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Author SHA1 Message Date
Stowell, Mark L. e2d68264e6 Merge remote-tracking branch 'origin/eigensolvers-dev' into arpack-dev 2026-04-29 12:12:31 -07:00
Mark L. Stowell 8bf2b3f061 Merge branch 'master' into eigensolvers-dev 2026-04-29 12:03:54 -07:00
Tzanio Kolev e52948f9e5 Merge pull request #4714 from mfem/dc-ofstream-fix-minor
Verify that `ofstream` is open
2026-04-29 08:18:43 -06:00
Stowell, Mark L. 933ddce17a Removing ex11 and ex13 from cmake build when ARPACK is not available 2026-04-29 00:22:35 -07:00
Stowell, Mark L. 085557f02b Modifying ex11p to new API 2026-04-28 17:22:36 -07:00
Stowell, Mark L. 2544bab0aa Adapting serial examples to modified API 2026-04-28 17:18:57 -07:00
Stowell, Mark L. bea4a8bae0 Merge remote-tracking branch 'origin/eigensolvers-dev' into arpack-dev 2026-04-28 15:59:48 -07:00
Veselin Dobrev c860bf20ea Merge pull request #5294 from mfem/bugfix/lorentz-test-runs
Fixing typos in lorentz miniapp test runs
2026-04-28 15:47:46 -07:00
Stowell, Mark L. 31dc0b5322 Simplifying inheritance hierarchy 2026-04-28 15:18:12 -07:00
Tzanio Kolev 7ff0bd3bb0 Merge branch 'master' into dc-ofstream-fix-minor 2026-04-26 14:30:17 -06:00
Stowell, Mark L. 18ca696093 Merge remote-tracking branch 'origin/eigensolvers-dev' into arpack-dev
# Conflicts:
#	linalg/eigensolvers.hpp
2026-04-24 13:52:49 -07:00
Stowell, Mark L. c441b28b01 Merge remote-tracking branch 'origin/eigensolvers-dev' into arpack-dev 2026-04-24 13:48:10 -07:00
Stowell, Mark L. 125e182a05 Merge remote-tracking branch 'origin/master' into eigensolvers-dev 2026-04-24 13:47:04 -07:00
Stowell, Mark L. 3dc8e4d98e Provide eight variants of eigensolver for easier inheritance 2026-04-24 13:46:38 -07:00
Stowell, Mark L. b947d34583 Make it stop! 2026-04-24 11:05:08 -07:00
Stowell, Mark L. 862e527539 Disabling ex11 and ex13 builds when ARPACK is not available 2026-04-24 11:01:25 -07:00
Stowell, Mark L. 297d7eabd6 Merge remote-tracking branch 'origin/eigensolvers-dev' into arpack-dev 2026-04-24 10:03:41 -07:00
Stowell, Mark L. 86f214bdc6 When will it end? 2026-04-24 10:02:03 -07:00
Stowell, Mark L. 8420384555 Disabling ex13 when ARPACK is unavailable 2026-04-24 09:48:24 -07:00
Stowell, Mark L. f158717ae5 Disabling ex11 if ARPACK is not available 2026-04-24 07:27:25 -07:00
Stowell, Mark L. 3a645d61b2 Yet another explicit Distribute 2026-04-24 07:17:08 -07:00
Stowell, Mark L. ac86240cd8 Tweaking ex11p 2026-04-23 17:41:55 -07:00
Stowell, Mark L. 8c7f47ee71 Cleanup 2026-04-23 16:13:57 -07:00
Stowell, Mark L. 8a9d4e94cf Merge remote-tracking branch 'origin/eigensolvers-dev' into arpack-dev
# Conflicts:
#	examples/ex11p.cpp
#	linalg/eigensolvers.hpp
#	linalg/hypre.cpp
#	linalg/hypre.hpp
2026-04-23 16:09:06 -07:00
Stowell, Mark L. 224345b00c One more explicit Distribute 2026-04-23 15:59:16 -07:00
Stowell, Mark L. 6ee0947d03 Adding explicit Distribute 2026-04-23 15:14:40 -07:00
Stowell, Mark L. b82f870350 Adding missing overrides 2026-04-23 12:56:05 -07:00
Stowell, Mark L. 819a262bd3 make style 2026-04-23 11:20:13 -07:00
Stowell, Mark L. 10a017a62d Modifying hypre eigensolvers to fit the proposed interface 2026-04-23 11:19:53 -07:00
Stowell, Mark L. b82ec338c5 Adding references to new header 2026-04-23 10:44:25 -07:00
Stowell, Mark L. 90ebbb469c Suggestion for eigensolver base classes 2026-04-23 10:42:55 -07:00
Veselin Dobrev 3e31395f85 Fix another minor compiler warning.
Update the CMake tests in miniapps/electromagnetics to match the makefile.
2026-04-21 23:39:11 -07:00
Tzanio Kolev b2de4c4ba1 Merge pull request #5239 from nmnobre/ir
A few small fixes and feature additions
2026-04-21 12:27:07 -06:00
Stowell, Mark L. 32318eaf75 One more file header 2026-04-19 14:47:30 -07:00
Stowell, Mark L. 98d80620bf Updating file headers 2026-04-19 14:42:28 -07:00
Stowell, Mark L. cec5a119d1 Merge remote-tracking branch 'origin/master' into arpack-dev 2026-04-19 14:39:37 -07:00
Stowell, Mark L. 8744958c2f Attempting to standardize arguments 2026-04-19 14:38:15 -07:00
Tzanio Kolev a713e386c2 Merge pull request #5278 from mfem/fix-umpire-dep
fix CMake umpire build and install
2026-04-18 18:57:23 -06:00
Tzanio Kolev 4155b0bdda Merge pull request #4645 from mfem/ex37
Enhancements, optimization for ex37
2026-04-18 18:55:39 -06:00
Stowell, Mark L. 65b1e0addb Merge remote-tracking branch 'origin/master' into arpack-dev
# Conflicts:
#	config/config.hpp.in
#	config/defaults.mk
#	examples/ex11p.cpp
#	examples/makefile
#	linalg/CMakeLists.txt
#	linalg/hypre.cpp
#	linalg/hypre.hpp
#	linalg/linalg.hpp
#	makefile
2026-04-18 11:38:43 -07:00
Tzanio Kolev dbbd425a22 Merge pull request #5186 from mfem/particles-pic-dev-pr
Electrostatic PIC
2026-04-14 13:54:29 -06:00
Tzanio Kolev 156f338e49 Merge pull request #4626 from mfem/mfem-v13-mesh-reader-fix-issue-4625
[BUG] Fix for mfem v13 mesh format reader
2026-04-14 13:38:27 -06:00
Will Pazner 53581cb5b7 Merge pull request #5300 from mfem/fix-nvcc-static_cast-warnings
Fix nvcc warnings
2026-04-14 11:04:36 -07:00
Andrew Ho 12509fda28 Merge branch 'master' into fix-umpire-dep 2026-04-13 09:29:28 -07:00
Nuno Nobre a9b36b1e5e Merge branch 'master' into test 2026-04-13 12:05:37 +01:00
Veselin Dobrev 64ef39bbe6 Merge pull request #5291 from lindsayad/fix-petsc-b-allocation
Don't attempt to allocate B if b is non-empty in PetscNonlinearSolver
2026-04-12 19:03:40 -07:00
Veselin Dobrev 7985a225bb Fix nvcc warnings about static_cast<const int> 2026-04-12 18:11:16 -07:00
Veselin Dobrev 72f83edd53 Fix compiler warnings when GSLIB is enabled with some extra warning flags 2026-04-08 18:41:57 -07:00
Andrew Ho 6c5f513eaa Merge branch 'master' into fix-umpire-dep 2026-04-08 16:37:59 -07:00
Mark L. Stowell 75cc8433e9 Merge branch 'master' into bugfix/lorentz-test-runs 2026-04-08 15:19:45 -04:00
Veselin Dobrev f700d97549 Merge pull request #5287 from mfem/pr-4626-tweaks
Proposed tweaks for PR 4626
2026-04-08 11:16:23 -07:00
Veselin Dobrev ec39b3509c Merge pull request #5292 from mfem/saveAsOneAttrs
Propagate named attribute sets in ParMesh::GetSerialMesh
2026-04-08 11:13:00 -07:00
Veselin Dobrev 449ec725e2 Merge branch 'master' into particles-pic-dev-pr 2026-04-08 11:04:40 -07:00
Will Pazner 399d8e1e9b Merge pull request #5293 from mfem/ci-fix-brew-info
GitHub CI fix
2026-04-08 11:00:36 -07:00
Stowell, Mark L. 7330aca4e6 Fixing typoes in lorentz miniapp test runs 2026-04-07 21:04:13 -04:00
Veselin Dobrev 9ebfcf05af In the electrostatic PIC miniapp:
* Fix the out-of-source build.
* Use the same test options in CMake as in GNU make.
* Ensure the test is run from the GNU makefile.
2026-04-07 17:42:39 -07:00
Veselin Dobrev 10dbed9658 In GitHub CI, fix the parsing for the new formatting of 'brew info' 2026-04-07 17:23:31 -07:00
thatguynoe be1db1e4b7 initialize y, c, f_c 2026-04-07 20:07:28 -04:00
Noe Reyes 37fcdc1816 Merge branch 'master' into ex37 2026-04-07 19:50:41 -04:00
thatguynoe 0af98d7ff6 parameter c no longer present 2026-04-07 19:43:06 -04:00
thatguynoe cb6192167c correct assert message 2026-04-07 19:39:47 -04:00
thatguynoe bdf6aa6369 ensure root search interval is valid
We now look for a root of the function f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω) within the interval [a,b], where a := -‖αG‖_∞ and b := ‖αG‖_∞, and α and G are as in Step 4 and Step 5. It follows that f(a) ≤ ∫_Ω sigmoid(ψ + αG) dx - θ vol(Ω) ≤ f(b), and the inner quantity equals 0 since ψ_new := ψ_prev - αG in Step 5 and ∫_Ω sigmoid(ψ_new) dx - θ vol(Ω) = 0. This ensures f(a) ≤ 0 ≤ f(b), as required by the Illinois method.
2026-04-07 19:39:30 -04:00
Stowell, Mark L. da40ac4f2d Adding pic subdirectory to CMakeLists.txt as discussed in PR meeting 2026-04-07 16:51:07 -04:00
Will Pazner f09a062c04 Merge pull request #4800 from mfem/warn-gridfunc
Add VectorDim error checks for projecting coefficients onto a GridFunction
2026-04-07 11:13:31 -07:00
Alex Lindsay 0c97d6f375 Never allocate B 2026-04-06 20:21:41 -07:00
thatguynoe bff5d5e0cb correct comments 2026-04-06 22:14:46 -04:00
thatguynoe 26a152fb11 set y = 0.0 2026-04-06 22:11:14 -04:00
Veselin Dobrev aed9c8ef4a Merge pull request #5285 from mfem/uuid-fix
Fix signed char issue in Device::GetUUID
2026-04-06 15:52:32 -07:00
Veselin Dobrev e4e85e28ef Merge pull request #5289 from adam-sim-dev/fix_missing_parentheses
Fixed missing parenthesis in the comment
2026-04-06 15:43:19 -07:00
Veselin Dobrev fff973f192 Merge pull request #5246 from mfem/hughcars/simplex-quadrature-dev
Add positive-weight simplex quadrature rules for orders 0-20
2026-04-06 15:39:49 -07:00
Veselin Dobrev 775f06c43b Adjust seed values in sample runs in ex12p to ensure LOBPCG convergence in
older hypre versions.
2026-04-03 14:55:08 -07:00
schnmich 18ff1d8289 linting 2026-04-03 11:21:06 -06:00
Nuno Nobre bca03a17af Avoid unneeded overrides of ProjectDiscCoefficient 2026-04-03 18:17:43 +01:00
schnmich 5a0962c674 add attributes to GetSerialMesh 2026-04-03 11:05:03 -06:00
Ketan Mittal 6479b2607d Merge branch 'master' into particles-pic-dev-pr 2026-04-03 08:57:26 -07:00
Nuno Nobre c1de6939f9 Remove unused ThresholdRefiner member current_sequence 2026-04-03 16:14:37 +01:00
Veselin Dobrev 0d999709e6 Merge pull request #4917 from Sbozzolo/master
Improve error message for gmsh versions != 2.2
2026-04-01 20:20:15 -07:00
Veselin Dobrev 9300f47c83 Added review suggestions 2026-04-01 19:51:35 -07:00
Mittal, Ketan 75e49b217c modify top level makefile and run make style 2026-04-01 15:45:46 -07:00
Tzanio Kolev c2649eb998 Merge pull request #5245 from mfem/bugfix/chapman39/bilininteg-no-mod
bilininteg: eliminate usage of modulus to avoid llvm backend bug
2026-04-01 11:35:17 -07:00
Will Pazner a1ce49fb57 Merge pull request #5290 from mfem/ci-update-action-versions-2
Update the action `actions/cache/restore` to `v5`
2026-03-31 20:36:07 -07:00
Alex Lindsay f58cfc8170 Should not allocate B if b non-empty
Otherwise there will be an error in PlaceMemory
2026-03-31 20:25:34 -07:00
Alex Lindsay 6c837d2954 Add test of PetscNonlinearSolver with non-empty RHS 2026-03-31 20:24:22 -07:00
Veselin Dobrev 5b37c3b595 Update the action actions/cache/restore to v5 2026-03-31 16:45:21 -07:00
Andrew Ho b46baa5f5e Merge branch 'master' into fix-umpire-dep 2026-03-31 15:59:31 -07:00
Will Pazner e49f9f7988 Merge pull request #5288 from mfem/ci-update-action-versions
Update some GitHub actions to new versions
2026-03-31 11:03:48 -07:00
adam-sim-dev 7c36b55628 Fixed missing parenthesis in the comment 2026-03-31 14:29:39 +08:00
Veselin Dobrev faa73ef554 Updated the github/codeql-action/* actions to the latest, v4 2026-03-30 11:50:40 -07:00
Veselin Dobrev ecb6b06aa0 Updated actions/checkout to the latest major version, v6 2026-03-30 11:44:41 -07:00
Veselin Dobrev af4649a088 Update actions/{checkout,cache} to v5
Update github/codeql-action/* to v3
2026-03-30 10:30:31 -07:00
Andrew Ho a9f58f3982 check for null 2026-03-30 09:31:37 -07:00
Andrew Ho 6de6675783 fix compiler complaints 2026-03-30 09:04:18 -07:00
Andrew Ho 085ee02a29 compile error 2026-03-30 08:56:18 -07:00
Andrew Ho 9a124335a7 redundant checks 2026-03-30 08:53:36 -07:00
Andrew Ho 91d5e490aa Merge branch 'master' into warn-gridfunc 2026-03-30 08:53:08 -07:00
Veselin Dobrev 610196629e Merge branch 'mfem-v13-mesh-reader-fix-issue-4625' into pr-4626-tweaks 2026-03-30 00:50:29 -07:00
Veselin Dobrev 8453b4008d Merge branch 'master' into mfem-v13-mesh-reader-fix-issue-4625 2026-03-30 00:49:11 -07:00
Veselin Dobrev fab2afd8dc Proposed tweaks for PR 4626 2026-03-30 00:09:55 -07:00
Tzanio Kolev dd931b2584 Merge pull request #5219 from mfem/najlkin/project-bdr-coeff-rtnd
Projection of  scalar coefficients on RT grid functions
2026-03-29 12:53:11 -07:00
Tzanio Kolev 8a42ea2834 Merge pull request #5198 from mfem/najlkin/fix-ex22p-glvis
[BUG] Fixed visualization in example 22
2026-03-29 12:52:42 -07:00
Tzanio Kolev 24e5d5fc0a Merge pull request #4781 from mfem/najlkin/extrd-1d-vec
Extrusion of vector 1D grid functions
2026-03-29 12:51:54 -07:00
Tzanio Kolev 6722dd7a70 Merge pull request #5276 from mfem/bugfix/arrays-by-name-load
Adding bugfix and unit test which would have caught the bug
2026-03-29 12:51:15 -07:00
Tzanio Kolev cb862cbfa1 Merge pull request #5252 from mfem/assemble-face-integrator-fix
Added VDOFs transformation for boundary integration
2026-03-29 12:50:40 -07:00
Will Pazner f7445844ba Fix signed char issue in Device::GetUUID 2026-03-26 15:23:21 -07:00
Hugh Carson 672e2a442b Address PR feedback
- Use [IntegrationRules] test tag instead of [PositiveWeightRules]
- Remove redundant case 21: (default branch handles it via the overwrite guard)
- Remove trailing blank line
2026-03-26 12:18:59 -04:00
rzhangbq 3e1f10daea incorporating PR #5282 2026-03-24 21:51:15 -07:00
Veselin Dobrev 416536eb9d Merge pull request #4941 from mfem/globalvec_debug
GlobalVector bug fix
2026-03-24 12:04:48 -07:00
rzhangbq 35778347d0 resolve double-assigning b 2026-03-24 10:51:44 -07:00
Andrew Ho f557e348da removed comments 2026-03-23 14:02:52 -07:00
Andrew Ho 881598e5da also ensure boundary element is a scalar range type 2026-03-23 13:29:46 -07:00
Andrew Ho 564b7ab4ec fixed error message 2026-03-23 13:12:53 -07:00
Andrew HoandJan Nikl 3f2f925400 Update fem/gridfunc.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-03-23 13:09:37 -07:00
Jan Nikl 463e34dc7f Fixed spelling of transverse. 2026-03-23 10:33:51 -07:00
Tzanio Kolev 55e42eeefe Merge pull request #5238 from mfem/face-nbr-restr-vdim-bugfix
Fix bug in ParL2FaceRestriction with vdim > 1
2026-03-22 10:24:53 -07:00
Andrew Ho 077954d4b3 fix CMake umpire build and install 2026-03-19 13:43:48 -07:00
Stowell, Mark L. 9a456b908e Adding bugfix and unit test which would have caught the bug 2026-03-18 15:50:59 -07:00
Andrew HoandJan Nikl 616839388a Update tests/unit/fem/test_var_order.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-03-17 14:14:17 -07:00
Andrew HoandJan Nikl 2fda3db982 Update tests/unit/fem/test_var_order.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-03-17 14:13:57 -07:00
Andrew Ho 4823a33a6a fixed not checking the correct rangedim 2026-03-17 12:17:13 -07:00
Veselin Dobrev a96319e0be Small change in error message + formatting. 2026-03-17 12:16:46 -07:00
Andrew Ho 5f4283f512 fixed comment; vector coefficient is still spacedims 2026-03-17 11:37:02 -07:00
Andrew Ho 8735d28561 fixed GetPhysRangeDim and GetPhysCurlDim not being virtual 2026-03-17 11:33:55 -07:00
thatguynoe c9f7a90f81 store the diffusion global matrix 2026-03-17 13:01:43 -04:00
Noe Reyes 3b35d8210d Merge branch 'master' into ex37 2026-03-17 11:33:05 -04:00
Nuno Nobre 3babbe993b Clarify L2ZienkiewiczZhuEstimator only requires ComputeElementFlux() 2026-03-17 09:21:02 +00:00
thatguynoe 5f5421fde2 rename bool flag 2026-03-16 23:44:11 -04:00
thatguynoe 8644c8a8dd rename boundary dof extraction function 2026-03-16 18:27:26 -04:00
thatguynoe b863dd186f use MPITypeMap<real_t>::mpi_type 2026-03-16 18:15:57 -04:00
Noe ReyesandDohyun Kim 66702d831c correct return type in proj function
Co-authored-by: Dohyun Kim <dhkim.cse@gmail.com>
2026-03-16 18:12:22 -04:00
Andrew Ho a10c7a943b Merge branch 'master' into warn-gridfunc 2026-03-13 09:47:50 -07:00
Nuno Nobre 60ab6ab8f5 New Is(Par)SubMesh methods to determine descendance 2026-03-13 15:37:28 +00:00
Tzanio Kolev fa89c5e98c Merge pull request #4856 from mfem/phys-range-dim
Range and curl dimension in physical space
2026-03-13 07:44:40 -07:00
Tzanio Kolev 0980bda63b Merge pull request #5215 from balay/barry/update-for-petsc-v3.25-PetscCtx
Update to change in PETSc API (in v3.25) for PetscCtx and PetscCtxRt
2026-03-13 07:44:06 -07:00
Nuno Nobre 878df1fef2 Revert "Allow evals of GridFunctionCoefficient on submeshes"
This reverts commit 8baa46babd.
2026-03-13 11:44:50 +00:00
Will Pazner a1758e51e5 Merge remote-tracking branch 'origin/master' into face-nbr-restr-vdim-bugfix 2026-03-12 18:02:19 -07:00
Will Pazner ccf84aab7c Use constexpr in unit test 2026-03-12 18:01:40 -07:00
Hugh Carson 96eff4684f Remove unused private helper methods from IntegrationRule
AddTriPoints3R, AddTetPoints4b, and AddTetPoints12bc are no longer
called after the legacy simplex rules were removed.
2026-03-11 16:58:36 -04:00
Hugh Carson b6255fc825 Use exact fractions for trivial quadrature weights and coordinates
For rules where the mathematical value is an exact simple fraction
(midpoint weights, equal-weight symmetric rules), use the fraction
directly rather than the Polyquad decimal expansion. Cleaner to read
and avoids any rounding from decimal-to-double conversion.
2026-03-11 16:55:28 -04:00
Hugh Carson 18d27f6ffb Restore original function order in intrules.cpp
Move TriangleIntegrationRule before SquareIntegrationRule to match
the original file layout, reducing diff noise against master.
2026-03-11 16:38:01 -04:00
Hugh Carson 7bfb57ef17 Remove legacy simplex rules; positive-weight rules are now the default
The positive-weight rules now cover the full tabulated range for both
triangles (0-25) and tetrahedra (0-20), so the old rules with negative
weights are no longer needed. Remove the SimplexQuadrature enum,
simplex_type member, and legacy rule functions — all simplex quadrature
now uses positive-weight rules by default, with Grundmann-Moller
fallback for higher orders.
2026-03-11 15:25:29 -04:00
Hugh Carson ab394d795e Add existing order 21-25 triangle rule to positive-weight rules
The 126-point degree-25 rule already has all positive weights.
Copy it into TrianglePositiveIntegrationRule so the positive-weight
path covers orders 0-25.
2026-03-11 15:25:25 -04:00
Will Pazner 82abd48bba Merge pull request #5080 from mfem/cmake-config
CMake config.mk for CUDA and HIP
2026-03-11 12:18:25 -04:00
Andrew Ho cad9cc4c82 fixed checks 2026-03-10 20:56:14 -07:00
Andrew Ho 4dc741ca48 fix merge with master
still need to update bdr project coefficient checks
2026-03-10 17:11:17 -07:00
Andrew Ho 918eb114d3 Merge branch 'phys-range-dim' into warn-gridfunc 2026-03-10 16:42:15 -07:00
chapman39 3341acf0f7 add comments showing each modulus replacement 2026-03-10 15:10:51 -07:00
Tucker Hartland 287cb24d0a Merge branch 'master' into globalvec_debug 2026-03-10 11:35:19 -07:00
Andrew Ho 70370b6241 Merge branch 'master' into warn-gridfunc 2026-03-10 11:21:36 -07:00
Tzanio Kolev d4374a9d5f Merge branch 'master' into cmake-config 2026-03-10 11:08:23 -07:00
Tzanio Kolev dcd3a25730 Merge branch 'master' into barry/update-for-petsc-v3.25-PetscCtx 2026-03-10 11:01:46 -07:00
Tzanio Kolev 9fb2327be9 Merge branch 'master' into ir 2026-03-10 10:59:26 -07:00
Wouter Tonnon ea291fb157 Merge branch 'master' into assemble-face-integrator-fix 2026-03-10 11:02:32 +01:00
Wouter Tonnon fce4ae7bb0 extended to MixedBilinearForm 2026-03-10 11:00:51 +01:00
Alex Tyler Chapman ef44f047aa Merge branch 'master' into bugfix/chapman39/bilininteg-no-mod 2026-03-09 16:41:43 -07:00
chapman39 ae002f7369 added comment 2026-03-09 14:36:47 -07:00
Jan Nikl e4cd3f9e18 Merge branch 'master' into najlkin/project-bdr-coeff-rtnd 2026-03-05 14:48:38 -08:00
Mittal, Ketan 916e0b6acc Merge branch 'master' of https://github.com/mfem/mfem into particles-pic-dev-pr 2026-03-05 14:46:51 -08:00
Andrew Ho 0f99528c62 Merge branch 'master' into phys-range-dim 2026-03-05 12:45:42 -08:00
Veselin Dobrev ddfd74e899 Merge pull request #5255 from mfem/catch-tests
fix clang compiler warning for __COUNTER__
2026-03-05 12:39:29 -08:00
Mark L. Stowell 0248720eeb Merge branch 'master' into phys-range-dim 2026-03-05 09:35:14 -08:00
Andrew Ho feded39641 Merge branch 'master' into catch-tests 2026-03-05 09:28:31 -08:00
Mittal, Ketan 65d36906c7 minor 2026-03-04 20:31:06 -08:00
Paul Hilscher 327f104c53 Merge branch 'master' into mfem-v13-mesh-reader-fix-issue-4625 2026-03-05 12:20:50 +09:00
Mittal, Ketan 4f01b485df update gitignore 2026-03-04 18:44:35 -08:00
Mittal, Ketan fc7f3fddfe merge with master, resolve conflicts, and move pic inside plasma 2026-03-04 18:43:34 -08:00
Rushan ZhangandJan Nikl 937651e509 Change test case
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-03-04 18:23:35 -05:00
Rushan ZhangandJan Nikl 16d9a2c311 Update Energy computation
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-03-04 14:25:20 -05:00
Rushan ZhangandJan Nikl c652a269ca Update Energy computation
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-03-04 14:25:07 -05:00
Rushan ZhangandJan Nikl 75bb2016a9 Update Energy computation
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-03-04 14:24:35 -05:00
Rushan ZhangandJan Nikl 60d5a6cb77 Update Energy computation
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-03-04 14:24:13 -05:00
Rushan ZhangandJan Nikl 3ee5f840ce Update Energy computation
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-03-04 14:23:46 -05:00
Rushan ZhangandJan Nikl abbad56994 Update Energy computation
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-03-04 14:22:58 -05:00
Tzanio Kolev 09128b9a5d Merge pull request #5240 from mfem/bugfix/chapan39/use-mfem-abort-kernel-in-device
dfem integrate: use mfem abort kernel in device code
2026-03-04 09:55:23 -08:00
Tzanio Kolev 68383b462b Merge pull request #5231 from mfem/plasma-dir-dev
Plasma Miniapp Directory
2026-03-04 09:54:48 -08:00
Tzanio Kolev 24d5609585 Merge pull request #5212 from mfem/najlkin/fix-cmplx-assign
[BUG] Complex grid function copy assignment
2026-03-04 09:54:25 -08:00
Jan Nikl abdcf82d70 Added scalar unit test of ProjectBdrCoefficientNormal(). 2026-03-03 12:59:53 -08:00
Jan Nikl ad93d526b7 Added a unit test for vector ProjectBdrCoefficientNormal(). 2026-03-03 12:05:57 -08:00
Andrew Ho 670a3f9a45 comment on why TPL_LIBRARIES is reversed twice 2026-03-03 11:43:02 -08:00
Jan Nikl 87c1a5cb77 Made the ProjectBdrCoefficientNormal check non-debug. 2026-03-03 11:26:25 -08:00
Andrew Ho 7baae02d65 Merge remote-tracking branch 'base/cmake-config' into cmake-config 2026-03-02 16:31:18 -08:00
Andrew Ho 728a0f313b move cudart to MFEM_EXT_LIBS 2026-03-02 16:30:31 -08:00
Andrew Ho 1bb624e2a8 fix clang compiler warning for __COUNTER__ 2026-03-02 14:05:28 -08:00
Tzanio Kolev ee7ccd6464 Merge branch 'master' into plasma-dir-dev 2026-03-02 11:56:51 -08:00
Stowell, Mark L. a3ae5a6f01 Changing copyright date to pass CI checks 2026-03-02 09:22:29 -08:00
Tzanio Kolev 5ce6e90ceb Merge pull request #5253 from mfem/bugfix-nurbs-orientation
NURBS orientation bug fix
2026-03-01 11:46:34 -08:00
Tzanio Kolev 03ba184adb Merge pull request #4882 from mfem/debug-mem-silent
Add option to run debug memory backend without issuing errors
2026-03-01 11:46:15 -08:00
Tzanio Kolev cfa87477da Merge pull request #5248 from lindsayad/dont-do-math-with-enums
Don't do arithmetic with enums
2026-03-01 11:45:47 -08:00
Andrew HoandNuno Nobre 9243d00549 Update config/cmake/modules/MfemCmakeUtilities.cmake
Co-authored-by: Nuno Nobre <nuno.nobre@stfc.ac.uk>
2026-02-28 14:53:22 -08:00
Andrew HoandNuno Nobre 4fe3db5a5f Update config/cmake/modules/MfemCmakeUtilities.cmake
Co-authored-by: Nuno Nobre <nuno.nobre@stfc.ac.uk>
2026-02-28 14:53:15 -08:00
Andrew Ho 55bb710cba fixed wrong dir being marked as system 2026-02-27 14:02:24 -08:00
dylan-copeland 939932bc68 Merge branch 'master' of github.com:mfem/mfem into bugfix-nurbs-orientation 2026-02-27 13:59:37 -08:00
Tzanio Kolev d3ae34710c Merge pull request #5195 from mfem/flip-index
Index sign functions
2026-02-27 13:32:22 -08:00
Dylan Copeland 9b652996b2 Remove an unnecessary assertion. 2026-02-27 11:48:01 -08:00
Dylan Copeland 5cfbbe5fad Bug fix for NURBS orientation, when the same knotvector index is used on all edges of some patches. 2026-02-27 11:24:36 -08:00
Andrew HoandNuno Nobre 7ad6939454 Update config/cmake/modules/MfemCmakeUtilities.cmake
Co-authored-by: Nuno Nobre <nuno.nobre@stfc.ac.uk>
2026-02-27 07:06:16 -08:00
Wouter Tonnon 89ad250940 Merge branch 'master' into assemble-face-integrator-fix 2026-02-27 14:44:45 +01:00
60cc94e5a1 Update to use PetscCtxRt from (3,25,0), and cleanup duplicate code
Co-authored-by: Nuno Nobre <nuno.nobre@stfc.ac.uk>
Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2026-02-26 11:57:27 -06:00
Satish Balay 9122ac1839 update KSPMonitorFn usage for < (3,24,0) 2026-02-26 11:57:22 -06:00
Satish Balay 864186117d update PetscCtxDestroyFn usage for < (3,23,0) 2026-02-26 11:56:15 -06:00
Ketan Mittal 35de169fd0 Merge branch 'master' into plasma-dir-dev 2026-02-26 09:42:51 -08:00
Tzanio Kolev 71909cd5e3 Merge pull request #5203 from mfem/bugfix/unit-test-cout
Changing std::cout to mfem::out in unit test
2026-02-26 05:50:05 -08:00
Alex Lindsay a5a3169064 Don't do arithmetic with enums
Else with gcc 13.3 with `-std=c++20` I get warnings
2026-02-25 13:35:10 -07:00
Hugh Carson d5dec97d23 Fix memory leak 2026-02-25 11:46:21 -05:00
Hugh Carson 2d401bcb74 Add positive-weight simplex quadrature rules for orders 0-20
Triangle rules from Witherden & Vincent (2015), tet rules d=0-13
from Witherden & Vincent, tet rules d=14-20 from Chuluunbaatar et al.
(2022). All rules have strictly positive weights and interior points,
replacing the legacy rules which use negative weights at several
orders and fall back to Grundmann-Moller (negative weights, high
point counts) for tets at d>=9.
2026-02-24 20:21:49 -05:00
Andrew Ho 0a3184ab31 MFEM_EXPORT_GPU_CONFIG should export CPU config.mk when set to off 2026-02-24 11:56:38 -08:00
Wouter Tonnon 4f383f4b19 added missing face orientation 2026-02-24 20:27:14 +01:00
Dylan Copeland afded067a7 Replace absdof. 2026-02-24 11:17:54 -08:00
Mark L. Stowell a438e09caf Merge branch 'master' into plasma-dir-dev 2026-02-24 11:02:04 -08:00
chapman39 7f35ecb8f5 eliminate usage of modulus to avoid llvm backend bug 2026-02-24 10:50:52 -08:00
Alex Tyler Chapman ea03a86df2 Merge branch 'master' into bugfix/chapan39/use-mfem-abort-kernel-in-device 2026-02-24 10:32:30 -08:00
chapman39 6ef7a9e6fb 80 chars/ line 2026-02-24 10:32:18 -08:00
John Camier 629e93afd9 Merge branch 'master' into debug-mem-silent 2026-02-24 09:20:59 -08:00
Tzanio Kolev 3e277808a9 Merge pull request #5210 from mfem/hughcars/array-move-assignment-bugfix
Fix Array non-owning move assignment
2026-02-24 08:41:48 -08:00
Tzanio Kolev 864fb1ce9e Merge pull request #5217 from mfem/quadrature-function-fix
Fix a bug in `QuadratureFunction::GetValues` that returns a `DenseMatrix` view
2026-02-24 08:40:53 -08:00
Tzanio Kolev ac7415cc69 Merge branch 'master' into bugfix/unit-test-cout 2026-02-24 08:38:11 -08:00
Veselin Dobrev 38030d4395 Merge pull request #5222 from mfem/bugfix/chapman39/rm-return-from-omp
Remove return from openmp section
2026-02-24 08:18:53 -08:00
Alex Tyler Chapman 2c96dc6a1f Merge branch 'master' into bugfix/chapman39/rm-return-from-omp 2026-02-23 11:53:58 -08:00
Alex Tyler Chapman db7dd30d32 Merge branch 'master' into bugfix/chapan39/use-mfem-abort-kernel-in-device 2026-02-23 09:33:23 -08:00
John Camier ecbc7bf8c2 Merge branch 'master' into bugfix/unit-test-cout 2026-02-23 08:00:52 -08:00
John Camier 5b5a21edac Merge branch 'master' into debug-mem-silent 2026-02-22 12:28:39 -08:00
Tzanio Kolev 1f84ba036e Merge pull request #5179 from izaid/pfes
Fixed NULL pointer segfault in GetSurfaceFittingErrors
2026-02-21 12:52:33 -08:00
Tzanio Kolev 76d0312309 Merge branch 'master' into hughcars/array-move-assignment-bugfix 2026-02-21 12:52:11 -08:00
Tzanio Kolev c7ed339260 Merge pull request #5228 from mfem/mesh-3d-part-fix
Improve 3d mesh partitions
2026-02-21 12:43:49 -08:00
Tzanio Kolev f1b3a33fb2 Merge pull request #5234 from mfem/few-small-fixes
A few small fixes
2026-02-21 12:43:02 -08:00
rzhangbq 9e261aeb36 format 2026-02-20 18:06:33 -05:00
rzhangbq 3fe3c00c72 format 2026-02-20 18:05:51 -05:00
rzhangbq 1d925e5b7b format 2026-02-20 16:24:17 -05:00
Rushan ZhangandJan Nikl e779a5d47e Update miniapps/pic/electrostatic-pic.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-02-20 15:15:03 -05:00
Nuno Nobre 7cd35f97f7 Add ProjectDiscCoefficient based on max attr for scalar coeffs 2026-02-20 10:26:42 +00:00
rzhangbq f69b6204df preconstruct RHS 2026-02-19 23:34:57 -05:00
chapman39 a1fe3a19b1 dfem integrate: use mfem abort kernel in device code 2026-02-19 17:45:11 -08:00
Nuno Nobre 8baa46babd Allow evals of GridFunctionCoefficient on submeshes 2026-02-19 22:19:36 +00:00
Nuno Nobre 494fc00d34 Change IsParSubMesh to take Mesh ptr instead 2026-02-19 20:35:52 +00:00
Nuno Nobre 4dd3fcf811 Fix Mesh::GetFaceElementType for 1d meshes 2026-02-19 20:35:52 +00:00
Nuno Nobre 33d7cd11a2 Add missing setters for IntegrationPoint 2026-02-19 20:35:52 +00:00
Nuno Nobre fbd80e7493 Allow custom IntegrationRule for DomainLFGradIntegrator 2026-02-19 20:35:52 +00:00
rzhangbq a4fb0daa8e Update comments 2026-02-19 12:29:16 -05:00
rzhangbq 0b36f2adaa limit to 80 2026-02-19 12:27:52 -05:00
Rushan ZhangandJan Nikl 0288a5f146 Update miniapps/pic/electrostatic-pic.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-02-19 12:26:14 -05:00
Rushan ZhangandJan Nikl a1efd7a514 Update miniapps/pic/electrostatic-pic.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-02-19 12:25:51 -05:00
Rushan ZhangandJan Nikl e0c69fb83d Update miniapps/pic/electrostatic-pic.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-02-19 12:25:34 -05:00
Rushan ZhangandJan Nikl 43e88dd04f Update miniapps/pic/electrostatic-pic.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-02-19 12:25:16 -05:00
rzhangbq 946d4dde84 update comment 2026-02-19 12:24:44 -05:00
rzhangbq e890e9e6a5 update 2026-02-19 12:23:57 -05:00
Rushan ZhangandJan Nikl 7930c675ea Update miniapps/pic/electrostatic-pic.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-02-19 12:23:21 -05:00
Rushan ZhangandJan Nikl 298b14c82d Update miniapps/pic/electrostatic-pic.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-02-19 12:23:08 -05:00
Rushan ZhangandJan Nikl abb68a80e6 Update miniapps/pic/electrostatic-pic.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-02-19 12:22:47 -05:00
rzhangbq aec0b75047 change -oci default 2026-02-19 12:22:18 -05:00
rzhangbq f4e7c56119 change domain length var 2026-02-19 12:20:30 -05:00
rzhangbq eb70410a54 change ic for sample case 2026-02-19 12:18:46 -05:00
rzhangbq 9bccf40eb2 time out every timestep 2026-02-19 12:11:35 -05:00
Rushan ZhangandJan Nikl 3cb7465ab7 Update miniapps/pic/electrostatic-pic.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-02-19 12:02:51 -05:00
Satish Balay 213ccd7a4e rework PetscContainerSetCtxDestroy() usage for < (3,23,0) 2026-02-18 15:51:42 -06:00
Veselin Dobrev e3dedbbd5b Increase a relative tolerance due to failures on some machines 2026-02-18 10:27:44 -08:00
Will Pazner 8e78471fdf Add comment about the shape of FaceNbrData 2026-02-18 09:13:16 -08:00
Will Pazner c0f8501950 Add unit test for parallel L2 face restriction with vdim > 1 2026-02-18 09:13:03 -08:00
Will Pazner c31510289f Fix bug in ParL2FaceRestriction with vdim > 1
The layout of the FaceNbrData vector was not handled properly
2026-02-17 21:07:17 -08:00
John Camier 261f3805b8 Merge branch 'master' into debug-mem-silent 2026-02-17 10:59:40 -08:00
John Camier b386b2d6b6 Merge branch 'master' into bugfix/chapman39/rm-return-from-omp 2026-02-17 08:28:34 -08:00
Tzanio Kolev 6e98055eb7 Merge branch 'master' into quadrature-function-fix 2026-02-17 08:28:12 -08:00
Tzanio Kolev 2b14134496 Merge branch 'master' into najlkin/fix-cmplx-assign 2026-02-17 08:27:01 -08:00
Tzanio Kolev 5abd44f212 Merge pull request #5227 from mfem/add-constexpr
Add if constexpr to Kernel Specializations
2026-02-17 08:25:11 -08:00
Veselin Dobrev 75012728db Formatting: re-wrap comment to 80 chars/line. 2026-02-14 13:10:30 -08:00
rzhangbq 9b2bc9e57a update comment 2026-02-13 14:41:50 -05:00
rzhangbq 76d2f8fea9 changed verify input 2026-02-13 14:40:33 -05:00
rzhangbq 63f746b8dc changed some verify 2026-02-13 14:38:27 -05:00
rzhangbq 18d64b8b93 change abort to verify 2026-02-13 14:33:49 -05:00
rzhangbq a740225601 update comment 2026-02-13 14:25:28 -05:00
rzhangbq 0d5fc47a73 reduce para to pass 2026-02-13 14:22:43 -05:00
Dylan Copeland 1f094244f8 Typo 2026-02-13 10:37:58 -08:00
Dylan Copeland cc16ddadbf Merge branch 'master' of github.com:mfem/mfem into flip-index 2026-02-13 10:35:32 -08:00
Veselin Dobrev 8acd5cd3a2 Fix a size bug in thread-safe mode in H1_TriangleElement::CalcHessian.
Fix use-after-delete bug in nurbs_ex10p.cpp.

Use relative tolerance in the "Collocated Derivative Kernels" unit test
to resolve failures in some setups with the original absolute tolerance.
2026-02-13 10:29:22 -08:00
chapman39 1f5bc1c3d8 wording 2026-02-13 10:03:00 -08:00
chapman39 3588d47ec1 Merge remote-tracking branch 'origin/master' into bugfix/chapman39/rm-return-from-omp 2026-02-13 09:59:31 -08:00
Andrew Ho e7f5996bdf fix warnings with some compilers 2026-02-13 09:28:16 -08:00
Tzanio Kolev 560ad1b5a3 Merge pull request #5157 from mfem/plbound-extremum
Estimate function minimum/maximum using recursion + piecewise linear bounds
2026-02-13 07:08:57 -08:00
Alex Tyler Chapman f0fe5b0ec0 Merge branch 'master' into bugfix/chapman39/rm-return-from-omp 2026-02-11 15:14:48 -08:00
chapman39 a92983051a style 2026-02-11 15:14:23 -08:00
rzhangbq 89974e87b6 split funcs 2026-02-11 16:37:15 -05:00
rzhangbq ec071ad4ab refact 2026-02-11 16:04:51 -05:00
rzhangbq 22c873f097 refact 2026-02-11 16:04:33 -05:00
rzhangbq e57ffb8128 drop the flag neutralizing_const_computed and check if precomputed_neutralizing_lf is set (not null). 2026-02-11 16:04:00 -05:00
Mittal, Ketan 2d7c578033 new line before FindPointsGSLIB constructor, and set default redist interval to 5 2026-02-11 12:59:04 -08:00
rzhangbq b503939955 get rid of HyperParVec Pointer 2026-02-11 15:51:15 -05:00
rzhangbq 8a4a826248 remove redundant 2026-02-11 15:45:18 -05:00
rzhangbq 8011c106ae resolve line width 2026-02-11 15:44:21 -05:00
rzhangbq 11d0d6a7be update desc of rdi 2026-02-11 15:26:42 -05:00
rzhangbq 2cc4bd7285 abort 2026-02-11 15:25:38 -05:00
rzhangbq 7ff38189fb remove redundant codes 2026-02-11 15:04:42 -05:00
rzhangbq dc243c6f7c remove misputted comments 2026-02-11 15:02:55 -05:00
rzhangbq b3508002e1 delete redundant pointpos 2026-02-11 15:01:03 -05:00
rzhangbq 06177ea337 update comment 2026-02-11 14:58:07 -05:00
Stowell, Mark L. 794a5fbfc2 Adding miniapps/plasma subdirectory to build system 2026-02-11 11:56:06 -08:00
Stowell, Mark L. 746a62f017 Adding plasma miniapp directory 2026-02-11 11:53:01 -08:00
rzhangbq 526d86489a move reduce global ke to method 2026-02-11 14:52:23 -05:00
Rushan ZhangandJan Nikl e8872fa31f Update miniapps/pic/electrostatic-pic.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-02-11 14:44:34 -05:00
Rushan ZhangandJan Nikl d547dfc6bf Update miniapps/pic/electrostatic-pic.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-02-11 14:44:26 -05:00
Rushan ZhangandJan Nikl b68a35d611 Update miniapps/pic/electrostatic-pic.cpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-02-11 14:44:08 -05:00
rzhangbq d2e381183e remove t_init 2026-02-11 14:43:11 -05:00
rzhangbq d4c37a7c1b make E_gf a static 2026-02-11 14:40:07 -05:00
rzhangbq dee64c36e5 add options to not output csv 2026-02-11 14:34:47 -05:00
Will Pazner 37843b050c Add one more 'if constexpr' 2026-02-11 11:33:51 -08:00
rzhangbq 846147efc0 frequency -> interval 2026-02-11 14:29:39 -05:00
rzhangbq b621c9c4a2 rename size (num_ranks) 2026-02-11 14:19:05 -05:00
camierjs 436714f5ef Revert unused included header 2026-02-11 11:18:02 -08:00
rzhangbq 5b1295c955 rename fec and fes 2026-02-11 14:17:47 -05:00
rzhangbq 43609b5c35 restyle comments 2026-02-11 14:16:49 -05:00
camierjs 1ceef4f786 Add few missing Kernel() constexpr 2026-02-11 11:11:35 -08:00
rzhangbq 64b7fbdeb2 move vis to main() 2026-02-11 14:11:23 -05:00
rzhangbq 44ed485cf1 rename fes 2026-02-11 13:58:20 -05:00
rzhangbq 90d1ed5ae3 remove empty lines 2026-02-11 13:54:59 -05:00
rzhangbq d7614eeb7e adding a few comments 2026-02-11 13:52:37 -05:00
Vladimir Z Tomov 6bb6745c0e improve 3d partitions 2026-02-10 16:23:38 -08:00
Mittal, Ketan 60f47c287d CHANGELOG 2026-02-10 14:28:17 -08:00
Mittal, Ketan c441299f2b newline in gslib header, and some other minor change 2026-02-10 13:58:11 -08:00
Ketan Mittal 75526f58cc Merge branch 'master' into particles-pic-dev-pr 2026-02-10 13:10:10 -08:00
Mittal, Ketan 164ee942c8 Merge branch 'plbound-extremum' of https://github.com/mfem/mfem into plbound-extremum 2026-02-10 10:59:44 -08:00
Mittal, Ketan 16c4fbdd29 reviewer comments 2026-02-10 10:59:33 -08:00
Ketan Mittal e28093274b Merge branch 'master' into plbound-extremum 2026-02-09 19:06:18 -08:00
Andrew Ho 87dd19e6c0 more constexprs 2026-02-09 17:35:17 -08:00
Andrew Ho 678f53c306 use constexpr to prevent unintended kernel Pinstantiations 2026-02-09 17:17:26 -08:00
Tzanio Kolev 1861b80627 Merge pull request #5132 from farscape-project/superlu
Add toggle for SuperLU_DIST device offload
2026-02-07 13:14:15 -08:00
Tzanio Kolev a8c0c856f6 Merge pull request #5190 from mfem/launch-bounds
[GPU] Launch bounds
2026-02-07 13:14:00 -08:00
Gabriele Bozzola 9e4d9799dc Improve error message for gmsh versions != 2.2
I am a new user of [palace](https://github.com/awslabs/palace). As I was
trying to set a simple mesh up (with gmsh), I kept getting indexing
errors that I could not decipher. I eventually
[learned](https://mfem.org/mesh-formats/) that supported version for
gmsh meshes is 2.2.

This commit catches this and adds an informative error.
2026-02-06 16:12:27 -08:00
chapman39 32fb4bf244 remove return from openmp section 2026-02-05 14:56:40 -08:00
camierjs dbb86c87c2 Revert last MFEM_VERIFY 2026-02-04 16:23:07 -08:00
camierjs e866ede0c4 Re-enable GPU Wrap2D runtime verifications and revert EAMassAssemble static qualifiers 2026-02-04 16:05:57 -08:00
Jan Nikl ac4e558164 Minor unification of docstrings. 2026-02-04 15:21:02 -08:00
Jan Nikl 691cd8a687 Generalized RT normal projection. 2026-02-04 15:20:03 -08:00
Jan Nikl cdc327a511 Removed unused code. 2026-02-04 13:10:45 -08:00
rzhangbq 422eb8710f change zero-stepping logic 2026-02-02 18:15:35 -05:00
rzhangbq 42c47e9225 apply doxygen style 2026-02-02 16:47:19 -05:00
Veselin Dobrev 2d021685de Fix a bug in QuadratureFunction::GetValues when getting a reference to
the data for one mesh element as a DenseMatrix.

