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@@ -50,6 +50,7 @@ examples/ex1[04-9]
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examples/ex1[0-9]p
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examples/ex2[0-9]
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examples/ex2[0-9]p
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examples/ex25-gpu
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examples/refined.mesh
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examples/displaced.mesh
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@@ -60,6 +60,10 @@ Improved GPU capabilities
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- Added support for BlockOperator on GPU. See the updated Example 5.
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- Added partial assembly and GPU support for ComplexOperator,
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[Par]ComplexGridFunction, [Par]ComplexLinearForm, and [Par]SesquilinearForm.
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See the updated Example 22.
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Discretization improvements
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---------------------------
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- Added support for matrix-free interpolation and restriction operators between
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@@ -149,9 +153,6 @@ New and updated examples and miniapps
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- Added a new meshing miniapp, Minimal Surface, which solves Plateau's problem:
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the Dirichlet problem for the minimal surface equation.
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- Added partial assembly support to Example 4/4p and Example 5/5p, with diagonal
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preconditioning.
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- Added full assembly support in Example 9/9p.
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- Added a new test problem in Example 24/24p, demonstrating a mixed bilinear
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@@ -163,7 +164,8 @@ New and updated examples and miniapps
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mesh based on element attributes. Any newly exposed boundary elements are
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assigned attribute numbers related to the trimmed element attributes.
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- Added device support in Example 5/5p.
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- Added partial assembly and device support to Example 4/4p, Example 5/5p,
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Example 22/22p, and Example 25/25p, with diagonal preconditioning.
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Improved testing
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----------------
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+30
-21
@@ -13,10 +13,10 @@
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// ex22 -m ../data/inline-hex.mesh -o 2 -p 2
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// ex22 -m ../data/star.mesh -r 1 -o 2 -sigma 10.0
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//
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// With partial assembly:
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// ex22 -m ../data/inline-quad.mesh -o 3 -p 1 -pa
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// ex22 -m ../data/inline-hex.mesh -o 2 -p 2 -pa
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// ex22 -m ../data/star.mesh -r 1 -o 2 -sigma 10.0 -pa
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// Device sample runs:
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// ex22 -m ../data/inline-quad.mesh -o 3 -p 1 -pa -d cuda
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// ex22 -m ../data/inline-hex.mesh -o 2 -p 2 -pa -d cuda
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// ex22 -m ../data/star.mesh -r 1 -o 2 -sigma 10.0 -pa -d cuda
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//
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// Description: This example code demonstrates the use of MFEM to define and
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// solve simple complex-valued linear systems. It implements three
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@@ -82,6 +82,7 @@ int main(int argc, char *argv[])
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bool herm_conv = true;
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bool exact_sol = true;
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bool pa = false;
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const char *device_config = "cpu";
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OptionsParser args(argc, argv);
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args.AddOption(&mesh_file, "-m", "--mesh",
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@@ -114,6 +115,8 @@ int main(int argc, char *argv[])
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"Enable or disable GLVis visualization.");
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args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
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"--no-partial-assembly", "Enable Partial Assembly.");
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args.AddOption(&device_config, "-d", "--device",
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"Device configuration string, see Device::Configure().");
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args.Parse();
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if (!args.Good())
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{
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@@ -143,13 +146,18 @@ int main(int argc, char *argv[])
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ComplexOperator::Convention conv =
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herm_conv ? ComplexOperator::HERMITIAN : ComplexOperator::BLOCK_SYMMETRIC;
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// 2. Read the mesh from the given mesh file. We can handle triangular,
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// 2. Enable hardware devices such as GPUs, and programming models such as
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// CUDA, OCCA, RAJA and OpenMP based on command line options.
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Device device(device_config);
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device.Print();
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// 3. Read the mesh from the given mesh file. We can handle triangular,
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// quadrilateral, tetrahedral, hexahedral, surface and volume meshes
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// with the same code.
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Mesh *mesh = new Mesh(mesh_file, 1, 1);
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int dim = mesh->Dimension();
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// 3. Refine the mesh to increase resolution. In this example we do
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// 4. Refine the mesh to increase resolution. In this example we do
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// 'ref_levels' of uniform refinement where the user specifies
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||||
// the number of levels with the '-r' option.
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||||
for (int l = 0; l < ref_levels; l++)
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@@ -157,7 +165,7 @@ int main(int argc, char *argv[])
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mesh->UniformRefinement();
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||||
}
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// 4. Define a finite element space on the mesh. Here we use continuous
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// 5. Define a finite element space on the mesh. Here we use continuous
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// Lagrange, Nedelec, or Raviart-Thomas finite elements of the specified
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||||
// order.
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||||
if (dim == 1 && prob != 0 )
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||||
@@ -179,7 +187,7 @@ int main(int argc, char *argv[])
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||||
cout << "Number of finite element unknowns: " << fespace->GetTrueVSize()
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||||
<< endl;
|
||||
|
||||
// 5. Determine the list of true (i.e. conforming) essential boundary dofs.
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||||
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
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||||
// In this example, the boundary conditions are defined based on the type
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||||
// of mesh and the problem type.
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||||
Array<int> ess_tdof_list;
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||||
@@ -191,12 +199,12 @@ int main(int argc, char *argv[])
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||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 6. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// 7. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// the FEM linear system.
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||||
ComplexLinearForm b(fespace, conv);
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||||
b.Vector::operator=(0.0);
|
||||
|
||||
// 7. Define the solution vector u as a complex finite element grid function
|
||||
// 8. Define the solution vector u as a complex finite element grid function
|
||||
// corresponding to fespace. Initialize u with initial guess of 1+0i or
|
||||
// the exact solution if it is known.
|
||||
ComplexGridFunction u(fespace);
|
||||
@@ -218,7 +226,6 @@ int main(int argc, char *argv[])
|
||||
VectorConstantCoefficient zeroVecCoef(zeroVec);
|
||||
VectorConstantCoefficient oneVecCoef(oneVec);
|
||||
|
||||
u = 0.0;
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
@@ -271,7 +278,7 @@ int main(int argc, char *argv[])
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||||
<< "window_title 'Exact: Imaginary Part'" << flush;
|
||||
}
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||||
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||||
// 8. Set up the sesquilinear form a(.,.) on the finite element space
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// 9. Set up the sesquilinear form a(.,.) on the finite element space
|
||||
// corresponding to the damped harmonic oscillator operator of the
|
||||
// appropriate type:
|
||||
//
|
||||
@@ -314,7 +321,7 @@ int main(int argc, char *argv[])
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||||
default: break; // This should be unreachable
|
||||
}
|
||||
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||||
// 8a. Set up the bilinear form for the preconditioner corresponding to the
|
||||
// 9a. Set up the bilinear form for the preconditioner corresponding to the
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||||
// appropriate operator
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||||
//
|
||||
// 0) A scalar H1 field
|
||||
@@ -349,9 +356,9 @@ int main(int argc, char *argv[])
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||||
default: break; // This should be unreachable
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||||
}
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||||
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||||
// 9. Assemble the form and the corresponding linear system, applying any
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||||
// necessary transformations such as: assembly, eliminating boundary
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||||
// conditions, conforming constraints for non-conforming AMR, etc.
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||||
// 10. Assemble the form and the corresponding linear system, applying any
|
||||
// necessary transformations such as: assembly, eliminating boundary
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||||
// conditions, conforming constraints for non-conforming AMR, etc.
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||||
a->Assemble();
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||||
pcOp->Assemble();
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||||
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||||
@@ -362,7 +369,7 @@ int main(int argc, char *argv[])
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||||
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||||
cout << "Size of linear system: " << A->Width() << endl << endl;
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||||
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||||
// 10. Define and apply a GMRES solver for AU=B with a block diagonal
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||||
// 11. Define and apply a GMRES solver for AU=B with a block diagonal
|
||||
// preconditioner based on the appropriate sparse smoother.
|
||||
{
|
||||
Array<int> blockOffsets;
|
||||
@@ -419,9 +426,11 @@ int main(int argc, char *argv[])
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||||
gmres.Mult(B, U);
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||||
}
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||||
|
||||
// 11. Recover the solution as a finite element grid function and compute the
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||||
// 12. Recover the solution as a finite element grid function and compute the
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||||
// errors if the exact solution is known.
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||||
a->RecoverFEMSolution(U, b, u);
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||||
u.real().SyncMemory(u);
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||||
u.imag().SyncMemory(u);
|
||||
|
||||
if (exact_sol)
|
||||
{
|
||||
@@ -451,7 +460,7 @@ int main(int argc, char *argv[])
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||||
cout << endl;
|
||||
}
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||||
|
||||
// 12. Save the refined mesh and the solution. This output can be viewed
|
||||
// 13. Save the refined mesh and the solution. This output can be viewed
|
||||
// later using GLVis: "glvis -m mesh -g sol".
|
||||
{
|
||||
ofstream mesh_ofs("refined.mesh");
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||||
@@ -466,7 +475,7 @@ int main(int argc, char *argv[])
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||||
u.imag().Save(sol_i_ofs);
|
||||
}
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||||
|
||||
// 13. Send the solution by socket to a GLVis server.
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||||
// 14. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
@@ -525,7 +534,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 14. Free the used memory.
|
||||
// 15. Free the used memory.
|
||||
delete a;
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||||
delete u_exact;
|
||||
delete pcOp;
|
||||
|
||||
+31
-23
@@ -13,10 +13,10 @@
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||||
// mpirun -np 4 ex22p -m ../data/inline-hex.mesh -o 2 -p 2
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||||
// mpirun -np 4 ex22p -m ../data/star.mesh -o 2 -sigma 10.0
|
||||
//
|
||||
// With partial assembly:
|
||||
// mpirun -np 4 ex22p -m ../data/inline-quad.mesh -o 1 -p 1 -pa
|
||||
// mpirun -np 4 ex22p -m ../data/inline-hex.mesh -o 1 -p 2 -pa
|
||||
// mpirun -np 4 ex22p -m ../data/star.mesh -o 2 -sigma 10.0 -pa
|
||||
// Device sample runs:
|
||||
// mpirun -np 4 ex22p -m ../data/inline-quad.mesh -o 1 -p 1 -pa -d cuda
|
||||
// mpirun -np 4 ex22p -m ../data/inline-hex.mesh -o 1 -p 2 -pa -d cuda
|
||||
// mpirun -np 4 ex22p -m ../data/star.mesh -o 2 -sigma 10.0 -pa -d cuda
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to define and
|
||||
// solve simple complex-valued linear systems. It implements three
|
||||
@@ -46,7 +46,6 @@
|
||||
// We recommend viewing examples 1, 3 and 4 before viewing this
|
||||
// example.
|
||||
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
@@ -90,6 +89,7 @@ int main(int argc, char *argv[])
|
||||
bool herm_conv = true;
|
||||
bool exact_sol = true;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -124,6 +124,8 @@ int main(int argc, char *argv[])
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
@@ -160,19 +162,24 @@ int main(int argc, char *argv[])
|
||||
ComplexOperator::Convention conv =
|
||||
herm_conv ? ComplexOperator::HERMITIAN : ComplexOperator::BLOCK_SYMMETRIC;
|
||||
|
||||
// 3. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// 3. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 4. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
|
||||
// and volume meshes with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 4. Refine the serial mesh on all processors to increase the resolution.
|
||||
// 5. Refine the serial mesh on all processors to increase the resolution.
|
||||
for (int l = 0; l < ser_ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
@@ -182,7 +189,7 @@ int main(int argc, char *argv[])
|
||||
pmesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 6. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// 7. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use continuous Lagrange, Nedelec, or Raviart-Thomas finite elements of
|
||||
// the specified order.
|
||||
if (dim == 1 && prob != 0 )
|
||||
@@ -210,7 +217,7 @@ int main(int argc, char *argv[])
|
||||
cout << "Number of finite element unknowns: " << size << endl;
|
||||
}
|
||||
|
||||
// 7. Determine the list of true (i.e. parallel conforming) essential
|
||||
// 8. Determine the list of true (i.e. parallel conforming) essential
|
||||
// boundary dofs. In this example, the boundary conditions are defined
|
||||
// based on the type of mesh and the problem type.
