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e3cfc28718 |
@@ -25,7 +25,7 @@ runs:
|
||||
steps:
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
|
||||
- uses: actions/cache@v4
|
||||
- uses: actions/cache@v5
|
||||
if: ${{env.DEBUG == 'true'}}
|
||||
id: debug
|
||||
with:
|
||||
|
||||
@@ -36,7 +36,7 @@ runs:
|
||||
steps:
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
|
||||
- uses: actions/cache@v4
|
||||
- uses: actions/cache@v5
|
||||
if: ${{env.DEBUG == 'true' && inputs.cache-skip != 'true'}}
|
||||
id: debug
|
||||
with:
|
||||
|
||||
@@ -23,7 +23,7 @@ inputs:
|
||||
runs:
|
||||
using: 'composite'
|
||||
steps:
|
||||
- uses: actions/cache/restore@v4 # Cache for LLVM libcxx
|
||||
- uses: actions/cache/restore@v5 # Cache for LLVM libcxx
|
||||
with:
|
||||
path: ${{env.LLVM_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
@@ -32,14 +32,14 @@ runs:
|
||||
- uses: ./.github/actions/sanitize/mpi
|
||||
if: ${{inputs.par == 'true'}}
|
||||
|
||||
- uses: actions/cache/restore@v4 # Cache for Hypre
|
||||
- uses: actions/cache/restore@v5 # Cache for Hypre
|
||||
if: ${{inputs.par == 'true'}}
|
||||
with:
|
||||
path: ${{env.HYPRE_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
|
||||
|
||||
- uses: actions/cache/restore@v4 # Cache for Metis
|
||||
- uses: actions/cache/restore@v5 # Cache for Metis
|
||||
if: ${{inputs.par == 'true'}}
|
||||
with:
|
||||
path: ${{env.METIS_DIR}}
|
||||
@@ -51,13 +51,13 @@ runs:
|
||||
run: ln -s -f ${{env.HYPRE_DIR}} hypre && ln -s -f ${{env.METIS_DIR}} metis-4.0
|
||||
shell: bash
|
||||
|
||||
- uses: actions/cache/restore@v4 # Cache for LSAN suppression file
|
||||
- uses: actions/cache/restore@v5 # Cache for LSAN suppression file
|
||||
with:
|
||||
path: ${{env.LSAN_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
key: build-lsan-suppression-file
|
||||
|
||||
- uses: actions/checkout@v4 # Checkout the repository
|
||||
- uses: actions/checkout@v6 # Checkout the repository
|
||||
with:
|
||||
path: mfem
|
||||
# ref: ${{env.BRANCH}}
|
||||
|
||||
@@ -43,7 +43,7 @@ jobs:
|
||||
remove-docker-images: 'true'
|
||||
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
# It's easier to reference named variables than indexes of the matrix
|
||||
- name: Set Environment
|
||||
|
||||
@@ -153,7 +153,7 @@ jobs:
|
||||
# /home/runner/work/mfem/mfem/mfem
|
||||
# Note: Done now to access "install-hypre" and "install-metis" actions.
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
with:
|
||||
path: ${{ env.MFEM_TOP_DIR }}
|
||||
# Fetch the complete history for codecov to access commits ID
|
||||
@@ -225,7 +225,7 @@ jobs:
|
||||
- name: cache hypre
|
||||
id: hypre-cache
|
||||
if: matrix.mpi == 'par'
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-v2.5
|
||||
@@ -255,7 +255,7 @@ jobs:
|
||||
- name: cache metis
|
||||
id: metis-cache
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
|
||||
@@ -270,7 +270,7 @@ jobs:
|
||||
- name: cache vcpkg (Windows)
|
||||
id: vcpkg-cache
|
||||
if: matrix.os == 'windows-latest'
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: vcpkg_cache
|
||||
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
|
||||
@@ -295,7 +295,8 @@ jobs:
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew update
|
||||
brew install enzyme
|
||||
ENZYME_LLVM=$(brew info enzyme | sed -n 's/^Required:.*\(llvm[^ ]*\).*/\1/p')
|
||||
ENZYME_LLVM=$(brew info enzyme | sed -n 's/^Required.*:.*\(llvm[^ ]*\).*/\1/p')
|
||||
echo "ENZYME_LLVM=$ENZYME_LLVM"
|
||||
LLVM_PREFIX=$(brew --prefix $ENZYME_LLVM)
|
||||
echo "LLVM_PREFIX=$LLVM_PREFIX" >> $GITHUB_ENV
|
||||
echo "OMPI_CC=$LLVM_PREFIX/bin/clang" >> $GITHUB_ENV
|
||||
|
||||
@@ -40,11 +40,11 @@ jobs:
|
||||
|
||||
steps:
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
# Initializes the CodeQL tools for scanning.
|
||||
- name: Initialize CodeQL
|
||||
uses: github/codeql-action/init@v2
|
||||
uses: github/codeql-action/init@v4
|
||||
with:
|
||||
languages: ${{ matrix.language }}
|
||||
# If you wish to specify custom queries, you can do so here or in a config file.
|
||||
@@ -57,7 +57,7 @@ jobs:
|
||||
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
|
||||
# If this step fails, then you should remove it and run the build manually (see below)
|
||||
- name: Autobuild
|
||||
uses: github/codeql-action/autobuild@v2
|
||||
uses: github/codeql-action/autobuild@v4
|
||||
|
||||
# ℹ️ Command-line programs to run using the OS shell.
|
||||
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
|
||||
@@ -70,4 +70,4 @@ jobs:
|
||||
# ./location_of_script_within_repo/buildscript.sh
|
||||
|
||||
- name: Perform CodeQL Analysis
|
||||
uses: github/codeql-action/analyze@v2
|
||||
uses: github/codeql-action/analyze@v4
|
||||
|
||||
@@ -39,7 +39,7 @@ jobs:
|
||||
|
||||
steps:
|
||||
- name: checkout MFEM
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
@@ -50,7 +50,7 @@ jobs:
|
||||
|
||||
- name: Cache Hypre Install
|
||||
id: hypre-cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-v2.5
|
||||
@@ -65,7 +65,7 @@ jobs:
|
||||
|
||||
- name: Cache Metis Install
|
||||
id: metis-cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
|
||||
|
||||
@@ -38,7 +38,7 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
- name: copyright check
|
||||
id: copyright
|
||||
@@ -93,7 +93,7 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
- name: get astyle
|
||||
run: |
|
||||
@@ -110,7 +110,7 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
- name: get doxygen and graphviz
|
||||
run: |
|
||||
@@ -135,7 +135,7 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
|
||||
@@ -17,11 +17,11 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
name: 2.19.0
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{env.HYPRE_DIR}}
|
||||
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
|
||||
|
||||
@@ -27,13 +27,13 @@ jobs:
|
||||
llvm_use_sanitizer: "Undefined"
|
||||
name: ${{matrix.sanitizer}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
with:
|
||||
NO_FLAGS: true
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{env.LLVM_DIR}}
|
||||
key: build-libcxx-${{env.LLVM_VER}}-${{matrix.sanitizer}}
|
||||
|
||||
@@ -17,11 +17,11 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
name: lsan.supp
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{env.LSAN_DIR}}
|
||||
key: build-lsan-suppression-file
|
||||
|
||||
@@ -17,11 +17,11 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
name: 4.0.3
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{env.METIS_DIR}}
|
||||
key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
|
||||
|
||||
@@ -28,7 +28,7 @@ jobs:
|
||||
build:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/mfem
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
@@ -40,7 +40,7 @@ jobs:
|
||||
env:
|
||||
ex: ${{inputs.par && 'ex1p' || 'ex1'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -58,7 +58,7 @@ jobs:
|
||||
env:
|
||||
exclude: ${{inputs.par && '-E "_ser"' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -82,7 +82,7 @@ jobs:
|
||||
env:
|
||||
exclude: ${{inputs.par && '-E "_ser"' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -107,7 +107,7 @@ jobs:
|
||||
run: ${{inputs.par && '-R "_cpu_np"' || ''}}
|
||||
exclude: ${{inputs.par && '"unit_tests|debug"' || '"^unit_tests$|debug"'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -131,7 +131,7 @@ jobs:
|
||||
env:
|
||||
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -165,7 +165,7 @@ jobs:
|
||||
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
|
||||
np: ${{inputs.par && '_np=2' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
|
||||
@@ -144,6 +144,8 @@ examples/amgx/sol.gf
|
||||
examples/amgx/mesh.*
|
||||
examples/amgx/sol.*
|
||||
|
||||
examples/dfem/minimal_surface
|
||||
|
||||
examples/caliper/ex1
|
||||
examples/caliper/ex1p
|
||||
examples/caliper/refined.mesh
|
||||
@@ -443,6 +445,10 @@ miniapps/diag-smoothers/mg-abs-l1-jacobi
|
||||
miniapps/contact/contact
|
||||
miniapps/contact/ParaView
|
||||
|
||||
miniapps/plasma/pic/electrostatic-*
|
||||
!miniapps/plasma/pic/electrostatic-*.cpp
|
||||
miniapps/plasma/pic/*.csv
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
|
||||
@@ -8,6 +8,22 @@
|
||||
https://mfem.org
|
||||
|
||||
|
||||
Version 4.10 (development)
|
||||
==========================
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Replaced legacy simplex quadrature rules with symmetric positive-weight
|
||||
rules for triangles (orders 0-25) and tetrahedra (orders 0-20). These
|
||||
rules guarantee all-positive weights and interior quadrature points,
|
||||
improving numerical stability. Higher orders fall back to Grundmann-Moller.
|
||||
Triangle rules: Witherden & Vincent, Comput. Math. Appl. 69(10):1232-1241,
|
||||
2015.
|
||||
Tet rules (d=1-13): Witherden & Vincent (ibid).
|
||||
Tet rules (d=14-20): Chuluunbaatar et al., Comput. Math. Appl. 124:89-97,
|
||||
2022.
|
||||
|
||||
|
||||
Version 4.9.1 (development)
|
||||
===========================
|
||||
|
||||
|
||||
+22
-1
@@ -592,6 +592,13 @@ if (MFEM_USE_ENZYME)
|
||||
set(ENZYME_INCLUDE_DIRS ${ENZYME_DIR}/include)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_PROTEUS)
|
||||
enable_language(C)
|
||||
find_package(proteus REQUIRED PATHS "${PROTEUS_DIR}")
|
||||
message(STATUS "${PROTEUS_DIR}/include")
|
||||
include_directories("${PROTEUS_DIR}/include")
|
||||
endif()
|
||||
|
||||
# MFEM_TIMER_TYPE
|
||||
if (NOT DEFINED MFEM_TIMER_TYPE)
|
||||
if (APPLE)
|
||||
@@ -652,6 +659,8 @@ foreach(TPL IN LISTS MFEM_TPLS)
|
||||
endif()
|
||||
endforeach(TPL)
|
||||
|
||||
# reverse to remove the first instance of entries in TPL_LIBRARIES
|
||||
# so later duplicates are kept (for dependency ordering)
|
||||
list(REVERSE TPL_LIBRARIES)
|
||||
list(REMOVE_DUPLICATES TPL_LIBRARIES)
|
||||
list(REVERSE TPL_LIBRARIES)
|
||||
@@ -726,6 +735,16 @@ mfem_add_library(mfem ${SOURCES} ${HEADERS} ${MASTER_HEADERS})
|
||||
target_compile_features(mfem PUBLIC cxx_std_${CMAKE_CXX_STANDARD})
|
||||
# message(STATUS "TPL_LIBRARIES = ${TPL_LIBRARIES}")
|
||||
target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES} ${TPL_TARGETS})
|
||||
|
||||
if (MFEM_USE_PROTEUS)
|
||||
add_library(ClangProteusFlags INTERFACE IMPORTED)
|
||||
set_target_properties(ClangProteusFlags PROPERTIES
|
||||
INTERFACE_COMPILE_OPTIONS "-fpass-plugin=$<TARGET_FILE:ProteusPass>"
|
||||
)
|
||||
target_link_libraries(mfem PUBLIC ClangProteusFlags)
|
||||
target_link_libraries(mfem PUBLIC proteus)
|
||||
endif()
|
||||
|
||||
if (TPL_TARGETS)
|
||||
add_dependencies(mfem ${TPL_TARGETS})
|
||||
endif()
|
||||
@@ -1015,5 +1034,7 @@ install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/data
|
||||
# Create 'config.mk' from 'config.mk.in' for the build and install locations and
|
||||
# define install rules for 'config.mk' and 'test.mk'
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
if (MFEM_USE_CUDA OR MFEM_USE_HIP)
|
||||
option(MFEM_EXPORT_GPU_CONFIG "Export config.mk for GPU-enabled downstream packages" ON)
|
||||
endif()
|
||||
mfem_export_mk_files()
|
||||
|
||||
@@ -109,6 +109,10 @@ if (MFEM_USE_RAJA)
|
||||
find_dependency(RAJA)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_UMPIRE)
|
||||
find_dependency(umpire)
|
||||
endif()
|
||||
|
||||
if (NOT TARGET mfem)
|
||||
include(${CMAKE_CURRENT_LIST_DIR}/MFEMTargets.cmake)
|
||||
endif (NOT TARGET mfem)
|
||||
|
||||
@@ -14,12 +14,12 @@
|
||||
# - UMPIRE_LIBRARIES
|
||||
# - UMPIRE_INCLUDE_DIRS
|
||||
|
||||
if (NOT umpire_DIR AND UMPIRE_DIR)
|
||||
set(umpire_DIR ${UMPIRE_DIR}/lib/cmake/umpire)
|
||||
if (NOT umpire_ROOT AND UMPIRE_DIR)
|
||||
set(umpire_ROOT ${UMPIRE_DIR})
|
||||
endif()
|
||||
message(STATUS "Looking for UMPIRE ...")
|
||||
message(STATUS " in UMPIRE_DIR = ${UMPIRE_DIR}")
|
||||
message(STATUS " umpire_DIR = ${umpire_DIR}")
|
||||
message(STATUS " umpire_ROOT = ${umpire_ROOT}")
|
||||
find_package(umpire CONFIG)
|
||||
set(UMPIRE_FOUND ${umpire_FOUND})
|
||||
set(UMPIRE_LIBRARIES "umpire")
|
||||
|
||||
@@ -701,7 +701,6 @@ endfunction(mfem_find_library)
|
||||
# Extract compile and link options needed by the given target.
|
||||
#
|
||||
function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
|
||||
if (NOT TARGET ${Target})
|
||||
return()
|
||||
endif()
|
||||
@@ -799,7 +798,12 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
# message(STATUS "Lib = ${Lib}")
|
||||
# Filter-out generator expressions
|
||||
if (NOT ("${Lib}" MATCHES "^\\$"))
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
if(NOT ("${Lib}" STREQUAL "dl"))
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
else()
|
||||
# for some reason libdl doesn't include the "-l"
|
||||
list(APPEND LinkOpts "-ldl")
|
||||
endif()
|
||||
endif()
|
||||
else()
|
||||
mfem_get_target_options(${Lib} COpts LOpts)
|
||||
@@ -888,9 +892,18 @@ function(mfem_export_mk_files)
|
||||
set(${var} NO)
|
||||
endif()
|
||||
endforeach()
|
||||
# TODO: Add support for MFEM_USE_CUDA=YES
|
||||
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
|
||||
set(MFEM_HOST_CXX ${MFEM_CXX})
|
||||
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
|
||||
set(MFEM_CXX ${CMAKE_CUDA_COMPILER})
|
||||
if(MFEM_CUDA_COMPILER_IS_NVCC)
|
||||
set(MFEM_HOST_CXX ${CMAKE_CUDA_HOST_COMPILER})
|
||||
else()
|
||||
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
else()
|
||||
# mfem doesn't use enable_language(HIP)
|
||||
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
|
||||
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
set(MFEM_CPPFLAGS "")
|
||||
get_target_property(cxx_std mfem CXX_STANDARD)
|
||||
# For now, we ignore the setting of the CXX_EXTENSIONS property. If this
|
||||
@@ -900,6 +913,50 @@ function(mfem_export_mk_files)
|
||||
string(STRIP
|
||||
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
|
||||
MFEM_CXXFLAGS)
|
||||
if(MFEM_EXPORT_GPU_CONFIG)
|
||||
if (MFEM_USE_CUDA)
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} ${CMAKE_CUDA_FLAGS}")
|
||||
if (MFEM_CUDA_COMPILER_IS_NVCC)
|
||||
set(MFEM_CXXFLAGS "-x=cu ${MFEM_CXXFLAGS} -ccbin ${CMAKE_CXX_COMPILER} --forward-unknown-to-host-compiler")
|
||||
# The following intentionally hides CUDA deprecation warnings
|
||||
foreach(ENTRY IN LISTS CUDAToolkit_INCLUDE_DIRS)
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -isystem ${ENTRY}")
|
||||
endforeach()
|
||||
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
|
||||
# architecture flags not part of CMAKE_CUDA_FLAGS
|
||||
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -arch=${CMAKE_CUDA_ARCHITECTURES}")
|
||||
else()
|
||||
foreach (ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
|
||||
set(MFEM_CXXFLAGS
|
||||
"${MFEM_CXXFLAGS} -gencode arch=compute_${ENTRY},code=sm_${ENTRY}")
|
||||
endforeach()
|
||||
endif()
|
||||
endif()
|
||||
else()
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xcuda --cuda-path=${CUDAToolkit_LIBRARY_ROOT}")
|
||||
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
|
||||
# architecture flags not part of CMAKE_CUDA_FLAGS
|
||||
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
|
||||
# TODO: not supported
|
||||
else()
|
||||
foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
|
||||
set(MFEM_CXXFLAGS "-cuda-gpu-arch=sm_${ENTRY} ${MFEM_CXXFLAGS}")
|
||||
endforeach()
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
elseif (MFEM_USE_HIP)
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xhip")
|
||||
foreach(ENTRY IN LISTS CMAKE_HIP_ARCHITECTURES)
|
||||
set(MFEM_CXXFLAGS "--offload-arch=${ENTRY} ${MFEM_CXXFLAGS}")
|
||||
endforeach()
|
||||
endif()
|
||||
endif()
|
||||
set(MFEM_TPLFLAGS "")
|
||||
foreach(dir ${TPL_INCLUDE_DIRS})
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
|
||||
@@ -930,6 +987,9 @@ function(mfem_export_mk_files)
|
||||
set(MFEM_SHARED NO)
|
||||
set(MFEM_STATIC YES)
|
||||
endif()
|
||||
if (MFEM_USE_CUDA)
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} -lcudart")
|
||||
endif()
|
||||
set(MFEM_BUILD_TAG "${CMAKE_SYSTEM}")
|
||||
set(MFEM_PREFIX "${CMAKE_INSTALL_PREFIX}")
|
||||
# For the next 4 variables, these are the values for the build-tree version of
|
||||
@@ -938,8 +998,15 @@ function(mfem_export_mk_files)
|
||||
set(MFEM_LIB_DIR "${PROJECT_BINARY_DIR}")
|
||||
set(MFEM_TEST_MK "${PROJECT_SOURCE_DIR}/config/test.mk")
|
||||
set(MFEM_CONFIG_EXTRA "MFEM_BUILD_DIR ?= ${PROJECT_BINARY_DIR}")
|
||||
# TODO: CUDA/HIP support:
|
||||
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
|
||||
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
|
||||
if (MFEM_CUDA_COMPILER_IS_NVCC)
|
||||
set(MFEM_XLINKER "-Xlinker=")
|
||||
else()
|
||||
set(MFEM_XLINKER "${CMAKE_CUDA_LINKER_WRAPPER_FLAG}")
|
||||
endif()
|
||||
else()
|
||||
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
|
||||
endif()
|
||||
set(MFEM_MPIEXEC ${MPIEXEC})
|
||||
if (NOT MFEM_MPIEXEC)
|
||||
set(MFEM_MPIEXEC "mpirun")
|
||||
@@ -987,16 +1054,21 @@ function(mfem_export_mk_files)
|
||||
# handle interfaces (e.g., SCOREC::apf)
|
||||
if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*" OR "${lib}" MATCHES "ParMoonolith::.*")
|
||||
elseif (TARGET "${lib}")
|
||||
mfem_get_target_options(${lib} CompileOpts LinkOpts)
|
||||
mfem_get_target_options(${lib} CompileOpts2 LinkOpts2)
|
||||
# remove generator expressions
|
||||
string(GENEX_STRIP "${CompileOpts2}" CompileOpts)
|
||||
string(GENEX_STRIP "${LinkOpts2}" LinkOpts)
|
||||
# Removing duplicates may lead to issues:
|
||||
# list(REMOVE_DUPLICATES CompileOpts)
|
||||
# list(REMOVE_DUPLICATES LinkOpts)
|
||||
string(REPLACE ";" " " COpts "${CompileOpts}")
|
||||
string(REPLACE ";" " " LOpts "${LinkOpts}")
|
||||
# message(STATUS "${lib}[COpts]: '${COpts}'")
|
||||
# message(STATUS "${lib}[LOpts]: '${LOpts}'")
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpts}")
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpts}")
|
||||
# message(WARNING "${lib}[LinkOpts]: ${LinkOpts}")
|
||||
# message(WARNING "${lib}[CompileOpts]: ${CompileOpts}")
|
||||
foreach(LOpt IN LISTS LinkOpts)
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpt}")
|
||||
endforeach()
|
||||
foreach(COpt IN LISTS CompileOpts)
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpt}")
|
||||
endforeach()
|
||||
# message(FATAL_ERROR "***** interface lib found ... exiting *****")
|
||||
# handle static and shared libs
|
||||
elseif ("${suffix}" STREQUAL "${CMAKE_SHARED_LIBRARY_SUFFIX}")
|
||||
@@ -1004,7 +1076,7 @@ function(mfem_export_mk_files)
|
||||
get_filename_component(fullLibName ${lib} NAME_WE)
|
||||
string(REGEX REPLACE "^lib" "" libname ${fullLibName})
|
||||
set(MFEM_EXT_LIBS
|
||||
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
|
||||
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
|
||||
else()
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${lib}")
|
||||
endif()
|
||||
@@ -1013,7 +1085,7 @@ function(mfem_export_mk_files)
|
||||
# Create the build-tree version of 'config.mk'
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
|
||||
"${PROJECT_BINARY_DIR}/config/config.mk")
|
||||
"${PROJECT_BINARY_DIR}/config/config.mk" @ONLY)
|
||||
# Copy 'test.mk' from the source-tree to the build-tree
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/test.mk"
|
||||
@@ -1031,7 +1103,7 @@ function(mfem_export_mk_files)
|
||||
# Create the install-tree version of 'config.mk'
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
|
||||
"${PROJECT_BINARY_DIR}/config/config-install.mk")
|
||||
"${PROJECT_BINARY_DIR}/config/config-install.mk" @ONLY)
|
||||
|
||||
# Install rules for 'config.mk' and 'test.mk'
|
||||
install(FILES ${PROJECT_SOURCE_DIR}/config/test.mk
|
||||
|
||||
@@ -157,4 +157,18 @@ constexpr real_t operator""_r(unsigned long long v)
|
||||
#endif
|
||||
#endif // MFEM_USE_MPI not defined
|
||||
|
||||
#ifdef NVTX_DBG_HPP
|
||||
#include NVTX_DBG_HPP
|
||||
#else
|
||||
#define db1(...)