Added new methods:
- Array<T>::MakeRef(Memory<T> &base, int offset, int size_)
- DenseMatrix::MakeRef(Memory<real_t> &base, int offset, int h, int w)
2026-02-02 08:42:58 -08:00
camierjs c498d9c759 Merge branch 'master' into launch-bounds 2026-02-01 20:41:26 -08:00
camierjs 2896b2fb02 Forcing EAMassAssemble internal linkage to avoid ODR issues with gcc + nvcc 2026-02-01 20:41:12 -08:00
rzhangbq f3dc010bda update cmake case 2026-02-01 18:08:24 -05:00
Tzanio Kolev 8efb9483bc Merge pull request #5183 from mfem/fix-5180
Improve HYPRE solver documentation
2026-02-01 11:57:26 -08:00
camierjs 5507772f37 HIP defaults to MFEM_HIP_BLOCKS 2026-01-31 12:52:17 -08:00
rzhangbq fa34b2dc63 update case 2026-01-30 23:28:51 -05:00
rzhangbq 23b4cc62e9 update -nx ny nz of 3d3v case 2026-01-30 19:37:30 -08:00
rzhangbq 08c332c1b0 add 3d3v case 2026-01-30 22:34:25 -05:00
rzhangbq b2ad517e03 rename files 2026-01-30 22:04:27 -05:00
rzhangbq 812a907abe add support for 3D 2026-01-30 21:51:54 -05:00
rzhangbq 3c73c50b29 format 2026-01-30 21:41:37 -05:00
Hugh Carson d6ea262498 Address PR feedback
- Hoist src deletion
- Remove unneeded explicit cast given src is named
2026-01-30 14:01:59 -05:00
Tzanio Kolev 1b20704b24 Merge branch 'master' into launch-bounds 2026-01-30 09:43:05 -08:00
Tzanio Kolev 55bafba69a Merge branch 'master' into fix-5180 2026-01-30 09:40:40 -08:00
Tzanio Kolev 3a29fda4cd Merge pull request #5209 from mfem/particlevec-findpts-interface
Remove FindPointsGSLIB::Interpolate overload
2026-01-30 09:40:24 -08:00
Andrew Ho 26e9057f02 revert change, updated comment to why libdl gets special treatment 2026-01-30 07:27:04 -08:00
Dylan Copeland 6b147fd9ff Merge branch 'master' of github.com:mfem/mfem into flip-index 2026-01-29 15:45:52 -08:00
Andrew Ho c53bce08f1 missed a few periods 2026-01-29 12:52:26 -08:00
Andrew Ho afadd435f5 review comments 2026-01-29 12:50:04 -08:00
Andrew Ho 36d7629b26 residual vector requires hypre >= 2.15.0 2026-01-29 12:41:53 -08:00
Andrew Ho 8f32e6620b updated changelog, removed unused declaration 2026-01-29 08:15:34 -08:00
Jan Nikl 0d2e8f93e6 Fixed vis of the initial exact solution. 2026-01-28 18:14:44 -08:00
Tzanio Kolev 766760659d Merge branch 'master' into fix-5180 2026-01-28 16:39:11 -08:00
Jan Nikl 16dfa11f27 Minor docstring correction. 2026-01-28 15:45:20 -08:00
Jan Nikl c7774e3c1c Fixed complex grid function copy assignment. 2026-01-28 15:34:55 -08:00
John Camier 2c0419a9a8 Merge branch 'master' into launch-bounds 2026-01-28 11:36:48 -08:00
Tzanio Kolev 9185762478 Merge pull request #4974 from mfem/hybridization-gpu-amr
Hybridization on GPU with nonconforming AMR
2026-01-28 09:36:41 -08:00
Tzanio Kolev 2c41e483fe Merge pull request #5194 from mfem/det1d-surface
Surface 1D determinant [det1d-surface]
2026-01-28 09:36:27 -08:00
Tzanio Kolev 78a4a77ed7 Merge pull request #5110 from mfem/zeroel-lor-ea-fix
Zero element fix for device HO <-> LOR transfers [zeroel-lor-ea-fix]
2026-01-28 09:33:46 -08:00
Tzanio Kolev ea4aceeffc Merge pull request #5134 from mfem/add_trivial_hessian
Fix NURBS hessians
2026-01-28 09:33:06 -08:00
Will Pazner 1f8af4538c Merge pull request #5155 from mfem/leak-and-omp-critical-fix
Fix issues with `DofToQuad` methods
2026-01-27 11:37:35 -08:00
Hugh Carson a0981cb363 Refactor test for showing equivalency of copy and move assignment 2026-01-27 14:15:08 -05:00
Mittal, Ketan 1fd8301d38 Merge branch 'particles-pic-dev-pr' of https://github.com/mfem/mfem into particles-pic-dev-pr 2026-01-27 11:03:35 -08:00
Mittal, Ketan a013a150c1 include ordering argument in Interpolate 2026-01-27 11:03:27 -08:00
Hugh Carson 894de992da Move assignment of non-owned arrays must fallback to copy assignment 2026-01-27 14:01:23 -05:00
John Camier ca1bbaa7ed Merge branch 'master' into launch-bounds 2026-01-27 09:46:35 -08:00
rzhangbq 0c9d63ba7f update comment 2026-01-26 23:47:14 -05:00
rzhangbq a367bcc30d add pre-compute grad-interpolator 2026-01-26 23:44:42 -05:00
Mittal, Ketan 2ce98bec12 documentation 2026-01-26 20:22:43 -08:00
Mittal, Ketan 3db24b1b40 remove interpolate overload with ParticleVector 2026-01-26 20:19:55 -08:00
Mittal, Ketan d1db3325f2 FindPointsGSLIB documentation for constructor 2026-01-26 19:35:24 -08:00
Mittal, Ketan 0a8b4ad9af use updated FindPointsGSLIB interface 2026-01-26 19:30:28 -08:00
rzhangbq 2283ea838a should not init vis-socket in the beginning 2026-01-26 20:15:05 -05:00
Mittal, Ketan dcc3ba856e Merge branch 'master' of https://github.com/mfem/mfem into particles-pic-dev-pr 2026-01-26 09:32:52 -08:00
Tzanio Kolev 0e61a94b5f Merge pull request #5161 from adam-sim-dev/mpi_c_bool
Use MPI_C_BOOL for PETSc>=3.24.0
2026-01-26 08:17:25 -08:00
Tzanio Kolev 194f2a56b7 Merge pull request #5067 from mfem/lorentz-particleset
Lorentz Miniapp using `ParticleSet`
2026-01-26 08:16:19 -08:00
Tzanio Kolev efe05b9b1a Merge pull request #5206 from mfem/astyle-bin-dev
Moving definition of ASTYLE_BIN
2026-01-26 07:59:59 -08:00
rzhangbq 6a4d7db35b remove func call at particle step 2026-01-26 01:01:02 -05:00
rzhangbq e1567e2729 simplify particle step 2026-01-25 23:37:24 -05:00
rzhangbq 2ede430196 bind field solver to FESpace instead 2026-01-25 22:52:59 -05:00
rzhangbq 1e7b7403ff split total energy val 2026-01-25 20:37:23 -05:00
rzhangbq e33690db45 Change to use GradientInterpolator 2026-01-25 18:55:54 -05:00
Paul Hilscher cece1b642b Merge branch 'master' into mfem-v13-mesh-reader-fix-issue-4625 2026-01-26 08:31:46 +09:00
Tzanio Kolev 91600c12eb Merge branch 'master' into zeroel-lor-ea-fix 2026-01-25 09:41:10 -08:00
Tzanio Kolev 35aef0486f Merge branch 'master' into det1d-surface 2026-01-25 09:41:04 -08:00
rzhangbq daac9192cc use stopwatch instead 2026-01-24 16:00:29 -05:00
rzhangbq 4699d9c9e1 get rid of fmod usage 2026-01-24 15:24:27 -05:00
rzhangbq 24abcaee7a Update descriptions of simulation paras 2026-01-24 15:16:04 -05:00
rzhangbq 14d59df037 rename class names 2026-01-24 15:12:57 -05:00
rzhangbq 5d23e37b83 remove SIZE 2026-01-24 15:08:25 -05:00
Tzanio Kolev df6d58da30 Merge branch 'master' into hybridization-gpu-amr 2026-01-24 11:45:16 -08:00
Tzanio Kolev 942249395b Merge branch 'master' into debug-mem-silent 2026-01-24 11:40:50 -08:00
rzhangbq 7f5b68dfbd remove redundant findpoints 2026-01-23 17:28:53 -05:00
Stowell, Mark L. 500e952d5c Moving definition of ASTYLE_BIN 2026-01-23 12:39:58 -08:00
Tzanio Kolev 1c56fe47c4 Merge branch 'master' into lorentz-particleset 2026-01-23 10:08:42 -08:00
Tzanio Kolev bbd33cfcc1 Merge branch 'master' into add_trivial_hessian 2026-01-23 10:02:02 -08:00
Ido Akkerman 5083a29ccd Merge branch 'add_trivial_hessian' of github.com:mfem/mfem into add_trivial_hessian 2026-01-23 10:25:33 +01:00
Ido Akkerman 6e063a5d23 Comment on tolerance 2026-01-23 10:24:57 +01:00
Ido Akkerman 87b11c227b Other compare calculation and check 2026-01-23 10:12:45 +01:00
Stowell, Mark L. a3f6d5b971 Changing std::cout to mfem::out 2026-01-22 15:37:51 -08:00
Rushan Zhang ac0454f07f Merge branch 'master' into particles-pic-dev-pr 2026-01-21 15:00:08 -05:00
Andrew Ho 194f3d8140 suggestions from Veselin 2026-01-21 11:45:20 -08:00
rzhangbq 9e727d568c move func definition all to the bottom 2026-01-21 14:40:44 -05:00
rzhangbq 7fd9af27a5 move up comments 2026-01-21 14:40:27 -05:00
John Camier db10fd292a Merge branch 'master' into launch-bounds 2026-01-21 11:37:08 -08:00
rzhangbq 77646c87dd remove redundant comments 2026-01-21 14:28:22 -05:00
rzhangbq 8531a43aac get rid of ctx.L_x in member funcs 2026-01-21 14:27:09 -05:00
rzhangbq 2b7f4ca792 add descriptions 2026-01-21 14:24:16 -05:00
rzhangbq 8e41393e14 Remove RemoveLostParticles (we use periodic boundary, particles should never move out of the computation space) 2026-01-21 14:17:14 -05:00
rzhangbq 452531e22f avoid use of ctx. out of main() 2026-01-21 14:10:12 -05:00
Ketan Mittal 5546250963 Merge branch 'master' into plbound-extremum 2026-01-21 11:00:02 -08:00
rzhangbq 6b6e5bf4b8 not hardcoding visport 2026-01-21 13:51:26 -05:00
rzhangbq 274bd5b670 now we can safely remove redundant FindPoints 2026-01-21 13:50:13 -05:00
rzhangbq b8f3571ba1 remove old Init particle declaration 2026-01-21 13:49:43 -05:00
rzhangbq 7f8e9680a6 add member func declaration 2026-01-21 13:49:08 -05:00
rzhangbq 2bebdf7595 make particle init as pic member func, so find particle is called upon particle creation 2026-01-21 13:48:46 -05:00
rzhangbq 759dacf996 using new findpoints 2026-01-21 13:47:38 -05:00
rzhangbq 2e76b94e17 add findparticles func 2026-01-21 13:45:48 -05:00
Mark L. Stowell 3f9b44a9cd Merge branch 'master' into phys-range-dim 2026-01-21 10:38:56 -08:00
rzhangbq 128b7a092b add back FindPoints before Interpolate 2026-01-21 13:07:31 -05:00
rzhangbq 491c558a57 change testcase to do -rdf 2 2026-01-21 13:06:59 -05:00
Mittal, Ketan 072147289b update CHANGELOG 2026-01-21 09:26:20 -08:00
Tzanio Kolev f2a42123f7 Merge pull request #4326 from mfem/nurbs_nodal_interp
Nodal interpolation for NURBS
2026-01-21 08:53:42 -08:00
Tzanio Kolev 85c95269ad Merge branch 'master' into nurbs_nodal_interp 2026-01-21 08:47:56 -08:00
rzhangbq 45bf80a62e format 2026-01-20 23:38:39 -05:00
rzhangbq fdc885ecd2 remove redundant FindPoints 2026-01-20 23:38:15 -05:00
rzhangbq e9b4630d58 changing -np def to total #particle 2026-01-20 23:03:21 -05:00
rzhangbq 5d8442c21c make sure there is only one finder 2026-01-20 22:56:53 -05:00
John Camier 5b065ad7f2 Merge branch 'master' into debug-mem-silent 2026-01-20 17:59:07 -08:00
Mittal, Ketan cde2b05366 documentation 2026-01-20 17:29:09 -08:00
Mittal, Ketan e8d1fc9b60 wordsmithing 2026-01-20 17:26:56 -08:00
Mittal, Ketan 60771f2f27 minor 2026-01-20 15:45:43 -08:00
Mittal, Ketan dbe2c6862c fix distribution construction for negative std dev 2026-01-20 15:42:02 -08:00
Mittal, Ketan 35442a2004 dont use normal distribution if std dev is negative 2026-01-20 15:33:22 -08:00
Mittal, Ketan 1a4c7eb027 minor change to sample run 2026-01-20 15:28:51 -08:00
Mittal, Ketan 60a9893d52 minor 2026-01-20 15:25:06 -08:00
Andrew Ho 8c2ffb9d26 added Set/GetUseTwoNorm 2026-01-20 13:25:08 -08:00
Mittal, Ketan 08f41f6450 Merge branch 'lorentz-particleset' of https://github.com/mfem/mfem into lorentz-particleset 2026-01-20 12:24:15 -08:00
Mittal, Ketan d184921e09 remove unused input argument 2026-01-20 12:24:07 -08:00
Ketan MittalandJan Nikl 57e26f75b0 Apply suggestions from code review
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-01-20 12:22:49 -08:00
Mittal, Ketan 2eaf46c80d change particle momentum initialization 2026-01-20 10:40:41 -08:00
Mittal, Ketan 48a2648ec5 Merge branch 'lorentz-particleset' of https://github.com/mfem/mfem into lorentz-particleset 2026-01-20 10:05:58 -08:00
Mittal, Ketan bfffb837d3 add option to specify output ordering in FindPointsGSLIB::Interpolate 2026-01-20 10:05:48 -08:00
John Camier 2737feaa2a Merge branch 'master' into launch-bounds 2026-01-19 19:09:42 -08:00
Ketan Mittal 988cc5b18d Merge branch 'master' into lorentz-particleset 2026-01-19 19:03:36 -08:00
Tzanio Kolev dfd55716bd Merge pull request #5196 from mfem/pncmesh-update
ParNCMesh update bug fix
2026-01-19 11:28:49 -08:00
Tzanio Kolev 49a50027dd Merge pull request #5167 from mfem/nurbs-variable-1d-dev
Nurbs variable 1d dev
2026-01-19 11:28:21 -08:00
Mittal, Ketan ae49f4be68 make style 2026-01-18 15:47:58 -08:00
Mittal, Ketan c51d05f1e1 Merge branch 'lorentz-particleset' of https://github.com/mfem/mfem into lorentz-particleset 2026-01-18 15:47:40 -08:00
Mittal, Ketan c5ef67adcf address reviewer comments 2026-01-18 15:47:29 -08:00
Ketan Mittal c5f78ea58a Merge branch 'master' into lorentz-particleset 2026-01-18 15:44:11 -08:00
Ketan MittalandJan Nikl d066b11e18 Update miniapps/common/particles_extras.hpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-01-18 15:44:01 -08:00
Ketan MittalandJan Nikl cb85a7b804 Apply suggestions from code review
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-01-18 15:36:24 -08:00
John Camier 3dcba10659 Merge branch 'master' into launch-bounds 2026-01-17 07:58:32 -08:00
Andrew Ho 4c6be0bc6f default p=2 to match hypre 2026-01-16 14:21:14 -08:00
Ketan Mittal 7f4d7b8f4e Merge branch 'master' into plbound-extremum 2026-01-16 12:54:56 -08:00
Jan Nikl 47c9ad2e34 Fixed visulization in ex22p. 2026-01-16 11:20:13 -08:00
Tzanio Kolev b5af0e9f81 Merge pull request #5184 from mfem/najlkin/fix-ex21-rhs
[BUG] Fixed rhs in example 21
2026-01-16 10:50:21 -08:00
Tzanio Kolev 33452bd3e8 Merge pull request #5189 from mfem/najlkin/fix-ghost-face
[BUG] Fixed initialization of ghost face transformations
2026-01-16 10:49:52 -08:00
Tzanio Kolev 27ed1f64f9 Merge pull request #5068 from farscape-project/typos
Documentation fixes and minor refactoring
2026-01-16 10:49:34 -08:00
rzhangbq b31b0e04bd change suggested nx and ny s.t. Debye length is resolved 2026-01-15 23:41:26 -05:00
rzhangbq 838206e6a9 fix vis bug 2026-01-15 23:35:06 -05:00
rzhangbq c681a74f87 rm redundant continue 2026-01-15 21:26:38 -05:00
Ketan Mittal 4d1cd791f3 Merge branch 'master' into lorentz-particleset 2026-01-15 14:27:26 -08:00
Mittal, Ketan 6529372830 reviewer comments 2026-01-15 13:10:47 -08:00
Dylan Copeland 230dc805f3 Unit test. 2026-01-15 11:40:57 -08:00
Rushan ZhangandKetan Mittal b45138e6d7 Use common::VisualizeField instead of my own vis
Co-authored-by: Ketan Mittal <ketan.mittal@gmail.com>
2026-01-15 11:46:24 -05:00
rzhangbq f692d94d08 make finder a member obj 2026-01-15 11:44:45 -05:00
Rushan ZhangandKetan Mittal 6a0e1a7a89 change ip set
Co-authored-by: Ketan Mittal <ketan.mittal@gmail.com>
2026-01-15 11:05:02 -05:00
Eric B. Chin cb2d4bde47 update an assert 2026-01-14 16:10:59 -08:00
Mittal, Ketan d66d799387 minor 2026-01-14 15:25:11 -08:00
camierjs ca43ab0c61 Fix SmemPAVectorDiffusionApply2D 2026-01-14 15:01:28 -08:00
camierjs 1c60d5946b Fix vector diffusion bounds 2026-01-14 14:57:07 -08:00
Kenneth Weiss f6bb6982e8 Updates CHANGELOG 2026-01-14 14:35:15 -08:00
camierjs c9768e34bc Add missing specializations and vector bounds 2026-01-14 14:34:54 -08:00
Mittal, Ketan 51f205b273 reviewer comments 2026-01-14 14:14:31 -08:00
Tzanio Kolev 2352f7be6b Fix formatting in example command line usage 2026-01-14 13:55:38 -08:00
Dylan Copeland 8df194e6b0 Check whether update has already been done, to avoid an incorrect additional update. 2026-01-14 13:52:29 -08:00
Dylan Copeland 0161ad9d92 Minor simplifications. 2026-01-14 12:22:47 -08:00
Dylan Copeland 3589479481 Merge branch 'master' of github.com:mfem/mfem into flip-index 2026-01-14 12:10:30 -08:00
Dylan Copeland e9acfeccda Using new sign functions. 2026-01-14 12:10:07 -08:00
Mittal, Ketan ec8cd31f32 build for make and cmake 2026-01-14 11:32:52 -08:00
Jan Nikl a0f2250a76 Minor decoration. 2026-01-14 10:14:10 -08:00
Ido Akkerman 244db1b571 TRying to fix CI issue 2026-01-14 13:35:53 +01:00
Ido Akkerman 75795809ef Fix CI issues 2026-01-14 13:17:22 +01:00
Ido Akkerman 825a5a7f2e Typos and other fixes 2026-01-14 11:44:52 +01:00
Eric B. Chin 4ed8f16325 bugfix and formatting 2026-01-13 21:50:00 -08:00
Kenneth Weiss 882dedf5f3 Changes based on PR review suggestions 2026-01-13 21:14:21 -08:00
Kenneth Weiss 5f051efc49 Merge branch 'master' into nurbs-variable-1d-dev 2026-01-13 21:04:44 -08:00
Eric B. Chin ec896295d6 initial implementation 2026-01-13 17:12:24 -08:00
rzhangbq ec1ba64dac use for loop instead of hardcoding dims 2026-01-13 19:34:12 -05:00
rzhangbq a9590b900a remove outdated comments 2026-01-13 19:23:41 -05:00
rzhangbq e7f2083f0b regulating line lengths 2026-01-13 19:20:53 -05:00
rzhangbq 1b93160f5d remove redundant code for b 2026-01-13 19:11:37 -05:00
rzhangbq 74476c8f89 put the sample run in 1 line 2026-01-13 19:05:23 -05:00
rzhangbq 934958771c update csv 2026-01-13 19:03:42 -05:00
rzhangbq 0f827820f6 remove outdated B_gf comments 2026-01-13 19:00:58 -05:00
Rushan Zhang 709a8ca7e4 move .gitignore 2026-01-13 18:58:14 -05:00
Rushan Zhang fea9d2c4ce move gitignore 2026-01-13 18:57:46 -05:00
Jan Nikl 20bf4d5a98 Added a unit test for shared faces. 2026-01-13 13:24:31 -08:00
Ketan Mittal ad7cf12cd5 Merge branch 'master' into plbound-extremum 2026-01-13 12:24:55 -08:00
Ketan Mittal ea9686bdc0 Merge branch 'master' into particles-pic-dev-pr 2026-01-13 12:22:04 -08:00
camierjs 2375135f9a Add the launch bounds for DGMassCGIteration 2026-01-13 11:46:46 -08:00
camierjs a4800f42dd Merge branch 'master' into launch-bounds 2026-01-13 11:45:11 -08:00
Tzanio Kolev 8921101d14 Merge pull request #5176 from mfem/remhos-kernel-prep
Remhos benchmarking prep
2026-01-13 11:18:08 -08:00
Jan Nikl f74b394c8a Changed the ghost face transformation face number to the ghost. 2026-01-13 11:01:18 -08:00
John Camier caa973d6a0 Merge branch 'master' into cmake-config 2026-01-13 08:13:47 -08:00
Ido Akkerman e282d4518e Add changes to CHANGELOG 2026-01-13 13:20:32 +01:00
Ido Akkerman 1e48c7e6d0 Add other elements to test case 2026-01-13 12:29:07 +01:00
Ido Akkerman 88456472dc Clean unit test 2026-01-13 12:16:44 +01:00
Ido Akkerman 7040fe65da Add compare-dc to ignore file 2026-01-13 12:16:22 +01:00
camierjs 6df83bd190 Merge branch 'gpu-bounds' into launch-bounds 2026-01-12 16:11:43 -08:00
camierjs 10d975d0e7 Remove unused code 2026-01-12 15:54:22 -08:00
camierjs bae772c6f1 CEED bench options 2026-01-12 10:25:01 -08:00
Ketan Mittal abdb023ae3 Merge branch 'master' into plbound-extremum 2026-01-12 10:12:14 -08:00
Rushan Zhang 9f03879386 Merge branch 'master' into particles-pic-dev-pr 2026-01-12 12:54:04 -05:00
Jan Nikl 5e43a958b7 Minor correction of GetGhostFaceTransformation(). 2026-01-12 09:53:59 -08:00
rzhangbq 43b26e7a5b update description 2026-01-12 12:49:15 -05:00
Jan Nikl 14fc04e9ee Fixed initialization of ghost face transformations. 2026-01-12 09:47:43 -08:00
rzhangbq 3a1fb995a4 fix argument description 2026-01-12 12:33:23 -05:00
rzhangbq 87cb7170b2 change description 2026-01-12 12:31:33 -05:00
camierjs 79e0bc1ab2 CEED bench options 2026-01-12 09:08:29 -08:00
Ido Akkerman 847cf4a646 Merge branch 'add_trivial_hessian' of github.com:mfem/mfem into add_trivial_hessian 2026-01-12 18:04:08 +01:00
Ido Akkerman bdb3f39ffa Add extra hessian check 2026-01-12 18:03:09 +01:00
Ido Akkerman 803e2bd5c9 Add tolerance to file comparison 2026-01-12 18:02:32 +01:00
Ido Akkerman 2f7ba402dd Add miniapp tool to compute difference 2026-01-12 16:12:47 +01:00
Ido Akkerman 26374d9be8 Add meshes for distortion test 2026-01-12 16:08:38 +01:00
Ido Akkerman 7ae7690846 Fix more numbering issues 2026-01-12 16:06:16 +01:00
camierjs c21c6cb00b Add CEED benches order 7 2026-01-11 19:50:28 -08:00
camierjs 1bd9dd2e5d CUDA CEED benches 2026-01-11 18:10:28 -08:00
Tzanio Kolev 8102cb8141 Merge pull request #5175 from mfem/artv3/grifun-mem-type-const
Specify device memory type in grid function constructor
2026-01-11 16:05:03 -08:00
rzhangbq 3165f09e0d update description 2026-01-11 19:01:06 -05:00
rzhangbq 03910bbe86 set vscode formatting 2026-01-11 17:26:55 -05:00
rzhangbq 9532220814 add a high-level summary 2026-01-11 16:44:04 -05:00
rzhangbq f5decb7c9e rename 2026-01-11 16:38:17 -05:00
rzhangbq 4e00bfb158 run astyle 2026-01-11 16:36:02 -05:00
Mittal, Ketan bc0ec2e717 add another sample run 2026-01-11 12:09:01 -08:00
camierjs 31409edb7f Add CUDA MAX_THREADS_PER_BLOCK logic 2026-01-11 11:50:44 -08:00
camierjs ed66371ebd Cleanup CEED bench 2026-01-11 11:34:00 -08:00
camierjs 5727331966 Cleanup CEED bench 2026-01-11 11:24:06 -08:00
rzhangbq 7b79732a28 make weather reproduce an option 2026-01-10 19:13:37 -05:00
rzhangbq bdf8f6d21b remove double-interpolate E and change redis 2026-01-10 19:03:13 -05:00
rzhangbq cbc63ad344 remove redundant 2026-01-10 18:54:59 -05:00
rzhangbq 844b655c76 add chrono 2026-01-10 17:46:03 -05:00
rzhangbq db6c8f5a9a change sample run 2026-01-10 17:30:36 -05:00
rzhangbq 06331492e5 update discription 2026-01-10 17:28:10 -05:00
rzhangbq dabb5652fe change para name 2026-01-10 16:54:57 -05:00
rzhangbq 4947faca83 update test case 2026-01-10 16:50:40 -05:00
rzhangbq 9d1cb51acc format and update banner 2026-01-10 16:46:16 -05:00
rzhangbq 1ff1f5777f update readme and update pic banner display 2026-01-10 16:39:59 -05:00
rzhangbq 7bc13bf237 finish migration 2026-01-10 16:32:36 -05:00
camierjs 40039a6897 Cleanup CEED benchmarks 2026-01-10 10:58:50 -08:00
Jan Nikl 99c858c389 Fixed ex21 rhs integrator. 2026-01-09 20:43:53 -08:00
camierjs a05d4e1852 Bounds for HIP 2026-01-09 14:49:40 -08:00
camierjs 29c2442e47 tests/benchmarks/bench_ceed 2026-01-09 12:06:35 -08:00
Mittal, Ketan fcb78b81ec minor 2026-01-08 22:19:49 -08:00
Mittal, Ketan 92ab53dec6 Merge branch 'lorentz-particleset' of https://github.com/mfem/mfem into lorentz-particleset 2026-01-08 22:17:46 -08:00
Mittal, Ketan c2475e43fd fix nparticles used in ParticleSet constructor 2026-01-08 22:17:21 -08:00
izaid 5cd3ec521b applied astyle 2026-01-08 23:19:16 +00:00
Alex Tyler Chapman 232853214d Merge branch 'master' into zeroel-lor-ea-fix 2026-01-08 14:34:12 -08:00
rzhangbq f65a0f093b remove B-stepping 2026-01-08 14:46:49 -05:00
rzhangbq e7058f6aca remove traj vis 2026-01-08 14:43:31 -05:00
rzhangbq 785afe66cd first commit 2026-01-08 14:42:27 -05:00
Mittal, Ketan d1a9c6e62d format miniapp output 2026-01-08 10:53:49 -08:00
Mittal, Ketan 8f0b57138b Merge branch 'master' of https://github.com/mfem/mfem into plbound-extremum 2026-01-08 10:37:40 -08:00
Mittal, Ketan 3167a1c98b remove default value from tol in pgridfunc.hpp 2026-01-08 10:31:19 -08:00
Kenneth Weiss 23986c5c64 Generalizes a check in NURBSExtension::CheckPatches
Per PR review suggestion.
2026-01-08 10:13:21 -08:00
Andrew Ho a024fb10bc more initial solver configurations 2026-01-07 17:17:19 -08:00
Andrew Ho 531e8d7ad9 Added a way to get the residual vector r and ||r||_p 2026-01-07 17:02:25 -08:00
Ketan Mittal 5293b9694d Merge branch 'master' into lorentz-particleset 2026-01-07 16:05:25 -08:00
Andrew Ho 9008d5a050 Improved hypre's documentation and added getter methods (when possible) for solver parameters 2026-01-07 15:36:54 -08:00
Tzanio Kolev 9488637956 Merge branch 'master' into pfes 2026-01-07 14:20:49 -08:00
Tzanio Kolev c18f3ba6f9 Merge branch 'master' into add_trivial_hessian 2026-01-07 14:19:51 -08:00
Tzanio Kolev af23695747 Merge branch 'master' into artv3/grifun-mem-type-const 2026-01-07 14:19:37 -08:00
Kenneth Weiss 1f97289d2a Merge branch 'master' into nurbs-variable-1d-dev 2026-01-07 13:07:48 -08:00
Kenneth Weiss 19db07b30d Simplifies 1D checks in NURBSExtension::CheckPatches()
Per PR review discussion. The checks were unnecessarily overconstraining.
2026-01-07 13:05:40 -08:00
Kenneth Weiss 419f890e5c Adds datafiles for 1D NURBS tests instead of inlining the meshes as strings
Per PR review suggestion.
2026-01-07 12:22:11 -08:00
Kenneth Weiss 9c85a6365f Renames NURBSExtension function to GetPatchSpaceDimension()
Per PR review discussion.
2026-01-07 10:42:45 -08:00
Kenneth Weiss 2a10ab2f48 Merge branch 'master' into nurbs-variable-1d-dev 2026-01-07 10:26:23 -08:00
Vladimir Z Tomov 19e60a38cc style 2026-01-06 17:28:43 -08:00
Vladimir Z Tomov e2a382dca4 Moved DGMassInverse::DGMassCGIteration to hpp. Removed specializations (done in remhos). 2026-01-06 17:26:29 -08:00
Arturo VargasandTom Stitt ffaae2ea82 Update fem/gridfunc.hpp
Co-authored-by: Tom Stitt <stitt4@llnl.gov>
2026-01-06 15:59:01 -08:00
Mittal, Ketan f429737c12 change 0.0 to 0_r 2026-01-06 12:22:27 -08:00
Andrew Ho ad40704e20 Merge branch 'master' into cmake-config 2026-01-06 11:55:40 -08:00
Mittal, Ketan 04fd683e9c doxygen fix 2026-01-06 11:38:42 -08:00
Mittal, Ketan 4b9f46a6b0 Merge branch 'plbound-extremum' of https://github.com/mfem/mfem into plbound-extremum 2026-01-06 11:30:04 -08:00
Mittal, Ketan 793a5b6d60 minor 2026-01-06 11:29:47 -08:00
Mittal, Ketan 4e6e9a13b6 Merge branch 'master' of https://github.com/mfem/mfem into plbound-extremum 2026-01-06 11:15:53 -08:00
Ido Akkerman d33fd770cd Merge branch 'master' into nurbs_nodal_interp 2026-01-06 10:44:15 +01:00
Dylan Copeland 6f280d81b5 Introducing new functions for flipping index signs. 2026-01-05 18:46:25 -08:00
Tzanio Kolev d48af86cdf Merge branch 'master' into hybridization-gpu-amr 2026-01-05 16:32:49 -08:00
Vladimir Z Tomov b2947bbaca comments 2026-01-05 13:11:10 -08:00
Vladimir Z Tomov 6b7b6e8966 Return Mesh and use Array. 2026-01-05 09:57:18 -08:00
izaid 90353c437e Fixed bug in GetSurfaceFittingErrors 2026-01-01 23:09:09 +01:00
John Camier fbb50af208 Merge branch 'master' into debug-mem-silent 2025-12-30 12:50:33 -08:00
John Camier b1edfc3497 Merge branch 'master' into artv3/grifun-mem-type-const 2025-12-30 12:50:16 -08:00
John Camier 654fd1b611 Merge branch 'master' into remhos-kernel-prep 2025-12-30 12:49:42 -08:00
Kenneth Weiss cdc6893087 Cleanup -- removes some unnecessary changes 2025-12-26 12:57:30 -08:00
Kenneth Weiss 059bbd7f2e Merge branch 'master' into nurbs-variable-1d-dev 2025-12-26 12:16:58 -08:00
Vladimir Z Tomov 53d7207786 updated comment 2025-12-25 21:18:13 -08:00
Kenneth Weiss 6a99a7a63e Consolidates 1D/2D/3D logic for NURBSExtention::Load() 2025-12-25 20:50:49 -08:00
Kenneth Weiss 1d7e1e9bb4 Adds 1D support to NURBSExtension::CheckPatches() 2025-12-25 18:20:02 -08:00
Kenneth Weiss ea0bec7d13 In NURBSExtension header, moves GetPatchDim() near Dimension()
Per PR suggestion
2025-12-25 17:46:33 -08:00
Kenneth Weiss ad6baa0cff Adds 1D support to NURBSExtension::CheckKVDirection
Refactors several functions to use a new utility function
NURBSExtension::GetPatchKnotVectorEdges() which handles 1D, 2D and 3D.
2025-12-25 15:13:20 -08:00
Kenneth Weiss a049988e16 Consolidated 1D with 2D/3D handling in NURBSExtension utility functions
NURBSExtension::CreateComprehensiveKV(), NURBSExtension::UpdateUniqueKV(), and NURBSExtension::ConsistentKVSets()
2025-12-25 14:36:34 -08:00
Kenneth Weiss db75e98609 Adds 1D support to NURBSExtension::ConsistentKVSets() 2025-12-25 14:30:13 -08:00
Kenneth Weiss 88d2d8bdb1 Adds unit test for shared knot vectors in 1D 2025-12-25 13:43:28 -08:00
Kenneth Weiss 902f2fdb08 Simplify code in NURBSExtension::CreateComprehensiveKV() 2025-12-25 13:41:26 -08:00
Kenneth Weiss 46a22b93eb Renames NURBSExtension::GetPhysicalDim() to GetPatchDim()
Per PR suggestion, this is better than falling back to the reference space dimension. We now MFEM_VERIFY that HavePatches() is true.
2025-12-25 12:47:10 -08:00
Kenneth Weiss 58c8905261 Removes dof2patch from Set1DSolutionVector
Per PR comments, dof2patch is related to NC patches, and is not relevant in 1D
2025-12-25 12:13:04 -08:00
John Camier d191906f7a Merge branch 'master' into remhos-kernel-prep 2025-12-25 08:40:37 -08:00
Kenneth Weiss 25fc5c18dd Adds edges section for 1D NURBS in Mesh::PrintTopoEdges()
This allows the meshes to be viewed in VisIt.
2025-12-24 18:40:17 -08:00
Kenneth Weiss dd3414a3a6 Removes asssumption that number of patches == number of KnotVectors in 1D 2025-12-24 17:02:48 -08:00
Vladimir Z Tomov e6a990c2a5 minor 2025-12-24 11:55:36 -08:00
John Camier 935c5e4967 Merge branch 'master' into remhos-kernel-prep 2025-12-24 11:24:01 -08:00
Vladimir Z Tomov 1b5f71f1fb doxygen 2025-12-23 15:51:39 -08:00
Vladimir Z Tomov 65092ce621 minor 2025-12-23 15:45:35 -08:00
Vladimir Z Tomov 2f38aa9f73 doxygen fix 2025-12-23 15:39:41 -08:00
Vladimir Z Tomov e30bf35f60 minor 2025-12-23 15:31:58 -08:00
Vladimir Z Tomov c2623f407b minor 2025-12-23 15:30:50 -08:00
Vladimir Z Tomov d26be8cbca Kernels needed for the Remhos gpu tests.
Function to setup mesh partitioning.
2025-12-23 15:27:09 -08:00
Arturo Vargas e3f710518e specify memory type in grid function constructor 2025-12-23 10:43:52 -08:00
Tzanio Kolev dc74fa2aeb Merge branch 'master' into nurbs_nodal_interp 2025-12-21 11:58:30 -08:00
Kenneth Weiss 9f8b7ed137 Fixes spaceDim after calling UpdateNURBS on the mesh
This is called after mesh.DegreeElevate()
2025-12-18 14:45:46 -08:00
Kenneth Weiss 371e7389ec Properly handle 1D curves in 2D/3D space when we don't have patches defined 2025-12-18 12:51:17 -08:00
Kenneth Weiss a49bbf288e Bugfix -- using the wrong vector dimension
Caught by sanitizer tests.
2025-12-18 11:14:38 -08:00
Kenneth Weiss f003563fcd make style 2025-12-17 19:17:07 -08:00
Kenneth Weiss b0eb063b35 Adds a unit test to procedurally generate a 1D NURBS mesh in 2D 2025-12-17 18:34:22 -08:00
Kenneth Weiss 51c140f4ff Adds a multispan nurbs-segment test mesh and updates unit tests 2025-12-17 17:51:51 -08:00
Kenneth Weiss b0ed0c81e4 Adds 3D NURBS curves meshes and tests them 2025-12-17 17:19:37 -08:00
Kenneth Weiss d7e7ac746f Renames nurbs segment mesh files to include physical dimension 2025-12-17 16:42:38 -08:00
Kenneth Weiss 1535b5a932 Adds support for loading 1D NURBS patches
Adds a 1D NURBS patch mesh along with a unit test.
2025-12-17 15:40:18 -08:00
Kenneth Weiss 10b38b4d2b Bugfix for loading 1D NURBS mesh with varying curve orders
Also updates unit test and associated data file to contain
a linear, quadratic and cubic curve.
2025-12-17 14:22:44 -08:00
Kenneth Weiss 09acac006e Adds unit test for loading uniform degree 1D NURBS mesh 2025-12-17 14:10:01 -08:00
Andrew Ho d3470c07c9 Merge branch 'master' into cmake-config 2025-12-16 12:05:27 -08:00
Ido Akkerman 4ab7f66cc8 Fix Banded Lapack solver 2025-12-16 12:09:11 +01:00
adam-sim-dev bd4f07f6cb Use MPI_C_BOOL for PETSc>=3.24.0 2025-12-16 13:51:43 +08:00
Mittal, Ketan 6f72e7f752 Merge branch 'lorentz-particleset' of https://github.com/mfem/mfem into lorentz-particleset 2025-12-15 14:33:47 -08:00
Mittal, Ketan ddde1ff8d4 mpi bool fix 2025-12-15 14:33:35 -08:00
Ketan Mittal 5b917af59b Merge branch 'master' into plbound-extremum 2025-12-15 12:59:44 -08:00
Ketan Mittal 7c09989768 Merge branch 'master' into lorentz-particleset 2025-12-15 12:59:08 -08:00
Veselin Dobrev 7794557c18 Fix potential leak (redundant allocation) in FiniteElement::GetDofToQuad.
Un-nest OpenMP critical regions with the same name, DofToQuad, to fix a
hang issue. The nested critical regions were:
NodalFiniteElement::CreateLexicographicFullMap from its critical region
called NodalFiniteElement::GetDofToQuad which has a critical region with
the same name.
2025-12-15 12:10:46 -08:00
Mittal, Ketan 495cb138ee make style and fix particle trajectory vis for 0 element case 2025-12-15 09:17:36 -08:00
Mittal, Ketan b177b2f0dc fix missing ntag argument 2025-12-14 17:02:18 -08:00
Mittal, Ketan f956c6b2de function for pargridfunction 2025-12-14 16:33:38 -08:00
Mittal, Ketan 62dbc570b2 add functions to compute min/max over all elements 2025-12-14 15:57:05 -08:00
Mittal, Ketan b494d821b1 minor 2025-12-13 16:51:59 -08:00
Mittal, Ketan f63b033c72 remove some leftover code from debugging 2025-12-13 16:51:22 -08:00
Mittal, Ketan 4d782b8fad add visualization option for a bounding box to particle trajectories 2025-12-13 16:48:20 -08:00
Mittal, Ketan fc1bd60e49 Merge branch 'master' of https://github.com/mfem/mfem into lorentz-particleset 2025-12-13 15:25:15 -08:00
Mittal, Ketan c221f5a29d initial commit 2025-12-13 15:20:43 -08:00
Mittal, Ketan 112a9871ee add back removed newline 2025-12-11 14:07:15 -08:00
Mittal, Ketan 1c1ffa875e Merge branch 'master' of https://github.com/mfem/mfem into lorentz-particleset 2025-12-11 14:05:46 -08:00
Paul Hilscher af834012d0 Merge branch 'master' into mfem-v13-mesh-reader-fix-issue-4625 2025-12-10 06:42:34 +09:00
Ido Akkerman 3f50a6f4ce Addig const, typos corrections and renaming 2025-12-05 08:54:33 +01:00
Mittal, Ketan 1e61c5e366 Merge branch 'particleset-particle-dev' of https://github.com/mfem/mfem into lorentz-particleset 2025-12-04 16:25:49 -08:00
Ido Akkerman ee0821d62f Fix memory leak 2025-12-03 12:34:23 +01:00
Ido Akkerman 9cd037dfdd Fix size error + tweaks in output and params 2025-12-03 11:55:20 +01:00
Ido Akkerman aaa828472f Fix type -- fix doc error 2025-12-03 11:54:54 +01:00
Ido Akkerman 15443a32a1 Add 3d hessian ordering top comments 2025-12-03 09:34:48 +01:00
Ido Akkerman 9360abf011 avoid name clash 2025-12-03 09:06:39 +01:00
Ido Akkerman 7475a13e6a Merge branch 'add_trivial_hessian' of github.com:mfem/mfem into add_trivial_hessian 2025-12-03 08:51:08 +01:00
Ido Akkerman 9d2df07b71 make style -- ?? 2025-12-03 08:50:25 +01:00
Ido Akkerman 7f80725ddc Update test_calchessian.cpp 2025-12-02 19:27:03 +01:00
Mittal, Ketan bc9ba8c8da merge and resolve conflicts 2025-12-02 09:47:10 -08:00
Mittal, Ketan 7718b37ecf formatting 2025-12-02 09:44:45 -08:00
Ido Akkerman 10efeb79d1 Improved comments 2025-12-02 17:27:30 +01:00
Ido Akkerman bdd9db4892 Add unit test to cmake 2025-12-02 17:14:10 +01:00
Ido Akkerman c0f61c5cb4 Changing comments for changed constructor 2025-12-02 17:12:54 +01:00
Ido Akkerman 85a4d88e2a NURBS HESSIAN ERRORgit add fem/fe/fe_nurbs.cppgit add fem/fe/fe_nurbs.cpp 2025-12-02 17:00:58 +01:00
Ido Akkerman fd7efca993 Add unit test for hessian 2025-12-02 17:00:14 +01:00
Ido Akkerman 742db7c701 Improve KnotVector constructor 2025-12-02 16:59:36 +01:00
Ido Akkerman 9a47796ea3 Add trivia hessians 2025-12-02 16:59:06 +01:00
Nuno Nobre f724cf348a Add toggle for SuperLU_DIST device offload 2025-12-02 14:23:05 +00:00
Andrew Ho 06a15cb7a9 missed one old unsetting of shared_link_flag 2025-12-01 17:02:05 -08:00
Andrew Ho d19ff6c676 Merge branch 'master' into cmake-config 2025-12-01 12:33:24 -08:00
Ido Akkerman 62bbb917ca Remove non-nurbs examples 2025-12-01 13:26:52 +01:00
Ido Akkerman 28d95ecf0c Remove non-nurbs examples 2025-12-01 13:26:36 +01:00
Joseph Signorelli 54cb56988b rm multivector.cpp from CMakeLists.txt in linalg 2025-11-29 11:06:58 -06:00
Joseph Signorelli 09dddd6f11 style 2025-11-29 11:04:33 -06:00
Joseph Signorelli 91590f39c3 Remove multivector test and from CMakeLists 2025-11-29 11:03:14 -06:00
Joseph Signorelli 161278cd30 Remove multivector files 2025-11-29 10:59:56 -06:00
Mittal, Ketan fe3251bf02 Merge branch 'particleset-particle-dev' of https://github.com/mfem/mfem into lorentz-particleset 2025-11-25 17:46:32 -08:00
Mittal, Ketan da4f94e9ef merge master and resolve conflicts 2025-11-25 14:51:18 -08:00
Mittal, Ketan 628818b2f1 merge and clean up lorentz 2025-11-25 14:47:54 -08:00
Andrew Ho d85fbc6504 review suggestions 2025-11-25 14:35:38 -08:00
Andrew Ho 29346a87b6 Merge branch 'master' into cmake-config 2025-11-25 14:31:21 -05:00
Mittal, Ketan c9cf8d080d minor 2025-11-25 11:29:39 -08:00
Ido Akkerman b51338e308 Correct DEPRECATE statement 2025-11-17 08:15:31 +01:00
EB Chin 1e7f897efb fixes for L2 space transfer 2025-11-12 16:31:18 -08:00
EB Chin 46de4f5911 ensure calls work on zero element meshes 2025-11-12 15:58:27 -08:00
Mittal, Ketan e51ea52ca4 merge upstream changes and fix redistribute to account for removed particles in lorentz 2025-11-07 14:17:00 -08:00
Andrew Ho 003afb8a4c Merge branch 'master' into hybridization-gpu-amr 2025-10-28 14:00:27 -07:00
Andrew Ho 3464f7a004 Merge branch 'master' into cmake-config 2025-10-28 11:08:38 -07:00
John Camier ce8cd01cfd Merge branch 'master' into debug-mem-silent 2025-10-28 10:20:51 -07:00
John Camier a60baf8ce6 Merge branch 'master' into debug-mem-silent 2025-10-25 11:28:07 -07:00
Andrew Ho 7de48e47ad Merge branch 'master' into cmake-config 2025-10-24 09:24:50 -07:00
Nuno Nobre faaaa4b62a Remove only (explicit) occurence of NDEBUG 2025-10-21 22:40:23 +01:00
Andrew Ho 70814c640b fixes for hip 2025-10-20 14:01:50 -07:00
Andrew Ho e9d3ae80f7 remove debug printout 2025-10-20 13:30:20 -07:00
Andrew Ho c8efc23c12 seems to be building external laghos now 2025-10-20 13:26:04 -07:00
Andrew Ho f26eb33252 Merge remote-tracking branch 'base/cmake-gpu' into cmake-config 2025-10-20 10:25:58 -07:00
John Camier 96bba18449 Merge branch 'master' into debug-mem-silent 2025-10-20 09:36:28 -07:00
Andrew Ho 05e622f837 improving config.mk file generated by cmake to work with hip/cuda
Still need to export compiler flags
2025-10-20 08:33:17 -07:00
Nuno Nobre 888c2bc308 Keep attribute-to-marker special case for miniapps only 2025-10-18 15:13:54 +01:00
Tzanio Kolev de3f769f49 Merge branch 'master' into dc-ofstream-fix-minor 2025-10-16 06:51:38 -07:00
Tzanio Kolev b2ab00eec7 Merge branch 'master' into nurbs_nodal_interp 2025-10-16 06:49:45 -07:00
Ido Akkerman 5e6e2fdd83 Add examples to documentation and add capability to changelog 2025-10-16 10:05:26 +02:00
Mark L. Stowell e9f84b033f Merge branch 'master' into phys-range-dim 2025-10-15 06:49:33 -07:00
Nuno Nobre 1b10de0da7 Refactor redundant implementation of AttrToMarker 2025-10-13 20:45:53 +01:00
Nuno Nobre 61587437e5 Allow constructing/updating PWConstCoefficient with a temp Vector 2025-10-13 20:45:53 +01:00
Nuno Nobre bf21910fe4 Fix submesh attributes documentation 2025-10-13 20:45:53 +01:00
Nuno Nobre 99aa716c89 Fix fec documentation table 2025-10-13 20:45:49 +01:00
Nuno Nobre 5484856fc0 Fix typos in code documentation comments 2025-10-13 20:41:45 +01:00
Joseph Signorelli 2a013af660 Update tests in makefile 2025-10-10 16:52:29 -05:00
Joseph Signorelli 2bf7cff7b4 style 2025-10-10 16:52:19 -05:00
Joseph Signorelli fa41baa1c8 Require MFEM_USE_GSLIB to build Lorentz 2025-10-10 16:52:05 -05:00
Joseph Signorelli 6558294943 Implement ParticleSet into Lorentz 2025-10-10 16:34:31 -05:00
Joseph Signorelli 85b8bfb57d Squashed commit of the following:
commit a660b5fc07
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 16:14:12 2025 -0700

    Potential fix to std::iota not found for windows build

commit 502e422d4b
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 15:47:32 2025 -0700

    Potential fix to Particle::tags memory leak

commit a97a13a342
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 15:28:26 2025 -0700

    Minor documentation improvements

commit 65a95551ea
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 14:56:04 2025 -0700

    Fix another int comparison w/ std::size_t

commit 9fb85d2d0b
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 14:42:53 2025 -0700

    Fix remaining -Wall

commit 99cdb577fb
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 14:23:35 2025 -0700

    Fix unused const variable (for when MFEM_USE_GSLIB not defined)

commit 4c36ae0f47
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 13:42:53 2025 -0700

    Fix initialize of std::string w/ nullptr

commit ad839667c0
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 12:46:47 2025 -0700

    Single-precision

commit 8e058595b4
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 11:28:43 2025 -0700

    fix reorder-ctor error

commit e06f1a4267
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 11:21:28 2025 -0700

    use std::size_t for loops over std .size() types

commit eef84c7a10
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 11:07:12 2025 -0700

    Do not build navier_particles + navier_bifurcation if not MFEM_USE_GSLIB, in makefile

commit 916d14d2b7
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 11:06:56 2025 -0700

    Fix use of string after lifetime ends

commit 00dc6d2780
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 15:56:04 2025 -0700

    fix test errors

commit dfc786fbbf
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 15:31:48 2025 -0700

    Fix docs

commit 1f8dbc7bfe
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 15:20:23 2025 -0700

    Fix doc

commit 194f3005bb
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 15:16:46 2025 -0700

    Add channel2.mesh

commit 05103d26a9
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:42:27 2025 -0700

    Add clean to makefile for bifurcation

commit 6a6f5e4d23
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:40:59 2025 -0700

    Add navier bifurcation (+ output) to gitignore

commit 5dd665f37b
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:38:00 2025 -0700

    minor

commit f5d33d661a
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:37:18 2025 -0700

    style NavierParticles

commit 217b3d2d2d
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:36:58 2025 -0700

    Add Navier_Bifurcation

commit 5974bfbafb
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:36:27 2025 -0700

    Add GetCurrentVorticity to Navier

commit 05da808856
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:13:22 2025 -0700

    Add NavierParticles class

commit 7d159da97c
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 13:36:06 2025 -0700

    Add particles_redist miniapp

commit b6d6473d36
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 11:57:52 2025 -0700

    Formatting + style

commit 9ff5d24102
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 11:50:34 2025 -0700

    serial compile bug fixes

commit 3dd9427c7e
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 11:50:16 2025 -0700

    Fix bug when compiling w/o GSLIB

commit 0d0c02b715
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 11:12:34 2025 -0700

    Add miniapp common particle functions + ParticleTrajectories class

commit 355e434575
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 11:09:53 2025 -0700

    Add particles_extras.cpp/hpp to miniapps/common

commit f8fa4854bf
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 11:01:00 2025 -0700

    Add particle/particleset unit test.

commit bbed72b3c6
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 10:47:42 2025 -0700

    Add ParticleSet class

commit f377c63ea7
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 10:40:56 2025 -0700

    Add Particle class

commit ed80737a9a
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 10:32:22 2025 -0700

    Create particleset.cpp/hpp

commit 6aba0652f1
Merge: f85ee8391d 715ab0a328
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:48:37 2025 -0700

    Merge branch 'multivector-dev' into particleset-particle-dev

commit f85ee8391d
Merge: 915853cee0 86405d95a2
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:48:09 2025 -0700

    Merge branch 'fdpts-improve-dev' into particleset-particle-dev

commit 715ab0a328
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:35:47 2025 -0700

    Fix typo causing doc fail

commit 160100e0b3
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:27:19 2025 -0700

    style

commit 997942b44e
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:21:43 2025 -0700

    Add MultiVector w/ unit tests

commit a1bb9cfe9f
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:51:59 2025 -0700

    style

commit 2489dce8a0
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:49:39 2025 -0700

    Add Vector::Reserve

commit 4ea338fe53
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:44:55 2025 -0700

    Add Vector::DeleteAt w/ unit test

commit eb5a0eb132
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:39:29 2025 -0700

    Add Array::DeleteAt w/ unit test.

commit 236ba45fb9
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:11:52 2025 -0700

    Add Ordering::Reorder w/ unit test

commit e23975a2d8
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:10:41 2025 -0700

    Add test_multivector.cpp

commit 769d2914c8
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:02:37 2025 -0700

    Move Ordering to multivector.hpp/cpp

commit 5c87a6c665
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 15:47:17 2025 -0700

    Create new files multivector.cpp/hpp

commit 915853cee0
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:51:59 2025 -0700

    style

commit a52599d4cc
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:49:39 2025 -0700

    Add Vector::Reserve

commit 0d5b13c4aa
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:44:55 2025 -0700

    Add Vector::DeleteAt w/ unit test

commit dda6b0dbe1
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:39:29 2025 -0700

    Add Array::DeleteAt w/ unit test.
2025-10-10 15:14:56 -05:00
Ido Akkerman 13727dace4 Change projection name in parallel 2025-10-08 13:35:14 +02:00
Ido Akkerman b47c3f4b94 Make style 2025-10-08 13:23:01 +02:00
Ido Akkerman 02dfb6319f Rename projection types3 + change timestep 2025-10-08 13:10:48 +02:00
Ido Akkerman 9e28f2da81 Rename projection types2 2025-10-08 13:10:32 +02:00
Ido Akkerman 749d2c0b66 Rename projection types 2025-10-08 13:10:06 +02:00
Ido Akkerman bdd476b87e remove files 2025-10-03 11:40:48 +02:00
Ido Akkerman 29bbdd4694 update gitignore 2025-10-02 13:28:09 +02:00
Ido Akkerman cd6bcb0890 Add files to ignore list 2025-10-02 12:29:03 +02:00
Ido Akkerman 4b6f25a743 Change default values for nurbs_ex10 2025-10-02 12:25:19 +02:00
Ido Akkerman 26937bdd2b Small cosmetic changes 2025-10-02 11:50:59 +02:00
John Camier f9cce3ab62 Merge branch 'master' into debug-mem-silent 2025-09-29 09:25:14 -07:00
John Camier 292700bb52 Merge branch 'master' into debug-mem-silent 2025-09-25 15:58:22 -07:00
Ido Akkerman 9c8d50656f Merge branch 'master' into nurbs_nodal_interp 2025-09-23 12:43:27 +02:00
John Camier fd2f0df34f Merge branch 'master' into debug-mem-silent 2025-09-21 20:13:41 -07:00
John Camier 4ac41a6427 Merge branch 'master' into debug-mem-silent 2025-09-21 10:27:05 -07:00
Andrew Ho ed862050b2 Merge branch 'master' into warn-gridfunc 2025-09-17 10:51:29 -07:00
Tzanio Kolev 3c6c1eb634 Merge branch 'master' into najlkin/extrd-1d-vec 2025-09-17 03:30:23 -07:00
Jan Nikl 22851a9463 Merge branch 'master' into najlkin/extrd-1d-vec 2025-09-16 15:30:43 -07:00
Jan Nikl 38df8156b9 Added documentation and checks to the extrusion classes. 2025-09-16 01:46:22 -07:00
Ido Akkerman 26b618aef7 Improved demko routine, also added demko tests for each order 2025-09-12 10:59:44 +02:00
Ido Akkerman d3bcc68e2a Improve demko compute routine 2025-09-08 15:48:53 +02:00
Tzanio Kolev 58826d64c9 Merge branch 'master' into debug-mem-silent 2025-08-31 15:32:36 -07:00
Will Pazner 7714f8f42c Move Hasher to hash_util.hpp, add TupleHasher
Remove specializations of std::hash for non-user-defined types.
2025-08-26 15:31:14 -07:00
Victor DeCaria a126203ccd implement suggested change 2025-08-21 15:08:57 -06:00
victor-decaria-nnl 6656a7ef72 Merge branch 'master' into debug-mem-silent 2025-08-20 15:50:34 -04:00
Veselin Dobrev 542467fd6a Merge branch 'master' into globalvec_debug 2025-08-16 16:26:36 -07:00
Ido Akkerman 694e78eb39 Remove debud stuff from nurbs example 2025-08-14 12:14:55 +02:00
Ido Akkerman 883acbc190 Add array of spaces test case to nursb miniapps 2025-08-13 16:30:07 +02:00
Ido Akkerman 70b021c228 Add projection type flag 2025-08-13 16:29:27 +02:00
Will Pazner 1c1f622b7d Add ex4 and ex4p sample runs for EA + HB + GPU 2025-08-08 10:37:24 -07:00
Will Pazner 16f1935531 Fix alias memory bug in GetLVectorFaceNbrData
gf.ExchangeFaceNbrData() may change the pointer validity of the underlying
(aliased) vector, and so the base vector's flags need to be synced.
2025-08-08 10:37:24 -07:00
Will Pazner a402b4e9b2 HostRead in SparseMatrix::BooleanMultTranspose 2025-08-08 10:37:24 -07:00
Will Pazner d269b25c17 Fix zero rows in hybridization with nonconforming ghost faces 2025-08-08 10:37:24 -07:00
Will Pazner 7573b7c9fa Support non-hybridized EA in ex4 and ex4p 2025-08-08 10:37:24 -07:00
Will Pazner 56dfb0e67f Support nonconforming AMR in GPU hybridization 2025-08-08 10:37:24 -07:00
Will Pazner 3474158bf6 Consistent naming of gather and scatter in L2InterfaceFaceRestriction 2025-08-08 10:37:24 -07:00
Will Pazner 93a2f318e0 Use unique_ptr in ParBilinearForm::FormLinearSystem 2025-08-08 10:37:24 -07:00
Will Pazner 4a5ae97be5 Support nonconforming meshes in L2InterfaceFaceRestriction 2025-08-08 10:37:24 -07:00
Will Pazner 186105c664 Add ParFiniteElementSpace::GetFaceNbrGlobalDofMapArray
Returns a reference to the Array object for GPU access
2025-08-08 10:37:24 -07:00
Will Pazner 8df6973bc7 Small fix for AMR in normal trace jump EA integrator 2025-08-08 10:37:24 -07:00
Will Pazner 2cc76c588b Remove assertions triggered when ParNCMesh::GetFaceNeighbors is called more than once 2025-08-08 10:37:24 -07:00
Will Pazner 8096c493e8 Support GPU hybridization + nonconforming AMR in serial 2025-08-08 10:37:24 -07:00
Will Pazner c0fe8c599b Handle AMR faces in L2InterfaceFaceRestriction 2025-08-08 10:37:24 -07:00
Will Pazner 7cda1566e2 Support AMR meshes in NormalTraceJumpIntegrator::AssembleEAInteriorFaces
Handle map type INTEGRAL in InterpolationManager.

