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# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
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# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
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# LICENSE and NOTICE for details. LLNL-CODE-806117.
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#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
---
|
||||
name: Sanitizer Config
|
||||
description: Sets up environment variables for MFEM sanitizer workflow
|
||||
|
||||
inputs:
|
||||
DEBUG:
|
||||
description: If true, use intermediate caches to speed up the workflow
|
||||
by reusing previous builds.
|
||||
default: false
|
||||
|
||||
REPOSITORY:
|
||||
description: Repository to checkout
|
||||
default: mfem/mfem
|
||||
|
||||
BRANCH:
|
||||
description: Branch to checkout
|
||||
default: ubsan
|
||||
|
||||
CLANG_VER:
|
||||
description: CLANG version to use
|
||||
default: 18
|
||||
|
||||
# https://github.com/llvm/llvm-project/releases
|
||||
LLVM_VER:
|
||||
description: LLVM version to use
|
||||
default: 19.1.7
|
||||
|
||||
# https://github.com/hypre-space/hypre/releases
|
||||
HYPRE_VER:
|
||||
description: HYPRE version to use
|
||||
default: 2.19.0
|
||||
|
||||
METIS_VER:
|
||||
description: METIS version to use
|
||||
default: 4.0.3
|
||||
|
||||
CTEST:
|
||||
description: CTest command to use
|
||||
default: ctest -j --test-load $(nproc)
|
||||
--schedule-random
|
||||
--stop-on-failure --output-on-failure
|
||||
--test-dir
|
||||
|
||||
# https://clang.llvm.org/docs/AddressSanitizer.html
|
||||
ASAN_OPTIONS:
|
||||
default: detect_leaks=1,
|
||||
strict_init_order=1,
|
||||
strict_string_checks=1,
|
||||
check_initialization_order=1,
|
||||
detect_stack_use_after_return=1
|
||||
ASAN_CXXFLAGS:
|
||||
default: -fsanitize=address
|
||||
-fsanitize-address-use-after-scope
|
||||
ASAN_LDFLAGS:
|
||||
default: -fsanitize=address
|
||||
|
||||
# https://clang.llvm.org/docs/UndefinedBehaviorSanitizer.html
|
||||
UBSAN_OPTIONS:
|
||||
default: halt_on_error=1, print_stacktrace=1
|
||||
UBSAN_CXXFLAGS:
|
||||
default: -fsanitize=undefined
|
||||
UBSAN_LDFLAGS:
|
||||
default: -fsanitize=undefined
|
||||
|
||||
# https://clang.llvm.org/docs/MemorySanitizer.html
|
||||
MSAN_OPTIONS:
|
||||
default: "poison_in_dtor=1"
|
||||
MSAN_CXXFLAGS:
|
||||
default: -fsanitize=memory
|
||||
-fsanitize-memory-track-origins
|
||||
-fsanitize-memory-use-after-dtor
|
||||
MSAN_LDFLAGS:
|
||||
default: -fsanitize=memory
|
||||
|
||||
LSAN_DIR:
|
||||
description: LSAN suppression directory
|
||||
default: lsan
|
||||
|
||||
LSAN_FILE:
|
||||
description: LSAN suppression file
|
||||
default: lsan.supp
|
||||
|
||||
NO_FLAGS:
|
||||
description: If true, do not set any CXXFLAGS or LDFLAGS.
|
||||
default: false
|
||||
|
||||
runs:
|
||||
using: 'composite'
|
||||
steps:
|
||||
- name: Env (Inputs)
|
||||
run: |
|
||||
echo DEBUG=${{inputs.DEBUG}} >> $GITHUB_ENV
|
||||
echo REPOSITORY=${{inputs.REPOSITORY}} >> $GITHUB_ENV
|
||||
echo BRANCH=${{inputs.BRANCH}} >> $GITHUB_ENV
|
||||
echo CLANG_VER=${{inputs.CLANG_VER}} >> $GITHUB_ENV
|
||||
echo LLVM_VER=${{inputs.LLVM_VER}} >> $GITHUB_ENV
|
||||
echo HYPRE_VER=${{inputs.HYPRE_VER}} >> $GITHUB_ENV
|
||||
echo METIS_VER=${{inputs.METIS_VER}} >> $GITHUB_ENV
|
||||
echo CTEST=${{inputs.CTEST}} >> $GITHUB_ENV
|
||||
echo ASAN_OPTIONS=${{inputs.ASAN_OPTIONS}} >> $GITHUB_ENV
|
||||
echo UBSAN_OPTIONS=${{inputs.UBSAN_OPTIONS}} >> $GITHUB_ENV
|
||||
echo MSAN_OPTIONS=${{inputs.MSAN_OPTIONS}} >> $GITHUB_ENV
|
||||
echo LSAN_DIR=${{inputs.LSAN_DIR}} >> $GITHUB_ENV
|
||||
echo LSAN_FILE=${{inputs.LSAN_FILE}} >> $GITHUB_ENV
|
||||
echo ASAN_CXXFLAGS=${{inputs.ASAN_CXXFLAGS}} >> $GITHUB_ENV
|
||||
echo ASAN_LDFLAGS=${{inputs.ASAN_LDFLAGS}} >> $GITHUB_ENV
|
||||
echo UBSAN_CXXFLAGS=${{inputs.UBSAN_CXXFLAGS}} >> $GITHUB_ENV
|
||||
echo UBSAN_LDFLAGS=${{inputs.UBSAN_LDFLAGS}} >> $GITHUB_ENV
|
||||
echo MSAN_CXXFLAGS=${{inputs.MSAN_CXXFLAGS}} >> $GITHUB_ENV
|
||||
echo MSAN_LDFLAGS=${{inputs.MSAN_LDFLAGS}} >> $GITHUB_ENV
|
||||
shell: bash
|
||||
|
||||
- name: Env (dir)
|
||||
run: |
|
||||
echo LLVM_DIR=${{github.workspace}}/llvm >> $GITHUB_ENV
|
||||
echo HYPRE_DIR=hypre-${{inputs.HYPRE_VER}} >> $GITHUB_ENV
|
||||
echo METIS_DIR=metis-${{inputs.METIS_VER}} >> $GITHUB_ENV
|
||||
shell: bash
|
||||
|
||||
- name: Env (bis)
|
||||
run: |
|
||||
echo CC=clang-${{inputs.CLANG_VER}} >> $GITHUB_ENV
|
||||
echo CXX=clang++-${{inputs.CLANG_VER}} >> $GITHUB_ENV
|
||||
echo LLVM_INC=${{env.LLVM_DIR}}/include/c++/v1 >> $GITHUB_ENV
|
||||
echo LLVM_LIB=${{env.LLVM_DIR}}/lib >> $GITHUB_ENV
|
||||
echo HYPRE_TGZ=v${{inputs.HYPRE_VER}}.tar.gz >> $GITHUB_ENV
|
||||
echo METIS_TGZ=metis-${{inputs.METIS_VER}}.tar.gz >> $GITHUB_ENV
|
||||
LSAN_SUPPRESSIONS="${{github.workspace}}/${{inputs.LSAN_DIR}}/${{inputs.LSAN_FILE}}"
|
||||
echo "LSAN_OPTIONS=suppressions=$LSAN_SUPPRESSIONS" >> $GITHUB_ENV
|
||||
shell: bash
|
||||
|
||||
- name: Env (ter)
|
||||
if: ${{ inputs.NO_FLAGS != 'true' }}
|
||||
run: |
|
||||
echo LLVM_CXXFLAGS=-stdlib=libc++ -I${{env.LLVM_INC}} -Isystem${{env.LLVM_INC}} >> $GITHUB_ENV
|
||||
echo LLVM_LDFLAGS=-L${{env.LLVM_LIB}} -lc++abi -Wl,-rpath,${{env.LLVM_LIB}} >> $GITHUB_ENV
|
||||
shell: bash
|
||||
|
||||
- name: Env (quater)
|
||||
if: ${{ inputs.NO_FLAGS != 'true' }}
|
||||
run: |
|
||||
echo CXXFLAGS=${{env.LLVM_CXXFLAGS}} >> $GITHUB_ENV
|
||||
echo LDFLAGS=${{env.LLVM_LDFLAGS}} >> $GITHUB_ENV
|
||||
shell: bash
|
||||
@@ -0,0 +1,91 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
---
|
||||
name: 'MFEM Compilation'
|
||||
description: 'MFEM Compilation'
|
||||
|
||||
inputs:
|
||||
par:
|
||||
description: 'Whether to build for parallel (true/false)'
|
||||
default: false
|
||||
sanitizer:
|
||||
description: 'Sanitizer to use (asan, msan, ubsan)'
|
||||
default: asan
|
||||
|
||||
runs:
|
||||
using: 'composite'
|
||||
steps:
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
|
||||
- uses: actions/cache@v4
|
||||
if: ${{env.DEBUG == 'true'}}
|
||||
id: debug
|
||||
with:
|
||||
path: mfem/build
|
||||
key: build-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
|
||||
- uses: ./.github/actions/sanitize/setup
|
||||
if: ${{steps.debug.outputs.cache-hit != 'true'}}
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
sanitizer: ${{inputs.sanitizer}}
|
||||
|
||||
- name: Build with ASAN
|
||||
if: inputs.sanitizer == 'asan'
|
||||
run: echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.ASAN_CXXFLAGS}} >> $GITHUB_ENV
|
||||
shell: bash
|
||||
|
||||
- name: Build with MSAN
|
||||
if: inputs.sanitizer == 'msan'
|
||||
run: echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.MSAN_CXXFLAGS}} >> $GITHUB_ENV
|
||||
shell: bash
|
||||
|
||||
- name: Build with UBSAN
|
||||
if: inputs.sanitizer == 'ubsan'
|
||||
run: echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.UBSAN_CXXFLAGS}} >> $GITHUB_ENV
|
||||
shell: bash
|
||||
|
||||
- uses: mfem/github-actions/build-mfem@v2.5
|
||||
if: ${{steps.debug.outputs.cache-hit != 'true'}}
|
||||
env:
|
||||
CXXFLAGS: ${{env.CXXFLAGS}}
|
||||
LDFLAGS: ${{env.LDFLAGS}}
|
||||
with:
|
||||
mpi: ${{inputs.par == 'false' && 'seq' || 'par'}}
|
||||
mfem-dir: mfem
|
||||
os: ${{runner.os}}
|
||||
library-only: true
|
||||
build-system: cmake
|
||||
hypre-dir: ${{env.HYPRE_DIR}}
|
||||
metis-dir: ${{env.METIS_DIR}}
|
||||
config-options: >-
|
||||
-GNinja
|
||||
-DMPICXX=${{env.CXX}}
|
||||
-DCMAKE_CXX_STANDARD=17
|
||||
-DMFEM_USE_MEMALLOC=OFF
|
||||
-DCMAKE_BUILD_TYPE=Release
|
||||
-DCMAKE_VERBOSE_MAKEFILE=ON
|
||||
-DCMAKE_CXX_COMPILER=${{env.CXX}}
|
||||
-DCMAKE_CXX_FLAGS_RELEASE='-g -O1 -fno-omit-frame-pointer'
|
||||
|
||||
- name: Delete object files
|
||||
if: ${{steps.debug.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build
|
||||
run: find . -type f -name '*.o' -delete
|
||||
shell: bash
|
||||
|
||||
- uses: actions/upload-artifact@v4
|
||||
with:
|
||||
name: build-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
path: mfem/build
|
||||
if-no-files-found: error
|
||||
retention-days: 1
|
||||
overwrite: false
|
||||
@@ -0,0 +1,33 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
---
|
||||
name: 'Install MPI'
|
||||
description: 'Installs MPI and set up its environment variables'
|
||||
|
||||
runs:
|
||||
using: 'composite'
|
||||
steps:
|
||||
- name: Install
|
||||
run: sudo apt-get install openmpi-bin libopenmpi-dev
|
||||
shell: bash
|
||||
|
||||
- name: Env
|
||||
run: |
|
||||
echo PRTE_MCA_rmaps_default_mapping_policy=:oversubscribe >> $GITHUB_ENV
|
||||
echo MPI_INC=$(mpicxx --showme:compile) >> $GITHUB_ENV
|
||||
echo MPI_LIB=$(mpicxx --showme:link) >> $GITHUB_ENV
|
||||
shell: bash
|
||||
|
||||
- name: Env (bis)
|
||||
run: |
|
||||
echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.MPI_INC}} >> $GITHUB_ENV
|
||||
echo LDFLAGS=${{env.LDFLAGS}} ${{env.MPI_LIB}} >> $GITHUB_ENV
|
||||
shell: bash
|
||||
@@ -0,0 +1,71 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
---
|
||||
name: 'Restore state'
|
||||
description: 'Restore state to be able to run checks, tests'
|
||||
|
||||
inputs:
|
||||
par:
|
||||
description: 'Whether to build for parallel (true/false)'
|
||||
default: false
|
||||
sanitizer:
|
||||
description: 'Sanitizer to use (asan, msan, ubsan)'
|
||||
default: asan
|
||||
cache-path:
|
||||
description: 'path to what needs to be restored'
|
||||
default: none
|
||||
cache-skip:
|
||||
description: 'Skip cache restoration'
|
||||
default: false
|
||||
|
||||
outputs:
|
||||
cache-hit:
|
||||
description: 'Output from a specific step'
|
||||
value: ${{steps.debug.outputs.cache-hit}}
|
||||
|
||||
runs:
|
||||
using: 'composite'
|
||||
steps:
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
|
||||
- uses: actions/cache@v4
|
||||
if: ${{env.DEBUG == 'true' && inputs.cache-skip != 'true'}}
|
||||
id: debug
|
||||
with:
|
||||
path: ${{inputs.cache-path}}
|
||||
key: ${{github.job}}-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
|
||||
- uses: ./.github/actions/sanitize/setup
|
||||
if: ${{steps.debug.outputs.cache-hit != 'true'}}
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
sanitizer: ${{inputs.sanitizer}}
|
||||
|
||||
- uses: actions/download-artifact@v4
|
||||
with:
|
||||
name: build-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
path: mfem/build
|
||||
|
||||
- name: Ninja Patch
|
||||
working-directory: mfem/build
|
||||
run: |
|
||||
sed -i -e 's/CXX_STATIC_LIBRARY_LINKER__mfem_Release.*/CUSTOM_COMMAND/' build.ninja
|
||||
sed -i -e '/build tests\/unit\/all:/ s/tests\/unit\/[^ ]*unit_tests[^ ]*//g' build.ninja
|
||||
sed -i -e '/^add_test(\[=\[\(unit_tests\|punit_tests\)\]=\]/ s/)/ "--input-file .\/list-test-names-${{matrix.tag}}" "--min-duration 1")/' tests/unit/CTestTestfile.cmake
|
||||
shell: bash
|
||||
|
||||
- name: Copy Data
|
||||
if: ${{steps.debug.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build
|
||||
run: |
|
||||
ninja cmake_object_order_depends_target_unit_tests
|
||||
cp -pR ../tests/unit/data tests/unit
|
||||
shell: bash
|
||||
@@ -0,0 +1,64 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
---
|
||||
name: 'Setup state'
|
||||
description: 'Sets up the state to be able to run build & run'
|
||||
|
||||
inputs:
|
||||
par:
|
||||
description: 'Whether to build for parallel (true/false)'
|
||||
default: false
|
||||
sanitizer:
|
||||
description: 'Sanitizer to use (asan, msan, ubsan)'
|
||||
default: asan
|
||||
|
||||
runs:
|
||||
using: 'composite'
|
||||
steps:
|
||||
- uses: actions/cache/restore@v4 # Cache for LLVM libcxx
|
||||
with:
|
||||
path: ${{env.LLVM_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
key: build-libcxx-${{env.LLVM_VER}}-${{inputs.sanitizer}}
|
||||
|
||||
- uses: ./.github/actions/sanitize/mpi
|
||||
if: ${{inputs.par == 'true'}}
|
||||
|
||||
- uses: actions/cache/restore@v4 # Cache for Hypre
|
||||
if: ${{inputs.par == 'true'}}
|
||||
with:
|
||||
path: ${{env.HYPRE_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
|
||||
|
||||
- uses: actions/cache/restore@v4 # Cache for Metis
|
||||
if: ${{inputs.par == 'true'}}
|
||||
with:
|
||||
path: ${{env.METIS_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
|
||||
|
||||
- name: Hypre/Metis links
|
||||
if: ${{inputs.par == 'true'}}
|
||||
run: ln -s -f ${{env.HYPRE_DIR}} hypre && ln -s -f ${{env.METIS_DIR}} metis-4.0
|
||||
shell: bash
|
||||
|
||||
- uses: actions/cache/restore@v4 # Cache for LSAN suppression file
|
||||
with:
|
||||
path: ${{env.LSAN_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
key: build-lsan-suppression-file
|
||||
|
||||
- uses: actions/checkout@v4 # Checkout the repository
|
||||
with:
|
||||
path: mfem
|
||||
# ref: ${{env.BRANCH}}
|
||||
# repository: ${{env.REPOSITORY}}
|
||||
@@ -7,18 +7,17 @@
|
||||
|
||||
https://mfem.org
|
||||
|
||||
|
||||
This directory contains the GitHub CI scripts for MFEM.
|
||||
|
||||
Note that some of these scripts use the shared MFEM GitHub Actions from the external mfem/github-actions repository:
|
||||
|
||||
https://github.com/mfem/github-actions
|
||||
<https://github.com/mfem/github-actions>
|
||||
|
||||
For a particular action, e.g. `mfem/github-actions/build-mfem@v2.1`, the `v2.1` suffix denotes the branch in the above from which the action is taken.
|
||||
For a particular action, e.g. `mfem/github-actions/build-mfem@v2.5`, the `v2.5` suffix denotes the branch in the above from which the action is taken.
|
||||
|
||||
The current CI workflows are:
|
||||
|
||||
### `repo-check.yml`
|
||||
## `repo-check.yml`
|
||||
|
||||
Runs a number of static repository-level sanity checks.
|
||||
|
||||
@@ -30,19 +29,39 @@ Runs a number of static repository-level sanity checks.
|
||||
|
||||
- `branch-history` guards against accidental commits of large files using the `--history` option of the `config/githooks/pre-push` script.
|
||||
|
||||
### `mfem-analysis.yml` (`build-analysis`)
|
||||
## `mfem-analysis.yml` (`build-analysis`)
|
||||
|
||||
Checks if the code builds and satisfies minimal requirements.
|
||||
|
||||
- `gitignore` builds hypre, METIS, and MFEM using `mfem/github-actions/build-hypre`, `mfem/github-actions/build-metis`, and `mfem/github-actions/build-mfem` and checks for correct `.gitignore` settings by running the `tests/scripts/gitignore` script.
|
||||
|
||||
### `builds-and-tests.yml`
|
||||
## `builds-and-tests.yml`
|
||||
|
||||
Runs a matrix of builds and tests runs with different compilers, OS, mfem/hypre settings, etc. Also processes and upload Codecov reports.
|
||||
|
||||
Uses the following GitHub Actions from https://github.com/mfem/github-actions:
|
||||
Uses the following GitHub Actions from <https://github.com/mfem/github-actions>:
|
||||
|
||||
- `mfem/github-actions/build-hypre`
|
||||
- `mfem/github-actions/build-metis`
|
||||
- `mfem/github-actions/build-mfem`
|
||||
- `mfem/github-actions/upload-coverage`
|
||||
|
||||
## Sanitizer Workflow for MFEM Verification
|
||||
|
||||
This workflow validates MFEM unit tests, examples, and miniapps using sanitizer tools.
|
||||
|
||||
- `sanitizers.yml` orchestrates:
|
||||
- Building and caching dependencies: HYPRE, METIS, LSAN suppression file, and LLVM libcxx.
|
||||
- Launching fine-grained jobs for serial (ASAN, MSAN, UBSAN) and parallel (ASAN, UBSAN) sanitizers.
|
||||
- `sanitize-tests.yml` is a reusable workflow accepting `par` mode (`true` for parallel) and `sanitizer` (ASAN, MSAN, or UBSAN) as inputs. It executes the following jobs:
|
||||
- **Build**: Compiles the MFEM library with specified parallel and sanitizer settings.
|
||||
- **Check**: Runs verification checks.
|
||||
- Parallel jobs to test the following: **Examples**, **Miniapps** and **Unit tests**
|
||||
|
||||
The workflow leverages composite actions in `.github/actions/sanitize/`:
|
||||
|
||||
- `config`: Centralizes settings for the sanitizer workflow.
|
||||
- `mfem`: Manages the MFEM library build process.
|
||||
- `mpi`: Installs MPI and applies additional compilation flags.
|
||||
- `restore`: Restores the testing environment state.
|
||||
- `setup`: Builds or restores cached dependencies.
|
||||
|
||||
@@ -1,69 +0,0 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: "Sanitizer"
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- next
|
||||
pull_request:
|
||||
workflow_dispatch:
|
||||
|
||||
concurrency:
|
||||
group: ${{ github.workflow }}-${{ github.ref }}
|
||||
cancel-in-progress: true
|
||||
|
||||
jobs:
|
||||
Serial:
|
||||
runs-on: ubuntu-24.04
|
||||
|
||||
steps:
|
||||
- name: MFEM Checkout
|
||||
uses: actions/checkout@v4
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
- name: MFEM Build
|
||||
uses: mfem/github-actions/build-mfem@v2.5
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
mpi: seq
|
||||
hypre-dir: unused-hypre-dir
|
||||
metis-dir: unused-metis-dir
|
||||
mfem-dir: mfem
|
||||
build-system: make
|
||||
library-only: false
|
||||
config-options:
|
||||
CXX="clang++-18"
|
||||
CXXFLAGS="-g -O1 -std=c++17
|
||||
-fsanitize=address
|
||||
-fno-omit-frame-pointer
|
||||
-fsanitize-address-use-after-scope"
|
||||
|
||||
- name: MFEM Info
|
||||
working-directory: mfem
|
||||
run: make info
|
||||
|
||||
- name: MFEM Sanitize
|
||||
working-directory: mfem
|
||||
run:
|
||||
ASAN_OPTIONS="detect_leaks=1,
|
||||
strict_init_order=1,
|
||||
strict_string_checks=1,
|
||||
check_initialization_order=1,
|
||||
detect_stack_use_after_return=1"
|
||||
make test
|
||||
@@ -0,0 +1,39 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
---
|
||||
name: build-hypre
|
||||
on:
|
||||
workflow_call:
|
||||
jobs:
|
||||
build-hypre:
|
||||
runs-on: ubuntu-latest
|
||||
name: 2.19.0
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{env.HYPRE_DIR}}
|
||||
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
|
||||
- name: Setup
|
||||
if: steps.cache.outputs.cache-hit != 'true'
|
||||
uses: ./.github/actions/sanitize/mpi
|
||||
- name: Build
|
||||
if: steps.cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
with:
|
||||
archive: ${{env.HYPRE_TGZ}}
|
||||
dir: ${{env.HYPRE_DIR}}
|
||||
target: int32
|
||||
precision: fp64
|
||||
build-system: make
|
||||
@@ -0,0 +1,76 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
---
|
||||
name: build-libcxx
|
||||
on:
|
||||
workflow_call:
|
||||
jobs:
|
||||
build-llvm-libcxx:
|
||||
runs-on: ubuntu-latest
|
||||
strategy:
|
||||
matrix:
|
||||
sanitizer: [asan, msan, ubsan]
|
||||
include:
|
||||
- sanitizer: asan
|
||||
llvm_use_sanitizer: "Address"
|
||||
- sanitizer: msan
|
||||
llvm_use_sanitizer: "MemoryWithOrigins"
|
||||
- sanitizer: ubsan
|
||||
llvm_use_sanitizer: "Undefined"
|
||||
name: ${{matrix.sanitizer}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
with:
|
||||
NO_FLAGS: true
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{env.LLVM_DIR}}
|
||||
key: build-libcxx-${{env.LLVM_VER}}-${{matrix.sanitizer}}
|
||||
- name: Clone
|
||||
if: ${{ steps.cache.outputs.cache-hit != 'true' }}
|
||||
run: >
|
||||
git clone --filter=blob:none --depth=1
|
||||
--branch llvmorg-${{env.LLVM_VER}}
|
||||
--no-checkout https://github.com/llvm/llvm-project.git llvm-project
|
||||
- name: Checkout
|
||||
if: ${{ steps.cache.outputs.cache-hit != 'true' }}
|
||||
working-directory: llvm-project
|
||||
run: |
|
||||
git sparse-checkout set --cone
|
||||
git checkout llvmorg-${{env.LLVM_VER}}
|
||||
git sparse-checkout set cmake llvm/cmake runtimes libcxx libcxxabi
|
||||
- name: Mkdir
|
||||
if: ${{ steps.cache.outputs.cache-hit != 'true' }}
|
||||
run: mkdir ${{env.LLVM_DIR}}
|
||||
- name: CMake
|
||||
if: ${{ steps.cache.outputs.cache-hit != 'true' }}
|
||||
working-directory: ${{env.LLVM_DIR}}
|
||||
run: >
|
||||
VERBOSE=1
|
||||
cmake -GNinja ../llvm-project/runtimes/
|
||||
-DCMAKE_C_COMPILER=${{env.CC}}
|
||||
-DCMAKE_CXX_COMPILER=${{env.CXX}}
|
||||
-DCMAKE_BUILD_TYPE=RelWithDebInfo
|
||||
-DCMAKE_INSTALL_PREFIX=/usr
|
||||
-DLLVM_USE_SANITIZER=${{matrix.llvm_use_sanitizer}}
|
||||
-DLLVM_BUILD_32_BITS=OFF
|
||||
-DLIBCXXABI_USE_LLVM_UNWINDER=OFF
|
||||
-DLLVM_INCLUDE_TESTS=OFF
|
||||
-DLIBCXX_INCLUDE_TESTS=OFF
|
||||
-DLIBCXX_INCLUDE_BENCHMARKS=OFF
|
||||
-DLLVM_ENABLE_RUNTIMES='libcxx;libcxxabi'
|
||||
- name: Build
|
||||
if: ${{ steps.cache.outputs.cache-hit != 'true' }}
|
||||
working-directory: ${{env.LLVM_DIR}}
|
||||
run: cmake --build . -- cxx cxxabi
|
||||
@@ -0,0 +1,38 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
---
|
||||
name: build-file-lsan
|
||||
on:
|
||||
workflow_call:
|
||||
jobs:
|
||||
build-file-lsan:
|
||||
runs-on: ubuntu-latest
|
||||
name: lsan.supp
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{env.LSAN_DIR}}
|
||||
key: build-lsan-suppression-file
|
||||
- name: Setup
|
||||
if: steps.cache.outputs.cache-hit != 'true'
|
||||
run: |
|
||||
mkdir -p ${{env.LSAN_DIR}}
|
||||
cat << EOF > ${{env.LSAN_DIR}}/${{env.LSAN_FILE}}
|
||||
leak:libevent_core-2.1.so
|
||||
leak:ompi_mpi_finalize
|
||||
leak:ompi_mpi_init
|
||||
leak:PMPI_Init
|
||||
leak:strdup
|
||||
EOF
|
||||
@@ -0,0 +1,36 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
---
|
||||
name: build-metis
|
||||
on:
|
||||
workflow_call:
|
||||
jobs:
|
||||
build-metis:
|
||||
runs-on: ubuntu-latest
|
||||
name: 4.0.3
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
with:
|
||||
path: ${{env.METIS_DIR}}
|
||||
key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
|
||||
- name: Setup
|
||||
if: steps.cache.outputs.cache-hit != 'true'
|
||||
uses: ./.github/actions/sanitize/mpi
|
||||
- name: Build
|
||||
if: steps.cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.5
|
||||
with:
|
||||
archive: ${{env.METIS_TGZ}}
|
||||
dir: ${{env.METIS_DIR}}
|
||||
@@ -0,0 +1,197 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
---
|
||||
name: Sanitize
|
||||
on:
|
||||
workflow_call:
|
||||
inputs:
|
||||
par:
|
||||
description: 'Whether to build for parallel (true/false)'
|
||||
required: false
|
||||
default: false
|
||||
type: boolean
|
||||
sanitizer:
|
||||
description: 'Sanitizer to use (asan, msan, ubsan)'
|
||||
required: true
|
||||
default: asan
|
||||
type: string
|
||||
|
||||
jobs:
|
||||
build:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/mfem
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
sanitizer: ${{inputs.sanitizer}}
|
||||
|
||||
check:
|
||||
needs: [build]
|
||||
runs-on: ubuntu-latest
|
||||
env:
|
||||
ex: ${{inputs.par && 'ex1p' || 'ex1'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
sanitizer: ${{inputs.sanitizer}}
|
||||
cache-path: mfem/build/examples/${{env.ex}}
|
||||
- name: MFEM Check
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build
|
||||
run: ninja -v check
|
||||
|
||||
examples:
|
||||
needs: [check]
|
||||
runs-on: ubuntu-latest
|
||||
env:
|
||||
exclude: ${{inputs.par && '-E "_ser"' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
sanitizer: ${{inputs.sanitizer}}
|
||||
cache-path: mfem/build/examples/ex1
|
||||
- name: Build Examples
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build
|
||||
run: ninja -v examples
|
||||
- name: Test Examples
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build
|
||||
run: |
|
||||
${{env.CTEST}} examples ${{env.exclude}} --show-only
|
||||
${{env.CTEST}} examples ${{env.exclude}}
|
||||
|
||||
miniapps:
|
||||
needs: [check]
|
||||
runs-on: ubuntu-latest
|
||||
env:
|
||||
exclude: ${{inputs.par && '-E "_ser"' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
sanitizer: ${{inputs.sanitizer}}
|
||||
cache-path: mfem/build/miniapps/meshing/minimal-surface
|
||||
- name: Build Miniapps
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build
|
||||
run: ninja -v miniapps
|
||||
- name: Test Miniapps
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build
|
||||
run: |
|
||||
${{env.CTEST}} miniapps ${{env.exclude}} --show-only
|
||||
${{env.CTEST}} miniapps ${{env.exclude}}
|
||||
|
||||
tests-miniapps:
|
||||
needs: [check]
|
||||
runs-on: ubuntu-latest
|
||||
env:
|
||||
run: ${{inputs.par && '-R "_cpu_np"' || ''}}
|
||||
exclude: ${{inputs.par && '"unit_tests|debug"' || '"^unit_tests$|debug"'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
sanitizer: ${{inputs.sanitizer}}
|
||||
cache-path: mfem/build/tests/unit/sedov_tests_cpu
|
||||
- name: Build Tests Unit Miniapps
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build
|
||||
run: ninja -v tests/unit/all
|
||||
- name: Run Tests Unit Miniapps
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build
|
||||
run: |
|
||||
${{env.CTEST}} tests/unit -E ${{env.exclude}} ${{env.run}} --show-only
|
||||
${{env.CTEST}} tests/unit -E ${{env.exclude}} ${{env.run}}
|
||||
|
||||
tests-unit-build:
|
||||
needs: [check]
|
||||
runs-on: ubuntu-latest
|
||||
env:
|
||||
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
sanitizer: ${{inputs.sanitizer}}
|
||||
cache-path: mfem/build/tests/unit/${{env.unit_tests}}
|
||||
- name: Build Unit Tests
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build
|
||||
run: ninja -v ${{env.unit_tests}}
|
||||
- name: Delete object files
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build/tests/unit
|
||||
run: find . -type f -name '*.o' -delete
|
||||
- uses: actions/upload-artifact@v4
|
||||
with:
|
||||
name: tests-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
path: mfem/build/tests/unit/${{env.unit_tests}}
|
||||
if-no-files-found: error
|
||||
retention-days: 1
|
||||
overwrite: false
|
||||
|
||||
tests-unit-run:
|
||||
needs: [tests-unit-build]
|
||||
runs-on: ubuntu-latest
|
||||
strategy:
|
||||
matrix:
|
||||
tag: [0, 1, 2, 3]
|
||||
name: tests-unit-run-${{matrix.tag}}
|
||||
env:
|
||||
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
|
||||
np: ${{inputs.par && '_np=2' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
sanitizer: ${{inputs.sanitizer}}
|
||||
cache-path: mfem/build/tests/unit/${{env.unit_tests}}
|
||||
- uses: actions/download-artifact@v4
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
with:
|
||||
name: tests-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
path: mfem/build/tests/unit
|
||||
- name: Split Unit Tests
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build/tests/unit
|
||||
run: |
|
||||
chmod 755 ${{env.unit_tests}}
|
||||
./${{env.unit_tests}} --list-test-names-only | tail -n +2 > list-test-names
|
||||
shuf list-test-names -o list-test-names
|
||||
split --verbose -n l/4 -d -a 1 list-test-names list-test-names-
|
||||
- name: Cat Unit Tests ${{matrix.tag}}
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build/tests/unit
|
||||
run: cat list-test-names-${{matrix.tag}}
|
||||
- name: Run Unit Tests ${{matrix.tag}}
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build
|
||||
run: |
|
||||
${{env.CTEST}} tests/unit -R "${{env.unit_tests}}${{env.np}}" --show-only
|
||||
${{env.CTEST}} tests/unit -R "${{env.unit_tests}}${{env.np}}"
|
||||
@@ -0,0 +1,73 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
---
|
||||
name: Sanitizers
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches: ["master", "next"]
|
||||
pull_request:
|
||||
workflow_dispatch:
|
||||
|
||||
concurrency:
|
||||
group: ${{github.workflow}}-${{github.ref}}
|
||||
cancel-in-progress: true
|
||||
|
||||
jobs:
|
||||
|
||||
# Build steps for dependencies
|
||||
build-hypre:
|
||||
uses: ./.github/workflows/sanitize-build-hypre.yml
|
||||
|
||||
build-metis:
|
||||
uses: ./.github/workflows/sanitize-build-metis.yml
|
||||
|
||||
build-lsan:
|
||||
uses: ./.github/workflows/sanitize-build-lsan.yml
|
||||
|
||||
build-libcxx:
|
||||
uses: ./.github/workflows/sanitize-build-libcxx.yml
|
||||
|
||||
# Serial sanitizers: asan, msan, ubsan
|
||||
seq-asan:
|
||||
needs: [build-libcxx]
|
||||
uses: ./.github/workflows/sanitize-tests.yml
|
||||
with:
|
||||
sanitizer: asan
|
||||
|
||||
seq-msan:
|
||||
needs: [build-libcxx]
|
||||
uses: ./.github/workflows/sanitize-tests.yml
|
||||
with:
|
||||
sanitizer: msan
|
||||
|
||||
seq-ubsan:
|
||||
needs: [build-libcxx]
|
||||
uses: ./.github/workflows/sanitize-tests.yml
|
||||
with:
|
||||
sanitizer: ubsan
|
||||
|
||||
# Parallel sanitizers: asan, ubsan
|
||||
par-asan:
|
||||
needs: [build-libcxx, build-hypre, build-metis]
|
||||
uses: ./.github/workflows/sanitize-tests.yml
|
||||
with:
|
||||
par: true
|
||||
sanitizer: asan
|
||||
par-ubsan:
|
||||
needs: [build-libcxx, build-hypre, build-metis]
|
||||
uses: ./.github/workflows/sanitize-tests.yml
|
||||
with:
|
||||
par: true
|
||||
sanitizer: ubsan
|
||||
+11
-2
@@ -232,6 +232,7 @@ miniapps/meshing/fit-node-position
|
||||
miniapps/meshing/trimmer
|
||||
miniapps/meshing/reflector
|
||||
miniapps/meshing/ref321
|
||||
miniapps/meshing/mesh-bounding-boxes
|
||||
miniapps/meshing/mesh-optimizer
|
||||
miniapps/meshing/pmesh-optimizer
|
||||
miniapps/meshing/pmesh-fitting
|
||||
@@ -262,6 +263,8 @@ miniapps/meshing/mesh.*
|
||||
miniapps/meshing/order.*
|
||||
miniapps/meshing/sol.*
|
||||
miniapps/meshing/refined.mesh
|
||||
miniapps/meshing/bounding-box*
|
||||
miniapps/meshing/jacobian-determinant*
|
||||
|
||||
miniapps/mtop/parheat
|
||||
miniapps/mtop/ParHeat*
|
||||
@@ -297,6 +300,7 @@ miniapps/nurbs/nurbs_solenoidal
|
||||
miniapps/nurbs/nurbs_printfunc
|
||||
miniapps/nurbs/nurbs_patch_ex1
|
||||
miniapps/nurbs/nurbs_curveint
|
||||
miniapps/nurbs/nurbs_surface
|
||||
miniapps/nurbs/refined.mesh
|
||||
miniapps/nurbs/mesh.*
|
||||
miniapps/nurbs/sol_?.gf
|
||||
@@ -315,6 +319,7 @@ miniapps/nurbs/nurbs_naca_cmesh
|
||||
miniapps/nurbs/naca-cmesh.mesh
|
||||
miniapps/nurbs/glvis_naca-cmesh.mesh
|
||||
miniapps/nurbs/Naca_cmesh
|
||||
miniapps/nurbs/*-Surface.mesh
|
||||
|
||||
miniapps/performance/ex1
|
||||
miniapps/performance/ex1p
|
||||
@@ -336,6 +341,7 @@ miniapps/shifted/lsf_integral
|
||||
miniapps/tools/display-basis
|
||||
miniapps/tools/load-dc
|
||||
miniapps/tools/convert-dc
|
||||
miniapps/tools/gridfunction-bounds
|
||||
miniapps/tools/lor-transfer
|
||||
miniapps/tools/plor-transfer
|
||||
miniapps/tools/get-values
|
||||
@@ -402,12 +408,15 @@ miniapps/spde/ParaView
|
||||
|
||||
miniapps/tribol/contact-patch-test
|
||||
|
||||
miniapps/diag-smoothers/abs-l1-jacobi
|
||||
miniapps/diag-smoothers/mg-abs-l1-jacobi
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
tests/unit/punit_tests
|
||||
tests/unit/cunit_tests
|
||||
tests/unit/pcunit_tests
|
||||
tests/unit/gpu_unit_tests
|
||||
tests/unit/pgpu_unit_tests
|
||||
tests/unit/sedov_tests_*
|
||||
tests/unit/psedov_tests_*
|
||||
tests/unit/tmop_pa_tests_*
|
||||
|
||||
@@ -29,9 +29,14 @@ Discretization improvements
|
||||
|
||||
Meshing improvements
|
||||
--------------------
|
||||
|
||||
- Added support for higher order meshes in Mesh::MakeSimplicial and
|
||||
ParMesh::MakeSimplicial.
|
||||
|
||||
- Added a new miniapp for interpolating a surface grid of points in 3D using a
|
||||
smooth NURBS surface, that can then be sampled at arbitrary resolution while
|
||||
staying close to the original geometry. See miniapps/nurbs/nurbs_surface.
|
||||
|
||||
GPU computing
|
||||
-------------
|
||||
- The function Vector::SetSubVector(const Array<int> &, const real_t) now
|
||||
@@ -39,12 +44,37 @@ GPU computing
|
||||
set. This is most often used for setting constant essential boundary
|
||||
conditions. A new function Vector::SetSubVectorHost has been added in cases
|
||||
where host execution is always needed (e.g. when the DOFs array is small).
|
||||
- Introduced MFEM_FOREACH_THREAD_DIRECT, which directly maps loop tasks to GPU
|
||||
threads, assigning one task per thread.
|
||||
|
||||
API changes:
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added miniapps to demonstrate an implementation of the absolute-value
|
||||
L(1)-Jacobi preconditioners in partially assembled operators. This includes
|
||||
Multigrid wrapper to demonstrate the effectiveness of these Jacobi-type
|
||||
operators as smoothers.
|
||||
These miniapps can be found in `miniapps/diag-smoothers`.
|
||||
|
||||
API changes
|
||||
-----------
|
||||
- mfem::internal::tensor and mfem::internal::dual have been moved to
|
||||
mfem::future::tensor and mfem::future::dual.
|
||||
- API addition: in class `Operator`, added virtual functions: `AbsMult`, and
|
||||
`AbsMultTranspose`; in class `Vector`, added `Abs` and `Pow`.
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- Added the "gpu", "raja-gpu", and "ceed-gpu" backend aliases/shortcuts which
|
||||
automatically select between CUDA or HIP.
|
||||
- The CUDA-specific names used by some of the unit tests like 'cunit_tests' and
|
||||
'pcunit_tests' were replaced by names using 'gpu' instead of 'c' (short for
|
||||
CUDA) or 'cuda'. These tests automatically run the CUDA/HIP tests based on the
|
||||
MFEM build configuration.
|
||||
- Added the option to enable GPU-aware MPI in MFEM using the environment
|
||||
variable 'MFEM_GPU_AWARE_MPI' set to any value. Setting this environment
|
||||
variable is an alternative to calling 'Device::SetGPUAwareMPI(true)'.
|
||||
- Added parallel Address Sanitizer, serial and parallel Undefined Behavior
|
||||
Sanitizer and serial Memory Sanitizer GitHub actions tests on Ubuntu.
|
||||
|
||||
Version 4.8, released on Apr 9, 2025
|
||||
====================================
|
||||
|
||||
+1
-1
@@ -115,7 +115,7 @@ vertices
|
||||
|
||||
nodes
|
||||
FiniteElementSpace
|
||||
FiniteElementCollection: Quadratic
|
||||
FiniteElementCollection: H1_3D_P2
|
||||
VDim: 3
|
||||
Ordering: 0
|
||||
|
||||
|
||||
@@ -56,7 +56,7 @@ vertices
|
||||
|
||||
nodes
|
||||
FiniteElementSpace
|
||||
FiniteElementCollection: Quadratic
|
||||
FiniteElementCollection: H1_3D_P2
|
||||
VDim: 3
|
||||
Ordering: 0
|
||||
|
||||
|
||||
@@ -227,7 +227,7 @@ vertices
|
||||
|
||||
nodes
|
||||
FiniteElementSpace
|
||||
FiniteElementCollection: Quadratic
|
||||
FiniteElementCollection: H1_2D_P2
|
||||
VDim: 2
|
||||
Ordering: 0
|
||||
|
||||
|
||||
+1
-1
@@ -65,7 +65,7 @@ vertices
|
||||
|
||||
nodes
|
||||
FiniteElementSpace
|
||||
FiniteElementCollection: Quadratic
|
||||
FiniteElementCollection: H1_2D_P2
|
||||
VDim: 2
|
||||
Ordering: 0
|
||||
|
||||
|
||||
+35
-76
@@ -62,14 +62,9 @@ static real_t epsilon_ = 1.0;
|
||||
static real_t sigma_ = 20.0;
|
||||
static real_t omega_ = 10.0;
|
||||
|
||||
real_t u0_real_exact(const Vector &);
|
||||
real_t u0_imag_exact(const Vector &);
|
||||
|
||||
void u1_real_exact(const Vector &, Vector &);
|
||||
void u1_imag_exact(const Vector &, Vector &);
|
||||
|
||||
void u2_real_exact(const Vector &, Vector &);
|
||||
void u2_imag_exact(const Vector &, Vector &);
|
||||
complex<real_t> u0_exact(const Vector &x);
|
||||
void u1_exact(const Vector &, ComplexVector &);
|
||||
void u2_exact(const Vector &, ComplexVector &);
|
||||
|
||||
bool check_for_inline_mesh(const char * mesh_file);
|
||||
|
||||
@@ -215,54 +210,48 @@ int main(int argc, char *argv[])
|
||||
ComplexGridFunction * u_exact = NULL;
|
||||
if (exact_sol) { u_exact = new ComplexGridFunction(fespace); }
|
||||
|
||||
FunctionCoefficient u0_r(u0_real_exact);
|
||||
FunctionCoefficient u0_i(u0_imag_exact);
|
||||
VectorFunctionCoefficient u1_r(dim, u1_real_exact);
|
||||
VectorFunctionCoefficient u1_i(dim, u1_imag_exact);
|
||||
VectorFunctionCoefficient u2_r(dim, u2_real_exact);
|
||||
VectorFunctionCoefficient u2_i(dim, u2_imag_exact);
|
||||
ComplexFunctionCoefficient u0(u0_exact);
|
||||
ComplexVectorFunctionCoefficient u1(dim, u1_exact);
|
||||
ComplexVectorFunctionCoefficient u2(dim, u2_exact);
|
||||
|
||||
ConstantCoefficient zeroCoef(0.0);
|
||||
ConstantCoefficient oneCoef(1.0);
|
||||
ComplexConstantCoefficient oneCoef(1.0);
|
||||
|
||||
Vector zeroVec(dim); zeroVec = 0.0;
|
||||
Vector oneVec(dim); oneVec = 0.0; oneVec[(prob==2)?(dim-1):0] = 1.0;
|
||||
VectorConstantCoefficient zeroVecCoef(zeroVec);
|
||||
VectorConstantCoefficient oneVecCoef(oneVec);
|
||||
ComplexVectorConstantCoefficient oneVecCoef(oneVec);
|
||||
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
if (exact_sol)
|
||||
{
|
||||
u.ProjectBdrCoefficient(u0_r, u0_i, ess_bdr);
|
||||
u_exact->ProjectCoefficient(u0_r, u0_i);
|
||||
u.ProjectBdrCoefficient(u0, ess_bdr);
|
||||
u_exact->ProjectCoefficient(u0);
|
||||
}
|
||||
else
|
||||
{
|
||||
u.ProjectBdrCoefficient(oneCoef, zeroCoef, ess_bdr);
|
||||
u.ProjectBdrCoefficient(oneCoef, ess_bdr);
|
||||
}
|
||||
break;
|
||||
case 1:
|
||||
if (exact_sol)
|
||||
{
|
||||
u.ProjectBdrCoefficientTangent(u1_r, u1_i, ess_bdr);
|
||||
u_exact->ProjectCoefficient(u1_r, u1_i);
|
||||
u.ProjectBdrCoefficientTangent(u1, ess_bdr);
|
||||
u_exact->ProjectCoefficient(u1);
|
||||
}
|
||||
else
|
||||
{
|
||||
u.ProjectBdrCoefficientTangent(oneVecCoef, zeroVecCoef, ess_bdr);
|
||||
u.ProjectBdrCoefficientTangent(oneVecCoef, ess_bdr);
|
||||
}
|
||||
break;
|
||||
case 2:
|
||||
if (exact_sol)
|
||||
{
|
||||
u.ProjectBdrCoefficientNormal(u2_r, u2_i, ess_bdr);
|
||||
u_exact->ProjectCoefficient(u2_r, u2_i);
|
||||
u.ProjectBdrCoefficientNormal(u2, ess_bdr);
|
||||
u_exact->ProjectCoefficient(u2);
|
||||
}
|
||||
else
|
||||
{
|
||||
u.ProjectBdrCoefficientNormal(oneVecCoef, zeroVecCoef, ess_bdr);
|
||||
u.ProjectBdrCoefficientNormal(oneVecCoef, ess_bdr);
|
||||
}
|
||||
break;
|
||||
default: break; // This should be unreachable
|
||||
@@ -300,27 +289,24 @@ int main(int argc, char *argv[])
|
||||
ConstantCoefficient lossCoef(omega_ * sigma_);
|
||||
ConstantCoefficient negMassCoef(omega_ * omega_ * epsilon_);
|
||||
|
||||
ComplexConstantCoefficient complexMassCoef(-omega_ * omega_ * epsilon_,
|
||||
omega_ * sigma_);
|
||||
|
||||
SesquilinearForm *a = new SesquilinearForm(fespace, conv);
|
||||
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(stiffnessCoef),
|
||||
NULL);
|
||||
a->AddDomainIntegrator(new MassIntegrator(massCoef),
|
||||
new MassIntegrator(lossCoef));
|
||||
a->AddDomainIntegrator<DiffusionIntegrator>(stiffnessCoef);
|
||||
a->AddDomainIntegrator<MassIntegrator>(complexMassCoef);
|
||||
break;
|
||||
case 1:
|
||||
a->AddDomainIntegrator(new CurlCurlIntegrator(stiffnessCoef),
|
||||
NULL);
|
||||
a->AddDomainIntegrator(new VectorFEMassIntegrator(massCoef),
|
||||
new VectorFEMassIntegrator(lossCoef));
|
||||
a->AddDomainIntegrator<CurlCurlIntegrator>(stiffnessCoef);
|
||||
a->AddDomainIntegrator<VectorFEMassIntegrator>(complexMassCoef);
|
||||
break;
|
||||
case 2:
|
||||
a->AddDomainIntegrator(new DivDivIntegrator(stiffnessCoef),
|
||||
NULL);
|
||||
a->AddDomainIntegrator(new VectorFEMassIntegrator(massCoef),
|
||||
new VectorFEMassIntegrator(lossCoef));
|
||||
a->AddDomainIntegrator<DivDivIntegrator>(stiffnessCoef);
|
||||
a->AddDomainIntegrator<VectorFEMassIntegrator>(complexMassCoef);
|
||||
break;
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
@@ -436,29 +422,24 @@ int main(int argc, char *argv[])
|
||||
|
||||
if (exact_sol)
|
||||
{
|
||||
real_t err_r = -1.0;
|
||||
real_t err_i = -1.0;
|
||||
real_t err_u = -1.0;
|
||||
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
err_r = u.real().ComputeL2Error(u0_r);
|
||||
err_i = u.imag().ComputeL2Error(u0_i);
|
||||
err_u = u.ComputeL2Error(u0);
|
||||
break;
|
||||
case 1:
|
||||
err_r = u.real().ComputeL2Error(u1_r);
|
||||
err_i = u.imag().ComputeL2Error(u1_i);
|
||||
err_u = u.ComputeL2Error(u1);
|
||||
break;
|
||||
case 2:
|
||||
err_r = u.real().ComputeL2Error(u2_r);
|
||||
err_i = u.imag().ComputeL2Error(u2_i);
|
||||
err_u = u.ComputeL2Error(u2);
|
||||
break;
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
|
||||
cout << endl;
|
||||
cout << "|| Re (u_h - u) ||_{L^2} = " << err_r << endl;
|
||||
cout << "|| Im (u_h - u) ||_{L^2} = " << err_i << endl;
|
||||
cout << "|| u_h - u ||_{L^2} = " << err_u << endl;
|
||||
cout << endl;
|
||||
}
|
||||
|
||||
@@ -564,36 +545,14 @@ complex<real_t> u0_exact(const Vector &x)
|
||||
return std::exp(-i * kappa * x[dim - 1]);
|
||||
}
|
||||
|
||||
real_t u0_real_exact(const Vector &x)
|
||||
{
|
||||
return u0_exact(x).real();
|
||||
}
|
||||
|
||||
real_t u0_imag_exact(const Vector &x)
|
||||
{
|
||||
return u0_exact(x).imag();
|
||||
}
|
||||
|
||||
void u1_real_exact(const Vector &x, Vector &v)
|
||||
void u1_exact(const Vector &x, ComplexVector &v)
|
||||
{
|
||||
int dim = x.Size();
|
||||
v.SetSize(dim); v = 0.0; v[0] = u0_real_exact(x);
|
||||
v.SetSize(dim); v = 0.0; v[0] = u0_exact(x);
|
||||
}
|
||||
|
||||
void u1_imag_exact(const Vector &x, Vector &v)
|
||||
void u2_exact(const Vector &x, ComplexVector &v)
|
||||
{
|
||||
int dim = x.Size();
|
||||
v.SetSize(dim); v = 0.0; v[0] = u0_imag_exact(x);
|
||||
}
|
||||
|
||||
void u2_real_exact(const Vector &x, Vector &v)
|
||||
{
|
||||
int dim = x.Size();
|
||||
v.SetSize(dim); v = 0.0; v[dim-1] = u0_real_exact(x);
|
||||
}
|
||||
|
||||
void u2_imag_exact(const Vector &x, Vector &v)
|
||||
{
|
||||
int dim = x.Size();
|
||||
v.SetSize(dim); v = 0.0; v[dim-1] = u0_imag_exact(x);
|
||||
v.SetSize(dim); v = 0.0; v[dim-1] = u0_exact(x);
|
||||
}
|
||||
|
||||
+50
-33
@@ -62,6 +62,10 @@ static real_t epsilon_ = 1.0;
|
||||
static real_t sigma_ = 20.0;
|
||||
static real_t omega_ = 10.0;
|
||||
|
||||
complex<real_t> u0_exact(const Vector &x);
|
||||
void u1_exact(const Vector &, ComplexVector &);
|
||||
void u2_exact(const Vector &, ComplexVector &);
|
||||
|
||||
real_t u0_real_exact(const Vector &);
|
||||
real_t u0_imag_exact(const Vector &);
|
||||
|
||||
@@ -244,13 +248,22 @@ int main(int argc, char *argv[])
|
||||
ParComplexGridFunction * u_exact = NULL;
|
||||
if (exact_sol) { u_exact = new ParComplexGridFunction(fespace); }
|
||||
|
||||
ComplexFunctionCoefficient u0(u0_exact);
|
||||
ComplexVectorFunctionCoefficient u1(dim, u1_exact);
|
||||
ComplexVectorFunctionCoefficient u2(dim, u2_exact);
|
||||
|
||||
ComplexConstantCoefficient oneCoef(1.0);
|
||||
|
||||
Vector oneVec(dim); oneVec = 0.0; oneVec[(prob==2)?(dim-1):0] = 1.0;
|
||||
ComplexVectorConstantCoefficient oneVecCoef(oneVec);
|
||||
|
||||
FunctionCoefficient u0_r(u0_real_exact);
|
||||
FunctionCoefficient u0_i(u0_imag_exact);
|
||||
VectorFunctionCoefficient u1_r(dim, u1_real_exact);
|
||||
VectorFunctionCoefficient u1_i(dim, u1_imag_exact);
|
||||
VectorFunctionCoefficient u2_r(dim, u2_real_exact);
|
||||
VectorFunctionCoefficient u2_i(dim, u2_imag_exact);
|
||||
|
||||
/*
|
||||
ConstantCoefficient zeroCoef(0.0);
|
||||
ConstantCoefficient oneCoef(1.0);
|
||||
|
||||
@@ -258,40 +271,40 @@ int main(int argc, char *argv[])
|
||||
Vector oneVec(dim); oneVec = 0.0; oneVec[(prob==2)?(dim-1):0] = 1.0;
|
||||
VectorConstantCoefficient zeroVecCoef(zeroVec);
|
||||
VectorConstantCoefficient oneVecCoef(oneVec);
|
||||
|
||||
*/
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
if (exact_sol)
|
||||
{
|
||||
u.ProjectBdrCoefficient(u0_r, u0_i, ess_bdr);
|
||||
u_exact->ProjectCoefficient(u0_r, u0_i);
|
||||
u.ProjectBdrCoefficient(u0, ess_bdr);
|
||||
u_exact->ProjectCoefficient(u0);
|
||||
}
|
||||
else
|
||||
{
|
||||
u.ProjectBdrCoefficient(oneCoef, zeroCoef, ess_bdr);
|
||||
u.ProjectBdrCoefficient(oneCoef, ess_bdr);
|
||||
}
|
||||
break;
|
||||
case 1:
|
||||
if (exact_sol)
|
||||
{
|
||||
u.ProjectBdrCoefficientTangent(u1_r, u1_i, ess_bdr);
|
||||
u_exact->ProjectCoefficient(u1_r, u1_i);
|
||||
u.ProjectBdrCoefficientTangent(u1, ess_bdr);
|
||||
u_exact->ProjectCoefficient(u1);
|
||||
}
|
||||
else
|
||||
{
|
||||
u.ProjectBdrCoefficientTangent(oneVecCoef, zeroVecCoef, ess_bdr);
|
||||
u.ProjectBdrCoefficientTangent(oneVecCoef, ess_bdr);
|
||||
}
|
||||
break;
|
||||
case 2:
|
||||
if (exact_sol)
|
||||
{
|
||||
u.ProjectBdrCoefficientNormal(u2_r, u2_i, ess_bdr);
|
||||
u_exact->ProjectCoefficient(u2_r, u2_i);
|
||||
u.ProjectBdrCoefficientNormal(u2, ess_bdr);
|
||||
u_exact->ProjectCoefficient(u2);
|
||||
}
|
||||
else
|
||||
{
|
||||
u.ProjectBdrCoefficientNormal(oneVecCoef, zeroVecCoef, ess_bdr);
|
||||
u.ProjectBdrCoefficientNormal(oneVecCoef, ess_bdr);
|
||||
}
|
||||
break;
|
||||
default: break; // This should be unreachable
|
||||
@@ -331,27 +344,24 @@ int main(int argc, char *argv[])
|
||||
ConstantCoefficient lossCoef(omega_ * sigma_);
|
||||
ConstantCoefficient negMassCoef(omega_ * omega_ * epsilon_);
|
||||
|
||||
ComplexConstantCoefficient complexMassCoef(-omega_ * omega_ * epsilon_,
|
||||
omega_ * sigma_);
|
||||
|
||||
ParSesquilinearForm *a = new ParSesquilinearForm(fespace, conv);
|
||||
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(stiffnessCoef),
|
||||
NULL);
|
||||
a->AddDomainIntegrator(new MassIntegrator(massCoef),
|
||||
new MassIntegrator(lossCoef));
|
||||
a->AddDomainIntegrator<DiffusionIntegrator>(stiffnessCoef);
|
||||
a->AddDomainIntegrator<MassIntegrator>(complexMassCoef);
|
||||
break;
|
||||
case 1:
|
||||
a->AddDomainIntegrator(new CurlCurlIntegrator(stiffnessCoef),
|
||||
NULL);
|
||||
a->AddDomainIntegrator(new VectorFEMassIntegrator(massCoef),
|
||||
new VectorFEMassIntegrator(lossCoef));
|
||||
a->AddDomainIntegrator<CurlCurlIntegrator>(stiffnessCoef);
|
||||
a->AddDomainIntegrator<VectorFEMassIntegrator>(complexMassCoef);
|
||||
break;
|
||||
case 2:
|
||||
a->AddDomainIntegrator(new DivDivIntegrator(stiffnessCoef),
|
||||
NULL);
|
||||
a->AddDomainIntegrator(new VectorFEMassIntegrator(massCoef),
|
||||
new VectorFEMassIntegrator(lossCoef));
|
||||
a->AddDomainIntegrator<DivDivIntegrator>(stiffnessCoef);
|
||||
a->AddDomainIntegrator<VectorFEMassIntegrator>(complexMassCoef);
|
||||
break;
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
@@ -475,22 +485,18 @@ int main(int argc, char *argv[])
|
||||
|
||||
if (exact_sol)
|
||||
{
|
||||
real_t err_r = -1.0;
|
||||
real_t err_i = -1.0;
|
||||
real_t err_u = -1.0;
|
||||
|
||||
switch (prob)
|
||||
{
|
||||
case 0:
|
||||
err_r = u.real().ComputeL2Error(u0_r);
|
||||
err_i = u.imag().ComputeL2Error(u0_i);
|
||||
err_u = u.ComputeL2Error(u0);
|
||||
break;
|
||||
case 1:
|
||||
err_r = u.real().ComputeL2Error(u1_r);
|
||||
err_i = u.imag().ComputeL2Error(u1_i);
|
||||
err_u = u.ComputeL2Error(u1);
|
||||
break;
|
||||
case 2:
|
||||
err_r = u.real().ComputeL2Error(u2_r);
|
||||
err_i = u.imag().ComputeL2Error(u2_i);
|
||||
err_u = u.ComputeL2Error(u2);
|
||||
break;
|
||||
default: break; // This should be unreachable
|
||||
}
|
||||
@@ -498,8 +504,7 @@ int main(int argc, char *argv[])
|
||||
if ( myid == 0 )
|
||||
{
|
||||
cout << endl;
|
||||
cout << "|| Re (u_h - u) ||_{L^2} = " << err_r << endl;
|
||||
cout << "|| Im (u_h - u) ||_{L^2} = " << err_i << endl;
|
||||
cout << "|| u_h - u ||_{L^2} = " << err_u << endl;
|
||||
cout << endl;
|
||||
}
|
||||
}
|
||||
@@ -627,6 +632,12 @@ real_t u0_imag_exact(const Vector &x)
|
||||
return u0_exact(x).imag();
|
||||
}
|
||||
|
||||
void u1_exact(const Vector &x, ComplexVector &v)
|
||||
{
|
||||
int dim = x.Size();
|
||||
v.SetSize(dim); v = 0.0; v[0] = u0_exact(x);
|
||||
}
|
||||
|
||||
void u1_real_exact(const Vector &x, Vector &v)
|
||||
{
|
||||
int dim = x.Size();
|
||||
@@ -639,6 +650,12 @@ void u1_imag_exact(const Vector &x, Vector &v)
|
||||
v.SetSize(dim); v = 0.0; v[0] = u0_imag_exact(x);
|
||||
}
|
||||
|
||||
void u2_exact(const Vector &x, ComplexVector &v)
|
||||
{
|
||||
int dim = x.Size();
|
||||
v.SetSize(dim); v = 0.0; v[dim-1] = u0_exact(x);
|
||||
}
|
||||
|
||||
void u2_real_exact(const Vector &x, Vector &v)
|
||||
{
|
||||
int dim = x.Size();
|
||||
|
||||
@@ -59,6 +59,7 @@ set(SRCS
|
||||
integ/nonlininteg_vecconvection_pa.cpp
|
||||
integ/nonlininteg_vecconvection_mf.cpp
|
||||
coefficient.cpp
|
||||
complex_coefficient.cpp
|
||||
complex_fem.cpp
|
||||
convergence.cpp
|
||||
datacollection.cpp
|
||||
@@ -162,6 +163,7 @@ set(SRCS
|
||||
transfer.cpp
|
||||
hyperbolic.cpp
|
||||
integrator.cpp
|
||||
bounds.cpp
|
||||
)
|
||||
|
||||
set(HDRS
|
||||
@@ -175,6 +177,7 @@ set(HDRS
|
||||
integ/bilininteg_hcurlhdiv_kernels.hpp
|
||||
integ/bilininteg_mass_kernels.hpp
|
||||
coefficient.hpp
|
||||
complex_coefficient.hpp
|
||||
complex_fem.hpp
|
||||
convergence.hpp
|
||||
datacollection.hpp
|
||||
@@ -246,6 +249,7 @@ set(HDRS
|
||||
nonlinearform_ext.hpp
|
||||
nonlininteg.hpp
|
||||
qfunction.hpp
|
||||
qinterp/det.hpp
|
||||
qinterp/eval.hpp
|
||||
qinterp/eval_hdiv.hpp
|
||||
qinterp/grad.hpp
|
||||
@@ -272,6 +276,7 @@ set(HDRS
|
||||
transfer.hpp
|
||||
hyperbolic.hpp
|
||||
integrator.hpp
|
||||
bounds.hpp
|
||||
)
|
||||
|
||||
if (MFEM_USE_SIDRE)
|
||||
|
||||
@@ -515,6 +515,7 @@ struct InvTNewtonSolver<Geometry::SEGMENT, SDim, SType, max_team_x>
|
||||
phys_tol += pptr[idx + d * npts] * pptr[idx + d * npts];
|
||||
}
|
||||
phys_tol = fmax(phys_rtol * phys_rtol, phys_tol * phys_rtol * phys_rtol);
|
||||
hit_bdr[0] = prev_hit_bdr[0] = false;
|
||||
}
|
||||
// for each iteration
|
||||
while (true)
|
||||
|
||||
+208
-170
@@ -78,7 +78,7 @@ void MFBilinearFormExtension::AssembleDiagonal(Vector &y) const
|
||||
dynamic_cast<const ElementRestriction*>(elem_restrict);
|
||||
if (H1elem_restrict)
|
||||
{
|
||||
H1elem_restrict->MultTransposeUnsigned(localY, y);
|
||||
H1elem_restrict->AbsMultTranspose(localY, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -456,7 +456,7 @@ void PABilinearFormExtension::AssembleDiagonal(Vector &y) const
|
||||
dynamic_cast<const ElementRestriction*>(elem_restrict);
|
||||
if (H1elem_restrict)
|
||||
{
|
||||
H1elem_restrict->MultTransposeUnsigned(localY, y);
|
||||
H1elem_restrict->AbsMultTranspose(localY, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -491,7 +491,7 @@ void PABilinearFormExtension::AssembleDiagonal(Vector &y) const
|
||||
assemble_diagonal_with_markers(*bdr_integs[i], bdr_markers[i],
|
||||
bdr_attributes, bdr_face_Y);
|
||||
}
|
||||
bdr_face_restrict_lex->AddMultTransposeUnsigned(bdr_face_Y, y);
|
||||
bdr_face_restrict_lex->AddAbsMultTranspose(bdr_face_Y, y);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -526,7 +526,8 @@ void PABilinearFormExtension::FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
A.Reset(oper); // A will own oper
|
||||
}
|
||||
|
||||
void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
void PABilinearFormExtension::MultInternal(const Vector &x, Vector &y,
|
||||
const bool useAbs) const
|
||||
{
|
||||
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
|
||||
|
||||
@@ -558,11 +559,13 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (integrators[i]->Patchwise())
|
||||
{
|
||||
MFEM_ASSERT(!useAbs, "AbsMult not implemented with NURBS!")