|
||||
#define dbg(...)
|
||||
#define dbl(...)
|
||||
#define dba(...)
|
||||
#define dbc(...)
|
||||
#define NVTX_MARK_FUNCTION
|
||||
#define NVTX_MARK_BEGIN(...)
|
||||
#define NVTX_MARK_END(...)
|
||||
#define NVTX(...)
|
||||
#endif
|
||||
|
||||
#endif // MFEM_CONFIG_HPP
|
||||
|
||||
@@ -522,6 +522,8 @@ GSLIB_LIB = -L$(GSLIB_DIR)/lib -lgs
|
||||
|
||||
# CUDA library configuration
|
||||
CUDA_OPT =
|
||||
# base CUDA install directory, only needed if building with clang+cuda
|
||||
CUDA_DIR = /usr/local/cuda/
|
||||
CUDA_LIB = -lcusparse -lcublas
|
||||
CLANG_CUDA_LIB = -L$(CUDA_DIR)/lib64 -L$(CUDA_DIR)/lib \
|
||||
$(XLINKER)-rpath,$(CUDA_DIR)/lib64,-rpath,$(CUDA_DIR)/lib \
|
||||
|
||||
@@ -47,6 +47,7 @@ list(APPEND ALL_EXE_SRCS
|
||||
ex39.cpp
|
||||
ex40.cpp
|
||||
ex41.cpp
|
||||
jitplayground.cpp
|
||||
)
|
||||
|
||||
if (MFEM_USE_MPI)
|
||||
|
||||
+2
-2
@@ -5,9 +5,9 @@
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tri.mesh
|
||||
// mpirun -np 4 ex12p -m ../data/beam-quad.mesh
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 462 -n 10 -o 2 -elast
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 464 -n 10 -o 2 -elast
|
||||
// mpirun -np 4 ex12p -m ../data/beam-hex.mesh -s 3878
|
||||
// mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 81
|
||||
// mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 82
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tri.mesh -s 3877 -o 2 -sys
|
||||
// mpirun -np 4 ex12p -m ../data/beam-quad.mesh -s 4544 -n 6 -o 3 -elast
|
||||
// mpirun -np 4 ex12p -m ../data/beam-quad-nurbs.mesh
|
||||
|
||||
+27
-9
@@ -302,15 +302,21 @@ int main(int argc, char *argv[])
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock_r(vishost, visport);
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_r.precision(8);
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_r << "solution\n" << *pmesh << u_exact->real()
|
||||
<< "window_title 'Exact: Real Part'" << flush;
|
||||
// Make sure all ranks have sent their real solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
|
||||
<< "window_title 'Exact: Imaginary Part'" << flush;
|
||||
// Make sure all ranks have sent their imaginary solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
}
|
||||
|
||||
// 11. Set up the parallel sesquilinear form a(.,.) on the finite element
|
||||
@@ -534,15 +540,21 @@ int main(int argc, char *argv[])
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock_r(vishost, visport);
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_r.precision(8);
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_r << "solution\n" << *pmesh << u.real()
|
||||
<< "window_title 'Solution: Real Part'" << flush;
|
||||
// Make sure all ranks have sent their real solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_i << "solution\n" << *pmesh << u.imag()
|
||||
<< "window_title 'Solution: Imaginary Part'" << flush;
|
||||
// Make sure all ranks have sent their imaginary solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
}
|
||||
if (visualization && exact_sol)
|
||||
{
|
||||
@@ -551,15 +563,21 @@ int main(int argc, char *argv[])
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock_r(vishost, visport);
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_r.precision(8);
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_r << "solution\n" << *pmesh << u_exact->real()
|
||||
<< "window_title 'Error: Real Part'" << flush;
|
||||
// Make sure all ranks have sent their real solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
|
||||
<< "window_title 'Error: Imaginary Part'" << flush;
|
||||
// Make sure all ranks have sent their imaginary solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
}
|
||||
if (visualization)
|
||||
{
|
||||
|
||||
+11
-52
@@ -5,8 +5,8 @@
|
||||
// Sample runs:
|
||||
// ex37 -alpha 10
|
||||
// ex37 -alpha 10 -pv
|
||||
// ex37 -lambda 0.1 -mu 0.1
|
||||
// ex37 -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
|
||||
// ex37 -lambda 0.1 -mu 0.1 -growth 1
|
||||
// ex37 -o 2 -alpha 10.0 -mi 50 -vf 0.4 -ntol 1e-5 -growth 1.5
|
||||
// ex37 -r 6 -o 1 -alpha 25.0 -epsilon 0.02 -mi 50 -ntol 1e-5
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to solve a
|
||||
@@ -55,53 +55,6 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Newton iteration tolerance
|
||||
* @param max_its Newton maximum iteration number
|
||||
* @return real_t Final volume, ∫_Ω sigmoid(ψ)
|
||||
*/
|
||||
real_t proj(GridFunction &psi, real_t target_volume, real_t tol=1e-12,
|
||||
int max_its=10)
|
||||
{
|
||||
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
|
||||
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
|
||||
|
||||
LinearForm int_sigmoid_psi(psi.FESpace());
|
||||
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
LinearForm int_der_sigmoid_psi(psi.FESpace());
|
||||
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
|
||||
der_sigmoid_psi));
|
||||
bool done = false;
|
||||
for (int k=0; k<max_its; k++) // Newton iteration
|
||||
{
|
||||
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
|
||||
const real_t f = int_sigmoid_psi.Sum() - target_volume;
|
||||
|
||||
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
|
||||
const real_t df = int_der_sigmoid_psi.Sum();
|
||||
|
||||
const real_t dc = -f/df;
|
||||
psi += dc;
|
||||
if (abs(dc) < tol) { done = true; break; }
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
int_sigmoid_psi.Assemble();
|
||||
return int_sigmoid_psi.Sum();
|
||||
}
|
||||
|
||||
/*
|
||||
* ---------------------------------------------------------------
|
||||
* ALGORITHM PREAMBLE
|
||||
@@ -180,10 +133,11 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 5;
|
||||
int order = 2;
|
||||
real_t alpha = 1.0;
|
||||
real_t growth = 2;
|
||||
real_t epsilon = 0.01;
|
||||
real_t vol_fraction = 0.5;
|
||||
int max_it = 1e3;
|
||||
real_t itol = 1e-1;
|
||||
real_t itol = 1e-2;
|
||||
real_t ntol = 1e-4;
|
||||
real_t rho_min = 1e-6;
|
||||
real_t lambda = 1.0;
|
||||
@@ -198,6 +152,8 @@ int main(int argc, char *argv[])
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
|
||||
"Step length for gradient descent.");
|
||||
args.AddOption(&growth, "-growth", "--alpha-growth-rate",
|
||||
"Growth rate of step length for gradient descent.");
|
||||
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
|
||||
"Length scale for ρ.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
@@ -332,6 +288,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
|
||||
FilterSolver->SetupFEM();
|
||||
FilterSolver->AssembleDiffusionBilinear();
|
||||
|
||||
BilinearForm mass(&control_fes);
|
||||
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
|
||||
@@ -385,7 +342,7 @@ int main(int argc, char *argv[])
|
||||
// 11. Iterate:
|
||||
for (int k = 1; k <= max_it; k++)
|
||||
{
|
||||
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
|
||||
if (k > 1) { alpha = std::pow((real_t) k,growth); }
|
||||
|
||||
mfem::out << "\nStep = " << k << std::endl;
|
||||
|
||||
@@ -422,7 +379,9 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Step 5 - Update design variable ψ ← proj(ψ - αG)
|
||||
psi.Add(-alpha, grad);
|
||||
const real_t material_volume = proj(psi, target_volume);
|
||||
GridFunction alpha_grad(grad);
|
||||
alpha_grad *= alpha;
|
||||
const real_t material_volume = proj(psi, alpha_grad, target_volume);
|
||||
|
||||
// Compute ||ρ - ρ_old|| in control fes.
|
||||
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
|
||||
+189
-29
@@ -137,7 +137,7 @@ public:
|
||||
exponent(exponent_), rho_min(rho_min_)
|
||||
{
|
||||
MFEM_ASSERT(rho_min_ >= 0.0, "rho_min must be >= 0");
|
||||
MFEM_ASSERT(rho_min_ < 1.0, "rho_min must be > 1");
|
||||
MFEM_ASSERT(rho_min_ < 1.0, "rho_min must be < 1");
|
||||
MFEM_ASSERT(u, "displacement field is not set");
|
||||
MFEM_ASSERT(rho_filter, "density field is not set");
|
||||
}
|
||||
@@ -231,9 +231,12 @@ private:
|
||||
FiniteElementCollection * fec = nullptr;
|
||||
FiniteElementSpace * fes = nullptr;
|
||||
Array<int> ess_bdr;
|
||||
Array<int> ess_tdof_list;
|
||||
Array<int> neumann_bdr;
|
||||
GridFunction * u = nullptr;
|
||||
LinearForm * b = nullptr;
|
||||
BilinearForm * a = nullptr;
|
||||
OperatorPtr A;
|
||||
bool parallel;
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParMesh * pmesh = nullptr;
|
||||
@@ -267,6 +270,8 @@ public:
|
||||
void ResetFEM();
|
||||
void SetupFEM();
|
||||
|
||||
void UpdateEssentialTDofs();
|
||||
void AssembleDiffusionBilinear(bool update_ess_tdofs=true);
|
||||
void Solve();
|
||||
GridFunction * GetFEMSolution();
|
||||
LinearForm * GetLinearForm() {return b;}
|
||||
@@ -371,6 +376,130 @@ public:
|
||||
|
||||
};
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* using the Illinois method
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param alpha_grad alpha multiplied by gradient
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Illinois iteration tolerance
|
||||
* @param max_its Illinois maximum iteration number
|
||||
* @return real_t Final volume (∫_Ω sigmoid(ψ) dx)
|
||||
*/
|
||||
real_t proj(GridFunction &psi, GridFunction &alpha_grad, real_t target_volume,
|
||||
real_t tol = 1e-12, int max_its = 100)
|
||||
{
|
||||
#ifdef MFEM_USE_MPI
|
||||
FiniteElementSpace *fes = psi.FESpace();
|
||||
ParFiniteElementSpace *pfes = dynamic_cast<ParFiniteElementSpace*>(fes);
|
||||
#endif
|
||||
ConstantCoefficient zero_cf(0.0);
|
||||
real_t a = -alpha_grad.ComputeMaxError(zero_cf);
|
||||
real_t b = -a;
|
||||
real_t y = 0.0;
|
||||
|
||||
MappedGridFunctionCoefficient sigmoid_psi(
|
||||
&psi, [&y](const real_t x) { return sigmoid(x + y); });
|
||||
std::unique_ptr<LinearForm> int_sigmoid_psi;
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParGridFunction *par_psi = dynamic_cast<ParGridFunction *>(&psi);
|
||||
if (par_psi)
|
||||
{
|
||||
int_sigmoid_psi.reset(new ParLinearForm(par_psi->ParFESpace()));
|
||||
}
|
||||
else
|
||||
{
|
||||
int_sigmoid_psi.reset(new LinearForm(psi.FESpace()));
|
||||
}
|
||||
#else
|
||||
int_sigmoid_psi.reset(new LinearForm(psi.FESpace()));
|
||||
#endif
|
||||
int_sigmoid_psi->AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
|
||||
y = a;
|
||||
int_sigmoid_psi->Assemble();
|
||||
real_t f_a = int_sigmoid_psi->Sum(); // f_a := f(a) + θ vol(Ω)
|
||||
|
||||
y = b;
|
||||
int_sigmoid_psi->Assemble();
|
||||
real_t f_b = int_sigmoid_psi->Sum(); // f_b := f(b) + θ vol(Ω)
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (pfes)
|
||||
{
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f_a, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f_b, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
}
|
||||
#endif
|
||||
f_a -= target_volume; // f_a := f(a)
|
||||
f_b -= target_volume; // f_b := f(b)
|
||||
real_t c = 0.0;
|
||||
real_t f_c = 0.0;
|
||||
int side = 0;
|
||||
|
||||
bool done = false;
|
||||
for (int k=0; k < max_its; k++)
|
||||
{
|
||||
c = (f_a * b - f_b * a) / (f_a - f_b);
|
||||
|
||||
if (abs(b - a) < tol * abs(b + a)) { done = true; break; }
|
||||
|
||||
y = c;
|
||||
int_sigmoid_psi->Assemble();
|
||||
f_c = int_sigmoid_psi->Sum(); // f_c := f(c) + θ vol(Ω)
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (pfes)
|
||||
{
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f_c, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
}
|
||||
#endif
|
||||
f_c -= target_volume; // f_c := f(c)
|
||||
|
||||
if (f_c * f_b > 0)
|
||||
{
|
||||
b = c;
|
||||
f_b = f_c;
|
||||
if (side == -1) { f_a /= 2.0; }
|
||||
side = -1;
|
||||
}
|
||||
else if (f_c * f_a > 0)
|
||||
{
|
||||
a = c;
|
||||
f_a = f_c;
|
||||
if (side == 1) { f_b /= 2.0; }
|
||||
side = 1;
|
||||
}
|
||||
else
|
||||
{
|
||||
done = true; break;
|
||||
}
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
y = 0.0;
|
||||
psi += c;
|
||||
int_sigmoid_psi->Assemble();
|
||||
real_t material_volume = int_sigmoid_psi->Sum();
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (pfes)
|
||||
{
|
||||
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1,
|
||||
MPITypeMap<real_t>::mpi_type, MPI_SUM, MPI_COMM_WORLD);
|
||||
}
|
||||
#endif
|
||||
return material_volume;
|
||||
}
|
||||
|
||||
// Poisson solver
|
||||
|
||||
@@ -422,12 +551,8 @@ void DiffusionSolver::SetupFEM()
|
||||
}
|
||||
}
|
||||
|
||||
void DiffusionSolver::Solve()
|
||||
void DiffusionSolver::UpdateEssentialTDofs()
|
||||
{
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
Array<int> ess_tdof_list;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
@@ -440,7 +565,39 @@ void DiffusionSolver::Solve()
|
||||
#else
|
||||
fes->GetEssentialTrueDofs(ess_bdr,ess_tdof_list);
|
||||
#endif
|
||||
*u=0.0;
|
||||
}
|
||||
|
||||
void DiffusionSolver::AssembleDiffusionBilinear(bool update_ess_tdofs)
|
||||
{
|
||||
if (update_ess_tdofs)
|
||||
{
|
||||
UpdateEssentialTDofs();
|
||||
}
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
a = new ParBilinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
a = new BilinearForm(fes);
|
||||
}
|
||||
#else
|
||||
a = new BilinearForm(fes);
|
||||
#endif
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(*diffcf));
|
||||
if (masscf)
|
||||
{
|
||||
a->AddDomainIntegrator(new MassIntegrator(*masscf));
|
||||
}
|
||||
a->Assemble();
|
||||
a->FormSystemMatrix(ess_tdof_list, A);
|
||||
}
|
||||
|
||||
void DiffusionSolver::Solve()
|
||||
{
|
||||
Vector B, X;
|
||||
|
||||
if (b)
|
||||
{
|
||||
delete b;
|
||||
@@ -475,31 +632,33 @@ void DiffusionSolver::Solve()
|
||||
|
||||
b->Assemble();
|
||||
|
||||
BilinearForm * a = nullptr;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
a = new ParBilinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
a = new BilinearForm(fes);
|
||||
}
|
||||
#else
|
||||
a = new BilinearForm(fes);
|
||||
#endif
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(*diffcf));
|
||||
if (masscf)
|
||||
{
|
||||
a->AddDomainIntegrator(new MassIntegrator(*masscf));
|
||||
}
|
||||
a->Assemble();
|
||||
*u=0.0;
|
||||
if (essbdr_cf)
|
||||
{
|
||||
u->ProjectBdrCoefficient(*essbdr_cf,ess_bdr);
|
||||
}
|
||||
a->FormLinearSystem(ess_tdof_list, *u, *b, A, X, B);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
X.SetSize(pfes->TrueVSize());
|
||||
B.SetSize(pfes->TrueVSize());
|
||||
dynamic_cast<ParGridFunction*>(u)->ParallelAssemble(X);
|
||||
dynamic_cast<ParLinearForm*>(b)->ParallelAssemble(B);
|
||||
dynamic_cast<ParBilinearForm*>(a)->ParallelEliminateTDofsInRHS(
|
||||
ess_tdof_list, X, B);
|
||||
}
|
||||
else
|
||||
{
|
||||
X.NewDataAndSize(u->GetData(), u->Size());
|
||||
B.NewDataAndSize(b->GetData(), b->Size());
|
||||
a->EliminateVDofsInRHS(ess_tdof_list, X, B);
|
||||
}
|
||||
#else
|
||||
X.NewDataAndSize(u->GetData(), u->Size());
|
||||
B.NewDataAndSize(b->GetData(), b->Size());
|
||||
a->EliminateVDofsInRHS(ess_tdof_list, X, B);
|
||||
#endif
|
||||
|
||||
CGSolver * cg = nullptr;
|
||||
Solver * M = nullptr;
|
||||
@@ -528,7 +687,6 @@ void DiffusionSolver::Solve()
|
||||
delete M;
|
||||
delete cg;
|
||||
a->RecoverFEMSolution(X, *b, *u);
|
||||
delete a;
|
||||
}
|
||||
|
||||
GridFunction * DiffusionSolver::GetFEMSolution()
|
||||
@@ -560,6 +718,8 @@ DiffusionSolver::~DiffusionSolver()
|
||||
#endif
|
||||
delete fec; fec = nullptr;
|
||||
delete b;
|
||||
A.Clear();
|
||||
delete a;
|
||||
}
|
||||
|
||||
|
||||
|
||||
+11
-60
@@ -4,8 +4,8 @@
|
||||
//
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex37p -alpha 10 -pv
|
||||
// mpirun -np 4 ex37p -lambda 0.1 -mu 0.1
|
||||
// mpirun -np 4 ex37p -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
|
||||