For point matrices corresponding to non-conforming faces, the Jacobian may be
inverted.
2025-08-08 10:37:24 -07:00
Will Pazner e83191f54e In InterpolationManager::GetCoarseToFineInterpolation, don't flip point matrix
Flipping the point matrix causes negative Jacobians. Instead, reverse row
indices of the interpolation matrix.
2025-08-08 10:37:24 -07:00
Will Pazner 985dfe2749 Cache InterpolationManager in FiniteElementSpace
The InterpolationManager used in ParNCH1FaceRestriction is still a bit
different.
2025-08-08 10:37:24 -07:00
Will Pazner e275737aa9 Fix comment in PermuteFace2D 2025-08-08 10:37:24 -07:00
Will Pazner 91b4825cca Use unique_ptr for face restrictions in FiniteElementSpace 2025-08-08 10:37:24 -07:00
Will Pazner 4c0a122240 Doxygen for FaceInformation 2025-08-08 10:37:24 -07:00
Will Pazner db4060cf77 Add specialization of std::hash for tuple and pair
Remove ad hoc hashing functions used elsewhere
2025-08-08 10:37:24 -07:00
Will Pazner 34addd59c5 Fix shadowed variables 2025-08-08 07:01:54 -07:00
Will Pazner 8caddf1738 Default constructor is already implicitly deleted 2025-08-08 07:01:54 -07:00
Will Pazner d9ca28ba43 Use unordered_map instead of map
We don't need sorted access
2025-08-08 07:01:54 -07:00
Will Pazner a331a1951b Remove "not implemented yet" comments from functions that have been implemented 2025-08-08 07:01:54 -07:00
Will Pazner 336f1f8f35 Remove unnecessary scope 2025-08-08 07:01:54 -07:00
Ido Akkerman 178acf2113 Make style 2025-07-18 15:40:00 +02:00
Ido Akkerman bcc475d13c Add local L2 projection for NURBS VectorFE 2025-07-18 15:38:36 +02:00
Ido Akkerman c2e9390a36 Add small Row L2 utility to densematrix 2025-07-18 15:38:09 +02:00
Ido Akkerman c390f35b95 Add L2 local projection for the VectorFE case -- also in parallel 2025-07-18 09:34:03 +02:00
Ido Akkerman ccb013a4ab Fix mem leak 2025-07-17 15:56:18 +02:00
Ido Akkerman 6f83f57737 remove space in name 2025-07-17 15:56:05 +02:00
Ido Akkerman c01fefe638 Remove nurbs_ex24p, and clean nurbs_ex24 2025-07-17 15:43:58 +02:00
Ido Akkerman a96f2e5227 Adding local L2 projection for vectorcoeff on array of FE. Also add parallel LocalL2 Projection 2025-07-17 14:36:34 +02:00
Ido Akkerman 75c7e1e350 Clean nurbs_ex10p 2025-07-17 14:34:48 +02:00
Ido Akkerman cfd21dd69e Merge remote-tracking branch 'origin/vector_coeff_comp' into nurbs_nodal_interp 2025-07-17 13:31:35 +02:00
Ido Akkerman 0d1dfae3d7 Parallel version of nurbs_ex10 2025-07-17 12:50:05 +02:00
Ido Akkerman e7157ad835 Convert ex10 for NURBS -- to check projection of vectorcoeff on fespace of an array of fe 2025-07-17 12:29:17 +02:00
Ido Akkerman 8fd826dfbf Fix shadow 2025-07-17 09:41:14 +02:00
Ido Akkerman 080361c668 Fix documenation 2 2025-07-17 09:39:33 +02:00
Ido Akkerman cc8ba26bbb Fix documenation 2025-07-17 09:39:10 +02:00
Ido Akkerman 70dcb6902d Merge fixes and inspired improvements 2025-07-17 09:24:26 +02:00
thartland 5986542e3d VERIFY instead of ASSERT 2025-07-16 16:02:21 -07:00
Tucker Hartland 5163313285 style 2025-07-16 15:46:46 -07:00
thartland 2201f3354a adding a check to make sure that each process owns at least one entry of the HypreParVector prior to calling GlobalVector 2025-07-16 15:36:57 -07:00
Ido Akkerman 71050660b8 Fix merge error 2025-07-16 17:54:12 +02:00
Ido Akkerman 817e3b340d Make style 2025-07-16 17:47:49 +02:00
Ido Akkerman a5e64f7c80 Merge branch 'master' into nurbs_nodal_interp 2025-07-16 17:44:48 +02:00
Ido Akkerman ec69300bc1 Merge branch 'master' into nurbs_nodal_interp 2025-07-16 17:37:21 +02:00
Ido Akkerman 946a396b33 Fix nurbs_ex24 2025-07-16 17:32:19 +02:00
Ido Akkerman 095cc69a45 Adding preliminary implementation of LocalL2 projection 2025-07-16 17:11:55 +02:00
Ido Akkerman 479c2f7cc0 Revert back to master II 2025-07-16 15:56:46 +02:00
Ido Akkerman 4c5181bddb Revert back to master 2025-07-16 15:49:52 +02:00
Ido Akkerman 704c150d70 Change all examples back to master version 2025-07-16 15:38:41 +02:00
Ido Akkerman 08d5a2a44f Change back mesh and fespace 2025-07-16 15:29:31 +02:00
Ido Akkerman 4f575e6708 Remove NURBS fecollection selection routines 2025-07-16 14:43:41 +02:00
Ido Akkerman 1d7c4785fa Add vector and matrix component coefficient 2025-07-16 13:56:44 +02:00
Tzanio Kolev e60f43fff3 Merge branch 'master' into ex37 2025-07-01 15:02:18 -07:00
Tzanio Kolev 771f947918 Merge branch 'master' into nurbs_nodal_interp 2025-07-01 12:46:46 -07:00
Mark L. Stowell 83fd119b95 Merge branch 'master' into phys-range-dim 2025-07-01 10:16:58 -07:00
John Camier 8804df317d Merge branch 'master' into debug-mem-silent 2025-07-01 09:51:06 -07:00
Noe Reyes 5e51751064 Merge branch 'master' into ex37 2025-06-27 19:10:28 -04:00
thatguynoe d87bc4d22c remove signum function 2025-06-27 19:09:47 -04:00
thatguynoe 29dd96acf3 use the Illinois method instead of bisection
Speeds up convergence for the Bregman projection.
2025-06-27 19:09:47 -04:00
Veselin Dobrev 7023ecd83b Merge branch 'master' into nurbs_nodal_interp 2025-06-24 15:26:54 -07:00
Veselin Dobrev 54300f99ab Small formatting changes in nurbs_ex24.cpp 2025-06-24 12:07:40 -07:00
Justin Laughlin efe2804020 Add global projection option to nurbs_ex24 (default true) 2025-06-23 10:46:44 -07:00
Justin LaughlinandVeselin Dobrev 7b2c295670 Update fem/gridfunc.cpp
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2025-06-23 09:31:50 -07:00
John Camier 95408b0fae Merge branch 'master' into debug-mem-silent 2025-06-22 20:25:51 -07:00
Justin Laughlin b872e07a4a Add GetRangeType(2) to ProjectCoefficientGlobalL2 check 2025-06-19 13:04:00 -07:00
Justin Laughlin 8f152bd7ad Change nurbs_ex24 ProjectCoefficient -> ProjectCoefficientGlobalL2 2025-06-19 12:19:57 -07:00
John Camier 79819a5563 Merge branch 'master' into debug-mem-silent 2025-06-18 10:22:04 -07:00
Veselin Dobrev 1ce8a82200 Updates related to DofTransformation modifications in 'master' 2025-06-17 21:34:31 -07:00
Veselin Dobrev 05c5bae7bf Merge branch 'master' into nurbs_nodal_interp
Resolved conflicts:
   fem/gridfunc.cpp
2025-06-17 21:27:19 -07:00
Tzanio Kolev e30f5b9c96 Merge branch 'master' into ex37 2025-06-17 08:16:18 -07:00
Andrew Ho f5b03af9d6 Merge branch 'master' into warn-gridfunc 2025-06-16 12:20:24 -07:00
John Camier d57fc7c0d9 Merge branch 'master' into debug-mem-silent 2025-06-16 08:33:43 -07:00
Veselin Dobrev 5c0587765f Updates to address issues when mering this PR in 'next' 2025-06-14 23:12:52 -07:00
John Camier 9e140eecfa Merge branch 'master' into nurbs_nodal_interp 2025-06-14 10:54:54 -07:00
camierjs 4a46614e33 Guard doftrans usage 2025-06-14 09:27:34 -07:00
camierjs 2bef31bee0 Avoid using internal DofTransformation object in gridfunc 2025-06-14 09:12:16 -07:00
John Camier 9fb590d79d Merge branch 'master' into debug-mem-silent 2025-06-13 08:48:05 -07:00
Justin Laughlin 7feb9341b3 Fix warning from overloaded FiniteElement::Project in NURBS FE classes 2025-06-10 15:56:01 -07:00
Justin Laughlin 33e88aa7ad Allow Demko points to be recomputed 2025-06-10 15:36:23 -07:00
Justin Laughlin 47335190e0 Add some documentation 2025-06-10 15:30:09 -07:00
Justin Laughlin b02c99b9ef Revert FiniteElementCollection changes in examples 2025-06-10 15:18:28 -07:00
Justin Laughlin 96f6292915 Add NURBSext check to GroupComm in GridFunction::ProjectCoefficient 2025-06-10 14:21:37 -07:00
Victor DeCaria cb4ca9228f add option to disable protection with debug backend 2025-06-05 09:34:25 -06:00
Andrew Ho 80c7823ac7 Merge branch 'master' into warn-gridfunc 2025-06-03 11:26:09 -07:00
Andrew Ho a443f003bb Merge pull request #4851 from mfem/najlkin/warn-gridfunc
Vector dimension for bdr/face elements
2025-06-02 11:45:47 -07:00
thatguynoe f6979648e8 move boundary assembly into bilinear form assembly
Prevents the user from accidentally calling these methods in the wrong order.
2025-05-30 09:17:52 -07:00
thatguynoe 2a4decc635 use the bisection method instead of Newton 2025-05-29 12:33:49 -07:00
thatguynoe b9d19d3bb3 Merge branch 'master' into ex37 2025-05-29 11:30:21 -07:00
Justin Laughlin 59142c46bd Merge branch 'master' into nurbs_nodal_interp 2025-05-29 10:21:19 -07:00
Brendan Keith d8da041edf Merge branch 'master' into ex37 2025-05-26 13:24:47 -04:00
Mark L. Stowell 4aecb86d71 Merge branch 'master' into phys-range-dim 2025-05-19 17:51:08 -07:00
Andrew Ho 1730b05078 Merge branch 'master' into warn-gridfunc 2025-05-12 14:04:42 -07:00
Stowell, Mark L. 776a4c1815 Updating unit tests 2025-05-11 14:40:05 -07:00
Stowell, Mark L. c870d7dc1c Using new MapType entries and implementing new GetPhys*Dim methods 2025-05-11 14:39:49 -07:00
Stowell, Mark L. 8519889074 Adding new MapType entries for R2D and R1D classes 2025-05-11 14:38:50 -07:00
Jan Nikl 8a522f5e7d Fixed submesh unit test. 2025-05-07 16:26:34 -07:00
Jan Nikl fcbd105b82 Fixed ParGridFunction projection checks. 2025-05-07 15:28:54 -07:00
Jan Nikl b82dcf1387 Fixed variable order vector element unit tests. 2025-05-07 15:16:36 -07:00
Jan Nikl d3471aef59 Cosmetic change in FiniteElementSpace::GetTypicalBE(). 2025-05-07 14:35:50 -07:00
Jan Nikl 822555df0b Fixed boundary projection checks in GridFunction. 2025-05-07 14:23:33 -07:00
Jan Nikl 4626d65ac1 Added *VectorDim shortcuts to GridFunction. 2025-05-07 13:37:35 -07:00
Jan Nikl 38a80ea0e4 Added methods for typical elements and vector dimension for bdr/face. 2025-05-07 13:28:46 -07:00
Jan Nikl 590f954d6f Replaced the special case for trace spaces in GetVectorDim() by a check. 2025-05-07 11:58:01 -07:00
Jan Nikl bc5fc2b0f3 Revert "fixed ProjectBdrCoefficient vdim verify check"
This reverts commit feecd75ff3.
2025-05-07 11:55:25 -07:00
Justin Laughlin d06558db12 Merge branch 'master' into nurbs_nodal_interp 2025-05-05 15:59:41 -07:00
Paul Hilscher 7994a3df8b fix unsigned signed comparison warning 2025-04-29 07:42:24 +09:00
Paul Hilscher 5bb0c458cd remove unused to address ci failure 2025-04-29 07:18:09 +09:00
Paul Hilscher c5b2f0945a update CMakeList to include correct unit test 2025-04-29 07:02:52 +09:00
Paul Hilscher 1b0425bfe9 add unit test for named mesh attributes 2025-04-29 06:58:39 +09:00
Tzanio Kolev ab52f334e2 Merge branch 'master' into mfem-v13-mesh-reader-fix-issue-4625 2025-04-26 12:25:30 -07:00
Paul Hilscher f8c494e59c fallback to tracking attributes as seek might not be available 2025-04-21 09:25:38 +09:00
Paul Hilscher f6d304864b fix parsing 2025-04-20 19:30:12 +09:00
Paul Hilscher 3593b4cd60 apply style 2025-04-20 09:17:18 +09:00
Paul Hilscher ef557b3fc1 add some more ws 2025-04-20 09:00:01 +09:00
Paul Hilscher 9a94a4b7b8 allow arbitrary white spaces 2025-04-20 08:59:04 +09:00
Paul Hilscher e18518d731 sort ex39 entry 2025-04-20 06:49:12 +09:00
Paul Hilscher e49bf21914 fix mfem v13 mesh format reader 2025-04-20 06:49:12 +09:00
Tzanio Kolev 0f78d8aa5c Merge branch 'master' into najlkin/extrd-1d-vec 2025-04-15 13:46:39 -07:00
Andrew Ho 3f98aa1cfb Merge branch 'master' into warn-gridfunc 2025-04-14 16:15:59 -07:00
Andrew Ho feecd75ff3 fixed ProjectBdrCoefficient vdim verify check 2025-04-11 22:39:33 -07:00
Andrew Ho 248bdcc149 revert change in GridFunction::GetGradient 2025-04-11 20:49:28 -07:00
Andrew HoandVeselin Dobrev e4e354834d Update fem/gridfunc.cpp
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com>
2025-04-11 20:47:15 -07:00
Andrew Ho d64a6d6255 Change GetVectorDim so it works for trace spaces.
Re-added boundary projection vector dim checks
2025-04-11 18:58:09 -07:00
Andrew Ho 510387a605 remove checks in Bdr projections
I think something more clever needs to be done here for projecting
onto trace elements
2025-04-11 17:23:44 -07:00
Andrew Ho e99b2a8410 Switched to VectorDim(), added checks for VectorCoefficient projection 2025-04-11 16:07:31 -07:00
Andrew Ho 6608111315 Added error checks for scalar coefficient projection onto a vector GridFunction 2025-04-11 14:39:06 -07:00
Jan Nikl b7253275fc Added extrusion of vector 1D grid functions. 2025-04-01 17:49:16 -07:00
thatguynoe 5808fc6966 use gradient descent step length in proj
See https://github.com/mfem/mfem/pull/4645#discussion_r1898110950.
2025-02-25 19:21:07 -05:00
thatguynoe b40bf6a64d Revert "add option to choose bisection method for roots"
This reverts commit 21778cd9335337a1419af482a7feaf6baac1057f.
2025-02-25 18:31:42 -05:00
thatguynoe 7a73e97922 Revert "rename newton arg for clarity"
This reverts commit d7681c26dc608bfab1ca4c891e22cbc1260340c6.
2025-02-25 18:31:42 -05:00
thatguynoe 3a97122e34 rename newton arg for clarity 2025-02-25 18:31:42 -05:00
thatguynoe 2f89a16314 update sample runs, fix stability 2025-02-25 18:31:42 -05:00
thatguynoe 0cd8c2e273 delete bilinear form when cleaning 2025-02-25 18:31:42 -05:00
thatguynoe b4992673b2 fix ex37 serial
If running ex37 serial with MFEM parallel, a segfault would occur when attempting to run MPI_Allreduce. To fix this, we use the associated FiniteElementSpace and check for MFEM parallel.
2025-02-25 18:31:42 -05:00
thatguynoe 46dce17970 fix ex37 serial
If running ex37 serial with MFEM parallel, a segfault would occur when attempting to run MPI_Allreduce. To fix this, we use the associated FiniteElementSpace and check for MFEM parallel.
2025-02-25 18:31:42 -05:00
thatguynoe f080627cba move ParGridFunction declaration 2025-02-25 18:31:42 -05:00
thatguynoe 85fb20a1d1 set smaller itol for better convergence 2025-02-25 18:31:42 -05:00
thatguynoe 428d203eac add option to choose bisection method for roots 2025-02-25 18:31:42 -05:00
thatguynoe c10ca25f62 assemble boundary, bilinear form outside of solve 2025-02-25 18:31:42 -05:00
thatguynoe 2e8f6f9c28 assemble boundary, bilinear form outside of solve 2025-02-25 18:31:42 -05:00
thatguynoe 11e4c46f25 add growth rate arg for grad descent step length 2025-02-25 18:31:42 -05:00
thatguynoe ff8d8752c7 move proj function into header file 2025-02-25 18:31:42 -05:00
stefanhenneking e3cfc28718 add ofstream.is_open() checks 2025-02-18 23:17:55 -06:00
Ido Akkerman 1eb05fe75c Fix bug 2024-10-03 11:06:27 +02:00
Ido Akkerman 07ed6bfb6e Merge branch 'master' into nurbs_nodal_interp 2024-10-03 11:06:10 +02:00
Ido Akkerman bb52bc02ac Merge branch 'master' into nurbs_nodal_interp 2024-09-17 12:19:29 +02:00
Ido Akkerman e4766b309a Need to make function virtual 2024-09-12 14:46:31 +02:00
Ido Akkerman 6a3cfb85c3 Add parallel vector projection case 2024-09-12 14:24:22 +02:00
IdoAkkerman e5fbfcf0c8 Add comment 2024-07-12 12:13:20 +02:00
IdoAkkerman 5026449f49 Correct typo 2024-07-12 12:13:07 +02:00
IdoAkkerman daf5b446a0 Remove app 2024-07-12 12:12:28 +02:00
IdoAkkerman 70ce649d6c Add commandline option 2024-07-12 12:11:52 +02:00
IdoAkkerman 4f2da87ca7 Merge remote-tracking branch 'origin/master' into nurbs_nodal_interp 2024-07-11 10:25:54 +02:00
IdoAkkerman 67e13d9c40 Fix parallel solve + comment + remove pointer + make style 2024-07-11 10:25:40 +02:00
IdoAkkerman 0f85bd80c3 Typos + L2 global projection in parallel 2024-07-10 10:31:07 +02:00
IdoAkkerman b9a60afd77 gitignore pt2 2024-07-09 16:16:35 +02:00
IdoAkkerman f9957edc77 Add file to ignore list 2024-07-09 14:54:36 +02:00
IdoAkkerman c828c72ec6 Add comments on definition mechanism 2024-07-08 15:46:18 +02:00
IdoAkkerman 4976d446a2 Add global L2 projection to Gridfunction 2024-07-08 15:22:30 +02:00
IdoAkkerman 1594ac92c5 Fix mem error 2024-07-08 15:06:17 +02:00
IdoAkkerman 3787362e97 Remove file 2024-07-08 15:02:50 +02:00
IdoAkkerman 97a9330f71 Second round of comments 2024-07-08 10:58:15 +02:00
IdoAkkerman a52d97b44d Rename GetParam to GetKnotLocation 2024-07-05 12:21:24 +02:00
IdoAkkerman b6d7817bd6 Remaining comments addressed 2024-07-05 12:02:44 +02:00
IdoAkkerman 06c2bcbac1 Merge remote-tracking branch 'origin/master' into nurbs_nodal_interp 2024-07-05 10:25:23 +02:00
IdoAkkerman df786b2dfc Addressing most points from dylan copeland 2024-07-05 10:25:01 +02:00
IdoAkkerman 5ba2a73a37 Correct mem leak 2024-07-01 16:18:41 +02:00
IdoAkkerman 6118eb20cf Cosmetic changes 2024-07-01 13:15:24 +02:00
IdoAkkerman 2f0bb591ca Add changes to log 2024-06-27 10:01:12 +02:00
IdoAkkerman a9a687a780 Change to Botella points 2024-06-27 10:00:51 +02:00
IdoAkkerman bf27c77c86 Merge remote-tracking branch 'origin/master' into nurbs_nodal_interp 2024-06-27 09:47:44 +02:00
IdoAkkerman 217f5f70e3 Merge remote-tracking branch 'origin/master' into nurbs_nodal_interp 2024-06-21 13:46:11 +02:00
IdoAkkerman 43025ad7cb Remove cout 2024-06-17 11:50:54 +02:00
IdoAkkerman 16d03b0cdc Merge remote-tracking branch 'origin/master' into nurbs_nodal_interp 2024-06-17 10:13:41 +02:00
IdoAkkerman 6ba83329a3 make style 2024-06-17 10:13:23 +02:00
IdoAkkerman 247119adc3 SMALL important fix -- checked routines 2024-06-17 10:13:07 +02:00
IdoAkkerman e72bd42913 Add projection to NURBS Vector Fe basis 2024-06-17 09:11:22 +02:00
IdoAkkerman 3e5c4abeef Clean gridfun projection functions 2024-06-17 09:06:33 +02:00
IdoAkkerman 057732b2df Add Nodal injection test miniapp 2024-06-17 09:06:00 +02:00
IdoAkkerman 69bf849af8 Merge branch 'master' into nurbs_nodal_interp 2024-06-12 17:24:33 +02:00
IdoAkkerman 0515f4695a Fix pendantic error 2024-06-06 15:14:00 +02:00
IdoAkkerman 9463b1b68e Fix pedantic and output files - \2 2024-06-04 11:26:57 +02:00
IdoAkkerman 50bb49fd0c Fix pedantic and output files 2024-06-04 11:01:07 +02:00
IdoAkkerman d2cb937744 Merge remote-tracking branch 'origin/master' into nurbs_nodal_interp 2024-06-04 10:28:08 +02:00
IdoAkkerman d212192b27 Merge branch 'nurbs_nodal_interp' of github.com:mfem/mfem into nurbs_nodal_interp 2024-06-04 10:26:07 +02:00
IdoAkkerman 775a6e38de Bug fix 2024-06-04 10:25:59 +02:00
IdoAkkerman 2e66d2bc6d Fix deprecated 2024-06-04 10:05:43 +02:00
Ido Akkerman 8fb1804c8a Update gridfunc.cpp 2024-05-31 23:51:02 +02:00
Ido Akkerman 47dde022a3 Update gridfunc.cpp 2024-05-31 23:42:09 +02:00
Ido Akkerman d77488e91d Update nurbs.cpp 2024-05-31 23:31:49 +02:00
IdoAkkerman eee3fa1285 Remove debug statement 2024-05-31 13:12:20 +02:00
IdoAkkerman 0ce54fea42 Small bugfix 2024-05-31 13:11:59 +02:00
IdoAkkerman 04bc1180af Remove debug output 2024-05-31 12:50:36 +02:00
IdoAkkerman 710e747f05 Missing example 2024-05-31 12:48:02 +02:00
IdoAkkerman c72436d718 Allow selection of NURBSFE in some examples 2024-05-31 12:47:43 +02:00
IdoAkkerman 3ae5df47b8 Communicate in parallel 2024-05-31 12:46:35 +02:00
IdoAkkerman 9a80d45519 Switch to better signal value 2024-05-31 12:46:10 +02:00
IdoAkkerman 7764148c77 Nicer shorthand 2024-05-31 11:48:14 +02:00
IdoAkkerman c5866395f4 Add vector support 2024-05-31 11:47:33 +02:00
IdoAkkerman b01f679eb2 Simplify selection of correct fe collection 2024-05-31 10:51:24 +02:00
IdoAkkerman 9fb31e3339 Init NURBS fespace a lot easier 2024-05-31 10:50:26 +02:00
IdoAkkerman 335592d8b3 Important index fix 2024-05-31 10:49:39 +02:00
IdoAkkerman fd4e49dac7 Beautify 2024-05-30 17:34:14 +02:00
IdoAkkerman a4376f597e Small tweak to nurbs_ex1 2024-05-30 17:29:25 +02:00
IdoAkkerman 45596d0efd Non zero BCs in example -- use Coefficient Proejctor 2024-05-30 17:25:49 +02:00
IdoAkkerman 54c4bfea26 make style 2024-05-30 17:24:29 +02:00
IdoAkkerman 4bf54a7633 Further improvements to nurbs mesh info printer 2024-05-30 17:24:06 +02:00
IdoAkkerman f86e08b979 Add NURBS specific projection routine to GF 2024-05-30 17:23:29 +02:00
IdoAkkerman e3b3688c26 Add NURBS specific projection to NURBS FE 2024-05-30 17:22:53 +02:00
IdoAkkerman d109c7eb05 Add check for knot spans 2024-05-30 17:22:11 +02:00
IdoAkkerman 85d89a8dcd make style 2024-05-30 17:21:18 +02:00
IdoAkkerman deabbdd18a Add nurbs mesh infor printing miniapp 2024-05-30 14:54:46 +02:00
IdoAkkerman 477e642582 Remove debug comment 2024-05-30 14:54:15 +02:00
IdoAkkerman 99e8701696 Make functions deprecated 2024-05-30 14:53:50 +02:00
IdoAkkerman f2745a149c Switch to new, and fixed, location routines 2024-05-30 13:39:57 +02:00
IdoAkkerman 1c84b89c47 Add botella,demko,greville poins and unit test 2024-05-30 13:11:05 +02:00
IdoAkkerman bea1969e5c NURBS as nodalFE 2024-05-23 14:03:32 +02:00
Stowell, Mark L a0b8427774 Changing more license headers 2020-09-01 16:42:50 -07:00
Stowell, Mark L bd3897a7ec Changing cout to mfem::out 2020-09-01 16:41:12 -07:00
Stowell, Mark L 98039728a7 Changing license header 2020-09-01 16:40:50 -07:00
Stowell, Mark L 537f9ad677 Adding ARPACK option to ex11p 2020-09-01 16:30:27 -07:00
Stowell, Mark L 6081e24e78 make style 2020-09-01 16:03:57 -07:00
Stowell, Mark L 9779145f1a Merge remote-tracking branch 'origin/master' into arpack-dev 2020-09-01 10:43:44 -07:00
Stowell, Mark L e1576f336e Removing old initializations 2020-09-01 10:41:40 -07:00
Stowell, Mark L 673f0364de make style 2020-09-01 10:41:05 -07:00
Stowell, Mark L 90c4e55c40 Adding arpack.?pp files to CMakeLists 2020-09-01 10:34:35 -07:00
Stowell, Mark L 2f610e0170 Small improvements to ARPACK examples 2020-09-01 10:29:06 -07:00
Stowell, Mark L 35598cb6fb Adding SetOperator(Operator) methods 2020-09-01 10:28:02 -07:00
Stowell, Mark L af5003aee2 Adding new examples to make system 2020-09-01 10:27:19 -07:00
Stowell, Mark L 0e3223dd83 Changes suggested in issue #114 2020-09-01 10:23:43 -07:00
Veselin Dobrev b1ac354f59 Merge branch 'master' into arpack-dev 2020-08-27 11:12:48 -07:00
Stowell, Mark L 0147180a8b A possible replacement for ex11p 2017-02-24 01:57:30 -08:00
Stowell, Mark L 2d0a0b6c63 Adding an abstract base class for eigenvalue solvers 2017-02-24 01:56:41 -08:00
Stowell, Mark L 044ac04693 Fixed the parallel example
This needs to be cleaned up a bit or merged with ex11p.
2017-02-22 18:52:38 -08:00
Stowell, Mark L 019a983732 Run through astyle 2017-02-22 18:51:41 -08:00
Stowell, Mark L 8ff51b993c Fixing bugs in parallel implementation
Method overloading was not functioning because various methods were not
declared as ‘virtual’.

