ADD_COMPONENT multimat "include" axom/multimat.hpp "lib" axom_multimat
|
||||
ADD_COMPONENT quest "include" axom/quest.hpp "lib" axom_quest
|
||||
ADD_COMPONENT sidre "include" axom/sidre.hpp "lib" axom_sidre
|
||||
ADD_COMPONENT slam "include" axom/slam.hpp "lib" axom_slam
|
||||
ADD_COMPONENT slic "include" axom/slic.hpp "lib" axom_slic)
|
||||
|
||||
@@ -36,7 +36,11 @@ include(MfemCmakeUtilities)
|
||||
mfem_find_package(Conduit CONDUIT CONDUIT_DIR
|
||||
"include;include/conduit" conduit.hpp "lib" conduit
|
||||
"Paths to headers required by Conduit." "Libraries required by Conduit."
|
||||
ADD_COMPONENT blueprint
|
||||
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint
|
||||
ADD_COMPONENT blueprint_mpi
|
||||
"include;include/conduit" conduit_blueprint_mpi.hpp "lib" conduit_blueprint_mpi
|
||||
ADD_COMPONENT relay
|
||||
"include;include/conduit" conduit_relay.hpp "lib" conduit_relay
|
||||
ADD_COMPONENT blueprint
|
||||
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
|
||||
ADD_COMPONENT relay_mpi
|
||||
"include;include/conduit" conduit_relay_mpi.hpp "lib" conduit_relay_mpi)
|
||||
|
||||
@@ -79,7 +79,9 @@ if (HYPRE_FOUND AND HYPRE_USING_CUDA)
|
||||
find_package(CUDAToolkit REQUIRED)
|
||||
get_target_property(CUSPARSE_LIBRARIES CUDA::cusparse LOCATION)
|
||||
get_target_property(CURAND_LIBRARIES CUDA::curand LOCATION)
|
||||
list(APPEND HYPRE_LIBRARIES ${CUSPARSE_LIBRARIES} ${CURAND_LIBRARIES})
|
||||
get_target_property(CUBLAS_LIBRARIES CUDA::cublas LOCATION)
|
||||
list(APPEND HYPRE_LIBRARIES ${CUSPARSE_LIBRARIES} ${CURAND_LIBRARIES}
|
||||
${CUBLAS_LIBRARIES})
|
||||
set(HYPRE_LIBRARIES ${HYPRE_LIBRARIES} CACHE STRING
|
||||
"HYPRE libraries + dependencies." FORCE)
|
||||
message(STATUS "Updated HYPRE_LIBRARIES: ${HYPRE_LIBRARIES}")
|
||||
|
||||
@@ -16,12 +16,22 @@
|
||||
# - MUMPS_VERSION
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
|
||||
# Toggle which precision of MUMPS to use depending on the precision of MFEM.
|
||||
if (MFEM_USE_DOUBLE)
|
||||
set(_mumps_header dmumps_c.h)
|
||||
set(_mumps_lib dmumps)
|
||||
elseif(MFEM_USE_SINGLE)
|
||||
set(_mumps_header smumps_c.h)
|
||||
set(_mumps_lib smumps)
|
||||
endif()
|
||||
|
||||
mfem_find_package(MUMPS MUMPS MUMPS_DIR
|
||||
"include" dmumps_c.h "lib" dmumps
|
||||
"include" ${_mumps_header} "lib" ${_mumps_lib}
|
||||
"Paths to headers required by MUMPS."
|
||||
"Libraries required by MUMPS."
|
||||
ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
|
||||
ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
|
||||
ADD_COMPONENT mumps_common "include" ${_mumps_header} "lib" mumps_common
|
||||
ADD_COMPONENT pord "include" ${_mumps_header} "lib" pord)
|
||||
|
||||
if (MUMPS_FOUND AND (NOT MUMPS_VERSION))
|
||||
try_run(MUMPS_VERSION_RUN_RESULT MUMPS_VERSION_COMPILE_RESULT
|
||||
|
||||
@@ -0,0 +1,22 @@
|
||||
# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - TRIBOL_FOUND
|
||||
# - TRIBOL_LIBRARIES
|
||||
# - TRIBOL_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
# Note: components are enabled based on the find_package() parameters.
|
||||
mfem_find_package(Tribol TRIBOL TRIBOL_DIR "include" tribol/config.hpp "lib" tribol
|
||||
"Paths to headers required by Tribol." "Libraries required by Tribol."
|
||||
ADD_COMPONENT redecomp
|
||||
"include" redecomp/redecomp.hpp "lib" redecomp)
|
||||
@@ -842,16 +842,17 @@ function(mfem_export_mk_files)
|
||||
|
||||
# Convert Boolean vars to YES/NO without writing the values to cache
|
||||
set(CONFIG_MK_BOOL_VARS MFEM_USE_MPI MFEM_USE_METIS MFEM_USE_METIS_5
|
||||
MFEM_DEBUG MFEM_USE_EXCEPTIONS MFEM_USE_ZLIB MFEM_USE_LIBUNWIND
|
||||
MFEM_USE_LAPACK MFEM_THREAD_SAFE MFEM_USE_LEGACY_OPENMP MFEM_USE_OPENMP
|
||||
MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_SUITESPARSE
|
||||
MFEM_USE_SUPERLU MFEM_USE_SUPERLU5 MFEM_USE_MUMPS MFEM_USE_STRUMPACK
|
||||
MFEM_USE_GINKGO MFEM_USE_AMGX MFEM_USE_GNUTLS MFEM_USE_NETCDF
|
||||
MFEM_USE_PETSC MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE MFEM_USE_FMS
|
||||
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_HIOP MFEM_USE_GSLIB MFEM_USE_CUDA
|
||||
MFEM_USE_HIP MFEM_USE_RAJA MFEM_USE_OCCA MFEM_USE_CEED MFEM_USE_CALIPER
|
||||
MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2 MFEM_USE_MKL_CPARDISO
|
||||
MFEM_USE_ADFORWARD MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG
|
||||
MFEM_USE_SINGLE MFEM_USE_DOUBLE MFEM_DEBUG MFEM_USE_EXCEPTIONS
|
||||
MFEM_USE_ZLIB MFEM_USE_LIBUNWIND MFEM_USE_LAPACK MFEM_THREAD_SAFE
|
||||
MFEM_USE_LEGACY_OPENMP MFEM_USE_OPENMP MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS
|
||||
MFEM_USE_SUITESPARSE MFEM_USE_SUPERLU MFEM_USE_SUPERLU5 MFEM_USE_MUMPS
|
||||
MFEM_USE_STRUMPACK MFEM_USE_GINKGO MFEM_USE_AMGX MFEM_USE_GNUTLS
|
||||
MFEM_USE_NETCDF MFEM_USE_PETSC MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE
|
||||
MFEM_USE_FMS MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_HIOP MFEM_USE_GSLIB
|
||||
MFEM_USE_CUDA MFEM_USE_HIP MFEM_USE_RAJA MFEM_USE_OCCA MFEM_USE_CEED
|
||||
MFEM_USE_CALIPER MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2
|
||||
MFEM_USE_MKL_CPARDISO MFEM_USE_MKL_PARDISO MFEM_USE_ADFORWARD
|
||||
MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG MFEM_USE_TRIBOL
|
||||
MFEM_USE_MOONOLITH MFEM_USE_ALGOIM MFEM_USE_ENZYME)
|
||||
foreach(var ${CONFIG_MK_BOOL_VARS})
|
||||
if (${var})
|
||||
|
||||
@@ -23,6 +23,62 @@
|
||||
#include "_config.hpp"
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
#if (defined(MFEM_USE_CUDA) && defined(__CUDACC__)) || \
|
||||
(defined(MFEM_USE_HIP) && defined(__HIPCC__))
|
||||
#define MFEM_HOST_DEVICE __host__ __device__
|
||||
#else
|
||||
#define MFEM_HOST_DEVICE
|
||||
#endif
|
||||
|
||||
// MFEM precision configuration
|
||||
|
||||
#if defined MFEM_USE_SINGLE && defined MFEM_USE_DOUBLE
|
||||
#error "DOUBLE and SINGLE precision cannot both be specified"
|
||||
#endif
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
typedef float real_t;
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
typedef double real_t;
|
||||
#else
|
||||
#error "Either DOUBLE or SINGLE precision must be specified"
|
||||
#endif
|
||||
|
||||
MFEM_HOST_DEVICE
|
||||
constexpr real_t operator""_r(long double v)
|
||||
{
|
||||
return static_cast<real_t>(v);
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE
|
||||
constexpr real_t operator""_r(unsigned long long v)
|
||||
{
|
||||
return static_cast<real_t>(v);
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
// Return value for main function in examples that should be skipped by testing
|
||||
// in some case. This return value prevents failures in testing.
|
||||
#define MFEM_SKIP_RETURN_VALUE 242
|
||||
|
||||
// Request a global object to be instantiated for each thread in its TLS.
|
||||
#define MFEM_THREAD_LOCAL thread_local
|
||||
|
||||
// MFEM_DEPRECATED macro to mark obsolete functions and methods
|
||||
// see https://stackoverflow.com/questions/295120/c-mark-as-deprecated
|
||||
#if defined(__GNUC__) || defined(__clang__)
|
||||
#define MFEM_DEPRECATED __attribute__((deprecated))
|
||||
#elif defined(_MSC_VER)
|
||||
#define MFEM_DEPRECATED __declspec(deprecated)
|
||||
#else
|
||||
#pragma message("WARNING: You need to implement MFEM_DEPRECATED for this compiler")
|
||||
#define MFEM_DEPRECATED
|
||||
#endif
|
||||
|
||||
// Common configuration macros
|
||||
|
||||
#if (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 7)) || defined(__clang__)
|
||||
@@ -64,6 +120,15 @@
|
||||
|
||||
// Check dependencies:
|
||||
|
||||
// Define MFEM_MPI_REAL_T to be the appropriate MPI real type
|
||||
#ifdef MFEM_USE_MPI
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
#define MFEM_MPI_REAL_T MPI_FLOAT
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
#define MFEM_MPI_REAL_T MPI_DOUBLE
|
||||
#endif
|
||||
#endif
|
||||
|
||||
// Options that require MPI
|
||||
#ifndef MFEM_USE_MPI
|
||||
#ifdef MFEM_USE_SUPERLU
|
||||
|
||||
@@ -46,6 +46,12 @@
|
||||
// Requires an MPI compiler, and the libraries HYPRE and METIS.
|
||||
// #define MFEM_USE_MPI
|
||||
|
||||
// Use double-precision floating point type
|
||||
// #define MFEM_USE_DOUBLE
|
||||
|
||||
// Use single-precision floating point type
|
||||
// #define MFEM_USE_SINGLE
|
||||
|
||||
// Enable debug checks in MFEM.
|
||||
// #define MFEM_DEBUG
|
||||
|
||||
|
||||
@@ -18,6 +18,8 @@ MFEM_GIT_STRING = @MFEM_GIT_STRING@
|
||||
MFEM_USE_MPI = @MFEM_USE_MPI@
|
||||
MFEM_USE_METIS = @MFEM_USE_METIS@
|
||||
MFEM_USE_METIS_5 = @MFEM_USE_METIS_5@
|
||||
MFEM_USE_DOUBLE = @MFEM_USE_DOUBLE@
|
||||
MFEM_USE_SINGLE = @MFEM_USE_SINGLE@
|
||||
MFEM_DEBUG = @MFEM_DEBUG@
|
||||
MFEM_USE_EXCEPTIONS = @MFEM_USE_EXCEPTIONS@
|
||||
MFEM_USE_ZLIB = @MFEM_USE_ZLIB@
|
||||
@@ -63,6 +65,7 @@ MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
|
||||
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
|
||||
MFEM_USE_BENCHMARK = @MFEM_USE_BENCHMARK@
|
||||
MFEM_USE_PARELAG = @MFEM_USE_PARELAG@
|
||||
MFEM_USE_TRIBOL = @MFEM_USE_TRIBOL@
|
||||
MFEM_USE_ENZYME = @MFEM_USE_ENZYME@
|
||||
|
||||
# Compiler, compile options, and link options
|
||||
|
||||
+16
-2
@@ -22,6 +22,8 @@ endif()
|
||||
option(BUILD_SHARED_LIBS "Enable shared library build of MFEM" OFF)
|
||||
option(MFEM_USE_MPI "Enable MPI parallel build" OFF)
|
||||
option(MFEM_USE_METIS "Enable METIS usage" ${MFEM_USE_MPI})
|
||||
set(MFEM_PRECISION "double" CACHE STRING
|
||||
"Floating-point precision to use: single, or double")
|
||||
option(MFEM_USE_EXCEPTIONS "Enable the use of exceptions" OFF)
|
||||
option(MFEM_USE_ZLIB "Enable zlib for compressed data streams." OFF)
|
||||
option(MFEM_USE_LIBUNWIND "Enable backtrace for errors." OFF)
|
||||
@@ -65,6 +67,7 @@ option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
|
||||
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
|
||||
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
|
||||
option(MFEM_USE_PARELAG "Enable ParELAG" OFF)
|
||||
option(MFEM_USE_TRIBOL "Enable Tribol" OFF)
|
||||
option(MFEM_USE_ENZYME "Enable Enzyme" OFF)
|
||||
|
||||
# Optional overrides for autodetected MPIEXEC and MPIEXEC_NUMPROC_FLAG
|
||||
@@ -210,8 +213,15 @@ set(CONDUIT_DIR "${MFEM_DIR}/../conduit" CACHE PATH
|
||||
|
||||
set(AXOM_DIR "${MFEM_DIR}/../axom" CACHE PATH "Path to the Axom library.")
|
||||
# May need to add "Boost" as requirement.
|
||||
set(Axom_REQUIRED_PACKAGES "Conduit/relay/blueprint" CACHE STRING
|
||||
"Additional packages required by Axom.")
|
||||
if (MFEM_USE_SIDRE)
|
||||
if (MFEM_USE_MPI)
|
||||
set(Axom_REQUIRED_PACKAGES "Conduit/blueprint/blueprint_mpi/relay/relay_mpi" CACHE STRING
|
||||
"Additional packages required by Axom.")
|
||||
elseif()
|
||||
set(Axom_REQUIRED_PACKAGES "Conduit/blueprint/relay" CACHE STRING
|
||||
"Additional packages required by Axom.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
set(PUMI_DIR "${MFEM_DIR}/../pumi-2.1.0" CACHE STRING
|
||||
"Directory where PUMI is installed")
|
||||
@@ -248,6 +258,10 @@ set(PARELAG_INCLUDE_DIRS "${PARELAG_DIR}/src;${PARELAG_DIR}/build/src" CACHE
|
||||
set(PARELAG_LIBRARIES "${PARELAG_DIR}/build/src/libParELAG.a" CACHE STRING
|
||||
"The ParELAG library.")
|
||||
|
||||
set(TRIBOL_DIR "${MFEM_DIR}/../tribol" CACHE PATH "Path to Tribol")
|
||||
set(Tribol_REQUIRED_PACKAGES "Axom/core/mint/slam/slic" CACHE STRING
|
||||
"Additional packages required by Tribol")
|
||||
|
||||
set(BLAS_INCLUDE_DIRS "" CACHE STRING "Path to BLAS headers.")
|
||||
set(BLAS_LIBRARIES "" CACHE STRING "The BLAS library.")
|
||||
set(LAPACK_INCLUDE_DIRS "" CACHE STRING "Path to LAPACK headers.")
|
||||
|
||||
+32
-3
@@ -120,6 +120,7 @@ MFEM_MPI_NP = 4
|
||||
MFEM_USE_MPI = NO
|
||||
MFEM_USE_METIS = $(MFEM_USE_MPI)
|
||||
MFEM_USE_METIS_5 = NO
|
||||
MFEM_PRECISION = double
|
||||
MFEM_DEBUG = NO
|
||||
MFEM_USE_EXCEPTIONS = NO
|
||||
MFEM_USE_ZLIB = NO
|
||||
@@ -166,8 +167,21 @@ MFEM_USE_ADFORWARD = NO
|
||||
MFEM_USE_CODIPACK = NO
|
||||
MFEM_USE_BENCHMARK = NO
|
||||
MFEM_USE_PARELAG = NO
|
||||
MFEM_USE_TRIBOL = NO
|
||||
MFEM_USE_ENZYME = NO
|
||||
|
||||
# Process MFEM_PRECISION -> MFEM_USE_SINGLE, MFEM_USE_DOUBLE
|
||||
ifneq ($(filter double Double DOUBLE,$(MFEM_PRECISION)),)
|
||||
MFEM_USE_DOUBLE = YES
|
||||
MFEM_USE_SINGLE = NO
|
||||
else ifneq ($(filter single Single SINGLE,$(MFEM_PRECISION)),)
|
||||
MFEM_USE_DOUBLE = NO
|
||||
MFEM_USE_SINGLE = YES
|
||||
else ifeq ($(MAKECMDGOALS),config)
|
||||
$(error Invalid floating-point precision: \
|
||||
MFEM_PRECISION = $(MFEM_PRECISION))
|
||||
endif
|
||||
|
||||
# MPI library compile and link flags
|
||||
# These settings are used only when building MFEM with MPI + HIP
|
||||
ifeq ($(MFEM_USE_MPI)$(MFEM_USE_HIP),YESYES)
|
||||
@@ -317,8 +331,13 @@ MPI_FORTRAN_LIB = -lmpifort
|
||||
# MUMPS library configuration
|
||||
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.5.0
|
||||
MUMPS_OPT = -I$(MUMPS_DIR)/include
|
||||
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
|
||||
-lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
|
||||
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib
|
||||
ifeq ($(MFEM_USE_SINGLE),YES)
|
||||
MUMPS_LIB += -lsmumps
|
||||
else
|
||||
MUMPS_LIB += -ldmumps
|
||||
endif
|
||||
MUMPS_LIB += -lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
|
||||
|
||||
# STRUMPACK library configuration
|
||||
STRUMPACK_DIR = @MFEM_DIR@/../STRUMPACK-build
|
||||
@@ -369,7 +388,7 @@ GINKGO_LIB = $(XLINKER)-rpath,$(GINKGO_LINK_LIB_DIR) -L$(GINKGO_LINK_LIB_DIR)\
|
||||
# AmgX library configuration
|
||||
AMGX_DIR = @MFEM_DIR@/../amgx
|
||||
AMGX_OPT = -I$(AMGX_DIR)/include
|
||||
AMGX_LIB = -lcusparse -lcusolver -lcublas -lnvToolsExt -L$(AMGX_DIR)/lib -lamgx
|
||||
AMGX_LIB = -L$(AMGX_DIR)/lib -lamgx -lcusparse -lcusolver -lcublas -lnvToolsExt
|
||||
|
||||
# GnuTLS library configuration
|
||||
GNUTLS_OPT =
|
||||
@@ -570,6 +589,16 @@ PARELAG_DIR = @MFEM_DIR@/../parelag
|
||||
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
|
||||
PARELAG_LIB = -L$(PARELAG_DIR)/build/src -lParELAG
|
||||
|
||||
# Tribol library configuration
|
||||
ifeq ($(MFEM_USE_TRIBOL),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
AXOM_DIR = @MFEM_DIR@/../axom
|
||||
TRIBOL_DIR = @MFEM_DIR@/../tribol
|
||||
TRIBOL_OPT = -I$(TRIBOL_DIR)/include -I$(AXOM_DIR)/include
|
||||
TRIBOL_LIB = -L$(TRIBOL_DIR)/lib -ltribol -lredecomp -L$(AXOM_DIR)/lib -laxom_mint\
|
||||
-laxom_slam -laxom_slic -laxom_core
|
||||
|
||||
# Enzyme configuration
|
||||
|
||||
# If you want to enable automatic differentiation at compile time, use the
|
||||
|
||||
@@ -9,7 +9,11 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
#include "smumps_c.h"
|
||||
#else
|
||||
#include "dmumps_c.h"
|
||||
#endif
|
||||
#include <string>
|
||||
#include <iostream>
|
||||
#include <algorithm>
|
||||
|
||||
+1
-1
@@ -110,4 +110,4 @@ config-mk:
|
||||
|
||||
clean:
|
||||
rm -f $(CONFIG_HPP) $(CONFIG_MK) sample-runs-build.log
|
||||
rm -f $(GHV) $(GHV).out $(GMV) $(GMV).out
|
||||
rm -f $(GHV) $(GHV).out $(GMV) $(GMV).out *.dSYM
|
||||
|
||||
@@ -0,0 +1,118 @@
|
||||
SetFactory("OpenCASCADE");
|
||||
|
||||
order = 1;
|
||||
|
||||
R = 1;
|
||||
r = 0.2;
|
||||
|
||||
Point(1) = {0,0,0};
|
||||
|
||||
Point(2) = {r/Sqrt(2),r/Sqrt(2),0};
|
||||
Point(3) = {-r/Sqrt(2),r/Sqrt(2),0};
|
||||
Point(4) = {-r/Sqrt(2),-r/Sqrt(2),0};
|
||||
Point(5) = {r/Sqrt(2),-r/Sqrt(2),0};
|
||||
|
||||
Point(6) = {R,0,0};
|
||||
Point(7) = {R/Sqrt(2),R/Sqrt(2),0};
|
||||
Point(8) = {0,R,0};
|
||||
Point(9) = {-R/Sqrt(2),R/Sqrt(2),0};
|
||||
Point(10) = {-R,0,0};
|
||||
Point(11) = {-R/Sqrt(2),-R/Sqrt(2),0};
|
||||
Point(12) = {0,-R,0};
|
||||
Point(13) = {R/Sqrt(2),-R/Sqrt(2),0};
|
||||
|
||||
Line(1) = {1,2};
|
||||
Line(2) = {1,3};
|
||||
Line(3) = {1,4};
|
||||
Line(4) = {1,5};
|
||||
|
||||
Line(5) = {1,6};
|
||||
Line(6) = {1,8};
|
||||
Line(7) = {1,10};
|
||||
Line(8) = {1,12};
|
||||
|
||||
Line(9) = {2,6};
|
||||
Line(10) = {2,8};
|
||||
Line(11) = {3,8};
|
||||
Line(12) = {3,10};
|
||||
Line(13) = {4,10};
|
||||
Line(14) = {4,12};
|
||||
Line(15) = {5,12};
|
||||
Line(16) = {5,6};
|
||||
|
||||
Line(17) = {6,7};
|
||||
Line(18) = {7,8};
|
||||
Line(19) = {8,9};
|
||||
Line(20) = {9,10};
|
||||
Line(21) = {10,11};
|
||||
Line(22) = {11,12};
|
||||
Line(23) = {12,13};
|
||||
Line(24) = {13,6};
|
||||
|
||||
Transfinite Curve{1:24} = 2;
|
||||
|
||||
Physical Curve("ENE") = {17};
|
||||
Physical Curve("NNE") = {18};
|
||||
Physical Curve("NNW") = {19};
|
||||
Physical Curve("WNW") = {20};
|
||||
Physical Curve("WSW") = {21};
|
||||
Physical Curve("SSW") = {22};
|
||||
Physical Curve("SSE") = {23};
|
||||
Physical Curve("ESE") = {24};
|
||||
|
||||
Curve Loop(1) = {9,17,18,-10};
|
||||
Curve Loop(2) = {11,19,20,-12};
|
||||
Curve Loop(3) = {13,21,22,-14};
|
||||
Curve Loop(4) = {15,23,24,-16};
|
||||
|
||||
Plane Surface(1) = {1};
|
||||
Plane Surface(2) = {2};
|
||||
Plane Surface(3) = {3};
|
||||
Plane Surface(4) = {4};
|
||||
|
||||
Transfinite Surface{1} = {2,6,7,8};
|
||||
Transfinite Surface{2} = {3,8,9,10};
|
||||
Transfinite Surface{3} = {4,10,11,12};
|
||||
Transfinite Surface{4} = {5,12,13,6};
|
||||
Recombine Surface{1:4};
|
||||
|
||||
Physical Surface("Base") = {1,2,3,4};
|
||||
|
||||
Curve Loop(5) = {1,10,-6};
|
||||
Plane Surface(5) = {5};
|
||||
Physical Surface("N Even") = {5};
|
||||
|
||||
Curve Loop(6) = {6,-11,-2};
|
||||
Plane Surface(6) = {6};
|
||||
Physical Surface("N Odd") = {6};
|
||||
|
||||
Curve Loop(7) = {2,12,-7};
|
||||
Plane Surface(7) = {7};
|
||||
Physical Surface("W Even") = {7};
|
||||
|
||||
Curve Loop(8) = {7,-13,-3};
|
||||
Plane Surface(8) = {8};
|
||||
Physical Surface("W Odd") = {8};
|
||||
|
||||
Curve Loop(9) = {3,14,-8};
|
||||
Plane Surface(9) = {9};
|
||||
Physical Surface("S Even") = {9};
|
||||
|
||||
Curve Loop(10) = {8,-15,-4};
|
||||
Plane Surface(10) = {10};
|
||||
Physical Surface("S Odd") = {10};
|
||||
|
||||
Curve Loop(11) = {4,16,-5};
|
||||
Plane Surface(11) = {11};
|
||||
Physical Surface("E Even") = {11};
|
||||
|
||||
Curve Loop(12) = {5,-9,-1};
|
||||
Plane Surface(12) = {12};
|
||||
Physical Surface("E Odd") = {12};
|
||||
|
||||
// Generate 2D mesh
|
||||
Mesh 2;
|
||||
SetOrder order;
|
||||
Mesh.MshFileVersion = 2.2;
|
||||
|
||||
Save "compass.msh";
|
||||
@@ -0,0 +1,96 @@
|
||||
MFEM mesh v1.3
|
||||
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
#
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
elements
|
||||
12
|
||||
10 2 7 0 1
|
||||
11 2 0 7 2
|
||||
12 2 9 0 2
|
||||
13 2 0 9 3
|
||||
14 2 11 0 3
|
||||
15 2 0 11 4
|
||||
16 2 5 0 4
|
||||
17 2 0 5 1
|
||||
9 3 1 5 6 7
|
||||
9 3 2 7 8 9
|
||||
9 3 3 9 10 11
|
||||
9 3 4 11 12 5
|
||||
|
||||
attribute_sets
|
||||
16
|
||||
"Base" 1 9
|
||||
"E Even" 1 16
|
||||
"E Odd" 1 17
|
||||
"East" 2 16 17
|
||||
"N Even" 1 10
|
||||
"N Odd" 1 11
|
||||
"North" 2 10 11
|
||||
"Rose" 8 10 11 12 13 14 15 16 17
|
||||
"Rose Even" 4 10 12 14 16
|
||||
"Rose Odd" 4 11 13 15 17
|
||||
"S Even" 1 14
|
||||
"S Odd" 1 15
|
||||
"South" 2 14 15
|
||||
"W Even" 1 12
|
||||
"W Odd" 1 13
|
||||
"West" 2 12 13
|
||||
|
||||
boundary
|
||||
8
|
||||
1 1 5 6
|
||||
2 1 6 7
|
||||
3 1 7 8
|
||||
4 1 8 9
|
||||
5 1 9 10
|
||||
6 1 10 11
|
||||
7 1 11 12
|
||||
8 1 12 5
|
||||
|
||||
bdr_attribute_sets
|
||||
13
|
||||
"Boundary" 8 1 2 3 4 5 6 7 8
|
||||
"ENE" 1 1
|
||||
"ESE" 1 8
|
||||
"Eastern Boundary" 2 1 8
|
||||
"NNE" 1 2
|
||||
"NNW" 1 3
|
||||
"Northern Boundary" 2 2 3
|
||||
"SSE" 1 7
|
||||
"SSW" 1 6
|
||||
"Southern Boundary" 2 6 7
|
||||
"WNW" 1 4
|
||||
"WSW" 1 5
|
||||
"Western Boundary" 2 4 5
|
||||
|
||||
vertices
|
||||
13
|
||||
2
|
||||
0 0
|
||||
0.14142136 0.14142136
|
||||
-0.14142136 0.14142136
|
||||
-0.14142136 -0.14142136
|
||||
0.14142136 -0.14142136
|
||||
1 0
|
||||
0.70710678 0.70710678
|
||||
0 1
|
||||
-0.70710678 0.70710678
|
||||
-1 0
|
||||
-0.70710678 -0.70710678
|
||||
0 -1
|
||||
0.70710678 -0.70710678
|
||||
|
||||
mfem_mesh_end
|
||||
@@ -0,0 +1,62 @@
|
||||
$MeshFormat
|
||||
2.2 0 8
|
||||
$EndMeshFormat
|
||||
$PhysicalNames
|
||||
17
|
||||
1 1 "ENE"
|
||||
1 2 "NNE"
|
||||
1 3 "NNW"
|
||||
1 4 "WNW"
|
||||
1 5 "WSW"
|
||||
1 6 "SSW"
|
||||
1 7 "SSE"
|
||||
1 8 "ESE"
|
||||
2 9 "Base"
|
||||
2 10 "N Even"
|
||||
2 11 "N Odd"
|
||||
2 12 "W Even"
|
||||
2 13 "W Odd"
|
||||
2 14 "S Even"
|
||||
2 15 "S Odd"
|
||||
2 16 "E Even"
|
||||
2 17 "E Odd"
|
||||
$EndPhysicalNames
|
||||
$Nodes
|
||||
13
|
||||
1 0 0 0
|
||||
2 0.1414213562373095 0.1414213562373095 0
|
||||
3 -0.1414213562373095 0.1414213562373095 0
|
||||
4 -0.1414213562373095 -0.1414213562373095 0
|
||||
5 0.1414213562373095 -0.1414213562373095 0
|
||||
6 1 0 0
|
||||
7 0.7071067811865475 0.7071067811865475 0
|
||||
8 0 1 0
|
||||
9 -0.7071067811865475 0.7071067811865475 0
|
||||
10 -1 0 0
|
||||
11 -0.7071067811865475 -0.7071067811865475 0
|
||||
12 0 -1 0
|
||||
13 0.7071067811865475 -0.7071067811865475 0
|
||||
$EndNodes
|
||||
$Elements
|
||||
20
|
||||
1 1 2 1 17 6 7
|
||||
2 1 2 2 18 7 8
|
||||
3 1 2 3 19 8 9
|
||||
4 1 2 4 20 9 10
|
||||
5 1 2 5 21 10 11
|
||||
6 1 2 6 22 11 12
|
||||
7 1 2 7 23 12 13
|
||||
8 1 2 8 24 13 6
|
||||
9 2 2 10 5 1 2 8
|
||||
10 2 2 11 6 1 8 3
|
||||
11 2 2 12 7 1 3 10
|
||||
12 2 2 13 8 1 10 4
|
||||
13 2 2 14 9 1 4 12
|
||||
14 2 2 15 10 1 12 5
|
||||
15 2 2 16 11 1 5 6
|
||||
16 2 2 17 12 1 6 2
|
||||
17 3 2 9 1 2 6 7 8
|
||||
18 3 2 9 2 3 8 9 10
|
||||
19 3 2 9 3 4 10 11 12
|
||||
20 3 2 9 4 5 12 13 6
|
||||
$EndElements
|
||||
@@ -48,7 +48,7 @@ PROJECT_NAME = MFEM
|
||||
# could be handy for archiving the generated documentation or if some version
|
||||
# control system is used.
|
||||
|
||||
PROJECT_NUMBER = v4.6.1
|
||||
PROJECT_NUMBER = v4.7.1
|
||||
|
||||
# Using the PROJECT_BRIEF tag one can provide an optional one line description
|
||||
# for a project that appears at the top of each page and should give viewer a
|
||||
@@ -987,6 +987,7 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
|
||||
@MFEM_SOURCE_DIR@/miniapps/solvers \
|
||||
@MFEM_SOURCE_DIR@/miniapps/tools \
|
||||
@MFEM_SOURCE_DIR@/miniapps/toys \
|
||||
@MFEM_SOURCE_DIR@/miniapps/tribol \
|
||||
@MFEM_SOURCE_DIR@/miniapps/spde \
|
||||
@MFEM_SOURCE_DIR@/miniapps/dpg \
|
||||
@MFEM_SOURCE_DIR@/miniapps/dpg/util
|
||||
|
||||
@@ -110,9 +110,13 @@ namespace mfem {
|
||||
* - <a class="el" href="ex35p_8cpp_source.html">Example 35p</a>: parallel multi-domain damped harmonic oscillators
|
||||
* - <a class="el" href="ex36_8cpp_source.html">Example 36</a>: Proximal Galerkin FEM for the obstacle problem
|
||||
* - <a class="el" href="ex36p_8cpp_source.html">Example 36p</a>: parallel Proximal Galerkin FEM for the obstacle problem
|
||||
* - <a class="el" href="ex37_8cpp_source.html">Example 37</a>: Topology optimization
|
||||
* - <a class="el" href="ex37_8cpp_source.html">Example 37</a>: topology optimization
|
||||
* - <a class="el" href="ex37p_8cpp_source.html">Example 37p</a>: parallel topology optimization
|
||||
* - <a class="el" href="ex38_8cpp_source.html">Example 38</a>: cut-surface and cut-volume integration
|
||||
* - <a class="el" href="ex39_8cpp_source.html">Example 39</a>: named mesh attributes
|
||||
* - <a class="el" href="ex39p_8cpp_source.html">Example 39p</a>: parallel named mesh attributes
|
||||
* - <a class="el" href="ex40_8cpp_source.html">Example 40</a>: eikonal equation
|
||||
* - <a class="el" href="ex40p_8cpp_source.html">Example 40p</a>: parallel eikonal equation
|
||||
*
|
||||
* <H4>AmgX Examples</H4>
|
||||
* - Variants of Examples
|
||||
@@ -214,6 +218,8 @@ namespace mfem {
|
||||
* - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
|
||||
* - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Laplace problem
|
||||
* - <a class="el" href="generate__random__field_8cpp_source.html">SPDE Solvers</a>: SPDE solver random field generation
|
||||
* - <a class="el" href="contact-patch-test_8cpp_source.html">Contact</a>: mortar contact patch test for elasticity
|
||||
* - <a class="el" href="multidomain_8cpp_source.html">Multidomain miniapp</a>: Multidomain and Submesh demonstration miniapp
|
||||
* - <a class="el" href="pdiffusion_8cpp_source.html">DPG Diffusion example</a>: DPG formulation for the diffusion problem
|
||||
* - <a class="el" href="pmaxwell_8cpp_source.html">DPG Maxwell example</a>: DPG formulation for the indefinite Maxwell problem
|
||||
* - <a class="el" href="lor__elast_8cpp_source.html">LOR Elasticity</a>: solve linear elasticity with LOR preconditioning on GPUs
|
||||
|
||||
@@ -46,7 +46,7 @@ class DoxygenAwesomeDarkModeToggle extends HTMLElement {
|
||||
DoxygenAwesomeDarkModeToggle.onSystemPreferenceChanged()
|
||||
})
|
||||
// Update the color scheme when the tab is made visible again.
|
||||
// It is possible that the appearance was changed in another tab
|
||||
// It is possible that the appearance was changed in another tab
|
||||
// while this tab was in the background.
|
||||
document.addEventListener("visibilitychange", visibilityState => {
|
||||
if (document.visibilityState === 'visible') {
|
||||
@@ -97,7 +97,7 @@ class DoxygenAwesomeDarkModeToggle extends HTMLElement {
|
||||
* @returns `true` for dark-mode, `false` for light-mode user preference
|
||||
*/
|
||||
static get userPreference() {
|
||||
return (!DoxygenAwesomeDarkModeToggle.systemPreference && localStorage.getItem(DoxygenAwesomeDarkModeToggle.prefersDarkModeInLightModeKey)) ||
|
||||
return (!DoxygenAwesomeDarkModeToggle.systemPreference && localStorage.getItem(DoxygenAwesomeDarkModeToggle.prefersDarkModeInLightModeKey)) ||
|
||||
(DoxygenAwesomeDarkModeToggle.systemPreference && !localStorage.getItem(DoxygenAwesomeDarkModeToggle.prefersLightModeInDarkModeKey))
|
||||
}
|
||||
|
||||
|
||||
+28
-9
@@ -43,13 +43,10 @@ list(APPEND ALL_EXE_SRCS
|
||||
ex34.cpp
|
||||
ex36.cpp
|
||||
ex37.cpp
|
||||
)
|
||||
|
||||
if(MFEM_USE_LAPACK)
|
||||
list(APPEND ALL_EXE_SRCS
|
||||
ex38.cpp
|
||||
ex39.cpp
|
||||
ex40.cpp
|
||||
)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_MPI)
|
||||
list(APPEND ALL_EXE_SRCS
|
||||
@@ -90,7 +87,21 @@ if (MFEM_USE_MPI)
|
||||
ex35p.cpp
|
||||
ex36p.cpp
|
||||
ex37p.cpp
|
||||
)
|
||||
ex39p.cpp
|
||||
ex40p.cpp
|
||||
)
|
||||
endif()
|
||||
|
||||
# Examples that return MFEM_SKIP_RETURN_VALUE in some cases:
|
||||
set(SKIP_TESTS)
|
||||
if (HYPRE_USING_CUDA OR HYPRE_USING_HIP)
|
||||
list(APPEND SKIP_TESTS ex19p.cpp ex28p.cpp)
|
||||
endif()
|
||||
if (MFEM_USE_SINGLE)
|
||||
list(APPEND SKIP_TESTS ex33.cpp ex33p.cpp)
|
||||
endif()
|
||||
if (NOT MFEM_USE_LAPACK)
|
||||
list(APPEND SKIP_TESTS ex38.cpp)
|
||||
endif()
|
||||
|
||||
# Include the source directory where mfem.hpp and mfem-performance.hpp are.
|
||||
@@ -102,6 +113,9 @@ add_mfem_examples(ALL_EXE_SRCS)
|
||||
# Add a test for each example
|
||||
if (MFEM_ENABLE_TESTING)
|
||||
foreach(SRC_FILE ${ALL_EXE_SRCS})
|
||||
if (SRC_FILE IN_LIST SKIP_TESTS)
|
||||
continue()
|
||||
endif()
|
||||
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
|
||||
string(REPLACE ".cpp" "" TEST_NAME ${SRC_FILENAME})
|
||||
|
||||
@@ -134,10 +148,10 @@ if (MFEM_ENABLE_TESTING)
|
||||
# Add CUDA/HIP tests.
|
||||
set(DEVICE_EXAMPLES
|
||||
# serial examples with device support:
|
||||
ex1 ex3 ex4 ex5 ex6 ex9 ex22 ex24 ex25 ex26 ex34
|
||||
ex1 ex3 ex4 ex5 ex6 ex9 ex14 ex22 ex24 ex25 ex26 ex34
|
||||
# parallel examples with device support:
|
||||
ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex22p ex24p ex25p ex26p
|
||||
ex34p ex35p)
|
||||
ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex14p ex22p ex24p ex25p
|
||||
ex26p ex34p ex35p)
|
||||
set(MFEM_TEST_DEVICE)
|
||||
if (MFEM_USE_CUDA)
|
||||
set(MFEM_TEST_DEVICE "cuda")
|
||||
@@ -147,6 +161,11 @@ if (MFEM_ENABLE_TESTING)
|
||||
if (MFEM_TEST_DEVICE)
|
||||
foreach(TEST_NAME ${DEVICE_EXAMPLES})
|
||||
set(THIS_TEST_OPTIONS "-no-vis" "-d" "${MFEM_TEST_DEVICE}")
|
||||
if (${TEST_NAME} MATCHES "ex14p")
|
||||
list(APPEND THIS_TEST_OPTIONS "-rs" "2" "-rp" "0" "-pa")
|
||||
elseif (${TEST_NAME} MATCHES "ex14")
|
||||
list(APPEND THIS_TEST_OPTIONS "-r" "2" "-pa")
|
||||
endif()
|
||||
if (NOT (${TEST_NAME} MATCHES ".*p$"))
|
||||
add_test(NAME ${TEST_NAME}_${MFEM_TEST_DEVICE}_ser
|
||||
COMMAND ${TEST_NAME} ${THIS_TEST_OPTIONS})
|
||||
|
||||
+41
-31
@@ -62,7 +62,7 @@ protected:
|
||||
|
||||
BilinearForm M, S;
|
||||
NonlinearForm H;
|
||||
double viscosity;
|
||||
real_t viscosity;
|
||||
HyperelasticModel *model;
|
||||
|
||||
CGSolver M_solver; // Krylov solver for inverting the mass matrix M
|
||||
@@ -84,16 +84,16 @@ protected:
|
||||
|
||||
public:
|
||||
HyperelasticOperator(FiniteElementSpace &f, Array<int> &ess_bdr,
|
||||
double visc, double mu, double K);
|
||||
real_t visc, real_t mu, real_t K);
|
||||
|
||||
/// Compute the right-hand side of the ODE system.
|
||||
virtual void Mult(const Vector &vx, Vector &dvx_dt) const;
|
||||
/** Solve the Backward-Euler equation: k = f(x + dt*k, t), for the unknown k.
|
||||
This is the only requirement for high-order SDIRK implicit integration.*/
|
||||
virtual void ImplicitSolve(const double dt, const Vector &x, Vector &k);
|
||||
virtual void ImplicitSolve(const real_t dt, const Vector &x, Vector &k);
|
||||
|
||||
double ElasticEnergy(const Vector &x) const;
|
||||
double KineticEnergy(const Vector &v) const;
|
||||
real_t ElasticEnergy(const Vector &x) const;
|
||||
real_t KineticEnergy(const Vector &v) const;
|
||||
void GetElasticEnergyDensity(const GridFunction &x, GridFunction &w) const;
|
||||
|
||||
virtual ~HyperelasticOperator();
|
||||
@@ -109,7 +109,7 @@ private:
|
||||
BilinearForm *M, *S;
|
||||
NonlinearForm *H;
|
||||
mutable SparseMatrix *Jacobian;
|
||||
double dt;
|
||||
real_t dt;
|
||||
const Vector *v, *x;
|
||||
mutable Vector w, z;
|
||||
|
||||
@@ -117,7 +117,7 @@ public:
|
||||
ReducedSystemOperator(BilinearForm *M_, BilinearForm *S_, NonlinearForm *H_);
|
||||
|
||||
/// Set current dt, v, x values - needed to compute action and Jacobian.
|
||||
void SetParameters(double dt_, const Vector *v_, const Vector *x_);
|
||||
void SetParameters(real_t dt_, const Vector *v_, const Vector *x_);
|
||||
|
||||
/// Compute y = H(x + dt (v + dt k)) + M k + S (v + dt k).
|
||||
virtual void Mult(const Vector &k, Vector &y) const;
|
||||
@@ -141,7 +141,7 @@ private:
|
||||
public:
|
||||
ElasticEnergyCoefficient(HyperelasticModel &m, const GridFunction &x_)
|
||||
: model(m), x(x_) { }
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
virtual real_t Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
virtual ~ElasticEnergyCoefficient() { }
|
||||
};
|
||||
|
||||
@@ -161,11 +161,11 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 2;
|
||||
int order = 2;
|
||||
int ode_solver_type = 3;
|
||||
double t_final = 300.0;
|
||||
double dt = 3.0;
|
||||
double visc = 1e-2;
|
||||
double mu = 0.25;
|
||||
double K = 5.0;
|
||||
real_t t_final = 300.0;
|
||||
real_t dt = 3.0;
|
||||
real_t visc = 1e-2;
|
||||
real_t mu = 0.25;
|
||||
real_t K = 5.0;
|
||||
bool visualization = true;
|
||||
int vis_steps = 1;
|
||||
|
||||
@@ -309,13 +309,13 @@ int main(int argc, char *argv[])
|
||||
<< " Press space (in the GLVis window) to resume it.\n";
|
||||
}
|
||||
|
||||
double ee0 = oper.ElasticEnergy(x.GetTrueVector());
|
||||
double ke0 = oper.KineticEnergy(v.GetTrueVector());
|
||||
real_t ee0 = oper.ElasticEnergy(x.GetTrueVector());
|
||||
real_t ke0 = oper.KineticEnergy(v.GetTrueVector());
|
||||
cout << "initial elastic energy (EE) = " << ee0 << endl;
|
||||
cout << "initial kinetic energy (KE) = " << ke0 << endl;
|
||||
cout << "initial total energy (TE) = " << (ee0 + ke0) << endl;
|
||||
|
||||
double t = 0.0;
|
||||
real_t t = 0.0;
|
||||
oper.SetTime(t);
|
||||
ode_solver->Init(oper);
|
||||
|
||||
@@ -324,7 +324,7 @@ int main(int argc, char *argv[])
|
||||
bool last_step = false;
|
||||
for (int ti = 1; !last_step; ti++)
|
||||
{
|
||||
double dt_real = min(dt, t_final - t);
|
||||
real_t dt_real = min(dt, t_final - t);
|
||||
|
||||
ode_solver->Step(vx, t, dt_real);
|
||||
|
||||
@@ -332,8 +332,8 @@ int main(int argc, char *argv[])
|
||||
|
||||
if (last_step || (ti % vis_steps) == 0)
|
||||
{
|
||||
double ee = oper.ElasticEnergy(x.GetTrueVector());
|
||||
double ke = oper.KineticEnergy(v.GetTrueVector());
|
||||
real_t ee = oper.ElasticEnergy(x.GetTrueVector());
|
||||
real_t ke = oper.KineticEnergy(v.GetTrueVector());
|
||||
|
||||
cout << "step " << ti << ", t = " << t << ", EE = " << ee << ", KE = "
|
||||
<< ke << ", ΔTE = " << (ee+ke)-(ee0+ke0) << endl;
|
||||
@@ -419,7 +419,7 @@ ReducedSystemOperator::ReducedSystemOperator(
|
||||
dt(0.0), v(NULL), x(NULL), w(height), z(height)
|
||||
{ }
|
||||
|
||||
void ReducedSystemOperator::SetParameters(double dt_, const Vector *v_,
|
||||
void ReducedSystemOperator::SetParameters(real_t dt_, const Vector *v_,
|
||||
const Vector *x_)
|
||||
{
|
||||
dt = dt_; v = v_; x = x_;
|
||||
@@ -453,16 +453,26 @@ ReducedSystemOperator::~ReducedSystemOperator()
|
||||
|
||||
|
||||
HyperelasticOperator::HyperelasticOperator(FiniteElementSpace &f,
|
||||
Array<int> &ess_bdr, double visc,
|
||||
double mu, double K)
|
||||
: TimeDependentOperator(2*f.GetTrueVSize(), 0.0), fespace(f),
|
||||
Array<int> &ess_bdr, real_t visc,
|
||||
real_t mu, real_t K)
|
||||
: TimeDependentOperator(2*f.GetTrueVSize(), (real_t) 0.0), fespace(f),
|
||||
M(&fespace), S(&fespace), H(&fespace),
|
||||
viscosity(visc), z(height/2)
|
||||
{
|
||||
const double rel_tol = 1e-8;
|
||||
#if defined(MFEM_USE_DOUBLE)
|
||||
const real_t rel_tol = 1e-8;
|
||||
const real_t newton_abs_tol = 0.0;
|
||||
#elif defined(MFEM_USE_SINGLE)
|
||||
const real_t rel_tol = 1e-3;
|
||||
const real_t newton_abs_tol = 1e-4;
|
||||
#else
|
||||
#error "Only single and double precision are supported!"
|
||||
const real_t rel_tol = real_t(1);
|
||||
const real_t newton_abs_tol = real_t(0);
|
||||
#endif
|
||||
const int skip_zero_entries = 0;
|
||||
|
||||
const double ref_density = 1.0; // density in the reference configuration
|
||||
const real_t ref_density = 1.0; // density in the reference configuration
|
||||
ConstantCoefficient rho0(ref_density);
|
||||
M.AddDomainIntegrator(new VectorMassIntegrator(rho0));
|
||||
M.Assemble(skip_zero_entries);
|
||||
@@ -509,7 +519,7 @@ HyperelasticOperator::HyperelasticOperator(FiniteElementSpace &f,
|
||||
newton_solver.SetOperator(*reduced_oper);
|
||||
newton_solver.SetPrintLevel(1); // print Newton iterations
|
||||
newton_solver.SetRelTol(rel_tol);
|
||||
newton_solver.SetAbsTol(0.0);
|
||||
newton_solver.SetAbsTol(newton_abs_tol);
|
||||
newton_solver.SetMaxIter(10);
|
||||
}
|
||||
|
||||
@@ -533,7 +543,7 @@ void HyperelasticOperator::Mult(const Vector &vx, Vector &dvx_dt) const
|
||||
dx_dt = v;
|
||||
}
|
||||
|
||||
void HyperelasticOperator::ImplicitSolve(const double dt,
|
||||
void HyperelasticOperator::ImplicitSolve(const real_t dt,
|
||||
const Vector &vx, Vector &dvx_dt)
|
||||
{
|
||||
int sc = height/2;
|
||||
@@ -555,12 +565,12 @@ void HyperelasticOperator::ImplicitSolve(const double dt,
|
||||
add(v, dt, dv_dt, dx_dt);
|
||||
}
|
||||
|
||||
double HyperelasticOperator::ElasticEnergy(const Vector &x) const
|
||||
real_t HyperelasticOperator::ElasticEnergy(const Vector &x) const
|
||||
{
|
||||
return H.GetEnergy(x);
|
||||
}
|
||||
|
||||
double HyperelasticOperator::KineticEnergy(const Vector &v) const
|
||||
real_t HyperelasticOperator::KineticEnergy(const Vector &v) const
|
||||
{
|
||||
return 0.5*M.InnerProduct(v, v);
|
||||
}
|
||||
@@ -581,7 +591,7 @@ HyperelasticOperator::~HyperelasticOperator()
|
||||
}
|
||||
|
||||
|
||||
double ElasticEnergyCoefficient::Eval(ElementTransformation &T,
|
||||
real_t ElasticEnergyCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
model.SetTransformation(T);
|
||||
@@ -601,7 +611,7 @@ void InitialDeformation(const Vector &x, Vector &y)
|
||||
void InitialVelocity(const Vector &x, Vector &v)
|
||||
{
|
||||
const int dim = x.Size();
|
||||
const double s = 0.1/64.;
|
||||
const real_t s = 0.1/64.;
|
||||
|
||||
v = 0.0;
|
||||
v(dim-1) = s*x(0)*x(0)*(8.0-x(0));
|
||||
|
||||
+42
-35
@@ -63,7 +63,7 @@ protected:
|
||||
|
||||
ParBilinearForm M, S;
|
||||
ParNonlinearForm H;
|
||||
double viscosity;
|
||||
real_t viscosity;
|
||||
HyperelasticModel *model;
|
||||
|
||||
HypreParMatrix *Mmat; // Mass matrix from ParallelAssemble()
|
||||
@@ -86,16 +86,16 @@ protected:
|
||||
|
||||
public:
|
||||
HyperelasticOperator(ParFiniteElementSpace &f, Array<int> &ess_bdr,
|
||||
double visc, double mu, double K);
|
||||
real_t visc, real_t mu, real_t K);
|
||||
|
||||
/// Compute the right-hand side of the ODE system.
|
||||
virtual void Mult(const Vector &vx, Vector &dvx_dt) const;
|
||||
/** Solve the Backward-Euler equation: k = f(x + dt*k, t), for the unknown k.
|
||||
This is the only requirement for high-order SDIRK implicit integration.*/
|
||||
virtual void ImplicitSolve(const double dt, const Vector &x, Vector &k);
|
||||
virtual void ImplicitSolve(const real_t dt, const Vector &x, Vector &k);
|
||||
|
||||
double ElasticEnergy(const ParGridFunction &x) const;
|
||||
double KineticEnergy(const ParGridFunction &v) const;
|
||||
real_t ElasticEnergy(const ParGridFunction &x) const;
|
||||
real_t KineticEnergy(const ParGridFunction &v) const;
|
||||
void GetElasticEnergyDensity(const ParGridFunction &x,
|
||||
ParGridFunction &w) const;
|
||||
|
||||
@@ -112,7 +112,7 @@ private:
|
||||
ParBilinearForm *M, *S;
|
||||
ParNonlinearForm *H;
|
||||
mutable HypreParMatrix *Jacobian;
|
||||
double dt;
|
||||
real_t dt;
|
||||
const Vector *v, *x;
|
||||
mutable Vector w, z;
|
||||
const Array<int> &ess_tdof_list;
|
||||
@@ -122,7 +122,7 @@ public:
|
||||
ParNonlinearForm *H_, const Array<int> &ess_tdof_list);
|
||||
|
||||
/// Set current dt, v, x values - needed to compute action and Jacobian.
|
||||
void SetParameters(double dt_, const Vector *v_, const Vector *x_);
|
||||
void SetParameters(real_t dt_, const Vector *v_, const Vector *x_);
|
||||
|
||||
/// Compute y = H(x + dt (v + dt k)) + M k + S (v + dt k).
|
||||
virtual void Mult(const Vector &k, Vector &y) const;
|
||||
@@ -146,7 +146,7 @@ private:
|
||||
public:
|
||||
ElasticEnergyCoefficient(HyperelasticModel &m, const ParGridFunction &x_)
|
||||
: model(m), x(x_) { }
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
virtual real_t Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
virtual ~ElasticEnergyCoefficient() { }
|
||||
};
|
||||
|
||||
@@ -173,11 +173,11 @@ int main(int argc, char *argv[])
|
||||
int par_ref_levels = 0;
|
||||
int order = 2;
|
||||
int ode_solver_type = 3;
|
||||
double t_final = 300.0;
|
||||
double dt = 3.0;
|
||||
double visc = 1e-2;
|
||||
double mu = 0.25;
|
||||
double K = 5.0;
|
||||
real_t t_final = 300.0;
|
||||
real_t dt = 3.0;
|
||||
real_t visc = 1e-2;
|
||||
real_t mu = 0.25;
|
||||
real_t K = 5.0;
|
||||
bool adaptive_lin_rtol = true;
|
||||
bool visualization = true;
|
||||
int vis_steps = 1;
|
||||
@@ -358,8 +358,8 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
double ee0 = oper.ElasticEnergy(x_gf);
|
||||
double ke0 = oper.KineticEnergy(v_gf);
|
||||
real_t ee0 = oper.ElasticEnergy(x_gf);
|
||||
real_t ke0 = oper.KineticEnergy(v_gf);
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "initial elastic energy (EE) = " << ee0 << endl;
|
||||
@@ -367,7 +367,7 @@ int main(int argc, char *argv[])
|
||||
cout << "initial total energy (TE) = " << (ee0 + ke0) << endl;
|
||||
}
|
||||
|
||||
double t = 0.0;
|
||||
real_t t = 0.0;
|
||||
oper.SetTime(t);
|
||||
ode_solver->Init(oper);
|
||||
|
||||
@@ -376,7 +376,7 @@ int main(int argc, char *argv[])
|
||||
bool last_step = false;
|
||||
for (int ti = 1; !last_step; ti++)
|
||||
{
|
||||
double dt_real = min(dt, t_final - t);
|
||||
real_t dt_real = min(dt, t_final - t);
|
||||
|
||||
ode_solver->Step(vx, t, dt_real);
|
||||
|
||||
@@ -386,8 +386,8 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
v_gf.SetFromTrueVector(); x_gf.SetFromTrueVector();
|
||||
|
||||
double ee = oper.ElasticEnergy(x_gf);
|
||||
double ke = oper.KineticEnergy(v_gf);
|
||||
real_t ee = oper.ElasticEnergy(x_gf);
|
||||
real_t ke = oper.KineticEnergy(v_gf);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
@@ -485,7 +485,7 @@ ReducedSystemOperator::ReducedSystemOperator(
|
||||
ess_tdof_list(ess_tdof_list_)
|
||||
{ }
|
||||
|
||||
void ReducedSystemOperator::SetParameters(double dt_, const Vector *v_,
|
||||
void ReducedSystemOperator::SetParameters(real_t dt_, const Vector *v_,
|
||||
const Vector *x_)
|
||||
{
|
||||
dt = dt_; v = v_; x = x_;
|
||||
@@ -523,17 +523,27 @@ ReducedSystemOperator::~ReducedSystemOperator()
|
||||
|
||||
|
||||
HyperelasticOperator::HyperelasticOperator(ParFiniteElementSpace &f,
|
||||
Array<int> &ess_bdr, double visc,
|
||||
double mu, double K)
|
||||
: TimeDependentOperator(2*f.TrueVSize(), 0.0), fespace(f),
|
||||
Array<int> &ess_bdr, real_t visc,
|
||||
real_t mu, real_t K)
|
||||
: TimeDependentOperator(2*f.TrueVSize(), (real_t) 0.0), fespace(f),
|
||||
M(&fespace), S(&fespace), H(&fespace),
|
||||
viscosity(visc), M_solver(f.GetComm()), newton_solver(f.GetComm()),
|
||||
z(height/2)
|
||||
{
|
||||
const double rel_tol = 1e-8;
|
||||
#if defined(MFEM_USE_DOUBLE)
|
||||
const real_t rel_tol = 1e-8;
|
||||
const real_t newton_abs_tol = 0.0;
|
||||
#elif defined(MFEM_USE_SINGLE)
|
||||
const real_t rel_tol = 1e-3;
|
||||
const real_t newton_abs_tol = 1e-4;
|
||||
#else
|
||||
#error "Only single and double precision are supported!"