// mpirun -np 4 ex37p -lambda 0.1 -mu 0.1 -growth 1
|
||||
// mpirun -np 4 ex37p -o 2 -alpha 10.0 -mi 50 -vf 0.4 -ntol 1e-5 -growth 1.5
|
||||
// mpirun -np 4 ex37p -r 6 -o 2 -alpha 10.0 -epsilon 0.02 -mi 50 -ntol 1e-5
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to solve a
|
||||
@@ -54,61 +54,6 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Newton iteration tolerance
|
||||
* @param max_its Newton maximum iteration number
|
||||
* @return real_t Final volume, ∫_Ω sigmoid(ψ)
|
||||
*/
|
||||
real_t proj(ParGridFunction &psi, real_t target_volume, real_t tol=1e-12,
|
||||
int max_its=10)
|
||||
{
|
||||
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
|
||||
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
|
||||
|
||||
ParLinearForm int_sigmoid_psi(psi.ParFESpace());
|
||||
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
ParLinearForm int_der_sigmoid_psi(psi.ParFESpace());
|
||||
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
|
||||
der_sigmoid_psi));
|
||||
bool done = false;
|
||||
for (int k=0; k<max_its; k++) // Newton iteration
|
||||
{
|
||||
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
|
||||
real_t f = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
f -= target_volume;
|
||||
|
||||
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
|
||||
real_t df = int_der_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &df, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
|
||||
const real_t dc = -f/df;
|
||||
psi += dc;
|
||||
if (abs(dc) < tol) { done = true; break; }
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
int_sigmoid_psi.Assemble();
|
||||
real_t material_volume = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1,
|
||||
MPITypeMap<real_t>::mpi_type, MPI_SUM, MPI_COMM_WORLD);
|
||||
return material_volume;
|
||||
}
|
||||
|
||||
/*
|
||||
* ---------------------------------------------------------------
|
||||
* ALGORITHM PREAMBLE
|
||||
@@ -193,10 +138,11 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 5;
|
||||
int order = 2;
|
||||
real_t alpha = 1.0;
|
||||
real_t growth = 2;
|
||||
real_t epsilon = 0.01;
|
||||
real_t vol_fraction = 0.5;
|
||||
int max_it = 1e3;
|
||||
real_t itol = 1e-1;
|
||||
real_t itol = 1e-2;
|
||||
real_t ntol = 1e-4;
|
||||
real_t rho_min = 1e-6;
|
||||
real_t lambda = 1.0;
|
||||
@@ -211,6 +157,8 @@ int main(int argc, char *argv[])
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
|
||||
"Step length for gradient descent.");
|
||||
args.AddOption(&growth, "-growth", "--alpha-growth-rate",
|
||||
"Growth rate of step length for gradient descent.");
|
||||
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
|
||||
"Length scale for ρ.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
@@ -359,6 +307,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
|
||||
FilterSolver->SetupFEM();
|
||||
FilterSolver->AssembleDiffusionBilinear();
|
||||
|
||||
ParBilinearForm mass(&control_fes);
|
||||
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
|
||||
@@ -412,7 +361,7 @@ int main(int argc, char *argv[])
|
||||
// 11. Iterate:
|
||||
for (int k = 1; k <= max_it; k++)
|
||||
{
|
||||
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
|
||||
if (k > 1) { alpha = std::pow((real_t) k,growth); }
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
@@ -452,7 +401,9 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Step 5 - Update design variable ψ ← proj(ψ - αG)
|
||||
psi.Add(-alpha, grad);
|
||||
const real_t material_volume = proj(psi, target_volume);
|
||||
ParGridFunction alpha_grad(grad);
|
||||
alpha_grad *= alpha;
|
||||
const real_t material_volume = proj(psi, alpha_grad, target_volume);
|
||||
|
||||
// Compute ||ρ - ρ_old|| in control fes.
|
||||
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
|
||||
@@ -0,0 +1,536 @@
|
||||
#include <mfem.hpp>
|
||||
|
||||
#include "../fem/dfem/util.hpp"
|
||||
|
||||
#include <proteus/CppJitModule.h>
|
||||
|
||||
#include "jitplayground.hpp"
|
||||
|
||||
#include <algorithm>
|
||||
#include <array>
|
||||
#include <cctype>
|
||||
#include <cmath>
|
||||
#include <fstream>
|
||||
#include <initializer_list>
|
||||
#include <iostream>
|
||||
#include <memory>
|
||||
#include <sstream>
|
||||
#include <string>
|
||||
#include <string_view>
|
||||
#include <type_traits>
|
||||
#include <unordered_map>
|
||||
#include <unordered_set>
|
||||
#include <utility>
|
||||
#include <vector>
|
||||
|
||||
namespace util
|
||||
{
|
||||
constexpr std::string_view Dirname(std::string_view path)
|
||||
{
|
||||
const size_t last_sep = path.find_last_of("/\\");
|
||||
if (last_sep == std::string_view::npos) { return {}; }
|
||||
return path.substr(0, last_sep);
|
||||
}
|
||||
|
||||
constexpr std::string_view thisFileDir = Dirname(__FILE__);
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
static std::string TypeNameString()
|
||||
{
|
||||
return std::string(mfem::future::get_type_name<T>());
|
||||
}
|
||||
|
||||
template <typename Tuple, size_t... Is>
|
||||
static auto ParamTypeStringsImpl(std::index_sequence<Is...>)
|
||||
{
|
||||
return std::array<std::string, sizeof...(Is)>
|
||||
{
|
||||
TypeNameString<std::remove_reference_t<decltype(mfem::future::get<Is>(std::declval<Tuple&>()))>>()...
|
||||
};
|
||||
}
|
||||
|
||||
template <typename Tuple>
|
||||
static auto ParamTypeStrings()
|
||||
{
|
||||
return ParamTypeStringsImpl<Tuple>(
|
||||
std::make_index_sequence<mfem::future::tuple_size<Tuple>::value> {});
|
||||
}
|
||||
|
||||
static std::string_view Trim(std::string_view s)
|
||||
{
|
||||
size_t begin = 0;
|
||||
while (begin < s.size() && std::isspace(static_cast<unsigned char>(s[begin])))
|
||||
{
|
||||
++begin;
|
||||
}
|
||||
size_t end = s.size();
|
||||
while (end > begin &&
|
||||
std::isspace(static_cast<unsigned char>(s[end - 1])))
|
||||
{
|
||||
--end;
|
||||
}
|
||||
return s.substr(begin, end - begin);
|
||||
}
|
||||
|
||||
static bool IsValidIdentifier(std::string_view s)
|
||||
{
|
||||
if (s.empty()) { return false; }
|
||||
const unsigned char c0 = static_cast<unsigned char>(s[0]);
|
||||
if (!(std::isalpha(c0) || c0 == '_')) { return false; }
|
||||
for (size_t i = 1; i < s.size(); ++i)
|
||||
{
|
||||
const unsigned char c = static_cast<unsigned char>(s[i]);
|
||||
if (!(std::isalnum(c) || c == '_')) { return false; }
|
||||
}
|
||||
return true;
|
||||
}
|
||||
|
||||
static bool ParseJitDirective(std::string_view line,
|
||||
std::string &type,
|
||||
std::string &var,
|
||||
std::string &kind)
|
||||
{
|
||||
const size_t jit_pos = line.find("$JIT");
|
||||
if (jit_pos == std::string_view::npos) { return false; }
|
||||
|
||||
const size_t open = line.find('[', jit_pos);
|
||||
const size_t close = line.find(']', jit_pos);
|
||||
MFEM_VERIFY(open != std::string_view::npos &&
|
||||
close != std::string_view::npos &&
|
||||
close > open,
|
||||
"malformed $JIT directive (expected brackets): " << line);
|
||||
|
||||
const std::string_view payload = line.substr(open + 1, close - open - 1);
|
||||
const size_t comma1 = payload.find(',');
|
||||
const size_t comma2 = (comma1 == std::string_view::npos)
|
||||
? std::string_view::npos
|
||||
: payload.find(',', comma1 + 1);
|
||||
MFEM_VERIFY(comma1 != std::string_view::npos &&
|
||||
comma2 != std::string_view::npos,
|
||||
"malformed $JIT directive (expected 3 comma-separated fields): "
|
||||
<< line);
|
||||
|
||||
const std::string_view f0 = Trim(payload.substr(0, comma1));
|
||||
const std::string_view f1 = Trim(payload.substr(comma1 + 1,
|
||||
comma2 - comma1 - 1));
|
||||
const std::string_view f2 = Trim(payload.substr(comma2 + 1));
|
||||
MFEM_VERIFY(!f0.empty() && !f1.empty() && !f2.empty(),
|
||||
"malformed $JIT directive (empty field): " << line);
|
||||
|
||||
type.assign(f0);
|
||||
var.assign(f1);
|
||||
kind.assign(f2);
|
||||
return true;
|
||||
}
|
||||
|
||||
static std::string ReadFileOrEmpty(const std::string &fn)
|
||||
{
|
||||
std::ifstream file(fn);
|
||||
if (!file.is_open())
|
||||
{
|
||||
std::cerr << "could not open file " << fn << "\n";
|
||||
return {};
|
||||
}
|
||||
std::stringstream buffer;
|
||||
buffer << file.rdbuf();
|
||||
return buffer.str();
|
||||
}
|
||||
|
||||
static std::vector<std::string> ExtractJitVarNames(const std::string
|
||||
&kernel_code)
|
||||
{
|
||||
std::stringstream ss(kernel_code);
|
||||
std::string line;
|
||||
std::vector<std::string> var_names;
|
||||
std::unordered_set<std::string> seen_vars;
|
||||
|
||||
while (std::getline(ss, line))
|
||||
{
|
||||
std::string type, var, kind;
|
||||
if (ParseJitDirective(line, type, var, kind))
|
||||
{
|
||||
MFEM_VERIFY(IsValidIdentifier(var),
|
||||
"$JIT variable must be a valid identifier: " << var);
|
||||
MFEM_VERIFY(seen_vars.insert(var).second,
|
||||
"duplicate $JIT variable name: " << var);
|
||||
var_names.push_back(var);
|
||||
}
|
||||
}
|
||||
return var_names;
|
||||
}
|
||||
|
||||
static std::string RewriteKernelForJit(std::string kernel_code,
|
||||
const std::vector<std::string> &jit_values)
|
||||
{
|
||||
std::stringstream ss(kernel_code);
|
||||
std::string line;
|
||||
|
||||
std::string out;
|
||||
out.reserve(kernel_code.size() + 128);
|
||||
|
||||
bool have_pending = false;
|
||||
size_t pending_index = 0;
|
||||
std::string pending_type;
|
||||
std::string pending_var;
|
||||
std::unordered_set<std::string> seen_vars;
|
||||
|
||||
while (std::getline(ss, line))
|
||||
{
|
||||
line.push_back('\n');
|
||||
|
||||
if (have_pending)
|
||||
{
|
||||
MFEM_VERIFY(pending_index < jit_values.size(),
|
||||
"not enough JIT values provided");
|
||||
const size_t indent_end = line.find_first_not_of(" \t");
|
||||
const std::string indent =
|
||||
(indent_end == std::string::npos) ? std::string() :
|
||||
line.substr(0, indent_end);
|
||||
out += indent + "const " + pending_type + " " + pending_var + " = " +
|
||||
jit_values[pending_index] + ";\n";
|
||||
have_pending = false;
|
||||
++pending_index;
|
||||
continue;
|
||||
}
|
||||
|
||||
std::string type, var, kind;
|
||||
if (ParseJitDirective(line, type, var, kind))
|
||||
{
|
||||
MFEM_VERIFY(IsValidIdentifier(var),
|
||||
"$JIT variable must be a valid identifier: " << var);
|
||||
MFEM_VERIFY(kind == "generic",
|
||||
"unsupported $JIT kind: " << kind);
|
||||
MFEM_VERIFY(seen_vars.insert(var).second,
|
||||
"duplicate $JIT variable name: " << var);
|
||||
|
||||
pending_type = std::move(type);
|
||||
pending_var = std::move(var);
|
||||
have_pending = true;
|
||||
continue; // drop directive line
|
||||
}
|
||||
|
||||
out += line;
|
||||
}
|
||||
|
||||
MFEM_VERIFY(!have_pending,
|
||||
"$JIT directive must annotate a following line");
|
||||
MFEM_VERIFY(jit_values.size() == pending_index,
|
||||
"JIT value count must match number of $JIT directives");
|
||||
return out;
|
||||
}
|
||||
|
||||
static std::string GeneratedOutputPath(std::string_view original_path)
|
||||
{
|
||||
const size_t last_sep = original_path.find_last_of("/\\");
|
||||
const size_t dot = original_path.find_last_of('.');
|
||||
const bool dot_in_filename =
|
||||
(dot != std::string_view::npos) &&
|
||||
(last_sep == std::string_view::npos || dot > last_sep);
|
||||
|
||||
const std::string_view base =
|
||||
dot_in_filename ? original_path.substr(0, dot) : original_path;
|
||||
return std::string(base) + "_generated.hpp";
|
||||
}
|
||||
|
||||
static void WriteFileOrWarn(const std::string &path,
|
||||
const std::string &contents)
|
||||
{
|
||||
std::ofstream out(path);
|
||||
if (!out.is_open())
|
||||
{
|
||||
std::cerr << "could not write generated file " << path << "\n";
|
||||
return;
|
||||
}
|
||||
out << contents;
|
||||
}
|
||||
|
||||
class JitQFunction
|
||||
{
|
||||
public:
|
||||
template <typename ImplT, size_t N>
|
||||
JitQFunction(ImplT, const std::string &fn,
|
||||
const std::array<bool, N> &activity_map)
|
||||
{
|
||||
using qf_signature = typename
|
||||
mfem::future::get_function_signature<
|
||||
decltype(&ImplT::operator())>::type;
|
||||
using qf_param_ts = typename qf_signature::parameter_ts;
|
||||
constexpr size_t nparams = mfem::future::tuple_size<qf_param_ts>::value;
|
||||
static_assert(N == nparams, "activity_map size must match qfunc arity");
|
||||
|
||||
this->fn = fn;
|
||||
this->nparams = nparams;
|
||||
this->activity_map.reserve(N);
|
||||
for (size_t i = 0; i < N; ++i)
|
||||
{
|
||||
this->activity_map.push_back(activity_map[i]);
|
||||
}
|
||||
{
|
||||
const auto param_types_arr = ParamTypeStrings<qf_param_ts>();
|
||||
this->param_types.assign(param_types_arr.begin(), param_types_arr.end());
|
||||
}
|
||||
this->return_type = TypeNameString<typename qf_signature::return_t>();
|
||||
this->return_is_void = std::is_same_v<typename qf_signature::return_t, void>;
|
||||
this->impl_type_name = TypeNameString<ImplT>();
|
||||
this->jit_var_names = ExtractJitVarNames(ReadFileOrEmpty(fn));
|
||||
}
|
||||
|
||||
template <typename ReturnT, typename... Args>
|
||||
ReturnT run(std::string_view name,
|
||||
std::initializer_list<std::pair<std::string_view, std::string_view>> jit_values,
|
||||
Args&&... args)
|
||||
{
|
||||
auto ordered_values = MatchJitValues(jit_values);
|
||||
auto &mod = GetOrCreateModule(ordered_values);
|
||||
auto &instance = mod.instantiate(std::string(name), std::string());
|
||||
return instance.template run<ReturnT>(std::forward<Args>(args)...);
|
||||
}
|
||||
|
||||
template <typename ReturnT, typename... Args>
|
||||
ReturnT run_primal(
|
||||
std::initializer_list<std::pair<std::string_view, std::string_view>> jit_values,
|
||||
Args&&... args)
|
||||
{
|
||||
return run<ReturnT>(qfunc_name, jit_values,
|
||||
std::forward<Args>(args)...);
|
||||
}
|
||||
|
||||
template <typename ReturnT, typename... Args>
|
||||
ReturnT run_derivative(
|
||||
std::initializer_list<std::pair<std::string_view, std::string_view>> jit_values,
|
||||
Args&&... args)
|
||||
{
|
||||
return run<ReturnT>(qfunc_name + "_fwddiff", jit_values,
|
||||
std::forward<Args>(args)...);
|
||||
}
|
||||
|
||||
private:
|
||||
std::vector<std::string_view> MatchJitValues(
|
||||
std::initializer_list<std::pair<std::string_view, std::string_view>>
|
||||
named_values) const
|
||||
{
|
||||
std::unordered_map<std::string_view, std::string_view> value_map;
|
||||
for (const auto &[name, value] : named_values)
|
||||
{
|
||||
value_map[name] = value;
|
||||
}
|
||||
|
||||
std::vector<std::string_view> ordered_values;
|
||||
ordered_values.reserve(jit_var_names.size());
|
||||
for (const auto &var_name : jit_var_names)
|
||||
{
|
||||
auto it = value_map.find(var_name);
|
||||
MFEM_VERIFY(it != value_map.end(),
|
||||
"missing JIT value for variable: " << var_name);
|
||||
ordered_values.push_back(it->second);
|
||||
}
|
||||
|
||||
MFEM_VERIFY(ordered_values.size() == named_values.size(),
|
||||
"provided " << named_values.size() << " JIT values but expected "
|
||||
<< jit_var_names.size());
|
||||
return ordered_values;
|
||||
}
|
||||
|
||||
|
||||
std::string BuildModuleCode(const std::vector<std::string> &jit_values) const
|
||||
{
|
||||
std::string module_code =
|
||||
RewriteKernelForJit(ReadFileOrEmpty(fn), jit_values);
|
||||
module_code += "\n\n";
|
||||
module_code += "// --- generated ---\n";
|
||||
module_code +=
|
||||
"template <typename return_type, typename... Args>\n"
|
||||
"return_type __enzyme_fwddiff(Args...);\n"
|
||||
"\n"
|
||||
"extern int enzyme_const;\n"
|
||||
"extern int enzyme_dup;\n"
|
||||
"\n";
|
||||
|
||||
// Generate a primal wrapper with the requested symbol name, so the kernel
|
||||
// header can just define the qfunc as a functor.