|
||||
integrators[i]->AddMultNURBSPA(x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
integrators[i]->AddMultPA(x, y);
|
||||
if (useAbs) { integrators[i]->AddAbsMultPA(x, y); }
|
||||
else { integrators[i]->AddMultPA(x, y); }
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -571,14 +574,30 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
if (iSz)
|
||||
{
|
||||
Array<Array<int>*> &elem_markers = *a->GetDBFI_Marker();
|
||||
elem_restrict->Mult(x, localX);
|
||||
auto H1elem_restrict =
|
||||
dynamic_cast<const ElementRestriction*>(elem_restrict);
|
||||
if (H1elem_restrict && useAbs)
|
||||
{
|
||||
H1elem_restrict->AbsMult(x, localX);
|
||||
}
|
||||
else
|
||||
{
|
||||
elem_restrict->Mult(x, localX);
|
||||
}
|
||||
localY = 0.0;
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
AddMultWithMarkers(*integrators[i], localX, elem_markers[i],
|
||||
elem_attributes, false, localY);
|
||||
elem_attributes, false, localY, useAbs);
|
||||
}
|
||||
if (H1elem_restrict && useAbs)
|
||||
{
|
||||
H1elem_restrict->AbsMultTranspose(localY, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
}
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -590,6 +609,7 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
const int iFISz = intFaceIntegrators.Size();
|
||||
if (int_face_restrict_lex && iFISz>0)
|
||||
{
|
||||
MFEM_ASSERT(!useAbs, "AbsMult not implemented for face integrators!")
|
||||
// When assembling interior face integrators for DG spaces, we need to
|
||||
// exchange the face-neighbor information. This happens inside member
|
||||
// functions of the 'int_face_restrict_lex'. To avoid repeated calls to
|
||||
@@ -651,6 +671,7 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
const bool has_bdr_integs = (n_bdr_face_integs > 0 || n_bdr_integs > 0);
|
||||
if (bdr_face_restrict_lex && has_bdr_integs)
|
||||
{
|
||||
MFEM_ASSERT(!useAbs, "AbsMult not implemented for bdr integrators!")
|
||||
Array<Array<int>*> &bdr_markers = *a->GetBBFI_Marker();
|
||||
Array<Array<int>*> &bdr_face_markers = *a->GetBFBFI_Marker();
|
||||
bdr_face_restrict_lex->Mult(x, bdr_face_X);
|
||||
@@ -828,22 +849,39 @@ void PABilinearFormExtension::AddMultWithMarkers(
|
||||
const Array<int> *markers,
|
||||
const Array<int> &attributes,
|
||||
const bool transpose,
|
||||
Vector &y) const
|
||||
Vector &y,
|
||||
const bool useAbs) const
|
||||
{
|
||||
if (markers)
|
||||
{
|
||||
tmp_evec.SetSize(y.Size());
|
||||
tmp_evec = 0.0;
|
||||
if (transpose) { integ.AddMultTransposePA(x, tmp_evec); }
|
||||
else { integ.AddMultPA(x, tmp_evec); }
|
||||
if (useAbs)
|
||||
{
|
||||
if (transpose) { integ.AddAbsMultTransposePA(x, tmp_evec); }
|
||||
else { integ.AddAbsMultPA(x, tmp_evec); }
|
||||
}
|
||||
else
|
||||
{
|
||||
if (transpose) { integ.AddMultTransposePA(x, tmp_evec); }
|
||||
else { integ.AddMultPA(x, tmp_evec); }
|
||||
}
|
||||
const int ne = attributes.Size();
|
||||
const int nd = x.Size() / ne;
|
||||
AddWithMarkers_(ne, nd, tmp_evec, *markers, attributes, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
if (transpose) { integ.AddMultTransposePA(x, y); }
|
||||
else { integ.AddMultPA(x, y); }
|
||||
if (useAbs)
|
||||
{
|
||||
if (transpose) { integ.AddAbsMultTransposePA(x, y); }
|
||||
else { integ.AddAbsMultPA(x, y); }
|
||||
}
|
||||
else
|
||||
{
|
||||
if (transpose) { integ.AddMultTransposePA(x, y); }
|
||||
else { integ.AddMultPA(x, y); }
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1010,8 +1048,13 @@ void EABilinearFormExtension::Assemble()
|
||||
}
|
||||
}
|
||||
|
||||
void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
void EABilinearFormExtension::MultInternal(const Vector &x, Vector &y,
|
||||
const bool useTranspose,
|
||||
const bool useAbs) const
|
||||
{
|
||||
auto elemRest = dynamic_cast<const ElementRestriction*>(elem_restrict);
|
||||
MFEM_ASSERT(useAbs?(elemRest!=nullptr):true,
|
||||
"elem_restrict is not ElementRestriction*!")
|
||||
// Apply the Element Restriction
|
||||
const bool useRestrict = !DeviceCanUseCeed() && elem_restrict;
|
||||
if (!useRestrict)
|
||||
@@ -1019,6 +1062,11 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
y.UseDevice(true); // typically this is a large vector, so store on device
|
||||
y = 0.0;
|
||||
}
|
||||
else if (useAbs)
|
||||
{
|
||||
elemRest->AbsMult(x, localX);
|
||||
localY = 0.0;
|
||||
}
|
||||
else
|
||||
{
|
||||
elem_restrict->Mult(x, localX);
|
||||
@@ -1026,25 +1074,55 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
}
|
||||
// Apply the Element Matrices
|
||||
{
|
||||
Vector abs_ea_data;
|
||||
if (useAbs)
|
||||
{
|
||||
abs_ea_data = ea_data;
|
||||
abs_ea_data.Abs();
|
||||
}
|
||||
const int NDOFS = elemDofs;
|
||||
auto X = Reshape(useRestrict?localX.Read():x.Read(), NDOFS, ne);
|
||||
auto Y = Reshape(useRestrict?localY.ReadWrite():y.ReadWrite(), NDOFS, ne);
|
||||
auto A = Reshape(ea_data.Read(), NDOFS, NDOFS, ne);
|
||||
mfem::forall(ne*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
auto A = Reshape(useAbs?abs_ea_data.Read():ea_data.Read(), NDOFS, NDOFS, ne);
|
||||
if (!useTranspose)
|
||||
{
|
||||
const int e = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
mfem::forall(ne*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
{
|
||||
res += A(i, j, e)*X(i, e);
|
||||
}
|
||||
Y(j, e) += res;
|
||||
});
|
||||
const int e = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A(i, j, e)*X(i, e);
|
||||
}
|
||||
Y(j, e) += res;
|
||||
});
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem::forall(ne*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
{
|
||||
const int e = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A(j, i, e)*X(i, e);
|
||||
}
|
||||
Y(j, e) += res;
|
||||
});
|
||||
}
|
||||
// Apply the Element Restriction transposed
|
||||
if (useRestrict)
|
||||
{
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
if (useAbs)
|
||||
{
|
||||
elemRest->AbsMultTranspose(localY, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1053,6 +1131,7 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
const int iFISz = intFaceIntegrators.Size();
|
||||
if (int_face_restrict_lex && iFISz>0)
|
||||
{
|
||||
MFEM_VERIFY(!useAbs, "AbsMult not implemented with Face integrators!")
|
||||
// Apply the Interior Face Restriction
|
||||
int_face_restrict_lex->Mult(x, int_face_X);
|
||||
if (int_face_X.Size()>0)
|
||||
@@ -1064,7 +1143,65 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
auto Y = Reshape(int_face_Y.ReadWrite(), NDOFS, 2, nf_int);
|
||||
if (!factorize_face_terms)
|
||||
{
|
||||
auto A_int = Reshape(ea_data_int.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
Vector abs_ea_data_int(ea_data_int.Size());
|
||||
if (useAbs)
|
||||
{
|
||||
abs_ea_data_int = ea_data_int;
|
||||
abs_ea_data_int.Abs();
|
||||
}
|
||||
auto A_int = Reshape(useAbs?abs_ea_data_int.Read():ea_data_int.Read(),
|
||||
NDOFS, NDOFS, 2, nf_int);
|
||||
if (!useTranspose)
|
||||
{
|
||||
mfem::forall(nf_int*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(i, j, 0, f)*X(i, 0, f);
|
||||
}
|
||||
Y(j, 0, f) += res;
|
||||
res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(i, j, 1, f)*X(i, 1, f);
|
||||
}
|
||||
Y(j, 1, f) += res;
|
||||
});
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem::forall(nf_int*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(j, i, 0, f)*X(i, 0, f);
|
||||
}
|
||||
Y(j, 0, f) += res;
|
||||
res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(j, i, 1, f)*X(i, 1, f);
|
||||
}
|
||||
Y(j, 1, f) += res;
|
||||
});
|
||||
}
|
||||
}
|
||||
Vector abs_ea_data_ext(ea_data_ext.Size());
|
||||
if (useAbs)
|
||||
{
|
||||
abs_ea_data_ext = ea_data_ext;
|
||||
abs_ea_data_ext.Abs();
|
||||
}
|
||||
auto A_ext = Reshape(useAbs?abs_ea_data_ext.Read():ea_data_ext.Read(),
|
||||
NDOFS, NDOFS, 2, nf_int);
|
||||
if (!useTranspose)
|
||||
{
|
||||
mfem::forall(nf_int*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
@@ -1072,35 +1209,37 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(i, j, 0, f)*X(i, 0, f);
|
||||
res += A_ext(i, j, 0, f)*X(i, 0, f);
|
||||
}
|
||||
Y(j, 0, f) += res;
|
||||
Y(j, 1, f) += res;
|
||||
res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(i, j, 1, f)*X(i, 1, f);
|
||||
res += A_ext(i, j, 1, f)*X(i, 1, f);
|
||||
}
|
||||
Y(j, 1, f) += res;
|
||||
Y(j, 0, f) += res;
|
||||
});
|
||||
}
|
||||
auto A_ext = Reshape(ea_data_ext.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
mfem::forall(nf_int*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
else
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
mfem::forall(nf_int*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
{
|
||||
res += A_ext(i, j, 0, f)*X(i, 0, f);
|
||||
}
|
||||
Y(j, 1, f) += res;
|
||||
res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_ext(i, j, 1, f)*X(i, 1, f);
|
||||
}
|
||||
Y(j, 0, f) += res;
|
||||
});
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_ext(j, i, 1, f)*X(i, 0, f);
|
||||
}
|
||||
Y(j, 1, f) += res;
|
||||
res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_ext(j, i, 0, f)*X(i, 1, f);
|
||||
}
|
||||
Y(j, 0, f) += res;
|
||||
});
|
||||
}
|
||||
// Apply the Interior Face Restriction transposed
|
||||
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
|
||||
}
|
||||
@@ -1109,7 +1248,9 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
// Treatment of boundary faces
|
||||
if (!factorize_face_terms && bdr_face_restrict_lex && ea_data_bdr.Size() > 0)
|
||||
{
|
||||
MFEM_ASSERT(!useAbs, "AbsMult not implemented with Face integrators!")
|
||||
// Apply the Boundary Face Restriction
|
||||
// TODO: AbsMult if needed
|
||||
bdr_face_restrict_lex->Mult(x, bdr_face_X);
|
||||
bdr_face_Y = 0.0;
|
||||
// Apply the boundary face matrices
|
||||
@@ -1117,141 +1258,38 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
auto X = Reshape(bdr_face_X.Read(), NDOFS, nf_bdr);
|
||||
auto Y = Reshape(bdr_face_Y.ReadWrite(), NDOFS, nf_bdr);
|
||||
auto A = Reshape(ea_data_bdr.Read(), NDOFS, NDOFS, nf_bdr);
|
||||
mfem::forall(nf_bdr*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
if (!useTranspose)
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A(i, j, f)*X(i, f);
|
||||
}
|
||||
Y(j, f) += res;
|
||||
});
|
||||
// Apply the Boundary Face Restriction transposed
|
||||
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
|
||||
}
|
||||
}
|
||||
|
||||
void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
// Apply the Element Restriction
|
||||
const bool useRestrict = !DeviceCanUseCeed() && elem_restrict;
|
||||
if (!useRestrict)
|
||||
{
|
||||
y.UseDevice(true); // typically this is a large vector, so store on device
|
||||
y = 0.0;
|
||||
}
|
||||
else
|
||||
{
|
||||
elem_restrict->Mult(x, localX);
|
||||
localY = 0.0;
|
||||
}
|
||||
// Apply the Element Matrices transposed
|
||||
{
|
||||
const int NDOFS = elemDofs;
|
||||
auto X = Reshape(useRestrict?localX.Read():x.Read(), NDOFS, ne);
|
||||
auto Y = Reshape(useRestrict?localY.ReadWrite():y.ReadWrite(), NDOFS, ne);
|
||||
auto A = Reshape(ea_data.Read(), NDOFS, NDOFS, ne);
|
||||
mfem::forall(ne*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
{
|
||||
const int e = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A(j, i, e)*X(i, e);
|
||||
}
|
||||
Y(j, e) += res;
|
||||
});
|
||||
// Apply the Element Restriction transposed
|
||||
if (useRestrict)
|
||||
{
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
}
|
||||
}
|
||||
|
||||
// Treatment of interior faces
|
||||
Array<BilinearFormIntegrator*> &intFaceIntegrators = *a->GetFBFI();
|
||||
const int iFISz = intFaceIntegrators.Size();
|
||||
if (int_face_restrict_lex && iFISz>0)
|
||||
{
|
||||
// Apply the Interior Face Restriction
|
||||
int_face_restrict_lex->Mult(x, int_face_X);
|
||||
if (int_face_X.Size()>0)
|
||||
{
|
||||
int_face_Y = 0.0;
|
||||
// Apply the interior face matrices transposed
|
||||
const int NDOFS = faceDofs;
|
||||
auto X = Reshape(int_face_X.Read(), NDOFS, 2, nf_int);
|
||||
auto Y = Reshape(int_face_Y.ReadWrite(), NDOFS, 2, nf_int);
|
||||
if (!factorize_face_terms)
|
||||
{
|
||||
auto A_int = Reshape(ea_data_int.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
mfem::forall(nf_int*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(j, i, 0, f)*X(i, 0, f);
|
||||
}
|
||||
Y(j, 0, f) += res;
|
||||
res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_int(j, i, 1, f)*X(i, 1, f);
|
||||
}
|
||||
Y(j, 1, f) += res;
|
||||
});
|
||||
}
|
||||
auto A_ext = Reshape(ea_data_ext.Read(), NDOFS, NDOFS, 2, nf_int);
|
||||
mfem::forall(nf_int*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
// TODO: useAbs
|
||||
mfem::forall(nf_bdr*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_ext(j, i, 1, f)*X(i, 0, f);
|
||||
res += A(i, j, f)*X(i, f);
|
||||
}
|
||||
Y(j, 1, f) += res;
|
||||
res = 0.0;
|
||||
Y(j, f) += res;
|
||||
});
|
||||
}
|
||||
else
|
||||
{
|
||||
// TODO: useAbs
|
||||
mfem::forall(nf_bdr*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A_ext(j, i, 0, f)*X(i, 1, f);
|
||||
res += A(j, i, f)*X(i, f);
|
||||
}
|
||||
Y(j, 0, f) += res;
|
||||
Y(j, f) += res;
|
||||
});
|
||||
// Apply the Interior Face Restriction transposed
|
||||
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
|
||||
}
|
||||
}
|
||||
|
||||
// Treatment of boundary faces
|
||||
if (!factorize_face_terms && bdr_face_restrict_lex && ea_data_bdr.Size() > 0)
|
||||
{
|
||||
// Apply the Boundary Face Restriction
|
||||
bdr_face_restrict_lex->Mult(x, bdr_face_X);
|
||||
bdr_face_Y = 0.0;
|
||||
// Apply the boundary face matrices transposed
|
||||
const int NDOFS = faceDofs;
|
||||
auto X = Reshape(bdr_face_X.Read(), NDOFS, nf_bdr);
|
||||
auto Y = Reshape(bdr_face_Y.ReadWrite(), NDOFS, nf_bdr);
|
||||
auto A = Reshape(ea_data_bdr.Read(), NDOFS, NDOFS, nf_bdr);
|
||||
mfem::forall(nf_bdr*NDOFS, [=] MFEM_HOST_DEVICE (int glob_j)
|
||||
{
|
||||
const int f = glob_j/NDOFS;
|
||||
const int j = glob_j%NDOFS;
|
||||
real_t res = 0.0;
|
||||
for (int i = 0; i < NDOFS; i++)
|
||||
{
|
||||
res += A(j, i, f)*X(i, f);
|
||||
}
|
||||
Y(j, f) += res;
|
||||
});
|
||||
// Apply the Boundary Face Restriction transposed
|
||||
// TODO: AbsMultTranspose if needed
|
||||
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
|
||||
}
|
||||
}
|
||||
@@ -1911,7 +1949,7 @@ void PAMixedBilinearFormExtension::AssembleDiagonal_ADAt(const Vector &D,
|
||||
dynamic_cast<const ElementRestriction*>(elem_restrict_trial);
|
||||
if (H1elem_restrict_trial)
|
||||
{
|
||||
H1elem_restrict_trial->MultUnsigned(D, localTrial);
|
||||
H1elem_restrict_trial->AbsMult(D, localTrial);
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -1937,7 +1975,7 @@ void PAMixedBilinearFormExtension::AssembleDiagonal_ADAt(const Vector &D,
|
||||
dynamic_cast<const ElementRestriction*>(elem_restrict_test);
|
||||
if (H1elem_restrict_test)
|
||||
{
|
||||
H1elem_restrict_test->MultTransposeUnsigned(localTest, diag);
|
||||
H1elem_restrict_test->AbsMultTranspose(localTest, diag);
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -1993,7 +2031,7 @@ void PADiscreteLinearOperatorExtension::Assemble()
|
||||
dynamic_cast<const ElementRestriction*>(elem_restrict_test);
|
||||
if (elem_restrict)
|
||||
{
|
||||
elem_restrict->MultTransposeUnsigned(ones, test_multiplicity);
|
||||
elem_restrict->AbsMultTranspose(ones, test_multiplicity);
|
||||
}
|
||||
else
|
||||
{
|
||||
|
||||
@@ -91,12 +91,17 @@ public:
|
||||
Vector &x, Vector &b,
|
||||
OperatorHandle &A, Vector &X, Vector &B,
|
||||
int copy_interior = 0) override;
|
||||
void Mult(const Vector &x, Vector &y) const override;
|
||||
void Mult(const Vector &x, Vector &y) const override
|
||||
{ MultInternal(x,y); }
|
||||
void AbsMult(const Vector &x, Vector &y) const override
|
||||
{ MultInternal(x,y, true); }
|
||||
void MultTranspose(const Vector &x, Vector &y) const override;
|
||||
void Update() override;
|
||||
|
||||
protected:
|
||||
void SetupRestrictionOperators(const L2FaceValues m);
|
||||
void MultInternal(const Vector &x, Vector &y,
|
||||
const bool useAbs = false) const;
|
||||
|
||||
/// @brief Accumulate the action (or transpose) of the integrator on @a x
|
||||
/// into @a y, taking into account the (possibly null) @a markers array.
|
||||
@@ -110,12 +115,14 @@ protected:
|
||||
/// @param attributes Array of element or boundary element attributes.
|
||||
/// @param transpose Compute the action or transpose of the integrator .
|
||||
/// @param y Output E-vector
|
||||
/// @param useAbs Apply absolute-value operator
|
||||
void AddMultWithMarkers(const BilinearFormIntegrator &integ,
|
||||
const Vector &x,
|
||||
const Array<int> *markers,
|
||||
const Array<int> &attributes,
|
||||
const bool transpose,
|
||||
Vector &y) const;
|
||||
Vector &y,
|
||||
const bool useAbs = false) const;
|
||||
|
||||
/// @brief Performs the same function as AddMultWithMarkers, but takes as
|
||||
/// input and output face normal derivatives.
|
||||
@@ -152,8 +159,15 @@ public:
|
||||
EABilinearFormExtension(BilinearForm *form);
|
||||
|
||||
void Assemble() override;
|
||||
void Mult(const Vector &x, Vector &y) const override;
|
||||
void MultTranspose(const Vector &x, Vector &y) const override;
|
||||
|
||||
void Mult(const Vector &x, Vector &y) const override
|
||||
{ MultInternal(x, y, false); }
|
||||
void AbsMult(const Vector &x, Vector &y) const override
|
||||
{ MultInternal(x, y, false, true); }
|
||||
void MultTranspose(const Vector &x, Vector &y) const override
|
||||
{ MultInternal(x, y, true); }
|
||||
void AbsMultTranspose(const Vector &x, Vector &y) const override
|
||||
{ MultInternal(x, y, true, true); }
|
||||
|
||||
/// @brief Populates @a element_matrices with the element matrices.
|
||||
///
|
||||
@@ -165,6 +179,10 @@ public:
|
||||
void GetElementMatrices(DenseTensor &element_matrices,
|
||||
ElementDofOrdering ordering,
|
||||
bool add_bdr);
|
||||
|
||||
// This method needs to be public due to 'nvcc' restriction.
|
||||
void MultInternal(const Vector &x, Vector &y, const bool useTranspose,
|
||||
const bool useAbs = false) const;
|
||||
};
|
||||
|
||||
/// Data and methods for fully-assembled bilinear forms
|
||||
|
||||
@@ -121,6 +121,12 @@ void BilinearFormIntegrator::AddMultPA(const Vector &, Vector &) const
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AddAbsMultPA(const Vector &, Vector &) const
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator:AddAbsMultPA:(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AddMultNURBSPA(const Vector &, Vector &) const
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AddMultNURBSPA(...)\n"
|
||||
@@ -133,6 +139,13 @@ void BilinearFormIntegrator::AddMultTransposePA(const Vector &, Vector &) const
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AddAbsMultTransposePA(const Vector &,
|
||||
Vector &) const
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AddAbsMultTransposePA(...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::AssembleMF(const FiniteElementSpace &fes)
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator::AssembleMF(...)\n"
|
||||
@@ -418,6 +431,14 @@ void SumIntegrator::AddMultPA(const Vector& x, Vector& y) const
|
||||
}
|
||||
}
|
||||
|
||||
void SumIntegrator::AddAbsMultPA(const Vector& x, Vector& y) const
|
||||
{
|
||||
for (int i = 0; i < integrators.Size(); i++)
|
||||
{
|
||||
integrators[i]->AddAbsMultPA(x, y);
|
||||
}
|
||||
}
|
||||
|
||||
void SumIntegrator::AddMultTransposePA(const Vector &x, Vector &y) const
|
||||
{
|
||||
for (int i = 0; i < integrators.Size(); i++)
|
||||
@@ -426,6 +447,14 @@ void SumIntegrator::AddMultTransposePA(const Vector &x, Vector &y) const
|
||||
}
|
||||
}
|
||||
|
||||
void SumIntegrator::AddAbsMultTransposePA(const Vector &x, Vector &y) const
|
||||
{
|
||||
for (int i = 0; i < integrators.Size(); i++)
|
||||
{
|
||||
integrators[i]->AddAbsMultTransposePA(x, y);
|
||||
}
|
||||
}
|
||||
|
||||
void SumIntegrator::AssembleMF(const FiniteElementSpace &fes)
|
||||
{
|
||||
for (int i = 0; i < integrators.Size(); i++)
|
||||
|
||||
@@ -78,6 +78,8 @@ public:
|
||||
called. */
|
||||
void AddMultPA(const Vector &x, Vector &y) const override;
|
||||
|
||||
virtual void AddAbsMultPA(const Vector &x, Vector &y) const;
|
||||
|
||||
/// Method for partially assembled action on NURBS patches.
|
||||
virtual void AddMultNURBSPA(const Vector&x, Vector&y) const;
|
||||
|
||||
@@ -90,6 +92,8 @@ public:
|
||||
called. */
|
||||
virtual void AddMultTransposePA(const Vector &x, Vector &y) const;
|
||||
|
||||
virtual void AddAbsMultTransposePA(const Vector &x, Vector &y) const;
|
||||
|
||||
/// Method defining element assembly.
|
||||
/** The result of the element assembly is added to the @a emat Vector if
|
||||
@a add is true. Otherwise, if @a add is false, we set @a emat. */
|
||||
@@ -496,8 +500,12 @@ public:
|
||||
|
||||
void AddMultTransposePA(const Vector &x, Vector &y) const override;
|
||||
|
||||
void AddAbsMultTransposePA(const Vector &x, Vector &y) const override;
|
||||
|
||||
void AddMultPA(const Vector& x, Vector& y) const override;
|
||||
|
||||
void AddAbsMultPA(const Vector& x, Vector& y) const override;
|
||||
|
||||
void AssembleMF(const FiniteElementSpace &fes) override;
|
||||
|
||||
void AddMultMF(const Vector &x, Vector &y) const override;
|
||||
@@ -2320,8 +2328,12 @@ public:
|
||||
|
||||
void AddMultPA(const Vector&, Vector&) const override;
|
||||
|
||||
void AddAbsMultPA(const Vector&, Vector&) const override;
|
||||
|
||||
void AddMultTransposePA(const Vector&, Vector&) const override;
|
||||
|
||||
void AddAbsMultTransposePA(const Vector&, Vector&) const override;
|
||||
|
||||
void AddMultNURBSPA(const Vector&, Vector&) const override;
|
||||
|
||||
void AddMultPatchPA(const int patch, const Vector &x, Vector &y) const;
|
||||
@@ -2419,8 +2431,12 @@ public:
|
||||
|
||||
void AddMultPA(const Vector&, Vector&) const override;
|
||||
|
||||
void AddAbsMultPA(const Vector&, Vector&) const override;
|
||||
|
||||
void AddMultTransposePA(const Vector&, Vector&) const override;
|
||||
|
||||
void AddAbsMultTransposePA(const Vector&, Vector&) const override;
|
||||
|
||||
static const IntegrationRule &GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
const ElementTransformation &Trans);
|
||||
@@ -2816,6 +2832,7 @@ public:
|
||||
using BilinearFormIntegrator::AssemblePA;
|
||||
void AssemblePA(const FiniteElementSpace &fes) override;
|
||||
void AddMultPA(const Vector &x, Vector &y) const override;
|
||||
void AddAbsMultPA(const Vector &x, Vector &y) const override;
|
||||
void AssembleDiagonalPA(Vector& diag) override;
|
||||
|
||||
const Coefficient *GetCoefficient() const { return Q; }
|
||||
@@ -2933,6 +2950,7 @@ public:
|
||||
void AssemblePA(const FiniteElementSpace &trial_fes,
|
||||
const FiniteElementSpace &test_fes) override;
|
||||
void AddMultPA(const Vector &x, Vector &y) const override;
|
||||
void AddAbsMultPA(const Vector &x, Vector &y) const override;
|
||||
void AddMultTransposePA(const Vector &x, Vector &y) const override;
|
||||
void AssembleDiagonalPA(Vector& diag) override;
|
||||
void AssembleEA(const FiniteElementSpace &fes, Vector &emat,
|
||||
|
||||
+715
@@ -0,0 +1,715 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
// Implementation of bounds
|
||||
|
||||
#include "bounds.hpp"
|
||||
|
||||
#include <limits>
|
||||
#include <cstring>
|
||||
#include <string>
|
||||
#include <cmath>
|
||||
#include <iostream>
|
||||
#include <algorithm>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
using namespace std;
|
||||
|
||||
void PLBound::Setup(const int nb_i, const int ncp_i,
|
||||
const int b_type_i, const int cp_type_i,
|
||||
const real_t tol_i)
|
||||
{
|
||||
MFEM_VERIFY(b_type_i >= 0 && b_type_i <= 2, "Bases not supported. "
|
||||
"Please read class description to see supported types.");
|
||||
MFEM_VERIFY(cp_type_i == 0 || cp_type_i == 1,
|
||||
"Control point type not supported. Please read class "
|
||||
"description to see supported types.");
|
||||
nb = nb_i;
|
||||
ncp = ncp_i;
|
||||
b_type = b_type_i;
|
||||
cp_type = cp_type_i;
|
||||
tol = tol_i;
|
||||
lbound.SetSize(nb, ncp);
|
||||
ubound.SetSize(nb, ncp);
|
||||
nodes.SetSize(nb);
|
||||
weights.SetSize(nb);
|
||||
control_points.SetSize(ncp);
|
||||
|
||||
auto scalenodes = [](const Vector &in, const real_t a, const real_t b) -> Vector
|
||||
{
|
||||
Vector outVec(in.Size());
|
||||
real_t maxv = in.Max();
|
||||
real_t minv = in.Min();
|
||||
for (int i = 0; i < in.Size(); i++)
|
||||
{
|
||||
outVec(i) = a + (b-a)*(in(i)-minv)/(maxv-minv);
|
||||
}
|
||||
return outVec;
|
||||
};
|
||||
MFEM_VERIFY(ncp >= 2,"At least 2 control points are required.");
|
||||
|
||||
if (cp_type == 0) // GL + End Point
|
||||
{
|
||||
control_points(0) = 0.0;
|
||||
control_points(ncp-1) = 1.0;
|
||||
if (ncp > 2)
|
||||
{
|
||||
const real_t *x = poly1d.GetPoints(ncp-3, 0);
|
||||
MFEM_VERIFY(x, "Error in getting points.");
|
||||
for (int i = 0; i < ncp-2; i++)
|
||||
{
|
||||
control_points(i+1) = x[i];
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (cp_type == 1) // Chebyshev
|
||||
{
|
||||
auto GetChebyshevNodes = [](int n) -> Vector
|
||||
{
|
||||
Vector cheb(n);
|
||||
for (int i = 0; i < n; ++i)
|
||||
{
|
||||
cheb(i) = -cos(M_PI * (static_cast<real_t>(i) / (n - 1)));
|
||||
}
|
||||
return cheb;
|
||||
};
|
||||
control_points = GetChebyshevNodes(ncp);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Unsupported interval points. Use [0,1].\n");
|
||||
}
|
||||
control_points = scalenodes(control_points, 0.0, 1.0); // rescale to [0,1]
|
||||
|
||||
Poly_1D::Basis &basis1d(poly1d.GetBasis(nb-1, b_type));
|
||||
|
||||
// Initialize bounds
|
||||
lbound = 0.0;
|
||||
ubound = 0.0;
|
||||
|
||||
Vector bmv(nb), bpv(nb), bv(nb); // basis values
|
||||
Vector bdmv(nb), bdpv(nb), bdv(nb); // basis derivative values
|
||||
Vector vals(3);
|
||||
|
||||
// See Section 3.1.1 of https://arxiv.org/pdf/2501.12349 for explanation of
|
||||
// procedure below.
|
||||
for (int j = 0; j < ncp; j++)
|
||||
{
|
||||
real_t x = control_points(j);
|
||||
real_t xm = x;
|
||||
if (j != 0)
|
||||
{
|
||||
xm = 0.5*(control_points(j-1)+control_points(j));
|
||||
}
|
||||
real_t xp = x;
|
||||
if (j != ncp-1)
|
||||
{
|
||||
xp = 0.5*(control_points(j)+control_points(j+1));
|
||||
}
|
||||
basis1d.Eval(xm, bmv, bdmv);
|
||||
basis1d.Eval(xp, bpv, bdpv);
|
||||
basis1d.Eval(x, bv);
|
||||
real_t dm = x-xm;
|
||||
real_t dp = x-xp;
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
if (j == 0)
|
||||
{
|
||||
lbound(i, j) = bv(i);
|
||||
ubound(i, j) = bv(i);
|
||||
}
|
||||
else if (j == ncp-1)
|
||||
{
|
||||
lbound(i, j) = bv(i);
|
||||
ubound(i, j) = bv(i);
|
||||
}
|
||||
else
|
||||
{
|
||||
vals(0) = bv(i);
|
||||
vals(1) = bmv(i) + dm*bdmv(i);
|
||||
vals(2) = bpv(i) + dp*bdpv(i);
|
||||
lbound(i, j) = vals.Min()-tol; // tolerance for good measure
|
||||
ubound(i, j) = vals.Max()+tol; // tolerance for good measure
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
IntegrationRule irule(nb);
|
||||
if (b_type == 0)
|
||||
{
|
||||
QuadratureFunctions1D::GaussLegendre(nb, &irule);
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
weights(i) = irule.IntPoint(i).weight;
|
||||
nodes(i) = irule.IntPoint(i).x;
|
||||
}
|
||||
}
|
||||
else if (b_type == 1)
|
||||
{
|
||||
QuadratureFunctions1D::GaussLobatto(nb, &irule);
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
weights(i) = irule.IntPoint(i).weight;
|
||||
nodes(i) = irule.IntPoint(i).x;
|
||||
}
|
||||
}
|
||||
else if (b_type == 2)
|
||||
{
|
||||
QuadratureFunctions1D::ClosedUniform(nb, &irule);
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
weights(i) = irule.IntPoint(i).weight;
|
||||
nodes(i) = irule.IntPoint(i).x;
|
||||
}
|
||||
}
|
||||
|
||||
if (b_type == 2)
|
||||
{
|
||||
nodes_int.SetSize(nb);
|
||||
weights_int.SetSize(nb);
|
||||
IntegrationRule irule_int(nb);
|
||||
{
|
||||
QuadratureFunctions1D::GaussLobatto(nb, &irule_int);
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
weights_int(i) = irule_int.IntPoint(i).weight;
|
||||
nodes_int(i) = irule_int.IntPoint(i).x;
|
||||
}
|
||||
}
|
||||
|
||||
SetupBernsteinBasisMat(basisMatNodes, nodes);
|
||||
// Setup memory for lu factors
|
||||
basisMatLU = basisMatNodes;
|
||||
lu_ip.SetSize(nb);
|
||||
// Compute lu factors
|
||||
LUFactors lu(basisMatLU.GetData(), lu_ip.GetData());
|
||||
bool factor = lu.Factor(nb);
|
||||
MFEM_VERIFY(factor,"Failure in LU factorization in PLBound.");
|
||||
|
||||
// Setup the Bernstein basis matrix for the GLL integration points. This
|
||||
// is used to compute linear fit.
|
||||
SetupBernsteinBasisMat(basisMatInt, nodes_int);
|
||||
}
|
||||
else
|
||||
{
|
||||
nodes_int.SetDataAndSize(nodes.GetData(), nb);
|
||||
weights_int.SetDataAndSize(weights.GetData(), nb);
|
||||
}
|
||||
}
|
||||
|
||||
PLBound::PLBound(FiniteElementSpace *fes, int ncp_i, int cp_type_i)
|
||||
{
|
||||
MFEM_VERIFY(!fes->IsVariableOrder(),
|
||||
"Variable order meshes not yet supported.");
|
||||
const char *name = fes->FEColl()->Name();
|
||||
string cname = name;
|
||||
|
||||
cp_type = cp_type_i;
|
||||
b_type = BasisType::Invalid;
|
||||
nb = fes->GetMaxElementOrder()+1;
|
||||
tol = 0.0;
|
||||
|
||||
int minncp = 2;
|
||||
if (nb > 12)
|
||||
{
|
||||
minncp = 2*nb;
|
||||
}
|
||||
else if (!strncmp(name, "H1_", 3) && strncmp(name, "H1_Trace_", 9))
|
||||
{
|
||||
// H1 GLL
|
||||
b_type = BasisType::GaussLobatto;
|
||||
minncp = min_ncp_gll_x[cp_type][nb-2];
|
||||
}
|
||||
else if (!strncmp(name, "H1Pos_", 6) && strncmp(name, "H1Pos_Trace_", 12))
|
||||
{
|
||||
// H1 Positive
|
||||
b_type = BasisType::Positive;
|
||||
minncp = min_ncp_pos_x[cp_type][nb-2];
|
||||
}
|
||||
else if (!strncmp(name, "L2_", 3) && strncmp(name, "L2_T", 4))
|
||||
{
|
||||
// L2 Gauss-Legendre
|
||||
b_type = BasisType::GaussLegendre;
|
||||
minncp = min_ncp_gl_x[cp_type][nb-2];
|
||||
}
|
||||
else if (!strncmp(name, "L2_T1", 5))
|
||||
{
|
||||
// L2 GLL
|
||||
b_type = BasisType::GaussLobatto;
|
||||
minncp = min_ncp_gll_x[cp_type][nb-2];
|
||||
}
|
||||
else if (!strncmp(name, "L2_T2", 5))
|
||||
{
|
||||
// L2 Positive
|
||||
b_type = BasisType::Positive;
|
||||
minncp = min_ncp_pos_x[cp_type][nb-2];
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Only H1 GLL/Positive & L2 GL/GLL/Positive bases supported.");
|
||||
}
|
||||
|
||||
ncp = std::max(minncp, ncp_i);
|
||||
|
||||
Setup(nb, ncp, b_type, cp_type, tol);
|
||||
}
|
||||
|
||||
void PLBound::Get1DBounds(Vector &coeff, Vector &intmin, Vector &intmax) const
|
||||
{
|
||||
real_t x,w;
|
||||
intmin.SetSize(ncp);
|
||||
intmax.SetSize(ncp);
|
||||
intmin = 0.0;
|
||||
intmax = 0.0;
|
||||
Vector coeffm(nb);
|
||||
coeffm = 0.0;
|
||||
|
||||
real_t a0 = 0.0;
|
||||
real_t a1 = 0.0;
|
||||
|
||||
Vector nodal_vals, nodal_integ_vals;
|
||||
if (b_type == 2) // compute values at equispaced nodes and GLL nodes
|
||||
{
|
||||
nodal_vals.SetSize(nb);
|
||||
nodal_integ_vals.SetSize(nb);
|
||||
Vector shape(nb);
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
basisMatNodes.GetRow(i, shape);
|
||||
nodal_vals(i) = shape*coeff;
|
||||
basisMatInt.GetRow(i, shape);
|
||||
nodal_integ_vals(i) = shape*coeff;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
nodal_vals.SetDataAndSize(coeff.GetData(), nb);
|
||||
nodal_integ_vals.SetDataAndSize(coeff.GetData(), nb);
|
||||
}
|
||||
|
||||
// compute L2 projection for linear bases: a0 + a1*x
|
||||
if (proj)
|
||||
{
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
x = 2.0*nodes_int(i)-1;
|
||||
w = 2.0*weights_int(i);
|
||||
a0 += 0.5*nodal_integ_vals(i)*w;
|
||||
a1 += 1.5*nodal_integ_vals(i)*w*x;
|
||||
}
|
||||
|
||||
// offset the linear fit from nodal values
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
x = 2.0*nodes(i)-1;
|
||||
coeffm(i) = nodal_vals(i) - a0 - a1*x;
|
||||
}
|
||||
|
||||
// compute coefficients for Bernstein
|
||||
if (b_type == 2)
|
||||
{
|
||||
LUFactors lu(basisMatLU.GetData(), lu_ip.GetData());
|
||||
lu.Solve(nb, 1, coeffm.GetData());
|
||||
}
|
||||
|
||||
// initialize the bounds to be the linear fit
|
||||
for (int j = 0; j < ncp; j++)
|
||||
{
|
||||
x = 2.0*control_points(j)-1;
|
||||
intmin(j) = a0 + a1*x;
|
||||
intmax(j) = intmin(j);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
coeffm.SetDataAndSize(coeff.GetData(), nb);
|
||||
}
|
||||
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
real_t c = coeffm(i);
|
||||
for (int j = 0; j < ncp; j++)
|
||||
{
|
||||
intmin(j) += min(lbound(i,j)*c, ubound(i,j)*c);
|
||||
intmax(j) += max(lbound(i,j)*c, ubound(i,j)*c);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void PLBound::Get2DBounds(Vector &coeff, Vector &intmin, Vector &intmax) const
|
||||
{
|
||||
intmin.SetSize(ncp*ncp);
|
||||
intmax.SetSize(ncp*ncp);
|
||||
intmin = 0.0;
|
||||
intmax = 0.0;
|
||||
Vector intminT(ncp*nb);
|
||||
Vector intmaxT(ncp*nb);
|
||||
// Get bounds for each row of the solution
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
Vector solcoeff(coeff.GetData()+i*nb, nb);
|
||||
Vector intminrow(intminT.GetData()+i*ncp, ncp);
|
||||
Vector intmaxrow(intmaxT.GetData()+i*ncp, ncp);
|
||||
Get1DBounds(solcoeff, intminrow, intmaxrow);
|
||||
}
|
||||
Vector intminT2 = intminT;
|
||||
|
||||
// Compute a0 and a1 for each column of nodes
|
||||
Vector a0V(ncp), a1V(ncp);
|
||||
a0V = 0.0;
|
||||
a1V = 0.0;
|
||||
real_t x,w,t;
|
||||
if (proj)
|
||||
{
|
||||
if (b_type == 2)
|
||||
{
|
||||
// Note: DenseMatrix uses column-major ordering so we will need to
|
||||
// transpose the matrix.
|
||||
DenseMatrix intminTM(intminT.GetData(), ncp, nb),
|
||||
intmaxTM(intmaxT.GetData(), ncp, nb),
|
||||
intmeanTM(ncp, nb);
|
||||
DenseMatrix minvalsM(nb, ncp), maxvalsM(nb, ncp), meanintvalsM(nb, ncp);
|
||||
MultABt(basisMatNodes, intminTM, minvalsM);
|
||||
MultABt(basisMatNodes, intmaxTM, maxvalsM);
|
||||
intmeanTM = intminTM;
|
||||
intmeanTM += intmaxTM;
|
||||
intmeanTM *= 0.5;
|
||||
MultABt(basisMatInt, intmeanTM, meanintvalsM);
|
||||
|
||||
// Compute the linear fit along each column and then offset it from
|
||||
// the bounds on the coefficient.
|
||||
// Note: Since Bernstein bases are positive, we can use the lower
|
||||
// bounds to compute the lower bounding polynomial and subtract the
|
||||
// linear fit before finding the Bernstein coefficients corresponding
|
||||
// to the perturbation. Same for upper bounds. If the bases were not
|
||||
// always positive, it is not yet clear if the perturbation
|
||||
// coefficients will be this straightforward to compute.
|
||||
for (int j = 0; j < ncp; j++) // row of interval points
|
||||
{
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
x = 2.0*nodes_int(i)-1; // x-coordinate
|
||||
w = 2.0*weights_int(i); // weight
|
||||
t = meanintvalsM(i,j);
|
||||
a0V(j) += 0.5*t*w;
|
||||
a1V(j) += 1.5*t*w*x;
|
||||
}
|
||||
// Offset linear fit
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
x = 2.0*nodes(i)-1; // x-coordinate
|
||||
minvalsM(i,j) -= a0V(j) + a1V(j)*x;
|
||||
maxvalsM(i,j) -= a0V(j) + a1V(j)*x;
|
||||
}
|
||||
// Compute Bernstein coefficients
|
||||
LUFactors lu(basisMatLU.GetData(), lu_ip.GetData());
|
||||
lu.Solve(nb, 1, minvalsM.GetColumn(j));
|
||||
lu.Solve(nb, 1, maxvalsM.GetColumn(j));
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
intminT(i*ncp+j) = minvalsM(i,j);
|
||||
intmaxT(i*ncp+j) = maxvalsM(i,j);
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int j = 0; j < nb; j++) // row of nodes
|
||||
{
|
||||
x = 2.0*nodes(j)-1; // x-coordinate
|
||||
w = 2.0*weights(j); // weight
|
||||
for (int i = 0; i < ncp; i++) // column of interval points
|
||||
{
|
||||
t = 0.5*(intminT(j*ncp+i)+intmaxT(j*ncp+i));
|
||||
a0V(i) += 0.5*t*w;
|
||||
a1V(i) += 1.5*t*w*x;
|
||||
}
|
||||
}
|
||||
// offset the linear fit from nodal values
|
||||
for (int j = 0; j < nb; j++) // row of nodes
|
||||
{
|
||||
x = 2.0*nodes(j)-1; // x-coordinate
|
||||
for (int i = 0; i < ncp; i++) // column of interval points
|
||||
{
|
||||
t = a0V(i) + a1V(i)*x;
|
||||
intminT(j*ncp+i) -= t;
|
||||
intmaxT(j*ncp+i) -= t;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Initialize bounds using a0 and a1 values
|
||||
for (int j = 0; j < ncp; j++) // row j
|
||||
{
|
||||
x = 2.0*control_points(j)-1;
|
||||
for (int i = 0; i < ncp; i++) // column i
|
||||
{
|
||||
intmin(j*ncp+i) = a0V(i) + a1V(i)*x;
|
||||
intmax(j*ncp+i) = intmin(j*ncp+i);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Compute bounds
|
||||
int id1 = 0, id2 = 0;
|
||||
Vector vals(4);
|
||||
for (int j = 0; j < nb; j++)
|
||||
{
|
||||
for (int i = 0; i < ncp; i++) // ith column
|
||||
{
|
||||
real_t w0 = intminT(id1++);
|
||||
real_t w1 = intmaxT(id2++);
|
||||
for (int k = 0; k < ncp; k++) // kth row
|
||||
{
|
||||
vals(0) = w0*lbound(j,k);
|
||||
vals(1) = w0*ubound(j,k);
|
||||
vals(2) = w1*lbound(j,k);
|
||||
vals(3) = w1*ubound(j,k);
|
||||
intmin(k*ncp+i) += vals.Min();
|
||||
intmax(k*ncp+i) += vals.Max();
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void PLBound::Get3DBounds(Vector &coeff, Vector &intmin, Vector &intmax) const
|
||||
{
|
||||
int nb2 = nb*nb,
|
||||
ncp2 = ncp*ncp,
|
||||
ncp3 = ncp*ncp*ncp;
|
||||
|
||||
intmin.SetSize(ncp3);
|
||||
intmax.SetSize(ncp3);
|
||||
intmin = 0.0;
|
||||
intmax = 0.0;
|
||||
Vector intminT(ncp2*nb);
|
||||
Vector intmaxT(ncp2*nb);
|
||||
|
||||
// Get bounds for each slice of the solution
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
Vector solcoeff(coeff.GetData()+i*nb2, nb2);
|
||||
Vector intminrow(intminT.GetData()+i*ncp2, ncp2);
|
||||
Vector intmaxrow(intmaxT.GetData()+i*ncp2, ncp2);
|
||||
Get2DBounds(solcoeff, intminrow, intmaxrow);
|
||||
}
|
||||
DenseMatrix intminTM(intminT.GetData(), ncp2, nb),
|
||||
intmaxTM(intmaxT.GetData(), ncp2, nb);
|
||||
|
||||
// Compute a0 and a1 for each tower of nodes
|
||||
Vector a0V(ncp2), a1V(ncp2);
|
||||
a0V = 0.0;
|
||||
a1V = 0.0;
|
||||
real_t x,w,t;
|
||||
if (proj)
|
||||
{
|
||||
if (b_type == 2) // Bernstein bases
|
||||
{
|
||||
// Compute the mean coefficients along each tower.