|
||||
Array<int> ess_tdof_list;
|
||||
@@ -222,14 +229,14 @@ int main(int argc, char *argv[])
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 8. Set up the parallel linear form b(.) which corresponds to the
|
||||
// 9. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system.
|
||||
ParComplexLinearForm b(fespace, conv);
|
||||
b.Vector::operator=(0.0);
|
||||
|
||||
// 9. Define the solution vector u as a parallel complex finite element grid
|
||||
// function corresponding to fespace. Initialize u with initial guess of
|
||||
// 1+0i or the exact solution if it is known.
|
||||
// 10. Define the solution vector u as a parallel complex finite element grid
|
||||
// function corresponding to fespace. Initialize u with initial guess of
|
||||
// 1+0i or the exact solution if it is known.
|
||||
ParComplexGridFunction u(fespace);
|
||||
ParComplexGridFunction * u_exact = NULL;
|
||||
if (exact_sol) { u_exact = new ParComplexGridFunction(fespace); }
|
||||
@@ -249,7 +256,6 @@ int main(int argc, char *argv[])
|
||||
VectorConstantCoefficient zeroVecCoef(zeroVec);
|
||||
VectorConstantCoefficient oneVecCoef(oneVec);
|
||||
|
||||
u = 0.0;
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
@@ -304,7 +310,7 @@ int main(int argc, char *argv[])
|
||||
<< "window_title 'Exact: Imaginary Part'" << flush;
|
||||
}
|
||||
|
||||
// 10. Set up the parallel sesquilinear form a(.,.) on the finite element
|
||||
// 11. Set up the parallel sesquilinear form a(.,.) on the finite element
|
||||
// space corresponding to the damped harmonic oscillator operator of the
|
||||
// appropriate type:
|
||||
//
|
||||
@@ -347,7 +353,7 @@ int main(int argc, char *argv[])
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
|
||||
// 10a. Set up the parallel bilinear form for the preconditioner
|
||||
// 11a. Set up the parallel bilinear form for the preconditioner
|
||||
// corresponding to the appropriate operator
|
||||
//
|
||||
// 0) A scalar H1 field
|
||||
@@ -381,7 +387,7 @@ int main(int argc, char *argv[])
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
|
||||
// 11. Assemble the parallel bilinear form and the corresponding linear
|
||||
// 12. Assemble the parallel bilinear form and the corresponding linear
|
||||
// system, applying any necessary transformations such as: parallel
|
||||
// assembly, eliminating boundary conditions, applying conforming
|
||||
// constraints for non-conforming AMR, etc.
|
||||
@@ -399,7 +405,7 @@ int main(int argc, char *argv[])
|
||||
<< 2 * fespace->GlobalTrueVSize() << endl << endl;
|
||||
}
|
||||
|
||||
// 12. Define and apply a parallel FGMRES solver for AU=B with a block
|
||||
// 13. Define and apply a parallel FGMRES solver for AU=B with a block
|
||||
// diagonal preconditioner based on the appropriate multigrid
|
||||
// preconditioner from hypre.
|
||||
{
|
||||
@@ -460,9 +466,11 @@ int main(int argc, char *argv[])
|
||||
fgmres.SetPrintLevel(1);
|
||||
fgmres.Mult(B, U);
|
||||
}
|
||||
// 13. Recover the parallel grid function corresponding to U. This is the
|
||||
// 14. Recover the parallel grid function corresponding to U. This is the
|
||||
// local finite element solution on each processor.
|
||||
a->RecoverFEMSolution(U, b, u);
|
||||
u.real().SyncMemory(u);
|
||||
u.imag().SyncMemory(u);
|
||||
|
||||
if (exact_sol)
|
||||
{
|
||||
@@ -495,7 +503,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 14. Save the refined mesh and the solution in parallel. This output can be
|
||||
// 15. Save the refined mesh and the solution in parallel. This output can be
|
||||
// viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
|
||||
{
|
||||
ostringstream mesh_name, sol_r_name, sol_i_name;
|
||||
@@ -515,7 +523,7 @@ int main(int argc, char *argv[])
|
||||
u.imag().Save(sol_i_ofs);
|
||||
}
|
||||
|
||||
// 15. Send the solution by socket to a GLVis server.
|
||||
// 16. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
@@ -580,7 +588,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 16. Free the used memory.
|
||||
// 17. Free the used memory.
|
||||
delete a;
|
||||
delete u_exact;
|
||||
delete pcOp;
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
+69
-31
@@ -10,6 +10,10 @@
|
||||
// ex25 -o 2 -f 8.0 -ref 3 -prob 4 -m ../data/inline-quad.mesh
|
||||
// ex25 -o 2 -f 2.0 -ref 1 -prob 4 -m ../data/inline-hex.mesh
|
||||
//
|
||||
// Device sample runs:
|
||||
// ex25 -o 2 -f 8.0 -ref 3 -prob 4 -m ../data/inline-quad.mesh -pa -d cuda
|
||||
// ex25 -o 2 -f 2.0 -ref 1 -prob 4 -m ../data/inline-hex.mesh -pa -d cuda
|
||||
//
|
||||
// Description: This example code solves a simple electromagnetic wave
|
||||
// propagation problem corresponding to the second order
|
||||
// indefinite Maxwell equation
|
||||
@@ -153,6 +157,8 @@ int main(int argc, char *argv[])
|
||||
double freq = 5.0;
|
||||
bool herm_conv = true;
|
||||
bool visualization = 1;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -174,12 +180,21 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.Parse();
|
||||
|
||||
if (iprob > 4) { iprob = 4; }
|
||||
prob = (prob_type)iprob;
|
||||
|
||||
// 2. Setup the mesh
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 3. Setup the mesh
|
||||
if (!mesh_file)
|
||||
{
|
||||
exact_known = true;
|
||||
@@ -220,7 +235,7 @@ int main(int argc, char *argv[])
|
||||
// Setup PML length
|
||||
Array2D<double> length(dim, 2); length = 0.0;
|
||||
|
||||
// 3. Setup the Cartesian PML region.
|
||||
// 4. Setup the Cartesian PML region.
|
||||
switch (prob)
|
||||
{
|
||||
case disc:
|
||||
@@ -246,19 +261,19 @@ int main(int argc, char *argv[])
|
||||
comp_domain_bdr = pml->GetCompDomainBdr();
|
||||
domain_bdr = pml->GetDomainBdr();
|
||||
|
||||
// 4. Refine the mesh to increase the resolution.
|
||||
// 5. Refine the mesh to increase the resolution.
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 5. Reorient mesh in case of a tet mesh
|
||||
// 6. Reorient mesh in case of a tet mesh
|
||||
mesh->ReorientTetMesh();
|
||||
|
||||
// Set element attributes in order to distinguish elements in the PML region
|
||||
pml->SetAttributes(mesh);
|
||||
|
||||
// 6. Define a finite element space on the mesh. Here we use the Nedelec
|
||||
// 7. Define a finite element space on the mesh. Here we use the Nedelec
|
||||
// finite elements of the specified order.
|
||||
FiniteElementCollection *fec = new ND_FECollection(order, dim);
|
||||
FiniteElementSpace *fespace = new FiniteElementSpace(mesh, fec);
|
||||
@@ -266,7 +281,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
cout << "Number of finite element unknowns: " << size << endl;
|
||||
|
||||
// 7. Determine the list of true essential boundary dofs. In this example,
|
||||
// 8. Determine the list of true essential boundary dofs. In this example,
|
||||
// the boundary conditions are defined based on the specific mesh and the
|
||||
// problem type.
|
||||
Array<int> ess_tdof_list;
|
||||
@@ -308,12 +323,12 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
|
||||
// 8. Setup Complex Operator convention
|
||||
// 9. Setup Complex Operator convention
|
||||
ComplexOperator::Convention conv =
|
||||
herm_conv ? ComplexOperator::HERMITIAN : ComplexOperator::BLOCK_SYMMETRIC;
|
||||
|
||||
// 9. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// the FEM linear system.
|
||||
// 10. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// the FEM linear system.
|
||||
VectorFunctionCoefficient f(dim, source);
|
||||
ComplexLinearForm b(fespace, conv);
|
||||
if (prob == load_src)
|
||||
@@ -323,7 +338,7 @@ int main(int argc, char *argv[])
|
||||
b.Vector::operator=(0.0);
|
||||
b.Assemble();
|
||||
|
||||
// 10. Define the solution vector x as a complex finite element grid function
|
||||
// 11. Define the solution vector x as a complex finite element grid function
|
||||
// corresponding to fespace.
|
||||
ComplexGridFunction x(fespace);
|
||||
x = 0.0;
|
||||
@@ -331,7 +346,7 @@ int main(int argc, char *argv[])
|
||||
VectorFunctionCoefficient E_Im(dim, E_bdr_data_Im);
|
||||
x.ProjectBdrCoefficientTangent(E_Re, E_Im, ess_bdr);
|
||||
|
||||
// 11. Set up the sesquilinear form a(.,.)
|
||||
// 12. Set up the sesquilinear form a(.,.)
|
||||
//
|
||||
// In Comp
|
||||
// Domain: 1/mu (Curl E, Curl F) - omega^2 * epsilon (E,F)
|
||||
@@ -385,26 +400,30 @@ int main(int argc, char *argv[])
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(restr_c2_Re),
|
||||
new VectorFEMassIntegrator(restr_c2_Im));
|
||||
|
||||
// 12. Assemble the bilinear form and the corresponding linear system,
|
||||
// 13. Assemble the bilinear form and the corresponding linear system,
|
||||
// applying any necessary transformations such as: assembly, eliminating
|
||||
// boundary conditions, applying conforming constraints for
|
||||
// non-conforming AMR, etc.
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
#endif
|
||||
a.Assemble(0);
|
||||
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
|
||||
|
||||
// 13. Solve using a direct or an iterative solver
|
||||
// 14. Solve using a direct or an iterative solver
|
||||
#ifdef MFEM_USE_SUITESPARSE
|
||||
{
|
||||
if (pa) { cout << "PA not available with MFEM_USE_SUITESPARSE" << endl; }
|
||||
ComplexUMFPackSolver csolver(*A.As<ComplexSparseMatrix>());
|
||||
csolver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
csolver.SetPrintLevel(1);
|
||||
csolver.Mult(B, X);
|
||||
}
|
||||
#else
|
||||
// 13a. Set up the Bilinear form a(.,.) for the preconditioner
|
||||
// 14a. Set up the Bilinear form a(.,.) for the preconditioner
|
||||
//
|
||||
// In Comp
|
||||
// Domain: 1/mu (Curl E, Curl F) + omega^2 * epsilon (E,F)
|
||||
@@ -430,39 +449,58 @@ int main(int argc, char *argv[])
|
||||
prec.AddDomainIntegrator(new CurlCurlIntegrator(restr_c1_abs));
|
||||
prec.AddDomainIntegrator(new VectorFEMassIntegrator(restr_c2_abs));
|
||||
|
||||
if (pa) { prec.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
prec.Assemble();
|
||||
|
||||
OperatorPtr PCOpAh;
|
||||
prec.FormSystemMatrix(ess_tdof_list, PCOpAh);
|
||||
|
||||
// 13b. Define and apply a GMRES solver for AU=B with a block diagonal
|
||||
// preconditioner based on the Gauss-Seidel sparse smoother.
|
||||
// 14b. Define and apply a GMRES solver for AU=B with a block diagonal
|
||||
// preconditioner based on the Gauss-Seidel or Jacobi sparse smoother.