|
||||
//
|
||||
// Note: Proteus instantiates entrypoints via `qfunc_wrapper<>(...)` even
|
||||
// when there are no user template args, so keep the wrapper itself a
|
||||
// template (with a default parameter) while still doing literal `$JIT`
|
||||
// replacements in the kernel code.
|
||||
module_code += "template <typename = void>\n";
|
||||
module_code += return_type + " " +
|
||||
std::string(qfunc_name) + "(";
|
||||
bool first = true;
|
||||
for (size_t i = 0; i < nparams; ++i)
|
||||
{
|
||||
if (!first) { module_code += ", "; }
|
||||
first = false;
|
||||
module_code += param_types[i] + " Arg" + std::to_string(i);
|
||||
}
|
||||
module_code += ")\n";
|
||||
module_code += "{\n";
|
||||
module_code += " " + impl_type_name + " qf;\n";
|
||||
if (return_is_void)
|
||||
{
|
||||
module_code += " ";
|
||||
}
|
||||
else
|
||||
{
|
||||
module_code += " return ";
|
||||
}
|
||||
module_code += "qf(";
|
||||
for (size_t i = 0; i < nparams; ++i)
|
||||
{
|
||||
if (i) { module_code += ", "; }
|
||||
module_code += "Arg" + std::to_string(i);
|
||||
}
|
||||
module_code += ");\n";
|
||||
module_code += "}\n\n";
|
||||
|
||||
module_code += "template <typename = void>\n";
|
||||
module_code += return_type + " " +
|
||||
std::string(qfunc_name) + "_fwddiff(";
|
||||
|
||||
first = true;
|
||||
for (size_t i = 0; i < nparams; ++i)
|
||||
{
|
||||
if (!first) { module_code += ", "; }
|
||||
first = false;
|
||||
module_code += param_types[i] + " Arg" + std::to_string(i);
|
||||
if (activity_map[i])
|
||||
{
|
||||
module_code += ", " + param_types[i] + " dArg" + std::to_string(i);
|
||||
}
|
||||
}
|
||||
module_code += ")\n";
|
||||
module_code += "{\n";
|
||||
if (return_is_void)
|
||||
{
|
||||
module_code += " __enzyme_fwddiff<void>(\n";
|
||||
}
|
||||
else
|
||||
{
|
||||
module_code += " return __enzyme_fwddiff<" +
|
||||
return_type + ">(\n";
|
||||
}
|
||||
module_code += " (void*)" + std::string(qfunc_name) + "<>";
|
||||
module_code += ",\n";
|
||||
for (size_t i = 0; i < nparams; ++i)
|
||||
{
|
||||
if (activity_map[i])
|
||||
{
|
||||
module_code += " enzyme_dup, Arg" + std::to_string(i) +
|
||||
", dArg" + std::to_string(i);
|
||||
}
|
||||
else
|
||||
{
|
||||
module_code += " enzyme_const, Arg" + std::to_string(i);
|
||||
}
|
||||
module_code += (i + 1 == nparams) ? ");\n" : ",\n";
|
||||
}
|
||||
module_code += "}\n";
|
||||
|
||||
WriteFileOrWarn(GeneratedOutputPath(fn), module_code);
|
||||
return module_code;
|
||||
}
|
||||
|
||||
proteus::CppJitModule &GetOrCreateModule(
|
||||
const std::vector<std::string_view> &jit_values)
|
||||
{
|
||||
std::string key;
|
||||
for (const auto &val : jit_values)
|
||||
{
|
||||
if (!key.empty()) { key += ","; }
|
||||
key += val;
|
||||
}
|
||||
|
||||
auto it = modules.find(key);
|
||||
if (it != modules.end())
|
||||
{
|
||||
return *it->second;
|
||||
}
|
||||
|
||||
std::vector<std::string> values(jit_values.begin(), jit_values.end());
|
||||
std::string code = BuildModuleCode(values);
|
||||
auto mod = std::make_unique<proteus::CppJitModule>("host", code,
|
||||
DefaultExtraArgs());
|
||||
auto [inserted, ok] = modules.emplace(key, std::move(mod));
|
||||
MFEM_VERIFY(ok, "failed to cache JIT module");
|
||||
return *inserted->second;
|
||||
}
|
||||
|
||||
static std::vector<std::string> DefaultExtraArgs()
|
||||
{
|
||||
return {"-fplugin=/Users/andrej1/local/enzyme/lib/ClangEnzyme-20.dylib"};
|
||||
}
|
||||
|
||||
std::string qfunc_name = "qfunc_wrapper";
|
||||
std::string fn;
|
||||
size_t nparams = 0;
|
||||
std::vector<bool> activity_map;
|
||||
std::vector<std::string> param_types;
|
||||
std::string return_type;
|
||||
bool return_is_void = false;
|
||||
std::string impl_type_name;
|
||||
std::vector<std::string> jit_var_names;
|
||||
std::unordered_map<std::string, std::unique_ptr<proteus::CppJitModule>> modules;
|
||||
};
|
||||
|
||||
int main()
|
||||
{
|
||||
const size_t N = 4;
|
||||
const size_t M = 5;
|
||||
const double A = 123.4;
|
||||
|
||||
std::vector<double> X(N);
|
||||
std::vector<double> Y(N);
|
||||
for (size_t i = 0; i < N; ++i)
|
||||
{
|
||||
X[i] = static_cast<double>(i + 1);
|
||||
Y[i] = static_cast<double>(N - i);
|
||||
}
|
||||
|
||||
// // >>> user interface calls
|
||||
// const std::string kernel_path = std::string(util::thisFileDir) +
|
||||
// "/jitplayground.hpp";
|
||||
// JitQFunction qf(daxpy_op{}, kernel_path, std::array{false, true, false});
|
||||
// // <<< user interface calls
|
||||
|
||||
// // this will happen internally in dFEM
|
||||
|
||||
daxpy_op op;
|
||||
printf("\n\nfunction call\n");
|
||||
op(&A, X.data(), Y.data(), &N);
|
||||
|
||||
// reset X for the derivative test
|
||||
for (size_t i = 0; i < N; ++i)
|
||||
{
|
||||
X[i] = static_cast<double>(i + 1);
|
||||
Y[i] = static_cast<double>(N - i);
|
||||
}
|
||||
|
||||
std::vector<double> dX(N, 1.0);
|
||||
printf("\n\nforward diff call\n");
|
||||
daxpy_op_fwddiff(&A, X.data(), dX.data(), Y.data(), &N);
|
||||
|
||||
std::vector<double> dX_manual(N, A);
|
||||
|
||||
printf("\n\nderivative checks\n");
|
||||
std::cout << "dX: ";
|
||||
for (size_t i = 0; i < N; ++i)
|
||||
{
|
||||
std::cout << dX[i] << (i + 1 == N ? '\n' : ' ');
|
||||
}
|
||||
|
||||
std::cout << "dX_manual: ";
|
||||
for (size_t i = 0; i < N; ++i)
|
||||
{
|
||||
std::cout << dX_manual[i] << (i + 1 == N ? '\n' : ' ');
|
||||
}
|
||||
|
||||
double max_abs_err = 0.0;
|
||||
for (size_t i = 0; i < N; ++i)
|
||||
{
|
||||
max_abs_err = std::max(max_abs_err, std::abs(dX[i] - dX_manual[i]));
|
||||
}
|
||||
std::cout << "max |dX - dX_manual| = " << max_abs_err << "\n";
|
||||
|
||||
return 0;
|
||||
}
|
||||
@@ -0,0 +1,58 @@
|
||||
#pragma once
|
||||
|
||||
#include <cstddef>
|
||||
#include <vector>
|
||||
#include <type_traits>
|
||||
|
||||
#include "proteus/JitInterface.h"
|
||||
|
||||
struct daxpy_op
|
||||
{
|
||||
void operator()(
|
||||
const double *a,
|
||||
double *x,
|
||||
const double *y,
|
||||
const size_t *N) const
|
||||
{
|
||||
const size_t n = *N;
|
||||
auto lam = [=, n = proteus::jit_variable(n)]
|
||||
() __attribute__((annotate("jit")))
|
||||
{
|
||||
printf("N = %zu\n", n);
|
||||
for (size_t i = 0; i < n; ++i)
|
||||
{
|
||||
printf("x[%zu] = %f, y[%zu] = %f\n", i, x[i], i, y[i]);
|
||||
x[i] = *a * x[i] + y[i];
|
||||
printf("updated x[%zu] = %f\n", i, x[i]);
|
||||
}
|
||||
};
|
||||
|
||||
proteus::register_lambda(lam);
|
||||
|
||||
lam();
|
||||
}
|
||||
};
|
||||
|
||||
template <typename return_type, typename... Args>
|
||||
return_type __enzyme_fwddiff(Args...);
|
||||
|
||||
extern int enzyme_const;
|
||||
extern int enzyme_dup;
|
||||
|
||||
void daxpy_op_wrapper(const double * Arg0, double * Arg1,
|
||||
const double * Arg2, const size_t *Arg3)
|
||||
{
|
||||
daxpy_op qf;
|
||||
qf(Arg0, Arg1, Arg2, Arg3);
|
||||
}
|
||||
|
||||
void daxpy_op_fwddiff(const double * Arg0, double * Arg1,
|
||||
double * dArg1, const double * Arg2, const size_t *Arg3)
|
||||
{
|
||||
__enzyme_fwddiff<void>(
|
||||
(void*)daxpy_op_wrapper,
|
||||
enzyme_const, Arg0,
|
||||
enzyme_dup, Arg1, dArg1,
|
||||
enzyme_const, Arg2,
|
||||
enzyme_const, Arg3);
|
||||
}
|
||||
@@ -157,6 +157,8 @@ ex37-test-seq: ex37
|
||||
@$(call mfem-test,$<,, Serial example,-mi 3)
|
||||
ex37p-test-par: ex37p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-mi 3)
|
||||
ex39-test-seq: ex39
|
||||
@$(call mfem-test,$<,, Serial example,-m ../data/compass.mesh)
|
||||
ex41-test-seq: ex41
|
||||
@$(call mfem-test,$<,, Serial example,-tf 1.0)
|
||||
ex41p-test-par: ex41p
|
||||
|
||||
+20
-13
@@ -121,6 +121,11 @@ set(SRCS
|
||||
qinterp/eval_hdiv.cpp
|
||||
qinterp/grad_by_nodes.cpp
|
||||
qinterp/grad_by_vdim.cpp
|
||||
qinterp/grad_transpose.cpp
|
||||
qinterp/grad_transpose_by_nodes.cpp
|
||||
qinterp/grad_transpose_by_vdim.cpp
|
||||
qinterp/eval_transpose.cpp
|
||||
qinterp/eval_transpose_by_vdim.cpp
|
||||
qspace.cpp
|
||||
quadinterpolator.cpp
|
||||
quadinterpolator_face.cpp
|
||||
@@ -133,7 +138,7 @@ set(SRCS
|
||||
tmop/assemble/diag2.cpp
|
||||
tmop/assemble/grad2_limit.cpp
|
||||
tmop/assemble/grad2.cpp
|
||||
tmop/assemble/diag3_limit.cpp
|
||||
tmop/assemble/diag3_limit.cpp
|
||||
tmop/assemble/diag3.cpp
|
||||
tmop/assemble/grad3_limit.cpp
|
||||
tmop/assemble/grad3.cpp
|
||||
@@ -278,8 +283,10 @@ set(HDRS
|
||||
qfunction.hpp
|
||||
qinterp/det.hpp
|
||||
qinterp/eval.hpp
|
||||
qinterp/eval_transpose.hpp
|
||||
qinterp/eval_hdiv.hpp
|
||||
qinterp/grad.hpp
|
||||
qinterp/grad_transpose.hpp
|
||||
qspace.hpp
|
||||
quadinterpolator.hpp
|
||||
quadinterpolator_face.hpp
|
||||
@@ -313,36 +320,36 @@ set(HDRS
|
||||
)
|
||||
|
||||
if (MFEM_USE_SIDRE)
|
||||
list(APPEND SRCS sidredatacollection.cpp)
|
||||
list(APPEND HDRS sidredatacollection.hpp)
|
||||
list(APPEND SRCS sidredatacollection.cpp)
|
||||
list(APPEND HDRS sidredatacollection.hpp)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_CONDUIT)
|
||||
list(APPEND SRCS conduitdatacollection.cpp)
|
||||
list(APPEND HDRS conduitdatacollection.hpp)
|
||||
list(APPEND SRCS conduitdatacollection.cpp)
|
||||
list(APPEND HDRS conduitdatacollection.hpp)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_ADIOS2)
|
||||
list(APPEND SRCS adios2datacollection.cpp)
|
||||
list(APPEND HDRS adios2datacollection.hpp)
|
||||
list(APPEND SRCS adios2datacollection.cpp)
|
||||
list(APPEND HDRS adios2datacollection.hpp)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_FMS)
|
||||
list(APPEND SRCS fmsdatacollection.cpp fmsconvert.cpp)
|
||||
list(APPEND HDRS fmsdatacollection.hpp fmsconvert.hpp)
|
||||
list(APPEND SRCS fmsdatacollection.cpp fmsconvert.cpp)
|
||||
list(APPEND HDRS fmsdatacollection.hpp fmsconvert.hpp)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_MPI)
|
||||
list(APPEND SRCS
|
||||
list(APPEND SRCS
|
||||
pbilinearform.cpp
|
||||
pfespace.cpp
|
||||
pgridfunc.cpp
|
||||
plinearform.cpp
|
||||
pnonlinearform.cpp
|
||||
prestriction.cpp)
|
||||
# If this list (HDRS -> HEADERS) is used for install, we probably want the
|
||||
# headers added all the time.
|
||||
list(APPEND HDRS
|
||||
# If this list (HDRS -> HEADERS) is used for install, we probably want the
|
||||
# headers added all the time.
|
||||
list(APPEND HDRS
|
||||
pbilinearform.hpp
|
||||
pfespace.hpp
|
||||
pgridfunc.hpp
|
||||
|
||||
@@ -729,7 +729,8 @@ void BilinearForm::Assemble(int skip_zeros)
|
||||
tr = mesh -> GetBdrFaceTransformations (i);
|
||||
if (tr != NULL)
|
||||
{
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs);
|
||||
mfem::DofTransformation doftrans;
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs, doftrans);
|
||||
fe1 = fes -> GetFE (tr -> Elem1No);
|
||||
// The fe2 object is really a dummy and not used on the boundaries,
|
||||
// but we can't dereference a NULL pointer, and we don't want to
|
||||
@@ -743,6 +744,7 @@ void BilinearForm::Assemble(int skip_zeros)
|
||||
|
||||
boundary_face_integs[k] -> AssembleFaceMatrix (*fe1, *fe2, *tr,
|
||||
elemmat);
|
||||
doftrans.TransformDual(elemmat);
|
||||
mat -> AddSubMatrix (vdofs, vdofs, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
@@ -1723,6 +1725,7 @@ void MixedBilinearForm::Assemble(int skip_zeros)
|
||||
}
|
||||
}
|
||||
|
||||
DofTransformation dom_dof_trans, ran_dof_trans;
|
||||
for (int i = 0; i < trial_fes -> GetNBE(); i++)
|
||||
{
|
||||
const int bdr_attr = mesh->GetBdrAttribute(i);
|
||||
@@ -1731,8 +1734,8 @@ void MixedBilinearForm::Assemble(int skip_zeros)
|
||||
ftr = mesh -> GetBdrFaceTransformations (i);
|
||||
if (ftr != NULL)
|
||||
{
|
||||
trial_fes->GetElementVDofs(ftr->Elem1No, trial_vdofs);
|
||||
test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs);
|
||||
trial_fes->GetElementVDofs(ftr->Elem1No, trial_vdofs, dom_dof_trans);
|
||||
test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs, ran_dof_trans);
|
||||
trial_fe1 = trial_fes->GetFE(ftr->Elem1No);
|
||||
test_fe1 = test_fes->GetFE(ftr->Elem1No);
|
||||
// The test_fe2 object is really a dummy and not used on the
|
||||
@@ -1748,6 +1751,7 @@ void MixedBilinearForm::Assemble(int skip_zeros)
|
||||
boundary_face_integs[k]->AssembleFaceMatrix(*trial_fe1, *test_fe1, *trial_fe2,
|
||||
*test_fe2,
|
||||
*ftr, elemmat);
|
||||
TransformDual(ran_dof_trans, dom_dof_trans, elemmat);
|
||||
mat->AddSubMatrix(test_vdofs, trial_vdofs, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
|
||||
+2
-1
@@ -2209,6 +2209,7 @@ private:
|
||||
const FiniteElementSpace *fespace;
|
||||
const DofToQuad *maps; ///< Not owned
|
||||
const GeometricFactors *geom; ///< Not owned
|
||||
public:
|
||||
int dim, ne, dofs1D, quad1D;
|
||||
Vector pa_data;
|
||||
bool symmetric = true; ///< False if using a nonsymmetric matrix coefficient
|
||||
@@ -2710,7 +2711,7 @@ public:
|
||||
|
||||
|
||||
/** Integrator for $(-Q u, \nabla v)$ for Nedelec ($u$) and $H^1$ ($v$) elements.
|
||||
This is equivalent to a weak divergence of the $H(curl$ basis functions. */
|
||||
This is equivalent to a weak divergence of the $H(curl)$ basis functions. */
|
||||
class VectorFEWeakDivergenceIntegrator: public BilinearFormIntegrator
|
||||
{
|
||||
protected:
|
||||
|
||||
@@ -52,6 +52,9 @@ public:
|
||||
/// Get the time for time dependent coefficients
|
||||
real_t GetTime() { return time; }
|
||||
|
||||
/// Returns dimension of the vector.
|
||||
int GetVDim() { return 1; }
|
||||
|
||||
/** @brief Evaluate the coefficient in the element described by @a T at the
|
||||
point @a ip. */
|
||||
/** @note When this method is called, the caller must make sure that the
|
||||
|
||||
@@ -82,6 +82,25 @@ public:
|
||||
/// underlying #fes
|
||||
int VectorDim() const;
|
||||
|
||||
/// Copy assignment. Only the data of the base class Vector is copied.
|
||||
/** It is assumed that this object and @a rhs use FiniteElementSpace%s that
|
||||
have the same size.
|
||||
|
||||
@note Defining this method overwrites the implicitly defined copy
|
||||
assignment operator. */
|
||||
ComplexGridFunction &operator=(const ComplexGridFunction &rhs)
|
||||
{ return operator=((const Vector &)rhs); }
|
||||
|
||||
/// Copy the data from @a v.