|
||||
for (int j = 0; j < ncp2; j++) // slice of interval points
|
||||
{
|
||||
Vector meanBounds(nb), minBounds(nb), maxBounds(nb);
|
||||
intminTM.GetRow(j, minBounds);
|
||||
intmaxTM.GetRow(j, maxBounds);
|
||||
for (int i = 0; i < nb; i++) // column of nodes
|
||||
{
|
||||
meanBounds(i) = 0.5*(minBounds(i)+maxBounds(i));
|
||||
}
|
||||
Vector meanNodalIntVals(nb);
|
||||
Vector minNodalVals(nb);
|
||||
Vector maxNodalVals(nb);
|
||||
Vector row(nb);
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
basisMatNodes.GetRow(i, row);
|
||||
minNodalVals(i) = row*minBounds;
|
||||
maxNodalVals(i) = row*maxBounds;
|
||||
basisMatInt.GetRow(i, row);
|
||||
meanNodalIntVals(i) = row*meanBounds;
|
||||
}
|
||||
// linear fit along each tower
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
x = 2.0*nodes_int(i)-1; // x-coordinate
|
||||
w = 2.0*weights_int(i); // weight
|
||||
a0V(j) += 0.5*meanNodalIntVals(i)*w;
|
||||
a1V(j) += 1.5*meanNodalIntVals(i)*w*x;
|
||||
}
|
||||
// offset the linear fit from bounding coefficients
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
x = 2.0*nodes(i)-1; // x-coordinate
|
||||
minBounds(i) -= a0V(j) + a1V(j)*x;
|
||||
maxBounds(i) -= a0V(j) + a1V(j)*x;
|
||||
}
|
||||
// Compute Bernstein coefficients
|
||||
LUFactors lu(basisMatLU.GetData(), lu_ip.GetData());
|
||||
lu.Solve(nb, 1, minBounds.GetData());
|
||||
lu.Solve(nb, 1, maxBounds.GetData());
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
intminT(i*ncp2+j) = minBounds(i);
|
||||
intmaxT(i*ncp2+j) = maxBounds(i);
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
// nodal bases
|
||||
for (int j = 0; j < nb; j++) // tower of nodes
|
||||
{
|
||||
x = 2.0*nodes(j)-1; // x-coordinate
|
||||
w = 2.0*weights(j); // weight
|
||||
for (int i = 0; i < ncp2; i++) // slice of interval points
|
||||
{
|
||||
t = 0.5*(intminT(j*ncp2+i)+intmaxT(j*ncp2+i));
|
||||
a0V(i) += 0.5*t*w;
|
||||
a1V(i) += 1.5*t*w*x;
|
||||
}
|
||||
}
|
||||
// offset the linear fit from nodal values
|
||||
for (int j = 0; j < nb; j++) // row of nodes
|
||||
{
|
||||
x = 2.0*nodes(j)-1; // x-coordinate
|
||||
for (int i = 0; i < ncp2; i++) // column of interval points
|
||||
{
|
||||
t = a0V(i) + a1V(i)*x;
|
||||
intminT(j*ncp2+i) -= t;
|
||||
intmaxT(j*ncp2+i) -= t;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Initialize bounds using a0 and a1 values
|
||||
for (int j = 0; j < ncp; j++) // slice j
|
||||
{
|
||||
x = 2.0*control_points(j)-1;
|
||||
for (int i = 0; i < ncp2; i++) // tower i
|
||||
{
|
||||
intmin(j*ncp2+i) = a0V(i) + a1V(i)*x;
|
||||
intmax(j*ncp2+i) = a0V(i) + a1V(i)*x;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Compute bounds
|
||||
int id1 = 0, id2 = 0;
|
||||
Vector vals(4);
|
||||
for (int j = 0; j < nb; j++)
|
||||
{
|
||||
for (int i = 0; i < ncp2; i++) // ith tower
|
||||
{
|
||||
real_t w0 = intminT(id1++);
|
||||
real_t w1 = intmaxT(id2++);
|
||||
for (int k = 0; k < ncp; k++) // kth slice
|
||||
{
|
||||
vals(0) = w0*lbound(j,k);
|
||||
vals(1) = w0*ubound(j,k);
|
||||
vals(2) = w1*lbound(j,k);
|
||||
vals(3) = w1*ubound(j,k);
|
||||
intmin(k*ncp2+i) += vals.Min();
|
||||
intmax(k*ncp2+i) += vals.Max();
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void PLBound::GetNDBounds(int rdim, Vector &coeff,
|
||||
Vector &intmin, Vector &intmax) const
|
||||
{
|
||||
if (rdim == 1)
|
||||
{
|
||||
Get1DBounds(coeff, intmin, intmax);
|
||||
}
|
||||
else if (rdim == 2)
|
||||
{
|
||||
Get2DBounds(coeff, intmin, intmax);
|
||||
}
|
||||
else if (rdim == 3)
|
||||
{
|
||||
Get3DBounds(coeff, intmin, intmax);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Currently not supported.");
|
||||
}
|
||||
}
|
||||
|
||||
void PLBound::SetupBernsteinBasisMat(DenseMatrix &basisMat,
|
||||
Vector &nodesBern) const
|
||||
{
|
||||
const int nbern = nodesBern.Size();
|
||||
L2_SegmentElement el(nbern-1, 2); // we use L2 to leverage lexicographic order
|
||||
Array<int> ordering = el.GetLexicographicOrdering();
|
||||
basisMat.SetSize(nbern, nbern);
|
||||
Vector shape(nbern);
|
||||
IntegrationPoint ip;
|
||||
for (int i = 0; i < nbern; i++)
|
||||
{
|
||||
ip.x = nodesBern(i);
|
||||
el.CalcShape(ip, shape);
|
||||
basisMat.SetRow(i, shape);
|
||||
}
|
||||
}
|
||||
|
||||
constexpr int PLBound::min_ncp_gl_x[2][11];
|
||||
constexpr int PLBound::min_ncp_gll_x[2][11];
|
||||
constexpr int PLBound::min_ncp_pos_x[2][11];
|
||||
|
||||
int PLBound::GetMinimumPointsForGivenBases(int nb_i, int b_type_i,
|
||||
int cp_type_i) const
|
||||
{
|
||||
MFEM_VERIFY(b_type_i >= 0 && b_type_i <= 2, "Invalid node type. Specify 0 "
|
||||
"for GL, 1 for GLL, and 2 for positive " "bases.");
|
||||
MFEM_VERIFY(cp_type_i == 0 || cp_type_i == 1, "Invalid control point type. "
|
||||
"Specify 0 for GL+end points, 1 for Chebyshev.");
|
||||
if (nb_i > 12)
|
||||
{
|
||||
MFEM_ABORT("GetMinimumPointsForGivenBases can only be used for maximum "
|
||||
"order = 11, i.e. nb=12. 2*nb points should be sufficient to "
|
||||
"bound the bases up to nb = 30.");
|
||||
}
|
||||
else if (b_type_i == 0)
|
||||
{
|
||||
return min_ncp_gl_x[cp_type_i][nb_i-2];
|
||||
}
|
||||
else if (b_type_i == 1)
|
||||
{
|
||||
return min_ncp_gll_x[cp_type_i][nb_i-2];
|
||||
}
|
||||
else if (b_type_i == 2)
|
||||
{
|
||||
return min_ncp_pos_x[cp_type_i][nb_i-2];
|
||||
}
|
||||
return 0;
|
||||
}
|
||||
|
||||
void PLBound::Print(std::ostream &outp) const
|
||||
{
|
||||
outp << "PLBound nb: " << nb << std::endl;
|
||||
outp << "PLBound ncp: " << ncp << std::endl;
|
||||
outp << "PLBound b_type: " << b_type << std::endl;
|
||||
outp << "PLBound cp_type: " << cp_type << std::endl;
|
||||
outp << "Print nodes: " << std::endl;
|
||||
nodes.Print(outp);
|
||||
outp << "Print weights: " << std::endl;
|
||||
weights.Print(outp);
|
||||
outp << "Print control_points: " << std::endl;
|
||||
control_points.Print(outp);
|
||||
outp << "Print lower bounds: " << std::endl;
|
||||
lbound.Print(outp);
|
||||
outp << "Print upper bounds: " << std::endl;
|
||||
ubound.Print(outp);
|
||||
}
|
||||
|
||||
}
|
||||
+136
@@ -0,0 +1,136 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_BOUND
|
||||
#define MFEM_BOUND
|
||||
|
||||
#include "../config/config.hpp"
|
||||
#include "fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/** @name Piecewise linear bounds of bases
|
||||
\brief Piecewise linear bounds of bases can be used to compute bounds on the grid function in each element. The bounds for the bases are constructed based on the following parameters:
|
||||
|
||||
(i) @b nb: number of bases/nodes in 1D (i.e. polynomial order+1),
|
||||
|
||||
(ii) @b b_type: bases type, 0 - Lagrange interpolants on Gauss-Legendre nodes, 1 - Lagrange interpolants on Gauss-Lobatto-Legendre nodes, and
|
||||
2 - Positive/Bernstein bases on uniformly distributed nodes,
|
||||
|
||||
(iii) @b ncp: number of control points used to construct the piecewise linear bounds
|
||||
|
||||
(iv) @b cp_type: control point distribution. 0 - GL + end-points,
|
||||
1 - Chebyshev.
|
||||
|
||||
Note: @b nb and @b b_type are inferred directly from the grid-function.
|
||||
|
||||
If the user does not specify @b ncp and @b cp_type, the minimum value of
|
||||
@b ncp is used that would bound the bases for the @b cp_type. We default
|
||||
to @b cp_type = 0 as it requires fewer number of points to bound the bases. Typically, @b ncp = 2 @b nb is sufficient to get fairly compact bounds, and increasing @b ncp results in tighter bounds.
|
||||
|
||||
Finally, only tensor-product elements are currently supported.
|
||||
|
||||
For more technical details see:
|
||||
Mittal et al., "General Field Evaluation in High-Order Meshes on GPUs" &
|
||||
Dzanic et al., "A method for bounding high-order finite element
|
||||
functions: Applications to mesh validity and bounds-preserving limiters".
|
||||
*/
|
||||
class PLBound
|
||||
{
|
||||
private:
|
||||
int nb; // #mesh nodes in 1D
|
||||
int ncp; // #control points in 1D
|
||||
int b_type; // bases type: 0 - GL, 1 - GLL, 2 - Bernstein
|
||||
int cp_type; // control points type: 0 - GL+Ends, 1 - Chebyshev
|
||||
bool proj = true; // Use linear projection to compute bounds.
|
||||
real_t tol = 0.0; // offset bounds to avoid round-off errors
|
||||
Vector nodes, weights, control_points;
|
||||
DenseMatrix lbound, ubound; // nb x ncp matrices with bounds of all bases
|
||||
// Some auxillary storage for computing the bounds with Bernstein
|
||||
DenseMatrix basisMatNodes; // Bernstein bases at equispaced nodes
|
||||
DenseMatrix basisMatInt; // Bernstein bases at GLL nodes
|
||||
Vector nodes_int, weights_int; // Integration nodes and weights
|
||||
DenseMatrix basisMatLU; // Used to compute LU factors for Bernstein
|
||||
mutable Array<int> lu_ip;
|
||||
|
||||
// stores min_ncp for nb = 2..12 for Lagrange interpolants on GL nodes
|
||||
// with GL+end points and Chebyshev points as control points
|
||||
static constexpr int min_ncp_gl_x[2][11]= {{3,5,6,8,9,10,11,11,12,13,14},
|
||||
{3,5,8,9,11,12,14,15,17,18,20}
|
||||
};
|
||||
|
||||
// stores min_ncp for nb = 2..12 for Lagrange interpolants on GLL nodes
|
||||
// with GL+end points and Chebyshev points as control points
|
||||
static constexpr int min_ncp_gll_x[2][11]= {{3,5,7,8,9,10,12,13,14,15,16},
|
||||
{3,5,8,10,12,13,15,17,19,21,22}
|
||||
};
|
||||
|
||||
// stores min_ncp for nb = 2..12 for Bernstein bases with GL+end points
|
||||
// and Chebyshev points as control points
|
||||
static constexpr int min_ncp_pos_x[2][11]= {{3,5,7,8,8,9,10,10,11,12,13},
|
||||
{3,5,8,9,11,12,13,13,14,15,16}
|
||||
};
|
||||
|
||||
public:
|
||||
// Constructor
|
||||
PLBound(const int nb_i, const int ncp_i, const int b_type_i,
|
||||
const int cp_type_i, const real_t tol_i)
|
||||
{
|
||||
Setup(nb_i, ncp_i, b_type_i, cp_type_i, tol_i);
|
||||
}
|
||||
|
||||
// Constructor
|
||||
PLBound(FiniteElementSpace *fes, int ncp_i = -1, int cp_type_i = 0);
|
||||
|
||||
// Get minimum number of control points needed to bound the given bases
|
||||
int GetMinimumPointsForGivenBases(int nb_i, int b_type_i,
|
||||
int cp_type_i) const;
|
||||
|
||||
// Print information about the bounds
|
||||
void Print(std::ostream &outp = mfem::out) const;
|
||||
|
||||
// Enable (default) or disable linear projection before bounding.
|
||||
// This projection increases the computational cost but results in tighter
|
||||
// bounds.
|
||||
void SetProjectionFlagForBounding(bool proj_) { proj = proj_; }
|
||||
|
||||
/// Compute piecewise linear bounds for the lexicographically-ordered
|
||||
/// coefficients in @a coeff in 1D/2D/3D.
|
||||
void GetNDBounds(int rdim, Vector &coeff,
|
||||
Vector &intmin, Vector &intmax) const;
|
||||
|
||||
/// Get number of control points used to compute the bounds.
|
||||
int GetNControlPoints() const { return ncp; }
|
||||
private:
|
||||
/// Compute piecewise linear bounds for the lexicographically-ordered
|
||||
/// coefficients in @a coeff in 1D.
|
||||
void Get1DBounds(Vector &coeff, Vector &intmin, Vector &intmax) const;
|
||||
|
||||
/// Compute piecewise linear bounds for the lexicographically-ordered
|
||||
/// coefficients in @a coeff in 2D.
|
||||
void Get2DBounds(Vector &coeff, Vector &intmin, Vector &intmax) const;
|
||||
|
||||
/// Compute piecewise linear bounds for the lexicographically-ordered
|
||||
/// coefficients in @a coeff in 3D.
|
||||
void Get3DBounds(Vector &coeff, Vector &intmin, Vector &intmax) const;
|
||||
|
||||
/// Setup matrix used to compute values at given 1D locations in [0,1]
|
||||
/// for Bernstein bases.
|
||||
void SetupBernsteinBasisMat(DenseMatrix &basisMat, Vector &nodesBern) const;
|
||||
|
||||
void Setup(const int nb_i, const int ncp_i, const int b_type_i,
|
||||
const int cp_type_i, const real_t tol_i);
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_BOUND
|
||||
@@ -0,0 +1,217 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "complex_fem.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
real_t
|
||||
RealPartCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
complex_t val = complex_coef_.Eval(T, ip);
|
||||
return val.real();
|
||||
}
|
||||
|
||||
real_t
|
||||
ImagPartCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
complex_t val = complex_coef_.Eval(T, ip);
|
||||
return val.imag();
|
||||
}
|
||||
|
||||
RealPartVectorCoefficient::RealPartVectorCoefficient(ComplexVectorCoefficient &
|
||||
complex_vcoef)
|
||||
: VectorCoefficient(complex_vcoef.GetVDim()),
|
||||
complex_vcoef_(complex_vcoef),
|
||||
val_(vdim)
|
||||
{}
|
||||
|
||||
void
|
||||
RealPartVectorCoefficient::Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
complex_vcoef_.Eval(val_, T, ip);
|
||||
V = val_.real();
|
||||
}
|
||||
|
||||
ImagPartVectorCoefficient::ImagPartVectorCoefficient(ComplexVectorCoefficient &
|
||||
complex_vcoef)
|
||||
: VectorCoefficient(complex_vcoef.GetVDim()),
|
||||
complex_vcoef_(complex_vcoef),
|
||||
val_(vdim)
|
||||
{}
|
||||
|
||||
void
|
||||
ImagPartVectorCoefficient::Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
complex_vcoef_.Eval(val_, T, ip);
|
||||
V = val_.imag();
|
||||
}
|
||||
|
||||
RealPartMatrixCoefficient::RealPartMatrixCoefficient(ComplexMatrixCoefficient &
|
||||
complex_mcoef)
|
||||
: MatrixCoefficient(complex_mcoef.GetHeight(), complex_mcoef.GetWidth()),
|
||||
complex_mcoef_(complex_mcoef),
|
||||
val_(height, width)
|
||||
{}
|
||||
|
||||
void
|
||||
RealPartMatrixCoefficient::Eval(DenseMatrix &M, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
complex_mcoef_.Eval(val_, T, ip);
|
||||
M = val_.real();
|
||||
}
|
||||
|
||||
ImagPartMatrixCoefficient::ImagPartMatrixCoefficient(ComplexMatrixCoefficient &
|
||||
complex_mcoef)
|
||||
: MatrixCoefficient(complex_mcoef.GetHeight(), complex_mcoef.GetWidth()),
|
||||
complex_mcoef_(complex_mcoef),
|
||||
val_(height, width)
|
||||
{}
|
||||
|
||||
void
|
||||
ImagPartMatrixCoefficient::Eval(DenseMatrix &M, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
complex_mcoef_.Eval(val_, T, ip);
|
||||
M = val_.imag();
|
||||
}
|
||||
|
||||
ComplexCoefficient::ComplexCoefficient()
|
||||
: time(0.),
|
||||
re_part_coef_(*this), im_part_coef_(*this),
|
||||
real_coef_(re_part_coef_), imag_coef_(im_part_coef_)
|
||||
{ }
|
||||
|
||||
ComplexCoefficient::ComplexCoefficient(Coefficient &c_r,
|
||||
Coefficient &c_i)
|
||||
: time(c_r.GetTime()),
|
||||
re_part_coef_(*this), im_part_coef_(*this),
|
||||
real_coef_(c_r), imag_coef_(c_i)
|
||||
{
|
||||
c_i.SetTime(time);
|
||||
}
|
||||
|
||||
complex_t
|
||||
ComplexCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
// Avoid circular dependency
|
||||
MFEM_VERIFY(std::addressof(real_coef_) != std::addressof(re_part_coef_) &&
|
||||
std::addressof(imag_coef_) != std::addressof(im_part_coef_),
|
||||
"Classes dervied from ComplexCoefficient must either "
|
||||
"implement an Eval method or supply Coefficients "
|
||||
"for both the real and imaginary parts of the field.");
|
||||
|
||||
return complex_t(real_coef_.Eval(T, ip), imag_coef_.Eval(T, ip));
|
||||
}
|
||||
|
||||
ComplexVectorCoefficient::ComplexVectorCoefficient(VectorCoefficient &v_r,
|
||||
VectorCoefficient &v_i)
|
||||
: vdim(v_r.GetVDim()), time(v_r.GetTime()),
|
||||
re_part_vcoef_(*this), im_part_vcoef_(*this),
|
||||
real_vcoef_(v_r), imag_vcoef_(v_i)
|
||||
{
|
||||
MFEM_ASSERT(v_r.GetVDim() == v_i.GetVDim(), "ComplexVectorCoefficient"
|
||||
" - incompatible vector dimensions of real and imaginary parts.");
|
||||
|
||||
v_i.SetTime(time);
|
||||
}
|
||||
|
||||
void ComplexVectorCoefficient::Eval(ComplexVector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
// Avoid circular dependency
|
||||
MFEM_VERIFY(std::addressof(real_vcoef_) != std::addressof(re_part_vcoef_) &&
|
||||
std::addressof(imag_vcoef_) != std::addressof(im_part_vcoef_),
|
||||
"Classes dervied from ComplexVectorCoefficient must either "
|
||||
"implement an Eval method or supply VectorCoefficients "
|
||||
"for both the real and imaginary parts of the field.");
|
||||
|
||||
V_r_.SetSize(vdim);
|
||||
V_i_.SetSize(vdim);
|
||||
|
||||
real_vcoef_.Eval(V_r_, T, ip);
|
||||
imag_vcoef_.Eval(V_i_, T, ip);
|
||||
|
||||
V.Set(V_r_, V_i_);
|
||||
}
|
||||
|
||||
ComplexConstantCoefficient::ComplexConstantCoefficient(
|
||||
const complex_t z)
|
||||
: val(z), real_coef(z.real()), imag_coef(z.imag())
|
||||
{
|
||||
real_coef_ = real_coef;
|
||||
imag_coef_ = imag_coef;
|
||||
}
|
||||
|
||||
ComplexConstantCoefficient::ComplexConstantCoefficient(
|
||||
real_t z_r, real_t z_i)
|
||||
: real_coef(z_r), imag_coef(z_i)
|
||||
{
|
||||
val = complex_t(z_r, z_i);
|
||||
|
||||
real_coef_ = real_coef;
|
||||
imag_coef_ = imag_coef;
|
||||
}
|
||||
|
||||
complex_t ComplexFunctionCoefficient::Eval(ElementTransformation & T,
|
||||
const IntegrationPoint & ip)
|
||||
{
|
||||
real_t x[3];
|
||||
Vector transip(x, 3);
|
||||
|
||||
T.Transform(ip, transip);
|
||||
|
||||
if (Function)
|
||||
{
|
||||
return Function(transip);
|
||||
}
|
||||
else
|
||||
{
|
||||
return TDFunction(transip, GetTime());
|
||||
}
|
||||
}
|
||||
|
||||
void ComplexVectorFunctionCoefficient::Eval(ComplexVector &V,
|
||||
ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
real_t x[3];
|
||||
Vector transip(x, 3);
|
||||
|
||||
T.Transform(ip, transip);
|
||||
|
||||
V.SetSize(vdim);
|
||||
if (Function)
|
||||
{
|
||||
Function(transip, V);
|
||||
}
|
||||
else
|
||||
{
|
||||
TDFunction(transip, GetTime(), V);
|
||||
}
|
||||
if (Q)
|
||||
{
|
||||
V *= Q->Eval(T, ip, GetTime());
|
||||
}
|
||||
}
|
||||
|
||||
} // end namespace mfem
|
||||
|
||||
@@ -0,0 +1,523 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_COMPLEX_COEFFICIENT
|
||||
#define MFEM_COMPLEX_COEFFICIENT
|
||||
|
||||
#include "../config/config.hpp"
|
||||
#include "../linalg/linalg.hpp"
|
||||
#include "coefficient.hpp"
|
||||
#include "intrules.hpp"
|
||||
#include "eltrans.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class ComplexCoefficient;
|
||||
class ComplexVectorCoefficient;
|
||||
class ComplexMatrixCoefficient;
|
||||
|
||||
/// Standard Coefficient which returns the real part of a ComplexCoefficient
|
||||
class RealPartCoefficient : public Coefficient
|
||||
{
|
||||
private:
|
||||
ComplexCoefficient &complex_coef_;
|
||||
|
||||
public:
|
||||
RealPartCoefficient(ComplexCoefficient & complex_coef)
|
||||
: complex_coef_(complex_coef) {}
|
||||
|
||||
real_t Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
/// Standard Coefficient which returns the imaginary part of a
|
||||
/// ComplexCoefficient
|
||||
class ImagPartCoefficient : public Coefficient
|
||||
{
|
||||
private:
|
||||
ComplexCoefficient &complex_coef_;
|
||||
|
||||
public:
|
||||
ImagPartCoefficient(ComplexCoefficient & complex_coef)
|
||||
: complex_coef_(complex_coef) {}
|
||||
|
||||
real_t Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
typedef ImagPartCoefficient ImaginaryPartCoefficient;
|
||||
|
||||
class RealPartVectorCoefficient : public VectorCoefficient
|
||||
{
|
||||
private:
|
||||
ComplexVectorCoefficient &complex_vcoef_;
|
||||
mutable ComplexVector val_;
|
||||
|
||||
public:
|
||||
RealPartVectorCoefficient(ComplexVectorCoefficient & complex_vcoef);
|
||||
|
||||
void Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
class ImagPartVectorCoefficient : public VectorCoefficient
|
||||
{
|
||||
private:
|
||||
ComplexVectorCoefficient &complex_vcoef_;
|
||||
mutable ComplexVector val_;
|
||||
|
||||
public:
|
||||
ImagPartVectorCoefficient(ComplexVectorCoefficient & complex_vcoef);
|
||||
|
||||
void Eval(Vector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
typedef ImagPartVectorCoefficient ImaginaryPartVectorCoefficient;
|
||||
|
||||
class RealPartMatrixCoefficient : public MatrixCoefficient
|
||||
{
|
||||
private:
|
||||
ComplexMatrixCoefficient &complex_mcoef_;
|
||||
mutable ComplexTypeDenseMatrix val_;
|
||||
|
||||
public:
|
||||
RealPartMatrixCoefficient(ComplexMatrixCoefficient & complex_mcoef);
|
||||
|
||||
void Eval(DenseMatrix &M, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
class ImagPartMatrixCoefficient : public MatrixCoefficient
|
||||
{
|
||||
private:
|
||||
ComplexMatrixCoefficient &complex_mcoef_;
|
||||
mutable ComplexTypeDenseMatrix val_;
|
||||
|
||||
public:
|
||||
ImagPartMatrixCoefficient(ComplexMatrixCoefficient & complex_mcoef);
|
||||
|
||||
void Eval(DenseMatrix &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
typedef ImagPartMatrixCoefficient ImaginaryPartMatrixCoefficient;
|
||||
|
||||
/** @brief Base class ComplexCoefficients that optionally depend on space and
|
||||
time. These are used by the SesquilinearForm, ComplexLinearForm, and
|
||||
ComplexGridFunction classes to represent the physical coefficients in
|
||||
the PDEs that are being discretized. This class can also be used in a more
|
||||
general way to represent functions that don't necessarily belong to a FE
|
||||
space, e.g., to project onto ComplexGridFunctions to use as initial
|
||||
conditions, exact solutions, etc. See, e.g., ex22 for these uses. */
|
||||
class ComplexCoefficient
|
||||
{
|
||||
protected:
|
||||
real_t time;
|
||||
|
||||
private:
|
||||
RealPartCoefficient re_part_coef_;
|
||||
ImagPartCoefficient im_part_coef_;
|
||||
|
||||
protected:
|
||||
Coefficient &real_coef_;
|
||||
Coefficient &imag_coef_;
|
||||
|
||||
public:
|
||||
|
||||
ComplexCoefficient();
|
||||
ComplexCoefficient(Coefficient &c_r, Coefficient &c_i);
|
||||
|
||||
/// Set the time for time dependent coefficients
|
||||
virtual void SetTime(real_t t)
|
||||
{ time = t; real_coef_.SetTime(t); imag_coef_.SetTime(t); }
|
||||
|
||||
/// Get the time for time dependent coefficients
|
||||
real_t GetTime() { return time; }
|
||||
|
||||
/** @brief Evaluate the coefficient in the element described by @a T at the
|
||||
point @a ip. */
|
||||
/** @note When this method is called, the caller must make sure that the
|
||||
IntegrationPoint associated with @a T is the same as @a ip. This can be
|
||||
achieved by calling T.SetIntPoint(&ip). */
|
||||
virtual complex_t Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
|
||||
/** @brief Evaluate the coefficient in the element described by @a T at the
|
||||
point @a ip at time @a t. */
|
||||
/** @note When this method is called, the caller must make sure that the
|
||||
IntegrationPoint associated with @a T is the same as @a ip. This can be
|
||||
achieved by calling T.SetIntPoint(&ip). */
|
||||
complex_t Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip, real_t t)
|
||||
{
|
||||
SetTime(t);
|
||||
return Eval(T, ip);
|
||||
}
|
||||
|
||||
/** @brief Access a standard Coefficient object reproducing the real part of
|
||||
the complex-valued field */
|
||||
/** @note By default this method returns an internal object which
|
||||
computes the complex value using the above Eval method and
|
||||
returns its real part. Custom implementations may choose to
|
||||
override this method with a more efficient real-valued
|
||||
coefficient. */
|
||||
virtual Coefficient & real() { return real_coef_; }
|
||||
|
||||
/** @brief Access a standard Coefficient object reproducing the imaginary
|
||||
part of the complex-valued field */
|
||||
/** @note By default this method returns an internal object which
|
||||
computes the complex value using the above Eval method and
|
||||
returns its imaginary part. Custom implementations may choose to
|
||||
override this method with a more efficient real-valued
|
||||
coefficient. */
|
||||
virtual Coefficient & imag() { return imag_coef_; }
|
||||
|
||||
virtual ~ComplexCoefficient() { }
|
||||
};
|
||||
|
||||
/** @brief Base class ComplexVectorCoefficients that optionally depend
|
||||
on space and time. These are used by the SesquilinearForm,
|
||||
ComplexLinearForm, and ComplexGridFunction classes to represent
|
||||
the physical vector-valued coefficients in the PDEs that are being
|
||||
discretized. This class can also be used in a more general way to
|
||||
represent functions that don't necessarily belong to a FE space,
|
||||
e.g., to project onto ComplexGridFunctions to use as initial
|
||||
conditions, exact solutions, etc. See, e.g., ex22 for these
|
||||
uses. */
|
||||
class ComplexVectorCoefficient
|
||||
{
|
||||
protected:
|
||||
int vdim;
|
||||
real_t time;
|
||||
|
||||
private:
|
||||
RealPartVectorCoefficient re_part_vcoef_;
|
||||
ImagPartVectorCoefficient im_part_vcoef_;
|
||||
|
||||
protected:
|
||||
VectorCoefficient &real_vcoef_;
|
||||
VectorCoefficient &imag_vcoef_;
|
||||
|
||||
mutable Vector V_r_;
|
||||
mutable Vector V_i_;
|
||||
|
||||
public:
|
||||
ComplexVectorCoefficient(int vd)
|
||||
: vdim(vd), time(0.),
|
||||
re_part_vcoef_(*this), im_part_vcoef_(*this),
|
||||
real_vcoef_(re_part_vcoef_), imag_vcoef_(im_part_vcoef_)
|
||||
{ }
|
||||
|
||||
ComplexVectorCoefficient(VectorCoefficient &v_r, VectorCoefficient &v_i);
|
||||
|
||||
|
||||
/// Set the time for time dependent coefficients
|
||||
virtual void SetTime(real_t t)
|
||||
{ time = t; real_vcoef_.SetTime(t); imag_vcoef_.SetTime(t); }
|
||||
|
||||
/// Get the time for time dependent coefficients
|
||||
real_t GetTime() { return time; }
|
||||
|
||||
/// Returns dimension of the vector.
|
||||
int GetVDim() { return vdim; }
|
||||
|
||||
/** @brief Evaluate the vector coefficient in the element described by @a T
|
||||
at the point @a ip, storing the result in @a V. */
|
||||
/** @note When this method is called, the caller must make sure that the
|
||||
IntegrationPoint associated with @a T is the same as @a ip. This can be
|
||||
achieved by calling T.SetIntPoint(&ip). */
|
||||
virtual void Eval(ComplexVector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
|
||||
/** @brief Evaluate the vector coefficient in the element described by @a T
|
||||
at the point @a ip at time @a t, storing the result in @a V. */
|
||||
/** @note When this method is called, the caller must make sure that the
|
||||
IntegrationPoint associated with @a T is the same as @a ip. This can be
|
||||
achieved by calling T.SetIntPoint(&ip). */
|
||||
void Eval(ComplexVector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip, real_t t)
|
||||
{
|
||||
SetTime(t);
|
||||
Eval(V, T, ip);
|
||||
}
|
||||
|
||||
/** @brief Access a standard Coefficient object reproducing the real part of
|
||||
the complex-valued field */
|
||||
/** @note By default this method returns an internal object which
|
||||
computes the complex value using the above Eval method and
|
||||
returns its real part. Custom implementations may choose to
|
||||
override this method with a more efficient real-valued
|
||||
coefficient. */
|
||||
virtual VectorCoefficient & real() { return real_vcoef_; }
|
||||
|
||||
/** @brief Access a standard Coefficient object reproducing the imaginary
|
||||
part of the complex-valued field */
|
||||
/** @note By default this method returns an internal object which
|
||||
computes the complex value using the above Eval method and
|
||||
returns its imaginary part. Custom implementations may choose to
|
||||
override this method with a more efficient real-valued
|
||||
coefficient. */
|
||||
virtual VectorCoefficient & imag() { return imag_vcoef_; }
|
||||
|
||||
virtual ~ComplexVectorCoefficient() { }
|
||||
};
|
||||
|
||||
/** @brief Base class ComplexMatrixCoefficients that optionally depend
|
||||
on space and time. These are used by the SesquilinearForm,
|
||||
ComplexLinearForm, and ComplexGridFunction classes to represent
|
||||
the physical matrix-valued coefficients in the PDEs that are being
|
||||
discretized. This class can also be used in a more general way to
|
||||
represent functions that don't necessarily belong to a FE space.
|
||||
See, e.g., ex22 for these uses. */
|
||||
class ComplexMatrixCoefficient
|
||||
{
|
||||
protected:
|
||||
int height, width;
|
||||
real_t time;
|
||||
|
||||
private:
|
||||
RealPartMatrixCoefficient re_part_mcoef_;
|
||||
ImagPartMatrixCoefficient im_part_mcoef_;
|
||||
|
||||
protected:
|
||||
MatrixCoefficient &real_mcoef_;
|
||||
MatrixCoefficient &imag_mcoef_;
|
||||
|
||||
mutable DenseMatrix M_r_;
|
||||
mutable DenseMatrix M_i_;
|
||||
|
||||
public:
|
||||
/// Construct a dim x dim matrix coefficient.
|
||||
explicit ComplexMatrixCoefficient(int dim)
|
||||
: height(dim), width(dim), time(0.),
|
||||
re_part_mcoef_(*this), im_part_mcoef_(*this),
|
||||
real_mcoef_(re_part_mcoef_), imag_mcoef_(im_part_mcoef_)
|
||||
{ }
|
||||
|
||||
/// Construct a h x w matrix coefficient.
|
||||
ComplexMatrixCoefficient(int h, int w) :
|
||||
height(h), width(w), time(0.),
|
||||
re_part_mcoef_(*this), im_part_mcoef_(*this),
|
||||
real_mcoef_(re_part_mcoef_), imag_mcoef_(im_part_mcoef_)
|
||||
{ }
|
||||
|
||||
/// Set the time for time dependent coefficients
|
||||
virtual void SetTime(real_t t) { time = t; }
|
||||
|
||||
/// Get the time for time dependent coefficients
|
||||
real_t GetTime() { return time; }
|
||||
|
||||
/// Get the height of the matrix.
|
||||
int GetHeight() const { return height; }
|
||||
|
||||
/// Get the width of the matrix.
|
||||
int GetWidth() const { return width; }
|
||||
|
||||
/// For backward compatibility get the width of the matrix.
|
||||
int GetVDim() const { return width; }
|
||||
|
||||
/** @brief Evaluate the matrix coefficient in the element described by @a T
|
||||
at the point @a ip, storing the result in @a K. */
|
||||
/** @note When this method is called, the caller must make sure that the
|
||||
IntegrationPoint associated with @a T is the same as @a ip. This can be
|
||||
achieved by calling T.SetIntPoint(&ip). */
|
||||
virtual void Eval(ComplexTypeDenseMatrix &K, ElementTransformation &T,
|
||||
const IntegrationPoint &ip) = 0;
|
||||
|
||||
/** @brief Access a standard Coefficient object reproducing the real part of
|
||||
the complex-valued field */
|
||||
/** @note By default this method returns an internal object which
|
||||
computes the complex value using the above Eval method and
|
||||
returns its real part. Custom implementations may choose to
|
||||
override this method with a more efficient real-valued
|
||||
coefficient. */
|
||||
virtual MatrixCoefficient & real() { return real_mcoef_; }
|
||||
|
||||
/** @brief Access a standard Coefficient object reproducing the imaginary
|
||||
part of the complex-valued field */
|
||||
/** @note By default this method returns an internal object which
|
||||
computes the complex value using the above Eval method and
|
||||
returns its imaginary part. Custom implementations may choose to
|
||||
override this method with a more efficient real-valued
|
||||
coefficient. */
|
||||
virtual MatrixCoefficient & imag() { return imag_mcoef_; }
|
||||
|
||||
virtual ~ComplexMatrixCoefficient() { }
|
||||
};
|
||||
|
||||
/// A complex-valued coefficient that is constant across space and time
|
||||
class ComplexConstantCoefficient : public ComplexCoefficient
|
||||
{
|
||||
private:
|
||||
complex_t val;
|
||||
|
||||
ConstantCoefficient real_coef;
|
||||
ConstantCoefficient imag_coef;
|
||||
|
||||
public:
|
||||
ComplexConstantCoefficient(const complex_t z);
|
||||
|
||||
ComplexConstantCoefficient(real_t z_r, real_t z_i = 0.);
|
||||
|
||||
complex_t Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip) { return val; }
|
||||
};
|
||||
|
||||
/// Complex-valued vector coefficient that is constant in space and time.
|
||||
class ComplexVectorConstantCoefficient : public ComplexVectorCoefficient
|
||||
{
|
||||
private:
|
||||
ComplexVector vec;
|
||||
|
||||
public:
|
||||
/// Construct the coefficient with constant vector @a v.
|
||||
ComplexVectorConstantCoefficient(const ComplexVector &v)
|
||||
: ComplexVectorCoefficient(v.Size()), vec(v) { }
|
||||
|
||||
/// Construct the coefficient with constant vector @a v.
|
||||
ComplexVectorConstantCoefficient(const Vector &v)
|
||||
: ComplexVectorCoefficient(v.Size()), vec(v) { }
|
||||
|
||||
using ComplexVectorCoefficient::Eval;
|
||||
|
||||
/// Evaluate the vector coefficient at @a ip.
|
||||
void Eval(ComplexVector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip) override { V = vec; }
|
||||
|
||||
/// Return a reference to the constant vector in this class.
|
||||
const ComplexVector& GetVec() const { return vec; }
|
||||
};
|
||||
|
||||
/// Complex-valued vector coefficient that is constant in space and time.
|
||||
class ComplexMatrixConstantCoefficient : public ComplexMatrixCoefficient
|
||||
{
|
||||
private:
|
||||
ComplexTypeDenseMatrix mat;
|
||||
|
||||
public:
|
||||
/// Construct the coefficient with constant vector @a v.
|
||||
ComplexMatrixConstantCoefficient(const ComplexTypeDenseMatrix &m)
|
||||
: ComplexMatrixCoefficient(m.Height(), m.Width()), mat(m) { }
|
||||
|
||||
/// Construct the coefficient with constant vector @a v.
|
||||
ComplexMatrixConstantCoefficient(const DenseMatrix &m)
|
||||
: ComplexMatrixCoefficient(m.Height(), m.Width()), mat(m) { }
|
||||
|
||||
using ComplexMatrixCoefficient::Eval;
|
||||
|
||||
/// Evaluate the matrix coefficient at @a ip.
|
||||
void Eval(ComplexTypeDenseMatrix &M, ElementTransformation &T,
|
||||
const IntegrationPoint &ip) override { M = mat; }
|
||||
|
||||
/// Return a reference to the constant matrix in this class.
|
||||
const ComplexTypeDenseMatrix& GetMat() const { return mat; }
|
||||
};
|
||||
|
||||
/// A general complex-valued function coefficient
|
||||
class ComplexFunctionCoefficient : public ComplexCoefficient
|
||||
{
|
||||
protected:
|
||||
std::function<complex_t(const Vector &)> Function;
|
||||
std::function<complex_t(const Vector &, real_t)> TDFunction;
|
||||
|
||||
public:
|
||||
/// Define a time-independent coefficient from a std function
|
||||
/** \param F time-independent std::function */
|
||||
ComplexFunctionCoefficient(std::function<complex_t
|
||||
(const Vector &)> F)
|
||||
: Function(std::move(F))
|
||||
{ }
|
||||
|
||||
/// Define a time-dependent coefficient from a std function
|
||||
/** \param TDF time-dependent function */
|
||||
ComplexFunctionCoefficient(std::function<complex_t
|
||||
(const Vector &, real_t)> TDF)
|
||||
: TDFunction(std::move(TDF))
|
||||
{ }
|
||||
|
||||
/// (DEPRECATED) Define a time-independent coefficient from a C-function
|
||||
/** @deprecated Use the method where the C-function, @a f, uses a const
|
||||
Vector argument instead of Vector. */
|
||||
MFEM_DEPRECATED ComplexFunctionCoefficient(complex_t
|
||||
(*f)(Vector &))
|
||||
{
|
||||
// Cast first to (void*) to suppress a warning from newer version of
|
||||
// Clang when using -Wextra.
|
||||
Function = reinterpret_cast<complex_t(*)
|
||||
(const Vector&)>((void*)f);
|
||||
TDFunction = NULL;
|
||||
}
|
||||
|
||||
/// (DEPRECATED) Define a time-dependent coefficient from a C-function
|
||||
/** @deprecated Use the method where the C-function, @a tdf, uses a const
|
||||
Vector argument instead of Vector. */
|
||||
MFEM_DEPRECATED ComplexFunctionCoefficient(complex_t
|
||||
(*tdf)(Vector &, real_t))
|
||||
{
|
||||
Function = NULL;
|
||||
// Cast first to (void*) to suppress a warning from newer version of
|
||||
// Clang when using -Wextra.
|
||||
TDFunction =
|
||||
reinterpret_cast<complex_t(*)(const Vector&,
|
||||
real_t)>((void*)tdf);
|
||||
}
|
||||
|
||||
/// Evaluate the coefficient at @a ip.
|
||||
complex_t Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip) override;
|
||||
};
|
||||
|
||||
/// A general vector function coefficient
|
||||
class ComplexVectorFunctionCoefficient : public ComplexVectorCoefficient
|
||||
{
|
||||
private:
|
||||
std::function<void(const Vector &, ComplexVector &)> Function;
|
||||
std::function<void(const Vector &, real_t, ComplexVector &)> TDFunction;
|
||||
ComplexCoefficient *Q;
|
||||
|
||||
public:
|
||||
/// Define a time-independent complex-valued vector coefficient
|
||||
/// from a std function
|
||||
/** \param dim - the size of the vector
|
||||
\param F - time-independent function
|
||||
\param q - optional scalar Coefficient to scale the vector coefficient */
|
||||
ComplexVectorFunctionCoefficient(int dim,
|
||||
std::function<void(const Vector &,
|
||||
ComplexVector &)> F,
|
||||
ComplexCoefficient *q = nullptr)
|
||||
: ComplexVectorCoefficient(dim), Function(std::move(F)), Q(q)
|
||||
{ }
|
||||
|
||||
/// Define a time-dependent complex-valued vector coefficient from
|
||||
/// a std function
|
||||
/** \param dim - the size of the vector
|
||||
\param TDF - time-dependent function
|
||||
\param q - optional scalar ComplexCoefficient to scale the vector coefficient */
|
||||
ComplexVectorFunctionCoefficient(int dim,
|
||||
std::function<void(const Vector &, real_t,
|
||||
ComplexVector &)> TDF,
|
||||
ComplexCoefficient *q = nullptr)
|
||||
: ComplexVectorCoefficient(dim), TDFunction(std::move(TDF)), Q(q)
|
||||
{ }
|
||||
|
||||
using ComplexVectorCoefficient::Eval;
|
||||
/// Evaluate the vector coefficient at @a ip.
|
||||
void Eval(ComplexVector &V, ElementTransformation &T,
|
||||
const IntegrationPoint &ip) override;
|
||||
|
||||
virtual ~ComplexVectorFunctionCoefficient() { }
|
||||
};
|
||||
|
||||
} // end namespace mfem
|
||||
|
||||
#endif
|
||||
@@ -96,6 +96,23 @@ ComplexGridFunction::ProjectCoefficient(Coefficient &real_coeff,
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectCoefficient(Coefficient &real_coeff)
|
||||
{
|
||||
gfr->SyncMemory(*this);
|
||||
gfi->SyncMemory(*this);
|
||||
gfr->ProjectCoefficient(real_coeff);
|
||||
*gfi = 0.0;
|
||||
gfr->SyncAliasMemory(*this);
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectCoefficient(ComplexCoefficient &coeff)
|
||||
{
|
||||
this->ProjectCoefficient(coeff.real(), coeff.imag());
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectCoefficient(VectorCoefficient &real_vcoeff,
|
||||
VectorCoefficient &imag_vcoeff)
|
||||
@@ -108,6 +125,23 @@ ComplexGridFunction::ProjectCoefficient(VectorCoefficient &real_vcoeff,
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectCoefficient(VectorCoefficient &real_vcoeff)
|
||||
{
|
||||
gfr->SyncMemory(*this);
|
||||
gfi->SyncMemory(*this);
|
||||
gfr->ProjectCoefficient(real_vcoeff);
|
||||
*gfi = 0.0;
|
||||
gfr->SyncAliasMemory(*this);
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectCoefficient(ComplexVectorCoefficient &vcoeff)
|
||||
{
|
||||
this->ProjectCoefficient(vcoeff.real(), vcoeff.imag());
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectBdrCoefficient(Coefficient &real_coeff,
|
||||
Coefficient &imag_coeff,
|
||||
@@ -121,6 +155,26 @@ ComplexGridFunction::ProjectBdrCoefficient(Coefficient &real_coeff,
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectBdrCoefficient(Coefficient &real_coeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
ConstantCoefficient zero_coeff(0.0);
|
||||
gfr->SyncMemory(*this);
|
||||
gfi->SyncMemory(*this);
|
||||
gfr->ProjectBdrCoefficient(real_coeff, attr);
|
||||
gfi->ProjectBdrCoefficient(zero_coeff, attr);
|
||||
gfr->SyncAliasMemory(*this);
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectBdrCoefficient(ComplexCoefficient &coeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
this->ProjectBdrCoefficient(coeff.real(), coeff.imag(), attr);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectBdrCoefficientNormal(VectorCoefficient &real_vcoeff,
|
||||
VectorCoefficient &imag_vcoeff,
|
||||
@@ -134,6 +188,28 @@ ComplexGridFunction::ProjectBdrCoefficientNormal(VectorCoefficient &real_vcoeff,
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectBdrCoefficientNormal(VectorCoefficient &real_vcoeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
Vector zero_vec(real_vcoeff.GetVDim()); zero_vec = 0.;
|
||||
VectorConstantCoefficient zero_vcoeff(zero_vec);
|
||||
gfr->SyncMemory(*this);
|
||||
gfi->SyncMemory(*this);
|
||||
gfr->ProjectBdrCoefficientNormal(real_vcoeff, attr);
|
||||
gfi->ProjectBdrCoefficientNormal(zero_vcoeff, attr);
|
||||
gfr->SyncAliasMemory(*this);
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectBdrCoefficientNormal(
|
||||
ComplexVectorCoefficient &vcoeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
this->ProjectBdrCoefficientNormal(vcoeff.real(), vcoeff.imag(), attr);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient
|
||||
&real_vcoeff,
|
||||
@@ -149,6 +225,80 @@ ComplexGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient
|
||||
&real_vcoeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
Vector zero_vec(real_vcoeff.GetVDim()); zero_vec = 0.;
|
||||
VectorConstantCoefficient zero_vcoeff(zero_vec);
|
||||
gfr->SyncMemory(*this);
|
||||
gfi->SyncMemory(*this);
|
||||
gfr->ProjectBdrCoefficientTangent(real_vcoeff, attr);
|
||||
gfi->ProjectBdrCoefficientTangent(zero_vcoeff, attr);
|
||||
gfr->SyncAliasMemory(*this);
|
||||
gfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ComplexGridFunction::ProjectBdrCoefficientTangent(
|
||||
ComplexVectorCoefficient &vcoeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
this->ProjectBdrCoefficientTangent(vcoeff.real(), vcoeff.imag(), attr);
|
||||
}
|
||||
|
||||
real_t
|
||||
ComplexGridFunction::ComputeL2Error(Coefficient &re_exsol,
|
||||
Coefficient &im_exsol,
|
||||
const IntegrationRule *irs[],
|
||||
const Array<int> *elems) const
|
||||
{
|
||||
real_t err_r = gfr->ComputeL2Error(re_exsol, irs, elems);
|
||||
real_t err_i = gfi->ComputeL2Error(im_exsol, irs, elems);
|
||||
|
||||
return sqrt(err_r * err_r + err_i * err_i);
|
||||
}
|
||||
|
||||
real_t
|
||||
ComplexGridFunction::ComputeL2Error(Coefficient &re_exsol,
|
||||
const IntegrationRule *irs[],
|
||||
const Array<int> *elems) const
|
||||
{
|
||||
ConstantCoefficient zero_coef(0.0);
|
||||
|
||||
real_t err_r = gfr->ComputeL2Error(re_exsol, irs, elems);
|
||||
real_t err_i = gfi->ComputeL2Error(zero_coef, irs, elems);
|
||||
|
||||
return sqrt(err_r * err_r + err_i * err_i);
|
||||
}
|
||||
|
||||
real_t
|
||||
ComplexGridFunction::ComputeL2Error(VectorCoefficient &re_exsol,
|
||||
VectorCoefficient &im_exsol,
|
||||
const IntegrationRule *irs[],
|
||||
const Array<int> *elems) const
|
||||
{
|
||||
real_t err_r = gfr->ComputeL2Error(re_exsol, irs, elems);
|
||||
real_t err_i = gfi->ComputeL2Error(im_exsol, irs, elems);
|
||||
|
||||
return sqrt(err_r * err_r + err_i * err_i);
|
||||
}
|
||||
|
||||
real_t
|
||||
ComplexGridFunction::ComputeL2Error(VectorCoefficient &re_exsol,
|
||||
const IntegrationRule *irs[],
|
||||
const Array<int> *elems) const
|
||||
{
|
||||
Vector zero_vec(re_exsol.GetVDim()); zero_vec = 0.0;
|
||||
VectorConstantCoefficient zero_coef(zero_vec);
|
||||
|
||||
real_t err_r = gfr->ComputeL2Error(re_exsol, irs, elems);
|
||||
real_t err_i = gfi->ComputeL2Error(zero_coef, irs, elems);
|
||||
|
||||
return sqrt(err_r * err_r + err_i * err_i);
|
||||
}
|
||||
|
||||
|
||||
ComplexLinearForm::ComplexLinearForm(FiniteElementSpace *fes,
|
||||
ComplexOperator::Convention convention)
|
||||
@@ -731,6 +881,17 @@ ParComplexGridFunction::ProjectCoefficient(Coefficient &real_coeff,
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::ProjectCoefficient(Coefficient &real_coeff)
|
||||
{
|
||||
pgfr->SyncMemory(*this);
|
||||
pgfi->SyncMemory(*this);
|
||||
pgfr->ProjectCoefficient(real_coeff);
|
||||
*pgfi = 0.0;
|
||||
pgfr->SyncAliasMemory(*this);
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::ProjectCoefficient(VectorCoefficient &real_vcoeff,
|
||||
VectorCoefficient &imag_vcoeff)
|
||||
@@ -743,6 +904,17 @@ ParComplexGridFunction::ProjectCoefficient(VectorCoefficient &real_vcoeff,
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::ProjectCoefficient(VectorCoefficient &real_vcoeff)
|
||||
{
|
||||
pgfr->SyncMemory(*this);
|
||||
pgfi->SyncMemory(*this);
|
||||
pgfr->ProjectCoefficient(real_vcoeff);
|
||||
*pgfi = 0.0;
|
||||
pgfr->SyncAliasMemory(*this);
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::ProjectBdrCoefficient(Coefficient &real_coeff,
|
||||
Coefficient &imag_coeff,
|
||||
@@ -756,6 +928,19 @@ ParComplexGridFunction::ProjectBdrCoefficient(Coefficient &real_coeff,
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::ProjectBdrCoefficient(Coefficient &real_coeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
ConstantCoefficient zero_coeff(0.0);
|
||||
pgfr->SyncMemory(*this);
|
||||
pgfi->SyncMemory(*this);
|
||||
pgfr->ProjectBdrCoefficient(real_coeff, attr);
|
||||
pgfi->ProjectBdrCoefficient(zero_coeff, attr);
|
||||
pgfr->SyncAliasMemory(*this);
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::ProjectBdrCoefficientNormal(VectorCoefficient
|
||||
&real_vcoeff,
|
||||
@@ -771,6 +956,21 @@ ParComplexGridFunction::ProjectBdrCoefficientNormal(VectorCoefficient
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::ProjectBdrCoefficientNormal(VectorCoefficient
|
||||
&real_vcoeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
Vector zero_vec(real_vcoeff.GetVDim()); zero_vec = 0.;
|
||||
VectorConstantCoefficient zero_vcoeff(zero_vec);
|
||||
pgfr->SyncMemory(*this);
|
||||
pgfi->SyncMemory(*this);
|
||||
pgfr->ProjectBdrCoefficientNormal(real_vcoeff, attr);
|
||||
pgfi->ProjectBdrCoefficientNormal(zero_vcoeff, attr);
|
||||
pgfr->SyncAliasMemory(*this);
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient
|
||||
&real_vcoeff,
|
||||
@@ -786,6 +986,21 @@ ParComplexGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient
|
||||
&real_vcoeff,
|
||||
Array<int> &attr)
|
||||
{
|
||||
Vector zero_vec(real_vcoeff.GetVDim()); zero_vec = 0.;
|
||||
VectorConstantCoefficient zero_vcoeff(zero_vec);
|
||||
pgfr->SyncMemory(*this);
|
||||
pgfi->SyncMemory(*this);
|
||||
pgfr->ProjectBdrCoefficientTangent(real_vcoeff, attr);
|
||||
pgfi->ProjectBdrCoefficientTangent(zero_vcoeff, attr);
|
||||
pgfr->SyncAliasMemory(*this);
|
||||
pgfi->SyncAliasMemory(*this);
|
||||
}
|
||||
|
||||
void
|
||||
ParComplexGridFunction::Distribute(const Vector *tv)
|
||||
{
|
||||
@@ -825,6 +1040,31 @@ ParComplexGridFunction::ParallelProject(Vector &tv) const
|
||||
tvi.SyncAliasMemory(tv);
|
||||
}
|
||||
|
||||
real_t
|
||||
ParComplexGridFunction::ComputeL2Error(Coefficient &exsolr,
|
||||
const IntegrationRule *irs[],
|
||||
Array<int> *elems) const
|
||||
{
|
||||
ConstantCoefficient zeroCoef(0.0);
|
||||
|
||||
real_t err_r = pgfr->ComputeL2Error(exsolr, irs, elems);
|
||||
real_t err_i = pgfi->ComputeL2Error(zeroCoef, irs, elems);
|
||||
return sqrt(err_r * err_r + err_i * err_i);
|
||||
}
|
||||
|
||||
real_t
|
||||
ParComplexGridFunction::ComputeL2Error(VectorCoefficient &exsolr,
|
||||
const IntegrationRule *irs[],
|
||||
Array<int> *elems) const
|
||||
{
|
||||
Vector zeroVec(exsolr.GetVDim()); zeroVec = 0.0;
|
||||
VectorConstantCoefficient zeroCoef(zeroVec);
|
||||
|
||||
real_t err_r = pgfr->ComputeL2Error(exsolr, irs, elems);
|
||||
real_t err_i = pgfi->ComputeL2Error(zeroCoef, irs, elems);
|
||||
return sqrt(err_r * err_r + err_i * err_i);
|
||||
}
|
||||
|
||||
|
||||
ParComplexLinearForm::ParComplexLinearForm(ParFiniteElementSpace *pfes,
|
||||
ComplexOperator::Convention
|
||||
|
||||
+1307
-21
File diff suppressed because it is too large
Load Diff
+12
-10
@@ -764,9 +764,9 @@ ParaViewDataCollectionBase::ParaViewDataCollectionBase(
|
||||
{
|
||||
cycle = 0;
|
||||
#ifdef MFEM_USE_ZLIB
|
||||
compression = true; // if we have zlib, enable compression
|
||||
#else
|
||||
compression = false; // otherwise, disable compression
|
||||
// If we have zlib, enable compression. Otherwise, compression is disabled in
|
||||
// the DataCollection base class constructor.