|
||||
const real_t rel_tol = real_t(1);
|
||||
const real_t newton_abs_tol = real_t(0);
|
||||
#endif
|
||||
const int skip_zero_entries = 0;
|
||||
|
||||
const double ref_density = 1.0; // density in the reference configuration
|
||||
const real_t ref_density = 1.0; // density in the reference configuration
|
||||
ConstantCoefficient rho0(ref_density);
|
||||
M.AddDomainIntegrator(new VectorMassIntegrator(rho0));
|
||||
M.Assemble(skip_zero_entries);
|
||||
@@ -581,7 +591,7 @@ HyperelasticOperator::HyperelasticOperator(ParFiniteElementSpace &f,
|
||||
newton_solver.SetOperator(*reduced_oper);
|
||||
newton_solver.SetPrintLevel(1); // print Newton iterations
|
||||
newton_solver.SetRelTol(rel_tol);
|
||||
newton_solver.SetAbsTol(0.0);
|
||||
newton_solver.SetAbsTol(newton_abs_tol);
|
||||
newton_solver.SetAdaptiveLinRtol(2, 0.5, 0.9);
|
||||
newton_solver.SetMaxIter(10);
|
||||
}
|
||||
@@ -607,7 +617,7 @@ void HyperelasticOperator::Mult(const Vector &vx, Vector &dvx_dt) const
|
||||
dx_dt = v;
|
||||
}
|
||||
|
||||
void HyperelasticOperator::ImplicitSolve(const double dt,
|
||||
void HyperelasticOperator::ImplicitSolve(const real_t dt,
|
||||
const Vector &vx, Vector &dvx_dt)
|
||||
{
|
||||
int sc = height/2;
|
||||
@@ -629,17 +639,14 @@ void HyperelasticOperator::ImplicitSolve(const double dt,
|
||||
add(v, dt, dv_dt, dx_dt);
|
||||
}
|
||||
|
||||
double HyperelasticOperator::ElasticEnergy(const ParGridFunction &x) const
|
||||
real_t HyperelasticOperator::ElasticEnergy(const ParGridFunction &x) const
|
||||
{
|
||||
return H.GetEnergy(x);
|
||||
}
|
||||
|
||||
double HyperelasticOperator::KineticEnergy(const ParGridFunction &v) const
|
||||
real_t HyperelasticOperator::KineticEnergy(const ParGridFunction &v) const
|
||||
{
|
||||
double loc_energy = 0.5*M.InnerProduct(v, v);
|
||||
double energy;
|
||||
MPI_Allreduce(&loc_energy, &energy, 1, MPI_DOUBLE, MPI_SUM,
|
||||
fespace.GetComm());
|
||||
real_t energy = 0.5*M.ParInnerProduct(v, v);
|
||||
return energy;
|
||||
}
|
||||
|
||||
@@ -660,7 +667,7 @@ HyperelasticOperator::~HyperelasticOperator()
|
||||
}
|
||||
|
||||
|
||||
double ElasticEnergyCoefficient::Eval(ElementTransformation &T,
|
||||
real_t ElasticEnergyCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
model.SetTransformation(T);
|
||||
@@ -680,7 +687,7 @@ void InitialDeformation(const Vector &x, Vector &y)
|
||||
void InitialVelocity(const Vector &x, Vector &v)
|
||||
{
|
||||
const int dim = x.Size();
|
||||
const double s = 0.1/64.;
|
||||
const real_t s = 0.1/64.;
|
||||
|
||||
v = 0.0;
|
||||
v(dim-1) = s*x(0)*x(0)*(8.0-x(0));
|
||||
|
||||
+2
-2
@@ -211,7 +211,7 @@ int main(int argc, char *argv[])
|
||||
m->AddDomainIntegrator(new MassIntegrator(one));
|
||||
m->Assemble();
|
||||
// shift the eigenvalue corresponding to eliminated dofs to a large value
|
||||
m->EliminateEssentialBCDiag(ess_bdr, numeric_limits<double>::min());
|
||||
m->EliminateEssentialBCDiag(ess_bdr, numeric_limits<real_t>::min());
|
||||
m->Finalize();
|
||||
|
||||
HypreParMatrix *A = a->ParallelAssemble();
|
||||
@@ -300,7 +300,7 @@ int main(int argc, char *argv[])
|
||||
// 9. Compute the eigenmodes and extract the array of eigenvalues. Define a
|
||||
// parallel grid function to represent each of the eigenmodes returned by
|
||||
// the solver.
|
||||
Array<double> eigenvalues;
|
||||
Array<real_t> eigenvalues;
|
||||
lobpcg->Solve();
|
||||
lobpcg->GetEigenvalues(eigenvalues);
|
||||
ParGridFunction x(fespace);
|
||||
|
||||
+2
-2
@@ -206,7 +206,7 @@ int main(int argc, char *argv[])
|
||||
m->AddDomainIntegrator(new VectorMassIntegrator());
|
||||
m->Assemble();
|
||||
// shift the eigenvalue corresponding to eliminated dofs to a large value
|
||||
m->EliminateEssentialBCDiag(ess_bdr, numeric_limits<double>::min());
|
||||
m->EliminateEssentialBCDiag(ess_bdr, numeric_limits<real_t>::min());
|
||||
m->Finalize();
|
||||
if (myid == 0)
|
||||
{
|
||||
@@ -247,7 +247,7 @@ int main(int argc, char *argv[])
|
||||
// 10. Compute the eigenmodes and extract the array of eigenvalues. Define a
|
||||
// parallel grid function to represent each of the eigenmodes returned by
|
||||
// the solver.
|
||||
Array<double> eigenvalues;
|
||||
Array<real_t> eigenvalues;
|
||||
lobpcg->Solve();
|
||||
lobpcg->GetEigenvalues(eigenvalues);
|
||||
ParGridFunction x(fespace);
|
||||
|
||||
+2
-2
@@ -170,7 +170,7 @@ int main(int argc, char *argv[])
|
||||
m->AddDomainIntegrator(new VectorFEMassIntegrator(one));
|
||||
m->Assemble();
|
||||
// shift the eigenvalue corresponding to eliminated dofs to a large value
|
||||
m->EliminateEssentialBCDiag(ess_bdr, numeric_limits<double>::min());
|
||||
m->EliminateEssentialBCDiag(ess_bdr, numeric_limits<real_t>::min());
|
||||
m->Finalize();
|
||||
|
||||
HypreParMatrix *A = a->ParallelAssemble();
|
||||
@@ -198,7 +198,7 @@ int main(int argc, char *argv[])
|
||||
// 10. Compute the eigenmodes and extract the array of eigenvalues. Define a
|
||||
// parallel grid function to represent each of the eigenmodes returned by
|
||||
// the solver.
|
||||
Array<double> eigenvalues;
|
||||
Array<real_t> eigenvalues;
|
||||
ame->Solve();
|
||||
ame->GetEigenvalues(eigenvalues);
|
||||
ParGridFunction x(fespace);
|
||||
|
||||
+81
-57
@@ -18,6 +18,12 @@
|
||||
// ex14 -m ../data/amr-quad.mesh -r 3
|
||||
// ex14 -m ../data/amr-hex.mesh
|
||||
// ex14 -m ../data/fichera-amr.mesh
|
||||
// ex14 -pa -r 1 -o 3
|
||||
// ex14 -pa -r 1 -o 3 -m ../data/fichera.mesh
|
||||
//
|
||||
// Device sample runs:
|
||||
// ex14 -pa -r 2 -d cuda -o 3
|
||||
// ex14 -pa -r 2 -d cuda -o 3 -m ../data/fichera.mesh
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define a
|
||||
// discontinuous Galerkin (DG) finite element discretization of
|
||||
@@ -43,10 +49,12 @@ int main(int argc, char *argv[])
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int ref_levels = -1;
|
||||
int order = 1;
|
||||
double sigma = -1.0;
|
||||
double kappa = -1.0;
|
||||
double eta = 0.0;
|
||||
real_t sigma = -1.0;
|
||||
real_t kappa = -1.0;
|
||||
real_t eta = 0.0;
|
||||
bool pa = false;
|
||||
bool visualization = 1;
|
||||
const char *device_config = "cpu";
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -62,9 +70,13 @@ int main(int argc, char *argv[])
|
||||
"One of the three DG penalty parameters, should be positive."
|
||||
" Negative values are replaced with (order+1)^2.");
|
||||
args.AddOption(&eta, "-e", "--eta", "BR2 penalty parameter.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
@@ -77,117 +89,129 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// 2. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 3. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral and hexahedral meshes with the same code.
|
||||
// NURBS meshes are projected to second order meshes.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
Mesh mesh(mesh_file);
|
||||
const int dim = mesh.Dimension();
|
||||
|
||||
// 3. Refine the mesh to increase the resolution. In this example we do
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement. By default, or if ref_levels < 0,
|
||||
// we choose it to be the largest number that gives a final mesh with no
|
||||
// more than 50,000 elements.
|
||||
{
|
||||
if (ref_levels < 0)
|
||||
{
|
||||
ref_levels = (int)floor(log(50000./mesh->GetNE())/log(2.)/dim);
|
||||
ref_levels = (int)floor(log(50000./mesh.GetNE())/log(2.)/dim);
|
||||
}
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
}
|
||||
if (mesh->NURBSext)
|
||||
if (mesh.NURBSext)
|
||||
{
|
||||
mesh->SetCurvature(max(order, 1));
|
||||
mesh.SetCurvature(max(order, 1));
|
||||
}
|
||||
|
||||
// 4. Define a finite element space on the mesh. Here we use discontinuous
|
||||
// 5. Define a finite element space on the mesh. Here we use discontinuous
|
||||
// finite elements of the specified order >= 0.
|
||||
FiniteElementCollection *fec = new DG_FECollection(order, dim);
|
||||
FiniteElementSpace *fespace = new FiniteElementSpace(mesh, fec);
|
||||
cout << "Number of unknowns: " << fespace->GetVSize() << endl;
|
||||
const auto bt = pa ? BasisType::GaussLobatto : BasisType::GaussLegendre;
|
||||
DG_FECollection fec(order, dim, bt);
|
||||
FiniteElementSpace fespace(&mesh, &fec);
|
||||
cout << "Number of unknowns: " << fespace.GetVSize() << endl;
|
||||
|
||||
// 5. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// 6. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// the FEM linear system.
|
||||
LinearForm *b = new LinearForm(fespace);
|
||||
LinearForm b(&fespace);
|
||||
ConstantCoefficient one(1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
b->AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b->AddBdrFaceIntegrator(
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b.AddBdrFaceIntegrator(
|
||||
new DGDirichletLFIntegrator(zero, one, sigma, kappa));
|
||||
b->Assemble();
|
||||
b.Assemble();
|
||||
|
||||
// 6. Define the solution vector x as a finite element grid function
|
||||
// 7. Define the solution vector x as a finite element grid function
|
||||
// corresponding to fespace. Initialize x with initial guess of zero.
|
||||
GridFunction x(fespace);
|
||||
GridFunction x(&fespace);
|
||||
x = 0.0;
|
||||
|
||||
// 7. Set up the bilinear form a(.,.) on the finite element space
|
||||
// 8. Set up the bilinear form a(.,.) on the finite element space
|
||||
// corresponding to the Laplacian operator -Delta, by adding the Diffusion
|
||||
// domain integrator and the interior and boundary DG face integrators.
|
||||
// Note that boundary conditions are imposed weakly in the form, so there
|
||||
// is no need for dof elimination. After assembly and finalizing we
|
||||
// extract the corresponding sparse matrix A.
|
||||
BilinearForm *a = new BilinearForm(fespace);
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
a->AddInteriorFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
a->AddBdrFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
BilinearForm a(&fespace);
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
a.AddInteriorFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
a.AddBdrFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
if (eta > 0)
|
||||
{
|
||||
a->AddInteriorFaceIntegrator(new DGDiffusionBR2Integrator(*fespace, eta));
|
||||
a->AddBdrFaceIntegrator(new DGDiffusionBR2Integrator(*fespace, eta));
|
||||
MFEM_VERIFY(!pa, "BR2 not yet compatible with partial assembly.");
|
||||
a.AddInteriorFaceIntegrator(new DGDiffusionBR2Integrator(fespace, eta));
|
||||
a.AddBdrFaceIntegrator(new DGDiffusionBR2Integrator(fespace, eta));
|
||||
}
|
||||
a->Assemble();
|
||||
a->Finalize();
|
||||
const SparseMatrix &A = a->SpMat();
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a.Assemble();
|
||||
a.Finalize();
|
||||
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
// 8. Define a simple symmetric Gauss-Seidel preconditioner and use it to
|
||||
// 9. Define a simple symmetric Gauss-Seidel preconditioner and use it to
|
||||
// solve the system Ax=b with PCG in the symmetric case, and GMRES in the
|
||||
// non-symmetric one.
|
||||
GSSmoother M(A);
|
||||
if (sigma == -1.0)
|
||||
// non-symmetric one. (Note that tolerances are squared: 1e-12 corresponds
|
||||
// to a relative tolerance of 1e-6).
|
||||
//
|
||||
// If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
|
||||
if (pa)
|
||||
{
|
||||
PCG(A, M, *b, x, 1, 500, 1e-12, 0.0);
|
||||
MFEM_VERIFY(sigma == -1.0,
|
||||
"The case of PA with sigma != -1 is not yet supported.");
|
||||
CG(a, b, x, 1, 500, 1e-12, 0.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
GMRES(A, M, *b, x, 1, 500, 10, 1e-12, 0.0);
|
||||
}
|
||||
const SparseMatrix &A = a.SpMat();
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
GSSmoother M(A);
|
||||
if (sigma == -1.0)
|
||||
{
|
||||
PCG(A, M, b, x, 1, 500, 1e-12, 0.0);
|
||||
}
|
||||
else
|
||||
{
|
||||
GMRES(A, M, b, x, 1, 500, 10, 1e-12, 0.0);
|
||||
}
|
||||
#else
|
||||
// 8. If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
|
||||
UMFPackSolver umf_solver;
|
||||
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
umf_solver.SetOperator(A);
|
||||
umf_solver.Mult(*b, x);
|
||||
UMFPackSolver umf_solver;
|
||||
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
umf_solver.SetOperator(A);
|
||||
umf_solver.Mult(b, x);
|
||||
#endif
|
||||
}
|
||||
|
||||
// 9. Save the refined mesh and the solution. This output can be viewed later
|
||||
// using GLVis: "glvis -m refined.mesh -g sol.gf".
|
||||
// 10. Save the refined mesh and the solution. This output can be viewed
|
||||
// later using GLVis: "glvis -m refined.mesh -g sol.gf".
|
||||
ofstream mesh_ofs("refined.mesh");
|
||||
mesh_ofs.precision(8);
|
||||
mesh->Print(mesh_ofs);
|
||||
mesh.Print(mesh_ofs);
|
||||
ofstream sol_ofs("sol.gf");
|
||||
sol_ofs.precision(8);
|
||||
x.Save(sol_ofs);
|
||||
|
||||
// 10. Send the solution by socket to a GLVis server.
|
||||
// 11. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << *mesh << x << flush;
|
||||
sol_sock << "solution\n" << mesh << x << flush;
|
||||
}
|
||||
|
||||
// 11. Free the used memory.
|
||||
delete a;
|
||||
delete b;
|
||||
delete fespace;
|
||||
delete fec;
|
||||
delete mesh;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
+94
-86
@@ -17,6 +17,12 @@
|
||||
// mpirun -np 4 ex14p -m ../data/inline-segment.mesh -rs 5
|
||||
// mpirun -np 4 ex14p -m ../data/amr-quad.mesh -rs 3
|
||||
// mpirun -np 4 ex14p -m ../data/amr-hex.mesh
|
||||
// mpirun -np 4 ex14p -pa -rs 1 -rp 0 -o 3
|
||||
// mpirun -np 4 ex14p -pa -rs 1 -rp 0 -m ../data/fichera.mesh -o 3
|
||||
//
|
||||
// Device sample runs:
|
||||
// mpirun -np 4 ex14p -pa -rs 2 -rp 0 -d cuda -o 3
|
||||
// mpirun -np 4 ex14p -pa -rs 2 -rp 0 -d cuda -m ../data/fichera.mesh -o 3
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define a
|
||||
// discontinuous Galerkin (DG) finite element discretization of
|
||||
@@ -38,42 +44,39 @@ using namespace mfem;
|
||||
|
||||
class CustomSolverMonitor : public IterativeSolverMonitor
|
||||
{
|
||||
private:
|
||||
const ParMesh &pmesh;
|
||||
ParGridFunction &pgf;
|
||||
public:
|
||||
CustomSolverMonitor(const ParMesh *m,
|
||||
ParGridFunction *f) :
|
||||
pmesh(m),
|
||||
pgf(f) {}
|
||||
CustomSolverMonitor(const ParMesh &pmesh_,
|
||||
ParGridFunction &pgf_) :
|
||||
pmesh(pmesh_),
|
||||
pgf(pgf_) {}
|
||||
|
||||
void MonitorSolution(int i, double norm, const Vector &x, bool final)
|
||||
void MonitorSolution(int i, real_t norm, const Vector &x, bool final)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
int num_procs, myid;
|
||||
|
||||
MPI_Comm_size(pmesh->GetComm(),&num_procs);
|
||||
MPI_Comm_rank(pmesh->GetComm(),&myid);
|
||||
MPI_Comm_size(pmesh.GetComm(), &num_procs);
|
||||
MPI_Comm_rank(pmesh.GetComm(), &myid);
|
||||
|
||||
pgf->SetFromTrueDofs(x);
|
||||
pgf.SetFromTrueDofs(x);
|
||||
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << *pmesh << *pgf
|
||||
sol_sock << "solution\n" << pmesh << pgf
|
||||
<< "window_title 'Iteration no " << i << "'"
|
||||
<< "keys rRjlc\n" << flush;
|
||||
}
|
||||
|
||||
private:
|
||||
const ParMesh *pmesh;
|
||||
ParGridFunction *pgf;
|
||||
};
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Initialize MPI and HYPRE.
|
||||
Mpi::Init(argc, argv);
|
||||
int num_procs = Mpi::WorldSize();
|
||||
int myid = Mpi::WorldRank();
|
||||
Hypre::Init();
|
||||
|
||||
// 2. Parse command-line options.
|
||||
@@ -81,10 +84,12 @@ int main(int argc, char *argv[])
|
||||
int ser_ref_levels = -1;
|
||||
int par_ref_levels = 2;
|
||||
int order = 1;
|
||||
double sigma = -1.0;
|
||||
double kappa = -1.0;
|
||||
double eta = 0.0;
|
||||
real_t sigma = -1.0;
|
||||
real_t kappa = -1.0;
|
||||
real_t eta = 0.0;
|
||||
bool pa = false;
|
||||
bool visualization = 1;
|
||||
const char *device_config = "cpu";
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -103,13 +108,17 @@ int main(int argc, char *argv[])
|
||||
"One of the three DG penalty parameters, should be positive."
|
||||
" Negative values are replaced with (order+1)^2.");
|
||||
args.AddOption(&eta, "-e", "--eta", "BR2 penalty parameter.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
if (myid == 0)
|
||||
if (Mpi::Root())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
}
|
||||
@@ -119,16 +128,19 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
kappa = (order+1)*(order+1);
|
||||
}
|
||||
if (myid == 0)
|
||||
if (Mpi::Root())
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
Device device(device_config);
|
||||
if (Mpi::Root()) { device.Print(); }
|
||||
|
||||
// 3. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral and hexahedral meshes
|
||||
// with the same code. NURBS meshes are projected to second order meshes.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
Mesh mesh(mesh_file);
|
||||
int dim = mesh.Dimension();
|
||||
|
||||
// 4. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// this example we do 'ser_ref_levels' of uniform refinement. By default,
|
||||
@@ -137,53 +149,54 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
if (ser_ref_levels < 0)
|
||||
{
|
||||
ser_ref_levels = (int)floor(log(10000./mesh->GetNE())/log(2.)/dim);
|
||||
ser_ref_levels = (int)floor(log(10000./mesh.GetNE())/log(2.)/dim);
|
||||
}
|
||||
for (int l = 0; l < ser_ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
}
|
||||
if (mesh->NURBSext)
|
||||
if (mesh.NURBSext)
|
||||
{
|
||||
mesh->SetCurvature(max(order, 1));
|
||||
mesh.SetCurvature(max(order, 1));
|
||||
}
|
||||
|
||||
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
delete mesh;
|
||||
ParMesh pmesh(MPI_COMM_WORLD, mesh);
|
||||
mesh.Clear();
|
||||
{
|
||||
for (int l = 0; l < par_ref_levels; l++)
|
||||
{
|
||||
pmesh->UniformRefinement();
|
||||
pmesh.UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 6. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use discontinuous finite elements of the specified order >= 0.
|
||||
FiniteElementCollection *fec = new DG_FECollection(order, dim);
|
||||
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
|
||||
HYPRE_BigInt size = fespace->GlobalTrueVSize();
|
||||
if (myid == 0)
|
||||
const auto bt = pa ? BasisType::GaussLobatto : BasisType::GaussLegendre;
|
||||
DG_FECollection fec(order, dim, bt);
|
||||
ParFiniteElementSpace fespace(&pmesh, &fec);
|
||||
HYPRE_BigInt size = fespace.GlobalTrueVSize();
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "Number of unknowns: " << size << endl;
|
||||
}
|
||||
|
||||
// 7. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system.
|
||||
ParLinearForm *b = new ParLinearForm(fespace);
|
||||
ParLinearForm b(&fespace);
|
||||
ConstantCoefficient one(1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
b->AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b->AddBdrFaceIntegrator(
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b.AddBdrFaceIntegrator(
|
||||
new DGDirichletLFIntegrator(zero, one, sigma, kappa));
|
||||
b->Assemble();
|
||||
b.Assemble();
|
||||
|
||||
// 8. Define the solution vector x as a parallel finite element grid function
|
||||
// corresponding to fespace. Initialize x with initial guess of zero.
|
||||
ParGridFunction x(fespace);
|
||||
ParGridFunction x(&fespace);
|
||||
x = 0.0;
|
||||
|
||||
// 9. Set up the bilinear form a(.,.) on the finite element space
|
||||
@@ -192,42 +205,51 @@ int main(int argc, char *argv[])
|
||||
// Note that boundary conditions are imposed weakly in the form, so there
|
||||
// is no need for dof elimination. After serial and parallel assembly we
|
||||
// extract the corresponding parallel matrix A.
|
||||
ParBilinearForm *a = new ParBilinearForm(fespace);
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
a->AddInteriorFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
a->AddBdrFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
ParBilinearForm a(&fespace);
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
a.AddInteriorFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
a.AddBdrFaceIntegrator(new DGDiffusionIntegrator(one, sigma, kappa));
|
||||
if (eta > 0)
|
||||
{
|
||||
a->AddInteriorFaceIntegrator(new DGDiffusionBR2Integrator(*fespace, eta));
|
||||
a->AddBdrFaceIntegrator(new DGDiffusionBR2Integrator(*fespace, eta));
|
||||
MFEM_VERIFY(!pa, "BR2 not yet compatible with partial assembly.");
|
||||
a.AddInteriorFaceIntegrator(new DGDiffusionBR2Integrator(fespace, eta));
|
||||
a.AddBdrFaceIntegrator(new DGDiffusionBR2Integrator(fespace, eta));
|
||||
}
|
||||
a->Assemble();
|
||||
a->Finalize();
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
a.Assemble();
|
||||
a.Finalize();
|
||||
|
||||
// 10. Define the parallel (hypre) matrix and vectors representing a(.,.),
|
||||
// b(.) and the finite element approximation.
|
||||
HypreParMatrix *A = a->ParallelAssemble();
|
||||
HypreParVector *B = b->ParallelAssemble();
|
||||
HypreParVector *X = x.ParallelProject();
|
||||
OperatorHandle A;
|
||||
|
||||
delete a;
|
||||
delete b;
|
||||
|
||||
// 11. Depending on the symmetry of A, define and apply a parallel PCG or
|
||||
// GMRES solver for AX=B using the BoomerAMG preconditioner from hypre.
|
||||
HypreSolver *amg = new HypreBoomerAMG(*A);
|
||||
if (sigma == -1.0)
|
||||
std::unique_ptr<HypreBoomerAMG> amg;
|
||||
if (pa)
|
||||
{
|
||||
HyprePCG pcg(*A);
|
||||
pcg.SetTol(1e-12);
|
||||
pcg.SetMaxIter(500);
|
||||
pcg.SetPrintLevel(2);
|
||||
pcg.SetPreconditioner(*amg);
|
||||
pcg.Mult(*B, *X);
|
||||
A.Reset(&a, false);
|
||||
}
|
||||
else
|
||||
{
|
||||
CustomSolverMonitor monitor(pmesh, &x);
|
||||
A.SetType(Operator::Hypre_ParCSR);
|
||||
a.ParallelAssemble(A);
|
||||
amg.reset(new HypreBoomerAMG(*A.As<HypreParMatrix>()));
|
||||
}
|
||||
|
||||
// 11. Depending on the symmetry of A, define and apply a parallel PCG or
|
||||
// GMRES solver for AX=B using the BoomerAMG preconditioner from hypre.
|
||||
if (sigma == -1.0)
|
||||
{
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(500);
|
||||
cg.SetPrintLevel(1);
|
||||
cg.SetOperator(*A);
|
||||
if (amg) { cg.SetPreconditioner(*amg); }
|
||||
cg.Mult(b, x);
|
||||
}
|
||||
else
|
||||
{
|
||||
CustomSolverMonitor monitor(pmesh, x);
|
||||
GMRESSolver gmres(MPI_COMM_WORLD);
|
||||
gmres.SetAbsTol(0.0);
|
||||
gmres.SetRelTol(1e-12);
|
||||
@@ -235,51 +257,37 @@ int main(int argc, char *argv[])
|
||||
gmres.SetKDim(10);
|
||||
gmres.SetPrintLevel(1);
|
||||
gmres.SetOperator(*A);
|
||||
gmres.SetPreconditioner(*amg);
|
||||
if (amg) { gmres.SetPreconditioner(*amg); }
|
||||
gmres.SetMonitor(monitor);
|
||||
gmres.Mult(*B, *X);
|
||||
gmres.Mult(b, x);
|
||||
}
|
||||
delete amg;
|
||||
|
||||
// 12. Extract the parallel grid function corresponding to the finite element
|
||||
// approximation X. This is the local solution on each processor.
|
||||
x = *X;
|
||||
|
||||
// 13. Save the refined mesh and the solution in parallel. This output can
|
||||
// 12. Save the refined mesh and the solution in parallel. This output can
|
||||
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
|
||||
{
|
||||
ostringstream mesh_name, sol_name;
|
||||
mesh_name << "mesh." << setfill('0') << setw(6) << myid;
|
||||
sol_name << "sol." << setfill('0') << setw(6) << myid;
|
||||
mesh_name << "mesh." << setfill('0') << setw(6) << Mpi::WorldRank();
|
||||
sol_name << "sol." << setfill('0') << setw(6) << Mpi::WorldRank();
|
||||
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(8);
|
||||
pmesh->Print(mesh_ofs);
|
||||
pmesh.Print(mesh_ofs);
|
||||
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(8);
|
||||
x.Save(sol_ofs);
|
||||
}
|
||||
|
||||
// 14. Send the solution by socket to a GLVis server.
|
||||
// 13. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock << "parallel " << Mpi::WorldSize() << " " << Mpi::WorldRank() << "\n";
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << *pmesh << x << flush;
|
||||
sol_sock << "solution\n" << pmesh << x << flush;
|
||||
}
|
||||
|
||||
// 15. Free the used memory.
|
||||
delete X;
|
||||
delete B;
|
||||
delete A;
|
||||
|
||||
delete fespace;
|
||||
delete fec;
|
||||
delete pmesh;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
+30
-30
@@ -63,8 +63,8 @@ int problem;
|
||||
int nfeatures;
|
||||
|
||||
// Prescribed time-dependent boundary and right-hand side functions.
|
||||
double bdr_func(const Vector &pt, double t);
|
||||
double rhs_func(const Vector &pt, double t);
|
||||
real_t bdr_func(const Vector &pt, real_t t);
|
||||
real_t rhs_func(const Vector &pt, real_t t);
|
||||
|
||||
// Update the finite element space, interpolate the solution and perform
|
||||
// parallel load balancing.
|
||||
@@ -79,9 +79,9 @@ int main(int argc, char *argv[])
|
||||
nfeatures = 1;
|
||||
const char *mesh_file = "../data/star-hilbert.mesh";
|
||||
int order = 2;
|
||||
double t_final = 1.0;
|
||||
double max_elem_error = 5.0e-3;
|
||||
double hysteresis = 0.15; // derefinement safety coefficient
|
||||
real_t t_final = 1.0;
|
||||
real_t max_elem_error = 5.0e-3;
|
||||
real_t hysteresis = 0.15; // derefinement safety coefficient
|
||||
int ref_levels = 0;
|
||||
int nc_limit = 3; // maximum level of hanging nodes
|
||||
bool visualization = true;
|
||||
@@ -247,7 +247,7 @@ int main(int argc, char *argv[])
|
||||
// refine the mesh as many times as necessary. Then we derefine any
|
||||
// elements which have very small errors.
|
||||
x = 0.0;
|
||||
for (double time = 0.0; time < t_final + 1e-10; time += 0.01)
|
||||
for (real_t time = 0.0; time < t_final + 1e-10; time += 0.01)
|
||||
{
|
||||
cout << "\nTime " << time << "\n\nRefinement:" << endl;
|
||||
|
||||
@@ -366,47 +366,47 @@ void UpdateProblem(Mesh &mesh, FiniteElementSpace &fespace,
|
||||
}
|
||||
|
||||
|
||||
const double alpha = 0.02;
|
||||
const real_t alpha = 0.02;
|
||||
|
||||
// Spherical front with a Gaussian cross section and radius t
|
||||
double front(double x, double y, double z, double t, int)
|
||||
real_t front(real_t x, real_t y, real_t z, real_t t, int)
|
||||
{
|
||||
double r = sqrt(x*x + y*y + z*z);
|
||||
real_t r = sqrt(x*x + y*y + z*z);
|
||||
return exp(-0.5*pow((r - t)/alpha, 2));
|
||||
}
|
||||
|
||||
double front_laplace(double x, double y, double z, double t, int dim)
|
||||
real_t front_laplace(real_t x, real_t y, real_t z, real_t t, int dim)
|
||||
{
|
||||
double x2 = x*x, y2 = y*y, z2 = z*z, t2 = t*t;
|
||||
double r = sqrt(x2 + y2 + z2);
|
||||
double a2 = alpha*alpha, a4 = a2*a2;
|
||||
real_t x2 = x*x, y2 = y*y, z2 = z*z, t2 = t*t;
|
||||
real_t r = sqrt(x2 + y2 + z2);
|
||||
real_t a2 = alpha*alpha, a4 = a2*a2;
|
||||
return -exp(-0.5*pow((r - t)/alpha, 2)) / a4 *
|
||||
(-2*t*(x2 + y2 + z2 - (dim-1)*a2/2)/r + x2 + y2 + z2 + t2 - dim*a2);
|
||||
}
|
||||
|
||||
// Smooth spherical step function with radius t
|
||||
double ball(double x, double y, double z, double t, int)
|
||||
real_t ball(real_t x, real_t y, real_t z, real_t t, int)
|
||||
{
|
||||
double r = sqrt(x*x + y*y + z*z);
|
||||
real_t r = sqrt(x*x + y*y + z*z);
|
||||
return -atan(2*(r - t)/alpha);
|
||||
}
|
||||
|
||||
double ball_laplace(double x, double y, double z, double t, int dim)
|
||||
real_t ball_laplace(real_t x, real_t y, real_t z, real_t t, int dim)
|
||||
{
|
||||
double x2 = x*x, y2 = y*y, z2 = z*z, t2 = 4*t*t;
|
||||
double r = sqrt(x2 + y2 + z2);
|
||||
double a2 = alpha*alpha;
|
||||
double den = pow(-a2 - 4*(x2 + y2 + z2 - 2*r*t) - t2, 2.0);
|
||||
real_t x2 = x*x, y2 = y*y, z2 = z*z, t2 = 4*t*t;
|
||||
real_t r = sqrt(x2 + y2 + z2);
|
||||
real_t a2 = alpha*alpha;
|
||||
real_t den = pow(-a2 - 4*(x2 + y2 + z2 - 2*r*t) - t2, 2.0);
|
||||
return (dim == 2) ? 2*alpha*(a2 + t2 - 4*x2 - 4*y2)/r/den
|
||||
/* */ : 4*alpha*(a2 + t2 - 4*r*t)/r/den;
|
||||
}
|
||||
|
||||
// Composes several features into one function
|
||||
template<typename F0, typename F1>
|
||||
double composite_func(const Vector &pt, double t, F0 f0, F1 f1)
|
||||
real_t composite_func(const Vector &pt, real_t t, F0 f0, F1 f1)
|
||||
{
|
||||
int dim = pt.Size();
|
||||
double x = pt(0), y = pt(1), z = 0.0;
|
||||
real_t x = pt(0), y = pt(1), z = 0.0;
|
||||
if (dim == 3) { z = pt(2); }
|
||||
|
||||
if (problem == 0)
|
||||
@@ -417,11 +417,11 @@ double composite_func(const Vector &pt, double t, F0 f0, F1 f1)
|
||||
}
|
||||
else
|
||||
{
|
||||
double sum = 0.0;
|
||||
real_t sum = 0.0;
|
||||
for (int i = 0; i < nfeatures; i++)
|
||||
{
|
||||
double x0 = 0.5*cos(2*M_PI * i / nfeatures);
|
||||
double y0 = 0.5*sin(2*M_PI * i / nfeatures);
|
||||
real_t x0 = 0.5*cos(2*M_PI * i / nfeatures);
|
||||
real_t y0 = 0.5*sin(2*M_PI * i / nfeatures);
|
||||
sum += f0(x - x0, y - y0, z, t, dim);
|
||||
}
|
||||
return sum;
|
||||
@@ -429,11 +429,11 @@ double composite_func(const Vector &pt, double t, F0 f0, F1 f1)
|
||||
}
|
||||
else
|
||||
{
|
||||
double sum = 0.0;
|
||||
real_t sum = 0.0;
|
||||
for (int i = 0; i < nfeatures; i++)
|
||||
{
|
||||
double x0 = 0.5*cos(2*M_PI * i / nfeatures + M_PI*t);
|
||||
double y0 = 0.5*sin(2*M_PI * i / nfeatures + M_PI*t);
|
||||
real_t x0 = 0.5*cos(2*M_PI * i / nfeatures + M_PI*t);
|
||||
real_t y0 = 0.5*sin(2*M_PI * i / nfeatures + M_PI*t);
|
||||
sum += f1(x - x0, y - y0, z, 0.25, dim);
|
||||
}
|
||||
return sum;
|
||||
@@ -441,13 +441,13 @@ double composite_func(const Vector &pt, double t, F0 f0, F1 f1)
|
||||
}
|
||||
|
||||
// Exact solution, used for the Dirichlet BC.
|
||||
double bdr_func(const Vector &pt, double t)
|
||||
real_t bdr_func(const Vector &pt, real_t t)
|
||||
{
|
||||
return composite_func(pt, t, front, ball);
|
||||
}
|
||||
|
||||
// Laplace of the exact solution, used for the right hand side.
|
||||
double rhs_func(const Vector &pt, double t)
|
||||
real_t rhs_func(const Vector &pt, real_t t)
|
||||
{
|
||||
return composite_func(pt, t, front_laplace, ball_laplace);
|
||||
}
|
||||
|
||||
+30
-30
@@ -68,8 +68,8 @@ int problem;
|
||||
int nfeatures;
|
||||
|
||||
// Prescribed time-dependent boundary and right-hand side functions.
|
||||
double bdr_func(const Vector &pt, double t);
|
||||
double rhs_func(const Vector &pt, double t);
|
||||
real_t bdr_func(const Vector &pt, real_t t);
|
||||
real_t rhs_func(const Vector &pt, real_t t);
|
||||
|
||||
// Update the finite element space, interpolate the solution and perform
|
||||
// parallel load balancing.
|
||||
@@ -91,9 +91,9 @@ int main(int argc, char *argv[])
|
||||
nfeatures = 1;
|
||||
const char *mesh_file = "../data/star-hilbert.mesh";
|
||||
int order = 2;
|
||||
double t_final = 1.0;
|
||||
double max_elem_error = 1.0e-4;
|
||||
double hysteresis = 0.25; // derefinement safety coefficient
|
||||
real_t t_final = 1.0;
|
||||
real_t max_elem_error = 1.0e-4;
|
||||
real_t hysteresis = 0.25; // derefinement safety coefficient
|
||||
int ref_levels = 0;
|
||||
int nc_limit = 3; // maximum level of hanging nodes
|
||||
bool visualization = true;
|
||||
@@ -282,7 +282,7 @@ int main(int argc, char *argv[])
|
||||
// solve the problem on the current mesh, visualize the solution and
|
||||
// refine the mesh as many times as necessary. Then we derefine any
|
||||
// elements which have very small errors.
|
||||
for (double time = 0.0; time < t_final + 1e-10; time += 0.01)
|
||||
for (real_t time = 0.0; time < t_final + 1e-10; time += 0.01)
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
@@ -427,47 +427,47 @@ void UpdateAndRebalance(ParMesh &pmesh, ParFiniteElementSpace &fespace,
|
||||
}
|
||||
|
||||
|
||||
const double alpha = 0.02;
|
||||
const real_t alpha = 0.02;
|
||||
|
||||
// Spherical front with a Gaussian cross section and radius t
|
||||
double front(double x, double y, double z, double t, int)
|
||||
real_t front(real_t x, real_t y, real_t z, real_t t, int)
|
||||
{
|
||||
double r = sqrt(x*x + y*y + z*z);
|
||||
real_t r = sqrt(x*x + y*y + z*z);
|
||||
return exp(-0.5*pow((r - t)/alpha, 2));
|
||||
}
|
||||
|
||||
double front_laplace(double x, double y, double z, double t, int dim)
|
||||
real_t front_laplace(real_t x, real_t y, real_t z, real_t t, int dim)
|
||||
{
|
||||
double x2 = x*x, y2 = y*y, z2 = z*z, t2 = t*t;
|
||||
double r = sqrt(x2 + y2 + z2);
|
||||
double a2 = alpha*alpha, a4 = a2*a2;
|
||||
real_t x2 = x*x, y2 = y*y, z2 = z*z, t2 = t*t;
|
||||
real_t r = sqrt(x2 + y2 + z2);
|
||||
real_t a2 = alpha*alpha, a4 = a2*a2;
|
||||
return -exp(-0.5*pow((r - t)/alpha, 2)) / a4 *
|
||||
(-2*t*(x2 + y2 + z2 - (dim-1)*a2/2)/r + x2 + y2 + z2 + t2 - dim*a2);
|
||||
}
|
||||
|
||||
// Smooth spherical step function with radius t
|
||||
double ball(double x, double y, double z, double t, int)
|
||||
real_t ball(real_t x, real_t y, real_t z, real_t t, int)
|
||||
{
|
||||
double r = sqrt(x*x + y*y + z*z);
|
||||
real_t r = sqrt(x*x + y*y + z*z);
|
||||
return -atan(2*(r - t)/alpha);
|
||||
}
|
||||
|
||||
double ball_laplace(double x, double y, double z, double t, int dim)
|
||||
real_t ball_laplace(real_t x, real_t y, real_t z, real_t t, int dim)
|
||||
{
|
||||
double x2 = x*x, y2 = y*y, z2 = z*z, t2 = 4*t*t;
|
||||
double r = sqrt(x2 + y2 + z2);
|
||||
double a2 = alpha*alpha;
|
||||
double den = pow(-a2 - 4*(x2 + y2 + z2 - 2*r*t) - t2, 2.0);
|
||||
real_t x2 = x*x, y2 = y*y, z2 = z*z, t2 = 4*t*t;
|
||||
real_t r = sqrt(x2 + y2 + z2);
|
||||
real_t a2 = alpha*alpha;
|
||||
real_t den = pow(-a2 - 4*(x2 + y2 + z2 - 2*r*t) - t2, 2.0);
|
||||
return (dim == 2) ? 2*alpha*(a2 + t2 - 4*x2 - 4*y2)/r/den
|
||||
/* */ : 4*alpha*(a2 + t2 - 4*r*t)/r/den;
|
||||
}
|
||||
|
||||
// Composes several features into one function
|
||||
template<typename F0, typename F1>
|
||||
double composite_func(const Vector &pt, double t, F0 f0, F1 f1)
|
||||
real_t composite_func(const Vector &pt, real_t t, F0 f0, F1 f1)
|
||||
{
|
||||
int dim = pt.Size();
|
||||
double x = pt(0), y = pt(1), z = 0.0;
|
||||
real_t x = pt(0), y = pt(1), z = 0.0;
|
||||
if (dim == 3) { z = pt(2); }
|
||||
|
||||
if (problem == 0)
|
||||
@@ -478,11 +478,11 @@ double composite_func(const Vector &pt, double t, F0 f0, F1 f1)
|
||||
}
|
||||
else
|
||||
{
|
||||
double sum = 0.0;
|
||||
real_t sum = 0.0;
|
||||
for (int i = 0; i < nfeatures; i++)
|
||||
{
|
||||
double x0 = 0.5*cos(2*M_PI * i / nfeatures);
|
||||
double y0 = 0.5*sin(2*M_PI * i / nfeatures);
|
||||
real_t x0 = 0.5*cos(2*M_PI * i / nfeatures);
|
||||
real_t y0 = 0.5*sin(2*M_PI * i / nfeatures);
|
||||
sum += f0(x - x0, y - y0, z, t, dim);
|
||||
}
|
||||
return sum;
|
||||
@@ -490,11 +490,11 @@ double composite_func(const Vector &pt, double t, F0 f0, F1 f1)
|
||||
}
|
||||
else
|
||||
{
|
||||
double sum = 0.0;
|
||||
real_t sum = 0.0;
|
||||
for (int i = 0; i < nfeatures; i++)
|
||||
{
|
||||
double x0 = 0.5*cos(2*M_PI * i / nfeatures + M_PI*t);
|
||||
double y0 = 0.5*sin(2*M_PI * i / nfeatures + M_PI*t);
|
||||
real_t x0 = 0.5*cos(2*M_PI * i / nfeatures + M_PI*t);
|
||||
real_t y0 = 0.5*sin(2*M_PI * i / nfeatures + M_PI*t);
|
||||
sum += f1(x - x0, y - y0, z, 0.25, dim);
|
||||
}
|
||||
return sum;
|
||||
@@ -502,13 +502,13 @@ double composite_func(const Vector &pt, double t, F0 f0, F1 f1)
|
||||
}
|
||||
|
||||
// Exact solution, used for the Dirichlet BC.
|
||||
double bdr_func(const Vector &pt, double t)
|
||||
real_t bdr_func(const Vector &pt, real_t t)
|
||||
{
|
||||
return composite_func(pt, t, front, ball);
|
||||
}
|
||||
|
||||
// Laplace of the exact solution, used for the right hand side.
|
||||
double rhs_func(const Vector &pt, double t)
|
||||
real_t rhs_func(const Vector &pt, real_t t)
|
||||
{
|
||||
return composite_func(pt, t, front_laplace, ball_laplace);
|
||||
}
|
||||
|
||||
+17
-17
@@ -60,7 +60,7 @@ protected:
|
||||
|
||||
SparseMatrix Mmat, Kmat;
|
||||
SparseMatrix *T; // T = M + dt K
|
||||
double current_dt;
|
||||
real_t current_dt;
|
||||
|
||||
CGSolver M_solver; // Krylov solver for inverting the mass matrix M
|
||||
DSmoother M_prec; // Preconditioner for the mass matrix M
|
||||
@@ -68,18 +68,18 @@ protected:
|
||||
CGSolver T_solver; // Implicit solver for T = M + dt K
|
||||
DSmoother T_prec; // Preconditioner for the implicit solver
|
||||
|
||||
double alpha, kappa;
|
||||
real_t alpha, kappa;
|
||||
|
||||
mutable Vector z; // auxiliary vector
|
||||
|
||||
public:
|
||||
ConductionOperator(FiniteElementSpace &f, double alpha, double kappa,
|
||||
ConductionOperator(FiniteElementSpace &f, real_t alpha, real_t kappa,
|
||||
const Vector &u);
|
||||
|
||||
virtual void Mult(const Vector &u, Vector &du_dt) const;
|
||||
/** Solve the Backward-Euler equation: k = f(u + dt*k, t), for the unknown k.
|
||||
This is the only requirement for high-order SDIRK implicit integration.*/
|
||||
virtual void ImplicitSolve(const double dt, const Vector &u, Vector &k);
|
||||
virtual void ImplicitSolve(const real_t dt, const Vector &u, Vector &k);
|
||||
|
||||
/// Update the diffusion BilinearForm K using the given true-dof vector `u`.
|
||||
void SetParameters(const Vector &u);
|
||||
@@ -87,7 +87,7 @@ public:
|
||||
virtual ~ConductionOperator();
|
||||
};
|
||||
|
||||
double InitialTemperature(const Vector &x);
|
||||
real_t InitialTemperature(const Vector &x);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -96,10 +96,10 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 2;
|
||||
int order = 2;
|
||||
int ode_solver_type = 3;
|
||||
double t_final = 0.5;
|
||||
double dt = 1.0e-2;
|
||||
double alpha = 1.0e-2;
|
||||
double kappa = 0.5;
|
||||
real_t t_final = 0.5;
|
||||
real_t dt = 1.0e-2;
|
||||
real_t alpha = 1.0e-2;
|
||||
real_t kappa = 0.5;
|
||||
bool visualization = true;
|
||||
bool visit = false;
|
||||
int vis_steps = 5;
|
||||
@@ -246,7 +246,7 @@ int main(int argc, char *argv[])
|
||||
// 8. Perform time-integration (looping over the time iterations, ti, with a
|
||||
// time-step dt).
|
||||
ode_solver->Init(oper);
|
||||
double t = 0.0;
|
||||
real_t t = 0.0;
|
||||
|
||||
bool last_step = false;
|
||||
for (int ti = 1; !last_step; ti++)
|
||||
@@ -293,12 +293,12 @@ int main(int argc, char *argv[])
|
||||
return 0;
|
||||
}
|
||||
|
||||
ConductionOperator::ConductionOperator(FiniteElementSpace &f, double al,
|
||||
double kap, const Vector &u)
|
||||
: TimeDependentOperator(f.GetTrueVSize(), 0.0), fespace(f), M(NULL), K(NULL),
|
||||
T(NULL), current_dt(0.0), z(height)
|
||||
ConductionOperator::ConductionOperator(FiniteElementSpace &f, real_t al,
|
||||
real_t kap, const Vector &u)
|
||||
: TimeDependentOperator(f.GetTrueVSize(), (real_t) 0.0), fespace(f),
|
||||
M(NULL), K(NULL), T(NULL), current_dt(0.0), z(height)
|
||||
{
|
||||
const double rel_tol = 1e-8;
|
||||
const real_t rel_tol = 1e-8;
|
||||
|
||||
M = new BilinearForm(&fespace);
|
||||
M->AddDomainIntegrator(new MassIntegrator());
|
||||
@@ -336,7 +336,7 @@ void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
|
||||
M_solver.Mult(z, du_dt);
|
||||
}
|
||||
|
||||
void ConductionOperator::ImplicitSolve(const double dt,
|
||||
void ConductionOperator::ImplicitSolve(const real_t dt,
|
||||
const Vector &u, Vector &du_dt)
|
||||
{
|
||||
// Solve the equation:
|
||||
@@ -382,7 +382,7 @@ ConductionOperator::~ConductionOperator()
|
||||
delete K;
|
||||
}
|
||||
|
||||
double InitialTemperature(const Vector &x)
|
||||
real_t InitialTemperature(const Vector &x)
|
||||
{
|
||||
if (x.Norml2() < 0.5)
|
||||
{
|
||||
|
||||
+17
-17
@@ -62,7 +62,7 @@ protected:
|
||||
HypreParMatrix Mmat;
|
||||
HypreParMatrix Kmat;
|
||||
HypreParMatrix *T; // T = M + dt K
|
||||
double current_dt;
|
||||
real_t current_dt;
|
||||
|
||||
CGSolver M_solver; // Krylov solver for inverting the mass matrix M
|
||||
HypreSmoother M_prec; // Preconditioner for the mass matrix M
|
||||
@@ -70,18 +70,18 @@ protected:
|
||||
CGSolver T_solver; // Implicit solver for T = M + dt K
|
||||
HypreSmoother T_prec; // Preconditioner for the implicit solver
|
||||
|
||||
double alpha, kappa;
|
||||
real_t alpha, kappa;
|
||||
|
||||
mutable Vector z; // auxiliary vector
|
||||
|
||||
public:
|
||||
ConductionOperator(ParFiniteElementSpace &f, double alpha, double kappa,
|
||||
ConductionOperator(ParFiniteElementSpace &f, real_t alpha, real_t kappa,
|
||||
const Vector &u);
|
||||
|
||||
virtual void Mult(const Vector &u, Vector &du_dt) const;
|
||||
/** Solve the Backward-Euler equation: k = f(u + dt*k, t), for the unknown k.
|
||||
This is the only requirement for high-order SDIRK implicit integration.*/
|
||||
virtual void ImplicitSolve(const double dt, const Vector &u, Vector &k);
|
||||
virtual void ImplicitSolve(const real_t dt, const Vector &u, Vector &k);
|
||||
|
||||
/// Update the diffusion BilinearForm K using the given true-dof vector `u`.
|
||||
void SetParameters(const Vector &u);
|
||||
@@ -89,7 +89,7 @@ public:
|
||||
virtual ~ConductionOperator();
|
||||
};
|
||||
|
||||
double InitialTemperature(const Vector &x);
|
||||
real_t InitialTemperature(const Vector &x);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -105,10 +105,10 @@ int main(int argc, char *argv[])
|
||||
int par_ref_levels = 1;
|
||||
int order = 2;
|
||||
int ode_solver_type = 3;
|
||||
double t_final = 0.5;
|
||||
double dt = 1.0e-2;
|
||||
double alpha = 1.0e-2;
|
||||
double kappa = 0.5;
|
||||
real_t t_final = 0.5;
|
||||
real_t dt = 1.0e-2;
|
||||
real_t alpha = 1.0e-2;
|
||||
real_t kappa = 0.5;
|
||||
bool visualization = true;
|
||||
bool visit = false;
|
||||
int vis_steps = 5;
|
||||
@@ -313,7 +313,7 @@ int main(int argc, char *argv[])
|
||||
// 10. Perform time-integration (looping over the time iterations, ti, with a
|
||||
// time-step dt).
|
||||
ode_solver->Init(oper);
|
||||
double t = 0.0;
|
||||
real_t t = 0.0;
|
||||
|
||||
bool last_step = false;
|
||||
for (int ti = 1; !last_step; ti++)
|
||||
@@ -382,13 +382,13 @@ int main(int argc, char *argv[])
|
||||
return 0;
|
||||
}
|
||||
|
||||
ConductionOperator::ConductionOperator(ParFiniteElementSpace &f, double al,
|
||||
double kap, const Vector &u)
|
||||
: TimeDependentOperator(f.GetTrueVSize(), 0.0), fespace(f), M(NULL), K(NULL),
|
||||
T(NULL), current_dt(0.0),
|
||||
ConductionOperator::ConductionOperator(ParFiniteElementSpace &f, real_t al,
|
||||
real_t kap, const Vector &u)
|
||||
: TimeDependentOperator(f.GetTrueVSize(), (real_t) 0.0), fespace(f),
|
||||
M(NULL), K(NULL), T(NULL), current_dt(0.0),
|
||||
M_solver(f.GetComm()), T_solver(f.GetComm()), z(height)
|
||||
{
|
||||
const double rel_tol = 1e-8;
|
||||
const real_t rel_tol = 1e-8;
|
||||
|
||||
M = new ParBilinearForm(&fespace);
|
||||
M->AddDomainIntegrator(new MassIntegrator());
|
||||
@@ -427,7 +427,7 @@ void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
|
||||
M_solver.Mult(z, du_dt);
|
||||
}
|
||||
|
||||
void ConductionOperator::ImplicitSolve(const double dt,
|
||||
void ConductionOperator::ImplicitSolve(const real_t dt,
|
||||
const Vector &u, Vector &du_dt)
|
||||
{
|
||||
// Solve the equation:
|
||||
@@ -473,7 +473,7 @@ ConductionOperator::~ConductionOperator()
|
||||
delete K;
|
||||
}
|
||||
|
||||
double InitialTemperature(const Vector &x)
|
||||
real_t InitialTemperature(const Vector &x)
|
||||
{
|
||||
if (x.Norml2() < 0.5)
|
||||
{
|
||||
|
||||
+8
-8
@@ -69,7 +69,7 @@ public:
|
||||
void SetDisplacement(GridFunction &u_) { u = &u_; }
|
||||
void SetComponent(int i, int j) { si = i; sj = j; }
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
virtual real_t Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
// Simple GLVis visualization manager.
|
||||
@@ -104,8 +104,8 @@ int main(int argc, char *argv[])
|
||||
const char *mesh_file = "../data/beam-tri.mesh";
|
||||
int ref_levels = -1;
|
||||
int order = 1;
|
||||
double alpha = -1.0;
|
||||
double kappa = -1.0;
|
||||
real_t alpha = -1.0;
|
||||
real_t kappa = -1.0;
|
||||
bool visualization = 1;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
@@ -245,7 +245,7 @@ int main(int argc, char *argv[])
|
||||
// solve the system Ax=b with PCG for the symmetric formulation, or GMRES
|
||||
// for the non-symmetric.
|
||||
GSSmoother M(A);
|
||||
const double rtol = 1e-6;
|
||||
const real_t rtol = 1e-6;
|
||||
if (alpha == -1.0)
|
||||
{
|
||||
PCG(A, M, B, X, 3, 5000, rtol*rtol, 0.0);
|
||||
@@ -337,17 +337,17 @@ void InitDisplacement(const Vector &x, Vector &u)
|
||||
}
|
||||
|
||||
|
||||
double StressCoefficient::Eval(ElementTransformation &T,
|
||||
real_t StressCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(u != NULL, "displacement field is not set");
|
||||
|
||||
double L = lambda.Eval(T, ip);
|
||||
double M = mu.Eval(T, ip);
|
||||
real_t L = lambda.Eval(T, ip);
|
||||
real_t M = mu.Eval(T, ip);
|
||||
u->GetVectorGradient(T, grad);
|
||||
if (si == sj)
|
||||
{
|
||||
double div_u = grad.Trace();
|
||||
real_t div_u = grad.Trace();
|
||||
return L*div_u + 2*M*grad(si,si);
|
||||
}
|
||||
else
|
||||
|
||||
+8
-8
@@ -69,7 +69,7 @@ public:
|
||||
void SetDisplacement(GridFunction &u_) { u = &u_; }
|
||||
void SetComponent(int i, int j) { si = i; sj = j; }
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
virtual real_t Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
// Simple GLVis visualization manager.
|
||||
@@ -108,8 +108,8 @@ int main(int argc, char *argv[])
|
||||
int ser_ref_levels = -1;
|
||||
int par_ref_levels = 1;
|
||||
int order = 1;
|
||||
double alpha = -1.0;
|
||||
double kappa = -1.0;
|
||||
real_t alpha = -1.0;
|
||||
real_t kappa = -1.0;
|
||||
bool amg_elast = false;
|
||||
bool visualization = 1;
|
||||
|
||||
@@ -268,7 +268,7 @@ int main(int argc, char *argv[])
|
||||
// 11. Define a simple symmetric Gauss-Seidel preconditioner and use it to
|
||||
// solve the system Ax=b with PCG for the symmetric formulation, or GMRES
|
||||
// for the non-symmetric.
|
||||
const double rtol = 1e-6;
|
||||
const real_t rtol = 1e-6;
|
||||
HypreBoomerAMG amg(A);
|
||||
if (amg_elast)
|
||||
{
|
||||
@@ -376,17 +376,17 @@ void InitDisplacement(const Vector &x, Vector &u)
|
||||
}
|
||||
|
||||
|
||||
double StressCoefficient::Eval(ElementTransformation &T,
|
||||
real_t StressCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(u != NULL, "displacement field is not set");
|
||||
|
||||
double L = lambda.Eval(T, ip);
|
||||
double M = mu.Eval(T, ip);
|
||||
real_t L = lambda.Eval(T, ip);
|
||||
real_t M = mu.Eval(T, ip);
|
||||
u->GetVectorGradient(T, grad);
|
||||
if (si == sj)
|
||||
{
|
||||
double div_u = grad.Trace();
|
||||
real_t div_u = grad.Trace();
|
||||
return L*div_u + 2*M*grad(si,si);
|
||||
}
|
||||
else
|
||||
|
||||
+125
-123
@@ -7,13 +7,19 @@
|
||||
// ex18 -p 1 -r 2 -o 1 -s 3
|
||||
// ex18 -p 1 -r 1 -o 3 -s 4
|
||||
// ex18 -p 1 -r 0 -o 5 -s 6
|
||||
// ex18 -p 2 -r 1 -o 1 -s 3
|
||||
// ex18 -p 2 -r 0 -o 3 -s 3
|
||||
// ex18 -p 2 -r 1 -o 1 -s 3 -mf
|
||||
// ex18 -p 2 -r 0 -o 3 -s 3 -mf
|
||||
//
|
||||
// Description: This example code solves the compressible Euler system of
|
||||
// equations, a model nonlinear hyperbolic PDE, with a
|
||||
// discontinuous Galerkin (DG) formulation.
|
||||
//
|
||||
// (u_t, v)_T - (F(u), ∇ v)_T + <F̂(u,n), [[v]]>_F = 0
|
||||
//
|
||||
// where (⋅,⋅)_T is volume integration, and <⋅,⋅>_F is face
|
||||
// integration, F is the Euler flux function, and F̂ is the
|
||||
// numerical flux.
|
||||
//
|
||||
// Specifically, it solves for an exact solution of the equations
|
||||
// whereby a vortex is transported by a uniform flow. Since all
|
||||
// boundaries are periodic here, the method's accuracy can be
|
||||
@@ -27,49 +33,47 @@
|
||||
// method. An additional factor can be tuned by passing the --cfl
|
||||
// (or -c shorter) flag.
|
||||
//
|
||||
// The example demonstrates user-defined bilinear and nonlinear
|
||||
// form integrators for systems of equations that are defined with
|
||||
// block vectors, and how these are used with an operator for
|
||||
// explicit time integrators. In this case the system also
|
||||
// involves an external approximate Riemann solver for the DG
|
||||
// interface flux. It also demonstrates how to use GLVis for
|
||||
// in-situ visualization of vector grid functions.
|
||||
// The example demonstrates usage of DGHyperbolicConservationLaws
|
||||
// that wraps NonlinearFormIntegrators containing element and face
|
||||
// integration schemes. In this case the system also involves an
|
||||
// external approximate Riemann solver for the DG interface flux.
|
||||
// By default, weak-divergence is pre-assembled in element-wise
|
||||
// manner, which corresponds to (I_h(F(u_h)), ∇ v). This yields
|
||||
// better performance and similar accuracy for the included test
|
||||
// problems. This can be turned off and use nonlinear assembly
|
||||
// similar to matrix-free assembly when -mf flag is provided.
|
||||
// It also demonstrates how to use GLVis for in-situ visualization
|
||||
// of vector grid function and how to set top-view.
|
||||
//
|
||||
// We recommend viewing examples 9, 14 and 17 before viewing this
|
||||
// example.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <sstream>
|
||||
#include <iostream>
|
||||
|
||||
// Classes FE_Evolution, RiemannSolver, and FaceIntegrator
|
||||
// shared between the serial and parallel version of the example.
|
||||
#include <sstream>
|
||||
#include "ex18.hpp"
|
||||
|
||||
// Choice for the problem setup. See InitialCondition in ex18.hpp.
|
||||
int problem;
|
||||
|
||||
// Equation constant parameters.
|
||||
const int num_equation = 4;
|
||||
const double specific_heat_ratio = 1.4;
|
||||
const double gas_constant = 1.0;
|
||||
|
||||
// Maximum characteristic speed (updated by integrators)
|
||||
double max_char_speed;
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command-line options.