|
||||
Array<int> offsets(3);
|
||||
offsets[0] = 0;
|
||||
offsets[1] = fespace->GetTrueVSize();
|
||||
offsets[2] = fespace->GetTrueVSize();
|
||||
offsets.PartialSum();
|
||||
|
||||
GSSmoother gs00(*PCOpAh.As<SparseMatrix>());
|
||||
BlockDiagonalPreconditioner BlockGS(offsets);
|
||||
ScaledOperator gs11(&gs00,
|
||||
(conv == ComplexOperator::HERMITIAN) ? -1.0 : 1.0);
|
||||
BlockGS.SetDiagonalBlock(0,&gs00);
|
||||
BlockGS.SetDiagonalBlock(1,&gs11);
|
||||
Operator *pc_r = nullptr;
|
||||
Operator *pc_i = nullptr;
|
||||
int s = (conv == ComplexOperator::HERMITIAN) ? -1.0 : 1.0;
|
||||
if (pa)
|
||||
{
|
||||
// Jacobi Smoother
|
||||
OperatorJacobiSmoother *d00 = new OperatorJacobiSmoother(prec, ess_tdof_list);
|
||||
ScaledOperator *d11 = new ScaledOperator(d00, s);
|
||||
pc_r = d00;
|
||||
pc_i = d11;
|
||||
}
|
||||
else
|
||||
{
|
||||
OperatorPtr PCOpAh;
|
||||
prec.SetDiagonalPolicy(mfem::Operator::DIAG_ONE);
|
||||
prec.FormSystemMatrix(ess_tdof_list, PCOpAh);
|
||||
|
||||
// Gauss-Seidel Smoother
|
||||
GSSmoother *gs00 = new GSSmoother(*PCOpAh.As<SparseMatrix>());
|
||||
ScaledOperator *gs11 = new ScaledOperator(gs00, s);
|
||||
pc_r = gs00;
|
||||
pc_i = gs11;
|
||||
}
|
||||
|
||||
BlockDiagonalPreconditioner BlockDP(offsets);
|
||||
BlockDP.SetDiagonalBlock(0, pc_r);
|
||||
BlockDP.SetDiagonalBlock(1, pc_i);
|
||||
|
||||
GMRESSolver gmres;
|
||||
gmres.SetPrintLevel(1);
|
||||
gmres.SetKDim(200);
|
||||
gmres.SetMaxIter(2000);
|
||||
gmres.SetMaxIter(pa ? 5000 : 2000);
|
||||
gmres.SetRelTol(1e-5);
|
||||
gmres.SetAbsTol(0.0);
|
||||
gmres.SetOperator(*A);
|
||||
gmres.SetPreconditioner(BlockGS);
|
||||
gmres.SetPreconditioner(BlockDP);
|
||||
gmres.Mult(B, X);
|
||||
}
|
||||
#endif
|
||||
|
||||
// 14. Recover the solution as a finite element grid function and compute the
|
||||
// 15. Recover the solution as a finite element grid function and compute the
|
||||
// errors if the exact solution is known.
|
||||
a.RecoverFEMSolution(X, b, x);
|
||||
|
||||
@@ -499,7 +537,7 @@ int main(int argc, char *argv[])
|
||||
<< sqrt(L2Error_Re*L2Error_Re + L2Error_Im*L2Error_Im) << "\n\n";
|
||||
}
|
||||
|
||||
// 15. Save the refined mesh and the solution. This output can be viewed
|
||||
// 16. Save the refined mesh and the solution. This output can be viewed
|
||||
// later using GLVis: "glvis -m mesh -g sol".
|
||||
{
|
||||
ofstream mesh_ofs("ex25.mesh");
|
||||
@@ -514,7 +552,7 @@ int main(int argc, char *argv[])
|
||||
x.imag().Save(sol_i_ofs);
|
||||
}
|
||||
|
||||
// 16. Send the solution by socket to a GLVis server.
|
||||
// 17. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
// Define visualization keys for GLVis (see GLVis documentation)
|
||||
@@ -565,7 +603,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 17. Free the used memory.
|
||||
// 18. Free the used memory.
|
||||
delete pml;
|
||||
delete fespace;
|
||||
delete fec;
|
||||
|
||||
+64
-27
@@ -10,6 +10,10 @@
|
||||
// mpirun -np 4 ex25p -o 2 -f 8.0 -rs 2 -rp 2 -prob 4 -m ../data/inline-quad.mesh
|
||||
// mpirun -np 4 ex25p -o 2 -f 2.0 -rs 1 -rp 1 -prob 4 -m ../data/inline-hex.mesh
|
||||
//
|
||||
// Device sample runs:
|
||||
// mpirun -np 4 ex25p -o 1 -f 3.0 -rs 3 -rp 1 -prob 2 -pa -d cuda
|
||||
// mpirun -np 4 ex25p -o 2 -f 1.0 -rs 1 -rp 1 -prob 3 -pa -d cuda
|
||||
//
|
||||
// Description: This example code solves a simple electromagnetic wave
|
||||
// propagation problem corresponding to the second order
|
||||
// indefinite Maxwell equation
|
||||
@@ -160,6 +164,8 @@ int main(int argc, char *argv[])
|
||||
double freq = 5.0;
|
||||
bool herm_conv = true;
|
||||
bool visualization = 1;
|
||||
bool pa = false;
|
||||
const char *device_config = "cpu";
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -183,12 +189,21 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.Parse();
|
||||
|
||||
if (iprob > 4) { iprob = 4; }
|
||||
prob = (prob_type)iprob;
|
||||
|
||||
// 3. Setup the (serial) mesh on all processors.
|
||||
// 3. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 4. Setup the (serial) mesh on all processors.
|
||||
if (!mesh_file)
|
||||
{
|
||||
exact_known = true;
|
||||
@@ -236,7 +251,7 @@ int main(int argc, char *argv[])
|
||||
// Setup PML length
|
||||
Array2D<double> length(dim, 2); length = 0.0;
|
||||
|
||||
// 4. Setup the Cartesian PML region.
|
||||
// 5. Setup the Cartesian PML region.
|
||||
switch (prob)
|
||||
{
|
||||
case disc:
|
||||
@@ -262,13 +277,13 @@ int main(int argc, char *argv[])
|
||||
comp_domain_bdr = pml->GetCompDomainBdr();
|
||||
domain_bdr = pml->GetDomainBdr();
|
||||
|
||||
// 5. Refine the serial mesh on all processors to increase the resolution.
|
||||
// 6. Refine the serial mesh on all processors to increase the resolution.
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 6. Define a parallel mesh by a partitioning of the serial mesh.
|
||||
// 7. Define a parallel mesh by a partitioning of the serial mesh.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
delete mesh;
|
||||
{
|
||||
@@ -278,13 +293,13 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 6a. Reorient mesh in case of a tet mesh
|
||||
// 7a. Reorient mesh in case of a tet mesh
|
||||
pmesh->ReorientTetMesh();
|
||||
|
||||
// 7. Set element attributes in order to distinguish elements in the PML
|
||||
// 8. Set element attributes in order to distinguish elements in the PML
|
||||
pml->SetAttributes(pmesh);
|
||||
|
||||
// 8. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// 9. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use the Nedelec finite elements of the specified order.
|
||||
FiniteElementCollection *fec = new ND_FECollection(order, dim);
|
||||
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
|
||||
@@ -294,9 +309,9 @@ int main(int argc, char *argv[])
|
||||
cout << "Number of finite element unknowns: " << size << endl;
|
||||
}
|
||||
|
||||
// 9. Determine the list of true (i.e. parallel conforming) essential
|
||||
// boundary dofs. In this example, the boundary conditions are defined
|
||||
// based on the specific mesh and the problem type.
|
||||
// 10. Determine the list of true (i.e. parallel conforming) essential
|
||||
// boundary dofs. In this example, the boundary conditions are defined
|
||||
// based on the specific mesh and the problem type.
|
||||
Array<int> ess_tdof_list;
|
||||
Array<int> ess_bdr;
|
||||
if (pmesh->bdr_attributes.Size())
|
||||
@@ -336,11 +351,11 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
|
||||
// 10. Setup Complex Operator convention
|
||||
// 11. Setup Complex Operator convention
|
||||
ComplexOperator::Convention conv =
|
||||
herm_conv ? ComplexOperator::HERMITIAN : ComplexOperator::BLOCK_SYMMETRIC;
|
||||
|
||||
// 11. Set up the parallel linear form b(.) which corresponds to the
|
||||
// 12. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system.
|
||||
VectorFunctionCoefficient f(dim, source);
|
||||
ParComplexLinearForm b(fespace, conv);
|
||||
@@ -351,7 +366,7 @@ int main(int argc, char *argv[])
|
||||
b.Vector::operator=(0.0);
|
||||
b.Assemble();
|
||||
|
||||
// 12. Define the solution vector x as a parallel complex finite element grid
|
||||
// 13. Define the solution vector x as a parallel complex finite element grid
|
||||
// function corresponding to fespace.
|
||||
ParComplexGridFunction x(fespace);
|
||||
x = 0.0;
|
||||
@@ -359,7 +374,7 @@ int main(int argc, char *argv[])
|
||||
VectorFunctionCoefficient E_Im(dim, E_bdr_data_Im);
|
||||
x.ProjectBdrCoefficientTangent(E_Re, E_Im, ess_bdr);
|
||||
|
||||
// 13. Set up the parallel sesquilinear form a(.,.)
|
||||
// 14. Set up the parallel sesquilinear form a(.,.)
|
||||
//
|
||||
// In Comp
|
||||
// Domain: 1/mu (Curl E, Curl F) - omega^2 * epsilon (E,F)
|
||||
@@ -413,19 +428,23 @@ int main(int argc, char *argv[])
|
||||
a.AddDomainIntegrator(new VectorFEMassIntegrator(restr_c2_Re),
|
||||
new VectorFEMassIntegrator(restr_c2_Im));
|
||||
|
||||
// 14. Assemble the parallel bilinear form and the corresponding linear
|
||||
// 15. Assemble the parallel bilinear form and the corresponding linear
|
||||
// system, applying any necessary transformations such as: parallel
|
||||
// assembly, eliminating boundary conditions, applying conforming
|
||||
// constraints for non-conforming AMR, etc.
|
||||
#ifndef MFEM_USE_SUPERLU
|
||||
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
#endif
|
||||
a.Assemble();
|
||||
|
||||
OperatorPtr Ah;
|
||||
Vector B, X;
|
||||
a.FormLinearSystem(ess_tdof_list, x, b, Ah, X, B);
|
||||
|
||||
// 15. Solve using a direct or an iterative solver
|
||||
// 16. Solve using a direct or an iterative solver
|
||||
#ifdef MFEM_USE_SUPERLU
|
||||
{
|
||||
if (pa) { cout << "PA not available with MFEM_USE_SUPERLU" << endl; }
|
||||
// Transform to monolithic HypreParMatrix
|
||||
HypreParMatrix *A = Ah.As<ComplexHypreParMatrix>()->GetSystemMatrix();
|
||||
SuperLURowLocMatrix SA(*A);
|
||||
@@ -464,11 +483,9 @@ int main(int argc, char *argv[])
|
||||
prec.AddDomainIntegrator(new CurlCurlIntegrator(restr_c1_abs));
|
||||
prec.AddDomainIntegrator(new VectorFEMassIntegrator(restr_c2_abs));
|
||||
|
||||
if (pa) { prec.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
prec.Assemble();
|
||||
|
||||
OperatorPtr PCOpAh;
|
||||
prec.FormSystemMatrix(ess_tdof_list, PCOpAh);
|
||||
|
||||
// 16b. Define and apply a parallel GMRES solver for AU=B with a block
|
||||
// diagonal preconditioner based on hypre's AMS preconditioner.