|
||||
compression = true;
|
||||
#endif
|
||||
}
|
||||
|
||||
@@ -784,13 +784,8 @@ void ParaViewDataCollectionBase::SetCompressionLevel(int compression_level_)
|
||||
{
|
||||
MFEM_ASSERT(compression_level_ >= -1 && compression_level_ <= 9,
|
||||
"Compression level must be between -1 and 9 (inclusive).");
|
||||
if (compression_level_ != 0) { SetCompression(true);}
|
||||
compression_level = compression_level_;
|
||||
compression = compression_level_ != 0;
|
||||
}
|
||||
|
||||
void ParaViewDataCollectionBase::SetCompression(bool compression_)
|
||||
{
|
||||
compression = compression_;
|
||||
}
|
||||
|
||||
int ParaViewDataCollectionBase::GetCompressionLevel() const
|
||||
@@ -1174,7 +1169,14 @@ const char *ParaViewDataCollection::GetDataTypeString() const
|
||||
ParaViewHDFDataCollection::ParaViewHDFDataCollection(
|
||||
const std::string &collection_name, Mesh *mesh)
|
||||
: ParaViewDataCollectionBase(collection_name, mesh)
|
||||
{ }
|
||||
{
|
||||
compression = true;
|
||||
}
|
||||
|
||||
void ParaViewHDFDataCollection::SetCompression(bool compression_)
|
||||
{
|
||||
compression = compression_;
|
||||
}
|
||||
|
||||
void ParaViewHDFDataCollection::EnsureVTKHDF()
|
||||
{
|
||||
|
||||
@@ -537,13 +537,6 @@ public:
|
||||
/// Any nonzero compression level will enable compression.
|
||||
void SetCompressionLevel(int compression_level_);
|
||||
|
||||
/// @brief Enable or disable zlib compression.
|
||||
///
|
||||
/// If the input is true, use the default zlib compression level (unless the
|
||||
/// compression level has previously been set by calling
|
||||
/// SetCompressionLevel()).
|
||||
void SetCompression(bool compression_) override;
|
||||
|
||||
/// @brief Sets whether or not to output the data as high-order elements
|
||||
/// (false by default).
|
||||
///
|
||||
@@ -633,6 +626,12 @@ public:
|
||||
ParaViewHDFDataCollection(const std::string& collection_name,
|
||||
Mesh *mesh_ = nullptr);
|
||||
|
||||
/// @brief Enable or disable compression.
|
||||
///
|
||||
/// The compression level can be set with SetCompressionLevel()). VTKHDF
|
||||
/// compression does not require MFEM to be compiled with zlib support.
|
||||
void SetCompression(bool compression_) override;
|
||||
|
||||
/// Save the collection.
|
||||
void Save() override;
|
||||
|
||||
|
||||
@@ -241,6 +241,7 @@ public:
|
||||
{
|
||||
MFEM_ASSERT(!action_callbacks.empty(), "no integrators have been set");
|
||||
prolongation(solutions, solutions_t, solutions_l);
|
||||
residual_l = 0.0;
|
||||
for (auto &action : action_callbacks)
|
||||
{
|
||||
action(solutions_l, parameters_l, residual_l);
|
||||
|
||||
@@ -101,10 +101,11 @@ public:
|
||||
// Setup DofToQuad information
|
||||
dtq.nqpt = (int)floor(std::pow(ir.GetNPoints(), 1.0 / mesh.Dimension()) + 0.5);
|
||||
dtq.ndof = dtq.nqpt;
|
||||
dtq.mode = used_in_tensor_product ? DofToQuad::TENSOR : DofToQuad::FULL;
|
||||
|
||||
// Calculate sizes
|
||||
const int num_qp = used_in_tensor_product ?
|
||||
std::pow(dtq.nqpt, mesh.Dimension()) :
|
||||
static_cast<int>(std::pow(dtq.nqpt, mesh.Dimension())) :
|
||||
ir.GetNPoints();
|
||||
|
||||
tsize = vdim * num_qp * mesh.GetNE();
|
||||
|
||||
+9
-8
@@ -987,7 +987,7 @@ get_restriction_transpose(
|
||||
{
|
||||
auto RT = [=](const Vector &v_e, Vector &v_l)
|
||||
{
|
||||
v_l = v_e;
|
||||
v_l += v_e;
|
||||
};
|
||||
return std::make_tuple(RT, 1);
|
||||
}
|
||||
@@ -996,7 +996,7 @@ get_restriction_transpose(
|
||||
const Operator *R = get_restriction<entity_t>(f, o);
|
||||
std::function<void(const Vector&, Vector&)> RT = [=](const Vector &x, Vector &y)
|
||||
{
|
||||
R->MultTranspose(x, y);
|
||||
R->AddMultTranspose(x, y);
|
||||
};
|
||||
return std::make_tuple(RT, R->Height());
|
||||
}
|
||||
@@ -1702,12 +1702,13 @@ std::array<DofToQuadMap, N> load_dtq_mem(
|
||||
std::array<DofToQuadMap, N> f;
|
||||
for (std::size_t i = 0; i < N; i++)
|
||||
{
|
||||
const auto [nqp_b, dim_b, ndof_b] = dtq[i].B.GetShape();
|
||||
const auto B = Reshape(&dtq[i].B[0], nqp_b, dim_b, ndof_b);
|
||||
auto mem_Bi = Reshape(reinterpret_cast<real_t *>(mem) + offset, nqp_b, dim_b,
|
||||
ndof_b);
|
||||
if (dtq[i].which_input != -1)
|
||||
{
|
||||
const auto [nqp_b, dim_b, ndof_b] = dtq[i].B.GetShape();
|
||||
const auto B = Reshape(&dtq[i].B[0], nqp_b, dim_b, ndof_b);
|
||||
auto mem_Bi = Reshape(reinterpret_cast<real_t *>(mem) + offset, nqp_b, dim_b,
|
||||
ndof_b);
|
||||
|
||||
MFEM_FOREACH_THREAD(q, x, nqp_b)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(d, y, ndof_b)
|
||||
@@ -2158,7 +2159,7 @@ template <
|
||||
std::size_t... Is>
|
||||
std::array<DofToQuadMap, N> create_dtq_maps_impl(
|
||||
field_operator_ts &fops,
|
||||
std::vector<const DofToQuad*> dtqs,
|
||||
std::vector<const DofToQuad*> &dtqs,
|
||||
const std::array<int, N> &field_map,
|
||||
std::index_sequence<Is...>)
|
||||
{
|
||||
@@ -2243,7 +2244,7 @@ template <
|
||||
std::size_t num_fields>
|
||||
std::array<DofToQuadMap, num_fields> create_dtq_maps(
|
||||
field_operator_ts &fops,
|
||||
std::vector<const DofToQuad*> dtqmaps,
|
||||
std::vector<const DofToQuad*> &dtqmaps,
|
||||
const std::array<int, num_fields> &to_field_map)
|
||||
{
|
||||
return create_dtq_maps_impl<entity_t>(
|
||||
|
||||
@@ -20,6 +20,16 @@ namespace mfem
|
||||
|
||||
using namespace std;
|
||||
|
||||
DofToQuad DofToQuad::Abs() const
|
||||
{
|
||||
DofToQuad d2q(*this);
|
||||
d2q.B.Abs();
|
||||
d2q.Bt.Abs();
|
||||
d2q.G.Abs();
|
||||
d2q.Gt.Abs();
|
||||
return d2q;
|
||||
}
|
||||
|
||||
FiniteElement::FiniteElement(int D, Geometry::Type G,
|
||||
int Do, int O, int F)
|
||||
: Nodes(Do)
|
||||
|
||||
@@ -219,6 +219,9 @@ public:
|
||||
- #ndof x #nqpt, for H(div) vector elements, or
|
||||
- #ndof x #nqpt x cdim, for H(curl) vector elements. */
|
||||
Array<real_t> Gt;
|
||||
|
||||
/// Returns absolute value of the maps
|
||||
DofToQuad Abs() const;
|
||||
};
|
||||
|
||||
/// Describes the function space on each element
|
||||
|
||||
@@ -49,6 +49,7 @@
|
||||
#include "lor/lor.hpp"
|
||||
#include "dgmassinv.hpp"
|
||||
#include "hyperbolic.hpp"
|
||||
#include "bounds.hpp"
|
||||
|
||||
#include "dfem/doperator.hpp"
|
||||
|
||||
|
||||
@@ -4278,9 +4278,6 @@ void FiniteElementSpace::Update(bool want_transform)
|
||||
void FiniteElementSpace::PRefineAndUpdate(const Array<pRefinement> & refs,
|
||||
bool want_transfer)
|
||||
{
|
||||
MFEM_VERIFY(PRefinementSupported(),
|
||||
"p-refinement is not supported in this space");
|
||||
|
||||
if (want_transfer)
|
||||
{
|
||||
fesPrev.reset(new FiniteElementSpace(mesh, fec, vdim, ordering));
|
||||
|
||||
+132
-1
@@ -4334,7 +4334,7 @@ real_t LSZZErrorEstimator(BilinearFormIntegrator &blfi, // input
|
||||
u.GetSubVector(udofs, ul);
|
||||
utrans.InvTransformPrimal(ul);
|
||||
Transf = ufes->GetElementTransformation(ielem);
|
||||
FiniteElement *dummy = nullptr;
|
||||
const auto *dummy = ufes->GetFE(ielem);
|
||||
blfi.ComputeElementFlux(*ufes->GetFE(ielem), *Transf, ul,
|
||||
*dummy, fl, with_coeff, ir);
|
||||
|
||||
@@ -4563,4 +4563,135 @@ GridFunction *Extrude1DGridFunction(Mesh *mesh, Mesh *mesh2d,
|
||||
return sol2d;
|
||||
}
|
||||
|
||||
void GridFunction::GetElementBoundsAtControlPoints(const int elem,
|
||||
const PLBound &plb,
|
||||
Vector &lower, Vector &upper,
|
||||
const int vdim)
|
||||
{
|
||||
const FiniteElement *fe = fes->GetFE(elem);
|
||||
int fes_dim = fes->GetVDim();
|
||||
int rdim = fe->GetDim();
|
||||
|
||||
const TensorBasisElement *tbe =
|
||||
dynamic_cast<const TensorBasisElement *>(fe);
|
||||
MFEM_VERIFY(tbe != NULL, "TensorBasis FiniteElement expected.");
|
||||
const Array<int> &dof_map = tbe->GetDofMap();
|
||||
|
||||
Vector loc_data;
|
||||
Array<int> dof_idx;
|
||||
fes->GetElementDofs(elem, dof_idx);
|
||||
int ndofs = dof_idx.Size();
|
||||
|
||||
int n_c_pts = std::pow(plb.GetNControlPoints(), rdim);
|
||||
lower.SetSize(n_c_pts*(vdim > 0 ? 1 : fes_dim));
|
||||
upper.SetSize(n_c_pts*(vdim > 0 ? 1 : fes_dim));
|
||||
|
||||
for (int d = 0; d < fes_dim; d++)
|
||||
{
|
||||
if (vdim > 0 && d != vdim-1) { continue; }
|
||||
const int d_off = vdim > 0 ? 0 : d;
|
||||
Array<int> dof_idx_c = dof_idx;
|
||||
Vector lowerT(lower, d_off*n_c_pts, n_c_pts);
|
||||
Vector upperT(upper, d_off*n_c_pts, n_c_pts);
|
||||
fes->DofsToVDofs(vdim > 0 ? vdim-1 : d, dof_idx_c);
|
||||
GetSubVector(dof_idx_c, loc_data);
|
||||
Vector nodal_data;
|
||||
if (dof_map.Size() == 0)
|
||||
{
|
||||
nodal_data.SetDataAndSize(loc_data.GetData(), ndofs);
|
||||
}
|
||||
else
|
||||
{
|
||||
nodal_data.SetSize(ndofs);
|
||||
for (int j = 0; j < ndofs; j++)
|
||||
{
|
||||
nodal_data(j) = loc_data(dof_map[j]);
|
||||
}
|
||||
}
|
||||
plb.GetNDBounds(rdim, nodal_data, lowerT, upperT);
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunction::GetElementBounds(const int elem, const PLBound &plb,
|
||||
Vector &lower, Vector &upper,
|
||||
const int vdim)
|
||||
{
|
||||
Vector lowerC, upperC;
|
||||
GetElementBoundsAtControlPoints(elem, plb, lowerC, upperC, vdim);
|
||||
const FiniteElement *fe = fes->GetFE(elem);
|
||||
int rdim = fe->GetDim();
|
||||
int n_c_pts = std::pow(plb.GetNControlPoints(), rdim);
|
||||
int fes_dim = fes->GetVDim();
|
||||
lower.SetSize((vdim > 0 ? 1 :fes_dim));
|
||||
upper.SetSize((vdim > 0 ? 1 :fes_dim));
|
||||
for (int d = 0; d < fes_dim; d++)
|
||||
{
|
||||
if (vdim > 0 && d != vdim-1) { continue; }
|
||||
const int d_off = vdim > 0 ? 0 : d;
|
||||
Vector lowerT(lowerC, d_off*n_c_pts, n_c_pts);
|
||||
Vector upperT(upperC, d_off*n_c_pts, n_c_pts);
|
||||
lower(d_off) = lowerT.Min();
|
||||
upper(d_off) = upperT.Max();
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunction::GetElementBounds(const PLBound &plb,
|
||||
Vector &lower, Vector &upper,
|
||||
const int vdim)
|
||||
{
|
||||
int nel = fes->GetNE();
|
||||
int fes_dim = fes->GetVDim();
|
||||
lower.SetSize(nel*(vdim > 0 ? 1 :fes_dim));
|
||||
upper.SetSize(nel*(vdim > 0 ? 1 :fes_dim));
|
||||
for (int e = 0; e < nel; e++)
|
||||
{
|
||||
Vector lt, ut;
|
||||
GetElementBounds(e, plb, lt, ut, vdim);
|
||||
for (int d = 0; d < fes_dim ; d++)
|
||||
{
|
||||
if (vdim > 0 && d != vdim-1) { continue; }
|
||||
const int d_off = vdim > 0 ? 0 : d;
|
||||
lower(e + d_off*nel) = lt(d_off);
|
||||
upper(e + d_off*nel) = ut(d_off);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
PLBound GridFunction::GetElementBounds(Vector &lower,
|
||||
Vector &upper,
|
||||
const int ref_factor,
|
||||
const int vdim)
|
||||
{
|
||||
int max_order = fes->GetMaxElementOrder();
|
||||
PLBound plb(fes, ref_factor*(max_order+1));
|
||||
GetElementBounds(plb, lower, upper, vdim);
|
||||
return plb;
|
||||
}
|
||||
|
||||
PLBound GridFunction::GetBounds(Vector &lower, Vector &upper,
|
||||
const int ref_factor, const int vdim)
|
||||
{
|
||||
int max_order = fes->GetMaxElementOrder();
|
||||
PLBound plb(fes, ref_factor*(max_order+1));
|
||||
Vector lel, uel;
|
||||
GetElementBounds(plb, lel, uel, vdim);
|
||||
|
||||
int nel = fes->GetNE();
|
||||
int fes_dim = fes->GetVDim();
|
||||
lower.SetSize(vdim > 0 ? 1 : fes_dim);
|
||||
upper.SetSize(vdim > 0 ? 1 : fes_dim);
|
||||
for (int d = 0; d < fes_dim; d++)
|
||||
{
|
||||
if (vdim > 0 && d != vdim-1) { continue; }
|
||||
const int d_off = vdim > 0 ? 0 : d;
|
||||
Vector lelt(lel, d_off*nel, nel);
|
||||
Vector uelt(uel, d_off*nel, nel);
|
||||
lower(d_off) = lelt.Min();
|
||||
upper(d_off) = uelt.Max();
|
||||
}
|
||||
return plb;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
+47
-1
@@ -16,6 +16,7 @@
|
||||
#include "fespace.hpp"
|
||||
#include "coefficient.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "bounds.hpp"
|
||||
#ifdef MFEM_USE_ADIOS2
|
||||
#include "../general/adios2stream.hpp"
|
||||
#endif
|
||||
@@ -1561,11 +1562,56 @@ public:
|
||||
must be 2 and that quad elements will be broken into two triangles.*/
|
||||
void SaveSTL(std::ostream &out, int TimesToRefine = 1);
|
||||
|
||||
/** @name Methods to compute bounds on the grid function
|
||||
\brief See bounds.hpp for \ref PLBound that constructs piecewise linear
|
||||
bounds for a given set of bases. These piecewise bounds can be used to compute bounds on a grid function. Currently tensor-product elements are
|
||||
supported with Lagrange interpolants on Gauss Legendre nodes and Gauss Lobatto Legendre nodes, and Bernstein bases.
|
||||
*/
|
||||
///@{
|
||||
/// Computes the \ref PLBound for the gridfunction with number of control
|
||||
/// points based on @a ref_factor, and returns the overall bounds for each
|
||||
/// vdim (across all elements) in @b lower and @b upper. We also return the
|
||||
/// PLBound object used to compute the bounds.
|
||||
/// We compute the bounds for each vdim if @a vdim < 1.
|
||||
/// Note: For most cases, this method/interface will be sufficient.
|
||||
virtual PLBound GetBounds(Vector &lower, Vector &upper,
|
||||
const int ref_factor=1, const int vdim=-1);
|
||||
|
||||
/// Computes the \ref PLBound for the gridfunction with number of control
|
||||
/// points based on @a ref_factor, and returns the bounds for each element
|
||||
/// ordered byVDim:
|
||||
/// lower_{0,0}, lower_{1,0}, ..., lower_{ne-1,0},
|
||||
/// lower_{0,1}, ..., lower_{ne-1,vdim-1}. We also return the
|
||||
/// PLBound object used to compute the bounds.
|
||||
/// We compute the bounds for each vdim if @a vdim < 1.
|
||||
PLBound GetElementBounds(Vector &lower, Vector &upper,
|
||||
const int ref_factor=1, const int vdim=-1);
|
||||
|
||||
/// Compute piecewise linear bounds on the given element at the grid of
|
||||
/// [plb.ncp x plb.ncp x plb.ncp] control points for each of the vdim
|
||||
/// components of the gridfunction.
|
||||
void GetElementBoundsAtControlPoints(const int elem, const PLBound &plb,
|
||||
Vector &lower, Vector &upper,
|
||||
const int vdim = -1);
|
||||
|
||||
/// Compute bounds on the grid function for the given element.
|
||||
/// The bounds are stored in @b lower and @b upper.
|
||||
void GetElementBounds(const int elem, const PLBound &plb,
|
||||
Vector &lower, Vector &upper,
|
||||
const int vdim = -1);
|
||||
|
||||
/// Compute bounds on the grid function for all the elements. The bounds
|
||||
/// are returned in @b lower and @b upper, ordered byVDim:
|
||||
/// lower_{0,0}, lower_{1,0}, ..., lower_{ne-1,0},
|
||||
/// lower_{0,1}, ..., lower_{ne-1,vdim-1}
|
||||
void GetElementBounds(const PLBound &plb, Vector &lower, Vector &upper,
|
||||
const int vdim=-1);
|
||||
///@}
|
||||
|
||||
/// Destroys grid function.
|
||||
virtual ~GridFunction() { Destroy(); }
|
||||
};
|
||||
|
||||
|
||||
/** Overload operator<< for std::ostream and GridFunction; valid also for the
|
||||
derived class ParGridFunction */
|
||||
std::ostream &operator<<(std::ostream &out, const GridFunction &sol);
|
||||
|
||||
+3
-1
@@ -30,7 +30,9 @@ namespace mfem
|
||||
{
|
||||
|
||||
/** \brief FindPointsGSLIB can robustly evaluate a GridFunction on an arbitrary
|
||||
* collection of points.
|
||||
* collection of points. See Mittal et al., "General Field Evaluation in
|
||||
* High-Order Meshes on GPUs". (2025). Computers & Fluids. for technical
|
||||
* details.
|
||||
*
|
||||
* There are three key functions in FindPointsGSLIB:
|
||||
*
|
||||
|
||||
@@ -202,4 +202,68 @@ void CurlCurlIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
}
|
||||
}
|
||||
|
||||
void CurlCurlIntegrator::AddAbsMultPA(const Vector &x, Vector &y) const
|
||||
{
|
||||
Vector abs_pa_data(pa_data);
|
||||
abs_pa_data.Abs();
|
||||
auto absO = mapsO->Abs();
|
||||
auto absC = mapsC->Abs();
|
||||
|
||||
if (dim == 3)
|
||||
{
|
||||
if (Device::Allows(Backend::DEVICE_MASK))
|
||||
{
|
||||
const int ID = (dofs1D << 4) | quad1D;
|
||||
switch (ID)
|
||||
{
|
||||
case 0x23:
|
||||
return internal::SmemPACurlCurlApply3D<2,3>(
|
||||
dofs1D, quad1D,
|
||||
symmetric, ne,
|
||||
absO.B, absC.B, absO.Bt, absC.Bt,
|
||||
absC.G, absC.Gt, abs_pa_data, x, y, true);
|
||||
case 0x34:
|
||||
return internal::SmemPACurlCurlApply3D<3,4>(
|
||||
dofs1D, quad1D,
|
||||
symmetric, ne,
|
||||
absO.B, absC.B, absO.Bt, absC.Bt,
|
||||
absC.G, absC.Gt, abs_pa_data, x, y, true);
|
||||
case 0x45:
|
||||
return internal::SmemPACurlCurlApply3D<4,5>(
|
||||
dofs1D, quad1D,
|
||||
symmetric, ne,
|
||||
absO.B, absC.B, absO.Bt, absC.Bt,
|
||||
absC.G, absC.Gt, abs_pa_data, x, y, true);
|
||||
case 0x56:
|
||||
return internal::SmemPACurlCurlApply3D<5,6>(
|
||||
dofs1D, quad1D,
|
||||
symmetric, ne,
|
||||
absO.B, absC.B, absO.Bt, absC.Bt,
|
||||
absC.G, absC.Gt, abs_pa_data, x, y, true);
|
||||
default:
|
||||
return internal::SmemPACurlCurlApply3D<0,0>(
|
||||
dofs1D, quad1D, symmetric, ne,
|
||||
absO.B, absC.B, absO.Bt, absC.Bt,
|
||||
absC.G, absC.Gt, abs_pa_data, x, y, true);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
internal::PACurlCurlApply3D<0,0>(
|
||||
dofs1D, quad1D, symmetric, ne,
|
||||
absO.B, absC.B, absO.Bt, absC.Bt, absC.G, absC.Gt,
|
||||
abs_pa_data, x, y, true);
|
||||
}
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
internal::PACurlCurlApply2D(dofs1D, quad1D, ne, absO.B, absO.Bt,
|
||||
absC.G, absC.Gt, abs_pa_data, x, y, true);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Unsupported dimension!");
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -483,19 +483,6 @@ inline void SmemPADiffusionDiagonal3D(const int NE,
|
||||
});
|
||||
}
|
||||
|
||||
void PADiffusionApply(const int dim,
|
||||
const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const bool symm,
|
||||
const Array<real_t> &B,
|
||||
const Array<real_t> &G,
|
||||
const Array<real_t> &Bt,
|
||||
const Array<real_t> &Gt,
|
||||
const Vector &D,
|
||||
const Vector &X,
|
||||
Vector &Y);
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
// OCCA PA Diffusion Apply 2D kernel
|
||||
void OccaPADiffusionApply2D(const int D1D,
|
||||
@@ -1022,6 +1009,7 @@ inline void SmemPADiffusionApply3D(const int NE,
|
||||
auto d = Reshape(d_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
MFEM_VERIFY(D1D <= Q1D, "THREAD_DIRECT requires D1D <= Q1D");
|
||||
mfem::forall_3D(NE, Q1D, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
@@ -1051,11 +1039,11 @@ inline void SmemPADiffusionApply3D(const int NE,
|
||||
real_t (*QDD0)[MD1][MD1] = (real_t (*)[MD1][MD1]) (sm0+0);
|
||||
real_t (*QDD1)[MD1][MD1] = (real_t (*)[MD1][MD1]) (sm0+1);
|
||||
real_t (*QDD2)[MD1][MD1] = (real_t (*)[MD1][MD1]) (sm0+2);
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dx,x,D1D)
|
||||
{
|
||||
X[dz][dy][dx] = x(dx,dy,dz,e);
|
||||
}
|
||||
@@ -1063,9 +1051,9 @@ inline void SmemPADiffusionApply3D(const int NE,
|
||||
}
|
||||
if (MFEM_THREAD_ID(z) == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx,x,Q1D)
|
||||
{
|
||||
B[qx][dy] = b(qx,dy);
|
||||
G[qx][dy] = g(qx,dy);
|
||||
@@ -1073,11 +1061,11 @@ inline void SmemPADiffusionApply3D(const int NE,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx,x,Q1D)
|
||||
{
|
||||
real_t u = 0.0, v = 0.0;
|
||||
MFEM_UNROLL(MD1)
|
||||
@@ -1093,11 +1081,11 @@ inline void SmemPADiffusionApply3D(const int NE,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx,x,Q1D)
|
||||
{
|
||||
real_t u = 0.0, v = 0.0, w = 0.0;
|
||||
MFEM_UNROLL(MD1)
|
||||
@@ -1114,11 +1102,11 @@ inline void SmemPADiffusionApply3D(const int NE,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx,x,Q1D)
|
||||
{
|
||||
real_t u = 0.0, v = 0.0, w = 0.0;
|
||||
MFEM_UNROLL(MD1)
|
||||
@@ -1149,9 +1137,9 @@ inline void SmemPADiffusionApply3D(const int NE,
|
||||
MFEM_SYNC_THREAD;
|
||||
if (MFEM_THREAD_ID(z) == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx,x,Q1D)
|
||||
{
|
||||
Bt[dy][qx] = b(qx,dy);
|
||||
Gt[dy][qx] = g(qx,dy);
|
||||
@@ -1159,11 +1147,11 @@ inline void SmemPADiffusionApply3D(const int NE,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0, v = 0.0, w = 0.0;
|
||||
MFEM_UNROLL(MQ1)
|
||||
@@ -1180,11 +1168,11 @@ inline void SmemPADiffusionApply3D(const int NE,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0, v = 0.0, w = 0.0;
|
||||
MFEM_UNROLL(Q1D)
|
||||
@@ -1201,11 +1189,11 @@ inline void SmemPADiffusionApply3D(const int NE,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD_DIRECT(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0, v = 0.0, w = 0.0;
|
||||
MFEM_UNROLL(MQ1)
|
||||
|
||||
@@ -164,6 +164,36 @@ void DiffusionIntegrator::AssemblePatchPA(const int patch,
|
||||
SetupPatchPA(patch, mesh); // For full quadrature, unitWeights = false
|
||||
}
|
||||
|
||||
void DiffusionIntegrator::AddAbsMultPA(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
MFEM_ABORT("Ceed AbsMult not implemented yet");
|
||||
}
|
||||
Vector abs_pa_data(pa_data);
|
||||
abs_pa_data.Abs();
|
||||
auto abs_maps = maps->Abs();
|
||||
|
||||
ApplyPAKernels::Run(dim, dofs1D, quad1D, ne, symmetric,
|
||||
abs_maps.B, abs_maps.G, abs_maps.Bt, abs_maps.Gt,
|
||||
abs_pa_data, x, y, dofs1D, quad1D);
|
||||
}
|
||||
|
||||
void DiffusionIntegrator::AddAbsMultTransposePA(const Vector &x,
|
||||
Vector &y) const
|
||||
{
|
||||
if (symmetric)
|
||||
{
|
||||
AddAbsMultPA(x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("DiffusionIntegrator::AddAbsMultTransposePA only implemented "
|
||||
"in the symmetric case.")
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
// This version uses full 1D quadrature rules, taking into account the
|
||||
// minimum interaction between basis functions and integration points.
|
||||
void DiffusionIntegrator::AddMultPatchPA(const int patch, const Vector &x,
|
||||
|
||||
@@ -212,7 +212,7 @@ void ElasticityAddMultPA_(const int nDofs, const FiniteElementSpace &fespace,
|
||||
const int iIndex = isComponent ? 0 : i;
|
||||
div += gradx(iIndex,i);
|
||||
}
|
||||
const real_t w = ipWeights[p] /det(invJ);
|
||||
const real_t w = ipWeights[p]/det(invJ);
|
||||
for (int m = 0; m < d; m++)
|
||||
{
|
||||
for (int q = qLower; q < qUpper; q++)
|
||||
@@ -226,8 +226,8 @@ void ElasticityAddMultPA_(const int nDofs, const FiniteElementSpace &fespace,
|
||||
{
|
||||
for (int a = 0; a < d; a++)
|
||||
{
|
||||
contraction += 2*((a == q)*invJ(m,j_block) + (j_block==q)*invJ(m,a))*(gradx(0,
|
||||
a));
|
||||
contraction += 2*((a == q)*invJ(m,j_block)
|
||||
+ (j_block==q)*invJ(m,a))*(gradx(0, a));
|
||||
}
|
||||
}
|
||||
else
|
||||
@@ -236,7 +236,7 @@ void ElasticityAddMultPA_(const int nDofs, const FiniteElementSpace &fespace,
|
||||
{
|
||||
for (int b = 0; b < d; b++)
|
||||
{
|
||||
contraction += ((a == q)*invJ(m,b) + (b==q)*invJ(m,a))
|
||||
contraction += ((a == q)*invJ(m,b) + (b == q)*invJ(m,a))
|
||||
*(gradx(a,b) + gradx(b, a));
|
||||
}
|
||||
}
|
||||
@@ -244,7 +244,8 @@ void ElasticityAddMultPA_(const int nDofs, const FiniteElementSpace &fespace,
|
||||
// lambda*div(u)*div(v) + 2*mu*sym(grad(u))*sym(grad(v))
|
||||
// contraction = 4*sym(grad(u))sym(grad(v))
|
||||
const int qIndex = isComponent ? 0 : q;
|
||||
Q(p,m,qIndex,e) = w*(lamDev(p, e)*invJ(m,q)*div + 0.5*muDev(p, e)*contraction);
|
||||
Q(p,m,qIndex,e) = w*(lamDev(p, e)*invJ(m,q)*div
|
||||
+ 0.5*muDev(p, e)*contraction);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -662,7 +662,8 @@ void PACurlCurlApply2D(const int D1D,
|
||||
const Array<real_t> &gct,
|
||||
const Vector &pa_data,
|
||||
const Vector &x,
|
||||
Vector &y)
|
||||
Vector &y,
|
||||
const bool useAbs)
|
||||
{
|
||||
|
||||
auto Bo = Reshape(bo.Read(), Q1D, D1D-1);
|
||||
@@ -717,7 +718,8 @@ void PACurlCurlApply2D(const int D1D,
|
||||
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const real_t wy = (c == 0) ? -Gc(qy,dy) : Bo(qy,dy);
|
||||
const int sign = useAbs ? 1 : -1;
|
||||
const real_t wy = (c == 0) ? (sign*Gc(qy,dy)) : Bo(qy,dy);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
curl[qy][qx] += gradX[qx] * wy;
|
||||
@@ -760,7 +762,8 @@ void PACurlCurlApply2D(const int D1D,
|
||||
}
|
||||
for (int dy = 0; dy < D1Dy; ++dy)
|
||||
{
|
||||
const real_t wy = (c == 0) ? -Gct(dy,qy) : Bot(dy,qy);
|
||||
const int sign = useAbs ? 1 : -1;
|
||||
const real_t wy = (c == 0) ? (sign*Gct(dy,qy)) : Bot(dy,qy);
|
||||
|
||||
for (int dx = 0; dx < D1Dx; ++dx)
|
||||
{
|
||||
|
||||
@@ -828,7 +828,7 @@ inline void SmemPACurlCurlAssembleDiagonal3D(const int d1d,
|
||||
}); // end of element loop
|
||||
}
|
||||
|
||||
// PA H(curl) curl-curl Apply 2D kernel
|
||||
// PA H(curl) curl-curl Apply/AbsApply 2D kernel
|
||||
void PACurlCurlApply2D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
@@ -838,9 +838,10 @@ void PACurlCurlApply2D(const int D1D,
|
||||
const Array<real_t> &gct,
|
||||
const Vector &pa_data,
|
||||
const Vector &x,
|
||||
Vector &y);
|
||||
Vector &y,
|
||||
const bool useAbs = false);
|
||||
|
||||
// PA H(curl) curl-curl Apply 3D kernel
|
||||
// PA H(curl) curl-curl Apply/AbsApply 3D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void PACurlCurlApply3D(const int d1d,
|
||||
const int q1d,
|
||||
@@ -854,7 +855,8 @@ inline void PACurlCurlApply3D(const int d1d,
|
||||
const Array<real_t> &gct,
|
||||
const Vector &pa_data,
|
||||
const Vector &x,
|
||||
Vector &y)
|
||||
Vector &y,
|
||||
const bool useAbs = false)
|
||||
{
|
||||
MFEM_VERIFY(T_D1D || d1d <= DeviceDofQuadLimits::Get().HCURL_MAX_D1D,
|
||||
"Error: d1d > HCURL_MAX_D1D");
|
||||
@@ -970,7 +972,16 @@ inline void PACurlCurlApply3D(const int d1d,
|
||||
{
|
||||
// \hat{\nabla}\times\hat{u} is [0, (u_0)_{x_2}, -(u_0)_{x_1}]
|
||||
curl[qz][qy][qx][1] += gradXY[qy][qx][1] * wDz; // (u_0)_{x_2}
|
||||
curl[qz][qy][qx][2] -= gradXY[qy][qx][0] * wz; // -(u_0)_{x_1}
|
||||
if (useAbs)
|
||||
{
|
||||
// +(u_0)_{x_1}
|
||||
curl[qz][qy][qx][2] += gradXY[qy][qx][0] * wz;
|
||||
}
|
||||
else
|
||||
{
|
||||
// -(u_0)_{x_1}
|
||||
curl[qz][qy][qx][2] -= gradXY[qy][qx][0] * wz;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1038,7 +1049,16 @@ inline void PACurlCurlApply3D(const int d1d,
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
// \hat{\nabla}\times\hat{u} is [-(u_1)_{x_2}, 0, (u_1)_{x_0}]
|
||||
curl[qz][qy][qx][0] -= gradXY[qy][qx][1] * wDz; // -(u_1)_{x_2}
|
||||
if (useAbs)
|
||||
{
|
||||
// +(u_1)_{x_2}
|
||||
curl[qz][qy][qx][0] += gradXY[qy][qx][1] * wDz;
|
||||
}
|
||||
else
|
||||
{
|
||||
// -(u_1)_{x_2}
|
||||
curl[qz][qy][qx][0] -= gradXY[qy][qx][1] * wDz;
|
||||
}
|
||||
curl[qz][qy][qx][2] += gradXY[qy][qx][0] * wz; // (u_1)_{x_0}
|
||||
}
|
||||
}
|
||||
@@ -1109,7 +1129,16 @@ inline void PACurlCurlApply3D(const int d1d,
|
||||
{
|
||||
// \hat{\nabla}\times\hat{u} is [(u_2)_{x_1}, -(u_2)_{x_0}, 0]
|
||||
curl[qz][qy][qx][0] += gradYZ[qz][qy][1] * wx; // (u_2)_{x_1}
|
||||
curl[qz][qy][qx][1] -= gradYZ[qz][qy][0] * wDx; // -(u_2)_{x_0}
|
||||
if (useAbs)
|
||||
{
|
||||
// +(u_2)_{x_0}
|
||||
curl[qz][qy][qx][1] += gradYZ[qz][qy][0] * wDx;
|
||||
}
|
||||
else
|
||||
{
|
||||
// -(u_2)_{x_0}
|
||||
curl[qz][qy][qx][1] -= gradYZ[qz][qy][0] * wDx;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1209,9 +1238,21 @@ inline void PACurlCurlApply3D(const int d1d,
|
||||
for (int dx = 0; dx < D1Dx; ++dx)
|
||||
{
|
||||
// \hat{\nabla}\times\hat{u} is [0, (u_0)_{x_2}, -(u_0)_{x_1}]
|
||||
// (u_0)_{x_2} * (op * curl)_1 - (u_0)_{x_1} * (op * curl)_2
|
||||
Y(dx + ((dy + (dz * D1Dy)) * D1Dx) + osc,
|
||||
e) += (gradXY21[dy][dx] * wDz) - (gradXY12[dy][dx] * wz);
|
||||
const int idx = dx + ((dy + (dz * D1Dy)) * D1Dx) + osc;
|
||||
if (useAbs)
|
||||
{
|
||||
// (u_0)_{x_2} * (op * curl)_1 +
|
||||
// (u_0)_{x_1} * (op * curl)_2
|
||||
Y(idx, e) += (gradXY21[dy][dx] * wDz) +
|
||||
(gradXY12[dy][dx] * wz);
|
||||
}
|
||||
else
|
||||
{
|
||||
// (u_0)_{x_2} * (op * curl)_1 -
|
||||
// (u_0)_{x_1} * (op * curl)_2
|
||||
Y(idx, e) += (gradXY21[dy][dx] * wDz) -
|
||||
(gradXY12[dy][dx] * wz);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1278,10 +1319,22 @@ inline void PACurlCurlApply3D(const int d1d,
|
||||
{
|
||||
for (int dx = 0; dx < D1Dx; ++dx)
|
||||
{
|
||||
const int idx = dx + ((dy + (dz * D1Dy)) * D1Dx) + osc;
|
||||
// \hat{\nabla}\times\hat{u} is [-(u_1)_{x_2}, 0, (u_1)_{x_0}]
|
||||
// -(u_1)_{x_2} * (op * curl)_0 + (u_1)_{x_0} * (op * curl)_2
|
||||
Y(dx + ((dy + (dz * D1Dy)) * D1Dx) + osc,
|
||||
e) += (-gradXY20[dy][dx] * wDz) + (gradXY02[dy][dx] * wz);
|
||||
if (useAbs)
|
||||
{
|
||||
// +(u_1)_{x_2} * (op * curl)_0 +
|
||||
// (u_1)_{x_0} * (op * curl)_2
|
||||
Y(idx, e) += (gradXY20[dy][dx] * wDz) +
|
||||
(gradXY02[dy][dx] * wz);
|
||||
}
|
||||
else
|
||||
{
|
||||
// -(u_1)_{x_2} * (op * curl)_0 +
|
||||
// (u_1)_{x_0} * (op * curl)_2
|
||||
Y(idx, e) += (-gradXY20[dy][dx] * wDz) +
|
||||
(gradXY02[dy][dx] * wz);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1351,10 +1404,22 @@ inline void PACurlCurlApply3D(const int d1d,
|
||||
{
|
||||
for (int dz = 0; dz < D1Dz; ++dz)
|
||||
{
|
||||
const int idx = dx + ((dy + (dz * D1Dy)) * D1Dx) + osc;
|
||||
// \hat{\nabla}\times\hat{u} is [(u_2)_{x_1}, -(u_2)_{x_0}, 0]
|
||||
// (u_2)_{x_1} * (op * curl)_0 - (u_2)_{x_0} * (op * curl)_1
|
||||
Y(dx + ((dy + (dz * D1Dy)) * D1Dx) + osc,
|
||||
e) += (gradYZ10[dz][dy] * wx) - (gradYZ01[dz][dy] * wDx);
|
||||
if (useAbs)
|
||||
{
|
||||
// (u_2)_{x_1} * (op * curl)_0 +
|
||||
// (u_2)_{x_0} * (op * curl)_1
|
||||
Y(idx, e) += (gradYZ10[dz][dy] * wx) +
|
||||
(gradYZ01[dz][dy] * wDx);
|
||||
}
|
||||
else
|
||||
{
|
||||
// (u_2)_{x_1} * (op * curl)_0 -
|
||||
// (u_2)_{x_0} * (op * curl)_1
|
||||
Y(idx, e) += (gradYZ10[dz][dy] * wx) -
|
||||
(gradYZ01[dz][dy] * wDx);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1363,7 +1428,7 @@ inline void PACurlCurlApply3D(const int d1d,
|
||||
}); // end of element loop
|
||||
}
|
||||
|
||||
// Shared memory PA H(curl) curl-curl Apply 3D kernel
|
||||
// Shared memory PA H(curl) curl-curl Apply/AbsApply 3D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void SmemPACurlCurlApply3D(const int d1d,
|
||||
const int q1d,
|
||||
@@ -1377,7 +1442,8 @@ inline void SmemPACurlCurlApply3D(const int d1d,
|
||||
const Array<real_t> &gct,
|
||||
const Vector &pa_data,
|
||||
const Vector &x,
|
||||
Vector &y)
|
||||
Vector &y,
|
||||
const bool useAbs = false)
|
||||
{
|
||||
MFEM_VERIFY(T_D1D || d1d <= DeviceDofQuadLimits::Get().HCURL_MAX_D1D,
|
||||
"Error: d1d > HCURL_MAX_D1D");
|
||||
@@ -1531,7 +1597,8 @@ inline void SmemPACurlCurlApply3D(const int d1d,
|
||||
}
|
||||
|
||||
curl[qy][qx][1] += v; // (u_0)_{x_2}
|
||||
curl[qy][qx][2] -= u; // -(u_0)_{x_1}
|
||||
if (useAbs) { curl[qy][qx][2] += u; } // +(u_0)_{x_1}
|
||||
else { curl[qy][qx][2] -= u; } // -(u_0)_{x_1}
|
||||
}
|
||||
else if (c == 1) // y component
|
||||
{
|
||||
@@ -1558,7 +1625,8 @@ inline void SmemPACurlCurlApply3D(const int d1d,
|
||||
}
|
||||
}
|
||||
|
||||
curl[qy][qx][0] -= v; // -(u_1)_{x_2}
|
||||
if (useAbs) { curl[qy][qx][0] += v; } // +(u_1)_{x_2}
|
||||
else { curl[qy][qx][0] -= v; } // -(u_1)_{x_2}
|
||||
curl[qy][qx][2] += u; // (u_1)_{x_0}
|
||||
}
|
||||
else // z component
|
||||
@@ -1587,7 +1655,8 @@ inline void SmemPACurlCurlApply3D(const int d1d,
|
||||
}
|
||||
|
||||
curl[qy][qx][0] += v; // (u_2)_{x_1}
|
||||
curl[qy][qx][1] -= u; // -(u_2)_{x_0}
|
||||
if (useAbs) { curl[qy][qx][1] += u; }// +(u_2)_{x_0}
|
||||
else { curl[qy][qx][1] -= u; } // -(u_2)_{x_0}
|
||||
}
|
||||
} // qx
|
||||
} // qy
|
||||
@@ -1642,18 +1711,54 @@ inline void SmemPACurlCurlApply3D(const int d1d,
|
||||
if (dx < D1D-1)
|
||||
{
|
||||
// \hat{\nabla}\times\hat{u} is [0, (u_0)_{x_2}, -(u_0)_{x_1}]
|
||||
// (u_0)_{x_2} * (op * curl)_1 - (u_0)_{x_1} * (op * curl)_2
|
||||
const real_t wx = sBo[dx][qx];
|
||||
dxyz1 += (wx * c2 * wcy * wcDz) - (wx * c3 * wcDy * wcz);
|
||||
if (useAbs)
|
||||
{
|
||||
// (u_0)_{x_2} * (op * curl)_1 +
|
||||
// (u_0)_{x_1} * (op * curl)_2
|
||||
dxyz1 += (wx * c2 * wcy * wcDz) +
|
||||
(wx * c3 * wcDy * wcz);
|
||||
}
|
||||
else
|
||||
{
|
||||
// (u_0)_{x_2} * (op * curl)_1 -
|
||||
// (u_0)_{x_1} * (op * curl)_2
|
||||
dxyz1 += (wx * c2 * wcy * wcDz) -
|
||||
(wx * c3 * wcDy * wcz);
|
||||
}
|
||||
}
|
||||
|
||||
// \hat{\nabla}\times\hat{u} is [-(u_1)_{x_2}, 0, (u_1)_{x_0}]
|
||||
// -(u_1)_{x_2} * (op * curl)_0 + (u_1)_{x_0} * (op * curl)_2
|
||||
dxyz2 += (-wy * c1 * wcx * wcDz) + (wy * c3 * wDx * wcz);
|
||||
if (useAbs)
|
||||
{
|
||||
// +(u_1)_{x_2} * (op * curl)_0 +
|
||||
// (u_1)_{x_0} * (op * curl)_2
|
||||
dxyz2 += (wy * c1 * wcx * wcDz) +
|
||||
(wy * c3 * wDx * wcz);
|
||||
}
|
||||
else
|
||||
{
|
||||
// -(u_1)_{x_2} * (op * curl)_0 +
|
||||
// (u_1)_{x_0} * (op * curl)_2
|
||||
dxyz2 += (-wy * c1 * wcx * wcDz) +
|
||||
(wy * c3 * wDx * wcz);
|
||||
}
|
||||
|
||||
// \hat{\nabla}\times\hat{u} is [(u_2)_{x_1}, -(u_2)_{x_0}, 0]
|
||||
// (u_2)_{x_1} * (op * curl)_0 - (u_2)_{x_0} * (op * curl)_1
|
||||
dxyz3 += (wcDy * wz * c1 * wcx) - (wcy * wz * c2 * wDx);
|
||||
if (useAbs)
|
||||
{
|
||||
// (u_2)_{x_1} * (op * curl)_0 +
|
||||
// (u_2)_{x_0} * (op * curl)_1
|
||||
dxyz3 += (wcDy * wz * c1 * wcx) +
|
||||
(wcy * wz * c2 * wDx);
|
||||
}
|
||||
else
|
||||
{
|
||||
// (u_2)_{x_1} * (op * curl)_0 -
|
||||
// (u_2)_{x_0} * (op * curl)_1
|
||||
dxyz3 += (wcDy * wz * c1 * wcx) -
|
||||
(wcy * wz * c2 * wDx);
|
||||
}
|
||||
} // qx
|
||||
} // qy
|
||||
} // dx
|
||||
|
||||
@@ -62,7 +62,7 @@ void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
|
||||
const int NE = ne;
|
||||
const int Q1D = quad1D;
|
||||
const int NQ = pow(Q1D, dim);
|
||||
const int NQ = static_cast<int>(std::pow(Q1D, dim));
|
||||
const bool const_c = coeff.Size() == 1;
|
||||
const bool by_val = map_type == FiniteElement::VALUE;
|
||||
const auto W = Reshape(ir->GetWeights().Read(), NQ);
|
||||
@@ -199,10 +199,37 @@ void MassIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
}
|
||||
}
|
||||
|
||||
void MassIntegrator::AddAbsMultPA(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (DeviceCanUseCeed())
|
||||
{
|
||||
MFEM_ABORT("AddAbsMultPA not implemented with CEED!");
|
||||
ceedOp->AddMult(x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
Vector abs_pa_data(pa_data);
|
||||
abs_pa_data.Abs();
|
||||
Array<real_t> absB(maps->B);
|
||||
Array<real_t> absBt(maps->Bt);
|
||||
absB.Abs();
|
||||
absBt.Abs();
|
||||
|
||||
ApplyPAKernels::Run(dim, dofs1D, quad1D, ne, absB, absBt, abs_pa_data,
|
||||
x, y, dofs1D, quad1D);
|
||||
}
|
||||
}
|
||||
|
||||
void MassIntegrator::AddMultTransposePA(const Vector &x, Vector &y) const
|
||||
{
|
||||
// Mass integrator is symmetric
|
||||
AddMultPA(x, y);
|
||||
}
|
||||
|
||||
void MassIntegrator::AddAbsMultTransposePA(const Vector &x, Vector &y) const
|
||||
{
|
||||
// Mass integrator is symmetric
|
||||
AddAbsMultPA(x, y);
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -313,6 +313,129 @@ void VectorFEMassIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
}
|
||||
}
|
||||
|
||||
void VectorFEMassIntegrator::AddAbsMultPA(const Vector &x, Vector &y) const
|
||||
{
|
||||
const bool trial_curl = (trial_fetype == mfem::FiniteElement::CURL);
|
||||
const bool trial_div = (trial_fetype == mfem::FiniteElement::DIV);
|
||||
const bool test_curl = (test_fetype == mfem::FiniteElement::CURL);
|
||||
const bool test_div = (test_fetype == mfem::FiniteElement::DIV);
|
||||
|
||||
Vector abs_pa_data(pa_data);
|
||||
abs_pa_data.Abs();
|
||||
|
||||
Array<real_t> absBo(mapsO->B);
|
||||
Array<real_t> absBc(mapsC->B);
|
||||
Array<real_t> absBto(mapsO->Bt);
|
||||
Array<real_t> absBtc(mapsC->Bt);
|
||||
Array<real_t> absBto_t(mapsOtest->Bt);
|
||||
Array<real_t> absBtc_t(mapsCtest->Bt);
|
||||
|
||||
absBo.Abs();
|
||||
absBc.Abs();
|
||||
absBto.Abs();
|
||||
absBtc.Abs();
|
||||
absBto_t.Abs();
|
||||
absBtc_t.Abs();
|
||||
|
||||
if (dim == 3)
|
||||
{
|
||||
if (trial_curl && test_curl)
|
||||
{
|
||||
if (Device::Allows(Backend::DEVICE_MASK))
|
||||
{
|
||||
const int ID = (dofs1D << 4) | quad1D;
|
||||
switch (ID)
|
||||
{
|
||||
case 0x23:
|
||||
return internal::SmemPAHcurlMassApply3D<2,3>(
|
||||
dofs1D, quad1D, ne, symmetric,
|
||||
absBo, absBc, absBto, absBtc,
|
||||
abs_pa_data, x, y);
|
||||
case 0x34:
|
||||
return internal::SmemPAHcurlMassApply3D<3,4>(
|
||||
dofs1D, quad1D, ne, symmetric,
|
||||
absBo, absBc, absBto, absBtc,
|
||||
abs_pa_data, x, y);
|
||||
case 0x45:
|
||||
return internal::SmemPAHcurlMassApply3D<4,5>(
|
||||
dofs1D, quad1D, ne, symmetric,
|
||||
absBo, absBc, absBto, absBtc,
|
||||
abs_pa_data, x, y);
|
||||
case 0x56:
|
||||
return internal::SmemPAHcurlMassApply3D<5,6>(
|
||||
dofs1D, quad1D, ne, symmetric,
|
||||
absBo, absBc, absBto, absBtc,
|
||||
abs_pa_data, x, y);
|
||||
default:
|
||||
return internal::SmemPAHcurlMassApply3D(
|
||||
dofs1D, quad1D, ne, symmetric,
|
||||
absBo, absBc, absBto, absBtc,
|
||||
abs_pa_data, x, y);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
internal::PAHcurlMassApply3D(dofs1D, quad1D, ne, symmetric,
|
||||
absBo, absBc, absBto, absBtc,
|
||||
abs_pa_data, x, y);
|
||||
}
|
||||
}
|
||||
else if (trial_div && test_div)
|
||||
{
|
||||
internal::PAHdivMassApply(3, dofs1D, quad1D, ne, symmetric,
|
||||
absBo, absBc, absBto, absBtc,
|
||||
abs_pa_data, x, y);
|
||||
}
|
||||
else if (trial_curl && test_div)
|
||||
{
|
||||
const bool scalarCoeff = !(DQ || MQ);
|
||||
internal::PAHcurlHdivMassApply3D(dofs1D, dofs1Dtest, quad1D, ne,
|
||||
scalarCoeff, true, false,
|
||||
absBo, absBc, absBto_t, absBtc_t,
|
||||
abs_pa_data, x, y);
|
||||
}
|
||||
else if (trial_div && test_curl)
|
||||
{
|
||||
const bool scalarCoeff = !(DQ || MQ);
|
||||
internal::PAHcurlHdivMassApply3D(dofs1D, dofs1Dtest, quad1D, ne,
|
||||
scalarCoeff, false, false,
|
||||
absBo, absBc, absBto_t, absBtc_t,
|
||||
abs_pa_data, x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
}
|
||||
}
|
||||
else // 2D
|
||||
{
|
||||
if (trial_curl && test_curl)
|
||||
{
|
||||
internal::PAHcurlMassApply2D(dofs1D, quad1D, ne, symmetric,
|
||||
absBo, absBc, absBto, absBtc,
|
||||
abs_pa_data, x, y);
|
||||
}
|
||||
else if (trial_div && test_div)
|
||||
{
|
||||
internal::PAHdivMassApply(2, dofs1D, quad1D, ne, symmetric,
|
||||
absBo, absBc, absBto, absBtc,
|
||||
abs_pa_data, x, y);
|
||||
}
|
||||
else if ((trial_curl && test_div) || (trial_div && test_curl))
|
||||
{
|
||||
const bool scalarCoeff = !(DQ || MQ);
|
||||
internal::PAHcurlHdivMassApply2D(dofs1D, dofs1Dtest, quad1D, ne,
|
||||
scalarCoeff, trial_curl, false,
|
||||
absBo, absBc, absBto_t, absBtc_t,
|
||||
abs_pa_data, x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void VectorFEMassIntegrator::AddMultTransposePA(const Vector &x,
|
||||
Vector &y) const
|
||||
{
|
||||
|
||||
+1
-1
@@ -673,7 +673,7 @@ public:
|
||||
int myid;
|
||||
MPI_Comm_rank(comm, &myid);
|
||||
|
||||
int seed = (seed_ > 0) ? seed_ + myid : (int)time(0) + myid;
|
||||
int seed = (seed_ > 0) ? seed_ + myid : time(nullptr) + myid;
|
||||
SetSeed(seed);
|
||||
}
|
||||
#else
|
||||
|
||||
+2
-2
@@ -5259,7 +5259,7 @@ DeviceConformingProlongationOperator::DeviceConformingProlongationOperator(
|
||||
gc.GetNeighborLTDofTable(nbr_ltdof);
|
||||
const int nb_connections = nbr_ltdof.Size_of_connections();
|
||||
shr_ltdof.SetSize(nb_connections);
|
||||
shr_ltdof.CopyFrom(nbr_ltdof.GetJ());
|
||||
if (nb_connections > 0) { shr_ltdof.CopyFrom(nbr_ltdof.GetJ()); }
|
||||
shr_buf.SetSize(nb_connections);
|
||||
shr_buf.UseDevice(true);
|
||||
shr_buf_offsets = nbr_ltdof.GetIMemory();
|
||||
@@ -5288,7 +5288,7 @@ DeviceConformingProlongationOperator::DeviceConformingProlongationOperator(
|
||||
gc.GetNeighborLDofTable(nbr_ldof);
|
||||
const int nb_connections = nbr_ldof.Size_of_connections();
|
||||
ext_ldof.SetSize(nb_connections);
|
||||
ext_ldof.CopyFrom(nbr_ldof.GetJ());
|
||||
if (nb_connections > 0) { ext_ldof.CopyFrom(nbr_ldof.GetJ()); }
|
||||
ext_ldof.GetMemory().UseDevice(true);
|
||||
ext_buf.SetSize(nb_connections);
|
||||
ext_buf.UseDevice(true);
|
||||
|
||||
@@ -577,7 +577,13 @@ public:
|
||||
|
||||
void Mult(const Vector &x, Vector &y) const override;
|
||||
|
||||
void AbsMult(const Vector &x, Vector &y) const override
|
||||
{ Mult(x,y); }
|
||||
|
||||
void MultTranspose(const Vector &x, Vector &y) const override;
|
||||
|
||||
void AbsMultTranspose(const Vector &x, Vector &y) const override
|
||||
{ MultTranspose(x,y); }
|
||||
};
|
||||
|
||||
/// Auxiliary device class used by ParFiniteElementSpace.