The partiitioning was computed incorrectly which lead to incorrectly
sized eigenvectors.
2017-02-22 18:51:09 -08:00
Stowell, Mark L 5d20efdbbd Adding an ARPACK version of ex11p for parallel testing
This version compares well to both ex11 and ex11p when run in serial.
However there is a bug which produces very poor solutions in parallel.
2017-02-22 02:35:08 -08:00
Stowell, Mark L eed944d75f Adding serial ARPACK examples 2017-02-21 17:22:33 -08:00
Stowell, Mark L 826f041d7f Adding ARPACK wrapper 2017-02-21 17:22:12 -08:00
Stowell, Mark L 97d4558da0 Adding ARPACK to config files 2017-02-21 17:20:55 -08:00
223 changed files with 17779 additions and 3477 deletions
+1 -1
View File
@@ -25,7 +25,7 @@ runs:
steps:
- uses: ./.github/actions/sanitize/config
- uses: actions/cache@v4
- uses: actions/cache@v5
if: ${{env.DEBUG == 'true'}}
id: debug
with:
+1 -1
View File
@@ -36,7 +36,7 @@ runs:
steps:
- uses: ./.github/actions/sanitize/config
- uses: actions/cache@v4
- uses: actions/cache@v5
if: ${{env.DEBUG == 'true' && inputs.cache-skip != 'true'}}
id: debug
with:
+5 -5
View File
@@ -23,7 +23,7 @@ inputs:
runs:
using: 'composite'
steps:
- uses: actions/cache/restore@v4 # Cache for LLVM libcxx
- uses: actions/cache/restore@v5 # Cache for LLVM libcxx
with:
path: ${{env.LLVM_DIR}}
fail-on-cache-miss: true
@@ -32,14 +32,14 @@ runs:
- uses: ./.github/actions/sanitize/mpi
if: ${{inputs.par == 'true'}}
- uses: actions/cache/restore@v4 # Cache for Hypre
- uses: actions/cache/restore@v5 # Cache for Hypre
if: ${{inputs.par == 'true'}}
with:
path: ${{env.HYPRE_DIR}}
fail-on-cache-miss: true
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
- uses: actions/cache/restore@v4 # Cache for Metis
- uses: actions/cache/restore@v5 # Cache for Metis
if: ${{inputs.par == 'true'}}
with:
path: ${{env.METIS_DIR}}
@@ -51,13 +51,13 @@ runs:
run: ln -s -f ${{env.HYPRE_DIR}} hypre && ln -s -f ${{env.METIS_DIR}} metis-4.0
shell: bash
- uses: actions/cache/restore@v4 # Cache for LSAN suppression file
- uses: actions/cache/restore@v5 # Cache for LSAN suppression file
with:
path: ${{env.LSAN_DIR}}
fail-on-cache-miss: true
key: build-lsan-suppression-file
- uses: actions/checkout@v4 # Checkout the repository
- uses: actions/checkout@v6 # Checkout the repository
with:
path: mfem
# ref: ${{env.BRANCH}}
+1 -1
View File
@@ -43,7 +43,7 @@ jobs:
remove-docker-images: 'true'
- name: Checkout
uses: actions/checkout@v4
uses: actions/checkout@v6
# It's easier to reference named variables than indexes of the matrix
- name: Set Environment
+6 -5
View File
@@ -153,7 +153,7 @@ jobs:
# /home/runner/work/mfem/mfem/mfem
# Note: Done now to access "install-hypre" and "install-metis" actions.
- name: checkout mfem
uses: actions/checkout@v4
uses: actions/checkout@v6
with:
path: ${{ env.MFEM_TOP_DIR }}
# Fetch the complete history for codecov to access commits ID
@@ -225,7 +225,7 @@ jobs:
- name: cache hypre
id: hypre-cache
if: matrix.mpi == 'par'
uses: actions/cache@v4
uses: actions/cache@v5
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-v2.5
@@ -255,7 +255,7 @@ jobs:
- name: cache metis
id: metis-cache
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
uses: actions/cache@v4
uses: actions/cache@v5
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
@@ -270,7 +270,7 @@ jobs:
- name: cache vcpkg (Windows)
id: vcpkg-cache
if: matrix.os == 'windows-latest'
uses: actions/cache@v4
uses: actions/cache@v5
with:
path: vcpkg_cache
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
@@ -295,7 +295,8 @@ jobs:
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew update
brew install enzyme
ENZYME_LLVM=$(brew info enzyme | sed -n 's/^Required:.*\(llvm[^ ]*\).*/\1/p')
ENZYME_LLVM=$(brew info enzyme | sed -n 's/^Required.*:.*\(llvm[^ ]*\).*/\1/p')
echo "ENZYME_LLVM=$ENZYME_LLVM"
LLVM_PREFIX=$(brew --prefix $ENZYME_LLVM)
echo "LLVM_PREFIX=$LLVM_PREFIX" >> $GITHUB_ENV
echo "OMPI_CC=$LLVM_PREFIX/bin/clang" >> $GITHUB_ENV
+4 -4
View File
@@ -40,11 +40,11 @@ jobs:
steps:
- name: Checkout repository
uses: actions/checkout@v4
uses: actions/checkout@v6
# Initializes the CodeQL tools for scanning.
- name: Initialize CodeQL
uses: github/codeql-action/init@v2
uses: github/codeql-action/init@v4
with:
languages: ${{ matrix.language }}
# If you wish to specify custom queries, you can do so here or in a config file.
@@ -57,7 +57,7 @@ jobs:
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
# If this step fails, then you should remove it and run the build manually (see below)
- name: Autobuild
uses: github/codeql-action/autobuild@v2
uses: github/codeql-action/autobuild@v4
# ️ Command-line programs to run using the OS shell.
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
@@ -70,4 +70,4 @@ jobs:
# ./location_of_script_within_repo/buildscript.sh
- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v2
uses: github/codeql-action/analyze@v4
+3 -3
View File
@@ -39,7 +39,7 @@ jobs:
steps:
- name: checkout MFEM
uses: actions/checkout@v4
uses: actions/checkout@v6
with:
path: mfem
@@ -50,7 +50,7 @@ jobs:
- name: Cache Hypre Install
id: hypre-cache
uses: actions/cache@v4
uses: actions/cache@v5
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-v2.5
@@ -65,7 +65,7 @@ jobs:
- name: Cache Metis Install
id: metis-cache
uses: actions/cache@v4
uses: actions/cache@v5
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
+4 -4
View File
@@ -38,7 +38,7 @@ jobs:
github.event.pull_request.head.repo.full_name != github.repository)
steps:
- name: checkout mfem
uses: actions/checkout@v4
uses: actions/checkout@v6
- name: copyright check
id: copyright
@@ -93,7 +93,7 @@ jobs:
github.event.pull_request.head.repo.full_name != github.repository)
steps:
- name: checkout mfem
uses: actions/checkout@v4
uses: actions/checkout@v6
- name: get astyle
run: |
@@ -110,7 +110,7 @@ jobs:
github.event.pull_request.head.repo.full_name != github.repository)
steps:
- name: checkout mfem
uses: actions/checkout@v4
uses: actions/checkout@v6
- name: get doxygen and graphviz
run: |
@@ -135,7 +135,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- name: checkout mfem
uses: actions/checkout@v4
uses: actions/checkout@v6
with:
fetch-depth: 0
+2 -2
View File
@@ -17,11 +17,11 @@ jobs:
runs-on: ubuntu-latest
name: 2.19.0
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- uses: ./.github/actions/sanitize/config
- name: Cache
id: cache
uses: actions/cache@v4
uses: actions/cache@v5
with:
path: ${{env.HYPRE_DIR}}
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
+2 -2
View File
@@ -27,13 +27,13 @@ jobs:
llvm_use_sanitizer: "Undefined"
name: ${{matrix.sanitizer}}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- uses: ./.github/actions/sanitize/config
with:
NO_FLAGS: true
- name: Cache
id: cache
uses: actions/cache@v4
uses: actions/cache@v5
with:
path: ${{env.LLVM_DIR}}
key: build-libcxx-${{env.LLVM_VER}}-${{matrix.sanitizer}}
+2 -2
View File
@@ -17,11 +17,11 @@ jobs:
runs-on: ubuntu-latest
name: lsan.supp
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- uses: ./.github/actions/sanitize/config
- name: Cache
id: cache
uses: actions/cache@v4
uses: actions/cache@v5
with:
path: ${{env.LSAN_DIR}}
key: build-lsan-suppression-file
+2 -2
View File
@@ -17,11 +17,11 @@ jobs:
runs-on: ubuntu-latest
name: 4.0.3
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- uses: ./.github/actions/sanitize/config
- name: Cache
id: cache
uses: actions/cache@v4
uses: actions/cache@v5
with:
path: ${{env.METIS_DIR}}
key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
+7 -7
View File
@@ -28,7 +28,7 @@ jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- uses: ./.github/actions/sanitize/mfem
with:
par: ${{inputs.par}}
@@ -40,7 +40,7 @@ jobs:
env:
ex: ${{inputs.par && 'ex1p' || 'ex1'}}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- uses: ./.github/actions/sanitize/restore
id: restore
with:
@@ -58,7 +58,7 @@ jobs:
env:
exclude: ${{inputs.par && '-E "_ser"' || ''}}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- uses: ./.github/actions/sanitize/restore
id: restore
with:
@@ -82,7 +82,7 @@ jobs:
env:
exclude: ${{inputs.par && '-E "_ser"' || ''}}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- uses: ./.github/actions/sanitize/restore
id: restore
with:
@@ -107,7 +107,7 @@ jobs:
run: ${{inputs.par && '-R "_cpu_np"' || ''}}
exclude: ${{inputs.par && '"unit_tests|debug"' || '"^unit_tests$|debug"'}}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- uses: ./.github/actions/sanitize/restore
id: restore
with:
@@ -131,7 +131,7 @@ jobs:
env:
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- uses: ./.github/actions/sanitize/restore
id: restore
with:
@@ -165,7 +165,7 @@ jobs:
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
np: ${{inputs.par && '_np=2' || ''}}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- uses: ./.github/actions/sanitize/restore
id: restore
with:
+14
View File
@@ -313,6 +313,8 @@ miniapps/nurbs/nurbs_ex1
miniapps/nurbs/nurbs_ex1p
miniapps/nurbs/nurbs_ex3
miniapps/nurbs/nurbs_ex5
miniapps/nurbs/nurbs_ex10
miniapps/nurbs/nurbs_ex10p
miniapps/nurbs/nurbs_ex11p
miniapps/nurbs/nurbs_ex24
miniapps/nurbs/nurbs_solenoidal
@@ -338,7 +340,14 @@ miniapps/nurbs/nurbs_naca_cmesh
miniapps/nurbs/naca-cmesh.mesh
miniapps/nurbs/glvis_naca-cmesh.mesh
miniapps/nurbs/Naca_cmesh
miniapps/nurbs/nurbs_mesh_info
miniapps/nurbs/k*_*.dat
miniapps/nurbs/*-Surface.mesh
miniapps/nurbs/*.mesh
miniapps/nurbs/*.sol
miniapps/nurbs/deformed.*
miniapps/nurbs/elastic_energy.*
miniapps/nurbs/velocity.*
miniapps/performance/ex1
miniapps/performance/ex1p
@@ -360,6 +369,7 @@ miniapps/shifted/lsf_integral
miniapps/tools/display-basis
miniapps/tools/load-dc
miniapps/tools/convert-dc
miniapps/tools/compare-dc
miniapps/tools/gridfunction-bounds
miniapps/tools/lor-transfer
miniapps/tools/plor-transfer
@@ -433,6 +443,10 @@ miniapps/diag-smoothers/mg-abs-l1-jacobi
miniapps/contact/contact
miniapps/contact/ParaView
miniapps/plasma/pic/electrostatic-*
!miniapps/plasma/pic/electrostatic-*.cpp
miniapps/plasma/pic/*.csv
# Unit test binary and outputs
tests/unit/output_meshes
tests/unit/unit_tests
+52
View File
@@ -8,9 +8,44 @@
https://mfem.org
Version 4.10 (development)
==========================
Discretization improvements
---------------------------
- Replaced legacy simplex quadrature rules with symmetric positive-weight
rules for triangles (orders 0-25) and tetrahedra (orders 0-20). These
rules guarantee all-positive weights and interior quadrature points,
improving numerical stability. Higher orders fall back to Grundmann-Moller.
Triangle rules: Witherden & Vincent, Comput. Math. Appl. 69(10):1232-1241,
2015.
Tet rules (d=1-13): Witherden & Vincent (ibid).
Tet rules (d=14-20): Chuluunbaatar et al., Comput. Math. Appl. 124:89-97,
2022.
Version 4.9.1 (development)
===========================
Discretization improvements
---------------------------
- Improved the gridfunction projection routines. Projections work for Scalar,
Vector and VectorFE, also NURBS versions. Optionally different types of
projections can be selected, default behaviour has not changed.
- Added methods to estimate function extremum using piecewise linear bounds +
recursive subdivision.
Meshing improvements
--------------------
- Improved support for 1D NURBS meshes with variable order, including using
the patches construct for 1D NURBS meshes.
New and updated examples and miniapps
-------------------------------------
- Electromagnetics/lorentz miniapp has been updated to leverage the ParticleSet
capability.
Version 4.9, released on Dec 11, 2025
=====================================
@@ -95,6 +130,23 @@ Linear and nonlinear solvers
Filtering (AMGF), providing robust preconditioning for linear systems arising
in constrained optimization problems such as frictionless contact.
Added 'GetResiduals' and 'GetFinalAbsResidualNorm' to 'HyprePCG',
'HypreGMRES', and 'HypreFGMRES' to get 'r' and '|r|_p'. Note that the latter
computes '|r|_p' from 'r' instead of returning a cached value like the
relative 'GetFinalResidualNorm'. These require Hypre >= 2.15.0.
Changed the default solver parameters for 'HyprePCG' to 'tol=1e-6' and
'max_iter=1000'. This matches the default parameters in Hypre 3.0.
Added various helper functions for querying/modifying Hypre solvers:
'HypreSmoother::GetType', 'HypreSmoother::GetSOROptions',
'HypreSmoother::GetPolyOptions', 'HypreSmoother::GetWindowParameters',
'HypreSmoother::IsOperatorSymmetric', 'HyprePCG::GetTol',
'HyprePCG::GetAbsTol', 'HyprePCG::GetMaxIter', 'HyprePCG::SetUseTwoNorm',
'HypreGMRES::GetTol', 'HypreGMRES::GetAbsTol', 'HypreGMRES::GetMaxIter',
'HypreGMRES::GetKDim', 'HypreFGMRES::GetTol', 'HypreFGMRES::GetMaxIter',
'HypreFGMRES::GetKDim', and 'HypreBoomerAMG::GetMaxIter'.
GPU computing
-------------
- Added the 'gpu', 'raja-gpu', and 'ceed-gpu' backend aliases/shortcuts which
+5 -1
View File
@@ -652,6 +652,8 @@ foreach(TPL IN LISTS MFEM_TPLS)
endif()
endforeach(TPL)
# reverse to remove the first instance of entries in TPL_LIBRARIES
# so later duplicates are kept (for dependency ordering)
list(REVERSE TPL_LIBRARIES)
list(REMOVE_DUPLICATES TPL_LIBRARIES)
list(REVERSE TPL_LIBRARIES)
@@ -1015,5 +1017,7 @@ install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/data
# Create 'config.mk' from 'config.mk.in' for the build and install locations and
# define install rules for 'config.mk' and 'test.mk'
#-------------------------------------------------------------------------------
if (MFEM_USE_CUDA OR MFEM_USE_HIP)
option(MFEM_EXPORT_GPU_CONFIG "Export config.mk for GPU-enabled downstream packages" ON)
endif()
mfem_export_mk_files()
+4
View File
@@ -109,6 +109,10 @@ if (MFEM_USE_RAJA)
find_dependency(RAJA)
endif()
if (MFEM_USE_UMPIRE)
find_dependency(umpire)
endif()
if (NOT TARGET mfem)
include(${CMAKE_CURRENT_LIST_DIR}/MFEMTargets.cmake)
endif (NOT TARGET mfem)
+3 -3
View File
@@ -14,12 +14,12 @@
# - UMPIRE_LIBRARIES
# - UMPIRE_INCLUDE_DIRS
if (NOT umpire_DIR AND UMPIRE_DIR)
set(umpire_DIR ${UMPIRE_DIR}/lib/cmake/umpire)
if (NOT umpire_ROOT AND UMPIRE_DIR)
set(umpire_ROOT ${UMPIRE_DIR})
endif()
message(STATUS "Looking for UMPIRE ...")
message(STATUS " in UMPIRE_DIR = ${UMPIRE_DIR}")
message(STATUS " umpire_DIR = ${umpire_DIR}")
message(STATUS " umpire_ROOT = ${umpire_ROOT}")
find_package(umpire CONFIG)
set(UMPIRE_FOUND ${umpire_FOUND})
set(UMPIRE_LIBRARIES "umpire")
+89 -17
View File
@@ -701,7 +701,6 @@ endfunction(mfem_find_library)
# Extract compile and link options needed by the given target.
#
function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
if (NOT TARGET ${Target})
return()
endif()
@@ -799,7 +798,12 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
# message(STATUS "Lib = ${Lib}")
# Filter-out generator expressions
if (NOT ("${Lib}" MATCHES "^\\$"))
list(APPEND LinkOpts "${Lib}")
if(NOT ("${Lib}" STREQUAL "dl"))
list(APPEND LinkOpts "${Lib}")
else()
# for some reason libdl doesn't include the "-l"
list(APPEND LinkOpts "-ldl")
endif()
endif()
else()
mfem_get_target_options(${Lib} COpts LOpts)
@@ -888,9 +892,18 @@ function(mfem_export_mk_files)
set(${var} NO)
endif()
endforeach()
# TODO: Add support for MFEM_USE_CUDA=YES
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
set(MFEM_HOST_CXX ${MFEM_CXX})
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
set(MFEM_CXX ${CMAKE_CUDA_COMPILER})
if(MFEM_CUDA_COMPILER_IS_NVCC)
set(MFEM_HOST_CXX ${CMAKE_CUDA_HOST_COMPILER})
else()
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
endif()
else()
# mfem doesn't use enable_language(HIP)
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
endif()
set(MFEM_CPPFLAGS "")
get_target_property(cxx_std mfem CXX_STANDARD)
# For now, we ignore the setting of the CXX_EXTENSIONS property. If this
@@ -900,6 +913,50 @@ function(mfem_export_mk_files)
string(STRIP
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
MFEM_CXXFLAGS)
if(MFEM_EXPORT_GPU_CONFIG)
if (MFEM_USE_CUDA)
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} ${CMAKE_CUDA_FLAGS}")
if (MFEM_CUDA_COMPILER_IS_NVCC)
set(MFEM_CXXFLAGS "-x=cu ${MFEM_CXXFLAGS} -ccbin ${CMAKE_CXX_COMPILER} --forward-unknown-to-host-compiler")
# The following intentionally hides CUDA deprecation warnings
foreach(ENTRY IN LISTS CUDAToolkit_INCLUDE_DIRS)
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -isystem ${ENTRY}")
endforeach()
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
# architecture flags not part of CMAKE_CUDA_FLAGS
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -arch=${CMAKE_CUDA_ARCHITECTURES}")
else()
foreach (ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
set(MFEM_CXXFLAGS
"${MFEM_CXXFLAGS} -gencode arch=compute_${ENTRY},code=sm_${ENTRY}")
endforeach()
endif()
endif()
else()
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xcuda --cuda-path=${CUDAToolkit_LIBRARY_ROOT}")
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
# architecture flags not part of CMAKE_CUDA_FLAGS
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
# TODO: not supported
else()
foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
set(MFEM_CXXFLAGS "-cuda-gpu-arch=sm_${ENTRY} ${MFEM_CXXFLAGS}")
endforeach()
endif()
endif()
endif()
elseif (MFEM_USE_HIP)
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xhip")
foreach(ENTRY IN LISTS CMAKE_HIP_ARCHITECTURES)
set(MFEM_CXXFLAGS "--offload-arch=${ENTRY} ${MFEM_CXXFLAGS}")
endforeach()
endif()
endif()
set(MFEM_TPLFLAGS "")
foreach(dir ${TPL_INCLUDE_DIRS})
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
@@ -930,6 +987,9 @@ function(mfem_export_mk_files)
set(MFEM_SHARED NO)
set(MFEM_STATIC YES)
endif()
if (MFEM_USE_CUDA)
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} -lcudart")
endif()
set(MFEM_BUILD_TAG "${CMAKE_SYSTEM}")
set(MFEM_PREFIX "${CMAKE_INSTALL_PREFIX}")
# For the next 4 variables, these are the values for the build-tree version of
@@ -938,8 +998,15 @@ function(mfem_export_mk_files)
set(MFEM_LIB_DIR "${PROJECT_BINARY_DIR}")
set(MFEM_TEST_MK "${PROJECT_SOURCE_DIR}/config/test.mk")
set(MFEM_CONFIG_EXTRA "MFEM_BUILD_DIR ?= ${PROJECT_BINARY_DIR}")
# TODO: CUDA/HIP support:
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
if (MFEM_CUDA_COMPILER_IS_NVCC)
set(MFEM_XLINKER "-Xlinker=")
else()
set(MFEM_XLINKER "${CMAKE_CUDA_LINKER_WRAPPER_FLAG}")
endif()
else()
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
endif()
set(MFEM_MPIEXEC ${MPIEXEC})
if (NOT MFEM_MPIEXEC)
set(MFEM_MPIEXEC "mpirun")
@@ -987,16 +1054,21 @@ function(mfem_export_mk_files)
# handle interfaces (e.g., SCOREC::apf)
if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*" OR "${lib}" MATCHES "ParMoonolith::.*")
elseif (TARGET "${lib}")
mfem_get_target_options(${lib} CompileOpts LinkOpts)
mfem_get_target_options(${lib} CompileOpts2 LinkOpts2)
# remove generator expressions
string(GENEX_STRIP "${CompileOpts2}" CompileOpts)
string(GENEX_STRIP "${LinkOpts2}" LinkOpts)
# Removing duplicates may lead to issues:
# list(REMOVE_DUPLICATES CompileOpts)
# list(REMOVE_DUPLICATES LinkOpts)
string(REPLACE ";" " " COpts "${CompileOpts}")
string(REPLACE ";" " " LOpts "${LinkOpts}")
# message(STATUS "${lib}[COpts]: '${COpts}'")
# message(STATUS "${lib}[LOpts]: '${LOpts}'")
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpts}")
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpts}")
# message(WARNING "${lib}[LinkOpts]: ${LinkOpts}")
# message(WARNING "${lib}[CompileOpts]: ${CompileOpts}")
foreach(LOpt IN LISTS LinkOpts)
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpt}")
endforeach()
foreach(COpt IN LISTS CompileOpts)
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpt}")
endforeach()
# message(FATAL_ERROR "***** interface lib found ... exiting *****")
# handle static and shared libs
elseif ("${suffix}" STREQUAL "${CMAKE_SHARED_LIBRARY_SUFFIX}")
@@ -1004,7 +1076,7 @@ function(mfem_export_mk_files)
get_filename_component(fullLibName ${lib} NAME_WE)
string(REGEX REPLACE "^lib" "" libname ${fullLibName})
set(MFEM_EXT_LIBS
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
else()
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${lib}")
endif()
@@ -1013,7 +1085,7 @@ function(mfem_export_mk_files)
# Create the build-tree version of 'config.mk'
configure_file(
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
"${PROJECT_BINARY_DIR}/config/config.mk")
"${PROJECT_BINARY_DIR}/config/config.mk" @ONLY)
# Copy 'test.mk' from the source-tree to the build-tree
configure_file(
"${PROJECT_SOURCE_DIR}/config/test.mk"
@@ -1031,7 +1103,7 @@ function(mfem_export_mk_files)
# Create the install-tree version of 'config.mk'
configure_file(
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
"${PROJECT_BINARY_DIR}/config/config-install.mk")
"${PROJECT_BINARY_DIR}/config/config-install.mk" @ONLY)
# Install rules for 'config.mk' and 'test.mk'
install(FILES ${PROJECT_SOURCE_DIR}/config/test.mk
+3
View File
@@ -97,6 +97,9 @@
// Enable MFEM functionality based on the SuiteSparse library.
// #define MFEM_USE_SUITESPARSE
// Enable MFEM functionality based on the ARPACK library.
// #define MFEM_USE_ARPACK
// Enable MFEM functionality based on the SuperLU_DIST library.
// #define MFEM_USE_SUPERLU
// #define MFEM_USE_SUPERLU5
+1
View File
@@ -32,6 +32,7 @@ MFEM_USE_MEMALLOC = @MFEM_USE_MEMALLOC@
MFEM_TIMER_TYPE = @MFEM_TIMER_TYPE@
MFEM_USE_SUNDIALS = @MFEM_USE_SUNDIALS@
MFEM_USE_SUITESPARSE = @MFEM_USE_SUITESPARSE@
MFEM_USE_ARPACK = @MFEM_USE_ARPACK@
MFEM_USE_SUPERLU = @MFEM_USE_SUPERLU@
MFEM_USE_SUPERLU5 = @MFEM_USE_SUPERLU5@
MFEM_USE_MUMPS = @MFEM_USE_MUMPS@
+10
View File
@@ -18,6 +18,7 @@
# Some choices below are based on the OS type:
NOTMAC := $(subst Darwin,,$(shell uname -s))
ASTYLE_BIN = astyle
ETAGS_BIN = $(shell command -v etags 2> /dev/null)
EGREP_BIN = $(shell command -v egrep 2> /dev/null)
@@ -177,6 +178,7 @@ MFEM_USE_ALGOIM = NO
MFEM_USE_UMPIRE = NO
MFEM_USE_SIMD = NO
MFEM_USE_ADIOS2 = NO
MFEM_USE_ARPACK = NO
MFEM_USE_MKL_CPARDISO = NO
MFEM_USE_MKL_PARDISO = NO
MFEM_USE_MOONOLITH = NO
@@ -426,6 +428,14 @@ NETCDF_LIB = $(XLINKER)-rpath,$(NETCDF_DIR)/lib -L$(NETCDF_DIR)/lib\
$(XLINKER)-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib\
-lnetcdf -lhdf5_hl -lhdf5 $(ZLIB_LIB)
# ARPACK library configuration
ARPACK_DIR = @MFEM_DIR@/../ARPACK
ifeq ($(MFEM_USE_MPI),YES)
ARPACK_LIB = -L$(ARPACK_DIR) -lparpack -larpack
else
ARPACK_LIB = -L$(ARPACK_DIR) -larpack
endif
# PETSc library configuration (version greater or equal to 3.8 or the dev branch)
PETSC_ARCH := arch-linux2-c-debug
PETSC_DIR := $(MFEM_DIR)/../petsc/$(PETSC_ARCH)
@@ -0,0 +1,86 @@
MFEM NURBS mesh v1.0
dimension
1
# Four segments with different NURBS orders, described via patches.
elements
4
1 1 0 1
2 1 2 3
3 1 4 5
4 1 6 7
boundary
0
edges
4
0 0 1
1 2 3
2 4 5
3 6 7
vertices
8
patches
# Patch 0: linear (order 1, 3 spans)
knotvectors
1
1 4 0 0 .4 .6 1 1
dimension
2
controlpoints
0.0 0.0 1.0
0.6 0.4 1.0
0.4 0.6 1.0
1.0 1.0 1.0
# Patch 1: quadratic (order 2, 2 spans)
knotvectors
1
2 4 0 0 0 .5 1 1 1
dimension
2
controlpoints
1.0 0.0 1.0
1.9 0.0 1.21
2.0 0.9 1.22
2.0 1.0 1.0
# Patch 2: cubic (order 3, 3 spans)
knotvectors
1
3 6 0 0 0 0 .33 .66 1 1 1 1
dimension
2
controlpoints
2.0 0.0 1.0
2.1 0.2 1.31
3.5 0.4 1.32
2.5 0.6 1.33
2.9 1.0 1.34
3.0 1.0 1.0
# Patch 3: quartic (order 4, 1 span)
knotvectors
1
4 5 0 0 0 0 0 1 1 1 1 1
dimension
2
controlpoints
3.0 0.0 1.0
3.45 0.5 1.41
3.50 1.0 1.42
3.75 0.8 1.43
4.0 0.0 1.0
+79
View File
@@ -0,0 +1,79 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
# Three segments with different NURBS orders, described via patches.
elements
3
1 1 0 1
2 1 2 3
3 1 4 5
boundary
6
1 0 0
1 0 1
1 0 2
1 0 3
1 0 4
1 0 5
edges
3
0 0 1
1 2 3
2 4 5
vertices
6
patches
# Patch 0: linear (order 1, 2 control points)
knotvectors
1
1 2 0 0 1 1
dimension
2
controlpoints
0.0 0.0 1.0
1.0 1.0 1.0
# Patch 1: quadratic (order 2, 3 control points)
knotvectors
1
2 3 0 0 0 1 1 1
dimension
2
controlpoints
1.0 0.0 1.0
1.02 1.02 1.2
2.0 1.0 1.0
# Patch 2: cubic (order 3, 4 control points)
knotvectors
1
3 4 0 0 0 0 1 1 1 1
dimension
2
controlpoints
2.0 0.0 1.0
2.03 0.83 1.31
2.33 1.03 1.32
3.0 1.0 1.0
+72
View File
@@ -0,0 +1,72 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
elements
3
1 1 0 1
2 1 2 3
3 1 4 5
boundary
6
1 0 0
1 0 1
1 0 2
1 0 3
1 0 4
1 0 5
edges
3
0 0 1
1 2 3
2 4 5
vertices
6
# Edge 0: linear (order 1, 2 control points)
# Edge 1: quadratic (order 2, 3 control points)
# Edge 2: cubic (order 3, 4 control points)
knotvectors
3
1 2 0 0 1 1
2 3 0 0 0 1 1 1
3 4 0 0 0 0 1 1 1 1
# One weight per control point, in the same order as the control points; (2 + 3 + 4) = 9 weights total
weights
1
1
1
1
1
1
1.2
1.31
1.32
FiniteElementSpace
FiniteElementCollection: NURBS
VDim: 2
Ordering: 1
0.0 0.0
1.0 1.0
1.0 0.0
2.0 1.0
2.0 0.0
3.0 1.0
1.02 1.02
2.03 0.83
2.33 1.03
+79
View File
@@ -0,0 +1,79 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
# Three segments with different NURBS orders, described via patches.
elements
3
1 1 0 1
2 1 2 3
3 1 4 5
boundary
6
1 0 0
1 0 1
1 0 2
1 0 3
1 0 4
1 0 5
edges
3
0 0 1
1 2 3
2 4 5
vertices
6
patches
# Patch 0: linear (order 1, 2 control points)
knotvectors
1
1 2 0 0 1 1
dimension
3
controlpoints
0.0 0.0 0.01 1.0
1.0 1.0 1.01 1.0
# Patch 1: quadratic (order 2, 3 control points)
knotvectors
1
2 3 0 0 0 1 1 1
dimension
3
controlpoints
1.0 0.0 0.02 1.0
1.02 1.02 0.52 1.2
2.0 1.0 1.02 1.0
# Patch 2: cubic (order 3, 4 control points)
knotvectors
1
3 4 0 0 0 0 1 1 1 1
dimension
3
controlpoints
2.0 0.0 0.03 1.0
2.03 0.83 0.33 1.31
2.33 1.03 0.63 1.32
3.0 1.0 1.03 1.0
+72
View File
@@ -0,0 +1,72 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
elements
3
1 1 0 1
2 1 2 3
3 1 4 5
boundary
6
1 0 0
1 0 1
1 0 2
1 0 3
1 0 4
1 0 5
edges
3
0 0 1
1 2 3
2 4 5
vertices
6
# Edge 0: linear (order 1, 2 control points)
# Edge 1: quadratic (order 2, 3 control points)
# Edge 2: cubic (order 3, 4 control points)
knotvectors
3
1 2 0 0 1 1
2 3 0 0 0 1 1 1
3 4 0 0 0 0 1 1 1 1
# One weight per control point, in the same order as the control points; (2 + 3 + 4) = 9 weights total
weights
1
1
1
1
1
1
1.2
1.31
1.32
FiniteElementSpace
FiniteElementCollection: NURBS
VDim: 3
Ordering: 1
0.0 0.0 0.01
1.0 1.0 1.01
1.0 0.0 0.02
2.0 1.0 1.02
2.0 0.0 0.03
3.0 1.0 1.03
1.02 1.02 0.52
2.03 0.83 0.33
2.33 1.03 0.63
+3
View File
@@ -190,6 +190,8 @@ namespace mfem {
* <a class="el" href="nurbs__ex1p_8cpp_source.html">1p</a>,
* <a class="el" href="nurbs__ex3_8cpp_source.html">3</a>,
* <a class="el" href="nurbs__ex5_8cpp_source.html">5</a>,
* <a class="el" href="nurbs__ex10_8cpp_source.html">10</a>,
* <a class="el" href="nurbs__ex10p_8cpp_source.html">10p</a>,
* <a class="el" href="nurbs__ex11p_8cpp_source.html">11p</a>, and
* <a class="el" href="nurbs__ex24_8cpp_source.html">24</a>,
* demonstrating howto perform NURBS-based Isogeometric Analysis.
@@ -198,6 +200,7 @@ namespace mfem {
* - <a class="el" href="nurbs__curveint_8cpp_source.html">NURBS Interpolation</a>: NURBS interpolation of given geometry
* - <a class="el" href="nurbs__naca__cmesh_8cpp_source.html">NURBS NACA Mesher</a>: generate NURBS based mesh around a NACA foil
* - <a class="el" href="nurbs__printfunc_8cpp_source.html">NURBS Printer</a>: print the NURBS-basis
* - <a class="el" href="nurbs__mesh_info_8cpp_source.html">NURBS Mesh info</a>: print the info of a NURBS mesh
*
* <H3>Miniapps</H3>
* - <a class="el" href="volta_8cpp_source.html">Volta</a>: simple electrostatics simulation code
+7
View File
@@ -49,6 +49,13 @@ list(APPEND ALL_EXE_SRCS
ex41.cpp
)
if (MFEM_USE_ARPACK)
list(APPEND ALL_EXE_SRCS
ex11.pp
ex13.pp
)
endif()
if (MFEM_USE_MPI)
list(APPEND ALL_EXE_SRCS
ex0p.cpp
+298
View File
@@ -0,0 +1,298 @@
// MFEM Example 11 - Serial Version
//
// Compile with: make ex11
//
// Sample runs: ex11 -m ../data/square-disc.mesh
// ex11 -m ../data/star.mesh
// ex11 -m ../data/star-mixed.mesh
// ex11 -m ../data/periodic-annulus-sector.msh
// ex11 -m ../data/square-disc-p2.vtk -o 2
// ex11 -m ../data/square-disc-p3.mesh -o 3
// ex11 -m ../data/square-disc-nurbs.mesh -o -1
// ex11 -m ../data/disc-nurbs.mesh -o -1 -n 20
// ex11 -m ../data/star-surf.mesh
// ex11 -m ../data/square-disc-surf.mesh
// ex11 -m ../data/inline-segment.mesh
// ex11 -m ../data/inline-quad.mesh
// ex11 -m ../data/inline-tri.mesh
// ex11 -m ../data/amr-quad.mesh
// ex11 -m ../data/amr-hex.mesh
// ex11 -m ../data/mobius-strip.mesh -n 8
//
// Description: This example code demonstrates the use of MFEM to solve the
// eigenvalue problem -Delta u = lambda u with homogeneous
// Dirichlet boundary conditions.
//
// We compute a number of the lowest eigenmodes by discretizing
// the Laplacian and Mass operators using a FE space of the
// specified order, or an isoparametric/isogeometric space if
// order < 1 (quadratic for quadratic curvilinear mesh, NURBS for
// NURBS mesh, etc.)
//
// The example highlights the use of the ARPACK eigenvalue solver
// (regular inverse mode). Reusing a single GLVis visualization
// window for multiple eigenfunctions is also illustrated.
//
// We recommend viewing Example 1 before viewing this example.
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
#ifdef MFEM_USE_ARPACK
int main(int argc, char *argv[])
{
// 1. Parse command-line options.
const char *mesh_file = "../data/star.mesh";
int ser_ref_levels = 3;
int order = 1;
int nev = 5;
double dbc_eig = 1e3;
bool visualization = 1;
bool arp_solver = true;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&ser_ref_levels, "-rs", "--refine-serial",
"Number of times to refine the mesh uniformly in serial.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree) or -1 for"
" isoparametric space.");
args.AddOption(&nev, "-n", "--num-eigs",
"Number of desired eigenmodes.");
args.AddOption(&dbc_eig, "-d", "--dbc-eig",
"Eigenvalues associated with Dirichlet BC "
"(should be larger than the maximum desired eigenvalue).");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
// 2. Read the (serial) mesh from the given mesh file on all processors. We
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
// and volume meshes with the same code.
Mesh *mesh;
ifstream imesh(mesh_file);
if (!imesh)
{
cerr << "\nCan not open mesh file: " << mesh_file << '\n' << endl;
return 2;
}
mesh = new Mesh(imesh, 1, 1);
imesh.close();
int dim = mesh->Dimension();
// 3. Refine the serial mesh on all processors to increase the resolution. In
// this example we do 'ref_levels' of uniform refinement (2 by default, or
// specified on the command line with -rs).
for (int lev = 0; lev < ser_ref_levels; lev++)
{
mesh->UniformRefinement();
}
// 4. Define a finite element space on the mesh. Here we
// use continuous Lagrange finite elements of the specified order. If
// order < 1, we instead use an isoparametric/isogeometric space.
FiniteElementCollection *fec;
if (order > 0)
{
fec = new H1_FECollection(order, dim);
}
else if (mesh->GetNodes())
{
fec = mesh->GetNodes()->OwnFEC();
}
else
{
fec = new H1_FECollection(order = 1, dim);
}
FiniteElementSpace *fespace = new FiniteElementSpace(mesh, fec);
int size = fespace->GetVSize();
cout << "Number of unknowns: " << size << endl;
// 5. Set up the parallel bilinear forms a(.,.) and m(.,.) on the finite
// element space. The first corresponds to the Laplacian operator -Delta,
// while the second is a simple mass matrix needed on the right hand side
// of the generalized eigenvalue problem below. The boundary conditions
// are implemented by elimination with special values on the diagonal to
// shift the Dirichlet eigenvalues out of the computational range. After
// serial and parallel assembly we extract the corresponding parallel
// matrices A and M.
ConstantCoefficient one(1.0);
Array<int> ess_bdr;
if (mesh->bdr_attributes.Size())
{
ess_bdr.SetSize(mesh->bdr_attributes.Max());
ess_bdr = 1;
}
BilinearForm *a = new BilinearForm(fespace);
a->AddDomainIntegrator(new DiffusionIntegrator(one));
if (mesh->bdr_attributes.Size() == 0)
{
// Add a mass term if the mesh has no boundary, e.g. periodic mesh or
// closed surface.
a->AddDomainIntegrator(new MassIntegrator(one));
}
a->Assemble();
if (mesh->bdr_attributes.Size() != 0)
{
a->EliminateEssentialBCDiag(ess_bdr, dbc_eig);
}
a->Finalize();
BilinearForm *m = new BilinearForm(fespace);
m->AddDomainIntegrator(new MassIntegrator(one));
m->Assemble();
if (mesh->bdr_attributes.Size() != 0)
{
// shift the eigenvalue corresponding to eliminated dofs to a large value
m->EliminateEssentialBCDiag(ess_bdr, 1.0);
}
m->Finalize();
Solver * solver = NULL;
#ifndef MFEM_USE_SUITESPARSE
// 6. Define a simple symmetric Gauss-Seidel preconditioner and use it to
// solve the system A X = B with PCG.
cout << "Building CGSolver" << endl;
GSSmoother M(m->SpMat());
CGSolver * cg_solver = new CGSolver;
cg_solver->SetPreconditioner(M);
cg_solver->SetRelTol(1.0e-12);
solver = cg_solver;
#else
// 7. If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
cout << "Building UMFPackSolver" << endl;
UMFPackSolver * umf_solver = new UMFPackSolver;
umf_solver->Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
solver = umf_solver;
#endif
solver->SetOperator(m->SpMat());
// 7. Define and configure the ARPACK eigensolver
SymGenEigensolver * eig_solver = NULL;
if (arp_solver)
{
// ArPackSymGen * arpack = new ArPackSymGen();
ArPackSAUPD * arpack = new ArPackSAUPD();
arpack->SetMode(2);
arpack->SetNumModes(nev);
arpack->SetMaxIter(400);
arpack->SetTol(1e-8);
arpack->SetPrintLevel(2);
arpack->SetSolver(*solver);
eig_solver = arpack;
}
eig_solver->SetOperators(*a, *m);
// 8. Compute the eigenmodes and extract the array of eigenvalues. Define a
// parallel grid function to represent each of the eigenmodes returned by
// the solver.
Array<double> eigenvalues;
eig_solver->Solve();
eig_solver->GetEigenvalues(eigenvalues);
cout << endl;
std::ios::fmtflags old_fmt = cout.flags();
cout.setf(std::ios::scientific);
std::streamsize old_prec = cout.precision(14);
for (int i=0; i<nev; i++)
{
cout << "Eigenvalue lambda " << eigenvalues[i] << endl;
}
cout.precision(old_prec);
cout.flags(old_fmt);
cout << endl;
GridFunction x(fespace);
// 9. Save the refined mesh and the modes in parallel. This output can be
// viewed later using GLVis: "glvis -np <np> -m mesh -g mode".
{
ostringstream mesh_name, mode_name;
mesh_name << "ex11.mesh";
ofstream mesh_ofs(mesh_name.str().c_str());
mesh_ofs.precision(8);
mesh->Print(mesh_ofs);
for (int i=0; i<nev; i++)
{
// convert eigenvector from Vector to GridFunction
x = eig_solver->GetEigenvector(i);
mode_name << "mode_" << setfill('0') << setw(2) << i;
ofstream mode_ofs(mode_name.str().c_str());
mode_ofs.precision(8);
x.Save(mode_ofs);
mode_name.str("");
}
}
// 10. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream mode_sock(vishost, visport);
mode_sock.precision(8);
for (int i=0; i<nev; i++)
{
cout << "Eigenmode " << i+1 << '/' << nev
<< ", Lambda = " << eigenvalues[i] << endl;
// convert eigenvector from Vector to GridFunction
x = eig_solver->GetEigenvector(i);
mode_sock << "solution\n" << *mesh << x << flush
<< "window_title 'Eigenmode " << i+1 << '/' << nev
<< ", Lambda = " << eigenvalues[i] << "'" << endl;
char c;
cout << "press (q)uit or (c)ontinue --> " << flush;
cin >> c;
if (c != 'c')
{
break;
}
}
mode_sock.close();
}
// 11. Free the used memory.
delete eig_solver;
delete solver;
delete m;
delete a;
delete fespace;
if (order > 0)
{
delete fec;
}
delete mesh;
return 0;
}
#endif // MFEM_USE_ARPACK
+104 -43
View File
@@ -72,6 +72,8 @@ int main(int argc, char *argv[])
int seed = 75;
bool slu_solver = false;
bool sp_solver = false;
bool lob_solver = true;
bool arp_solver = false;
bool cpardiso_solver = false;
bool visualization = 1;
@@ -97,6 +99,10 @@ int main(int argc, char *argv[])
args.AddOption(&sp_solver, "-sp", "--strumpack", "-no-sp",
"--no-strumpack", "Use the STRUMPACK Solver.");
#endif
#ifdef MFEM_USE_ARPACK
args.AddOption(&arp_solver, "-arp", "--arpack", "-no-arp",
"--no-arpack", "Use the Parallel ARPACK Solver.");
#endif
#ifdef MFEM_USE_MKL_CPARDISO
args.AddOption(&cpardiso_solver, "-cpardiso", "--cpardiso", "-no-cpardiso",
"--no-cpardiso", "Use the MKL CPardiso Solver.");
@@ -113,6 +119,11 @@ int main(int argc, char *argv[])
<< " Defaulting to SuperLU." << endl;
sp_solver = false;
}
if (arp_solver)
{
lob_solver = false;
}
// The command line options are also passed to the STRUMPACK
// solver. So do not exit if some options are not recognized.
if (!sp_solver)
@@ -243,70 +254,119 @@ int main(int argc, char *argv[])
// 8. Define and configure the LOBPCG eigensolver and the BoomerAMG
// preconditioner for A to be used within the solver. Set the matrices
// which define the generalized eigenproblem A x = lambda M x.
Solver * solver = NULL;
Solver * precond = NULL;
if (!slu_solver && !sp_solver && !cpardiso_solver)
{
HypreBoomerAMG * amg = new HypreBoomerAMG(*A);
amg->SetPrintLevel(0);
precond = amg;
}
else
{
#ifdef MFEM_USE_SUPERLU
if (slu_solver)
if (arp_solver)
{
HyprePCG * pcg = new HyprePCG(*A);
pcg->SetTol(1e-12);
pcg->SetPreconditioner(*amg);
solver = pcg;
}
}
#ifdef MFEM_USE_SUPERLU
else if (slu_solver)
{
SuperLUSolver * superlu = new SuperLUSolver(MPI_COMM_WORLD);
superlu->SetPrintStatistics(false);
superlu->SetSymmetricPattern(true);
superlu->SetColumnPermutation(superlu::PARMETIS);
superlu->SetOperator(*Arow);
if (arp_solver)
{
solver = superlu;
}
else
{
SuperLUSolver * superlu = new SuperLUSolver(MPI_COMM_WORLD);
superlu->SetPrintStatistics(false);
superlu->SetSymmetricPattern(true);
superlu->SetColumnPermutation(superlu::PARMETIS);
superlu->SetOperator(*Arow);
precond = superlu;
}
}
#endif
#ifdef MFEM_USE_STRUMPACK
if (sp_solver)
else if (sp_solver)
{
STRUMPACKSolver * strumpack = new STRUMPACKSolver(argc, argv,
MPI_COMM_WORLD);
strumpack->SetPrintFactorStatistics(true);
strumpack->SetPrintSolveStatistics(false);
strumpack->SetKrylovSolver(strumpack::KrylovSolver::DIRECT);
strumpack->SetReorderingStrategy(strumpack::ReorderingStrategy::METIS);
strumpack->SetMatching(strumpack::MatchingJob::NONE);
strumpack->SetCompression(strumpack::CompressionType::NONE);
strumpack->SetOperator(*Arow);
strumpack->SetFromCommandLine();
if (arp_solver)
{
solver = strumpack;
}
else
{
STRUMPACKSolver * strumpack = new STRUMPACKSolver(MPI_COMM_WORLD, argc, argv);
strumpack->SetPrintFactorStatistics(true);
strumpack->SetPrintSolveStatistics(false);
strumpack->SetKrylovSolver(strumpack::KrylovSolver::DIRECT);
strumpack->SetReorderingStrategy(strumpack::ReorderingStrategy::METIS);
strumpack->SetMatching(strumpack::MatchingJob::NONE);
strumpack->SetCompression(strumpack::CompressionType::NONE);
strumpack->SetOperator(*Arow);
strumpack->SetFromCommandLine();
precond = strumpack;
}
}
#endif
#ifdef MFEM_USE_MKL_CPARDISO
if (cpardiso_solver)
else if (cpardiso_solver)
{
auto cpardiso = new CPardisoSolver(A->GetComm());
cpardiso->SetMatrixType(CPardisoSolver::MatType::REAL_STRUCTURE_SYMMETRIC);
cpardiso->SetPrintLevel(1);
cpardiso->SetOperator(*A);
if (arp_solver)
{
solver = cpardiso;
}
else
{
auto cpardiso = new CPardisoSolver(A->GetComm());
cpardiso->SetMatrixType(CPardisoSolver::MatType::REAL_STRUCTURE_SYMMETRIC);
cpardiso->SetPrintLevel(1);
cpardiso->SetOperator(*A);
precond = cpardiso;
}
#endif
}
#endif
HypreLOBPCG * lobpcg = new HypreLOBPCG(MPI_COMM_WORLD);
lobpcg->SetNumModes(nev);
lobpcg->SetRandomSeed(seed);
lobpcg->SetPreconditioner(*precond);
lobpcg->SetMaxIter(200);
lobpcg->SetTol(1e-8);
lobpcg->SetPrecondUsageMode(1);
lobpcg->SetPrintLevel(1);
lobpcg->SetMassMatrix(*M);
lobpcg->SetOperator(*A);
SymGenEigensolver * eig_solver = NULL;
if (lob_solver)
{
HypreLOBPCG * lobpcg = new HypreLOBPCG(MPI_COMM_WORLD);
lobpcg->SetNumModes(nev);
lobpcg->SetRandomSeed(seed);
lobpcg->SetPreconditioner(*precond);
lobpcg->SetMaxIter(200);
lobpcg->SetTol(1e-8);
lobpcg->SetPrecondUsageMode(1);
lobpcg->SetPrintLevel(1);
eig_solver = lobpcg;
}
#ifdef MFEM_USE_ARPACK
else if (arp_solver)
{
ArPackPSAUPD * arpack = new ArPackPSAUPD(MPI_COMM_WORLD);
arpack->SetNumModes(nev);
arpack->SetMaxIter(400);
arpack->SetTol(1e-8);
arpack->SetMode(3);
arpack->SetPrintLevel(2);
arpack->SetSolver(*solver);
eig_solver = arpack;
}
#endif
eig_solver->SetOperators(*A, *M);
// 9. Compute the eigenmodes and extract the array of eigenvalues. Define a
// parallel grid function to represent each of the eigenmodes returned by
// the solver.
Array<real_t> eigenvalues;
lobpcg->Solve();
lobpcg->GetEigenvalues(eigenvalues);
eig_solver->Solve();
eig_solver->GetEigenvalues(eigenvalues);
ParGridFunction x(fespace);
// 10. Save the refined mesh and the modes in parallel. This output can be
@@ -321,8 +381,8 @@ int main(int argc, char *argv[])
for (int i=0; i<nev; i++)
{
// convert eigenvector from HypreParVector to ParGridFunction
x = lobpcg->GetEigenvector(i);
// convert eigenvector from Vector to ParGridFunction
x.Distribute(eig_solver->GetEigenvector(i));
mode_name << "mode_" << setfill('0') << setw(2) << i << "."
<< setfill('0') << setw(6) << myid;
@@ -350,8 +410,8 @@ int main(int argc, char *argv[])
<< ", Lambda = " << eigenvalues[i] << endl;
}
// convert eigenvector from HypreParVector to ParGridFunction
x = lobpcg->GetEigenvector(i);
// convert eigenvector from Vector to ParGridFunction
x.Distribute(eig_solver->GetEigenvector(i));
mode_sock << "parallel " << num_procs << " " << myid << "\n"
<< "solution\n" << *pmesh << x << flush
@@ -375,7 +435,8 @@ int main(int argc, char *argv[])
}
// 12. Free the used memory.
delete lobpcg;
delete eig_solver;
delete solver;
delete precond;
delete M;
delete A;
+381
View File
@@ -0,0 +1,381 @@
// MFEM Example 11 - Parallel Version
//
// Compile with: make ex11p
//
// Sample runs: mpirun -np 4 ex11p -m ../data/square-disc.mesh
// mpirun -np 4 ex11p -m ../data/star.mesh
// mpirun -np 4 ex11p -m ../data/escher.mesh
// mpirun -np 4 ex11p -m ../data/fichera.mesh
// mpirun -np 4 ex11p -m ../data/square-disc-p2.vtk -o 2
// mpirun -np 4 ex11p -m ../data/square-disc-p3.mesh -o 3
// mpirun -np 4 ex11p -m ../data/square-disc-nurbs.mesh -o -1
// mpirun -np 4 ex11p -m ../data/disc-nurbs.mesh -o -1 -n 20
// mpirun -np 4 ex11p -m ../data/pipe-nurbs.mesh -o -1
// mpirun -np 4 ex11p -m ../data/ball-nurbs.mesh -o 2
// mpirun -np 4 ex11p -m ../data/star-surf.mesh
// mpirun -np 4 ex11p -m ../data/square-disc-surf.mesh
// mpirun -np 4 ex11p -m ../data/inline-segment.mesh
// mpirun -np 4 ex11p -m ../data/amr-quad.mesh
// mpirun -np 4 ex11p -m ../data/amr-hex.mesh
// mpirun -np 4 ex11p -m ../data/mobius-strip.mesh -n 8
// mpirun -np 4 ex11p -m ../data/klein-bottle.mesh -n 10
//
// Description: This example code demonstrates the use of MFEM to solve the
// eigenvalue problem -Delta u = lambda u with homogeneous
// Dirichlet boundary conditions.
//
// We compute a number of the lowest eigenmodes by discretizing
// the Laplacian and Mass operators using a FE space of the
// specified order, or an isoparametric/isogeometric space if
// order < 1 (quadratic for quadratic curvilinear mesh, NURBS for
// NURBS mesh, etc.)
//
// The example highlights the use of the LOBPCG and ARPACK
// eigenvalue solvers together with the BoomerAMG preconditioner
// in HYPRE, as well as optionally the SuperLU parallel direct
// solver. Reusing a single GLVis visualization window for
// multiple eigenfunctions is also illustrated.
//
// We recommend viewing Example 1 before viewing this example.
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
int main(int argc, char *argv[])
{
// 1. Initialize MPI.
int num_procs, myid;
MPI_Init(&argc, &argv);
MPI_Comm_size(MPI_COMM_WORLD, &num_procs);
MPI_Comm_rank(MPI_COMM_WORLD, &myid);
// 2. Parse command-line options.
const char *mesh_file = "../data/star.mesh";
int ser_ref_levels = 2;
int par_ref_levels = 1;
int order = 1;
int nev = 5;
bool slu_solver = false;
bool use_arpack = false;
bool visualization = 1;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&ser_ref_levels, "-rs", "--refine-serial",
"Number of times to refine the mesh uniformly in serial.");
args.AddOption(&par_ref_levels, "-rp", "--refine-parallel",
"Number of times to refine the mesh uniformly in parallel.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree) or -1 for"
" isoparametric space.");
args.AddOption(&nev, "-n", "--num-eigs",
"Number of desired eigenmodes.");
#ifdef MFEM_USE_SUPERLU
args.AddOption(&slu_solver, "-slu", "--superlu", "-no-slu",
"--no-superlu", "Use the SuperLU Solver.");
#endif
#ifdef MFEM_USE_ARPACK
args.AddOption(&use_arpack, "-arpack", "--use-arpack", "-no-arpack",
"--no-arpack",
"Enable or disable the use of ARPACK.");
#endif
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
if (myid == 0)
{
args.PrintUsage(cout);
}
MPI_Finalize();
return 1;
}
if (myid == 0)
{
args.PrintOptions(cout);
}
// 3. Read the (serial) mesh from the given mesh file on all processors. We
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
// and volume meshes with the same code.
Mesh *mesh;
ifstream imesh(mesh_file);
if (!imesh)
{
if (myid == 0)
{
cerr << "\nCan not open mesh file: " << mesh_file << '\n' << endl;
}
MPI_Finalize();
return 2;
}
mesh = new Mesh(imesh, 1, 1);
imesh.close();
int dim = mesh->Dimension();
// 4. Refine the serial mesh on all processors to increase the resolution. In
// this example we do 'ref_levels' of uniform refinement (2 by default, or
// specified on the command line with -rs).
for (int lev = 0; lev < ser_ref_levels; lev++)
{
mesh->UniformRefinement();
}
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution (1 time by
// default, or specified on the command line with -rp). Once the parallel
// mesh is defined, the serial mesh can be deleted.
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
delete mesh;
for (int lev = 0; lev < par_ref_levels; lev++)
{
pmesh->UniformRefinement();
}
// 6. Define a parallel finite element space on the parallel mesh. Here we
// use continuous Lagrange finite elements of the specified order. If
// order < 1, we instead use an isoparametric/isogeometric space.
FiniteElementCollection *fec;
if (order > 0)
{
fec = new H1_FECollection(order, dim);
}
else if (pmesh->GetNodes())
{
fec = pmesh->GetNodes()->OwnFEC();
}
else
{
fec = new H1_FECollection(order = 1, dim);
}
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
HYPRE_Int size = fespace->GlobalTrueVSize();
if (myid == 0)
{
cout << "Number of unknowns: " << size << endl;
}
// 7. Set up the parallel bilinear forms a(.,.) and m(.,.) on the finite
// element space. The first corresponds to the Laplacian operator -Delta,
// while the second is a simple mass matrix needed on the right hand side
// of the generalized eigenvalue problem below. The boundary conditions
// are implemented by elimination with special values on the diagonal to
// shift the Dirichlet eigenvalues out of the computational range. After
// serial and parallel assembly we extract the corresponding parallel
// matrices A and M.
ConstantCoefficient one(1.0);
Array<int> ess_bdr;
if (pmesh->bdr_attributes.Size())
{
ess_bdr.SetSize(pmesh->bdr_attributes.Max());
ess_bdr = 1;
}
ParBilinearForm *a = new ParBilinearForm(fespace);
a->AddDomainIntegrator(new DiffusionIntegrator(one));
if (pmesh->bdr_attributes.Size() == 0)
{
// Add a mass term if the mesh has no boundary, e.g. periodic mesh or
// closed surface.