|
||||
Array<int> offsets(3);
|
||||
@@ -477,21 +494,41 @@ int main(int argc, char *argv[])
|
||||
offsets[2] = fespace->GetTrueVSize();
|
||||
offsets.PartialSum();
|
||||
|
||||
HypreAMS ams00(*PCOpAh.As<HypreParMatrix>(),fespace);
|
||||
BlockDiagonalPreconditioner BlockAMS(offsets);
|
||||
ScaledOperator ams11(&ams00,
|
||||
(conv == ComplexOperator::HERMITIAN) ? -1.0 : 1.0);
|
||||
BlockAMS.SetDiagonalBlock(0,&ams00);
|
||||
BlockAMS.SetDiagonalBlock(1,&ams11);
|
||||
Operator *pc_r = nullptr;
|
||||
Operator *pc_i = nullptr;
|
||||
int s = (conv == ComplexOperator::HERMITIAN) ? -1.0 : 1.0;
|
||||
if (pa)
|
||||
{
|
||||
// Jacobi Smoother
|
||||
OperatorJacobiSmoother *d00 = new OperatorJacobiSmoother(prec, ess_tdof_list);
|
||||
ScaledOperator *d11 = new ScaledOperator(d00, s);
|
||||
pc_r = d00;
|
||||
pc_i = d11;
|
||||
}
|
||||
else
|
||||
{
|
||||
OperatorPtr PCOpAh;
|
||||
prec.FormSystemMatrix(ess_tdof_list, PCOpAh);
|
||||
|
||||
// Hypre AMS
|
||||
HypreAMS *ams00 = new HypreAMS(*PCOpAh.As<HypreParMatrix>(), fespace);
|
||||
ScaledOperator *ams11 = new ScaledOperator(ams00, s);
|
||||
pc_r = ams00;
|
||||
pc_i = ams11;
|
||||
}
|
||||
|
||||
BlockDiagonalPreconditioner BlockDP(offsets);
|
||||
BlockDP.SetDiagonalBlock(0, pc_r);
|
||||
BlockDP.SetDiagonalBlock(1, pc_i);
|
||||
|
||||
GMRESSolver gmres(MPI_COMM_WORLD);
|
||||
gmres.SetPrintLevel(1);
|
||||
gmres.SetKDim(200);
|
||||
gmres.SetMaxIter(2000);
|
||||
gmres.SetMaxIter(pa ? 5000 : 2000);
|
||||
gmres.SetRelTol(1e-5);
|
||||
gmres.SetAbsTol(0.0);
|
||||
gmres.SetOperator(*Ah);
|
||||
gmres.SetPreconditioner(BlockAMS);
|
||||
gmres.SetPreconditioner(BlockDP);
|
||||
gmres.Mult(B, X);
|
||||
}
|
||||
#endif
|
||||
|
||||
+326
-159
@@ -10,6 +10,7 @@
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "complex_fem.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
@@ -19,16 +20,21 @@ namespace mfem
|
||||
ComplexGridFunction::ComplexGridFunction(FiniteElementSpace *fes)
|
||||
: Vector(2*(fes->GetVSize()))
|
||||
{
|
||||
gfr = new GridFunction(fes, data);
|
||||
gfi = new GridFunction(fes, &data[fes->GetVSize()]);
|
||||
UseDevice(true);
|
||||
this->Vector::operator=(0.0);
|
||||
|
||||
gfr = new GridFunction();
|
||||
gfr->MakeRef(fes, *this, 0);
|
||||
|
||||
gfi = new GridFunction();
|
||||
gfi->MakeRef(fes, *this, fes->GetVSize());
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::Update()
|
||||
{
|
||||
FiniteElementSpace * fes = gfr->FESpace();
|
||||
|
||||
int vsize = fes->GetVSize();
|
||||
FiniteElementSpace *fes = gfr->FESpace();
|
||||
const int vsize = fes->GetVSize();
|
||||
|
||||
const Operator *T = fes->GetUpdateOperator();
|
||||
if (T)
|
||||
@@ -40,30 +46,36 @@ ComplexGridFunction::Update()
|
||||
|
||||
// Our data array now contains old data as well as being the wrong size so
|
||||
// reallocate it.
|
||||
UseDevice(true);
|
||||
this->SetSize(2 * vsize);
|
||||
this->Vector::operator=(0.0);
|
||||
|
||||
// Create temporary vectors which point to the new data array
|
||||
Vector gf_r(data, vsize);
|
||||
Vector gf_i((data) ? &data[vsize] : data, vsize);
|
||||
Vector gf_r; gf_r.MakeRef(*this, 0, vsize);
|
||||
Vector gf_i; gf_i.MakeRef(*this, vsize, vsize);
|
||||
|
||||
// Copy the updated GridFunctions into the new data array
|
||||
gf_r = *gfr;
|
||||
gf_i = *gfi;
|
||||
gf_r.SyncAliasMemory(*this);
|
||||
gf_i.SyncAliasMemory(*this);
|
||||
|
||||
// Replace the individual data arrays with pointers into the new data
|
||||
// array
|
||||
gfr->NewDataAndSize(data, vsize);
|
||||
gfi->NewDataAndSize((data) ? &data[vsize] : data, vsize);
|
||||
gfr->MakeRef(*this, 0, vsize);
|
||||
gfi->MakeRef(*this, vsize, vsize);
|
||||
}
|
||||
else
|
||||
{
|
||||
// The existing data will not be transferred to the new GridFunctions so
|
||||
// delete it a allocate a new array
|
||||
// delete it and allocate a new array
|
||||
UseDevice(true);
|
||||
this->SetSize(2 * vsize);
|
||||
this->Vector::operator=(0.0);
|
||||
|
||||
// Point the individual GridFunctions to the new data array
|
||||
gfr->NewDataAndSize(data, vsize);
|
||||
gfi->NewDataAndSize((data) ? &data[vsize] : data, vsize);
|
||||
gfr->MakeRef(*this, 0, vsize);
|
||||
gfi->MakeRef(*this, vsize, vsize);
|
||||
|
||||
// These updates will only set the proper 'sequence' value within the
|
||||
// individual GridFunction objects because their sizes are already correct
|
||||
@@ -76,16 +88,24 @@ void
|
||||
ComplexGridFunction::ProjectCoefficient(Coefficient &real_coeff,
|
||||
Coefficient &imag_coeff)
|
||||
{
|
||||
gfr->SyncMemory(*this);
|
||||
gfi->SyncMemory(*this);
|
||||
gfr->ProjectCoefficient(real_coeff);
|
||||
gfi->ProjectCoefficient(imag_coeff);
|
||||
gfr->SyncAliasMemory(*this);
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectCoefficient(VectorCoefficient &real_vcoeff,
|
||||
VectorCoefficient &imag_vcoeff)
|
||||
{
|
||||
gfr->SyncMemory(*this);
|
||||
gfi->SyncMemory(*this);
|
||||
gfr->ProjectCoefficient(real_vcoeff);
|
||||
gfi->ProjectCoefficient(imag_vcoeff);
|
||||
gfr->SyncAliasMemory(*this);
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
@@ -93,8 +113,12 @@ ComplexGridFunction::ProjectBdrCoefficient(Coefficient &real_coeff,
|
||||
Coefficient &imag_coeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
gfr->SyncMemory(*this);
|
||||
gfi->SyncMemory(*this);
|
||||
gfr->ProjectBdrCoefficient(real_coeff, attr);
|
||||
gfi->ProjectBdrCoefficient(imag_coeff, attr);
|
||||
gfr->SyncAliasMemory(*this);
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
@@ -102,8 +126,12 @@ ComplexGridFunction::ProjectBdrCoefficientNormal(VectorCoefficient &real_vcoeff,
|
||||
VectorCoefficient &imag_vcoeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
gfr->SyncMemory(*this);
|
||||
gfi->SyncMemory(*this);
|
||||
gfr->ProjectBdrCoefficientNormal(real_vcoeff, attr);
|
||||
gfi->ProjectBdrCoefficientNormal(imag_vcoeff, attr);
|
||||
gfr->SyncAliasMemory(*this);
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
@@ -113,18 +141,28 @@ ComplexGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient
|
||||
&imag_vcoeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
gfr->SyncMemory(*this);
|
||||
gfi->SyncMemory(*this);
|
||||
gfr->ProjectBdrCoefficientTangent(real_vcoeff, attr);
|
||||
gfi->ProjectBdrCoefficientTangent(imag_vcoeff, attr);
|
||||
gfr->SyncAliasMemory(*this);
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
|
||||
ComplexLinearForm::ComplexLinearForm(FiniteElementSpace *f,
|
||||
ComplexLinearForm::ComplexLinearForm(FiniteElementSpace *fes,
|
||||
ComplexOperator::Convention convention)
|
||||
: Vector(2*(f->GetVSize())),
|
||||
: Vector(2*(fes->GetVSize())),
|
||||
conv(convention)
|
||||
{
|
||||
lfr = new LinearForm(f, data);
|
||||
lfi = new LinearForm(f, &data[f->GetVSize()]);
|
||||
UseDevice(true);
|
||||
this->Vector::operator=(0.0);
|
||||
|
||||
lfr = new LinearForm();
|
||||
lfr->MakeRef(fes, *this, 0);
|
||||
|
||||
lfi = new LinearForm();
|
||||
lfi->MakeRef(fes, *this, fes->GetVSize());
|
||||
}
|
||||
|
||||
ComplexLinearForm::ComplexLinearForm(FiniteElementSpace *fes,
|
||||
@@ -133,8 +171,14 @@ ComplexLinearForm::ComplexLinearForm(FiniteElementSpace *fes,
|
||||
: Vector(2*(fes->GetVSize())),
|
||||
conv(convention)
|
||||
{
|
||||
lfr = new LinearForm(fes, lf_r); lfr->SetData(data);
|
||||
lfi = new LinearForm(fes, lf_i); lfi->SetData(&data[fes->GetVSize()]);
|
||||
UseDevice(true);
|
||||
this->Vector::operator=(0.0);
|
||||
|
||||
lfr = new LinearForm(fes, lf_r);
|
||||
lfi = new LinearForm(fes, lf_i);
|
||||
|
||||
lfr->MakeRef(fes, *this, 0);