|
||||
problem = 1;
|
||||
const char *mesh_file = "../data/periodic-square.mesh";
|
||||
int problem = 1;
|
||||
const real_t specific_heat_ratio = 1.4;
|
||||
const real_t gas_constant = 1.0;
|
||||
|
||||
string mesh_file = "";
|
||||
int IntOrderOffset = 1;
|
||||
int ref_levels = 1;
|
||||
int order = 3;
|
||||
int ode_solver_type = 4;
|
||||
double t_final = 2.0;
|
||||
double dt = -0.01;
|
||||
double cfl = 0.3;
|
||||
real_t t_final = 2.0;
|
||||
real_t dt = -0.01;
|
||||
real_t cfl = 0.3;
|
||||
bool visualization = true;
|
||||
bool preassembleWeakDiv = true;
|
||||
int vis_steps = 50;
|
||||
|
||||
int precision = 8;
|
||||
@@ -77,9 +81,10 @@ int main(int argc, char *argv[])
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
"Mesh file to use. If not provided, then a periodic square"
|
||||
" mesh will be used.");
|
||||
args.AddOption(&problem, "-p", "--problem",
|
||||
"Problem setup to use. See options in velocity_function().");
|
||||
"Problem setup to use. See EulerInitialCondition().");
|
||||
args.AddOption(&ref_levels, "-r", "--refine",
|
||||
"Number of times to refine the mesh uniformly.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
@@ -87,8 +92,7 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
|
||||
"ODE solver: 1 - Forward Euler,\n\t"
|
||||
" 2 - RK2 SSP, 3 - RK3 SSP, 4 - RK4, 6 - RK6.");
|
||||
args.AddOption(&t_final, "-tf", "--t-final",
|
||||
"Final time; start time is 0.");
|
||||
args.AddOption(&t_final, "-tf", "--t-final", "Final time; start time is 0.");
|
||||
args.AddOption(&dt, "-dt", "--time-step",
|
||||
"Time step. Positive number skips CFL timestep calculation.");
|
||||
args.AddOption(&cfl, "-c", "--cfl-number",
|
||||
@@ -96,23 +100,28 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&preassembleWeakDiv, "-ea", "--element-assembly-divergence",
|
||||
"-mf", "--matrix-free-divergence",
|
||||
"Weak divergence assembly level\n"
|
||||
" ea - Element assembly with interpolated F\n"
|
||||
" mf - Nonlinear assembly in matrix-free manner");
|
||||
args.AddOption(&vis_steps, "-vs", "--visualization-steps",
|
||||
"Visualize every n-th timestep.");
|
||||
args.ParseCheck();
|
||||
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// 2. Read the mesh from the given mesh file. This example requires a 2D
|
||||
// periodic mesh, such as ../data/periodic-square.mesh.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
// 2. Read the mesh from the given mesh file. When the user does not provide
|
||||
// mesh file, use the default mesh file for the problem.
|
||||
Mesh mesh = mesh_file.empty() ? EulerMesh(problem) : Mesh(mesh_file);
|
||||
const int dim = mesh.Dimension();
|
||||
const int num_equations = dim + 2;
|
||||
|
||||
MFEM_ASSERT(dim == 2, "Need a two-dimensional mesh for the problem definition");
|
||||
// Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement, where 'ref_levels' is a command-line
|
||||
// parameter.
|
||||
for (int lev = 0; lev < ref_levels; lev++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 3. Define the ODE solver used for time integration. Several explicit
|
||||
// Runge-Kutta methods are available.
|
||||
@@ -129,15 +138,7 @@ int main(int argc, char *argv[])
|
||||
return 3;
|
||||
}
|
||||
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement, where 'ref_levels' is a
|
||||
// command-line parameter.
|
||||
for (int lev = 0; lev < ref_levels; lev++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 5. Define the discontinuous DG finite element space of the given
|
||||
// 4. Define the discontinuous DG finite element space of the given
|
||||
// polynomial order on the refined mesh.
|
||||
DG_FECollection fec(order, dim);
|
||||
// Finite element space for a scalar (thermodynamic quantity)
|
||||
@@ -145,81 +146,74 @@ int main(int argc, char *argv[])
|
||||
// Finite element space for a mesh-dim vector quantity (momentum)
|
||||
FiniteElementSpace dfes(&mesh, &fec, dim, Ordering::byNODES);
|
||||
// Finite element space for all variables together (total thermodynamic state)
|
||||
FiniteElementSpace vfes(&mesh, &fec, num_equation, Ordering::byNODES);
|
||||
FiniteElementSpace vfes(&mesh, &fec, num_equations, Ordering::byNODES);
|
||||
|
||||
// This example depends on this ordering of the space.
|
||||
MFEM_ASSERT(fes.GetOrdering() == Ordering::byNODES, "");
|
||||
|
||||
cout << "Number of unknowns: " << vfes.GetVSize() << endl;
|
||||
|
||||
// 6. Define the initial conditions, save the corresponding mesh and grid
|
||||
// functions to a file. This can be opened with GLVis with the -gc option.
|
||||
|
||||
// The solution u has components {density, x-momentum, y-momentum, energy}.
|
||||
// These are stored contiguously in the BlockVector u_block.
|
||||
Array<int> offsets(num_equation + 1);
|
||||
for (int k = 0; k <= num_equation; k++) { offsets[k] = k * vfes.GetNDofs(); }
|
||||
BlockVector u_block(offsets);
|
||||
|
||||
// Momentum grid function on dfes for visualization.
|
||||
GridFunction mom(&dfes, u_block.GetData() + offsets[1]);
|
||||
// 5. Define the initial conditions, save the corresponding mesh and grid
|
||||
// functions to files. These can be opened with GLVis using:
|
||||
// "glvis -m euler-mesh.mesh -g euler-1-init.gf" (for x-momentum).
|
||||
|
||||
// Initialize the state.
|
||||
VectorFunctionCoefficient u0(num_equation, InitialCondition);
|
||||
GridFunction sol(&vfes, u_block.GetData());
|
||||
VectorFunctionCoefficient u0 = EulerInitialCondition(problem,
|
||||
specific_heat_ratio,
|
||||
gas_constant);
|
||||
GridFunction sol(&vfes);
|
||||
sol.ProjectCoefficient(u0);
|
||||
|
||||
GridFunction mom(&dfes, sol.GetData() + fes.GetNDofs());
|
||||
// Output the initial solution.
|
||||
{
|
||||
ofstream mesh_ofs("vortex.mesh");
|
||||
ostringstream mesh_name;
|
||||
mesh_name << "euler-mesh.mesh";
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(precision);
|
||||
mesh_ofs << mesh;
|
||||
|
||||
for (int k = 0; k < num_equation; k++)
|
||||
for (int k = 0; k < num_equations; k++)
|
||||
{
|
||||
GridFunction uk(&fes, u_block.GetBlock(k));
|
||||
GridFunction uk(&fes, sol.GetData() + k * fes.GetNDofs());
|
||||
ostringstream sol_name;
|
||||
sol_name << "vortex-" << k << "-init.gf";
|
||||
sol_name << "euler-" << k << "-init.gf";
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(precision);
|
||||
sol_ofs << uk;
|
||||
}
|
||||
}
|
||||
|
||||
// 7. Set up the nonlinear form corresponding to the DG discretization of the
|
||||
// flux divergence, and assemble the corresponding mass matrix.
|
||||
MixedBilinearForm Aflux(&dfes, &fes);
|
||||
Aflux.AddDomainIntegrator(new TransposeIntegrator(new GradientIntegrator()));
|
||||
Aflux.Assemble();
|
||||
// 6. Set up the nonlinear form with euler flux and numerical flux
|
||||
EulerFlux flux(dim, specific_heat_ratio);
|
||||
RusanovFlux numericalFlux(flux);
|
||||
DGHyperbolicConservationLaws euler(
|
||||
vfes, std::unique_ptr<HyperbolicFormIntegrator>(
|
||||
new HyperbolicFormIntegrator(numericalFlux, IntOrderOffset)),
|
||||
preassembleWeakDiv);
|
||||
|
||||
NonlinearForm A(&vfes);
|
||||
RiemannSolver rsolver;
|
||||
A.AddInteriorFaceIntegrator(new FaceIntegrator(rsolver, dim));
|
||||
|
||||
// 8. Define the time-dependent evolution operator describing the ODE
|
||||
// right-hand side, and perform time-integration (looping over the time
|
||||
// iterations, ti, with a time-step dt).
|
||||
FE_Evolution euler(vfes, A, Aflux.SpMat());
|
||||
|
||||
// Visualize the density
|
||||
// 7. Visualize momentum with its magnitude
|
||||
socketstream sout;
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
int visport = 19916;
|
||||
|
||||
sout.open(vishost, visport);
|
||||
if (!sout)
|
||||
{
|
||||
cout << "Unable to connect to GLVis server at "
|
||||
<< vishost << ':' << visport << endl;
|
||||
visualization = false;
|
||||
cout << "Unable to connect to GLVis server at " << vishost << ':'
|
||||
<< visport << endl;
|
||||
cout << "GLVis visualization disabled.\n";
|
||||
}
|
||||
else
|
||||
{
|
||||
sout.precision(precision);
|
||||
// Plot magnitude of vector-valued momentum
|
||||
sout << "solution\n" << mesh << mom;
|
||||
sout << "window_title 'momentum, t = 0'\n";
|
||||
sout << "view 0 0\n"; // view from top
|
||||
sout << "keys jlm\n"; // turn off perspective and light, show mesh
|
||||
sout << "pause\n";
|
||||
sout << flush;
|
||||
cout << "GLVis visualization paused."
|
||||
@@ -227,54 +221,57 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// Determine the minimum element size.
|
||||
double hmin = 0.0;
|
||||
// 8. Time integration
|
||||
|
||||
// When dt is not specified, use CFL condition.
|
||||
// Compute h_min and initial maximum characteristic speed
|
||||
real_t hmin = infinity();
|
||||
if (cfl > 0)
|
||||
{
|
||||
hmin = mesh.GetElementSize(0, 1);
|
||||
for (int i = 1; i < mesh.GetNE(); i++)
|
||||
for (int i = 0; i < mesh.GetNE(); i++)
|
||||
{
|
||||
hmin = min(mesh.GetElementSize(i, 1), hmin);
|
||||
}
|
||||
// Find a safe dt, using a temporary vector. Calling Mult() computes the
|
||||
// maximum char speed at all quadrature points on all faces (and all
|
||||
// elements with -mf).
|
||||
Vector z(sol.Size());
|
||||
euler.Mult(sol, z);
|
||||
|
||||
real_t max_char_speed = euler.GetMaxCharSpeed();
|
||||
dt = cfl * hmin / max_char_speed / (2 * order + 1);
|
||||
}
|
||||
|
||||
// Start the timer.
|
||||
tic_toc.Clear();
|
||||
tic_toc.Start();
|
||||
|
||||
double t = 0.0;
|
||||
// Init time integration
|
||||
real_t t = 0.0;
|
||||
euler.SetTime(t);
|
||||
ode_solver->Init(euler);
|
||||
|
||||
if (cfl > 0)
|
||||
{
|
||||
// Find a safe dt, using a temporary vector. Calling Mult() computes the
|
||||
// maximum char speed at all quadrature points on all faces.
|
||||
Vector z(A.Width());
|
||||
max_char_speed = 0.;
|
||||
A.Mult(sol, z);
|
||||
dt = cfl * hmin / max_char_speed / (2*order+1);
|
||||
}
|
||||
|
||||
// Integrate in time.
|
||||
bool done = false;
|
||||
for (int ti = 0; !done; )
|
||||
for (int ti = 0; !done;)
|
||||
{
|
||||
double dt_real = min(dt, t_final - t);
|
||||
real_t dt_real = min(dt, t_final - t);
|
||||
|
||||
ode_solver->Step(sol, t, dt_real);
|
||||
if (cfl > 0)
|
||||
if (cfl > 0) // update time step size with CFL
|
||||
{
|
||||
dt = cfl * hmin / max_char_speed / (2*order+1);
|
||||
real_t max_char_speed = euler.GetMaxCharSpeed();
|
||||
dt = cfl * hmin / max_char_speed / (2 * order + 1);
|
||||
}
|
||||
ti++;
|
||||
|
||||
done = (t >= t_final - 1e-8*dt);
|
||||
done = (t >= t_final - 1e-8 * dt);
|
||||
if (done || ti % vis_steps == 0)
|
||||
{
|
||||
cout << "time step: " << ti << ", time: " << t << endl;
|
||||
if (visualization)
|
||||
{
|
||||
sout << "window_title 'momentum, t = " << t << "'\n";
|
||||
sout << "solution\n" << mesh << mom << flush;
|
||||
}
|
||||
}
|
||||
@@ -284,23 +281,28 @@ int main(int argc, char *argv[])
|
||||
cout << " done, " << tic_toc.RealTime() << "s." << endl;
|
||||
|
||||
// 9. Save the final solution. This output can be viewed later using GLVis:
|
||||
// "glvis -m vortex.mesh -g vortex-1-final.gf".
|
||||
for (int k = 0; k < num_equation; k++)
|
||||
// "glvis -m euler-mesh-final.mesh -g euler-1-final.gf" (for x-momentum).
|
||||
{
|
||||
GridFunction uk(&fes, u_block.GetBlock(k));
|
||||
ostringstream sol_name;
|
||||
sol_name << "vortex-" << k << "-final.gf";
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(precision);
|
||||
sol_ofs << uk;
|
||||
ostringstream mesh_name;
|
||||
mesh_name << "euler-mesh-final.mesh";
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(precision);
|
||||
mesh_ofs << mesh;
|
||||
|
||||
for (int k = 0; k < num_equations; k++)
|
||||
{
|
||||
GridFunction uk(&fes, sol.GetData() + k * fes.GetNDofs());
|
||||
ostringstream sol_name;
|
||||
sol_name << "euler-" << k << "-final.gf";
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(precision);
|
||||
sol_ofs << uk;
|
||||
}
|
||||
}
|
||||
|
||||
// 10. Compute the L2 solution error summed for all components.
|
||||
if (t_final == 2.0)
|
||||
{
|
||||
const double error = sol.ComputeLpError(2, u0);
|
||||
cout << "Solution error: " << error << endl;
|
||||
}
|
||||
const real_t error = sol.ComputeLpError(2, u0);
|
||||
cout << "Solution error: " << error << endl;
|
||||
|
||||
// Free the used memory.
|
||||
delete ode_solver;
|
||||
|
||||
+313
-436
@@ -1,490 +1,367 @@
|
||||
// MFEM Example 18 - Serial/Parallel Shared Code
|
||||
// (Implementation of Time-dependent DG Operator)
|
||||
//
|
||||
// This code provide example problems for the Euler equations and implements
|
||||
// the time-dependent DG operator given by the equation:
|
||||
//
|
||||
// (u_t, v)_T - (F(u), ∇ v)_T + <F̂(u, n), [[v]]>_F = 0.
|
||||
//
|
||||
// This operator is designed for explicit time stepping methods. Specifically,
|
||||
// the function DGHyperbolicConservationLaws::Mult implements the following
|
||||
// transformation:
|
||||
//
|
||||
// u ↦ M⁻¹(-DF(u) + NF(u))
|
||||
//
|
||||
// where M is the mass matrix, DF is the weak divergence of flux, and NF is the
|
||||
// interface flux. The inverse of the mass matrix is computed element-wise by
|
||||
// leveraging the block-diagonal structure of the DG mass matrix. Additionally,
|
||||
// the flux-related terms are computed using the HyperbolicFormIntegrator.
|
||||
//
|
||||
// The maximum characteristic speed is determined for each time step. For more
|
||||
// details, refer to the documentation of DGHyperbolicConservationLaws::Mult.
|
||||
//
|
||||
|
||||
#include <functional>
|
||||
#include "mfem.hpp"
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// Problem definition
|
||||
extern int problem;
|
||||
|
||||
// Maximum characteristic speed (updated by integrators)
|
||||
extern double max_char_speed;
|
||||
|
||||
extern const int num_equation;
|
||||
extern const double specific_heat_ratio;
|
||||
extern const double gas_constant;
|
||||
|
||||
// Time-dependent operator for the right-hand side of the ODE representing the
|
||||
// DG weak form.
|
||||
class FE_Evolution : public TimeDependentOperator
|
||||
/// @brief Time dependent DG operator for hyperbolic conservation laws
|
||||
class DGHyperbolicConservationLaws : public TimeDependentOperator
|
||||
{
|
||||
private:
|
||||
const int num_equations; // the number of equations
|
||||
const int dim;
|
||||
|
||||
FiniteElementSpace &vfes;
|
||||
Operator &A;
|
||||
SparseMatrix &Aflux;
|
||||
DenseTensor Me_inv;
|
||||
|
||||
mutable Vector state;
|
||||
mutable DenseMatrix f;
|
||||
mutable DenseTensor flux;
|
||||
FiniteElementSpace &vfes; // vector finite element space
|
||||
// Element integration form. Should contain ComputeFlux
|
||||
std::unique_ptr<HyperbolicFormIntegrator> formIntegrator;
|
||||
// Base Nonlinear Form
|
||||
std::unique_ptr<NonlinearForm> nonlinearForm;
|
||||
// element-wise inverse mass matrix
|
||||
std::vector<DenseMatrix> invmass; // local scalar inverse mass
|
||||
std::vector<DenseMatrix> weakdiv; // local weak divergence (trial space ByDim)
|
||||
// global maximum characteristic speed. Updated by form integrators
|
||||
mutable real_t max_char_speed;
|
||||
// auxiliary variable used in Mult
|
||||
mutable Vector z;
|
||||
|
||||
void GetFlux(const DenseMatrix &state_, DenseTensor &flux_) const;
|
||||
// Compute element-wise inverse mass matrix
|
||||
void ComputeInvMass();
|
||||
// Compute element-wise weak-divergence matrix
|
||||
void ComputeWeakDivergence();
|
||||
|
||||
public:
|
||||
FE_Evolution(FiniteElementSpace &vfes_,
|
||||
Operator &A_, SparseMatrix &Aflux_);
|
||||
/**
|
||||
* @brief Construct a new DGHyperbolicConservationLaws object
|
||||
*
|
||||
* @param vfes_ vector finite element space. Only tested for DG [Pₚ]ⁿ
|
||||
* @param formIntegrator_ integrator (F(u,x), grad v)
|
||||
* @param preassembleWeakDivergence preassemble weak divergence for faster
|
||||
* assembly
|
||||
*/
|
||||
DGHyperbolicConservationLaws(
|
||||
FiniteElementSpace &vfes_,
|
||||
std::unique_ptr<HyperbolicFormIntegrator> formIntegrator_,
|
||||
bool preassembleWeakDivergence=true);
|
||||
/**
|
||||
* @brief Apply nonlinear form to obtain M⁻¹(DIVF + JUMP HAT(F))
|
||||
*
|
||||
* @param x current solution vector
|
||||
* @param y resulting dual vector to be used in an EXPLICIT solver
|
||||
*/
|
||||
void Mult(const Vector &x, Vector &y) const override;
|
||||
// get global maximum characteristic speed to be used in CFL condition
|
||||
// where max_char_speed is updated during Mult.
|
||||
real_t GetMaxCharSpeed() { return max_char_speed; }
|
||||
void Update();
|
||||
|
||||
virtual void Mult(const Vector &x, Vector &y) const;
|
||||
|
||||
virtual ~FE_Evolution() { }
|
||||
};
|
||||
|
||||
// Implements a simple Rusanov flux
|
||||
class RiemannSolver
|
||||
{
|
||||
private:
|
||||
Vector flux1;
|
||||
Vector flux2;
|
||||
//////////////////////////////////////////////////////////////////
|
||||
/// HYPERBOLIC CONSERVATION LAWS IMPLEMENTATION ///
|
||||
//////////////////////////////////////////////////////////////////
|
||||
|
||||
public:
|
||||
RiemannSolver();
|
||||
double Eval(const Vector &state1, const Vector &state2,
|
||||
const Vector &nor, Vector &flux);
|
||||
};
|
||||
|
||||
// Interior face term: <F.n(u),[w]>
|
||||
class FaceIntegrator : public NonlinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
RiemannSolver rsolver;
|
||||
Vector shape1;
|
||||
Vector shape2;
|
||||
Vector funval1;
|
||||
Vector funval2;
|
||||
Vector nor;
|
||||
Vector fluxN;
|
||||
|
||||
public:
|
||||
FaceIntegrator(RiemannSolver &rsolver_, const int dim);
|
||||
|
||||
virtual void AssembleFaceVector(const FiniteElement &el1,
|
||||
const FiniteElement &el2,
|
||||
FaceElementTransformations &Tr,
|
||||
const Vector &elfun, Vector &elvect);
|
||||
};
|
||||
|
||||
// Implementation of class FE_Evolution
|
||||
FE_Evolution::FE_Evolution(FiniteElementSpace &vfes_,
|
||||
Operator &A_, SparseMatrix &Aflux_)
|
||||
: TimeDependentOperator(A_.Height()),
|
||||
dim(vfes_.GetFE(0)->GetDim()),
|
||||
// Implementation of class DGHyperbolicConservationLaws
|
||||
DGHyperbolicConservationLaws::DGHyperbolicConservationLaws(
|
||||
FiniteElementSpace &vfes_,
|
||||
std::unique_ptr<HyperbolicFormIntegrator> formIntegrator_,
|
||||
bool preassembleWeakDivergence)
|
||||
: TimeDependentOperator(vfes_.GetTrueVSize()),
|
||||
num_equations(formIntegrator_->num_equations),
|
||||
dim(vfes_.GetMesh()->SpaceDimension()),
|
||||
vfes(vfes_),
|
||||
A(A_),
|
||||
Aflux(Aflux_),
|
||||
Me_inv(vfes.GetFE(0)->GetDof(), vfes.GetFE(0)->GetDof(), vfes.GetNE()),
|
||||
state(num_equation),
|
||||
f(num_equation, dim),
|
||||
flux(vfes.GetNDofs(), dim, num_equation),
|
||||
z(A.Height())
|
||||
formIntegrator(std::move(formIntegrator_)),
|
||||
z(vfes_.GetTrueVSize())
|
||||
{
|
||||
// Standard local assembly and inversion for energy mass matrices.
|
||||
const int dof = vfes.GetFE(0)->GetDof();
|
||||
DenseMatrix Me(dof);
|
||||
DenseMatrixInverse inv(&Me);
|
||||
MassIntegrator mi;
|
||||
for (int i = 0; i < vfes.GetNE(); i++)
|
||||
ComputeInvMass();
|
||||
#ifndef MFEM_USE_MPI
|
||||
nonlinearForm.reset(new NonlinearForm(&vfes));
|
||||
#else
|
||||
ParFiniteElementSpace *pvfes = dynamic_cast<ParFiniteElementSpace *>(&vfes);
|
||||
if (pvfes)
|
||||
{
|
||||
mi.AssembleElementMatrix(*vfes.GetFE(i), *vfes.GetElementTransformation(i), Me);
|
||||
inv.Factor();
|
||||
inv.GetInverseMatrix(Me_inv(i));
|
||||
nonlinearForm.reset(new ParNonlinearForm(pvfes));
|
||||
}
|
||||
}
|
||||
|
||||
void FE_Evolution::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
// 0. Reset wavespeed computation before operator application.
|
||||
max_char_speed = 0.;
|
||||
|
||||
// 1. Create the vector z with the face terms -<F.n(u), [w]>.
|
||||
A.Mult(x, z);
|
||||
|
||||
// 2. Add the element terms.
|
||||
// i. computing the flux approximately as a grid function by interpolating
|
||||
// at the solution nodes.
|
||||
// ii. multiplying this grid function by a (constant) mixed bilinear form for
|
||||
// each of the num_equation, computing (F(u), grad(w)) for each equation.
|
||||
|
||||
DenseMatrix xmat(x.GetData(), vfes.GetNDofs(), num_equation);
|
||||
GetFlux(xmat, flux);
|
||||
|
||||
for (int k = 0; k < num_equation; k++)
|
||||
{
|
||||
Vector fk(flux(k).GetData(), dim * vfes.GetNDofs());
|
||||
Vector zk(z.GetData() + k * vfes.GetNDofs(), vfes.GetNDofs());
|
||||
Aflux.AddMult(fk, zk);
|
||||
}
|
||||
|
||||
// 3. Multiply element-wise by the inverse mass matrices.
|
||||
Vector zval;
|
||||
Array<int> vdofs;
|
||||
const int dof = vfes.GetFE(0)->GetDof();
|
||||
DenseMatrix zmat, ymat(dof, num_equation);
|
||||
|
||||
for (int i = 0; i < vfes.GetNE(); i++)
|
||||
{
|
||||
// Return the vdofs ordered byNODES
|
||||
vfes.GetElementVDofs(i, vdofs);
|
||||
z.GetSubVector(vdofs, zval);
|
||||
zmat.UseExternalData(zval.GetData(), dof, num_equation);
|
||||
mfem::Mult(Me_inv(i), zmat, ymat);
|
||||
y.SetSubVector(vdofs, ymat.GetData());
|
||||
}
|
||||
}
|
||||
|
||||
// Physicality check (at end)
|
||||
bool StateIsPhysical(const Vector &state, const int dim);
|
||||
|
||||
// Pressure (EOS) computation
|
||||
inline double ComputePressure(const Vector &state, int dim)
|
||||
{
|
||||
const double den = state(0);
|
||||
const Vector den_vel(state.GetData() + 1, dim);
|
||||
const double den_energy = state(1 + dim);
|
||||
|
||||
double den_vel2 = 0;
|
||||
for (int d = 0; d < dim; d++) { den_vel2 += den_vel(d) * den_vel(d); }
|
||||
den_vel2 /= den;
|
||||
|
||||
return (specific_heat_ratio - 1.0) * (den_energy - 0.5 * den_vel2);
|
||||
}
|
||||
|
||||
// Compute the vector flux F(u)
|
||||
void ComputeFlux(const Vector &state, int dim, DenseMatrix &flux)
|
||||
{
|
||||
const double den = state(0);
|
||||
const Vector den_vel(state.GetData() + 1, dim);
|
||||
const double den_energy = state(1 + dim);
|
||||
|
||||
MFEM_ASSERT(StateIsPhysical(state, dim), "");
|
||||
|
||||
const double pres = ComputePressure(state, dim);
|
||||
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
flux(0, d) = den_vel(d);
|
||||
for (int i = 0; i < dim; i++)
|
||||
{
|
||||
flux(1+i, d) = den_vel(i) * den_vel(d) / den;
|
||||
}
|
||||
flux(1+d, d) += pres;
|
||||
}
|
||||
|
||||
const double H = (den_energy + pres) / den;
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
flux(1+dim, d) = den_vel(d) * H;
|
||||
}
|
||||
}
|
||||
|
||||
// Compute the scalar F(u).n
|
||||
void ComputeFluxDotN(const Vector &state, const Vector &nor,
|
||||
Vector &fluxN)
|
||||
{
|
||||
// NOTE: nor in general is not a unit normal
|
||||
const int dim = nor.Size();
|
||||
const double den = state(0);
|
||||
const Vector den_vel(state.GetData() + 1, dim);
|
||||
const double den_energy = state(1 + dim);
|
||||
|
||||
MFEM_ASSERT(StateIsPhysical(state, dim), "");
|
||||
|
||||
const double pres = ComputePressure(state, dim);
|
||||
|
||||
double den_velN = 0;
|
||||
for (int d = 0; d < dim; d++) { den_velN += den_vel(d) * nor(d); }
|
||||
|
||||
fluxN(0) = den_velN;
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
fluxN(1+d) = den_velN * den_vel(d) / den + pres * nor(d);
|
||||
}
|
||||
|
||||
const double H = (den_energy + pres) / den;
|
||||
fluxN(1 + dim) = den_velN * H;
|
||||
}
|
||||
|
||||
// Compute the maximum characteristic speed.
|
||||
inline double ComputeMaxCharSpeed(const Vector &state, const int dim)
|
||||
{
|
||||
const double den = state(0);
|
||||
const Vector den_vel(state.GetData() + 1, dim);
|
||||
|
||||
double den_vel2 = 0;
|
||||
for (int d = 0; d < dim; d++) { den_vel2 += den_vel(d) * den_vel(d); }
|
||||
den_vel2 /= den;
|
||||
|
||||
const double pres = ComputePressure(state, dim);
|
||||
const double sound = sqrt(specific_heat_ratio * pres / den);
|
||||
const double vel = sqrt(den_vel2 / den);
|
||||
|
||||
return vel + sound;
|
||||
}
|
||||
|
||||
// Compute the flux at solution nodes.
|
||||
void FE_Evolution::GetFlux(const DenseMatrix &x_, DenseTensor &flux_) const
|
||||
{
|
||||
const int flux_dof = flux_.SizeI();
|
||||
const int flux_dim = flux_.SizeJ();
|
||||
|
||||
for (int i = 0; i < flux_dof; i++)
|
||||
{
|
||||
for (int k = 0; k < num_equation; k++) { state(k) = x_(i, k); }
|
||||
ComputeFlux(state, flux_dim, f);
|
||||
|
||||
for (int d = 0; d < flux_dim; d++)
|
||||
{
|
||||
for (int k = 0; k < num_equation; k++)
|
||||
{
|
||||
flux_(i, d, k) = f(k, d);
|
||||
}
|
||||
}
|
||||
|
||||
// Update max char speed
|
||||
const double mcs = ComputeMaxCharSpeed(state, flux_dim);
|
||||
if (mcs > max_char_speed) { max_char_speed = mcs; }
|
||||
}
|
||||
}
|
||||
|
||||
// Implementation of class RiemannSolver
|
||||
RiemannSolver::RiemannSolver() :
|
||||
flux1(num_equation),
|
||||
flux2(num_equation) { }
|
||||
|
||||
double RiemannSolver::Eval(const Vector &state1, const Vector &state2,
|
||||
const Vector &nor, Vector &flux)
|
||||
{
|
||||
// NOTE: nor in general is not a unit normal
|
||||
const int dim = nor.Size();
|
||||
|
||||
MFEM_ASSERT(StateIsPhysical(state1, dim), "");
|
||||
MFEM_ASSERT(StateIsPhysical(state2, dim), "");
|
||||
|
||||
const double maxE1 = ComputeMaxCharSpeed(state1, dim);
|
||||
const double maxE2 = ComputeMaxCharSpeed(state2, dim);
|
||||
|
||||
const double maxE = max(maxE1, maxE2);
|
||||
|
||||
ComputeFluxDotN(state1, nor, flux1);
|
||||
ComputeFluxDotN(state2, nor, flux2);
|
||||
|
||||
double normag = 0;
|
||||
for (int i = 0; i < dim; i++)
|
||||
{
|
||||
normag += nor(i) * nor(i);
|
||||
}
|
||||
normag = sqrt(normag);
|
||||
|
||||
for (int i = 0; i < num_equation; i++)
|
||||
{
|
||||
flux(i) = 0.5 * (flux1(i) + flux2(i))
|
||||
- 0.5 * maxE * (state2(i) - state1(i)) * normag;
|
||||
}
|
||||
|
||||
return maxE;
|
||||
}
|
||||
|
||||
// Implementation of class FaceIntegrator
|
||||
FaceIntegrator::FaceIntegrator(RiemannSolver &rsolver_, const int dim) :
|
||||
rsolver(rsolver_),
|
||||
funval1(num_equation),
|
||||
funval2(num_equation),
|
||||
nor(dim),
|
||||
fluxN(num_equation) { }
|
||||
|
||||
void FaceIntegrator::AssembleFaceVector(const FiniteElement &el1,
|
||||
const FiniteElement &el2,
|
||||
FaceElementTransformations &Tr,
|
||||
const Vector &elfun, Vector &elvect)
|
||||
{
|
||||
// Compute the term <F.n(u),[w]> on the interior faces.
|
||||
const int dof1 = el1.GetDof();
|
||||
const int dof2 = el2.GetDof();
|
||||
|
||||
shape1.SetSize(dof1);
|
||||
shape2.SetSize(dof2);
|
||||
|
||||
elvect.SetSize((dof1 + dof2) * num_equation);
|
||||
elvect = 0.0;
|
||||
|
||||
DenseMatrix elfun1_mat(elfun.GetData(), dof1, num_equation);
|
||||
DenseMatrix elfun2_mat(elfun.GetData() + dof1 * num_equation, dof2,
|
||||
num_equation);
|
||||
|
||||
DenseMatrix elvect1_mat(elvect.GetData(), dof1, num_equation);
|
||||
DenseMatrix elvect2_mat(elvect.GetData() + dof1 * num_equation, dof2,
|
||||
num_equation);
|
||||
|
||||
// Integration order calculation from DGTraceIntegrator
|
||||
int intorder;
|
||||
if (Tr.Elem2No >= 0)
|
||||
intorder = (min(Tr.Elem1->OrderW(), Tr.Elem2->OrderW()) +
|
||||
2*max(el1.GetOrder(), el2.GetOrder()));
|
||||
else
|
||||
{
|
||||
intorder = Tr.Elem1->OrderW() + 2*el1.GetOrder();
|
||||
nonlinearForm.reset(new NonlinearForm(&vfes));
|
||||
}
|
||||
if (el1.Space() == FunctionSpace::Pk)
|
||||
#endif
|
||||
if (preassembleWeakDivergence)
|
||||
{
|
||||
intorder++;
|
||||
ComputeWeakDivergence();
|
||||
}
|
||||
const IntegrationRule *ir = &IntRules.Get(Tr.GetGeometryType(), intorder);
|
||||
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
else
|
||||
{
|
||||
const IntegrationPoint &ip = ir->IntPoint(i);
|
||||
nonlinearForm->AddDomainIntegrator(formIntegrator.get());
|
||||
}
|
||||
nonlinearForm->AddInteriorFaceIntegrator(formIntegrator.get());
|
||||
nonlinearForm->UseExternalIntegrators();
|
||||
|
||||
Tr.SetAllIntPoints(&ip); // set face and element int. points
|
||||
}
|
||||
|
||||
// Calculate basis functions on both elements at the face
|
||||
el1.CalcShape(Tr.GetElement1IntPoint(), shape1);
|
||||
el2.CalcShape(Tr.GetElement2IntPoint(), shape2);
|
||||
void DGHyperbolicConservationLaws::ComputeInvMass()
|
||||
{
|
||||
InverseIntegrator inv_mass(new MassIntegrator());
|
||||
|
||||
// Interpolate elfun at the point
|
||||
elfun1_mat.MultTranspose(shape1, funval1);
|
||||
elfun2_mat.MultTranspose(shape2, funval2);
|
||||
|
||||
// Get the normal vector and the flux on the face
|
||||
CalcOrtho(Tr.Jacobian(), nor);
|
||||
const double mcs = rsolver.Eval(funval1, funval2, nor, fluxN);
|
||||
|
||||
// Update max char speed
|
||||
if (mcs > max_char_speed) { max_char_speed = mcs; }
|
||||
|
||||
fluxN *= ip.weight;
|
||||
for (int k = 0; k < num_equation; k++)
|
||||
{
|
||||
for (int s = 0; s < dof1; s++)
|
||||
{
|
||||
elvect1_mat(s, k) -= fluxN(k) * shape1(s);
|
||||
}
|
||||
for (int s = 0; s < dof2; s++)
|
||||
{
|
||||
elvect2_mat(s, k) += fluxN(k) * shape2(s);
|
||||
}
|
||||
}
|
||||
invmass.resize(vfes.GetNE());
|
||||
for (int i=0; i<vfes.GetNE(); i++)
|
||||
{
|
||||
int dof = vfes.GetFE(i)->GetDof();
|
||||
invmass[i].SetSize(dof);
|
||||
inv_mass.AssembleElementMatrix(*vfes.GetFE(i),
|
||||
*vfes.GetElementTransformation(i),
|
||||
invmass[i]);
|
||||
}
|
||||
}
|
||||
|
||||
// Check that the state is physical - enabled in debug mode
|
||||
bool StateIsPhysical(const Vector &state, const int dim)
|
||||
void DGHyperbolicConservationLaws::ComputeWeakDivergence()
|
||||
{
|
||||
const double den = state(0);
|
||||
const Vector den_vel(state.GetData() + 1, dim);
|
||||
const double den_energy = state(1 + dim);
|
||||
TransposeIntegrator weak_div(new GradientIntegrator());
|
||||
DenseMatrix weakdiv_bynodes;
|
||||
|
||||
if (den < 0)
|
||||
weakdiv.resize(vfes.GetNE());
|
||||
for (int i=0; i<vfes.GetNE(); i++)
|
||||
{
|
||||
cout << "Negative density: ";
|
||||
for (int i = 0; i < state.Size(); i++)
|
||||
int dof = vfes.GetFE(i)->GetDof();
|
||||
weakdiv_bynodes.SetSize(dof, dof*dim);
|
||||
weak_div.AssembleElementMatrix2(*vfes.GetFE(i), *vfes.GetFE(i),
|
||||
*vfes.GetElementTransformation(i),
|
||||
weakdiv_bynodes);
|
||||
weakdiv[i].SetSize(dof, dof*dim);
|
||||
// Reorder so that trial space is ByDim.
|
||||
// This makes applying weak divergence to flux value simpler.
|
||||
for (int j=0; j<dof; j++)
|
||||
{
|
||||
cout << state(i) << " ";
|
||||
for (int d=0; d<dim; d++)
|
||||
{
|
||||
weakdiv[i].SetCol(j*dim + d, weakdiv_bynodes.GetColumn(d*dof + j));
|
||||
}
|
||||
}
|
||||
cout << endl;
|
||||
return false;
|
||||
|
||||
}
|
||||
if (den_energy <= 0)
|
||||
}
|
||||
|
||||
|
||||
void DGHyperbolicConservationLaws::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
// 0. Reset wavespeed computation before operator application.
|
||||
formIntegrator->ResetMaxCharSpeed();
|
||||
// 1. Apply Nonlinear form to obtain an auxiliary result
|
||||
// z = - <F̂(u_h,n), [[v]]>_e
|
||||
// If weak-divergence is not preassembled, we also have weak-divergence
|
||||
// z = - <F̂(u_h,n), [[v]]>_e + (F(u_h), ∇v)
|
||||
nonlinearForm->Mult(x, z);
|
||||
if (!weakdiv.empty()) // if weak divergence is pre-assembled
|
||||
{
|
||||
cout << "Negative energy: ";
|
||||
for (int i = 0; i < state.Size(); i++)
|
||||
// Apply weak divergence to F(u_h), and inverse mass to z_loc + weakdiv_loc
|
||||
Vector current_state; // view of current state at a node
|
||||
DenseMatrix current_flux; // flux of current state
|
||||
DenseMatrix flux; // element flux value. Whose column is ordered by dim.
|
||||
DenseMatrix current_xmat; // view of current states in an element, dof x num_eq
|
||||
DenseMatrix current_zmat; // view of element auxiliary result, dof x num_eq
|
||||
DenseMatrix current_ymat; // view of element result, dof x num_eq
|
||||
const FluxFunction &fluxFunction = formIntegrator->GetFluxFunction();
|
||||
Array<int> vdofs;
|
||||
Vector xval, zval;
|
||||
for (int i=0; i<vfes.GetNE(); i++)
|
||||
{
|
||||
cout << state(i) << " ";
|
||||
ElementTransformation* Tr = vfes.GetElementTransformation(i);
|
||||
int dof = vfes.GetFE(i)->GetDof();
|
||||
vfes.GetElementVDofs(i, vdofs);
|
||||
x.GetSubVector(vdofs, xval);
|
||||
current_xmat.UseExternalData(xval.GetData(), dof, num_equations);
|
||||
flux.SetSize(num_equations, dim*dof);
|
||||
for (int j=0; j<dof; j++) // compute flux for all nodes in the element
|
||||
{
|
||||
current_xmat.GetRow(j, current_state);
|
||||
current_flux.UseExternalData(flux.GetData() + num_equations*dim*j,
|
||||
num_equations, dof);
|
||||
fluxFunction.ComputeFlux(current_state, *Tr, current_flux);
|
||||
}
|
||||
// Compute weak-divergence and add it to auxiliary result, z
|
||||
// Recalling that weakdiv is reordered by dim, we can apply
|
||||
// weak-divergence to the transpose of flux.
|
||||
z.GetSubVector(vdofs, zval);
|
||||
current_zmat.UseExternalData(zval.GetData(), dof, num_equations);
|
||||
mfem::AddMult_a_ABt(1.0, weakdiv[i], flux, current_zmat);
|
||||
// Apply inverse mass to auxiliary result to obtain the final result
|
||||
current_ymat.SetSize(dof, num_equations);
|
||||
mfem::Mult(invmass[i], current_zmat, current_ymat);
|
||||
y.SetSubVector(vdofs, current_ymat.GetData());
|
||||
}
|
||||
cout << endl;
|
||||
return false;
|
||||
}
|
||||
|
||||
double den_vel2 = 0;
|
||||
for (int i = 0; i < dim; i++) { den_vel2 += den_vel(i) * den_vel(i); }
|
||||
den_vel2 /= den;
|
||||
|
||||
const double pres = (specific_heat_ratio - 1.0) * (den_energy - 0.5 * den_vel2);
|
||||
|
||||
if (pres <= 0)
|
||||
else
|
||||
{
|
||||
cout << "Negative pressure: " << pres << ", state: ";
|
||||
for (int i = 0; i < state.Size(); i++)
|
||||
// Apply block inverse mass
|
||||
Vector zval; // z_loc, dof*num_eq
|
||||
|
||||
DenseMatrix current_zmat; // view of element auxiliary result, dof x num_eq
|
||||
DenseMatrix current_ymat; // view of element result, dof x num_eq
|
||||
Array<int> vdofs;
|
||||
for (int i=0; i<vfes.GetNE(); i++)
|
||||
{
|
||||
cout << state(i) << " ";
|
||||
int dof = vfes.GetFE(i)->GetDof();
|
||||
vfes.GetElementVDofs(i, vdofs);
|
||||
z.GetSubVector(vdofs, zval);
|
||||
current_zmat.UseExternalData(zval.GetData(), dof, num_equations);
|
||||
current_ymat.SetSize(dof, num_equations);
|
||||
mfem::Mult(invmass[i], current_zmat, current_ymat);
|
||||
y.SetSubVector(vdofs, current_ymat.GetData());
|
||||
}
|
||||
cout << endl;
|
||||
return false;
|
||||
}
|
||||
return true;
|
||||
max_char_speed = formIntegrator->GetMaxCharSpeed();
|
||||
}
|
||||
|
||||
void DGHyperbolicConservationLaws::Update()
|
||||
{
|
||||
nonlinearForm->Update();
|
||||
height = nonlinearForm->Height();
|
||||
width = height;
|
||||
z.SetSize(height);
|
||||
|
||||
ComputeInvMass();
|
||||
if (!weakdiv.empty()) {ComputeWeakDivergence();}
|
||||
}
|
||||
|
||||
std::function<void(const Vector&, Vector&)> GetMovingVortexInit(
|
||||
const real_t radius, const real_t Minf, const real_t beta,
|
||||
const real_t gas_constant, const real_t specific_heat_ratio)
|
||||
{
|
||||
return [specific_heat_ratio,
|
||||
gas_constant, Minf, radius, beta](const Vector &x, Vector &y)
|
||||
{
|
||||
MFEM_ASSERT(x.Size() == 2, "");
|
||||
|
||||
const real_t xc = 0.0, yc = 0.0;
|
||||
|
||||
// Nice units
|
||||
const real_t vel_inf = 1.;
|
||||
const real_t den_inf = 1.;
|
||||
|
||||
// Derive remainder of background state from this and Minf
|
||||
const real_t pres_inf = (den_inf / specific_heat_ratio) *
|
||||
(vel_inf / Minf) * (vel_inf / Minf);
|
||||
const real_t temp_inf = pres_inf / (den_inf * gas_constant);
|
||||
|
||||
real_t r2rad = 0.0;
|
||||
r2rad += (x(0) - xc) * (x(0) - xc);
|
||||
r2rad += (x(1) - yc) * (x(1) - yc);
|
||||
r2rad /= (radius * radius);
|
||||
|
||||
const real_t shrinv1 = 1.0 / (specific_heat_ratio - 1.);
|
||||
|
||||
const real_t velX =
|
||||
vel_inf * (1 - beta * (x(1) - yc) / radius * std::exp(-0.5 * r2rad));
|
||||
const real_t velY =
|
||||
vel_inf * beta * (x(0) - xc) / radius * std::exp(-0.5 * r2rad);
|
||||
const real_t vel2 = velX * velX + velY * velY;
|
||||
|
||||
const real_t specific_heat =
|
||||
gas_constant * specific_heat_ratio * shrinv1;
|
||||
const real_t temp = temp_inf - 0.5 * (vel_inf * beta) *
|
||||
(vel_inf * beta) / specific_heat *
|
||||
std::exp(-r2rad);
|
||||
|
||||
const real_t den = den_inf * std::pow(temp / temp_inf, shrinv1);
|
||||
const real_t pres = den * gas_constant * temp;
|
||||
const real_t energy = shrinv1 * pres / den + 0.5 * vel2;
|
||||
|
||||
y(0) = den;
|
||||
y(1) = den * velX;
|
||||
y(2) = den * velY;
|
||||
y(3) = den * energy;
|
||||
};
|
||||
}
|
||||
|
||||
Mesh EulerMesh(const int problem)
|
||||
{
|
||||
switch (problem)
|
||||
{
|
||||
case 1:
|
||||
case 2:
|
||||
case 3:
|
||||
return Mesh("../data/periodic-square.mesh");
|
||||
break;
|
||||
case 4:
|
||||
return Mesh("../data/periodic-segment.mesh");
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Problem Undefined");
|
||||
}
|
||||
}
|
||||
|
||||
// Initial condition
|
||||
void InitialCondition(const Vector &x, Vector &y)
|
||||
VectorFunctionCoefficient EulerInitialCondition(const int problem,
|
||||
const real_t specific_heat_ratio,
|
||||
const real_t gas_constant)
|
||||
{
|
||||
MFEM_ASSERT(x.Size() == 2, "");
|
||||
|
||||
double radius = 0, Minf = 0, beta = 0;
|
||||
if (problem == 1)
|
||||
switch (problem)
|
||||
{
|
||||
// "Fast vortex"
|
||||
radius = 0.2;
|
||||
Minf = 0.5;
|
||||
beta = 1. / 5.;
|
||||
case 1: // fast moving vortex
|
||||
return VectorFunctionCoefficient(
|
||||
4, GetMovingVortexInit(0.2, 0.5, 1. / 5., gas_constant,
|
||||
specific_heat_ratio));
|
||||
case 2: // slow moving vortex
|
||||
return VectorFunctionCoefficient(
|
||||
4, GetMovingVortexInit(0.2, 0.05, 1. / 50., gas_constant,
|
||||
specific_heat_ratio));
|
||||
case 3: // moving sine wave
|
||||
return VectorFunctionCoefficient(4, [](const Vector &x, Vector &y)
|
||||
{
|
||||
MFEM_ASSERT(x.Size() == 2, "");
|
||||
const real_t density = 1.0 + 0.2 * std::sin(M_PI*(x(0) + x(1)));
|
||||
const real_t velocity_x = 0.7;
|
||||
const real_t velocity_y = 0.3;
|
||||
const real_t pressure = 1.0;
|
||||
const real_t energy =
|
||||
pressure / (1.4 - 1.0) +
|
||||
density * 0.5 * (velocity_x * velocity_x + velocity_y * velocity_y);
|
||||
|
||||
y(0) = density;
|
||||
y(1) = density * velocity_x;
|
||||
y(2) = density * velocity_y;
|
||||
y(3) = energy;
|
||||
});
|
||||
case 4:
|
||||
return VectorFunctionCoefficient(3, [](const Vector &x, Vector &y)
|
||||
{
|
||||
MFEM_ASSERT(x.Size() == 1, "");
|
||||
const real_t density = 1.0 + 0.2 * std::sin(M_PI * 2 * x(0));
|
||||
const real_t velocity_x = 1.0;
|
||||
const real_t pressure = 1.0;
|
||||
const real_t energy =
|
||||
pressure / (1.4 - 1.0) + density * 0.5 * (velocity_x * velocity_x);
|
||||
|
||||
y(0) = density;
|
||||
y(1) = density * velocity_x;
|
||||
y(2) = energy;
|
||||
});
|
||||
default:
|
||||
MFEM_ABORT("Problem Undefined");
|
||||
}
|
||||
else if (problem == 2)
|
||||
{
|
||||
// "Slow vortex"
|
||||
radius = 0.2;
|
||||
Minf = 0.05;
|
||||
beta = 1. / 50.;
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem_error("Cannot recognize problem."
|
||||
"Options are: 1 - fast vortex, 2 - slow vortex");
|
||||
}
|
||||
|
||||
const double xc = 0.0, yc = 0.0;
|
||||
|
||||
// Nice units
|
||||
const double vel_inf = 1.;
|
||||
const double den_inf = 1.;
|
||||
|
||||
// Derive remainder of background state from this and Minf
|
||||
const double pres_inf = (den_inf / specific_heat_ratio) * (vel_inf / Minf) *
|
||||
(vel_inf / Minf);
|
||||
const double temp_inf = pres_inf / (den_inf * gas_constant);
|
||||
|
||||
double r2rad = 0.0;
|
||||
r2rad += (x(0) - xc) * (x(0) - xc);
|
||||
r2rad += (x(1) - yc) * (x(1) - yc);
|
||||
r2rad /= (radius * radius);
|
||||
|
||||
const double shrinv1 = 1.0 / (specific_heat_ratio - 1.);
|
||||
|
||||
const double velX = vel_inf * (1 - beta * (x(1) - yc) / radius * exp(
|
||||
-0.5 * r2rad));
|
||||
const double velY = vel_inf * beta * (x(0) - xc) / radius * exp(-0.5 * r2rad);
|
||||
const double vel2 = velX * velX + velY * velY;
|
||||
|
||||
const double specific_heat = gas_constant * specific_heat_ratio * shrinv1;
|
||||
const double temp = temp_inf - 0.5 * (vel_inf * beta) *
|
||||
(vel_inf * beta) / specific_heat * exp(-r2rad);
|
||||
|
||||
const double den = den_inf * pow(temp/temp_inf, shrinv1);
|
||||
const double pres = den * gas_constant * temp;
|
||||
const double energy = shrinv1 * pres / den + 0.5 * vel2;
|
||||
|
||||
y(0) = den;
|
||||
y(1) = den * velX;
|
||||
y(2) = den * velY;
|
||||
y(3) = den * energy;
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
+168
-181
@@ -1,18 +1,24 @@
|
||||
// MFEM Example 18 - Parallel Version
|
||||
// MFEM Example 18 - Parallel Version
|
||||
//
|
||||
// Compile with: make ex18
|
||||
// Compile with: make ex18p
|
||||
//
|
||||
// Sample runs:
|
||||
//
|
||||
// mpirun -np 4 ex18p -p 1 -rs 2 -rp 1 -o 1 -s 3
|
||||
// mpirun -np 4 ex18p -p 1 -rs 1 -rp 1 -o 3 -s 4
|
||||
// mpirun -np 4 ex18p -p 1 -rs 1 -rp 1 -o 5 -s 6
|
||||
// mpirun -np 4 ex18p -p 2 -rs 1 -rp 1 -o 1 -s 3
|
||||
// mpirun -np 4 ex18p -p 2 -rs 1 -rp 1 -o 3 -s 3
|
||||
// mpirun -np 4 ex18p -p 2 -rs 1 -rp 1 -o 1 -s 3 -mf
|
||||
// mpirun -np 4 ex18p -p 2 -rs 1 -rp 1 -o 3 -s 3 -mf
|
||||
//
|
||||
// Description: This example code solves the compressible Euler system of
|
||||
// equations, a model nonlinear hyperbolic PDE, with a
|
||||
// discontinuous Galerkin (DG) formulation.
|
||||
// discontinuous Galerkin (DG) formulation in parallel.
|
||||
//
|
||||
// (u_t, v)_T - (F(u), ∇ v)_T + <F̂(u,n), [[v]]>_F = 0
|
||||
//
|
||||
// where (⋅,⋅)_T is volume integration, and <⋅,⋅>_F is face
|
||||
// integration, F is the Euler flux function, and F̂ is the
|
||||
// numerical flux.
|
||||
//
|
||||
// Specifically, it solves for an exact solution of the equations
|
||||
// whereby a vortex is transported by a uniform flow. Since all
|
||||
@@ -27,54 +33,54 @@
|
||||
// method. An additional factor can be tuned by passing the --cfl
|
||||
// (or -c shorter) flag.
|
||||
//
|
||||
// The example demonstrates user-defined bilinear and nonlinear
|
||||
// form integrators for systems of equations that are defined with
|
||||
// block vectors, and how these are used with an operator for
|
||||
// explicit time integrators. In this case the system also
|
||||
// involves an external approximate Riemann solver for the DG
|
||||
// interface flux. It also demonstrates how to use GLVis for
|
||||
// in-situ visualization of vector grid functions.
|
||||
// The example demonstrates usage of DGHyperbolicConservationLaws
|
||||
// that wraps NonlinearFormIntegrators containing element and face
|
||||
// integration schemes. In this case the system also involves an
|
||||
// external approximate Riemann solver for the DG interface flux.
|
||||
// By default, weak-divergence is pre-assembled in element-wise
|
||||
// manner, which corresponds to (I_h(F(u_h)), ∇ v). This yields
|
||||
// better performance and similar accuracy for the included test
|
||||
// problems. This can be turned off and use nonlinear assembly
|
||||
// similar to matrix-free assembly when -mf flag is provided.
|
||||
// It also demonstrates how to use GLVis for in-situ visualization
|
||||
// of vector grid function and how to set top-view.
|
||||
//
|
||||
// We recommend viewing examples 9, 14 and 17 before viewing this
|
||||
// example.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <sstream>
|
||||
#include <iostream>
|
||||
|
||||
// Classes FE_Evolution, RiemannSolver, and FaceIntegrator
|
||||
// shared between the serial and parallel version of the example.
|
||||
#include <sstream>
|
||||
#include "ex18.hpp"
|
||||
|
||||
// Choice for the problem setup. See InitialCondition in ex18.hpp.
|
||||
int problem;
|
||||
|
||||
// Equation constant parameters.
|
||||
const int num_equation = 4;
|
||||
const double specific_heat_ratio = 1.4;
|
||||
const double gas_constant = 1.0;
|
||||
|
||||
// Maximum characteristic speed (updated by integrators)
|
||||
double max_char_speed;
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Initialize MPI and HYPRE.
|
||||
// 0. Parallel setup
|
||||
Mpi::Init(argc, argv);
|
||||
const int numProcs = Mpi::WorldSize();
|
||||
const int myRank = Mpi::WorldRank();
|
||||
Hypre::Init();
|
||||
|
||||
// 2. Parse command-line options.
|
||||
problem = 1;
|
||||
const char *mesh_file = "../data/periodic-square.mesh";
|
||||
// 1. Parse command-line options.
|
||||
int problem = 1;
|
||||
const real_t specific_heat_ratio = 1.4;
|
||||
const real_t gas_constant = 1.0;
|
||||
|
||||
string mesh_file = "";
|
||||
int IntOrderOffset = 1;
|
||||
int ser_ref_levels = 0;
|
||||
int par_ref_levels = 1;
|
||||
int order = 3;
|
||||
int ode_solver_type = 4;
|
||||
double t_final = 2.0;
|
||||
double dt = -0.01;
|
||||
double cfl = 0.3;
|
||||
real_t t_final = 2.0;
|
||||
real_t dt = -0.01;
|
||||
real_t cfl = 0.3;
|
||||
bool visualization = true;
|
||||
bool preassembleWeakDiv = true;
|
||||
int vis_steps = 50;
|
||||
|
||||
int precision = 8;
|
||||
@@ -82,22 +88,20 @@ int main(int argc, char *argv[])
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
"Mesh file to use. If not provided, then a periodic square"
|
||||
" mesh will be used.");
|
||||
args.AddOption(&problem, "-p", "--problem",
|
||||
"Problem setup to use. See options in velocity_function().");
|
||||
args.AddOption(&ser_ref_levels, "-rs", "--refine-serial",
|
||||
"Number of times to refine the mesh uniformly before parallel"
|
||||
" partitioning, -1 for auto.");
|
||||
args.AddOption(&par_ref_levels, "-rp", "--refine-parallel",
|
||||
"Number of times to refine the mesh uniformly after parallel"
|
||||
" partitioning.");
|
||||
"Problem setup to use. See EulerInitialCondition().");
|
||||
args.AddOption(&ser_ref_levels, "-rs", "--serial-refine",
|
||||
"Number of times to refine the serial mesh uniformly.");
|
||||
args.AddOption(&par_ref_levels, "-rp", "--parallel-refine",
|
||||
"Number of times to refine the parallel mesh uniformly.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
|
||||
"ODE solver: 1 - Forward Euler,\n\t"
|
||||
" 2 - RK2 SSP, 3 - RK3 SSP, 4 - RK4, 6 - RK6.");
|
||||
args.AddOption(&t_final, "-tf", "--t-final",
|
||||
"Final time; start time is 0.");
|
||||
args.AddOption(&t_final, "-tf", "--t-final", "Final time; start time is 0.");
|
||||
args.AddOption(&dt, "-dt", "--time-step",
|
||||
"Time step. Positive number skips CFL timestep calculation.");
|
||||
args.AddOption(&cfl, "-c", "--cfl-number",
|
||||
@@ -105,25 +109,44 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&preassembleWeakDiv, "-ea", "--element-assembly-divergence",
|
||||
"-mf", "--matrix-free-divergence",
|
||||
"Weak divergence assembly level\n"
|
||||
" ea - Element assembly with interpolated F\n"
|
||||
" mf - Nonlinear assembly in matrix-free manner");
|
||||
args.AddOption(&vis_steps, "-vs", "--visualization-steps",
|
||||
"Visualize every n-th timestep.");
|
||||
args.ParseCheck();
|
||||
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
if (Mpi::Root()) { args.PrintUsage(cout); }
|
||||
return 1;
|
||||
}
|
||||
if (Mpi::Root()) { args.PrintOptions(cout); }
|
||||
|
||||
// 3. Read the mesh from the given mesh file. This example requires a 2D
|
||||
// periodic mesh, such as ../data/periodic-square.mesh.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
// 2. Read the mesh from the given mesh file. When the user does not provide
|
||||
// mesh file, use the default mesh file for the problem.
|
||||
Mesh mesh = mesh_file.empty() ? EulerMesh(problem) : Mesh(mesh_file);
|
||||
const int dim = mesh.Dimension();
|
||||
const int num_equations = dim + 2;
|
||||
|
||||
MFEM_ASSERT(dim == 2, "Need a two-dimensional mesh for the problem definition");
|
||||
// Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ser_ref_levels' of uniform refinement, where 'ser_ref_levels' is a
|
||||
// command-line parameter.