a->AddDomainIntegrator(new MassIntegrator(one));
}
a->Assemble();
a->EliminateEssentialBCDiag(ess_bdr, 1.0);
a->Finalize();
ParBilinearForm *m = new ParBilinearForm(fespace);
m->AddDomainIntegrator(new MassIntegrator(one));
m->Assemble();
// shift the eigenvalue corresponding to eliminated dofs to a large value
m->EliminateEssentialBCDiag(ess_bdr, numeric_limits<double>::min());
m->Finalize();
HypreParMatrix *A = a->ParallelAssemble();
HypreParMatrix *M = m->ParallelAssemble();
#ifdef MFEM_USE_SUPERLU
Operator * Arow = NULL;
if (slu_solver)
{
Arow = new SuperLURowLocMatrix(*A);
}
#endif
delete a;
delete m;
// 8. Define and configure the LOBPCG eigensolver and the BoomerAMG
// preconditioner for A to be used within the solver. Set the matrices
// which define the generalized eigenproblem A x = lambda M x.
Eigensolver * esolver = NULL;
Solver * solver = NULL;
Solver * precond = NULL;
if (!slu_solver)
{
HypreBoomerAMG * amg = new HypreBoomerAMG(*A);
amg->SetPrintLevel(0);
precond = amg;
#ifdef MFEM_USE_ARPACK
if ( use_arpack )
{
HyprePCG * pcg = new HyprePCG(*A);
pcg->SetTol(1e-12);
pcg->SetMaxIter(200);
pcg->SetPreconditioner(*amg);
pcg->SetPrintLevel(0);
solver = pcg;
}
#endif
}
#ifdef MFEM_USE_SUPERLU
else
{
SuperLUSolver * superlu = new SuperLUSolver(MPI_COMM_WORLD);
superlu->SetPrintStatistics(false);
superlu->SetSymmetricPattern(true);
superlu->SetColumnPermutation(superlu::PARMETIS);
superlu->SetOperator(*Arow);
solver = use_arpack?superlu:NULL;
precond = use_arpack?NULL:superlu;
}
#endif
if ( use_arpack )
{
ParArPackSym * arpack = new ParArPackSym(MPI_COMM_WORLD);
arpack->SetMode(3);
arpack->SetPrintLevel(2);
arpack->SetSolver(*solver);
esolver = arpack;
}
else
{
HypreLOBPCG * lobpcg = new HypreLOBPCG(MPI_COMM_WORLD);
lobpcg->SetPreconditioner(*precond);
lobpcg->SetPrecondUsageMode(1);
lobpcg->SetPrintLevel(1);
esolver = lobpcg;
}
esolver->SetNumModes(nev);
esolver->SetMaxIter(100);
esolver->SetTol(1e-8);
esolver->SetMassMatrix(*M);
esolver->SetOperator(*A);
// 9. Compute the eigenmodes and extract the array of eigenvalues. Define a
// parallel grid function to represent each of the eigenmodes returned by
// the solver.
Array<double> eigenvalues;
esolver->Solve();
esolver->GetEigenvalues(eigenvalues);
if ( myid == 0 && use_arpack )
{
cout << endl;
for (int i=0; i<eigenvalues.Size(); i++)
{
cout << "Eigenvalue lambda " << eigenvalues[i] << endl;
}
cout << endl;
}
ParGridFunction x(fespace);
// 10. Save the refined mesh and the modes in parallel. This output can be
// viewed later using GLVis: "glvis -np <np> -m mesh -g mode".
{
ostringstream mesh_name, mode_name;
mesh_name << "mesh." << setfill('0') << setw(6) << myid;
ofstream mesh_ofs(mesh_name.str().c_str());
mesh_ofs.precision(8);
pmesh->Print(mesh_ofs);
for (int i=0; i<nev; i++)
{
// convert eigenvector from HypreParVector to ParGridFunction
x.Distribute(esolver->GetEigenvector(i));
mode_name << "mode_" << setfill('0') << setw(2) << i << "."
<< setfill('0') << setw(6) << myid;
ofstream mode_ofs(mode_name.str().c_str());
mode_ofs.precision(8);
x.Save(mode_ofs);
mode_name.str("");
}
}
// 11. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream mode_sock(vishost, visport);
mode_sock.precision(8);
for (int i=0; i<nev; i++)
{
if ( myid == 0 )
{
cout << "Eigenmode " << i+1 << '/' << nev
<< ", Lambda = " << eigenvalues[i] << endl;
}
// convert eigenvector from HypreParVector to ParGridFunction
x.Distribute(esolver->GetEigenvector(i));
mode_sock << "parallel " << num_procs << " " << myid << "\n"
<< "solution\n" << *pmesh << x << flush
<< "window_title 'Eigenmode " << i+1 << '/' << nev
<< ", Lambda = " << eigenvalues[i] << "'" << endl;
char c;
if (myid == 0)
{
cout << "press (q)uit or (c)ontinue --> " << flush;
cin >> c;
}
MPI_Bcast(&c, 1, MPI_CHAR, 0, MPI_COMM_WORLD);
if (c != 'c')
{
break;
}
}
mode_sock.close();
}
// 12. Free the used memory.
delete esolver;
delete solver;
delete precond;
delete M;
delete A;
delete fespace;
if (order > 0)
{
delete fec;
}
delete pmesh;
MPI_Finalize();
return 0;
}
+7 -7
View File
@@ -5,9 +5,9 @@
// Sample runs:
// mpirun -np 4 ex12p -m ../data/beam-tri.mesh
// mpirun -np 4 ex12p -m ../data/beam-quad.mesh
// mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 462 -n 10 -o 2 -elast
// mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 464 -n 10 -o 2 -elast
// mpirun -np 4 ex12p -m ../data/beam-hex.mesh -s 3878
// mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 81
// mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 82
// mpirun -np 4 ex12p -m ../data/beam-tri.mesh -s 3877 -o 2 -sys
// mpirun -np 4 ex12p -m ../data/beam-quad.mesh -s 4544 -n 6 -o 3 -elast
// mpirun -np 4 ex12p -m ../data/beam-quad-nurbs.mesh
@@ -276,8 +276,8 @@ int main(int argc, char *argv[])
for (int i=0; i<nev; i++)
{
// convert eigenvector from HypreParVector to ParGridFunction
x = lobpcg->GetEigenvector(i);
// convert eigenvector from Vector to ParGridFunction
x.Distribute(lobpcg->GetEigenvector(i));
mode_name << "mode_" << setfill('0') << setw(2) << i << "."
<< setfill('0') << setw(6) << myid;
@@ -303,7 +303,7 @@ int main(int argc, char *argv[])
pmesh->Print(adios2output);
for (int i=0; i<nev; i++)
{
x = lobpcg->GetEigenvector(i);
x.Distribute(lobpcg->GetEigenvector(i));
// x is a temporary that must be saved immediately
x.Save(adios2output, "mode_" + std::to_string(i));
}
@@ -326,8 +326,8 @@ int main(int argc, char *argv[])
<< ", Lambda = " << eigenvalues[i] << endl;
}
// convert eigenvector from HypreParVector to ParGridFunction
x = lobpcg->GetEigenvector(i);
// convert eigenvector from Vector to ParGridFunction
x.Distribute(lobpcg->GetEigenvector(i));
mode_sock << "parallel " << num_procs << " " << myid << "\n"
<< "solution\n" << *pmesh << x << flush
+282
View File
@@ -0,0 +1,282 @@
// MFEM Example 13
//
// Compile with: make ex3p
//
// Sample runs: ex13 -m ../data/star.mesh -s 5
// ex13 -m ../data/square-disc.mesh -o 2 -n 4 // minres fails to conv.
// ex13 -m ../data/beam-hex.mesh
// ex13 -m ../data/square-disc.mesh -rs 1 -s 26
// ex13 -m ../data/square-disc-nurbs.mesh -rs 3 -s 26
// ex13 -m ../data/amr-quad.mesh -o 2 // minres fails to conv.
// ex13 -m ../data/mobius-strip.mesh -n 8
//
// Description: This example code solves a simple 3D electromagnetic
// eigenmode problem corresponding to the second order
// Maxwell equation curl curl E = lambda E with boundary
// condition E x n = 0. We discretize with Nedelec finite
// elements.
//
// The example demonstrates the use of H(curl) finite element
// spaces with the curl-curl and the (vector finite element) mass
// bilinear form, as well as the use of the ARPACK eigenmode
// solver for symmetric matrices using the shift-invert mode.
//
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
#ifdef MFEM_USE_ARPACK
int main(int argc, char *argv[])
{
// 1. Parse command-line options.
const char *mesh_file = "../data/beam-tet.mesh";
int order = 1;
int nev = 5;
int sr = 2;
double sigma = 11.0;
bool visualization = 1;
bool arp_solver = true;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree).");
args.AddOption(&nev, "-n", "--num-eigs",
"Number of desired eigenmodes.");
args.AddOption(&sr, "-rs", "--refine-serial",
"Number of times to refine the mesh uniformly in serial.");
args.AddOption(&sigma, "-s", "--shift",
"Average of the desired eigenvalue range.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
// 2. Read the mesh from the given mesh file. We can handle triangular,
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes
// with the same code.
Mesh *mesh;
ifstream imesh(mesh_file);
if (!imesh)
{
cerr << "\nCan not open mesh file: " << mesh_file << '\n' << endl;
return 2;
}
mesh = new Mesh(imesh, 1, 1);
imesh.close();
int dim = mesh->Dimension();
// 3. Refine the mesh to increase the resolution. In this example we do
// 'ref_levels' of uniform refinement.
{
int ref_levels = sr;
for (int l = 0; l < ref_levels; l++)
{
mesh->UniformRefinement();
}
}
// 4. Define a finite element space on the mesh. Here we use the lowest
// order Nedelec finite elements, but we can easily switch
// to higher-order spaces by changing the value of p.
FiniteElementCollection *fec = new ND_FECollection(order, dim);
FiniteElementSpace *fespace = new FiniteElementSpace(mesh, fec);
int size = fespace->GetVSize();
cout << "Number of unknowns: " << size << endl;
cout << "Number of boundary attributes: " << mesh->bdr_attributes.Max()
<< endl;
// 5. Set up the parallel bilinear form corresponding to the EM diffusion
// operator curl muinv curl - sigma I, by adding the curl-curl and the
// mass domain integrators and finally imposing homogeneous Dirichlet
// boundary conditions. The boundary conditions are implemented by
// marking all the boundary attributes from the mesh as essential
// (Dirichlet). After serial and parallel assembly we extract the
// parallel matrices A and M.
Coefficient *muinv = new ConstantCoefficient(1.0);
Coefficient *negSigma = new ConstantCoefficient(-sigma);
BilinearForm *a = new BilinearForm(fespace);
a->AddDomainIntegrator(new CurlCurlIntegrator(*muinv));
a->AddDomainIntegrator(new VectorFEMassIntegrator(*negSigma));
a->Assemble();
Array<int> ess_bdr(mesh->bdr_attributes.Max());
ess_bdr = 1;
a->EliminateEssentialBC(ess_bdr);
a->Finalize();
BilinearForm *m = new BilinearForm(fespace);
m->AddDomainIntegrator(new VectorFEMassIntegrator());
m->Assemble();
m->EliminateEssentialBCDiag(ess_bdr, sqrt(numeric_limits<double>::min()));
m->Finalize();
// 6. Define a parallel grid function to approximate each of the
// eigenmodes returned by the solver. Use this as a template to
// create a special multi-vector object needed by the eigensolver
// which is then initialized with random values.
GridFunction x(fespace);
x = 0.0;
// 7. Define and configure the GMRES
// solver to be used within the eigensolver.
Solver * solver = NULL;
if ( false )
{
GMRESSolver * gmres = new GMRESSolver();
gmres->SetOperator(*a);
gmres->SetRelTol(1e-8);
gmres->SetMaxIter(1000);
gmres->SetPrintLevel(0);
solver = gmres;
}
else
{
#ifndef MFEM_USE_SUITESPARSE
cout << "Building MINRESSolver" << endl;
MINRESSolver * minres = new MINRESSolver();
minres->SetRelTol(1e-12);
minres->SetMaxIter(1000);
minres->SetPrintLevel(0);
solver = minres;
#else
// 7. If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
cout << "Building UMFPackSolver" << endl;
UMFPackSolver * umf_solver = new UMFPackSolver;
umf_solver->Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
solver = umf_solver;
#endif
}
solver->SetOperator(a->SpMat());
// 7. Define and configure the ARPACK eigensolver
SymGenEigensolver * eig_solver = NULL;
if (arp_solver)
{
ArPackSAUPD * arpack = new ArPackSAUPD();
arpack->SetNumModes(nev);
arpack->SetMaxIter(400);
arpack->SetTol(1e-8);
arpack->SetShift(sigma);
arpack->SetMode(3);
arpack->SetPrintLevel(2);
arpack->SetSolver(*solver);
eig_solver = arpack;
}
eig_solver->SetOperators(*a, *m);
// Obtain the eigenvalues and eigenvectors
Array<double> eigenvalues(nev);
eigenvalues = -1.0;
// arpack->Solve(eigenvalues, *eigenvectors);
eig_solver->Solve();
eig_solver->GetEigenvalues(eigenvalues);
cout << endl;
std::ios::fmtflags old_fmt = cout.flags();
cout.setf(std::ios::scientific);
std::streamsize old_prec = cout.precision(14);
for (int i=0; i<min(nev,eigenvalues.Size()); i++)
{
cout << "Eigenvalue lambda " << eigenvalues[i] << endl;
}
cout.precision(old_prec);
cout.flags(old_fmt);
cout << endl;
VisItDataCollection visit_dc("Example13", mesh);
GridFunction ** mode = new GridFunction*[min(nev,eigenvalues.Size())];
for (int i=0; i<min(nev,eigenvalues.Size()); i++)
{
mode[i] = new GridFunction(fespace);
*mode[i] = eig_solver->GetEigenvector(i);
ostringstream modeName;
modeName << "mode_" << setfill('0') << setw(2) << i;
visit_dc.RegisterField(modeName.str().c_str(),mode[i]);
}
visit_dc.Save();
// 8. Save the refined mesh and the modes. This output can
// be viewed later using GLVis: "glvis -m mesh -g mode".
{
ofstream mesh_ofs("refined.mesh");
mesh_ofs.precision(8);
mesh->Print(mesh_ofs);
for (int i=0; i<min(nev,eigenvalues.Size()); i++)
{
x = eig_solver->GetEigenvector(i);
ostringstream modeName;
modeName << "mode_" << setfill('0') << setw(2) << i;
ofstream mode_ofs(modeName.str().c_str());
mode_ofs.precision(8);
x.Save(mode_ofs);
modeName.str("");
}
}
// 9. Send the solution by socket to a GLVis server.
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream mode_sock(vishost, visport);
mode_sock.precision(8);
for (int i=0; i<min(nev,eigenvalues.Size()); i++)
{
x = eig_solver->GetEigenvector(i);
mode_sock << "solution\n" << *mesh << x << flush;
char c;
cout << "press (q)uit or (c)ontinue --> " << flush;
cin >> c;
if (c != 'c')
{
break;
}
}
mode_sock.close();
}
// 10. Free the used memory.
delete a;
delete m;
delete negSigma;
delete muinv;
delete eig_solver;
delete solver;
// delete X;
delete fespace;
delete fec;
delete mesh;
return 0;
}
#endif // MFEM_USE_ARPACK
+4 -4
View File
@@ -215,8 +215,8 @@ int main(int argc, char *argv[])
for (int i=0; i<nev; i++)
{
// convert eigenvector from HypreParVector to ParGridFunction
x = ame->GetEigenvector(i);
// convert eigenvector from Vector to ParGridFunction
x.Distribute(ame->GetEigenvector(i));
mode_name << "mode_" << setfill('0') << setw(2) << i << "."
<< setfill('0') << setw(6) << myid;
@@ -244,8 +244,8 @@ int main(int argc, char *argv[])
<< ", Lambda = " << eigenvalues[i] << endl;
}
// convert eigenvector from HypreParVector to ParGridFunction
x = ame->GetEigenvector(i);
// convert eigenvector from Vector to ParGridFunction
x.Distribute(ame->GetEigenvector(i));
mode_sock << "parallel " << num_procs << " " << myid << "\n"
<< "solution\n" << *pmesh << x << flush
+1 -1
View File
@@ -119,7 +119,7 @@ int main(int argc, char *argv[])
}
LinearForm b(&fespace);
b.AddDomainIntegrator(new VectorBoundaryLFIntegrator(f));
b.AddBoundaryIntegrator(new VectorBoundaryLFIntegrator(f));
// 6. Set up the bilinear form a(.,.) on the finite element space
// corresponding to the linear elasticity integrator with piece-wise
+1 -1
View File
@@ -140,7 +140,7 @@ int main(int argc, char *argv[])
}
ParLinearForm b(&fespace);
b.AddDomainIntegrator(new VectorBoundaryLFIntegrator(f));
b.AddBoundaryIntegrator(new VectorBoundaryLFIntegrator(f));
// 6. Set up the bilinear form a(.,.) on the finite element space
// corresponding to the linear elasticity integrator with piece-wise
+27 -9
View File
@@ -302,15 +302,21 @@ int main(int argc, char *argv[])
char vishost[] = "localhost";
int visport = 19916;
socketstream sol_sock_r(vishost, visport);
socketstream sol_sock_i(vishost, visport);
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
sol_sock_r.precision(8);
sol_sock_i.precision(8);
sol_sock_r << "solution\n" << *pmesh << u_exact->real()
<< "window_title 'Exact: Real Part'" << flush;
// Make sure all ranks have sent their real solution before initiating
// another set of GLVis connections (one from each rank):
MPI_Barrier(pmesh->GetComm());
socketstream sol_sock_i(vishost, visport);
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
sol_sock_i.precision(8);
sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
<< "window_title 'Exact: Imaginary Part'" << flush;
// Make sure all ranks have sent their imaginary solution before initiating
// another set of GLVis connections (one from each rank):
MPI_Barrier(pmesh->GetComm());
}
// 11. Set up the parallel sesquilinear form a(.,.) on the finite element
@@ -534,15 +540,21 @@ int main(int argc, char *argv[])
char vishost[] = "localhost";
int visport = 19916;
socketstream sol_sock_r(vishost, visport);
socketstream sol_sock_i(vishost, visport);
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
sol_sock_r.precision(8);
sol_sock_i.precision(8);
sol_sock_r << "solution\n" << *pmesh << u.real()
<< "window_title 'Solution: Real Part'" << flush;
// Make sure all ranks have sent their real solution before initiating
// another set of GLVis connections (one from each rank):
MPI_Barrier(pmesh->GetComm());
socketstream sol_sock_i(vishost, visport);
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
sol_sock_i.precision(8);
sol_sock_i << "solution\n" << *pmesh << u.imag()
<< "window_title 'Solution: Imaginary Part'" << flush;
// Make sure all ranks have sent their imaginary solution before initiating
// another set of GLVis connections (one from each rank):
MPI_Barrier(pmesh->GetComm());
}
if (visualization && exact_sol)
{
@@ -551,15 +563,21 @@ int main(int argc, char *argv[])
char vishost[] = "localhost";
int visport = 19916;
socketstream sol_sock_r(vishost, visport);
socketstream sol_sock_i(vishost, visport);
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
sol_sock_r.precision(8);
sol_sock_i.precision(8);
sol_sock_r << "solution\n" << *pmesh << u_exact->real()
<< "window_title 'Error: Real Part'" << flush;
// Make sure all ranks have sent their real solution before initiating
// another set of GLVis connections (one from each rank):
MPI_Barrier(pmesh->GetComm());
socketstream sol_sock_i(vishost, visport);
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
sol_sock_i.precision(8);
sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
<< "window_title 'Error: Imaginary Part'" << flush;
// Make sure all ranks have sent their imaginary solution before initiating
// another set of GLVis connections (one from each rank):
MPI_Barrier(pmesh->GetComm());
}
if (visualization)
{
+4 -4
View File
@@ -228,7 +228,7 @@ int main(int argc, char *argv[])
for (int i=0; i<nev; i++)
{
// convert eigenvector from HypreParVector to ParGridFunction
x = ame->GetEigenvector(i);
x.Distribute(ame->GetEigenvector(i));
curl.Mult(x, dx);
mode_name << "mode_" << setfill('0') << setw(2) << i << "."
@@ -295,7 +295,7 @@ int main(int argc, char *argv[])
}
// convert eigenvector from HypreParVector to ParGridFunction
x = ame->GetEigenvector(i);
x.Distribute(ame->GetEigenvector(i));
curl.Mult(x, dx);
{
@@ -469,7 +469,7 @@ int main(int argc, char *argv[])
}
// convert eigenvector from HypreParVector to ParGridFunction
x = ame->GetEigenvector(i);
x.Distribute(ame->GetEigenvector(i));
curl.Mult(x, dx);
{
@@ -599,7 +599,7 @@ int main(int argc, char *argv[])
}
// convert eigenvector from HypreParVector to ParGridFunction
x = ame->GetEigenvector(i);
x.Distribute(ame->GetEigenvector(i));
curl.Mult(x, dx);
mode_sock << "parallel " << num_procs << " " << myid << "\n"
+3 -3
View File
@@ -658,7 +658,7 @@ void ScalarWaveGuide(int mode, ParGridFunction &x)
lobpcg.SetOperator(*A);
lobpcg.Solve();
x = lobpcg.GetEigenvector(mode);
x.Distribute(lobpcg.GetEigenvector(mode));
delete A;
delete M;
@@ -714,7 +714,7 @@ void VectorWaveGuide(int mode, ParGridFunction &x)
ame.SetOperator(*A);
ame.Solve();
x = ame.GetEigenvector(mode);
x.Distribute(ame.GetEigenvector(mode));
delete A;
delete M;
@@ -780,7 +780,7 @@ void PseudoScalarWaveGuide(int mode, ParGridFunction &x_l2)
lobpcg.SetOperator(*A);
lobpcg.Solve();
x = lobpcg.GetEigenvector(mode);
x.Distribute(lobpcg.GetEigenvector(mode));
x_l2.ProjectCoefficient(xCoef);
+11 -52
View File
@@ -5,8 +5,8 @@
// Sample runs:
// ex37 -alpha 10
// ex37 -alpha 10 -pv
// ex37 -lambda 0.1 -mu 0.1
// ex37 -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
// ex37 -lambda 0.1 -mu 0.1 -growth 1
// ex37 -o 2 -alpha 10.0 -mi 50 -vf 0.4 -ntol 1e-5 -growth 1.5
// ex37 -r 6 -o 1 -alpha 25.0 -epsilon 0.02 -mi 50 -ntol 1e-5
//
// Description: This example code demonstrates the use of MFEM to solve a
@@ -55,53 +55,6 @@
using namespace std;
using namespace mfem;
/**
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
* ∫_Ω ρ dx = θ vol(Ω) as follows:
*
* 1. Compute the root of the R → R function
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
* 2. Set ψ ← ψ + c.
*
* @param psi a GridFunction to be updated
* @param target_volume θ vol(Ω)
* @param tol Newton iteration tolerance
* @param max_its Newton maximum iteration number
* @return real_t Final volume, ∫_Ω sigmoid(ψ)
*/
real_t proj(GridFunction &psi, real_t target_volume, real_t tol=1e-12,
int max_its=10)
{
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
LinearForm int_sigmoid_psi(psi.FESpace());
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
LinearForm int_der_sigmoid_psi(psi.FESpace());
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
der_sigmoid_psi));
bool done = false;
for (int k=0; k<max_its; k++) // Newton iteration
{
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
const real_t f = int_sigmoid_psi.Sum() - target_volume;
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
const real_t df = int_der_sigmoid_psi.Sum();
const real_t dc = -f/df;
psi += dc;
if (abs(dc) < tol) { done = true; break; }
}
if (!done)
{
mfem_warning("Projection reached maximum iteration without converging. "
"Result may not be accurate.");
}
int_sigmoid_psi.Assemble();
return int_sigmoid_psi.Sum();
}
/*
* ---------------------------------------------------------------
* ALGORITHM PREAMBLE
@@ -180,10 +133,11 @@ int main(int argc, char *argv[])
int ref_levels = 5;
int order = 2;
real_t alpha = 1.0;
real_t growth = 2;
real_t epsilon = 0.01;
real_t vol_fraction = 0.5;
int max_it = 1e3;
real_t itol = 1e-1;
real_t itol = 1e-2;
real_t ntol = 1e-4;
real_t rho_min = 1e-6;
real_t lambda = 1.0;
@@ -198,6 +152,8 @@ int main(int argc, char *argv[])
"Order (degree) of the finite elements.");
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
"Step length for gradient descent.");
args.AddOption(&growth, "-growth", "--alpha-growth-rate",
"Growth rate of step length for gradient descent.");
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
"Length scale for ρ.");
args.AddOption(&max_it, "-mi", "--max-it",
@@ -332,6 +288,7 @@ int main(int argc, char *argv[])
}
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
FilterSolver->SetupFEM();
FilterSolver->AssembleDiffusionBilinear();
BilinearForm mass(&control_fes);
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
@@ -385,7 +342,7 @@ int main(int argc, char *argv[])
// 11. Iterate:
for (int k = 1; k <= max_it; k++)
{
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
if (k > 1) { alpha = std::pow((real_t) k,growth); }
mfem::out << "\nStep = " << k << std::endl;
@@ -422,7 +379,9 @@ int main(int argc, char *argv[])
// Step 5 - Update design variable ψ ← proj(ψ - αG)
psi.Add(-alpha, grad);
const real_t material_volume = proj(psi, target_volume);
GridFunction alpha_grad(grad);
alpha_grad *= alpha;
const real_t material_volume = proj(psi, alpha_grad, target_volume);
// Compute ||ρ - ρ_old|| in control fes.
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
+189 -29
View File
@@ -137,7 +137,7 @@ public:
exponent(exponent_), rho_min(rho_min_)
{
MFEM_ASSERT(rho_min_ >= 0.0, "rho_min must be >= 0");
MFEM_ASSERT(rho_min_ < 1.0, "rho_min must be > 1");
MFEM_ASSERT(rho_min_ < 1.0, "rho_min must be < 1");
MFEM_ASSERT(u, "displacement field is not set");
MFEM_ASSERT(rho_filter, "density field is not set");
}
@@ -231,9 +231,12 @@ private:
FiniteElementCollection * fec = nullptr;
FiniteElementSpace * fes = nullptr;
Array<int> ess_bdr;
Array<int> ess_tdof_list;
Array<int> neumann_bdr;
GridFunction * u = nullptr;
LinearForm * b = nullptr;
BilinearForm * a = nullptr;
OperatorPtr A;
bool parallel;
#ifdef MFEM_USE_MPI
ParMesh * pmesh = nullptr;
@@ -267,6 +270,8 @@ public:
void ResetFEM();
void SetupFEM();
void UpdateEssentialTDofs();
void AssembleDiffusionBilinear(bool update_ess_tdofs=true);
void Solve();
GridFunction * GetFEMSolution();
LinearForm * GetLinearForm() {return b;}
@@ -371,6 +376,130 @@ public:
};
/**
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
* ∫_Ω ρ dx = θ vol(Ω) as follows:
*
* 1. Compute the root of the R → R function
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
* using the Illinois method
* 2. Set ψ ← ψ + c.
*
* @param psi a GridFunction to be updated
* @param alpha_grad alpha multiplied by gradient
* @param target_volume θ vol(Ω)
* @param tol Illinois iteration tolerance
* @param max_its Illinois maximum iteration number
* @return real_t Final volume (∫_Ω sigmoid(ψ) dx)
*/
real_t proj(GridFunction &psi, GridFunction &alpha_grad, real_t target_volume,
real_t tol = 1e-12, int max_its = 100)
{
#ifdef MFEM_USE_MPI
FiniteElementSpace *fes = psi.FESpace();
ParFiniteElementSpace *pfes = dynamic_cast<ParFiniteElementSpace*>(fes);
#endif
ConstantCoefficient zero_cf(0.0);
real_t a = -alpha_grad.ComputeMaxError(zero_cf);
real_t b = -a;
real_t y = 0.0;
MappedGridFunctionCoefficient sigmoid_psi(
&psi, [&y](const real_t x) { return sigmoid(x + y); });
std::unique_ptr<LinearForm> int_sigmoid_psi;
#ifdef MFEM_USE_MPI
ParGridFunction *par_psi = dynamic_cast<ParGridFunction *>(&psi);
if (par_psi)
{
int_sigmoid_psi.reset(new ParLinearForm(par_psi->ParFESpace()));
}
else
{
int_sigmoid_psi.reset(new LinearForm(psi.FESpace()));
}
#else
int_sigmoid_psi.reset(new LinearForm(psi.FESpace()));
#endif
int_sigmoid_psi->AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
y = a;
int_sigmoid_psi->Assemble();
real_t f_a = int_sigmoid_psi->Sum(); // f_a := f(a) + θ vol(Ω)
y = b;
int_sigmoid_psi->Assemble();
real_t f_b = int_sigmoid_psi->Sum(); // f_b := f(b) + θ vol(Ω)
#ifdef MFEM_USE_MPI
if (pfes)
{
MPI_Allreduce(MPI_IN_PLACE, &f_a, 1, MPITypeMap<real_t>::mpi_type,
MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(MPI_IN_PLACE, &f_b, 1, MPITypeMap<real_t>::mpi_type,
MPI_SUM, MPI_COMM_WORLD);
}
#endif
f_a -= target_volume; // f_a := f(a)
f_b -= target_volume; // f_b := f(b)
real_t c = 0.0;
real_t f_c = 0.0;
int side = 0;
bool done = false;
for (int k=0; k < max_its; k++)
{
c = (f_a * b - f_b * a) / (f_a - f_b);
if (abs(b - a) < tol * abs(b + a)) { done = true; break; }
y = c;
int_sigmoid_psi->Assemble();
f_c = int_sigmoid_psi->Sum(); // f_c := f(c) + θ vol(Ω)
#ifdef MFEM_USE_MPI
if (pfes)
{
MPI_Allreduce(MPI_IN_PLACE, &f_c, 1, MPITypeMap<real_t>::mpi_type,
MPI_SUM, MPI_COMM_WORLD);
}
#endif
f_c -= target_volume; // f_c := f(c)
if (f_c * f_b > 0)
{
b = c;
f_b = f_c;
if (side == -1) { f_a /= 2.0; }
side = -1;
}
else if (f_c * f_a > 0)
{
a = c;
f_a = f_c;
if (side == 1) { f_b /= 2.0; }
side = 1;
}
else
{
done = true; break;
}
}
if (!done)
{
mfem_warning("Projection reached maximum iteration without converging. "
"Result may not be accurate.");
}
y = 0.0;
psi += c;
int_sigmoid_psi->Assemble();
real_t material_volume = int_sigmoid_psi->Sum();
#ifdef MFEM_USE_MPI
if (pfes)
{
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1,
MPITypeMap<real_t>::mpi_type, MPI_SUM, MPI_COMM_WORLD);
}
#endif
return material_volume;
}
// Poisson solver
@@ -422,12 +551,8 @@ void DiffusionSolver::SetupFEM()
}
}
void DiffusionSolver::Solve()
void DiffusionSolver::UpdateEssentialTDofs()
{
OperatorPtr A;
Vector B, X;
Array<int> ess_tdof_list;
#ifdef MFEM_USE_MPI
if (parallel)
{
@@ -440,7 +565,39 @@ void DiffusionSolver::Solve()
#else
fes->GetEssentialTrueDofs(ess_bdr,ess_tdof_list);
#endif
*u=0.0;
}
void DiffusionSolver::AssembleDiffusionBilinear(bool update_ess_tdofs)
{
if (update_ess_tdofs)
{
UpdateEssentialTDofs();
}
#ifdef MFEM_USE_MPI
if (parallel)
{
a = new ParBilinearForm(pfes);
}
else
{
a = new BilinearForm(fes);
}
#else
a = new BilinearForm(fes);
#endif
a->AddDomainIntegrator(new DiffusionIntegrator(*diffcf));
if (masscf)
{
a->AddDomainIntegrator(new MassIntegrator(*masscf));
}
a->Assemble();
a->FormSystemMatrix(ess_tdof_list, A);
}
void DiffusionSolver::Solve()
{
Vector B, X;
if (b)
{
delete b;
@@ -475,31 +632,33 @@ void DiffusionSolver::Solve()
b->Assemble();
BilinearForm * a = nullptr;
#ifdef MFEM_USE_MPI
if (parallel)
{
a = new ParBilinearForm(pfes);
}
else
{
a = new BilinearForm(fes);
}
#else
a = new BilinearForm(fes);
#endif
a->AddDomainIntegrator(new DiffusionIntegrator(*diffcf));
if (masscf)
{
a->AddDomainIntegrator(new MassIntegrator(*masscf));
}
a->Assemble();
*u=0.0;
if (essbdr_cf)
{
u->ProjectBdrCoefficient(*essbdr_cf,ess_bdr);
}
a->FormLinearSystem(ess_tdof_list, *u, *b, A, X, B);
#ifdef MFEM_USE_MPI
if (parallel)
{
X.SetSize(pfes->TrueVSize());
B.SetSize(pfes->TrueVSize());
dynamic_cast<ParGridFunction*>(u)->ParallelAssemble(X);
dynamic_cast<ParLinearForm*>(b)->ParallelAssemble(B);
dynamic_cast<ParBilinearForm*>(a)->ParallelEliminateTDofsInRHS(
ess_tdof_list, X, B);
}
else
{
X.NewDataAndSize(u->GetData(), u->Size());
B.NewDataAndSize(b->GetData(), b->Size());
a->EliminateVDofsInRHS(ess_tdof_list, X, B);
}
#else
X.NewDataAndSize(u->GetData(), u->Size());
B.NewDataAndSize(b->GetData(), b->Size());
a->EliminateVDofsInRHS(ess_tdof_list, X, B);
#endif
CGSolver * cg = nullptr;
Solver * M = nullptr;
@@ -528,7 +687,6 @@ void DiffusionSolver::Solve()
delete M;
delete cg;
a->RecoverFEMSolution(X, *b, *u);
delete a;
}
GridFunction * DiffusionSolver::GetFEMSolution()
@@ -560,6 +718,8 @@ DiffusionSolver::~DiffusionSolver()
#endif
delete fec; fec = nullptr;
delete b;
A.Clear();
delete a;
}
+11 -60
View File
@@ -4,8 +4,8 @@
//
// Sample runs:
// mpirun -np 4 ex37p -alpha 10 -pv
// mpirun -np 4 ex37p -lambda 0.1 -mu 0.1
// mpirun -np 4 ex37p -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
// mpirun -np 4 ex37p -lambda 0.1 -mu 0.1 -growth 1
// mpirun -np 4 ex37p -o 2 -alpha 10.0 -mi 50 -vf 0.4 -ntol 1e-5 -growth 1.5
// mpirun -np 4 ex37p -r 6 -o 2 -alpha 10.0 -epsilon 0.02 -mi 50 -ntol 1e-5
//
// Description: This example code demonstrates the use of MFEM to solve a
@@ -54,61 +54,6 @@
using namespace std;
using namespace mfem;
/**
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
* ∫_Ω ρ dx = θ vol(Ω) as follows:
*
* 1. Compute the root of the R → R function
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
* 2. Set ψ ← ψ + c.
*
* @param psi a GridFunction to be updated
* @param target_volume θ vol(Ω)
* @param tol Newton iteration tolerance
* @param max_its Newton maximum iteration number
* @return real_t Final volume, ∫_Ω sigmoid(ψ)
*/
real_t proj(ParGridFunction &psi, real_t target_volume, real_t tol=1e-12,
int max_its=10)
{
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
ParLinearForm int_sigmoid_psi(psi.ParFESpace());
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
ParLinearForm int_der_sigmoid_psi(psi.ParFESpace());
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
der_sigmoid_psi));
bool done = false;
for (int k=0; k<max_its; k++) // Newton iteration
{
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
real_t f = int_sigmoid_psi.Sum();
MPI_Allreduce(MPI_IN_PLACE, &f, 1, MPITypeMap<real_t>::mpi_type,
MPI_SUM, MPI_COMM_WORLD);
f -= target_volume;
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
real_t df = int_der_sigmoid_psi.Sum();
MPI_Allreduce(MPI_IN_PLACE, &df, 1, MPITypeMap<real_t>::mpi_type,
MPI_SUM, MPI_COMM_WORLD);
const real_t dc = -f/df;
psi += dc;
if (abs(dc) < tol) { done = true; break; }
}
if (!done)
{
mfem_warning("Projection reached maximum iteration without converging. "
"Result may not be accurate.");
}
int_sigmoid_psi.Assemble();
real_t material_volume = int_sigmoid_psi.Sum();
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1,
MPITypeMap<real_t>::mpi_type, MPI_SUM, MPI_COMM_WORLD);
return material_volume;
}
/*
* ---------------------------------------------------------------
* ALGORITHM PREAMBLE
@@ -193,10 +138,11 @@ int main(int argc, char *argv[])
int ref_levels = 5;
int order = 2;
real_t alpha = 1.0;
real_t growth = 2;
real_t epsilon = 0.01;
real_t vol_fraction = 0.5;
int max_it = 1e3;
real_t itol = 1e-1;
real_t itol = 1e-2;
real_t ntol = 1e-4;
real_t rho_min = 1e-6;
real_t lambda = 1.0;
@@ -211,6 +157,8 @@ int main(int argc, char *argv[])
"Order (degree) of the finite elements.");
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
"Step length for gradient descent.");
args.AddOption(&growth, "-growth", "--alpha-growth-rate",
"Growth rate of step length for gradient descent.");
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
"Length scale for ρ.");
args.AddOption(&max_it, "-mi", "--max-it",
@@ -359,6 +307,7 @@ int main(int argc, char *argv[])
}
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
FilterSolver->SetupFEM();
FilterSolver->AssembleDiffusionBilinear();
ParBilinearForm mass(&control_fes);
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
@@ -412,7 +361,7 @@ int main(int argc, char *argv[])
// 11. Iterate:
for (int k = 1; k <= max_it; k++)
{
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
if (k > 1) { alpha = std::pow((real_t) k,growth); }
if (myid == 0)
{
@@ -452,7 +401,9 @@ int main(int argc, char *argv[])
// Step 5 - Update design variable ψ ← proj(ψ - αG)
psi.Add(-alpha, grad);
const real_t material_volume = proj(psi, target_volume);
ParGridFunction alpha_grad(grad);
alpha_grad *= alpha;
const real_t material_volume = proj(psi, alpha_grad, target_volume);
// Compute ||ρ - ρ_old|| in control fes.
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
+5 -1
View File
@@ -9,6 +9,7 @@
// ex4 -m ../data/beam-hex.mesh -o 2 -pa
// ex4 -m ../data/escher.mesh
// ex4 -m ../data/fichera.mesh -o 2 -hb
// ex4 -m ../data/fichera.mesh -o 2 -hb -ea
// ex4 -m ../data/fichera-q2.vtk
// ex4 -m ../data/fichera-q3.mesh -o 2 -sc
// ex4 -m ../data/square-disc-nurbs.mesh
@@ -18,6 +19,7 @@
// ex4 -m ../data/amr-quad.mesh
// ex4 -m ../data/amr-hex.mesh
// ex4 -m ../data/amr-hex.mesh -o 2 -hb
// ex4 -m ../data/amr-hex.mesh -o 2 -hb -ea
// ex4 -m ../data/fichera-amr.mesh -o 2 -sc
// ex4 -m ../data/ref-prism.mesh -o 1
// ex4 -m ../data/octahedron.mesh -o 1
@@ -25,6 +27,8 @@
//
// Device sample runs:
// ex4 -m ../data/star.mesh -pa -d cuda
// ex4 -m ../data/star.mesh -hb -ea -d cuda
// ex4 -m ../data/amr-quad.mesh -hb -ea -d cuda
// ex4 -m ../data/star.mesh -pa -d raja-cuda
// ex4 -m ../data/star.mesh -pa -d raja-omp
// ex4 -m ../data/beam-hex.mesh -pa -d cuda
@@ -193,7 +197,7 @@ int main(int argc, char *argv[])
cout << "Size of linear system: " << A->Height() << endl;
// 11. Solve the linear system A X = B.
if (!pa)
if (!pa && (!ea || hybridization))
{
#ifndef MFEM_USE_SUITESPARSE
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
+6 -1
View File
@@ -9,6 +9,7 @@
// mpirun -np 4 ex4p -m ../data/beam-hex.mesh -o 2 -pa
// mpirun -np 4 ex4p -m ../data/escher.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/fichera.mesh -o 2 -hb
// mpirun -np 4 ex4p -m ../data/fichera.mesh -o 2 -hb -ea
// mpirun -np 4 ex4p -m ../data/fichera-q2.vtk
// mpirun -np 4 ex4p -m ../data/fichera-q3.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/square-disc-nurbs.mesh -o 3
@@ -17,14 +18,18 @@
// mpirun -np 4 ex4p -m ../data/periodic-cube.mesh -no-bc
// mpirun -np 4 ex4p -m ../data/amr-quad.mesh
// mpirun -np 3 ex4p -m ../data/amr-quad.mesh -o 2 -hb
// mpirun -np 3 ex4p -m ../data/amr-quad.mesh -o 2 -hb -ea
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -hb
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -hb -ea
// mpirun -np 4 ex4p -m ../data/ref-prism.mesh -o 1
// mpirun -np 4 ex4p -m ../data/octahedron.mesh -o 1
// mpirun -np 4 ex4p -m ../data/star-surf.mesh -o 3 -hb
//
// Device sample runs:
// mpirun -np 4 ex4p -m ../data/star.mesh -pa -d cuda
// mpirun -np 4 ex4p -m ../data/star.mesh -ea -hb -d cuda
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -ea -hb -d cuda
// mpirun -np 4 ex4p -m ../data/star.mesh -pa -d raja-cuda
// mpirun -np 4 ex4p -m ../data/star.mesh -pa -d raja-omp
// mpirun -np 4 ex4p -m ../data/beam-hex.mesh -pa -d cuda
@@ -230,7 +235,7 @@ int main(int argc, char *argv[])
pcg->SetMaxIter(2000);
pcg->SetPrintLevel(1);
if (hybridization) { prec = new HypreBoomerAMG(*A.As<HypreParMatrix>()); }
else if (pa) { prec = new OperatorJacobiSmoother(*a, ess_tdof_list); }
else if (pa || ea) { prec = new OperatorJacobiSmoother(*a, ess_tdof_list); }
else
{
ParFiniteElementSpace *prec_fespace =
+5
View File
@@ -31,6 +31,9 @@ SEQ_DEVICE_EXAMPLES = ex1 ex3 ex4 ex5 ex6 ex9 ex14 ex22 ex24 ex25 ex26 ex34
PAR_DEVICE_EXAMPLES = ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex14p \
ex22p ex24p ex25p ex26p ex34p ex35p
ifeq ($(MFEM_USE_ARPACK),YES)
SEQ_EXAMPLES += ex11 ex13
endif
ifeq ($(MFEM_USE_LAPACK),YES)
SEQ_EXAMPLES += ex38
endif
@@ -157,6 +160,8 @@ ex37-test-seq: ex37
@$(call mfem-test,$<,, Serial example,-mi 3)
ex37p-test-par: ex37p
@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-mi 3)
ex39-test-seq: ex39
@$(call mfem-test,$<,, Serial example,-m ../data/compass.mesh)
ex41-test-seq: ex41
@$(call mfem-test,$<,, Serial example,-tf 1.0)
ex41p-test-par: ex41p
+42 -9
View File
@@ -729,7 +729,8 @@ void BilinearForm::Assemble(int skip_zeros)
tr = mesh -> GetBdrFaceTransformations (i);
if (tr != NULL)
{
fes -> GetElementVDofs (tr -> Elem1No, vdofs);
mfem::DofTransformation doftrans;
fes -> GetElementVDofs (tr -> Elem1No, vdofs, doftrans);
fe1 = fes -> GetFE (tr -> Elem1No);
// The fe2 object is really a dummy and not used on the boundaries,
// but we can't dereference a NULL pointer, and we don't want to
@@ -743,6 +744,7 @@ void BilinearForm::Assemble(int skip_zeros)
boundary_face_integs[k] -> AssembleFaceMatrix (*fe1, *fe2, *tr,
elemmat);
doftrans.TransformDual(elemmat);
mat -> AddSubMatrix (vdofs, vdofs, elemmat, skip_zeros);
}
}
@@ -825,14 +827,46 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
Vector &b, OperatorHandle &A, Vector &X,
Vector &B, int copy_interior)
{
const SparseMatrix *P = fes->GetConformingProlongation();
const SparseMatrix *R = fes->GetConformingRestriction();
if (ext)
{
if (hybridization)
{
FormSystemMatrix(ess_tdof_list, A);
ConstrainedOperator A_constrained(this, ess_tdof_list);
A_constrained.EliminateRHS(x, b);
hybridization->ReduceRHS(b, B);
std::unique_ptr<ConstrainedOperator> A_constrained([&]()
{
Operator *op;
Operator::FormSystemOperator(ess_tdof_list, op);
return dynamic_cast<ConstrainedOperator*>(op);
}());
MFEM_ASSERT(A_constrained != nullptr, "");
Vector conf_b, conf_x;
if (P)
{
// Nonconforming
conf_b.SetSize(P->Width());
conf_x.SetSize(P->Width());
P->MultTranspose(b, conf_b);
R->Mult(x, conf_x);
}
else
{
// Conforming
conf_b.MakeRef(b, 0, b.Size());
conf_x.MakeRef(x, 0, x.Size());
}
A_constrained->EliminateRHS(conf_x, conf_b);
if (P)
{
R->MultTranspose(conf_b, b); // store eliminated rhs in b
}
hybridization->ReduceRHS(conf_b, B);
X.SetSize(B.Size());
X = 0.0;
}
@@ -842,7 +876,6 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
}
return;
}
const SparseMatrix *P = fes->GetConformingProlongation();
FormSystemMatrix(ess_tdof_list, A);
// Transform the system and perform the elimination in B, based on the
@@ -878,7 +911,6 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
if (hybridization)
{
// Reduction to the Lagrange multipliers system
const SparseMatrix *R = fes->GetConformingRestriction();
Vector conf_b(P->Width()), conf_x(P->Width());
P->MultTranspose(b, conf_b);
R->Mult(x, conf_x);
@@ -891,7 +923,6 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
else
{
// Variational restriction with P
const SparseMatrix *R = fes->GetConformingRestriction();
B.SetSize(P->Width());
P->MultTranspose(b, B);
X.SetSize(R->Height());
@@ -1694,6 +1725,7 @@ void MixedBilinearForm::Assemble(int skip_zeros)
}
}
DofTransformation dom_dof_trans, ran_dof_trans;
for (int i = 0; i < trial_fes -> GetNBE(); i++)
{
const int bdr_attr = mesh->GetBdrAttribute(i);
@@ -1702,8 +1734,8 @@ void MixedBilinearForm::Assemble(int skip_zeros)
ftr = mesh -> GetBdrFaceTransformations (i);
if (ftr != NULL)
{
trial_fes->GetElementVDofs(ftr->Elem1No, trial_vdofs);
test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs);
trial_fes->GetElementVDofs(ftr->Elem1No, trial_vdofs, dom_dof_trans);
test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs, ran_dof_trans);
trial_fe1 = trial_fes->GetFE(ftr->Elem1No);
test_fe1 = test_fes->GetFE(ftr->Elem1No);
// The test_fe2 object is really a dummy and not used on the
@@ -1719,6 +1751,7 @@ void MixedBilinearForm::Assemble(int skip_zeros)
boundary_face_integs[k]->AssembleFaceMatrix(*trial_fe1, *test_fe1, *trial_fe2,
*test_fe2,
*ftr, elemmat);
TransformDual(ran_dof_trans, dom_dof_trans, elemmat);
mat->AddSubMatrix(test_vdofs, trial_vdofs, elemmat, skip_zeros);
}
}
+1 -1
View File
@@ -2710,7 +2710,7 @@ public:
/** Integrator for $(-Q u, \nabla v)$ for Nedelec ($u$) and $H^1$ ($v$) elements.
This is equivalent to a weak divergence of the $H(curl$ basis functions. */
This is equivalent to a weak divergence of the $H(curl)$ basis functions. */
class VectorFEWeakDivergenceIntegrator: public BilinearFormIntegrator
{
protected:
+67 -28
View File
@@ -39,8 +39,8 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
b_type = b_type_i;
cp_type = cp_type_i;
tol = tol_i;
lbound.SetSize(nb, ncp);
ubound.SetSize(nb, ncp);
lbound.SetSize(ncp, nb);
ubound.SetSize(ncp, nb);
nodes.SetSize(nb);
weights.SetSize(nb);
control_points.SetSize(ncp);
@@ -125,21 +125,25 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
{
if (j == 0)
{
lbound(i, j) = bv(i);
ubound(i, j) = bv(i);
lbound(j,i) = bv(i);
ubound(j,i) = bv(i);
}
else if (j == ncp-1)
{
lbound(i, j) = bv(i);
ubound(i, j) = bv(i);
lbound(j,i) = bv(i);
ubound(j,i) = bv(i);
}
else
{
vals(0) = bv(i);
vals(1) = bmv(i) + dm*bdmv(i);
vals(2) = bpv(i) + dp*bdpv(i);
lbound(i, j) = vals.Min()-tol; // tolerance for good measure
ubound(i, j) = vals.Max()+tol; // tolerance for good measure
lbound(j,i) = vals.Min()-tol; // tolerance for good measure
ubound(j,i) = vals.Max()+tol; // tolerance for good measure
if (b_type == 2)
{
lbound(j,i) = std::max(lbound(j,i),0_r);
}
}
}
}
@@ -273,8 +277,7 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
intmax.SetSize(ncp);
intmin = 0.0;
intmax = 0.0;
Vector coeffm(nb);
coeffm = 0.0;
Vector coeffm;
real_t a0 = 0.0;
real_t a1 = 0.0;
@@ -302,6 +305,8 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
// compute L2 projection for linear bases: a0 + a1*x
if (proj)
{
coeffm.SetSize(nb);
coeffm = 0.0;
for (int i = 0; i < nb; i++)
{
x = 2.0*nodes_int(i)-1;
@@ -342,8 +347,8 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
real_t c = coeffm(i);
for (int j = 0; j < ncp; j++)
{
intmin(j) += min(lbound(i,j)*c, ubound(i,j)*c);
intmax(j) += max(lbound(i,j)*c, ubound(i,j)*c);
intmin(j) += min(lbound(j,i)*c, ubound(j,i)*c);
intmax(j) += max(lbound(j,i)*c, ubound(j,i)*c);
}
}
}
@@ -474,10 +479,10 @@ void PLBound::Get2DBounds(const Vector &coeff, Vector &intmin,
real_t w1 = intmaxT(id2++);
for (int k = 0; k < ncp; k++) // kth row
{
vals(0) = w0*lbound(j,k);
vals(1) = w0*ubound(j,k);
vals(2) = w1*lbound(j,k);
vals(3) = w1*ubound(j,k);
vals(0) = w0*lbound(k,j);
vals(1) = w0*ubound(k,j);
vals(2) = w1*lbound(k,j);
vals(3) = w1*ubound(k,j);
intmin(k*ncp+i) += vals.Min();
intmax(k*ncp+i) += vals.Max();
}
@@ -553,17 +558,17 @@ void PLBound::Get3DBounds(const Vector &coeff, Vector &intmin,
for (int i = 0; i < nb; i++)
{
x = 2.0*nodes(i)-1; // x-coordinate
minBounds(i) -= a0V(j) + a1V(j)*x;
maxBounds(i) -= a0V(j) + a1V(j)*x;
minNodalVals(i) -= a0V(j) + a1V(j)*x;
maxNodalVals(i) -= a0V(j) + a1V(j)*x;
}
// Compute Bernstein coefficients
LUFactors lu(basisMatLU.GetData(), lu_ip.GetData());
lu.Solve(nb, 1, minBounds.GetData());
lu.Solve(nb, 1, maxBounds.GetData());
lu.Solve(nb, 1, minNodalVals.GetData());
lu.Solve(nb, 1, maxNodalVals.GetData());
for (int i = 0; i < nb; i++)
{
intminT(i*ncp2+j) = minBounds(i);
intmaxT(i*ncp2+j) = maxBounds(i);
intminT(i*ncp2+j) = minNodalVals(i);
intmaxT(i*ncp2+j) = maxNodalVals(i);
}
}
}
@@ -617,10 +622,10 @@ void PLBound::Get3DBounds(const Vector &coeff, Vector &intmin,
real_t w1 = intmaxT(id2++);
for (int k = 0; k < ncp; k++) // kth slice
{
vals(0) = w0*lbound(j,k);
vals(1) = w0*ubound(j,k);
vals(2) = w1*lbound(j,k);
vals(3) = w1*ubound(j,k);
vals(0) = w0*lbound(k,j);
vals(1) = w0*ubound(k,j);
vals(2) = w1*lbound(k,j);
vals(3) = w1*ubound(k,j);
intmin(k*ncp2+i) += vals.Min();
intmax(k*ncp2+i) += vals.Max();
}
@@ -653,7 +658,8 @@ void PLBound::SetupBernsteinBasisMat(DenseMatrix &basisMat,
Vector &nodesBern) const
{
const int nbern = nodesBern.Size();
L2_SegmentElement el(nbern-1, 2); // we use L2 to leverage lexicographic order
L2_SegmentElement el(nbern-1, 2);
// we use L2 to leverage lexicographic order
Array<int> ordering = el.GetLexicographicOrdering();
basisMat.SetSize(nbern, nbern);
Vector shape(nbern);
@@ -666,6 +672,39 @@ void PLBound::SetupBernsteinBasisMat(DenseMatrix &basisMat,
}
}
DenseMatrix PLBound::GetBoundingMatrix(int dim, bool is_lower) const
{
if (dim > 1)
{
const int ncpd = static_cast<int>(std::pow(ncp, dim));
const int nbd = static_cast<int>(std::pow(nb, dim));
DenseMatrix boundND(ncpd, nbd);
Vector phimin, phimax, col;
Vector coeffs(nbd);
coeffs = 0.0;
for (int j = 0; j < nbd; j++)
{
coeffs(j) = 1.0;
boundND.GetColumnReference(j, col);
GetNDBounds(dim, coeffs, phimin, phimax);
col = is_lower ? phimin : phimax;
coeffs(j) = 0.0;
}
return boundND;
}
return is_lower ? lbound : ubound;
}
DenseMatrix PLBound::GetLowerBoundMatrix(int dim) const
{
return GetBoundingMatrix(dim, true);
}
DenseMatrix PLBound::GetUpperBoundMatrix(int dim) const
{
return GetBoundingMatrix(dim, false);
}
constexpr int PLBound::min_ncp_gl_x[2][11];
constexpr int PLBound::min_ncp_gll_x[2][11];
constexpr int PLBound::min_ncp_pos_x[2][11];
@@ -716,4 +755,4 @@ void PLBound::Print(std::ostream &outp) const
ubound.Print(outp);
}
}
}
+71 -20
View File
@@ -19,14 +19,18 @@ namespace mfem
{
/** @name Piecewise linear bounds of bases
\brief Piecewise linear bounds of bases can be used to compute bounds on the grid function in each element. The bounds for the bases are constructed based on the following parameters:
\brief Piecewise linear bounds of bases can be used to compute bounds on
the grid function in each element. The bounds for the bases are constructed
based on the following parameters:
(i) @b nb: number of bases/nodes in 1D (i.e. polynomial order+1),
(ii) @b b_type: bases type, 0 - Lagrange interpolants on Gauss-Legendre nodes, 1 - Lagrange interpolants on Gauss-Lobatto-Legendre nodes, and
(ii) @b b_type: bases type, 0 - Lagrange interpolants on Gauss-Legendre
nodes, 1 - Lagrange interpolants on Gauss-Lobatto-Legendre nodes, and
2 - Positive/Bernstein bases on uniformly distributed nodes,
(iii) @b ncp: number of control points used to construct the piecewise linear bounds
(iii) @b ncp: number of control points used to construct the piecewise
linear bounds
(iv) @b cp_type: control point distribution. 0 - GL + end-points,
1 - Chebyshev.
@@ -35,7 +39,9 @@ namespace mfem
If the user does not specify @b ncp and @b cp_type, the minimum value of
@b ncp is used that would bound the bases for the @b cp_type. We default
to @b cp_type = 0 as it requires fewer number of points to bound the bases. Typically, @b ncp = 2 @b nb is sufficient to get fairly compact bounds, and increasing @b ncp results in tighter bounds.
to @b cp_type = 0 as it requires fewer number of points to bound the bases.
Typically, @b ncp = 2 @b nb is sufficient to get fairly compact bounds, and
increasing @b ncp results in tighter bounds.
Finally, only tensor-product elements are currently supported.
@@ -54,7 +60,7 @@ private:
bool proj = true; // Use linear projection to compute bounds.
real_t tol = 0.0; // offset bounds to avoid round-off errors
Vector nodes, weights, control_points;
DenseMatrix lbound, ubound; // nb x ncp matrices with bounds of all bases
DenseMatrix lbound, ubound; // ncp x nb matrices with bounds of all bases