|
||||
lfi->MakeRef(fes, *this, fes->GetVSize());
|
||||
}
|
||||
|
||||
ComplexLinearForm::~ComplexLinearForm()
|
||||
@@ -189,42 +233,43 @@ void
|
||||
ComplexLinearForm::Update()
|
||||
{
|
||||
FiniteElementSpace *fes = lfr->FESpace();
|
||||
|
||||
this->Update(fes);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexLinearForm::Update(FiniteElementSpace *fes)
|
||||
{
|
||||
int vsize = fes->GetVSize();
|
||||
SetSize(2 * vsize);
|
||||
UseDevice(true);
|
||||
SetSize(2 * fes->GetVSize());
|
||||
this->Vector::operator=(0.0);
|
||||
|
||||
Vector vlfr(data, vsize);
|
||||
Vector vlfi((data) ? &data[vsize] : data, vsize);
|
||||
|
||||
lfr->Update(fes, vlfr, 0);
|
||||
lfi->Update(fes, vlfi, 0);
|
||||
lfr->MakeRef(fes, *this, 0);
|
||||
lfi->MakeRef(fes, *this, fes->GetVSize());
|
||||
}
|
||||
|
||||
void
|
||||
ComplexLinearForm::Assemble()
|
||||
{
|
||||
lfr->SyncMemory(*this);
|
||||
lfi->SyncMemory(*this);
|
||||
lfr->Assemble();
|
||||
lfi->Assemble();
|
||||
if (conv == ComplexOperator::BLOCK_SYMMETRIC)
|
||||
{
|
||||
*lfi *= -1.0;
|
||||
}
|
||||
if (conv == ComplexOperator::BLOCK_SYMMETRIC) { *lfi *= -1.0; }
|
||||
lfr->SyncAliasMemory(*this);
|
||||
lfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
complex<double>
|
||||
ComplexLinearForm::operator()(const ComplexGridFunction &gf) const
|
||||
{
|
||||
double s = (conv == ComplexOperator::HERMITIAN)?1.0:-1.0;
|
||||
double s = (conv == ComplexOperator::HERMITIAN) ? 1.0 : -1.0;
|
||||
lfr->SyncMemory(*this);
|
||||
lfi->SyncMemory(*this);
|
||||
return complex<double>((*lfr)(gf.real()) - s * (*lfi)(gf.imag()),
|
||||
(*lfr)(gf.imag()) + s * (*lfi)(gf.real()));
|
||||
}
|
||||
|
||||
|
||||
bool SesquilinearForm::RealInteg()
|
||||
{
|
||||
int nint = blfr->GetFBFI()->Size() + blfr->GetDBFI()->Size() +
|
||||
@@ -341,34 +386,45 @@ SesquilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
Vector &X, Vector &B,
|
||||
int ci)
|
||||
{
|
||||
FiniteElementSpace * fes = blfr->FESpace();
|
||||
int vsize = fes->GetVSize();
|
||||
FiniteElementSpace *fes = blfr->FESpace();
|
||||
const int vsize = fes->GetVSize();
|
||||
|
||||
// Allocate temporary vectors
|
||||
Vector b_0(vsize); b_0 = 0.0;
|
||||
// Allocate temporary vector
|
||||
Vector b_0;
|
||||
b_0.UseDevice(true);
|
||||
b_0.SetSize(vsize);
|
||||
b_0 = 0.0;
|
||||
|
||||
// Extract the real and imaginary parts of the input vectors
|
||||
MFEM_ASSERT(x.Size() == 2 * vsize, "Input GridFunction of incorrect size!");
|
||||
Vector x_r(x.GetData(), vsize);
|
||||
Vector x_i(&(x.GetData())[vsize], vsize);
|
||||
x.Read();
|
||||
Vector x_r; x_r.MakeRef(x, 0, vsize);
|
||||
Vector x_i; x_i.MakeRef(x, vsize, vsize);
|
||||
|
||||
MFEM_ASSERT(b.Size() == 2 * vsize, "Input LinearForm of incorrect size!");
|
||||
Vector b_r(b.GetData(), vsize);
|
||||
Vector b_i(&(b.GetData())[vsize], vsize);
|
||||
b.Read();
|
||||
Vector b_r; b_r.MakeRef(b, 0, vsize);
|
||||
Vector b_i; b_i.MakeRef(b, vsize, vsize);
|
||||
|
||||
if (conv == ComplexOperator::BLOCK_SYMMETRIC) { b_i *= -1.0; }
|
||||
|
||||
int tvsize = fes->GetTrueVSize();
|
||||
const int tvsize = fes->GetTrueVSize();
|
||||
OperatorHandle A_r, A_i;
|
||||
|
||||
X.UseDevice(true);
|
||||
X.SetSize(2 * tvsize);
|
||||
B.SetSize(2 * tvsize);
|
||||
X = 0.0;
|
||||
|
||||
Vector X_0(tvsize), B_0(tvsize);
|
||||
Vector X_r(X.GetData(),tvsize);
|
||||
Vector X_i(&(X.GetData())[tvsize], tvsize);
|
||||
Vector B_r(B.GetData(), tvsize);
|
||||
Vector B_i(&(B.GetData())[tvsize], tvsize);
|
||||
B.UseDevice(true);
|
||||
B.SetSize(2 * tvsize);
|
||||
B = 0.0;
|
||||
|
||||
Vector X_r; X_r.MakeRef(X, 0, tvsize);
|
||||
Vector X_i; X_i.MakeRef(X, tvsize, tvsize);
|
||||
Vector B_r; B_r.MakeRef(B, 0, tvsize);
|
||||
Vector B_i; B_i.MakeRef(B, tvsize, tvsize);
|
||||
|
||||
Vector X_0, B_0;
|
||||
|
||||
if (RealInteg())
|
||||
{
|
||||
@@ -418,13 +474,18 @@ SesquilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
// conform with standard essential BC treatment
|
||||
if (A_i.Is<ConstrainedOperator>())
|
||||
{
|
||||
int n = ess_tdof_list.Size();
|
||||
for (int k = 0; k < n; k++)
|
||||
const int n = ess_tdof_list.Size();
|
||||
auto d_B_r = B_r.Write();
|
||||
auto d_B_i = B_i.Write();
|
||||
auto d_X_r = X_r.Read();
|
||||
auto d_X_i = X_i.Read();
|
||||
auto d_idx = ess_tdof_list.Read();
|
||||
MFEM_FORALL(i, n,
|
||||
{
|
||||
int j = ess_tdof_list[k];
|
||||
B_r(j) = X_r(j);
|
||||
B_i(j) = X_i(j);
|
||||
}
|
||||
const int j = d_idx[i];
|
||||
d_B_r[j] = d_X_r[j];
|
||||
d_B_i[j] = d_X_i[j];
|
||||
});
|
||||
A_i.As<ConstrainedOperator>()->SetDiagonalPolicy
|
||||
(mfem::Operator::DiagonalPolicy::DIAG_ZERO);
|
||||
}
|
||||
@@ -436,6 +497,16 @@ SesquilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
b_i *= -1.0;
|
||||
}
|
||||
|
||||
x_r.SyncAliasMemory(x);
|
||||
x_i.SyncAliasMemory(x);
|
||||
b_r.SyncAliasMemory(b);
|
||||
b_i.SyncAliasMemory(b);
|
||||
|
||||
X_r.SyncAliasMemory(X);
|
||||
X_i.SyncAliasMemory(X);
|
||||
B_r.SyncAliasMemory(B);
|
||||
B_i.SyncAliasMemory(B);
|
||||
|
||||
// A = A_r + i A_i
|
||||
A.Clear();
|
||||
if ( A_r.Type() == Operator::MFEM_SPARSEMAT ||
|
||||
@@ -528,29 +599,32 @@ void
|
||||
SesquilinearForm::RecoverFEMSolution(const Vector &X, const Vector &b,
|
||||
Vector &x)
|
||||
{
|
||||
FiniteElementSpace * fes = blfr->FESpace();
|
||||
FiniteElementSpace *fes = blfr->FESpace();
|
||||
|
||||
const SparseMatrix *P = fes->GetConformingProlongation();
|
||||
|
||||
int vsize = fes->GetVSize();
|
||||
int tvsize = X.Size() / 2;
|
||||
|
||||
Vector X_r(X.GetData(), tvsize);
|
||||
Vector X_i(&(X.GetData())[tvsize], tvsize);
|
||||
|
||||
Vector x_r(x.GetData(), vsize);
|
||||
Vector x_i(&(x.GetData())[vsize], vsize);
|
||||
|
||||
if (!P)
|
||||
{
|
||||
x = X;
|
||||
return;
|
||||
}
|
||||
else
|
||||
{
|
||||
// Apply conforming prolongation
|
||||
P->Mult(X_r, x_r);
|
||||
P->Mult(X_i, x_i);
|
||||
}
|
||||
|
||||
const int vsize = fes->GetVSize();
|
||||
const int tvsize = X.Size() / 2;
|
||||
|
||||
X.Read();
|
||||
Vector X_r; X_r.MakeRef(const_cast<Vector&>(X), 0, tvsize);
|
||||
Vector X_i; X_i.MakeRef(const_cast<Vector&>(X), tvsize, tvsize);
|
||||
|
||||
x.Write();
|
||||
Vector x_r; x_r.MakeRef(x, 0, vsize);
|
||||
Vector x_i; x_i.MakeRef(x, vsize, vsize);
|
||||
|
||||
// Apply conforming prolongation
|
||||
P->Mult(X_r, x_r);
|
||||
P->Mult(X_i, x_i);
|
||||
|
||||
x_r.SyncAliasMemory(x);
|
||||
x_i.SyncAliasMemory(x);
|
||||
}
|
||||
|
||||
void
|
||||
@@ -566,16 +640,21 @@ SesquilinearForm::Update(FiniteElementSpace *nfes)
|
||||
ParComplexGridFunction::ParComplexGridFunction(ParFiniteElementSpace *pfes)
|
||||
: Vector(2*(pfes->GetVSize()))
|
||||
{
|
||||
pgfr = new ParGridFunction(pfes, data);
|
||||
pgfi = new ParGridFunction(pfes, (data) ? &data[pfes->GetVSize()]:data);
|
||||
UseDevice(true);
|
||||
this->Vector::operator=(0.0);
|
||||
|
||||
pgfr = new ParGridFunction();
|
||||
pgfr->MakeRef(pfes, *this, 0);
|
||||
|
||||
pgfi = new ParGridFunction();
|
||||
pgfi->MakeRef(pfes, *this, pfes->GetVSize());
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::Update()
|
||||
{
|
||||
ParFiniteElementSpace * pfes = pgfr->ParFESpace();
|
||||
|
||||
int vsize = pfes->GetVSize();
|
||||
ParFiniteElementSpace *pfes = pgfr->ParFESpace();
|
||||
const int vsize = pfes->GetVSize();
|
||||
|
||||
const Operator *T = pfes->GetUpdateOperator();
|
||||
if (T)
|
||||
@@ -587,30 +666,34 @@ ParComplexGridFunction::Update()
|
||||
|
||||
// Our data array now contains old data as well as being the wrong size so
|
||||
// reallocate it.