|
||||
/** The size of @a v must be equal to double of the size of the associated
|
||||
FiniteElementSpace #fes. */
|
||||
ComplexGridFunction &operator=(const Vector &v)
|
||||
{
|
||||
MFEM_ASSERT(fes && v.Size() == 2*fes->GetVSize(), "");
|
||||
Vector::operator=(v);
|
||||
return *this;
|
||||
}
|
||||
|
||||
/// Assign constant values to the ComplexGridFunction data.
|
||||
ComplexGridFunction &operator=(const std::complex<real_t> & value)
|
||||
{ *gfr = value.real(); *gfi = value.imag(); return *this; }
|
||||
|
||||
+18
-5
@@ -492,6 +492,8 @@ void VisItDataCollection::SaveRootFile()
|
||||
to_padded_string(cycle, pad_digits_cycle) +
|
||||
".mfem_root";
|
||||
std::ofstream root_file(root_name);
|
||||
MFEM_VERIFY(root_file.is_open(),
|
||||
"Failed to open ofstream " << root_name);
|
||||
root_file << GetVisItRootString();
|
||||
if (!root_file)
|
||||
{
|
||||
@@ -977,7 +979,10 @@ void ParaViewDataCollection::Save()
|
||||
// Save the local part of the mesh and grid functions fields to the local
|
||||
// VTU file. Also save coefficient fields.
|
||||
{
|
||||
std::ofstream os(vtu_prefix + GenerateVTUFileName("proc", myid));
|
||||
std::string os_str = vtu_prefix + GenerateVTUFileName("proc", myid);
|
||||
std::ofstream os(os_str);
|
||||
MFEM_VERIFY(os.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
os.precision(precision);
|
||||
SaveDataVTU(os, levels_of_detail);
|
||||
}
|
||||
@@ -989,7 +994,10 @@ void ParaViewDataCollection::Save()
|
||||
"QuadratureFunction output is not supported for "
|
||||
"ParaViewDataCollection on domain boundary!");
|
||||
const std::string &field_name = qfield.first;
|
||||
std::ofstream os(vtu_prefix + GenerateVTUFileName(field_name, myid));
|
||||
std::string os_str = vtu_prefix + GenerateVTUFileName(field_name, myid);
|
||||
std::ofstream os(os_str);
|
||||
MFEM_VERIFY(os.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
qfield.second->SaveVTU(os, pv_data_format, GetCompressionLevel(), field_name);
|
||||
}
|
||||
|
||||
@@ -1000,7 +1008,10 @@ void ParaViewDataCollection::Save()
|
||||
{
|
||||
// Create the main PVTU file
|
||||
{
|
||||
std::ofstream pvtu_out(vtu_prefix + GeneratePVTUFileName("data"));
|
||||
std::string os_str = vtu_prefix + GeneratePVTUFileName("data");
|
||||
std::ofstream pvtu_out(os_str);
|
||||
MFEM_VERIFY(pvtu_out.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
WritePVTUHeader(pvtu_out);
|
||||
|
||||
// Grid function fields and coefficient fields
|
||||
@@ -1055,8 +1066,10 @@ void ParaViewDataCollection::Save()
|
||||
const std::string &q_field_name = q_field.first;
|
||||
std::string q_fname = GeneratePVTUPath() + "/"
|
||||
+ GeneratePVTUFileName(q_field_name);
|
||||
|
||||
std::ofstream pvtu_out(col_path + "/" + q_fname);
|
||||
std::string os_str = col_path + "/" + q_fname;
|
||||
std::ofstream pvtu_out(os_str);
|
||||
MFEM_VERIFY(pvtu_out.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
WritePVTUHeader(pvtu_out);
|
||||
int vec_dim = q_field.second->GetVDim();
|
||||
pvtu_out << "<PPointData>\n";
|
||||
|
||||
@@ -0,0 +1,111 @@
|
||||
#pragma once
|
||||
|
||||
#include "../util.hpp"
|
||||
#include "../../integrator_ctx.hpp"
|
||||
|
||||
#include <utility>
|
||||
|
||||
namespace mfem::future
|
||||
{
|
||||
|
||||
namespace GlobalQFImpl
|
||||
{
|
||||
|
||||
template<
|
||||
typename qfunc_t,
|
||||
typename inputs_t,
|
||||
typename outputs_t,
|
||||
size_t ninputs = tuple_size<inputs_t>::value,
|
||||
size_t noutputs = tuple_size<outputs_t>::value>
|
||||
struct Action
|
||||
{
|
||||
Action(
|
||||
IntegratorContext ctx,
|
||||
qfunc_t qfunc,
|
||||
inputs_t inputs,
|
||||
outputs_t outputs) :
|
||||
ctx(ctx),
|
||||
qfunc(std::move(qfunc)),
|
||||
inputs(inputs),
|
||||
outputs(outputs)
|
||||
{
|
||||
create_fop_to_fd(inputs, ctx.infds, input_to_infd);
|
||||
create_fop_to_fd(outputs, ctx.outfds, output_to_outfd);
|
||||
|
||||
check_consistency(inputs, input_to_infd, ctx.infds);
|
||||
check_consistency(outputs, output_to_outfd, ctx.outfds);
|
||||
|
||||
create_fieldbases(inputs, input_to_infd, ctx.infds, ctx.ir, input_bases);
|
||||
create_fieldbases(outputs, output_to_outfd, ctx.outfds, ctx.ir, output_bases);
|
||||
|
||||
create_qlayouts(inputs, ctx.in_qlayouts, input_qlayouts);
|
||||
create_qlayouts(outputs, ctx.out_qlayouts, output_qlayouts);
|
||||
|
||||
const int nqp = ctx.ir.GetNPoints();
|
||||
gnqp = nqp * ctx.nentities;
|
||||
|
||||
xq_offsets.SetSize(ninputs + 1);
|
||||
xq_offsets[0] = 0;
|
||||
constexpr_for<0, ninputs>([&](auto i)
|
||||
{
|
||||
const auto input = get<i>(inputs);
|
||||
xq_offsets[i + 1] = nqp * input.size_on_qp * ctx.nentities;
|
||||
});
|
||||
xq_offsets.PartialSum();
|
||||
xq.Update(xq_offsets);
|
||||
|
||||
yq_offsets.SetSize(noutputs + 1);
|
||||
yq_offsets[0] = 0;
|
||||
constexpr_for<0, noutputs>([&](auto i)
|
||||
{
|
||||
const auto output = get<i>(outputs);
|
||||
yq_offsets[i + 1] = nqp * output.size_on_qp * ctx.nentities;
|
||||
});
|
||||
yq_offsets.PartialSum();
|
||||
yq.Update(yq_offsets);
|
||||
}
|
||||
|
||||
void operator()(
|
||||
const std::vector<Vector *> &xe,
|
||||
std::vector<Vector *> &ye) const
|
||||
{
|
||||
if (ctx.attr.Size() == 0) { return; }
|
||||
|
||||
// E -> Q
|
||||
interpolate(input_to_infd, input_bases, xe, xq);
|
||||
|
||||
// Q -> Q
|
||||
static_assert(
|
||||
detail::supports_tensor_array_qfunc<qfunc_t, inputs_t, outputs_t>::value,
|
||||
"qfunc signature not supported by default backend Action");
|
||||
|
||||
detail::call_qfunc(
|
||||
qfunc, xq, yq, gnqp, input_qlayouts, output_qlayouts,
|
||||
std::make_index_sequence<ninputs> {},
|
||||
std::make_index_sequence<noutputs> {});
|
||||
|
||||
// Q -> E
|
||||
integrate(output_to_outfd, output_bases, yq, ye);
|
||||
}
|
||||
|
||||
IntegratorContext ctx;
|
||||
qfunc_t qfunc;
|
||||
inputs_t inputs;
|
||||
outputs_t outputs;
|
||||
|
||||
std::array<size_t, ninputs> input_to_infd;
|
||||
std::array<size_t, noutputs> output_to_outfd;
|
||||
|
||||
std::array<FieldBasis, ninputs> input_bases;
|
||||
std::array<FieldBasis, noutputs> output_bases;
|
||||
|
||||
std::array<std::vector<int>, ninputs> input_qlayouts;
|
||||
std::array<std::vector<int>, noutputs> output_qlayouts;
|
||||
|
||||
int gnqp = 0;
|
||||
Array<int> xq_offsets, yq_offsets;
|
||||
mutable BlockVector xq, yq;
|
||||
};
|
||||
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,131 @@
|
||||
#pragma once
|
||||
|
||||
#include "../fem/quadinterpolator.hpp"
|
||||
#include "../../integrator_ctx.hpp"
|
||||
#include "../util.hpp"
|
||||
#include <utility>
|
||||
|
||||
namespace mfem::future
|
||||
{
|
||||
|
||||
namespace GlobalQFImpl
|
||||
{
|
||||
|
||||
template<
|
||||
int derivative_id,
|
||||
typename qfunc_t,
|
||||
typename inputs_t,
|
||||
typename outputs_t,
|
||||
size_t ninputs = tuple_size<inputs_t>::value,
|
||||
size_t noutputs = tuple_size<outputs_t>::value>
|
||||
struct DerivativeActionEnzyme
|
||||
{
|
||||
DerivativeActionEnzyme(
|
||||
IntegratorContext ctx,
|
||||
qfunc_t &qfunc,
|
||||
inputs_t inputs,
|
||||
outputs_t outputs) :
|
||||
ctx(ctx),
|
||||
qfunc(qfunc),
|
||||
inputs(inputs),
|
||||
outputs(outputs)
|
||||
{
|
||||
create_fop_to_fd(inputs, ctx.infds, input_to_infd);
|
||||
create_fop_to_fd(outputs, ctx.outfds, output_to_outfd);
|
||||
|
||||
check_consistency(inputs, input_to_infd, ctx.infds);
|
||||
check_consistency(outputs, output_to_outfd, ctx.outfds);
|
||||
|
||||
create_fieldbases(inputs, input_to_infd, ctx.infds, ctx.ir, input_bases);
|
||||
create_fieldbases(outputs, output_to_outfd, ctx.outfds, ctx.ir, output_bases);
|
||||
|
||||
create_qlayouts(inputs, ctx.in_qlayouts, input_qlayouts);
|
||||
create_qlayouts(outputs, ctx.out_qlayouts, output_qlayouts);
|
||||
|
||||
const int nqp = ctx.ir.GetNPoints();
|
||||
gnqp = nqp * ctx.nentities;
|
||||
|
||||
xq_offsets.SetSize(ninputs + 1);
|
||||
xq_offsets[0] = 0;
|
||||
constexpr_for<0, ninputs>([&](auto i)
|
||||
{
|
||||
const auto input = get<i>(inputs);
|
||||
xq_offsets[i + 1] = nqp * input.size_on_qp * ctx.nentities;
|
||||
});
|
||||
xq_offsets.PartialSum();
|
||||
xq.Update(xq_offsets);
|
||||
|
||||
yq_offsets.SetSize(noutputs + 1);
|
||||
yq_offsets[0] = 0;
|
||||
constexpr_for<0, noutputs>([&](auto i)
|
||||
{
|
||||
const auto output = get<i>(outputs);
|
||||
yq_offsets[i + 1] = nqp * output.size_on_qp * ctx.nentities;
|
||||
});
|
||||
yq_offsets.PartialSum();
|
||||
yq.Update(yq_offsets);
|
||||
|
||||
// For each dependent input in the dependency map we create a shadow
|
||||
// memory variable at the quadrature point level.
|
||||
const auto activity_map = detail::make_activity_map<derivative_id>(inputs);
|
||||
shadow_xq_offsets.SetSize(ninputs + 1);
|
||||
shadow_xq_offsets = 0;
|
||||
constexpr_for<0, ninputs>([&](auto i)
|
||||
{
|
||||
if (activity_map[i])
|
||||
{
|
||||
shadow_xq_offsets[i + 1] =
|
||||
xq_offsets[i + 1] - xq_offsets[i];;
|
||||
}
|
||||
});
|
||||
shadow_xq_offsets.PartialSum();
|
||||
shadow_xq.Update(shadow_xq_offsets);
|
||||
}
|
||||
|
||||
void operator()(
|
||||
const std::vector<Vector *> &xe,
|
||||
const Vector *de,
|
||||
std::vector<Vector *> &ye) const
|
||||
{
|
||||
if (ctx.attr.Size() == 0) { return; }
|
||||
// E -> Q
|
||||
interpolate(input_to_infd, input_bases, xe, xq);
|
||||
|
||||
const auto activity_map = detail::make_activity_map<derivative_id>(inputs);
|
||||
interpolate(input_to_infd, input_bases, xe, shadow_xq, activity_map);
|
||||
|
||||
// Q -> Q
|
||||
static_assert(
|
||||
detail::supports_tensor_array_qfunc<qfunc_t, inputs_t, outputs_t>::value,
|
||||
"qfunc signature not supported by default backend Action");
|
||||
|
||||
detail::enzyme_fwddiff<derivative_id, qfunc_t, inputs_t, outputs_t>(
|
||||
qfunc, xq, shadow_xq, yq, gnqp, input_qlayouts, output_qlayouts,
|
||||
std::make_index_sequence<ninputs> {},
|
||||
std::make_index_sequence<noutputs> {});
|
||||
|
||||
// Q -> E
|
||||
integrate(output_to_outfd, output_bases, yq, ye);
|
||||
}
|
||||
|
||||
IntegratorContext ctx;
|
||||
qfunc_t &qfunc;
|
||||
inputs_t inputs;
|
||||
outputs_t outputs;
|
||||
|
||||
std::array<size_t, ninputs> input_to_infd;
|
||||
std::array<size_t, noutputs> output_to_outfd;
|
||||
|
||||
std::array<FieldBasis, ninputs> input_bases;
|
||||
std::array<FieldBasis, noutputs> output_bases;
|
||||
|
||||
std::array<std::vector<int>, ninputs> input_qlayouts;
|
||||
std::array<std::vector<int>, noutputs> output_qlayouts;
|
||||
|
||||
int gnqp = 0;
|
||||
Array<int> xq_offsets, shadow_xq_offsets, yq_offsets;
|
||||
mutable BlockVector xq, shadow_xq, yq;
|
||||
};
|
||||
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,42 @@
|
||||
#pragma once
|
||||
|
||||
#include "action.hpp"
|
||||
#include "derivative_action_enzyme.hpp"
|
||||
|
||||
namespace mfem::future
|
||||
{
|
||||
|
||||
struct GlobalQFBackend
|
||||
{
|
||||
template<
|
||||
typename qfunc_t,
|
||||
typename inputs_t,
|
||||
typename outputs_t>
|
||||
auto static MakeAction(
|
||||
const IntegratorContext &ctx,
|
||||
qfunc_t qfunc,
|
||||
inputs_t inputs,
|
||||
outputs_t outputs)
|
||||
{
|
||||
return GlobalQFImpl::Action(ctx, qfunc, inputs, outputs);
|
||||
}
|
||||
|
||||
template<
|
||||
int derivative_id,
|
||||
typename qfunc_t,
|
||||
typename inputs_t,
|
||||
typename outputs_t>
|
||||
auto static MakeDerivativeAction(
|
||||
const IntegratorContext &ctx,
|
||||
qfunc_t qfunc,
|
||||
inputs_t inputs,
|
||||
outputs_t outputs)
|
||||
{
|
||||
return GlobalQFImpl::DerivativeActionEnzyme<
|
||||
derivative_id, qfunc_t, inputs_t, outputs_t>(
|
||||
ctx, qfunc, inputs, outputs);
|
||||
}
|
||||
|
||||
};
|
||||
|
||||
}
|
||||
@@ -0,0 +1,166 @@
|
||||
#pragma once
|
||||
|
||||
#include "../util.hpp"
|
||||
#include "../../integrator_ctx.hpp"
|
||||
|
||||
#include <utility>
|
||||
|
||||
namespace mfem::future
|
||||
{
|
||||
|
||||
namespace LocalQFImpl
|
||||
{
|
||||
|
||||
template<
|
||||
typename qfunc_t,
|
||||
typename inputs_t,
|
||||
typename outputs_t,
|
||||
size_t ninputs = tuple_size<inputs_t>::value,
|
||||
size_t noutputs = tuple_size<outputs_t>::value>
|
||||
struct Action
|
||||
{
|
||||
Action(
|
||||
IntegratorContext ctx,
|
||||
qfunc_t qfunc,
|
||||
inputs_t inputs,
|
||||
outputs_t outputs) :
|
||||
ctx(ctx),
|
||||
qfunc(std::move(qfunc)),
|
||||
inputs(inputs),
|
||||
outputs(outputs)
|
||||
{
|
||||
create_fop_to_fd(inputs, ctx.infds, input_to_infd);
|
||||
create_fop_to_fd(outputs, ctx.outfds, output_to_outfd);
|
||||
|
||||
check_consistency(inputs, input_to_infd, ctx.infds);
|
||||
check_consistency(outputs, output_to_outfd, ctx.outfds);
|
||||
|
||||
const int nqp = ctx.ir.GetNPoints();
|
||||
|
||||
// Initialize DofToQuad maps for inputs
|
||||
for_constexpr<ninputs>([&](auto i)
|
||||
{
|
||||
const auto &fd = ctx.infds[input_to_infd[i]];
|
||||
std::visit([&](auto* space_ptr)
|
||||
{
|
||||
using T = std::decay_t<decltype(*space_ptr)>;
|
||||
if constexpr (std::is_same_v<T, FiniteElementSpace> ||
|
||||
std::is_same_v<T, ParFiniteElementSpace>)
|
||||
{
|
||||
const auto *fe = space_ptr->GetTypicalFE();
|
||||
input_dtq_maps[i] = &fe->GetDofToQuad(ctx.ir, DofToQuad::TENSOR);
|
||||
}
|
||||
}, fd.data);
|
||||
});
|
||||
|
||||
// Initialize DofToQuad maps for outputs
|
||||
for_constexpr<noutputs>([&](auto i)
|
||||
{
|
||||
const auto &fd = ctx.outfds[output_to_outfd[i]];
|
||||
std::visit([&](auto* space_ptr)
|
||||
{
|
||||
using T = std::decay_t<decltype(*space_ptr)>;
|
||||
if constexpr (std::is_same_v<T, FiniteElementSpace> ||
|
||||
std::is_same_v<T, ParFiniteElementSpace>)
|
||||
{
|
||||
const auto *fe = space_ptr->GetTypicalFE();
|
||||
output_dtq_maps[i] = &fe->GetDofToQuad(ctx.ir, DofToQuad::TENSOR);
|
||||
}
|
||||
}, fd.data);
|
||||
});
|
||||
}
|
||||
|
||||
void operator()(
|
||||
const std::vector<Vector *> &xe,
|
||||
std::vector<Vector *> &ye) const
|
||||
{
|
||||
if (ctx.attr.Size() == 0) { return; }
|
||||
|
||||
// input_dtq_maps
|
||||
|
||||
// const auto B = (const real_t*)input_dtq_maps[0/*i*/].B;
|