|
||||
for (int lev = 0; lev < ser_ref_levels; lev++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 4. Define the ODE solver used for time integration. Several explicit
|
||||
// Define a parallel mesh by a partitioning of the serial mesh. Refine this
|
||||
// mesh further in parallel to increase the resolution. Once the parallel
|
||||
// mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh pmesh = ParMesh(MPI_COMM_WORLD, mesh);
|
||||
mesh.Clear();
|
||||
|
||||
// Refine the mesh to increase the resolution. In this example we do
|
||||
// 'par_ref_levels' of uniform refinement, where 'par_ref_levels' is a
|
||||
// command-line parameter.
|
||||
for (int lev = 0; lev < par_ref_levels; lev++)
|
||||
{
|
||||
pmesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 3. Define the ODE solver used for time integration. Several explicit
|
||||
// Runge-Kutta methods are available.
|
||||
ODESolver *ode_solver = NULL;
|
||||
switch (ode_solver_type)
|
||||
@@ -134,32 +157,11 @@ int main(int argc, char *argv[])
|
||||
case 4: ode_solver = new RK4Solver; break;
|
||||
case 6: ode_solver = new RK6Solver; break;
|
||||
default:
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
}
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
return 3;
|
||||
}
|
||||
|
||||
// 5. Refine the mesh in serial to increase the resolution. In this example
|
||||
// we do 'ser_ref_levels' of uniform refinement, where 'ser_ref_levels' is
|
||||
// a command-line parameter.
|
||||
for (int lev = 0; lev < ser_ref_levels; lev++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh pmesh(MPI_COMM_WORLD, mesh);
|
||||
mesh.Clear();
|
||||
for (int lev = 0; lev < par_ref_levels; lev++)
|
||||
{
|
||||
pmesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 7. Define the discontinuous DG finite element space of the given
|
||||
// 4. Define the discontinuous DG finite element space of the given
|
||||
// polynomial order on the refined mesh.
|
||||
DG_FECollection fec(order, dim);
|
||||
// Finite element space for a scalar (thermodynamic quantity)
|
||||
@@ -167,7 +169,7 @@ int main(int argc, char *argv[])
|
||||
// Finite element space for a mesh-dim vector quantity (momentum)
|
||||
ParFiniteElementSpace dfes(&pmesh, &fec, dim, Ordering::byNODES);
|
||||
// Finite element space for all variables together (total thermodynamic state)
|
||||
ParFiniteElementSpace vfes(&pmesh, &fec, num_equation, Ordering::byNODES);
|
||||
ParFiniteElementSpace vfes(&pmesh, &fec, num_equations, Ordering::byNODES);
|
||||
|
||||
// This example depends on this ordering of the space.
|
||||
MFEM_ASSERT(fes.GetOrdering() == Ordering::byNODES, "");
|
||||
@@ -178,87 +180,72 @@ int main(int argc, char *argv[])
|
||||
cout << "Number of unknowns: " << glob_size << endl;
|
||||
}
|
||||
|
||||
// 8. Define the initial conditions, save the corresponding mesh and grid
|
||||
// functions to a file. This can be opened with GLVis with the -gc option.
|
||||
|
||||
// The solution u has components {density, x-momentum, y-momentum, energy}.
|
||||
// These are stored contiguously in the BlockVector u_block.
|
||||
Array<int> offsets(num_equation + 1);
|
||||
for (int k = 0; k <= num_equation; k++) { offsets[k] = k * vfes.GetNDofs(); }
|
||||
BlockVector u_block(offsets);
|
||||
|
||||
// Momentum grid function on dfes for visualization.
|
||||
ParGridFunction mom(&dfes, u_block.GetData() + offsets[1]);
|
||||
// 5. Define the initial conditions, save the corresponding mesh and grid
|
||||
// functions to files. These can be opened with GLVis using:
|
||||
// "glvis -np 4 -m euler-mesh -g euler-1-init" (for x-momentum).
|
||||
|
||||
// Initialize the state.
|
||||
VectorFunctionCoefficient u0(num_equation, InitialCondition);
|
||||
ParGridFunction sol(&vfes, u_block.GetData());
|
||||
VectorFunctionCoefficient u0 = EulerInitialCondition(problem,
|
||||
specific_heat_ratio,
|
||||
gas_constant);
|
||||
ParGridFunction sol(&vfes);
|
||||
sol.ProjectCoefficient(u0);
|
||||
|
||||
ParGridFunction mom(&dfes, sol.GetData() + fes.GetNDofs());
|
||||
// Output the initial solution.
|
||||
{
|
||||
ostringstream mesh_name;
|
||||
mesh_name << "vortex-mesh." << setfill('0')
|
||||
<< setw(6) << Mpi::WorldRank();
|
||||
mesh_name << "euler-mesh." << setfill('0') << setw(6) << Mpi::WorldRank();
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(precision);
|
||||
mesh_ofs << pmesh;
|
||||
|
||||
for (int k = 0; k < num_equation; k++)
|
||||
for (int k = 0; k < num_equations; k++)
|
||||
{
|
||||
ParGridFunction uk(&fes, u_block.GetBlock(k));
|
||||
ParGridFunction uk(&fes, sol.GetData() + k * fes.GetNDofs());
|
||||
ostringstream sol_name;
|
||||
sol_name << "vortex-" << k << "-init."
|
||||
<< setfill('0') << setw(6) << Mpi::WorldRank();
|
||||
sol_name << "euler-" << k << "-init." << setfill('0') << setw(6)
|
||||
<< Mpi::WorldRank();
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(precision);
|
||||
sol_ofs << uk;
|
||||
}
|
||||
}
|
||||
|
||||
// 9. Set up the nonlinear form corresponding to the DG discretization of the
|
||||
// flux divergence, and assemble the corresponding mass matrix.
|
||||
MixedBilinearForm Aflux(&dfes, &fes);
|
||||
Aflux.AddDomainIntegrator(new TransposeIntegrator(new GradientIntegrator()));
|
||||
Aflux.Assemble();
|
||||
// 6. Set up the nonlinear form with euler flux and numerical flux
|
||||
EulerFlux flux(dim, specific_heat_ratio);
|
||||
RusanovFlux numericalFlux(flux);
|
||||
DGHyperbolicConservationLaws euler(
|
||||
vfes, std::unique_ptr<HyperbolicFormIntegrator>(
|
||||
new HyperbolicFormIntegrator(numericalFlux, IntOrderOffset)),
|
||||
preassembleWeakDiv);
|
||||
|
||||
ParNonlinearForm A(&vfes);
|
||||
RiemannSolver rsolver;
|
||||
A.AddInteriorFaceIntegrator(new FaceIntegrator(rsolver, dim));
|
||||
|
||||
// 10. Define the time-dependent evolution operator describing the ODE
|
||||
// right-hand side, and perform time-integration (looping over the time
|
||||
// iterations, ti, with a time-step dt).
|
||||
FE_Evolution euler(vfes, A, Aflux.SpMat());
|
||||
|
||||
// Visualize the density
|
||||
// 7. Visualize momentum with its magnitude
|
||||
socketstream sout;
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
int visport = 19916;
|
||||
|
||||
MPI_Barrier(pmesh.GetComm());
|
||||
sout.open(vishost, visport);
|
||||
if (!sout)
|
||||
{
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "Unable to connect to GLVis server at "
|
||||
<< vishost << ':' << visport << endl;
|
||||
}
|
||||
visualization = false;
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "Unable to connect to GLVis server at " << vishost << ':'
|
||||
<< visport << endl;
|
||||
cout << "GLVis visualization disabled.\n";
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
sout << "parallel " << Mpi::WorldSize()
|
||||
<< " " << Mpi::WorldRank() << "\n";
|
||||
sout.precision(precision);
|
||||
// Plot magnitude of vector-valued momentum
|
||||
sout << "parallel " << numProcs << " " << myRank << "\n";
|
||||
sout << "solution\n" << pmesh << mom;
|
||||
sout << "window_title 'momentum, t = 0'\n";
|
||||
sout << "view 0 0\n"; // view from top
|
||||
sout << "keys jlm\n"; // turn off perspective and light, show mesh
|
||||
sout << "pause\n";
|
||||
sout << flush;
|
||||
if (Mpi::Root())
|
||||
@@ -266,68 +253,63 @@ int main(int argc, char *argv[])
|
||||
cout << "GLVis visualization paused."
|
||||
<< " Press space (in the GLVis window) to resume it.\n";
|
||||
}
|
||||
MPI_Barrier(pmesh.GetComm());
|
||||
}
|
||||
}
|
||||
|
||||
// Determine the minimum element size.
|
||||
double hmin;
|
||||
// 8. Time integration
|
||||
|
||||
// When dt is not specified, use CFL condition.
|
||||
// Compute h_min and initial maximum characteristic speed
|
||||
real_t hmin = infinity();
|
||||
if (cfl > 0)
|
||||
{
|
||||
double my_hmin = pmesh.GetElementSize(0, 1);
|
||||
for (int i = 1; i < pmesh.GetNE(); i++)
|
||||
for (int i = 0; i < pmesh.GetNE(); i++)
|
||||
{
|
||||
my_hmin = min(pmesh.GetElementSize(i, 1), my_hmin);
|
||||
hmin = min(pmesh.GetElementSize(i, 1), hmin);
|
||||
}
|
||||
// Reduce to find the global minimum element size
|
||||
MPI_Allreduce(&my_hmin, &hmin, 1, MPI_DOUBLE, MPI_MIN, pmesh.GetComm());
|
||||
MPI_Allreduce(MPI_IN_PLACE, &hmin, 1, MPITypeMap<real_t>::mpi_type, MPI_MIN,
|
||||
pmesh.GetComm());
|
||||
// Find a safe dt, using a temporary vector. Calling Mult() computes the
|
||||
// maximum char speed at all quadrature points on all faces (and all
|
||||
// elements with -mf).
|
||||
Vector z(sol.Size());
|
||||
euler.Mult(sol, z);
|
||||
|
||||
real_t max_char_speed = euler.GetMaxCharSpeed();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &max_char_speed, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_MAX,
|
||||
pmesh.GetComm());
|
||||
dt = cfl * hmin / max_char_speed / (2 * order + 1);
|
||||
}
|
||||
|
||||
// Start the timer.
|
||||
tic_toc.Clear();
|
||||
tic_toc.Start();
|
||||
|
||||
double t = 0.0;
|
||||
// Init time integration
|
||||
real_t t = 0.0;
|
||||
euler.SetTime(t);
|
||||
ode_solver->Init(euler);
|
||||
|
||||
if (cfl > 0)
|
||||
{
|
||||
// Find a safe dt, using a temporary vector. Calling Mult() computes the
|
||||
// maximum char speed at all quadrature points on all faces.
|
||||
max_char_speed = 0.;
|
||||
Vector z(sol.Size());
|
||||
A.Mult(sol, z);
|
||||
// Reduce to find the global maximum wave speed
|
||||
{
|
||||
double all_max_char_speed;
|
||||
MPI_Allreduce(&max_char_speed, &all_max_char_speed,
|
||||
1, MPI_DOUBLE, MPI_MAX, pmesh.GetComm());
|
||||
max_char_speed = all_max_char_speed;
|
||||
}
|
||||
dt = cfl * hmin / max_char_speed / (2*order+1);
|
||||
}
|
||||
|
||||
// Integrate in time.
|
||||
bool done = false;
|
||||
for (int ti = 0; !done; )
|
||||
for (int ti = 0; !done;)
|
||||
{
|
||||
double dt_real = min(dt, t_final - t);
|
||||
real_t dt_real = min(dt, t_final - t);
|
||||
|
||||
ode_solver->Step(sol, t, dt_real);
|
||||
if (cfl > 0)
|
||||
if (cfl > 0) // update time step size with CFL
|
||||
{
|
||||
// Reduce to find the global maximum wave speed
|
||||
{
|
||||
double all_max_char_speed;
|
||||
MPI_Allreduce(&max_char_speed, &all_max_char_speed,
|
||||
1, MPI_DOUBLE, MPI_MAX, pmesh.GetComm());
|
||||
max_char_speed = all_max_char_speed;
|
||||
}
|
||||
dt = cfl * hmin / max_char_speed / (2*order+1);
|
||||
real_t max_char_speed = euler.GetMaxCharSpeed();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &max_char_speed, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_MAX,
|
||||
pmesh.GetComm());
|
||||
dt = cfl * hmin / max_char_speed / (2 * order + 1);
|
||||
}
|
||||
ti++;
|
||||
|
||||
done = (t >= t_final - 1e-8*dt);
|
||||
done = (t >= t_final - 1e-8 * dt);
|
||||
if (done || ti % vis_steps == 0)
|
||||
{
|
||||
if (Mpi::Root())
|
||||
@@ -336,9 +318,8 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
if (visualization)
|
||||
{
|
||||
MPI_Barrier(pmesh.GetComm());
|
||||
sout << "parallel " << Mpi::WorldSize()
|
||||
<< " " << Mpi::WorldRank() << "\n";
|
||||
sout << "window_title 'momentum, t = " << t << "'\n";
|
||||
sout << "parallel " << numProcs << " " << myRank << "\n";
|
||||
sout << "solution\n" << pmesh << mom << flush;
|
||||
}
|
||||
}
|
||||
@@ -350,27 +331,33 @@ int main(int argc, char *argv[])
|
||||
cout << " done, " << tic_toc.RealTime() << "s." << endl;
|
||||
}
|
||||
|
||||
// 11. Save the final solution. This output can be viewed later using GLVis:
|
||||
// "glvis -np 4 -m vortex-mesh -g vortex-1-final".
|
||||
for (int k = 0; k < num_equation; k++)
|
||||
// 9. Save the final solution. This output can be viewed later using GLVis:
|
||||
// "glvis -np 4 -m euler-mesh-final -g euler-1-final" (for x-momentum).
|
||||
{
|
||||
ParGridFunction uk(&fes, u_block.GetBlock(k));
|
||||
ostringstream sol_name;
|
||||
sol_name << "vortex-" << k << "-final."
|
||||
<< setfill('0') << setw(6) << Mpi::WorldRank();
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(precision);
|
||||
sol_ofs << uk;
|
||||
ostringstream mesh_name;
|
||||
mesh_name << "euler-mesh-final." << setfill('0') << setw(6)
|
||||
<< Mpi::WorldRank();
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(precision);
|
||||
mesh_ofs << pmesh;
|
||||
|
||||
for (int k = 0; k < num_equations; k++)
|
||||
{
|
||||
ParGridFunction uk(&fes, sol.GetData() + k * fes.GetNDofs());
|
||||
ostringstream sol_name;
|
||||
sol_name << "euler-" << k << "-final." << setfill('0') << setw(6)
|
||||
<< Mpi::WorldRank();
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(precision);
|
||||
sol_ofs << uk;
|
||||
}
|
||||
}
|
||||
|
||||
// 12. Compute the L2 solution error summed for all components.
|
||||
if (t_final == 2.0)
|
||||
// 10. Compute the L2 solution error summed for all components.
|
||||
const real_t error = sol.ComputeLpError(2, u0);
|
||||
if (Mpi::Root())
|
||||
{
|
||||
const double error = sol.ComputeLpError(2, u0);
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "Solution error: " << error << endl;
|
||||
}
|
||||
cout << "Solution error: " << error << endl;
|
||||
}
|
||||
|
||||
// Free the used memory.
|
||||
|
||||
+10
-10
@@ -48,15 +48,15 @@ public:
|
||||
print_level = print_lvl;
|
||||
}
|
||||
|
||||
virtual void MonitorResidual(int it, double norm, const Vector &r, bool final);
|
||||
virtual void MonitorResidual(int it, real_t norm, const Vector &r, bool final);
|
||||
|
||||
private:
|
||||
const std::string prefix;
|
||||
int print_level;
|
||||
mutable double norm0;
|
||||
mutable real_t norm0;
|
||||
};
|
||||
|
||||
void GeneralResidualMonitor::MonitorResidual(int it, double norm,
|
||||
void GeneralResidualMonitor::MonitorResidual(int it, real_t norm,
|
||||
const Vector &r, bool final)
|
||||
{
|
||||
if (print_level == 1 || (print_level == 3 && (final || it == 0)))
|
||||
@@ -103,7 +103,7 @@ protected:
|
||||
BlockOperator *jacobian;
|
||||
|
||||
// Scaling factor for the pressure mass matrix in the block preconditioner
|
||||
double gamma;
|
||||
real_t gamma;
|
||||
|
||||
// Objects for the block preconditioner application
|
||||
SparseMatrix *pressure_mass;
|
||||
@@ -157,7 +157,7 @@ protected:
|
||||
|
||||
public:
|
||||
RubberOperator(Array<FiniteElementSpace *> &fes, Array<Array<int> *>&ess_bdr,
|
||||
Array<int> &block_trueOffsets, double rel_tol, double abs_tol,
|
||||
Array<int> &block_trueOffsets, real_t rel_tol, real_t abs_tol,
|
||||
int iter, Coefficient &mu);
|
||||
|
||||
// Required to use the native newton solver
|
||||
@@ -187,10 +187,10 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 0;
|
||||
int order = 2;
|
||||
bool visualization = true;
|
||||
double newton_rel_tol = 1e-4;
|
||||
double newton_abs_tol = 1e-6;
|
||||
real_t newton_rel_tol = 1e-4;
|
||||
real_t newton_abs_tol = 1e-6;
|
||||
int newton_iter = 500;
|
||||
double mu = 1.0;
|
||||
real_t mu = 1.0;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -449,8 +449,8 @@ JacobianPreconditioner::~JacobianPreconditioner()
|
||||
RubberOperator::RubberOperator(Array<FiniteElementSpace *> &fes,
|
||||
Array<Array<int> *> &ess_bdr,
|
||||
Array<int> &offsets,
|
||||
double rel_tol,
|
||||
double abs_tol,
|
||||
real_t rel_tol,
|
||||
real_t abs_tol,
|
||||
int iter,
|
||||
Coefficient &c_mu)
|
||||
: Operator(fes[0]->GetTrueVSize() + fes[1]->GetTrueVSize()),
|
||||
|
||||
+11
-11
@@ -62,15 +62,15 @@ public:
|
||||
#endif
|
||||
}
|
||||
|
||||
virtual void MonitorResidual(int it, double norm, const Vector &r, bool final);
|
||||
virtual void MonitorResidual(int it, real_t norm, const Vector &r, bool final);
|
||||
|
||||
private:
|
||||
const std::string prefix;
|
||||
int print_level;
|
||||
mutable double norm0;
|
||||
mutable real_t norm0;
|
||||
};
|
||||
|
||||
void GeneralResidualMonitor::MonitorResidual(int it, double norm,
|
||||
void GeneralResidualMonitor::MonitorResidual(int it, real_t norm,
|
||||
const Vector &r, bool final)
|
||||
{
|
||||
if (print_level == 1 || (print_level == 3 && (final || it == 0)))
|
||||
@@ -117,7 +117,7 @@ protected:
|
||||
BlockOperator *jacobian;
|
||||
|
||||
// Scaling factor for the pressure mass matrix in the block preconditioner
|
||||
double gamma;
|
||||
real_t gamma;
|
||||
|
||||
// Objects for the block preconditioner application
|
||||
Operator *pressure_mass;
|
||||
@@ -171,7 +171,7 @@ protected:
|
||||
|
||||
public:
|
||||
RubberOperator(Array<ParFiniteElementSpace *> &fes, Array<Array<int> *>&ess_bdr,
|
||||
Array<int> &block_trueOffsets, double rel_tol, double abs_tol,
|
||||
Array<int> &block_trueOffsets, real_t rel_tol, real_t abs_tol,
|
||||
int iter, Coefficient &mu);
|
||||
|
||||
// Required to use the native newton solver
|
||||
@@ -200,7 +200,7 @@ int main(int argc, char *argv[])
|
||||
#ifdef HYPRE_USING_GPU
|
||||
cout << "\nAs of mfem-4.3 and hypre-2.22.0 (July 2021) this example\n"
|
||||
<< "is NOT supported with the GPU version of hypre.\n\n";
|
||||
return 242;
|
||||
return MFEM_SKIP_RETURN_VALUE;
|
||||
#endif
|
||||
|
||||
// 1. Initialize MPI and HYPRE.
|
||||
@@ -214,10 +214,10 @@ int main(int argc, char *argv[])
|
||||
int par_ref_levels = 0;
|
||||
int order = 2;
|
||||
bool visualization = true;
|
||||
double newton_rel_tol = 1e-4;
|
||||
double newton_abs_tol = 1e-6;
|
||||
real_t newton_rel_tol = 1e-4;
|
||||
real_t newton_abs_tol = 1e-6;
|
||||
int newton_iter = 500;
|
||||
double mu = 1.0;
|
||||
real_t mu = 1.0;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -524,8 +524,8 @@ JacobianPreconditioner::~JacobianPreconditioner()
|
||||
RubberOperator::RubberOperator(Array<ParFiniteElementSpace *> &fes,
|
||||
Array<Array<int> *> &ess_bdr,
|
||||
Array<int> &trueOffsets,
|
||||
double rel_tol,
|
||||
double abs_tol,
|
||||
real_t rel_tol,
|
||||
real_t abs_tol,
|
||||
int iter,
|
||||
Coefficient &c_mu)
|
||||
: Operator(fes[0]->TrueVSize() + fes[1]->TrueVSize()),
|
||||
|
||||
+10
-10
@@ -69,11 +69,11 @@ using namespace mfem;
|
||||
|
||||
// Constants used in the Hamiltonian
|
||||
static int prob_ = 0;
|
||||
static double m_ = 1.0;
|
||||
static double k_ = 1.0;
|
||||
static real_t m_ = 1.0;
|
||||
static real_t k_ = 1.0;
|
||||
|
||||
// Hamiltonian functional, see below for implementation
|
||||
double hamiltonian(double q, double p, double t);
|
||||
real_t hamiltonian(real_t q, real_t p, real_t t);
|
||||
|
||||
class GradT : public Operator
|
||||
{
|
||||
@@ -94,7 +94,7 @@ int main(int argc, char *argv[])
|
||||
// 1. Parse command-line options.
|
||||
int order = 1;
|
||||
int nsteps = 100;
|
||||
double dt = 0.1;
|
||||
real_t dt = 0.1;
|
||||
bool visualization = true;
|
||||
bool gnuplot = false;
|
||||
|
||||
@@ -136,7 +136,7 @@ int main(int argc, char *argv[])
|
||||
siaSolver.Init(P,F);
|
||||
|
||||
// 3. Set the initial conditions
|
||||
double t = 0.0;
|
||||
real_t t = 0.0;
|
||||
Vector q(1), p(1);
|
||||
Vector e(nsteps+1);
|
||||
q(0) = 0.0;
|
||||
@@ -160,7 +160,7 @@ int main(int argc, char *argv[])
|
||||
Vector x1(3); x1 = 0.0;
|
||||
|
||||
// 6. Perform time-stepping
|
||||
double e_mean = 0.0;
|
||||
real_t e_mean = 0.0;
|
||||
|
||||
for (int i = 0; i < nsteps; i++)
|
||||
{
|
||||
@@ -210,13 +210,13 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 7. Compute and display mean and standard deviation of the energy
|
||||
e_mean /= (nsteps + 1);
|
||||
double e_var = 0.0;
|
||||
real_t e_var = 0.0;
|
||||
for (int i=0; i<=nsteps; i++)
|
||||
{
|
||||
e_var += pow(e[i] - e_mean, 2);
|
||||
}
|
||||
e_var /= (nsteps + 1);
|
||||
double e_sd = sqrt(e_var);
|
||||
real_t e_sd = sqrt(e_var);
|
||||
cout << endl << "Mean and standard deviation of the energy" << endl;
|
||||
cout << e_mean << "\t" << e_sd << endl;
|
||||
|
||||
@@ -256,9 +256,9 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
double hamiltonian(double q, double p, double t)
|
||||
real_t hamiltonian(real_t q, real_t p, real_t t)
|
||||
{
|
||||
double h = 1.0 - 0.5 / m_ + 0.5 * p * p / m_;
|
||||
real_t h = 1.0 - 0.5 / m_ + 0.5 * p * p / m_;
|
||||
switch (prob_)
|
||||
{
|
||||
case 1:
|
||||
|
||||
+16
-15
@@ -74,11 +74,11 @@ using namespace mfem;
|
||||
|
||||
// Constants used in the Hamiltonian
|
||||
static int prob_ = 0;
|
||||
static double m_ = 1.0;
|
||||
static double k_ = 1.0;
|
||||
static real_t m_ = 1.0;
|
||||
static real_t k_ = 1.0;
|
||||
|
||||
// Hamiltonian functional, see below for implementation
|
||||
double hamiltonian(double q, double p, double t);
|
||||
real_t hamiltonian(real_t q, real_t p, real_t t);
|
||||
|
||||
class GradT : public Operator
|
||||
{
|
||||
@@ -106,7 +106,7 @@ int main(int argc, char *argv[])
|
||||
// 2. Parse command-line options.
|
||||
int order = 1;
|
||||
int nsteps = 100;
|
||||
double dt = 0.1;
|
||||
real_t dt = 0.1;
|
||||
bool visualization = true;
|
||||
bool gnuplot = false;
|
||||
|
||||
@@ -154,11 +154,11 @@ int main(int argc, char *argv[])
|
||||
siaSolver.Init(P,F);
|
||||
|
||||
// 4. Set the initial conditions
|
||||
double t = 0.0;
|
||||
real_t t = 0.0;
|
||||
Vector q(1), p(1);
|
||||
Vector e(nsteps+1);
|
||||
q(0) = sin(2.0*M_PI*(double)myid/num_procs);
|
||||
p(0) = cos(2.0*M_PI*(double)myid/num_procs);
|
||||
q(0) = sin(2.0*M_PI*(real_t)myid/num_procs);
|
||||
p(0) = cos(2.0*M_PI*(real_t)myid/num_procs);
|
||||
|
||||
// 5. Prepare GnuPlot output file if needed
|
||||
ostringstream oss;
|
||||
@@ -181,7 +181,7 @@ int main(int argc, char *argv[])
|
||||
Vector x1(3); x1 = 0.0;
|
||||
|
||||
// 7. Perform time-stepping
|
||||
double e_mean = 0.0;
|
||||
real_t e_mean = 0.0;
|
||||
|
||||
for (int i = 0; i < nsteps; i++)
|
||||
{
|
||||
@@ -238,20 +238,21 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 8. Compute and display mean and standard deviation of the energy
|
||||
e_mean /= (nsteps + 1);
|
||||
double e_var = 0.0;
|
||||
real_t e_var = 0.0;
|
||||
for (int i = 0; i <= nsteps; i++)
|
||||
{
|
||||
e_var += pow(e[i] - e_mean, 2);
|
||||
}
|
||||
e_var /= (nsteps + 1);
|
||||
double e_sd = sqrt(e_var);
|
||||
real_t e_sd = sqrt(e_var);
|
||||
|
||||
double e_loc_stats[2];
|
||||
double *e_stats = (myid == 0) ? new double[2 * num_procs] : (double*)NULL;
|
||||
real_t e_loc_stats[2];
|
||||
real_t *e_stats = (myid == 0) ? new real_t[2 * num_procs] : (real_t*)NULL;
|
||||
|
||||
e_loc_stats[0] = e_mean;
|
||||
e_loc_stats[1] = e_sd;
|
||||
MPI_Gather(e_loc_stats, 2, MPI_DOUBLE, e_stats, 2, MPI_DOUBLE, 0, comm);
|
||||
MPI_Gather(e_loc_stats, 2, MPITypeMap<real_t>::mpi_type, e_stats, 2,
|
||||
MPITypeMap<real_t>::mpi_type, 0, comm);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
@@ -324,9 +325,9 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
double hamiltonian(double q, double p, double t)
|
||||
real_t hamiltonian(real_t q, real_t p, real_t t)
|
||||
{
|
||||
double h = 1.0 - 0.5 / m_ + 0.5 * p * p / m_;
|
||||
real_t h = 1.0 - 0.5 / m_ + 0.5 * p * p / m_;
|
||||
switch (prob_)
|
||||
{
|
||||
case 1:
|
||||
|
||||
+18
-18
@@ -57,13 +57,13 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
static double mu_ = 1.0;
|
||||
static double epsilon_ = 1.0;
|
||||
static double sigma_ = 20.0;
|
||||
static double omega_ = 10.0;
|
||||
static real_t mu_ = 1.0;
|
||||
static real_t epsilon_ = 1.0;
|
||||
static real_t sigma_ = 20.0;
|
||||
static real_t omega_ = 10.0;
|
||||
|
||||
double u0_real_exact(const Vector &);
|
||||
double u0_imag_exact(const Vector &);
|
||||
real_t u0_real_exact(const Vector &);
|
||||
real_t u0_imag_exact(const Vector &);
|
||||
|
||||
void u1_real_exact(const Vector &, Vector &);
|
||||
void u1_imag_exact(const Vector &, Vector &);
|
||||
@@ -80,8 +80,8 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 0;
|
||||
int order = 1;
|
||||
int prob = 0;
|
||||
double freq = -1.0;
|
||||
double a_coef = 0.0;
|
||||
real_t freq = -1.0;
|
||||
real_t a_coef = 0.0;
|
||||
bool visualization = 1;
|
||||
bool herm_conv = true;
|
||||
bool exact_sol = true;
|
||||
@@ -412,7 +412,7 @@ int main(int argc, char *argv[])
|
||||
break; // This should be unreachable
|
||||
}
|
||||
}
|
||||
double s = (prob != 1) ? 1.0 : -1.0;
|
||||
real_t s = (prob != 1) ? 1.0 : -1.0;
|
||||
pc_i = new ScaledOperator(pc_r,
|
||||
(conv == ComplexOperator::HERMITIAN) ?
|
||||
s:-s);
|
||||
@@ -436,8 +436,8 @@ int main(int argc, char *argv[])
|
||||
|
||||
if (exact_sol)
|
||||
{
|
||||
double err_r = -1.0;
|
||||
double err_i = -1.0;
|
||||
real_t err_r = -1.0;
|
||||
real_t err_i = -1.0;
|
||||
|
||||
switch (prob)
|
||||
{
|
||||
@@ -524,7 +524,7 @@ int main(int argc, char *argv[])
|
||||
int i = 0;
|
||||
while (sol_sock)
|
||||
{
|
||||
double t = (double)(i % num_frames) / num_frames;
|
||||
real_t t = (real_t)(i % num_frames) / num_frames;
|
||||
ostringstream oss;
|
||||
oss << "Harmonic Solution (t = " << t << " T)";
|
||||
|
||||
@@ -555,21 +555,21 @@ bool check_for_inline_mesh(const char * mesh_file)
|
||||
return s0 == "inline-";
|
||||
}
|
||||
|
||||
complex<double> u0_exact(const Vector &x)
|
||||
complex<real_t> u0_exact(const Vector &x)
|
||||
{
|
||||
int dim = x.Size();
|
||||
complex<double> i(0.0, 1.0);
|
||||
complex<double> alpha = (epsilon_ * omega_ - i * sigma_);
|
||||
complex<double> kappa = std::sqrt(mu_ * omega_* alpha);
|
||||
complex<real_t> i(0.0, 1.0);
|
||||
complex<real_t> alpha = (epsilon_ * omega_ - i * sigma_);
|
||||
complex<real_t> kappa = std::sqrt(mu_ * omega_* alpha);
|
||||
return std::exp(-i * kappa * x[dim - 1]);
|
||||
}
|
||||
|
||||
double u0_real_exact(const Vector &x)
|
||||
real_t u0_real_exact(const Vector &x)
|
||||
{
|
||||
return u0_exact(x).real();
|
||||
}
|
||||
|
||||
double u0_imag_exact(const Vector &x)
|
||||
real_t u0_imag_exact(const Vector &x)
|
||||
{
|
||||
return u0_exact(x).imag();
|
||||
}
|
||||
|
||||
+17
-17
@@ -57,13 +57,13 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
static double mu_ = 1.0;
|
||||
static double epsilon_ = 1.0;
|
||||
static double sigma_ = 20.0;
|
||||
static double omega_ = 10.0;
|
||||
static real_t mu_ = 1.0;
|
||||
static real_t epsilon_ = 1.0;
|
||||
static real_t sigma_ = 20.0;
|
||||
static real_t omega_ = 10.0;
|
||||
|
||||
double u0_real_exact(const Vector &);
|
||||
double u0_imag_exact(const Vector &);
|
||||
real_t u0_real_exact(const Vector &);
|
||||
real_t u0_imag_exact(const Vector &);
|
||||
|
||||
void u1_real_exact(const Vector &, Vector &);
|
||||
void u1_imag_exact(const Vector &, Vector &);
|
||||
@@ -87,8 +87,8 @@ int main(int argc, char *argv[])
|
||||
int par_ref_levels = 1;
|
||||
int order = 1;
|
||||
int prob = 0;
|
||||
double freq = -1.0;
|
||||
double a_coef = 0.0;
|
||||
real_t freq = -1.0;
|
||||
real_t a_coef = 0.0;
|
||||
bool visualization = 1;
|
||||
bool herm_conv = true;
|
||||
bool exact_sol = true;
|
||||
@@ -475,8 +475,8 @@ int main(int argc, char *argv[])
|
||||
|
||||
if (exact_sol)
|
||||
{
|
||||
double err_r = -1.0;
|
||||
double err_i = -1.0;
|
||||
real_t err_r = -1.0;
|
||||
real_t err_i = -1.0;
|
||||
|
||||
switch (prob)
|
||||
{
|
||||
@@ -576,7 +576,7 @@ int main(int argc, char *argv[])
|
||||
int i = 0;
|
||||
while (sol_sock)
|
||||
{
|
||||
double t = (double)(i % num_frames) / num_frames;
|
||||
real_t t = (real_t)(i % num_frames) / num_frames;
|
||||
ostringstream oss;
|
||||
oss << "Harmonic Solution (t = " << t << " T)";
|
||||
|
||||
@@ -608,21 +608,21 @@ bool check_for_inline_mesh(const char * mesh_file)
|
||||
return s0 == "inline-";
|
||||
}
|
||||
|
||||
complex<double> u0_exact(const Vector &x)
|
||||
complex<real_t> u0_exact(const Vector &x)
|
||||
{
|
||||
int dim = x.Size();
|
||||
complex<double> i(0.0, 1.0);
|
||||
complex<double> alpha = (epsilon_ * omega_ - i * sigma_);
|
||||
complex<double> kappa = std::sqrt(mu_ * omega_* alpha);
|
||||
complex<real_t> i(0.0, 1.0);
|
||||
complex<real_t> alpha = (epsilon_ * omega_ - i * sigma_);
|
||||
complex<real_t> kappa = std::sqrt(mu_ * omega_* alpha);
|
||||
return std::exp(-i * kappa * x[dim - 1]);
|
||||
}
|
||||
|
||||
double u0_real_exact(const Vector &x)
|
||||
real_t u0_real_exact(const Vector &x)
|
||||
{
|
||||
return u0_exact(x).real();
|
||||
}
|
||||
|
||||
double u0_imag_exact(const Vector &x)
|
||||
real_t u0_imag_exact(const Vector &x)
|
||||
{
|
||||
return u0_exact(x).imag();
|
||||
}
|
||||
|
||||
+14
-15
@@ -46,7 +46,7 @@ protected:
|
||||
|
||||
SparseMatrix Mmat, Kmat, Kmat0;
|
||||
SparseMatrix *T; // T = M + dt K
|
||||
double current_dt;
|
||||
real_t current_dt;
|
||||
|
||||
CGSolver M_solver; // Krylov solver for inverting the mass matrix M
|
||||
DSmoother M_prec; // Preconditioner for the mass matrix M
|
||||
@@ -58,7 +58,7 @@ protected:
|
||||
mutable Vector z; // auxiliary vector
|
||||
|
||||
public:
|
||||
WaveOperator(FiniteElementSpace &f, Array<int> &ess_bdr,double speed);
|
||||
WaveOperator(FiniteElementSpace &f, Array<int> &ess_bdr, real_t speed);
|
||||
|
||||
using SecondOrderTimeDependentOperator::Mult;
|
||||
virtual void Mult(const Vector &u, const Vector &du_dt,
|
||||
@@ -68,7 +68,7 @@ public:
|
||||
d2udt2 = f(u + fac0*d2udt2,dudt + fac1*d2udt2, t),
|
||||
for the unknown d2udt2. */
|
||||
using SecondOrderTimeDependentOperator::ImplicitSolve;
|
||||
virtual void ImplicitSolve(const double fac0, const double fac1,
|
||||
virtual void ImplicitSolve(const real_t fac0, const real_t fac1,
|
||||
const Vector &u, const Vector &dudt, Vector &d2udt2);
|
||||
|
||||
///
|
||||
@@ -79,12 +79,11 @@ public:
|
||||
|
||||
|
||||
WaveOperator::WaveOperator(FiniteElementSpace &f,
|
||||
Array<int> &ess_bdr, double speed)
|
||||
: SecondOrderTimeDependentOperator(f.GetTrueVSize(), 0.0), fespace(f), M(NULL),
|
||||
K(NULL),
|
||||
T(NULL), current_dt(0.0), z(height)
|
||||
Array<int> &ess_bdr, real_t speed)
|
||||
: SecondOrderTimeDependentOperator(f.GetTrueVSize(), (real_t) 0.0),
|
||||
fespace(f), M(NULL), K(NULL), T(NULL), current_dt(0.0), z(height)
|
||||
{
|
||||
const double rel_tol = 1e-8;
|
||||
const real_t rel_tol = 1e-8;
|
||||
|
||||
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
|
||||
@@ -132,7 +131,7 @@ void WaveOperator::Mult(const Vector &u, const Vector &du_dt,
|
||||
M_solver.Mult(z, d2udt2);
|
||||
}
|
||||
|
||||
void WaveOperator::ImplicitSolve(const double fac0, const double fac1,
|
||||
void WaveOperator::ImplicitSolve(const real_t fac0, const real_t fac1,
|
||||
const Vector &u, const Vector &dudt, Vector &d2udt2)
|
||||
{
|
||||
// Solve the equation:
|
||||
@@ -167,12 +166,12 @@ WaveOperator::~WaveOperator()
|
||||
delete c2;
|
||||
}
|
||||
|
||||
double InitialSolution(const Vector &x)
|
||||
real_t InitialSolution(const Vector &x)
|
||||
{
|
||||
return exp(-x.Norml2()*x.Norml2()*30);
|
||||
}
|
||||
|
||||
double InitialRate(const Vector &x)
|
||||
real_t InitialRate(const Vector &x)
|
||||
{
|
||||
return 0.0;
|
||||
}
|
||||
@@ -186,9 +185,9 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 2;
|
||||
int order = 2;
|
||||
int ode_solver_type = 10;
|
||||
double t_final = 0.5;
|
||||
double dt = 1.0e-2;
|
||||
double speed = 1.0;
|
||||
real_t t_final = 0.5;
|
||||
real_t dt = 1.0e-2;
|
||||
real_t speed = 1.0;
|
||||
bool visualization = true;
|
||||
bool visit = true;
|
||||
bool dirichlet = true;
|
||||
@@ -366,7 +365,7 @@ int main(int argc, char *argv[])
|
||||
// 8. Perform time-integration (looping over the time iterations, ti, with a
|
||||
// time-step dt).
|
||||
ode_solver->Init(oper);
|
||||
double t = 0.0;
|
||||
real_t t = 0.0;
|
||||
|
||||
bool last_step = false;
|
||||
for (int ti = 1; !last_step; ti++)
|
||||
|
||||
+14
-14
@@ -44,14 +44,14 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
double p_exact(const Vector &x);
|
||||
real_t p_exact(const Vector &x);
|
||||
void gradp_exact(const Vector &, Vector &);
|
||||
double div_gradp_exact(const Vector &x);
|
||||
real_t div_gradp_exact(const Vector &x);
|
||||
void v_exact(const Vector &x, Vector &v);
|
||||
void curlv_exact(const Vector &x, Vector &cv);
|
||||
|
||||
int dim;
|
||||
double freq = 1.0, kappa;
|
||||
real_t freq = 1.0, kappa;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -304,9 +304,9 @@ int main(int argc, char *argv[])
|
||||
// 12. Compute and print the L_2 norm of the error.
|
||||
if (prob == 0)
|
||||
{
|
||||
double errSol = x.ComputeL2Error(gradp_coef);
|
||||
double errInterp = discreteInterpolant.ComputeL2Error(gradp_coef);
|
||||
double errProj = exact_proj.ComputeL2Error(gradp_coef);
|
||||
real_t errSol = x.ComputeL2Error(gradp_coef);
|
||||
real_t errInterp = discreteInterpolant.ComputeL2Error(gradp_coef);
|
||||
real_t errProj = exact_proj.ComputeL2Error(gradp_coef);
|
||||
|
||||
cout << "\n Solution of (E_h,v) = (grad p_h,v) for E_h and v in H(curl): "
|
||||
"|| E_h - grad p ||_{L_2} = " << errSol << '\n' << endl;
|
||||
@@ -317,9 +317,9 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
double errSol = x.ComputeL2Error(curlv_coef);
|
||||
double errInterp = discreteInterpolant.ComputeL2Error(curlv_coef);
|
||||
double errProj = exact_proj.ComputeL2Error(curlv_coef);
|
||||
real_t errSol = x.ComputeL2Error(curlv_coef);
|
||||
real_t errInterp = discreteInterpolant.ComputeL2Error(curlv_coef);
|
||||
real_t errProj = exact_proj.ComputeL2Error(curlv_coef);
|
||||
|
||||
cout << "\n Solution of (E_h,w) = (curl v_h,w) for E_h and w in H(div): "
|
||||
"|| E_h - curl v ||_{L_2} = " << errSol << '\n' << endl;
|
||||
@@ -337,9 +337,9 @@ int main(int argc, char *argv[])
|
||||
irs[i] = &(IntRules.Get(i, order_quad));
|
||||
}
|
||||
|
||||
double errSol = x.ComputeL2Error(divgradp_coef, irs);
|
||||
double errInterp = discreteInterpolant.ComputeL2Error(divgradp_coef, irs);
|
||||
double errProj = exact_proj.ComputeL2Error(divgradp_coef, irs);
|
||||
real_t errSol = x.ComputeL2Error(divgradp_coef, irs);
|
||||
real_t errInterp = discreteInterpolant.ComputeL2Error(divgradp_coef, irs);
|
||||
real_t errProj = exact_proj.ComputeL2Error(divgradp_coef, irs);
|
||||
|
||||
cout << "\n Solution of (f_h,q) = (div v_h,q) for f_h and q in L_2: "
|
||||
"|| f_h - div v ||_{L_2} = " << errSol << '\n' << endl;
|
||||
@@ -376,7 +376,7 @@ int main(int argc, char *argv[])
|
||||
return 0;
|
||||
}
|
||||
|
||||
double p_exact(const Vector &x)
|
||||
real_t p_exact(const Vector &x)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
@@ -406,7 +406,7 @@ void gradp_exact(const Vector &x, Vector &f)
|
||||
}
|
||||
}
|
||||
|
||||
double div_gradp_exact(const Vector &x)
|
||||
real_t div_gradp_exact(const Vector &x)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
|
||||
+14
-14
@@ -44,14 +44,14 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
double p_exact(const Vector &x);
|
||||
real_t p_exact(const Vector &x);
|
||||
void gradp_exact(const Vector &, Vector &);
|
||||
double div_gradp_exact(const Vector &x);
|
||||
real_t div_gradp_exact(const Vector &x);
|
||||
void v_exact(const Vector &x, Vector &v);
|
||||
void curlv_exact(const Vector &x, Vector &cv);
|
||||
|
||||
int dim;
|
||||
double freq = 1.0, kappa;
|
||||
real_t freq = 1.0, kappa;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -352,9 +352,9 @@ int main(int argc, char *argv[])
|
||||
// 14. Compute and print the L_2 norm of the error.
|
||||
if (prob == 0)
|
||||
{
|
||||
double errSol = x.ComputeL2Error(gradp_coef);
|
||||
double errInterp = discreteInterpolant.ComputeL2Error(gradp_coef);
|
||||
double errProj = exact_proj.ComputeL2Error(gradp_coef);
|
||||
real_t errSol = x.ComputeL2Error(gradp_coef);
|
||||
real_t errInterp = discreteInterpolant.ComputeL2Error(gradp_coef);
|
||||
real_t errProj = exact_proj.ComputeL2Error(gradp_coef);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
@@ -368,9 +368,9 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
else if (prob == 1)
|
||||
{
|
||||
double errSol = x.ComputeL2Error(curlv_coef);
|
||||
double errInterp = discreteInterpolant.ComputeL2Error(curlv_coef);
|
||||
double errProj = exact_proj.ComputeL2Error(curlv_coef);
|
||||
real_t errSol = x.ComputeL2Error(curlv_coef);
|
||||
real_t errInterp = discreteInterpolant.ComputeL2Error(curlv_coef);
|
||||
real_t errProj = exact_proj.ComputeL2Error(curlv_coef);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
@@ -391,9 +391,9 @@ int main(int argc, char *argv[])
|
||||
irs[i] = &(IntRules.Get(i, order_quad));
|
||||
}
|
||||
|
||||
double errSol = x.ComputeL2Error(divgradp_coef, irs);
|
||||
double errInterp = discreteInterpolant.ComputeL2Error(divgradp_coef, irs);
|
||||
double errProj = exact_proj.ComputeL2Error(divgradp_coef, irs);
|
||||
real_t errSol = x.ComputeL2Error(divgradp_coef, irs);
|
||||
real_t errInterp = discreteInterpolant.ComputeL2Error(divgradp_coef, irs);
|
||||
real_t errProj = exact_proj.ComputeL2Error(divgradp_coef, irs);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
@@ -441,7 +441,7 @@ int main(int argc, char *argv[])
|
||||
return 0;
|
||||
}
|
||||
|
||||
double p_exact(const Vector &x)
|
||||
real_t p_exact(const Vector &x)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
@@ -471,7 +471,7 @@ void gradp_exact(const Vector &x, Vector &f)
|
||||
}
|
||||
}
|
||||
|
||||
double div_gradp_exact(const Vector &x)
|
||||
real_t div_gradp_exact(const Vector &x)
|
||||
{
|
||||
if (dim == 3)
|
||||
{
|
||||
|
||||
+120
-116
@@ -53,13 +53,13 @@ private:
|
||||
int dim;
|
||||
|
||||
// Length of the PML Region in each direction
|
||||
Array2D<double> length;
|
||||
Array2D<real_t> length;
|
||||
|
||||
// Computational Domain Boundary
|
||||
Array2D<double> comp_dom_bdr;
|
||||
Array2D<real_t> comp_dom_bdr;
|
||||
|
||||
// Domain Boundary
|
||||
Array2D<double> dom_bdr;
|
||||
Array2D<real_t> dom_bdr;
|
||||
|
||||
// Integer Array identifying elements in the PML
|
||||
// 0: in the PML, 1: not in the PML
|
||||
@@ -70,13 +70,13 @@ private:
|
||||
|
||||
public:
|
||||
// Constructor
|
||||
PML(Mesh *mesh_,Array2D<double> length_);
|
||||
PML(Mesh *mesh_,Array2D<real_t> length_);
|
||||
|
||||
// Return Computational Domain Boundary
|
||||
Array2D<double> GetCompDomainBdr() {return comp_dom_bdr;}
|
||||
Array2D<real_t> GetCompDomainBdr() {return comp_dom_bdr;}
|
||||
|
||||
// Return Domain Boundary
|
||||
Array2D<double> GetDomainBdr() {return dom_bdr;}
|
||||
Array2D<real_t> GetDomainBdr() {return dom_bdr;}
|
||||
|
||||
// Return Markers list for elements
|
||||
Array<int> * GetMarkedPMLElements() {return &elems;}
|
||||
@@ -85,7 +85,7 @@ public:
|
||||
void SetAttributes(Mesh *mesh_);
|
||||
|
||||
// PML complex stretching function
|
||||
void StretchFunction(const Vector &x, vector<complex<double>> &dxs);
|
||||
void StretchFunction(const Vector &x, vector<complex<real_t>> &dxs);
|
||||
};
|
||||
|
||||
// Class for returning the PML coefficients of the bilinear form
|
||||
@@ -106,7 +106,7 @@ public:
|
||||
virtual void Eval(Vector &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
double x[3];
|
||||
real_t x[3];
|
||||
Vector transip(x, 3);
|
||||
T.Transform(ip, transip);
|
||||
K.SetSize(vdim);
|
||||
@@ -114,7 +114,7 @@ public:
|
||||
}
|
||||
};
|
||||
|
||||
void maxwell_solution(const Vector &x, vector<complex<double>> &Eval);
|
||||
void maxwell_solution(const Vector &x, vector<complex<real_t>> &Eval);
|
||||
|
||||
void E_bdr_data_Re(const Vector &x, Vector &E);
|
||||
void E_bdr_data_Im(const Vector &x, Vector &E);
|
||||
@@ -134,15 +134,17 @@ void detJ_inv_JT_J_Re(const Vector &x, PML * pml, Vector &D);
|
||||
void detJ_inv_JT_J_Im(const Vector &x, PML * pml, Vector &D);
|
||||
void detJ_inv_JT_J_abs(const Vector &x, PML * pml, Vector &D);
|
||||
|
||||
Array2D<double> comp_domain_bdr;
|
||||
Array2D<double> domain_bdr;
|
||||
Array2D<real_t> comp_domain_bdr;
|
||||
Array2D<real_t> domain_bdr;
|
||||
|
||||
double mu = 1.0;
|
||||
double epsilon = 1.0;
|
||||
double omega;
|
||||
real_t mu = 1.0;
|
||||
real_t epsilon = 1.0;
|
||||
real_t omega;
|
||||
int dim;
|
||||
bool exact_known = false;
|
||||
|
||||
template <typename T> T pow2(const T &x) { return x*x; }
|
||||
|
||||
enum prob_type
|
||||
{
|
||||
beam, // Wave propagating in a beam-like domain
|
||||
@@ -160,7 +162,7 @@ int main(int argc, char *argv[])
|
||||
int order = 1;
|
||||
int ref_levels = 3;
|
||||
int iprob = 4;
|
||||
double freq = 5.0;
|
||||
real_t freq = 5.0;
|
||||
bool herm_conv = true;
|
||||
bool umf_solver = false;
|
||||
bool visualization = 1;
|
||||
@@ -241,10 +243,10 @@ int main(int argc, char *argv[])
|
||||
dim = mesh->Dimension();
|
||||
|
||||
// Angular frequency
|
||||
omega = 2.0 * M_PI * freq;
|
||||
omega = real_t(2.0 * M_PI) * freq;
|
||||
|
||||
// Setup PML length
|
||||
Array2D<double> length(dim, 2); length = 0.0;
|
||||
Array2D<real_t> length(dim, 2); length = 0.0;
|
||||
|
||||
// 4. Setup the Cartesian PML region.