|
||||
@@ -628,7 +634,13 @@ public:
|
||||
|
||||
void Mult(const Vector &x, Vector &y) const override;
|
||||
|
||||
void AbsMult(const Vector &x, Vector &y) const override
|
||||
{ Mult(x,y); }
|
||||
|
||||
void MultTranspose(const Vector &x, Vector &y) const override;
|
||||
|
||||
void AbsMultTranspose(const Vector &x, Vector &y) const override
|
||||
{ MultTranspose(x,y); }
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
@@ -1406,6 +1406,18 @@ real_t L2ZZErrorEstimator(BilinearFormIntegrator &flux_integrator,
|
||||
return pow(glob_error, 1.0/norm_p);
|
||||
}
|
||||
|
||||
PLBound ParGridFunction::GetBounds(Vector &lower, Vector &upper,
|
||||
const int ref_factor, const int vdim)
|
||||
{
|
||||
PLBound plb = GridFunction::GetBounds(lower, upper, ref_factor, vdim);
|
||||
int siz = vdim > 0 ? 1 : fes->GetVDim();
|
||||
MPI_Allreduce(MPI_IN_PLACE, lower.HostReadWrite(), siz,
|
||||
MFEM_MPI_REAL_T, MPI_MIN, pfes->GetComm());
|
||||
MPI_Allreduce(MPI_IN_PLACE, upper.HostReadWrite(), siz,
|
||||
MFEM_MPI_REAL_T, MPI_MAX, pfes->GetComm());
|
||||
return plb;
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
@@ -581,6 +581,14 @@ public:
|
||||
GridFunction &flux,
|
||||
bool wcoef = true, int subdomain = -1) override;
|
||||
|
||||
/// Computes the PLBound for the gridfunction with number of control
|
||||
/// points based on @a ref_factor, and returns the bounds for each
|
||||
/// vdim across all elements in @b lower and @b upper. We also return the
|
||||
/// PLBound object used to compute the bounds. Note: if vdim < 1, we compute
|
||||
/// the bounds for each vector dimension.
|
||||
PLBound GetBounds(Vector &lower, Vector &upper,
|
||||
const int ref_factor=1, const int vdim=-1) override;
|
||||
|
||||
/** Save the local portion of the ParGridFunction. This differs from the
|
||||
serial GridFunction::Save in that it takes into account the signs of
|
||||
the local dofs. */
|
||||
|
||||
+3
-280
@@ -9,278 +9,16 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../../linalg/dtensor.hpp"
|
||||
#include "../../fem/kernels.hpp"
|
||||
#include "../../linalg/kernels.hpp"
|
||||
|
||||
using namespace mfem;
|
||||
#include "det.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
static void Det1D(const int NE,
|
||||
const real_t *b,
|
||||
const real_t *g,
|
||||
const real_t *x,
|
||||
real_t *y,
|
||||
const int d1d,
|
||||
const int q1d,
|
||||
Vector *d_buff = nullptr)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(b);
|
||||
MFEM_CONTRACT_VAR(d_buff);
|
||||
const auto G = Reshape(g, q1d, d1d);
|
||||
const auto X = Reshape(x, d1d, NE);
|
||||
|
||||
auto Y = Reshape(y, q1d, NE);
|
||||
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
for (int q = 0; q < q1d; q++)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int d = 0; d < d1d; d++)
|
||||
{
|
||||
u += G(q, d) * X(d, e);
|
||||
}
|
||||
Y(q, e) = u;
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
static void Det2D(const int NE,
|
||||
const real_t *b,
|
||||
const real_t *g,
|
||||
const real_t *x,
|
||||
real_t *y,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0,
|
||||
Vector *d_buff = nullptr)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(d_buff);
|
||||
static constexpr int SDIM = 2;
|
||||
static constexpr int NBZ = 1;
|
||||
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
const auto B = Reshape(b, Q1D, D1D);
|
||||
const auto G = Reshape(g, Q1D, D1D);
|
||||
const auto X = Reshape(x, D1D, D1D, SDIM, NE);
|
||||
auto Y = Reshape(y, Q1D, Q1D, NE);
|
||||
|
||||
mfem::forall_2D_batch(NE, Q1D, Q1D, NBZ, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
MFEM_SHARED real_t BG[2][MQ1*MD1];
|
||||
MFEM_SHARED real_t XY[SDIM][NBZ][MD1*MD1];
|
||||
MFEM_SHARED real_t DQ[2*SDIM][NBZ][MD1*MQ1];
|
||||
MFEM_SHARED real_t QQ[2*SDIM][NBZ][MQ1*MQ1];
|
||||
|
||||
kernels::internal::LoadX<MD1,NBZ>(e,D1D,X,XY);
|
||||
kernels::internal::LoadBG<MD1,MQ1>(D1D,Q1D,B,G,BG);
|
||||
|
||||
kernels::internal::GradX<MD1,MQ1,NBZ>(D1D,Q1D,BG,XY,DQ);
|
||||
kernels::internal::GradY<MD1,MQ1,NBZ>(D1D,Q1D,BG,DQ,QQ);
|
||||
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t J[4];
|
||||
kernels::internal::PullGrad<MQ1,NBZ>(Q1D,qx,qy,QQ,J);
|
||||
Y(qx,qy,e) = kernels::Det<2>(J);
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
static void Det2DSurface(const int NE,
|
||||
const real_t *b,
|
||||
const real_t *g,
|
||||
const real_t *x,
|
||||
real_t *y,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0,
|
||||
Vector *d_buff = nullptr)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(d_buff);
|
||||
|
||||
static constexpr int SDIM = 3;
|
||||
static constexpr int NBZ = 1;
|
||||
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
const auto B = Reshape(b, Q1D, D1D);
|
||||
const auto G = Reshape(g, Q1D, D1D);
|
||||
const auto X = Reshape(x, D1D, D1D, SDIM, NE);
|
||||
auto Y = Reshape(y, Q1D, Q1D, NE);
|
||||
|
||||
mfem::forall_2D_batch(NE, Q1D, Q1D, NBZ, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
|
||||
MFEM_SHARED real_t BG[2][MQ1*MD1];
|
||||
MFEM_SHARED real_t XYZ[SDIM][NBZ][MD1*MD1];
|
||||
MFEM_SHARED real_t DQ[2*SDIM][NBZ][MD1*MQ1];
|
||||
|
||||
kernels::internal::LoadBG<MD1,MQ1>(D1D,Q1D,B,G,BG);
|
||||
|
||||
// Load XYZ components
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
for (int d = 0; d < SDIM; ++d)
|
||||
{
|
||||
XYZ[d][tidz][dx + dy*D1D] = X(dx,dy,d,e);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
ConstDeviceMatrix B_mat(BG[0], D1D, Q1D);
|
||||
ConstDeviceMatrix G_mat(BG[1], D1D, Q1D);
|
||||
|
||||
// x contraction
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
for (int d = 0; d < SDIM; ++d)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
real_t v = 0.0;
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
const real_t xval = XYZ[d][tidz][dx + dy*D1D];
|
||||
u += xval * G_mat(dx,qx);
|
||||
v += xval * B_mat(dx,qx);
|
||||
}
|
||||
DQ[d][tidz][dy + qx*D1D] = u;
|
||||
DQ[3 + d][tidz][dy + qx*D1D] = v;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
// y contraction and determinant computation
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t J_[6] = {0.0, 0.0, 0.0, 0.0, 0.0, 0.0};
|
||||
for (int d = 0; d < SDIM; ++d)
|
||||
{
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
J_[d] += DQ[d][tidz][dy + qx*D1D] * B_mat(dy,qy);
|
||||
J_[3 + d] += DQ[3 + d][tidz][dy + qx*D1D] * G_mat(dy,qy);
|
||||
}
|
||||
}
|
||||
DeviceTensor<2> J(J_, 3, 2);
|
||||
const real_t E = J(0,0)*J(0,0) + J(1,0)*J(1,0) + J(2,0)*J(2,0);
|
||||
const real_t F = J(0,0)*J(0,1) + J(1,0)*J(1,1) + J(2,0)*J(2,1);
|
||||
const real_t G = J(0,1)*J(0,1) + J(1,1)*J(1,1) + J(2,1)*J(2,1);
|
||||
Y(qx,qy,e) = std::sqrt(E*G - F*F);
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0, bool SMEM = true>
|
||||
static void Det3D(const int NE,
|
||||
const real_t *b,
|
||||
const real_t *g,
|
||||
const real_t *x,
|
||||
real_t *y,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0,
|
||||
Vector *d_buff = nullptr) // used only with SMEM = false
|
||||
{
|
||||
constexpr int DIM = 3;
|
||||
static constexpr int GRID = SMEM ? 0 : 128;
|
||||
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
const auto B = Reshape(b, Q1D, D1D);
|
||||
const auto G = Reshape(g, Q1D, D1D);
|
||||
const auto X = Reshape(x, D1D, D1D, D1D, DIM, NE);
|
||||
auto Y = Reshape(y, Q1D, Q1D, Q1D, NE);
|
||||
|
||||
real_t *GM = nullptr;
|
||||
if (!SMEM)
|
||||
{
|
||||
const DeviceDofQuadLimits &limits = DeviceDofQuadLimits::Get();
|
||||
const int max_q1d = T_Q1D ? T_Q1D : limits.MAX_Q1D;
|
||||
const int max_d1d = T_D1D ? T_D1D : limits.MAX_D1D;
|
||||
const int max_qd = std::max(max_q1d, max_d1d);
|
||||
const int mem_size = max_qd * max_qd * max_qd * 9;
|
||||
d_buff->SetSize(2*mem_size*GRID);
|
||||
GM = d_buff->Write();
|
||||
}
|
||||
|
||||
mfem::forall_3D_grid(NE, Q1D, Q1D, Q1D, GRID, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
static constexpr int MQ1 = T_Q1D ? T_Q1D :
|
||||
(SMEM ? DofQuadLimits::MAX_DET_1D : DofQuadLimits::MAX_Q1D);
|
||||
static constexpr int MD1 = T_D1D ? T_D1D :
|
||||
(SMEM ? DofQuadLimits::MAX_DET_1D : DofQuadLimits::MAX_D1D);
|
||||
static constexpr int MDQ = MQ1 > MD1 ? MQ1 : MD1;
|
||||
static constexpr int MSZ = MDQ * MDQ * MDQ * 9;
|
||||
|
||||
const int bid = MFEM_BLOCK_ID(x);
|
||||
MFEM_SHARED real_t BG[2][MQ1*MD1];
|
||||
MFEM_SHARED real_t SM0[SMEM?MSZ:1];
|
||||
MFEM_SHARED real_t SM1[SMEM?MSZ:1];
|
||||
real_t *lm0 = SMEM ? SM0 : GM + MSZ*bid;
|
||||
real_t *lm1 = SMEM ? SM1 : GM + MSZ*(GRID+bid);
|
||||
real_t (*DDD)[MD1*MD1*MD1] = (real_t (*)[MD1*MD1*MD1]) (lm0);
|
||||
real_t (*DDQ)[MD1*MD1*MQ1] = (real_t (*)[MD1*MD1*MQ1]) (lm1);
|
||||
real_t (*DQQ)[MD1*MQ1*MQ1] = (real_t (*)[MD1*MQ1*MQ1]) (lm0);
|
||||
real_t (*QQQ)[MQ1*MQ1*MQ1] = (real_t (*)[MQ1*MQ1*MQ1]) (lm1);
|
||||
|
||||
kernels::internal::LoadX<MD1>(e,D1D,X,DDD);
|
||||
kernels::internal::LoadBG<MD1,MQ1>(D1D,Q1D,B,G,BG);
|
||||
|
||||
kernels::internal::GradX<MD1,MQ1>(D1D,Q1D,BG,DDD,DDQ);
|
||||
kernels::internal::GradY<MD1,MQ1>(D1D,Q1D,BG,DDQ,DQQ);
|
||||
kernels::internal::GradZ<MD1,MQ1>(D1D,Q1D,BG,DQQ,QQQ);
|
||||
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t J[9];
|
||||
kernels::internal::PullGrad<MQ1>(Q1D, qx,qy,qz, QQQ, J);
|
||||
Y(qx,qy,qz,e) = kernels::Det<3>(J);
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void InitDetKernels()
|
||||
{
|
||||
using k = QuadratureInterpolator::DetKernels;
|
||||
@@ -302,27 +40,12 @@ void InitDetKernels()
|
||||
}
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
|
||||
} // namespace internal
|
||||
|
||||
/// @cond Suppress_Doxygen_warnings
|
||||
|
||||
namespace
|
||||
{
|
||||
using DetKernel = QuadratureInterpolator::DetKernelType;
|
||||
}
|
||||
|
||||
template<int DIM, int SDIM, int D1D, int Q1D>
|
||||
DetKernel QuadratureInterpolator::DetKernels::Kernel()
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::Det1D; }
|
||||
else if (DIM == 2 && SDIM == 2) { return internal::quadrature_interpolator::Det2D<D1D, Q1D>; }
|
||||
else if (DIM == 2 && SDIM == 3) { return internal::quadrature_interpolator::Det2DSurface<D1D, Q1D>; }
|
||||
else if (DIM == 3) { return internal::quadrature_interpolator::Det3D<D1D, Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
DetKernel QuadratureInterpolator::DetKernels::Fallback(
|
||||
QuadratureInterpolator::DetKernelType
|
||||
QuadratureInterpolator::DetKernels::Fallback(
|
||||
int DIM, int SDIM, int D1D, int Q1D)
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::Det1D; }
|
||||
|
||||
@@ -0,0 +1,304 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_QUADINTERP_DET_HPP
|
||||
#define MFEM_QUADINTERP_DET_HPP
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../../linalg/dtensor.hpp"
|
||||
#include "../../fem/kernels.hpp"
|
||||
#include "../../linalg/kernels.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace internal
|
||||
{
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
inline void Det1D(const int NE,
|
||||
const real_t *b,
|
||||
const real_t *g,
|
||||
const real_t *x,
|
||||
real_t *y,
|
||||
const int d1d,
|
||||
const int q1d,
|
||||
Vector *d_buff = nullptr)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(b);
|
||||
MFEM_CONTRACT_VAR(d_buff);
|
||||
const auto G = Reshape(g, q1d, d1d);
|
||||
const auto X = Reshape(x, d1d, NE);
|
||||
|
||||
auto Y = Reshape(y, q1d, NE);
|
||||
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
for (int q = 0; q < q1d; q++)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int d = 0; d < d1d; d++)
|
||||
{
|
||||
u += G(q, d) * X(d, e);
|
||||
}
|
||||
Y(q, e) = u;
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void Det2D(const int NE,
|
||||
const real_t *b,
|
||||
const real_t *g,
|
||||
const real_t *x,
|
||||
real_t *y,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0,
|
||||
Vector *d_buff = nullptr)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(d_buff);
|
||||
static constexpr int SDIM = 2;
|
||||
static constexpr int NBZ = 1;
|
||||
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
const auto B = Reshape(b, Q1D, D1D);
|
||||
const auto G = Reshape(g, Q1D, D1D);
|
||||
const auto X = Reshape(x, D1D, D1D, SDIM, NE);
|
||||
auto Y = Reshape(y, Q1D, Q1D, NE);
|
||||
|
||||
mfem::forall_2D_batch(NE, Q1D, Q1D, NBZ, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
MFEM_SHARED real_t BG[2][MQ1*MD1];
|
||||
MFEM_SHARED real_t XY[SDIM][NBZ][MD1*MD1];
|
||||
MFEM_SHARED real_t DQ[2*SDIM][NBZ][MD1*MQ1];
|
||||
MFEM_SHARED real_t QQ[2*SDIM][NBZ][MQ1*MQ1];
|
||||
|
||||
kernels::internal::LoadX<MD1,NBZ>(e,D1D,X,XY);
|
||||
kernels::internal::LoadBG<MD1,MQ1>(D1D,Q1D,B,G,BG);
|
||||
|
||||
kernels::internal::GradX<MD1,MQ1,NBZ>(D1D,Q1D,BG,XY,DQ);
|
||||
kernels::internal::GradY<MD1,MQ1,NBZ>(D1D,Q1D,BG,DQ,QQ);
|
||||
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t J[4];
|
||||
kernels::internal::PullGrad<MQ1,NBZ>(Q1D,qx,qy,QQ,J);
|
||||
Y(qx,qy,e) = kernels::Det<2>(J);
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
inline void Det2DSurface(const int NE,
|
||||
const real_t *b,
|
||||
const real_t *g,
|
||||
const real_t *x,
|
||||
real_t *y,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0,
|
||||
Vector *d_buff = nullptr)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(d_buff);
|
||||
|
||||
static constexpr int SDIM = 3;
|
||||
static constexpr int NBZ = 1;
|
||||
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
const auto B = Reshape(b, Q1D, D1D);
|
||||
const auto G = Reshape(g, Q1D, D1D);
|
||||
const auto X = Reshape(x, D1D, D1D, SDIM, NE);
|
||||
auto Y = Reshape(y, Q1D, Q1D, NE);
|
||||
|
||||
mfem::forall_2D_batch(NE, Q1D, Q1D, NBZ, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
|
||||
MFEM_SHARED real_t BG[2][MQ1*MD1];
|
||||
MFEM_SHARED real_t XYZ[SDIM][NBZ][MD1*MD1];
|
||||
MFEM_SHARED real_t DQ[2*SDIM][NBZ][MD1*MQ1];
|
||||
|
||||
kernels::internal::LoadBG<MD1,MQ1>(D1D,Q1D,B,G,BG);
|
||||
|
||||
// Load XYZ components
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
for (int d = 0; d < SDIM; ++d)
|
||||
{
|
||||
XYZ[d][tidz][dx + dy*D1D] = X(dx,dy,d,e);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
ConstDeviceMatrix B_mat(BG[0], D1D, Q1D);
|
||||
ConstDeviceMatrix G_mat(BG[1], D1D, Q1D);
|
||||
|
||||
// x contraction
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
for (int d = 0; d < SDIM; ++d)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
real_t v = 0.0;
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
const real_t xval = XYZ[d][tidz][dx + dy*D1D];
|
||||
u += xval * G_mat(dx,qx);
|
||||
v += xval * B_mat(dx,qx);
|
||||
}
|
||||
DQ[d][tidz][dy + qx*D1D] = u;
|
||||
DQ[3 + d][tidz][dy + qx*D1D] = v;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
// y contraction and determinant computation
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t J_[6] = {0.0, 0.0, 0.0, 0.0, 0.0, 0.0};
|
||||
for (int d = 0; d < SDIM; ++d)
|
||||
{
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
J_[d] += DQ[d][tidz][dy + qx*D1D] * B_mat(dy,qy);
|
||||
J_[3 + d] += DQ[3 + d][tidz][dy + qx*D1D] * G_mat(dy,qy);
|
||||
}
|
||||
}
|
||||
DeviceTensor<2> J(J_, 3, 2);
|
||||
const real_t E = J(0,0)*J(0,0) + J(1,0)*J(1,0) + J(2,0)*J(2,0);
|
||||
const real_t F = J(0,0)*J(0,1) + J(1,0)*J(1,1) + J(2,0)*J(2,1);
|
||||
const real_t G = J(0,1)*J(0,1) + J(1,1)*J(1,1) + J(2,1)*J(2,1);
|
||||
Y(qx,qy,e) = std::sqrt(E*G - F*F);
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0, bool SMEM = true>
|
||||
inline void Det3D(const int NE,
|
||||
const real_t *b,
|
||||
const real_t *g,
|
||||
const real_t *x,
|
||||
real_t *y,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0,
|
||||
Vector *d_buff = nullptr) // used only with SMEM = false
|
||||
{
|
||||
constexpr int DIM = 3;
|
||||
static constexpr int GRID = SMEM ? 0 : 128;
|
||||
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
const auto B = Reshape(b, Q1D, D1D);
|
||||
const auto G = Reshape(g, Q1D, D1D);
|
||||
const auto X = Reshape(x, D1D, D1D, D1D, DIM, NE);
|
||||
auto Y = Reshape(y, Q1D, Q1D, Q1D, NE);
|
||||
|
||||
real_t *GM = nullptr;
|
||||
if (!SMEM)
|
||||
{
|
||||
const DeviceDofQuadLimits &limits = DeviceDofQuadLimits::Get();
|
||||
const int max_q1d = T_Q1D ? T_Q1D : limits.MAX_Q1D;
|
||||
const int max_d1d = T_D1D ? T_D1D : limits.MAX_D1D;
|
||||
const int max_qd = std::max(max_q1d, max_d1d);
|
||||
const int mem_size = max_qd * max_qd * max_qd * 9;
|
||||
d_buff->SetSize(2*mem_size*GRID);
|
||||
GM = d_buff->Write();
|
||||
}
|
||||
|
||||
mfem::forall_3D_grid(NE, Q1D, Q1D, Q1D, GRID, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
static constexpr int MQ1 = T_Q1D ? T_Q1D :
|
||||
(SMEM ? DofQuadLimits::MAX_DET_1D : DofQuadLimits::MAX_Q1D);
|
||||
static constexpr int MD1 = T_D1D ? T_D1D :
|
||||
(SMEM ? DofQuadLimits::MAX_DET_1D : DofQuadLimits::MAX_D1D);
|
||||
static constexpr int MDQ = MQ1 > MD1 ? MQ1 : MD1;
|
||||
static constexpr int MSZ = MDQ * MDQ * MDQ * 9;
|
||||
|
||||
const int bid = MFEM_BLOCK_ID(x);
|
||||
MFEM_SHARED real_t BG[2][MQ1*MD1];
|
||||
MFEM_SHARED real_t SM0[SMEM?MSZ:1];
|
||||
MFEM_SHARED real_t SM1[SMEM?MSZ:1];
|
||||
real_t *lm0 = SMEM ? SM0 : GM + MSZ*bid;
|
||||
real_t *lm1 = SMEM ? SM1 : GM + MSZ*(GRID+bid);
|
||||
real_t (*DDD)[MD1*MD1*MD1] = (real_t (*)[MD1*MD1*MD1]) (lm0);
|
||||
real_t (*DDQ)[MD1*MD1*MQ1] = (real_t (*)[MD1*MD1*MQ1]) (lm1);
|
||||
real_t (*DQQ)[MD1*MQ1*MQ1] = (real_t (*)[MD1*MQ1*MQ1]) (lm0);
|
||||
real_t (*QQQ)[MQ1*MQ1*MQ1] = (real_t (*)[MQ1*MQ1*MQ1]) (lm1);
|
||||
|
||||
kernels::internal::LoadX<MD1>(e,D1D,X,DDD);
|
||||
kernels::internal::LoadBG<MD1,MQ1>(D1D,Q1D,B,G,BG);
|
||||
|
||||
kernels::internal::GradX<MD1,MQ1>(D1D,Q1D,BG,DDD,DDQ);
|
||||
kernels::internal::GradY<MD1,MQ1>(D1D,Q1D,BG,DDQ,DQQ);
|
||||
kernels::internal::GradZ<MD1,MQ1>(D1D,Q1D,BG,DQQ,QQQ);
|
||||
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t J[9];
|
||||
kernels::internal::PullGrad<MQ1>(Q1D, qx,qy,qz, QQQ, J);
|
||||
Y(qx,qy,qz,e) = kernels::Det<3>(J);
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
} // namespace internal
|
||||
|
||||
/// @cond Suppress_Doxygen_warnings
|
||||
|
||||
template<int DIM, int SDIM, int D1D, int Q1D>
|
||||
QuadratureInterpolator::DetKernelType
|
||||
QuadratureInterpolator::DetKernels::Kernel()
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::Det1D; }
|
||||
else if (DIM == 2 && SDIM == 2) { return internal::quadrature_interpolator::Det2D<D1D, Q1D>; }
|
||||
else if (DIM == 2 && SDIM == 3) { return internal::quadrature_interpolator::Det2DSurface<D1D, Q1D>; }
|
||||
else if (DIM == 3) { return internal::quadrature_interpolator::Det3D<D1D, Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
/// @endcond
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_QUADINTERP_DET_HPP
|
||||
@@ -566,8 +566,8 @@ void QuadratureInterpolator::Mult(const Vector &e_vec,
|
||||
}
|
||||
else // use_tensor_eval == false
|
||||
{
|
||||
EvalKernels::Run(dim, vdim, maps.ndof, maps.nqpt, ne,vdim,q_layout,
|
||||
geom, maps,e_vec, q_val,q_der,q_det,eval_flags);
|
||||
EvalKernels::Run(dim, vdim, maps.ndof, maps.nqpt, ne,vdim, q_layout,
|
||||
geom, maps, e_vec, q_val, q_der, q_det, eval_flags);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
+6
-5
@@ -128,7 +128,7 @@ void ElementRestriction::Mult(const Vector& x, Vector& y) const
|
||||
});
|
||||
}
|
||||
|
||||
void ElementRestriction::MultUnsigned(const Vector& x, Vector& y) const
|
||||
void ElementRestriction::AbsMult(const Vector& x, Vector& y) const
|
||||
{
|
||||
// Assumes all elements have the same number of dofs
|
||||
const int nd = dof;
|
||||
@@ -193,7 +193,7 @@ void ElementRestriction::AddMultTranspose(const Vector& x, Vector& y,
|
||||
TAddMultTranspose<ADD>(x, y);
|
||||
}
|
||||
|
||||
void ElementRestriction::MultTransposeUnsigned(const Vector& x, Vector& y) const
|
||||
void ElementRestriction::AbsMultTranspose(const Vector& x, Vector& y) const
|
||||
{
|
||||
// Assumes all elements have the same number of dofs
|
||||
const int nd = dof;
|
||||
@@ -653,7 +653,8 @@ ConformingFaceRestriction::ConformingFaceRestriction(
|
||||
: ConformingFaceRestriction(fes, f_ordering, type, true)
|
||||
{ }
|
||||
|
||||
void ConformingFaceRestriction::Mult(const Vector& x, Vector& y) const
|
||||
void ConformingFaceRestriction::MultInternal(const Vector& x, Vector& y,
|
||||
const bool useAbs) const
|
||||
{
|
||||
if (nf==0) { return; }
|
||||
// Assumes all elements have the same number of dofs
|
||||
@@ -666,7 +667,7 @@ void ConformingFaceRestriction::Mult(const Vector& x, Vector& y) const
|
||||
mfem::forall(nfdofs, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
const int s_idx = d_indices[i];
|
||||
const int sgn = (s_idx >= 0) ? 1 : -1;
|
||||
const int sgn = (useAbs || s_idx >= 0) ? 1 : -1;
|
||||
const int idx = (s_idx >= 0) ? s_idx : -1 - s_idx;
|
||||
const int dof = i % nface_dofs;
|
||||
const int face = i / nface_dofs;
|
||||
@@ -724,7 +725,7 @@ void ConformingFaceRestriction::AddMultTranspose(
|
||||
true, a);
|
||||
}
|
||||
|
||||
void ConformingFaceRestriction::AddMultTransposeUnsigned(
|
||||
void ConformingFaceRestriction::AddAbsMultTranspose(
|
||||
const Vector& x, Vector& y, const real_t a) const
|
||||
{
|
||||
ConformingFaceRestriction_AddMultTranspose(
|
||||
|
||||
+55
-7
@@ -59,9 +59,18 @@ public:
|
||||
const real_t a = 1.0) const override;
|
||||
|
||||
/// Compute Mult without applying signs based on DOF orientations.
|
||||
void MultUnsigned(const Vector &x, Vector &y) const;
|
||||
void AbsMult(const Vector &x, Vector &y) const override;
|
||||
|
||||
/// Compute MultTranspose without applying signs based on DOF orientations.
|
||||
void MultTransposeUnsigned(const Vector &x, Vector &y) const;
|
||||
void AbsMultTranspose(const Vector &x, Vector &y) const override;
|
||||
|
||||
/// @deprecated Use AbsMult() instead.
|
||||
MFEM_DEPRECATED void MultUnsigned(const Vector &x, Vector &y) const
|
||||
{ AbsMult(x, y); }
|
||||
|
||||
/// @deprecated Use AbsMultTranspose() instead.
|
||||
MFEM_DEPRECATED void MultTransposeUnsigned(const Vector &x, Vector &y) const
|
||||
{ AbsMultTranspose(x, y); }
|
||||
|
||||
/// Compute MultTranspose by setting (rather than adding) element
|
||||
/// contributions; this is a left inverse of the Mult() operation
|
||||
@@ -184,12 +193,19 @@ public:
|
||||
|
||||
/** @brief Add the face degrees of freedom @a x to the element degrees of
|
||||
freedom @a y ignoring the signs from DOF orientation. */
|
||||
virtual void AddMultTransposeUnsigned(const Vector &x, Vector &y,
|
||||
const real_t a = 1.0) const
|
||||
virtual void AddAbsMultTranspose(const Vector &x, Vector &y,
|
||||
const real_t a = 1.0) const
|
||||
{
|
||||
AddMultTranspose(x, y, a);
|
||||
}
|
||||
|
||||
/// @deprecated Use AddAbsMultTranspose() instead.
|
||||
MFEM_DEPRECATED void AddMultTransposeUnsigned(const Vector &x, Vector &y,
|
||||
const real_t a = 1.0) const
|
||||
{
|
||||
AddAbsMultTranspose(x, y, a);
|
||||
}
|
||||
|
||||
/** @brief Add the face degrees of freedom @a x to the element degrees of
|
||||
freedom @a y. Perform the same computation as AddMultTranspose, but
|
||||
@a x is invalid after calling this method.
|
||||
@@ -219,6 +235,12 @@ public:
|
||||
AddMultTranspose(x, y);
|
||||
}
|
||||
|
||||
void AbsMultTranspose(const Vector &x, Vector &y) const override
|
||||
{
|
||||
y = 0.0;
|
||||
AddAbsMultTranspose(x, y);
|
||||
}
|
||||
|
||||
/** @brief For each face, sets @a y to the partial derivative of @a x with
|
||||
respect to the reference coordinate whose direction is
|
||||
perpendicular to the face on the reference element.
|
||||
@@ -319,7 +341,16 @@ public:
|
||||
requested by @a type in the constructor.
|
||||
The face_dofs are ordered according to the given
|
||||
ElementDofOrdering. */
|
||||
void Mult(const Vector &x, Vector &y) const override;
|
||||
void Mult(const Vector &x, Vector &y) const override
|
||||
{ MultInternal(x, y); }
|
||||
|
||||
/// Compute Mult without applying signs based on DOF orientations.
|
||||
void AbsMult(const Vector &x, Vector &y) const override
|
||||
{ MultInternal(x, y, true); }
|
||||
|
||||
/// @deprecated Use AbsMult() instead.
|
||||
MFEM_DEPRECATED void MultUnsigned(const Vector &x, Vector &y) const
|
||||
{ AbsMult(x, y); }
|
||||
|
||||
using FaceRestriction::AddMultTransposeInPlace;
|
||||
|
||||
@@ -341,8 +372,20 @@ public:
|
||||
L-Vector @b not taking into account signs from DOF orientations.
|
||||
|
||||
@sa AddMultTranspose(). */
|
||||
void AddMultTransposeUnsigned(const Vector &x, Vector &y,
|
||||
const real_t a = 1.0) const override;
|
||||
void AddAbsMultTranspose(const Vector &x, Vector &y,
|
||||
const real_t a = 1.0) const override;
|
||||
|
||||
/// @deprecated Use AddAbsMultTranspose() instead.
|
||||
MFEM_DEPRECATED void AddMultTransposeUnsigned(const Vector &x, Vector &y) const
|
||||
{
|
||||
AddAbsMultTranspose(x, y);
|
||||
}
|
||||
|
||||
void AbsMultTranspose(const Vector &x, Vector &y) const override
|
||||
{
|
||||
y = 0.0;
|
||||
AddAbsMultTranspose(x, y);
|
||||
}
|
||||
|
||||
private:
|
||||
/** @brief Compute the scatter indices: L-vector to E-vector, and the offsets
|
||||
@@ -395,6 +438,11 @@ protected:
|
||||
void SetFaceDofsGatherIndices(const Mesh::FaceInformation &face,
|
||||
const int face_index,
|
||||
const ElementDofOrdering f_ordering);
|
||||
|
||||
public:
|
||||
// This method needs to be public due to 'nvcc' restriction.
|
||||
void MultInternal(const Vector &x, Vector &y,
|
||||
const bool useAbs = false) const;
|
||||
};
|
||||
|
||||
/// @brief Alias for ConformingFaceRestriction, for backwards compatibility and
|
||||
|
||||
+9
-27
@@ -5122,33 +5122,32 @@ real_t TMOP_Integrator::GetSurfaceFittingWeight()
|
||||
|
||||
void TMOP_Integrator::EnableNormalization(const GridFunction &x)
|
||||
{
|
||||
ComputeNormalizationEnergies(x, metric_normal, lim_normal, surf_fit_normal);
|
||||
ComputeNormalizationEnergies(x, metric_normal, lim_normal);
|
||||
metric_normal = 1.0 / metric_normal;
|
||||
lim_normal = 1.0 / lim_normal;
|
||||
//if (surf_fit_gf) { surf_fit_normal = 1.0 / surf_fit_normal; }
|
||||
if (surf_fit_gf || surf_fit_pos) { surf_fit_normal = lim_normal; }
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
void TMOP_Integrator::ParEnableNormalization(const ParGridFunction &x)
|
||||
{
|
||||
real_t loc[3];
|
||||
ComputeNormalizationEnergies(x, loc[0], loc[1], loc[2]);
|
||||
real_t rdc[3];
|
||||
MPI_Allreduce(loc, rdc, 3, MPITypeMap<real_t>::mpi_type, MPI_SUM,
|
||||
real_t loc[2];
|
||||
ComputeNormalizationEnergies(x, loc[0], loc[1]);
|
||||
real_t rdc[2];
|
||||
MPI_Allreduce(loc, rdc, 2, MPITypeMap<real_t>::mpi_type, MPI_SUM,
|
||||
x.ParFESpace()->GetComm());
|
||||
metric_normal = 1.0 / rdc[0];
|
||||
lim_normal = 1.0 / rdc[1];
|
||||
// if (surf_fit_gf) { surf_fit_normal = 1.0 / rdc[2]; }
|
||||
if (surf_fit_gf || surf_fit_pos) { surf_fit_normal = lim_normal; }
|
||||
}
|
||||
#endif
|
||||
|
||||
void TMOP_Integrator::ComputeNormalizationEnergies(const GridFunction &x,
|
||||
real_t &metric_energy,
|
||||
real_t &lim_energy,
|
||||
real_t &surf_fit_gf_energy)
|
||||
real_t &lim_energy)
|
||||
{
|
||||
metric_energy = 0.0;
|
||||
lim_energy = 0.0;
|
||||
if (PA.enabled)
|
||||
{
|
||||
MFEM_VERIFY(PA.E.Size() > 0, "Must be called after AssemblePA!");
|
||||
@@ -5191,9 +5190,6 @@ void TMOP_Integrator::ComputeNormalizationEnergies(const GridFunction &x,
|
||||
Jpr.SetSize(dim);
|
||||
Jpt.SetSize(dim);
|
||||
|
||||
metric_energy = 0.0;
|
||||
lim_energy = 0.0;
|
||||
surf_fit_gf_energy = 0.0;
|
||||
for (int i = 0; i < fes->GetNE(); i++)
|
||||
{
|
||||
const FiniteElement *fe = fes->GetFE(i);
|
||||
@@ -5225,21 +5221,7 @@ void TMOP_Integrator::ComputeNormalizationEnergies(const GridFunction &x,
|
||||
lim_energy += weight;
|
||||
}
|
||||
|
||||
// Normalization of the surface fitting term.
|
||||
if (surf_fit_gf)
|
||||
{
|
||||
Array<int> dofs;
|
||||
Vector sigma_e;
|
||||
surf_fit_gf->FESpace()->GetElementDofs(i, dofs);
|
||||
surf_fit_gf->GetSubVector(dofs, sigma_e);
|
||||
for (int s = 0; s < dofs.Size(); s++)
|
||||
{
|
||||
if ((*surf_fit_marker)[dofs[s]] == true)
|
||||
{
|
||||
surf_fit_gf_energy += sigma_e(s) * sigma_e(s);
|
||||
}
|
||||
}
|
||||
}
|
||||
// TODO: Normalization of the surface fitting term.
|
||||
}
|
||||
|
||||
// Cases when integration is not over the target element, or when the
|
||||
|
||||
+1
-2
@@ -2038,8 +2038,7 @@ protected:
|
||||
} PA;
|
||||
|
||||
void ComputeNormalizationEnergies(const GridFunction &x,
|
||||
real_t &metric_energy, real_t &lim_energy,
|
||||
real_t &surf_fit_gf_energy);
|
||||
real_t &metric_energy, real_t &lim_energy);
|
||||
|
||||
void AssembleElementVectorExact(const FiniteElement &el,
|
||||
ElementTransformation &T,
|
||||
|
||||
@@ -39,6 +39,7 @@ list(APPEND HDRS
|
||||
arrays_by_name.hpp
|
||||
backends.hpp
|
||||
binaryio.hpp
|
||||
complex_type.hpp
|
||||
cuda.hpp
|
||||
device.hpp
|
||||
error.hpp
|
||||
|
||||
@@ -15,6 +15,7 @@
|
||||
#include "array.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include <fstream>
|
||||
#include <type_traits>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -110,6 +111,19 @@ void Array<T>::PartialSum()
|
||||
}
|
||||
}
|
||||
|
||||
template <class T>
|
||||
void Array<T>::Abs()
|
||||
{
|
||||
static_assert(std::is_arithmetic<T>::value, "Use with arithmetic types!");
|
||||
const bool useDevice = UseDevice();
|
||||
const int N = size;
|
||||
auto y = ReadWrite(useDevice);
|
||||
mfem::forall_switch(useDevice, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
y[i] = std::abs(y[i]);
|
||||
});
|
||||
}
|
||||
|
||||
// Sum
|
||||
template <class T>
|
||||
T Array<T>::Sum() const
|
||||
|
||||
+8
-1
@@ -305,6 +305,9 @@ public:
|
||||
/// Fill the entries of the array with the cumulative sum of the entries.
|
||||
void PartialSum();
|
||||
|
||||
/// Replace each entry of the array with its absolute value.
|
||||
void Abs();
|
||||
|
||||
/// Return the sum of all the array entries using the '+'' operator for class 'T'.
|
||||
T Sum() const;
|
||||
|
||||
@@ -323,7 +326,11 @@ public:
|
||||
the Size to match this Capacity after this.*/
|
||||
template <typename U>
|
||||
inline void CopyFrom(const U *src)
|
||||
{ std::memcpy(begin(), src, MemoryUsage()); }
|
||||
{
|
||||
if (!begin() || size == 0) { return; }
|
||||
MFEM_ASSERT(begin() && src, "Error in Array::CopyFrom");
|
||||
std::memcpy(begin(), src, MemoryUsage());
|
||||
}
|
||||
|
||||
/// STL-like begin. Returns pointer to the first element of the array.
|
||||
inline T* begin() { return data; }
|
||||
|
||||
@@ -62,6 +62,7 @@
|
||||
#define MFEM_THREAD_ID(k) 0
|
||||
#define MFEM_THREAD_SIZE(k) 1
|
||||
#define MFEM_FOREACH_THREAD(i,k,N) for(int i=0; i<N; i++)
|
||||
#define MFEM_FOREACH_THREAD_DIRECT(i,k,N) MFEM_FOREACH_THREAD(i,k,N)
|
||||
#endif
|
||||
|
||||
// 'double' and 'float' atomicAdd implementation for previous versions of CUDA
|
||||
|
||||
@@ -0,0 +1,125 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_COMPLEX_TYPE
|
||||
#define MFEM_COMPLEX_TYPE
|
||||
|
||||
#include "../config/config.hpp"
|
||||
|
||||
#if !(defined(MFEM_USE_CUDA) || defined(MFEM_USE_HIP))
|
||||
#include <complex>
|
||||
#include <utility>
|
||||
#endif
|
||||
|
||||
#if defined(MFEM_USE_CUDA)
|
||||
#include <cuComplex.h>
|
||||
#endif
|
||||
|
||||
#if defined(MFEM_USE_HIP)
|
||||
#include <hip/hip_complex.h>
|
||||
#endif
|
||||
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// @brief Complex number type for device.
|
||||
#if !(defined(MFEM_USE_CUDA) || defined(MFEM_USE_HIP))
|
||||
|
||||
#define zAbs std::abs
|
||||
#define zExp std::exp
|
||||
#define zNorm std::norm
|
||||
using complex_t = std::complex<real_t>;
|
||||
|
||||
#else // CUDA or HIP
|
||||
|
||||
#if defined(MFEM_USE_CUDA)
|
||||
using DoubleComplex_t = cuDoubleComplex;
|
||||
#endif
|
||||
|
||||
#if defined(MFEM_USE_HIP)
|
||||
using DoubleComplex_t = hipDoubleComplex;
|
||||
#endif
|
||||
|
||||
struct Complex : public DoubleComplex_t
|
||||
{
|
||||
MFEM_HOST_DEVICE Complex() = default;
|
||||
MFEM_HOST_DEVICE Complex(real_t r) { x = r, y = 0.0; }
|
||||
MFEM_HOST_DEVICE Complex(real_t r, real_t i) { x = r, y = i; }
|
||||
MFEM_HOST_DEVICE real_t real() const { return x; }
|
||||
MFEM_HOST_DEVICE void real(real_t r) { x = r; }
|
||||
MFEM_HOST_DEVICE real_t imag() const { return y; }
|
||||
MFEM_HOST_DEVICE void imag(real_t i) { y = i; }
|
||||
|
||||
template <typename U>
|
||||
MFEM_HOST_DEVICE inline Complex &operator*=(const U &z)
|
||||
{
|
||||
return *this = *this * z, *this;
|
||||
}
|
||||
|
||||
template <typename U>
|
||||
MFEM_HOST_DEVICE inline Complex &operator/=(const U &z)
|
||||
{
|
||||
return *this = *this / z, *this;
|
||||
}
|
||||
};
|
||||
|
||||
MFEM_HOST_DEVICE inline Complex operator*(const Complex &x, const real_t &y)
|
||||
{
|
||||
return Complex(x.real() * y, x.imag() * y);
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE inline Complex operator+(const Complex &a, const Complex &b)
|
||||
{
|
||||
return Complex(a.real() + b.real(), a.imag() + b.imag());
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE inline Complex operator*(const real_t d, const Complex &z)
|
||||
{
|
||||
return Complex(z.real() * d, z.imag() * d);
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE inline Complex operator*(const Complex &a, const Complex &b)
|
||||
{
|
||||
return Complex(a.real() * b.real() - a.imag() * b.imag(),
|
||||
a.real() * b.imag() + a.imag() * b.real());
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE inline Complex operator/(const Complex &z, const real_t &d)
|
||||
{
|
||||
return Complex(z.real() / d, z.imag() / d);
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE inline real_t zAbs(const Complex &z)
|
||||
{
|
||||
return std::hypot(z.real(), z.imag());
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE inline Complex zExp(const Complex &q)
|
||||
{
|
||||
Complex z;
|
||||
real_t s, c, e = std::exp(q.real());
|
||||
sincos(q.imag(), &s, &c);
|
||||
z.real(c * e), z.imag(s * e);
|
||||
return z;
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE inline real_t zNorm(const Complex &z)
|
||||
{
|
||||
return z.real() * z.real() + z.imag() * z.imag();
|
||||
}
|
||||
|
||||
using complex_t = Complex;
|
||||
#endif // MFEM_USE_CUDA || MFEM_USE_HIP
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_COMPLEX_TYPE
|
||||
@@ -47,6 +47,7 @@
|
||||
#define MFEM_THREAD_ID(k) threadIdx.k
|
||||
#define MFEM_THREAD_SIZE(k) blockDim.k
|
||||
#define MFEM_FOREACH_THREAD(i,k,N) for(int i=threadIdx.k; i<N; i+=blockDim.k)
|
||||
#define MFEM_FOREACH_THREAD_DIRECT(i,k,N) if(const int i=threadIdx.k; i<N)
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
|
||||
@@ -16,6 +16,7 @@
|
||||
#include "../fem/ceed/interface/util.hpp"
|
||||
#endif
|
||||
#ifdef MFEM_USE_MPI
|
||||
#include "communication.hpp"
|
||||
#include "../linalg/hypre.hpp"
|
||||
#endif
|
||||
|
||||
@@ -145,6 +146,11 @@ Device::Device()
|
||||
Configure(device);
|
||||
device_env = true;
|
||||
}
|
||||
|
||||
if (GetEnv("MFEM_GPU_AWARE_MPI"))
|
||||
{
|
||||
SetGPUAwareMPI(true);
|
||||
}
|
||||
}
|
||||
|
||||
Device::~Device()
|
||||
@@ -196,6 +202,29 @@ void Device::Configure(const std::string &device, const int device_id)
|
||||
{
|
||||
bmap[internal::backend_name[i]] = internal::backend_list[i];
|
||||
}
|
||||
// auto-detect GPU configurations
|
||||
// assumes only one of HIP or CUDA are available
|
||||
#ifdef MFEM_USE_HIP
|
||||
bmap["gpu"] = Backend::HIP;
|
||||
#ifdef MFEM_USE_RAJA
|
||||
bmap["raja-gpu"] = Backend::RAJA_HIP;
|
||||
#endif
|
||||
#ifdef MFEM_USE_CEED
|
||||
bmap["ceed-gpu"] = Backend::CEED_HIP;
|
||||
#endif
|
||||
// no OCCA+HIP?
|
||||
#elif defined(MFEM_USE_CUDA)
|
||||
bmap["gpu"] = Backend::CUDA;
|
||||
#ifdef MFEM_USE_RAJA
|
||||
bmap["raja-gpu"] = Backend::RAJA_CUDA;
|
||||
#endif
|
||||
#ifdef MFEM_USE_CEED
|
||||
bmap["ceed-gpu"] = Backend::CEED_CUDA;
|
||||
#endif
|
||||
#ifdef MFEM_USE_OCCA
|
||||
bmap["occa-gpu"] = Backend::OCCA_CUDA;
|
||||
#endif
|
||||
#endif
|
||||
std::string device_option;
|
||||
std::string::size_type beg = 0, end;
|
||||
while (1)
|
||||
@@ -313,6 +342,13 @@ void Device::Print(std::ostream &os)
|
||||
{
|
||||
os << ',' << MemoryTypeName[static_cast<int>(device_mem_type)];
|
||||
}
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (Allows(Backend::DEVICE_MASK) &&
|
||||
Mpi::IsInitialized() && !Mpi::IsFinalized())
|
||||
{
|
||||
os << "\nUse GPU-aware MPI: " << (GetGPUAwareMPI() ? "yes" : "no");
|
||||
}
|
||||
#endif
|
||||
os << std::endl;
|
||||
}
|
||||
|
||||
|
||||
@@ -198,6 +198,10 @@ public:
|
||||
'ceed-hip', 'hip', 'debug',
|
||||
'occa-omp', 'raja-omp', 'omp',
|
||||
'ceed-cpu', 'occa-cpu', 'raja-cpu', 'cpu'.
|
||||
- The following backend aliases are also available: 'ceed-gpu',
|
||||
'occa-gpu', 'raja-gpu', and 'gpu' where they alias their respective
|
||||
'*-cuda' or '*-hip' backends depending on the MFEM build-time
|
||||
configuration.
|
||||
- Multiple backends can be configured at the same time.
|
||||
- Only one 'occa-*' backend can be configured at a time.
|
||||
- The backend 'occa-cuda' enables the 'cuda' backend unless 'raja-cuda'
|
||||
|
||||
@@ -23,9 +23,6 @@
|
||||
#include <_hypre_utilities.h>
|
||||
#endif
|
||||
|
||||
#include "array.hpp"
|
||||
#include "reducers.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
@@ -853,159 +850,6 @@ inline MemoryClass GetHypreForallMemoryClass()
|
||||
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
namespace internal
|
||||
{
|
||||
/**
|
||||
@brief Device portion of a reduction over a 1D sequence [0, N)
|
||||
@tparam B Reduction body. Must be callable with the signature void(int i, value_type&
|
||||
v), where i is the index to evaluate and v is the value to update.
|
||||
@tparam R Reducer capable of combining values of type value_type. See reducers.hpp for
|
||||
pre-defined reducers.
|
||||
*/
|
||||
template<class B, class R> struct reduction_kernel
|
||||
{
|
||||
/// value type body and reducer operate on.
|
||||
using value_type = typename R::value_type;
|
||||
/// workspace for the intermediate reduction results
|
||||
mutable value_type *work;
|
||||
B body;
|
||||
R reducer;
|
||||
/// Length of sequence to reduce over.
|
||||
int N;
|
||||
/// How many items is each thread responsible for during the serial phase
|
||||
int items_per_thread;
|
||||
|
||||
constexpr static MFEM_HOST_DEVICE int max_blocksize() { return 256; }
|
||||
|
||||
/// helper for computing the reduction block size
|
||||
static int block_log2(unsigned N)
|
||||
{
|
||||
#if defined(__GNUC__) || defined(__clang__)
|
||||
return N ? (sizeof(unsigned) * 8 - __builtin_clz(N)) : 0;
|
||||
#elif defined(_MSC_VER)
|
||||
return sizeof(unsigned) * 8 - __lzclz(N);
|
||||
#else
|
||||
int res = 0;
|
||||
while (N)
|
||||
{
|
||||
N >>= 1;
|
||||
++res;
|
||||
}
|
||||
return res;
|
||||
#endif
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE void operator()(int work_idx) const
|
||||
{
|
||||
MFEM_SHARED value_type buffer[max_blocksize()];
|
||||
reducer.SetInitialValue(buffer[MFEM_THREAD_ID(x)]);
|
||||
// serial part
|
||||
for (int idx = 0; idx < items_per_thread; ++idx)
|
||||
{
|
||||
int i = MFEM_THREAD_ID(x) +
|
||||
(idx + work_idx * items_per_thread) * MFEM_THREAD_SIZE(x);
|
||||
if (i < N)
|
||||
{
|
||||
body(i, buffer[MFEM_THREAD_ID(x)]);
|
||||
}
|
||||
else
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
// binary tree reduction
|
||||
for (int i = (MFEM_THREAD_SIZE(x) >> 1); i > 0; i >>= 1)
|
||||
{
|
||||
MFEM_SYNC_THREAD;
|
||||
if (MFEM_THREAD_ID(x) < i)
|
||||
{
|
||||
reducer.Join(buffer[MFEM_THREAD_ID(x)], buffer[MFEM_THREAD_ID(x) + i]);
|
||||
}
|
||||
}
|
||||
if (MFEM_THREAD_ID(x) == 0)
|
||||
{
|
||||
work[work_idx] = buffer[0];
|
||||
}
|
||||
}
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
@brief Performs a 1D reduction on the range [0,N).
|
||||
@a res initial value and where the result will be written.
|
||||
@a body reduction function body.
|
||||
@a reducer helper for joining two reduced values.
|
||||
@a use_dev true to perform the reduction on the device, if possible.
|
||||
@a workspace temporary workspace used for device reductions. May be resized to
|
||||
a larger capacity as needed. Preferably should have MemoryType::MANAGED or
|
||||
MemoryType::HOST_PINNED. TODO: replace with internal temporary workspace
|
||||
vectors once that's added to the memory manager.
|
||||
@tparam T value_type to operate on
|
||||
*/
|
||||
template <class T, class B, class R>
|
||||
void reduce(int N, T &res, B &&body, const R &reducer, bool use_dev,
|
||||
Array<T> &workspace)
|
||||
{
|
||||
if (N == 0)
|
||||
{
|
||||
return;
|
||||
}
|
||||
|
||||
#if defined(MFEM_USE_HIP) || defined(MFEM_USE_CUDA)
|
||||
if (use_dev &&
|
||||
mfem::Device::Allows(Backend::CUDA | Backend::HIP | Backend::RAJA_CUDA |
|
||||
Backend::RAJA_HIP))
|
||||
{
|
||||
using red_type = internal::reduction_kernel<typename std::decay<B>::type,
|
||||
typename std::decay<R>::type>;
|
||||
// max block size is 256, but can be smaller
|
||||
int block_size = std::min<int>(red_type::max_blocksize(),
|
||||
1ll << red_type::block_log2(N));
|
||||
|
||||
int num_mp = Device::NumMultiprocessors(Device::GetId());
|
||||
#if defined(MFEM_USE_CUDA)
|
||||
// good value of mp_sat found experimentally on Lassen
|
||||
constexpr int mp_sat = 8;
|
||||
#elif defined(MFEM_USE_HIP)
|
||||
// good value of mp_sat found experimentally on Tuolumne
|
||||
constexpr int mp_sat = 4;
|
||||
#else
|
||||
num_mp = 1;
|
||||
constexpr int mp_sat = 1;
|
||||
#endif
|
||||
// determine how many items each thread should sum during the serial
|
||||
// portion
|
||||
int nblocks = std::min(mp_sat * num_mp, (N + block_size - 1) / block_size);
|
||||
int items_per_thread =
|
||||
(N + block_size * nblocks - 1) / (block_size * nblocks);
|
||||
|
||||
red_type red{nullptr, std::forward<B>(body), reducer, N, items_per_thread};
|
||||
// allocate res to fit block_size entries
|
||||
auto mt = workspace.GetMemory().GetMemoryType();
|
||||
if (mt != MemoryType::HOST_PINNED && mt != MemoryType::MANAGED)
|
||||
{
|
||||
mt = MemoryType::HOST_PINNED;
|
||||
}
|
||||
workspace.SetSize(nblocks, mt);
|
||||
auto work = workspace.HostWrite();
|
||||
red.work = work;
|
||||
forall_2D(nblocks, block_size, 1, std::move(red));
|
||||
// wait for results
|
||||
MFEM_DEVICE_SYNC;
|
||||
for (int i = 0; i < nblocks; ++i)
|
||||
{
|
||||
reducer.Join(res, work[i]);
|
||||
}
|
||||
return;
|
||||
}
|
||||
#endif
|
||||
|
||||
for (int i = 0; i < N; ++i)
|
||||
{
|
||||
body(i, res);
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_FORALL_HPP
|
||||
|
||||
+3
-1
@@ -47,7 +47,9 @@
|
||||
#define MFEM_THREAD_ID(k) hipThreadIdx_ ##k
|
||||
#define MFEM_THREAD_SIZE(k) hipBlockDim_ ##k
|
||||
#define MFEM_FOREACH_THREAD(i,k,N) \
|
||||
for(int i=hipThreadIdx_ ##k; i<N; i+=hipBlockDim_ ##k)
|
||||
for(int i=hipThreadIdx_ ##k; i<N; i+=hipBlockDim_ ##k)
|
||||
#define MFEM_FOREACH_THREAD_DIRECT(i,k,N) \
|
||||
if(const int i=hipThreadIdx_ ##k; i<N)
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
|
||||
@@ -641,7 +641,7 @@ public:
|
||||
UmpireMemorySpace(name, "DEVICE") {}
|
||||
void Alloc(Memory &base) override
|
||||
{ base.d_ptr = allocator.allocate(base.bytes); }
|
||||
void Dealloc(Memory &base) override { rm.deallocate(base.d_ptr); }
|
||||
void Dealloc(Memory &base) override { allocator.deallocate(base.d_ptr); }
|
||||
void *HtoD(void *dst, const void *src, size_t bytes) override
|
||||
{
|
||||
#ifdef MFEM_USE_CUDA
|
||||
|
||||
+156
-3
@@ -12,11 +12,10 @@
|
||||
#ifndef MFEM_REDUCERS_HPP
|
||||
#define MFEM_REDUCERS_HPP
|
||||
|
||||
#include "array.hpp"
|
||||
#include "forall.hpp"
|
||||
|
||||
#include <climits>
|
||||
#include <cmath>
|
||||
#include <cstdint>
|
||||
#include <limits>
|
||||
#include <type_traits>
|
||||
|
||||
@@ -439,6 +438,160 @@ template <class I> struct ArgMinMaxReducer<double, I>
|
||||
}
|
||||
};
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
/**
|
||||
@brief Device portion of a reduction over a 1D sequence [0, N)
|
||||
@tparam B Reduction body. Must be callable with the signature void(int i, value_type&
|
||||
v), where i is the index to evaluate and v is the value to update.
|
||||
@tparam R Reducer capable of combining values of type value_type. See reducers.hpp for
|
||||
pre-defined reducers.
|
||||
*/
|
||||
template<class B, class R> struct reduction_kernel
|
||||
{
|
||||
/// value type body and reducer operate on.
|
||||
using value_type = typename R::value_type;
|
||||
/// workspace for the intermediate reduction results
|
||||
mutable value_type *work;
|
||||
B body;
|
||||
R reducer;
|
||||
/// Length of sequence to reduce over.