||||
// const auto G = (const real_t*)input_dtq_maps[0/*i*/].G;
|
||||
|
||||
// dfem::forall<T_Q1D*T_Q1D*T_Q1D>([=] MFEM_HOST_DEVICE (int e, void *)
|
||||
// {
|
||||
// if (has_attr && !d_attr[d_elem_attr[e] - 1]) { return; }
|
||||
|
||||
// constexpr int MQ1 = T_Q1D > 0 ? T_Q1D : 8;
|
||||
|
||||
// MFEM_SHARED real_t sm0[MQ1][MQ1][MQ1][3];
|
||||
// MFEM_SHARED real_t sm1[MQ1][MQ1][MQ1][3];
|
||||
|
||||
// low::regs3d_t<DIM, MQ1> reg;
|
||||
// const real_t *rd = dx_ptr;
|
||||
|
||||
// MFEM_SHARED real_t sB[MQ1][MQ1], sG[MQ1][MQ1];
|
||||
// {
|
||||
// low::LoadMatrix(d1d, q1d, B, sB);
|
||||
// low::LoadMatrix(d1d, q1d, G, sG);
|
||||
// {
|
||||
// low::LoadDofs3d(e, d1d, XE, sm0);
|
||||
// low::Grad3d(d1d, q1d, sB, sG, sm0, sm1, reg);
|
||||
// }
|
||||
// }
|
||||
// // else if constexpr (is_identity_fop<field_operator_t>::value) // Identity
|
||||
// {
|
||||
// // db1("Identity");
|
||||
// // rd = fields_e_ptr[input_to_field[i]];
|
||||
// // rd = dx_ptr;
|
||||
// }
|
||||
// }
|
||||
|
||||
// MFEM_FOREACH_THREAD_DIRECT(qz,z,q1d)
|
||||
// {
|
||||
// MFEM_FOREACH_THREAD_DIRECT(qy,y,q1d)
|
||||
// {
|
||||
// MFEM_FOREACH_THREAD_DIRECT(qx,x,q1d)
|
||||
// {
|
||||
|
||||
// auto args = decay_tuple<qf_param_ts> {};
|
||||
// get<0>(args) = as_tensor<real_t, 3>(®[qz][qy][qx][0]);
|
||||
// if constexpr (T_Q1D > 0)
|
||||
// {
|
||||
// get<1>(args) = as_tensor<real_t, 3, 3>(rd + 9*(qx*T_Q1D*T_Q1D + qy*T_Q1D + qz));
|
||||
// }
|
||||
// else
|
||||
// {
|
||||
// get<1>(args) = as_tensor<real_t, 3, 3>(rd + 9*(qx*q1d*q1d + qy*q1d + qz));
|
||||
// }
|
||||
// auto r = get<0>(apply(qfunc, args));
|
||||
// if constexpr (decltype(r)::ndim == 1)
|
||||
// {
|
||||
// as_tensor<real_t, 3>(®[qz][qy][qx][0]) = r;
|
||||
// }
|
||||
// else { static_assert(false); }
|
||||
// }
|
||||
// }
|
||||
// }
|
||||
// MFEM_SYNC_THREAD;
|
||||
// // Integrate
|
||||
// // if constexpr (is_gradient_fop<std::decay_t<output_fop_t>>::value) // Gradient
|
||||
// {
|
||||
// // const auto sB = reinterpret_cast<const real_t (*)[MQ1]>(Bo);
|
||||
// // const auto sG = reinterpret_cast<const real_t (*)[MQ1]>(Go);
|
||||
// low::GradTranspose3d(d1d, q1d, sB, sG, reg, sm1, sm0);
|
||||
// low::WriteDofs3d(d1d, 0, e, reg, YE);
|
||||
// }
|
||||
// },
|
||||
// num_entities, thread_blocks, 0, nullptr);
|
||||
}
|
||||
|
||||
|
||||
IntegratorContext ctx;
|
||||
qfunc_t qfunc;
|
||||
inputs_t inputs;
|
||||
outputs_t outputs;
|
||||
|
||||
std::array<size_t, ninputs> input_to_infd;
|
||||
std::array<size_t, noutputs> output_to_outfd;
|
||||
|
||||
std::array<const DofToQuad*, ninputs> input_dtq_maps;
|
||||
std::array<const DofToQuad*, noutputs> output_dtq_maps;
|
||||
};
|
||||
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,39 @@
|
||||
#pragma once
|
||||
|
||||
#include "../../integrator_ctx.hpp"
|
||||
#include "action.hpp"
|
||||
|
||||
namespace mfem::future
|
||||
{
|
||||
|
||||
struct LocalQFBackend
|
||||
{
|
||||
template<
|
||||
typename qfunc_t,
|
||||
typename inputs_t,
|
||||
typename outputs_t>
|
||||
auto static MakeAction(
|
||||
const IntegratorContext &ctx,
|
||||
qfunc_t qfunc,
|
||||
inputs_t inputs,
|
||||
outputs_t outputs)
|
||||
{
|
||||
return LocalQFImpl::Action(ctx, qfunc, inputs, outputs);
|
||||
}
|
||||
|
||||
template<
|
||||
int derivative_id,
|
||||
typename qfunc_t,
|
||||
typename inputs_t,
|
||||
typename outputs_t>
|
||||
auto static MakeDerivativeAction(
|
||||
const IntegratorContext &ctx,
|
||||
qfunc_t qfunc,
|
||||
inputs_t inputs,
|
||||
outputs_t outputs)
|
||||
{
|
||||
MFEM_ABORT("LocalQFBackend does not support derivative actions.");
|
||||
}
|
||||
};
|
||||
|
||||
}
|
||||
@@ -0,0 +1,659 @@
|
||||
#pragma once
|
||||
|
||||
#include "../fem/quadinterpolator.hpp"
|
||||
#include "../util.hpp"
|
||||
#include "general/enzyme.hpp"
|
||||
|
||||
namespace mfem::future
|
||||
{
|
||||
|
||||
template <size_t N, size_t... Is>
|
||||
constexpr std::array<bool, N> all_true_impl(std::index_sequence<Is...>)
|
||||
{
|
||||
return {{((void)Is, true)...}};
|
||||
}
|
||||
|
||||
template <size_t N>
|
||||
constexpr std::array<bool, N> all_true()
|
||||
{
|
||||
return all_true_impl<N>(std::make_index_sequence<N> {});
|
||||
}
|
||||
|
||||
struct FieldBasis
|
||||
{
|
||||
// E-vector -> Q-vector
|
||||
std::function<void(const Vector &, Vector &)> forward;
|
||||
|
||||
// Q-vector -> E-vector
|
||||
std::function<void(const Vector &, Vector &)> transpose;
|
||||
};
|
||||
|
||||
FieldBasis FromQI(const QuadratureInterpolator *qi,
|
||||
QuadratureInterpolator::EvalFlags mode)
|
||||
{
|
||||
return
|
||||
{
|
||||
[qi, mode](const Vector &xe, Vector &xq)
|
||||
{
|
||||
qi->SetOutputLayout(QVectorLayout::byVDIM);
|
||||
if (mode == QuadratureInterpolator::VALUES)
|
||||
{
|
||||
qi->Values(xe, xq);
|
||||
}
|
||||
else
|
||||
{
|
||||
qi->Derivatives(xe, xq);
|
||||
}
|
||||
},
|
||||
[qi, mode](const Vector &yq, Vector &ye)
|
||||
{
|
||||
Vector empty;
|
||||
qi->SetOutputLayout(QVectorLayout::byVDIM);
|
||||
if (mode == QuadratureInterpolator::VALUES)
|
||||
{
|
||||
qi->AddMultTranspose(QuadratureInterpolator::VALUES, yq, empty, ye);
|
||||
}
|
||||
else
|
||||
{
|
||||
qi->AddMultTranspose(QuadratureInterpolator::DERIVATIVES, empty, yq, ye);
|
||||
}
|
||||
}
|
||||
};
|
||||
}
|
||||
|
||||
// QuadratureFunction identity copy
|
||||
FieldBasis FromQF()
|
||||
{
|
||||
return
|
||||
{
|
||||
[](const Vector &xe, Vector &xq) { xq = xe; },
|
||||
[](const Vector &yq, Vector &ye) { ye = yq; }
|
||||
};
|
||||
}
|
||||
|
||||
// User-defined parameter space B
|
||||
FieldBasis FromPS(const Operator *B, const Operator *Bt)
|
||||
{
|
||||
return
|
||||
{
|
||||
[B](const Vector &xe, Vector &xq) { B->Mult(xe, xq); },
|
||||
[Bt](const Vector &yq, Vector &ye) { Bt->Mult(yq, ye); }
|
||||
};
|
||||
}
|
||||
|
||||
FieldBasis FieldBasisFromWeight(const IntegrationRule &ir)
|
||||
{
|
||||
return
|
||||
{
|
||||
[&ir](const Vector &, Vector &xq)
|
||||
{
|
||||
const int nqp = ir.GetNPoints();
|
||||
MFEM_ASSERT(xq.Size() % nqp == 0, "weight block has unexpected size");
|
||||
|
||||
const int ne = xq.Size() / nqp;
|
||||
const real_t *wref = ir.GetWeights().Read();
|
||||
|
||||
for (int e = 0; e < ne; e++)
|
||||
{
|
||||
std::memcpy(xq.GetData() + e*nqp, wref, nqp*sizeof(real_t));
|
||||
}
|
||||
},
|
||||
[](const Vector &, Vector &) {}
|
||||
};
|
||||
}
|
||||
|
||||
const FieldBasis GetFieldBasis(const FieldDescriptor &f,
|
||||
const IntegrationRule &ir,
|
||||
QuadratureInterpolator::EvalFlags mode)
|
||||
{
|
||||
return std::visit([&ir, &mode](auto && arg) -> FieldBasis
|
||||
{
|
||||
using T = std::decay_t<decltype(arg)>;
|
||||
|
||||
if constexpr (std::is_same_v<T, const FiniteElementSpace *>)
|
||||
{
|
||||
return FromQI(arg->GetQuadratureInterpolator(ir), mode);
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const ParFiniteElementSpace *>)
|
||||
{
|
||||
return FromQI(arg->GetQuadratureInterpolator(ir), mode);
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const QuadratureFunction *>)
|
||||
{
|
||||
return FromQF();
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const ParameterSpace *>)
|
||||
{
|
||||
return FromPS(arg->GetB(), arg->GetBt());
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const IntegrationRule *>)
|
||||
{
|
||||
return FieldBasis{};
|
||||
}
|
||||
else
|
||||
{
|
||||
static_assert(dfem::always_false<T>, "internal error");
|
||||
}
|
||||
}, f.data);
|
||||
}
|
||||
|
||||
template <typename fops_t, size_t nfops>
|
||||
void create_fieldbases(
|
||||
fops_t &fops,
|
||||
const std::array<size_t, nfops> &fop_to_fd,
|
||||
const std::vector<FieldDescriptor> &fds,
|
||||
const IntegrationRule &ir,
|
||||
std::array<FieldBasis, nfops> &bases)
|
||||
{
|
||||
constexpr_for<0, nfops>([&](auto i)
|
||||
{
|
||||
const auto fop = get<i>(fops);
|
||||
using fop_t = std::decay_t<decltype(fop)>;
|
||||
|
||||
const auto fd = fds[fop_to_fd[i]];
|
||||
|
||||
constexpr QuadratureInterpolator::EvalFlags dummy_mode =
|
||||
QuadratureInterpolator::VALUES;
|
||||
if constexpr (is_identity_fop<fop_t>::value)
|
||||
{
|
||||
bases[i] = GetFieldBasis(fd, ir, dummy_mode);
|
||||
}
|
||||
else if constexpr (is_weight_fop<fop_t>::value)
|
||||
{
|
||||
bases[i] = FieldBasisFromWeight(ir);
|
||||
}
|
||||
else if constexpr (is_value_fop<fop_t>::value)
|
||||
{
|
||||
bases[i] = GetFieldBasis(fd, ir, QuadratureInterpolator::VALUES);
|
||||
}
|
||||
else if constexpr (is_gradient_fop<fop_t>::value)
|
||||
{
|
||||
bases[i] = GetFieldBasis(fd, ir, QuadratureInterpolator::DERIVATIVES);
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template <typename fops_t, size_t nfops>
|
||||
void check_consistency(
|
||||
fops_t &fops,
|
||||
const std::array<size_t, nfops> &fop_to_fd,
|
||||
const std::vector<FieldDescriptor> &fields)
|
||||
{
|
||||
constexpr_for<0, nfops>([&](auto i)
|
||||
{
|
||||
const auto input = get<i>(fops);
|
||||
using input_t = std::decay_t<decltype(input)>;
|
||||
|
||||
const auto fd = fields[fop_to_fd[i]];
|
||||
|
||||
if constexpr (is_identity_fop<input_t>::value)
|
||||
{
|
||||
MFEM_ASSERT(std::holds_alternative<const QuadratureFunction *>(fd.data),
|
||||
"Identity FieldOperator requested on non "
|
||||
"QuadratureFunction");
|
||||
}
|
||||
else if constexpr (is_weight_fop<input_t>::value)
|
||||
{
|
||||
}
|
||||
else if constexpr (is_value_fop<input_t>::value)
|
||||
{
|
||||
MFEM_ASSERT(std::holds_alternative<const FiniteElementSpace *>(fd.data) ||
|
||||
std::holds_alternative<const ParFiniteElementSpace *>(fd.data) ||
|
||||
std::holds_alternative<const ParameterSpace *>(fd.data),
|
||||
"Value FieldOperator requested on non "
|
||||
"QuadratureFunction");
|
||||
}
|
||||
else if constexpr (is_gradient_fop<input_t>::value)
|
||||
{
|
||||
MFEM_ASSERT(std::holds_alternative<const FiniteElementSpace *>(fd.data) ||
|
||||
std::holds_alternative<const ParFiniteElementSpace *>(fd.data),
|
||||
"Value FieldOperator requested on non "
|
||||
"QuadratureFunction");
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template <size_t ninputs>
|
||||
void interpolate(
|
||||
const std::array<size_t, ninputs> &input_to_infd,
|
||||
const std::array<FieldBasis, ninputs> &input_bases,
|
||||
const std::vector<Vector *> &xe,
|
||||
BlockVector &xq,
|
||||
const std::array<bool, ninputs> &conditional = all_true<ninputs>())
|
||||
{
|
||||
constexpr_for<0, ninputs>([&](auto i)
|
||||
{
|
||||
if (!conditional.empty() && !conditional[i]) { return; }
|
||||
|
||||
input_bases[i].forward(*xe[input_to_infd[i]], xq.GetBlock(i));
|
||||
});
|
||||
}
|
||||
|
||||
template <size_t noutputs>
|
||||
void integrate(
|
||||
const std::array<size_t, noutputs> &output_to_outfd,
|
||||
const std::array<FieldBasis, noutputs> &output_bases,
|
||||
const BlockVector &yq,
|
||||
std::vector<Vector *> &ye)
|
||||
{
|
||||
for (auto v : ye) { *v = 0.0; }
|
||||
|
||||
constexpr_for<0, noutputs>([&](auto i)
|
||||
{
|
||||
output_bases[i].transpose(yq.GetBlock(i), *ye[output_to_outfd[i]]);
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
namespace detail
|
||||
{
|
||||
|
||||
template <typename T>
|
||||
struct is_tensor_array : std::false_type {};
|
||||
|
||||
template <typename scalar_t, int... Dims>
|
||||
struct is_tensor_array<tensor_array<scalar_t, Dims...>> : std::true_type {};
|
||||
|
||||
template <typename T>
|
||||
struct is_tensor_array_mut : std::false_type {};
|
||||
|
||||
template <typename scalar_t, int... Dims>
|
||||
struct is_tensor_array_mut<tensor_array<scalar_t, Dims...>> :
|
||||
std::bool_constant<!std::is_const_v<scalar_t>> {};
|
||||
|
||||
|
||||
template <typename ndarray_t>
|
||||
inline void set_layout_default(ndarray_t &a)
|
||||
{
|
||||
if constexpr (ndarray_t::tensor_rank() == 0) { return; }
|
||||
|
||||
constexpr std::size_t nd = ndarray_t::rank();
|
||||
constexpr std::size_t td = ndarray_t::tensor_rank();
|
||||
std::array<std::size_t, nd + td> perm{};
|
||||
|
||||
for (std::size_t i = 0; i < td; i++) { perm[i] = nd + i; }
|
||||
for (std::size_t i = 0; i < nd; i++) { perm[td + i] = i; }
|
||||
|
||||
a.set_layout(perm);
|
||||
}
|
||||
|
||||
template <typename ndarray_t>
|
||||
inline void set_layout(ndarray_t& a, const std::vector<int>& layout)
|
||||
{
|
||||
if constexpr (ndarray_t::tensor_rank() == 0) { return; }
|
||||
|
||||
constexpr std::size_t nd = ndarray_t::rank();
|
||||
constexpr std::size_t td = ndarray_t::tensor_rank();
|
||||
constexpr std::size_t N = nd + td;
|
||||
|
||||
// missing means default
|
||||
if (layout.empty()) { set_layout_default(a); return; }
|
||||
|
||||
MFEM_VERIFY(layout.size() == N,
|
||||
"layout size mismatch: expected " << N << " got " << layout.size());
|
||||
|
||||
// TODO: make a version of set_layout that takes `std::vector<int>`
|
||||
std::array<std::size_t, N> perm{};
|
||||
for (std::size_t i = 0; i < N; i++)
|
||||
{
|
||||
MFEM_VERIFY(layout[i] >= 0, "layout index must be >=0");
|
||||
perm[i] = static_cast<std::size_t>(layout[i]);
|
||||
}
|
||||
|
||||
a.set_layout(perm);
|
||||
}
|
||||
|
||||
/// Primary template: intentionally undefined — gives a clear error for unsupported types.
|
||||
template <typename T>
|
||||
struct tensor_array_traits;
|
||||
|
||||
/// Matches tensor<scalar_t, sizes...>
|
||||
template <typename scalar_t, int... sizes>
|
||||
struct tensor_array_traits<tensor<scalar_t, sizes...>>
|
||||
{
|
||||
using scalar_type = scalar_t;
|
||||
template <std::size_t ndims>
|
||||
using array_type = tensor_ndarray<scalar_t, ndims, sizes...>;
|
||||
};
|
||||
|
||||
/// Matches tensor_ndarray<scalar_t, ndims, tensor_sizes...>
|
||||
template <typename scalar_t, int ndims, int... tensor_sizes>
|
||||
struct tensor_array_traits<tensor_ndarray<scalar_t, ndims, tensor_sizes...>>
|
||||
{
|
||||
using scalar_type = scalar_t;
|
||||
template <std::size_t N>
|
||||
using array_type = tensor_ndarray<scalar_t, N, tensor_sizes...>;
|
||||
};
|
||||
|
||||
/// Entry point: explicit tensor type T as template argument.