|
||||
switch (prob)
|
||||
@@ -312,14 +314,15 @@ int main(int argc, char *argv[])
|
||||
switch (prob)
|
||||
{
|
||||
case lshape:
|
||||
if (center[0] == 1.0 || center[0] == 0.5 || center[1] == 0.5)
|
||||
if (center[0] == 1_r || center[0] == 0.5_r ||
|
||||
center[1] == 0.5_r)
|
||||
{
|
||||
ess_bdr[k - 1] = 1;
|
||||
}
|
||||
break;
|
||||
case fichera:
|
||||
if (center[0] == -1.0 || center[0] == 0.0 ||
|
||||
center[1] == 0.0 || center[2] == 0.0)
|
||||
if (center[0] == -1_r || center[0] == 0_r ||
|
||||
center[1] == 0_r || center[2] == 0_r)
|
||||
{
|
||||
ess_bdr[k - 1] = 1;
|
||||
}
|
||||
@@ -378,8 +381,8 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
ConstantCoefficient muinv(1.0/mu);
|
||||
ConstantCoefficient omeg(-pow(omega, 2) * epsilon);
|
||||
ConstantCoefficient muinv(1_r / mu);
|
||||
ConstantCoefficient omeg(-pow2(omega) * epsilon);
|
||||
RestrictedCoefficient restr_muinv(muinv,attr);
|
||||
RestrictedCoefficient restr_omeg(omeg,attr);
|
||||
|
||||
@@ -439,7 +442,7 @@ int main(int argc, char *argv[])
|
||||
// + omega^2 * epsilon (abs(det(J) * (J^T J)^-1) * E, F)
|
||||
if (pa || !umf_solver)
|
||||
{
|
||||
ConstantCoefficient absomeg(pow(omega, 2) * epsilon);
|
||||
ConstantCoefficient absomeg(pow2(omega) * epsilon);
|
||||
RestrictedCoefficient restr_absomeg(absomeg,attr);
|
||||
|
||||
BilinearForm prec(fespace);
|
||||
@@ -470,7 +473,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
std::unique_ptr<Operator> pc_r;
|
||||
std::unique_ptr<Operator> pc_i;
|
||||
double s = (conv == ComplexOperator::HERMITIAN) ? -1.0 : 1.0;
|
||||
real_t s = (conv == ComplexOperator::HERMITIAN) ? -1_r : 1_r;
|
||||
if (pa)
|
||||
{
|
||||
// Jacobi Smoother
|
||||
@@ -519,14 +522,14 @@ int main(int argc, char *argv[])
|
||||
irs[i] = &(IntRules.Get(i, order_quad));
|
||||
}
|
||||
|
||||
double L2Error_Re = x.real().ComputeL2Error(E_ex_Re, irs,
|
||||
real_t L2Error_Re = x.real().ComputeL2Error(E_ex_Re, irs,
|
||||
pml->GetMarkedPMLElements());
|
||||
double L2Error_Im = x.imag().ComputeL2Error(E_ex_Im, irs,
|
||||
real_t L2Error_Im = x.imag().ComputeL2Error(E_ex_Im, irs,
|
||||
pml->GetMarkedPMLElements());
|
||||
|
||||
ComplexGridFunction x_gf0(fespace);
|
||||
x_gf0 = 0.0;
|
||||
double norm_E_Re, norm_E_Im;
|
||||
real_t norm_E_Re, norm_E_Im;
|
||||
norm_E_Re = x_gf0.real().ComputeL2Error(E_ex_Re, irs,
|
||||
pml->GetMarkedPMLElements());
|
||||
norm_E_Im = x_gf0.imag().ComputeL2Error(E_ex_Im, irs,
|
||||
@@ -593,12 +596,12 @@ int main(int argc, char *argv[])
|
||||
int i = 0;
|
||||
while (sol_sock)
|
||||
{
|
||||
double t = (double)(i % num_frames) / num_frames;
|
||||
real_t t = (real_t)(i % num_frames) / num_frames;
|
||||
ostringstream oss;
|
||||
oss << "Harmonic Solution (t = " << t << " T)";
|
||||
|
||||
add(cos(2.0 * M_PI * t), x.real(),
|
||||
sin(2.0 * M_PI * t), x.imag(), x_t);
|
||||
add(cos(real_t(2.0 * M_PI) * t), x.real(),
|
||||
sin(real_t(2.0 * M_PI) * t), x.imag(), x_t);
|
||||
sol_sock << "solution\n"
|
||||
<< *mesh << x_t
|
||||
<< "window_title '" << oss.str() << "'" << flush;
|
||||
@@ -617,20 +620,20 @@ int main(int argc, char *argv[])
|
||||
void source(const Vector &x, Vector &f)
|
||||
{
|
||||
Vector center(dim);
|
||||
double r = 0.0;
|
||||
real_t r = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
center(i) = 0.5 * (comp_domain_bdr(i, 0) + comp_domain_bdr(i, 1));
|
||||
r += pow(x[i] - center[i], 2.);
|
||||
center(i) = 0.5_r * (comp_domain_bdr(i, 0) + comp_domain_bdr(i, 1));
|
||||
r += pow2(x[i] - center[i]);
|
||||
}
|
||||
double n = 5.0 * omega * sqrt(epsilon * mu) / M_PI;
|
||||
double coeff = pow(n, 2) / M_PI;
|
||||
double alpha = -pow(n, 2) * r;
|
||||
real_t n = 5_r * omega * sqrt(epsilon * mu) / real_t(M_PI);
|
||||
real_t coeff = pow2(n) / real_t(M_PI);
|
||||
real_t alpha = -pow2(n) * r;
|
||||
f = 0.0;
|
||||
f[0] = coeff * exp(alpha);
|
||||
}
|
||||
|
||||
void maxwell_solution(const Vector &x, vector<complex<double>> &E)
|
||||
void maxwell_solution(const Vector &x, vector<complex<real_t>> &E)
|
||||
{
|
||||
// Initialize
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -638,8 +641,8 @@ void maxwell_solution(const Vector &x, vector<complex<double>> &E)
|
||||
E[i] = 0.0;
|
||||
}
|
||||
|
||||
complex<double> zi = complex<double>(0., 1.);
|
||||
double k = omega * sqrt(epsilon * mu);
|
||||
constexpr complex<real_t> zi = complex<real_t>(0., 1.);
|
||||
real_t k = omega * sqrt(epsilon * mu);
|
||||
switch (prob)
|
||||
{
|
||||
case disc:
|
||||
@@ -654,58 +657,58 @@ void maxwell_solution(const Vector &x, vector<complex<double>> &E)
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
double x0 = x(0) + shift(0);
|
||||
double x1 = x(1) + shift(1);
|
||||
double r = sqrt(x0 * x0 + x1 * x1);
|
||||
double beta = k * r;
|
||||
real_t x0 = x(0) + shift(0);
|
||||
real_t x1 = x(1) + shift(1);
|
||||
real_t r = sqrt(x0 * x0 + x1 * x1);
|
||||
real_t beta = k * r;
|
||||
|
||||
// Bessel functions
|
||||
complex<double> Ho, Ho_r, Ho_rr;
|
||||
Ho = jn(0, beta) + zi * yn(0, beta);
|
||||
Ho_r = -k * (jn(1, beta) + zi * yn(1, beta));
|
||||
Ho_rr = -k * k * (1.0 / beta *
|
||||
(jn(1, beta) + zi * yn(1, beta)) -
|
||||
(jn(2, beta) + zi * yn(2, beta)));
|
||||
complex<real_t> Ho, Ho_r, Ho_rr;
|
||||
Ho = real_t(jn(0, beta)) + zi * real_t(yn(0, beta));
|
||||
Ho_r = -k * (real_t(jn(1, beta)) + zi * real_t(yn(1, beta)));
|
||||
Ho_rr = -k * k * (1_r / beta *
|
||||
(real_t(jn(1, beta)) + zi * real_t(yn(1, beta))) -
|
||||
(real_t(jn(2, beta)) + zi * real_t(yn(2, beta))));
|
||||
|
||||
// First derivatives
|
||||
double r_x = x0 / r;
|
||||
double r_y = x1 / r;
|
||||
double r_xy = -(r_x / r) * r_y;
|
||||
double r_xx = (1.0 / r) * (1.0 - r_x * r_x);
|
||||
real_t r_x = x0 / r;
|
||||
real_t r_y = x1 / r;
|
||||
real_t r_xy = -(r_x / r) * r_y;
|
||||
real_t r_xx = (1_r / r) * (1_r - r_x * r_x);
|
||||
|
||||
complex<double> val, val_xx, val_xy;
|
||||
val = 0.25 * zi * Ho;
|
||||
val_xx = 0.25 * zi * (r_xx * Ho_r + r_x * r_x * Ho_rr);
|
||||
val_xy = 0.25 * zi * (r_xy * Ho_r + r_x * r_y * Ho_rr);
|
||||
complex<real_t> val, val_xx, val_xy;
|
||||
val = real_t(0.25) * zi * Ho;
|
||||
val_xx = real_t(0.25) * zi * (r_xx * Ho_r + r_x * r_x * Ho_rr);
|
||||
val_xy = real_t(0.25) * zi * (r_xy * Ho_r + r_x * r_y * Ho_rr);
|
||||
E[0] = zi / k * (k * k * val + val_xx);
|
||||
E[1] = zi / k * val_xy;
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
double x0 = x(0) + shift(0);
|
||||
double x1 = x(1) + shift(1);
|
||||
double x2 = x(2) + shift(2);
|
||||
double r = sqrt(x0 * x0 + x1 * x1 + x2 * x2);
|
||||
real_t x0 = x(0) + shift(0);
|
||||
real_t x1 = x(1) + shift(1);
|
||||
real_t x2 = x(2) + shift(2);
|
||||
real_t r = sqrt(x0 * x0 + x1 * x1 + x2 * x2);
|
||||
|
||||
double r_x = x0 / r;
|
||||
double r_y = x1 / r;
|
||||
double r_z = x2 / r;
|
||||
double r_xx = (1.0 / r) * (1.0 - r_x * r_x);
|
||||
double r_yx = -(r_y / r) * r_x;
|
||||
double r_zx = -(r_z / r) * r_x;
|
||||
real_t r_x = x0 / r;
|
||||
real_t r_y = x1 / r;
|
||||
real_t r_z = x2 / r;
|
||||
real_t r_xx = (1_r / r) * (1_r - r_x * r_x);
|
||||
real_t r_yx = -(r_y / r) * r_x;
|
||||
real_t r_zx = -(r_z / r) * r_x;
|
||||
|
||||
complex<double> val, val_r, val_rr;
|
||||
complex<real_t> val, val_r, val_rr;
|
||||
val = exp(zi * k * r) / r;
|
||||
val_r = val / r * (zi * k * r - 1.0);
|
||||
val_r = val / r * (zi * k * r - 1_r);
|
||||
val_rr = val / (r * r) * (-k * k * r * r
|
||||
- 2.0 * zi * k * r + 2.0);
|
||||
- real_t(2) * zi * k * r + real_t(2));
|
||||
|
||||
complex<double> val_xx, val_yx, val_zx;
|
||||
complex<real_t> val_xx, val_yx, val_zx;
|
||||
val_xx = val_rr * r_x * r_x + val_r * r_xx;
|
||||
val_yx = val_rr * r_x * r_y + val_r * r_yx;
|
||||
val_zx = val_rr * r_x * r_z + val_r * r_zx;
|
||||
|
||||
complex<double> alpha = zi * k / 4.0 / M_PI / k / k;
|
||||
complex<real_t> alpha = zi * k / real_t(4) / (real_t) M_PI / k / k;
|
||||
E[0] = alpha * (k * k * val + val_xx);
|
||||
E[1] = alpha * val_yx;
|
||||
E[2] = alpha * val_zx;
|
||||
@@ -717,12 +720,13 @@ void maxwell_solution(const Vector &x, vector<complex<double>> &E)
|
||||
// T_10 mode
|
||||
if (dim == 3)
|
||||
{
|
||||
double k10 = sqrt(k * k - M_PI * M_PI);
|
||||
E[1] = -zi * k / M_PI * sin(M_PI*x(2))*exp(zi * k10 * x(0));
|
||||
real_t k10 = sqrt(k * k - real_t(M_PI * M_PI));
|
||||
E[1] = -zi * k / (real_t) M_PI *
|
||||
sin((real_t) M_PI*x(2))*exp(zi * k10 * x(0));
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
E[1] = -zi * k / M_PI * exp(zi * k * x(0));
|
||||
E[1] = -zi * k / (real_t) M_PI * exp(zi * k * x(0));
|
||||
}
|
||||
break;
|
||||
}
|
||||
@@ -733,7 +737,7 @@ void maxwell_solution(const Vector &x, vector<complex<double>> &E)
|
||||
|
||||
void E_exact_Re(const Vector &x, Vector &E)
|
||||
{
|
||||
vector<complex<double>> Eval(E.Size());
|
||||
vector<complex<real_t>> Eval(E.Size());
|
||||
maxwell_solution(x, Eval);
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
@@ -743,7 +747,7 @@ void E_exact_Re(const Vector &x, Vector &E)
|
||||
|
||||
void E_exact_Im(const Vector &x, Vector &E)
|
||||
{
|
||||
vector<complex<double>> Eval(E.Size());
|
||||
vector<complex<real_t>> Eval(E.Size());
|
||||
maxwell_solution(x, Eval);
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
@@ -759,8 +763,8 @@ void E_bdr_data_Re(const Vector &x, Vector &E)
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
// check if in PML
|
||||
if (x(i) - comp_domain_bdr(i, 0) < 0.0 ||
|
||||
x(i) - comp_domain_bdr(i, 1) > 0.0)
|
||||
if (x(i) - comp_domain_bdr(i, 0) < 0_r ||
|
||||
x(i) - comp_domain_bdr(i, 1) > 0_r)
|
||||
{
|
||||
in_pml = true;
|
||||
break;
|
||||
@@ -768,7 +772,7 @@ void E_bdr_data_Re(const Vector &x, Vector &E)
|
||||
}
|
||||
if (!in_pml)
|
||||
{
|
||||
vector<complex<double>> Eval(E.Size());
|
||||
vector<complex<real_t>> Eval(E.Size());
|
||||
maxwell_solution(x, Eval);
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
@@ -786,8 +790,8 @@ void E_bdr_data_Im(const Vector &x, Vector &E)
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
// check if in PML
|
||||
if (x(i) - comp_domain_bdr(i, 0) < 0.0 ||
|
||||
x(i) - comp_domain_bdr(i, 1) > 0.0)
|
||||
if (x(i) - comp_domain_bdr(i, 0) < 0_r ||
|
||||
x(i) - comp_domain_bdr(i, 1) > 0_r)
|
||||
{
|
||||
in_pml = true;
|
||||
break;
|
||||
@@ -795,7 +799,7 @@ void E_bdr_data_Im(const Vector &x, Vector &E)
|
||||
}
|
||||
if (!in_pml)
|
||||
{
|
||||
vector<complex<double>> Eval(E.Size());
|
||||
vector<complex<real_t>> Eval(E.Size());
|
||||
maxwell_solution(x, Eval);
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
@@ -806,8 +810,8 @@ void E_bdr_data_Im(const Vector &x, Vector &E)
|
||||
|
||||
void detJ_JT_J_inv_Re(const Vector &x, PML * pml, Vector &D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det(1.0, 0.0);
|
||||
vector<complex<real_t>> dxs(dim);
|
||||
complex<real_t> det(1.0, 0.0);
|
||||
pml->StretchFunction(x, dxs);
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -817,14 +821,14 @@ void detJ_JT_J_inv_Re(const Vector &x, PML * pml, Vector &D)
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (det / pow(dxs[i], 2)).real();
|
||||
D(i) = (det / pow2(dxs[i])).real();
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_Im(const Vector &x, PML * pml, Vector &D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
vector<complex<real_t>> dxs(dim);
|
||||
complex<real_t> det = 1.0;
|
||||
pml->StretchFunction(x, dxs);
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -834,14 +838,14 @@ void detJ_JT_J_inv_Im(const Vector &x, PML * pml, Vector &D)
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (det / pow(dxs[i], 2)).imag();
|
||||
D(i) = (det / pow2(dxs[i])).imag();
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_abs(const Vector &x, PML * pml, Vector &D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
vector<complex<real_t>> dxs(dim);
|
||||
complex<real_t> det = 1.0;
|
||||
pml->StretchFunction(x, dxs);
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -851,14 +855,14 @@ void detJ_JT_J_inv_abs(const Vector &x, PML * pml, Vector &D)
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = abs(det / pow(dxs[i], 2));
|
||||
D(i) = abs(det / pow2(dxs[i]));
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_Re(const Vector &x, PML * pml, Vector &D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det(1.0, 0.0);
|
||||
vector<complex<real_t>> dxs(dim);
|
||||
complex<real_t> det(1.0, 0.0);
|
||||
pml->StretchFunction(x, dxs);
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -869,21 +873,21 @@ void detJ_inv_JT_J_Re(const Vector &x, PML * pml, Vector &D)
|
||||
// in the 2D case the coefficient is scalar 1/det(J)
|
||||
if (dim == 2)
|
||||
{
|
||||
D = (1.0 / det).real();
|
||||
D = (1_r / det).real();
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (pow(dxs[i], 2) / det).real();
|
||||
D(i) = (pow2(dxs[i]) / det).real();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_Im(const Vector &x, PML * pml, Vector &D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
vector<complex<real_t>> dxs(dim);
|
||||
complex<real_t> det = 1.0;
|
||||
pml->StretchFunction(x, dxs);
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -893,21 +897,21 @@ void detJ_inv_JT_J_Im(const Vector &x, PML * pml, Vector &D)
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
D = (1.0 / det).imag();
|
||||
D = (1_r / det).imag();
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (pow(dxs[i], 2) / det).imag();
|
||||
D(i) = (pow2(dxs[i]) / det).imag();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_abs(const Vector &x, PML * pml, Vector &D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
vector<complex<real_t>> dxs(dim);
|
||||
complex<real_t> det = 1.0;
|
||||
pml->StretchFunction(x, dxs);
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -917,18 +921,18 @@ void detJ_inv_JT_J_abs(const Vector &x, PML * pml, Vector &D)
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
D = abs(1.0 / det);
|
||||
D = abs(1_r / det);
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = abs(pow(dxs[i], 2) / det);
|
||||
D(i) = abs(pow2(dxs[i]) / det);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
PML::PML(Mesh *mesh_, Array2D<double> length_)
|
||||
PML::PML(Mesh *mesh_, Array2D<real_t> length_)
|
||||
: mesh(mesh_), length(length_)
|
||||
{
|
||||
dim = mesh->Dimension();
|
||||
@@ -979,7 +983,7 @@ void PML::SetAttributes(Mesh *mesh_)
|
||||
for (int iv = 0; iv < nrvert; ++iv)
|
||||
{
|
||||
int vert_idx = vertices[iv];
|
||||
double *coords = mesh_->GetVertex(vert_idx);
|
||||
real_t *coords = mesh_->GetVertex(vert_idx);
|
||||
for (int comp = 0; comp < dim; ++comp)
|
||||
{
|
||||
if (coords[comp] > comp_dom_bdr(comp, 1) ||
|
||||
@@ -1000,14 +1004,14 @@ void PML::SetAttributes(Mesh *mesh_)
|
||||
}
|
||||
|
||||
void PML::StretchFunction(const Vector &x,
|
||||
vector<complex<double>> &dxs)
|
||||
vector<complex<real_t>> &dxs)
|
||||
{
|
||||
complex<double> zi = complex<double>(0., 1.);
|
||||
constexpr complex<real_t> zi = complex<real_t>(0., 1.);
|
||||
|
||||
double n = 2.0;
|
||||
double c = 5.0;
|
||||
double coeff;
|
||||
double k = omega * sqrt(epsilon * mu);
|
||||
real_t n = 2.0;
|
||||
real_t c = 5.0;
|
||||
real_t coeff;
|
||||
real_t k = omega * sqrt(epsilon * mu);
|
||||
|
||||
// Stretch in each direction independently
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -1016,14 +1020,14 @@ void PML::StretchFunction(const Vector &x,
|
||||
if (x(i) >= comp_domain_bdr(i, 1))
|
||||
{
|
||||
coeff = n * c / k / pow(length(i, 1), n);
|
||||
dxs[i] = 1.0 + zi * coeff *
|
||||
abs(pow(x(i) - comp_domain_bdr(i, 1), n - 1.0));
|
||||
dxs[i] = 1_r + zi * coeff *
|
||||
abs(pow(x(i) - comp_domain_bdr(i, 1), n - 1_r));
|
||||
}
|
||||
if (x(i) <= comp_domain_bdr(i, 0))
|
||||
{
|
||||
coeff = n * c / k / pow(length(i, 0), n);
|
||||
dxs[i] = 1.0 + zi * coeff *
|
||||
abs(pow(x(i) - comp_domain_bdr(i, 0), n - 1.0));
|
||||
dxs[i] = 1_r + zi * coeff *
|
||||
abs(pow(x(i) - comp_domain_bdr(i, 0), n - 1_r));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
+120
-115
@@ -52,13 +52,13 @@ private:
|
||||
int dim;
|
||||
|
||||
// Length of the PML Region in each direction
|
||||
Array2D<double> length;
|
||||
Array2D<real_t> length;
|
||||
|
||||
// Computational Domain Boundary
|
||||
Array2D<double> comp_dom_bdr;
|
||||
Array2D<real_t> comp_dom_bdr;
|
||||
|
||||
// Domain Boundary
|
||||
Array2D<double> dom_bdr;
|
||||
Array2D<real_t> dom_bdr;
|
||||
|
||||
// Integer Array identifying elements in the PML
|
||||
// 0: in the PML, 1: not in the PML
|
||||
@@ -69,13 +69,13 @@ private:
|
||||
|
||||
public:
|
||||
// Constructor
|
||||
PML(Mesh *mesh_,Array2D<double> length_);
|
||||
PML(Mesh *mesh_,Array2D<real_t> length_);
|
||||
|
||||
// Return Computational Domain Boundary
|
||||
Array2D<double> GetCompDomainBdr() {return comp_dom_bdr;}
|
||||
Array2D<real_t> GetCompDomainBdr() {return comp_dom_bdr;}
|
||||
|
||||
// Return Domain Boundary
|
||||
Array2D<double> GetDomainBdr() {return dom_bdr;}
|
||||
Array2D<real_t> GetDomainBdr() {return dom_bdr;}
|
||||
|
||||
// Return Markers list for elements
|
||||
Array<int> * GetMarkedPMLElements() {return &elems;}
|
||||
@@ -84,7 +84,7 @@ public:
|
||||
void SetAttributes(ParMesh *pmesh);
|
||||
|
||||
// PML complex stretching function
|
||||
void StretchFunction(const Vector &x, vector<complex<double>> &dxs);
|
||||
void StretchFunction(const Vector &x, vector<complex<real_t>> &dxs);
|
||||
};
|
||||
|
||||
// Class for returning the PML coefficients of the bilinear form
|
||||
@@ -105,7 +105,7 @@ public:
|
||||
virtual void Eval(Vector &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
double x[3];
|
||||
real_t x[3];
|
||||
Vector transip(x, 3);
|
||||
T.Transform(ip, transip);
|
||||
K.SetSize(vdim);
|
||||
@@ -113,7 +113,7 @@ public:
|
||||
}
|
||||
};
|
||||
|
||||
void maxwell_solution(const Vector &x, vector<complex<double>> &Eval);
|
||||
void maxwell_solution(const Vector &x, vector<complex<real_t>> &Eval);
|
||||
|
||||
void E_bdr_data_Re(const Vector &x, Vector &E);
|
||||
void E_bdr_data_Im(const Vector &x, Vector &E);
|
||||
@@ -133,15 +133,17 @@ void detJ_inv_JT_J_Re(const Vector &x, PML * pml, Vector & D);
|
||||
void detJ_inv_JT_J_Im(const Vector &x, PML * pml, Vector & D);
|
||||
void detJ_inv_JT_J_abs(const Vector &x, PML * pml, Vector & D);
|
||||
|
||||
Array2D<double> comp_domain_bdr;
|
||||
Array2D<double> domain_bdr;
|
||||
Array2D<real_t> comp_domain_bdr;
|
||||
Array2D<real_t> domain_bdr;
|
||||
|
||||
double mu = 1.0;
|
||||
double epsilon = 1.0;
|
||||
double omega;
|
||||
real_t mu = 1.0;
|
||||
real_t epsilon = 1.0;
|
||||
real_t omega;
|
||||
int dim;
|
||||
bool exact_known = false;
|
||||
|
||||
template <typename T> T pow2(const T &x) { return x*x; }
|
||||
|
||||
enum prob_type
|
||||
{
|
||||
beam, // Wave propagating in a beam-like domain
|
||||
@@ -166,7 +168,7 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 1;
|
||||
int par_ref_levels = 2;
|
||||
int iprob = 4;
|
||||
double freq = 5.0;
|
||||
real_t freq = 5.0;
|
||||
bool herm_conv = true;
|
||||
bool slu_solver = false;
|
||||
bool mumps_solver = false;
|
||||
@@ -275,10 +277,10 @@ int main(int argc, char *argv[])
|
||||
dim = mesh->Dimension();
|
||||
|
||||
// Angular frequency
|
||||
omega = 2.0 * M_PI * freq;
|
||||
omega = real_t(2.0 * M_PI) * freq;
|
||||
|
||||
// Setup PML length
|
||||
Array2D<double> length(dim, 2); length = 0.0;
|
||||
Array2D<real_t> length(dim, 2); length = 0.0;
|
||||
|
||||
// 5. Setup the Cartesian PML region.
|
||||
switch (prob)
|
||||
@@ -357,14 +359,15 @@ int main(int argc, char *argv[])
|
||||
switch (prob)
|
||||
{
|
||||
case lshape:
|
||||
if (center[0] == 1.0 || center[0] == 0.5 || center[1] == 0.5)
|
||||
if (center[0] == 1_r || center[0] == 0.5_r ||
|
||||
center[1] == 0.5_r)
|
||||
{
|
||||
ess_bdr[k - 1] = 1;
|
||||
}
|
||||
break;
|
||||
case fichera:
|
||||
if (center[0] == -1.0 || center[0] == 0.0 ||
|
||||
center[1] == 0.0 || center[2] == 0.0)
|
||||
if (center[0] == -1_r || center[0] == 0_r ||
|
||||
center[1] == 0_r || center[2] == 0_r)
|
||||
{
|
||||
ess_bdr[k - 1] = 1;
|
||||
}
|
||||
@@ -423,8 +426,8 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
ConstantCoefficient muinv(1.0/mu);
|
||||
ConstantCoefficient omeg(-pow(omega, 2) * epsilon);
|
||||
ConstantCoefficient muinv(1_r / mu);
|
||||
ConstantCoefficient omeg(-pow2(omega) * epsilon);
|
||||
RestrictedCoefficient restr_muinv(muinv,attr);
|
||||
RestrictedCoefficient restr_omeg(omeg,attr);
|
||||
|
||||
@@ -520,7 +523,7 @@ int main(int argc, char *argv[])
|
||||
// + omega^2 * epsilon (abs(det(J) * (J^T J)^-1) * E, F)
|
||||
if (pa || (!slu_solver && !mumps_solver && !strumpack_solver))
|
||||
{
|
||||
ConstantCoefficient absomeg(pow(omega, 2) * epsilon);
|
||||
ConstantCoefficient absomeg(pow2(omega) * epsilon);
|
||||
RestrictedCoefficient restr_absomeg(absomeg,attr);
|
||||
|
||||
ParBilinearForm prec(fespace);
|
||||
@@ -551,7 +554,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
std::unique_ptr<Operator> pc_r;
|
||||
std::unique_ptr<Operator> pc_i;
|
||||
int s = (conv == ComplexOperator::HERMITIAN) ? -1.0 : 1.0;
|
||||
int s = (conv == ComplexOperator::HERMITIAN) ? -1 : 1;
|
||||
if (pa)
|
||||
{
|
||||
// Jacobi Smoother
|
||||
@@ -599,14 +602,14 @@ int main(int argc, char *argv[])
|
||||
irs[i] = &(IntRules.Get(i, order_quad));
|
||||
}
|
||||
|
||||
double L2Error_Re = x.real().ComputeL2Error(E_ex_Re, irs,
|
||||
real_t L2Error_Re = x.real().ComputeL2Error(E_ex_Re, irs,
|
||||
pml->GetMarkedPMLElements());
|
||||
double L2Error_Im = x.imag().ComputeL2Error(E_ex_Im, irs,
|
||||
real_t L2Error_Im = x.imag().ComputeL2Error(E_ex_Im, irs,
|
||||
pml->GetMarkedPMLElements());
|
||||
|
||||
ParComplexGridFunction x_gf0(fespace);
|
||||
x_gf0 = 0.0;
|
||||
double norm_E_Re, norm_E_Im;
|
||||
real_t norm_E_Re, norm_E_Im;
|
||||
norm_E_Re = x_gf0.real().ComputeL2Error(E_ex_Re, irs,
|
||||
pml->GetMarkedPMLElements());
|
||||
norm_E_Im = x_gf0.imag().ComputeL2Error(E_ex_Im, irs,
|
||||
@@ -694,11 +697,12 @@ int main(int argc, char *argv[])
|
||||
int i = 0;
|
||||
while (sol_sock)
|
||||
{
|
||||
double t = (double)(i % num_frames) / num_frames;
|
||||
real_t t = (real_t)(i % num_frames) / num_frames;
|
||||
ostringstream oss;
|
||||
oss << "Harmonic Solution (t = " << t << " T)";
|
||||
|
||||
add(cos(2.0*M_PI*t), x.real(), sin(2.0*M_PI*t), x.imag(), x_t);
|
||||
add(cos(real_t(2.0*M_PI)*t), x.real(),
|
||||
sin(real_t(2.0*M_PI)*t), x.imag(), x_t);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock << "solution\n" << *pmesh << x_t
|
||||
<< "window_title '" << oss.str() << "'" << flush;
|
||||
@@ -718,20 +722,20 @@ int main(int argc, char *argv[])
|
||||
void source(const Vector &x, Vector &f)
|
||||
{
|
||||
Vector center(dim);
|
||||
double r = 0.0;
|
||||
real_t r = 0.0;
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
center(i) = 0.5 * (comp_domain_bdr(i, 0) + comp_domain_bdr(i, 1));
|
||||
r += pow(x[i] - center[i], 2.);
|
||||
center(i) = real_t(0.5) * (comp_domain_bdr(i, 0) + comp_domain_bdr(i, 1));
|
||||
r += pow2(x[i] - center[i]);
|
||||
}
|
||||
double n = 5.0 * omega * sqrt(epsilon * mu) / M_PI;
|
||||
double coeff = pow(n, 2) / M_PI;
|
||||
double alpha = -pow(n, 2) * r;
|
||||
real_t n = real_t(5) * omega * sqrt(epsilon * mu) / real_t(M_PI);
|
||||
real_t coeff = pow2(n) / real_t(M_PI);
|
||||
real_t alpha = -pow2(n) * r;
|
||||
f = 0.0;
|
||||
f[0] = coeff * exp(alpha);
|
||||
}
|
||||
|
||||
void maxwell_solution(const Vector &x, vector<complex<double>> &E)
|
||||
void maxwell_solution(const Vector &x, vector<complex<real_t>> &E)
|
||||
{
|
||||
// Initialize
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -739,8 +743,8 @@ void maxwell_solution(const Vector &x, vector<complex<double>> &E)
|
||||
E[i] = 0.0;
|
||||
}
|
||||
|
||||
complex<double> zi = complex<double>(0., 1.);
|
||||
double k = omega * sqrt(epsilon * mu);
|
||||
constexpr complex<real_t> zi = complex<real_t>(0., 1.);
|
||||
real_t k = omega * sqrt(epsilon * mu);
|
||||
switch (prob)
|
||||
{
|
||||
case disc:
|
||||
@@ -755,58 +759,58 @@ void maxwell_solution(const Vector &x, vector<complex<double>> &E)
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
double x0 = x(0) + shift(0);
|
||||
double x1 = x(1) + shift(1);
|
||||
double r = sqrt(x0 * x0 + x1 * x1);
|
||||
double beta = k * r;
|
||||
real_t x0 = x(0) + shift(0);
|
||||
real_t x1 = x(1) + shift(1);
|
||||
real_t r = sqrt(x0 * x0 + x1 * x1);
|
||||
real_t beta = k * r;
|
||||
|
||||
// Bessel functions
|
||||
complex<double> Ho, Ho_r, Ho_rr;
|
||||
Ho = jn(0, beta) + zi * yn(0, beta);
|
||||
Ho_r = -k * (jn(1, beta) + zi * yn(1, beta));
|
||||
Ho_rr = -k * k * (1.0 / beta *
|
||||
(jn(1, beta) + zi * yn(1, beta)) -
|
||||
(jn(2, beta) + zi * yn(2, beta)));
|
||||
complex<real_t> Ho, Ho_r, Ho_rr;
|
||||
Ho = real_t(jn(0, beta)) + zi * real_t(yn(0, beta));
|
||||
Ho_r = -k * (real_t(jn(1, beta)) + zi * real_t(yn(1, beta)));
|
||||
Ho_rr = -k * k * (1_r / beta *
|
||||
(real_t(jn(1, beta)) + zi * real_t(yn(1, beta))) -
|
||||
(real_t(jn(2, beta)) + zi * real_t(yn(2, beta))));
|
||||
|
||||
// First derivatives
|
||||
double r_x = x0 / r;
|
||||
double r_y = x1 / r;
|
||||
double r_xy = -(r_x / r) * r_y;
|
||||
double r_xx = (1.0 / r) * (1.0 - r_x * r_x);
|
||||
real_t r_x = x0 / r;
|
||||
real_t r_y = x1 / r;
|
||||
real_t r_xy = -(r_x / r) * r_y;
|
||||
real_t r_xx = (1_r / r) * (1_r - r_x * r_x);
|
||||
|
||||
complex<double> val, val_xx, val_xy;
|
||||
val = 0.25 * zi * Ho;
|
||||
val_xx = 0.25 * zi * (r_xx * Ho_r + r_x * r_x * Ho_rr);
|
||||
val_xy = 0.25 * zi * (r_xy * Ho_r + r_x * r_y * Ho_rr);
|
||||
complex<real_t> val, val_xx, val_xy;
|
||||
val = real_t(0.25) * zi * Ho;
|
||||
val_xx = real_t(0.25) * zi * (r_xx * Ho_r + r_x * r_x * Ho_rr);
|
||||
val_xy = real_t(0.25) * zi * (r_xy * Ho_r + r_x * r_y * Ho_rr);
|
||||
E[0] = zi / k * (k * k * val + val_xx);
|
||||
E[1] = zi / k * val_xy;
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
double x0 = x(0) + shift(0);
|
||||
double x1 = x(1) + shift(1);
|
||||
double x2 = x(2) + shift(2);
|
||||
double r = sqrt(x0 * x0 + x1 * x1 + x2 * x2);
|
||||
real_t x0 = x(0) + shift(0);
|
||||
real_t x1 = x(1) + shift(1);
|
||||
real_t x2 = x(2) + shift(2);
|
||||
real_t r = sqrt(x0 * x0 + x1 * x1 + x2 * x2);
|
||||
|
||||
double r_x = x0 / r;
|
||||
double r_y = x1 / r;
|
||||
double r_z = x2 / r;
|
||||
double r_xx = (1.0 / r) * (1.0 - r_x * r_x);
|
||||
double r_yx = -(r_y / r) * r_x;
|
||||
double r_zx = -(r_z / r) * r_x;
|
||||
real_t r_x = x0 / r;
|
||||
real_t r_y = x1 / r;
|
||||
real_t r_z = x2 / r;
|
||||
real_t r_xx = (1_r / r) * (1_r - r_x * r_x);
|
||||
real_t r_yx = -(r_y / r) * r_x;
|
||||
real_t r_zx = -(r_z / r) * r_x;
|
||||
|
||||
complex<double> val, val_r, val_rr;
|
||||
complex<real_t> val, val_r, val_rr;
|
||||
val = exp(zi * k * r) / r;
|
||||
val_r = val / r * (zi * k * r - 1.0);
|
||||
val_r = val / r * (zi * k * r - 1_r);
|
||||
val_rr = val / (r * r) * (-k * k * r * r
|
||||
- 2.0 * zi * k * r + 2.0);
|
||||
- real_t(2) * zi * k * r + real_t(2));
|
||||
|
||||
complex<double> val_xx, val_yx, val_zx;
|
||||
complex<real_t> val_xx, val_yx, val_zx;
|
||||
val_xx = val_rr * r_x * r_x + val_r * r_xx;
|
||||
val_yx = val_rr * r_x * r_y + val_r * r_yx;
|
||||
val_zx = val_rr * r_x * r_z + val_r * r_zx;
|
||||
|
||||
complex<double> alpha = zi * k / 4.0 / M_PI / k / k;
|
||||
complex<real_t> alpha = zi * k / real_t(4) / (real_t) M_PI / k / k;
|
||||
E[0] = alpha * (k * k * val + val_xx);
|
||||
E[1] = alpha * val_yx;
|
||||
E[2] = alpha * val_zx;
|
||||
@@ -818,12 +822,13 @@ void maxwell_solution(const Vector &x, vector<complex<double>> &E)
|
||||
// T_10 mode
|
||||
if (dim == 3)
|
||||
{
|
||||
double k10 = sqrt(k * k - M_PI * M_PI);
|
||||
E[1] = -zi * k / M_PI * sin(M_PI*x(2))*exp(zi * k10 * x(0));
|
||||
real_t k10 = sqrt(k * k - real_t(M_PI * M_PI));
|
||||
E[1] = -zi * k / (real_t) M_PI *
|
||||
sin((real_t) M_PI*x(2))*exp(zi * k10 * x(0));
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
E[1] = -zi * k / M_PI * exp(zi * k * x(0));
|
||||
E[1] = -zi * k / (real_t) M_PI * exp(zi * k * x(0));
|
||||
}
|
||||
break;
|
||||
}
|
||||
@@ -834,7 +839,7 @@ void maxwell_solution(const Vector &x, vector<complex<double>> &E)
|
||||
|
||||
void E_exact_Re(const Vector &x, Vector &E)
|
||||
{
|
||||
vector<complex<double>> Eval(E.Size());
|
||||
vector<complex<real_t>> Eval(E.Size());
|
||||
maxwell_solution(x, Eval);
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
@@ -844,7 +849,7 @@ void E_exact_Re(const Vector &x, Vector &E)
|
||||
|
||||
void E_exact_Im(const Vector &x, Vector &E)
|
||||
{
|
||||
vector<complex<double>> Eval(E.Size());
|
||||
vector<complex<real_t>> Eval(E.Size());
|
||||
maxwell_solution(x, Eval);
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
@@ -860,8 +865,8 @@ void E_bdr_data_Re(const Vector &x, Vector &E)
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
// check if in PML
|
||||
if (x(i) - comp_domain_bdr(i, 0) < 0.0 ||
|
||||
x(i) - comp_domain_bdr(i, 1) > 0.0)
|
||||
if (x(i) - comp_domain_bdr(i, 0) < 0_r ||
|
||||
x(i) - comp_domain_bdr(i, 1) > 0_r)
|
||||
{
|
||||
in_pml = true;
|
||||
break;
|
||||
@@ -869,7 +874,7 @@ void E_bdr_data_Re(const Vector &x, Vector &E)
|
||||
}
|
||||
if (!in_pml)
|
||||
{
|
||||
vector<complex<double>> Eval(E.Size());
|
||||
vector<complex<real_t>> Eval(E.Size());
|
||||
maxwell_solution(x, Eval);
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
@@ -887,8 +892,8 @@ void E_bdr_data_Im(const Vector &x, Vector &E)
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
// check if in PML
|
||||
if (x(i) - comp_domain_bdr(i, 0) < 0.0 ||
|
||||
x(i) - comp_domain_bdr(i, 1) > 0.0)
|
||||
if (x(i) - comp_domain_bdr(i, 0) < 0_r ||
|
||||
x(i) - comp_domain_bdr(i, 1) > 0_r)
|
||||
{
|
||||
in_pml = true;
|
||||
break;
|
||||
@@ -896,7 +901,7 @@ void E_bdr_data_Im(const Vector &x, Vector &E)
|
||||
}
|
||||
if (!in_pml)
|
||||
{
|
||||
vector<complex<double>> Eval(E.Size());
|
||||
vector<complex<real_t>> Eval(E.Size());
|
||||
maxwell_solution(x, Eval);
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
@@ -907,8 +912,8 @@ void E_bdr_data_Im(const Vector &x, Vector &E)
|
||||
|
||||
void detJ_JT_J_inv_Re(const Vector &x, PML * pml, Vector & D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det(1.0, 0.0);
|
||||
vector<complex<real_t>> dxs(dim);
|
||||
complex<real_t> det(1.0, 0.0);
|
||||
pml->StretchFunction(x, dxs);
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -918,14 +923,14 @@ void detJ_JT_J_inv_Re(const Vector &x, PML * pml, Vector & D)
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (det / pow(dxs[i], 2)).real();
|
||||
D(i) = (det / pow2(dxs[i])).real();
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_Im(const Vector &x, PML * pml, Vector & D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
vector<complex<real_t>> dxs(dim);
|
||||
complex<real_t> det = 1.0;
|
||||
pml->StretchFunction(x, dxs);
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -935,14 +940,14 @@ void detJ_JT_J_inv_Im(const Vector &x, PML * pml, Vector & D)
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (det / pow(dxs[i], 2)).imag();
|
||||
D(i) = (det / pow2(dxs[i])).imag();
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_JT_J_inv_abs(const Vector &x, PML * pml, Vector & D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
vector<complex<real_t>> dxs(dim);
|
||||
complex<real_t> det = 1.0;
|
||||
pml->StretchFunction(x, dxs);
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -952,14 +957,14 @@ void detJ_JT_J_inv_abs(const Vector &x, PML * pml, Vector & D)
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = abs(det / pow(dxs[i], 2));
|
||||
D(i) = abs(det / pow2(dxs[i]));
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_Re(const Vector &x, PML * pml, Vector & D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det(1.0, 0.0);
|
||||
vector<complex<real_t>> dxs(dim);
|
||||
complex<real_t> det(1.0, 0.0);
|
||||
pml->StretchFunction(x, dxs);
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -970,21 +975,21 @@ void detJ_inv_JT_J_Re(const Vector &x, PML * pml, Vector & D)
|
||||
// in the 2D case the coefficient is scalar 1/det(J)
|
||||
if (dim == 2)
|
||||
{
|
||||
D = (1.0 / det).real();
|
||||
D = (1_r / det).real();
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (pow(dxs[i], 2) / det).real();
|
||||
D(i) = (pow2(dxs[i]) / det).real();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_Im(const Vector &x, PML * pml, Vector & D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
vector<complex<real_t>> dxs(dim);
|
||||
complex<real_t> det = 1.0;
|
||||
pml->StretchFunction(x, dxs);
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -994,21 +999,21 @@ void detJ_inv_JT_J_Im(const Vector &x, PML * pml, Vector & D)
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
D = (1.0 / det).imag();
|
||||
D = (1_r / det).imag();
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = (pow(dxs[i], 2) / det).imag();
|
||||
D(i) = (pow2(dxs[i]) / det).imag();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void detJ_inv_JT_J_abs(const Vector &x, PML * pml, Vector & D)
|
||||
{
|
||||
vector<complex<double>> dxs(dim);
|
||||
complex<double> det = 1.0;
|
||||
vector<complex<real_t>> dxs(dim);
|
||||
complex<real_t> det = 1.0;
|
||||
pml->StretchFunction(x, dxs);
|
||||
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -1018,18 +1023,18 @@ void detJ_inv_JT_J_abs(const Vector &x, PML * pml, Vector & D)
|
||||
|
||||
if (dim == 2)
|
||||
{
|
||||
D = abs(1.0 / det);
|
||||
D = abs(1_r / det);
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
D(i) = abs(pow(dxs[i], 2) / det);
|
||||
D(i) = abs(pow2(dxs[i]) / det);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
PML::PML(Mesh *mesh_, Array2D<double> length_)
|
||||
PML::PML(Mesh *mesh_, Array2D<real_t> length_)
|
||||
: mesh(mesh_), length(length_)
|
||||
{
|
||||
dim = mesh->Dimension();
|
||||
@@ -1081,7 +1086,7 @@ void PML::SetAttributes(ParMesh *pmesh)
|
||||
for (int iv = 0; iv < nrvert; ++iv)
|
||||
{
|
||||
int vert_idx = vertices[iv];
|
||||
double *coords = pmesh->GetVertex(vert_idx);
|
||||
real_t *coords = pmesh->GetVertex(vert_idx);
|
||||
for (int comp = 0; comp < dim; ++comp)
|
||||
{
|
||||
if (coords[comp] > comp_dom_bdr(comp, 1) ||
|
||||
@@ -1102,14 +1107,14 @@ void PML::SetAttributes(ParMesh *pmesh)
|
||||
}
|
||||
|
||||
void PML::StretchFunction(const Vector &x,
|
||||
vector<complex<double>> &dxs)
|
||||
vector<complex<real_t>> &dxs)
|
||||
{
|
||||
complex<double> zi = complex<double>(0., 1.);
|
||||
constexpr complex<real_t> zi = complex<real_t>(0., 1.);
|
||||
|
||||
double n = 2.0;
|
||||
double c = 5.0;
|
||||
double coeff;
|
||||
double k = omega * sqrt(epsilon * mu);
|
||||
real_t n = 2.0;
|
||||
real_t c = 5.0;
|
||||
real_t coeff;
|
||||
real_t k = omega * sqrt(epsilon * mu);
|
||||
|
||||
// Stretch in each direction independently
|
||||
for (int i = 0; i < dim; ++i)
|
||||
@@ -1118,14 +1123,14 @@ void PML::StretchFunction(const Vector &x,
|
||||
if (x(i) >= comp_domain_bdr(i, 1))
|
||||
{
|
||||
coeff = n * c / k / pow(length(i, 1), n);
|
||||
dxs[i] = 1.0 + zi * coeff *
|
||||
abs(pow(x(i) - comp_domain_bdr(i, 1), n - 1.0));
|
||||
dxs[i] = 1_r + zi * coeff *
|
||||
abs(pow(x(i) - comp_domain_bdr(i, 1), n - 1_r));
|
||||
}
|
||||
if (x(i) <= comp_domain_bdr(i, 0))
|
||||
{
|
||||
coeff = n * c / k / pow(length(i, 0), n);
|
||||
dxs[i] = 1.0 + zi * coeff *
|
||||
abs(pow(x(i) - comp_domain_bdr(i, 0), n - 1.0));
|
||||
dxs[i] = 1_r + zi * coeff *
|
||||
abs(pow(x(i) - comp_domain_bdr(i, 0), n - 1_r));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
+32
-32
@@ -63,7 +63,7 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
static double a_ = 0.2;
|
||||
static real_t a_ = 0.2;
|
||||
|
||||
// Normal to hole with boundary attribute 4
|
||||
void n4Vec(const Vector &x, Vector &n) { n = x; n[0] -= 0.5; n /= -n.Norml2(); }
|
||||
@@ -73,25 +73,25 @@ Mesh * GenerateSerialMesh(int ref);
|
||||
// Compute the average value of alpha*n.Grad(sol) + beta*sol over the boundary
|
||||
// attributes marked in bdr_marker. Also computes the L2 norm of
|
||||
// alpha*n.Grad(sol) + beta*sol - gamma over the same boundary.
|
||||
double IntegrateBC(const GridFunction &sol, const Array<int> &bdr_marker,
|
||||
double alpha, double beta, double gamma,
|
||||
double &error);
|
||||
real_t IntegrateBC(const GridFunction &sol, const Array<int> &bdr_marker,
|
||||
real_t alpha, real_t beta, real_t gamma,
|
||||
real_t &error);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command-line options.
|
||||
int ser_ref_levels = 2;
|
||||
int order = 1;
|
||||
double sigma = -1.0;
|
||||
double kappa = -1.0;
|
||||
real_t sigma = -1.0;
|
||||
real_t kappa = -1.0;
|
||||
bool h1 = true;
|
||||
bool visualization = true;
|
||||
|
||||
double mat_val = 1.0;
|
||||
double dbc_val = 0.0;
|
||||
double nbc_val = 1.0;
|
||||
double rbc_a_val = 1.0; // du/dn + a * u = b
|
||||
double rbc_b_val = 1.0;
|
||||
real_t mat_val = 1.0;
|
||||
real_t dbc_val = 0.0;
|
||||
real_t nbc_val = 1.0;
|
||||
real_t rbc_a_val = 1.0; // du/dn + a * u = b
|
||||
real_t rbc_b_val = 1.0;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&h1, "-h1", "--continuous", "-dg", "--discontinuous",
|
||||
@@ -302,7 +302,7 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
// Integrate the solution on the Dirichlet boundary and compare to the
|
||||
// expected value.
|
||||
double error, avg = IntegrateBC(u, dbc_bdr, 0.0, 1.0, dbc_val, error);
|
||||
real_t error, avg = IntegrateBC(u, dbc_bdr, 0.0, 1.0, dbc_val, error);
|
||||
|
||||
bool hom_dbc = (dbc_val == 0.0);
|
||||
error /= hom_dbc ? 1.0 : fabs(dbc_val);
|
||||
@@ -314,7 +314,7 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
// Integrate n.Grad(u) on the inhomogeneous Neumann boundary and compare
|
||||
// to the expected value.
|
||||
double error, avg = IntegrateBC(u, nbc_bdr, 1.0, 0.0, nbc_val, error);
|
||||
real_t error, avg = IntegrateBC(u, nbc_bdr, 1.0, 0.0, nbc_val, error);
|
||||
|
||||
bool hom_nbc = (nbc_val == 0.0);
|
||||
error /= hom_nbc ? 1.0 : fabs(nbc_val);
|
||||
@@ -330,7 +330,7 @@ int main(int argc, char *argv[])
|
||||
nbc0_bdr = 0;
|
||||
nbc0_bdr[3] = 1;
|
||||
|
||||
double error, avg = IntegrateBC(u, nbc0_bdr, 1.0, 0.0, 0.0, error);
|
||||
real_t error, avg = IntegrateBC(u, nbc0_bdr, 1.0, 0.0, 0.0, error);
|
||||
|
||||
bool hom_nbc = true;
|
||||
mfem::out << "Average of n.Grad(u) on Gamma_nbc0:\t"
|
||||
@@ -341,8 +341,8 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
// Integrate n.Grad(u) + a * u on the Robin boundary and compare to the
|
||||
// expected value.
|
||||
double error;
|
||||
double avg = IntegrateBC(u, rbc_bdr, 1.0, rbc_a_val, rbc_b_val, error);
|
||||
real_t error;
|
||||
real_t avg = IntegrateBC(u, rbc_bdr, 1.0, rbc_a_val, rbc_b_val, error);
|
||||
|
||||
bool hom_rbc = (rbc_b_val == 0.0);
|
||||
error /= hom_rbc ? 1.0 : fabs(rbc_b_val);
|
||||
@@ -383,22 +383,22 @@ int main(int argc, char *argv[])
|
||||
return 0;
|
||||
}
|
||||
|
||||
void quad_trans(double u, double v, double &x, double &y, bool log = false)
|
||||
void quad_trans(real_t u, real_t v, real_t &x, real_t &y, bool log = false)
|
||||
{
|
||||
double a = a_; // Radius of disc
|
||||
real_t a = a_; // Radius of disc
|
||||
|
||||
double d = 4.0 * a * (M_SQRT2 - 2.0 * a) * (1.0 - 2.0 * v);
|
||||
real_t d = 4.0 * a * (M_SQRT2 - 2.0 * a) * (1.0 - 2.0 * v);
|
||||
|
||||
double v0 = (1.0 + M_SQRT2) * (M_SQRT2 * a - 2.0 * v) *
|
||||
real_t v0 = (1.0 + M_SQRT2) * (M_SQRT2 * a - 2.0 * v) *
|
||||
((4.0 - 3 * M_SQRT2) * a +
|
||||
(8.0 * (M_SQRT2 - 1.0) * a - 2.0) * v) / d;
|
||||
|
||||
double r = 2.0 * ((M_SQRT2 - 1.0) * a * a * (1.0 - 4.0 *v) +
|
||||
real_t r = 2.0 * ((M_SQRT2 - 1.0) * a * a * (1.0 - 4.0 *v) +
|
||||
2.0 * (1.0 + M_SQRT2 *
|
||||
(1.0 + 2.0 * (2.0 * a - M_SQRT2 - 1.0) * a)) * v * v
|
||||
) / d;
|
||||
|
||||
double t = asin(v / r) * u / v;
|
||||
real_t t = asin(v / r) * u / v;
|
||||
if (log)
|
||||
{
|
||||
mfem::out << "u, v, r, v0, t "
|
||||
@@ -411,7 +411,7 @@ void quad_trans(double u, double v, double &x, double &y, bool log = false)
|
||||
|
||||
void trans(const Vector &u, Vector &x)
|
||||
{
|
||||
double tol = 1e-4;
|
||||
real_t tol = 1e-4;
|
||||
|
||||
if (u[1] > 0.5 - tol || u[1] < -0.5 + tol)
|
||||
{
|
||||
@@ -542,8 +542,8 @@ Mesh * GenerateSerialMesh(int ref)
|
||||
vi[0] = o + 3; vi[1] = o + 4; mesh->AddBdrSegment(vi, 3 + i);
|
||||
}
|
||||
|
||||
double d[2];
|
||||
double a = a_ / M_SQRT2;
|
||||
real_t d[2];
|
||||
real_t a = a_ / M_SQRT2;
|
||||
|
||||
d[0] = -1.0; d[1] = -0.5; mesh->AddVertex(d);
|
||||
d[0] = -1.0; d[1] = 0.0; mesh->AddVertex(d);
|
||||
@@ -636,12 +636,12 @@ Mesh * GenerateSerialMesh(int ref)
|
||||
return mesh;
|
||||
}
|
||||
|
||||
double IntegrateBC(const GridFunction &x, const Array<int> &bdr,
|
||||
double alpha, double beta, double gamma,
|
||||
double &error)
|
||||
real_t IntegrateBC(const GridFunction &x, const Array<int> &bdr,
|
||||
real_t alpha, real_t beta, real_t gamma,
|
||||
real_t &error)
|
||||
{
|
||||
double nrm = 0.0;
|
||||
double avg = 0.0;
|
||||
real_t nrm = 0.0;
|
||||
real_t avg = 0.0;
|
||||
error = 0.0;
|
||||
|
||||
const bool a_is_zero = alpha == 0.0;
|
||||
@@ -683,8 +683,8 @@ double IntegrateBC(const GridFunction &x, const Array<int> &bdr,
|
||||
IntegrationPoint eip;
|
||||
FTr->Loc1.Transform(ip, eip);
|
||||
FTr->Face->SetIntPoint(&ip);
|
||||
double face_weight = FTr->Face->Weight();
|
||||
double val = 0.0;
|
||||
real_t face_weight = FTr->Face->Weight();
|
||||
real_t val = 0.0;
|
||||
if (!a_is_zero)
|
||||
{
|
||||
FTr->Elem1->SetIntPoint(&eip);
|
||||
|
||||
+38
-37
@@ -63,7 +63,7 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
static double a_ = 0.2;
|
||||
static real_t a_ = 0.2;
|
||||
|
||||
// Normal to hole with boundary attribute 4
|
||||
void n4Vec(const Vector &x, Vector &n) { n = x; n[0] -= 0.5; n /= -n.Norml2(); }
|
||||
@@ -73,9 +73,9 @@ Mesh * GenerateSerialMesh(int ref);
|
||||
// Compute the average value of alpha*n.Grad(sol) + beta*sol over the boundary
|
||||
// attributes marked in bdr_marker. Also computes the L2 norm of
|
||||
// alpha*n.Grad(sol) + beta*sol - gamma over the same boundary.
|
||||
double IntegrateBC(const ParGridFunction &sol, const Array<int> &bdr_marker,
|
||||
double alpha, double beta, double gamma,
|
||||
double &error);
|
||||
real_t IntegrateBC(const ParGridFunction &sol, const Array<int> &bdr_marker,
|
||||
real_t alpha, real_t beta, real_t gamma,
|
||||
real_t &error);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -88,16 +88,16 @@ int main(int argc, char *argv[])
|
||||
int ser_ref_levels = 2;
|
||||
int par_ref_levels = 1;
|
||||
int order = 1;
|
||||
double sigma = -1.0;
|
||||
double kappa = -1.0;
|
||||
real_t sigma = -1.0;
|
||||
real_t kappa = -1.0;
|
||||
bool h1 = true;
|
||||
bool visualization = true;
|
||||
|
||||
double mat_val = 1.0;
|
||||
double dbc_val = 0.0;
|
||||
double nbc_val = 1.0;
|
||||
double rbc_a_val = 1.0; // du/dn + a * u = b
|
||||
double rbc_b_val = 1.0;
|
||||
real_t mat_val = 1.0;
|
||||
real_t dbc_val = 0.0;
|
||||
real_t nbc_val = 1.0;
|
||||
real_t rbc_a_val = 1.0; // du/dn + a * u = b
|
||||
real_t rbc_b_val = 1.0;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&h1, "-h1", "--continuous", "-dg", "--discontinuous",
|
||||
@@ -322,7 +322,7 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
// Integrate the solution on the Dirichlet boundary and compare to the
|
||||
// expected value.
|
||||
double error, avg = IntegrateBC(u, dbc_bdr, 0.0, 1.0, dbc_val, error);
|
||||
real_t error, avg = IntegrateBC(u, dbc_bdr, 0.0, 1.0, dbc_val, error);
|
||||
|
||||
bool hom_dbc = (dbc_val == 0.0);
|
||||
error /= hom_dbc ? 1.0 : fabs(dbc_val);
|
||||
@@ -334,7 +334,7 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
// Integrate n.Grad(u) on the inhomogeneous Neumann boundary and compare
|
||||
// to the expected value.
|
||||
double error, avg = IntegrateBC(u, nbc_bdr, 1.0, 0.0, nbc_val, error);
|
||||
real_t error, avg = IntegrateBC(u, nbc_bdr, 1.0, 0.0, nbc_val, error);
|
||||
|
||||
bool hom_nbc = (nbc_val == 0.0);
|
||||
error /= hom_nbc ? 1.0 : fabs(nbc_val);
|
||||
@@ -350,7 +350,7 @@ int main(int argc, char *argv[])
|
||||
nbc0_bdr = 0;
|
||||
nbc0_bdr[3] = 1;
|
||||
|
||||
double error, avg = IntegrateBC(u, nbc0_bdr, 1.0, 0.0, 0.0, error);
|
||||
real_t error, avg = IntegrateBC(u, nbc0_bdr, 1.0, 0.0, 0.0, error);
|
||||
|
||||
bool hom_nbc = true;
|
||||
mfem::out << "Average of n.Grad(u) on Gamma_nbc0:\t"
|
||||
@@ -361,7 +361,7 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
// Integrate n.Grad(u) + a * u on the Robin boundary and compare to the
|
||||
// expected value.
|
||||
double error, avg = IntegrateBC(u, rbc_bdr, 1.0, rbc_a_val, rbc_b_val,
|
||||
real_t error, avg = IntegrateBC(u, rbc_bdr, 1.0, rbc_a_val, rbc_b_val,
|
||||
error);
|
||||
|
||||
bool hom_rbc = (rbc_b_val == 0.0);
|
||||
@@ -409,22 +409,22 @@ int main(int argc, char *argv[])
|
||||
return 0;
|
||||
}
|
||||
|
||||
void quad_trans(double u, double v, double &x, double &y, bool log = false)
|
||||
void quad_trans(real_t u, real_t v, real_t &x, real_t &y, bool log = false)
|
||||
{
|
||||
double a = a_; // Radius of disc
|
||||
real_t a = a_; // Radius of disc
|
||||
|
||||
double d = 4.0 * a * (M_SQRT2 - 2.0 * a) * (1.0 - 2.0 * v);
|
||||
real_t d = 4.0 * a * (M_SQRT2 - 2.0 * a) * (1.0 - 2.0 * v);
|
||||
|
||||
double v0 = (1.0 + M_SQRT2) * (M_SQRT2 * a - 2.0 * v) *
|
||||
real_t v0 = (1.0 + M_SQRT2) * (M_SQRT2 * a - 2.0 * v) *
|
||||
((4.0 - 3 * M_SQRT2) * a +
|
||||
(8.0 * (M_SQRT2 - 1.0) * a - 2.0) * v) / d;
|
||||
|
||||
double r = 2.0 * ((M_SQRT2 - 1.0) * a * a * (1.0 - 4.0 *v) +
|
||||
real_t r = 2.0 * ((M_SQRT2 - 1.0) * a * a * (1.0 - 4.0 *v) +
|
||||
2.0 * (1.0 + M_SQRT2 *
|
||||
(1.0 + 2.0 * (2.0 * a - M_SQRT2 - 1.0) * a)) * v * v
|
||||
) / d;
|
||||
|
||||
double t = asin(v / r) * u / v;
|
||||
real_t t = asin(v / r) * u / v;
|
||||
if (log)
|
||||
{
|
||||
mfem::out << "u, v, r, v0, t "
|
||||
@@ -437,7 +437,7 @@ void quad_trans(double u, double v, double &x, double &y, bool log = false)
|
||||
|
||||
void trans(const Vector &u, Vector &x)
|
||||
{
|
||||
double tol = 1e-4;
|
||||
real_t tol = 1e-4;
|
||||
|
||||
if (u[1] > 0.5 - tol || u[1] < -0.5 + tol)
|
||||
{
|
||||
@@ -568,8 +568,8 @@ Mesh * GenerateSerialMesh(int ref)
|
||||
vi[0] = o + 3; vi[1] = o + 4; mesh->AddBdrSegment(vi, 3 + i);
|
||||
}
|
||||
|
||||
double d[2];
|
||||
double a = a_ / M_SQRT2;
|
||||
real_t d[2];
|
||||
real_t a = a_ / M_SQRT2;
|
||||
|
||||
d[0] = -1.0; d[1] = -0.5; mesh->AddVertex(d);
|
||||
d[0] = -1.0; d[1] = 0.0; mesh->AddVertex(d);
|
||||
@@ -662,14 +662,14 @@ Mesh * GenerateSerialMesh(int ref)
|
||||
return mesh;
|
||||
}
|
||||
|
||||
double IntegrateBC(const ParGridFunction &x, const Array<int> &bdr,
|
||||
double alpha, double beta, double gamma,
|
||||
double &glb_err)
|
||||
real_t IntegrateBC(const ParGridFunction &x, const Array<int> &bdr,
|
||||
real_t alpha, real_t beta, real_t gamma,
|
||||
real_t &glb_err)
|
||||
{
|
||||
double loc_vals[3];
|
||||
double &nrm = loc_vals[0];
|
||||
double &avg = loc_vals[1];
|
||||
double &error = loc_vals[2];
|
||||
real_t loc_vals[3];
|
||||
real_t &nrm = loc_vals[0];
|
||||
real_t &avg = loc_vals[1];
|
||||
real_t &error = loc_vals[2];
|
||||
|
||||
nrm = 0.0;
|
||||
avg = 0.0;
|
||||
@@ -714,8 +714,8 @@ double IntegrateBC(const ParGridFunction &x, const Array<int> &bdr,
|
||||
IntegrationPoint eip;
|
||||
FTr->Loc1.Transform(ip, eip);
|
||||
FTr->Face->SetIntPoint(&ip);
|
||||
double face_weight = FTr->Face->Weight();
|
||||
double val = 0.0;
|
||||
real_t face_weight = FTr->Face->Weight();
|
||||
real_t val = 0.0;
|
||||
if (!a_is_zero)
|
||||
{
|
||||
FTr->Elem1->SetIntPoint(&eip);
|
||||
@@ -741,11 +741,12 @@ double IntegrateBC(const ParGridFunction &x, const Array<int> &bdr,
|
||||
}
|
||||
}
|
||||
|
||||
double glb_vals[3];
|
||||
MPI_Allreduce(loc_vals, glb_vals, 3, MPI_DOUBLE, MPI_SUM, fes.GetComm());
|
||||
real_t glb_vals[3];
|
||||
MPI_Allreduce(loc_vals, glb_vals, 3, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, fes.GetComm());
|
||||
|
||||
double glb_nrm = glb_vals[0];
|
||||
double glb_avg = glb_vals[1];
|
||||
real_t glb_nrm = glb_vals[0];
|
||||
real_t glb_avg = glb_vals[1];
|
||||
glb_err = glb_vals[2];
|
||||
|
||||
// Normalize by the length of the boundary
|
||||
|
||||
+3
-3
@@ -35,7 +35,7 @@ using namespace mfem;
|
||||
// Return a mesh with a single element with vertices (0, 0), (1, 0), (1, 1),
|
||||
// (offset, 1) to demonstrate boundary conditions on a surface that is not
|
||||
// axis-aligned.
|
||||
Mesh * build_trapezoid_mesh(double offset)
|
||||
Mesh * build_trapezoid_mesh(real_t offset)
|
||||
{
|
||||
MFEM_VERIFY(offset < 0.9, "offset is too large!");
|
||||
|
||||
@@ -45,7 +45,7 @@ Mesh * build_trapezoid_mesh(double offset)
|
||||
Mesh * mesh = new Mesh(dimension, nvt, 1, nbe);
|
||||
|
||||
// vertices
|
||||
double vc[dimension];
|
||||
real_t vc[dimension];
|
||||
vc[0] = 0.0; vc[1] = 0.0;
|
||||
mesh->AddVertex(vc);
|
||||
vc[0] = 1.0; vc[1] = 0.0;
|
||||
@@ -81,7 +81,7 @@ int main(int argc, char *argv[])
|
||||
// 1. Parse command-line options.
|
||||
int order = 1;
|
||||
bool visualization = 1;
|
||||
double offset = 0.3;
|
||||
real_t offset = 0.3;
|
||||
bool visit = false;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
|
||||
+5
-5
@@ -38,7 +38,7 @@ using namespace mfem;
|
||||
// Return a mesh with a single element with vertices (0, 0), (1, 0), (1, 1),
|
||||
// (offset, 1) to demonstrate boundary conditions on a surface that is not
|
||||
// axis-aligned.