|
||||
UseDevice(true);
|
||||
this->SetSize(2 * vsize);
|
||||
this->Vector::operator=(0.0);
|
||||
|
||||
// Create temporary vectors which point to the new data array
|
||||
Vector gf_r(data, vsize);
|
||||
Vector gf_i((data) ? &data[vsize] : data, vsize);
|
||||
Vector gf_r; gf_r.MakeRef(*this, 0, vsize);
|
||||
Vector gf_i; gf_i.MakeRef(*this, vsize, vsize);
|
||||
|
||||
// Copy the updated GridFunctions into the new data array
|
||||
gf_r = *pgfr;
|
||||
gf_i = *pgfi;
|
||||
gf_r = *pgfr; gf_r.SyncAliasMemory(*this);
|
||||
gf_i = *pgfi; gf_i.SyncAliasMemory(*this);
|
||||
|
||||
// Replace the individual data arrays with pointers into the new data
|
||||
// array
|
||||
pgfr->NewDataAndSize(data, vsize);
|
||||
pgfi->NewDataAndSize((data) ? &data[vsize] : data, vsize);
|
||||
pgfr->MakeRef(*this, 0, vsize);
|
||||
pgfi->MakeRef(*this, vsize, vsize);
|
||||
}
|
||||
else
|
||||
{
|
||||
// The existing data will not be transferred to the new GridFunctions so
|
||||
// delete it a allocate a new array
|
||||
// delete it and allocate a new array
|
||||
UseDevice(true);
|
||||
this->SetSize(2 * vsize);
|
||||
this->Vector::operator=(0.0);
|
||||
|
||||
// Point the individual GridFunctions to the new data array
|
||||
pgfr->NewDataAndSize(data, vsize);
|
||||
pgfi->NewDataAndSize((data) ? &data[vsize] : data, vsize);
|
||||
pgfr->MakeRef(*this, 0, vsize);
|
||||
pgfi->MakeRef(*this, vsize, vsize);
|
||||
|
||||
// These updates will only set the proper 'sequence' value within the
|
||||
// individual GridFunction objects because their sizes are already correct
|
||||
@@ -623,16 +706,24 @@ void
|
||||
ParComplexGridFunction::ProjectCoefficient(Coefficient &real_coeff,
|
||||
Coefficient &imag_coeff)
|
||||
{
|
||||
pgfr->SyncMemory(*this);
|
||||
pgfi->SyncMemory(*this);
|
||||
pgfr->ProjectCoefficient(real_coeff);
|
||||
pgfi->ProjectCoefficient(imag_coeff);
|
||||
pgfr->SyncAliasMemory(*this);
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::ProjectCoefficient(VectorCoefficient &real_vcoeff,
|
||||
VectorCoefficient &imag_vcoeff)
|
||||
{
|
||||
pgfr->SyncMemory(*this);
|
||||
pgfi->SyncMemory(*this);
|
||||
pgfr->ProjectCoefficient(real_vcoeff);
|
||||
pgfi->ProjectCoefficient(imag_vcoeff);
|
||||
pgfr->SyncAliasMemory(*this);
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
@@ -640,8 +731,12 @@ ParComplexGridFunction::ProjectBdrCoefficient(Coefficient &real_coeff,
|
||||
Coefficient &imag_coeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
pgfr->SyncMemory(*this);
|
||||
pgfi->SyncMemory(*this);
|
||||
pgfr->ProjectBdrCoefficient(real_coeff, attr);
|
||||
pgfi->ProjectBdrCoefficient(imag_coeff, attr);
|
||||
pgfr->SyncAliasMemory(*this);
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
@@ -651,8 +746,12 @@ ParComplexGridFunction::ProjectBdrCoefficientNormal(VectorCoefficient
|
||||
&imag_vcoeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
pgfr->SyncMemory(*this);
|
||||
pgfi->SyncMemory(*this);
|
||||
pgfr->ProjectBdrCoefficientNormal(real_vcoeff, attr);
|
||||
pgfi->ProjectBdrCoefficientNormal(imag_vcoeff, attr);
|
||||
pgfr->SyncAliasMemory(*this);
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
@@ -662,36 +761,51 @@ ParComplexGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient
|
||||
&imag_vcoeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
pgfr->SyncMemory(*this);
|
||||
pgfi->SyncMemory(*this);
|
||||
pgfr->ProjectBdrCoefficientTangent(real_vcoeff, attr);
|
||||
pgfi->ProjectBdrCoefficientTangent(imag_vcoeff, attr);
|
||||
pgfr->SyncAliasMemory(*this);
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::Distribute(const Vector *tv)
|
||||
{
|
||||
ParFiniteElementSpace * pfes = pgfr->ParFESpace();
|
||||
HYPRE_Int size = pfes->GetTrueVSize();
|
||||
ParFiniteElementSpace *pfes = pgfr->ParFESpace();
|
||||
const int tvsize = pfes->GetTrueVSize();
|
||||
|
||||
double * tvd = tv->GetData();
|
||||
Vector tvr(tvd, size);
|
||||
Vector tvi((tvd) ? &tvd[size] : tvd, size);
|
||||
tv->Read();
|
||||
Vector tvr; tvr.MakeRef(const_cast<Vector&>(*tv), 0, tvsize);
|
||||
Vector tvi; tvi.MakeRef(const_cast<Vector&>(*tv), tvsize, tvsize);
|
||||
|
||||
pgfr->SyncMemory(*this);
|
||||
pgfi->SyncMemory(*this);
|
||||
pgfr->Distribute(tvr);
|
||||
pgfi->Distribute(tvi);
|
||||
pgfr->SyncAliasMemory(*this);
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::ParallelProject(Vector &tv) const
|
||||
{
|
||||
ParFiniteElementSpace * pfes = pgfr->ParFESpace();
|
||||
HYPRE_Int size = pfes->GetTrueVSize();
|
||||
ParFiniteElementSpace *pfes = pgfr->ParFESpace();
|
||||
const int tvsize = pfes->GetTrueVSize();
|
||||
|
||||
double * tvd = tv.GetData();
|
||||
Vector tvr(tvd, size);
|
||||
Vector tvi((tvd) ? &tvd[size] : tvd, size);
|
||||
tv.Write();
|
||||
Vector tvr; tvr.MakeRef(tv, 0, tvsize);
|
||||
Vector tvi; tvi.MakeRef(tv, tvsize, tvsize);
|
||||
|
||||
pgfr->SyncMemory(*this);
|
||||
pgfi->SyncMemory(*this);
|
||||
pgfr->ParallelProject(tvr);
|
||||
pgfi->ParallelProject(tvi);
|
||||
pgfr->SyncAliasMemory(*this);
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
|
||||
tvr.SyncAliasMemory(tv);
|
||||
tvi.SyncAliasMemory(tv);
|
||||
}
|
||||
|
||||
|
||||
@@ -701,10 +815,16 @@ ParComplexLinearForm::ParComplexLinearForm(ParFiniteElementSpace *pfes,
|
||||
: Vector(2*(pfes->GetVSize())),
|
||||
conv(convention)
|
||||
{
|
||||
plfr = new ParLinearForm(pfes, data);
|
||||
plfi = new ParLinearForm(pfes, (data) ? &data[pfes->GetVSize()]:data);
|
||||
UseDevice(true);
|
||||
this->Vector::operator=(0.0);
|
||||
|
||||
HYPRE_Int * tdof_offsets_fes = pfes->GetTrueDofOffsets();
|
||||
plfr = new ParLinearForm();
|
||||
plfr->MakeRef(pfes, *this, 0);
|
||||
|
||||
plfi = new ParLinearForm();
|
||||
plfi->MakeRef(pfes, *this, pfes->GetVSize());
|
||||
|
||||
HYPRE_Int *tdof_offsets_fes = pfes->GetTrueDofOffsets();
|
||||
|
||||
int n = (HYPRE_AssumedPartitionCheck()) ? 2 : pfes->GetNRanks();
|
||||
tdof_offsets = new HYPRE_Int[n+1];
|
||||
@@ -724,12 +844,16 @@ ParComplexLinearForm::ParComplexLinearForm(ParFiniteElementSpace *pfes,
|
||||
: Vector(2*(pfes->GetVSize())),
|
||||
conv(convention)
|
||||
{
|
||||
plfr = new ParLinearForm(pfes, plf_r);
|
||||
plfr->SetData(data);
|
||||
plfi = new ParLinearForm(pfes, plf_i);
|
||||
plfi->SetData((data) ? &data[pfes->GetVSize()]:data);
|
||||
UseDevice(true);
|
||||
this->Vector::operator=(0.0);
|
||||
|
||||
HYPRE_Int * tdof_offsets_fes = pfes->GetTrueDofOffsets();
|
||||
plfr = new ParLinearForm(pfes, plf_r);
|
||||
plfi = new ParLinearForm(pfes, plf_i);
|
||||
|
||||
plfr->MakeRef(pfes, *this, 0);
|
||||
plfi->MakeRef(pfes, *this, pfes->GetVSize());
|
||||
|
||||
HYPRE_Int *tdof_offsets_fes = pfes->GetTrueDofOffsets();
|
||||
|
||||
int n = (HYPRE_AssumedPartitionCheck()) ? 2 : pfes->GetNRanks();
|
||||
tdof_offsets = new HYPRE_Int[n+1];
|
||||
@@ -792,58 +916,71 @@ ParComplexLinearForm::AddBdrFaceIntegrator(LinearFormIntegrator *lfi_real,
|
||||
void
|
||||
ParComplexLinearForm::Update(ParFiniteElementSpace *pf)
|
||||
{
|
||||
ParFiniteElementSpace *pfes = (pf!=NULL)?pf:plfr->ParFESpace();
|
||||
int vsize = pfes->GetVSize();
|
||||
SetSize(2 * vsize);
|
||||
ParFiniteElementSpace *pfes = (pf != NULL) ? pf : plfr->ParFESpace();
|
||||
|
||||
Vector vplfr(data, vsize);
|
||||
Vector vplfi((data) ? &data[vsize] : data, vsize);
|
||||
UseDevice(true);
|
||||
SetSize(2 * pfes->GetVSize());
|
||||
this->Vector::operator=(0.0);
|
||||
|
||||
plfr->Update(pfes, vplfr, 0);
|
||||
plfi->Update(pfes, vplfi, 0);
|
||||
plfr->MakeRef(pfes, *this, 0);
|
||||
plfi->MakeRef(pfes, *this, pfes->GetVSize());
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexLinearForm::Assemble()
|
||||
{
|
||||
plfr->SyncMemory(*this);
|
||||
plfi->SyncMemory(*this);
|
||||
plfr->Assemble();
|
||||
plfi->Assemble();
|
||||
if (conv == ComplexOperator::BLOCK_SYMMETRIC)
|
||||
{
|
||||
*plfi *= -1.0;
|
||||
}
|
||||
if (conv == ComplexOperator::BLOCK_SYMMETRIC) { *plfi *= -1.0; }
|
||||
plfr->SyncAliasMemory(*this);
|
||||
plfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexLinearForm::ParallelAssemble(Vector &tv)
|
||||
{
|
||||
HYPRE_Int size = plfr->ParFESpace()->GetTrueVSize();
|
||||
const int tvsize = plfr->ParFESpace()->GetTrueVSize();
|
||||
|
||||
double * tvd = tv.GetData();
|
||||
Vector tvr(tvd, size);
|
||||
Vector tvi((tvd) ? &tvd[size] : tvd, size);
|
||||
tv.Write();
|
||||
Vector tvr; tvr.MakeRef(tv, 0, tvsize);
|
||||
Vector tvi; tvi.MakeRef(tv, tvsize, tvsize);
|
||||
|
||||
plfr->SyncMemory(*this);
|
||||
plfi->SyncMemory(*this);
|
||||
plfr->ParallelAssemble(tvr);
|
||||
plfi->ParallelAssemble(tvi);
|
||||
plfr->SyncAliasMemory(*this);
|
||||
plfi->SyncAliasMemory(*this);
|
||||
|
||||
tvr.SyncAliasMemory(tv);
|
||||
tvi.SyncAliasMemory(tv);
|
||||
}
|
||||
|
||||
HypreParVector *
|
||||
ParComplexLinearForm::ParallelAssemble()
|
||||
{
|
||||
const ParFiniteElementSpace * pfes = plfr->ParFESpace();
|
||||
const ParFiniteElementSpace *pfes = plfr->ParFESpace();
|
||||
const int tvsize = pfes->GetTrueVSize();
|
||||
|
||||
HypreParVector * tv = new HypreParVector(pfes->GetComm(),
|
||||
2*(pfes->GlobalTrueVSize()),
|
||||
tdof_offsets);
|
||||
HypreParVector *tv = new HypreParVector(pfes->GetComm(),
|
||||
2*(pfes->GlobalTrueVSize()),
|
||||
tdof_offsets);
|
||||
|
||||
HYPRE_Int size = pfes->GetTrueVSize();
|
||||
|
||||
double * tvd = tv->GetData();
|
||||
Vector tvr(tvd, size);
|
||||
Vector tvi((tvd) ? &tvd[size] : tvd, size);
|
||||
tv->Write();
|
||||
Vector tvr; tvr.MakeRef(*tv, 0, tvsize);
|
||||
Vector tvi; tvi.MakeRef(*tv, tvsize, tvsize);
|
||||
|
||||
plfr->SyncMemory(*this);
|
||||
plfi->SyncMemory(*this);
|
||||
plfr->ParallelAssemble(tvr);
|
||||
plfi->ParallelAssemble(tvi);
|
||||
plfr->SyncAliasMemory(*this);
|
||||
plfi->SyncAliasMemory(*this);
|
||||
|
||||