|
||||
template <typename T, typename ptr_scalar_t, typename... dyn_sizes_t>
|
||||
decltype(auto) make_tensor_array(ptr_scalar_t *ptr,
|
||||
const std::vector<int>* layout,
|
||||
dyn_sizes_t... dynamic_sizes)
|
||||
{
|
||||
using traits = tensor_array_traits<T>;
|
||||
using array_t = typename traits::template array_type<sizeof...(dynamic_sizes)>;
|
||||
auto a = array_t(ptr, {std::size_t(dynamic_sizes)...});
|
||||
if (layout) { set_layout(a, *layout); }
|
||||
else { set_layout_default(a); }
|
||||
return a;
|
||||
}
|
||||
|
||||
template <typename qfunc_t, typename inputs_t, typename outputs_t>
|
||||
struct supports_tensor_array_qfunc
|
||||
{
|
||||
using qf_signature = typename get_function_signature<qfunc_t>::type;
|
||||
using qf_param_ts = typename qf_signature::parameter_ts;
|
||||
|
||||
static constexpr int ninputs = tuple_size<inputs_t>::value;
|
||||
static constexpr int noutputs = tuple_size<outputs_t>::value;
|
||||
static constexpr int nparams = tuple_size<qf_param_ts>::value;
|
||||
|
||||
template <std::size_t... Is>
|
||||
static constexpr bool InputsOk(std::index_sequence<Is...>)
|
||||
{
|
||||
return (is_tensor_array<std::remove_cv_t<std::remove_reference_t<
|
||||
typename tuple_element<Is, qf_param_ts>::type>>>::value && ...);
|
||||
}
|
||||
|
||||
template <std::size_t... Is>
|
||||
static constexpr bool OutputsOk(std::index_sequence<Is...>)
|
||||
{
|
||||
return (is_tensor_array_mut<std::remove_cv_t<std::remove_reference_t<
|
||||
typename tuple_element<ninputs + Is, qf_param_ts>::type>>>::value && ...);
|
||||
}
|
||||
|
||||
static constexpr bool value =
|
||||
(nparams == ninputs + noutputs) &&
|
||||
InputsOk(std::make_index_sequence<ninputs> {}) &&
|
||||
OutputsOk(std::make_index_sequence<noutputs> {});
|
||||
};
|
||||
|
||||
template <typename qfunc_t, std::size_t... Is, std::size_t... Os>
|
||||
inline void call_qfunc(
|
||||
const qfunc_t &qfunc,
|
||||
const BlockVector &xq,
|
||||
BlockVector &yq,
|
||||
int gnqp,
|
||||
const std::array<std::vector<int>, sizeof...(Is)>& in_layouts,
|
||||
const std::array<std::vector<int>, sizeof...(Os)>& out_layouts,
|
||||
std::index_sequence<Is...>,
|
||||
std::index_sequence<Os...>)
|
||||
{
|
||||
constexpr std::size_t ninputs = sizeof...(Is);
|
||||
|
||||
using qf_signature = typename get_function_signature<qfunc_t>::type;
|
||||
using qf_param_ts = typename qf_signature::parameter_ts;
|
||||
|
||||
auto inputs = std::make_tuple(
|
||||
make_tensor_array<std::remove_cv_t<std::remove_reference_t<
|
||||
typename tuple_element<Is, qf_param_ts>::type>>>(
|
||||
xq.GetBlock(Is).Read(), &in_layouts[Is], gnqp)...);
|
||||
|
||||
auto outputs = std::make_tuple(
|
||||
make_tensor_array<std::remove_cv_t<std::remove_reference_t<
|
||||
typename tuple_element<ninputs + Os, qf_param_ts>::type>>>(
|
||||
yq.GetBlock(Os).ReadWrite(), &out_layouts[Os], gnqp)...);
|
||||
|
||||
std::apply([&](auto&&... args)
|
||||
{
|
||||
qfunc(args...);
|
||||
}, std::tuple_cat(inputs, outputs));
|
||||
}
|
||||
|
||||
template <typename func_t, typename... arg_ts>
|
||||
MFEM_HOST_DEVICE inline
|
||||
auto qfunction_wrapper(const func_t &f, arg_ts...args)
|
||||
{
|
||||
return f(args...);
|
||||
}
|
||||
|
||||
template <std::size_t derivative_id, std::size_t I, typename Tuple, std::size_t... Is>
|
||||
constexpr std::array<bool, sizeof...(Is)>
|
||||
make_activity_array(std::index_sequence<Is...>)
|
||||
{
|
||||
return { (std::decay_t<typename tuple_element<Is, Tuple>::type>::GetFieldId() == derivative_id)... };
|
||||
}
|
||||
|
||||
template <std::size_t derivative_id, typename inputs_t, std::size_t... Is>
|
||||
constexpr auto make_activity_map_impl(std::index_sequence<Is...>)
|
||||
{
|
||||
constexpr std::size_t N = sizeof...(Is);
|
||||
|
||||
if constexpr (N == 0)
|
||||
return std::array<bool, 0> {};
|
||||
|
||||
return make_activity_array<derivative_id, 0, inputs_t>
|
||||
(std::make_index_sequence<N> {});
|
||||
}
|
||||
|
||||
template <std::size_t derivative_id, typename inputs_t>
|
||||
constexpr auto make_activity_map(inputs_t)
|
||||
{
|
||||
return make_activity_map_impl<derivative_id, inputs_t>(
|
||||
std::make_index_sequence<tuple_size<inputs_t>::value> {});
|
||||
}
|
||||
|
||||
namespace enzyme_detail
|
||||
{
|
||||
|
||||
template <auto wrapper_fn, typename qf_return_t, typename... AccArgs>
|
||||
__attribute__((always_inline)) inline void
|
||||
do_enzyme_call(AccArgs... acc)
|
||||
{
|
||||
__enzyme_fwddiff<qf_return_t>(wrapper_fn, acc...);
|
||||
}
|
||||
|
||||
template <auto wrapper_fn, typename qf_return_t,
|
||||
size_t CurO, size_t NO,
|
||||
typename primals_t, typename derivs_t,
|
||||
typename... AccArgs>
|
||||
__attribute__((always_inline)) inline void
|
||||
process_outputs(primals_t &primals, derivs_t &derivs, AccArgs... acc)
|
||||
{
|
||||
if constexpr (CurO == NO)
|
||||
{
|
||||
do_enzyme_call<wrapper_fn, qf_return_t>(acc...);
|
||||
}
|
||||
else
|
||||
{
|
||||
process_outputs<wrapper_fn, qf_return_t, CurO + 1, NO>(
|
||||
primals, derivs,
|
||||
acc...,
|
||||
enzyme_dupnoneed,
|
||||
&std::get<CurO>(primals),
|
||||
&std::get<CurO>(derivs));
|
||||
}
|
||||
}
|
||||
|
||||
template <auto wrapper_fn, typename qf_return_t,
|
||||
size_t CurI, size_t NI, bool... ActivityMap,
|
||||
typename inputs_t, typename shadows_t,
|
||||
typename primals_t, typename derivs_t,
|
||||
typename... AccArgs>
|
||||
__attribute__((always_inline)) inline void
|
||||
process_inputs(inputs_t &inputs, shadows_t &shadows,
|
||||
primals_t &primals, derivs_t &derivs,
|
||||
AccArgs... acc)
|
||||
{
|
||||
if constexpr (CurI == NI)
|
||||
{
|
||||
constexpr size_t NO = std::tuple_size_v<primals_t>;
|
||||
process_outputs<wrapper_fn, qf_return_t, 0, NO>(
|
||||
primals, derivs, acc...);
|
||||
}
|
||||
else
|
||||
{
|
||||
constexpr bool active =
|
||||
std::array<bool, sizeof...(ActivityMap)> {ActivityMap...} [CurI];
|
||||
|
||||
if constexpr (active)
|
||||
{
|
||||
std::cout << "Input[" << CurI << "]: ACTIVE (enzyme_dup)\n"
|
||||
<< " primal ptr type: "
|
||||
<< get_type_name<decltype(&std::get<CurI>(inputs))>() << "\n"
|
||||
<< " shadow ptr type: "
|
||||
<< get_type_name<decltype(&std::get<CurI>(shadows))>() << "\n";
|
||||
}
|
||||
else
|
||||
{
|
||||
std::cout << "Input[" << CurI << "]: INACTIVE (enzyme_const)\n"
|
||||
<< " primal ptr type: "
|
||||
<< get_type_name<decltype(&std::get<CurI>(inputs))>() << "\n";
|
||||
}
|
||||
|
||||
if constexpr (active)
|
||||
{
|
||||
process_inputs<wrapper_fn, qf_return_t, CurI + 1, NI, ActivityMap...>(
|
||||
inputs, shadows, primals, derivs,
|
||||
acc...,
|
||||
enzyme_dup,
|
||||
&std::get<CurI>(inputs),
|
||||
&std::get<CurI>(shadows));
|
||||
}
|
||||
else
|
||||
{
|
||||
process_inputs<wrapper_fn, qf_return_t, CurI + 1, NI, ActivityMap...>(
|
||||
inputs, shadows, primals, derivs,
|
||||
acc...,
|
||||
enzyme_const,
|
||||
&std::get<CurI>(inputs));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace enzyme_detail
|
||||
|
||||
template <size_t derivative_id, typename qfunc_t, typename inputs_t, typename outputs_t,
|
||||
std::size_t... Is, std::size_t... Os>
|
||||
inline void enzyme_fwddiff(
|
||||
qfunc_t &qfunc,
|
||||
const BlockVector &xq,
|
||||
const BlockVector &shadow_xq,
|
||||
BlockVector &yq,
|
||||
const int &gnqp,
|
||||
const std::array<std::vector<int>, sizeof...(Is)>& in_layouts,
|
||||
const std::array<std::vector<int>, sizeof...(Os)>& out_layouts,
|
||||
std::index_sequence<Is...>,
|
||||
std::index_sequence<Os...>)
|
||||
{
|
||||
#ifdef MFEM_USE_ENZYME
|
||||
constexpr std::size_t ninputs = sizeof...(Is);
|
||||
constexpr std::size_t noutputs = sizeof...(Os);
|
||||
|
||||
using qf_signature = typename get_function_signature<qfunc_t>::type;
|
||||
using qf_param_ts = typename qf_signature::parameter_ts;
|
||||
using qf_return_t = typename qf_signature::return_t;
|
||||
|
||||
constexpr auto activity_map = make_activity_map<derivative_id>(inputs_t{});
|
||||
static_assert(activity_map.size() == ninputs, "activity map size mismatch");
|
||||
|
||||
std::cout << "activity_map: ";
|
||||
for (const auto &v : activity_map)
|
||||
{
|
||||
std::cout << v << " ";
|
||||
}
|
||||
std::cout << "\n";
|
||||
|
||||
auto inputs = std::make_tuple(
|
||||
make_tensor_array<std::remove_cv_t<std::remove_reference_t<
|
||||
typename tuple_element<Is, qf_param_ts>::type>>>(
|
||||
xq.GetBlock(Is).Read(), &in_layouts[Is], gnqp)...);
|
||||
|
||||
auto shadows = std::make_tuple(
|
||||
make_tensor_array<std::remove_cv_t<std::remove_reference_t<
|
||||
typename tuple_element<Is, qf_param_ts>::type>>>(
|
||||
shadow_xq.GetBlock(Is).Read(), &in_layouts[Is], gnqp)...);
|
||||
|
||||
std::array<Vector, noutputs> primal_storage;
|
||||
((primal_storage[Os].SetSize(yq.GetBlock(Os).Size())), ...);
|
||||
|
||||
auto primals_out = std::make_tuple(
|
||||
make_tensor_array<std::remove_cv_t<std::remove_reference_t<
|
||||
typename tuple_element<ninputs + Os, qf_param_ts>::type>>>(
|
||||
primal_storage[Os].ReadWrite(), &out_layouts[Os], gnqp)...);
|
||||
|
||||
auto derivs_out = std::make_tuple(
|
||||
make_tensor_array<std::remove_cv_t<std::remove_reference_t<
|
||||
typename tuple_element<ninputs + Os, qf_param_ts>::type>>>(
|
||||
yq.GetBlock(Os).ReadWrite(), &out_layouts[Os], gnqp)...);
|
||||
|
||||
using wrapper_fn_t = qf_return_t (*)(
|
||||
const qfunc_t &,
|
||||
std::remove_reference_t<decltype(std::get<Is>(inputs))>...,
|
||||
std::remove_reference_t<decltype(std::get<Os>(primals_out))>...);
|
||||
|
||||
constexpr wrapper_fn_t wrapper_fn =
|
||||
qfunction_wrapper<qfunc_t,
|
||||
std::remove_reference_t<decltype(std::get<Is>(inputs))>...,
|
||||
std::remove_reference_t<decltype(std::get<Os>(primals_out))>...>;
|
||||
|
||||
// wrapper_fn travels as a non-type template parameter throughout without
|
||||
// being stored.
|
||||
enzyme_detail::process_inputs<
|
||||
wrapper_fn,
|
||||
qf_return_t,
|
||||
0,
|
||||
ninputs,
|
||||
activity_map[Is]...
|
||||
>(inputs, shadows,
|
||||
primals_out, derivs_out,
|
||||
enzyme_const, &qfunc // seed: qfunc is always inactive
|
||||
);
|
||||
|
||||
#else
|
||||
MFEM_ABORT("enzyme_fwddiff requires MFEM_USE_ENZYME");
|
||||
#endif
|
||||
}
|
||||
|
||||
} // namespace detail
|
||||
|
||||
// Create quadrature function fop to fields map
|
||||
template <typename fops_t, size_t N = tuple_size<fops_t>::value, size_t M>
|
||||
void create_fop_to_fd(const fops_t &fops,
|
||||
const std::vector<FieldDescriptor> &fields,
|
||||
std::array<size_t, M> &fop_to_fd)
|
||||
{
|
||||
static_assert(N == M, "sizes must match");
|
||||
constexpr_for<0, N>([&](auto i)
|
||||
{
|
||||
const auto fop = get<i>(fops);
|
||||
fop_to_fd[i] = std::numeric_limits<size_t>::max();
|
||||
for (size_t j = 0; j < fields.size(); j++)
|
||||
{
|
||||
// TODO: output.GetFieldId() should probably store/return size_t
|
||||
if (static_cast<int>(fields[j].id) == fop.GetFieldId())
|
||||
{
|
||||
fop_to_fd[i] = j;
|
||||
}
|
||||
}
|
||||
// Handle Weight type. There is no FieldDescriptor for the weight.
|
||||
// TODO: Create weight descriptor for the weight for internal use?
|
||||
// TODO: this is a hack...
|
||||
if (is_weight_fop<std::remove_cv_t<decltype(fop)>>::value)
|
||||
{
|
||||
fop_to_fd[i] = 0;
|
||||
}
|
||||
else if (fop_to_fd[i] == std::numeric_limits<size_t>::max())
|
||||
{
|
||||
MFEM_ABORT("not found");
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template <typename fops_t, size_t nfops>
|
||||
void create_qlayouts(const fops_t &fops,
|
||||
const std::unordered_map<std::type_index, std::vector<int>> &a,
|
||||
std::array<std::vector<int>, nfops> &b)
|
||||
{
|
||||
constexpr_for<0, nfops>([&](auto i)
|
||||
{
|
||||
using fop_t =
|
||||
std::remove_cv_t<std::remove_reference_t<decltype(get<i>(fops))>>;
|
||||
auto it = a.find(std::type_index(typeid(fop_t)));
|
||||
if (it != a.end()) { b[i] = it->second; }
|
||||
else { b[i].clear(); }
|
||||
});
|
||||
}
|
||||
|
||||
}
|
||||
+96
-21
@@ -11,44 +11,119 @@
|
||||
|
||||
#include "doperator.hpp"
|
||||
|
||||
#include <algorithm>
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
|
||||
using namespace mfem;
|
||||
using namespace mfem::future;
|
||||
|
||||
void DifferentiableOperator::SetParameters(std::vector<Vector *> p) const
|
||||
DifferentiableOperator::DifferentiableOperator(
|
||||
const std::vector<FieldDescriptor> &infds,
|
||||
const std::vector<FieldDescriptor> &outfds,
|
||||
const ParMesh &mesh) :
|
||||
Operator(),
|
||||
mesh(mesh),
|
||||
infds(infds),
|
||||
outfds(outfds)
|
||||
{
|
||||
MFEM_ASSERT(parameters.size() == p.size(),
|
||||
"number of parameters doesn't match descriptors");
|
||||
for (size_t i = 0; i < parameters.size(); i++)
|
||||
unionfds.clear();
|
||||
unionfds.insert(unionfds.end(), infds.begin(), infds.end());
|
||||
unionfds.insert(unionfds.end(), outfds.begin(), outfds.end());
|
||||
std::sort(unionfds.begin(), unionfds.end());
|
||||
auto last = std::unique(unionfds.begin(), unionfds.end());
|
||||
unionfds.erase(last, unionfds.end());
|
||||
|
||||
infields_l.resize(infds.size());
|
||||
for (size_t i = 0; i < infds.size(); i++)
|
||||
{
|
||||
p[i]->Read();
|
||||
parameters_l[i] = *p[i];
|
||||
infields_l[i] = new Vector(GetVSize(infds[i]));
|
||||
}
|
||||
|
||||
infields_e.resize(infds.size());
|
||||
}
|
||||
|
||||
DifferentiableOperator::DifferentiableOperator(
|
||||
const std::vector<FieldDescriptor> &solutions,
|
||||
const std::vector<FieldDescriptor> ¶meters,
|
||||
const ParMesh &mesh) :
|
||||
mesh(mesh),
|
||||
solutions(solutions),
|
||||
parameters(parameters)
|
||||
void DifferentiableOperator::SetMultLevel(MultLevel level)
|
||||
{
|
||||
fields.resize(solutions.size() + parameters.size());
|
||||
fields_e.resize(fields.size());
|
||||
solutions_l.resize(solutions.size());
|
||||
parameters_l.resize(parameters.size());
|
||||
mult_level = level;
|
||||
}
|
||||
|
||||
for (size_t i = 0; i < solutions.size(); i++)
|
||||
void DifferentiableOperator::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_ASSERT(!action_callbacks.empty(),
|
||||
"no integrators have been set");
|
||||
|
||||
MFEM_ASSERT(dynamic_cast<const BlockVector*>(&x),
|
||||
"x needs to be a BlockVector");
|
||||
|
||||
MFEM_ASSERT(dynamic_cast<const BlockVector*>(&y),
|
||||
"y needs to be a BlockVector");
|
||||
|
||||
const auto &bx = static_cast<const BlockVector &>(x);
|
||||
auto &by = static_cast<BlockVector &>(y);
|
||||
|
||||
Mult(bx, by);
|
||||
}
|
||||
|
||||
void DifferentiableOperator::DisableTensorProductStructure(bool disable)
|
||||
{
|
||||
use_tensor_product_structure = !disable;
|
||||
}
|
||||
|
||||
std::shared_ptr<DerivativeOperator> DifferentiableOperator::GetDerivative(
|
||||
size_t derivative_id, const Vector &x)
|
||||
{
|
||||
MFEM_ASSERT(derivative_action_callbacks.find(derivative_id) !=
|
||||
derivative_action_callbacks.end(),
|
||||
"no derivative action has been found for ID " << derivative_id);
|
||||
|
||||
const size_t dfidx = FindIdx(derivative_id, infds);
|
||||
|
||||
// Get transpose callbacks if available, otherwise pass empty vector
|
||||
std::vector<derivative_action_t> transpose_callbacks;
|
||||
auto it = daction_transpose_callbacks.find(derivative_id);
|
||||
if (it != daction_transpose_callbacks.end())
|
||||
{
|
||||
fields[i] = solutions[i];
|
||||
transpose_callbacks = it->second;
|
||||
}
|
||||
|
||||
for (size_t i = 0; i < parameters.size(); i++)
|
||||
return std::make_shared<DerivativeOperator>(
|
||||
height,
|
||||
GetTrueVSize(infds[dfidx]),
|
||||
derivative_action_callbacks[derivative_id],
|
||||
transpose_callbacks,
|
||||
infds[dfidx],
|
||||
x,
|
||||
infds,
|
||||
outfds);
|
||||
}
|
||||
|
||||
std::shared_ptr<DerivativeOperator> DifferentiableOperator::GetDerivative(
|
||||
size_t derivative_id, const MultiVector &x)
|
||||
{
|
||||
MFEM_ASSERT(derivative_action_callbacks.find(derivative_id) !=
|
||||
derivative_action_callbacks.end(),
|
||||
"no derivative action has been found for ID " << derivative_id);
|
||||
|
||||
const size_t dfidx = FindIdx(derivative_id, infds);
|
||||
|
||||
// Get transpose callbacks if available, otherwise pass empty vector
|
||||
std::vector<derivative_action_t> transpose_callbacks;
|
||||
auto it = daction_transpose_callbacks.find(derivative_id);
|
||||
if (it != daction_transpose_callbacks.end())
|
||||
{
|
||||
fields[i + solutions.size()] = parameters[i];
|
||||
transpose_callbacks = it->second;
|
||||
}
|
||||
|
||||
return std::make_shared<DerivativeOperator>(
|
||||
height,
|
||||
GetTrueVSize(infds[dfidx]),
|
||||
derivative_action_callbacks[derivative_id],
|
||||
transpose_callbacks,
|
||||
infds[dfidx],
|
||||
x,
|
||||
infds,
|
||||
outfds);
|
||||
}
|
||||
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
+220
-897
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,63 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
#pragma once
|
||||
|
||||
#include "../fespace.hpp"
|
||||
#include "parameterspace.hpp"
|
||||
|
||||
namespace mfem::future
|
||||
{
|
||||
|
||||
/// @brief FieldDescriptor struct
|
||||
///
|
||||
/// This struct is used to store information about a field.