|
||||
Mesh * build_trapezoid_mesh(double offset)
|
||||
Mesh * build_trapezoid_mesh(real_t offset)
|
||||
{
|
||||
MFEM_VERIFY(offset < 0.9, "offset is too large!");
|
||||
|
||||
@@ -48,7 +48,7 @@ Mesh * build_trapezoid_mesh(double offset)
|
||||
Mesh * mesh = new Mesh(dimension, nvt, 1, nbe);
|
||||
|
||||
// vertices
|
||||
double vc[dimension];
|
||||
real_t vc[dimension];
|
||||
vc[0] = 0.0; vc[1] = 0.0;
|
||||
mesh->AddVertex(vc);
|
||||
vc[0] = 1.0; vc[1] = 0.0;
|
||||
@@ -84,7 +84,7 @@ int main(int argc, char *argv[])
|
||||
#ifdef HYPRE_USING_GPU
|
||||
cout << "\nAs of mfem-4.3 and hypre-2.22.0 (July 2021) this example\n"
|
||||
<< "is NOT supported with the GPU version of hypre.\n\n";
|
||||
return 242;
|
||||
return MFEM_SKIP_RETURN_VALUE;
|
||||
#endif
|
||||
|
||||
// 1. Initialize MPI and HYPRE.
|
||||
@@ -97,9 +97,9 @@ int main(int argc, char *argv[])
|
||||
int order = 1;
|
||||
bool visualization = 1;
|
||||
bool reorder_space = false;
|
||||
double offset = 0.3;
|
||||
real_t offset = 0.3;
|
||||
bool visit = false;
|
||||
double penalty = 0.0;
|
||||
real_t penalty = 0.0;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
|
||||
+6
-6
@@ -34,7 +34,7 @@ void trans(const Vector &x, Vector &r);
|
||||
|
||||
void sigmaFunc(const Vector &x, DenseMatrix &s);
|
||||
|
||||
double uExact(const Vector &x)
|
||||
real_t uExact(const Vector &x)
|
||||
{
|
||||
return (0.25 * (2.0 + x[0]) - x[2]) * (x[2] + 0.25 * (2.0 + x[0]));
|
||||
}
|
||||
@@ -167,7 +167,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 13. Compute error in the solution and its flux
|
||||
FunctionCoefficient uCoef(uExact);
|
||||
double error = x.ComputeL2Error(uCoef);
|
||||
real_t error = x.ComputeL2Error(uCoef);
|
||||
|
||||
cout << "|u - u_h|_2 = " << error << endl;
|
||||
|
||||
@@ -176,7 +176,7 @@ int main(int argc, char *argv[])
|
||||
x.ComputeFlux(*integ, flux); flux *= -1.0;
|
||||
|
||||
VectorFunctionCoefficient fluxCoef(3, fluxExact);
|
||||
double flux_err = flux.ComputeL2Error(fluxCoef);
|
||||
real_t flux_err = flux.ComputeL2Error(fluxCoef);
|
||||
|
||||
cout << "|f - f_h|_2 = " << flux_err << endl;
|
||||
|
||||
@@ -304,8 +304,8 @@ void trans(const Vector &x, Vector &r)
|
||||
{
|
||||
r.SetSize(3);
|
||||
|
||||
double tol = 1e-6;
|
||||
double theta = 0.0;
|
||||
real_t tol = 1e-6;
|
||||
real_t theta = 0.0;
|
||||
if (fabs(x[1] + 1.0) < tol)
|
||||
{
|
||||
theta = 0.25 * M_PI * (x[0] - 2.0);
|
||||
@@ -337,7 +337,7 @@ void trans(const Vector &x, Vector &r)
|
||||
void sigmaFunc(const Vector &x, DenseMatrix &s)
|
||||
{
|
||||
s.SetSize(3);
|
||||
double a = 17.0 - 2.0 * x[0] * (1.0 + x[0]);
|
||||
real_t a = 17.0 - 2.0 * x[0] * (1.0 + x[0]);
|
||||
s(0,0) = 0.5 + x[0] * x[0] * (8.0 / a - 0.5);
|
||||
s(0,1) = x[0] * x[1] * (8.0 / a - 0.5);
|
||||
s(0,2) = 0.0;
|
||||
|
||||
+6
-6
@@ -34,7 +34,7 @@ void trans(const Vector &x, Vector &r);
|
||||
|
||||
void sigmaFunc(const Vector &x, DenseMatrix &s);
|
||||
|
||||
double uExact(const Vector &x)
|
||||
real_t uExact(const Vector &x)
|
||||
{
|
||||
return (0.25 * (2.0 + x[0]) - x[2]) * (x[2] + 0.25 * (2.0 + x[0]));
|
||||
}
|
||||
@@ -201,7 +201,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 15. Compute error in the solution and its flux
|
||||
FunctionCoefficient uCoef(uExact);
|
||||
double error = x.ComputeL2Error(uCoef);
|
||||
real_t error = x.ComputeL2Error(uCoef);
|
||||
|
||||
if (myid == 0) { cout << "|u - u_h|_2 = " << error << endl; }
|
||||
|
||||
@@ -210,7 +210,7 @@ int main(int argc, char *argv[])
|
||||
x.ComputeFlux(*integ, flux); flux *= -1.0;
|
||||
|
||||
VectorFunctionCoefficient fluxCoef(3, fluxExact);
|
||||
double flux_err = flux.ComputeL2Error(fluxCoef);
|
||||
real_t flux_err = flux.ComputeL2Error(fluxCoef);
|
||||
|
||||
if (myid == 0) { cout << "|f - f_h|_2 = " << flux_err << endl; }
|
||||
|
||||
@@ -349,8 +349,8 @@ void trans(const Vector &x, Vector &r)
|
||||
{
|
||||
r.SetSize(3);
|
||||
|
||||
double tol = 1e-6;
|
||||
double theta = 0.0;
|
||||
real_t tol = 1e-6;
|
||||
real_t theta = 0.0;
|
||||
if (fabs(x[1] + 1.0) < tol)
|
||||
{
|
||||
theta = 0.25 * M_PI * (x[0] - 2.0);
|
||||
@@ -382,7 +382,7 @@ void trans(const Vector &x, Vector &r)
|
||||
void sigmaFunc(const Vector &x, DenseMatrix &s)
|
||||
{
|
||||
s.SetSize(3);
|
||||
double a = 17.0 - 2.0 * x[0] * (1.0 + x[0]);
|
||||
real_t a = 17.0 - 2.0 * x[0] * (1.0 + x[0]);
|
||||
s(0,0) = 0.5 + x[0] * x[0] * (8.0 / a - 0.5);
|
||||
s(0,1) = x[0] * x[1] * (8.0 / a - 0.5);
|
||||
s(0,2) = 0.0;
|
||||
|
||||
+1
-1
@@ -53,7 +53,7 @@ using namespace mfem;
|
||||
// Exact solution, E, and r.h.s., f. See below for implementation.
|
||||
void E_exact(const Vector &, Vector &);
|
||||
void f_exact(const Vector &, Vector &);
|
||||
double freq = 1.0, kappa;
|
||||
real_t freq = 1.0, kappa;
|
||||
int dim;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
|
||||
+14
-14
@@ -42,9 +42,9 @@ using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
// Piecewise-affine function which is sometimes mesh-conforming
|
||||
double affine_function(const Vector &p)
|
||||
real_t affine_function(const Vector &p)
|
||||
{
|
||||
double x = p(0), y = p(1);
|
||||
real_t x = p(0), y = p(1);
|
||||
if (x < 0.0)
|
||||
{
|
||||
return 1.0 + x + y;
|
||||
@@ -56,7 +56,7 @@ double affine_function(const Vector &p)
|
||||
}
|
||||
|
||||
// Piecewise-constant function which is never mesh-conforming
|
||||
double jump_function(const Vector &p)
|
||||
real_t jump_function(const Vector &p)
|
||||
{
|
||||
if (p.Normlp(2.0) > 0.4 && p.Normlp(2.0) < 0.6)
|
||||
{
|
||||
@@ -70,17 +70,17 @@ double jump_function(const Vector &p)
|
||||
|
||||
// Singular function derived from the Laplacian of the "steep wavefront" problem
|
||||
// in [2].
|
||||
double singular_function(const Vector &p)
|
||||
real_t singular_function(const Vector &p)
|
||||
{
|
||||
double x = p(0), y = p(1);
|
||||
double alpha = 1000.0;
|
||||
double xc = 0.75, yc = 0.5;
|
||||
double r0 = 0.7;
|
||||
double r = sqrt(pow(x - xc,2.0) + pow(y - yc,2.0));
|
||||
double num = - ( alpha - pow(alpha,3) * (pow(r,2) - pow(r0,2)) );
|
||||
double denom = pow(r * ( pow(alpha,2) * pow(r0,2) + pow(alpha,2) * pow(r,2) \
|
||||
real_t x = p(0), y = p(1);
|
||||
real_t alpha = 1000.0;
|
||||
real_t xc = 0.75, yc = 0.5;
|
||||
real_t r0 = 0.7;
|
||||
real_t r = sqrt(pow(x - xc,2.0) + pow(y - yc,2.0));
|
||||
real_t num = - ( alpha - pow(alpha,3) * (pow(r,2) - pow(r0,2)) );
|
||||
real_t denom = pow(r * ( pow(alpha,2) * pow(r0,2) + pow(alpha,2) * pow(r,2) \
|
||||
- 2 * pow(alpha,2) * r0 * r + 1.0 ),2);
|
||||
denom = max(denom,1e-8);
|
||||
denom = std::max(denom, (real_t) 1.0e-8);
|
||||
return num / denom;
|
||||
}
|
||||
|
||||
@@ -91,9 +91,9 @@ int main(int argc, char *argv[])
|
||||
int order = 1;
|
||||
int nc_limit = 1;
|
||||
int max_elems = 100*1000;
|
||||
double double_max_elems = double(max_elems);
|
||||
real_t double_max_elems = real_t(max_elems);
|
||||
bool visualization = true;
|
||||
double osc_threshold = 1e-3;
|
||||
real_t osc_threshold = 1e-3;
|
||||
int enriched_order = 5;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
|
||||
+15
-15
@@ -42,9 +42,9 @@ using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
// Piecewise-affine function which is sometimes mesh-conforming
|
||||
double affine_function(const Vector &p)
|
||||
real_t affine_function(const Vector &p)
|
||||
{
|
||||
double x = p(0), y = p(1);
|
||||
real_t x = p(0), y = p(1);
|
||||
if (x < 0.0)
|
||||
{
|
||||
return 1.0 + x + y;
|
||||
@@ -56,7 +56,7 @@ double affine_function(const Vector &p)
|
||||
}
|
||||
|
||||
// Piecewise-constant function which is never mesh-conforming
|
||||
double jump_function(const Vector &p)
|
||||
real_t jump_function(const Vector &p)
|
||||
{
|
||||
if (p.Normlp(2.0) > 0.4 && p.Normlp(2.0) < 0.6)
|
||||
{
|
||||
@@ -70,17 +70,17 @@ double jump_function(const Vector &p)
|
||||
|
||||
// Singular function derived from the Laplacian of the "steep wavefront" problem
|
||||
// in [2].
|
||||
double singular_function(const Vector &p)
|
||||
real_t singular_function(const Vector &p)
|
||||
{
|
||||
double x = p(0), y = p(1);
|
||||
double alpha = 1000.0;
|
||||
double xc = 0.75, yc = 0.5;
|
||||
double r0 = 0.7;
|
||||
double r = sqrt(pow(x - xc,2.0) + pow(y - yc,2.0));
|
||||
double num = - ( alpha - pow(alpha,3) * (pow(r,2) - pow(r0,2)) );
|
||||
double denom = pow(r * ( pow(alpha,2) * pow(r0,2) + pow(alpha,2) * pow(r,2) \
|
||||
real_t x = p(0), y = p(1);
|
||||
real_t alpha = 1000.0;
|
||||
real_t xc = 0.75, yc = 0.5;
|
||||
real_t r0 = 0.7;
|
||||
real_t r = sqrt(pow(x - xc,2.0) + pow(y - yc,2.0));
|
||||
real_t num = - ( alpha - pow(alpha,3) * (pow(r,2) - pow(r0,2)) );
|
||||
real_t denom = pow(r * ( pow(alpha,2) * pow(r0,2) + pow(alpha,2) * pow(r,2) \
|
||||
- 2 * pow(alpha,2) * r0 * r + 1.0 ),2);
|
||||
denom = max(denom,1e-8);
|
||||
denom = std::max(denom, (real_t) 1.0e-8);
|
||||
return num / denom;
|
||||
}
|
||||
|
||||
@@ -97,10 +97,10 @@ int main(int argc, char *argv[])
|
||||
int order = 1;
|
||||
int nc_limit = 1;
|
||||
int max_elems = 1e5;
|
||||
double double_max_elems = double(max_elems);
|
||||
real_t double_max_elems = real_t(max_elems);
|
||||
bool visualization = true;
|
||||
bool nc_simplices = true;
|
||||
double osc_threshold = 1e-3;
|
||||
real_t osc_threshold = 1e-3;
|
||||
int enriched_order = 5;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
@@ -199,7 +199,7 @@ int main(int argc, char *argv[])
|
||||
coeffrefiner.PreprocessMesh(pmesh);
|
||||
|
||||
int globalNE = pmesh.GetGlobalNE();
|
||||
double osc = coeffrefiner.GetOsc();
|
||||
real_t osc = coeffrefiner.GetOsc();
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "\n";
|
||||
|
||||
+28
-28
@@ -39,7 +39,7 @@ using namespace mfem;
|
||||
void E_exact(const Vector &, Vector &);
|
||||
void CurlE_exact(const Vector &, Vector &);
|
||||
void f_exact(const Vector &, Vector &);
|
||||
double freq = 1.0, kappa;
|
||||
real_t freq = 1.0, kappa;
|
||||
int dim;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
@@ -177,7 +177,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 13. Compute and print the H(Curl) norm of the error.
|
||||
{
|
||||
double error = sol.ComputeHCurlError(&E, &CurlE);
|
||||
real_t error = sol.ComputeHCurlError(&E, &CurlE);
|
||||
cout << "\n|| E_h - E ||_{H(Curl)} = " << error << '\n' << endl;
|
||||
}
|
||||
|
||||
@@ -376,8 +376,8 @@ void CurlE_exact(const Vector &x, Vector &dE)
|
||||
{
|
||||
if (dim == 1)
|
||||
{
|
||||
double c4 = cos(kappa * x(0) + 0.4 * M_PI);
|
||||
double c9 = cos(kappa * x(0) + 0.9 * M_PI);
|
||||
real_t c4 = cos(kappa * x(0) + 0.4 * M_PI);
|
||||
real_t c9 = cos(kappa * x(0) + 0.9 * M_PI);
|
||||
|
||||
dE(0) = 0.0;
|
||||
dE(1) = -1.3 * c9;
|
||||
@@ -386,9 +386,9 @@ void CurlE_exact(const Vector &x, Vector &dE)
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
double c0 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
double c4 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
double c9 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
real_t c0 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
real_t c4 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
real_t c9 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
|
||||
dE(0) = 1.3 * c9;
|
||||
dE(1) = -1.3 * c9;
|
||||
@@ -397,13 +397,13 @@ void CurlE_exact(const Vector &x, Vector &dE)
|
||||
}
|
||||
else
|
||||
{
|
||||
double s0 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
double c0 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
double s4 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
double c4 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
double c9 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
double sk = sin(kappa * x(2));
|
||||
double ck = cos(kappa * x(2));
|
||||
real_t s0 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
real_t c0 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
real_t s4 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
real_t c4 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
real_t c9 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
real_t sk = sin(kappa * x(2));
|
||||
real_t ck = cos(kappa * x(2));
|
||||
|
||||
dE(0) = 1.2 * s4 * sk + 1.3 * M_SQRT1_2 * c9 * ck;
|
||||
dE(1) = -1.1 * s0 * sk - 1.3 * M_SQRT1_2 * c9 * ck;
|
||||
@@ -416,9 +416,9 @@ void f_exact(const Vector &x, Vector &f)
|
||||
{
|
||||
if (dim == 1)
|
||||
{
|
||||
double s0 = sin(kappa * x(0) + 0.0 * M_PI);
|
||||
double s4 = sin(kappa * x(0) + 0.4 * M_PI);
|
||||
double s9 = sin(kappa * x(0) + 0.9 * M_PI);
|
||||
real_t s0 = sin(kappa * x(0) + 0.0 * M_PI);
|
||||
real_t s4 = sin(kappa * x(0) + 0.4 * M_PI);
|
||||
real_t s9 = sin(kappa * x(0) + 0.9 * M_PI);
|
||||
|
||||
f(0) = 2.2 * s0 + 1.2 * M_SQRT1_2 * s4;
|
||||
f(1) = 1.2 * (2.0 + kappa * kappa) * s4 +
|
||||
@@ -427,9 +427,9 @@ void f_exact(const Vector &x, Vector &f)
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
double s0 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
double s4 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
double s9 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
real_t s0 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
real_t s4 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
real_t s9 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
|
||||
f(0) = 0.55 * (4.0 + kappa * kappa) * s0 +
|
||||
0.6 * (M_SQRT2 - kappa * kappa) * s4;
|
||||
@@ -440,14 +440,14 @@ void f_exact(const Vector &x, Vector &f)
|
||||
}
|
||||
else
|
||||
{
|
||||
double s0 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
double c0 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
double s4 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
double c4 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
double s9 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
double c9 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
double sk = sin(kappa * x(2));
|
||||
double ck = cos(kappa * x(2));
|
||||
real_t s0 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
real_t c0 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
real_t s4 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
real_t c4 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
real_t s9 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
real_t c9 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
real_t sk = sin(kappa * x(2));
|
||||
real_t ck = cos(kappa * x(2));
|
||||
|
||||
f(0) = 0.55 * (4.0 + 3.0 * kappa * kappa) * s0 * ck +
|
||||
0.6 * (M_SQRT2 - kappa * kappa) * s4 * ck -
|
||||
|
||||
+28
-28
@@ -39,7 +39,7 @@ using namespace mfem;
|
||||
void E_exact(const Vector &, Vector &);
|
||||
void CurlE_exact(const Vector &, Vector &);
|
||||
void f_exact(const Vector &, Vector &);
|
||||
double freq = 1.0, kappa;
|
||||
real_t freq = 1.0, kappa;
|
||||
int dim;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
@@ -224,7 +224,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 14. Compute and print the H(Curl) norm of the error.
|
||||
{
|
||||
double error = sol.ComputeHCurlError(&E, &CurlE);
|
||||
real_t error = sol.ComputeHCurlError(&E, &CurlE);
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "\n|| E_h - E ||_{H(Curl)} = " << error << '\n' << endl;
|
||||
@@ -442,8 +442,8 @@ void CurlE_exact(const Vector &x, Vector &dE)
|
||||
{
|
||||
if (dim == 1)
|
||||
{
|
||||
double c4 = cos(kappa * x(0) + 0.4 * M_PI);
|
||||
double c9 = cos(kappa * x(0) + 0.9 * M_PI);
|
||||
real_t c4 = cos(kappa * x(0) + 0.4 * M_PI);
|
||||
real_t c9 = cos(kappa * x(0) + 0.9 * M_PI);
|
||||
|
||||
dE(0) = 0.0;
|
||||
dE(1) = -1.3 * c9;
|
||||
@@ -452,9 +452,9 @@ void CurlE_exact(const Vector &x, Vector &dE)
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
double c0 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
double c4 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
double c9 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
real_t c0 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
real_t c4 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
real_t c9 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
|
||||
dE(0) = 1.3 * c9;
|
||||
dE(1) = -1.3 * c9;
|
||||
@@ -463,13 +463,13 @@ void CurlE_exact(const Vector &x, Vector &dE)
|
||||
}
|
||||
else
|
||||
{
|
||||
double s0 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
double c0 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
double s4 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
double c4 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
double c9 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
double sk = sin(kappa * x(2));
|
||||
double ck = cos(kappa * x(2));
|
||||
real_t s0 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
real_t c0 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
real_t s4 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
real_t c4 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
real_t c9 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
real_t sk = sin(kappa * x(2));
|
||||
real_t ck = cos(kappa * x(2));
|
||||
|
||||
dE(0) = 1.2 * s4 * sk + 1.3 * M_SQRT1_2 * c9 * ck;
|
||||
dE(1) = -1.1 * s0 * sk - 1.3 * M_SQRT1_2 * c9 * ck;
|
||||
@@ -482,9 +482,9 @@ void f_exact(const Vector &x, Vector &f)
|
||||
{
|
||||
if (dim == 1)
|
||||
{
|
||||
double s0 = sin(kappa * x(0) + 0.0 * M_PI);
|
||||
double s4 = sin(kappa * x(0) + 0.4 * M_PI);
|
||||
double s9 = sin(kappa * x(0) + 0.9 * M_PI);
|
||||
real_t s0 = sin(kappa * x(0) + 0.0 * M_PI);
|
||||
real_t s4 = sin(kappa * x(0) + 0.4 * M_PI);
|
||||
real_t s9 = sin(kappa * x(0) + 0.9 * M_PI);
|
||||
|
||||
f(0) = 2.2 * s0 + 1.2 * M_SQRT1_2 * s4;
|
||||
f(1) = 1.2 * (2.0 + kappa * kappa) * s4 +
|
||||
@@ -493,9 +493,9 @@ void f_exact(const Vector &x, Vector &f)
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
double s0 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
double s4 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
double s9 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
real_t s0 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
real_t s4 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
real_t s9 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
|
||||
f(0) = 0.55 * (4.0 + kappa * kappa) * s0 +
|
||||
0.6 * (M_SQRT2 - kappa * kappa) * s4;
|
||||
@@ -506,14 +506,14 @@ void f_exact(const Vector &x, Vector &f)
|
||||
}
|
||||
else
|
||||
{
|
||||
double s0 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
double c0 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
double s4 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
double c4 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
double s9 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
double c9 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
double sk = sin(kappa * x(2));
|
||||
double ck = cos(kappa * x(2));
|
||||
real_t s0 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
real_t c0 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.0 * M_PI);
|
||||
real_t s4 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
real_t c4 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.4 * M_PI);
|
||||
real_t s9 = sin(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
real_t c9 = cos(kappa * M_SQRT1_2 * (x(0) + x(1)) + 0.9 * M_PI);
|
||||
real_t sk = sin(kappa * x(2));
|
||||
real_t ck = cos(kappa * x(2));
|
||||
|
||||
f(0) = 0.55 * (4.0 + 3.0 * kappa * kappa) * s0 * ck +
|
||||
0.6 * (M_SQRT2 - kappa * kappa) * s4 * ck -
|
||||
|
||||
+18
-18
@@ -35,8 +35,8 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
double GetVectorMax(int vdim, const ParGridFunction &x);
|
||||
double GetScalarMax(const ParGridFunction &x);
|
||||
real_t GetVectorMax(int vdim, const ParGridFunction &x);
|
||||
real_t GetScalarMax(const ParGridFunction &x);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -140,7 +140,7 @@ int main(int argc, char *argv[])
|
||||
// extract the corresponding parallel matrices A and M.
|
||||
HypreParMatrix *A = NULL;
|
||||
HypreParMatrix *M = NULL;
|
||||
double shift = 0.0;
|
||||
real_t shift = 0.0;
|
||||
{
|
||||
DenseMatrix epsilonMat(3);
|
||||
epsilonMat(0,0) = 2.0; epsilonMat(1,1) = 2.0; epsilonMat(2,2) = 2.0;
|
||||
@@ -178,7 +178,7 @@ int main(int argc, char *argv[])
|
||||
m.AddDomainIntegrator(new VectorFEMassIntegrator(epsilon));
|
||||
m.Assemble();
|
||||
// shift the eigenvalue corresponding to eliminated dofs to a large value
|
||||
m.EliminateEssentialBCDiag(ess_bdr, numeric_limits<double>::min());
|
||||
m.EliminateEssentialBCDiag(ess_bdr, numeric_limits<real_t>::min());
|
||||
m.Finalize();
|
||||
|
||||
A = a.ParallelAssemble();
|
||||
@@ -204,7 +204,7 @@ int main(int argc, char *argv[])
|
||||
// 9. Compute the eigenmodes and extract the array of eigenvalues. Define
|
||||
// parallel grid functions to represent each of the eigenmodes returned by
|
||||
// the solver and their derivatives.
|
||||
Array<double> eigenvalues;
|
||||
Array<real_t> eigenvalues;
|
||||
ame->Solve();
|
||||
ame->GetEigenvalues(eigenvalues);
|
||||
ParGridFunction x(&fespace_nd);
|
||||
@@ -308,10 +308,10 @@ int main(int argc, char *argv[])
|
||||
yComp.ProjectCoefficient(yCoef);
|
||||
zComp.ProjectCoefficient(zCoef);
|
||||
|
||||
double max_x = GetScalarMax(xComp);
|
||||
double max_y = GetScalarMax(yComp);
|
||||
double max_z = GetScalarMax(zComp);
|
||||
double max_r = std::max(max_x, std::max(max_y, max_z));
|
||||
real_t max_x = GetScalarMax(xComp);
|
||||
real_t max_y = GetScalarMax(yComp);
|
||||
real_t max_z = GetScalarMax(zComp);
|
||||
real_t max_r = std::max(max_x, std::max(max_y, max_z));
|
||||
|
||||
ostringstream x_cmd;
|
||||
x_cmd << " window_title 'Eigenmode " << i+1 << '/' << nev
|
||||
@@ -368,7 +368,7 @@ int main(int argc, char *argv[])
|
||||
dyComp.ProjectCoefficient(dyCoef);
|
||||
dzComp.ProjectCoefficient(dzCoef);
|
||||
|
||||
double min_d = max_r / (bbMax[0] - bbMin[0]);
|
||||
real_t min_d = max_r / (bbMax[0] - bbMin[0]);
|
||||
|
||||
max_y = GetScalarMax(dyComp);
|
||||
max_z = GetScalarMax(dzComp);
|
||||
@@ -480,9 +480,9 @@ int main(int argc, char *argv[])
|
||||
xyComp.ProjectCoefficient(xyCoef);
|
||||
zComp.ProjectCoefficient(zCoef);
|
||||
|
||||
double max_v = GetVectorMax(2, xyComp);
|
||||
double max_s = GetScalarMax(zComp);
|
||||
double max_r = std::max(max_v, max_s);
|
||||
real_t max_v = GetVectorMax(2, xyComp);
|
||||
real_t max_s = GetScalarMax(zComp);
|
||||
real_t max_r = std::max(max_v, max_s);
|
||||
|
||||
ostringstream xy_cmd;
|
||||
xy_cmd << " window_title 'Eigenmode " << i+1 << '/' << nev
|
||||
@@ -523,7 +523,7 @@ int main(int argc, char *argv[])
|
||||
dxyComp.ProjectCoefficient(dxyCoef);
|
||||
dzComp.ProjectCoefficient(dzCoef);
|
||||
|
||||
double min_d = max_r / std::min(bbMax[0] - bbMin[0],
|
||||
real_t min_d = max_r / std::min(bbMax[0] - bbMin[0],
|
||||
bbMax[1] - bbMin[1]);
|
||||
|
||||
max_v = GetVectorMax(2, dxyComp);
|
||||
@@ -649,17 +649,17 @@ int main(int argc, char *argv[])
|
||||
return 0;
|
||||
}
|
||||
|
||||
double GetVectorMax(int vdim, const ParGridFunction &x)
|
||||
real_t GetVectorMax(int vdim, const ParGridFunction &x)
|
||||
{
|
||||
Vector zeroVec(vdim); zeroVec = 0.0;
|
||||
VectorConstantCoefficient zero(zeroVec);
|
||||
double nrm = x.ComputeMaxError(zero);
|
||||
real_t nrm = x.ComputeMaxError(zero);
|
||||
return nrm;
|
||||
}
|
||||
|
||||
double GetScalarMax(const ParGridFunction &x)
|
||||
real_t GetScalarMax(const ParGridFunction &x)
|
||||
{
|
||||
ConstantCoefficient zero(0.0);
|
||||
double nrm = x.ComputeMaxError(zero);
|
||||
real_t nrm = x.ComputeMaxError(zero);
|
||||
return nrm;
|
||||
}
|
||||
|
||||
+28
-19
@@ -19,8 +19,11 @@
|
||||
// ex33 -m ../data/amr-quad.mesh -ver -alpha 2.6 -o 2 -r 2
|
||||
// ex33 -m ../data/inline-hex.mesh -ver -alpha 0.3 -o 2 -r 1
|
||||
//
|
||||
// Note: the analytic solution to this problem is u = ∏_{i=0}^{dim-1} sin(π x_i)
|
||||
// for all alpha.
|
||||
// Note: The manufactured solution used in this problem is
|
||||
//
|
||||
// u = ∏_{i=0}^{dim-1} sin(π x_i) ,
|
||||
//
|
||||
// regardless of the value of alpha.
|
||||
//
|
||||
// Description:
|
||||
//
|
||||
@@ -86,11 +89,16 @@ using namespace mfem;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
cout << "This example is not supported in single precision.\n\n";
|
||||
return MFEM_SKIP_RETURN_VALUE;
|
||||
#endif
|
||||
|
||||
// 1. Parse command-line options.
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
int num_refs = 3;
|
||||
double alpha = 0.5;
|
||||
real_t alpha = 0.5;
|
||||
bool visualization = true;
|
||||
bool verification = false;
|
||||
|
||||
@@ -109,7 +117,8 @@ int main(int argc, char *argv[])
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&verification, "-ver", "--verification", "-no-ver",
|
||||
"--no-verification",
|
||||
"Use sinusoidal function (f) for analytic comparison.");
|
||||
"Use sinusoidal function (f) for manufactured "
|
||||
"solution test.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
@@ -118,13 +127,13 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
Array<double> coeffs, poles;
|
||||
Array<real_t> coeffs, poles;
|
||||
int progress_steps = 1;
|
||||
|
||||
// 2. Compute the rational expansion coefficients that define the
|
||||
// integer-order PDEs.
|
||||
const int power_of_laplace = (int)floor(alpha);
|
||||
double exponent_to_approximate = alpha - power_of_laplace;
|
||||
real_t exponent_to_approximate = alpha - power_of_laplace;
|
||||
bool integer_order = false;
|
||||
// Check if alpha is an integer or not.
|
||||
if (abs(exponent_to_approximate) > 1e-12)
|
||||
@@ -135,7 +144,7 @@ int main(int argc, char *argv[])
|
||||
ComputePartialFractionApproximation(exponent_to_approximate, coeffs,
|
||||
poles);
|
||||
|
||||
// If the example is build without LAPACK, the exponent_to_approximate
|
||||
// If the example is built without LAPACK, the exponent_to_approximate
|
||||
// might be modified by the function call above.
|
||||
alpha = exponent_to_approximate + power_of_laplace;
|
||||
}
|
||||
@@ -158,7 +167,7 @@ int main(int argc, char *argv[])
|
||||
// 5. Define a finite element space on the mesh.
|
||||
H1_FECollection fec(order, dim);
|
||||
FiniteElementSpace fespace(&mesh, &fec);
|
||||
cout << "Number of finite element unknowns: "
|
||||
cout << "Number of degrees of freedom: "
|
||||
<< fespace.GetTrueVSize() << endl;
|
||||
|
||||
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
@@ -173,7 +182,7 @@ int main(int argc, char *argv[])
|
||||
// 7. Define diffusion coefficient, load, and solution GridFunction.
|
||||
auto func = [&alpha](const Vector &x)
|
||||
{
|
||||
double val = 1.0;
|
||||
real_t val = 1.0;
|
||||
for (int i=0; i<x.Size(); i++)
|
||||
{
|
||||
val *= sin(M_PI*x(i));
|
||||
@@ -364,7 +373,7 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
auto solution = [] (const Vector &x)
|
||||
{
|
||||
double val = 1.0;
|
||||
real_t val = 1.0;
|
||||
for (int i=0; i<x.Size(); i++)
|
||||
{
|
||||
val *= sin(M_PI*x(i));
|
||||
@@ -372,31 +381,31 @@ int main(int argc, char *argv[])
|
||||
return val;
|
||||
};
|
||||
FunctionCoefficient sol(solution);
|
||||
double l2_error = u.ComputeL2Error(sol);
|
||||
real_t l2_error = u.ComputeL2Error(sol);
|
||||
|
||||
string analytic_solution,expected_mesh;
|
||||
string manufactured_solution,expected_mesh;
|
||||
switch (dim)
|
||||
{
|
||||
case 1:
|
||||
analytic_solution = "sin(π x)";
|
||||
manufactured_solution = "sin(π x)";
|
||||
expected_mesh = "inline_segment.mesh";
|
||||
break;
|
||||
case 2:
|
||||
analytic_solution = "sin(π x) sin(π y)";
|
||||
manufactured_solution = "sin(π x) sin(π y)";
|
||||
expected_mesh = "inline_quad.mesh";
|
||||
break;
|
||||
default:
|
||||
analytic_solution = "sin(π x) sin(π y) sin(π z)";
|
||||
manufactured_solution = "sin(π x) sin(π y) sin(π z)";
|
||||
expected_mesh = "inline_hex.mesh";
|
||||
break;
|
||||
}
|
||||
|
||||
mfem::out << "\n" << string(80,'=')
|
||||
<< "\n\nSolution Verification in "<< dim << "D \n\n"
|
||||
<< "Analytic solution : " << analytic_solution << "\n"
|
||||
<< "Expected mesh : " << expected_mesh <<"\n"
|
||||
<< "Your mesh : " << mesh_file << "\n"
|
||||
<< "L2 error : " << l2_error << "\n\n"
|
||||
<< "Manufactured solution : " << manufactured_solution << "\n"
|
||||
<< "Expected mesh : " << expected_mesh <<"\n"
|
||||
<< "Your mesh : " << mesh_file << "\n"
|
||||
<< "L2 error : " << l2_error << "\n\n"
|
||||
<< string(80,'=') << endl;
|
||||
}
|
||||
|
||||
|
||||
+32
-30
@@ -50,8 +50,8 @@ using namespace mfem;
|
||||
|
||||
See pg. A1501 of Nakatsukasa et al. [1]. */
|
||||
void RationalApproximation_AAA(const Vector &val, const Vector &pt,
|
||||
Array<double> &z, Array<double> &f, Vector &w,
|
||||
double tol, int max_order)
|
||||
Array<real_t> &z, Array<real_t> &f, Vector &w,
|
||||
real_t tol, int max_order)
|
||||
{
|
||||
|
||||
// number of sample points
|
||||
@@ -67,11 +67,11 @@ void RationalApproximation_AAA(const Vector &val, const Vector &pt,
|
||||
DenseMatrix C, Ctemp, A, Am;
|
||||
// auxiliary arrays and vectors
|
||||
Vector f_vec;
|
||||
Array<double> c_i;
|
||||
Array<real_t> c_i;
|
||||
|
||||
// mean of the value vector
|
||||
Vector R(val.Size());
|
||||
double mean_val = val.Sum()/size;
|
||||
real_t mean_val = val.Sum()/size;
|
||||
|
||||
for (int i = 0; i<R.Size(); i++) { R(i) = mean_val; }
|
||||
|
||||
@@ -79,10 +79,10 @@ void RationalApproximation_AAA(const Vector &val, const Vector &pt,
|
||||
{
|
||||
// select next support point
|
||||
int idx = 0;
|
||||
double tmp_max = 0;
|
||||
real_t tmp_max = 0;
|
||||
for (int j = 0; j < size; j++)
|
||||
{
|
||||
double tmp = abs(val(j)-R(j));
|
||||
real_t tmp = abs(val(j)-R(j));
|
||||
if (tmp > tmp_max)
|
||||
{
|
||||
tmp_max = tmp;
|
||||
@@ -98,7 +98,7 @@ void RationalApproximation_AAA(const Vector &val, const Vector &pt,
|
||||
J.DeleteFirst(idx);
|
||||
|
||||
// next column in Cauchy matrix
|
||||
Array<double> C_tmp(size);
|
||||
Array<real_t> C_tmp(size);
|
||||
for (int j = 0; j < size; j++)
|
||||
{
|
||||
C_tmp[j] = 1.0/(pt(j)-pt(idx));
|
||||
@@ -131,7 +131,7 @@ void RationalApproximation_AAA(const Vector &val, const Vector &pt,
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
DenseMatrixSVD svd(Am,false,true);
|
||||
DenseMatrixSVD svd(Am,'N','A');
|
||||
svd.Eval(Am);
|
||||
DenseMatrix &v = svd.RightSingularvectors();
|
||||
v.GetRow(k,w);
|
||||
@@ -173,7 +173,7 @@ void RationalApproximation_AAA(const Vector &val, const Vector &pt,
|
||||
|
||||
See pg. A1501 of Nakatsukasa et al. [1]. */
|
||||
void ComputePolesAndZeros(const Vector &z, const Vector &f, const Vector &w,
|
||||
Array<double> & poles, Array<double> & zeros, double &scale)
|
||||
Array<real_t> & poles, Array<real_t> & zeros, real_t &scale)
|
||||
{
|
||||
// Initialization
|
||||
poles.SetSize(0);
|
||||
@@ -242,8 +242,8 @@ void ComputePolesAndZeros(const Vector &z, const Vector &f, const Vector &w,
|
||||
@param[in] zeros Array of zeros
|
||||
@param[in] scale Scaling constant
|
||||
@param[out] coeffs Coefficients c_i */
|
||||
void PartialFractionExpansion(double scale, Array<double> & poles,
|
||||
Array<double> & zeros, Array<double> & coeffs)
|
||||
void PartialFractionExpansion(real_t scale, Array<real_t> & poles,
|
||||
Array<real_t> & zeros, Array<real_t> & coeffs)
|
||||
{
|
||||
int psize = poles.Size();
|
||||
int zsize = zeros.Size();
|
||||
@@ -259,13 +259,13 @@ void PartialFractionExpansion(double scale, Array<double> & poles,
|
||||
|
||||
for (int i=0; i<psize; i++)
|
||||
{
|
||||
double tmp_numer=1.0;
|
||||
real_t tmp_numer=1.0;
|
||||
for (int j=0; j<zsize; j++)
|
||||
{
|
||||
tmp_numer *= poles[i]-zeros[j];
|
||||
}
|
||||
|
||||
double tmp_denom=1.0;
|
||||
real_t tmp_denom=1.0;
|
||||
for (int k=0; k<psize; k++)
|
||||
{
|
||||
if (k != i) { tmp_denom *= poles[i]-poles[k]; }
|
||||
@@ -292,10 +292,10 @@ void PartialFractionExpansion(double scale, Array<double> & poles,
|
||||
@a alpha != 0.99, then @a alpha = 0.5 is used by default.
|
||||
|
||||
See pg. A1501 of Nakatsukasa et al. [1]. */
|
||||
void ComputePartialFractionApproximation(double & alpha,
|
||||
Array<double> & coeffs, Array<double> & poles,
|
||||
double lmax = 1000.,
|
||||
double tol=1e-10, int npoints = 1000,
|
||||
void ComputePartialFractionApproximation(real_t & alpha,
|
||||
Array<real_t> & coeffs, Array<real_t> & poles,
|
||||
real_t lmax = 1000.,
|
||||
real_t tol=1e-10, int npoints = 1000,
|
||||
int max_order = 100)
|
||||
{
|
||||
MFEM_VERIFY(alpha < 1., "alpha must be less than 1");
|
||||
@@ -320,41 +320,41 @@ void ComputePartialFractionApproximation(double & alpha,
|
||||
<< "\nThe default is alpha = 0.5.\n" << string(80, '=') << "\n"
|
||||
<< endl;
|
||||
}
|
||||
const double eps = std::numeric_limits<double>::epsilon();
|
||||
const real_t eps = std::numeric_limits<real_t>::epsilon();
|
||||
|
||||
if (abs(alpha - 0.33) < eps)
|
||||
{
|
||||
coeffs = Array<double> ({1.821898e+03, 9.101221e+01, 2.650611e+01,
|
||||
coeffs = Array<real_t> ({1.821898e+03, 9.101221e+01, 2.650611e+01,
|
||||
1.174937e+01, 6.140444e+00, 3.441713e+00,
|
||||
1.985735e+00, 1.162634e+00, 6.891560e-01,
|
||||
4.111574e-01, 2.298736e-01});
|
||||
poles = Array<double> ({-4.155583e+04, -2.956285e+03, -8.331715e+02,
|
||||
poles = Array<real_t> ({-4.155583e+04, -2.956285e+03, -8.331715e+02,
|
||||
-3.139332e+02, -1.303448e+02, -5.563385e+01,
|
||||
-2.356255e+01, -9.595516e+00, -3.552160e+00,
|
||||
-1.032136e+00, -1.241480e-01});
|
||||
}
|
||||
else if (abs(alpha - 0.99) < eps)
|
||||
{
|
||||
coeffs = Array<double>({2.919591e-02, 1.419750e-02, 1.065798e-02,
|
||||
coeffs = Array<real_t>({2.919591e-02, 1.419750e-02, 1.065798e-02,
|
||||
9.395094e-03, 8.915329e-03, 8.822991e-03,
|
||||
9.058247e-03, 9.814521e-03, 1.180396e-02,
|
||||
1.834554e-02, 9.840482e-01});
|
||||
poles = Array<double> ({-1.069683e+04, -1.769370e+03, -5.718374e+02,
|
||||
poles = Array<real_t> ({-1.069683e+04, -1.769370e+03, -5.718374e+02,
|
||||
-2.242095e+02, -9.419132e+01, -4.031012e+01,
|
||||
-1.701525e+01, -6.810088e+00, -2.382810e+00,
|
||||
-5.700059e-01, -1.384324e-03});
|
||||
}
|
||||
else
|
||||
{
|
||||
if (abs(alpha - 0.5) > eps && print_warning)
|
||||
if (abs(alpha - 0.5) > eps)
|
||||
{
|
||||
alpha = 0.5;
|
||||
}
|
||||
coeffs = Array<double>({2.290262e+02, 2.641819e+01, 1.005566e+01,
|
||||
coeffs = Array<real_t>({2.290262e+02, 2.641819e+01, 1.005566e+01,
|
||||
5.390411e+00, 3.340725e+00, 2.211205e+00,
|
||||
1.508883e+00, 1.049474e+00, 7.462709e-01,
|
||||
5.482686e-01, 4.232510e-01, 3.578967e-01});
|
||||
poles = Array<double>({-3.168211e+04, -3.236077e+03, -9.868287e+02,
|
||||
poles = Array<real_t>({-3.168211e+04, -3.236077e+03, -9.868287e+02,
|
||||
-3.945597e+02, -1.738889e+02, -7.925178e+01,
|
||||
-3.624992e+01, -1.629196e+01, -6.982956e+00,
|
||||
-2.679984e+00, -7.782607e-01, -7.649166e-02});
|
||||
@@ -368,19 +368,21 @@ void ComputePartialFractionApproximation(double & alpha,
|
||||
|
||||
|
||||
return;
|
||||
#else
|
||||
MFEM_CONTRACT_VAR(print_warning);
|
||||
#endif
|
||||
|
||||
Vector x(npoints);
|
||||
Vector val(npoints);
|
||||
double dx = lmax / (double)(npoints-1);
|
||||
real_t dx = lmax / (real_t)(npoints-1);
|
||||
for (int i = 0; i<npoints; i++)
|
||||
{
|
||||
x(i) = dx * (double)i;
|
||||
x(i) = dx * (real_t)i;
|
||||
val(i) = pow(x(i),1.-alpha);
|
||||
}
|
||||
|
||||
// Apply triple-A algorithm to f(x) = x^{1-a}
|
||||
Array<double> z, f;
|
||||
Array<real_t> z, f;
|
||||
Vector w;
|
||||
RationalApproximation_AAA(val,x,z,f,w,tol,max_order);
|
||||
|
||||
@@ -389,8 +391,8 @@ void ComputePartialFractionApproximation(double & alpha,
|
||||
vecf.SetDataAndSize(f.GetData(), f.Size());
|
||||
|
||||
// Compute poles and zeros for RA of f(x) = x^{1-a}
|
||||
double scale;
|
||||
Array<double> zeros;
|
||||
real_t scale;
|
||||
Array<real_t> zeros;
|
||||
ComputePolesAndZeros(vecz, vecf, w, poles, zeros, scale);
|
||||
|
||||
// Remove the zero at x=0, thus, delivering a RA for f(x) = x^{-a}
|
||||
|
||||
+30
-20
@@ -19,8 +19,11 @@
|
||||
// mpirun -np 4 ex33p -m ../data/amr-quad.mesh -ver -alpha 2.6 -o 2 -r 2
|
||||
// mpirun -np 4 ex33p -m ../data/inline-hex.mesh -ver -alpha 0.3 -o 2 -r 1
|
||||
|
||||
// Note: the analytic solution to this problem is u = ∏_{i=0}^{dim-1} sin(π x_i)
|
||||
// for all alpha.
|
||||
// Note: The manufactured solution used in this problem is
|
||||
//
|
||||
// u = ∏_{i=0}^{dim-1} sin(π x_i) ,
|
||||
//
|
||||
// regardless of the value of alpha.
|
||||
//
|
||||
// Description:
|
||||
//
|
||||
@@ -86,6 +89,11 @@ using namespace mfem;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
cout << "This example is not supported in single precision.\n\n";
|
||||
return MFEM_SKIP_RETURN_VALUE;
|
||||
#endif
|
||||
|
||||
// 0. Initialize MPI.
|
||||
Mpi::Init(argc, argv);
|
||||
int num_procs = Mpi::WorldSize();
|
||||
@@ -96,7 +104,7 @@ int main(int argc, char *argv[])
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
int num_refs = 3;
|
||||
double alpha = 0.5;
|
||||
real_t alpha = 0.5;
|
||||
bool visualization = true;
|
||||
bool verification = false;
|
||||
|
||||
@@ -115,7 +123,8 @@ int main(int argc, char *argv[])
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&verification, "-ver", "--verification", "-no-ver",
|
||||
"--no-verification",
|
||||
"Use sinusoidal function (f) for analytic comparison.");
|
||||
"Use sinusoidal function (f) for manufactured "
|
||||
"solution test.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
@@ -127,13 +136,13 @@ int main(int argc, char *argv[])
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
Array<double> coeffs, poles;
|
||||
Array<real_t> coeffs, poles;
|
||||
int progress_steps = 1;
|
||||
|
||||
// 2. Compute the rational expansion coefficients that define the
|
||||
// integer-order PDEs.
|
||||
const int power_of_laplace = floor(alpha);
|
||||
double exponent_to_approximate = alpha - power_of_laplace;
|
||||
real_t exponent_to_approximate = alpha - power_of_laplace;
|
||||
bool integer_order = false;
|
||||
// Check if alpha is an integer or not.
|
||||
if (abs(exponent_to_approximate) > 1e-12)
|
||||
@@ -175,10 +184,11 @@ int main(int argc, char *argv[])
|
||||
// 5. Define a finite element space on the mesh.
|
||||
H1_FECollection fec(order, dim);
|
||||
ParFiniteElementSpace fespace(&pmesh, &fec);
|
||||
HYPRE_BigInt size = fespace.GlobalTrueVSize();
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "Number of finite element unknowns: "
|
||||
<< fespace.GetTrueVSize() << endl;
|
||||
cout << "Number of degrees of freedom: "
|
||||
<< size << endl;
|
||||
}
|
||||
|
||||
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
@@ -193,7 +203,7 @@ int main(int argc, char *argv[])
|
||||
// 7. Define diffusion coefficient, load, and solution GridFunction.
|
||||
auto func = [&alpha](const Vector &x)
|
||||
{
|
||||
double val = 1.0;
|
||||
real_t val = 1.0;
|
||||
for (int i=0; i<x.Size(); i++)
|
||||
{
|
||||
val *= sin(M_PI*x(i));
|
||||
@@ -218,7 +228,7 @@ int main(int argc, char *argv[])
|
||||
if (verification)
|
||||
{
|
||||
// This statement is only relevant for the verification of the code. It
|
||||
// uses a different f such that an analytic solution is known and easy
|
||||
// uses a different f such that an manufactured solution is known and easy
|
||||
// to compare with the numerical one. The FPDE becomes:
|
||||
// (-Δ)^α u = (2\pi ^2)^α sin(\pi x) sin(\pi y) on [0,1]^2
|
||||
// -> u(x,y) = sin(\pi x) sin(\pi y)
|
||||
@@ -398,7 +408,7 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
auto solution = [] (const Vector &x)
|
||||
{
|
||||
double val = 1.0;
|
||||
real_t val = 1.0;
|
||||
for (int i=0; i<x.Size(); i++)
|
||||
{
|
||||
val *= sin(M_PI*x(i));
|
||||
@@ -406,33 +416,33 @@ int main(int argc, char *argv[])
|
||||
return val;
|
||||
};
|
||||
FunctionCoefficient sol(solution);
|
||||
double l2_error = u.ComputeL2Error(sol);
|
||||
real_t l2_error = u.ComputeL2Error(sol);
|
||||
|
||||
if (Mpi::Root())
|
||||
{
|
||||
string analytic_solution,expected_mesh;
|
||||
string manufactured_solution,expected_mesh;
|
||||
switch (dim)
|
||||
{
|
||||
case 1:
|
||||
analytic_solution = "sin(π x)";
|
||||
manufactured_solution = "sin(π x)";
|
||||
expected_mesh = "inline_segment.mesh";
|
||||
break;
|
||||
case 2:
|
||||
analytic_solution = "sin(π x) sin(π y)";
|
||||
manufactured_solution = "sin(π x) sin(π y)";
|
||||
expected_mesh = "inline_quad.mesh";
|
||||
break;
|
||||
default:
|
||||
analytic_solution = "sin(π x) sin(π y) sin(π z)";
|
||||
manufactured_solution = "sin(π x) sin(π y) sin(π z)";
|
||||
expected_mesh = "inline_hex.mesh";
|
||||
break;
|
||||
}
|
||||
|
||||
mfem::out << "\n" << string(80,'=')
|
||||
<< "\n\nSolution Verification in "<< dim << "D \n\n"
|
||||
<< "Analytic solution : " << analytic_solution << "\n"
|
||||
<< "Expected mesh : " << expected_mesh <<"\n"
|
||||
<< "Your mesh : " << mesh_file << "\n"
|
||||
<< "L2 error : " << l2_error << "\n\n"
|
||||
<< "Manufactured solution : " << manufactured_solution << "\n"
|
||||
<< "Expected mesh : " << expected_mesh <<"\n"
|
||||
<< "Your mesh : " << mesh_file << "\n"
|
||||
<< "L2 error : " << l2_error << "\n\n"
|
||||
<< string(80,'=') << endl;
|
||||
}
|
||||
}
|
||||
|
||||
+7
-3
@@ -52,6 +52,7 @@ static bool pa_ = false;
|
||||
static bool algebraic_ceed_ = false;
|
||||
|
||||
void ComputeCurrentDensityOnSubMesh(int order,
|
||||
bool visualization,
|
||||
const Array<int> &phi0_attr,
|
||||
const Array<int> &phi1_attr,
|
||||
const Array<int> &jn_zero_attr,
|
||||
@@ -69,7 +70,7 @@ int main(int argc, char *argv[])
|
||||
Array<int> jn_zero_attr;
|
||||
int ref_levels = 1;
|
||||
int order = 1;
|
||||
double delta_const = 1e-6;
|
||||
real_t delta_const = 1e-6;
|
||||
bool mixed = true;
|
||||
bool static_cond = false;
|
||||
const char *device_config = "cpu";
|
||||
@@ -236,8 +237,8 @@ int main(int argc, char *argv[])
|
||||
FiniteElementSpace fes_cond_rt(&mesh_cond, &fec_cond_rt);
|
||||
GridFunction j_cond(&fes_cond_rt);
|
||||
|
||||
ComputeCurrentDensityOnSubMesh(order, phi0_attr, phi1_attr, jn_zero_attr,
|
||||
j_cond);
|
||||
ComputeCurrentDensityOnSubMesh(order, visualization,
|
||||
phi0_attr, phi1_attr, jn_zero_attr, j_cond);
|
||||
|
||||
// 6a. Save the SubMesh and associated current density in parallel. This
|
||||
// output can be viewed later using GLVis:
|
||||
@@ -255,6 +256,7 @@ int main(int argc, char *argv[])
|
||||
cond_ofs.precision(8);
|
||||
j_cond.Save(cond_ofs);
|
||||
}
|
||||
|
||||
// 6b. Send the current density, computed on the SubMesh, to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
@@ -450,6 +452,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
void ComputeCurrentDensityOnSubMesh(int order,
|
||||
bool visualization,
|
||||
const Array<int> &phi0_attr,
|
||||
const Array<int> &phi1_attr,
|
||||
const Array<int> &jn_zero_attr,
|
||||
@@ -567,6 +570,7 @@ void ComputeCurrentDensityOnSubMesh(int order,
|
||||
a_h1.RecoverFEMSolution(X, b_h1, phi_h1);
|
||||
}
|
||||
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
|
||||
+8
-3
@@ -49,6 +49,7 @@ using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
void ComputeCurrentDensityOnSubMesh(int order,
|
||||
bool visualization,
|
||||
const Array<int> &phi0_attr,
|
||||
const Array<int> &phi1_attr,
|
||||
const Array<int> &jn_zero_attr,
|
||||
@@ -73,7 +74,7 @@ int main(int argc, char *argv[])
|
||||
int ser_ref_levels = 1;
|
||||
int par_ref_levels = 1;
|
||||
int order = 1;
|
||||
double delta_const = 1e-6;
|
||||
real_t delta_const = 1e-6;
|
||||
bool mixed = true;
|
||||
bool static_cond = false;
|
||||
bool pa = false;
|
||||
@@ -270,8 +271,8 @@ int main(int argc, char *argv[])
|
||||
ParFiniteElementSpace fes_cond_rt(&pmesh_cond, &fec_cond_rt);
|
||||
ParGridFunction j_cond(&fes_cond_rt);
|
||||
|
||||
ComputeCurrentDensityOnSubMesh(order, phi0_attr, phi1_attr, jn_zero_attr,
|
||||
j_cond);
|
||||
ComputeCurrentDensityOnSubMesh(order, visualization,
|
||||
phi0_attr, phi1_attr, jn_zero_attr, j_cond);
|
||||
|
||||
// 7a. Save the SubMesh and associated current density in parallel. This
|
||||
// output can be viewed later using GLVis:
|
||||
@@ -289,6 +290,7 @@ int main(int argc, char *argv[])
|
||||
cond_ofs.precision(8);
|
||||
j_cond.Save(cond_ofs);
|
||||
}
|
||||
|
||||
// 7b. Send the current density, computed on the SubMesh, to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
@@ -498,6 +500,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
void ComputeCurrentDensityOnSubMesh(int order,
|
||||
bool visualization,
|
||||
const Array<int> &phi0_attr,
|
||||
const Array<int> &phi1_attr,
|
||||
const Array<int> &jn_zero_attr,
|
||||
@@ -586,6 +589,8 @@ void ComputeCurrentDensityOnSubMesh(int order,
|
||||
cg.Mult(B, X);
|
||||
a_h1.RecoverFEMSolution(X, b_h1, phi_h1);
|
||||
}
|
||||
|
||||
if (visualization)
|
||||
{
|
||||
int num_procs = fes_cond_h1.GetNRanks();
|
||||
char vishost[] = "localhost";
|
||||
|
||||
+9
-9
@@ -55,9 +55,9 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
static double mu_ = 1.0;
|
||||
static double epsilon_ = 1.0;
|
||||
static double sigma_ = 2.0;
|
||||
static real_t mu_ = 1.0;
|
||||
static real_t epsilon_ = 1.0;
|
||||
static real_t sigma_ = 2.0;
|
||||
|
||||
void SetPortBC(int prob, int dim, int mode, ParGridFunction &port_bc);
|
||||
|
||||
@@ -77,9 +77,9 @@ int main(int argc, char *argv[])
|
||||
Array<int> port_bc_attr;
|
||||
int prob = 0;
|
||||
int mode = 1;
|
||||
double freq = -1.0;
|
||||
double omega = 2.0 * M_PI;
|
||||
double a_coef = 0.0;
|
||||
real_t freq = -1.0;
|
||||
real_t omega = 2.0 * M_PI;
|
||||
real_t a_coef = 0.0;
|
||||
bool herm_conv = true;
|
||||
bool slu_solver = false;
|
||||
bool visualization = 1;
|
||||
@@ -587,7 +587,7 @@ int main(int argc, char *argv[])
|
||||
int i = 0;
|
||||
while (sol_sock)
|
||||
{
|
||||
double t = (double)(i % num_frames) / num_frames;
|
||||
real_t t = (real_t)(i % num_frames) / num_frames;
|
||||
ostringstream oss;
|
||||
oss << "Harmonic Solution (t = " << t << " T)";
|
||||
|
||||
@@ -637,7 +637,7 @@ void ScalarWaveGuide(int mode, ParGridFunction &x)
|
||||
m.AddDomainIntegrator(new MassIntegrator);
|
||||
m.Assemble();
|
||||
// shift the eigenvalue corresponding to eliminated dofs to a large value
|
||||
m.EliminateEssentialBCDiag(ess_bdr, numeric_limits<double>::min());
|
||||
m.EliminateEssentialBCDiag(ess_bdr, numeric_limits<real_t>::min());
|
||||
m.Finalize();
|
||||
|
||||
HypreParMatrix *A = a.ParallelAssemble();
|
||||
@@ -694,7 +694,7 @@ void VectorWaveGuide(int mode, ParGridFunction &x)
|
||||
m.AddDomainIntegrator(new VectorFEMassIntegrator);
|
||||
m.Assemble();
|
||||
// shift the eigenvalue corresponding to eliminated dofs to a large value
|
||||
m.EliminateEssentialBCDiag(ess_bdr, numeric_limits<double>::min());
|
||||
m.EliminateEssentialBCDiag(ess_bdr, numeric_limits<real_t>::min());
|
||||
m.Finalize();
|
||||
|
||||
HypreParMatrix *A = a.ParallelAssemble();
|
||||
|
||||
+45
-45
@@ -37,8 +37,8 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
double spherical_obstacle(const Vector &pt);
|
||||
double exact_solution_obstacle(const Vector &pt);
|
||||
real_t spherical_obstacle(const Vector &pt);
|
||||
real_t exact_solution_obstacle(const Vector &pt);
|
||||
void exact_solution_gradient_obstacle(const Vector &pt, Vector &grad);
|
||||
|
||||
class LogarithmGridFunctionCoefficient : public Coefficient
|
||||
@@ -46,14 +46,14 @@ class LogarithmGridFunctionCoefficient : public Coefficient
|
||||
protected:
|
||||
GridFunction *u; // grid function
|
||||
Coefficient *obstacle;
|
||||
double min_val;
|
||||
real_t min_val;
|
||||
|
||||
public:
|
||||
LogarithmGridFunctionCoefficient(GridFunction &u_, Coefficient &obst_,
|
||||
double min_val_=-36)
|
||||
real_t min_val_=-36)
|
||||
: u(&u_), obstacle(&obst_), min_val(min_val_) { }
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
virtual real_t Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
class ExponentialGridFunctionCoefficient : public Coefficient
|
||||
@@ -61,15 +61,15 @@ class ExponentialGridFunctionCoefficient : public Coefficient
|
||||
protected:
|
||||
GridFunction *u;
|
||||
Coefficient *obstacle;
|
||||
double min_val;
|
||||
double max_val;
|
||||
real_t min_val;
|
||||
real_t max_val;
|
||||
|
||||
public:
|
||||
ExponentialGridFunctionCoefficient(GridFunction &u_, Coefficient &obst_,
|
||||
double min_val_=0.0, double max_val_=1e6)
|
||||
real_t min_val_=0.0, real_t max_val_=1e6)
|
||||
: u(&u_), obstacle(&obst_), min_val(min_val_), max_val(max_val_) { }
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
virtual real_t Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
@@ -78,8 +78,8 @@ int main(int argc, char *argv[])
|
||||
int order = 1;
|
||||
int max_it = 10;
|
||||
int ref_levels = 3;
|
||||
double alpha = 1.0;
|
||||
double tol = 1e-5;
|
||||
real_t alpha = 1.0;
|
||||
real_t tol = 1e-5;
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
@@ -124,7 +124,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 3C. Rescale the domain to a unit circle (radius = 1).