tvr.SyncAliasMemory(*tv);
|
||||
tvi.SyncAliasMemory(*tv);
|
||||
|
||||
return tv;
|
||||
}
|
||||
@@ -851,13 +988,14 @@ ParComplexLinearForm::ParallelAssemble()
|
||||
complex<double>
|
||||
ParComplexLinearForm::operator()(const ParComplexGridFunction &gf) const
|
||||
{
|
||||
double s = (conv == ComplexOperator::HERMITIAN)?1.0:-1.0;
|
||||
plfr->SyncMemory(*this);
|
||||
plfi->SyncMemory(*this);
|
||||
double s = (conv == ComplexOperator::HERMITIAN) ? 1.0 : -1.0;
|
||||
return complex<double>((*plfr)(gf.real()) - s * (*plfi)(gf.imag()),
|
||||
(*plfr)(gf.imag()) + s * (*plfi)(gf.real()));
|
||||
}
|
||||
|
||||
|
||||
|
||||
bool ParSesquilinearForm::RealInteg()
|
||||
{
|
||||
int nint = pblfr->GetFBFI()->Size() + pblfr->GetDBFI()->Size() +
|
||||
@@ -964,7 +1102,6 @@ ParSesquilinearForm::ParallelAssemble()
|
||||
return new ComplexHypreParMatrix(pblfr->ParallelAssemble(),
|
||||
pblfi->ParallelAssemble(),
|
||||
true, true, conv);
|
||||
|
||||
}
|
||||
|
||||
void
|
||||
@@ -974,35 +1111,45 @@ ParSesquilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
Vector &X, Vector &B,
|
||||
int ci)
|
||||
{
|
||||
ParFiniteElementSpace * pfes = pblfr->ParFESpace();
|
||||
int vsize = pfes->GetVSize();
|
||||
ParFiniteElementSpace *pfes = pblfr->ParFESpace();
|
||||
const int vsize = pfes->GetVSize();
|
||||
|
||||
// Allocate temporary vectors
|
||||
Vector b_0(vsize); b_0 = 0.0;
|
||||
// Allocate temporary vector
|
||||
Vector b_0;
|
||||
b_0.UseDevice(true);
|
||||
b_0.SetSize(vsize);
|
||||
b_0 = 0.0;
|
||||
|
||||
// Extract the real and imaginary parts of the input vectors
|
||||
MFEM_ASSERT(x.Size() == 2 * vsize, "Input GridFunction of incorrect size!");
|
||||
Vector x_r(x.GetData(), vsize);
|
||||
Vector x_i(&(x.GetData())[vsize], vsize);
|
||||
x.Read();
|
||||
Vector x_r; x_r.MakeRef(x, 0, vsize);
|
||||
Vector x_i; x_i.MakeRef(x, vsize, vsize);
|
||||
|
||||
MFEM_ASSERT(b.Size() == 2 * vsize, "Input LinearForm of incorrect size!");
|
||||
Vector b_r(b.GetData(), vsize);
|
||||
Vector b_i(&(b.GetData())[vsize], vsize);
|
||||
b.Read();
|
||||
Vector b_r; b_r.MakeRef(b, 0, vsize);
|
||||
Vector b_i; b_i.MakeRef(b, vsize, vsize);
|
||||
|
||||
if (conv == ComplexOperator::BLOCK_SYMMETRIC) { b_i *= -1.0; }
|
||||
|
||||
int tvsize = pfes->GetTrueVSize();
|
||||
|
||||
const int tvsize = pfes->GetTrueVSize();
|
||||
OperatorHandle A_r, A_i;
|
||||
|
||||
X.UseDevice(true);
|
||||
X.SetSize(2 * tvsize);
|
||||
B.SetSize(2 * tvsize);
|
||||
X = 0.0;
|
||||
|
||||
Vector X_0(tvsize), B_0(tvsize);
|
||||
Vector X_r(X.GetData(),tvsize);
|
||||
Vector X_i(&(X.GetData())[tvsize], tvsize);
|
||||
Vector B_r(B.GetData(), tvsize);
|
||||
Vector B_i(&(B.GetData())[tvsize], tvsize);
|
||||
B.UseDevice(true);
|
||||
B.SetSize(2 * tvsize);
|
||||
B = 0.0;
|
||||
|
||||
Vector X_r; X_r.MakeRef(X, 0, tvsize);
|
||||
Vector X_i; X_i.MakeRef(X, tvsize, tvsize);
|
||||
Vector B_r; B_r.MakeRef(B, 0, tvsize);
|
||||
Vector B_i; B_i.MakeRef(B, tvsize, tvsize);
|
||||
|
||||
Vector X_0, B_0;
|
||||
|
||||
if (RealInteg())
|
||||
{
|
||||
@@ -1042,24 +1189,29 @@ ParSesquilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
|
||||
if (RealInteg() && ImagInteg())
|
||||
{
|
||||
int n = ess_tdof_list.Size();
|
||||
// Modify RHS to conform with standard essential BC treatment
|
||||
for (int k = 0; k < n; k++)
|
||||
const int n = ess_tdof_list.Size();
|
||||
auto d_B_r = B_r.Write();
|
||||
auto d_B_i = B_i.Write();
|
||||
auto d_X_r = X_r.Read();
|
||||
auto d_X_i = X_i.Read();
|
||||
auto d_idx = ess_tdof_list.Read();
|
||||
MFEM_FORALL(i, n,
|
||||
{
|
||||
int j=ess_tdof_list[k];
|
||||
B_r(j) = X_r(j);
|
||||
B_i(j) = X_i(j);
|
||||
}
|
||||
const int j = d_idx[i];
|
||||
d_B_r[j] = d_X_r[j];
|
||||
d_B_i[j] = d_X_i[j];
|
||||
});
|
||||
// Modify offdiagonal blocks (imaginary parts of the matrix) to conform
|
||||
// with standard essential BC treatment
|
||||
if ( A_i.Type() == Operator::Hypre_ParCSR )
|
||||
if (A_i.Type() == Operator::Hypre_ParCSR)
|
||||
{
|
||||
HypreParMatrix * Ah;
|
||||
A_i.Get(Ah);
|
||||
hypre_ParCSRMatrix *Aih = *Ah;
|
||||
for (int k = 0; k < n; k++)
|
||||
{
|
||||
int j = ess_tdof_list[k];
|
||||
const int j = ess_tdof_list[k];
|
||||
Aih->diag->data[Aih->diag->i[j]] = 0.0;
|
||||
}
|
||||
}
|
||||
@@ -1076,6 +1228,16 @@ ParSesquilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
b_i *= -1.0;
|
||||
}
|
||||
|
||||
x_r.SyncAliasMemory(x);
|
||||
x_i.SyncAliasMemory(x);
|
||||
b_r.SyncAliasMemory(b);
|
||||
b_i.SyncAliasMemory(b);
|
||||
|
||||
X_r.SyncAliasMemory(X);
|
||||
X_i.SyncAliasMemory(X);
|
||||
B_r.SyncAliasMemory(B);
|
||||
B_i.SyncAliasMemory(B);
|
||||
|
||||
// A = A_r + i A_i
|
||||
A.Clear();
|
||||
if ( A_r.Type() == Operator::Hypre_ParCSR ||
|
||||
@@ -1175,22 +1337,27 @@ void
|
||||
ParSesquilinearForm::RecoverFEMSolution(const Vector &X, const Vector &b,
|
||||
Vector &x)
|
||||
{
|
||||
ParFiniteElementSpace * pfes = pblfr->ParFESpace();
|
||||
ParFiniteElementSpace *pfes = pblfr->ParFESpace();
|
||||
|
||||
const Operator &P = *pfes->GetProlongationMatrix();
|
||||
|
||||
int vsize = pfes->GetVSize();
|
||||
int tvsize = X.Size() / 2;
|
||||
const int vsize = pfes->GetVSize();
|
||||
const int tvsize = X.Size() / 2;
|
||||
|
||||
Vector X_r(X.GetData(), tvsize);
|
||||
Vector X_i(&(X.GetData())[tvsize], tvsize);
|
||||
X.Read();
|
||||
Vector X_r; X_r.MakeRef(const_cast<Vector&>(X), 0, tvsize);
|
||||
Vector X_i; X_i.MakeRef(const_cast<Vector&>(X), tvsize, tvsize);
|
||||
|
||||
Vector x_r(x.GetData(), vsize);
|
||||
Vector x_i(&(x.GetData())[vsize], vsize);
|
||||
x.Write();
|
||||
Vector x_r; x_r.MakeRef(x, 0, vsize);
|
||||
Vector x_i; x_i.MakeRef(x, vsize, vsize);
|
||||
|
||||
// Apply conforming prolongation
|
||||
P.Mult(X_r, x_r);
|
||||
P.Mult(X_i, x_i);
|
||||
|
||||
x_r.SyncAliasMemory(x);
|
||||
x_i.SyncAliasMemory(x);
|
||||
}
|
||||
|
||||
void
|
||||
|
||||
+8
-8
@@ -99,8 +99,8 @@ public:
|
||||
ComplexOperator::Convention
|
||||
convention = ComplexOperator::HERMITIAN);
|
||||
|
||||
/** @brief Create a ComplexLinearForm on the FiniteElementSpace @a f, using
|
||||
the same integrators as the LinearForms @a lfr (real) and @a lfi (imag) .
|
||||
/** @brief Create a ComplexLinearForm on the FiniteElementSpace @a fes, using
|
||||
the same integrators as the LinearForms @a lf_r (real) and @a lf_i (imag).
|
||||
|
||||
The pointer @a fes is not owned by the newly constructed object.
|
||||
|
||||
@@ -195,8 +195,8 @@ private:
|
||||
BilinearForm *blfr;
|
||||
BilinearForm *blfi;
|
||||
|
||||
/* These methods check if the real/imag parts of the sesqulinear form are not
|
||||
empty */
|
||||
/* These methods check if the real/imag parts of the sesquilinear form are
|
||||
not empty */
|
||||
bool RealInteg();
|
||||
bool ImagInteg();
|
||||
|
||||
@@ -204,7 +204,7 @@ public:
|
||||
SesquilinearForm(FiniteElementSpace *fes,
|
||||
ComplexOperator::Convention
|
||||
convention = ComplexOperator::HERMITIAN);
|
||||
/** @brief Create a SesquilinearForm on the FiniteElementSpace @a f, using
|
||||
/** @brief Create a SesquilinearForm on the FiniteElementSpace @a fes, using
|
||||
the same integrators as the BilinearForms @a bfr and @a bfi .
|
||||
|
||||
The pointer @a fes is not owned by the newly constructed object.
|
||||
@@ -324,7 +324,7 @@ protected:
|
||||
public:
|
||||
|
||||
/* @brief Construct a ParComplexGridFunction associated with the
|
||||
ParFiniteElementSpace @a *f. */
|
||||
ParFiniteElementSpace @a *pf. */
|
||||
ParComplexGridFunction(ParFiniteElementSpace *pf);
|
||||
|
||||
void Update();
|
||||
@@ -416,8 +416,8 @@ public:
|
||||
convention = ComplexOperator::HERMITIAN);
|
||||
|
||||
/** @brief Create a ParComplexLinearForm on the ParFiniteElementSpace @a pf,
|
||||
using the same integrators as the LinearForms @a plfr (real) and @a plfi
|
||||
(imag) .
|
||||
using the same integrators as the LinearForms @a plf_r (real) and
|
||||
@a plf_i (imag).
|
||||
|
||||
The pointer @a fes is not owned by the newly constructed object.
|
||||
|
||||
|
||||
+1
-2
@@ -199,8 +199,7 @@ void GridFunction::MakeRef(FiniteElementSpace *f, Vector &v, int v_offset)
|
||||
if (f != fes) { Destroy(); }
|
||||
fes = f;
|
||||
v.UseDevice(true);
|
||||
NewMemoryAndSize(Memory<double>(v.GetMemory(), v_offset, fes->GetVSize()),
|
||||
fes->GetVSize(), true);
|
||||
this->Vector::MakeRef(v, v_offset, fes->GetVSize());
|
||||
sequence = fes->GetSequence();
|
||||
}
|
||||
|
||||
|
||||
@@ -204,6 +204,14 @@ void LinearForm::Update(FiniteElementSpace *f, Vector &v, int v_offset)
|
||||
ResetDeltaLocations();
|
||||
}
|
||||
|
||||
void LinearForm::MakeRef(FiniteElementSpace *f, Vector &v, int v_offset)
|
||||
{
|
||||
MFEM_ASSERT(v.Size() >= v_offset + f->GetVSize(), "");
|
||||
fes = f;
|
||||
v.UseDevice(true);
|
||||
this->Vector::MakeRef(v, v_offset, fes->GetVSize());
|
||||
}
|
||||
|
||||
void LinearForm::AssembleDelta()
|
||||
{
|
||||
if (dlfi_delta.Size() == 0) { return; }
|
||||
|
||||
+10
-1
@@ -26,7 +26,7 @@ protected:
|
||||
/// FE space on which the LinearForm lives. Not owned.
|
||||
FiniteElementSpace *fes;
|
||||
|
||||
/** @brief Indicates the LinerFormIntegrator%s stored in #dlfi, #dlfi_delta,
|
||||
/** @brief Indicates the LinearFormIntegrator%s stored in #dlfi, #dlfi_delta,
|
||||
#blfi, and #flfi are owned by another LinearForm. */
|
||||
int extern_lfs;
|
||||
|
||||
@@ -175,6 +175,15 @@ public:
|
||||
@note This method does not perform assembly. */
|
||||
void Update(FiniteElementSpace *f, Vector &v, int v_offset);
|
||||
|
||||
/** @brief Make the LinearForm reference external data on a new
|
||||
FiniteElementSpace. */
|
||||
/** This method changes the FiniteElementSpace associated with the LinearForm
|
||||
@a *f and sets the data of the Vector @a v (plus the @a v_offset)
|
||||
as external data in the LinearForm.