|
||||
int N;
|
||||
/// How many items is each thread responsible for during the serial phase
|
||||
int items_per_thread;
|
||||
|
||||
constexpr static MFEM_HOST_DEVICE int max_blocksize() { return 256; }
|
||||
|
||||
/// helper for computing the reduction block size
|
||||
static int block_log2(unsigned N)
|
||||
{
|
||||
#if defined(__GNUC__) or defined(__clang__)
|
||||
return N ? (sizeof(unsigned) * 8 - __builtin_clz(N)) : 0;
|
||||
#elif defined(_MSC_VER)
|
||||
return sizeof(unsigned) * 8 - __lzclz(N);
|
||||
#else
|
||||
int res = 0;
|
||||
while (N)
|
||||
{
|
||||
N >>= 1;
|
||||
++res;
|
||||
}
|
||||
return res;
|
||||
#endif
|
||||
}
|
||||
|
||||
MFEM_HOST_DEVICE void operator()(int work_idx) const
|
||||
{
|
||||
MFEM_SHARED value_type buffer[max_blocksize()];
|
||||
reducer.SetInitialValue(buffer[MFEM_THREAD_ID(x)]);
|
||||
// serial part
|
||||
for (int idx = 0; idx < items_per_thread; ++idx)
|
||||
{
|
||||
int i = MFEM_THREAD_ID(x) +
|
||||
(idx + work_idx * items_per_thread) * MFEM_THREAD_SIZE(x);
|
||||
if (i < N)
|
||||
{
|
||||
body(i, buffer[MFEM_THREAD_ID(x)]);
|
||||
}
|
||||
else
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
// binary tree reduction
|
||||
for (int i = (MFEM_THREAD_SIZE(x) >> 1); i > 0; i >>= 1)
|
||||
{
|
||||
MFEM_SYNC_THREAD;
|
||||
if (MFEM_THREAD_ID(x) < i)
|
||||
{
|
||||
reducer.Join(buffer[MFEM_THREAD_ID(x)], buffer[MFEM_THREAD_ID(x) + i]);
|
||||
}
|
||||
}
|
||||
if (MFEM_THREAD_ID(x) == 0)
|
||||
{
|
||||
work[work_idx] = buffer[0];
|
||||
}
|
||||
}
|
||||
};
|
||||
}
|
||||
|
||||
/**
|
||||
@brief Performs a 1D reduction on the range [0,N).
|
||||
@a res initial value and where the result will be written.
|
||||
@a body reduction function body.
|
||||
@a reducer helper for joining two reduced values.
|
||||
@a use_dev true to perform the reduction on the device, if possible.
|
||||
@a workspace temporary workspace used for device reductions. May be resized to
|
||||
a larger capacity as needed. Preferably should have MemoryType::MANAGED or
|
||||
MemoryType::HOST_PINNED. TODO: replace with internal temporary workspace
|
||||
vectors once that's added to the memory manager.
|
||||
@tparam T value_type to operate on
|
||||
*/
|
||||
template <class T, class B, class R>
|
||||
void reduce(int N, T &res, B &&body, const R &reducer, bool use_dev,
|
||||
Array<T> &workspace)
|
||||
{
|
||||
if (N == 0)
|
||||
{
|
||||
return;
|
||||
}
|
||||
|
||||
#if defined(MFEM_USE_HIP) || defined(MFEM_USE_CUDA)
|
||||
if (use_dev &&
|
||||
mfem::Device::Allows(Backend::CUDA | Backend::HIP | Backend::RAJA_CUDA |
|
||||
Backend::RAJA_HIP))
|
||||
{
|
||||
using red_type = internal::reduction_kernel<typename std::decay<B>::type,
|
||||
typename std::decay<R>::type>;
|
||||
// max block size is 256, but can be smaller
|
||||
int block_size = std::min<int>(red_type::max_blocksize(),
|
||||
1ll << red_type::block_log2(N));
|
||||
|
||||
int num_mp = Device::NumMultiprocessors(Device::GetId());
|
||||
#if defined(MFEM_USE_CUDA)
|
||||
// good value of mp_sat found experimentally on Lassen
|
||||
constexpr int mp_sat = 8;
|
||||
#elif defined(MFEM_USE_HIP)
|
||||
// good value of mp_sat found experimentally on Tuolumne
|
||||
constexpr int mp_sat = 4;
|
||||
#else
|
||||
num_mp = 1;
|
||||
constexpr int mp_sat = 1;
|
||||
#endif
|
||||
// determine how many items each thread should sum during the serial
|
||||
// portion
|
||||
int nblocks = std::min(mp_sat * num_mp, (N + block_size - 1) / block_size);
|
||||
int items_per_thread =
|
||||
(N + block_size * nblocks - 1) / (block_size * nblocks);
|
||||
|
||||
red_type red{nullptr, std::forward<B>(body), reducer, N, items_per_thread};
|
||||
// allocate res to fit block_size entries
|
||||
auto mt = workspace.GetMemory().GetMemoryType();
|
||||
if (mt != MemoryType::HOST_PINNED && mt != MemoryType::MANAGED)
|
||||
{
|
||||
mt = MemoryType::HOST_PINNED;
|
||||
}
|
||||
workspace.SetSize(nblocks, mt);
|
||||
auto work = workspace.HostWrite();
|
||||
red.work = work;
|
||||
forall_2D(nblocks, block_size, 1, std::move(red));
|
||||
// wait for results
|
||||
MFEM_DEVICE_SYNC;
|
||||
for (int i = 0; i < nblocks; ++i)
|
||||
{
|
||||
reducer.Join(res, work[i]);
|
||||
}
|
||||
return;
|
||||
}
|
||||
#endif
|
||||
|
||||
for (int i = 0; i < N; ++i)
|
||||
{
|
||||
body(i, res);
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
#endif // MFEM_REDUCERS_HPP
|
||||
|
||||
@@ -21,6 +21,7 @@ list(APPEND SRCS
|
||||
blockvector.cpp
|
||||
complex_densemat.cpp
|
||||
complex_operator.cpp
|
||||
complex_vector.cpp
|
||||
constraints.cpp
|
||||
densemat.cpp
|
||||
symmat.cpp
|
||||
@@ -47,6 +48,7 @@ list(APPEND HDRS
|
||||
blockvector.hpp
|
||||
complex_densemat.hpp
|
||||
complex_operator.hpp
|
||||
complex_vector.hpp
|
||||
constraints.hpp
|
||||
densemat.hpp
|
||||
dinvariants.hpp
|
||||
|
||||
@@ -9,6 +9,7 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../general/forall.hpp"
|
||||
#include "complex_densemat.hpp"
|
||||
#include "lapack.hpp"
|
||||
#include <complex>
|
||||
@@ -16,6 +17,8 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
using namespace std;
|
||||
|
||||
DenseMatrix & ComplexDenseMatrix::real()
|
||||
{
|
||||
MFEM_ASSERT(Op_Real_, "ComplexDenseMatrix has no real part!");
|
||||
@@ -1017,4 +1020,303 @@ void ComplexCholeskyFactors::GetInverseMatrix(int m, real_t * X_r,
|
||||
delete [] X;
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix::ComplexTypeDenseMatrix()
|
||||
: height(0), width(0)
|
||||
{}
|
||||
|
||||
ComplexTypeDenseMatrix::ComplexTypeDenseMatrix(const ComplexTypeDenseMatrix &m)
|
||||
: height(m.Height()), width(m.Width())
|
||||
{
|
||||
const int hw = height * width;
|
||||
if (hw > 0)
|
||||
{
|
||||
MFEM_ASSERT(m.data, "invalid source matrix");
|
||||
data.New(hw);
|
||||
std::memcpy(data, m.data, sizeof(complex_t)*hw);
|
||||
}
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix::ComplexTypeDenseMatrix(const DenseMatrix &m)
|
||||
: height(m.Height()), width(m.Width())
|
||||
{
|
||||
const int hw = height * width;
|
||||
if (hw > 0)
|
||||
{
|
||||
MFEM_ASSERT(m.data, "invalid source matrix");
|
||||
data.New(hw);
|
||||
|
||||
for (int i = 0; i < hw; i++)
|
||||
{
|
||||
data[i] = m.data[i];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix::ComplexTypeDenseMatrix(int s)
|
||||
: height(s), width(s)
|
||||
{
|
||||
MFEM_ASSERT(s >= 0, "invalid DenseMatrix size: " << s);
|
||||
if (s > 0)
|
||||
{
|
||||
data.New(s*s);
|
||||
*this = 0.0; // init with zeroes
|
||||
}
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix::ComplexTypeDenseMatrix(int m, int n)
|
||||
: height(m), width(n)
|
||||
{
|
||||
MFEM_ASSERT(m >= 0 && n >= 0,
|
||||
"invalid DenseMatrix size: " << m << " x " << n);
|
||||
const int capacity = m*n;
|
||||
if (capacity > 0)
|
||||
{
|
||||
data.New(capacity);
|
||||
*this = 0.0; // init with zeroes
|
||||
}
|
||||
}
|
||||
|
||||
void ComplexTypeDenseMatrix::SetSize(int h, int w)
|
||||
{
|
||||
MFEM_ASSERT(h >= 0 && w >= 0,
|
||||
"invalid ComplexTypeDenseMatrix size: " << h << " x " << w);
|
||||
if (Height() == h && Width() == w)
|
||||
{
|
||||
return;
|
||||
}
|
||||
height = h;
|
||||
width = w;
|
||||
const int hw = h*w;
|
||||
if (hw > data.Capacity())
|
||||
{
|
||||
data.Delete();
|
||||
data.New(hw);
|
||||
*this = 0.0; // init with zeroes
|
||||
}
|
||||
}
|
||||
|
||||
/// Returns reference to a_{ij}.
|
||||
complex_t &ComplexTypeDenseMatrix::Elem(int i, int j)
|
||||
{
|
||||
return (*this)(i,j);
|
||||
}
|
||||
|
||||
/// Returns constant reference to a_{ij}.
|
||||
const complex_t &ComplexTypeDenseMatrix::Elem(int i, int j) const
|
||||
{
|
||||
return (*this)(i,j);
|
||||
}
|
||||
|
||||
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator=(real_t c)
|
||||
{
|
||||
const int s = Height()*Width();
|
||||
for (int i = 0; i < s; i++)
|
||||
{
|
||||
data[i] = c;
|
||||
}
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator=(complex_t c)
|
||||
{
|
||||
const int s = Height()*Width();
|
||||
for (int i = 0; i < s; i++)
|
||||
{
|
||||
data[i] = c;
|
||||
}
|
||||
return *this;
|
||||
}
|
||||
|
||||
/// Copy the matrix entries from the given array
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator=(const real_t *d)
|
||||
{
|
||||
const int s = Height()*Width();
|
||||
for (int i = 0; i < s; i++)
|
||||
{
|
||||
data[i] = d[i];
|
||||
}
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator=
|
||||
(const complex_t *d)
|
||||
{
|
||||
const int s = Height()*Width();
|
||||
for (int i = 0; i < s; i++)
|
||||
{
|
||||
data[i] = d[i];
|
||||
}
|
||||
return *this;
|
||||
}
|
||||
|
||||
/// Sets the matrix size and elements equal to those of m
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator=(const DenseMatrix &m)
|
||||
{
|
||||
SetSize(m.height, m.width);
|
||||
|
||||
const int hw = height * width;
|
||||
for (int i = 0; i < hw; i++)
|
||||
{
|
||||
data[i] = m.data[i];
|
||||
}
|
||||
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator=
|
||||
(const ComplexTypeDenseMatrix &m)
|
||||
{
|
||||
SetSize(m.height, m.width);
|
||||
|
||||
const int hw = height * width;
|
||||
for (int i = 0; i < hw; i++)
|
||||
{
|
||||
data[i] = m.data[i];
|
||||
}
|
||||
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator+=(const real_t *m)
|
||||
{
|
||||
const int s = Height()*Width();
|
||||
for (int i = 0; i < s; i++)
|
||||
{
|
||||
data[i] += m[i];
|
||||
}
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator+=
|
||||
(const complex_t *m)
|
||||
{
|
||||
const int s = Height()*Width();
|
||||
for (int i = 0; i < s; i++)
|
||||
{
|
||||
data[i] += m[i];
|
||||
}
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator+=(const DenseMatrix &m)
|
||||
{
|
||||
const int hw = height * width;
|
||||
for (int i = 0; i < hw; i++)
|
||||
{
|
||||
data[i] += m.data[i];
|
||||
}
|
||||
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator+=
|
||||
(const ComplexTypeDenseMatrix &m)
|
||||
{
|
||||
const int hw = height * width;
|
||||
for (int i = 0; i < hw; i++)
|
||||
{
|
||||
data[i] += m.data[i];
|
||||
}
|
||||
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator-=(const DenseMatrix &m)
|
||||
{
|
||||
const int hw = height * width;
|
||||
for (int i = 0; i < hw; i++)
|
||||
{
|
||||
data[i] -= m.data[i];
|
||||
}
|
||||
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator-=
|
||||
(const ComplexTypeDenseMatrix &m)
|
||||
{
|
||||
const int hw = height * width;
|
||||
for (int i = 0; i < hw; i++)
|
||||
{
|
||||
data[i] -= m.data[i];
|
||||
}
|
||||
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator*=(real_t c)
|
||||
{
|
||||
const int hw = height * width;
|
||||
for (int i = 0; i < hw; i++)
|
||||
{
|
||||
data[i] *= c;
|
||||
}
|
||||
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::operator*=(complex_t c)
|
||||
{
|
||||
const int hw = height * width;
|
||||
for (int i = 0; i < hw; i++)
|
||||
{
|
||||
data[i] *= c;
|
||||
}
|
||||
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix &ComplexTypeDenseMatrix::Set(const DenseMatrix &Mr,
|
||||
const DenseMatrix &Mi)
|
||||
{
|
||||
MFEM_ASSERT(height == Mr.Height() && height == Mi.Height() &&
|
||||
width == Mr.Width() && width == Mi.Width(),
|
||||
"incompatible Matrices!");
|
||||
|
||||
const int hw = height * width;
|
||||
for (int i = 0; i < hw; i++)
|
||||
{
|
||||
data[i] = complex_t(Mr.data[i], Mi.data[i]);
|
||||
}
|
||||
|
||||
return *this;
|
||||
}
|
||||
|
||||
void ComplexTypeDenseMatrix::Swap(ComplexTypeDenseMatrix &other)
|
||||
{
|
||||
mfem::Swap(width, other.width);
|
||||
mfem::Swap(height, other.height);
|
||||
mfem::Swap(data, other.data);
|
||||
}
|
||||
|
||||
ComplexTypeDenseMatrix::~ComplexTypeDenseMatrix()
|
||||
{
|
||||
data.Delete();
|
||||
}
|
||||
|
||||
const DenseMatrix &ComplexTypeDenseMatrix::real() const
|
||||
{
|
||||
re_part.SetSize(height, width);
|
||||
const int hw = height * width;
|
||||
for (int i = 0; i < hw; i++)
|
||||
{
|
||||
re_part.data[i] = data[i].real();
|
||||
}
|
||||
|
||||
return re_part;
|
||||
}
|
||||
|
||||
const DenseMatrix &ComplexTypeDenseMatrix::imag() const
|
||||
{
|
||||
im_part.SetSize(height, width);
|
||||
const int hw = height * width;
|
||||
for (int i = 0; i < hw; i++)
|
||||
{
|
||||
im_part.data[i] = data[i].imag();
|
||||
}
|
||||
|
||||
return im_part;
|
||||
}
|
||||
|
||||
} // mfem namespace
|
||||
|
||||
@@ -13,6 +13,7 @@
|
||||
#define MFEM_COMPLEX_DENSEMAT
|
||||
|
||||
#include "complex_operator.hpp"
|
||||
#include "../general/complex_type.hpp"
|
||||
#include <complex>
|
||||
|
||||
namespace mfem
|
||||
@@ -241,6 +242,220 @@ public:
|
||||
|
||||
};
|
||||
|
||||
class ComplexTypeDenseMatrix
|
||||
{
|
||||
protected:
|
||||
int height; ///< Dimension of the output / number of rows in the matrix.
|
||||
int width; ///< Dimension of the input / number of columns in the matrix.
|
||||
|
||||
private:
|
||||
Memory<complex_t > data;
|
||||
|
||||
mutable DenseMatrix re_part;
|
||||
mutable DenseMatrix im_part;
|
||||
|
||||
public:
|
||||
/** Default constructor for DenseMatrix.
|
||||
Sets data = NULL and height = width = 0. */
|
||||
ComplexTypeDenseMatrix();
|
||||
|
||||
/// Copy constructor
|
||||
ComplexTypeDenseMatrix(const ComplexTypeDenseMatrix &);
|
||||
ComplexTypeDenseMatrix(const DenseMatrix &);
|
||||
|
||||
/// Creates square matrix of size s.
|
||||
explicit ComplexTypeDenseMatrix(int s);
|
||||
|
||||
/// Creates rectangular matrix of size m x n.
|
||||
ComplexTypeDenseMatrix(int m, int n);
|
||||
|
||||
/// Construct a ComplexTypeDenseMatrix using an existing data array.
|
||||
/** The ComplexTypeDenseMatrix does not assume ownership of the data array,
|
||||
i.e. it will not delete the array. */
|
||||
ComplexTypeDenseMatrix(complex_t *d, int h, int w)
|
||||
: height(h), width(w) { UseExternalData(d, h, w); }
|
||||
|
||||
/// Create a dense matrix using a braced initializer list
|
||||
/// The inner lists correspond to rows of the matrix
|
||||
template <int M, int N, typename T = real_t>
|
||||
explicit ComplexTypeDenseMatrix(const T (&values)[M][N]) :
|
||||
ComplexTypeDenseMatrix(
|
||||
M, N)
|
||||
{
|
||||
// DenseMatrix is column-major so copies have to be element-wise
|
||||
for (int i = 0; i < M; i++)
|
||||
{
|
||||
for (int j = 0; j < N; j++)
|
||||
{
|
||||
(*this)(i,j) = values[i][j];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/// Change the data array and the size of the DenseMatrix.
|
||||
/** The DenseMatrix does not assume ownership of the data array, i.e. it will
|
||||
not delete the data array @a d. This method should not be used with
|
||||
DenseMatrix that owns its current data array. */
|
||||
void UseExternalData(complex_t *d, int h, int w)
|
||||
{
|
||||
data.Wrap(d, h*w, false);
|
||||
height = h; width = w;
|
||||
}
|
||||
|
||||
/// Change the data array and the size of the DenseMatrix.
|
||||
/** The DenseMatrix does not assume ownership of the data array, i.e. it will
|
||||
not delete the new array @a d. This method will delete the current data
|
||||
array, if owned. */
|
||||
void Reset(complex_t *d, int h, int w)
|
||||
{ if (OwnsData()) { data.Delete(); } UseExternalData(d, h, w); }
|
||||
|
||||
/** Clear the data array and the dimensions of the DenseMatrix. This method
|
||||
should not be used with DenseMatrix that owns its current data array. */
|
||||
void ClearExternalData() { data.Reset(); height = width = 0; }
|
||||
|
||||
/// Delete the matrix data array (if owned) and reset the matrix state.
|
||||
void Clear()
|
||||
{ if (OwnsData()) { data.Delete(); } ClearExternalData(); }
|
||||
|
||||
/// Get the height (size of output) of the Operator. Synonym with NumRows().
|
||||
inline int Height() const { return height; }
|
||||
/** @brief Get the number of rows (size of output) of the Operator. Synonym
|
||||
with Height(). */
|
||||
inline int NumRows() const { return height; }
|
||||
|
||||
/// Get the width (size of input) of the Operator. Synonym with NumCols().
|
||||
inline int Width() const { return width; }
|
||||
/** @brief Get the number of columns (size of input) of the Operator. Synonym
|
||||
with Width(). */
|
||||
inline int NumCols() const { return width; }
|
||||
|
||||
/// For backward compatibility define Size to be synonym of Width()
|
||||
int Size() const { return Width(); }
|
||||
|
||||
// Total size = width*height
|
||||
int TotalSize() const { return width*height; }
|
||||
|
||||
/// Change the size of the DenseMatrix to s x s.
|
||||
void SetSize(int s) { SetSize(s, s); }
|
||||
|
||||
/// Change the size of the DenseMatrix to h x w.
|
||||
void SetSize(int h, int w);
|
||||
|
||||
/// Returns the matrix data array.
|
||||
inline complex_t *Data() const
|
||||
{
|
||||
return const_cast<complex_t*>
|
||||
((const complex_t*)data);
|
||||
}
|
||||
|
||||
/// Returns the matrix data array.
|
||||
inline complex_t *GetData() const { return Data(); }
|
||||
|
||||
Memory<complex_t > &GetMemory() { return data; }
|
||||
const Memory<complex_t > &GetMemory() const { return data; }
|
||||
|
||||
/// Return the DenseMatrix data (host pointer) ownership flag.
|
||||
inline bool OwnsData() const { return data.OwnsHostPtr(); }
|
||||
|
||||
/// Returns reference to a_{ij}.
|
||||
inline complex_t &operator()(int i, int j);
|
||||
|
||||
/// Returns constant reference to a_{ij}.
|
||||
inline const complex_t &operator()(int i, int j) const;
|
||||
|
||||
/// Returns reference to a_{ij}.
|
||||
complex_t &Elem(int i, int j);
|
||||
|
||||
/// Returns constant reference to a_{ij}.
|
||||
const complex_t &Elem(int i, int j) const;
|
||||
|
||||
/// Sets the matrix elements equal to constant c
|
||||
ComplexTypeDenseMatrix &operator=(real_t c);
|
||||
ComplexTypeDenseMatrix &operator=(complex_t c);
|
||||
|
||||
/// Copy the matrix entries from the given array
|
||||
ComplexTypeDenseMatrix &operator=(const real_t *d);
|
||||
ComplexTypeDenseMatrix &operator=(const complex_t *d);
|
||||
|
||||
/// Sets the matrix size and elements equal to those of m
|
||||
ComplexTypeDenseMatrix &operator=(const DenseMatrix &m);
|
||||
ComplexTypeDenseMatrix &operator=(const ComplexTypeDenseMatrix &m);
|
||||
|
||||
ComplexTypeDenseMatrix &operator+=(const real_t *m);
|
||||
ComplexTypeDenseMatrix &operator+=(const complex_t *m);
|
||||
ComplexTypeDenseMatrix &operator+=(const DenseMatrix &m);
|
||||
ComplexTypeDenseMatrix &operator+=(const ComplexTypeDenseMatrix &m);
|
||||
|
||||
ComplexTypeDenseMatrix &operator-=(const DenseMatrix &m);
|
||||
ComplexTypeDenseMatrix &operator-=(const ComplexTypeDenseMatrix &m);
|
||||
|
||||
ComplexTypeDenseMatrix &operator*=(real_t c);
|
||||
ComplexTypeDenseMatrix &operator*=(complex_t c);
|
||||
|
||||
/// (*this) = x + i * y
|
||||
ComplexTypeDenseMatrix &Set(const DenseMatrix &x, const DenseMatrix &y);
|
||||
|
||||
std::size_t MemoryUsage() const
|
||||
{ return data.Capacity() * sizeof(complex_t); }
|
||||
|
||||
/// Shortcut for mfem::Read( GetMemory(), TotalSize(), on_dev).
|
||||
const complex_t *Read(bool on_dev = true) const
|
||||
{ return mfem::Read(data, Height()*Width(), on_dev); }
|
||||
|
||||
/// Shortcut for mfem::Read(GetMemory(), TotalSize(), false).
|
||||
const complex_t *HostRead() const
|
||||
{ return mfem::Read(data, Height()*Width(), false); }
|
||||
|
||||
/// Shortcut for mfem::Write(GetMemory(), TotalSize(), on_dev).
|
||||
complex_t *Write(bool on_dev = true)
|
||||
{ return mfem::Write(data, Height()*Width(), on_dev); }
|
||||
|
||||
/// Shortcut for mfem::Write(GetMemory(), TotalSize(), false).
|
||||
complex_t *HostWrite()
|
||||
{ return mfem::Write(data, Height()*Width(), false); }
|
||||
|
||||
/// Shortcut for mfem::ReadWrite(GetMemory(), TotalSize(), on_dev).
|
||||
complex_t *ReadWrite(bool on_dev = true)
|
||||
{ return mfem::ReadWrite(data, Height()*Width(), on_dev); }
|
||||
|
||||
/// Shortcut for mfem::ReadWrite(GetMemory(), TotalSize(), false).
|
||||
complex_t *HostReadWrite()
|
||||
{ return mfem::ReadWrite(data, Height()*Width(), false); }
|
||||
|
||||
void Swap(ComplexTypeDenseMatrix &other);
|
||||
|
||||
/// Return a reference to the real part of this matrix
|
||||
const DenseMatrix &real() const;
|
||||
|
||||
/// Return a reference to the imaginary part of this matrix
|
||||
const DenseMatrix &imag() const;
|
||||
|
||||
/// Destroys dense matrix.
|
||||
virtual ~ComplexTypeDenseMatrix();
|
||||
};
|
||||
|
||||
/// Specialization of the template function Swap<> for class ComplexTypeDenseMatrix
|
||||
template<> inline void Swap<ComplexTypeDenseMatrix>(ComplexTypeDenseMatrix &a,
|
||||
ComplexTypeDenseMatrix &b)
|
||||
{
|
||||
a.Swap(b);
|
||||
}
|
||||
|
||||
// Inline methods
|
||||
|
||||
inline complex_t &ComplexTypeDenseMatrix::operator()(int i, int j)
|
||||
{
|
||||
MFEM_ASSERT(data && i >= 0 && i < height && j >= 0 && j < width, "");
|
||||
return data[i+j*height];
|
||||
}
|
||||
|
||||
inline const complex_t &ComplexTypeDenseMatrix::operator()
|
||||
(int i, int j) const
|
||||
{
|
||||
MFEM_ASSERT(data && i >= 0 && i < height && j >= 0 && j < width, "");
|
||||
return data[i+j*height];
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_COMPLEX_DENSEMAT
|
||||
|
||||
@@ -0,0 +1,424 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../general/forall.hpp"
|
||||
#include "../general/reducers.hpp"
|
||||
#include "complex_vector.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
ComplexVector::ComplexVector(const ComplexVector &v)
|
||||
{
|
||||
const int s = v.Size();
|
||||
size = s;
|
||||
if (s > 0)
|
||||
{
|
||||
MFEM_ASSERT(!v.data.Empty(), "invalid source vector");
|
||||
data.New(s, v.data.GetMemoryType());
|
||||
data.CopyFrom(v.data, s);
|
||||
}
|
||||
UseDevice(v.UseDevice());
|
||||
}
|
||||
|
||||
ComplexVector::ComplexVector(const Vector &v)
|
||||
{
|
||||
const int s = v.Size();
|
||||
size = s;
|
||||
if (s > 0)
|
||||
{
|
||||
MFEM_ASSERT(!v.data.Empty(), "invalid source vector");
|
||||
data.New(s, v.data.GetMemoryType());
|
||||
MFEM_FORALL(i, size, data[i] = v.data[i]; );
|
||||
}
|
||||
UseDevice(v.UseDevice());
|
||||
}
|
||||
|
||||
ComplexVector::ComplexVector(ComplexVector &&v)
|
||||
{
|
||||
*this = std::move(v);
|
||||
}
|
||||
|
||||
complex_t &ComplexVector::Elem(int i)
|
||||
{
|
||||
return operator()(i);
|
||||
}
|
||||
|
||||
const complex_t &ComplexVector::Elem(int i) const
|
||||
{
|
||||
return operator()(i);
|
||||
}
|
||||
|
||||
complex_t ComplexVector::operator*(const complex_t *v) const
|
||||
{
|
||||
HostRead();
|
||||
complex_t dot = 0.0;
|
||||
#ifdef MFEM_USE_LEGACY_OPENMP
|
||||
#pragma omp parallel for reduction(+:dot)
|
||||
#endif
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
dot += data[i] * v[i];
|
||||
}
|
||||
return dot;
|
||||
}
|
||||
|
||||
complex_t ComplexVector::operator*(const real_t *v) const
|
||||
{
|
||||
HostRead();
|
||||
complex_t dot = 0.0;
|
||||
#ifdef MFEM_USE_LEGACY_OPENMP
|
||||
#pragma omp parallel for reduction(+:dot)
|
||||
#endif
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
dot += data[i] * v[i];
|
||||
}
|
||||
return dot;
|
||||
}
|
||||
|
||||
complex_t ComplexVector::operator*(const ComplexVector &v) const
|
||||
{
|
||||
MFEM_ASSERT(size == v.size, "incompatible Vectors!");
|
||||
|
||||
if (size == 0) { return 0.0; }
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const auto m_data = Read(use_dev), v_data = v.Read(use_dev);
|
||||
|
||||
// The standard way of computing the dot product is non-deterministic
|
||||
complex_t prod = 0.0;
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
prod += m_data[i] * v_data[i];
|
||||
}
|
||||
return prod;
|
||||
}
|
||||
|
||||
complex_t ComplexVector::operator*(const Vector &v) const
|
||||
{
|
||||
MFEM_ASSERT(size == v.size, "incompatible Vectors!");
|
||||
|
||||
if (size == 0) { return 0.0; }
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const auto m_data = Read(use_dev);
|
||||
const auto v_data = v.Read(use_dev);
|
||||
|
||||
// The standard way of computing the dot product is non-deterministic
|
||||
complex_t prod = 0.0;
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
prod += m_data[i] * v_data[i];
|
||||
}
|
||||
return prod;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator=(const complex_t *v)
|
||||
{
|
||||
HostRead();
|
||||
MFEM_FORALL(i, size, data[i] = v[i]; );
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator=(const real_t *v)
|
||||
{
|
||||
HostRead();
|
||||
MFEM_FORALL(i, size, data[i] = v[i]; );
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator=(const ComplexVector &v)
|
||||
{
|
||||
#if 0
|
||||
SetSize(v.Size(), v.data.GetMemoryType());
|
||||
data.CopyFrom(v.data, v.Size());
|
||||
UseDevice(v.UseDevice());
|
||||
#else
|
||||
SetSize(v.Size());
|
||||
const bool vuse = v.UseDevice();
|
||||
const bool use_dev = UseDevice() || vuse;
|
||||
v.UseDevice(use_dev);
|
||||
// keep 'data' where it is, unless 'use_dev' is true
|
||||
if (use_dev) { Write(); }
|
||||
data.CopyFrom(v.data, v.Size());
|
||||
v.UseDevice(vuse);
|
||||
#endif
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator=(const Vector &v)
|
||||
{
|
||||
SetSize(v.Size());
|
||||
const bool vuse = v.UseDevice();
|
||||
const bool use_dev = UseDevice() || vuse;
|
||||
v.UseDevice(use_dev);
|
||||
// keep 'data' where it is, unless 'use_dev' is true
|
||||
if (use_dev) { Write(); }
|
||||
MFEM_FORALL(i, size, data[i] = v[i]; );
|
||||
v.UseDevice(vuse);
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator=(ComplexVector &&v)
|
||||
{
|
||||
v.Swap(*this);
|
||||
if (this != &v) { v.Destroy(); }
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator=(complex_t value)
|
||||
{
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
auto y = Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] = value; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator=(real_t value)
|
||||
{
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
auto y = Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] = value; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator*=(complex_t c)
|
||||
{
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] *= c; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator*=(real_t c)
|
||||
{
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] *= c; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator*=(const ComplexVector &v)
|
||||
{
|
||||
MFEM_ASSERT(size == v.size, "incompatible Vectors!");
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] *= x[i]; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator*=(const Vector &v)
|
||||
{
|
||||
MFEM_ASSERT(size == v.size, "incompatible Vectors!");
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] *= x[i]; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator/=(complex_t c)
|
||||
{
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
const complex_t m = conj(c) / norm(c);
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] *= m; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator/=(real_t c)
|
||||
{
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
const real_t m = 1.0/c;
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] *= m; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator/=(const ComplexVector &v)
|
||||
{
|
||||
MFEM_ASSERT(size == v.size, "incompatible Vectors!");
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] /= x[i]; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator/=(const Vector &v)
|
||||
{
|
||||
MFEM_ASSERT(size == v.size, "incompatible Vectors!");
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] /= x[i]; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator-=(complex_t c)
|
||||
{
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] -= c; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator-=(real_t c)
|
||||
{
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] -= c; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator-=(const ComplexVector &v)
|
||||
{
|
||||
MFEM_ASSERT(size == v.size, "incompatible Vectors!");
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] -= x[i]; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator-=(const Vector &v)
|
||||
{
|
||||
MFEM_ASSERT(size == v.size, "incompatible Vectors!");
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] -= x[i]; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator+=(complex_t c)
|
||||
{
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] += c; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator+=(real_t c)
|
||||
{
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] += c; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator+=(const ComplexVector &v)
|
||||
{
|
||||
MFEM_ASSERT(size == v.size, "incompatible Vectors!");
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] += x[i]; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::operator+=(const Vector &v)
|
||||
{
|
||||
MFEM_ASSERT(size == v.size, "incompatible Vectors!");
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] += x[i]; });
|
||||
return *this;
|
||||
}
|
||||
|
||||
ComplexVector &ComplexVector::Set(const Vector &Vr, const Vector &Vi)
|
||||
{
|
||||
MFEM_ASSERT(size == Vr.size && size == Vi.size, "incompatible Vectors!");
|
||||
|
||||
const bool use_dev = UseDevice() || Vr.UseDevice() || Vi.UseDevice();
|
||||
const int N = size;
|
||||
const auto x = Vr.Read(use_dev);
|
||||
const auto y = Vi.Read(use_dev);
|
||||
auto z = Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ z[i] = complex_t(x[i], y[i]); });
|
||||
return *this;
|
||||
}
|
||||
|
||||
const Vector &ComplexVector::real() const
|
||||
{
|
||||
re_part.SetSize(size);
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
const auto z = Read(use_dev);
|
||||
auto x = re_part.Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ x[i] = z[i].real(); });
|
||||
return re_part;
|
||||
}
|
||||
|
||||
const Vector &ComplexVector::imag() const
|
||||
{
|
||||
im_part.SetSize(size);
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
const auto z = Read(use_dev);
|
||||
auto y = im_part.Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{ y[i] = z[i].imag(); });
|
||||
return im_part;
|
||||
}
|
||||
|
||||
}
|
||||
@@ -0,0 +1,479 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_COMPLEX_VECTOR
|
||||
#define MFEM_COMPLEX_VECTOR
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "../general/complex_type.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class ComplexVector
|
||||
{
|
||||
private:
|
||||
|
||||
Memory<complex_t > data;
|
||||
int size;
|
||||
|
||||
mutable Vector re_part;
|
||||
mutable Vector im_part;
|
||||
|
||||
public:
|
||||
|
||||
/// Default constructor for ComplexVector. Sets size = 0
|
||||
ComplexVector() : size(0) { }
|
||||
|
||||
/// Copy constructor. Allocates a new data array and copies the data.
|
||||
ComplexVector(const ComplexVector &);
|
||||
|
||||
/// Copy constructor. Allocates a new data array and copies the
|
||||
/// data into real part of this vector.
|
||||
ComplexVector(const Vector &);
|
||||
|
||||
/// Move constructor. "Steals" data from its argument.
|
||||
ComplexVector(ComplexVector&& v);
|
||||
|
||||
/// @brief Creates vector of size s.
|
||||
/// @warning Entries are not initialized to zero!
|
||||
explicit ComplexVector(int s);
|
||||
|
||||
/// Creates a vector referencing an array of complex<doubles>,
|
||||
/// owned by someone else.
|
||||
/// The pointer @a data_ can be NULL. The data array can be replaced later
|
||||
/// with SetData().
|
||||
ComplexVector(complex_t *data_, int size_)
|
||||
{ data.Wrap(data_, size_, false); size = size_; }
|
||||
|
||||
/// @brief Create a ComplexVector referencing a sub-vector of the
|
||||
// ComplexVector @a base starting at the given offset, @a
|
||||
// base_offset, and size @a size_.
|
||||
ComplexVector(ComplexVector &base, int base_offset, int size_)
|
||||
: data(base.data, base_offset, size_), size(size_) { }
|
||||
|
||||
/// Create a ComplexVector of size @a size_ using MemoryType @a mt.
|
||||
ComplexVector(int size_, MemoryType mt)
|
||||
: data(size_, mt), size(size_) { }
|
||||
|
||||
/// @brief Create a ComplexVector of size @a size_ using host
|
||||
/// MemoryType @a h_mt and device MemoryType @a d_mt.
|
||||
ComplexVector(int size_, MemoryType h_mt, MemoryType d_mt)
|
||||
: data(size_, h_mt, d_mt), size(size_) { }
|
||||
|
||||
/// Create a vector from a statically sized C-style array of convertible type
|
||||
template <typename CT, int N>
|
||||
explicit ComplexVector(const CT (&values)[N]) : ComplexVector(N)
|
||||
{ std::copy(values, values + N, begin()); }
|
||||
|
||||
/// Create a vector using a braced initializer list
|
||||
template <typename CT, typename std::enable_if<
|
||||
std::is_convertible<CT,complex_t >::value,bool>::type = true>
|
||||
explicit ComplexVector(std::initializer_list<CT> values) : ComplexVector(
|
||||
values.size())
|
||||
{ std::copy(values.begin(), values.end(), begin()); }
|
||||
|
||||
/// Enable execution of Vector operations using the mfem::Device.
|
||||
/// The default is to use Backend::CPU (serial execution on each MPI rank),
|
||||
/// regardless of the mfem::Device configuration.
|
||||
///
|
||||
/// When appropriate, MFEM functions and class methods will enable the use
|
||||
/// of the mfem::Device for their Vector parameters.
|
||||
///
|
||||
/// Some derived classes, e.g. GridFunction, enable the use of the
|
||||
/// mfem::Device by default.
|
||||
virtual void UseDevice(bool use_dev) const { data.UseDevice(use_dev); }
|
||||
|
||||
/// Return the device flag of the Memory object used by the Vector
|
||||
virtual bool UseDevice() const { return data.UseDevice(); }
|
||||
|
||||
/// @brief Resize the vector to size @a s.
|
||||
/// If the new size is less than or equal to Capacity() then the internal
|
||||
/// data array remains the same. Otherwise, the old array is deleted, if
|
||||
/// owned, and a new array of size @a s is allocated without copying the
|
||||
/// previous content of the ComplexVector.
|
||||
/// @warning In the second case above (new size greater than current one),
|
||||
/// the vector will allocate new data array, even if it did not own the
|
||||
/// original data! Also, new entries are not initialized!
|
||||
void SetSize(int s);
|
||||
|
||||
/// Resize the vector to size @a s using MemoryType @a mt.
|
||||
void SetSize(int s, MemoryType mt);
|
||||
|
||||
/// Resize the vector to size @a s using the MemoryType of @a v.
|
||||
void SetSize(int s, const ComplexVector &v)
|
||||
{ SetSize(s, v.GetMemory().GetMemoryType()); }
|
||||
|
||||
/// Resize the vector to size @a s using the MemoryType of @a v.
|
||||
void SetSize(int s, const Vector &v)
|
||||
{ SetSize(s, v.GetMemory().GetMemoryType()); }
|
||||
|
||||
/// Set the Vector data.
|
||||
/// @warning This method should be called only when OwnsData() is false.
|
||||
void SetData(complex_t *d)
|
||||
{ data.Wrap(d, data.Capacity(), false); }
|
||||
|
||||
/// Set the Vector data and size.
|
||||
/// The Vector does not assume ownership of the new data. The new size is
|
||||
/// also used as the new Capacity().
|
||||
/// @warning This method should be called only when OwnsData() is false.
|
||||
/// @sa NewDataAndSize().
|
||||
void SetDataAndSize(complex_t *d, int s)
|
||||
{ data.Wrap(d, s, false); size = s; }
|
||||
|
||||
/// Set the Vector data and size, deleting the old data, if owned.
|
||||
/// The Vector does not assume ownership of the new data. The new size is
|
||||
/// also used as the new Capacity().
|
||||
/// @sa SetDataAndSize().
|
||||
void NewDataAndSize(complex_t *d, int s)
|
||||
{
|
||||
data.Delete();
|
||||
SetDataAndSize(d, s);
|
||||
}
|
||||
|
||||
/// Reset the Vector to use the given external Memory @a mem and size @a s.
|
||||
/// If @a own_mem is false, the Vector will not own any of the pointers of
|
||||
/// @a mem.
|
||||
///
|
||||
/// Note that when @a own_mem is true, the @a mem object can be destroyed
|
||||
/// immediately by the caller but `mem.Delete()` should NOT be called since
|
||||
/// the Vector object takes ownership of all pointers owned by @a mem.
|
||||
///
|
||||
/// @sa NewDataAndSize().
|
||||
inline void NewMemoryAndSize(const Memory<complex_t > &mem,
|
||||
int s, bool own_mem);
|
||||
|
||||
/// Reset the Vector to be a reference to a sub-vector of @a base.
|
||||
inline void MakeRef(ComplexVector &base, int offset, int size);
|
||||
|
||||
/// @brief Reset the Vector to be a reference to a sub-vector of @a base
|
||||
/// without changing its current size.
|
||||
inline void MakeRef(ComplexVector &base, int offset);
|
||||
|
||||
/// Set the Vector data (host pointer) ownership flag.
|
||||
void MakeDataOwner() const { data.SetHostPtrOwner(true); }
|
||||
|
||||
/// Destroy a vector
|
||||
void Destroy();
|
||||
|
||||
/// @brief Delete the device pointer, if owned. If @a copy_to_host is true
|
||||
/// and the data is valid only on device, move it to host before deleting.
|
||||
/// Invalidates the device memory.
|
||||
void DeleteDevice(bool copy_to_host = true)
|
||||
{ data.DeleteDevice(copy_to_host); }
|
||||
|
||||
/// Returns the size of the vector.
|
||||
inline int Size() const { return size; }
|
||||
|
||||
/// Return the size of the currently allocated data array.
|
||||
/// It is always true that Capacity() >= Size().
|
||||
inline int Capacity() const { return data.Capacity(); }
|
||||
|
||||
/// Return a pointer to the beginning of the ComplexVector data.
|
||||
/// @warning This method should be used with caution as it gives write access
|
||||
/// to the data of const-qualified ComplexVector%s.
|
||||
inline complex_t *GetData() const
|
||||
{ return const_cast<complex_t*>((const complex_t*)data); }
|
||||
|
||||
/// STL-like begin.
|
||||
inline complex_t *begin() { return data; }
|
||||
|
||||
/// STL-like end.
|
||||
inline complex_t *end() { return data + size; }
|
||||
|
||||
/// STL-like begin (const version).
|
||||
inline const complex_t *begin() const { return data; }
|
||||
|
||||
/// STL-like end (const version).
|
||||
inline const complex_t *end() const { return data + size; }
|
||||
|
||||
/// Return a reference to the Memory object used by the Vector.
|
||||
Memory<complex_t > &GetMemory() { return data; }
|
||||
|
||||
/// @brief Return a reference to the Memory object used by the
|
||||
/// ComplexVector, const version.
|
||||
const Memory<complex_t > &GetMemory() const { return data; }
|
||||
|
||||
/// Update the memory location of the vector to match @a v.
|
||||
void SyncMemory(const ComplexVector &v) const
|
||||
{ GetMemory().Sync(v.GetMemory()); }
|
||||
|
||||
/// Update the alias memory location of the vector to match @a v.
|
||||
void SyncAliasMemory(const ComplexVector &v) const
|
||||
{ GetMemory().SyncAlias(v.GetMemory(),Size()); }
|
||||
|
||||
/// Read the Vector data (host pointer) ownership flag.
|
||||
inline bool OwnsData() const { return data.OwnsHostPtr(); }
|
||||
|
||||
/// Changes the ownership of the data; after the call the Vector is empty
|
||||
inline void StealData(complex_t **p)
|
||||
{ *p = data; data.Reset(); size = 0; }
|
||||
|
||||
/// Changes the ownership of the data; after the call the Vector is empty
|
||||
inline complex_t *StealData()
|
||||
{ complex_t *p; StealData(&p); return p; }
|
||||
|
||||
/// Access Vector entries. Index i = 0 .. size-1.
|
||||
complex_t &Elem(int i);
|
||||
|
||||
/// Read only access to Vector entries. Index i = 0 .. size-1.
|
||||
const complex_t &Elem(int i) const;
|
||||
|
||||
/// Access Vector entries using () for 0-based indexing.
|
||||
/// @note If MFEM_DEBUG is enabled, bounds checking is performed.
|
||||
inline complex_t &operator()(int i);
|
||||
|
||||
/// Read only access to Vector entries using () for 0-based indexing.
|
||||
/// @note If MFEM_DEBUG is enabled, bounds checking is performed.
|
||||
inline const complex_t &operator()(int i) const;
|
||||
|
||||
/// Access Vector entries using [] for 0-based indexing.
|
||||
/// @note If MFEM_DEBUG is enabled, bounds checking is performed.
|
||||
inline complex_t &operator[](int i) { return (*this)(i); }
|
||||
|
||||
/// Read only access to Vector entries using [] for 0-based indexing.
|
||||
/// @note If MFEM_DEBUG is enabled, bounds checking is performed.
|
||||
inline const complex_t &operator[](int i) const
|
||||
{ return (*this)(i); }
|
||||
|
||||
/// Dot product with a `complex<double> *` array.
|
||||
/// @note No complex conjugate is performed
|
||||
complex_t operator*(const complex_t *v) const;
|
||||
complex_t operator*(const real_t *v) const;
|
||||
|
||||
/// Return the inner-product.
|
||||
/// @note No complex conjugate is performed
|
||||
complex_t operator*(const ComplexVector &v) const;
|
||||
complex_t operator*(const Vector &v) const;
|
||||
|
||||
/// Copy Size() entries from @a v.
|
||||
ComplexVector &operator=(const complex_t *v);
|
||||
ComplexVector &operator=(const real_t *v);
|
||||
|
||||
/// Copy assignment.
|
||||
/// @note Defining this method overwrites the implicitly defined copy
|
||||
/// assignment operator.
|
||||
ComplexVector &operator=(const ComplexVector &v);
|
||||
ComplexVector &operator=(const Vector &v);
|
||||
|
||||
/// Move assignment
|
||||
ComplexVector &operator=(ComplexVector&& v);
|
||||
|
||||
/// Redefine '=' for vector = constant.
|
||||
ComplexVector &operator=(complex_t value);
|
||||
ComplexVector &operator=(real_t value);
|
||||
|
||||
/// Scale vector by a constant
|
||||
ComplexVector &operator*=(complex_t c);
|
||||
ComplexVector &operator*=(real_t c);
|
||||
|
||||
/// Component-wise scaling: (*this)(i) *= v(i)
|
||||
ComplexVector &operator*=(const ComplexVector &v);
|
||||
ComplexVector &operator*=(const Vector &v);
|
||||
|
||||
/// Divide vector by a consant
|
||||
ComplexVector &operator/=(complex_t c);
|
||||
ComplexVector &operator/=(real_t c);
|
||||
|
||||
/// Component-wise division: (*this)(i) /= v(i)
|
||||
ComplexVector &operator/=(const ComplexVector &v);
|
||||
ComplexVector &operator/=(const Vector &v);
|
||||
|
||||
/// Subtract a constant from this vector
|
||||
ComplexVector &operator-=(complex_t c);
|
||||
ComplexVector &operator-=(real_t c);
|
||||
|
||||
/// Subtract a vector from this vector
|
||||
ComplexVector &operator-=(const ComplexVector &v);
|
||||
ComplexVector &operator-=(const Vector &v);
|
||||
|
||||
/// Add a constant to this vector
|
||||
ComplexVector &operator+=(complex_t c);
|
||||
ComplexVector &operator+=(real_t c);
|
||||
|
||||
/// Add a vector to this vector
|
||||
ComplexVector &operator+=(const ComplexVector &v);
|
||||
ComplexVector &operator+=(const Vector &v);
|
||||
|
||||
/// (*this) = x + i * y
|
||||
ComplexVector &Set(const Vector &x, const Vector &y);
|
||||
|
||||
/// Swap the contents of two Vectors
|
||||
inline void Swap(ComplexVector &other);
|
||||
|
||||
/// Return a reference to the real part of this vector
|
||||
const Vector &real() const;
|
||||
|
||||
/// Return a reference to the imaginary part of this vector
|
||||
const Vector &imag() const;
|
||||
|
||||
/// Destroys vector.
|
||||
virtual ~ComplexVector();
|
||||
|
||||
/// Shortcut for mfem::Read(vec.GetMemory(), vec.Size(), on_dev).
|
||||
virtual const complex_t *Read(bool on_dev = true) const
|
||||
{ return mfem::Read(data, size, on_dev); }
|
||||
|
||||
/// Shortcut for mfem::Read(vec.GetMemory(), vec.Size(), false).
|
||||
virtual const complex_t *HostRead() const
|
||||
{ return mfem::Read(data, size, false); }
|
||||
|
||||
/// Shortcut for mfem::Write(vec.GetMemory(), vec.Size(), on_dev).
|
||||
virtual complex_t *Write(bool on_dev = true)
|
||||
{ return mfem::Write(data, size, on_dev); }
|
||||
|
||||
/// Shortcut for mfem::Write(vec.GetMemory(), vec.Size(), false).
|
||||
virtual complex_t *HostWrite()
|
||||
{ return mfem::Write(data, size, false); }
|
||||
|
||||
/// Shortcut for mfem::ReadWrite(vec.GetMemory(), vec.Size(), on_dev).
|
||||
virtual complex_t *ReadWrite(bool on_dev = true)
|
||||
{ return mfem::ReadWrite(data, size, on_dev); }
|
||||
|
||||
/// Shortcut for mfem::ReadWrite(vec.GetMemory(), vec.Size(), false).
|
||||
virtual complex_t *HostReadWrite()
|
||||
{ return mfem::ReadWrite(data, size, false); }
|
||||
};
|
||||
|
||||
inline ComplexVector::ComplexVector(int s)
|
||||
{
|
||||
MFEM_ASSERT(s>=0,"Unexpected negative size.");
|
||||
size = s;
|
||||
if (s > 0)
|
||||
{
|
||||
data.New(s);
|
||||
}
|
||||
}
|
||||
|
||||
inline void ComplexVector::SetSize(int s)
|
||||
{
|
||||
if (s == size)
|
||||
{
|
||||
return;
|
||||
}
|
||||
if (s <= data.Capacity())
|
||||
{
|
||||
size = s;
|
||||
return;
|
||||
}
|
||||
// preserve a valid MemoryType and device flag
|
||||
const MemoryType mt = data.GetMemoryType();
|
||||
const bool use_dev = data.UseDevice();
|
||||
data.Delete();
|
||||
size = s;
|
||||
data.New(s, mt);
|
||||
data.UseDevice(use_dev);
|
||||
}
|
||||
|
||||
inline void ComplexVector::SetSize(int s, MemoryType mt)
|
||||
{
|
||||
if (mt == data.GetMemoryType())
|
||||
{
|
||||
if (s == size)
|
||||
{
|
||||
return;
|
||||
}
|
||||
if (s <= data.Capacity())
|
||||
{
|
||||
size = s;
|
||||
return;
|
||||
}
|
||||
}
|
||||
const bool use_dev = data.UseDevice();
|
||||
data.Delete();
|
||||
if (s > 0)
|
||||
{
|
||||
data.New(s, mt);
|
||||
size = s;
|
||||
}
|
||||
else
|
||||
{
|
||||
data.Reset();
|
||||
size = 0;
|
||||
}
|
||||
data.UseDevice(use_dev);
|
||||
}
|
||||
|
||||
inline void ComplexVector::NewMemoryAndSize(
|
||||
const Memory<complex_t > &mem,
|
||||
int s,
|
||||
bool own_mem)
|
||||
{
|
||||
data.Delete();
|
||||
size = s;
|
||||
if (own_mem)
|
||||
{
|
||||
data = mem;
|
||||
}
|
||||
else
|
||||
{
|
||||
data.MakeAlias(mem, 0, s);
|
||||
}
|
||||
}
|
||||
|
||||
inline void ComplexVector::MakeRef(ComplexVector &base, int offset, int s)
|
||||
{
|
||||
data.Delete();
|
||||
size = s;
|
||||
data.MakeAlias(base.GetMemory(), offset, s);
|
||||
}
|
||||
|
||||
inline void ComplexVector::MakeRef(ComplexVector &base, int offset)
|
||||
{
|
||||
data.Delete();
|
||||
data.MakeAlias(base.GetMemory(), offset, size);
|
||||
}
|
||||
|
||||
inline void ComplexVector::Destroy()
|
||||
{
|
||||
const bool use_dev = data.UseDevice();
|
||||
data.Delete();
|
||||
size = 0;
|
||||
data.Reset();
|
||||
data.UseDevice(use_dev);
|
||||
}
|
||||
|
||||
inline complex_t &ComplexVector::operator()(int i)
|
||||
{
|
||||
MFEM_ASSERT(data && i >= 0 && i < size,
|
||||
"index [" << i << "] is out of range [0," << size << ")");
|
||||
|
||||
return data[i];
|
||||
}
|
||||
|
||||
inline const complex_t &ComplexVector::operator()(int i) const
|
||||
{
|
||||
MFEM_ASSERT(data && i >= 0 && i < size,
|
||||
"index [" << i << "] is out of range [0," << size << ")");
|
||||
|
||||
return data[i];
|
||||
}
|
||||
|
||||
inline void ComplexVector::Swap(ComplexVector &other)
|
||||
{
|
||||
mfem::Swap(data, other.data);
|
||||
mfem::Swap(size, other.size);
|
||||
}
|
||||
|
||||
/// Specialization of the template function Swap<> for class ComplexVector
|
||||
template<> inline void Swap<ComplexVector>(ComplexVector &a, ComplexVector &b)
|
||||
{
|
||||
a.Swap(b);
|
||||
}
|
||||
|
||||
inline ComplexVector::~ComplexVector()
|
||||
{
|
||||
data.Delete();
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
+53
-28
@@ -124,24 +124,21 @@ const real_t &DenseMatrix::Elem(int i, int j) const
|
||||
|
||||
void DenseMatrix::Mult(const real_t *x, real_t *y) const
|
||||
{
|
||||
HostRead();
|
||||
kernels::Mult(height, width, Data(), x, y);
|
||||
kernels::Mult(height, width, HostRead(), x, y);
|
||||
}
|
||||
|
||||
void DenseMatrix::Mult(const real_t *x, Vector &y) const
|
||||
{
|
||||
MFEM_ASSERT(height == y.Size(), "incompatible dimensions");
|
||||
|
||||
y.HostReadWrite();
|
||||
Mult(x, y.GetData());
|
||||
Mult(x, y.HostWrite());
|
||||
}
|
||||
|
||||
void DenseMatrix::Mult(const Vector &x, real_t *y) const
|
||||
{
|
||||
MFEM_ASSERT(width == x.Size(), "incompatible dimensions");
|
||||
|
||||
x.HostRead();
|
||||
Mult(x.GetData(), y);
|
||||
Mult(x.HostRead(), y);
|
||||
}
|
||||
|
||||
void DenseMatrix::Mult(const Vector &x, Vector &y) const
|
||||
@@ -149,9 +146,15 @@ void DenseMatrix::Mult(const Vector &x, Vector &y) const
|
||||
MFEM_ASSERT(height == y.Size() && width == x.Size(),
|
||||
"incompatible dimensions");
|
||||
|
||||
x.HostRead();
|
||||
y.HostReadWrite();
|
||||
Mult(x.GetData(), y.GetData());
|
||||
Mult(x.HostRead(), y.HostWrite());
|
||||
}
|
||||
|
||||
void DenseMatrix::AbsMult(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_ASSERT(height == y.Size() && width == x.Size(),
|
||||
"incompatible dimensions");
|
||||
|
||||
kernels::AbsMult(height, width, HostRead(), x.HostRead(), y.HostWrite());
|
||||
}
|
||||
|
||||
real_t DenseMatrix::operator *(const DenseMatrix &m) const
|
||||
@@ -171,34 +174,21 @@ real_t DenseMatrix::operator *(const DenseMatrix &m) const
|
||||
|
||||
void DenseMatrix::MultTranspose(const real_t *x, real_t *y) const
|
||||
{
|
||||
HostRead();
|
||||
real_t *d_col = Data();
|
||||
for (int col = 0; col < width; col++)
|
||||
{
|
||||
real_t y_col = 0.0;
|
||||
for (int row = 0; row < height; row++)
|
||||
{
|
||||
y_col += x[row]*d_col[row];
|
||||
}
|
||||
y[col] = y_col;
|
||||
d_col += height;
|
||||
}
|
||||
kernels::MultTranspose(height, width, HostRead(), x, y);
|
||||
}
|
||||
|
||||
void DenseMatrix::MultTranspose(const real_t *x, Vector &y) const
|
||||
{
|
||||
MFEM_ASSERT(width == y.Size(), "incompatible dimensions");
|
||||
|
||||
y.HostReadWrite();
|
||||
MultTranspose(x, y.GetData());
|
||||
MultTranspose(x, y.HostWrite());
|
||||
}
|
||||
|
||||
void DenseMatrix::MultTranspose(const Vector &x, real_t *y) const
|
||||
{
|
||||
MFEM_ASSERT(height == x.Size(), "incompatible dimensions");
|
||||
|
||||
x.HostRead();
|
||||
MultTranspose(x.GetData(), y);
|
||||
MultTranspose(x.HostRead(), y);
|
||||
}
|
||||
|
||||
void DenseMatrix::MultTranspose(const Vector &x, Vector &y) const
|
||||
@@ -206,9 +196,16 @@ void DenseMatrix::MultTranspose(const Vector &x, Vector &y) const
|
||||
MFEM_ASSERT(height == x.Size() && width == y.Size(),
|
||||
"incompatible dimensions");
|
||||
|
||||
x.HostRead();
|
||||
y.HostReadWrite();
|
||||
MultTranspose(x.GetData(), y.GetData());
|
||||
MultTranspose(x.HostRead(), y.HostWrite());
|
||||
}
|
||||
|
||||
void DenseMatrix::AbsMultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_ASSERT(height == x.Size() && width == y.Size(),
|
||||
"incompatible dimensions");
|
||||
|
||||
kernels::AbsMultTranspose(height, width, HostRead(),
|
||||
x.HostRead(), y.HostWrite());
|
||||
}
|
||||
|
||||
void DenseMatrix::AddMult(const Vector &x, Vector &y, const real_t a) const
|
||||
@@ -4408,4 +4405,32 @@ void BatchLUSolve(const DenseTensor &Mlu, const Array<int> &P, Vector &X)
|
||||
BatchedLinAlg::LUSolve(Mlu, P, X);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
void BandedSolve(int KL, int KU, DenseMatrix &AB, DenseMatrix &B,
|
||||
Array<int> &ipiv)
|
||||
{
|
||||
int LDAB = (2*KL) + KU + 1;
|
||||
int N = AB.NumCols();
|
||||
int NRHS = B.NumCols();
|
||||
int info;
|
||||
ipiv.SetSize(N);
|
||||
MFEM_LAPACK_PREFIX(gbsv_)(&N, &KL, &KU, &NRHS, AB.GetData(), &LDAB,
|
||||
ipiv.GetData(), B.GetData(), &N, &info);
|
||||
MFEM_ASSERT(info == 0, "BandedSolve failed in LAPACK");
|
||||
}
|
||||
|
||||
void BandedFactorizedSolve(int KL, int KU, DenseMatrix &AB, DenseMatrix &B,
|
||||
bool transpose, Array<int> &ipiv)
|
||||
{
|
||||
int LDAB = (2*KL) + KU + 1;
|
||||
int N = AB.NumCols();
|
||||
int NRHS = B.NumCols();
|
||||
char trans = transpose ? 'T' : 'N';
|
||||
int info;
|
||||
MFEM_LAPACK_PREFIX(gbtrs_)(&trans, &N, &KL, &KU, &NRHS, AB.GetData(), &LDAB,
|
||||
ipiv.GetData(), B.GetData(), &N, &info);
|
||||
MFEM_ASSERT(info == 0, "BandedFactorizedSolve failed in LAPACK");
|
||||
}
|
||||
#endif
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -24,6 +24,7 @@ class DenseMatrix : public Matrix
|
||||
{
|
||||
friend class DenseTensor;
|
||||
friend class DenseMatrixInverse;
|
||||
friend class ComplexTypeDenseMatrix;
|
||||
|
||||
private:
|
||||
Memory<real_t> data;
|
||||
@@ -153,6 +154,9 @@ public:
|
||||
/// Matrix vector multiplication.