// Some auxillary storage for computing the bounds with Bernstein
DenseMatrix basisMatNodes; // Bernstein bases at equispaced nodes
DenseMatrix basisMatInt; // Bernstein bases at GLL nodes
@@ -80,6 +86,9 @@ private:
{3,5,8,9,11,12,13,13,14,15,16}
};
/// Helper function to extract lower or upper bounding matrix
DenseMatrix GetBoundingMatrix(int dim, bool is_lower) const;
public:
// Constructor
PLBound(const int nb_i, const int ncp_i, const int b_type_i,
@@ -92,40 +101,82 @@ public:
PLBound(const FiniteElementSpace *fes,
const int ncp_i = -1, const int cp_type_i = 0);
// Get minimum number of control points needed to bound the given bases
/// Get minimum number of control points needed to bound the given bases
int GetMinimumPointsForGivenBases(int nb_i, int b_type_i,
int cp_type_i) const;
// Print information about the bounds
/// Print information about the bounds
void Print(std::ostream &outp = mfem::out) const;
// Enable (default) or disable linear projection before bounding.
// This projection increases the computational cost but results in tighter
// bounds.
/** @brief Enable (default) or disable linear projection before bounding.
*
* @details This projection increases the computational cost but results in
* tighter bounds.
*/
void SetProjectionFlagForBounding(bool proj_) { proj = proj_; }
/// Compute piecewise linear bounds for the lexicographically-ordered
/// coefficients in @a coeff in 1D/2D/3D.
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
* nodal coefficients in @a coeff in 1D/2D/3D.
*
* @param[in] rdim The spatial dimension of the element (1, 2, or 3).
* @param[in] coeff The vector of lexicographically-ordered coefficients.
* Should be of size nb^rdim, where nb is the number of
* bases/nodes in 1D. These coefficients must correspond
* to the bases type and number of bases, used in the
* constructor of PLBound.
*
* @param[out] intmin The vector of minimum bound for all control points.
* @param[out] intmax The vector of maximum bound for all control points.
* Both intmin and intmax are of size ncp^rdim, where
* ncp is the number of control points in 1D, and are
* ordered lexicographically.
*/
void GetNDBounds(const int rdim, const Vector &coeff,
Vector &intmin, Vector &intmax) const;
/// Get number of control points used to compute the bounds.
int GetNControlPoints() const { return ncp; }
/// Get 1D control point locations (lexicographic order) in [0,1].
const Vector &GetControlPoints() const { return control_points; }
/** @brief Get lower and upper bounding matrix (ncp^dim x nb^dim)
*
* @details The matrices can be used to compute the bounds at control points
* by a simple matrix-vector product with the
* lexicographically-ordered nodal coefficients.
* The resulting output is also lexicographically-ordered.
*
* @note These matrices do not account for the linear projection step that
* is optionally done in GetNDBounds before bounding the function.
*/
///@{
DenseMatrix GetLowerBoundMatrix(int dim = 1) const;
DenseMatrix GetUpperBoundMatrix(int dim = 1) const;
///@}
private:
/// Compute piecewise linear bounds for the lexicographically-ordered
/// coefficients in @a coeff in 1D.
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
* nodal coefficients in @a coeff in 1D.
* See GetNDBounds for details of the input and output parameters.
*/
void Get1DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
/// Compute piecewise linear bounds for the lexicographically-ordered
/// coefficients in @a coeff in 2D.
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
* nodal coefficients in @a coeff in 2D.
* See GetNDBounds for details of the input and output parameters.
*/
void Get2DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
/// Compute piecewise linear bounds for the lexicographically-ordered
/// coefficients in @a coeff in 3D.
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
* nodal coefficients in @a coeff in 3D.
* See GetNDBounds for details of the input and output parameters.
*/
void Get3DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
/// Setup matrix used to compute values at given 1D locations in [0,1]
/// for Bernstein bases.
/** @brief Setup matrix used to compute values at given 1D locations in [0,1]
* for Bernstein bases.
*/
void SetupBernsteinBasisMat(DenseMatrix &basisMat, Vector &nodesBern) const;
void Setup(const int nb_i, const int ncp_i, const int b_type_i,
+67
View File
@@ -1302,6 +1302,73 @@ real_t TraceCoefficient::Eval(ElementTransformation &T,
return ma.Trace();
}
VectorComponentCoefficient::VectorComponentCoefficient(VectorCoefficient &A,
int c)
: a(&A), va(A.GetVDim())
{
SetComponent(c);
}
void VectorComponentCoefficient::SetComponent(int c)
{
MFEM_ASSERT(c < a->GetVDim() && c >= 0,
"VectorComponentCoefficient: "
"Index not in range.");
component = c;
}
void VectorComponentCoefficient::SetTime(real_t t)
{
if (a) { a->SetTime(t); }
this->Coefficient::SetTime(t);
}
real_t VectorComponentCoefficient::Eval(ElementTransformation &T,
const IntegrationPoint &ip)
{
a->Eval(va, T, ip);
return va[component];
}
MatrixComponentCoefficient::MatrixComponentCoefficient(MatrixCoefficient &A,
int ri, int ci)
: a(&A), ma(A.GetHeight(), A.GetWidth())
{
SetRowIndex(ri);
SetColumnIndex(ci);
}
void MatrixComponentCoefficient::SetRowIndex(int ri)
{
MFEM_ASSERT(ri < a->GetHeight() && ri >= 0,
"MatrixComponentCoefficient: "
"Row index not in range.");
row_idx = ri;
}
void MatrixComponentCoefficient::SetColumnIndex(int ci)
{
MFEM_ASSERT(ci < a->GetWidth() && ci >= 0,
"MatrixComponentCoefficient: "
"Column index not in range.");
col_idx = ci;
}
void MatrixComponentCoefficient::SetTime(real_t t)
{
if (a) { a->SetTime(t); }
this->Coefficient::SetTime(t);
}
real_t MatrixComponentCoefficient::Eval(ElementTransformation &T,
const IntegrationPoint &ip)
{
a->Eval(ma, T, ip);
return ma(row_idx,col_idx);
}
VectorSumCoefficient::VectorSumCoefficient(int dim)
: VectorCoefficient(dim),
ACoef(NULL), BCoef(NULL),
+86 -5
View File
@@ -52,6 +52,9 @@ public:
/// Get the time for time dependent coefficients
real_t GetTime() { return time; }
/// Returns dimension of the vector.
int GetVDim() { return 1; }
/** @brief Evaluate the coefficient in the element described by @a T at the
point @a ip. */
/** @note When this method is called, the caller must make sure that the
@@ -114,11 +117,10 @@ public:
/// Construct the constant coefficient using a vector of constants.
/** @a c should be a vector defined by attributes, so for region with
attribute @a i @a c[i-1] is the coefficient in that region */
PWConstCoefficient(Vector &c)
{ constants.SetSize(c.Size()); constants=c; }
PWConstCoefficient(const Vector &c) { UpdateConstants(c); }
/// Update the constants with vector @a c.
void UpdateConstants(Vector &c) { constants.SetSize(c.Size()); constants=c; }
void UpdateConstants(const Vector &c) { constants = c; }
/// Return a reference to the i-th constant
real_t &operator()(int i) { return constants(i-1); }
@@ -1332,8 +1334,8 @@ public:
/// Get the coefficient located at (i,j) in the matrix.
Coefficient* GetCoeff (int i, int j) { return Coeff[i*width+j]; }
/** @brief Set the coefficient located at (i,j) in the matrix. By default by
default this will take ownership of the Coefficient passed in, but this
/** @brief Set the coefficient located at (i,j) in the matrix. By default
this will take ownership of the Coefficient passed in, but this
can be overridden with the @a own parameter. */
void Set(int i, int j, Coefficient * c, bool own=true);
@@ -1873,6 +1875,85 @@ public:
const IntegrationPoint &ip) override;
};
/// Scalar coefficient defined as component of a vector coefficient
class VectorComponentCoefficient : public Coefficient
{
private:
VectorCoefficient *a = nullptr;
mutable Vector va;
int component;
public:
/// Construct with a vector coefficient.
VectorComponentCoefficient(VectorCoefficient &A)
: a(&A), va(A.GetVDim()), component(0) {};
VectorComponentCoefficient(VectorCoefficient &A, int c);
/// Set the time for internally stored coefficients
void SetTime(real_t t) override;
/// Reset the vector coefficient
void SetACoef(VectorCoefficient &A) { a = &A; }
/// Return the vector coefficient
VectorCoefficient * GetACoef() const { return a; }
/// Set the component
void SetComponent(int c);
/// Return the component
int GetComponent() const { return component; }
/// Evaluate the trace coefficient at @a ip.
real_t Eval(ElementTransformation &T,
const IntegrationPoint &ip) override;
};
/// Scalar coefficient defined as component of a matrix coefficient
class MatrixComponentCoefficient : public Coefficient
{
private:
MatrixCoefficient *a = nullptr;
mutable DenseMatrix ma;
int row_idx,col_idx;
public:
MatrixComponentCoefficient(MatrixCoefficient &A)
: a(&A), ma(A.GetHeight(), A.GetWidth()), row_idx(0), col_idx(0) {};
/// Construct with the matrix coefficient.
MatrixComponentCoefficient(MatrixCoefficient &A, int ri, int ci);
/// Set the time for internally stored coefficients
void SetTime(real_t t) override;
/// Reset the matrix coefficient
void SetACoef(MatrixCoefficient &A) { a = &A; }
/// Return the matrix coefficient
MatrixCoefficient * GetACoef() const { return a; }
/// Reset the index
void SetRowIndex(int ri);
/// Return the index
int GetRowIndex() const { return row_idx; }
/// Reset the index
void SetColumnIndex(int ci);
/// Return the index
int GetColumnIndex() const { return col_idx; }
/// Evaluate the trace coefficient at @a ip.
real_t Eval(ElementTransformation &T,
const IntegrationPoint &ip) override;
};
/// Vector coefficient defined as the linear combination of two vectors
class VectorSumCoefficient : public VectorCoefficient
{
+19
View File
@@ -82,6 +82,25 @@ public:
/// underlying #fes
int VectorDim() const;
/// Copy assignment. Only the data of the base class Vector is copied.
/** It is assumed that this object and @a rhs use FiniteElementSpace%s that
have the same size.
@note Defining this method overwrites the implicitly defined copy
assignment operator. */
ComplexGridFunction &operator=(const ComplexGridFunction &rhs)
{ return operator=((const Vector &)rhs); }
/// Copy the data from @a v.
/** The size of @a v must be equal to double of the size of the associated
FiniteElementSpace #fes. */
ComplexGridFunction &operator=(const Vector &v)
{
MFEM_ASSERT(fes && v.Size() == 2*fes->GetVSize(), "");
Vector::operator=(v);
return *this;
}
/// Assign constant values to the ComplexGridFunction data.
ComplexGridFunction &operator=(const std::complex<real_t> & value)
{ *gfr = value.real(); *gfi = value.imag(); return *this; }
+18 -5
View File
@@ -492,6 +492,8 @@ void VisItDataCollection::SaveRootFile()
to_padded_string(cycle, pad_digits_cycle) +
".mfem_root";
std::ofstream root_file(root_name);
MFEM_VERIFY(root_file.is_open(),
"Failed to open ofstream " << root_name);
root_file << GetVisItRootString();
if (!root_file)
{
@@ -977,7 +979,10 @@ void ParaViewDataCollection::Save()
// Save the local part of the mesh and grid functions fields to the local
// VTU file. Also save coefficient fields.
{
std::ofstream os(vtu_prefix + GenerateVTUFileName("proc", myid));
std::string os_str = vtu_prefix + GenerateVTUFileName("proc", myid);
std::ofstream os(os_str);
MFEM_VERIFY(os.is_open(),
"Failed to open ofstream " << os_str);
os.precision(precision);
SaveDataVTU(os, levels_of_detail);
}
@@ -989,7 +994,10 @@ void ParaViewDataCollection::Save()
"QuadratureFunction output is not supported for "
"ParaViewDataCollection on domain boundary!");
const std::string &field_name = qfield.first;
std::ofstream os(vtu_prefix + GenerateVTUFileName(field_name, myid));
std::string os_str = vtu_prefix + GenerateVTUFileName(field_name, myid);
std::ofstream os(os_str);
MFEM_VERIFY(os.is_open(),
"Failed to open ofstream " << os_str);
qfield.second->SaveVTU(os, pv_data_format, GetCompressionLevel(), field_name);
}
@@ -1000,7 +1008,10 @@ void ParaViewDataCollection::Save()
{
// Create the main PVTU file
{
std::ofstream pvtu_out(vtu_prefix + GeneratePVTUFileName("data"));
std::string os_str = vtu_prefix + GeneratePVTUFileName("data");
std::ofstream pvtu_out(os_str);
MFEM_VERIFY(pvtu_out.is_open(),
"Failed to open ofstream " << os_str);
WritePVTUHeader(pvtu_out);
// Grid function fields and coefficient fields
@@ -1055,8 +1066,10 @@ void ParaViewDataCollection::Save()
const std::string &q_field_name = q_field.first;
std::string q_fname = GeneratePVTUPath() + "/"
+ GeneratePVTUFileName(q_field_name);
std::ofstream pvtu_out(col_path + "/" + q_fname);
std::string os_str = col_path + "/" + q_fname;
std::ofstream pvtu_out(os_str);
MFEM_VERIFY(pvtu_out.is_open(),
"Failed to open ofstream " << os_str);
WritePVTUHeader(pvtu_out);
int vec_dim = q_field.second->GetVDim();
pvtu_out << "<PPointData>\n";
+11 -8
View File
@@ -90,8 +90,8 @@ void map_quadrature_data_to_fields_impl(
}
else
{
MFEM_ABORT("quadrature data mapping to field is not implemented for"
" this field descriptor");
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
" for this field descriptor");
}
}
@@ -169,8 +169,9 @@ void map_quadrature_data_to_fields_tensor_impl_1d(
}
else
{
MFEM_ABORT("quadrature data mapping to field is not implemented for"
" this field descriptor with sum factorization on tensor product elements");
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
"for this field descriptor with sum factorization on"
" tensor product elements");
}
}
@@ -306,8 +307,9 @@ void map_quadrature_data_to_fields_tensor_impl_2d(
}
else
{
MFEM_ABORT("quadrature data mapping to field is not implemented for"
" this field descriptor with sum factorization on tensor product elements");
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
" for this field descriptor with sum factorization on"
" tensor product elements");
}
}
@@ -492,8 +494,9 @@ void map_quadrature_data_to_fields_tensor_impl_3d(
}
else
{
MFEM_ABORT("quadrature data mapping to field is not implemented for"
" this field descriptor with sum factorization on tensor product elements");
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
" for this field descriptor with sum factorization on"
" tensor product elements");
}
}
-165
View File
@@ -12,7 +12,6 @@
#include "dgmassinv.hpp"
#include "bilinearform.hpp"
#include "dgmassinv_kernels.hpp"
#include "../general/forall.hpp"
namespace mfem
{
@@ -119,151 +118,6 @@ void DGMassInverse::Update()
DGMassInverse::~DGMassInverse() = default;
template<int DIM, int D1D, int Q1D>
void DGMassInverse::DGMassCGIteration(const Vector &b_, Vector &u_) const
{
using namespace internal; // host/device kernel functions
const int NE = fes.GetNE();
const int d1d = m->dofs1D;
const int q1d = m->quad1D;
const int ND = static_cast<int>(pow(d1d, DIM));
const auto B = m->maps->B.Read();
const auto Bt = m->maps->Bt.Read();
const auto pa_data = m->pa_data.Read();
const auto dinv = diag_inv.Read();
auto r = r_.Write();
auto d = d_.Write();
auto z = z_.Write();
auto u = u_.ReadWrite();
const real_t RELTOL = rel_tol;
const real_t ABSTOL = abs_tol;
const int MAXIT = max_iter;
const bool IT_MODE = iterative_mode;
const bool CHANGE_BASIS = (d2q != nullptr);
// b is the right-hand side (if no change of basis, this just points to the
// incoming RHS vector, if we have to change basis, this points to the
// internal b2 vector where we put the transformed RHS)
const real_t *b;
// the following are non-null if we have to change basis
real_t *b2 = nullptr; // non-const access to b2
const real_t *b_orig = nullptr; // RHS vector in "original" basis
const real_t *d2q_B = nullptr; // matrix to transform initial guess
const real_t *q2d_B = nullptr; // matrix to transform solution
const real_t *q2d_Bt = nullptr; // matrix to transform RHS
if (CHANGE_BASIS)
{
d2q_B = d2q->B.Read();
q2d_B = B_.Read();
q2d_Bt = Bt_.Read();
b2 = b2_.Write();
b_orig = b_.Read();
b = b2;
}
else
{
b = b_.Read();
}
static constexpr int NB = Q1D ? Q1D : 1; // block size
mfem::forall_2D(NE, NB, NB, [=] MFEM_HOST_DEVICE (int e)
{
// Perform change of basis if needed
if (CHANGE_BASIS)
{
// Transform RHS
DGMassBasis<DIM,D1D>(e, NE, q2d_Bt, b_orig, b2, d1d);
if (IT_MODE)
{
// Transform initial guess
DGMassBasis<DIM,D1D>(e, NE, d2q_B, u, u, d1d);
}
}
const int tid = MFEM_THREAD_ID(x) + NB*MFEM_THREAD_ID(y);
// Compute first residual
if (IT_MODE)
{
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, u, r, d1d, q1d);
DGMassAxpy(e, NE, ND, 1.0, b, -1.0, r, r); // r = b - r
}
else
{
// if not in iterative mode, use zero initial guess
const int BX = MFEM_THREAD_SIZE(x);
const int BY = MFEM_THREAD_SIZE(y);
const int bxy = BX*BY;
const auto B = ConstDeviceMatrix(b, ND, NE);
auto U = DeviceMatrix(u, ND, NE);
auto R = DeviceMatrix(r, ND, NE);
for (int i = tid; i < ND; i += bxy)
{
U(i, e) = 0.0;
R(i, e) = B(i, e);
}
MFEM_SYNC_THREAD;
}
DGMassPreconditioner(e, NE, ND, dinv, r, z);
DGMassAxpy(e, NE, ND, 1.0, z, 0.0, z, d); // d = z
real_t nom = DGMassDot<NB>(e, NE, ND, d, r);
if (nom < 0.0) { return; /* Not positive definite */ }
real_t r0 = fmax(nom*RELTOL*RELTOL, ABSTOL*ABSTOL);
if (nom <= r0) { return; /* Converged */ }
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, d, z, d1d, q1d);
real_t den = DGMassDot<NB>(e, NE, ND, z, d);
if (den <= 0.0)
{
DGMassDot<NB>(e, NE, ND, d, d);
// d2 > 0 => not positive definite
if (den == 0.0) { return; }
}
// start iteration
int i = 1;
while (true)
{
const real_t alpha = nom/den;
DGMassAxpy(e, NE, ND, 1.0, u, alpha, d, u); // u = u + alpha*d
DGMassAxpy(e, NE, ND, 1.0, r, -alpha, z, r); // r = r - alpha*A*d
DGMassPreconditioner(e, NE, ND, dinv, r, z);
real_t betanom = DGMassDot<NB>(e, NE, ND, r, z);
if (betanom < 0.0) { return; /* Not positive definite */ }
if (betanom <= r0) { break; /* Converged */ }
if (++i > MAXIT) { break; }
const real_t beta = betanom/nom;
DGMassAxpy(e, NE, ND, 1.0, z, beta, d, d); // d = z + beta*d
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, d, z, d1d, q1d); // z = A d
den = DGMassDot<NB>(e, NE, ND, d, z);
if (den <= 0.0)
{
DGMassDot<NB>(e, NE, ND, d, d);
// d2 > 0 => not positive definite
if (den == 0.0) { break; }
}
nom = betanom;
}
if (CHANGE_BASIS)
{
DGMassBasis<DIM,D1D>(e, NE, q2d_B, u, u, d1d);
}
});
}
void DGMassInverse::Mult(const Vector &Mu, Vector &u) const
{
// Dispatch to templated version based on dim, d1d, and q1d.
@@ -306,23 +160,4 @@ DGMassInvKernels::DGMassInvKernels()
k::Specialization<3,6,7>::Add();
}
/// @cond Suppress_Doxygen_warnings
template <int DIM, int D1D, int Q1D>
DGMassInverse::CGKernelType DGMassInverse::CGKernels::Kernel()
{
return &DGMassInverse::DGMassCGIteration<DIM,D1D,Q1D>;
}
DGMassInverse::CGKernelType DGMassInverse::CGKernels::Fallback(
int dim, int, int)
{
if (dim == 1) { return &DGMassInverse::DGMassCGIteration<1>; }
else if (dim == 2) { return &DGMassInverse::DGMassCGIteration<2>; }
else if (dim == 3) { return &DGMassInverse::DGMassCGIteration<3>; }
else { MFEM_ABORT("Unsupported dimension."); }
}
/// @endcond
} // namespace mfem
+165
View File
@@ -15,6 +15,7 @@
#include "../linalg/kernels.hpp"
#include "kernels.hpp"
#include "integ/bilininteg_mass_kernels.hpp"
#include "dgmassinv.hpp"
namespace mfem
{
@@ -333,6 +334,170 @@ void DGMassBasis(const int e,
} // namespace internal
template<int DIM, int D1D, int Q1D>
void DGMassInverse::DGMassCGIteration(const Vector &b_, Vector &u_) const
{
using namespace internal; // host/device kernel functions
const int NE = fes.GetNE();
const int d1d = m->dofs1D;
const int q1d = m->quad1D;
const int ND = static_cast<int>(pow(d1d, DIM));
const auto B = m->maps->B.Read();
const auto Bt = m->maps->Bt.Read();
const auto pa_data = m->pa_data.Read();
const auto dinv = diag_inv.Read();
auto r = r_.Write();
auto d = d_.Write();
auto z = z_.Write();
auto u = u_.ReadWrite();
const real_t RELTOL = rel_tol;
const real_t ABSTOL = abs_tol;
const int MAXIT = max_iter;
const bool IT_MODE = iterative_mode;
const bool CHANGE_BASIS = (d2q != nullptr);
// b is the right-hand side (if no change of basis, this just points to the
// incoming RHS vector, if we have to change basis, this points to the
// internal b2 vector where we put the transformed RHS)
const real_t *b;
// the following are non-null if we have to change basis
real_t *b2 = nullptr; // non-const access to b2
const real_t *b_orig = nullptr; // RHS vector in "original" basis
const real_t *d2q_B = nullptr; // matrix to transform initial guess
const real_t *q2d_B = nullptr; // matrix to transform solution
const real_t *q2d_Bt = nullptr; // matrix to transform RHS
if (CHANGE_BASIS)
{
d2q_B = d2q->B.Read();
q2d_B = B_.Read();
q2d_Bt = Bt_.Read();
b2 = b2_.Write();
b_orig = b_.Read();
b = b2;
}
else
{
b = b_.Read();
}
static constexpr int NB = Q1D ? Q1D : 1; // block size
mfem::forall_2D<NB*NB>(NE, NB, NB, [=] MFEM_HOST_DEVICE (int e)
{
// Perform change of basis if needed
if (CHANGE_BASIS)
{
// Transform RHS
DGMassBasis<DIM,D1D>(e, NE, q2d_Bt, b_orig, b2, d1d);
if (IT_MODE)
{
// Transform initial guess
DGMassBasis<DIM,D1D>(e, NE, d2q_B, u, u, d1d);
}
}
const int tid = MFEM_THREAD_ID(x) + NB*MFEM_THREAD_ID(y);
// Compute first residual
if (IT_MODE)
{
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, u, r, d1d, q1d);
DGMassAxpy(e, NE, ND, 1.0, b, -1.0, r, r); // r = b - r
}
else
{
// if not in iterative mode, use zero initial guess
const int BX = MFEM_THREAD_SIZE(x);
const int BY = MFEM_THREAD_SIZE(y);
const int bxy = BX*BY;
const auto B = ConstDeviceMatrix(b, ND, NE);
auto U = DeviceMatrix(u, ND, NE);
auto R = DeviceMatrix(r, ND, NE);
for (int i = tid; i < ND; i += bxy)
{
U(i, e) = 0.0;
R(i, e) = B(i, e);
}
MFEM_SYNC_THREAD;
}
DGMassPreconditioner(e, NE, ND, dinv, r, z);
DGMassAxpy(e, NE, ND, 1.0, z, 0.0, z, d); // d = z
real_t nom = DGMassDot<NB>(e, NE, ND, d, r);
if (nom < 0.0) { return; /* Not positive definite */ }
real_t r0 = fmax(nom*RELTOL*RELTOL, ABSTOL*ABSTOL);
if (nom <= r0) { return; /* Converged */ }
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, d, z, d1d, q1d);
real_t den = DGMassDot<NB>(e, NE, ND, z, d);
if (den <= 0.0)
{
DGMassDot<NB>(e, NE, ND, d, d);
// d2 > 0 => not positive definite
if (den == 0.0) { return; }
}
// start iteration
int i = 1;
while (true)
{
const real_t alpha = nom/den;
DGMassAxpy(e, NE, ND, 1.0, u, alpha, d, u); // u = u + alpha*d
DGMassAxpy(e, NE, ND, 1.0, r, -alpha, z, r); // r = r - alpha*A*d
DGMassPreconditioner(e, NE, ND, dinv, r, z);
real_t betanom = DGMassDot<NB>(e, NE, ND, r, z);
if (betanom < 0.0) { return; /* Not positive definite */ }
if (betanom <= r0) { break; /* Converged */ }
if (++i > MAXIT) { break; }
const real_t beta = betanom/nom;
DGMassAxpy(e, NE, ND, 1.0, z, beta, d, d); // d = z + beta*d
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, d, z, d1d, q1d); // z = A d
den = DGMassDot<NB>(e, NE, ND, d, z);
if (den <= 0.0)
{
DGMassDot<NB>(e, NE, ND, d, d);
// d2 > 0 => not positive definite
if (den == 0.0) { break; }
}
nom = betanom;
}
if (CHANGE_BASIS)
{
DGMassBasis<DIM,D1D>(e, NE, q2d_B, u, u, d1d);
}
});
}
/// @cond Suppress_Doxygen_warnings
template <int DIM, int D1D, int Q1D>
inline DGMassInverse::CGKernelType DGMassInverse::CGKernels::Kernel()
{
return &DGMassInverse::DGMassCGIteration<DIM,D1D,Q1D>;
}
inline DGMassInverse::CGKernelType DGMassInverse::CGKernels::Fallback(
int dim, int, int)
{
if (dim == 1) { return &DGMassInverse::DGMassCGIteration<1>; }
else if (dim == 2) { return &DGMassInverse::DGMassCGIteration<2>; }
else if (dim == 3) { return &DGMassInverse::DGMassCGIteration<3>; }
else { MFEM_ABORT("Unsupported dimension."); }
}
/// @endcond
} // namespace mfem
#endif
+6 -6
View File
@@ -320,8 +320,8 @@ public:
error estimation procedure where the flux averaging is replaced by a global
L2 projection (requiring a mass matrix solve).
The required BilinearFormIntegrator must implement the methods
ComputeElementFlux() and ComputeFluxEnergy().
The required BilinearFormIntegrator must implement the method
ComputeElementFlux().
Implemented for the parallel case only.
*/
@@ -357,8 +357,8 @@ protected:
public:
/** @brief Construct a new L2ZienkiewiczZhuEstimator object.
@param integ This BilinearFormIntegrator must implement the methods
ComputeElementFlux() and ComputeFluxEnergy().
@param integ This BilinearFormIntegrator must implement the method
ComputeElementFlux().
@param sol The solution field whose error is to be estimated.
@param flux_fes The L2ZienkiewiczZhuEstimator assumes ownership of this
FiniteElementSpace and will call its Update() method when
@@ -382,8 +382,8 @@ public:
{ }
/** @brief Construct a new L2ZienkiewiczZhuEstimator object.
@param integ This BilinearFormIntegrator must implement the methods
ComputeElementFlux() and ComputeFluxEnergy().
@param integ This BilinearFormIntegrator must implement the method
ComputeElementFlux().
@param sol The solution field whose error is to be estimated.
@param flux_fes The L2ZienkiewiczZhuEstimator does NOT assume ownership
of this FiniteElementSpace; will call its Update() method
+3 -3
View File
@@ -69,9 +69,9 @@ inline int ToLexOrdering2D(const int face_id, const int size1d, const int i)
}
/// @brief Given a face DOF index on a shared face, ordered lexicographically
/// relative to element the element (where the local face is face_id), and
/// return the corresponding face DOF index ordered lexicographically relative
/// to the face itself.
/// relative to the element (where the local face is face_id), return the
/// corresponding face DOF index ordered lexicographically relative to the face
/// itself.
MFEM_HOST_DEVICE
inline int PermuteFace2D(const int face_id, const int orientation,
const int size1d, const int index)
+137 -71
View File
@@ -231,7 +231,7 @@ void FiniteElement::CalcPhysLaplacian(ElementTransformation &Trans,
{
for (int nd = 0; nd < dof; nd++)
{
Laplacian[nd] = hess(nd,0) + hess(nd,4) + hess(nd,5);
Laplacian[nd] = hess(nd,0) + hess(nd,3) + hess(nd,5);
}
}
else if (dim == 2)
@@ -268,11 +268,9 @@ void FiniteElement::CalcPhysLinLaplacian(ElementTransformation &Trans,
scale[0] = Gij(0,0);
scale[1] = 2*Gij(0,1);
scale[2] = 2*Gij(0,2);
scale[3] = 2*Gij(1,2);
scale[4] = Gij(2,2);
scale[5] = Gij(1,1);
scale[3] = Gij(1,1);
scale[4] = 2*Gij(1,2);
scale[5] = Gij(2,2);
}
else if (dim == 2)
{
@@ -309,12 +307,12 @@ void FiniteElement::CalcPhysHessian(ElementTransformation &Trans,
map[2] = 2;
map[3] = 1;
map[4] = 5;
map[5] = 3;
map[4] = 3;
map[5] = 4;
map[6] = 2;
map[7] = 3;
map[8] = 4;
map[7] = 4;
map[8] = 5;
}
else if (dim == 2)
{
@@ -382,11 +380,7 @@ const DofToQuad &FiniteElement::GetDofToQuad(const IntegrationRule &ir,
#pragma omp critical (DofToQuad)
#endif
{
for (int i = 0; i < dof2quad_array.Size(); i++)
{
d2q = dof2quad_array[i];
if (d2q->IntRule != &ir || d2q->mode != mode) { d2q = nullptr; }
}
d2q = DofToQuad::SearchArray(dof2quad_array, ir, mode);
if (!d2q)
{
#ifdef MFEM_THREAD_SAFE
@@ -661,58 +655,67 @@ void ScalarFiniteElement::ScalarLocalL2Restriction(
void NodalFiniteElement::CreateLexicographicFullMap(const IntegrationRule &ir)
const
{
// Get the FULL version of the map. This call contains omp critical region,
// so it is done before the critical region below.
auto &d2q = GetDofToQuad(ir, DofToQuad::FULL);
#if defined(MFEM_THREAD_SAFE) && defined(MFEM_USE_OPENMP)
#pragma omp critical (DofToQuad)
#endif
{
// Get the FULL version of the map.
auto &d2q = GetDofToQuad(ir, DofToQuad::FULL);
//Undo the native ordering which is what FiniteElement::GetDofToQuad returns.
auto *d2q_new = new DofToQuad(d2q);
d2q_new->mode = DofToQuad::LEXICOGRAPHIC_FULL;
const int nqpt = ir.GetNPoints();
const int b_dim = (range_type == VECTOR) ? dim : 1;
for (int i = 0; i < nqpt; i++)
// Do not run if the new Dof2Quad is already present, e.g. added in a
// previous call or added by another omp thread.
if (DofToQuad::SearchArray(dof2quad_array, ir,
DofToQuad::LEXICOGRAPHIC_FULL) == nullptr)
{
for (int d = 0; d < b_dim; d++)
// Undo the native ordering which is what FiniteElement::GetDofToQuad
// returns.
auto *d2q_new = new DofToQuad(d2q);
d2q_new->mode = DofToQuad::LEXICOGRAPHIC_FULL;
const int nqpt = ir.GetNPoints();
const int b_dim = (range_type == VECTOR) ? dim : 1;
for (int i = 0; i < nqpt; i++)
{
for (int j = 0; j < dof; j++)
for (int d = 0; d < b_dim; d++)
{
const double val = d2q.B[i + nqpt*(d+b_dim*lex_ordering[j])];
d2q_new->B[i+nqpt*(d+b_dim*j)] = val;
d2q_new->Bt[j+dof*(i+nqpt*d)] = val;
for (int j = 0; j < dof; j++)
{
const double val = d2q.B[i + nqpt*(d+b_dim*lex_ordering[j])];
d2q_new->B[i+nqpt*(d+b_dim*j)] = val;
d2q_new->Bt[j+dof*(i+nqpt*d)] = val;
}
}
}
}
const int g_dim = [this]()
{
switch (deriv_type)
const int g_dim = [this]()
{
case GRAD: return dim;
case DIV: return 1;
case CURL: return cdim;
default: return 0;
}
}();
for (int i = 0; i < nqpt; i++)
{
for (int d = 0; d < g_dim; d++)
{
for (int j = 0; j < dof; j++)
switch (deriv_type)
{
const double val = d2q.G[i + nqpt*(d+g_dim*lex_ordering[j])];
d2q_new->G[i+nqpt*(d+g_dim*j)] = val;
d2q_new->Gt[j+dof*(i+nqpt*d)] = val;
case GRAD: return dim;
case DIV: return 1;
case CURL: return cdim;
default: return 0;
}
}();
for (int i = 0; i < nqpt; i++)
{
for (int d = 0; d < g_dim; d++)
{
for (int j = 0; j < dof; j++)
{
const double val = d2q.G[i + nqpt*(d+g_dim*lex_ordering[j])];
d2q_new->G[i+nqpt*(d+g_dim*j)] = val;
d2q_new->Gt[j+dof*(i+nqpt*d)] = val;
}
}
}
dof2quad_array.Append(d2q_new);
}
dof2quad_array.Append(d2q_new);
}
}
@@ -724,13 +727,7 @@ const DofToQuad &NodalFiniteElement::GetDofToQuad(const IntegrationRule &ir,
#pragma omp critical (DofToQuad)
#endif
{
//Should make this loop a function of FiniteElement
for (int i = 0; i < dof2quad_array.Size(); i++)
{
d2q = dof2quad_array[i];
if (d2q->IntRule == &ir && d2q->mode == mode) { break; }
d2q = nullptr;
}
d2q = DofToQuad::SearchArray(dof2quad_array, ir, mode);
}
if (d2q) { return *d2q; }
if (mode != DofToQuad::LEXICOGRAPHIC_FULL)
@@ -1047,9 +1044,50 @@ void VectorFiniteElement::SetDerivMembers()
switch (map_type)
{
case H_DIV:
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
switch (dim)
{
case 3: // div: 3D H_DIV -> 3D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
case 2: // div: 2D H_DIV -> 2D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_DIV_R2D:
switch (dim)
{
case 2: // div: 2D H_DIV_R2D -> 2D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
case 1: // div: 1D H_DIV_R2D -> 1D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_DIV_R1D:
switch (dim)
{
case 1: // div: 1D H_DIV_R1D -> 1D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_CURL:
switch (dim)
@@ -1067,13 +1105,49 @@ void VectorFiniteElement::SetDerivMembers()
break;
case 1:
deriv_type = NONE;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
deriv_range_type = UNKNOWN_RANGE_TYPE;
deriv_map_type = UNKNOWN_MAP_TYPE;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_CURL_R2D:
switch (dim)
{
case 2:
// curl: 2D H_CURL_R2D -> H_DIV_R2D
deriv_type = CURL;
deriv_range_type = VECTOR;
deriv_map_type = H_DIV_R2D;
break;
case 1:
// curl: 1D H_CURL_R2D -> H_DIV_R2D
deriv_type = CURL;
deriv_range_type = VECTOR;
deriv_map_type = H_DIV_R2D;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_CURL_R1D:
switch (dim)
{
case 1:
// curl: 1D H_CURL_R1D -> H_DIV_R1D
deriv_type = CURL;
deriv_range_type = VECTOR;
deriv_map_type = H_DIV_R1D;
break;
case 0:
deriv_type = NONE;
deriv_range_type = UNKNOWN_RANGE_TYPE;
deriv_map_type = UNKNOWN_MAP_TYPE;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
default:
MFEM_ABORT("Invalid MapType = " << map_type);
}
@@ -2631,15 +2705,7 @@ const DofToQuad &TensorBasisElement::GetTensorDofToQuad(
#pragma omp critical (DofToQuad)
#endif
{
for (int i = 0; i < dof2quad_array.Size(); i++)
{
auto* d2q_ = dof2quad_array[i];
if (d2q_->IntRule == &ir && d2q_->mode == mode)
{
d2q = d2q_;
break;
}
}
d2q = DofToQuad::SearchArray(dof2quad_array, ir, mode);
if (!d2q)
{
d2q = new DofToQuad;
+56 -6
View File
@@ -44,7 +44,7 @@ public:
NumBasisTypes = 9 /**< Keep track of maximum types to prevent
hard-coding */
};
/** @brief If the input does not represents a valid BasisType, abort with an
/** @brief If the input does not represent a valid BasisType, abort with an
error; otherwise return the input. */
static int Check(int b_type)
{
@@ -52,7 +52,7 @@ public:
"unknown BasisType: " << b_type);
return b_type;
}
/** @brief If the input does not represents a valid nodal BasisType, abort
/** @brief If the input does not represent a valid nodal BasisType, abort
with an error; otherwise return the input. */
static int CheckNodal(int b_type)
{
@@ -222,6 +222,12 @@ public:
/// Returns absolute value of the maps
DofToQuad Abs() const;
/// Auxiliary function for searching DofToQuad arrays.
static inline DofToQuad *SearchArray(
const Array<DofToQuad*> &dof2quad_array,
const IntegrationRule &ir,
DofToQuad::Mode mode);
};
/// Describes the function space on each element
@@ -289,10 +295,20 @@ public:
$ u(x) = (1/w) \hat u(\hat x) $ */
H_DIV, /**< For vector fields; preserves surface integrals of the
normal component $ u(x) = (J/w) \hat u(\hat x) $ */
H_CURL /**< For vector fields; preserves line integrals of the
H_CURL, /**< For vector fields; preserves line integrals of the
tangential component
$ u(x) = J^{-t} \hat u(\hat x) $ (square J),
$ u(x) = J(J^t J)^{-1} \hat u(\hat x) $ (general J) */
H_DIV_R2D, /**< For 3-component vector fields in 2D; equivalent to a
direct sum of an H_DIV basis and an INTEGRAL basis */
H_CURL_R2D,/**< For 3-component vector fields in 2D; equivalent to a
direct sum of an H_CURL basis and a VALUE basis */
H_DIV_R1D, /**< For 3-component vector fields in 1D; equivalent to a
direct sum of a VALUE basis and a pair of INTEGRAL
bases */
H_CURL_R1D /**< For 3-component vector fields in 1D; equivalent to a
direct sum of an INTEGRAL basis and a pair of VALUE
bases */
};
/** @brief Enumeration for DerivType: defines which derivative method
@@ -324,12 +340,28 @@ public:
int GetDim() const { return dim; }
/** @brief Returns the vector dimension for vector-valued finite elements,
which is also the dimension of the interpolation operation. */
which is also the dimension of the interpolation operation and the
width of the DenseMatrix argument in
CalcVShape(const IntegrationPoint &ip, DenseMatrix &shape). */
int GetRangeDim() const { return vdim; }
/// Returns the dimension of the curl for vector-valued finite elements.
/** @brief Returns the vector dimension, in physical space, for
vector-valued finite elements, which is also the width of the
DenseMatrix argument in
CalcPhysVShape(ElementTransformation &Trans, DenseMatrix &shape). */
virtual int GetPhysRangeDim(int /* space_dim */) const { return vdim; }
/** Returns the dimension of the curl for vector-valued finite elements,
which is also the width of the DenseMatrix argument in
CalcCurlShape(const IntegrationPoint &ip, DenseMatrix &curl_shape). */
int GetCurlDim() const { return cdim; }
/** Returns the dimension, in physical space, of the curl for vector-valued
finite elements, which is also the width of the DenseMatrix argument in
CalcPhysCurlShape(ElementTransformation &Trans, DenseMatrix &curl_shape).
*/
virtual int GetPhysCurlDim(int /* space_dim */) const { return cdim; }
/// Returns the Geometry::Type of the reference element.
Geometry::Type GetGeomType() const { return geom_type; }
@@ -407,6 +439,7 @@ public:
/** Each row of the result DenseMatrix @a Hessian contains upper triangular
part of the Hessian of one shape function.
The order in 2D is {u_xx, u_xy, u_yy}.
The order in 3D is {u_xx, u_xy, u_xz, u_yy, u_yz, u_zz}.
The size (#dof x (#dim (#dim+1)/2) of @a Hessian must be set in advance.*/
virtual void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &Hessian) const;
@@ -983,6 +1016,8 @@ protected:
public:
VectorFiniteElement(int D, Geometry::Type G, int Do, int O, int M,
int F = FunctionSpace::Pk);
int GetPhysRangeDim(int space_dim) const override { return space_dim; }
};
/// @brief Class for computing 1D special polynomials and their associated basis
@@ -1120,7 +1155,7 @@ public:
return GetPoints(p, btype, on_device);
}
/// Get coordinates of a closed (GaussLegendre) set of points if degree @a p
/// Get coordinates of a closed (GaussLobatto) set of points if degree @a p
const real_t *ClosedPoints(const int p,
const int btype = BasisType::GaussLobatto,
bool on_device = false)
@@ -1376,6 +1411,21 @@ public:
void InvertLinearTrans(ElementTransformation &trans,
const IntegrationPoint &pt, Vector &x);
// static inline method
inline DofToQuad *DofToQuad::SearchArray(
const Array<DofToQuad*> &dof2quad_array,
const IntegrationRule &ir,
DofToQuad::Mode mode)
{
for (int i = 0; i < dof2quad_array.Size(); i++)
{
DofToQuad *d2q = dof2quad_array[i];
if (d2q->IntRule == &ir && d2q->mode == mode) { return d2q; }
}
return nullptr;
}
} // namespace mfem
#endif
+48
View File
@@ -60,6 +60,12 @@ void Linear1DFiniteElement::CalcDShape(const IntegrationPoint &ip,
dshape(1,0) = 1.;
}
void Linear1DFiniteElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const
{
h = 0.0;
}
Linear2DFiniteElement::Linear2DFiniteElement()
: NodalFiniteElement(2, Geometry::TRIANGLE, 3, 1)
{
@@ -87,6 +93,11 @@ void Linear2DFiniteElement::CalcDShape(const IntegrationPoint &ip,
dshape(2,0) = 0.; dshape(2,1) = 1.;
}
void Linear2DFiniteElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const
{
h = 0.0;
}
BiLinear2DFiniteElement::BiLinear2DFiniteElement()
: NodalFiniteElement(2, Geometry::SQUARE, 4, 1, FunctionSpace::Qk)
@@ -1256,6 +1267,12 @@ void Linear3DFiniteElement::CalcDShape(const IntegrationPoint &ip,
}
}
void Linear3DFiniteElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const
{
h = 0.0;
}
void Linear3DFiniteElement::GetFaceDofs (int face, int **dofs, int *ndofs)
const
{
@@ -1632,6 +1649,37 @@ void TriLinear3DFiniteElement::CalcDShape(const IntegrationPoint &ip,
dshape(7,2) = ox * y;
}
void TriLinear3DFiniteElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const
{
real_t x = ip.x, y = ip.y, z = ip.z;
real_t ox = 1.-x, oy = 1.-y, oz = 1.-z;
h(0,0) = 0.; h(0,1) = oz; h(0,2) = oy;
h(0,3) = 0.; h(0,4) = ox; h(0,5) = 0.;
h(1,0) = 0.; h(1,1) = -oz; h(1,2) = -oy;
h(1,3) = 0.; h(1,4) = x; h(1,5) = 0.;
h(2,0) = 0.; h(2,1) = oz; h(2,2) = -y;
h(2,3) = 0.; h(2,4) = -x; h(2,5) = 0.;
h(3,0) = 0.; h(3,1) = -oz; h(3,2) = y;
h(3,3) = 0.; h(3,4) = -ox; h(3,5) = 0.;
h(4,0) = 0.; h(4,1) = z; h(4,2) = -oy;
h(4,3) = 0.; h(4,4) = -ox; h(4,5) = 0.;
h(5,0) = 0.; h(5,1) = -z; h(5,2) = oy;
h(5,3) = 0.; h(5,4) = -x; h(5,5) = 0.;
h(6,0) = 0.; h(6,1) = z; h(6,2) = y;
h(6,3) = 0.; h(6,4) = x; h(6,5) = 0.;
h(7,0) = 0.; h(7,1) = -z; h(7,2) = -y;
h(7,3) = 0.; h(7,4) = ox; h(7,5) = 0.;
}
P0SegmentFiniteElement::P0SegmentFiniteElement(int Ord)
: NodalFiniteElement(1, Geometry::SEGMENT, 1, Ord) // default Ord = 0
+9 -1
View File
@@ -50,6 +50,8 @@ public:
contains the derivative of one shape function */
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const override;
};
/// A 2D linear element on triangle with nodes at the vertices of the triangle
@@ -70,6 +72,8 @@ public:
so that each row contains the derivatives of one shape function */
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const override;
void ProjectDelta(int vertex, Vector &dofs) const override
{ dofs = 0.0; dofs(vertex) = 1.0; }
};
@@ -404,6 +408,9 @@ public:
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const override;
void ProjectDelta(int vertex, Vector &dofs) const override
{ dofs = 0.0; dofs(vertex) = 1.0; }
@@ -445,7 +452,8 @@ public:
so that each row contains the derivatives of one shape function */
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const override;
void ProjectDelta(int vertex, Vector &dofs) const override
{ dofs = 0.0; dofs(vertex) = 1.0; }
};
+1 -1
View File
@@ -589,7 +589,7 @@ void H1_TriangleElement::CalcHessian(const IntegrationPoint &ip,
Vector shape_x(p + 1), shape_y(p + 1), shape_l(p + 1);
Vector dshape_x(p + 1), dshape_y(p + 1), dshape_l(p + 1);
Vector ddshape_x(p + 1), ddshape_y(p + 1), ddshape_l(p + 1);
DenseMatrix ddu(dof, dim);
DenseMatrix ddu(dof, (dim*(dim+1))/2);
#endif
poly1d.CalcBasis(p, ip.x, shape_x, dshape_x, ddshape_x);
+4 -4
View File
@@ -2531,7 +2531,7 @@ void ND_FuentesPyramidElement::calcCurlBasis(const int p,
ND_R1D_PointElement::ND_R1D_PointElement(int p)
: VectorFiniteElement(1, Geometry::POINT, 2, p,
H_CURL, FunctionSpace::Pk)
H_CURL_R1D, FunctionSpace::Pk)
{
// VectorFiniteElement::SetDerivMembers doesn't support 0D H_CURL elements
// so we mimic a 1D element and then correct the dimension here.
@@ -2562,7 +2562,7 @@ ND_R1D_SegmentElement::ND_R1D_SegmentElement(const int p,
const int cb_type,
const int ob_type)
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 2, p,
H_CURL, FunctionSpace::Pk),
H_CURL_R1D, FunctionSpace::Pk),
dof2tk(dof),
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
@@ -2839,7 +2839,7 @@ ND_R2D_SegmentElement::ND_R2D_SegmentElement(const int p,
const int cb_type,
const int ob_type)
: VectorFiniteElement(1, Geometry::SEGMENT, 2 * p + 1, p,
H_CURL, FunctionSpace::Pk),
H_CURL_R2D, FunctionSpace::Pk),
dof2tk(dof),
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
@@ -3023,7 +3023,7 @@ void ND_R2D_SegmentElement::Project(VectorCoefficient &vc,
ND_R2D_FiniteElement::ND_R2D_FiniteElement(int p, Geometry::Type G, int Do,
const real_t *tk_fe)
: VectorFiniteElement(2, G, Do, p,
H_CURL, FunctionSpace::Pk),
H_CURL_R2D, FunctionSpace::Pk),
tk(tk_fe),
dof_map(dof),
dof2tk(dof)
+6
View File
@@ -663,6 +663,9 @@ public:
const int cb_type = BasisType::GaussLobatto,
const int ob_type = BasisType::GaussLegendre);
int GetPhysRangeDim(int space_dim) const override { return 2; }
int GetPhysCurlDim(int space_dim) const override { return 1; }
void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const override;
@@ -705,6 +708,9 @@ private:
DenseMatrix &I) const;
public:
int GetPhysRangeDim(int space_dim) const override { return 3; }
int GetPhysCurlDim(int space_dim) const override { return 3; }
using FiniteElement::CalcVShape;
using FiniteElement::CalcPhysCurlShape;
+519 -5
View File
@@ -84,6 +84,46 @@ void NURBS1DFiniteElement::CalcHessian (const IntegrationPoint &ip,
add(1.0, hess, (-d2sum + 2*dsum*dsum*sum)*sum*sum, shape_x, hess);
}
void NURBS1DFiniteElement::Project(Coefficient &coeff,
ElementTransformation &Trans,
Vector &dofs) const
{
IntegrationPoint ip;
for (int i = 0; i <= order; i++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+order)) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+order);
Trans.SetIntPoint(&ip);
dofs(i) = coeff.Eval(Trans, ip);
}
}
void NURBS1DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == vc.GetVDim()*dof, "");
Vector x(vc.GetVDim());
IntegrationPoint ip;
for (int i = 0; i <= order; i++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+order)) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+order);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
for (int j = 0; j < x.Size(); j++)
{
dofs(dof*j+i) = x(j);
}
}
}
void NURBS2DFiniteElement::SetOrder() const
{
@@ -215,6 +255,63 @@ void NURBS2DFiniteElement::CalcHessian (const IntegrationPoint &ip,
}
}
void NURBS2DFiniteElement::Project(Coefficient &coeff,
ElementTransformation &Trans,
Vector &dofs) const
{
IntegrationPoint ip;
for (int o = 0, j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 1;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
dofs(o) = coeff.Eval(Trans, ip);
}
}
}
void NURBS2DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == vc.GetVDim()*dof, "");
Vector x(vc.GetVDim());
IntegrationPoint ip;
for (int o = 0, j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 1;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
for (int v = 0; v < x.Size(); v++)
{
dofs(dof*v+o) = x(v);
}
}
}
}
void NURBS3DFiniteElement::SetOrder() const
{
@@ -348,11 +445,10 @@ void NURBS3DFiniteElement::CalcHessian (const IntegrationPoint &ip,
d2sum[0] += ( hessian(o,0) = d2sx*sy*sz*weights(o) );
d2sum[1] += ( hessian(o,1) = dsx*dsy*sz*weights(o) );
d2sum[2] += ( hessian(o,2) = dsx*sy*dsz*weights(o) );
d2sum[3] += ( hessian(o,3) = sx*d2sy*sz*weights(o) );
d2sum[4] += ( hessian(o,4) = sx*dsy*dsz*weights(o) );
d2sum[5] += ( hessian(o,5) = sx*sy*d2sz*weights(o) );
d2sum[3] += ( hessian(o,3) = sx*dsy*dsz*weights(o) );
d2sum[4] += ( hessian(o,4) = sx*sy*d2sz*weights(o) );
d2sum[5] += ( hessian(o,5) = sx*d2sy*sz*weights(o) );
}
}
}
@@ -401,6 +497,85 @@ void NURBS3DFiniteElement::CalcHessian (const IntegrationPoint &ip,
}
}
void NURBS3DFiniteElement::Project(Coefficient &coeff,
ElementTransformation &Trans,
Vector &dofs) const
{
IntegrationPoint ip;
for (int o = 0, k = 0; k <= orders[2]; k++)
{
real_t kz = kv[2]->GetBotella(ijk[2] + k);
if (!kv[2]->inSpan(kz, ijk[2]+orders[2]))
{
o += (orders[0] + 1)*(orders[1] + 1);
continue;
}
ip.z = kv[2]->GetRefPoint(kz, ijk[2]+orders[2]);
for (int j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 1;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
dofs(o) = coeff.Eval(Trans, ip);
}
}
}
}
void NURBS3DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == vc.GetVDim()*dof, "");
Vector x(vc.GetVDim());
IntegrationPoint ip;
for (int o = 0, k = 0; k <= orders[2]; k++)
{
real_t kz = kv[2]->GetBotella(ijk[2] + k);
if (!kv[2]->inSpan(kz, ijk[2]+orders[2]))
{
o += (orders[0] + 1)*(orders[1] + 1);
continue;
}
ip.z = kv[2]->GetRefPoint(kz, ijk[2]+orders[2]);
for (int j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 1;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
for (int v = 0; v < x.Size(); v++)
{
dofs(dof*v+o) = x(v);
}
}
}
}
}
void NURBS_HDiv2DFiniteElement::SetOrder() const
{
@@ -517,6 +692,63 @@ void NURBS_HDiv2DFiniteElement::CalcDivShape(const IntegrationPoint &ip,
}
}
void NURBS_HDiv2DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == dof, "");
MFEM_ASSERT(vc.GetVDim() == 2, "");
Vector x(2), mx(2);
IntegrationPoint ip;
int o = 0;
for (int j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 2;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]+1; i++, o++)
{
real_t kx = kv1[0]->GetBotella(ijk[0] + i);
if (!kv1[0]->inSpan(kx, ijk[0]+orders[0]+1)) { continue; }
ip.x = kv1[0]->GetRefPoint(kx, ijk[0]+orders[0]+1);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.AdjugateJacobian().Mult(x,mx);
dofs(o) = mx(0);
}
}
for (int j = 0; j <= orders[1]+1; j++)
{
real_t ky = kv1[1]->GetBotella(ijk[1] + j);
if (!kv1[1]->inSpan(ky, ijk[1]+orders[1]+1))
{
o += orders[0] + 1;
continue;
}
ip.y = kv1[1]->GetRefPoint(ky, ijk[1]+orders[1]+1);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.AdjugateJacobian().Mult(x,mx);
dofs(o) = mx(1);
}
}
}
NURBS_HDiv2DFiniteElement::~NURBS_HDiv2DFiniteElement()
{
if (kv1[0]) { delete kv1[0]; }
@@ -696,6 +928,120 @@ void NURBS_HDiv3DFiniteElement::CalcDivShape(const IntegrationPoint &ip,
}
}
void NURBS_HDiv3DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == dof, "");
MFEM_ASSERT(vc.GetVDim() == 3, "");
Vector x(2), mx(3);
IntegrationPoint ip;
int o = 0;
for (int k = 0; k <= orders[2]; k++)
{
real_t kz = kv[2]->GetBotella(ijk[2] + k);
if (!kv[2]->inSpan(kz, ijk[2]+orders[2]))
{
o += (orders[0] + 2)*(orders[1] + 1);
continue;
}
ip.z = kv[2]->GetRefPoint(kz, ijk[2]+orders[2]);
for (int j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 2;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]+1; i++, o++)