|
||||
@note This version of the method will also perform bounds checks when
|
||||
the build option MFEM_DEBUG is enabled. */
|
||||
virtual void MakeRef(FiniteElementSpace *f, Vector &v, int v_offset);
|
||||
|
||||
/// Return the action of the LinearForm as a linear mapping.
|
||||
/** Linear forms are linear functionals which map GridFunctions to
|
||||
the real numbers. This method performs this mapping which in
|
||||
|
||||
+12
-1
@@ -21,7 +21,6 @@ namespace mfem
|
||||
void ParLinearForm::Update(ParFiniteElementSpace *pf)
|
||||
{
|
||||
if (pf) { pfes = pf; }
|
||||
|
||||
LinearForm::Update(pfes);
|
||||
}
|
||||
|
||||
@@ -31,6 +30,18 @@ void ParLinearForm::Update(ParFiniteElementSpace *pf, Vector &v, int v_offset)
|
||||
LinearForm::Update(pf,v,v_offset);
|
||||
}
|
||||
|
||||
void ParLinearForm::MakeRef(FiniteElementSpace *f, Vector &v, int v_offset)
|
||||
{
|
||||
LinearForm::MakeRef(f, v, v_offset);
|
||||
pfes = dynamic_cast<ParFiniteElementSpace*>(f);
|
||||
}
|
||||
|
||||
void ParLinearForm::MakeRef(ParFiniteElementSpace *pf, Vector &v, int v_offset)
|
||||
{
|
||||
LinearForm::MakeRef(pf, v, v_offset);
|
||||
pfes = pf;
|
||||
}
|
||||
|
||||
void ParLinearForm::ParallelAssemble(Vector &tv)
|
||||
{
|
||||
const Operator* prolong = pfes->GetProlongationMatrix();
|
||||
|
||||
@@ -92,6 +92,25 @@ public:
|
||||
@note This method does not perform assembly. */
|
||||
void Update(ParFiniteElementSpace *pf, Vector &v, int v_offset);
|
||||
|
||||
|
||||
/** @brief Make the ParLinearForm reference external data on a new
|
||||
FiniteElementSpace. */
|
||||
/** This method changes the FiniteElementSpace associated with the ParLinearForm
|
||||
to @a *f and sets the data of the Vector @a v (plus the @a v_offset) as external
|
||||
data in the ParLinearForm.
|
||||
@note This version of the method will also perform bounds checks when
|
||||
the build option MFEM_DEBUG is enabled. */
|
||||
virtual void MakeRef(FiniteElementSpace *f, Vector &v, int v_offset);
|
||||
|
||||
/** @brief Make the ParLinearForm reference external data on a new
|
||||
ParFiniteElementSpace. */
|
||||
/** This method changes the ParFiniteElementSpace associated with the ParLinearForm
|
||||
to @a *pf and sets the data of the Vector @a v (plus the @a v_offset) as external
|
||||
data in the ParLinearForm.
|
||||
@note This version of the method will also perform bounds checks when
|
||||
the build option MFEM_DEBUG is enabled. */
|
||||
void MakeRef(ParFiniteElementSpace *pf, Vector &v, int v_offset);
|
||||
|
||||
/// Assemble the vector on the true dofs, i.e. P^t v.
|
||||
void ParallelAssemble(Vector &tv);
|
||||
|
||||
|
||||
+54
-22
@@ -26,10 +26,10 @@ ComplexOperator::ComplexOperator(Operator * Op_Real, Operator * Op_Imag,
|
||||
, ownReal_(ownReal)
|
||||
, ownImag_(ownImag)
|
||||
, convention_(convention)
|
||||
, x_r_(NULL, width / 2)
|
||||
, x_i_(NULL, width / 2)
|
||||
, y_r_(NULL, height / 2)
|
||||
, y_i_(NULL, height / 2)
|
||||
, x_r_()
|
||||
, x_i_()
|
||||
, y_r_()
|
||||
, y_i_()
|
||||
, u_(NULL)
|
||||
, v_(NULL)
|
||||
{}
|
||||
@@ -68,14 +68,26 @@ const Operator & ComplexOperator::imag() const
|
||||
|
||||
void ComplexOperator::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
double * x_data = x.GetData();
|
||||
x_r_.SetData(x_data);
|
||||
x_i_.SetData(&x_data[width / 2]);
|
||||
x.Read();
|
||||
y.UseDevice(true); y = 0.0;
|
||||
|
||||
y_r_.SetData(&y[0]);
|
||||
y_i_.SetData(&y[height / 2]);
|
||||
x_r_.MakeRef(const_cast<Vector&>(x), 0, width/2);
|
||||
x_i_.MakeRef(const_cast<Vector&>(x), width/2, width/2);
|
||||
|
||||
y_r_.MakeRef(y, 0, height/2);
|
||||
y_i_.MakeRef(y, height/2, height/2);
|
||||
|
||||
this->Mult(x_r_, x_i_, y_r_, y_i_);
|
||||
|
||||
y_r_.SyncAliasMemory(y);
|
||||
y_i_.SyncAliasMemory(y);
|
||||
|
||||
// Destroy alias vectors to prevent dangling aliases when the base vectors
|
||||
// are deleted
|
||||
x_r_.Destroy();
|
||||
x_i_.Destroy();
|
||||
y_r_.Destroy();
|
||||
y_i_.Destroy();
|
||||
}
|
||||
|
||||
void ComplexOperator::Mult(const Vector &x_r, const Vector &x_i,
|
||||
@@ -91,31 +103,47 @@ void ComplexOperator::Mult(const Vector &x_r, const Vector &x_i,
|
||||
y_r = 0.0;
|
||||
y_i = 0.0;
|
||||
}
|
||||
|
||||
if (Op_Imag_)
|
||||
{
|
||||
if (!v_) { v_ = new Vector(Op_Imag_->Height()); }
|
||||
if (!v_) { v_ = new Vector(); }
|
||||
v_->UseDevice(true);
|
||||
v_->SetSize(Op_Imag_->Height());
|
||||
|
||||
Op_Imag_->Mult(x_i, *v_);
|
||||
y_r_ -= *v_;
|
||||
y_r.Add(-1.0, *v_);
|
||||
Op_Imag_->Mult(x_r, *v_);
|
||||
y_i_ += *v_;
|
||||
y_i.Add(1.0, *v_);
|
||||
}
|
||||
|
||||
if (convention_ == BLOCK_SYMMETRIC)
|
||||
{
|
||||
y_i_ *= -1.0;
|
||||
y_i *= -1.0;
|
||||
}
|
||||
}
|
||||
|
||||
void ComplexOperator::MultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
double * x_data = x.GetData();
|
||||
y_r_.SetData(x_data);
|
||||
y_i_.SetData(&x_data[height / 2]);
|
||||
x.Read();
|
||||
y.UseDevice(true); y = 0.0;
|
||||
|
||||
x_r_.SetData(&y[0]);
|
||||
x_i_.SetData(&y[width / 2]);
|
||||
x_r_.MakeRef(const_cast<Vector&>(x), 0, height/2);
|
||||
x_i_.MakeRef(const_cast<Vector&>(x), height/2, height/2);
|
||||
|
||||
this->MultTranspose(y_r_, y_i_, x_r_, x_i_);
|
||||
y_r_.MakeRef(y, 0, width/2);
|
||||
y_i_.MakeRef(y, width/2, width/2);
|
||||
|
||||
this->MultTranspose(x_r_, x_i_, y_r_, y_i_);
|
||||
|
||||
y_r_.SyncAliasMemory(y);
|
||||
y_i_.SyncAliasMemory(y);
|
||||
|
||||
// Destroy alias vectors to prevent dangling aliases when the base vectors
|
||||
// are deleted
|
||||
x_r_.Destroy();
|
||||
x_i_.Destroy();
|
||||
y_r_.Destroy();
|
||||
y_i_.Destroy();
|
||||
}
|
||||
|
||||
void ComplexOperator::MultTranspose(const Vector &x_r, const Vector &x_i,
|
||||
@@ -136,13 +164,17 @@ void ComplexOperator::MultTranspose(const Vector &x_r, const Vector &x_i,
|
||||
y_r = 0.0;
|
||||
y_i = 0.0;
|
||||
}
|
||||
|
||||
if (Op_Imag_)
|
||||
{
|
||||
if (!u_) { u_ = new Vector(Op_Imag_->Width()); }
|
||||
if (!u_) { u_ = new Vector(); }
|
||||
u_->UseDevice(true);
|
||||
u_->SetSize(Op_Imag_->Width());
|
||||
|
||||
Op_Imag_->MultTranspose(x_i, *u_);
|
||||
y_r_.Add(convention_ == BLOCK_SYMMETRIC ? -1.0 : 1.0, *u_);
|
||||
y_r.Add(convention_ == BLOCK_SYMMETRIC ? -1.0 : 1.0, *u_);
|
||||
Op_Imag_->MultTranspose(x_r, *u_);
|
||||
y_i_ -= *u_;
|
||||
y_i.Add(-1.0, *u_);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
+18
-4
@@ -134,7 +134,7 @@ OperatorJacobiSmoother::OperatorJacobiSmoother(const BilinearForm &a,
|
||||
|
||||
OperatorJacobiSmoother::OperatorJacobiSmoother(const Vector &d,
|
||||
const Array<int> &ess_tdofs,
|
||||
const double dmpng)
|
||||
const double dmpng, const bool inverse)
|
||||
:
|
||||
Solver(d.Size()),
|
||||
N(d.Size()),
|
||||
@@ -143,16 +143,30 @@ OperatorJacobiSmoother::OperatorJacobiSmoother(const Vector &d,
|
||||
ess_tdof_list(ess_tdofs),
|
||||
residual(N)
|
||||
{
|
||||
Setup(d);
|
||||
Setup(d, inverse);
|
||||
}
|
||||
|
||||
void OperatorJacobiSmoother::Setup(const Vector &diag)
|
||||
void OperatorJacobiSmoother::Setup(const Vector &diag, const bool inverse)
|
||||
{
|
||||
residual.UseDevice(true);
|
||||
const double delta = damping;
|
||||
auto D = diag.Read();
|
||||
auto DI = dinv.Write();
|
||||
MFEM_FORALL(i, N, DI[i] = delta / D[i]; );
|
||||
if (inverse)
|
||||
{
|
||||
if (delta > 0.0)
|
||||
{
|
||||
MFEM_FORALL(i, N, DI[i] = delta * D[i]; );
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_FORALL(i, N, DI[i] = D[i]; );
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_FORALL(i, N, DI[i] = delta / D[i]; );
|
||||
}
|
||||
auto I = ess_tdof_list.Read();
|
||||
MFEM_FORALL(i, ess_tdof_list.Size(), DI[I[i]] = delta; );
|
||||
}
|
||||
|
||||
+3
-2
@@ -125,13 +125,14 @@ public:
|
||||
the matrix-free setting. */
|
||||
OperatorJacobiSmoother(const Vector &d,
|
||||
const Array<int> &ess_tdof_list,
|
||||
const double damping=1.0);
|
||||
const double damping=1.0,
|
||||
const bool inverse=false);
|
||||
~OperatorJacobiSmoother() {}
|
||||
|
||||
void Mult(const Vector &x, Vector &y) const;
|
||||
void MultTranspose(const Vector &x, Vector &y) const { Mult(x, y); }
|
||||
void SetOperator(const Operator &op) { oper = &op; }
|
||||
void Setup(const Vector &diag);
|
||||
void Setup(const Vector &diag, const bool inverse=false);
|
||||
|
||||
private:
|
||||
const int N;
|
||||
|
||||
Reference in New Issue
Block a user