|
||||
void Mult(const Vector &x, Vector &y) const override;
|
||||
|
||||
/// Absolute-value matrix vector multiplication.
|
||||
void AbsMult(const Vector &x, Vector &y) const override;
|
||||
|
||||
/// Multiply a vector with the transpose matrix.
|
||||
void MultTranspose(const real_t *x, real_t *y) const;
|
||||
|
||||
@@ -165,6 +169,9 @@ public:
|
||||
/// Multiply a vector with the transpose matrix.
|
||||
void MultTranspose(const Vector &x, Vector &y) const override;
|
||||
|
||||
/// Multiply a vector with the absolute-value transpose matrix.
|
||||
void AbsMultTranspose(const Vector &x, Vector &y) const override;
|
||||
|
||||
using Operator::Mult;
|
||||
using Operator::MultTranspose;
|
||||
|
||||
@@ -1323,6 +1330,13 @@ void BatchLUFactor(DenseTensor &Mlu, Array<int> &P, const real_t TOL = 0.0);
|
||||
dimension m x n. */
|
||||
void BatchLUSolve(const DenseTensor &Mlu, const Array<int> &P, Vector &X);
|
||||
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
void BandedSolve(int KL, int KU, DenseMatrix &AB, DenseMatrix &B,
|
||||
Array<int> &ipiv);
|
||||
void BandedFactorizedSolve(int KL, int KU, DenseMatrix &AB, DenseMatrix &B,
|
||||
bool transpose, Array<int> &ipiv);
|
||||
#endif
|
||||
|
||||
// Inline methods
|
||||
|
||||
inline real_t &DenseMatrix::operator()(int i, int j)
|
||||
|
||||
@@ -2574,6 +2574,18 @@ void HypreParMatrix::EliminateBC(const Array<int> &ess_dofs,
|
||||
#if defined(HYPRE_USING_GPU)
|
||||
if (HypreUsingGPU())
|
||||
{
|
||||
#if defined(HYPRE_WITH_GPU_AWARE_MPI) || defined(HYPRE_USING_GPU_AWARE_MPI)
|
||||
// hypre_GetGpuAwareMPI() was introduced in v2.31.0, however, its value
|
||||
// is not checked in hypre_ParCSRCommHandleCreate_v2() before v2.33.0,
|
||||
// instead only HYPRE_WITH_GPU_AWARE_MPI is checked.
|
||||
#if MFEM_HYPRE_VERSION >= 23300
|
||||
if (hypre_GetGpuAwareMPI())
|
||||
#endif
|
||||
{
|
||||
// ensure int_buf_data has been computed before sending it
|
||||
MFEM_STREAM_SYNC;
|
||||
}
|
||||
#endif
|
||||
// Try to use device-aware MPI for the communication if available
|
||||
comm_handle = hypre_ParCSRCommHandleCreate_v2(
|
||||
11, comm_pkg, HYPRE_MEMORY_DEVICE, int_buf_data,
|
||||
|
||||
@@ -778,10 +778,19 @@ public:
|
||||
of the matrix A. */
|
||||
void AbsMult(real_t a, const Vector &x, real_t b, Vector &y) const;
|
||||
|
||||
/// @brief Computes y = |A| * x, using entry-wise absolute values of the matrix A.
|
||||
void AbsMult(const Vector &x, Vector &y) const override
|
||||
{ AbsMult(1.0, x, 0.0, y); }
|
||||
|
||||
/** @brief Computes y = a * |At| * x + b * y, using entry-wise absolute
|
||||
values of the transpose of the matrix A. */
|
||||
void AbsMultTranspose(real_t a, const Vector &x, real_t b, Vector &y) const;
|
||||
|
||||
/** @brief Computes y = |At| * x, using entry-wise absolute values of the
|
||||
matrix A. */
|
||||
void AbsMultTranspose(const Vector &x, Vector &y) const override
|
||||
{ AbsMultTranspose(1.0, x, 0.0, y); }
|
||||
|
||||
/** @brief The "Boolean" analog of y = alpha * A * x + beta * y, where
|
||||
elements in the sparsity pattern of the matrix are treated as "true". */
|
||||
void BooleanMult(int alpha, const int *x, int beta, int *y)
|
||||
|
||||
@@ -188,6 +188,40 @@ void Mult(const int height, const int width, const TA *data, const TX *x, TY *y)
|
||||
}
|
||||
}
|
||||
|
||||
/** @brief Absolute-value matrix vector multiplication: y = |A| x, where the
|
||||
matrix A is of size @a height x @a width with given @a data, while @a x and
|
||||
@a y specify the data of the input and output vectors. */
|
||||
template<typename TA, typename TX, typename TY>
|
||||
MFEM_HOST_DEVICE inline
|
||||
void AbsMult(const int height, const int width, const TA *data,
|
||||
const TX *x, TY *y)
|
||||
{
|
||||
if (width == 0)
|
||||
{
|
||||
for (int row = 0; row < height; row++)
|
||||
{
|
||||
y[row] = 0.0;
|
||||
}
|
||||
return;
|
||||
}
|
||||
const TA *d_col = data;
|
||||
TX x_col = x[0];
|
||||
for (int row = 0; row < height; row++)
|
||||
{
|
||||
y[row] = x_col*std::fabs(d_col[row]);
|
||||
}
|
||||
d_col += height;
|
||||
for (int col = 1; col < width; col++)
|
||||
{
|
||||
x_col = x[col];
|
||||
for (int row = 0; row < height; row++)
|
||||
{
|
||||
y[row] += x_col*std::fabs(d_col[row]);
|
||||
}
|
||||
d_col += height;
|
||||
}
|
||||
}
|
||||
|
||||
/** @brief Matrix transpose vector multiplication: y = At x, where the matrix A
|
||||
is of size @a height x @a width with given @a data, while @a x and @a y
|
||||
specify the data of the input and output vectors. */
|
||||
@@ -217,6 +251,35 @@ void MultTranspose(const int height, const int width, const TA *data,
|
||||
}
|
||||
}
|
||||
|
||||
/** @brief Absolute-value matrix transpose vector multiplication: y = |At| x,
|
||||
where the matrix A is of size @a height x @a width with given @a data, while
|
||||
@a x and @a y specify the data of the input and output vectors. */
|
||||
template<typename TA, typename TX, typename TY>
|
||||
MFEM_HOST_DEVICE inline
|
||||
void AbsMultTranspose(const int height, const int width, const TA *data,
|
||||
const TX *x, TY *y)
|
||||
{
|
||||
if (height == 0)
|
||||
{
|
||||
for (int row = 0; row < width; row++)
|
||||
{
|
||||
y[row] = 0.0;
|
||||
}
|
||||
return;
|
||||
}
|
||||
TY *y_off = y;
|
||||
for (int i = 0; i < width; ++i)
|
||||
{
|
||||
TY val = 0.0;
|
||||
for (int j = 0; j < height; ++j)
|
||||
{
|
||||
val += x[j] * std::fabs(data[i * height + j]);
|
||||
}
|
||||
*y_off = val;
|
||||
y_off++;
|
||||
}
|
||||
}
|
||||
|
||||
/// Symmetrize a square matrix with given @a size and @a data: A -> (A+A^T)/2.
|
||||
template<typename T>
|
||||
MFEM_HOST_DEVICE inline
|
||||
|
||||
@@ -42,6 +42,13 @@ extern "C" void
|
||||
MFEM_LAPACK_PREFIX(getri_)(int *N, real_t *A, int *LDA, int *IPIV, real_t *WORK,
|
||||
int *LWORK, int *INFO);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(gbsv_)(int *, int *, int *, int *, real_t *, int *, int *,
|
||||
real_t *, int *, int *);
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(gbtrs_)(char *, int *, int *, int *, int *, real_t *, int *,
|
||||
int *, real_t *, int *, int *);
|
||||
|
||||
extern "C" void
|
||||
MFEM_LAPACK_PREFIX(syevr_)(char *JOBZ, char *RANGE, char *UPLO, int *N,
|
||||
real_t *A, int *LDA, real_t *VL, real_t *VU, int *IL,
|
||||
int *IU, real_t *ABSTOL, int *M, real_t *W,
|
||||
|
||||
@@ -645,18 +645,92 @@ void ConstrainedOperator::ConstrainedMult(const Vector &x, Vector &y,
|
||||
}
|
||||
}
|
||||
|
||||
void ConstrainedOperator::ConstrainedAbsMult(const Vector &x, Vector &y,
|
||||
const bool transpose) const
|
||||
{
|
||||
const int csz = constraint_list.Size();
|
||||
if (csz == 0)
|
||||
{
|
||||
if (transpose)
|
||||
{
|
||||
A->AbsMultTranspose(x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
A->AbsMult(x, y);
|
||||
}
|
||||
return;
|
||||
}
|
||||
|
||||
z = x;
|
||||
|
||||
auto idx = constraint_list.Read();
|
||||
// Use read+write access - we are modifying sub-vector of z
|
||||
auto d_z = z.ReadWrite();
|
||||
mfem::forall(csz, [=] MFEM_HOST_DEVICE (int i) { d_z[idx[i]] = 0.0; });
|
||||
|
||||
if (transpose)
|
||||
{
|
||||
A->AbsMultTranspose(z, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
A->AbsMult(z, y);
|
||||
}
|
||||
|
||||
auto d_x = x.Read();
|
||||
// Use read+write access - we are modifying sub-vector of y
|
||||
auto d_y = y.ReadWrite();
|
||||
switch (diag_policy)
|
||||
{
|
||||
case DIAG_ONE:
|
||||
mfem::forall(csz, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
const int id = idx[i];
|
||||
d_y[id] = d_x[id];
|
||||
});
|
||||
break;
|
||||
case DIAG_ZERO:
|
||||
mfem::forall(csz, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
const int id = idx[i];
|
||||
d_y[id] = 0.0;
|
||||
});
|
||||
break;
|
||||
case DIAG_KEEP:
|
||||
// Needs action of the operator diagonal on vector
|
||||
mfem_error("ConstrainedOperator::AbsMult #1");
|
||||
break;
|
||||
default:
|
||||
mfem_error("ConstrainedOperator::AbsMult #2");
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
void ConstrainedOperator::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
constexpr bool transpose = false;
|
||||
ConstrainedMult(x, y, transpose);
|
||||
}
|
||||
|
||||
void ConstrainedOperator::AbsMult(const Vector &x, Vector &y) const
|
||||
{
|
||||
constexpr bool transpose = false;
|
||||
ConstrainedAbsMult(x, y, transpose);
|
||||
}
|
||||
|
||||
void ConstrainedOperator::MultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
constexpr bool transpose = true;
|
||||
ConstrainedMult(x, y, transpose);
|
||||
}
|
||||
|
||||
void ConstrainedOperator::AbsMultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
constexpr bool transpose = true;
|
||||
ConstrainedAbsMult(x, y, transpose);
|
||||
}
|
||||
|
||||
void ConstrainedOperator::AddMult(const Vector &x, Vector &y,
|
||||
const real_t a) const
|
||||
{
|
||||
|
||||
+38
-6
@@ -88,10 +88,22 @@ public:
|
||||
/// Operator application: `y=A(x)`.
|
||||
virtual void Mult(const Vector &x, Vector &y) const = 0;
|
||||
|
||||
/** @brief Action of the absolute-value operator: `y=|A|(x)`. The default
|
||||
behavior in class Operator is to generate an error. If the Operator is a
|
||||
composition of several operators, the composition unfold into a product
|
||||
of absolute-value operators too. */
|
||||
virtual void AbsMult(const Vector &x, Vector &y) const
|
||||
{ MFEM_ABORT("Operator::AbsMult() is not overridden!"); }
|
||||
|
||||
/** @brief Action of the transpose operator: `y=A^t(x)`. The default behavior
|
||||
in class Operator is to generate an error. */
|
||||
virtual void MultTranspose(const Vector &x, Vector &y) const
|
||||
{ mfem_error("Operator::MultTranspose() is not overridden!"); }
|
||||
{ MFEM_ABORT("Operator::MultTranspose() is not overridden!"); }
|
||||
|
||||
/** @brief Action of the transpose absolute-value operator: `y=|A|^t(x)`.
|
||||
The default behavior in class Operator is to generate an error. */
|
||||
virtual void AbsMultTranspose(const Vector &x, Vector &y) const
|
||||
{ MFEM_ABORT("Operator::AbsMultTranspose() is not overridden!"); }
|
||||
|
||||
/// Operator application: `y+=A(x)` (default) or `y+=a*A(x)`.
|
||||
virtual void AddMult(const Vector &x, Vector &y, const real_t a = 1.0) const;
|
||||
@@ -121,7 +133,7 @@ public:
|
||||
behavior in class Operator is to generate an error. */
|
||||
virtual Operator &GetGradient(const Vector &x) const
|
||||
{
|
||||
mfem_error("Operator::GetGradient() is not overridden!");
|
||||
MFEM_ABORT("Operator::GetGradient() is not overridden!");
|
||||
return const_cast<Operator &>(*this);
|
||||
}
|
||||
|
||||
@@ -691,7 +703,7 @@ public:
|
||||
const Vector &xB, const Vector &fxB,
|
||||
int jokB, int *jcurB, real_t gammaB)
|
||||
{
|
||||
mfem_error("TimeDependentAdjointOperator::SUNImplicitSetupB() is not "
|
||||
MFEM_ABORT("TimeDependentAdjointOperator::SUNImplicitSetupB() is not "
|
||||
"overridden!");
|
||||
return (-1);
|
||||
}
|
||||
@@ -709,7 +721,7 @@ public:
|
||||
see the SUNDIALS User Guides. */
|
||||
virtual int SUNImplicitSolveB(Vector &x, const Vector &b, real_t tol)
|
||||
{
|
||||
mfem_error("TimeDependentAdjointOperator::SUNImplicitSolveB() is not "
|
||||
MFEM_ABORT("TimeDependentAdjointOperator::SUNImplicitSolveB() is not "
|
||||
"overridden!");
|
||||
return (-1);
|
||||
}
|
||||
@@ -930,6 +942,10 @@ public:
|
||||
void Mult(const Vector & x, Vector & y) const override
|
||||
{ P.Mult(x, Px); A.Mult(Px, APx); Rt.MultTranspose(APx, y); }
|
||||
|
||||
/// Operator-wise absolute-value application.
|
||||
void AbsMult(const Vector & x, Vector & y) const override
|
||||
{ P.AbsMult(x, Px); A.AbsMult(Px, APx); Rt.AbsMultTranspose(APx, y); }
|
||||
|
||||
/// Approximate diagonal of the RAP Operator.
|
||||
/** Returns the diagonal of A, as returned by its AssembleDiagonal method,
|
||||
multiplied be P^T.
|
||||
@@ -950,6 +966,14 @@ public:
|
||||
/// Application of the transpose.
|
||||
void MultTranspose(const Vector & x, Vector & y) const override
|
||||
{ Rt.Mult(x, APx); A.MultTranspose(APx, Px); P.MultTranspose(Px, y); }
|
||||
|
||||
/// Operator-wise absolute-value application of the transpose
|
||||
void AbsMultTranspose(const Vector & x, Vector & y) const override
|
||||
{
|
||||
Rt.AbsMult(x, APx);
|
||||
A.AbsMultTranspose(APx, Px);
|
||||
P.AbsMultTranspose(Px, y);
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
@@ -1045,13 +1069,21 @@ public:
|
||||
|
||||
void AddMult(const Vector &x, Vector &y, const real_t a = 1.0) const override;
|
||||
|
||||
void AbsMult(const Vector &x, Vector &y) const override;
|
||||
|
||||
void MultTranspose(const Vector &x, Vector &y) const override;
|
||||
|
||||
void AbsMultTranspose(const Vector &x, Vector &y) const override;
|
||||
|
||||
/** @brief Implementation of Mult or MultTranspose.
|
||||
* TODO - Generalize to allow constraining rows and columns differently.
|
||||
*/
|
||||
TODO - Generalize to allow constraining rows and columns differently. */
|
||||
void ConstrainedMult(const Vector &x, Vector &y, const bool transpose) const;
|
||||
|
||||
/** @brief Implementation of AbsMult or AbsMultTranspose.
|
||||
TODO - Generalize to allow constraining rows and columns differently. */
|
||||
void ConstrainedAbsMult(const Vector &x, Vector &y,
|
||||
const bool transpose) const;
|
||||
|
||||
/// Destructor: destroys the unconstrained Operator, if owned.
|
||||
~ConstrainedOperator() override { if (own_A) { delete A; } }
|
||||
};
|
||||
|
||||
+8
-7
@@ -624,7 +624,7 @@ void SLISolver::Mult(const Vector &b, Vector &x) const
|
||||
}
|
||||
|
||||
r0 = std::max(nom*rel_tol, abs_tol);
|
||||
if (nom <= r0)
|
||||
if (Monitor(0, nom, r, x) || nom <= r0)
|
||||
{
|
||||
converged = true;
|
||||
final_iter = 0;
|
||||
@@ -665,18 +665,13 @@ void SLISolver::Mult(const Vector &b, Vector &x) const
|
||||
nomold = nom;
|
||||
|
||||
bool done = false;
|
||||
if (nom < r0)
|
||||
if (Monitor(i, nom, r, x) || nom < r0)
|
||||
{
|
||||
converged = true;
|
||||
final_iter = i;
|
||||
done = true;
|
||||
}
|
||||
|
||||
if (++i > max_iter)
|
||||
{
|
||||
done = true;
|
||||
}
|
||||
|
||||
if (print_options.iterations || (done && print_options.first_and_last))
|
||||
{
|
||||
mfem::out << " Iteration : " << setw(3) << right << (i-1)
|
||||
@@ -684,6 +679,11 @@ void SLISolver::Mult(const Vector &b, Vector &x) const
|
||||
<< "\tConv. rate: " << cf << '\n';
|
||||
}
|
||||
|
||||
if (++i > max_iter)
|
||||
{
|
||||
done = true;
|
||||
}
|
||||
|
||||
if (done) { break; }
|
||||
}
|
||||
|
||||
@@ -700,6 +700,7 @@ void SLISolver::Mult(const Vector &b, Vector &x) const
|
||||
}
|
||||
|
||||
final_norm = nom;
|
||||
Monitor(final_iter, final_norm, r, x, true);
|
||||
}
|
||||
|
||||
void SLI(const Operator &A, const Vector &b, Vector &x,
|
||||
|
||||
@@ -422,13 +422,13 @@ public:
|
||||
void BooleanMultTranspose(const Array<int> &x, Array<int> &y) const;
|
||||
|
||||
/// y = |A| * x, using entry-wise absolute values of matrix A
|
||||
void AbsMult(const Vector &x, Vector &y) const;
|
||||
void AbsMult(const Vector &x, Vector &y) const override;
|
||||
|
||||
/// y = |At| * x, using entry-wise absolute values of the transpose of matrix A
|
||||
/** If the matrix is modified, call ResetTranspose() and optionally
|
||||
EnsureMultTranspose() to make sure this method uses the correct updated
|
||||
transpose. */
|
||||
void AbsMultTranspose(const Vector &x, Vector &y) const;
|
||||
void AbsMultTranspose(const Vector &x, Vector &y) const override;
|
||||
|
||||
/// Compute y^t A x
|
||||
real_t InnerProduct(const Vector &x, const Vector &y) const;
|
||||
|
||||
+219
-194
@@ -11,19 +11,18 @@
|
||||
|
||||
// Implementation of data type vector
|
||||
|
||||
#include "kernels.hpp"
|
||||
#include "vector.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "../general/reducers.hpp"
|
||||
#include "../general/hash.hpp"
|
||||
#include "vector.hpp"
|
||||
|
||||
#ifdef MFEM_USE_OPENMP
|
||||
#include <omp.h>
|
||||
#endif
|
||||
|
||||
#include <iostream>
|
||||
#include <iomanip>
|
||||
#include <cmath>
|
||||
#include <ctime>
|
||||
#include <limits>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -207,7 +206,7 @@ Vector &Vector::operator=(const Vector &v)
|
||||
UseDevice(v.UseDevice());
|
||||
#else
|
||||
SetSize(v.Size());
|
||||
bool vuse = v.UseDevice();
|
||||
const bool vuse = v.UseDevice();
|
||||
const bool use_dev = UseDevice() || vuse;
|
||||
v.UseDevice(use_dev);
|
||||
// keep 'data' where it is, unless 'use_dev' is true
|
||||
@@ -249,8 +248,8 @@ Vector &Vector::operator*=(const Vector &v)
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
auto x = v.Read(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i) { y[i] *= x[i]; });
|
||||
return *this;
|
||||
}
|
||||
@@ -271,8 +270,8 @@ Vector &Vector::operator/=(const Vector &v)
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
auto x = v.Read(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i) { y[i] /= x[i]; });
|
||||
return *this;
|
||||
}
|
||||
@@ -292,8 +291,8 @@ Vector &Vector::operator-=(const Vector &v)
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
auto x = v.Read(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i) { y[i] -= x[i]; });
|
||||
return *this;
|
||||
}
|
||||
@@ -313,8 +312,8 @@ Vector &Vector::operator+=(const Vector &v)
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int N = size;
|
||||
const auto x = v.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
auto x = v.Read(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i) { y[i] += x[i]; });
|
||||
return *this;
|
||||
}
|
||||
@@ -327,8 +326,8 @@ Vector &Vector::Add(const real_t a, const Vector &Va)
|
||||
{
|
||||
const int N = size;
|
||||
const bool use_dev = UseDevice() || Va.UseDevice();
|
||||
const auto x = Va.Read(use_dev);
|
||||
auto y = ReadWrite(use_dev);
|
||||
auto x = Va.Read(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i) { y[i] += a * x[i]; });
|
||||
}
|
||||
return *this;
|
||||
@@ -340,7 +339,7 @@ Vector &Vector::Set(const real_t a, const Vector &Va)
|
||||
|
||||
const bool use_dev = UseDevice() || Va.UseDevice();
|
||||
const int N = size;
|
||||
auto x = Va.Read(use_dev);
|
||||
const auto x = Va.Read(use_dev);
|
||||
auto y = Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i) { y[i] = a * x[i]; });
|
||||
return *this;
|
||||
@@ -352,9 +351,9 @@ void Vector::SetVector(const Vector &v, int offset)
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int vs = v.Size();
|
||||
const real_t *vp = v.Read(use_dev);
|
||||
const auto vp = v.Read(use_dev);
|
||||
// Use read+write access for *this - we only modify some of its entries
|
||||
real_t *p = ReadWrite(use_dev) + offset;
|
||||
auto p = ReadWrite(use_dev) + offset;
|
||||
mfem::forall_switch(use_dev, vs, [=] MFEM_HOST_DEVICE (int i) { p[i] = vp[i]; });
|
||||
}
|
||||
|
||||
@@ -364,8 +363,8 @@ void Vector::AddSubVector(const Vector &v, int offset)
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const int vs = v.Size();
|
||||
const real_t *vp = v.Read(use_dev);
|
||||
real_t *p = ReadWrite(use_dev) + offset;
|
||||
const auto vp = v.Read(use_dev);
|
||||
auto p = ReadWrite(use_dev) + offset;
|
||||
mfem::forall_switch(use_dev, vs, [=] MFEM_HOST_DEVICE (int i) { p[i] += vp[i]; });
|
||||
}
|
||||
|
||||
@@ -385,6 +384,28 @@ void Vector::Reciprocal()
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i) { y[i] = 1.0/y[i]; });
|
||||
}
|
||||
|
||||
void Vector::Abs()
|
||||
{
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
y[i] = std::abs(y[i]);
|
||||
});
|
||||
}
|
||||
|
||||
void Vector::Pow(const real_t p)
|
||||
{
|
||||
const bool use_dev = UseDevice();
|
||||
const int N = size;
|
||||
auto y = ReadWrite(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
y[i] = std::pow(y[i], p);
|
||||
});
|
||||
}
|
||||
|
||||
void add(const Vector &v1, const Vector &v2, Vector &v)
|
||||
{
|
||||
MFEM_ASSERT(v.size == v1.size && v.size == v2.size,
|
||||
@@ -394,8 +415,8 @@ void add(const Vector &v1, const Vector &v2, Vector &v)
|
||||
const bool use_dev = v1.UseDevice() || v2.UseDevice() || v.UseDevice();
|
||||
const int N = v.size;
|
||||
// Note: get read access first, in case v is the same as v1/v2.
|
||||
auto x1 = v1.Read(use_dev);
|
||||
auto x2 = v2.Read(use_dev);
|
||||
const auto x1 = v1.Read(use_dev);
|
||||
const auto x2 = v2.Read(use_dev);
|
||||
auto y = v.Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i) { y[i] = x1[i] + x2[i]; });
|
||||
#else
|
||||
@@ -426,8 +447,8 @@ void add(const Vector &v1, real_t alpha, const Vector &v2, Vector &v)
|
||||
const bool use_dev = v1.UseDevice() || v2.UseDevice() || v.UseDevice();
|
||||
const int N = v.size;
|
||||
// Note: get read access first, in case v is the same as v1/v2.
|
||||
auto d_x = v1.Read(use_dev);
|
||||
auto d_y = v2.Read(use_dev);
|
||||
const auto d_x = v1.Read(use_dev);
|
||||
const auto d_y = v2.Read(use_dev);
|
||||
auto d_z = v.Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
@@ -465,8 +486,8 @@ void add(const real_t a, const Vector &x, const Vector &y, Vector &z)
|
||||
const bool use_dev = x.UseDevice() || y.UseDevice() || z.UseDevice();
|
||||
const int N = x.size;
|
||||
// Note: get read access first, in case z is the same as x/y.
|
||||
auto xd = x.Read(use_dev);
|
||||
auto yd = y.Read(use_dev);
|
||||
const auto xd = x.Read(use_dev);
|
||||
const auto yd = y.Read(use_dev);
|
||||
auto zd = z.Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
@@ -520,8 +541,8 @@ void add(const real_t a, const Vector &x,
|
||||
const bool use_dev = x.UseDevice() || y.UseDevice() || z.UseDevice();
|
||||
const int N = x.size;
|
||||
// Note: get read access first, in case z is the same as x/y.
|
||||
auto xd = x.Read(use_dev);
|
||||
auto yd = y.Read(use_dev);
|
||||
const auto xd = x.Read(use_dev);
|
||||
const auto yd = y.Read(use_dev);
|
||||
auto zd = z.Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
@@ -550,8 +571,8 @@ void subtract(const Vector &x, const Vector &y, Vector &z)
|
||||
const bool use_dev = x.UseDevice() || y.UseDevice() || z.UseDevice();
|
||||
const int N = x.size;
|
||||
// Note: get read access first, in case z is the same as x/y.
|
||||
auto xd = x.Read(use_dev);
|
||||
auto yd = y.Read(use_dev);
|
||||
const auto xd = x.Read(use_dev);
|
||||
const auto yd = y.Read(use_dev);
|
||||
auto zd = z.Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
@@ -589,8 +610,8 @@ void subtract(const real_t a, const Vector &x, const Vector &y, Vector &z)
|
||||
const bool use_dev = x.UseDevice() || y.UseDevice() || z.UseDevice();
|
||||
const int N = x.size;
|
||||
// Note: get read access first, in case z is the same as x/y.
|
||||
auto xd = x.Read(use_dev);
|
||||
auto yd = y.Read(use_dev);
|
||||
const auto xd = x.Read(use_dev);
|
||||
const auto yd = y.Read(use_dev);
|
||||
auto zd = z.Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
@@ -631,8 +652,8 @@ void Vector::median(const Vector &lo, const Vector &hi)
|
||||
const bool use_dev = UseDevice() || lo.UseDevice() || hi.UseDevice();
|
||||
const int N = size;
|
||||
// Note: get read access first, in case *this is the same as lo/hi.
|
||||
auto l = lo.Read(use_dev);
|
||||
auto h = hi.Read(use_dev);
|
||||
const auto l = lo.Read(use_dev);
|
||||
const auto h = hi.Read(use_dev);
|
||||
auto m = Write(use_dev);
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
@@ -652,9 +673,9 @@ void Vector::GetSubVector(const Array<int> &dofs, Vector &elemvect) const
|
||||
const int n = dofs.Size();
|
||||
elemvect.SetSize(n);
|
||||
const bool use_dev = dofs.UseDevice() || elemvect.UseDevice();
|
||||
const auto d_X = Read(use_dev);
|
||||
const auto d_dofs = dofs.Read(use_dev);
|
||||
auto d_y = elemvect.Write(use_dev);
|
||||
auto d_X = Read(use_dev);
|
||||
auto d_dofs = dofs.Read(use_dev);
|
||||
mfem::forall_switch(use_dev, n, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
const int dof_i = d_dofs[i];
|
||||
@@ -664,7 +685,7 @@ void Vector::GetSubVector(const Array<int> &dofs, Vector &elemvect) const
|
||||
|
||||
void Vector::GetSubVector(const Array<int> &dofs, real_t *elem_data) const
|
||||
{
|
||||
data.Read(MemoryClass::HOST, size);
|
||||
HostRead();
|
||||
const int n = dofs.Size();
|
||||
for (int i = 0; i < n; i++)
|
||||
{
|
||||
@@ -679,7 +700,7 @@ void Vector::SetSubVector(const Array<int> &dofs, const real_t value)
|
||||
const int n = dofs.Size();
|
||||
// Use read+write access for *this - we only modify some of its entries
|
||||
auto d_X = ReadWrite(use_dev);
|
||||
auto d_dofs = dofs.Read(use_dev);
|
||||
const auto d_dofs = dofs.Read(use_dev);
|
||||
mfem::forall_switch(use_dev, n, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
const int j = d_dofs[i];
|
||||
@@ -721,8 +742,8 @@ void Vector::SetSubVector(const Array<int> &dofs, const Vector &elemvect)
|
||||
const int n = dofs.Size();
|
||||
// Use read+write access for X - we only modify some of its entries
|
||||
auto d_X = ReadWrite(use_dev);
|
||||
auto d_y = elemvect.Read(use_dev);
|
||||
auto d_dofs = dofs.Read(use_dev);
|
||||
const auto d_y = elemvect.Read(use_dev);
|
||||
const auto d_dofs = dofs.Read(use_dev);
|
||||
mfem::forall_switch(use_dev, n, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
const int dof_i = d_dofs[i];
|
||||
@@ -740,7 +761,7 @@ void Vector::SetSubVector(const Array<int> &dofs, const Vector &elemvect)
|
||||
void Vector::SetSubVector(const Array<int> &dofs, real_t *elem_data)
|
||||
{
|
||||
// Use read+write access because we overwrite only part of the data.
|
||||
data.ReadWrite(MemoryClass::HOST, size);
|
||||
HostReadWrite();
|
||||
const int n = dofs.Size();
|
||||
for (int i = 0; i < n; i++)
|
||||
{
|
||||
@@ -764,9 +785,9 @@ void Vector::AddElementVector(const Array<int> &dofs, const Vector &elemvect)
|
||||
|
||||
const bool use_dev = dofs.UseDevice() || elemvect.UseDevice();
|
||||
const int n = dofs.Size();
|
||||
auto d_y = elemvect.Read(use_dev);
|
||||
const auto d_y = elemvect.Read(use_dev);
|
||||
const auto d_dofs = dofs.Read(use_dev);
|
||||
auto d_X = ReadWrite(use_dev);
|
||||
auto d_dofs = dofs.Read(use_dev);
|
||||
mfem::forall_switch(use_dev, n, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
const int j = d_dofs[i];
|
||||
@@ -783,7 +804,7 @@ void Vector::AddElementVector(const Array<int> &dofs, const Vector &elemvect)
|
||||
|
||||
void Vector::AddElementVector(const Array<int> &dofs, real_t *elem_data)
|
||||
{
|
||||
data.ReadWrite(MemoryClass::HOST, size);
|
||||
HostReadWrite();
|
||||
const int n = dofs.Size();
|
||||
for (int i = 0; i < n; i++)
|
||||
{
|
||||
@@ -808,9 +829,9 @@ void Vector::AddElementVector(const Array<int> &dofs, const real_t a,
|
||||
|
||||
const bool use_dev = dofs.UseDevice() || elemvect.UseDevice();
|
||||
const int n = dofs.Size();
|
||||
const auto d_x = elemvect.Read(use_dev);
|
||||
const auto d_dofs = dofs.Read(use_dev);
|
||||
auto d_y = ReadWrite(use_dev);
|
||||
auto d_x = elemvect.Read(use_dev);
|
||||
auto d_dofs = dofs.Read(use_dev);
|
||||
mfem::forall_switch(use_dev, n, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
const int j = d_dofs[i];
|
||||
@@ -835,7 +856,7 @@ void Vector::SetSubVectorComplement(const Array<int> &dofs, const real_t val)
|
||||
Device::GetHostMemoryType());
|
||||
auto d_data = ReadWrite(use_dev);
|
||||
auto d_dofs_vals = dofs_vals.Write(use_dev);
|
||||
auto d_dofs = dofs.Read(use_dev);
|
||||
const auto d_dofs = dofs.Read(use_dev);
|
||||
mfem::forall_switch(use_dev, n, [=] MFEM_HOST_DEVICE (int i) { d_dofs_vals[i] = d_data[d_dofs[i]]; });
|
||||
mfem::forall_switch(use_dev, N, [=] MFEM_HOST_DEVICE (int i) { d_data[i] = val; });
|
||||
mfem::forall_switch(use_dev, n, [=] MFEM_HOST_DEVICE (int i) { d_data[d_dofs[i]] = d_dofs_vals[i]; });
|
||||
@@ -844,7 +865,7 @@ void Vector::SetSubVectorComplement(const Array<int> &dofs, const real_t val)
|
||||
void Vector::Print(std::ostream &os, int width) const
|
||||
{
|
||||
if (!size) { return; }
|
||||
data.Read(MemoryClass::HOST, size);
|
||||
HostRead();
|
||||
for (int i = 0; 1; )
|
||||
{
|
||||
os << ZeroSubnormal(data[i]);
|
||||
@@ -870,7 +891,7 @@ void Vector::Print(adios2stream &os,
|
||||
const std::string& variable_name) const
|
||||
{
|
||||
if (!size) { return; }
|
||||
data.Read(MemoryClass::HOST, size);
|
||||
HostRead();
|
||||
os.engine.Put(variable_name, &data[0] );
|
||||
}
|
||||
#endif
|
||||
@@ -928,10 +949,7 @@ void Vector::PrintHash(std::ostream &os) const
|
||||
|
||||
void Vector::Randomize(int seed)
|
||||
{
|
||||
if (seed == 0)
|
||||
{
|
||||
seed = (int)time(0);
|
||||
}
|
||||
if (seed == 0) { seed = (int)time(0); }
|
||||
|
||||
srand((unsigned)seed);
|
||||
|
||||
@@ -947,20 +965,15 @@ real_t Vector::Norml2() const
|
||||
// Scale entries of Vector on the fly, using algorithms from
|
||||
// std::hypot() and LAPACK's drm2. This scaling ensures that the
|
||||
// argument of each call to std::pow is <= 1 to avoid overflow.
|
||||
if (size == 0)
|
||||
{
|
||||
return 0.0;
|
||||
}
|
||||
if (size == 0) { return 0.0; }
|
||||
|
||||
auto m_data = Read(UseDevice());
|
||||
const auto m_data = Read(UseDevice());
|
||||
using value_type = DevicePair<real_t, real_t>;
|
||||
value_type res;
|
||||
res.first = 0;
|
||||
res.second = 0;
|
||||
// first compute sum (|m_data|/scale)^2
|
||||
reduce(
|
||||
size, res,
|
||||
[=] MFEM_HOST_DEVICE(int i, value_type &r)
|
||||
reduce(size, res, [=] MFEM_HOST_DEVICE(int i, value_type &r)
|
||||
{
|
||||
real_t n = fabs(m_data[i]);
|
||||
if (n > 0)
|
||||
@@ -987,11 +1000,12 @@ real_t Vector::Normlinf() const
|
||||
{
|
||||
if (size == 0) { return 0; }
|
||||
|
||||
auto m_data = Read(UseDevice());
|
||||
real_t res = 0;
|
||||
reduce(
|
||||
size, res,
|
||||
[=] MFEM_HOST_DEVICE(int i, real_t &r) { r = fmax(r, fabs(m_data[i])); },
|
||||
const auto m_data = Read(UseDevice());
|
||||
reduce(size, res, [=] MFEM_HOST_DEVICE(int i, real_t &r)
|
||||
{
|
||||
r = fmax(r, fabs(m_data[i]));
|
||||
},
|
||||
MaxReducer<real_t> {}, UseDevice(), vector_workspace());
|
||||
return res;
|
||||
}
|
||||
@@ -1000,11 +1014,12 @@ real_t Vector::Norml1() const
|
||||
{
|
||||
if (size == 0) { return 0.0; }
|
||||
|
||||
auto m_data = Read(UseDevice());
|
||||
real_t res = 0;
|
||||
reduce(
|
||||
size, res,
|
||||
[=] MFEM_HOST_DEVICE(int i, real_t &r) { r += fabs(m_data[i]); },
|
||||
const auto m_data = Read(UseDevice());
|
||||
reduce(size, res, [=] MFEM_HOST_DEVICE(int i, real_t &r)
|
||||
{
|
||||
r += fabs(m_data[i]);
|
||||
},
|
||||
SumReducer<real_t> {}, UseDevice(), vector_workspace());
|
||||
return res;
|
||||
}
|
||||
@@ -1013,33 +1028,24 @@ real_t Vector::Normlp(real_t p) const
|
||||
{
|
||||
MFEM_ASSERT(p > 0.0, "Vector::Normlp");
|
||||
|
||||
if (p == 1.0)
|
||||
{
|
||||
return Norml1();
|
||||
}
|
||||
if (p == 2.0)
|
||||
{
|
||||
return Norml2();
|
||||
}
|
||||
if (p == 1.0) { return Norml1(); }
|
||||
|
||||
if (p == 2.0) { return Norml2(); }
|
||||
|
||||
if (p < infinity())
|
||||
{
|
||||
// Scale entries of Vector on the fly, using algorithms from
|
||||
// std::hypot() and LAPACK's drm2. This scaling ensures that the
|
||||
// argument of each call to std::pow is <= 1 to avoid overflow.
|
||||
if (size == 0)
|
||||
{
|
||||
return 0.0;
|
||||
}
|
||||
if (size == 0) { return 0.0; }
|
||||
|
||||
auto m_data = Read(UseDevice());
|
||||
using value_type = DevicePair<real_t, real_t>;
|
||||
value_type res;
|
||||
res.first = 0;
|
||||
res.second = 0;
|
||||
const auto m_data = Read(UseDevice());
|
||||
// first compute sum (|m_data|/scale)^p
|
||||
reduce(
|
||||
size, res,
|
||||
[=] MFEM_HOST_DEVICE(int i, value_type &r)
|
||||
reduce(size, res, [=] MFEM_HOST_DEVICE(int i, value_type &r)
|
||||
{
|
||||
real_t n = fabs(m_data[i]);
|
||||
if (n > 0)
|
||||
@@ -1068,163 +1074,182 @@ real_t Vector::Normlp(real_t p) const
|
||||
real_t Vector::operator*(const Vector &v) const
|
||||
{
|
||||
MFEM_ASSERT(size == v.size, "incompatible Vectors!");
|
||||
|
||||
if (size == 0) { return 0.0; }
|
||||
|
||||
const bool use_dev = UseDevice() || v.UseDevice();
|
||||
const auto m_data = Read(use_dev), v_data = v.Read(use_dev);
|
||||
|
||||
auto m_data = Read(use_dev);
|
||||
auto v_data = v.Read(use_dev);
|
||||
|
||||
if (use_dev)
|
||||
{
|
||||
// special path for OCCA and OpenMP
|
||||
// If OCCA is enabled, it handles all selected backends
|
||||
#ifdef MFEM_USE_OCCA
|
||||
if (DeviceCanUseOcca())
|
||||
{
|
||||
return occa::linalg::dot<real_t, real_t, real_t>(
|
||||
OccaMemoryRead(data, size), OccaMemoryRead(v.data, size));
|
||||
}
|
||||
if (use_dev && DeviceCanUseOcca())
|
||||
{
|
||||
return occa::linalg::dot<real_t, real_t, real_t>(
|
||||
OccaMemoryRead(data, size), OccaMemoryRead(v.data, size));
|
||||
}
|
||||
#endif
|
||||
|
||||
#ifdef MFEM_USE_OPENMP
|
||||
if (Device::Allows(Backend::OMP_MASK))
|
||||
const auto compute_dot = [&]()
|
||||
{
|
||||
real_t res = 0;
|
||||
reduce(size, res, [=] MFEM_HOST_DEVICE (int i, real_t &r)
|
||||
{
|
||||
r += m_data[i] * v_data[i];
|
||||
},
|
||||
SumReducer<real_t> {}, use_dev, vector_workspace());
|
||||
return res;
|
||||
};
|
||||
|
||||
// Device backends have top priority
|
||||
if (Device::Allows(Backend::DEVICE_MASK)) { return compute_dot(); }
|
||||
|
||||
// Special path for OpenMP
|
||||
#ifdef MFEM_USE_OPENMP
|
||||
if (use_dev && Device::Allows(Backend::OMP_MASK))
|
||||
{
|
||||
// By default, use a deterministic way of computing the dot product
|
||||
#define MFEM_USE_OPENMP_DETERMINISTIC_DOT
|
||||
#ifdef MFEM_USE_OPENMP_DETERMINISTIC_DOT
|
||||
// By default, use a deterministic way of computing the dot product
|
||||
static Vector th_dot;
|
||||
#pragma omp parallel
|
||||
static Vector th_dot;
|
||||
#pragma omp parallel
|
||||
{
|
||||
const int nt = omp_get_num_threads();
|
||||
#pragma omp master
|
||||
th_dot.SetSize(nt);
|
||||
const int tid = omp_get_thread_num();
|
||||
const int stride = (size + nt - 1) / nt;
|
||||
const int start = tid * stride;
|
||||
const int stop = std::min(start + stride, size);
|
||||
real_t my_dot = 0.0;
|
||||
for (int i = start; i < stop; i++)
|
||||
{
|
||||
const int nt = omp_get_num_threads();
|
||||
#pragma omp master
|
||||
th_dot.SetSize(nt);
|
||||
const int tid = omp_get_thread_num();
|
||||
const int stride = (size + nt - 1) / nt;
|
||||
const int start = tid * stride;
|
||||
const int stop = std::min(start + stride, size);
|
||||
real_t my_dot = 0.0;
|
||||
for (int i = start; i < stop; i++)
|
||||
{
|
||||
my_dot += m_data[i] * v_data[i];
|
||||
}
|
||||
#pragma omp barrier
|
||||
th_dot(tid) = my_dot;
|
||||
my_dot += m_data[i] * v_data[i];
|
||||
}
|
||||
return th_dot.Sum();
|
||||
#else
|
||||
// The standard way of computing the dot product is non-deterministic
|
||||
real_t prod = 0.0;
|
||||
#pragma omp parallel for reduction(+ : prod)
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
prod += m_data[i] * v_data[i];
|
||||
}
|
||||
return prod;
|
||||
#endif // MFEM_USE_OPENMP_DETERMINISTIC_DOT
|
||||
#pragma omp barrier
|
||||
th_dot(tid) = my_dot;
|
||||
}
|
||||
#endif // MFEM_USE_OPENMP
|
||||
return th_dot.Sum();
|
||||
#else
|
||||
// The standard way of computing the dot product is non-deterministic
|
||||
real_t prod = 0.0;
|
||||
#pragma omp parallel for reduction(+ : prod)
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
prod += m_data[i] * v_data[i];
|
||||
}
|
||||
return prod;
|
||||
#endif // MFEM_USE_OPENMP_DETERMINISTIC_DOT
|
||||
}
|
||||
#endif // MFEM_USE_OPENMP
|
||||
|
||||
// normal path for everything else (cuda, hip, debug, cpu)
|
||||
real_t res = 0;
|
||||
reduce(
|
||||
size, res,
|
||||
[=] MFEM_HOST_DEVICE(int i, real_t &r) { r += m_data[i] * v_data[i]; },
|
||||
SumReducer<real_t> {}, use_dev, vector_workspace());
|
||||
return res;
|
||||
// All other CPU backends
|
||||
return compute_dot();
|
||||
}
|
||||
|
||||
real_t Vector::Min() const
|
||||
{
|
||||
if (size == 0) { return infinity(); }
|
||||
|
||||
const bool use_dev = UseDevice();
|
||||
auto m_data = Read(use_dev);
|
||||
|
||||
if (use_dev)
|
||||
{
|
||||
// special case for OCCA and OpenMP
|
||||
const auto use_dev = UseDevice();
|
||||
const auto m_data = Read(use_dev);
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
if (DeviceCanUseOcca())
|
||||
{
|
||||
return occa::linalg::min<real_t,real_t>(OccaMemoryRead(data, size));
|
||||
}
|
||||
#endif
|
||||
|
||||
#ifdef MFEM_USE_OPENMP
|
||||
if (Device::Allows(Backend::OMP_MASK))
|
||||
{
|
||||
real_t minimum = m_data[0];
|
||||
#pragma omp parallel for reduction(min:minimum)
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
minimum = std::min(minimum, m_data[i]);
|
||||
}
|
||||
return minimum;
|
||||
}
|
||||
#endif
|
||||
if (use_dev && DeviceCanUseOcca())
|
||||
{
|
||||
return occa::linalg::min<real_t,real_t>(OccaMemoryRead(data, size));
|
||||
}
|
||||
#endif
|
||||
|
||||
// normal path for everything else (cuda, hip, debug, cpu)
|
||||
real_t res = infinity();
|
||||
reduce(
|
||||
size, res,
|
||||
[=] MFEM_HOST_DEVICE(int i, real_t &r) { r = fmin(r, m_data[i]); },
|
||||
MinReducer<real_t> {}, use_dev, vector_workspace());
|
||||
return res;
|
||||
const auto compute_min = [&]()
|
||||
{
|
||||
real_t res = infinity();
|
||||
reduce(size, res, [=] MFEM_HOST_DEVICE(int i, real_t &r)
|
||||
{
|
||||
r = fmin(r, m_data[i]);
|
||||
},
|
||||
MinReducer<real_t> {}, use_dev, vector_workspace());
|
||||
return res;
|
||||
};
|
||||
|
||||
// Device backends have top priority
|
||||
if (Device::Allows(Backend::DEVICE_MASK)) { return compute_min(); }
|
||||
|
||||
// Special path for OpenMP
|
||||
#ifdef MFEM_USE_OPENMP
|
||||
if (use_dev && Device::Allows(Backend::OMP_MASK))
|
||||
{
|
||||
real_t minimum = m_data[0];
|
||||
#pragma omp parallel for reduction(min:minimum)
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
minimum = std::min(minimum, m_data[i]);
|
||||
}
|
||||
return minimum;
|
||||
}
|
||||
#endif
|
||||
|
||||
// All other CPU backends
|
||||
return compute_min();
|
||||
}
|
||||
|
||||
real_t Vector::Max() const
|
||||
{
|
||||
if (size == 0) { return -infinity(); }
|
||||
|
||||
const bool use_dev = UseDevice();
|
||||
auto m_data = Read(use_dev);
|
||||
const auto use_dev = UseDevice();
|
||||
const auto m_data = Read(use_dev);
|
||||
|
||||
if (use_dev)
|
||||
{
|
||||
// special cases where OCCA or OenMP are used
|
||||
#ifdef MFEM_USE_OCCA
|
||||
if (DeviceCanUseOcca())
|
||||
{
|
||||
return occa::linalg::max<real_t, real_t>(OccaMemoryRead(data, size));
|
||||
}
|
||||
#endif
|
||||
|
||||
#ifdef MFEM_USE_OPENMP
|
||||
if (Device::Allows(Backend::OMP_MASK))
|
||||
{
|
||||
real_t maximum = m_data[0];
|
||||
#pragma omp parallel for reduction(max : maximum)
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
maximum = fmax(maximum, m_data[i]);
|
||||
}
|
||||
return maximum;
|
||||
}
|
||||
#endif
|
||||
if (use_dev && DeviceCanUseOcca())
|
||||
{
|
||||
return occa::linalg::max<real_t, real_t>(OccaMemoryRead(data, size));
|
||||
}
|
||||
#endif
|
||||
|
||||
// normal path for everything else (cuda, hip, debug, cpu)
|
||||
real_t res = -infinity();
|
||||
reduce(
|
||||
size, res,
|
||||
[=] MFEM_HOST_DEVICE(int i, real_t &r) { r = fmax(r, m_data[i]); },
|
||||
MaxReducer<real_t> {}, use_dev, vector_workspace());
|
||||
return res;
|
||||
const auto compute_max = [&]()
|
||||
{
|
||||
real_t res = -infinity();
|
||||
reduce(size, res, [=] MFEM_HOST_DEVICE(int i, real_t &r)
|
||||
{
|
||||
r = fmax(r, m_data[i]);
|
||||
},
|
||||
MaxReducer<real_t> {}, use_dev, vector_workspace());
|
||||
return res;
|
||||
};
|
||||
|
||||
// Device backends have top priority
|
||||
if (Device::Allows(Backend::DEVICE_MASK)) { return compute_max(); }
|
||||
|
||||
// Special path for OpenMP
|
||||
#ifdef MFEM_USE_OPENMP
|
||||
if (use_dev && Device::Allows(Backend::OMP_MASK))
|
||||
{
|
||||
real_t maximum = m_data[0];
|
||||
#pragma omp parallel for reduction(max : maximum)
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
maximum = fmax(maximum, m_data[i]);
|
||||
}
|
||||
return maximum;
|
||||
}
|
||||
#endif
|
||||
|
||||
// All other CPU backends
|
||||
return compute_max();
|
||||
}
|
||||
|
||||
real_t Vector::Sum() const
|
||||
{
|
||||
if (size == 0) { return 0.0; }
|
||||
|
||||
auto m_data = Read(UseDevice());
|
||||
real_t res = 0;
|
||||
reduce(
|
||||
size, res, [=] MFEM_HOST_DEVICE(int i, real_t &r) { r += m_data[i]; },
|
||||
const auto m_data = Read(UseDevice());
|
||||
reduce(size, res, [=] MFEM_HOST_DEVICE(int i, real_t &r)
|
||||
{
|
||||
r += m_data[i];
|
||||
},
|
||||
SumReducer<real_t> {}, UseDevice(), vector_workspace());
|
||||
return res;
|
||||
}
|
||||
|
||||
}
|
||||
} // namespace mfem
|
||||
|
||||
@@ -80,6 +80,8 @@ inline real_t rand_real()
|
||||
/// Vector data type.
|
||||
class Vector
|
||||
{
|
||||
friend class ComplexVector;
|
||||
|
||||
protected:
|
||||
|
||||
Memory<real_t> data;
|
||||
@@ -360,6 +362,12 @@ public:
|
||||
/// (*this)(i) = 1.0 / (*this)(i)
|
||||
void Reciprocal();
|
||||
|
||||
/// (*this)(i) = abs((*this)(i))
|
||||
void Abs();
|
||||
|
||||
/// (*this)(i) = pow((*this)(i), p)
|
||||
void Pow(const real_t p);
|
||||
|
||||
/// Swap the contents of two Vectors
|
||||
inline void Swap(Vector &other);
|
||||
|
||||
|
||||
@@ -125,11 +125,11 @@ EXAMPLE_TEST_DIRS := examples
|
||||
|
||||
MINIAPP_SUBDIRS = common electromagnetics meshing navier performance tools \
|
||||
toys nurbs gslib adjoint solvers shifted mtop parelag tribol autodiff dfem \
|
||||
hooke multidomain dpg hdiv-linear-solver spde
|
||||
hooke multidomain dpg hdiv-linear-solver spde diag-smoothers
|
||||
MINIAPP_DIRS := $(addprefix miniapps/,$(MINIAPP_SUBDIRS))
|
||||
MINIAPP_TEST_DIRS := $(filter-out %/common,$(MINIAPP_DIRS))
|
||||
MINIAPP_USE_COMMON := $(addprefix miniapps/,electromagnetics meshing tools \
|
||||
toys shifted dpg)
|
||||
toys shifted dpg diag-smoothers)
|
||||
|
||||
EM_DIRS = $(EXAMPLE_DIRS) $(MINIAPP_DIRS)
|
||||
|
||||
|
||||
+35
-27
@@ -26,6 +26,12 @@
|
||||
}\
|
||||
}
|
||||
|
||||
#if defined(MFEM_USE_DOUBLE)
|
||||
#define MFEM_NETCDF_REAL_T NC_DOUBLE
|
||||
#elif defined(MFEM_USE_SINGLE)
|
||||
#define MFEM_NETCDF_REAL_T NC_FLOAT
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
@@ -135,18 +141,18 @@ public:
|
||||
/// @brief Writes the mesh to an ExodusII file.