|
||||
GridFunction *nodes = mesh.GetNodes();
|
||||
double scale = 2*sqrt(2);
|
||||
real_t scale = 2*sqrt(2);
|
||||
*nodes /= scale;
|
||||
|
||||
// 4. Define the necessary finite element spaces on the mesh.
|
||||
@@ -159,8 +159,8 @@ int main(int argc, char *argv[])
|
||||
// 6. Define an initial guess for the solution.
|
||||
auto IC_func = [](const Vector &x)
|
||||
{
|
||||
double r0 = 1.0;
|
||||
double rr = 0.0;
|
||||
real_t r0 = 1.0;
|
||||
real_t rr = 0.0;
|
||||
for (int i=0; i<x.Size(); i++)
|
||||
{
|
||||
rr += x(i)*x(i);
|
||||
@@ -211,7 +211,7 @@ int main(int argc, char *argv[])
|
||||
// 10. Iterate
|
||||
int k;
|
||||
int total_iterations = 0;
|
||||
double increment_u = 0.1;
|
||||
real_t increment_u = 0.1;
|
||||
for (k = 0; k < max_it; k++)
|
||||
{
|
||||
GridFunction u_tmp(&H1fes);
|
||||
@@ -300,10 +300,10 @@ int main(int argc, char *argv[])
|
||||
delta_psi_gf.MakeRef(&L2fes, x.GetBlock(1), 0);
|
||||
|
||||
u_tmp -= u_gf;
|
||||
double Newton_update_size = u_tmp.ComputeL2Error(zero);
|
||||
real_t Newton_update_size = u_tmp.ComputeL2Error(zero);
|
||||
u_tmp = u_gf;
|
||||
|
||||
double gamma = 1.0;
|
||||
real_t gamma = 1.0;
|
||||
delta_psi_gf *= gamma;
|
||||
psi_gf += delta_psi_gf;
|
||||
|
||||
@@ -337,7 +337,7 @@ int main(int argc, char *argv[])
|
||||
break;
|
||||
}
|
||||
|
||||
double H1_error = u_gf.ComputeH1Error(&exact_coef,&exact_grad_coef);
|
||||
real_t H1_error = u_gf.ComputeH1Error(&exact_coef,&exact_grad_coef);
|
||||
mfem::out << "H1-error (|| u - uₕᵏ||) = " << H1_error << endl;
|
||||
|
||||
}
|
||||
@@ -362,13 +362,13 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
{
|
||||
double L2_error = u_gf.ComputeL2Error(exact_coef);
|
||||
double H1_error = u_gf.ComputeH1Error(&exact_coef,&exact_grad_coef);
|
||||
real_t L2_error = u_gf.ComputeL2Error(exact_coef);
|
||||
real_t H1_error = u_gf.ComputeH1Error(&exact_coef,&exact_grad_coef);
|
||||
|
||||
ExponentialGridFunctionCoefficient u_alt_cf(psi_gf,obstacle);
|
||||
GridFunction u_alt_gf(&L2fes);
|
||||
u_alt_gf.ProjectCoefficient(u_alt_cf);
|
||||
double L2_error_alt = u_alt_gf.ComputeL2Error(exact_coef);
|
||||
real_t L2_error_alt = u_alt_gf.ComputeL2Error(exact_coef);
|
||||
|
||||
mfem::out << "\n Final L2-error (|| u - uₕ||) = " << L2_error <<
|
||||
endl;
|
||||
@@ -380,35 +380,35 @@ int main(int argc, char *argv[])
|
||||
return 0;
|
||||
}
|
||||
|
||||
double LogarithmGridFunctionCoefficient::Eval(ElementTransformation &T,
|
||||
real_t LogarithmGridFunctionCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(u != NULL, "grid function is not set");
|
||||
|
||||
double val = u->GetValue(T, ip) - obstacle->Eval(T, ip);
|
||||
real_t val = u->GetValue(T, ip) - obstacle->Eval(T, ip);
|
||||
return max(min_val, log(val));
|
||||
}
|
||||
|
||||
double ExponentialGridFunctionCoefficient::Eval(ElementTransformation &T,
|
||||
real_t ExponentialGridFunctionCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(u != NULL, "grid function is not set");
|
||||
|
||||
double val = u->GetValue(T, ip);
|
||||
real_t val = u->GetValue(T, ip);
|
||||
return min(max_val, max(min_val, exp(val) + obstacle->Eval(T, ip)));
|
||||
}
|
||||
|
||||
double spherical_obstacle(const Vector &pt)
|
||||
real_t spherical_obstacle(const Vector &pt)
|
||||
{
|
||||
double x = pt(0), y = pt(1);
|
||||
double r = sqrt(x*x + y*y);
|
||||
double r0 = 0.5;
|
||||
double beta = 0.9;
|
||||
real_t x = pt(0), y = pt(1);
|
||||
real_t r = sqrt(x*x + y*y);
|
||||
real_t r0 = 0.5;
|
||||
real_t beta = 0.9;
|
||||
|
||||
double b = r0*beta;
|
||||
double tmp = sqrt(r0*r0 - b*b);
|
||||
double B = tmp + b*b/tmp;
|
||||
double C = -b/tmp;
|
||||
real_t b = r0*beta;
|
||||
real_t tmp = sqrt(r0*r0 - b*b);
|
||||
real_t B = tmp + b*b/tmp;
|
||||
real_t C = -b/tmp;
|
||||
|
||||
if (r > b)
|
||||
{
|
||||
@@ -420,13 +420,13 @@ double spherical_obstacle(const Vector &pt)
|
||||
}
|
||||
}
|
||||
|
||||
double exact_solution_obstacle(const Vector &pt)
|
||||
real_t exact_solution_obstacle(const Vector &pt)
|
||||
{
|
||||
double x = pt(0), y = pt(1);
|
||||
double r = sqrt(x*x + y*y);
|
||||
double r0 = 0.5;
|
||||
double a = 0.348982574111686;
|
||||
double A = -0.340129705945858;
|
||||
real_t x = pt(0), y = pt(1);
|
||||
real_t r = sqrt(x*x + y*y);
|
||||
real_t r0 = 0.5;
|
||||
real_t a = 0.348982574111686;
|
||||
real_t A = -0.340129705945858;
|
||||
|
||||
if (r > a)
|
||||
{
|
||||
@@ -440,11 +440,11 @@ double exact_solution_obstacle(const Vector &pt)
|
||||
|
||||
void exact_solution_gradient_obstacle(const Vector &pt, Vector &grad)
|
||||
{
|
||||
double x = pt(0), y = pt(1);
|
||||
double r = sqrt(x*x + y*y);
|
||||
double r0 = 0.5;
|
||||
double a = 0.348982574111686;
|
||||
double A = -0.340129705945858;
|
||||
real_t x = pt(0), y = pt(1);
|
||||
real_t r = sqrt(x*x + y*y);
|
||||
real_t r0 = 0.5;
|
||||
real_t a = 0.348982574111686;
|
||||
real_t A = -0.340129705945858;
|
||||
|
||||
if (r > a)
|
||||
{
|
||||
|
||||
+45
-45
@@ -37,8 +37,8 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
double spherical_obstacle(const Vector &pt);
|
||||
double exact_solution_obstacle(const Vector &pt);
|
||||
real_t spherical_obstacle(const Vector &pt);
|
||||
real_t exact_solution_obstacle(const Vector &pt);
|
||||
void exact_solution_gradient_obstacle(const Vector &pt, Vector &grad);
|
||||
|
||||
class LogarithmGridFunctionCoefficient : public Coefficient
|
||||
@@ -46,14 +46,14 @@ class LogarithmGridFunctionCoefficient : public Coefficient
|
||||
protected:
|
||||
GridFunction *u; // grid function
|
||||
Coefficient *obstacle;
|
||||
double min_val;
|
||||
real_t min_val;
|
||||
|
||||
public:
|
||||
LogarithmGridFunctionCoefficient(GridFunction &u_, Coefficient &obst_,
|
||||
double min_val_=-36)
|
||||
real_t min_val_=-36)
|
||||
: u(&u_), obstacle(&obst_), min_val(min_val_) { }
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
virtual real_t Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
class ExponentialGridFunctionCoefficient : public Coefficient
|
||||
@@ -61,15 +61,15 @@ class ExponentialGridFunctionCoefficient : public Coefficient
|
||||
protected:
|
||||
GridFunction *u;
|
||||
Coefficient *obstacle;
|
||||
double min_val;
|
||||
double max_val;
|
||||
real_t min_val;
|
||||
real_t max_val;
|
||||
|
||||
public:
|
||||
ExponentialGridFunctionCoefficient(GridFunction &u_, Coefficient &obst_,
|
||||
double min_val_=0.0, double max_val_=1e6)
|
||||
real_t min_val_=0.0, real_t max_val_=1e6)
|
||||
: u(&u_), obstacle(&obst_), min_val(min_val_), max_val(max_val_) { }
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
virtual real_t Eval(ElementTransformation &T, const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
@@ -84,8 +84,8 @@ int main(int argc, char *argv[])
|
||||
int order = 1;
|
||||
int max_it = 10;
|
||||
int ref_levels = 3;
|
||||
double alpha = 1.0;
|
||||
double tol = 1e-5;
|
||||
real_t alpha = 1.0;
|
||||
real_t tol = 1e-5;
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
@@ -136,7 +136,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 3C. Rescale the domain to a unit circle (radius = 1).
|
||||
GridFunction *nodes = mesh.GetNodes();
|
||||
double scale = 2*sqrt(2);
|
||||
real_t scale = 2*sqrt(2);
|
||||
*nodes /= scale;
|
||||
|
||||
ParMesh pmesh(MPI_COMM_WORLD, mesh);
|
||||
@@ -192,8 +192,8 @@ int main(int argc, char *argv[])
|
||||
// 6. Define an initial guess for the solution.
|
||||
auto IC_func = [](const Vector &x)
|
||||
{
|
||||
double r0 = 1.0;
|
||||
double rr = 0.0;
|
||||
real_t r0 = 1.0;
|
||||
real_t rr = 0.0;
|
||||
for (int i=0; i<x.Size(); i++)
|
||||
{
|
||||
rr += x(i)*x(i);
|
||||
@@ -243,7 +243,7 @@ int main(int argc, char *argv[])
|
||||
// 10. Iterate
|
||||
int k;
|
||||
int total_iterations = 0;
|
||||
double increment_u = 0.1;
|
||||
real_t increment_u = 0.1;
|
||||
for (k = 0; k < max_it; k++)
|
||||
{
|
||||
ParGridFunction u_tmp(&H1fes);
|
||||
@@ -346,10 +346,10 @@ int main(int argc, char *argv[])
|
||||
delta_psi_gf.SetFromTrueDofs(tx.GetBlock(1));
|
||||
|
||||
u_tmp -= u_gf;
|
||||
double Newton_update_size = u_tmp.ComputeL2Error(zero);
|
||||
real_t Newton_update_size = u_tmp.ComputeL2Error(zero);
|
||||
u_tmp = u_gf;
|
||||
|
||||
double gamma = 1.0;
|
||||
real_t gamma = 1.0;
|
||||
delta_psi_gf *= gamma;
|
||||
psi_gf += delta_psi_gf;
|
||||
|
||||
@@ -391,7 +391,7 @@ int main(int argc, char *argv[])
|
||||
break;
|
||||
}
|
||||
|
||||
double H1_error = u_gf.ComputeH1Error(&exact_coef,&exact_grad_coef);
|
||||
real_t H1_error = u_gf.ComputeH1Error(&exact_coef,&exact_grad_coef);
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "H1-error (|| u - uₕᵏ||) = " << H1_error << endl;
|
||||
@@ -423,13 +423,13 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
{
|
||||
double L2_error = u_gf.ComputeL2Error(exact_coef);
|
||||
double H1_error = u_gf.ComputeH1Error(&exact_coef,&exact_grad_coef);
|
||||
real_t L2_error = u_gf.ComputeL2Error(exact_coef);
|
||||
real_t H1_error = u_gf.ComputeH1Error(&exact_coef,&exact_grad_coef);
|
||||
|
||||
ExponentialGridFunctionCoefficient u_alt_cf(psi_gf,obstacle);
|
||||
ParGridFunction u_alt_gf(&L2fes);
|
||||
u_alt_gf.ProjectCoefficient(u_alt_cf);
|
||||
double L2_error_alt = u_alt_gf.ComputeL2Error(exact_coef);
|
||||
real_t L2_error_alt = u_alt_gf.ComputeL2Error(exact_coef);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
@@ -444,35 +444,35 @@ int main(int argc, char *argv[])
|
||||
return 0;
|
||||
}
|
||||
|
||||
double LogarithmGridFunctionCoefficient::Eval(ElementTransformation &T,
|
||||
real_t LogarithmGridFunctionCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(u != NULL, "grid function is not set");
|
||||
|
||||
double val = u->GetValue(T, ip) - obstacle->Eval(T, ip);
|
||||
real_t val = u->GetValue(T, ip) - obstacle->Eval(T, ip);
|
||||
return max(min_val, log(val));
|
||||
}
|
||||
|
||||
double ExponentialGridFunctionCoefficient::Eval(ElementTransformation &T,
|
||||
real_t ExponentialGridFunctionCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(u != NULL, "grid function is not set");
|
||||
|
||||
double val = u->GetValue(T, ip);
|
||||
real_t val = u->GetValue(T, ip);
|
||||
return min(max_val, max(min_val, exp(val) + obstacle->Eval(T, ip)));
|
||||
}
|
||||
|
||||
double spherical_obstacle(const Vector &pt)
|
||||
real_t spherical_obstacle(const Vector &pt)
|
||||
{
|
||||
double x = pt(0), y = pt(1);
|
||||
double r = sqrt(x*x + y*y);
|
||||
double r0 = 0.5;
|
||||
double beta = 0.9;
|
||||
real_t x = pt(0), y = pt(1);
|
||||
real_t r = sqrt(x*x + y*y);
|
||||
real_t r0 = 0.5;
|
||||
real_t beta = 0.9;
|
||||
|
||||
double b = r0*beta;
|
||||
double tmp = sqrt(r0*r0 - b*b);
|
||||
double B = tmp + b*b/tmp;
|
||||
double C = -b/tmp;
|
||||
real_t b = r0*beta;
|
||||
real_t tmp = sqrt(r0*r0 - b*b);
|
||||
real_t B = tmp + b*b/tmp;
|
||||
real_t C = -b/tmp;
|
||||
|
||||
if (r > b)
|
||||
{
|
||||
@@ -484,13 +484,13 @@ double spherical_obstacle(const Vector &pt)
|
||||
}
|
||||
}
|
||||
|
||||
double exact_solution_obstacle(const Vector &pt)
|
||||
real_t exact_solution_obstacle(const Vector &pt)
|
||||
{
|
||||
double x = pt(0), y = pt(1);
|
||||
double r = sqrt(x*x + y*y);
|
||||
double r0 = 0.5;
|
||||
double a = 0.348982574111686;
|
||||
double A = -0.340129705945858;
|
||||
real_t x = pt(0), y = pt(1);
|
||||
real_t r = sqrt(x*x + y*y);
|
||||
real_t r0 = 0.5;
|
||||
real_t a = 0.348982574111686;
|
||||
real_t A = -0.340129705945858;
|
||||
|
||||
if (r > a)
|
||||
{
|
||||
@@ -504,11 +504,11 @@ double exact_solution_obstacle(const Vector &pt)
|
||||
|
||||
void exact_solution_gradient_obstacle(const Vector &pt, Vector &grad)
|
||||
{
|
||||
double x = pt(0), y = pt(1);
|
||||
double r = sqrt(x*x + y*y);
|
||||
double r0 = 0.5;
|
||||
double a = 0.348982574111686;
|
||||
double A = -0.340129705945858;
|
||||
real_t x = pt(0), y = pt(1);
|
||||
real_t r = sqrt(x*x + y*y);
|
||||
real_t r0 = 0.5;
|
||||
real_t a = 0.348982574111686;
|
||||
real_t A = -0.340129705945858;
|
||||
|
||||
if (r > a)
|
||||
{
|
||||
|
||||
+24
-24
@@ -67,9 +67,9 @@ using namespace mfem;
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Newton iteration tolerance
|
||||
* @param max_its Newton maximum iteration number
|
||||
* @return double Final volume, ∫_Ω sigmoid(ψ)
|
||||
* @return real_t Final volume, ∫_Ω sigmoid(ψ)
|
||||
*/
|
||||
double proj(GridFunction &psi, double target_volume, double tol=1e-12,
|
||||
real_t proj(GridFunction &psi, real_t target_volume, real_t tol=1e-12,
|
||||
int max_its=10)
|
||||
{
|
||||
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
|
||||
@@ -84,12 +84,12 @@ double proj(GridFunction &psi, double target_volume, double tol=1e-12,
|
||||
for (int k=0; k<max_its; k++) // Newton iteration
|
||||
{
|
||||
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
|
||||
const double f = int_sigmoid_psi.Sum() - target_volume;
|
||||
const real_t f = int_sigmoid_psi.Sum() - target_volume;
|
||||
|
||||
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
|
||||
const double df = int_der_sigmoid_psi.Sum();
|
||||
const real_t df = int_der_sigmoid_psi.Sum();
|
||||
|
||||
const double dc = -f/df;
|
||||
const real_t dc = -f/df;
|
||||
psi += dc;
|
||||
if (abs(dc) < tol) { done = true; break; }
|
||||
}
|
||||
@@ -179,15 +179,15 @@ int main(int argc, char *argv[])
|
||||
// 1. Parse command-line options.
|
||||
int ref_levels = 5;
|
||||
int order = 2;
|
||||
double alpha = 1.0;
|
||||
double epsilon = 0.01;
|
||||
double vol_fraction = 0.5;
|
||||
real_t alpha = 1.0;
|
||||
real_t epsilon = 0.01;
|
||||
real_t vol_fraction = 0.5;
|
||||
int max_it = 1e3;
|
||||
double itol = 1e-1;
|
||||
double ntol = 1e-4;
|
||||
double rho_min = 1e-6;
|
||||
double lambda = 1.0;
|
||||
double mu = 1.0;
|
||||
real_t itol = 1e-1;
|
||||
real_t ntol = 1e-4;
|
||||
real_t rho_min = 1e-6;
|
||||
real_t lambda = 1.0;
|
||||
real_t mu = 1.0;
|
||||
bool glvis_visualization = true;
|
||||
bool paraview_output = false;
|
||||
|
||||
@@ -239,8 +239,8 @@ int main(int argc, char *argv[])
|
||||
Array<int> vertices;
|
||||
be->GetVertices(vertices);
|
||||
|
||||
double * coords1 = mesh.GetVertex(vertices[0]);
|
||||
double * coords2 = mesh.GetVertex(vertices[1]);
|
||||
real_t * coords1 = mesh.GetVertex(vertices[0]);
|
||||
real_t * coords2 = mesh.GetVertex(vertices[1]);
|
||||
|
||||
Vector center(2);
|
||||
center(0) = 0.5*(coords1[0] + coords2[0]);
|
||||
@@ -312,7 +312,7 @@ int main(int argc, char *argv[])
|
||||
ElasticitySolver->SetupFEM();
|
||||
Vector center(2); center(0) = 2.9; center(1) = 0.5;
|
||||
Vector force(2); force(0) = 0.0; force(1) = -1.0;
|
||||
double r = 0.05;
|
||||
real_t r = 0.05;
|
||||
VolumeForceCoefficient vforce_cf(r,center,force);
|
||||
ElasticitySolver->SetRHSCoefficient(&vforce_cf);
|
||||
ElasticitySolver->SetEssentialBoundary(ess_bdr);
|
||||
@@ -353,8 +353,8 @@ int main(int argc, char *argv[])
|
||||
LinearForm vol_form(&control_fes);
|
||||
vol_form.AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
vol_form.Assemble();
|
||||
double domain_volume = vol_form(onegf);
|
||||
const double target_volume = domain_volume * vol_fraction;
|
||||
real_t domain_volume = vol_form(onegf);
|
||||
const real_t target_volume = domain_volume * vol_fraction;
|
||||
|
||||
// 10. Connect to GLVis. Prepare for VisIt output.
|
||||
char vishost[] = "localhost";
|
||||
@@ -385,7 +385,7 @@ int main(int argc, char *argv[])
|
||||
// 11. Iterate:
|
||||
for (int k = 1; k <= max_it; k++)
|
||||
{
|
||||
if (k > 1) { alpha *= ((double) k) / ((double) k-1); }
|
||||
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
|
||||
|
||||
mfem::out << "\nStep = " << k << std::endl;
|
||||
|
||||
@@ -422,14 +422,14 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Step 5 - Update design variable ψ ← proj(ψ - αG)
|
||||
psi.Add(-alpha, grad);
|
||||
const double material_volume = proj(psi, target_volume);
|
||||
const real_t material_volume = proj(psi, target_volume);
|
||||
|
||||
// Compute ||ρ - ρ_old|| in control fes.
|
||||
double norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
double norm_reduced_gradient = norm_increment/alpha;
|
||||
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
real_t norm_reduced_gradient = norm_increment/alpha;
|
||||
psi_old = psi;
|
||||
|
||||
double compliance = (*(ElasticitySolver->GetLinearForm()))(u);
|
||||
real_t compliance = (*(ElasticitySolver->GetLinearForm()))(u);
|
||||
mfem::out << "norm of the reduced gradient = " << norm_reduced_gradient <<
|
||||
std::endl;
|
||||
mfem::out << "norm of the increment = " << norm_increment << endl;
|
||||
@@ -449,7 +449,7 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
rho_gf.ProjectCoefficient(rho);
|
||||
paraview_dc.SetCycle(k);
|
||||
paraview_dc.SetTime((double)k);
|
||||
paraview_dc.SetTime((real_t)k);
|
||||
paraview_dc.Save();
|
||||
}
|
||||
|
||||
|
||||
+40
-40
@@ -9,15 +9,15 @@ namespace mfem
|
||||
{
|
||||
|
||||
/// @brief Inverse sigmoid function
|
||||
double inv_sigmoid(double x)
|
||||
real_t inv_sigmoid(real_t x)
|
||||
{
|
||||
double tol = 1e-12;
|
||||
x = std::min(std::max(tol,x),1.0-tol);
|
||||
real_t tol = 1e-12;
|
||||
x = std::min(std::max(tol,x), real_t(1.0)-tol);
|
||||
return std::log(x/(1.0-x));
|
||||
}
|
||||
|
||||
/// @brief Sigmoid function
|
||||
double sigmoid(double x)
|
||||
real_t sigmoid(real_t x)
|
||||
{
|
||||
if (x >= 0)
|
||||
{
|
||||
@@ -30,9 +30,9 @@ double sigmoid(double x)
|
||||
}
|
||||
|
||||
/// @brief Derivative of sigmoid function
|
||||
double der_sigmoid(double x)
|
||||
real_t der_sigmoid(real_t x)
|
||||
{
|
||||
double tmp = sigmoid(-x);
|
||||
real_t tmp = sigmoid(-x);
|
||||
return tmp - std::pow(tmp,2);
|
||||
}
|
||||
|
||||
@@ -40,24 +40,24 @@ double der_sigmoid(double x)
|
||||
class MappedGridFunctionCoefficient : public GridFunctionCoefficient
|
||||
{
|
||||
protected:
|
||||
std::function<double(const double)> fun; // f:R → R
|
||||
std::function<real_t(const real_t)> fun; // f:R → R
|
||||
public:
|
||||
MappedGridFunctionCoefficient()
|
||||
:GridFunctionCoefficient(),
|
||||
fun([](double x) {return x;}) {}
|
||||
fun([](real_t x) {return x;}) {}
|
||||
MappedGridFunctionCoefficient(const GridFunction *gf,
|
||||
std::function<double(const double)> fun_,
|
||||
std::function<real_t(const real_t)> fun_,
|
||||
int comp=1)
|
||||
:GridFunctionCoefficient(gf, comp),
|
||||
fun(fun_) {}
|
||||
|
||||
|
||||
virtual double Eval(ElementTransformation &T,
|
||||
virtual real_t Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
return fun(GridFunctionCoefficient::Eval(T, ip));
|
||||
}
|
||||
void SetFunction(std::function<double(const double)> fun_) { fun = fun_; }
|
||||
void SetFunction(std::function<real_t(const real_t)> fun_) { fun = fun_; }
|
||||
};
|
||||
|
||||
|
||||
@@ -67,30 +67,30 @@ class DiffMappedGridFunctionCoefficient : public GridFunctionCoefficient
|
||||
protected:
|
||||
const GridFunction *OtherGridF;
|
||||
GridFunctionCoefficient OtherGridF_cf;
|
||||
std::function<double(const double)> fun; // f:R → R
|
||||
std::function<real_t(const real_t)> fun; // f:R → R
|
||||
public:
|
||||
DiffMappedGridFunctionCoefficient()
|
||||
:GridFunctionCoefficient(),
|
||||
OtherGridF(nullptr),
|
||||
OtherGridF_cf(),
|
||||
fun([](double x) {return x;}) {}
|
||||
fun([](real_t x) {return x;}) {}
|
||||
DiffMappedGridFunctionCoefficient(const GridFunction *gf,
|
||||
const GridFunction *other_gf,
|
||||
std::function<double(const double)> fun_,
|
||||
std::function<real_t(const real_t)> fun_,
|
||||
int comp=1)
|
||||
:GridFunctionCoefficient(gf, comp),
|
||||
OtherGridF(other_gf),
|
||||
OtherGridF_cf(OtherGridF),
|
||||
fun(fun_) {}
|
||||
|
||||
virtual double Eval(ElementTransformation &T,
|
||||
virtual real_t Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
const double value1 = fun(GridFunctionCoefficient::Eval(T, ip));
|
||||
const double value2 = fun(OtherGridF_cf.Eval(T, ip));
|
||||
const real_t value1 = fun(GridFunctionCoefficient::Eval(T, ip));
|
||||
const real_t value2 = fun(OtherGridF_cf.Eval(T, ip));
|
||||
return value1 - value2;
|
||||
}
|
||||
void SetFunction(std::function<double(const double)> fun_) { fun = fun_; }
|
||||
void SetFunction(std::function<real_t(const real_t)> fun_) { fun = fun_; }
|
||||
};
|
||||
|
||||
/// @brief Solid isotropic material penalization (SIMP) coefficient
|
||||
@@ -98,20 +98,20 @@ class SIMPInterpolationCoefficient : public Coefficient
|
||||
{
|
||||
protected:
|
||||
GridFunction *rho_filter;
|
||||
double min_val;
|
||||
double max_val;
|
||||
double exponent;
|
||||
real_t min_val;
|
||||
real_t max_val;
|
||||
real_t exponent;
|
||||
|
||||
public:
|
||||
SIMPInterpolationCoefficient(GridFunction *rho_filter_, double min_val_= 1e-6,
|
||||
double max_val_ = 1.0, double exponent_ = 3)
|
||||
SIMPInterpolationCoefficient(GridFunction *rho_filter_, real_t min_val_= 1e-6,
|
||||
real_t max_val_ = 1.0, real_t exponent_ = 3)
|
||||
: rho_filter(rho_filter_), min_val(min_val_), max_val(max_val_),
|
||||
exponent(exponent_) { }
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip)
|
||||
virtual real_t Eval(ElementTransformation &T, const IntegrationPoint &ip)
|
||||
{
|
||||
double val = rho_filter->GetValue(T, ip);
|
||||
double coeff = min_val + pow(val,exponent)*(max_val-min_val);
|
||||
real_t val = rho_filter->GetValue(T, ip);
|
||||
real_t coeff = min_val + pow(val,exponent)*(max_val-min_val);
|
||||
return coeff;
|
||||
}
|
||||
};
|
||||
@@ -126,13 +126,13 @@ protected:
|
||||
GridFunction *u = nullptr; // displacement
|
||||
GridFunction *rho_filter = nullptr; // filter density
|
||||
DenseMatrix grad; // auxiliary matrix, used in Eval
|
||||
double exponent;
|
||||
double rho_min;
|
||||
real_t exponent;
|
||||
real_t rho_min;
|
||||
|
||||
public:
|
||||
StrainEnergyDensityCoefficient(Coefficient *lambda_, Coefficient *mu_,
|
||||
GridFunction * u_, GridFunction * rho_filter_, double rho_min_=1e-6,
|
||||
double exponent_ = 3.0)
|
||||
GridFunction * u_, GridFunction * rho_filter_, real_t rho_min_=1e-6,
|
||||
real_t exponent_ = 3.0)
|
||||
: lambda(lambda_), mu(mu_), u(u_), rho_filter(rho_filter_),
|
||||
exponent(exponent_), rho_min(rho_min_)
|
||||
{
|
||||
@@ -142,13 +142,13 @@ public:
|
||||
MFEM_ASSERT(rho_filter, "density field is not set");
|
||||
}
|
||||
|
||||
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip)
|
||||
virtual real_t Eval(ElementTransformation &T, const IntegrationPoint &ip)
|
||||
{
|
||||
double L = lambda->Eval(T, ip);
|
||||
double M = mu->Eval(T, ip);
|
||||
real_t L = lambda->Eval(T, ip);
|
||||
real_t M = mu->Eval(T, ip);
|
||||
u->GetVectorGradient(T, grad);
|
||||
double div_u = grad.Trace();
|
||||
double density = L*div_u*div_u;
|
||||
real_t div_u = grad.Trace();
|
||||
real_t density = L*div_u*div_u;
|
||||
int dim = T.GetSpaceDim();
|
||||
for (int i=0; i<dim; i++)
|
||||
{
|
||||
@@ -157,7 +157,7 @@ public:
|
||||
density += M*grad(i,j)*(grad(i,j)+grad(j,i));
|
||||
}
|
||||
}
|
||||
double val = rho_filter->GetValue(T,ip);
|
||||
real_t val = rho_filter->GetValue(T,ip);
|
||||
|
||||
return -exponent * pow(val, exponent-1.0) * (1-rho_min) * density;
|
||||
}
|
||||
@@ -167,11 +167,11 @@ public:
|
||||
class VolumeForceCoefficient : public VectorCoefficient
|
||||
{
|
||||
private:
|
||||
double r;
|
||||
real_t r;
|
||||
Vector center;
|
||||
Vector force;
|
||||
public:
|
||||
VolumeForceCoefficient(double r_,Vector & center_, Vector & force_) :
|
||||
VolumeForceCoefficient(real_t r_,Vector & center_, Vector & force_) :
|
||||
VectorCoefficient(center_.Size()), r(r_), center(center_), force(force_) { }
|
||||
|
||||
using VectorCoefficient::Eval;
|
||||
@@ -186,7 +186,7 @@ public:
|
||||
xx[i]=xx[i]-center[i];
|
||||
}
|
||||
|
||||
double cr=xx.Norml2();
|
||||
real_t cr=xx.Norml2();
|
||||
V.SetSize(T.GetDimension());
|
||||
if (cr <= r)
|
||||
{
|
||||
@@ -198,7 +198,7 @@ public:
|
||||
}
|
||||
}
|
||||
|
||||
void Set(double r_,Vector & center_, Vector & force_)
|
||||
void Set(real_t r_,Vector & center_, Vector & force_)
|
||||
{
|
||||
r=r_;
|
||||
center = center_;
|
||||
|
||||
+33
-30
@@ -66,9 +66,9 @@ using namespace mfem;
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Newton iteration tolerance
|
||||
* @param max_its Newton maximum iteration number
|
||||
* @return double Final volume, ∫_Ω sigmoid(ψ)
|
||||
* @return real_t Final volume, ∫_Ω sigmoid(ψ)
|
||||
*/
|
||||
double proj(ParGridFunction &psi, double target_volume, double tol=1e-12,
|
||||
real_t proj(ParGridFunction &psi, real_t target_volume, real_t tol=1e-12,
|
||||
int max_its=10)
|
||||
{
|
||||
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
|
||||
@@ -83,15 +83,17 @@ double proj(ParGridFunction &psi, double target_volume, double tol=1e-12,
|
||||
for (int k=0; k<max_its; k++) // Newton iteration
|
||||
{
|
||||
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
|
||||
double f = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
|
||||
real_t f = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
f -= target_volume;
|
||||
|
||||
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
|
||||
double df = int_der_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &df, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
|
||||
real_t df = int_der_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &df, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
|
||||
const double dc = -f/df;
|
||||
const real_t dc = -f/df;
|
||||
psi += dc;
|
||||
if (abs(dc) < tol) { done = true; break; }
|
||||
}
|
||||
@@ -101,9 +103,9 @@ double proj(ParGridFunction &psi, double target_volume, double tol=1e-12,
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
int_sigmoid_psi.Assemble();
|
||||
double material_volume = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1, MPI_DOUBLE, MPI_SUM,
|
||||
MPI_COMM_WORLD);
|
||||
real_t material_volume = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1,
|
||||
MPITypeMap<real_t>::mpi_type, MPI_SUM, MPI_COMM_WORLD);
|
||||
return material_volume;
|
||||
}
|
||||
|
||||
@@ -190,15 +192,15 @@ int main(int argc, char *argv[])
|
||||
// 1. Parse command-line options.
|
||||
int ref_levels = 5;
|
||||
int order = 2;
|
||||
double alpha = 1.0;
|
||||
double epsilon = 0.01;
|
||||
double vol_fraction = 0.5;
|
||||
real_t alpha = 1.0;
|
||||
real_t epsilon = 0.01;
|
||||
real_t vol_fraction = 0.5;
|
||||
int max_it = 1e3;
|
||||
double itol = 1e-1;
|
||||
double ntol = 1e-4;
|
||||
double rho_min = 1e-6;
|
||||
double lambda = 1.0;
|
||||
double mu = 1.0;
|
||||
real_t itol = 1e-1;
|
||||
real_t ntol = 1e-4;
|
||||
real_t rho_min = 1e-6;
|
||||
real_t lambda = 1.0;
|
||||
real_t mu = 1.0;
|
||||
bool glvis_visualization = true;
|
||||
bool paraview_output = false;
|
||||
|
||||
@@ -258,8 +260,8 @@ int main(int argc, char *argv[])
|
||||
Array<int> vertices;
|
||||
be->GetVertices(vertices);
|
||||
|
||||
double * coords1 = mesh.GetVertex(vertices[0]);
|
||||
double * coords2 = mesh.GetVertex(vertices[1]);
|
||||
real_t * coords1 = mesh.GetVertex(vertices[0]);
|
||||
real_t * coords2 = mesh.GetVertex(vertices[1]);
|
||||
|
||||
Vector center(2);
|
||||
center(0) = 0.5*(coords1[0] + coords2[0]);
|
||||
@@ -337,7 +339,7 @@ int main(int argc, char *argv[])
|
||||
ElasticitySolver->SetupFEM();
|
||||
Vector center(2); center(0) = 2.9; center(1) = 0.5;
|
||||
Vector force(2); force(0) = 0.0; force(1) = -1.0;
|
||||
double r = 0.05;
|
||||
real_t r = 0.05;
|
||||
VolumeForceCoefficient vforce_cf(r,center,force);
|
||||
ElasticitySolver->SetRHSCoefficient(&vforce_cf);
|
||||
ElasticitySolver->SetEssentialBoundary(ess_bdr);
|
||||
@@ -378,8 +380,8 @@ int main(int argc, char *argv[])
|
||||
ParLinearForm vol_form(&control_fes);
|
||||
vol_form.AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
vol_form.Assemble();
|
||||
double domain_volume = vol_form(onegf);
|
||||
const double target_volume = domain_volume * vol_fraction;
|
||||
real_t domain_volume = vol_form(onegf);
|
||||
const real_t target_volume = domain_volume * vol_fraction;
|
||||
|
||||
// 10. Connect to GLVis. Prepare for VisIt output.
|
||||
char vishost[] = "localhost";
|
||||
@@ -410,7 +412,7 @@ int main(int argc, char *argv[])
|
||||
// 11. Iterate:
|
||||
for (int k = 1; k <= max_it; k++)
|
||||
{
|
||||
if (k > 1) { alpha *= ((double) k) / ((double) k-1); }
|
||||
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
@@ -450,15 +452,16 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Step 5 - Update design variable ψ ← proj(ψ - αG)
|
||||
psi.Add(-alpha, grad);
|
||||
const double material_volume = proj(psi, target_volume);
|
||||
const real_t material_volume = proj(psi, target_volume);
|
||||
|
||||
// Compute ||ρ - ρ_old|| in control fes.
|
||||
double norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
double norm_reduced_gradient = norm_increment/alpha;
|
||||
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
real_t norm_reduced_gradient = norm_increment/alpha;
|
||||
psi_old = psi;
|
||||
|
||||
double compliance = (*(ElasticitySolver->GetLinearForm()))(u);
|
||||
MPI_Allreduce(MPI_IN_PLACE,&compliance,1,MPI_DOUBLE,MPI_SUM,MPI_COMM_WORLD);
|
||||
real_t compliance = (*(ElasticitySolver->GetLinearForm()))(u);
|
||||
MPI_Allreduce(MPI_IN_PLACE, &compliance, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "norm of the reduced gradient = " << norm_reduced_gradient << endl;
|
||||
@@ -480,7 +483,7 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
rho_gf.ProjectCoefficient(rho);
|
||||
paraview_dc.SetCycle(k);
|
||||
paraview_dc.SetTime((double)k);
|
||||
paraview_dc.SetTime((real_t)k);
|
||||
paraview_dc.Save();
|
||||
}
|
||||
|
||||
|
||||
+12
-13
@@ -46,7 +46,7 @@ enum class IntegrationType { Volumetric1D, Surface2D, Volumetric2D,
|
||||
IntegrationType itype;
|
||||
|
||||
/// @brief Level-set function defining the implicit interface
|
||||
double lvlset(const Vector& X)
|
||||
real_t lvlset(const Vector& X)
|
||||
{
|
||||
switch (itype)
|
||||
{
|
||||
@@ -66,7 +66,7 @@ double lvlset(const Vector& X)
|
||||
}
|
||||
|
||||
/// @brief Function that should be integrated
|
||||
double integrand(const Vector& X)
|
||||
real_t integrand(const Vector& X)
|
||||
{
|
||||
switch (itype)
|
||||
{
|
||||
@@ -86,7 +86,7 @@ double integrand(const Vector& X)
|
||||
}
|
||||
|
||||
/// @brief Analytic surface integral
|
||||
double Surface()
|
||||
real_t Surface()
|
||||
{
|
||||
switch (itype)
|
||||
{
|
||||
@@ -106,7 +106,7 @@ double Surface()
|
||||
}
|
||||
|
||||
/// @brief Analytic volume integral over subdomain with positive level-set
|
||||
double Volume()
|
||||
real_t Volume()
|
||||
{
|
||||
switch (itype)
|
||||
{
|
||||
@@ -199,7 +199,6 @@ public:
|
||||
{
|
||||
mesh->GetElementTransformation(elem, &Tr);
|
||||
MFIRs.GetSurfaceIntegrationRule(Tr, ir);
|
||||
Vector w;
|
||||
MFIRs.GetSurfaceWeights(Tr, ir, w);
|
||||
SurfaceWeights.SetCol(elem, w);
|
||||
|
||||
@@ -424,7 +423,7 @@ public:
|
||||
for (int ip = 0; ip < SIntRule->GetNPoints(); ip++)
|
||||
{
|
||||
Tr.SetIntPoint((&(SIntRule->IntPoint(ip))));
|
||||
double val = Tr.Weight() * Q.Eval(Tr, SIntRule->IntPoint(ip));
|
||||
real_t val = Tr.Weight() * Q.Eval(Tr, SIntRule->IntPoint(ip));
|
||||
el.CalcShape(SIntRule->IntPoint(ip), shape);
|
||||
add(elvect, SIntRule->IntPoint(ip).weight * val, shape, elvect);
|
||||
}
|
||||
@@ -492,7 +491,7 @@ public:
|
||||
for (int ip = 0; ip < CIntRule->GetNPoints(); ip++)
|
||||
{
|
||||
Tr.SetIntPoint((&(CIntRule->IntPoint(ip))));
|
||||
double val = Tr.Weight()
|
||||
real_t val = Tr.Weight()
|
||||
* Q.Eval(Tr, CIntRule->IntPoint(ip));
|
||||
el.CalcPhysShape(Tr, shape);
|
||||
add(elvect, CIntRule->IntPoint(ip).weight * val, shape, elvect);
|
||||
@@ -504,8 +503,8 @@ public:
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
#ifndef MFEM_USE_LAPACK
|
||||
cout << "MFEM must be build with LAPACK for this example." << endl;
|
||||
return EXIT_FAILURE;
|
||||
cout << "MFEM must be built with LAPACK for this example." << endl;
|
||||
return MFEM_SKIP_RETURN_VALUE;
|
||||
#else
|
||||
// 1. Parse he command-line options.
|
||||
int ref_levels = 3;
|
||||
@@ -636,11 +635,11 @@ int main(int argc, char *argv[])
|
||||
cout << "Mesh size dx: ";
|
||||
if (itype != IntegrationType::Volumetric1D)
|
||||
{
|
||||
cout << 3.2 / pow(2., (double)ref_levels) << endl;
|
||||
cout << 3.2 / pow(2., (real_t)ref_levels) << endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
cout << .25 / pow(2., (double)ref_levels) << endl;
|
||||
cout << .25 / pow(2., (real_t)ref_levels) << endl;
|
||||
}
|
||||
if (itype == IntegrationType::Surface2D
|
||||
|| itype == IntegrationType::Volumetric2D)
|
||||
@@ -652,7 +651,7 @@ int main(int argc, char *argv[])
|
||||
cout << "============================================" << endl;
|
||||
cout << "Computed value of surface integral: " << surface.Sum() << endl;
|
||||
cout << "True value of surface integral: " << Surface() << endl;
|
||||
cout << "Absolut Error (Surface): ";
|
||||
cout << "Absolute Error (Surface): ";
|
||||
cout << abs(surface.Sum() - Surface()) << endl;
|
||||
cout << "Relative Error (Surface): ";
|
||||
cout << abs(surface.Sum() - Surface()) / Surface() << endl;
|
||||
@@ -663,7 +662,7 @@ int main(int argc, char *argv[])
|
||||
cout << "--------------------------------------------" << endl;
|
||||
cout << "Computed value of volume integral: " << volume.Sum() << endl;
|
||||
cout << "True value of volume integral: " << Volume() << endl;
|
||||
cout << "Absolut Error (Volume): ";
|
||||
cout << "Absolute Error (Volume): ";
|
||||
cout << abs(volume.Sum() - Volume()) << endl;
|
||||
cout << "Relative Error (Volume): ";
|
||||
cout << abs(volume.Sum() - Volume()) / Volume() << endl;
|
||||
|
||||
@@ -0,0 +1,285 @@
|
||||
// MFEM Example 39
|
||||
//
|
||||
// Compile with: make ex39
|
||||
//
|
||||
// Sample runs: ex39
|
||||
// ex39 -ess "Southern Boundary"
|
||||
// ex39 -src Base
|
||||
//
|
||||
// Description: This example code demonstrates the use of named attribute
|
||||
// sets in MFEM to specify material regions, boundary regions,
|
||||
// or source regions by name rather than attribute numbers. It
|
||||
// also demonstrates how new named attribute sets may be created
|
||||
// from arbitrary groupings of attribute numbers and used as a
|
||||
// convenient shorthand to refer to those groupings in other
|
||||
// portions of the application or through the command line.
|
||||
//
|
||||
// The particular problem being solved here is nearly the same
|
||||
// as that in example 1 i.e. a simple finite element
|
||||
// discretization of the Laplace problem -Delta u = 1 with
|
||||
// homogeneous Dirichlet boundary conditions and, in this case,
|
||||
// an inhomogeneous diffusion coefficient. The diffusion
|
||||
// coefficient is given a small default value throughout the
|
||||
// domain which is increased by two separate amounts in two named
|
||||
// regions.
|
||||
//
|
||||
// This example makes use of a specific input mesh, "compass.msh",
|
||||
// containing named domain and boundary regions generated by Gmsh
|
||||
// and stored in their "msh" format (version 2.2). This file
|
||||
// defines eight boundary regions corresponding to eight compass
|
||||
// headings; "ENE", "NNE", "NNW", "WSW", "SSW", "SSE", and "ESE".
|
||||
// It also defines nine domain regions; "Base", "N Even", "N Odd",
|
||||
// "W Even", "W Odd", "S Even", "S Odd", "E Even", and "E Odd".
|
||||
// These regions split the four compass pointers into two halves
|
||||
// each and also label the remaining elements as "Base". Starting
|
||||
// with these named regions we test the construction of named
|
||||
// sets as well as reading and writing these named groupings from
|
||||
// and to mesh files.
|
||||
//
|
||||
// The example highlights the use of named attribute sets for
|
||||
// both subdomains and boundaries in different contexts as well
|
||||
// as basic methods to create named sets from existing attributes.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command-line options.
|
||||
const char *mesh_file = "../data/compass.msh";
|
||||
int order = 1;
|
||||
string source_name = "Rose Even";
|
||||
string ess_name = "Boundary";
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree) or -1 for"
|
||||
" isoparametric space.");
|
||||
args.AddOption(&source_name,"-src","--source-attr-name",
|
||||
"Name of attribute set containing source.");
|
||||
args.AddOption(&ess_name,"-ess","--ess-attr-name",
|
||||
"Name of attribute set containing essential BC.");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.ParseCheck();
|
||||
|
||||
// 2. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
|
||||
// the same code.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
|
||||
// 3. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
|
||||
// largest number that gives a final mesh with no more than 50,000
|
||||
// elements.
|
||||
{
|
||||
int ref_levels =
|
||||
(int)floor(log(50000./mesh.GetNE())/log(2.)/dim);
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 4a. Display attribute set names contained in the initial mesh
|
||||
AttributeSets &attr_sets = mesh.attribute_sets;
|
||||
AttributeSets &bdr_attr_sets = mesh.bdr_attribute_sets;
|
||||
{
|
||||
std::set<string> names = attr_sets.GetAttributeSetNames();
|
||||
cout << "Element Attribute Set Names: ";
|
||||
for (auto const &set_name : names)
|
||||
{
|
||||
cout << " \"" << set_name << "\"";
|
||||
}
|
||||
cout << endl;
|
||||
|
||||
std::set<string> bdr_names = bdr_attr_sets.GetAttributeSetNames();
|
||||
cout << "Boundary Attribute Set Names: ";
|
||||
for (auto const &bdr_set_name : bdr_names)
|
||||
{
|
||||
cout << " \"" << bdr_set_name << "\"";
|
||||
}
|
||||
cout << endl;
|
||||
}
|
||||
|
||||
// 4b. Define new regions based on existing attribute sets
|
||||
{
|
||||
Array<int> & Na = attr_sets.GetAttributeSet("N Even");
|
||||
Array<int> & Nb = attr_sets.GetAttributeSet("N Odd");
|
||||
Array<int> & Sa = attr_sets.GetAttributeSet("S Even");
|
||||
Array<int> & Sb = attr_sets.GetAttributeSet("S Odd");
|
||||
Array<int> & Ea = attr_sets.GetAttributeSet("E Even");
|
||||
Array<int> & Eb = attr_sets.GetAttributeSet("E Odd");
|
||||
Array<int> & Wa = attr_sets.GetAttributeSet("W Even");
|
||||
Array<int> & Wb = attr_sets.GetAttributeSet("W Odd");
|
||||
|
||||
// Create a new set spanning the North point
|
||||
attr_sets.SetAttributeSet("North", Na);
|
||||
attr_sets.AddToAttributeSet("North", Nb);
|
||||
|
||||
// Create a new set spanning the South point
|
||||
attr_sets.SetAttributeSet("South", Sa);
|
||||
attr_sets.AddToAttributeSet("South", Sb);
|
||||
|
||||
// Create a new set spanning the East point
|
||||
attr_sets.SetAttributeSet("East", Ea);
|
||||
attr_sets.AddToAttributeSet("East", Eb);
|
||||
|
||||
// Create a new set spanning the West point
|
||||
attr_sets.SetAttributeSet("West", Wa);
|
||||
attr_sets.AddToAttributeSet("West", Wb);
|
||||
|
||||
// Create a new set consisting of the "a" sides of the compass rose
|
||||
attr_sets.SetAttributeSet("Rose Even", Na);
|
||||
attr_sets.AddToAttributeSet("Rose Even", Sa);
|
||||
attr_sets.AddToAttributeSet("Rose Even", Ea);
|
||||
attr_sets.AddToAttributeSet("Rose Even", Wa);
|
||||
|
||||
// Create a new set consisting of the "b" sides of the compass rose
|
||||
attr_sets.SetAttributeSet("Rose Odd", Nb);
|
||||
attr_sets.AddToAttributeSet("Rose Odd", Sb);
|
||||
attr_sets.AddToAttributeSet("Rose Odd", Eb);
|
||||
attr_sets.AddToAttributeSet("Rose Odd", Wb);
|
||||
|
||||
// Create a new set consisting of the full compass rose
|
||||
Array<int> & Ra = attr_sets.GetAttributeSet("Rose Even");
|
||||
Array<int> & Rb = attr_sets.GetAttributeSet("Rose Odd");
|
||||
attr_sets.SetAttributeSet("Rose", Ra);
|
||||
attr_sets.AddToAttributeSet("Rose", Rb);
|
||||
}
|
||||
// 4c. Define new boundary regions based on existing boundary attribute sets
|
||||
{
|
||||
Array<int> & NNE = bdr_attr_sets.GetAttributeSet("NNE");
|
||||
Array<int> & NNW = bdr_attr_sets.GetAttributeSet("NNW");
|
||||
Array<int> & ENE = bdr_attr_sets.GetAttributeSet("ENE");
|
||||
Array<int> & ESE = bdr_attr_sets.GetAttributeSet("ESE");
|
||||
Array<int> & SSE = bdr_attr_sets.GetAttributeSet("SSE");
|
||||
Array<int> & SSW = bdr_attr_sets.GetAttributeSet("SSW");
|
||||
Array<int> & WNW = bdr_attr_sets.GetAttributeSet("WNW");
|
||||
Array<int> & WSW = bdr_attr_sets.GetAttributeSet("WSW");
|
||||
|
||||
bdr_attr_sets.SetAttributeSet("Northern Boundary", NNE);
|
||||
bdr_attr_sets.AddToAttributeSet("Northern Boundary", NNW);
|
||||
|
||||
bdr_attr_sets.SetAttributeSet("Southern Boundary", SSE);
|
||||
bdr_attr_sets.AddToAttributeSet("Southern Boundary", SSW);
|
||||
|
||||
bdr_attr_sets.SetAttributeSet("Eastern Boundary", ENE);
|
||||
bdr_attr_sets.AddToAttributeSet("Eastern Boundary", ESE);
|
||||
|
||||
bdr_attr_sets.SetAttributeSet("Western Boundary", WNW);
|
||||
bdr_attr_sets.AddToAttributeSet("Western Boundary", WSW);
|
||||
|
||||
bdr_attr_sets.SetAttributeSet("Boundary",
|
||||
bdr_attr_sets.GetAttributeSet
|
||||
("Northern Boundary"));
|
||||
bdr_attr_sets.AddToAttributeSet("Boundary",
|
||||
bdr_attr_sets.GetAttributeSet
|
||||
("Southern Boundary"));
|
||||
bdr_attr_sets.AddToAttributeSet("Boundary",
|
||||
bdr_attr_sets.GetAttributeSet
|
||||
("Eastern Boundary"));
|
||||
bdr_attr_sets.AddToAttributeSet("Boundary",
|
||||
bdr_attr_sets.GetAttributeSet
|
||||
("Western Boundary"));
|
||||
}
|
||||
|
||||
// 5. Define a finite element space on the mesh. Here we use continuous
|
||||
// Lagrange finite elements of the specified order.
|
||||
H1_FECollection fec(order, mesh.Dimension());
|
||||
FiniteElementSpace fespace(&mesh, &fec);
|
||||
cout << "Number of finite element unknowns: "
|
||||
<< fespace.GetTrueVSize() << endl;
|
||||
|
||||
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
// In this example, the boundary conditions are defined by marking all
|
||||
// the boundary regions corresponding to the boundary attributes
|
||||
// contained in the set named "ess_name" as essential (Dirichlet) and
|
||||
// converting them to a list of true dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
if (bdr_attr_sets.AttributeSetExists(ess_name))
|
||||
{
|
||||
Array<int> ess_bdr_marker = bdr_attr_sets.GetAttributeSetMarker(ess_name);
|
||||
fespace.GetEssentialTrueDofs(ess_bdr_marker, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 7. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// the FEM linear system, which in this case is (1_s,phi_i) where phi_i
|
||||
// are the basis functions in fespace and 1_s is an indicator function
|
||||
// equal to 1 on the region defined by the named set "source_name" and
|
||||
// zero elsewhere.
|
||||
Array<int> source_marker = attr_sets.GetAttributeSetMarker(source_name);
|
||||
|
||||
LinearForm b(&fespace);
|
||||
ConstantCoefficient one(1.0);
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(one), source_marker);
|
||||
b.Assemble();
|
||||
|
||||
// 8. Define the solution vector x as a finite element grid function
|
||||
// corresponding to fespace. Initialize x with initial guess of zero,
|
||||
// which satisfies the boundary conditions.
|
||||
GridFunction x(&fespace);
|
||||
x = 0.0;
|
||||
|
||||
// 9. Set up the bilinear form a(.,.) on the finite element space
|
||||
// corresponding to the Laplacian operator -Delta, by adding the
|
||||
// Diffusion domain integrator.
|
||||
BilinearForm a(&fespace);
|
||||
|
||||
ConstantCoefficient defaultCoef(1.0e-6);
|
||||
ConstantCoefficient baseCoef(1.0);
|
||||
ConstantCoefficient roseCoef(2.0);
|
||||
|
||||
Array<int> base_marker = attr_sets.GetAttributeSetMarker("Base");
|
||||
Array<int> rose_marker = attr_sets.GetAttributeSetMarker("Rose Even");
|
||||
|
||||
// Impose a very small diffusion coefficient across the entire mesh
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(defaultCoef));
|
||||
|
||||
// Impose an additional, stronger diffusion coefficient in select regions
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(baseCoef), base_marker);
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(roseCoef), rose_marker);
|
||||
|
||||
// 10. Assemble the bilinear form and the corresponding linear system,
|
||||
// applying any necessary transformations.
|
||||
a.Assemble();
|
||||
|
||||
SparseMatrix A;
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
|
||||
|
||||
cout << "Size of linear system: " << A.Height() << endl;
|
||||
|
||||
// 11. Solve the system using PCG with symmetric Gauss-Seidel preconditioner.
|
||||
GSSmoother M(A);
|
||||
PCG(A, M, B, X, 1, 800, 1e-12, 0.0);
|
||||
|
||||
// 12. Recover the solution as a finite element grid function.
|
||||
a.RecoverFEMSolution(X, b, x);
|
||||
|
||||
// 13. Save the refined mesh and the solution. This output can be viewed
|
||||
// later using GLVis: "glvis -m refined.mesh -g sol.gf".
|
||||
mesh.Save("refined.mesh");
|
||||
x.Save("sol.gf");
|
||||
|
||||
// 14. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << mesh << x << "keys Rjmm" << flush;
|
||||
}
|
||||
|
||||
return 0;
|
||||
}
|
||||
@@ -0,0 +1,314 @@
|
||||
// MFEM Example 39 - Parallel Version
|
||||
//
|
||||
// Compile with: make ex39p
|
||||
//
|
||||
// Sample runs: mpirun -np 4 ex39p
|
||||
// mpirun -np 4 ex39p -ess "Southern Boundary"
|
||||
// mpirun -np 4 ex39p -src Base
|
||||
//
|
||||
// Description: This example code demonstrates the use of named attribute
|
||||
// sets in MFEM to specify material regions, boundary regions,
|
||||
// or source regions by name rather than attribute numbers. It
|
||||
// also demonstrates how new named attribute sets may be created
|
||||
// from arbitrary groupings of attribute numbers and used as a
|
||||
// convenient shorthand to refer to those groupings in other
|
||||
// portions of the application or through the command line.
|
||||
//
|
||||
// The particular problem being solved here is nearly the same
|
||||
// as that in example 1 i.e. a simple finite element
|
||||
// discretization of the Laplace problem -Delta u = 1 with
|
||||
// homogeneous Dirichlet boundary conditions and, in this case,
|
||||
// an inhomogeneous diffusion coefficient. The diffusion
|
||||
// coefficient is given a small default value throughout the
|
||||
// domain which is increased by two separate amounts in two named
|
||||
// regions.
|
||||
//
|
||||
// This example makes use of a specific input mesh, "compass.msh",
|
||||
// containing named domain and boundary regions generated by Gmsh
|
||||
// and stored in their "msh" format (version 2.2). This file
|
||||
// defines eight boundary regions corresponding to eight compass
|
||||
// headings; "ENE", "NNE", "NNW", "WSW", "SSW", "SSE", and "ESE".
|
||||
// It also defines nine domain regions; "Base", "N Even", "N Odd",
|
||||
// "W Even", "W Odd", "S Even", "S Odd", "E Even", and "E Odd".
|
||||
// These regions split the four compass pointers into two halves
|
||||
// each and also label the remaining elements as "Base". Starting
|
||||
// with these named regions we test the construction of named
|
||||
// sets as well as reading and writing these named groupings from
|
||||
// and to mesh files.
|
||||
//
|
||||
// The example highlights the use of named attribute sets for
|
||||
// both subdomains and boundaries in different contexts as well
|
||||
// as basic methods to create named sets from existing attributes.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Initialize MPI and HYPRE.
|
||||
Mpi::Init();
|
||||
Hypre::Init();
|
||||
|
||||
// 2. Parse command-line options.