{
real_t kx = kv1[0]->GetBotella(ijk[0] + i);
if (!kv1[0]->inSpan(kx, ijk[0]+orders[0]+1)) { continue; }
ip.x = kv1[0]->GetRefPoint(kx, ijk[0]+orders[0]+1);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.AdjugateJacobian().Mult(x,mx);
dofs(o) = mx(0);
}
}
}
for (int k = 0; k <= orders[2]; k++)
{
real_t kz = kv[2]->GetBotella(ijk[2] + k);
if (!kv[2]->inSpan(kz, ijk[2]+orders[2]))
{
o += (orders[0] + 1)*(orders[1] + 2);
continue;
}
ip.z = kv[2]->GetRefPoint(kz, ijk[2]+orders[2]);
for (int j = 0; j <= orders[1]+1; j++)
{
real_t ky = kv1[1]->GetBotella(ijk[1] + j);
if (!kv1[1]->inSpan(ky, ijk[1]+orders[1]+1))
{
o += orders[0] + 1;
continue;
}
ip.y = kv1[1]->GetRefPoint(ky, ijk[1]+orders[1]+1);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.AdjugateJacobian().Mult(x,mx);
dofs(o) = mx(1);
}
}
}
for (int k = 0; k <= orders[2]+1; k++)
{
real_t kz = kv1[2]->GetBotella(ijk[2] + k);
if (!kv1[2]->inSpan(kz, ijk[2]+orders[2]+1))
{
o += (orders[0] + 1)*(orders[1] + 1);
continue;
}
ip.z = kv1[2]->GetRefPoint(kz, ijk[2]+orders[2]+1);
for (int j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 1;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.AdjugateJacobian().Mult(x,mx);
dofs(o) = mx(2);
}
}
}
}
NURBS_HDiv3DFiniteElement::~NURBS_HDiv3DFiniteElement()
{
if (kv1[0]) { delete kv1[0]; }
@@ -817,13 +1163,68 @@ void NURBS_HCurl2DFiniteElement::CalcCurlShape(const IntegrationPoint &ip,
}
}
void NURBS_HCurl2DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == dof, "");
MFEM_ASSERT(vc.GetVDim() == 2, "");
Vector x(2), xm(2);
IntegrationPoint ip;
int i, j, o;
for (o = 0, j = 0; j <= orders[1]+1; j++)
{
real_t ky = kv1[1]->GetBotella(ijk[1] + j);
if (!kv1[1]->inSpan(ky, ijk[1]+orders[1]+1))
{
o += orders[0] + 1;
continue;
}
ip.y = kv1[1]->GetRefPoint(ky, ijk[1]+orders[1]+1);
for (i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.Jacobian().MultTranspose(x,xm);
dofs(o) = xm(0);
}
}
for (j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 2;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (i = 0; i <= orders[0]+1; i++, o++)
{
real_t kx = kv1[0]->GetBotella(ijk[0] + i);
if (!kv1[0]->inSpan(kx, ijk[0]+orders[0]+1)) { continue; }
ip.x = kv1[0]->GetRefPoint(kx, ijk[0]+orders[0]+1);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.Jacobian().MultTranspose(x,xm);
dofs(o) = xm(1);
}
}
}
NURBS_HCurl2DFiniteElement::~NURBS_HCurl2DFiniteElement()
{
if (kv1[0]) { delete kv1[0]; }
if (kv1[1]) { delete kv1[1]; }
}
void NURBS_HCurl3DFiniteElement::SetOrder() const
{
orders[0] = kv[0]->GetOrder();
@@ -1003,11 +1404,124 @@ void NURBS_HCurl3DFiniteElement::CalcCurlShape(const IntegrationPoint &ip,
curl_shape(o,0) = shape1_x(i)*dsy1_sz;
curl_shape(o,1) = -dshape1_x(i)*sy1_sz;
curl_shape(o,2) = 0.0;
}
}
}
}
void NURBS_HCurl3DFiniteElement::Project(VectorCoefficient &vc,
ElementTransformation &Trans,
Vector &dofs) const
{
MFEM_ASSERT(dofs.Size() == dof, "");
MFEM_ASSERT(vc.GetVDim() == 3, "");
Vector x(3), xm(3);
IntegrationPoint ip;
int o = 0;
for (int k = 0; k <= orders[2]+1; k++)
{
real_t kz = kv1[2]->GetBotella(ijk[2] + k);
if (!kv1[2]->inSpan(kz, ijk[2]+orders[2]+1))
{
o += (orders[0] + 1)*(orders[1] + 2);
continue;
}
ip.z = kv1[2]->GetRefPoint(kz, ijk[2]+orders[2]+1);
for (int j = 0; j <= orders[1]+1; j++)
{
real_t ky = kv1[1]->GetBotella(ijk[1] + j);
if (!kv1[1]->inSpan(ky, ijk[1]+orders[1]+1))
{
o += orders[0] + 1;
continue;
}
ip.y = kv1[1]->GetRefPoint(ky, ijk[1]+orders[1]+1);
for (int i = 0; i <= orders[0]; i++, o++)
{
real_t kx = kv[0]->GetBotella(ijk[0] + i);
if (!kv[0]->inSpan(kx, ijk[0]+orders[0])) { continue; }
ip.x = kv[0]->GetRefPoint(kx, ijk[0]+orders[0]);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.Jacobian().MultTranspose(x,xm);
dofs(o) = xm(0);
}
}
}
for (int k = 0; k <= orders[2]+1; k++)
{
real_t kz = kv1[2]->GetBotella(ijk[2] + k);
if (!kv1[2]->inSpan(kz, ijk[2]+orders[2]+1))
{
o += (orders[0] + 2)*(orders[1] + 1);
continue;
}
ip.z = kv1[2]->GetRefPoint(kz, ijk[2]+orders[2]+1);
for (int j = 0; j <= orders[1]; j++)
{
real_t ky = kv[1]->GetBotella(ijk[1] + j);
if (!kv[1]->inSpan(ky, ijk[1]+orders[1]))
{
o += orders[0] + 2;
continue;
}
ip.y = kv[1]->GetRefPoint(ky, ijk[1]+orders[1]);
for (int i = 0; i <= orders[0]+1; i++, o++)
{
real_t kx = kv1[0]->GetBotella(ijk[0] + i);
if (!kv1[0]->inSpan(kx, ijk[0]+orders[0]+1)) { continue; }
ip.x = kv1[0]->GetRefPoint(kx, ijk[0]+orders[0]+1);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.Jacobian().MultTranspose(x,xm);
dofs(o) = xm(1);
}
}
}
for (int k = 0; k <= orders[2]; k++)
{
real_t kz = kv[2]->GetBotella(ijk[2] + k);
if (!kv[2]->inSpan(kz, ijk[2]+orders[2]))
{
o += (orders[0] + 2)*(orders[1] + 2);
continue;
}
ip.z = kv[2]->GetRefPoint(kz, ijk[2]+orders[2]);
for (int j = 0; j <= orders[1]+1; j++)
{
real_t ky = kv1[1]->GetBotella(ijk[1] + j);
if (!kv1[1]->inSpan(ky, ijk[1]+orders[1]+1))
{
o += orders[0] + 2;
continue;
}
ip.y = kv1[1]->GetRefPoint(ky, ijk[1]+orders[1]+1);
for (int i = 0; i <= orders[0]+1; i++, o++)
{
real_t kx = kv1[0]->GetBotella(ijk[0] + i);
if (!kv1[0]->inSpan(kx, ijk[0]+orders[0]+1)) { continue; }
ip.x = kv1[0]->GetRefPoint(kx, ijk[0]+orders[0]+1);
Trans.SetIntPoint(&ip);
vc.Eval(x, Trans, ip);
Trans.Jacobian().MultTranspose(x,xm);
dofs(o) = xm(2);
}
}
}
}
NURBS_HCurl3DFiniteElement::~NURBS_HCurl3DFiniteElement()
{
if (kv1[0]) { delete kv1[0]; }
+64
View File
@@ -86,6 +86,18 @@ public:
DenseMatrix &dshape) const override;
void CalcHessian (const IntegrationPoint &ip,
DenseMatrix &hessian) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(Coefficient &coeff,
ElementTransformation &Trans, Vector &dofs) const override;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
};
/// An arbitrary order 2D NURBS element on a square
@@ -121,6 +133,18 @@ public:
DenseMatrix &dshape) const override;
void CalcHessian (const IntegrationPoint &ip,
DenseMatrix &hessian) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(Coefficient &coeff,
ElementTransformation &Trans, Vector &dofs) const override;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
};
/// An arbitrary order 3D NURBS element on a cube
@@ -161,6 +185,18 @@ public:
DenseMatrix &dshape) const override;
void CalcHessian (const IntegrationPoint &ip,
DenseMatrix &hessian) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(Coefficient &coeff,
ElementTransformation &Trans, Vector &dofs) const override;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
};
@@ -242,6 +278,13 @@ public:
void CalcDivShape(const IntegrationPoint &ip,
Vector &divshape) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
~NURBS_HDiv2DFiniteElement();
};
@@ -336,6 +379,13 @@ public:
void CalcDivShape(const IntegrationPoint &ip,
Vector &divshape) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
~NURBS_HDiv3DFiniteElement();
};
@@ -415,6 +465,13 @@ public:
void CalcCurlShape(const IntegrationPoint &ip,
DenseMatrix &curl_shape) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
~NURBS_HCurl2DFiniteElement();
};
@@ -506,6 +563,13 @@ public:
void CalcCurlShape(const IntegrationPoint &ip,
DenseMatrix &curl_shape) const override;
using FiniteElement::Project;
/** Evaluate the dofs that are defined on this element.
Dofs that can not be evaluated will remain unmodified. */
void Project(VectorCoefficient &vcoeff,
ElementTransformation &Trans, Vector &dofs) const override;
~NURBS_HCurl3DFiniteElement();
};
+3 -3
View File
@@ -2006,7 +2006,7 @@ RT_R1D_SegmentElement::RT_R1D_SegmentElement(const int p,
const int cb_type,
const int ob_type)
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 4, p + 1,
H_DIV, FunctionSpace::Pk),
H_DIV_R1D, FunctionSpace::Pk),
dof2nk(dof),
cbasis1d(poly1d.GetBasis(p + 1, VerifyClosed(cb_type))),
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
@@ -2281,7 +2281,7 @@ const real_t RT_R2D_SegmentElement::nk[2] = { 0.,1.};
RT_R2D_SegmentElement::RT_R2D_SegmentElement(const int p,
const int ob_type)
: VectorFiniteElement(1, Geometry::SEGMENT, p + 1, p + 1,
H_DIV, FunctionSpace::Pk),
H_DIV_R2D, FunctionSpace::Pk),
dof2nk(dof),
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
{
@@ -2392,7 +2392,7 @@ void RT_R2D_SegmentElement::LocalInterpolation(const VectorFiniteElement &cfe,
RT_R2D_FiniteElement::RT_R2D_FiniteElement(int p, Geometry::Type G, int Do,
const real_t *nk_fe)
: VectorFiniteElement(2, G, Do, p + 1,
H_DIV, FunctionSpace::Pk),
H_DIV_R2D, FunctionSpace::Pk),
nk(nk_fe),
dof_map(dof),
dof2nk(dof)
+6
View File
@@ -510,6 +510,9 @@ public:
RT_R2D_SegmentElement(const int p,
const int ob_type = BasisType::GaussLegendre);
int GetPhysRangeDim(int space_dim) const override { return 2; }
int GetPhysCurlDim(int space_dim) const override { return 0; }
void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const override;
@@ -547,6 +550,9 @@ private:
DenseMatrix &I) const;
public:
int GetPhysRangeDim(int space_dim) const override { return 3; }
int GetPhysCurlDim(int space_dim) const override { return 0; }
using FiniteElement::CalcVShape;
void CalcVShape(ElementTransformation &Trans,
+13 -13
View File
@@ -111,36 +111,36 @@ public:
| :------: | :---: | :---: | :-------: | :-----: | :---: |
| H1_[DIM]_[ORDER] | H1 | * | 1 | VALUE | H1 nodal elements |
| H1@[BTYPE]_[DIM]_[ORDER] | H1 | * | * | VALUE | H1 nodal elements |
| H1Pos_[DIM]_[ORDER] | H1 | * | 1 | VALUE | H1 nodal elements |
| H1Pos_[DIM]_[ORDER] | H1 | * | 2 | VALUE | H1 nodal elements |
| H1Pos_Trace_[DIM]_[ORDER] | H^{1/2} | * | 2 | VALUE | H^{1/2}-conforming trace elements for H1 defined on the interface between mesh elements (faces,edges,vertices) |
| H1_Trace_[DIM]_[ORDER] | H^{1/2} | * | 1 | VALUE | H^{1/2}-conforming trace elements for H1 defined on the interface between mesh elements (faces,edges,vertices) |
| H1_Trace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | 1 | VALUE | H^{1/2}-conforming trace elements for H1 defined on the interface between mesh elements (faces,edges,vertices) |
| H1_Trace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | * | VALUE | H^{1/2}-conforming trace elements for H1 defined on the interface between mesh elements (faces,edges,vertices) |
| ND_[DIM]_[ORDER] | H(curl) | * | 1 / 0 | H_CURL | Nedelec vector elements |
| ND@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H(curl) | * | * / * | H_CURL | Nedelec vector elements |
| ND_Trace_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | H_CURL | H^{1/2}-conforming trace elements for H(curl) defined on the interface between mesh elements (faces) |
| ND_Trace@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | H_CURL | H^{1/2}-conforming trace elements for H(curl) defined on the interface between mesh elements (faces) |
| ND_Trace_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | H_CURL | H^{1/2}-conforming trace elements for H(curl) defined on the interface between mesh elements (faces,edges) |
| ND_Trace@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H^{1/2} | * | * / * | H_CURL | H^{1/2}-conforming trace elements for H(curl) defined on the interface between mesh elements (faces,edges) |
| ND_R1D_[DIM]_[ORDER] | H(curl) | * | 1 / 0 | H_CURL | 3D H(curl)-conforming Nedelec vector elements in 1D. |
| ND_R1D@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H(curl) | * | * / * | H_CURL | 3D H(curl)-conforming Nedelec vector elements in 1D. |
| ND_R2D_[DIM]_[ORDER] | H(curl) | * | 1 / 0 | H_CURL | 3D H(curl)-conforming Nedelec vector elements in 2D. |
| ND_R2D@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H(curl) | * | * / * | H_CURL | 3D H(curl)-conforming Nedelec vector elements in 2D. |
| RT_[DIM]_[ORDER] | H(div) | * | 1 / 0 | H_DIV | Raviart-Thomas vector elements |
| RT@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H(div) | * | * / * | H_DIV | Raviart-Thomas vector elements |
| RT_Trace_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | INTEGRAL | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_ValTrace_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | VALUE | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_Trace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | INTEGRAL | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_ValTrace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | VALUE | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_Trace_[DIM]_[ORDER] | H^{1/2} | * | 0 | INTEGRAL | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_ValTrace_[DIM]_[ORDER] | H^{1/2} | * | 0 | VALUE | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_Trace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | * | INTEGRAL | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_ValTrace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | * | VALUE | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_R1D_[DIM]_[ORDER] | H(div) | * | 1 / 0 | H_DIV | 3D H(div)-conforming Raviart-Thomas vector elements in 1D. |
| RT_R1D@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H(div) | * | * / * | H_DIV | 3D H(div)-conforming Raviart-Thomas vector elements in 1D. |
| RT_R2D_[DIM]_[ORDER] | H(div) | * | 1 / 0 | H_DIV | 3D H(div)-conforming Raviart-Thomas vector elements in 2D. |
| RT_R2D@[CBTYPE][OBTYPE]_[DIM]_[ORDER] | H(div) | * | * / * | H_DIV | 3D H(div)-conforming Raviart-Thomas vector elements in 2D. |
| L2_[DIM]_[ORDER] | L2 | * | 0 | VALUE | Discontinuous L2 elements |
| L2_T[BTYPE]_[DIM]_[ORDER] | L2 | * | 0 | VALUE | Discontinuous L2 elements |
| L2_T[BTYPE]_[DIM]_[ORDER] | L2 | * | * | VALUE | Discontinuous L2 elements |
| L2Int_[DIM]_[ORDER] | L2 | * | 0 | INTEGRAL | Discontinuous L2 elements |
| L2Int_T[BTYPE]_[DIM]_[ORDER] | L2 | * | 0 | INTEGRAL | Discontinuous L2 elements |
| L2Int_T[BTYPE]_[DIM]_[ORDER] | L2 | * | * | INTEGRAL | Discontinuous L2 elements |
| DG_Iface_[DIM]_[ORDER] | - | * | 0 | VALUE | Discontinuous elements on the interface between mesh elements (faces) |
| DG_Iface@[BTYPE]_[DIM]_[ORDER] | - | * | 0 | VALUE | Discontinuous elements on the interface between mesh elements (faces) |
| DG_Iface@[BTYPE]_[DIM]_[ORDER] | - | * | * | VALUE | Discontinuous elements on the interface between mesh elements (faces) |
| DG_IntIface_[DIM]_[ORDER] | - | * | 0 | INTEGRAL | Discontinuous elements on the interface between mesh elements (faces) |
| DG_IntIface@[BTYPE]_[DIM]_[ORDER] | - | * | 0 | INTEGRAL | Discontinuous elements on the interface between mesh elements (faces) |
| DG_IntIface@[BTYPE]_[DIM]_[ORDER] | - | * | * | INTEGRAL | Discontinuous elements on the interface between mesh elements (faces) |
| NURBS[ORDER] | - | * | - | VALUE | Non-Uniform Rational B-Splines (NURBS) elements |
| LinearNonConf3D | - | 1 | 1 | VALUE | Piecewise-linear nonconforming finite elements in 3D |
| CrouzeixRaviart | - | - | - | - | Crouzeix-Raviart nonconforming elements in 2D |
@@ -172,7 +172,7 @@ public:
| :------: | :--------: |
| [DIM] | Dimension of the elements (1D, 2D, 3D) |
| [ORDER] | Approximation order of the elements (P0, P1, P2, ...) |
| [BTYPE] | BasisType of the element (0-GaussLegendre, 1 - GaussLobatto, 2-Bernstein, 3-OpenUniform, 4-CloseUniform, 5-OpenHalfUniform) |
| [BTYPE] | BasisType of the element (0-GaussLegendre, 1-GaussLobatto, 2-Bernstein, 3-OpenUniform, 4-CloseUniform, 5-OpenHalfUniform 6-Serendipity 7-ClosedGL 8-IntegratedGLL) |
| [OBTYPE] | Open BasisType of the element for elements which have both types |
| [CBTYPE] | Closed BasisType of the element for elements which have both types |
+78 -32
View File
@@ -282,14 +282,7 @@ int FiniteElementSpace::DofToVDof(int dof, int vd, int ndofs_) const
void FiniteElementSpace::AdjustVDofs(Array<int> &vdofs)
{
int n = vdofs.Size(), *vdof = vdofs;
for (int i = 0; i < n; i++)
{
int j;
if ((j = vdof[i]) < 0)
{
vdof[i] = -1-j;
}
}
for (int i = 0; i < n; i++) { vdof[i] = UnsignIndex(vdof[i]); }
}
void FiniteElementSpace::GetElementVDofs(int i, Array<int> &vdofs,
@@ -483,13 +476,14 @@ void FiniteElementSpace::ReorderElementToDofTable()
for (int k = 0, dof_counter = 0; k < nnz; k++)
{
const int sdof = J[k]; // signed dof
const int dof = (sdof < 0) ? -1-sdof : sdof;
const int dof = UnsignIndex(sdof);
int new_dof = dof_marker[dof];
if (new_dof < 0)
{
dof_marker[dof] = new_dof = dof_counter++;
}
J[k] = (sdof < 0) ? -1-new_dof : new_dof; // preserve the sign of sdof
// Preserve the sign of sdof
J[k] = (sdof < 0) ? FlipIndexSign(new_dof) : new_dof;
}
}
@@ -547,7 +541,7 @@ void MarkDofs(const Array<int> &dofs, Array<int> &mark_array)
{
for (auto d : dofs)
{
mark_array[d >= 0 ? d : -1 - d] = -1;
mark_array[UnsignIndex(d)] = -1;
}
}
@@ -931,7 +925,7 @@ void FiniteElementSpace::AddDependencies(
if (std::abs(coef) > 1e-12)
{
const int mdof = master_dofs[j];
if (mdof != sdof && mdof != (-1-sdof))
if (mdof != sdof && mdof != FlipIndexSign(sdof))
{
deps.Add(sdof, mdof, coef);
}
@@ -1024,7 +1018,7 @@ int FiniteElementSpace::GetDegenerateFaceDofs(int index, Array<int> &dofs,
// FiniteElementSpace::AddDependencies.
Array<int> edof;
int order = GetEdgeDofs(-1 - index, edof, variant);
int order = GetEdgeDofs(FlipIndexSign(index), edof, variant);
int nv = fec->DofForGeometry(Geometry::POINT);
int ne = fec->DofForGeometry(Geometry::SEGMENT);
@@ -1516,36 +1510,76 @@ const FaceRestriction *FiniteElementSpace::GetFaceRestriction(
const bool is_dg_space = IsDGSpace();
const L2FaceValues m = (is_dg_space && mul==L2FaceValues::DoubleValued) ?
L2FaceValues::DoubleValued : L2FaceValues::SingleValued;
key_face key = std::make_tuple(is_dg_space, f_ordering, type, m);
auto key = std::make_tuple(is_dg_space, f_ordering, type, m);
auto itr = L2F.find(key);
if (itr != L2F.end())
{
return itr->second;
return itr->second.get();
}
else
{
FaceRestriction *res;
std::unique_ptr<FaceRestriction> res;
if (is_dg_space)
{
if (Conforming())
{
res = new L2FaceRestriction(*this, f_ordering, type, m);
res.reset(new L2FaceRestriction(*this, f_ordering, type, m));
}
else
{
res = new NCL2FaceRestriction(*this, f_ordering, type, m);
res.reset(new NCL2FaceRestriction(*this, f_ordering, type, m));
}
}
else if (dynamic_cast<const DG_Interface_FECollection*>(fec))
{
res = new L2InterfaceFaceRestriction(*this, f_ordering, type);
res.reset(new L2InterfaceFaceRestriction(*this, f_ordering, type));
}
else
{
res = new ConformingFaceRestriction(*this, f_ordering, type);
res.reset(new ConformingFaceRestriction(*this, f_ordering, type));
}
L2F[key] = res;
return res;
return L2F.emplace(key, std::move(res)).first->second.get();
}
}
const InterpolationManager &FiniteElementSpace::GetInterpolationManager(
ElementDofOrdering f_ordering, FaceType type) const
{
const auto key = make_tuple(f_ordering, type);
auto it = interpolations.find(key);
if (it != interpolations.end())
{
return *it->second;
}
else
{
auto interp = make_unique<InterpolationManager>(*this, f_ordering, type);
int face_idx = 0;
for (int f = 0; f < mesh->GetNumFacesWithGhost(); ++f)
{
Mesh::FaceInformation face = mesh->GetFaceInformation(f);
if (!face.IsOfFaceType(type) || face.IsNonconformingCoarse())
{
continue;
}
if (face.IsConforming() || face.IsBoundary())
{
interp->RegisterFaceConformingInterpolation(face, face_idx);
}
else
{
interp->RegisterFaceCoarseToFineInterpolation(face, face_idx);
}
++face_idx;
}
// Transform the interpolation matrix map into contiguous memory.
interp->LinearizeInterpolatorMapIntoVector();
interp->InitializeNCInterpConfig();
return *interpolations.emplace(key, std::move(interp)).first->second;
}
}
@@ -1670,8 +1704,8 @@ SparseMatrix *FiniteElementSpace::RefinementMatrix_main(
for (int i = 0; i < fine_ldof; i++)
{
int r = DofToVDof(dofs[i], vd);
int m = (r >= 0) ? r : (-1 - r);
const int r = DofToVDof(dofs[i], vd);
const int m = UnsignIndex(r);
if (!mark[m])
{
@@ -1732,7 +1766,7 @@ SparseMatrix *FiniteElementSpace::VariableOrderRefinementMatrix(
for (int i = 0; i < fine_ldof; i++)
{
const int r = DofToVDof(dofs[i], vd);
int m = (r >= 0) ? r : (-1 - r);
const int m = UnsignIndex(r);
if (!mark[m])
{
@@ -2442,8 +2476,8 @@ SparseMatrix* FiniteElementSpace::DerefinementMatrix(int old_ndofs,
{
if (!std::isfinite(lR(i, 0))) { continue; }
int r = DofToVDof(dofs[i], vd);
int m = (r >= 0) ? r : (-1 - r);
const int r = DofToVDof(dofs[i], vd);
const int m = UnsignIndex(r);
if (is_dg || !mark[m])
{
@@ -3161,7 +3195,7 @@ void FiniteElementSpace::CalcEdgeFaceVarOrders(
else
{
// degenerate face (i.e., edge-face constraint)
slave_orders |= edge_orders[-1 - slave.index];
slave_orders |= edge_orders[FlipIndexSign(slave.index)];
}
}
@@ -3900,6 +3934,16 @@ const FiniteElement *FiniteElementSpace::GetBE(int i) const
return BE;
}
const FiniteElement *FiniteElementSpace::GetTypicalBE() const
{
if (mesh->GetNBE() > 0) { return GetBE(0); }
Geometry::Type geom = mesh->GetTypicalFaceGeometry();
const FiniteElement *be = fec->FiniteElementForGeometry(geom);
MFEM_VERIFY(be != nullptr, "Could not determine a typical BE!");
return be;
}
const FiniteElement *FiniteElementSpace::GetFaceElement(int i) const
{
MFEM_VERIFY(!IsVariableOrder(), "not implemented");
@@ -3930,6 +3974,11 @@ const FiniteElement *FiniteElementSpace::GetFaceElement(int i) const
return fe;
}
const FiniteElement *FiniteElementSpace::GetTypicalFaceElement() const
{
return fec->FiniteElementForGeometry(mesh->GetTypicalFaceGeometry());
}
const FiniteElement *FiniteElementSpace::GetEdgeElement(int i,
int variant) const
{
@@ -3969,11 +4018,8 @@ void FiniteElementSpace::Destroy()
delete E2Q_array[i];
}
E2Q_array.SetSize(0);
for (auto &x : L2F)
{
delete x.second;
}
L2F.clear();
interpolations.clear();
for (int i = 0; i < E2IFQ_array.Size(); i++)
{
delete E2IFQ_array[i];
+23 -14
View File
@@ -13,6 +13,7 @@
#define MFEM_FESPACE
#include "../config/config.hpp"
#include "../general/hash_util.hpp"
#include "../linalg/ordering.hpp"
#include "../linalg/sparsemat.hpp"
#include "../mesh/mesh.hpp"
@@ -320,18 +321,11 @@ protected:
mutable OperatorHandle L2E_nat, L2E_lex;
/// The face restriction operators, see GetFaceRestriction().
using key_face = std::tuple<bool, ElementDofOrdering, FaceType, L2FaceValues>;
struct key_hash
{
std::size_t operator()(const key_face& k) const
{
return std::get<0>(k)
+ 2 * (int)std::get<1>(k)
+ 4 * (int)std::get<2>(k)
+ 8 * (int)std::get<3>(k);
}
};
using map_L2F = std::unordered_map<const key_face,FaceRestriction*,key_hash>;
mutable map_L2F L2F;
mutable std::unordered_map<key_face,std::unique_ptr<FaceRestriction>,
TupleHasher> L2F;
mutable std::unordered_map<std::tuple<ElementDofOrdering,FaceType>,
std::unique_ptr<InterpolationManager>, TupleHasher> interpolations;
mutable Array<QuadratureInterpolator*> E2Q_array;
mutable Array<FaceQuadratureInterpolator*> E2IFQ_array;
@@ -751,6 +745,9 @@ public:
ElementDofOrdering f_ordering, FaceType,
L2FaceValues mul = L2FaceValues::DoubleValued) const;
const InterpolationManager &GetInterpolationManager(
ElementDofOrdering f_ordering, FaceType type) const;
/** @brief Return a QuadratureInterpolator that interpolates E-vectors to
quadrature point values and/or derivatives (Q-vectors). */
/** An E-vector represents the element-wise discontinuous version of the FE
@@ -842,7 +839,7 @@ public:
Note: For vector-valued elements, the results pads up the range dimension
to the spatial dimension. E.g., consider a stack of 5 vector-valued
elements each representing 2D vectors, living in a 3 dimensional space.
Then this fucntion would give 15, not 10.
Then this function would give 15, not 10.
*/
int GetVectorDim() const;
@@ -1153,7 +1150,7 @@ public:
/// Helper to return the DOF associated with a sign encoded DOF
static inline int DecodeDof(int dof)
{ return (dof >= 0) ? dof : (-1 - dof); }
{ return UnsignIndex(dof); }
/// Helper to determine the DOF and sign of a sign encoded DOF
static inline int DecodeDof(int dof, real_t& sign)
@@ -1326,12 +1323,24 @@ public:
associated with i'th boundary face in the mesh object. */
const FiniteElement *GetBE(int i) const;
/// @brief Return a "typical" boundary element.
///
/// This can be used in situations where the local mesh partition may be
/// empty.
const FiniteElement *GetTypicalBE() const;
/** @brief Returns pointer to the FiniteElement in the FiniteElementCollection
associated with i'th face in the mesh object. Faces in this case refer
to the MESHDIM-1 primitive so in 2D they are segments and in 1D they are
points.*/
const FiniteElement *GetFaceElement(int i) const;
/// @brief Return a "typical" face element.
///
/// This can be used in situations where the local mesh partition may be
/// empty.
const FiniteElement *GetTypicalFaceElement() const;
/** @brief Returns pointer to the FiniteElement in the FiniteElementCollection
associated with i'th edge in the mesh object. */
const FiniteElement *GetEdgeElement(int i, int variant = 0) const;
+1163 -133
View File
File diff suppressed because it is too large Load Diff
+278 -32
View File
@@ -23,10 +23,29 @@
#include <limits>
#include <ostream>
#include <string>
#include <variant>
namespace mfem
{
/** This enumerated type describes the three main projection types:
- ELEMENT, assigns the degree of freedom per element, as specified in the
specific element
- GLOBAL_L2, solves a global L2 projection
- ELEMENT_L2, solves a element level L2 projection. Inter element
connectivity is dealt with similar as in:
Bezier-Projection : A unified approach for local projection and
quadrature-free refinement and coarsening of NURBS and T-splines with
particular application to isogeometric design and analysis
[CMAME (284) 2015 pg 55-105]
- DEFAULT, for NURBS spaces this is ELEMENT_L2, while for all other spaces
this ELEMENT.
Note 1: ELEMENT_L2 also works for non NURBS elements
Note 2: For NURBS elements the ELEMENT projection gives results without
over and undershoots. However, the gradient near the boundary does not
converge.*/
enum class ProjectType { DEFAULT, ELEMENT, GLOBAL_L2, ELEMENT_L2 };
/// Class for grid function - Vector with associated FE space.
class GridFunction : public Vector
{
@@ -61,10 +80,23 @@ protected:
bool wcoef,
int subdomain);
/** Project a discontinuous vector coefficient in a continuous space and
return in dof_attr the maximal attribute of the elements containing each
degree of freedom. */
void ProjectDiscCoefficient(VectorCoefficient &coeff, Array<int> &dof_attr);
/** @brief Project a discontinuous (vector) coefficient as a grid function on
a continuous finite element space. Return in dof_attr the maximal
attribute of the elements containing each degree of freedom. */
virtual void ProjectDiscCoefficient(
std::variant<Coefficient*, VectorCoefficient*> coeff, Array<int> &dof_attr);
/** @brief Project a discontinuous (vector) coefficient as a grid function on
a continuous finite element space. The values in shared dofs are
determined from the element with maximal attribute. */
virtual void ProjectDiscCoefficient(
std::variant<Coefficient*, VectorCoefficient*> coeff)
{ Array<int> dof_attr; ProjectDiscCoefficient(coeff, dof_attr); };
/** Helper function for ProjectCoefficientElementL2 */
void ProjectCoefficientElementL2_(Coefficient &coeff, Vector &sol, Vector &Va);
void ProjectCoefficientElementL2_(VectorCoefficient &vcoeff, Vector &sol,
Vector &Va);
/// Loading helper.
void LegacyNCReorder();
@@ -72,7 +104,6 @@ protected:
void Destroy();
public:
GridFunction() { fes = NULL; fec_owned = NULL; fes_sequence = 0; UseDevice(true); }
/// Copy constructor. The internal true-dof vector #t_vec is not copied.
@@ -84,6 +115,10 @@ public:
GridFunction(FiniteElementSpace *f) : Vector(f->GetVSize())
{ fes = f; fec_owned = NULL; fes_sequence = f->GetSequence(); UseDevice(true); }
/// Same as above but specify the memory type
GridFunction(FiniteElementSpace *f, MemoryType mt) : Vector(f->GetVSize(), mt)
{ fes = f; fec_owned = NULL; fes_sequence = f->GetSequence(); UseDevice(true); }
/// Construct a GridFunction using previously allocated array @a data.
/** The GridFunction does not assume ownership of @a data which is assumed to
be of size at least `f->GetVSize()`. Similar to the Vector constructor
@@ -124,11 +159,13 @@ public:
FiniteElementCollection *OwnFEC() { return fec_owned; }
/// Shortcut for calling FiniteElementSpace::GetVectorDim() on the underlying #fes
int VectorDim() const;
/** @brief Shortcut for calling FiniteElementSpace::GetVectorDim() on the
underlying #fes */
int VectorDim() const { return fes->GetVectorDim(); }
/// Shortcut for calling FiniteElementSpace::GetCurlDim() on the underlying #fes
int CurlDim() const;
/** @brief Shortcut for calling FiniteElementSpace::GetCurlDim() on the
underlying #fes */
int CurlDim() const { return fes->GetCurlDim(); }
/// Read only access to the (optional) internal true-dof Vector.
const Vector &GetTrueVector() const
@@ -420,9 +457,30 @@ public:
/** @brief Project @a coeff Coefficient to @a this GridFunction. The
projection computation depends on the choice of the FiniteElementSpace
#fes. Note that this is usually interpolation at the degrees of freedom
in each element (not L2 projection). For NURBS spaces these degrees of
freedom are not available and L2 projection is resorted to as fallback. */
virtual void ProjectCoefficient(Coefficient &coeff);
in each element (not L2 projection). For elements without a projection
member function one could use ProjectCoefficientGlobalL2 instead.
NOTE: For parallel simulations with NURBS elements some dofs might
not be defined, if the evaluation point does not reside on this rank.
If that is the case it is defined on another rank, and the issue is
rectified with the appropriate communication, see in ParGridFunction.
*/
virtual void ProjectCoefficient(Coefficient &coeff,
ProjectType type = ProjectType::DEFAULT);
/** @brief Project @a coeff Coefficient to @a this GridFunction. The
projection is a global L2 projection. This routine can be used a
fallback for elements without a projection member function.*/
virtual void ProjectCoefficientGlobalL2(Coefficient &coeff,
real_t rtol = 1e-12,
int iter = 1000);
/** @brief Project @a coeff Coefficient to @a this GridFunction. The
projection is an element local L2 projection, with an appropriate
weighting for Dofs that are shared between elements. Inspired on
Bezier-Projection [CMAME (284) 2015 pg 55-105]
This routine can be used a fallback for elements without a projection
member function.*/
virtual void ProjectCoefficientElementL2(Coefficient &coeff);
/** @brief Project @a coeff Coefficient to @a this GridFunction, using one
element for each degree of freedom in @a dofs and nodal interpolation on
@@ -432,9 +490,26 @@ public:
/** @brief Project @a vcoeff VectorCoefficient to @a this GridFunction. The
projection computation depends on the choice of the FiniteElementSpace
#fes. Note that this is usually interpolation at the degrees of freedom
in each element (not L2 projection). For NURBS spaces these degrees of
freedom are not available and L2 projection is resorted to as fallback. */
void ProjectCoefficient(VectorCoefficient &vcoeff);
in each element (not L2 projection). For elements without a projection
member function one could use ProjectCoefficientGlobalL2 instead.
NOTE: For parallel simulations with NURBS elements some dofs might
not be defined, if the evaluation point does not reside on this rank.
If that is the case it is defined on another rank, and the issue is
rectified with the appropriate communication, see in ParGridFunction.*/
virtual void ProjectCoefficient(VectorCoefficient &vcoeff,
ProjectType type = ProjectType::DEFAULT);
/** @brief Project @a coeff Coefficient to @a this GridFunction. The
projection is a global L2 projection. This routine can be used a
fallback for elements without a projection member function.*/
virtual void ProjectCoefficientGlobalL2(VectorCoefficient &vcoeff,
real_t rtol = 1e-12,
int iter = 1000);
/** @brief Project @a coeff Coefficient to @a this GridFunction. The
projection is a global L2 projection. This routine can be used a
fallback for elements without a projection member function.*/
virtual void ProjectCoefficientElementL2(VectorCoefficient &vcoeff);
/** @brief Project @a vcoeff VectorCoefficient to @a this GridFunction, using
one element for each degree of freedom in @a dofs and nodal interpolation
@@ -449,10 +524,17 @@ public:
but using an array of scalar coefficients for each component. */
void ProjectCoefficient(Coefficient *coeff[]);
/** @brief Project a discontinuous coefficient as a grid function on
a continuous finite element space. The values in shared dofs are
determined from the element with maximal attribute. */
virtual void ProjectDiscCoefficient(Coefficient &coeff)
{ ProjectDiscCoefficient(&coeff); }
/** @brief Project a discontinuous vector coefficient as a grid function on
a continuous finite element space. The values in shared dofs are
determined from the element with maximal attribute. */
virtual void ProjectDiscCoefficient(VectorCoefficient &coeff);
virtual void ProjectDiscCoefficient(VectorCoefficient &coeff)
{ ProjectDiscCoefficient(&coeff); }
enum AvgType {ARITHMETIC, HARMONIC};
/** @brief Projects a discontinuous coefficient so that the values in shared
@@ -468,6 +550,9 @@ public:
std::unique_ptr<GridFunction> ProlongateToMaxOrder() const;
protected:
void ProjectBdrCoefficientNormal(Coefficient *coeff, VectorCoefficient *vcoeff,
const Array<int> &attr);
/** @brief Accumulates (depending on @a type) the values of @a coeff at all
shared vdofs and counts in how many zones each vdof appears. */
void AccumulateAndCountZones(Coefficient &coeff, AvgType type,
@@ -500,6 +585,70 @@ protected:
/// P-refinement version of Update().
void UpdatePRef();
/** @brief Estimate the minimum value of the GridFunction in element @a elem
* if it is below a certain @a min_threshold.
*
* @details For a given element \p elem and grid function component \p vdim
* an estimate of the function minimum is the minimum of the piecewise
* linear lower bound obtained using the given PLBound object. The actual
* minimum is between [minimum lower bound, minimum upper bound]. We
* improve the estimate of the function minimum by recursively
* subdividing the interval with the lowest lower bound, and computing
* bounds on the sub-intervals.
* This process continues until (i) the maximum recursion depth is reached
* or (ii) the difference between the minimum upper bound and minimum lower
* bound is less than a certain tolerance (\p tol * [initial maximum
* upper bound - initial minimum lower bound]).
* The function also terminates if the lowest minima estimate is found
* to be above the given threshold \p min_threshold. This is useful when
* we are interested in computing the global minimum of the function
* over all elements. In this case we can reject elements where the lowest
* bound is above the current global minimum. In case the function
* minimum on the element is below the global minimum, we update
* \p min_threshold.
*
* We return a pair of values that bracket the actual minimum, i.e.
* [min_lower_bound, min_upper_bound].
*/
std::pair<real_t,real_t> EstimateFunctionMinimum(const int elem,
const PLBound &plb,
const int vdim,
const int max_depth,
const real_t tol,
real_t &min_threshold)const;
/** @brief Estimate the maximum value of the GridFunction in element @a elem
* if it is below a certain @a max_threshold.
*
* @details For a given element \p elem and grid function component \p vdim
* an estimate of the function maximum is the maximum of the piecewise
* linear upper bound obtained using the given PLBound object. The actual
* maximum is between [maximum lower bound, maximum upper bound]. We
* improve the estimate of the function maximum by recursively
* subdividing the interval with the highest upper bound, and computing
* bounds on the sub-intervals.
* This process continues until (i) the maximum recursion depth is reached
* or (ii) the difference between the maximum upper bound and maximum lower
* bound is less than a certain tolerance (\p tol * [initial maximum
* upper bound - initial maximum lower bound]).
* The function also terminates if the highest maxima estimate is found
* to be below the given threshold \p max_threshold. This is useful when
* we are interested in computing the global maximum of the function
* over all elements. In this case we can reject elements where the upper
* bound is below the current global maximum. In case the function
* maximum on the element is above the global maximum, we update
* \p max_threshold.
*
* We return a pair of values that bracket the actual maximum, i.e.
* [max_lower_bound, max_upper_bound].
*/
std::pair<real_t,real_t> EstimateFunctionMaximum(const int elem,
const PLBound &plb,
const int vdim,
const int max_depth,
const real_t tol,
real_t &max_threshold)const;
public:
/** @brief For each vdof, counts how many elements contain the vdof,
as containment is determined by FiniteElementSpace::GetElementVDofs(). */
@@ -528,15 +677,26 @@ public:
virtual void ProjectBdrCoefficient(Coefficient *coeff[],
const Array<int> &attr);
/** Project the normal component of the given VectorCoefficient on
the boundary. Only boundary attributes that are marked in
'bdr_attr' are projected. Assumes RT-type VectorFE GridFunction. */
/** @brief Project the normal component of the given VectorCoefficient on
the boundary. */
/** Only boundary attributes that are marked in @a bdr_attr are
projected. Assumes RT-type vector finite element GridFunction. */
void ProjectBdrCoefficientNormal(VectorCoefficient &vcoeff,
const Array<int> &bdr_attr);
const Array<int> &bdr_attr)
{ ProjectBdrCoefficientNormal(NULL, &vcoeff, bdr_attr); }
/** @brief Project the given Coefficient in the normal direction on the
boundary. */
/** Only boundary attributes that are marked in @a bdr_attr are projected.
Assumes RT-type vector finite element GridFunction. */
void ProjectBdrCoefficientNormal(Coefficient &coeff,
const Array<int> &bdr_attr)
{ ProjectBdrCoefficientNormal(&coeff, NULL, bdr_attr); }
/** @brief Project the tangential components of the given VectorCoefficient
on the boundary. Only boundary attributes that are marked in @a bdr_attr
are projected. Assumes ND-type VectorFE GridFunction. */
on the boundary. */
/** Only boundary attributes that are marked in @a bdr_attr
are projected. Assumes ND-type vector finite element GridFunction. */
virtual void ProjectBdrCoefficientTangent(VectorCoefficient &vcoeff,
const Array<int> &bdr_attr);
@@ -1598,21 +1758,21 @@ public:
*/
///@{
/// Computes the \ref PLBound for the gridfunction with number of control
/// points based on @a ref_factor, and returns the overall bounds for each
/// vdim (across all elements) in @b lower and @b upper. We also return the
/// points based on \p ref_factor, and returns the overall bounds for each
/// vdim (across all elements) in \p lower and \p upper. We also return the
/// PLBound object used to compute the bounds.
/// We compute the bounds for each vdim if @a vdim < 1.
/// We compute the bounds for each vdim if \p vdim < 1.
/// Note: For most cases, this method/interface will be sufficient.
virtual PLBound GetBounds(Vector &lower, Vector &upper,
const int ref_factor=1, const int vdim=-1) const;
/// Computes the \ref PLBound for the gridfunction with number of control
/// points based on @a ref_factor, and returns the bounds for each element
/// ordered byVDim:
/// points based on \p ref_factor, and returns the bounds for each element
/// ordered byNodes:
/// lower_{0,0}, lower_{1,0}, ..., lower_{ne-1,0},
/// lower_{0,1}, ..., lower_{ne-1,vdim-1}. We also return the
/// PLBound object used to compute the bounds.
/// We compute the bounds for each vdim if @a vdim < 1.
/// We compute the bounds for each vdim if \p vdim < 1.
PLBound GetElementBounds(Vector &lower, Vector &upper,
const int ref_factor=1, const int vdim=-1) const;
@@ -1623,6 +1783,18 @@ public:
Vector &lower, Vector &upper,
const int vdim = -1) const;
/** @brief Gets the bounds on given reference range inside an element.
*
* @details @a ref_range is a vector of size 2*dim that specifies the
* lower and upper limits in each dimension of the reference element.
* For example, in 2D, ref_range = [rmin, smin, rmax, smax].
*/
void GetElementBoundsAtControlPoints(const int elem, const PLBound &plb,
const Vector &ref_range,
const int vdim,
Vector &lower, Vector &upper,
Vector &control_pos) const;
/// Compute bounds on the grid function for the given element.
/// The bounds are stored in @b lower and @b upper.
void GetElementBounds(const int elem, const PLBound &plb,
@@ -1630,11 +1802,45 @@ public:
const int vdim = -1) const;
/// Compute bounds on the grid function for all the elements. The bounds
/// are returned in @b lower and @b upper, ordered byVDim:
/// are returned in @b lower and @b upper, ordered byNodes:
/// lower_{0,0}, lower_{1,0}, ..., lower_{ne-1,0},
/// lower_{0,1}, ..., lower_{ne-1,vdim-1}
void GetElementBounds(const PLBound &plb, Vector &lower, Vector &upper,
const int vdim=-1) const;
/** @brief Estimate the minimum value of the GridFunction in element @a elem.
*
* @details See the protected version of EstimateFunctionMinimum for
* details.
*/
std::pair<real_t, real_t> EstimateFunctionMinimum(const int elem,
const PLBound &plb,
const int vdim,
const int max_depth,
const real_t tol) const;
/** @brief Estimate the minimum value of the GridFunction in element @a elem.
*
* @details See the protected version of EstimateFunctionMaximum for
* details.
*/
std::pair<real_t, real_t> EstimateFunctionMaximum(const int elem,
const PLBound &plb,
const int vdim,
const int max_depth,
const real_t tol) const;
/** @brief Estimate the GridFunction minimum across all elements. */
virtual std::pair<real_t,real_t> EstimateFunctionMinimum(const int vdim,
const PLBound &plb,
const int max_depth,
const real_t tol) const;
/** @brief Estimate the GridFunction maximum across all elements. */
virtual std::pair<real_t,real_t> EstimateFunctionMaximum(const int vdim,
const PLBound &plb,
const int max_depth,
const real_t tol) const;
///@}
/// Destroys grid function.
@@ -1740,7 +1946,7 @@ real_t ComputeElementLpDistance(real_t p, int i,
GridFunction& gf1, GridFunction& gf2);
/// Class used for extruding scalar GridFunctions
/// Class used for extruding a scalar coefficient
class ExtrudeCoefficient : public Coefficient
{
private:
@@ -1748,13 +1954,53 @@ private:
Mesh *mesh_in;
Coefficient &sol_in;
public:
/// Constructs an instance of VectorExtrudeCoefficient
/**
* @param m 1D mesh
* @param s 1D vector coefficient
* @param n_ number of transverse elements of the extruded mesh
*/
ExtrudeCoefficient(Mesh *m, Coefficient &s, int n_)
: n(n_), mesh_in(m), sol_in(s) { }
: n(n_), mesh_in(m), sol_in(s)
{ MFEM_VERIFY(n > 0, "Number of transverse elements must be positive!"); }
real_t Eval(ElementTransformation &T, const IntegrationPoint &ip) override;
virtual ~ExtrudeCoefficient() { }
};
/// Extrude a scalar 1D GridFunction, after extruding the mesh with Extrude1D.
/// Class used for extruding a vector coefficient
class VectorExtrudeCoefficient : public VectorCoefficient
{
private:
int n;
Mesh *mesh_in;
VectorCoefficient &sol_in;
public:
/// Constructs an instance of VectorExtrudeCoefficient
/**
* @param m 1D mesh
* @param s 1D vector coefficient
* @param n_ number of transverse elements of the extruded mesh
*/
VectorExtrudeCoefficient(Mesh *m, VectorCoefficient &s, int n_)
: VectorCoefficient(s.GetVDim()), n(n_), mesh_in(m), sol_in(s)
{ MFEM_VERIFY(n > 0, "Number of transverse elements must be positive!"); }
void Eval(Vector &v, ElementTransformation &T,
const IntegrationPoint &ip) override;
using VectorCoefficient::Eval;
virtual ~VectorExtrudeCoefficient() { }
};
/// Extrude a 1D GridFunction, after extruding the mesh with Extrude1D()
/**
* @param mesh 1D mesh
* @param mesh2d extruded mesh
* @param sol grid function
* @param ny number of transverse elements of the extruded mesh
*/
GridFunction *Extrude1DGridFunction(Mesh *mesh, Mesh *mesh2d,
GridFunction *sol, const int ny);
+65 -37
View File
@@ -234,7 +234,7 @@ void FindPointsGSLIB::Setup(Mesh &m, const double bb_t, const double newt_tol,
}
void FindPointsGSLIB::FindPoints(const Vector &point_pos,
int point_pos_ordering)
const int point_pos_ordering)
{
MFEM_VERIFY(setupflag, "Use FindPointsGSLIB::Setup before finding points.");
bool dev_mode = (point_pos.UseDevice() && Device::IsEnabled());
@@ -482,7 +482,7 @@ void FindPointsGSLIB::SetupDevice()
}
void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
int point_pos_ordering)
const int point_pos_ordering)
{
if (!DEV.setup_device)
{
@@ -490,7 +490,7 @@ void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
}
DEV.find_device = true;
const int id = gsl_comm->id, np = gsl_comm->np;
const unsigned int id = gsl_comm->id, np = gsl_comm->np;
gsl_mfem_ref.SetSize(points_cnt * dim);
gsl_mfem_elem.SetSize(points_cnt);
@@ -505,13 +505,13 @@ void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
if (dim == 2)
{
FindPointsLocal2(point_pos, point_pos_ordering, gsl_code, gsl_elem, gsl_ref,
gsl_dist, points_cnt);
FindPointsLocal2(point_pos, point_pos_ordering, gsl_code, gsl_elem,
gsl_ref, gsl_dist, points_cnt);
}
else
{
FindPointsLocal3(point_pos, point_pos_ordering, gsl_code, gsl_elem, gsl_ref,
gsl_dist, points_cnt);
FindPointsLocal3(point_pos, point_pos_ordering, gsl_code, gsl_elem,
gsl_ref, gsl_dist, points_cnt);
}
// Sync from device to host
@@ -652,7 +652,7 @@ void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
{
const int pp = hash_offset[i];
/* don't send back to where it just came from */
if (pp == p->proc)
if (static_cast<unsigned>(pp) == p->proc)
{
continue;
}
@@ -1068,7 +1068,7 @@ void FindPointsGSLIB::InterpolateOnDevice(const Vector &field_in_evec,
sarray_transfer(struct evalOutPt_t, &outpt, proc, 1, cr);
opt = (evalOutPt_t *)outpt.ptr;
for (int index = 0; index < outpt.n; index++)
for (size_t index = 0; index < outpt.n; index++)
{
int idx = ordering == Ordering::byNODES ?
opt->index + i*points_cnt :
@@ -1085,7 +1085,7 @@ void FindPointsGSLIB::InterpolateOnDevice(const Vector &field_in_evec,
#else
void FindPointsGSLIB::SetupDevice() {};
void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
int point_pos_ordering) {};
const int point_pos_ordering) {};
void FindPointsGSLIB::InterpolateOnDevice(const Vector &field_in_evec,
Vector &field_out,
const int nel, const int ncomp,
@@ -1094,7 +1094,8 @@ void FindPointsGSLIB::InterpolateOnDevice(const Vector &field_in_evec,
#endif
void FindPointsGSLIB::FindPoints(Mesh &m, const Vector &point_pos,
int point_pos_ordering, const double bb_t,
const int point_pos_ordering,
const double bb_t,
const double newt_tol, const int npt_max)
{
if (!setupflag || (mesh != &m) )
@@ -1105,16 +1106,28 @@ void FindPointsGSLIB::FindPoints(Mesh &m, const Vector &point_pos,
}
void FindPointsGSLIB::Interpolate(const Vector &point_pos,
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering)
const GridFunction &field_in,
Vector &field_out,
const int point_pos_ordering)
{
FindPoints(point_pos, point_pos_ordering);
Interpolate(field_in, field_out);
}
void FindPointsGSLIB::Interpolate(const Vector &point_pos,
const GridFunction &field_in,
Vector &field_out,
const int point_pos_ordering,
const int field_out_ordering)
{
FindPoints(point_pos, point_pos_ordering);
Interpolate(field_in, field_out, field_out_ordering);
}