|
||||
/// @param fpath The path to the file.
|
||||
/// @param flags NC_CLOBBER will overwrite existing file.
|
||||
void PrintExodusII(std::string fpath, int flags = NC_CLOBBER);
|
||||
void PrintExodusII(const std::string &fpath, int flags = NC_CLOBBER);
|
||||
|
||||
/// @brief Static method for writing a mesh to an ExodusII file.
|
||||
/// @param mesh The mesh to write to the file.
|
||||
/// @param fpath The path to the file.
|
||||
/// @param flags NetCDF file flags.
|
||||
static void PrintExodusII(Mesh & mesh, std::string fpath,
|
||||
static void PrintExodusII(Mesh & mesh, const std::string &fpath,
|
||||
int flags = NC_CLOBBER);
|
||||
|
||||
protected:
|
||||
/// @brief Closes any open file and creates a NetCDF file using selected flags.
|
||||
void OpenExodusII(std::string fpath, int flags);
|
||||
void OpenExodusII(const std::string &fpath, int flags);
|
||||
|
||||
/// @brief Closes any open file.
|
||||
void CloseExodusII();
|
||||
@@ -167,9 +173,9 @@ protected:
|
||||
std::unordered_set<int> GenerateUniqueNodeIDs();
|
||||
|
||||
/// @brief Populates vectors with x, y, z coordinates from mesh.
|
||||
void ExtractVertexCoordinates(std::vector<double> & coordx,
|
||||
std::vector<double> & coordy,
|
||||
std::vector<double> & coordz);
|
||||
void ExtractVertexCoordinates(std::vector<real_t> &coordx,
|
||||
std::vector<real_t> &coordy,
|
||||
std::vector<real_t> &coordz);
|
||||
|
||||
/// @brief Writes node connectivity for a particular block.
|
||||
/// @param block_id The block to write to the file.
|
||||
@@ -187,7 +193,7 @@ protected:
|
||||
/// @brief Writes the number of elements in the mesh.
|
||||
void WriteNumOfElements();
|
||||
|
||||
/// @brief Writes the floating-point word size (4 == float; 8 == double).
|
||||
/// @brief Writes the floating-point word size (sizeof(real_t)).
|
||||
void WriteFloatingPointWordSize();
|
||||
|
||||
/// @brief Writes the API version.
|
||||
@@ -291,7 +297,7 @@ private:
|
||||
std::map<int, std::vector<int>> exodusII_side_ids_for_boundary_id;
|
||||
};
|
||||
|
||||
void Mesh::PrintExodusII(const std::string fpath)
|
||||
void Mesh::PrintExodusII(const std::string &fpath)
|
||||
{
|
||||
ExodusIIWriter::PrintExodusII(*this, fpath);
|
||||
}
|
||||
@@ -362,7 +368,7 @@ void ExodusIIWriter::WriteExodusIIMeshInformation()
|
||||
WriteNodeSets();
|
||||
}
|
||||
|
||||
void ExodusIIWriter::PrintExodusII(std::string fpath, int flags)
|
||||
void ExodusIIWriter::PrintExodusII(const std::string &fpath, int flags)
|
||||
{
|
||||
OpenExodusII(fpath, flags);
|
||||
|
||||
@@ -374,7 +380,7 @@ void ExodusIIWriter::PrintExodusII(std::string fpath, int flags)
|
||||
mfem::out << "Mesh successfully written to Exodus II file" << std::endl;
|
||||
}
|
||||
|
||||
void ExodusIIWriter::PrintExodusII(Mesh & mesh, std::string fpath,
|
||||
void ExodusIIWriter::PrintExodusII(Mesh &mesh, const std::string &fpath,
|
||||
int flags)
|
||||
{
|
||||
ExodusIIWriter writer(mesh);
|
||||
@@ -382,7 +388,7 @@ void ExodusIIWriter::PrintExodusII(Mesh & mesh, std::string fpath,
|
||||
writer.PrintExodusII(fpath, flags);
|
||||
}
|
||||
|
||||
void ExodusIIWriter::OpenExodusII(std::string fpath, int flags)
|
||||
void ExodusIIWriter::OpenExodusII(const std::string &fpath, int flags)
|
||||
{
|
||||
CloseExodusII(); // Close any open files.
|
||||
|
||||
@@ -422,7 +428,7 @@ void ExodusIIWriter::WriteNumOfElements()
|
||||
|
||||
void ExodusIIWriter::WriteFloatingPointWordSize()
|
||||
{
|
||||
const int word_size = 8;
|
||||
const int word_size = sizeof(real_t);
|
||||
PutAtt(NC_GLOBAL, ExodusIILabels::EXODUS_FLOATING_POINT_WORD_SIZE_LABEL,
|
||||
NC_INT, 1,
|
||||
&word_size);
|
||||
@@ -430,13 +436,15 @@ void ExodusIIWriter::WriteFloatingPointWordSize()
|
||||
|
||||
void ExodusIIWriter::WriteAPIVersion()
|
||||
{
|
||||
PutAtt(NC_GLOBAL, ExodusIILabels::EXODUS_API_VERSION_LABEL, NC_FLOAT, 1,
|
||||
PutAtt(NC_GLOBAL, ExodusIILabels::EXODUS_API_VERSION_LABEL, MFEM_NETCDF_REAL_T,
|
||||
1,
|
||||
&ExodusIILabels::EXODUS_API_VERSION);
|
||||
}
|
||||
|
||||
void ExodusIIWriter::WriteDatabaseVersion()
|
||||
{
|
||||
PutAtt(NC_GLOBAL, ExodusIILabels::EXODUS_DATABASE_VERSION_LABEL, NC_FLOAT, 1,
|
||||
PutAtt(NC_GLOBAL, ExodusIILabels::EXODUS_DATABASE_VERSION_LABEL,
|
||||
MFEM_NETCDF_REAL_T, 1,
|
||||
&ExodusIILabels::EXODUS_DATABASE_VERSION);
|
||||
}
|
||||
|
||||
@@ -607,25 +615,25 @@ void ExodusIIWriter::WriteNodalCoordinates()
|
||||
DefineDimension("num_nodes", num_nodes, &num_nodes_id);
|
||||
|
||||
// 3. Extract the nodal coordinates.
|
||||
// NB: assume doubles (could be floats!); ndims = 1 (vector).
|
||||
// NB: writes in format real_t (double or float); ndims = 1 (vector).
|
||||
// https://docs.unidata.ucar.edu/netcdf-c/current/group__variables.html#gac7e8662c51f3bb07d1fc6d6c6d9052c8
|
||||
std::vector<double> coordx(num_nodes);
|
||||
std::vector<double> coordy(num_nodes);
|
||||
std::vector<double> coordz(mesh.Dimension() == 3 ? num_nodes : 0);
|
||||
std::vector<real_t> coordx(num_nodes);
|
||||
std::vector<real_t> coordy(num_nodes);
|
||||
std::vector<real_t> coordz(mesh.Dimension() == 3 ? num_nodes : 0);
|
||||
|
||||
ExtractVertexCoordinates(coordx, coordy, coordz);
|
||||
|
||||
// 4. Define and put the nodal coordinates.
|
||||
DefineAndPutVar(ExodusIILabels::EXODUS_COORDX_LABEL, NC_DOUBLE, 1,
|
||||
DefineAndPutVar(ExodusIILabels::EXODUS_COORDX_LABEL, MFEM_NETCDF_REAL_T, 1,
|
||||
&num_nodes_id,
|
||||
coordx.data());
|
||||
DefineAndPutVar(ExodusIILabels::EXODUS_COORDY_LABEL, NC_DOUBLE, 1,
|
||||
DefineAndPutVar(ExodusIILabels::EXODUS_COORDY_LABEL, MFEM_NETCDF_REAL_T, 1,
|
||||
&num_nodes_id,
|
||||
coordy.data());
|
||||
|
||||
if (mesh.Dimension() == 3)
|
||||
{
|
||||
DefineAndPutVar(ExodusIILabels::EXODUS_COORDZ_LABEL, NC_DOUBLE, 1,
|
||||
DefineAndPutVar(ExodusIILabels::EXODUS_COORDZ_LABEL, MFEM_NETCDF_REAL_T, 1,
|
||||
&num_nodes_id,
|
||||
coordz.data());
|
||||
}
|
||||
@@ -770,9 +778,9 @@ void ExodusIIWriter::WriteNodeConnectivityForBlock(const int block_id)
|
||||
}
|
||||
|
||||
|
||||
void ExodusIIWriter::ExtractVertexCoordinates(std::vector<double> & coordx,
|
||||
std::vector<double> & coordy,
|
||||
std::vector<double> & coordz)
|
||||
void ExodusIIWriter::ExtractVertexCoordinates(std::vector<real_t> & coordx,
|
||||
std::vector<real_t> & coordy,
|
||||
std::vector<real_t> & coordz)
|
||||
{
|
||||
if (mesh.GetNodes()) // Higher-order.
|
||||
{
|
||||
@@ -782,7 +790,7 @@ void ExodusIIWriter::ExtractVertexCoordinates(std::vector<double> & coordx,
|
||||
sorted_node_ids.assign(unordered_node_ids.begin(), unordered_node_ids.end());
|
||||
std::sort(sorted_node_ids.begin(), sorted_node_ids.end());
|
||||
|
||||
double coordinates[3];
|
||||
real_t coordinates[3];
|
||||
for (size_t i = 0; i < sorted_node_ids.size(); i++)
|
||||
{
|
||||
int node_id = sorted_node_ids[i];
|
||||
@@ -802,7 +810,7 @@ void ExodusIIWriter::ExtractVertexCoordinates(std::vector<double> & coordx,
|
||||
{
|
||||
for (int ivertex = 0; ivertex < mesh.GetNV(); ivertex++)
|
||||
{
|
||||
double * coordinates = mesh.GetVertex(ivertex);
|
||||
real_t *coordinates = mesh.GetVertex(ivertex);
|
||||
|
||||
coordx[ivertex] = coordinates[0];
|
||||
coordy[ivertex] = coordinates[1];
|
||||
@@ -1080,4 +1088,4 @@ void ExodusIIWriter::CheckNodalFESpaceIsSecondOrderH1() const
|
||||
|
||||
#endif
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
+128
-181
@@ -2994,6 +2994,7 @@ void Mesh::DoNodeReorder(DSTable *old_v_to_v, Table *old_elem_vert)
|
||||
const int num_edge_dofs = old_dofs.Size();
|
||||
|
||||
// Save the original nodes
|
||||
Nodes->HostReadWrite(); // for "(*Nodes)() = "
|
||||
const Vector onodes = *Nodes;
|
||||
|
||||
// vertex dofs do not need to be moved
|
||||
@@ -3249,6 +3250,19 @@ int Mesh::GetPatchBdrAttribute(int i) const
|
||||
return NURBSext->GetPatchBdrAttribute(i);
|
||||
}
|
||||
|
||||
void Mesh::GetNURBSPatches(Array<NURBSPatch*> &patches)
|
||||
{
|
||||
MFEM_VERIFY(NURBSext, "Must be a NURBS mesh");
|
||||
// This sets the data in NURBSPatch(es) from the control points (Nodes)
|
||||
NURBSext->ConvertToPatches(*Nodes);
|
||||
|
||||
// Deep copy patches
|
||||
NURBSext->GetPatches(patches);
|
||||
|
||||
// Among other things, this deletes patches in NURBSext
|
||||
UpdateNURBS();
|
||||
}
|
||||
|
||||
void Mesh::FinalizeTetMesh(int generate_edges, int refine, bool fix_orientation)
|
||||
{
|
||||
FinalizeCheck();
|
||||
@@ -6273,7 +6287,7 @@ void Mesh::UpdateNURBS()
|
||||
GenerateFaces();
|
||||
}
|
||||
|
||||
void Mesh::LoadPatchTopo(std::istream &input, Array<int> &edge_to_knot)
|
||||
void Mesh::LoadPatchTopo(std::istream &input, Array<int> &edge_to_ukv)
|
||||
{
|
||||
SetEmpty();
|
||||
|
||||
@@ -6313,20 +6327,20 @@ void Mesh::LoadPatchTopo(std::istream &input, Array<int> &edge_to_knot)
|
||||
if (NumOfEdges > 0)
|
||||
{
|
||||
edge_vertex = new Table(NumOfEdges, 2);
|
||||
edge_to_knot.SetSize(NumOfEdges);
|
||||
edge_to_ukv.SetSize(NumOfEdges);
|
||||
for (int j = 0; j < NumOfEdges; j++)
|
||||
{
|
||||
int *v = edge_vertex->GetRow(j);
|
||||
input >> edge_to_knot[j] >> v[0] >> v[1];
|
||||
input >> edge_to_ukv[j] >> v[0] >> v[1];
|
||||
if (v[0] > v[1])
|
||||
{
|
||||
edge_to_knot[j] = -1 - edge_to_knot[j];
|
||||
edge_to_ukv[j] = -1 - edge_to_ukv[j];
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
edge_to_knot.SetSize(0);
|
||||
edge_to_ukv.SetSize(0);
|
||||
}
|
||||
|
||||
skip_comment_lines(input, '#');
|
||||
@@ -6338,196 +6352,129 @@ void Mesh::LoadPatchTopo(std::istream &input, Array<int> &edge_to_knot)
|
||||
FinalizeTopology();
|
||||
CheckBdrElementOrientation(); // check and fix boundary element orientation
|
||||
|
||||
/* Generate knot 2 edge mapping -- if edges are not specified in the mesh file
|
||||
See data/two-squares-nurbs-autoedge.mesh for an example */
|
||||
if (edge_to_knot.Size() == 0)
|
||||
/* Generate edge to knotvector mapping if edges are not specified in the
|
||||
mesh file. See miniapps/nurbs/meshes/two-squares-nurbs-autoedge.mesh
|
||||
for an example */
|
||||
if (edge_to_ukv.Size() == 0)
|
||||
{
|
||||
edge_vertex = new Table(NumOfEdges, 2);
|
||||
edge_to_knot.SetSize(NumOfEdges);
|
||||
constexpr int notset = -9999999;
|
||||
edge_to_knot = notset;
|
||||
Array<int> edges;
|
||||
Array<int> oedge;
|
||||
int knot = 0;
|
||||
Array<int> ukv_to_rpkv;
|
||||
GetEdgeToUniqueKnotvector(edge_to_ukv, ukv_to_rpkv);
|
||||
}
|
||||
}
|
||||
|
||||
Array<int> edge0, edge1;
|
||||
int flip = 1;
|
||||
if (Dimension() == 2)
|
||||
void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
|
||||
Array<int> &ukv_to_rpkv) const
|
||||
{
|
||||
const int dim = Dimension(); // topological (not physical) dimension
|
||||
const int NP = NumOfElements; // number of patches
|
||||
const int NPKV = NP * dim; // number of patch knotvectors
|
||||
constexpr int notset = -9999999;
|
||||
// Sign convention
|
||||
auto sign = [](int i) { return -1 - i; };
|
||||
auto unsign = [](int i) { return (i < 0) ? -1 - i : i; };
|
||||
// Edge index -> dimension convention
|
||||
auto edge_to_dim = [](int i) { return (i < 8) ? ((i & 1) ? 1 : 0) : 2; };
|
||||
|
||||
Array<int> v(2); // vertices of an edge
|
||||
|
||||
// 1D case is special: edge index = signed element index
|
||||
// ukv_to_rpkv = Identity
|
||||
if (dim == 1)
|
||||
{
|
||||
edge_to_ukv.SetSize(NP);
|
||||
ukv_to_rpkv.SetSize(NP);
|
||||
for (int i = 0; i < NP; i++)
|
||||
{
|
||||
edge0.SetSize(2);
|
||||
edge1.SetSize(2);
|
||||
|
||||
edge0[0] = 0; edge1[0] = 2;
|
||||
edge0[1] = 1; edge1[1] = 3;
|
||||
flip = 1;
|
||||
GetElementVertices(i, v);
|
||||
// Sign is based on the edge's vertex indices
|
||||
edge_to_ukv[i] = (v[1] > v[0]) ? i : sign(i);
|
||||
ukv_to_rpkv[i] = i;
|
||||
}
|
||||
else if (Dimension() == 3)
|
||||
return;
|
||||
}
|
||||
|
||||
// Local (per-patch) variables
|
||||
Array<int> edges, oedges;
|
||||
// Edge index -> signed patch knotvector index (p*dim + d)
|
||||
Array<int> edge_to_pkv(NumOfEdges);
|
||||
edge_to_pkv.SetSize(NumOfEdges);
|
||||
edge_to_pkv = notset;
|
||||
|
||||
// Initialize pkv_map as identity - this is the storage for the
|
||||
// disjoint-set/union-find algorithm which will later be used
|
||||
// to get the map pkv_to_rpkv
|
||||
Array<int> pkv_map(NPKV);
|
||||
for (int i = 0; i < NPKV; i++)
|
||||
{
|
||||
pkv_map[i] = i;
|
||||
}
|
||||
std::function<int(int)> get_root;
|
||||
get_root = [&pkv_map, &get_root](int i) -> int
|
||||
{
|
||||
return (pkv_map[i] == i) ? i : get_root(pkv_map[i]);
|
||||
};
|
||||
auto unite = [&pkv_map, &get_root](int i, int j)
|
||||
{
|
||||
const int ri = get_root(i);
|
||||
const int rj = get_root(j);
|
||||
if (ri == rj) return;
|
||||
// keep the lowest index
|
||||
(ri < rj) ? pkv_map[rj] = ri : pkv_map[ri] = rj;
|
||||
};
|
||||
|
||||
// Get edge_to_pkv (one edge can link to multiple pkv) and pkv_map
|
||||
for (int p = 0; p < NP; p++)
|
||||
{
|
||||
GetElementEdges(p, edges, oedges);
|
||||
|
||||
// First loop checks for if edge has already been set
|
||||
for (int i = 0; i < edges.Size(); i++)
|
||||
{
|
||||
edge0.SetSize(9);
|
||||
edge1.SetSize(9);
|
||||
const int edge = edges[i];
|
||||
const int d = edge_to_dim(i);
|
||||
const int pkv = p*dim+d;
|
||||
|
||||
edge0[0] = 0; edge1[0] = 2;
|
||||
edge0[1] = 0; edge1[1] = 4;
|
||||
edge0[2] = 0; edge1[2] = 6;
|
||||
|
||||
edge0[3] = 1; edge1[3] = 3;
|
||||
edge0[4] = 1; edge1[4] = 5;
|
||||
edge0[5] = 1; edge1[5] = 7;
|
||||
|
||||
edge0[6] = 8; edge1[6] = 9;
|
||||
edge0[7] = 8; edge1[7] = 10;
|
||||
edge0[8] = 8; edge1[8] = 11;
|
||||
flip = -1;
|
||||
}
|
||||
|
||||
/* Initial assignment of knots to edges. This is an algorithm that loops over the
|
||||
patches and assigns knot vectors to edges. It starts with assigning knot vector 0
|
||||
and 1 to the edges of the first patch. Then it uses: 1) patches can share edges
|
||||
2) knot vectors on opposing edges in a patch are equal, to create edge_to_knot */
|
||||
int e0, e1, v0, v1, df;
|
||||
int p,j,k;
|
||||
for (p = 0; p < GetNE(); p++)
|
||||
{
|
||||
GetElementEdges(p, edges, oedge);
|
||||
|
||||
const int *v = elements[p]->GetVertices();
|
||||
for (j = 0; j < edges.Size(); j++)
|
||||
// We've set this edge already - link this index to it
|
||||
if (edge_to_pkv[edge] != notset)
|
||||
{
|
||||
int *vv = edge_vertex->GetRow(edges[j]);
|
||||
const int *e = elements[p]->GetEdgeVertices(j);
|
||||
if (oedge[j] == 1)
|
||||
{
|
||||
vv[0] = v[e[0]];
|
||||
vv[1] = v[e[1]];
|
||||
}
|
||||
else
|
||||
{
|
||||
vv[0] = v[e[1]];
|
||||
vv[1] = v[e[0]];
|
||||
}
|
||||
const int pkv_other = unsign(edge_to_pkv[edge]);
|
||||
unite(pkv, pkv_other);
|
||||
}
|
||||
|
||||
for (j = 0; j < edge1.Size(); j++)
|
||||
else
|
||||
{
|
||||
e0 = edges[edge0[j]];
|
||||
e1 = edges[edge1[j]];
|
||||
v0 = edge_to_knot[e0];
|
||||
v1 = edge_to_knot[e1];
|
||||
df = flip*oedge[edge0[j]]*oedge[edge1[j]];
|
||||
|
||||
// Case 1: knot vector is not set
|
||||
if ((v0 == notset) && (v1 == notset))
|
||||
{
|
||||
edge_to_knot[e0] = knot;
|
||||
edge_to_knot[e1] = knot;
|
||||
knot++;
|
||||
}
|
||||
// Case 2 & 3: knot vector on one of the two edges
|
||||
// is set earlier (in another patch). We just have
|
||||
// to copy it for the opposing edge.
|
||||
else if ((v0 != notset) && (v1 == notset))
|
||||
{
|
||||
edge_to_knot[e1] = (df >= 0 ? -v0-1 : v0);
|
||||
}
|
||||
else if ((v0 == notset) && (v1 != notset))
|
||||
{
|
||||
edge_to_knot[e0] = (df >= 0 ? -v1-1 : v1);
|
||||
}
|
||||
GetEdgeVertices(edge, v);
|
||||
// Sign is based on the edge's vertex indices
|
||||
edge_to_pkv[edge] = (v[1] > v[0]) ? pkv : sign(pkv);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/* Verify correct assignment, make sure that corresponding edges
|
||||
within patch point to same knot vector. If not assign the lowest number.
|
||||
// Construct the pkv_to_rpkv map by finding the lowest/root index
|
||||
Array<int> pkv_to_rpkv(NPKV);
|
||||
ukv_to_rpkv.SetSize(NPKV);
|
||||
for (int i = 0; i < NPKV; i++)
|
||||
{
|
||||
pkv_to_rpkv[i] = get_root(pkv_map[i]);
|
||||
ukv_to_rpkv[i] = pkv_to_rpkv[i];
|
||||
}
|
||||
ukv_to_rpkv.Sort(); // ukv is just a renumbering of rpkv
|
||||
ukv_to_rpkv.Unique();
|
||||
|
||||
We bound the while by GetNE() + 1 as this is probably the most unlucky
|
||||
case. +1 to finish without corrections. Note that this is a check and
|
||||
in general the initial assignment is correct. Then the while is performed
|
||||
only once. Only on very tricky meshes it might need corrections.*/
|
||||
int corrections;
|
||||
int passes = 0;
|
||||
do
|
||||
{
|
||||
corrections = 0;
|
||||
for (p = 0; p < GetNE(); p++)
|
||||
{
|
||||
GetElementEdges(p, edges, oedge);
|
||||
for (j = 0; j < edge1.Size(); j++)
|
||||
{
|
||||
e0 = edges[edge0[j]];
|
||||
e1 = edges[edge1[j]];
|
||||
v0 = edge_to_knot[e0];
|
||||
v1 = edge_to_knot[e1];
|
||||
v0 = ( v0 >= 0 ? v0 : -v0-1);
|
||||
v1 = ( v1 >= 0 ? v1 : -v1-1);
|
||||
if (v0 != v1)
|
||||
{
|
||||
corrections++;
|
||||
if (v0 < v1)
|
||||
{
|
||||
edge_to_knot[e1] = (oedge[edge1[j]] >= 0 ? v0 : -v0-1);
|
||||
}
|
||||
else if (v1 < v0)
|
||||
{
|
||||
edge_to_knot[e0] = (oedge[edge0[j]] >= 0 ? v1 : -v1-1);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
// Create inverse map
|
||||
std::map<int, int> rpkv_to_ukv;
|
||||
for (int i = 0; i < ukv_to_rpkv.Size(); i++)
|
||||
{
|
||||
rpkv_to_ukv[ukv_to_rpkv[i]] = i;
|
||||
}
|
||||
|
||||
passes++;
|
||||
}
|
||||
while (corrections > 0 && passes < GetNE() + 1);
|
||||
|
||||
// Check the validity of corrections applied
|
||||
if (corrections > 0)
|
||||
{
|
||||
mfem::err<<"Edge_to_knot mapping potentially incorrect"<<endl;
|
||||
mfem::err<<" passes = "<<passes<<endl;
|
||||
mfem::err<<" corrections = "<<corrections<<endl;
|
||||
}
|
||||
|
||||
/* Renumber knotvectors, such that:
|
||||
-- numbering is consecutive
|
||||
-- starts at zero */
|
||||
Array<int> cnt(NumOfEdges);
|
||||
cnt = 0;
|
||||
for (j = 0; j < NumOfEdges; j++)
|
||||
{
|
||||
k = edge_to_knot[j];
|
||||
cnt[(k >= 0 ? k : -k-1)]++;
|
||||
}
|
||||
|
||||
k = 0;
|
||||
for (j = 0; j < cnt.Size(); j++)
|
||||
{
|
||||
cnt[j] = (cnt[j] > 0 ? k++ : -1);
|
||||
}
|
||||
|
||||
for (j = 0; j < NumOfEdges; j++)
|
||||
{
|
||||
k = edge_to_knot[j];
|
||||
edge_to_knot[j] = (k >= 0 ? cnt[k]:-cnt[-k-1]-1);
|
||||
}
|
||||
|
||||
// Print knot to edge mapping
|
||||
mfem::out<<"Generated edge to knot mapping:"<<endl;
|
||||
for (j = 0; j < NumOfEdges; j++)
|
||||
{
|
||||
int *v = edge_vertex->GetRow(j);
|
||||
k = edge_to_knot[j];
|
||||
|
||||
v0 = v[0];
|
||||
v1 = v[1];
|
||||
if (k < 0)
|
||||
{
|
||||
v[0] = v1;
|
||||
v[1] = v0;
|
||||
}
|
||||
mfem::out<<(k >= 0 ? k:-k-1)<<" "<< v[0] <<" "<<v[1]<<endl;
|
||||
}
|
||||
|
||||
// Terminate here upon failure after printing to have an idea of edge_to_knot.
|
||||
if (corrections > 0 ) {mfem_error("Mesh::LoadPatchTopo");}
|
||||
// Get edge_to_ukv = edge_to_pkv -> pkv_to_rpkv -> rpkv_to_ukv
|
||||
edge_to_ukv.SetSize(NumOfEdges);
|
||||
for (int i = 0; i < NumOfEdges; i++)
|
||||
{
|
||||
const int pkv = unsign(edge_to_pkv[i]);
|
||||
const int rpkv = pkv_to_rpkv[pkv];
|
||||
const int ukv = rpkv_to_ukv[rpkv];
|
||||
edge_to_ukv[i] = (edge_to_pkv[i] < 0) ? sign(ukv) : ukv;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
+42
-9
@@ -39,6 +39,7 @@ namespace mfem
|
||||
class GeometricFactors;
|
||||
class FaceGeometricFactors;
|
||||
class KnotVector;
|
||||
class NURBSPatch;
|
||||
class NURBSExtension;
|
||||
class FiniteElementSpace;
|
||||
class GridFunction;
|
||||
@@ -472,7 +473,7 @@ protected:
|
||||
const int *fine, int nfine, int op);
|
||||
|
||||
/// Read NURBS patch/macro-element mesh
|
||||
void LoadPatchTopo(std::istream &input, Array<int> &edge_to_knot);
|
||||
void LoadPatchTopo(std::istream &input, Array<int> &edge_to_ukv);
|
||||
|
||||
void UpdateNURBS();
|
||||
|
||||
@@ -587,9 +588,10 @@ protected:
|
||||
void Loader(std::istream &input, int generate_edges = 0,
|
||||
std::string parse_tag = "");
|
||||
|
||||
/** If NURBS mesh, write NURBS format. If NCMesh, write mfem v1.1 format.
|
||||
If section_delimiter is empty, write mfem v1.0 format. Otherwise, write
|
||||
mfem v1.2 format with the given section_delimiter at the end.
|
||||
/** @brief If NURBS mesh, write NURBS format. If NCMesh, write mfem v1.1
|
||||
format. If section_delimiter is empty, write mfem v1.0 format. Otherwise,
|
||||
write mfem v1.2 format with the given section_delimiter at the end.
|
||||
|
||||
If @a comments is non-empty, it will be printed after the first line of
|
||||
the file, and each line should begin with '#'. */
|
||||
void Printer(std::ostream &os = mfem::out,
|
||||
@@ -789,6 +791,29 @@ public:
|
||||
/// Destroys Mesh.
|
||||
virtual ~Mesh() { DestroyPointers(); }
|
||||
|
||||
/** Get the edge to unique knotvector map used by NURBS patch topology meshes
|
||||
Various index maps are defined using the following indices:
|
||||
|
||||
edge: Edge index in the patch topology mesh
|
||||
pkv: Patch knotvector index, equivalent to (p * dim + d) where
|
||||
p is the patch index, dim is the topological dimension of
|
||||
the patch, and d is the local dimension
|
||||
rpkv: Root patch knotvector index; the lowest index pkv for all
|
||||
equivalent pkv.
|
||||
ukv: (signed) Unique knotvector index. Equivalent to rpkv reordered
|
||||
from 0 to N-1, where N is the number of unique knotvectors +
|
||||
sign, which indicates the orientation of the edge.
|
||||
@param[in,out] edge_to_ukv Array<int> Map from edge index to (signed)
|
||||
unique knotvector index. Will be resized
|
||||
to the number of edges.
|
||||
@param[in,out] ukv_to_rpkv Array<int> Map from (unsigned) unique
|
||||
knotvector index to the (unsigned) root
|
||||
patch knotvector index. Will be resized
|
||||
to the number of unique knotvectors.
|
||||
*/
|
||||
void GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
|
||||
Array<int> &ukv_to_rpkv) const;
|
||||
|
||||
/// @}
|
||||
|
||||
/** @anchor mfem_Mesh_named_ctors @name Named mesh constructors.
|
||||
@@ -1435,6 +1460,12 @@ public:
|
||||
/// Set the attribute of patch boundary element i, for a NURBS mesh.
|
||||
void SetPatchBdrAttribute(int i, int attr);
|
||||
|
||||
/** Returns a deep copy of all patches. This method is not const
|
||||
as it first sets the patches in NURBSext using control points
|
||||
defined by Nodes. Caller gets ownership of the returned object,
|
||||
and is responsible for deletion.*/
|
||||
void GetNURBSPatches(Array<NURBSPatch*> &patches);
|
||||
|
||||
/// Returns the type of element i.
|
||||
Element::Type GetElementType(int i) const;
|
||||
|
||||
@@ -2452,10 +2483,12 @@ public:
|
||||
/// Print the mesh to the given stream using Netgen/Truegrid format.
|
||||
virtual void PrintXG(std::ostream &os = mfem::out) const;
|
||||
|
||||
/// Print the mesh to the given stream using the default MFEM mesh format.
|
||||
/// \see mfem::ofgzstream() for on-the-fly compression of ascii outputs. If
|
||||
/// @a comments is non-empty, it will be printed after the first line of the
|
||||
/// file, and each line should begin with '#'.
|
||||
/** @brief Print the mesh to the given stream using the default MFEM mesh
|
||||
format.
|
||||
|
||||
\see mfem::ofgzstream() for on-the-fly compression of ascii outputs. If
|
||||
@a comments is non-empty, it will be printed after the first line of the
|
||||
file, and each line should begin with '#'. */
|
||||
virtual void Print(std::ostream &os = mfem::out,
|
||||
const std::string &comments = "") const
|
||||
{ Printer(os, "", comments); }
|
||||
@@ -2507,7 +2540,7 @@ public:
|
||||
|
||||
#ifdef MFEM_USE_NETCDF
|
||||
/// @brief Export a mesh to an Exodus II file.
|
||||
void PrintExodusII(const std::string fpath);
|
||||
void PrintExodusII(const std::string &fpath);
|
||||
#endif
|
||||
|
||||
/** @brief Prints the mesh with boundary elements given by the boundary of
|
||||
|
||||
+3
-13
@@ -802,21 +802,11 @@ struct BufferReader : BufferReaderBase
|
||||
{
|
||||
// Each "data block" is preceded by a header that is either UInt32 or
|
||||
// UInt64. The rest of the data follows.
|
||||
uint64_t data_size;
|
||||
if (header_type == UINT32_HEADER)
|
||||
{
|
||||
uint32_t *data_size_32 = (uint32_t *)header_buf;
|
||||
data_size = *data_size_32;
|
||||
}
|
||||
else
|
||||
{
|
||||
uint64_t *data_size_64 = (uint64_t *)header_buf;
|
||||
data_size = *data_size_64;
|
||||
}
|
||||
MFEM_VERIFY(sizeof(F)*n == data_size, "AppendedData: wrong data size");
|
||||
MFEM_VERIFY(sizeof(F)*n == ReadHeaderEntry(header_buf),
|
||||
"AppendedData: wrong data size");
|
||||
}
|
||||
|
||||
if (std::is_same<T, F>::value)
|
||||
if (std::is_same_v<T, F>)
|
||||
{
|
||||
// Special case: no type conversions necessary, so can just memcpy
|
||||
memcpy(dest, buf, sizeof(T)*n);
|
||||
|
||||
+159
-86
@@ -9,8 +9,13 @@
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "mesh_headers.hpp"
|
||||
#include "../fem/fem.hpp"
|
||||
#include "nurbs.hpp"
|
||||
|
||||
#include "point.hpp"
|
||||
#include "segment.hpp"
|
||||
#include "quadrilateral.hpp"
|
||||
#include "hexahedron.hpp"
|
||||
#include "../fem/gridfunc.hpp"
|
||||
#include "../general/text.hpp"
|
||||
|
||||
#include <fstream>
|
||||
@@ -33,6 +38,7 @@ KnotVector::KnotVector(istream &input)
|
||||
|
||||
knot.Load(input, NumOfControlPoints + Order + 1);
|
||||
GetElements();
|
||||
coarse = false;
|
||||
}
|
||||
|
||||
KnotVector::KnotVector(int order, int NCP)
|
||||
@@ -41,12 +47,13 @@ KnotVector::KnotVector(int order, int NCP)
|
||||
NumOfControlPoints = NCP;
|
||||
knot.SetSize(NumOfControlPoints + Order + 1);
|
||||
NumOfElements = 0;
|
||||
coarse = false;
|
||||
|
||||
knot = -1.;
|
||||
}
|
||||
|
||||
KnotVector::KnotVector(int order, const Vector& intervals,
|
||||
const Array<int>& continuity )
|
||||
const Array<int>& continuity)
|
||||
{
|
||||
// NOTE: This may need to be generalized to support periodicity
|
||||
// in the future.
|
||||
@@ -86,6 +93,7 @@ KnotVector::KnotVector(int order, const Vector& intervals,
|
||||
++NumOfElements;
|
||||
}
|
||||
}
|
||||
coarse = false;
|
||||
}
|
||||
|
||||
KnotVector &KnotVector::operator=(const KnotVector &kv)
|
||||
@@ -143,7 +151,7 @@ void KnotVector::UniformRefinement(Vector &newknots, int rf) const
|
||||
{
|
||||
for (int m = 1; m < rf; ++m)
|
||||
{
|
||||
newknots(j) = m * h * (knot(i) + knot(i+1));
|
||||
newknots(j) = ((1.0 - (m * h)) * knot(i)) + (m * h * knot(i+1));
|
||||
j++;
|
||||
}
|
||||
}
|
||||
@@ -332,7 +340,7 @@ void KnotVector::PrintFunctions(std::ostream &os, int samples) const
|
||||
}
|
||||
}
|
||||
|
||||
// Routine from "The NURBS book" - 2nd ed - Piegl and Tiller
|
||||
// Routine from "The NURBS Book" - 2nd ed - Piegl and Tiller
|
||||
// Algorithm A2.2 p. 70
|
||||
void KnotVector::CalcShape(Vector &shape, int i, real_t xi) const
|
||||
{
|
||||
@@ -359,7 +367,7 @@ void KnotVector::CalcShape(Vector &shape, int i, real_t xi) const
|
||||
}
|
||||
}
|
||||
|
||||
// Routine from "The NURBS book" - 2nd ed - Piegl and Tiller
|
||||
// Routine from "The NURBS Book" - 2nd ed - Piegl and Tiller
|
||||
// Algorithm A2.3 p. 72
|
||||
void KnotVector::CalcDShape(Vector &grad, int i, real_t xi) const
|
||||
{
|
||||
@@ -417,7 +425,7 @@ void KnotVector::CalcDShape(Vector &grad, int i, real_t xi) const
|
||||
}
|
||||
}
|
||||
|
||||
// Routine from "The NURBS book" - 2nd ed - Piegl and Tiller
|
||||
// Routine from "The NURBS Book" - 2nd ed - Piegl and Tiller
|
||||
// Algorithm A2.3 p. 72
|
||||
void KnotVector::CalcDnShape(Vector &gradn, int n, int i, real_t xi) const
|
||||
{
|
||||
@@ -537,11 +545,11 @@ void KnotVector::FindMaxima(Array<int> &ks, Vector &xi, Vector &u) const
|
||||
int i = j - d;
|
||||
if (isElement(i))
|
||||
{
|
||||
arg1 = 1e-16;
|
||||
arg1 = std::numeric_limits<real_t>::epsilon() / 2_r;
|
||||
CalcShape(shape, i, arg1);
|
||||
max1 = shape[d];
|
||||
|
||||
arg2 = 1-(1e-16);
|
||||
arg2 = 1_r - arg1;
|
||||
CalcShape(shape, i, arg2);
|
||||
max2 = shape[d];
|
||||
|
||||
@@ -579,9 +587,9 @@ void KnotVector::FindMaxima(Array<int> &ks, Vector &xi, Vector &u) const
|
||||
}
|
||||
}
|
||||
|
||||
// Routine from "The NURBS book" - 2nd ed - Piegl and Tiller
|
||||
// Routine from "The NURBS Book" - 2nd ed - Piegl and Tiller
|
||||
// Algorithm A9.1 p. 369
|
||||
void KnotVector::FindInterpolant(Array<Vector*> &x)
|
||||
void KnotVector::FindInterpolant(Array<Vector*> &x, bool reuse_inverse)
|
||||
{
|
||||
int order = GetOrder();
|
||||
int ncp = GetNCP();
|
||||
@@ -589,29 +597,93 @@ void KnotVector::FindInterpolant(Array<Vector*> &x)
|
||||
// Find interpolation points
|
||||
Vector xi_args, u_args;
|
||||
Array<int> i_args;
|
||||
FindMaxima(i_args,xi_args, u_args);
|
||||
FindMaxima(i_args, xi_args, u_args);
|
||||
|
||||
// Assemble collocation matrix
|
||||
Vector shape(order+1);
|
||||
DenseMatrix A(ncp,ncp);
|
||||
A = 0.0;
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
// If using LAPACK, we use banded matrix storage (order + 1 nonzeros per row).
|
||||
// Find banded structure of matrix.
|
||||
int KL = 0; // Number of subdiagonals
|
||||
int KU = 0; // Number of superdiagonals
|
||||
for (int i = 0; i < ncp; i++)
|
||||
{
|
||||
CalcShape(shape, i_args[i], xi_args[i]);
|
||||
for (int p = 0; p < order+1; p++)
|
||||
{
|
||||
A(i,i_args[i] + p) = shape[p];
|
||||
const int col = i_args[i] + p;
|
||||
if (col < i)
|
||||
{
|
||||
KL = std::max(KL, i - col);
|
||||
}
|
||||
else if (i < col)
|
||||
{
|
||||
KU = std::max(KU, col - i);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Solve problems
|
||||
A.Invert();
|
||||
const int LDAB = (2*KL) + KU + 1;
|
||||
const int N = ncp;
|
||||
|
||||
fact_AB.SetSize(LDAB, N);
|
||||
#else
|
||||
// Without LAPACK, we store and invert a DenseMatrix (inefficient).
|
||||
if (!reuse_inverse)
|
||||
{
|
||||
A_coll_inv.SetSize(ncp, ncp);
|
||||
A_coll_inv = 0.0;
|
||||
}
|
||||
#endif
|
||||
|
||||
Vector shape(order+1);
|
||||
|
||||
if (!reuse_inverse) // Set collocation matrix entries
|
||||
{
|
||||
for (int i = 0; i < ncp; i++)
|
||||
{
|
||||
CalcShape(shape, i_args[i], xi_args[i]);
|
||||
for (int p = 0; p < order+1; p++)
|
||||
{
|
||||
const int j = i_args[i] + p;
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
fact_AB(KL+KU+i-j,j) = shape[p];
|
||||
#else
|
||||
A_coll_inv(i,j) = shape[p];
|
||||
#endif
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Solve the system
|
||||
#ifdef MFEM_USE_LAPACK
|
||||
const int NRHS = x.Size();
|
||||
DenseMatrix B(N, NRHS);
|
||||
for (int j=0; j<NRHS; ++j)
|
||||
{
|
||||
for (int i=0; i<N; ++i) { B(i, j) = (*x[j])[i]; }
|
||||
}
|
||||
|
||||
if (reuse_inverse)
|
||||
{
|
||||
BandedFactorizedSolve(KL, KU, fact_AB, B, false, fact_ipiv);
|
||||
}
|
||||
else
|
||||
{
|
||||
BandedSolve(KL, KU, fact_AB, B, fact_ipiv);
|
||||
}
|
||||
|
||||
for (int j=0; j<NRHS; ++j)
|
||||
{
|
||||
for (int i=0; i<N; ++i) { (*x[j])[i] = B(i, j); }
|
||||
}
|
||||
#else
|
||||
if (!reuse_inverse) { A_coll_inv.Invert(); }
|
||||
Vector tmp;
|
||||
for (int i= 0; i < x.Size(); i++)
|
||||
for (int i = 0; i < x.Size(); i++)
|
||||
{
|
||||
tmp = *x[i];
|
||||
A.Mult(tmp,*x[i]);
|
||||
A_coll_inv.Mult(tmp, *x[i]);
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
int KnotVector::findKnotSpan(real_t u) const
|
||||
@@ -1413,7 +1485,7 @@ void NURBSPatch::DegreeElevate(int t)
|
||||
}
|
||||
}
|
||||
|
||||
// Routine from "The NURBS book" - 2nd ed - Piegl and Tiller
|
||||
// Routine from "The NURBS Book" - 2nd ed - Piegl and Tiller
|
||||
void NURBSPatch::DegreeElevate(int dir, int t)
|
||||
{
|
||||
if (dir >= kv.Size() || dir < 0)
|
||||
@@ -1431,8 +1503,8 @@ void NURBSPatch::DegreeElevate(int dir, int t)
|
||||
KnotVector &oldkv = *kv[dir];
|
||||
oldkv.GetElements();
|
||||
|
||||
NURBSPatch *newpatch = new NURBSPatch(this, dir, oldkv.GetOrder() + t,
|
||||
oldkv.GetNCP() + oldkv.GetNE()*t);
|
||||
auto *newpatch = new NURBSPatch(this, dir, oldkv.GetOrder() + t,
|
||||
oldkv.GetNCP() + oldkv.GetNE()*t);
|
||||
NURBSPatch &newp = *newpatch;
|
||||
KnotVector &newkv = *newp.GetKV(dir);
|
||||
|
||||
@@ -1984,7 +2056,7 @@ NURBSExtension::NURBSExtension(const NURBSExtension &orig)
|
||||
activeDof(orig.activeDof),
|
||||
patchTopo(new Mesh(*orig.patchTopo)),
|
||||
own_topo(true),
|
||||
edge_to_knot(orig.edge_to_knot),
|
||||
edge_to_ukv(orig.edge_to_ukv),
|
||||
knotVectors(orig.knotVectors.Size()), // knotVectors are copied in the body
|
||||
knotVectorsCompr(orig.knotVectorsCompr.Size()),
|
||||
weights(orig.weights),
|
||||
@@ -2025,7 +2097,7 @@ NURBSExtension::NURBSExtension(std::istream &input, bool spacing)
|
||||
{
|
||||
// Read topology
|
||||
patchTopo = new Mesh;
|
||||
patchTopo->LoadPatchTopo(input, edge_to_knot);
|
||||
patchTopo->LoadPatchTopo(input, edge_to_ukv);
|
||||
own_topo = true;
|
||||
|
||||
CheckPatches();
|
||||
@@ -2227,7 +2299,7 @@ NURBSExtension::NURBSExtension(NURBSExtension *parent, int newOrder)
|
||||
patchTopo = parent->patchTopo;
|
||||
own_topo = false;
|
||||
|
||||
parent->edge_to_knot.Copy(edge_to_knot);
|
||||
parent->edge_to_ukv.Copy(edge_to_ukv);
|
||||
|
||||
NumOfKnotVectors = parent->GetNKV();
|
||||
knotVectors.SetSize(NumOfKnotVectors);
|
||||
@@ -2285,7 +2357,7 @@ NURBSExtension::NURBSExtension(NURBSExtension *parent,
|
||||
patchTopo = parent->patchTopo;
|
||||
own_topo = false;
|
||||
|
||||
parent->edge_to_knot.Copy(edge_to_knot);
|
||||
parent->edge_to_ukv.Copy(edge_to_ukv);
|
||||
|
||||
NumOfKnotVectors = parent->GetNKV();
|
||||
MFEM_VERIFY(mOrders.Size() == NumOfKnotVectors, "invalid newOrders array");
|
||||
@@ -2344,7 +2416,7 @@ NURBSExtension::NURBSExtension(Mesh *mesh_array[], int num_pieces)
|
||||
own_topo = true;
|
||||
parent->own_topo = false;
|
||||
|
||||
parent->edge_to_knot.Copy(edge_to_knot);
|
||||
parent->edge_to_ukv.Copy(edge_to_ukv);
|
||||
|
||||
parent->GetOrders().Copy(mOrders);
|
||||
mOrder = parent->GetOrder();
|
||||
@@ -2377,70 +2449,61 @@ NURBSExtension::NURBSExtension(Mesh *mesh_array[], int num_pieces)
|
||||
}
|
||||
|
||||
NURBSExtension::NURBSExtension(const Mesh *patch_topology,
|
||||
const Array<const NURBSPatch*> p)
|
||||
const Array<const NURBSPatch*> &patches_)
|
||||
{
|
||||
// Basic topology checks
|
||||
MFEM_VERIFY(patches_.Size() > 0, "Must have at least one patch");
|
||||
MFEM_VERIFY(patches_.Size() == patch_topology->GetNE(),
|
||||
"Number of patches must equal number of elements in patch_topology");
|
||||
|
||||
// Copy patch_topology mesh and NURBSPatch(es)
|
||||
patchTopo = new Mesh( *patch_topology );
|
||||
patchTopo->GetEdgeVertexTable();
|
||||
own_topo = 1;
|
||||
patches.Reserve(p.Size());
|
||||
Array<int> edges;
|
||||
Array<int> oedges;
|
||||
Array<int> kvs(3);
|
||||
edge_to_knot.SetSize(patch_topology->GetNEdges());
|
||||
NumOfKnotVectors = 0;
|
||||
NumOfElements = 0;
|
||||
for (int ielem = 0; ielem < patch_topology->GetNE(); ++ielem)
|
||||
patches.SetSize(patches_.Size());
|
||||
for (int p = 0; p < patches.Size(); p++)
|
||||
{
|
||||
patches.Append(new NURBSPatch(*p[ielem]));
|
||||
NURBSPatch& patch = *patches[ielem];
|
||||
int num_patch_elems = 1;
|
||||
for (int ikv = 0; ikv < patch.GetNKV(); ++ikv)
|
||||
{
|
||||
kvs[ikv] = knotVectors.Size();
|
||||
knotVectors.Append(new KnotVector(*patch.GetKV(ikv)));
|
||||
num_patch_elems *= patch.GetKV(ikv)->GetNE();
|
||||
++NumOfKnotVectors;
|
||||
}
|
||||
NumOfElements += num_patch_elems;
|
||||
patch_topology->GetElementEdges(ielem, edges, oedges);
|
||||
for (int iedge = 0; iedge < edges.Size(); ++iedge)
|
||||
{
|
||||
if (iedge < 8)
|
||||
{
|
||||
if (iedge & 1)
|
||||
{
|
||||
edge_to_knot[edges[iedge]] = kvs[1];
|
||||
}
|
||||
else
|
||||
{
|
||||
edge_to_knot[edges[iedge]] = kvs[0];
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
edge_to_knot[edges[iedge]] = kvs[2];
|
||||
}
|
||||
}
|
||||
patches[p] = new NURBSPatch(*patches_[p]);
|
||||
}
|
||||
|
||||
GenerateOffsets();
|
||||
CountBdrElements();
|
||||
NumOfActiveElems = NumOfElements;
|
||||
activeElem.SetSize(NumOfElements);
|
||||
activeElem = true;
|
||||
Array<int> ukv_to_rpkv;
|
||||
patchTopo->GetEdgeToUniqueKnotvector(edge_to_ukv, ukv_to_rpkv);
|
||||
own_topo = true;
|
||||
|
||||
CheckPatches(); // This is checking the edge_to_ukv mapping
|
||||
|
||||
// Set number of unique (not comprehensive) knot vectors
|
||||
NumOfKnotVectors = ukv_to_rpkv.Size();
|
||||
knotVectors.SetSize(NumOfKnotVectors);
|
||||
knotVectors = NULL;
|
||||
|
||||
// Assign the unique knot vectors from patches
|
||||
for (int i = 0; i < NumOfKnotVectors; i++)
|
||||
{
|
||||
// pkv = p*dim + d for an arbitrarily chosen patch p,
|
||||
// in its reference direction d
|
||||
const int pkv = ukv_to_rpkv[i];
|
||||
const int p = pkv / Dimension();
|
||||
const int d = pkv % Dimension();
|
||||
knotVectors[i] = new KnotVector(*patches[p]->GetKV(d));
|
||||
}
|
||||
|
||||
CreateComprehensiveKV();
|
||||
SetOrdersFromKnotVectors();
|
||||
|
||||
GenerateOffsets();
|
||||
CountElements();
|
||||
CountBdrElements();
|
||||
|
||||
NumOfActiveElems = NumOfElements;
|
||||
activeElem.SetSize(NumOfElements);
|
||||
activeElem = true;
|
||||
|
||||
GenerateActiveVertices();
|
||||
InitDofMap();
|
||||
GenerateElementDofTable();
|
||||
GenerateActiveBdrElems();
|
||||
GenerateBdrElementDofTable();
|
||||
|
||||
weights.SetSize(GetNDof());
|
||||
|
||||
CheckPatches();
|
||||
ConnectBoundaries();
|
||||
}
|
||||
|
||||
NURBSExtension::~NURBSExtension()
|
||||
@@ -2481,7 +2544,7 @@ void NURBSExtension::Print(std::ostream &os, const std::string &comments) const
|
||||
}
|
||||
|
||||
const int version = kvSpacing.Size() > 0 ? 11 : 10; // v1.0 or v1.1
|
||||
patchTopo->PrintTopo(os, edge_to_knot, version, comments);
|
||||
patchTopo->PrintTopo(os, edge_to_ukv, version, comments);
|
||||
if (patches.Size() == 0)
|
||||
{
|
||||
os << "\nknotvectors\n" << NumOfKnotVectors << '\n';
|
||||
@@ -2936,7 +2999,7 @@ void NURBSExtension::CheckPatches()
|
||||
|
||||
for (int i = 0; i < edges.Size(); i++)
|
||||
{
|
||||
edges[i] = edge_to_knot[edges[i]];
|
||||
edges[i] = edge_to_ukv[edges[i]];
|
||||
if (oedge[i] < 0)
|
||||
{
|
||||
edges[i] = -1 - edges[i];
|
||||
@@ -2954,7 +3017,7 @@ void NURBSExtension::CheckPatches()
|
||||
edges[8] != edges[11])))
|
||||
{
|
||||
mfem::err << "NURBSExtension::CheckPatch (patch = " << p
|
||||
<< ")\n Inconsistent edge-to-knot mapping!\n";
|
||||
<< ")\n Inconsistent edge-to-knotvector mapping!";
|
||||
mfem_error();
|
||||
}
|
||||
}
|
||||
@@ -2971,7 +3034,7 @@ void NURBSExtension::CheckBdrPatches()
|
||||
|
||||
for (int i = 0; i < edges.Size(); i++)
|
||||
{
|
||||
edges[i] = edge_to_knot[edges[i]];
|
||||
edges[i] = edge_to_ukv[edges[i]];
|
||||
if (oedge[i] < 0)
|
||||
{
|
||||
edges[i] = -1 - edges[i];
|
||||
@@ -4596,7 +4659,7 @@ void NURBSExtension::KnotInsert(Array<Vector *> &kv)
|
||||
|
||||
// Flip vector
|
||||
int size = pkvc[d]->Size();
|
||||
int ns = ceil(size/2.0);
|
||||
int ns = static_cast<int>(ceil(size/2.0));
|
||||
for (int j = 0; j < ns; j++)
|
||||
{
|
||||
real_t tmp = apb - pkvc[d]->Elem(j);
|
||||
@@ -4656,7 +4719,7 @@ void NURBSExtension::KnotRemove(Array<Vector *> &kv, real_t tol)
|
||||
|
||||
// Flip vector
|
||||
int size = pkvc[d]->Size();
|
||||
int ns = ceil(size/2.0);
|
||||
int ns = static_cast<int>(ceil(size/2.0));
|
||||
for (int j = 0; j < ns; j++)
|
||||
{
|
||||
real_t tmp = apb - pkvc[d]->Elem(j);
|
||||
@@ -4878,6 +4941,16 @@ void NURBSExtension::GetElementIJK(int elem, Array<int> & ijk)
|
||||
el_to_IJK.GetRow(elem, ijk);
|
||||
}
|
||||
|
||||
void NURBSExtension::GetPatches(Array<NURBSPatch*> &patches_copy)
|
||||
{
|
||||
const int NP = patches.Size();
|
||||
patches_copy.SetSize(NP);
|
||||
for (int p = 0; p < NP; p++)
|
||||
{
|
||||
patches_copy[p] = new NURBSPatch(*GetPatch(p));
|
||||
}
|
||||
}
|
||||
|
||||
void NURBSExtension::SetPatchToElements()
|
||||
{
|
||||
const int np = GetNP();
|
||||
@@ -4982,7 +5055,7 @@ ParNURBSExtension::ParNURBSExtension(MPI_Comm comm, NURBSExtension *parent,
|
||||
own_topo = true;
|
||||
parent->own_topo = false;
|
||||
|
||||
parent->edge_to_knot.Copy(edge_to_knot);
|
||||
parent->edge_to_ukv.Copy(edge_to_ukv);
|
||||
|
||||
parent->GetOrders().Copy(mOrders);
|
||||
mOrder = parent->GetOrder();
|
||||
@@ -5045,7 +5118,7 @@ ParNURBSExtension::ParNURBSExtension(NURBSExtension *parent,
|
||||
own_topo = parent->own_topo;
|
||||
parent->own_topo = false;
|
||||
|
||||
Swap(edge_to_knot, parent->edge_to_knot);
|
||||
Swap(edge_to_ukv, parent->edge_to_ukv);
|
||||
|
||||
NumOfKnotVectors = parent->NumOfKnotVectors;
|
||||
Swap(knotVectors, parent->knotVectors);
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user