|
||||
const char *mesh_file = "../data/compass.msh";
|
||||
int order = 1;
|
||||
string source_name = "Rose Even";
|
||||
string ess_name = "Boundary";
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree) or -1 for"
|
||||
" isoparametric space.");
|
||||
args.AddOption(&source_name,"-src","--source-attr-name",
|
||||
"Name of attribute set containing source.");
|
||||
args.AddOption(&ess_name,"-ess","--ess-attr-name",
|
||||
"Name of attribute set containing essential BC.");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.ParseCheck();
|
||||
|
||||
// 3. Read the serial mesh from the given mesh file.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
|
||||
// 4. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// this example we do 'ref_levels' of uniform refinement. We choose
|
||||
// 'ref_levels' to be the largest number that gives a final mesh with no
|
||||
// more than 10,000 elements.
|
||||
{
|
||||
int ref_levels =
|
||||
(int)floor(log(10000./mesh.GetNE())/log(2.)/dim);
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh pmesh(MPI_COMM_WORLD, mesh);
|
||||
mesh.Clear();
|
||||
{
|
||||
int par_ref_levels = 2;
|
||||
for (int l = 0; l < par_ref_levels; l++)
|
||||
{
|
||||
pmesh.UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 6a. Display attribute set names contained in the initial mesh
|
||||
AttributeSets &attr_sets = pmesh.attribute_sets;
|
||||
AttributeSets &bdr_attr_sets = pmesh.bdr_attribute_sets;
|
||||
if (Mpi::Root())
|
||||
{
|
||||
std::set<string> names = attr_sets.GetAttributeSetNames();
|
||||
cout << "Element Attribute Set Names: ";
|
||||
for (auto const &set_name : names)
|
||||
{
|
||||
cout << " \"" << set_name << "\"";
|
||||
}
|
||||
cout << endl;
|
||||
|
||||
std::set<string> bdr_names = bdr_attr_sets.GetAttributeSetNames();
|
||||
cout << "Boundary Attribute Set Names: ";
|
||||
for (auto const &bdr_set_name : bdr_names)
|
||||
{
|
||||
cout << " \"" << bdr_set_name << "\"";
|
||||
}
|
||||
cout << endl;
|
||||
}
|
||||
|
||||
// 6b. Define new regions based on existing attribute sets
|
||||
{
|
||||
Array<int> & Na = attr_sets.GetAttributeSet("N Even");
|
||||
Array<int> & Nb = attr_sets.GetAttributeSet("N Odd");
|
||||
Array<int> & Sa = attr_sets.GetAttributeSet("S Even");
|
||||
Array<int> & Sb = attr_sets.GetAttributeSet("S Odd");
|
||||
Array<int> & Ea = attr_sets.GetAttributeSet("E Even");
|
||||
Array<int> & Eb = attr_sets.GetAttributeSet("E Odd");
|
||||
Array<int> & Wa = attr_sets.GetAttributeSet("W Even");
|
||||
Array<int> & Wb = attr_sets.GetAttributeSet("W Odd");
|
||||
|
||||
// Create a new set spanning the North point
|
||||
attr_sets.SetAttributeSet("North", Na);
|
||||
attr_sets.AddToAttributeSet("North", Nb);
|
||||
|
||||
// Create a new set spanning the South point
|
||||
attr_sets.SetAttributeSet("South", Sa);
|
||||
attr_sets.AddToAttributeSet("South", Sb);
|
||||
|
||||
// Create a new set spanning the East point
|
||||
attr_sets.SetAttributeSet("East", Ea);
|
||||
attr_sets.AddToAttributeSet("East", Eb);
|
||||
|
||||
// Create a new set spanning the West point
|
||||
attr_sets.SetAttributeSet("West", Wa);
|
||||
attr_sets.AddToAttributeSet("West", Wb);
|
||||
|
||||
// Create a new set consisting of the "a" sides of the compass rose
|
||||
attr_sets.SetAttributeSet("Rose Even", Na);
|
||||
attr_sets.AddToAttributeSet("Rose Even", Sa);
|
||||
attr_sets.AddToAttributeSet("Rose Even", Ea);
|
||||
attr_sets.AddToAttributeSet("Rose Even", Wa);
|
||||
|
||||
// Create a new set consisting of the "b" sides of the compass rose
|
||||
attr_sets.SetAttributeSet("Rose Odd", Nb);
|
||||
attr_sets.AddToAttributeSet("Rose Odd", Sb);
|
||||
attr_sets.AddToAttributeSet("Rose Odd", Eb);
|
||||
attr_sets.AddToAttributeSet("Rose Odd", Wb);
|
||||
|
||||
|
||||
// Create a new set consisting of the full compass rose
|
||||
Array<int> & Ra = attr_sets.GetAttributeSet("Rose Even");
|
||||
Array<int> & Rb = attr_sets.GetAttributeSet("Rose Odd");
|
||||
attr_sets.SetAttributeSet("Rose", Ra);
|
||||
attr_sets.AddToAttributeSet("Rose", Rb);
|
||||
}
|
||||
// 6c. Define new boundary regions based on existing boundary attribute sets
|
||||
{
|
||||
Array<int> & NNE = bdr_attr_sets.GetAttributeSet("NNE");
|
||||
Array<int> & NNW = bdr_attr_sets.GetAttributeSet("NNW");
|
||||
Array<int> & ENE = bdr_attr_sets.GetAttributeSet("ENE");
|
||||
Array<int> & ESE = bdr_attr_sets.GetAttributeSet("ESE");
|
||||
Array<int> & SSE = bdr_attr_sets.GetAttributeSet("SSE");
|
||||
Array<int> & SSW = bdr_attr_sets.GetAttributeSet("SSW");
|
||||
Array<int> & WNW = bdr_attr_sets.GetAttributeSet("WNW");
|
||||
Array<int> & WSW = bdr_attr_sets.GetAttributeSet("WSW");
|
||||
|
||||
bdr_attr_sets.SetAttributeSet("Northern Boundary", NNE);
|
||||
bdr_attr_sets.AddToAttributeSet("Northern Boundary", NNW);
|
||||
|
||||
bdr_attr_sets.SetAttributeSet("Southern Boundary", SSE);
|
||||
bdr_attr_sets.AddToAttributeSet("Southern Boundary", SSW);
|
||||
|
||||
bdr_attr_sets.SetAttributeSet("Eastern Boundary", ENE);
|
||||
bdr_attr_sets.AddToAttributeSet("Eastern Boundary", ESE);
|
||||
|
||||
bdr_attr_sets.SetAttributeSet("Western Boundary", WNW);
|
||||
bdr_attr_sets.AddToAttributeSet("Western Boundary", WSW);
|
||||
|
||||
bdr_attr_sets.SetAttributeSet("Boundary",
|
||||
bdr_attr_sets.GetAttributeSet
|
||||
("Northern Boundary"));
|
||||
bdr_attr_sets.AddToAttributeSet("Boundary",
|
||||
bdr_attr_sets.GetAttributeSet
|
||||
("Southern Boundary"));
|
||||
bdr_attr_sets.AddToAttributeSet("Boundary",
|
||||
bdr_attr_sets.GetAttributeSet
|
||||
("Eastern Boundary"));
|
||||
bdr_attr_sets.AddToAttributeSet("Boundary",
|
||||
bdr_attr_sets.GetAttributeSet
|
||||
("Western Boundary"));
|
||||
}
|
||||
|
||||
// 7. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use continuous Lagrange finite elements of the specified order. If
|
||||
// order < 1, we instead use an isoparametric/isogeometric space.
|
||||
H1_FECollection fec(order, dim);
|
||||
ParFiniteElementSpace fespace(&pmesh, &fec);
|
||||
HYPRE_BigInt size = fespace.GlobalTrueVSize();
|
||||
if (Mpi::Root())
|
||||
{
|
||||
cout << "Number of finite element unknowns: " << size << endl;
|
||||
}
|
||||
|
||||
// 8. Determine the list of true (i.e. parallel conforming) essential
|
||||
// boundary dofs. In this example, the boundary conditions are defined
|
||||
// by marking all the boundary regions corresponding to the boundary
|
||||
// attributes contained in the set named "ess_name" as essential
|
||||
// (Dirichlet) and converting them to a list of true dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
if (bdr_attr_sets.AttributeSetExists(ess_name))
|
||||
{
|
||||
Array<int> ess_bdr_marker = bdr_attr_sets.GetAttributeSetMarker(ess_name);
|
||||
fespace.GetEssentialTrueDofs(ess_bdr_marker, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 9. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system, which in this case is
|
||||
// (1_s,phi_i) where phi_i are the basis functions in fespace and 1_s
|
||||
// is an indicator function equal to 1 on the region defined by the
|
||||
// named set "source_name" and zero elsewhere.
|
||||
Array<int> source_marker = attr_sets.GetAttributeSetMarker(source_name);
|
||||
|
||||
ParLinearForm b(&fespace);
|
||||
ConstantCoefficient one(1.0);
|
||||
b.AddDomainIntegrator(new DomainLFIntegrator(one), source_marker);
|
||||
b.Assemble();
|
||||
|
||||
// 10. Define the solution vector x as a parallel finite element grid
|
||||
// function corresponding to fespace. Initialize x with initial guess of
|
||||
// zero, which satisfies the boundary conditions.
|
||||
ParGridFunction x(&fespace);
|
||||
x = 0.0;
|
||||
|
||||
// 11. Set up the parallel bilinear form a(.,.) on the finite element space
|
||||
// corresponding to the Laplacian operator -Delta, by adding the
|
||||
// Diffusion domain integrator.
|
||||
ParBilinearForm a(&fespace);
|
||||
|
||||
ConstantCoefficient defaultCoef(1.0e-6);
|
||||
ConstantCoefficient baseCoef(1.0);
|
||||
ConstantCoefficient roseCoef(2.0);
|
||||
|
||||
Array<int> base_marker = attr_sets.GetAttributeSetMarker("Base");
|
||||
Array<int> rose_marker = attr_sets.GetAttributeSetMarker("Rose Even");
|
||||
|
||||
// Impose a very small diffusion coefficient across the entire mesh
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(defaultCoef));
|
||||
|
||||
// Impose an additional, stronger diffusion coefficient in select regions
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(baseCoef), base_marker);
|
||||
a.AddDomainIntegrator(new DiffusionIntegrator(roseCoef), rose_marker);
|
||||
|
||||
// 12. Assemble the parallel bilinear form and the corresponding linear
|
||||
// system, applying any necessary transformations.
|
||||
a.Assemble();
|
||||
|
||||
HypreParMatrix A;
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
|
||||
|
||||
// 13. Solve the system using PCG with hypre's BoomerAMG preconditioner.
|
||||
HypreBoomerAMG M(A);
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(2000);
|
||||
cg.SetPrintLevel(1);
|
||||
cg.SetPreconditioner(M);
|
||||
cg.SetOperator(A);
|
||||
cg.Mult(B, X);
|
||||
|
||||
// 14. Recover the parallel grid function corresponding to X. This is the
|
||||
// local finite element solution on each processor.
|
||||
a.RecoverFEMSolution(X, b, x);
|
||||
|
||||
// 15. Save the refined mesh and the solution in parallel. This output can
|
||||
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
|
||||
pmesh.Save("mesh");
|
||||
x.Save("sol");
|
||||
|
||||
// 16. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
int num_procs = Mpi::WorldSize();
|
||||
int myid = Mpi::WorldRank();
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << pmesh << x << "keys Rjmm" << flush;
|
||||
}
|
||||
|
||||
return 0;
|
||||
}
|
||||
+2
-2
@@ -55,7 +55,7 @@ using namespace mfem;
|
||||
// Exact solution, E, and r.h.s., f. See below for implementation.
|
||||
void E_exact(const Vector &, Vector &);
|
||||
void f_exact(const Vector &, Vector &);
|
||||
double freq = 1.0, kappa;
|
||||
real_t freq = 1.0, kappa;
|
||||
int dim;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
@@ -263,7 +263,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 15. Compute and print the L^2 norm of the error.
|
||||
{
|
||||
double error = x.ComputeL2Error(E);
|
||||
real_t error = x.ComputeL2Error(E);
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "\n|| E_h - E ||_{L^2} = " << error << '\n' << endl;
|
||||
|
||||
+8
-8
@@ -54,7 +54,7 @@ using namespace mfem;
|
||||
// Exact solution, F, and r.h.s., f. See below for implementation.
|
||||
void F_exact(const Vector &, Vector &);
|
||||
void f_exact(const Vector &, Vector &);
|
||||
double freq = 1.0, kappa;
|
||||
real_t freq = 1.0, kappa;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -269,9 +269,9 @@ void F_exact(const Vector &p, Vector &F)
|
||||
{
|
||||
int dim = p.Size();
|
||||
|
||||
double x = p(0);
|
||||
double y = p(1);
|
||||
// double z = (dim == 3) ? p(2) : 0.0; // Uncomment if F is changed to depend on z
|
||||
real_t x = p(0);
|
||||
real_t y = p(1);
|
||||
// real_t z = (dim == 3) ? p(2) : 0.0; // Uncomment if F is changed to depend on z
|
||||
|
||||
F(0) = cos(kappa*x)*sin(kappa*y);
|
||||
F(1) = cos(kappa*y)*sin(kappa*x);
|
||||
@@ -286,11 +286,11 @@ void f_exact(const Vector &p, Vector &f)
|
||||
{
|
||||
int dim = p.Size();
|
||||
|
||||
double x = p(0);
|
||||
double y = p(1);
|
||||
// double z = (dim == 3) ? p(2) : 0.0; // Uncomment if f is changed to depend on z
|
||||
real_t x = p(0);
|
||||
real_t y = p(1);
|
||||
// real_t z = (dim == 3) ? p(2) : 0.0; // Uncomment if f is changed to depend on z
|
||||
|
||||
double temp = 1 + 2*kappa*kappa;
|
||||
real_t temp = 1 + 2*kappa*kappa;
|
||||
|
||||
f(0) = temp*cos(kappa*x)*sin(kappa*y);
|
||||
f(1) = temp*cos(kappa*y)*sin(kappa*x);
|
||||
|
||||
@@ -0,0 +1,374 @@
|
||||
// MFEM Example 40
|
||||
//
|
||||
// Compile with: make ex40
|
||||
//
|
||||
// Sample runs: ex40 -step 10 -gr 2.0
|
||||
// ex40 -step 10 -gr 2.0 -o 3 -r 1
|
||||
// ex40 -step 10 -gr 2.0 -r 4 -m ../data/l-shape.mesh
|
||||
// ex40 -step 10 -gr 2.0 -r 2 -m ../data/fichera.mesh
|
||||
//
|
||||
// Description: This example code demonstrates how to use MFEM to solve the
|
||||
// eikonal equation,
|
||||
//
|
||||
// |∇𝑢| = 1 in Ω, 𝑢 = g on ∂Ω.
|
||||
//
|
||||
// The solution of this problem coincides with the unique optimum of
|
||||
// the nonlinear program
|
||||
//
|
||||
// maximize ∫_Ω 𝑢 d𝑥 subject to |∇𝑢| ≤ 1, 𝑢 = g on Ω, (⋆)
|
||||
//
|
||||
// which is the foundation for method implemented below.
|
||||
//
|
||||
// Following the proximal Galerkin methodology [1] (see also Example
|
||||
// 36), we construct a Legendre function for the unit ball
|
||||
// 𝐵₁ := {𝑥 ∈ Rⁿ | |𝑥| < 1}. Our choice is the Hellinger entropy,
|
||||
//
|
||||
// h(𝑥) = −( 1 − |𝑥|² )^{1/2},
|
||||
//
|
||||
// although other choices are possible, each leading to a slightly
|
||||
// different algorithm. We then adaptively regularize the optimization
|
||||
// problem (⋆) with the Bregman divergence of the Hellinger entropy,
|
||||
//
|
||||
// maximize ∫_Ω 𝑢 d𝑥 - αₖ⁻¹ Dₕ(∇𝑢,∇𝑢ₖ₋₁) subject to 𝑢 = g on Ω.
|
||||
//
|
||||
// This results in a sequence of functions ( 𝜓ₖ , 𝑢ₖ ),
|
||||
//
|
||||
// 𝑢ₖ → 𝑢, 𝜓ₖ/|𝜓ₖ| → ∇𝑢 as k → \infty,
|
||||
//
|
||||
// defined by the nonlinear saddle-point problems
|
||||
//
|
||||
// Find 𝜓ₖ ∈ H(div,Ω) and 𝑢ₖ ∈ L²(Ω) such that
|
||||
// ( Zₖ(𝜓ₖ) , τ ) + ( 𝑢ₖ , ∇⋅τ ) = ⟨ g , τ⋅n ⟩ ∀ τ ∈ H(div,Ω)
|
||||
// ( ∇⋅𝜓ₖ , v ) = ( ∇⋅𝜓ₖ₋₁ - 1 , v ) ∀ v ∈ L²(Ω)
|
||||
//
|
||||
// where Zₖ(𝜓) := ∇h⁻¹(αₖ 𝜓) = 𝜓 / ( αₖ⁻² + |𝜓|² )^{1/2} and step size
|
||||
// αₖ > 0. These saddle-point problems are solved using a damped Newton's
|
||||
// method. This example assumes that g = 0 and allows the step size to
|
||||
// grow geometrically, αₖ = α₀rᵏ, where r ≥ 1 is the growth rate.
|
||||
//
|
||||
// [1] Keith, B. and Surowiec, T. (2023) Proximal Galerkin: A structure-
|
||||
// preserving finite element method for pointwise bound constraints.
|
||||
// arXiv:2307.12444 [math.NA]
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
class ZCoefficient : public VectorCoefficient
|
||||
{
|
||||
protected:
|
||||
GridFunction *psi;
|
||||
real_t alpha;
|
||||
|
||||
public:
|
||||
ZCoefficient(int vdim, GridFunction &psi_, real_t alpha_ = 1.0)
|
||||
: VectorCoefficient(vdim), psi(&psi_), alpha(alpha_) { }
|
||||
|
||||
virtual void Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
void SetAlpha(real_t alpha_) { alpha = alpha_; }
|
||||
};
|
||||
|
||||
class DZCoefficient : public MatrixCoefficient
|
||||
{
|
||||
protected:
|
||||
GridFunction *psi;
|
||||
real_t alpha;
|
||||
|
||||
public:
|
||||
DZCoefficient(int height, GridFunction &psi_, real_t alpha_ = 1.0)
|
||||
: MatrixCoefficient(height), psi(&psi_), alpha(alpha_) { }
|
||||
|
||||
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
void SetAlpha(real_t alpha_) { alpha = alpha_; }
|
||||
};
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command-line options.
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
int max_it = 5;
|
||||
int ref_levels = 3;
|
||||
real_t alpha = 1.0;
|
||||
real_t growth_rate = 1.0;
|
||||
real_t newton_scaling = 0.9;
|
||||
real_t tichonov = 1e-1;
|
||||
real_t tol = 1e-4;
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&ref_levels, "-r", "--refs",
|
||||
"Number of h-refinements.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
"Maximum number of iterations");
|
||||
args.AddOption(&tol, "-tol", "--tol",
|
||||
"Stopping criteria based on the difference between"
|
||||
"successive solution updates");
|
||||
args.AddOption(&alpha, "-step", "--step",
|
||||
"Initial size alpha");
|
||||
args.AddOption(&growth_rate, "-gr", "--growth-rate",
|
||||
"Growth rate of the step size alpha");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// 2. Read the mesh from the mesh file.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
int sdim = mesh.SpaceDimension();
|
||||
|
||||
MFEM_ASSERT(mesh.bdr_attributes.Size(),
|
||||
"This example does not currently support meshes"
|
||||
" without boundary attributes."
|
||||
)
|
||||
|
||||
// 3. Postprocess the mesh.
|
||||
// 3A. Refine the mesh to increase the resolution.
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 3B. Interpolate the geometry after refinement to control geometry error.
|
||||
// NOTE: Minimum second-order interpolation is used to improve the accuracy.
|
||||
int curvature_order = max(order,2);
|
||||
mesh.SetCurvature(curvature_order);
|
||||
|
||||
// 4. Define the necessary finite element spaces on the mesh.
|
||||
RT_FECollection RTfec(order, dim);
|
||||
FiniteElementSpace RTfes(&mesh, &RTfec);
|
||||
|
||||
L2_FECollection L2fec(order, dim);
|
||||
FiniteElementSpace L2fes(&mesh, &L2fec);
|
||||
|
||||
cout << "Number of H(div) dofs: "
|
||||
<< RTfes.GetTrueVSize() << endl;
|
||||
cout << "Number of L² dofs: "
|
||||
<< L2fes.GetTrueVSize() << endl;
|
||||
|
||||
// 5. Define the offsets for the block matrices
|
||||
Array<int> offsets(3);
|
||||
offsets[0] = 0;
|
||||
offsets[1] = RTfes.GetVSize();
|
||||
offsets[2] = L2fes.GetVSize();
|
||||
offsets.PartialSum();
|
||||
|
||||
BlockVector x(offsets), rhs(offsets);
|
||||
x = 0.0; rhs = 0.0;
|
||||
|
||||
// 6. Define the solution vectors as a finite element grid functions
|
||||
// corresponding to the fespaces.
|
||||
GridFunction u_gf, delta_psi_gf;
|
||||
delta_psi_gf.MakeRef(&RTfes,x,offsets[0]);
|
||||
u_gf.MakeRef(&L2fes,x,offsets[1]);
|
||||
|
||||
GridFunction psi_old_gf(&RTfes);
|
||||
GridFunction psi_gf(&RTfes);
|
||||
GridFunction u_old_gf(&L2fes);
|
||||
|
||||
// 7. Define initial guesses for the solution variables.
|
||||
delta_psi_gf = 0.0;
|
||||
psi_gf = 0.0;
|
||||
u_gf = 0.0;
|
||||
psi_old_gf = psi_gf;
|
||||
u_old_gf = u_gf;
|
||||
|
||||
// 8. Prepare for glvis output.
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock;
|
||||
if (visualization)
|
||||
{
|
||||
sol_sock.open(vishost,visport);
|
||||
sol_sock.precision(8);
|
||||
}
|
||||
|
||||
// 9. Coefficients to be used later.
|
||||
ConstantCoefficient neg_one(-1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
ConstantCoefficient tichonov_cf(tichonov);
|
||||
ConstantCoefficient neg_tichonov_cf(-1.0*tichonov);
|
||||
ZCoefficient Z(sdim, psi_gf, alpha);
|
||||
DZCoefficient DZ(sdim, psi_gf, alpha);
|
||||
ScalarVectorProductCoefficient neg_Z(-1.0, Z);
|
||||
DivergenceGridFunctionCoefficient div_psi_cf(&psi_gf);
|
||||
DivergenceGridFunctionCoefficient div_psi_old_cf(&psi_old_gf);
|
||||
SumCoefficient psi_old_minus_psi(div_psi_old_cf, div_psi_cf, 1.0, -1.0);
|
||||
|
||||
// 10. Assemble constant matrices/vectors to avoid reassembly in the loop.
|
||||
LinearForm b0, b1;
|
||||
b0.MakeRef(&RTfes,rhs.GetBlock(0),0);
|
||||
b1.MakeRef(&L2fes,rhs.GetBlock(1),0);
|
||||
|
||||
b0.AddDomainIntegrator(new VectorFEDomainLFIntegrator(neg_Z));
|
||||
b1.AddDomainIntegrator(new DomainLFIntegrator(neg_one));
|
||||
b1.AddDomainIntegrator(new DomainLFIntegrator(psi_old_minus_psi));
|
||||
|
||||
BilinearForm a00(&RTfes);
|
||||
a00.AddDomainIntegrator(new VectorFEMassIntegrator(DZ));
|
||||
a00.AddDomainIntegrator(new VectorFEMassIntegrator(tichonov_cf));
|
||||
|
||||
MixedBilinearForm a10(&RTfes,&L2fes);
|
||||
a10.AddDomainIntegrator(new VectorFEDivergenceIntegrator());
|
||||
a10.Assemble();
|
||||
a10.Finalize();
|
||||
SparseMatrix &A10 = a10.SpMat();
|
||||
SparseMatrix *A01 = Transpose(A10);
|
||||
|
||||
BilinearForm a11(&L2fes);
|
||||
a11.AddDomainIntegrator(new MassIntegrator(neg_tichonov_cf));
|
||||
a11.Assemble();
|
||||
a11.Finalize();
|
||||
SparseMatrix &A11 = a11.SpMat();
|
||||
|
||||
// 11. Iterate.
|
||||
int k;
|
||||
int total_iterations = 0;
|
||||
real_t increment_u = 0.1;
|
||||
GridFunction u_tmp(&L2fes);
|
||||
for (k = 0; k < max_it; k++)
|
||||
{
|
||||
u_tmp = u_old_gf;
|
||||
Z.SetAlpha(alpha);
|
||||
DZ.SetAlpha(alpha);
|
||||
|
||||
mfem::out << "\nOUTER ITERATION " << k+1 << endl;
|
||||
|
||||
int j;
|
||||
for ( j = 0; j < 5; j++)
|
||||
{
|
||||
total_iterations++;
|
||||
|
||||
b0.Assemble();
|
||||
b1.Assemble();
|
||||
|
||||
a00.Assemble(false);
|
||||
a00.Finalize(false);
|
||||
SparseMatrix &A00 = a00.SpMat();
|
||||
|
||||
// Construct Schur-complement preconditioner
|
||||
Vector A00_diag(a00.Height());
|
||||
A00.GetDiag(A00_diag);
|
||||
A00_diag.Reciprocal();
|
||||
SparseMatrix *S = Mult_AtDA(*A01, A00_diag);
|
||||
|
||||
BlockDiagonalPreconditioner prec(offsets);
|
||||
prec.SetDiagonalBlock(0,new DSmoother(A00));
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
prec.SetDiagonalBlock(1,new GSSmoother(*S));
|
||||
#else
|
||||
prec.SetDiagonalBlock(1,new UMFPackSolver(*S));
|
||||
#endif
|
||||
prec.owns_blocks = 1;
|
||||
|
||||
BlockOperator A(offsets);
|
||||
A.SetBlock(0,0,&A00);
|
||||
A.SetBlock(1,0,&A10);
|
||||
A.SetBlock(0,1,A01);
|
||||
A.SetBlock(1,1,&A11);
|
||||
|
||||
GMRES(A,prec,rhs,x,0,2000,500,1e-12,0.0);
|
||||
delete S;
|
||||
|
||||
u_tmp -= u_gf;
|
||||
real_t Newton_update_size = u_tmp.ComputeL2Error(zero);
|
||||
u_tmp = u_gf;
|
||||
|
||||
// Damped Newton update
|
||||
psi_gf.Add(newton_scaling, delta_psi_gf);
|
||||
a00.Update();
|
||||
|
||||
if (visualization)
|
||||
{
|
||||
sol_sock << "solution\n" << mesh << u_gf << "window_title 'Discrete solution'"
|
||||
<< flush;
|
||||
}
|
||||
|
||||
mfem::out << "Newton_update_size = " << Newton_update_size << endl;
|
||||
|
||||
if (Newton_update_size < increment_u)
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
u_tmp = u_gf;
|
||||
u_tmp -= u_old_gf;
|
||||
increment_u = u_tmp.ComputeL2Error(zero);
|
||||
|
||||
mfem::out << "Number of Newton iterations = " << j+1 << endl;
|
||||
mfem::out << "Increment (|| uₕ - uₕ_prvs||) = " << increment_u << endl;
|
||||
|
||||
u_old_gf = u_gf;
|
||||
psi_old_gf = psi_gf;
|
||||
|
||||
if (increment_u < tol || k == max_it-1)
|
||||
{
|
||||
break;
|
||||
}
|
||||
|
||||
alpha *= max(growth_rate, 1_r);
|
||||
|
||||
}
|
||||
|
||||
mfem::out << "\n Outer iterations: " << k+1
|
||||
<< "\n Total iterations: " << total_iterations
|
||||
<< "\n Total dofs: " << RTfes.GetTrueVSize() + L2fes.GetTrueVSize()
|
||||
<< endl;
|
||||
|
||||
delete A01;
|
||||
return 0;
|
||||
}
|
||||
|
||||
void ZCoefficient::Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(psi != NULL, "grid function is not set");
|
||||
MFEM_ASSERT(alpha > 0, "alpha is not positive");
|
||||
|
||||
Vector psi_vals(vdim);
|
||||
psi->GetVectorValue(T, ip, psi_vals);
|
||||
real_t norm = psi_vals.Norml2();
|
||||
real_t phi = 1.0 / sqrt(1.0/(alpha*alpha) + norm*norm);
|
||||
|
||||
V = psi_vals;
|
||||
V *= phi;
|
||||
}
|
||||
|
||||
void DZCoefficient::Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(psi != NULL, "grid function is not set");
|
||||
MFEM_ASSERT(alpha > 0, "alpha is not positive");
|
||||
|
||||
Vector psi_vals(height);
|
||||
psi->GetVectorValue(T, ip, psi_vals);
|
||||
real_t norm = psi_vals.Norml2();
|
||||
real_t phi = 1.0 / sqrt(1.0/(alpha*alpha) + norm*norm);
|
||||
|
||||
K = 0.0;
|
||||
for (int i = 0; i < height; i++)
|
||||
{
|
||||
K(i,i) = phi;
|
||||
for (int j = 0; j < height; j++)
|
||||
{
|
||||
K(i,j) -= psi_vals(i) * psi_vals(j) * pow(phi, 3);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,436 @@
|
||||
// MFEM Example 40 - Parallel Version
|
||||
//
|
||||
// Compile with: make ex40p
|
||||
//
|
||||
// Sample runs: mpirun -np 4 ex40p -step 10 -gr 2.0
|
||||
// mpirun -np 4 ex40p -step 10 -gr 2.0 -o 3 -r 1
|
||||
// mpirun -np 4 ex40p -step 10 -gr 2.0 -r 4 -m ../data/l-shape.mesh
|
||||
// mpirun -np 4 ex40p -step 10 -gr 2.0 -r 2 -m ../data/fichera.mesh
|
||||
//
|
||||
// Description: This example code demonstrates how to use MFEM to solve the
|
||||
// eikonal equation,
|
||||
//
|
||||
// |∇𝑢| = 1 in Ω, 𝑢 = g on ∂Ω.
|
||||
//
|
||||
// The solution of this problem coincides with the unique optimum of
|
||||
// the nonlinear program
|
||||
//
|
||||
// maximize ∫_Ω 𝑢 d𝑥 subject to |∇𝑢| ≤ 1, 𝑢 = g on Ω, (⋆)
|
||||
//
|
||||
// which is the foundation for method implemented below.
|
||||
//
|
||||
// Following the proximal Galerkin methodology [1] (see also Example
|
||||
// 36), we construct a Legendre function for the unit ball
|
||||
// 𝐵₁ := {𝑥 ∈ Rⁿ | |𝑥| < 1}. Our choice is the Hellinger entropy,
|
||||
//
|
||||
// h(𝑥) = −( 1 − |𝑥|² )^{1/2},
|
||||
//
|
||||
// although other choices are possible, each leading to a slightly
|
||||
// different algorithm. We then adaptively regularize the optimization
|
||||
// problem (⋆) with the Bregman divergence of the Hellinger entropy,
|
||||
//
|
||||
// maximize ∫_Ω 𝑢 d𝑥 - αₖ⁻¹ Dₕ(∇𝑢,∇𝑢ₖ₋₁) subject to 𝑢 = g on Ω.
|
||||
//
|
||||
// This results in a sequence of functions ( 𝜓ₖ , 𝑢ₖ ),
|
||||
//
|
||||
// 𝑢ₖ → 𝑢, 𝜓ₖ/|𝜓ₖ| → ∇𝑢 as k → \infty,
|
||||
//
|
||||
// defined by the nonlinear saddle-point problems
|
||||
//
|
||||
// Find 𝜓ₖ ∈ H(div,Ω) and 𝑢ₖ ∈ L²(Ω) such that
|
||||
// ( Zₖ(𝜓ₖ) , τ ) + ( 𝑢ₖ , ∇⋅τ ) = ⟨ g , τ⋅n ⟩ ∀ τ ∈ H(div,Ω)
|
||||
// ( ∇⋅𝜓ₖ , v ) = ( ∇⋅𝜓ₖ₋₁ - 1 , v ) ∀ v ∈ L²(Ω)
|
||||
//
|
||||
// where Zₖ(𝜓) := ∇h⁻¹(αₖ 𝜓) = 𝜓 / ( αₖ⁻² + |𝜓|² )^{1/2} and step size
|
||||
// αₖ > 0. These saddle-point problems are solved using a damped Newton's
|
||||
// method. This example assumes that g = 0 and allows the step size to
|
||||
// grow geometrically, αₖ = α₀rᵏ, where r ≥ 1 is the growth rate.
|
||||
//
|
||||
// [1] Keith, B. and Surowiec, T. (2023) Proximal Galerkin: A structure-
|
||||
// preserving finite element method for pointwise bound constraints.
|
||||
// arXiv:2307.12444 [math.NA]
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
class ZCoefficient : public VectorCoefficient
|
||||
{
|
||||
protected:
|
||||
ParGridFunction *psi;
|
||||
real_t alpha;
|
||||
|
||||
public:
|
||||
ZCoefficient(int vdim, ParGridFunction &psi_, real_t alpha_ = 1.0)
|
||||
: VectorCoefficient(vdim), psi(&psi_), alpha(alpha_) { }
|
||||
|
||||
virtual void Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
void SetAlpha(real_t alpha_) { alpha = alpha_; }
|
||||
};
|
||||
|
||||
class DZCoefficient : public MatrixCoefficient
|
||||
{
|
||||
protected:
|
||||
ParGridFunction *psi;
|
||||
real_t alpha;
|
||||
|
||||
public:
|
||||
DZCoefficient(int height, ParGridFunction &psi_, real_t alpha_ = 1.0)
|
||||
: MatrixCoefficient(height), psi(&psi_), alpha(alpha_) { }
|
||||
|
||||
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
void SetAlpha(real_t alpha_) { alpha = alpha_; }
|
||||
};
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 0. Initialize MPI and HYPRE.
|
||||
Mpi::Init();
|
||||
int num_procs = Mpi::WorldSize();
|
||||
int myid = Mpi::WorldRank();
|
||||
Hypre::Init();
|
||||
|
||||
// 1. Parse command-line options.
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
int max_it = 5;
|
||||
int ref_levels = 3;
|
||||
real_t alpha = 1.0;
|
||||
real_t growth_rate = 1.0;
|
||||
real_t newton_scaling = 0.9;
|
||||
real_t tichonov = 1e-1;
|
||||
real_t tol = 1e-4;
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&ref_levels, "-r", "--refs",
|
||||
"Number of h-refinements.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
"Maximum number of iterations");
|
||||
args.AddOption(&tol, "-tol", "--tol",
|
||||
"Stopping criteria based on the difference between"
|
||||
"successive solution updates");
|
||||
args.AddOption(&alpha, "-step", "--step",
|
||||
"Initial size alpha");
|
||||
args.AddOption(&growth_rate, "-gr", "--growth-rate",
|
||||
"Growth rate of the step size alpha");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
}
|
||||
return 1;
|
||||
}
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
// 2. Read the mesh from the mesh file.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
int sdim = mesh.SpaceDimension();
|
||||
|
||||
MFEM_ASSERT(mesh.bdr_attributes.Size(),
|
||||
"This example does not currently support meshes"
|
||||
" without boundary attributes."
|
||||
)
|
||||
|
||||
// 3. Postprocess the mesh.
|
||||
// 3A. Refine the mesh to increase the resolution.
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
|
||||
// 3B. Interpolate the geometry after refinement to control geometry error.
|
||||
// NOTE: Minimum second-order interpolation is used to improve the accuracy.
|
||||
int curvature_order = max(order,2);
|
||||
mesh.SetCurvature(curvature_order);
|
||||
|
||||
ParMesh pmesh(MPI_COMM_WORLD, mesh);
|
||||
mesh.Clear();
|
||||
|
||||
// 4. Define the necessary finite element spaces on the mesh.
|
||||
RT_FECollection RTfec(order, dim);
|
||||
ParFiniteElementSpace RTfes(&pmesh, &RTfec);
|
||||
|
||||
L2_FECollection L2fec(order, dim);
|
||||
ParFiniteElementSpace L2fes(&pmesh, &L2fec);
|
||||
|
||||
int num_dofs_RT = RTfes.GlobalTrueVSize();
|
||||
int num_dofs_L2 = L2fes.GlobalTrueVSize();
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Number of H(div) dofs: "
|
||||
<< num_dofs_RT << endl;
|
||||
cout << "Number of L² dofs: "
|
||||
<< num_dofs_L2 << endl;
|
||||
}
|
||||
|
||||
// 5. Define the offsets for the block matrices
|
||||
Array<int> offsets(3);
|
||||
offsets[0] = 0;
|
||||
offsets[1] = RTfes.GetVSize();
|
||||
offsets[2] = L2fes.GetVSize();
|
||||
offsets.PartialSum();
|
||||
|
||||
Array<int> toffsets(3);
|
||||
toffsets[0] = 0;
|
||||
toffsets[1] = RTfes.GetTrueVSize();
|
||||
toffsets[2] = L2fes.GetTrueVSize();
|
||||
toffsets.PartialSum();
|
||||
|
||||
BlockVector x(offsets), rhs(offsets);
|
||||
x = 0.0; rhs = 0.0;
|
||||
|
||||
BlockVector tx(toffsets), trhs(toffsets);
|
||||
tx = 0.0; trhs = 0.0;
|
||||
|
||||
// 6. Define the solution vectors as a finite element grid functions
|
||||
// corresponding to the fespaces.
|
||||
ParGridFunction u_gf, delta_psi_gf;
|
||||
delta_psi_gf.MakeRef(&RTfes,x,offsets[0]);
|
||||
u_gf.MakeRef(&L2fes,x,offsets[1]);
|
||||
|
||||
ParGridFunction psi_old_gf(&RTfes);
|
||||
ParGridFunction psi_gf(&RTfes);
|
||||
ParGridFunction u_old_gf(&L2fes);
|
||||
|
||||
// 7. Define initial guesses for the solution variables.
|
||||
delta_psi_gf = 0.0;
|
||||
psi_gf = 0.0;
|
||||
u_gf = 0.0;
|
||||
psi_old_gf = psi_gf;
|
||||
u_old_gf = u_gf;
|
||||
|
||||
// 8. Prepare for glvis output.
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock;
|
||||
if (visualization)
|
||||
{
|
||||
sol_sock.open(vishost,visport);
|
||||
sol_sock.precision(8);
|
||||
}
|
||||
|
||||
// 9. Coefficients to be used later.
|
||||
ConstantCoefficient neg_one(-1.0);
|
||||
ConstantCoefficient zero(0.0);
|
||||
ConstantCoefficient tichonov_cf(tichonov);
|
||||
ConstantCoefficient neg_tichonov_cf(-1.0*tichonov);
|
||||
ZCoefficient Z(sdim, psi_gf, alpha);
|
||||
DZCoefficient DZ(sdim, psi_gf, alpha);
|
||||
ScalarVectorProductCoefficient neg_Z(-1.0, Z);
|
||||
DivergenceGridFunctionCoefficient div_psi_cf(&psi_gf);
|
||||
DivergenceGridFunctionCoefficient div_psi_old_cf(&psi_old_gf);
|
||||
SumCoefficient psi_old_minus_psi(div_psi_old_cf, div_psi_cf, 1.0, -1.0);
|
||||
|
||||
// 10. Assemble constant matrices/vectors to avoid reassembly in the loop.
|
||||
ParLinearForm b0, b1;
|
||||
b0.MakeRef(&RTfes,rhs.GetBlock(0),0);
|
||||
b1.MakeRef(&L2fes,rhs.GetBlock(1),0);
|
||||
|
||||
b0.AddDomainIntegrator(new VectorFEDomainLFIntegrator(neg_Z));
|
||||
b1.AddDomainIntegrator(new DomainLFIntegrator(neg_one));
|
||||
b1.AddDomainIntegrator(new DomainLFIntegrator(psi_old_minus_psi));
|
||||
|
||||
ParBilinearForm a00(&RTfes);
|
||||
a00.AddDomainIntegrator(new VectorFEMassIntegrator(DZ));
|
||||
a00.AddDomainIntegrator(new VectorFEMassIntegrator(tichonov_cf));
|
||||
|
||||
ParMixedBilinearForm a10(&RTfes,&L2fes);
|
||||
a10.AddDomainIntegrator(new VectorFEDivergenceIntegrator());
|
||||
a10.Assemble();
|
||||
a10.Finalize();
|
||||
HypreParMatrix *A10 = a10.ParallelAssemble();
|
||||
|
||||
HypreParMatrix *A01 = A10->Transpose();
|
||||
|
||||
ParBilinearForm a11(&L2fes);
|
||||
a11.AddDomainIntegrator(new MassIntegrator(neg_tichonov_cf));
|
||||
a11.Assemble();
|
||||
a11.Finalize();
|
||||
HypreParMatrix *A11 = a11.ParallelAssemble();
|
||||
|
||||
// 11. Iterate.
|
||||
int k;
|
||||
int total_iterations = 0;
|
||||
real_t increment_u = 0.1;
|
||||
ParGridFunction u_tmp(&L2fes);
|
||||
for (k = 0; k < max_it; k++)
|
||||
{
|
||||
u_tmp = u_old_gf;
|
||||
Z.SetAlpha(alpha);
|
||||
DZ.SetAlpha(alpha);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "\nOUTER ITERATION " << k+1 << endl;
|
||||
}
|
||||
|
||||
int j;
|
||||
for ( j = 0; j < 5; j++)
|
||||
{
|
||||
total_iterations++;
|
||||
|
||||
b0.Assemble();
|
||||
b0.ParallelAssemble(trhs.GetBlock(0));
|
||||
|
||||
b1.Assemble();
|
||||
b1.ParallelAssemble(trhs.GetBlock(1));
|
||||
|
||||
a00.Assemble(false);
|
||||
a00.Finalize(false);
|
||||
HypreParMatrix *A00 = a00.ParallelAssemble();
|
||||
|
||||
// Construct Schur-complement preconditioner
|
||||
HypreParVector A00_diag(MPI_COMM_WORLD, A00->GetGlobalNumRows(),
|
||||
A00->GetRowStarts());
|
||||
A00->GetDiag(A00_diag);
|
||||
HypreParMatrix S_tmp(*A01);
|
||||
S_tmp.InvScaleRows(A00_diag);
|
||||
HypreParMatrix *S = ParMult(A10, &S_tmp, true);
|
||||
|
||||
BlockDiagonalPreconditioner prec(toffsets);
|
||||
HypreBoomerAMG P00(*A00);
|
||||
P00.SetPrintLevel(0);
|
||||
HypreBoomerAMG P11(*S);
|
||||
P11.SetPrintLevel(0);
|
||||
prec.SetDiagonalBlock(0,&P00);
|
||||
prec.SetDiagonalBlock(1,&P11);
|
||||
|
||||
BlockOperator A(toffsets);
|
||||
A.SetBlock(0,0,A00);
|
||||
A.SetBlock(1,0,A10);
|
||||
A.SetBlock(0,1,A01);
|
||||
A.SetBlock(1,1,A11);
|
||||
|
||||
GMRESSolver gmres(MPI_COMM_WORLD);
|
||||
gmres.SetPrintLevel(-1);
|
||||
gmres.SetRelTol(1e-8);
|
||||
gmres.SetMaxIter(2000);
|
||||
gmres.SetKDim(500);
|
||||
gmres.SetOperator(A);
|
||||
gmres.SetPreconditioner(prec);
|
||||
gmres.Mult(trhs,tx);
|
||||
delete S;
|
||||
delete A00;
|
||||
|
||||
delta_psi_gf.SetFromTrueDofs(tx.GetBlock(0));
|
||||
u_gf.SetFromTrueDofs(tx.GetBlock(1));
|
||||
|
||||
u_tmp -= u_gf;
|
||||
real_t Newton_update_size = u_tmp.ComputeL2Error(zero);
|
||||
u_tmp = u_gf;
|
||||
|
||||
// Damped Newton update
|
||||
psi_gf.Add(newton_scaling, delta_psi_gf);
|
||||
a00.Update();
|
||||
|
||||
if (visualization)
|
||||
{
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock << "solution\n" << pmesh << u_gf << "window_title 'Discrete solution'"
|
||||
<< flush;
|
||||
}
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "Newton_update_size = " << Newton_update_size << endl;
|
||||
}
|
||||
|
||||
if (Newton_update_size < increment_u)
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
u_tmp = u_gf;
|
||||
u_tmp -= u_old_gf;
|
||||
increment_u = u_tmp.ComputeL2Error(zero);
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "Number of Newton iterations = " << j+1 << endl;
|
||||
mfem::out << "Increment (|| uₕ - uₕ_prvs||) = " << increment_u << endl;
|
||||
}
|
||||
|
||||
u_old_gf = u_gf;
|
||||
psi_old_gf = psi_gf;
|
||||
|
||||
if (increment_u < tol || k == max_it-1)
|
||||
{
|
||||
break;
|
||||
}
|
||||
|
||||
alpha *= max(growth_rate, 1_r);
|
||||
|
||||
}
|
||||
|
||||
// 12. Print stats.
|
||||
if (myid == 0)
|
||||
{
|
||||
mfem::out << "\n Outer iterations: " << k+1
|
||||
<< "\n Total iterations: " << total_iterations
|
||||
<< "\n Total dofs: " << RTfes.GetTrueVSize() + L2fes.GetTrueVSize()
|
||||
<< endl;
|
||||
}
|
||||
|
||||
// 13. Free the used memory.
|
||||
delete A01;
|
||||
delete A10;
|
||||
delete A11;
|
||||
return 0;
|
||||
}
|
||||
|
||||
void ZCoefficient::Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(psi != NULL, "grid function is not set");
|
||||
MFEM_ASSERT(alpha > 0, "alpha is not positive");
|
||||
|
||||
Vector psi_vals(vdim);
|
||||
psi->GetVectorValue(T, ip, psi_vals);
|
||||
real_t norm = psi_vals.Norml2();
|
||||
real_t phi = 1.0 / sqrt(1.0/(alpha*alpha) + norm*norm);
|
||||
|
||||
V = psi_vals;
|
||||
V *= phi;
|
||||
}
|
||||
|
||||
void DZCoefficient::Eval(DenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
MFEM_ASSERT(psi != NULL, "grid function is not set");
|
||||
MFEM_ASSERT(alpha > 0, "alpha is not positive");
|
||||
|
||||
Vector psi_vals(height);
|
||||
psi->GetVectorValue(T, ip, psi_vals);
|
||||
real_t norm = psi_vals.Norml2();
|
||||
real_t phi = 1.0 / sqrt(1.0/(alpha*alpha) + norm*norm);
|
||||
|
||||
K = 0.0;
|
||||
for (int i = 0; i < height; i++)
|
||||
{
|
||||
K(i,i) = phi;
|
||||
for (int j = 0; j < height; j++)
|
||||
{
|
||||
K(i,j) -= psi_vals(i) * psi_vals(j) * pow(phi, 3);
|
||||
}
|
||||
}
|
||||
}
|
||||
+9
-9
@@ -54,7 +54,7 @@ using namespace mfem;
|
||||
// Exact solution, F, and r.h.s., f. See below for implementation.
|
||||
void F_exact(const Vector &, Vector &);
|
||||
void f_exact(const Vector &, Vector &);
|
||||
double freq = 1.0, kappa;
|
||||
real_t freq = 1.0, kappa;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -255,7 +255,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
// 15. Compute and print the L^2 norm of the error.
|
||||
{
|
||||
double error = x.ComputeL2Error(F);
|
||||
real_t error = x.ComputeL2Error(F);
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "\n|| F_h - F ||_{L^2} = " << error << '\n' << endl;
|
||||
@@ -311,9 +311,9 @@ void F_exact(const Vector &p, Vector &F)
|
||||
{
|
||||
int dim = p.Size();
|
||||
|
||||
double x = p(0);
|
||||
double y = p(1);
|
||||
// double z = (dim == 3) ? p(2) : 0.0; // Uncomment if F is changed to depend on z
|
||||
real_t x = p(0);
|
||||
real_t y = p(1);
|
||||
// real_t z = (dim == 3) ? p(2) : 0.0; // Uncomment if F is changed to depend on z
|
||||
|
||||
F(0) = cos(kappa*x)*sin(kappa*y);
|
||||
F(1) = cos(kappa*y)*sin(kappa*x);
|
||||
@@ -328,11 +328,11 @@ void f_exact(const Vector &p, Vector &f)
|
||||
{
|
||||
int dim = p.Size();
|
||||
|
||||
double x = p(0);
|
||||
double y = p(1);
|
||||
// double z = (dim == 3) ? p(2) : 0.0; // Uncomment if f is changed to depend on z
|
||||
real_t x = p(0);
|
||||
real_t y = p(1);
|
||||
// real_t z = (dim == 3) ? p(2) : 0.0; // Uncomment if f is changed to depend on z
|
||||
|
||||
double temp = 1 + 2*kappa*kappa;
|
||||
real_t temp = 1 + 2*kappa*kappa;
|
||||
|
||||
f(0) = temp*cos(kappa*x)*sin(kappa*y);
|
||||
f(1) = temp*cos(kappa*y)*sin(kappa*x);
|
||||
|
||||
+18
-18
@@ -45,10 +45,10 @@ using namespace mfem;
|
||||
|
||||
// Define the analytical solution and forcing terms / boundary conditions
|
||||
void uFun_ex(const Vector & x, Vector & u);
|
||||
double pFun_ex(const Vector & x);
|
||||
real_t pFun_ex(const Vector & x);
|
||||
void fFun(const Vector & x, Vector & f);
|
||||
double gFun(const Vector & x);
|
||||
double f_natural(const Vector & x);
|
||||
real_t gFun(const Vector & x);
|
||||
real_t f_natural(const Vector & x);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -270,8 +270,8 @@ int main(int argc, char *argv[])
|
||||
// 11. Solve the linear system with MINRES.
|
||||
// Check the norm of the unpreconditioned residual.
|
||||
int maxIter(1000);
|
||||
double rtol(1.e-6);
|
||||
double atol(1.e-10);
|
||||
real_t rtol(1.e-6);
|
||||
real_t atol(1.e-10);
|
||||
|
||||
chrono.Clear();
|
||||
chrono.Start();
|
||||
@@ -313,10 +313,10 @@ int main(int argc, char *argv[])
|
||||
irs[i] = &(IntRules.Get(i, order_quad));
|
||||
}
|
||||
|
||||
double err_u = u.ComputeL2Error(ucoeff, irs);
|
||||
double norm_u = ComputeLpNorm(2., ucoeff, *mesh, irs);
|
||||
double err_p = p.ComputeL2Error(pcoeff, irs);
|
||||
double norm_p = ComputeLpNorm(2., pcoeff, *mesh, irs);
|
||||
real_t err_u = u.ComputeL2Error(ucoeff, irs);
|
||||
real_t norm_u = ComputeLpNorm(2., ucoeff, *mesh, irs);
|
||||
real_t err_p = p.ComputeL2Error(pcoeff, irs);
|
||||
real_t norm_p = ComputeLpNorm(2., pcoeff, *mesh, irs);
|
||||
|
||||
std::cout << "|| u_h - u_ex || / || u_ex || = " << err_u / norm_u << "\n";
|
||||
std::cout << "|| p_h - p_ex || / || p_ex || = " << err_p / norm_p << "\n";
|
||||
@@ -391,9 +391,9 @@ int main(int argc, char *argv[])
|
||||
|
||||
void uFun_ex(const Vector & x, Vector & u)
|
||||
{
|
||||
double xi(x(0));
|
||||
double yi(x(1));
|
||||
double zi(0.0);
|
||||
real_t xi(x(0));
|
||||
real_t yi(x(1));
|
||||
real_t zi(0.0);
|
||||
if (x.Size() == 3)
|
||||
{
|
||||
zi = x(2);
|
||||
@@ -409,11 +409,11 @@ void uFun_ex(const Vector & x, Vector & u)
|
||||
}
|
||||
|
||||
// Change if needed
|
||||
double pFun_ex(const Vector & x)
|
||||
real_t pFun_ex(const Vector & x)
|
||||
{
|
||||
double xi(x(0));
|
||||
double yi(x(1));
|
||||
double zi(0.0);
|
||||
real_t xi(x(0));
|
||||
real_t yi(x(1));
|
||||
real_t zi(0.0);
|
||||
|
||||
if (x.Size() == 3)
|
||||
{
|
||||
@@ -428,7 +428,7 @@ void fFun(const Vector & x, Vector & f)
|
||||
f = 0.0;
|
||||
}
|
||||
|
||||
double gFun(const Vector & x)
|
||||
real_t gFun(const Vector & x)
|
||||
{
|
||||
if (x.Size() == 3)
|
||||
{
|
||||
@@ -440,7 +440,7 @@ double gFun(const Vector & x)
|
||||
}
|
||||
}
|
||||
|
||||
double f_natural(const Vector & x)
|
||||
real_t f_natural(const Vector & x)
|
||||
{
|
||||
return (-pFun_ex(x));
|
||||
}
|
||||
|
||||
+18
-18
@@ -46,10 +46,10 @@ using namespace mfem;
|
||||
|
||||
// Define the analytical solution and forcing terms / boundary conditions
|
||||
void uFun_ex(const Vector & x, Vector & u);
|
||||
double pFun_ex(const Vector & x);
|
||||
real_t pFun_ex(const Vector & x);
|
||||
void fFun(const Vector & x, Vector & f);
|
||||
double gFun(const Vector & x);
|
||||
double f_natural(const Vector & x);
|
||||
real_t gFun(const Vector & x);
|
||||
real_t f_natural(const Vector & x);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
@@ -326,8 +326,8 @@ int main(int argc, char *argv[])
|
||||
// 13. Solve the linear system with MINRES.
|
||||
// Check the norm of the unpreconditioned residual.
|
||||
int maxIter(pa ? 1000 : 500);
|
||||
double rtol(1.e-6);
|
||||
double atol(1.e-10);
|
||||
real_t rtol(1.e-6);
|
||||
real_t atol(1.e-10);
|
||||
|
||||
chrono.Clear();
|
||||
chrono.Start();
|
||||
@@ -371,10 +371,10 @@ int main(int argc, char *argv[])
|
||||
irs[i] = &(IntRules.Get(i, order_quad));
|
||||
}
|
||||
|
||||
double err_u = u->ComputeL2Error(ucoeff, irs);
|
||||
double norm_u = ComputeGlobalLpNorm(2, ucoeff, *pmesh, irs);
|
||||
double err_p = p->ComputeL2Error(pcoeff, irs);
|
||||
double norm_p = ComputeGlobalLpNorm(2, pcoeff, *pmesh, irs);
|
||||
real_t err_u = u->ComputeL2Error(ucoeff, irs);
|
||||
real_t norm_u = ComputeGlobalLpNorm(2, ucoeff, *pmesh, irs);
|
||||
real_t err_p = p->ComputeL2Error(pcoeff, irs);
|
||||
real_t norm_p = ComputeGlobalLpNorm(2, pcoeff, *pmesh, irs);
|
||||
|
||||
if (verbose)
|
||||
{
|
||||
@@ -493,9 +493,9 @@ int main(int argc, char *argv[])
|
||||
|
||||
void uFun_ex(const Vector & x, Vector & u)
|
||||
{
|
||||
double xi(x(0));
|
||||
double yi(x(1));
|
||||
double zi(0.0);
|
||||
real_t xi(x(0));
|
||||
real_t yi(x(1));
|
||||
real_t zi(0.0);
|
||||
if (x.Size() == 3)
|
||||
{
|
||||
zi = x(2);
|
||||
@@ -511,11 +511,11 @@ void uFun_ex(const Vector & x, Vector & u)
|
||||
}
|
||||
|
||||
// Change if needed
|
||||
double pFun_ex(const Vector & x)
|
||||
real_t pFun_ex(const Vector & x)
|
||||
{
|
||||
double xi(x(0));
|
||||
double yi(x(1));
|
||||
double zi(0.0);
|
||||
real_t xi(x(0));
|
||||
real_t yi(x(1));
|
||||
real_t zi(0.0);
|
||||
|
||||
if (x.Size() == 3)
|
||||
{
|
||||
@@ -530,7 +530,7 @@ void fFun(const Vector & x, Vector & f)
|
||||
f = 0.0;
|
||||
}
|
||||
|
||||
double gFun(const Vector & x)
|
||||
real_t gFun(const Vector & x)
|
||||
{
|
||||
if (x.Size() == 3)
|
||||
{
|
||||
@@ -542,7 +542,7 @@ double gFun(const Vector & x)
|
||||
}
|
||||
}
|
||||
|
||||
double f_natural(const Vector & x)
|
||||
real_t f_natural(const Vector & x)
|
||||
{
|
||||
return (-pFun_ex(x));
|
||||
}
|
||||
|
||||
+8
-8
@@ -28,8 +28,8 @@ using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
// Exact solution and r.h.s., see below for implementation.
|
||||
double analytic_solution(const Vector &x);
|
||||
double analytic_rhs(const Vector &x);
|
||||
real_t analytic_solution(const Vector &x);
|
||||
real_t analytic_rhs(const Vector &x);
|
||||
void SnapNodes(Mesh &mesh);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
@@ -81,7 +81,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
if (elem_type == 0) // inscribed octahedron
|
||||
{
|
||||
const double tri_v[6][3] =
|
||||
const real_t tri_v[6][3] =
|
||||
{
|
||||
{ 1, 0, 0}, { 0, 1, 0}, {-1, 0, 0},
|
||||
{ 0, -1, 0}, { 0, 0, 1}, { 0, 0, -1}
|
||||
@@ -105,7 +105,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
else // inscribed cube
|
||||
{
|
||||
const double quad_v[8][3] =
|
||||
const real_t quad_v[8][3] =
|
||||
{
|
||||
{-1, -1, -1}, {+1, -1, -1}, {+1, +1, -1}, {-1, +1, -1},
|
||||
{-1, -1, +1}, {+1, -1, +1}, {+1, +1, +1}, {-1, +1, +1}
|
||||
@@ -249,15 +249,15 @@ int main(int argc, char *argv[])
|
||||
return 0;
|
||||
}
|
||||
|
||||
double analytic_solution(const Vector &x)
|
||||
real_t analytic_solution(const Vector &x)
|
||||
{
|
||||
double l2 = x(0)*x(0) + x(1)*x(1) + x(2)*x(2);
|
||||
real_t l2 = x(0)*x(0) + x(1)*x(1) + x(2)*x(2);
|
||||
return x(0)*x(1)/l2;
|
||||
}
|
||||
|
||||
double analytic_rhs(const Vector &x)
|
||||
real_t analytic_rhs(const Vector &x)
|
||||
{
|
||||
double l2 = x(0)*x(0) + x(1)*x(1) + x(2)*x(2);
|
||||
real_t l2 = x(0)*x(0) + x(1)*x(1) + x(2)*x(2);
|
||||
return 7*x(0)*x(1)/l2;
|
||||
}
|
||||
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user