void FindPointsGSLIB::Interpolate(Mesh &m, const Vector &point_pos,
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering)
const GridFunction &field_in,
Vector &field_out,
const int point_pos_ordering)
{
FindPoints(m, point_pos, point_pos_ordering);
Interpolate(field_in, field_out);
@@ -1400,7 +1413,7 @@ void FindPointsGSLIB::SetupSplitMeshesAndIntegrationRules(const int order)
{
MFEM_VERIFY(mesh, "Setup FindPointsGSLIB with mesh first.");
const int dof1D = order+1;
const int dim = mesh->Dimension();
dim = mesh->Dimension();
SetupSplitMeshes();
if (dim == 2)
@@ -1470,7 +1483,7 @@ void FindPointsGSLIB::SetupSplitMeshesAndIntegrationRules(const int order)
}
void FindPointsGSLIB::GetNodalValues(const GridFunction *gf_in,
Vector &node_vals)
Vector &node_vals) const
{
const GridFunction *nodes = gf_in;
const FiniteElementSpace *fes = nodes->FESpace();
@@ -1758,6 +1771,13 @@ void FindPointsGSLIB::MapRefPosAndElemIndices()
void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
Vector &field_out)
{
Interpolate(field_in, field_out, field_in.FESpace()->GetOrdering());
}
void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
Vector &field_out,
const int field_out_ordering)
{
const int gf_order = field_in.FESpace()->GetMaxElementOrder(),
mesh_order = mesh->GetNodalFESpace()->GetMaxElementOrder();
@@ -1800,7 +1820,7 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
const int maxOrder = field_in.FESpace()->GetMaxElementOrder();
InterpolateOnDevice(node_vals, field_out, NE_split_total, ncomp,
maxOrder+1, field_in.FESpace()->GetOrdering());
maxOrder+1, field_out_ordering);
return;
#endif
}
@@ -1812,12 +1832,13 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
field_in.FESpace()->IsVariableOrder() ==
mesh->GetNodalFESpace()->IsVariableOrder())
{
InterpolateH1(field_in, field_out);
InterpolateH1(field_in, field_out, field_out_ordering);
return;
}
else
{
InterpolateGeneral(field_in, field_out);
InterpolateGeneral(field_in, field_out,
field_out_ordering);
if (!fec_l2 || avgtype == AvgType::NONE) { return; }
}
@@ -1861,11 +1882,11 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
if (gf_order_h1 == mesh_order) // basis is GaussLobatto by default
{
InterpolateH1(field_in_h1, field_out_l2);
InterpolateH1(field_in_h1, field_out_l2, field_out_ordering);
}
else
{
InterpolateGeneral(field_in_h1, field_out_l2);
InterpolateGeneral(field_in_h1, field_out_l2, field_out_ordering);
}
// Copy interpolated values for the points on element border
@@ -1873,7 +1894,7 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
{
for (int i = 0; i < indl2.Size(); i++)
{
int idx = field_in_h1.FESpace()->GetOrdering() == Ordering::byNODES?
int idx = field_out_ordering == Ordering::byNODES?
indl2[i] + j*points_cnt:
indl2[i]*ncomp + j;
field_out(idx) = field_out_l2(idx);
@@ -1883,7 +1904,8 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
}
void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
Vector &field_out)
Vector &field_out,
const int field_out_ordering)
{
FiniteElementSpace ind_fes(mesh, field_in.FESpace()->FEColl());
if (field_in.FESpace()->IsVariableOrder())
@@ -1913,7 +1935,8 @@ void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
dataptrout = i*points_cnt;
if (field_in.FESpace()->GetOrdering() == Ordering::byNODES)
{
field_in_scalar.NewDataAndSize(field_in.GetData()+dataptrin, points_fld);
field_in_scalar.NewDataAndSize(field_in.GetData()+dataptrin,
points_fld);
}
else
{
@@ -1945,7 +1968,7 @@ void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
(gslib::findpts_data_3 *)this->fdataD);
}
}
if (field_in.FESpace()->GetOrdering() == Ordering::byVDIM)
if (field_out_ordering == Ordering::byVDIM)
{
Vector field_out_temp = field_out;
for (int i = 0; i < ncomp; i++)
@@ -1959,7 +1982,8 @@ void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
}
void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
Vector &field_out)
Vector &field_out,
const int field_out_ordering)
{
int ncomp = field_in.VectorDim(),
nptorig = points_cnt,
@@ -1979,7 +2003,7 @@ void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
if (dim == 3) { ip.z = gsl_mfem_ref(index*dim + 2); }
Vector localval(ncomp);
field_in.GetVectorValue(gsl_mfem_elem[index], ip, localval);
if (field_in.FESpace()->GetOrdering() == Ordering::byNODES)
if (field_out_ordering == Ordering::byNODES)
{
for (int i = 0; i < ncomp; i++)
{
@@ -2014,7 +2038,10 @@ void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
for (int index = 0; index < npt; index++)
{
if (gsl_code[index] == 2) { continue; }
for (int d = 0; d < dim; ++d) { pt->r[d]= gsl_mfem_ref(index*dim + d); }
for (int d = 0; d < dim; ++d)
{
pt->r[d]= gsl_mfem_ref(index*dim + d);
}
pt->index = index;
pt->proc = gsl_proc[index];
pt->el = gsl_mfem_elem[index];
@@ -2104,7 +2131,7 @@ void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
sdpt = (struct send_pt *)sendpt->ptr;
for (int index = 0; index < static_cast<int>(sendpt->n); index++)
{
int idx = field_in.FESpace()->GetOrdering() == Ordering::byNODES ?
int idx = field_out_ordering == Ordering::byNODES ?
sdpt->index + j*nptorig :
sdpt->index*ncomp + j;
field_out(idx) = sdpt->ival;
@@ -2227,7 +2254,8 @@ void FindPointsGSLIB::DistributeInterpolatedValues(const Vector &int_vals,
sarray_transfer(struct out_pt, outpt, proc, 1, cr);
// Store received data
MFEM_VERIFY(outpt->n == points_cnt, "Incompatible size. Number of points "
MFEM_VERIFY(outpt->n == static_cast<size_t>(points_cnt),
"Incompatible size. Number of points "
"received does not match the number of points originally "
"found using FindPoints.");
@@ -2246,7 +2274,7 @@ void FindPointsGSLIB::DistributeInterpolatedValues(const Vector &int_vals,
}
}
void FindPointsGSLIB::GetAxisAlignedBoundingBoxes(Vector &aabb)
void FindPointsGSLIB::GetAxisAlignedBoundingBoxes(Vector &aabb) const
{
MFEM_VERIFY(setupflag, "Call FindPointsGSLIB::Setup method first");
auto *findptsData3 = (gslib::findpts_data_3 *)this->fdataD;
@@ -2317,7 +2345,7 @@ void FindPointsGSLIB::GetAxisAlignedBoundingBoxes(Vector &aabb)
}
void FindPointsGSLIB::GetOrientedBoundingBoxes(DenseTensor &obbA, Vector &obbC,
Vector &obbV)
Vector &obbV) const
{
MFEM_VERIFY(setupflag, "Call FindPointsGSLIB::Setup method first");
auto *findptsData3 = (gslib::findpts_data_3 *)this->fdataD;
@@ -2502,8 +2530,8 @@ void OversetFindPointsGSLIB::Setup(Mesh &m, const int meshid,
}
void OversetFindPointsGSLIB::FindPoints(const Vector &point_pos,
Array<unsigned int> &point_id,
int point_pos_ordering)
const Array<unsigned int> &point_id,
const int point_pos_ordering)
{
MFEM_VERIFY(setupflag, "Use OversetFindPointsGSLIB::Setup before "
"finding points.");
@@ -2582,10 +2610,10 @@ void OversetFindPointsGSLIB::FindPoints(const Vector &point_pos,
}
void OversetFindPointsGSLIB::Interpolate(const Vector &point_pos,
Array<unsigned int> &point_id,
const Array<unsigned int> &point_id,
const GridFunction &field_in,
Vector &field_out,
int point_pos_ordering)
const int point_pos_ordering)
{
FindPoints(point_pos, point_id, point_pos_ordering);
Interpolate(field_in, field_out);
+38 -15
View File
@@ -119,11 +119,13 @@ protected:
} DEV;
/// Use GSLIB for communication and interpolation
virtual void InterpolateH1(const GridFunction &field_in, Vector &field_out);
virtual void InterpolateH1(const GridFunction &field_in, Vector &field_out,
const int field_out_ordering);
/// Uses GSLIB Crystal Router for communication followed by MFEM's
/// interpolation functions
virtual void InterpolateGeneral(const GridFunction &field_in,
Vector &field_out);
Vector &field_out,
const int field_out_ordering);
/// Since GSLIB is designed to work with quads/hexes, we split every
/// triangle/tet/prism/pyramid element into quads/hexes.
@@ -140,7 +142,7 @@ protected:
virtual void SetupSplitMeshesAndIntegrationRules(const int order);
/// Get GridFunction value at the points expected by GSLIB.
virtual void GetNodalValues(const GridFunction *gf_in, Vector &node_vals);
virtual void GetNodalValues(const GridFunction *gf_in, Vector &node_vals) const;
/// Map {r,s,t} coordinates from [-1,1] to [0,1] for MFEM. For simplices,
/// find the original element number (that was split into micro quads/hexes)
@@ -182,7 +184,7 @@ protected:
These positions can be ordered byNodes: (XXX...,YYY...,ZZZ) or
byVDim: (XYZ,XYZ,....XYZ) specified by @a point_pos_ordering. */
void FindPointsOnDevice(const Vector &point_pos,
int point_pos_ordering = Ordering::byNODES);
const int point_pos_ordering = Ordering::byNODES);
/** Interpolation of field values at prescribed reference space positions.
@param[in] field_in_evec E-vector of grid function to be interpolated.
@@ -200,13 +202,19 @@ protected:
const int dof1dsol, const int ordering);
public:
/// Serial constructor
FindPointsGSLIB();
/// Serial constructor + setup with given Mesh (see \ref Setup)
FindPointsGSLIB(Mesh &mesh_in, const double bb_t = 0.1,
const double newt_tol = 1.0e-12,
const int npt_max = 256);
#ifdef MFEM_USE_MPI
/// Constructor for ParMesh
FindPointsGSLIB(MPI_Comm comm_);
/// Constructor + setup with given ParMesh (see \ref Setup)
FindPointsGSLIB(ParMesh &mesh_in, const double bb_t = 0.1,
const double newt_tol = 1.0e-12,
const int npt_max = 256);
@@ -253,10 +261,15 @@ public:
#gsl_dist Distance between the sought and the found point
in physical space. */
void FindPoints(const Vector &point_pos,
int point_pos_ordering = Ordering::byNODES);
const int point_pos_ordering = Ordering::byNODES);
/// Convenience function when point positions are in a ParticleVector
void FindPoints(const ParticleVector &point_pos)
{
FindPoints(point_pos, point_pos.GetOrdering());
}
/// Setup FindPoints and search positions
void FindPoints(Mesh &m, const Vector &point_pos,
int point_pos_ordering = Ordering::byNODES,
const int point_pos_ordering = Ordering::byNODES,
const double bb_t = 0.1, const double newt_tol = 1.0e-12,
const int npt_max = 256);
@@ -266,20 +279,28 @@ public:
\p field_in is in H1 and in the same space as the
mesh that was given to Setup().
@param[out] field_out Interpolated values. For points that are not found
the value is set to #default_interp_value. */
the value is set to #default_interp_value.
The output ordering is determined from field_in.*/
virtual void Interpolate(const GridFunction &field_in, Vector &field_out);
/// Interpolation of field values, with output ordering specification.
virtual void Interpolate(const GridFunction &field_in, Vector &field_out,
const int field_out_ordering);
/** Search positions and interpolate. The ordering (byNODES or byVDIM) of
the output values in \p field_out corresponds to the ordering used
in the input GridFunction \p field_in. */
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
Vector &field_out,
int point_pos_ordering = Ordering::byNODES);
const int point_pos_ordering = Ordering::byNODES);
/// Search positions and interpolate with given point and output ordering.
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
Vector &field_out, const int point_pos_ordering,
const int field_out_ordering);
/** Setup FindPoints, search positions and interpolate. The ordering (byNODES
or byVDIM) of the output values in \p field_out corresponds to the
ordering used in the input GridFunction \p field_in. */
void Interpolate(Mesh &m, const Vector &point_pos,
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering = Ordering::byNODES);
const int point_pos_ordering = Ordering::byNODES);
/// Average type to be used for L2 functions in-case a point is located at
/// an element boundary where the function might be multi-valued.
@@ -376,7 +397,7 @@ public:
/// The size of the returned vector is (nel x nverts x dim), where nel is the
/// number of elements (after splitting for simplcies), nverts is number of
/// vertices (4 in 2D, 8 in 3D), and dim is the spatial dimension.
void GetAxisAlignedBoundingBoxes(Vector &aabb);
void GetAxisAlignedBoundingBoxes(Vector &aabb) const;
/// Return the oriented bounding boxes (OBB) computed during \ref Setup.
/// Each OBB is represented using the inverse transformation (A^{-1}) and
@@ -386,7 +407,8 @@ public:
/// size (dim x dim x nel), and the OBB centers are returned in \p obbC,
/// a vector of size (nel x dim). The vertices of the OBBs are returned in
/// \p obbV, a vector of size (nel x nverts x dim) .
void GetOrientedBoundingBoxes(DenseTensor &obbA, Vector &obbC, Vector &obbV);
void GetOrientedBoundingBoxes(DenseTensor &obbA, Vector &obbC,
Vector &obbV) const;
};
/** \brief OversetFindPointsGSLIB enables use of findpts for arbitrary number of
@@ -446,13 +468,14 @@ public:
byNodes: (XXX...,YYY...,ZZZ) or
byVDim: (XYZ,XYZ,....XYZ) */
void FindPoints(const Vector &point_pos,
Array<unsigned int> &point_id,
int point_pos_ordering = Ordering::byNODES);
const Array<unsigned int> &point_id,
const int point_pos_ordering = Ordering::byNODES);
/** Search positions and interpolate */
void Interpolate(const Vector &point_pos, Array<unsigned int> &point_id,
void Interpolate(const Vector &point_pos,
const Array<unsigned int> &point_id,
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering = Ordering::byNODES);
const int point_pos_ordering = Ordering::byNODES);
using FindPointsGSLIB::Interpolate;
};
+1 -1
View File
@@ -254,7 +254,7 @@ get_edge(const double *elx[2], const double *wtend, int ei,
edge.dxdn[d] = workspace + (2 + d) * pN; //dxdn and dydn at DOFs along edge
}
if (side_init != (1u << ei))
if (static_cast<unsigned>(side_init) != (1u << ei))
{
#define ELX(d, j, k) elx[d][j + k * pN] // assumes lexicographic ordering
for (int d = 0; d < 2; ++d)
+2 -2
View File
@@ -294,7 +294,7 @@ get_face(const double *elx[3], const double *wtend, int fi, double *workspace,
face.dxdn[d] = workspace+(3+d)*p_Nfr;
}
if (side_init != (1u << fi))
if (static_cast<unsigned>(side_init) != (1u << fi))
{
const int e_stride[3] = {1, pN, pN*pN};
#define ELX(d, j, k, l) elx[d][j*e_stride[d1]+k*e_stride[d2]+l*e_stride[dn]]
@@ -342,7 +342,7 @@ get_edge(const double *elx[3], const double *wtend, int ei, double *workspace,
if (jidx >= 3*pN) { return edge; }
if (side_init != (64u << ei))
if (static_cast<unsigned>(side_init) != (64u << ei))
{
const int e_stride[3] = {1, pN, pN*pN};
#define ELX(d, j, k, l) elx[d][j*e_stride[de]+k*e_stride[dn1]+l*e_stride[dn2]]
+7 -1
View File
@@ -789,7 +789,6 @@ void Hybridization::ComputeH()
}
else
{
// TODO: add ones on the diagonal of zero rows
V->Finalize();
Array<HYPRE_BigInt> V_J(V->NumNonZeroElems());
MFEM_ASSERT(c_pfes, "");
@@ -823,6 +822,13 @@ void Hybridization::ComputeH()
MFEM_VERIFY(pH.Type() != Operator::PETSC_MATIS, "To be implemented");
pH.MakePtAP(plpH, pP);
delete lpH;
HypreParMatrix *hH = pH.As<HypreParMatrix>();
MFEM_ASSERT(hH, "");
SparseMatrix H_diag;
hH->GetDiag(H_diag);
H_diag.SetDiagIdentity();
}
#endif
}
+455 -275
View File
File diff suppressed because it is too large Load Diff
+20 -2
View File
@@ -14,8 +14,11 @@
#include "../config/config.hpp"
#include "../general/array.hpp"
#include "../linalg/operator.hpp"
#include "../linalg/vector.hpp"
#include <memory>
namespace mfem
{
@@ -45,15 +48,30 @@ protected:
Array<int> hat_dof_gather_map;
Array<DofType> hat_dof_marker;
Array<int> el_to_face;
Array<int> face_to_el;
Array<int> el_to_face; ///< Element to face connectivity.
Array<int> el_face_offsets; ///< Per-element offsets into @a el_to_face.
Array<int> face_to_el; ///< Face-to-element connectivity.
Array<int> face_face_offsets; ///< Face-to-face offsets.
int n_el_face; ///< Total number of element-to-face connections.
int n_face_face; ///< Total number of face-to-face connections.
Vector Ct_mat; ///< Constraint matrix (transposed) stored element-wise.
/// @name For parallel non-conforming meshes
///@{
std::unique_ptr<Operator> P_pc; ///< Partially conforming prolongation.
std::unique_ptr<Operator> P_nbr; ///< Face-neighbor prolongation.
///@}
Array<int> idofs, bdofs;
Vector Ahat, Ahat_ii, Ahat_ib, Ahat_bi, Ahat_bb;
Array<int> Ahat_ii_piv, Ahat_bb_piv;
/// Return the (partially) conforming prolongation on the constraint space.
const Operator &GetProlongation() const;
public:
/// Construct the constraint matrix.
void ConstructC();
+8 -5
View File
@@ -1004,13 +1004,16 @@ inline void SmemPADiffusionApply3D(const int NE,
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
MFEM_VERIFY(D1D <= max_d1d, "");
MFEM_VERIFY(Q1D <= max_q1d, "");
auto b = Reshape(b_.Read(), Q1D, D1D);
auto g = Reshape(g_.Read(), Q1D, D1D);
auto d = Reshape(d_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
const auto b = Reshape(b_.Read(), Q1D, D1D);
const auto g = Reshape(g_.Read(), Q1D, D1D);
const auto d = Reshape(d_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
const auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_VERIFY(D1D <= Q1D, "THREAD_DIRECT requires D1D <= Q1D");
mfem::forall_3D(NE, Q1D, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
mfem::forall_3D<T_Q1D*T_Q1D*T_Q1D>(NE,
Q1D, Q1D, Q1D,
[=] MFEM_HOST_DEVICE (int e)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
+18 -8
View File
@@ -197,15 +197,21 @@ static void EAHdivAssemble3D(const int NE,
// Assemble (one row per thread)
MFEM_FOREACH_THREAD(idx_i, x, NDOF)
{
// NOTE: due to an llvm backend bug, usage of the modulus operator
// has been removed from this foreach section.
const int ic = idx_i / NDOF_C;
const int idx_ii = idx_i % NDOF_C;
const int idx_ii = idx_i - ic * NDOF_C; // idx_i % NDOF_C
const int nx_i = (ic == 0) ? D1D : D1D-1;
const int ny_i = (ic == 1) ? D1D : D1D-1;
const int ix = idx_ii % nx_i;
const int iy = (idx_ii / nx_i) % ny_i;
const int iz = (idx_ii / nx_i) / ny_i;
const int qx_i = idx_ii / nx_i;
const int ix = idx_ii - qx_i * nx_i; // idx_ii % nx_i
const int qy_i = qx_i / ny_i;
const int iy = qx_i - qy_i * ny_i; // (idx_ii / nx_i) % ny_i
const int iz = qy_i; // (idx_ii / nx_i) / ny_i
const real_t (&Bi1)[MQ1][MD1] = (ic == 0) ? r_Bc : r_Bo;
const real_t (&Bi2)[MQ1][MD1] = (ic == 1) ? r_Bc : r_Bo;
@@ -214,14 +220,18 @@ static void EAHdivAssemble3D(const int NE,
for (int idx_j = 0; idx_j < NDOF; ++idx_j)
{
const int jc = idx_j / NDOF_C;
const int idx_jj = idx_j % NDOF_C;
const int idx_jj = idx_j - jc * NDOF_C; // idx_j % NDOF_C
const int nx_j = (jc == 0) ? D1D : D1D-1;
const int ny_j = (jc == 1) ? D1D : D1D-1;
const int jx = idx_jj % nx_j;
const int jy = (idx_jj / nx_j) % ny_j;
const int jz = (idx_jj / nx_j) / ny_j;
const int qx_j = idx_jj / nx_j;
const int jx = idx_jj - qx_j * nx_j; // idx_jj % nx_j
const int qy_j = qx_j / ny_j;
const int jy = qx_j - qy_j * ny_j; // (idx_jj / nx_j) % ny_j
const int jz = qy_j; // (idx_jj / nx_j) / ny_j
const real_t (&Bj1)[MQ1][MD1] = (jc == 0) ? r_Bc : r_Bo;
const real_t (&Bj2)[MQ1][MD1] = (jc == 1) ? r_Bc : r_Bo;
+6 -6
View File
@@ -1133,11 +1133,11 @@ inline void SmemPAMassApply3D(const int NE,
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
MFEM_VERIFY(D1D <= max_d1d, "");
MFEM_VERIFY(Q1D <= max_q1d, "");
auto b = b_.Read();
auto d = d_.Read();
auto x = x_.Read();
const auto b = b_.Read();
const auto d = d_.Read();
const auto x = x_.Read();
auto y = y_.ReadWrite();
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
{
internal::SmemPAMassApply3D_Element<T_D1D,T_Q1D>(e, NE, b, d, x, y, d1d, q1d);
});
@@ -1156,8 +1156,8 @@ inline void EAMassAssemble1D(const int NE,
const int Q1D = T_Q1D ? T_Q1D : q1d;
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
auto B = Reshape(basis.Read(), Q1D, D1D);
auto D = Reshape(padata.Read(), Q1D, NE);
const auto B = Reshape(basis.Read(), Q1D, D1D);
const auto D = Reshape(padata.Read(), Q1D, NE);
auto M = Reshape(add ? eadata.ReadWrite() : eadata.Write(), D1D, D1D, NE);
mfem::forall_2D(NE, D1D, D1D, [=] MFEM_HOST_DEVICE (int e)
{
+98 -20
View File
@@ -28,7 +28,7 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
const FaceType ftype = FaceType::Interior;
const int nf = mesh.GetNFbyType(ftype);
const Geometry::Type geom = mesh.GetFaceGeometry(0);
const Geometry::Type geom = mesh.GetTypicalFaceGeometry();
const int trial_order = trial_fes.GetMaxElementOrder();
const int test_order = test_fes.GetMaxElementOrder();
const int qorder = test_order + trial_order - 1;
@@ -47,7 +47,7 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
});
}
const FiniteElement &trial_face_el = *trial_fes.GetFaceElement(0);
const FiniteElement &trial_face_el = *trial_fes.GetTypicalTraceElement();
const auto maps = &trial_face_el.GetDofToQuad(ir, DofToQuad::TENSOR);
const int ndof_face = trial_face_el.GetDof();
@@ -72,7 +72,7 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
MFEM_ABORT("Unknown kernel.");
}
const FiniteElement &test_el = *test_fes.GetFE(0);
const FiniteElement &test_el = *test_fes.GetTypicalFE();
const int n_faces_per_el = 2*dim; // assuming tensor product
// Get all the local face maps (mapping from lexicographic face index to
// lexicographic volume index, depending on the local face index).
@@ -90,10 +90,10 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
Array<int> face_info(nf * 4);
{
int fidx = 0;
for (int f = 0; f < mesh.GetNumFaces(); ++f)
for (int f = 0; f < mesh.GetNumFacesWithGhost(); ++f)
{
Mesh::FaceInformation finfo = mesh.GetFaceInformation(f);
if (!finfo.IsInterior()) { continue; }
if (!finfo.IsInterior() || finfo.IsNonconformingCoarse()) { continue; }
face_info[0 + fidx*4] = finfo.element[0].local_face_id;
face_info[1 + fidx*4] = finfo.element[0].orientation;
face_info[2 + fidx*4] = finfo.element[1].local_face_id;
@@ -114,7 +114,7 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
else
{
d_emat = emat.Write();
mfem::forall(emat.Size(), [=] MFEM_HOST_DEVICE (int i) { d_emat[i] = 0.0; });
emat = 0.0; // Will execute on device, since Write() sets the device flag
}
const auto face_mats = Reshape(mass_emat.Read(), ndof_face, ndof_face, nf);
@@ -133,26 +133,104 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
}
};
mfem::forall_3D(nf, ndof_face, ndof_face, 2, [=] MFEM_HOST_DEVICE (int f)
auto permute_face_2 = [=] MFEM_HOST_DEVICE(int local_face_1, int local_face_2,
int orient, int size1d, int index)
{
MFEM_FOREACH_THREAD(el_i, z, 2)
if (dim == 2)
{
const int lf_i = d_face_info(0, el_i, f);
const int orient = d_face_info(1, el_i, f);
// Loop over face indices in "native ordering"
MFEM_FOREACH_THREAD(i_lex, x, ndof_face)
return internal::PermuteFace2D(local_face_1, local_face_2, orient,
size1d, index);
}
else // dim == 3
{
return internal::PermuteFace3D(local_face_1, local_face_2, orient,
size1d, index);
}
};
if (mesh.Conforming())
{
mfem::forall_3D(nf, ndof_face, ndof_face, 2, [=] MFEM_HOST_DEVICE (int f)
{
MFEM_FOREACH_THREAD(el_i, z, 2)
{
// Convert to lexicographic relative to the face itself
const int i_face = permute_face(lf_i, orient, d1d, i_lex);
// Convert from lexicographic face DOF to volume DOF
const int i = d_face_maps(i_lex, lf_i);
MFEM_FOREACH_THREAD(j, y, ndof_face)
const int lf_i = d_face_info(0, el_i, f);
const int orient = d_face_info(1, el_i, f);
// Loop over face indices in "native ordering"
MFEM_FOREACH_THREAD(i_lex, x, ndof_face)
{
el_mats(i, j, el_i, f) += face_mats(i_face, j, f);
// Convert to lexicographic relative to the face itself
const int i_face = permute_face(lf_i, orient, d1d, i_lex);
// Convert from lexicographic face DOF to volume DOF
const int i = d_face_maps(i_lex, lf_i);
MFEM_FOREACH_THREAD(j, y, ndof_face)
{
el_mats(i, j, el_i, f) += face_mats(i_face, j, f);
}
}
}
}
});
});
}
else
{
const InterpolationManager &interp =
test_fes.GetInterpolationManager(ElementDofOrdering::LEXICOGRAPHIC, ftype);
auto interp_configs = interp.GetFaceInterpConfig().Read();
const int nc_size = interp.GetNumInterpolators();
auto d_interp = Reshape(interp.GetInterpolators().Read(),
ndof_face, ndof_face, nc_size);
mfem::forall(nf, [=] MFEM_HOST_DEVICE (int f)
{
const InterpConfig conf = interp_configs[f];
const int master_side = conf.master_side;
const int interp_index = conf.index;
const int lf_0 = d_face_info(0, 0, f);
for (int el_i = 0; el_i < 2; ++el_i)
{
const int lf_i = d_face_info(0, el_i, f);
const int orient = d_face_info(1, el_i, f);
for (int j = 0; j < ndof_face; j++)
{
for (int i_lex = 0; i_lex < ndof_face; i_lex++)
{
real_t val = 0.0;
if (conf.is_non_conforming && el_i == master_side)
{
// Interpolate from el_i (coarse element) to the fine face.
// The mapping is given by d_interp, which uses indices
// relative to element 0.
// i0 is lexicographic relative to element 0
const int i0 = permute_face_2(lf_i, lf_0, orient, d1d, i_lex);
// k0 is lexicographic relative to element 0
for (int k0 = 0; k0 < ndof_face; k0++)
{
// k is relative to the face itself
const int k = permute_face(lf_0, orient, d1d, k0);
val += d_interp(k0, i0, interp_index)
* face_mats(k, j, f);
}
}
else
{
// Convert to lexicographic relative to the face itself
const int i_face = permute_face(lf_i, orient, d1d, i_lex);
val = face_mats(i_face, j, f);
}
// Convert from lexicographic face DOF to volume DOF
const int i = d_face_maps(i_lex, lf_i);
el_mats(i, j, el_i, f) += val;
}
}
}
});
}
}
}
+5 -5
View File
@@ -54,7 +54,7 @@ void SmemPAVectorDiffusionApply2D(const int NE,
const auto XE = Reshape(x.Read(), D1D, D1D, SDIM, NE);
auto YE = Reshape(y.ReadWrite(), D1D, D1D, SDIM, NE);
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
{
constexpr int MD1 = T_D1D > 0 ? SetMaxOf(T_D1D) : DofQuadLimits::MAX_T1D;
constexpr int MQ1 = T_Q1D > 0 ? SetMaxOf(T_Q1D) : DofQuadLimits::MAX_T1D;
@@ -120,7 +120,7 @@ void SmemPAVectorDiffusionApply3D(const int NE,
const auto XE = Reshape(x.Read(), D1D, D1D, D1D, SDIM, NE);
auto YE = Reshape(y.ReadWrite(), D1D, D1D, D1D, SDIM, NE);
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
{
constexpr int MD1 = T_D1D > 0 ? SetMaxOf(T_D1D) : DofQuadLimits::MAX_T1D;
constexpr int MQ1 = T_Q1D > 0 ? SetMaxOf(T_Q1D) : DofQuadLimits::MAX_T1D;
@@ -171,15 +171,15 @@ template<int DIM, int T_SDIM, int T_D1D, int T_Q1D>
VectorDiffusionIntegrator::ApplyKernelType
VectorDiffusionIntegrator::ApplyPAKernels::Kernel()
{
if (DIM == 2)
if constexpr (DIM == 2)
{
return internal::SmemPAVectorDiffusionApply2D<T_SDIM, T_D1D, T_Q1D>;
}
else if (DIM == 3)
else if constexpr (DIM == 3)
{
return internal::SmemPAVectorDiffusionApply3D<T_SDIM, T_D1D, T_Q1D>;
}
else { MFEM_ABORT("Unsupported kernel"); }
MFEM_ABORT("Unsupported kernel");
}
inline VectorDiffusionIntegrator::ApplyKernelType
+5 -5
View File
@@ -51,7 +51,7 @@ void SmemPAVectorMassApply2D(const int NE,
const auto X = Reshape(x.Read(), D1D, D1D, VDIM, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, VDIM, NE);
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
{
constexpr int MD1 = T_D1D > 0 ? SetMaxOf(T_D1D) : DofQuadLimits::MAX_T1D;
constexpr int MQ1 = T_Q1D > 0 ? SetMaxOf(T_Q1D) : DofQuadLimits::MAX_T1D;
@@ -119,7 +119,7 @@ void SmemPAVectorMassApply3D(const int NE,
const auto X = Reshape(x.Read(), D1D, D1D, D1D, VDIM, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, D1D, VDIM, NE);
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
{
constexpr int MD1 = T_D1D > 0 ? SetMaxOf(T_D1D) : DofQuadLimits::MAX_T1D;
constexpr int MQ1 = T_Q1D > 0 ? SetMaxOf(T_Q1D) : DofQuadLimits::MAX_T1D;
@@ -182,15 +182,15 @@ template<int DIM, int T_D1D, int T_Q1D>
VectorMassIntegrator::VectorMassAddMultPAType
VectorMassIntegrator::VectorMassAddMultPA::Kernel()
{
if (DIM == 2)
if constexpr (DIM == 2)
{
return internal::SmemPAVectorMassApply2D<T_D1D,T_Q1D>;
}
else if (DIM == 3)
else if constexpr (DIM == 3)
{
return internal::SmemPAVectorMassApply3D<T_D1D, T_Q1D>;
}
else { MFEM_ABORT("Unsupported kernel"); }
MFEM_ABORT("Unsupported kernel");
}
inline VectorMassIntegrator::VectorMassAddMultPAType
+6 -10
View File
@@ -301,18 +301,14 @@ template <int DIM, int T_D1D, int T_Q1D>
DomainLFIntegrator::AssembleKernelType
DomainLFIntegrator::AssembleKernels::Kernel()
{
switch (DIM)
{
case 1:
return DLFEvalAssemble1D<T_D1D, T_Q1D>;
case 2:
return DLFEvalAssemble2D<T_D1D, T_Q1D>;
case 3:
return DLFEvalAssemble3D<T_D1D, T_Q1D>;
}
if constexpr (DIM == 1) { return DLFEvalAssemble1D<T_D1D, T_Q1D>; }
if constexpr (DIM == 2) { return DLFEvalAssemble2D<T_D1D, T_Q1D>; }
if constexpr (DIM == 3) { return DLFEvalAssemble3D<T_D1D, T_Q1D>; }
MFEM_ABORT("");
}
/// \endcond DO_NOT_DOCUMENT
} // namespace mfem
#endif
#endif // MFEM_LININTEG_DOMAIN_KERNELS_HPP
+811 -327
View File
File diff suppressed because it is too large Load Diff
+63 -64
View File
@@ -43,56 +43,52 @@ public:
index = i;
}
void Set3w(const real_t x1, const real_t x2, const real_t x3, const real_t w)
{ x = x1; y = x2; z = x3; weight = w; }
void Set2w(const real_t x1, const real_t x2, const real_t w)
{ x = x1; y = x2; weight = w; }
void Set1w(const real_t x1, const real_t w)
{ x = x1; weight = w; }
void Set3w(const real_t *p) { Set3w(p[0], p[1], p[2], p[3]); }
void Set2w(const real_t *p) { Set2w(p[0], p[1], p[2]); }
void Set1w(const real_t *p) { Set1w(p[0], p[1]); }
void Set3(const real_t x1, const real_t x2, const real_t x3)
{ x = x1; y = x2; z = x3; }
void Set2(const real_t x1, const real_t x2)
{ x = x1; y = x2; }
void Set1(const real_t x1)
{ x = x1; }
void Set3(const real_t *p) { Set3(p[0], p[1], p[2]); }
void Set2(const real_t *p) { Set2(p[0], p[1]); }
void Set1(const real_t *p) { Set1(p[0]); }
void Set(const real_t x1, const real_t x2, const real_t x3, const real_t w)
{ Set3w(x1, x2, x3, w); }
void Set(const real_t *p, const int dim)
{
MFEM_ASSERT(1 <= dim && dim <= 3, "invalid dim: " << dim);
x = p[0];
if (dim > 1)
switch (dim)
{
y = p[1];
if (dim > 2)
{
z = p[2];
}
case 3: Set3(p); break;
case 2: Set2(p); break;
case 1: Set1(p); break;
}
}
void Get(real_t *p, const int dim) const
{
MFEM_ASSERT(1 <= dim && dim <= 3, "invalid dim: " << dim);
p[0] = x;
if (dim > 1)
switch (dim)
{
p[1] = y;
if (dim > 2)
{
p[2] = z;
}
case 3: p[2] = z;
case 2: p[1] = y;
case 1: p[0] = x;
}
}
void Set(const real_t x1, const real_t x2, const real_t x3, const real_t w)
{ x = x1; y = x2; z = x3; weight = w; }
void Set3w(const real_t *p) { x = p[0]; y = p[1]; z = p[2]; weight = p[3]; }
void Set3(const real_t x1, const real_t x2, const real_t x3)
{ x = x1; y = x2; z = x3; }
void Set3(const real_t *p) { x = p[0]; y = p[1]; z = p[2]; }
void Set2w(const real_t x1, const real_t x2, const real_t w)
{ x = x1; y = x2; weight = w; }
void Set2w(const real_t *p) { x = p[0]; y = p[1]; weight = p[2]; }
void Set2(const real_t x1, const real_t x2) { x = x1; y = x2; }
void Set2(const real_t *p) { x = p[0]; y = p[1]; }
void Set1w(const real_t x1, const real_t w) { x = x1; weight = w; }
void Set1w(const real_t *p) { x = p[0]; weight = p[1]; }
};
/// Class for an integration rule - an Array of IntegrationPoint.
@@ -125,18 +121,6 @@ private:
void AddTriPoints3b(const int off, const real_t b, const real_t weight)
{ AddTriPoints3(off, (1. - b)/2., b, weight); }
void AddTriPoints3R(const int off, const real_t a, const real_t b,
const real_t c, const real_t weight)
{
IntPoint(off + 0).Set2w(a, b, weight);
IntPoint(off + 1).Set2w(c, a, weight);
IntPoint(off + 2).Set2w(b, c, weight);
}
void AddTriPoints3R(const int off, const real_t a, const real_t b,
const real_t weight)
{ AddTriPoints3R(off, a, b, 1. - a - b, weight); }
void AddTriPoints6(const int off, const real_t a, const real_t b,
const real_t c, const real_t weight)
{
@@ -183,14 +167,6 @@ private:
AddTetPoints3(off + 1, a, 1. - 3.*a, weight);
}
// given b, add the permutations of (a,a,a,b), where 3*a + b = 1
void AddTetPoints4b(const int off, const real_t b, const real_t weight)
{
const real_t a = (1. - b)/3.;
IntPoint(off).Set(a, a, a, weight);
AddTetPoints3(off + 1, a, b, weight);
}
// add the permutations of (a,a,b,b), 2*(a + b) = 1
void AddTetPoints6(const int off, const real_t a, const real_t weight)
{
@@ -209,14 +185,37 @@ private:
AddTetPoints6(off + 6, a, bc, cb, weight);
}
// given (b,c), add the permutations of (a,a,b,c), 2*a + b + c = 1
void AddTetPoints12bc(const int off, const real_t b, const real_t c,
const real_t weight)
// add all 24 permutations of (a,b,c,d) where a+b+c+d = 1, all distinct
void AddTetPoints24(const int off, const real_t a, const real_t b,
const real_t c, const real_t weight)
{
const real_t a = (1. - b - c)/2.;
AddTetPoints3(off, a, b, weight);
AddTetPoints3(off + 3, a, c, weight);
AddTetPoints6(off + 6, a, b, c, weight);
const real_t d = 1. - a - b - c;
// all 24 permutations of 4 distinct barycentric coordinates
// permuting which coordinate goes to x, y, z (4th is 1-x-y-z)
IntPoint(off + 0).Set(a, b, c, weight);
IntPoint(off + 1).Set(a, b, d, weight);
IntPoint(off + 2).Set(a, c, b, weight);
IntPoint(off + 3).Set(a, c, d, weight);
IntPoint(off + 4).Set(a, d, b, weight);
IntPoint(off + 5).Set(a, d, c, weight);
IntPoint(off + 6).Set(b, a, c, weight);
IntPoint(off + 7).Set(b, a, d, weight);
IntPoint(off + 8).Set(b, c, a, weight);
IntPoint(off + 9).Set(b, c, d, weight);
IntPoint(off + 10).Set(b, d, a, weight);
IntPoint(off + 11).Set(b, d, c, weight);
IntPoint(off + 12).Set(c, a, b, weight);
IntPoint(off + 13).Set(c, a, d, weight);
IntPoint(off + 14).Set(c, b, a, weight);
IntPoint(off + 15).Set(c, b, d, weight);
IntPoint(off + 16).Set(c, d, a, weight);
IntPoint(off + 17).Set(c, d, b, weight);
IntPoint(off + 18).Set(d, a, b, weight);
IntPoint(off + 19).Set(d, a, c, weight);
IntPoint(off + 20).Set(d, b, a, weight);
IntPoint(off + 21).Set(d, b, c, weight);
IntPoint(off + 22).Set(d, c, a, weight);
IntPoint(off + 23).Set(d, c, b, weight);
}
public:
+3 -31
View File
@@ -14,6 +14,7 @@
#include "../config/config.hpp"
#include "kernel_reporter.hpp"
#include "../general/hash_util.hpp"
#include <unordered_map>
#include <tuple>
#include <type_traits>
@@ -86,35 +87,6 @@ namespace mfem
} \
}
/// @brief Hashes variadic packs for which each type contained in the variadic
/// pack has a specialization of `std::hash` available.
///
/// For example, packs containing int, bool, enum values, etc.
template<typename ...KernelParameters>
struct KernelDispatchKeyHash
{
private:
template<int N>
size_t operator()(std::tuple<KernelParameters...> value) const { return 0; }
// The hashing formula here is taken directly from the Boost library, with
// the magic number 0x9e3779b9 chosen to minimize hashing collisions.
template<std::size_t N, typename THead, typename... TTail>
size_t operator()(std::tuple<KernelParameters...> value) const
{
constexpr int Index = N - sizeof...(TTail) - 1;
auto lhs_hash = std::hash<THead>()(std::get<Index>(value));
auto rhs_hash = operator()<N, TTail...>(value);
return lhs_hash^(rhs_hash + 0x9e3779b9 + (lhs_hash<<6) + (lhs_hash>>2));
}
public:
/// Returns the hash of the given @a value.
size_t operator()(std::tuple<KernelParameters...> value) const
{
return operator()<sizeof...(KernelParameters),KernelParameters...>(value);
}
};
namespace internal { template<typename... Types> struct KernelTypeList { }; }
template<typename... T> class KernelDispatchTable { };
@@ -128,8 +100,8 @@ class KernelDispatchTable<Kernels,
internal::KernelTypeList<Params...>,
internal::KernelTypeList<OptParams...>>
{
using TableType = std::unordered_map<std::tuple<Params...>,
Signature, KernelDispatchKeyHash<Params...>>;
using TableType =
std::unordered_map<std::tuple<Params...>, Signature, TupleHasher>;
TableType table;
/// @brief Call function @a f with arguments @a args (perfect forwaring).
+3 -1
View File
@@ -297,7 +297,8 @@ void LinearForm::Assemble()
tr = mesh->GetBdrFaceTransformations(i);
if (tr != NULL)
{
fes -> GetElementVDofs (tr -> Elem1No, vdofs);
mfem::DofTransformation doftrans;
fes -> GetElementVDofs (tr -> Elem1No, vdofs, doftrans);
for (int k = 0; k < boundary_face_integs.Size(); k++)
{
if (boundary_face_integs_marker[k] &&
@@ -307,6 +308,7 @@ void LinearForm::Assemble()
boundary_face_integs[k]->
AssembleRHSElementVect(*fes->GetFE(tr->Elem1No),
*tr, elemvect);
doftrans.TransformDual(elemvect);
AddElementVector (vdofs, elemvect);
}
}
+2 -2
View File
@@ -164,8 +164,8 @@ private:
public:
/// Constructs the domain integrator $ (Q, \nabla v) $
DomainLFGradIntegrator(VectorCoefficient &QF)
: DeltaLFIntegrator(QF), Q(QF) { }
DomainLFGradIntegrator(VectorCoefficient &QF, const IntegrationRule *ir = NULL)
: DeltaLFIntegrator(QF, ir), Q(QF) { }
bool SupportsDevice() const override { return true; }
+6 -5
View File
@@ -158,15 +158,16 @@ void LORBase::ConstructLocalDofPermutation(Array<int> &perm_) const
int i;
i = dofmap_lor[off_lor + i1 + i2*2];
int s1 = i < 0 ? -1 : 1;
int idof_lor = vdof_lor[absdof(i)];
int idof_lor = vdof_lor[UnsignIndex(i)];
i = dofmap_ho[off_ho + i1*n1 + i2*n2];
int s2 = i < 0 ? -1 : 1;
int idof_ho = vdof_ho[absdof(i)];
int idof_ho = vdof_ho[UnsignIndex(i)];
int s3 = idof_lor < 0 ? -1 : 1;
int s4 = idof_ho < 0 ? -1 : 1;
int s = s1*s2*s3*s4;
i = absdof(idof_ho);
perm_[absdof(idof_lor)] = s < 0 ? -1-absdof(i) : absdof(i);
i = UnsignIndex(idof_ho);
perm_[UnsignIndex(idof_lor)] = s < 0 ? -1-UnsignIndex(i) :
UnsignIndex(i);
}
}
};
@@ -232,7 +233,7 @@ void LORBase::ConstructDofPermutation() const
int j = l_perm[i];
int s = j < 0 ? -1 : 1;
int t_i = pfes_lor->GetLocalTDofNumber(i);
int t_j = pfes_ho->GetLocalTDofNumber(absdof(j));
int t_j = pfes_ho->GetLocalTDofNumber(UnsignIndex(j));
// Either t_i and t_j both -1, or both non-negative
if ((t_i < 0 && t_j >=0) || (t_j < 0 && t_i >= 0))
{
-2
View File
@@ -57,8 +57,6 @@ private:
/// values (after temporarily changing them for LOR assembly).
void ResetIntegrationRules(GetIntegratorsFn get_integrators);
static inline int absdof(int i) { return i < 0 ? -1-i : i; }
protected:
enum FESpaceType { H1, ND, RT, L2, INVALID };
+1 -4
View File
@@ -78,10 +78,7 @@ template <int Dim>
void BuildBoxes(const Mesh &mesh,
std::vector<::moonolith::AABB<Dim, double>> &element_boxes)
{
#ifndef NDEBUG
const int dim = mesh.Dimension();
assert(dim == Dim);
#endif
MFEM_ASSERT(mesh.Dimension() == Dim, "Mesh and box dimensions mismatched");
element_boxes.resize(mesh.GetNE());
DenseMatrix pts;
+9 -3
View File
@@ -488,10 +488,16 @@ void ParBilinearForm::FormLinearSystem(
R.Mult(x, true_X);
FormSystemMatrix(ess_tdof_list, A);
ConstrainedOperator *A_constrained;
Operator::FormConstrainedSystemOperator(ess_tdof_list, A_constrained);
std::unique_ptr<ConstrainedOperator> A_constrained([&]()
{
Operator *op;
Operator::FormSystemOperator(ess_tdof_list, op);
return dynamic_cast<ConstrainedOperator*>(op);
}());
MFEM_ASSERT(A_constrained != nullptr, "");
A_constrained->EliminateRHS(true_X, true_B);
delete A_constrained;
R.MultTranspose(true_B, b);
hybridization->ReduceRHS(true_B, B);
X.SetSize(B.Size());
+49 -56
View File
@@ -424,7 +424,7 @@ void ParFiniteElementSpace::GetGroupComm(
{
if (ind[l] < 0)
{
dofs[l] = m + (-1-ind[l]);
dofs[l] = m + FlipIndexSign(ind[l]);
if (g_ldof_sign)
{
(*g_ldof_sign)[dofs[l]] = -1;
@@ -462,7 +462,7 @@ void ParFiniteElementSpace::GetGroupComm(
{
if (ind[l] < 0)
{
dofs[l] = m + (-1-ind[l]);
dofs[l] = m + FlipIndexSign(ind[l]);
if (g_ldof_sign)
{
(*g_ldof_sign)[dofs[l]] = -1;
@@ -500,7 +500,7 @@ void ParFiniteElementSpace::GetGroupComm(
{
if (ind[l] < 0)
{
dofs[l] = m + (-1-ind[l]);
dofs[l] = m + FlipIndexSign(ind[l]);
if (g_ldof_sign)
{
(*g_ldof_sign)[dofs[l]] = -1;
@@ -538,16 +538,16 @@ void ParFiniteElementSpace::ApplyLDofSigns(Array<int> &dofs) const
{
if (dofs[i] < 0)
{
if (ldof_sign[-1-dofs[i]] < 0)
if (ldof_sign[FlipIndexSign(dofs[i])] < 0)
{
dofs[i] = -1-dofs[i];
dofs[i] = FlipIndexSign(dofs[i]);
}
}
else
{
if (ldof_sign[dofs[i]] < 0)
{
dofs[i] = -1-dofs[i];
dofs[i] = FlipIndexSign(dofs[i]);
}
}
}
@@ -646,39 +646,38 @@ const FaceRestriction *ParFiniteElementSpace::GetFaceRestriction(
auto itr = L2F.find(key);
if (itr != L2F.end())
{
return itr->second;
return itr->second.get();
}
else
{
FaceRestriction *res;
std::unique_ptr<FaceRestriction> res;
if (is_dg_space)
{
if (Conforming())
{
res = new ParL2FaceRestriction(*this, f_ordering, type, m);
res.reset(new ParL2FaceRestriction(*this, f_ordering, type, m));
}
else
{
res = new ParNCL2FaceRestriction(*this, f_ordering, type, m);
res.reset(new ParNCL2FaceRestriction(*this, f_ordering, type, m));
}
}
else if (dynamic_cast<const DG_Interface_FECollection*>(fec))
{
res = new L2InterfaceFaceRestriction(*this, f_ordering, type);
res.reset(new L2InterfaceFaceRestriction(*this, f_ordering, type));
}
else
{
if (Conforming())
{
res = new ConformingFaceRestriction(*this, f_ordering, type);
res.reset(new ConformingFaceRestriction(*this, f_ordering, type));
}
else
{
res = new ParNCH1FaceRestriction(*this, f_ordering, type);
res.reset(new ParNCH1FaceRestriction(*this, f_ordering, type));
}
}
L2F[key] = res;
return res;
return L2F.emplace(key, std::move(res)).first->second.get();
}
}
@@ -700,7 +699,8 @@ void ParFiniteElementSpace::GetSharedEdgeDofs(
for (int i = 0; i < dofs.Size(); i++)
{
const int di = dofs[i];
dofs[i] = (di >= 0) ? rdofs[di] : -1-rdofs[-1-di];
dofs[i] = di >= 0 ? rdofs[di] :
FlipIndexSign(rdofs[FlipIndexSign(di)]);
}
}
}
@@ -724,7 +724,8 @@ void ParFiniteElementSpace::GetSharedTriangleDofs(
for (int i = 0; i < dofs.Size(); i++)
{
const int di = dofs[i];
dofs[i] = (di >= 0) ? rdofs[di] : -1-rdofs[-1-di];
dofs[i] = di >= 0 ? rdofs[di] :
FlipIndexSign(rdofs[FlipIndexSign(di)]);
}
}
}
@@ -748,7 +749,8 @@ void ParFiniteElementSpace::GetSharedQuadrilateralDofs(
for (int i = 0; i < dofs.Size(); i++)
{
const int di = dofs[i];
dofs[i] = (di >= 0) ? rdofs[di] : -1-rdofs[-1-di];
dofs[i] = (di >= 0) ? rdofs[di] :
FlipIndexSign(rdofs[FlipIndexSign(di)]);
}
}
}
@@ -1488,7 +1490,7 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
GetElementVDofs(my_elems[i], ldofs);
for (int j = 0; j < ldofs.Size(); j++)
{
int ldof = (ldofs[j] >= 0 ? ldofs[j] : -1-ldofs[j]);
int ldof = UnsignIndex(ldofs[j]);
if (ldof_marker[ldof] != fn)
{
@@ -1549,7 +1551,7 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
GetElementVDofs(my_elems[i], ldofs);
for (int j = 0; j < ldofs.Size(); j++)
{
int ldof = (ldofs[j] >= 0 ? ldofs[j] : -1-ldofs[j]);
int ldof = UnsignIndex(ldofs[j]);
if (ldof_marker[ldof] != fn)
{
@@ -1574,14 +1576,15 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
for (int i = 0; i < num_ldofs; i++)
{
int ldof = (ldofs_fn[i] >= 0 ? ldofs_fn[i] : -1-ldofs_fn[i]);
int ldof = UnsignIndex(ldofs_fn[i]);
ldof_marker[ldof] = i;
}
for ( ; j < j_end; j++)
{
int ldof = (send_J[j] >= 0 ? send_J[j] : -1-send_J[j]);
send_J[j] = (send_J[j] >= 0 ? ldof_marker[ldof] : -1-ldof_marker[ldof]);
const int ldof = UnsignIndex(send_J[j]);
send_J[j] = (send_J[j] >= 0 ? ldof_marker[ldof] :
FlipIndexSign(ldof_marker[ldof]));
}
}
@@ -1673,12 +1676,7 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
{
for (int j_end = face_nbr_ldof.GetI()[fn+1]; j < j_end; j++)
{
int ldof = face_nbr_ldof.GetJ()[j];
if (ldof < 0)
{
ldof = -1-ldof;
}
const int ldof = UnsignIndex(face_nbr_ldof.GetJ()[j]);
face_nbr_glob_dof_map[j] = dof_face_nbr_offsets[fn] + ldof;
}
}
@@ -1722,7 +1720,7 @@ void ParFiniteElementSpace::GetFaceNbrFaceVDofs(int i, Array<int> &vdofs) const
MFEM_ASSERT(Nonconforming() && i >= pmesh->GetNumFaces(), "");
int el1, el2, inf1, inf2;
pmesh->GetFaceElements(i, &el1, &el2);
el2 = -1 - el2;
el2 = FlipIndexSign(el2);
pmesh->GetFaceInfos(i, &inf1, &inf2);
MFEM_ASSERT(0 <= el2 && el2 < face_nbr_element_dof.Size(), "");
const int nd = face_nbr_element_dof.RowSize(el2);
@@ -1738,7 +1736,8 @@ void ParFiniteElementSpace::GetFaceNbrFaceVDofs(int i, Array<int> &vdofs) const
for (int j = 0; j < vdofs.Size(); j++)
{
const int ldof = vdofs[j];
vdofs[j] = (ldof >= 0) ? vol_vdofs[ldof] : -1-vol_vdofs[-1-ldof];
vdofs[j] = (ldof >= 0) ? vol_vdofs[ldof] :
FlipIndexSign(vol_vdofs[FlipIndexSign(ldof)]);
}
}
@@ -2062,8 +2061,8 @@ void ParFiniteElementSpace::GetGhostFaceDofs(const MeshId &face_id,
for (int j = 0; j < ne; j++)
{
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j])
/* */ : (-1 - (first + (-1 - ind[j])));
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j]) :
FlipIndexSign(first + FlipIndexSign(ind[j]));
}
}
else
@@ -2073,8 +2072,8 @@ void ParFiniteElementSpace::GetGhostFaceDofs(const MeshId &face_id,
const int *ind = fec->DofOrderForOrientation(Geometry::SEGMENT, Eo[i]);
for (int j = 0; j < ne; j++)
{
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j])
/* */ : (-1 - (first + (-1 - ind[j])));
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j]) :
FlipIndexSign(first + FlipIndexSign(ind[j]));
}
}
}
@@ -2867,7 +2866,7 @@ void NeighborRowMessage::Encode(int rank)
if (ind && (edof = ind[edof]) < 0)
{
edof = -1 - edof;
edof = FlipIndexSign(edof);
s = -1;
}
@@ -3068,10 +3067,10 @@ void NeighborRowMessage::Decode(int rank)
// If edof arrived with a negative index, flip it, and the scaling.
real_t s = (edof < 0) ? -1.0 : 1.0;
edof = (edof < 0) ? -1 - edof : edof;
edof = UnsignIndex(edof);
if (ind && (edof = ind[edof]) < 0)
{
edof = -1 - edof;
edof = FlipIndexSign(edof);
s *= -1.0;
}
@@ -3122,10 +3121,10 @@ void NeighborRowMessage::Decode(int rank)
// If edof arrived with a negative index, flip it, and the scaling.
s = (edof < 0) ? -1.0 : 1.0;
edof = (edof < 0) ? -1 - edof : edof;
edof = UnsignIndex(edof);
if (ind && (edof = ind[edof]) < 0)
{
edof = -1 - edof;
edof = FlipIndexSign(edof);
s *= -1.0;
}
@@ -4406,12 +4405,9 @@ ParFiniteElementSpace::RebalanceMatrix(int old_ndofs,
{
for (int j = 0; j < dofs.Size(); j++)
{
int row = DofToVDof(dofs[j], vd);
if (row < 0) { row = -1 - row; }
int col = DofToVDof(old_dofs[j], vd, old_ndofs);
if (col < 0) { col = -1 - col; }
const int row = UnsignIndex(DofToVDof(dofs[j], vd));
const int col = UnsignIndex(DofToVDof(old_dofs[j], vd,
old_ndofs));
i_diag[row] = col;
}
}
@@ -4436,9 +4432,7 @@ ParFiniteElementSpace::RebalanceMatrix(int old_ndofs,
{
for (int j = 0; j < dofs.Size(); j++)
{
int row = DofToVDof(dofs[j], vd);
if (row < 0) { row = -1 - row; }
const int row = UnsignIndex(DofToVDof(dofs[j], vd));
if (i_diag[row] == i_diag[row+1]) // diag row empty?
{
i_offd[row] = old_dofs[j + vd * dofs.Size()];
@@ -4547,9 +4541,9 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
{
const Embedding &emb = dtrans.embeddings[k];
int fine_rank = old_ranks[k];
int coarse_rank = (emb.parent < 0) ? (-1 - emb.parent)
: old_pncmesh->ElementRank(emb.parent);
const int fine_rank = old_ranks[k];
const int coarse_rank = (emb.parent < 0) ? FlipIndexSign(emb.parent)
: old_pncmesh->ElementRank(emb.parent);
if (coarse_rank != MyRank && fine_rank == MyRank)
{
@@ -4637,8 +4631,8 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
{
if (!std::isfinite(lR(i, 0))) { continue; }
int r = DofToVDof(dofs[i], vd);
int m = (r >= 0) ? r : (-1 - r);
const int r = DofToVDof(dofs[i], vd);
const int m = UnsignIndex(r);
if (is_dg || !mark[m])
{
@@ -4687,8 +4681,7 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
{
if (!std::isfinite(lR(i, 0))) { continue; }
int r = DofToVDof(dofs[i], vd);
int m = (r >= 0) ? r : (-1 - r);
const int m = UnsignIndex(DofToVDof(dofs[i], vd));
if (is_dg || !mark[m])
{
+2
View File
@@ -483,6 +483,8 @@ public:
const FiniteElement *GetFaceNbrFaceFE(int i) const;
const Array<HYPRE_BigInt> &GetFaceNbrGlobalDofMapArray() { return face_nbr_glob_dof_map; }
const HYPRE_BigInt *GetFaceNbrGlobalDofMap() { return face_nbr_glob_dof_map; }
const Array<HYPRE_BigInt> &GetFaceNbrGlobalDofMapArray() const
{ return face_nbr_glob_dof_map; }
ElementTransformation *GetFaceNbrElementTransformation(int i) const
{ return pmesh->GetFaceNbrElementTransformation(i); }

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