|
||||
struct FieldDescriptor
|
||||
{
|
||||
using data_variant_t =
|
||||
std::variant<const FiniteElementSpace *,
|
||||
const ParFiniteElementSpace *,
|
||||
const QuadratureFunction *,
|
||||
const ParameterSpace *>;
|
||||
|
||||
/// Field ID
|
||||
std::size_t id;
|
||||
|
||||
/// Field variant
|
||||
data_variant_t data;
|
||||
|
||||
/// Default constructor
|
||||
FieldDescriptor() :
|
||||
id(SIZE_MAX), data(data_variant_t{}) {}
|
||||
|
||||
/// Constructor
|
||||
template <typename T>
|
||||
FieldDescriptor(std::size_t field_id, const T* v) :
|
||||
id(field_id), data(v) {}
|
||||
|
||||
bool operator==(const FieldDescriptor& other) const
|
||||
{
|
||||
return id == other.id;
|
||||
}
|
||||
|
||||
bool operator<(const FieldDescriptor& other) const
|
||||
{
|
||||
return id < other.id;
|
||||
}
|
||||
|
||||
friend void swap(FieldDescriptor& a, FieldDescriptor& b)
|
||||
{
|
||||
using std::swap;
|
||||
swap(a.id, b.id);
|
||||
swap(a.data, b.data);
|
||||
}
|
||||
};
|
||||
|
||||
}
|
||||
+11
-8
@@ -90,8 +90,8 @@ void map_quadrature_data_to_fields_impl(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor");
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
" for this field descriptor");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -169,8 +169,9 @@ void map_quadrature_data_to_fields_tensor_impl_1d(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor with sum factorization on tensor product elements");
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
"for this field descriptor with sum factorization on"
|
||||
" tensor product elements");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -306,8 +307,9 @@ void map_quadrature_data_to_fields_tensor_impl_2d(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor with sum factorization on tensor product elements");
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
" for this field descriptor with sum factorization on"
|
||||
" tensor product elements");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -492,8 +494,9 @@ void map_quadrature_data_to_fields_tensor_impl_3d(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor with sum factorization on tensor product elements");
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
" for this field descriptor with sum factorization on"
|
||||
" tensor product elements");
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -0,0 +1,22 @@
|
||||
#pragma once
|
||||
|
||||
#include "util.hpp"
|
||||
|
||||
namespace mfem::future
|
||||
{
|
||||
|
||||
struct IntegratorContext
|
||||
{
|
||||
const ParMesh &mesh;
|
||||
const Array<int> *elem_attr;
|
||||
Array<int> attr;
|
||||
int nentities;
|
||||
const std::vector<FieldDescriptor> &infds;
|
||||
const std::vector<FieldDescriptor> &outfds;
|
||||
const std::vector<FieldDescriptor> &unionfds;
|
||||
const IntegrationRule &ir;
|
||||
std::unordered_map<std::type_index, std::vector<int>> &in_qlayouts;
|
||||
std::unordered_map<std::type_index, std::vector<int>> &out_qlayouts;
|
||||
};
|
||||
|
||||
}
|
||||
@@ -43,7 +43,7 @@ public:
|
||||
/// Get spatial dimension
|
||||
///
|
||||
/// returns always 1.
|
||||
int Dimension() const
|
||||
constexpr int Dimension() const
|
||||
{
|
||||
return 1;
|
||||
}
|
||||
@@ -74,11 +74,14 @@ public:
|
||||
return elem_restr.get();
|
||||
}
|
||||
|
||||
virtual const Operator* GetB() const = 0;
|
||||
|
||||
virtual const Operator* GetBt() const = 0;
|
||||
|
||||
protected:
|
||||
int vdim;
|
||||
DofToQuad dtq;
|
||||
mutable std::unique_ptr<Operator> prolongation;
|
||||
mutable std::unique_ptr<Operator> elem_restr;
|
||||
mutable std::unique_ptr<Operator> prolongation, elem_restr, B, Bt;
|
||||
};
|
||||
|
||||
/// @brief Uniform parameter space
|
||||
|
||||
@@ -0,0 +1,49 @@
|
||||
export LC_USER=andrej1
|
||||
module load rocmcc/6.3.1-cce-19.0.0-magic cmake/3.29.2
|
||||
|
||||
export MPICH_CC=amdclang
|
||||
export MPICH_CXX=amdclang++
|
||||
export ROCM_PATH=/opt/rocm-6.3.1
|
||||
export LLVM_DIR=$ROCM_PATH/lib/llvm
|
||||
export MPI_DIR=/usr/tce/packages/cray-mpich/cray-mpich-8.1.32-rocmcc-6.3.1-cce-19.0.0-magic
|
||||
|
||||
export CMAKE_PREFIX_PATH=$CMAKE_PREFIX_PATH:$ROCM_PATH/lib/cmake/hip:$ROCM_PATH/lib/cmake/hipblas:$ROCM_PATH/lib/cmake/hipblas-common:$ROCM_PATH/lib/cmake/hipsparse:$ROCM_PATH/lib/cmake/rocsparse:$ROCM_PATH/lib/cmake/rocrand
|
||||
|
||||
export BASE_DIR=/usr/workspace/$LC_USER/dfem-tuo-magic
|
||||
export LOCAL_DIR=/usr/workspace/$LC_USER/dfem-tuo-magic/local
|
||||
mkdir -p $LOCAL_DIR
|
||||
export PATH=$LOCAL_DIR/bin:$PATH
|
||||
cd $BASE_DIR
|
||||
|
||||
## Enzyme
|
||||
git clone --depth 1 https://github.com/EnzymeAD/Enzyme.git
|
||||
pushd Enzyme/enzyme
|
||||
CC=amdclang CXX=amdclang++ cmake -B build -DLLVM_DIR=$LLVM_DIR -DCMAKE_INSTALL_PREFIX=$LOCAL_DIR
|
||||
cmake --build build -j && cmake --install build
|
||||
popd
|
||||
|
||||
## hypre
|
||||
curl https://github.com/hypre-space/hypre/archive/refs/tags/v2.32.0.tar.gz -o hypre-v2.32.0.tar.gz -L
|
||||
tar xzf hypre-v2.32.0.tar.gz
|
||||
pushd hypre-2.32.0/src
|
||||
CC=mpicc CXX=mpicxx CXXFLAGS="std=c++17 -fPIC" CFLAGS="-fPIC" ROCM_PATH=$ROCM_PATH ./configure --disable-fortran --prefix=$LOCAL_DIR --with-MPI-libs="mpi mpich" --with-MPI-lib-dirs=$MPI_DIR/lib --with-MPI-include=$MPI_DIR/include --enable-shared --with-hip
|
||||
make -j install
|
||||
popd
|
||||
|
||||
## metis
|
||||
curl -OL https://github.com/mfem/tpls/raw/gh-pages/parmetis-4.0.3.tar.gz
|
||||
tar xzf parmetis-4.0.3.tar.gz
|
||||
pushd parmetis-4.0.3
|
||||
cmake -B build -DCMAKE_CXX_FLAGS="-fPIC" -DCMAKE_C_FLAGS="-fPIC" -DGKLIB_PATH=$BASE_DIR/parmetis-4.0.3/metis/GKlib -DMETIS_PATH=$BASE_DIR/parmetis-4.0.3/metis -DCMAKE_INSTALL_PREFIX=$LOCAL_DIR -DSHARED=1 -DCMAKE_C_COMPILER=mpicc -DCMAKE_CXX_COMPILER=mpicxx
|
||||
cmake --build build -j && cmake --install build
|
||||
popd
|
||||
pushd parmetis-4.0.3/metis
|
||||
cmake -B build -DCMAKE_CXX_FLAGS="-fPIC" -DCMAKE_C_FLAGS="-fPIC" -DGKLIB_PATH=$BASE_DIR/parmetis-4.0.3/metis/GKlib -DCMAKE_INSTALL_PREFIX=$LOCAL_DIR -DSHARED=1 -DCMAKE_C_COMPILER=mpicc -DCMAKE_CXX_COMPILER=mpicxx
|
||||
cmake --build build -j && cmake --install build
|
||||
popd
|
||||
|
||||
git clone https://github.com/mfem/mfem.git
|
||||
git switch dfem-phase1-dev
|
||||
pushd mfem
|
||||
CXX=mpicxx cmake -B build-opt -DCMAKE_BUILD_TYPE=Release -DMFEM_USE_HIP=ON -DCMAKE_HIP_ARCHITECTURES="gfx942" -DCMAKE_HIP_PLATFORM="amd"
|
||||
cmake --build build-opt -j
|
||||
@@ -0,0 +1,31 @@
|
||||
if (NOT CMAKE_BUILD_TYPE)
|
||||
set(CMAKE_BUILD_TYPE "Release" CACHE STRING
|
||||
"Build type: Debug, Release, RelWithDebInfo, or MinSizeRel." FORCE)
|
||||
endif()
|
||||
|
||||
set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
|
||||
set(CMAKE_CXX_STANDARD 17)
|
||||
# set(CMAKE_CXX_FLAGS "--save-temps -Rpass-analysis=kernel-resource-usage -mllvm -amdgpu-early-inline-all=true -mllvm -amdgpu-function-calls=false")
|
||||
|
||||
set(MFEM_PRECISION "double" CACHE STRING
|
||||
"Floating-point precision to use: single, or double")
|
||||
|
||||
option(BUILD_SHARED_LIBS "Enable shared library build of MFEM" ON)
|
||||
option(MFEM_USE_MPI "Enable MPI parallel build" ON)
|
||||
option(MFEM_USE_METIS "Enable METIS usage" ${MFEM_USE_MPI})
|
||||
option(MFEM_USE_ENZYME "Enable Enzyme" ON)
|
||||
option(MFEM_USE_HIP "Enable HIP" ON)
|
||||
|
||||
set(MFEM_MPI_NP 4 CACHE STRING "Number of processes used for MPI tests")
|
||||
|
||||
option(MFEM_ENABLE_TESTING ON)
|
||||
|
||||
set(HIP_ARCH "gfx942" CACHE STRING "Target HIP architecture.")
|
||||
|
||||
# Make sure all dirs are absolute
|
||||
set(ENZYME_DIR "/usr/workspace/andrej1/dfem-tuo-magic/local/cmake/Enzyme" CACHE PATH "Path to the Enzyme library.")
|
||||
set(HYPRE_DIR "/usr/workspace/andrej1/dfem-tuo-magic/local" CACHE PATH "Path to the hypre library.")
|
||||
set(METIS_DIR "/usr/workspace/andrej1/dfem-tuo-magic/local" CACHE PATH "Path to the METIS library.")
|
||||
|
||||
set(CMAKE_SKIP_PREPROCESSED_SOURCE_RULES ON) # Skip *.i rules
|
||||
set(CMAKE_SKIP_ASSEMBLY_SOURCE_RULES ON) # Skip *.s rules
|
||||
+375
-37
@@ -21,6 +21,7 @@
|
||||
#include <type_traits>
|
||||
#include <numeric>
|
||||
#include <iomanip>
|
||||
#include <typeindex>
|
||||
|
||||
#include "../../general/communication.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
@@ -28,9 +29,12 @@
|
||||
#include "../fe/fe_base.hpp"
|
||||
#include "../fespace.hpp"
|
||||
#include "../pfespace.hpp"
|
||||
#include "../qfunction.hpp"
|
||||
#include "../../mesh/mesh.hpp"
|
||||
#include "../../linalg/dtensor.hpp"
|
||||
#include "../quadinterpolator.hpp"
|
||||
|
||||
#include "fielddescriptor.hpp"
|
||||
#include "fieldoperator.hpp"
|
||||
#include "parameterspace.hpp"
|
||||
#include "tuple.hpp"
|
||||
@@ -108,6 +112,16 @@ constexpr void for_constexpr_with_arg(lambda&& f, arg_t&& arg)
|
||||
indices{});
|
||||
}
|
||||
|
||||
template <auto start, auto end, auto inc = 1, typename F>
|
||||
constexpr void constexpr_for(F&& f)
|
||||
{
|
||||
if constexpr (start < end)
|
||||
{
|
||||
f(std::integral_constant<decltype(start), start>());
|
||||
constexpr_for<start + inc, end, inc>(f);
|
||||
}
|
||||
}
|
||||
|
||||
template <std::size_t I, typename Tuple, std::size_t... Is>
|
||||
std::array<bool, sizeof...(Is)>
|
||||
make_dependency_array(const Tuple& inputs, std::index_sequence<Is...>)
|
||||
@@ -444,6 +458,21 @@ struct create_function_signature<output_t (*)(input_ts...)>
|
||||
using type = FunctionSignature<output_t(input_ts...)>;
|
||||
};
|
||||
|
||||
template <typename...>
|
||||
using void_t = void;
|
||||
|
||||
template <typename T, typename = void>
|
||||
struct get_function_signature
|
||||
{
|
||||
using type = typename create_function_signature<T>::type;
|
||||
};
|
||||
|
||||
template <typename T>
|
||||
struct get_function_signature<T, void_t<decltype(&T::operator())>>
|
||||
{
|
||||
using type = typename create_function_signature<decltype(&T::operator())>::type;
|
||||
};
|
||||
|
||||
template <typename T>
|
||||
constexpr int GetFieldId()
|
||||
{
|
||||
@@ -544,32 +573,6 @@ constexpr auto filter_fields(const std::tuple<Ts...>& t)
|
||||
std::conditional_t<Ts::GetFieldId() != -1, std::tuple<Ts>, std::tuple<>> {}...);
|
||||
}
|
||||
|
||||
/// @brief FieldDescriptor struct
|
||||
///
|
||||
/// This struct is used to store information about a field.
|
||||
struct FieldDescriptor
|
||||
{
|
||||
using data_variant_t =
|
||||
std::variant<const FiniteElementSpace *,
|
||||
const ParFiniteElementSpace *,
|
||||
const ParameterSpace *>;
|
||||
|
||||
/// Field ID
|
||||
std::size_t id;
|
||||
|
||||
/// Field variant
|
||||
data_variant_t data;
|
||||
|
||||
/// Default constructor
|
||||
FieldDescriptor() :
|
||||
id(SIZE_MAX), data(data_variant_t{}) {}
|
||||
|
||||
/// Constructor
|
||||
template <typename T>
|
||||
FieldDescriptor(std::size_t field_id, const T* v) :
|
||||
id(field_id), data(v) {}
|
||||
};
|
||||
|
||||
namespace dfem
|
||||
{
|
||||
template <class... T> constexpr bool always_false = false;
|
||||
@@ -772,6 +775,10 @@ int GetVSize(const FieldDescriptor &f)
|
||||
{
|
||||
return arg->GetVSize();
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const QuadratureFunction *>)
|
||||
{
|
||||
return arg->Size();
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const ParameterSpace *>)
|
||||
{
|
||||
return arg->GetVSize();
|
||||
@@ -810,6 +817,10 @@ void GetElementVDofs(const FieldDescriptor &f, int el, Array<int> &vdofs)
|
||||
{
|
||||
arg->GetElementVDofs(el, vdofs);
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const QuadratureFunction *>)
|
||||
{
|
||||
MFEM_ABORT("internal error");
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const ParameterSpace *>)
|
||||
{
|
||||
MFEM_ABORT("internal error");
|
||||
@@ -844,6 +855,10 @@ int GetTrueVSize(const FieldDescriptor &f)
|
||||
{
|
||||
return arg->GetTrueVSize();
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const QuadratureFunction *>)
|
||||
{
|
||||
return arg->Size();
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const ParameterSpace *>)
|
||||
{
|
||||
return arg->GetTrueVSize();
|
||||
@@ -874,6 +889,10 @@ int GetVDim(const FieldDescriptor &f)
|
||||
{
|
||||
return arg->GetVDim();
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const QuadratureFunction *>)
|
||||
{
|
||||
return arg->GetVDim();
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const ParameterSpace *>)
|
||||
{
|
||||
return arg->GetVDim();
|
||||
@@ -909,6 +928,10 @@ int GetDimension(const FieldDescriptor &f)
|
||||
return arg->GetMesh()->Dimension() - 1;
|
||||
}
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const QuadratureFunction *>)
|
||||
{
|
||||
return arg->GetSpace()->GetMesh()->Dimension();
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const ParameterSpace *>)
|
||||
{
|
||||
return arg->Dimension();
|
||||
@@ -921,6 +944,36 @@ int GetDimension(const FieldDescriptor &f)
|
||||
}, f.data);
|
||||
}
|
||||
|
||||
inline
|
||||
std::variant<const QuadratureInterpolator *, const Operator *>get_qinterp(
|
||||
const FieldDescriptor &f,
|
||||
const IntegrationRule &ir)
|
||||
{
|
||||
return std::visit([&ir](auto && arg) -> const QuadratureInterpolator*
|
||||
{
|
||||
using T = std::decay_t<decltype(arg)>;
|
||||
if constexpr (std::is_same_v<T, const FiniteElementSpace *> ||
|
||||
std::is_same_v<T, const ParFiniteElementSpace *>)
|
||||
{
|
||||
return arg->GetQuadratureInterpolator(ir);
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const QuadratureFunction *>)
|
||||
{
|
||||
// QuadratureFunction doesn't need a QuadratureInterpolator
|
||||
return nullptr;
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const ParameterSpace *>)
|
||||
{
|
||||
return nullptr;
|
||||
}
|
||||
else
|
||||
{
|
||||
static_assert(dfem::always_false<T>, "internal error");
|
||||
}
|
||||
|
||||
return nullptr; // Unreachable, but avoids compiler warning
|
||||
}, f.data);
|
||||
}
|
||||
|
||||
/// @brief Get the prolongation operator for a field descriptor.
|
||||
///
|
||||
@@ -937,6 +990,10 @@ const Operator *get_prolongation(const FieldDescriptor &f)
|
||||
{
|
||||
return arg->GetProlongationMatrix();
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const QuadratureFunction *>)
|
||||
{
|
||||
return nullptr;
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const ParameterSpace *>)
|
||||
{
|
||||
return arg->GetProlongationMatrix();
|
||||
@@ -967,6 +1024,10 @@ const Operator *get_element_restriction(const FieldDescriptor &f,
|
||||
{
|
||||
return arg->GetElementRestriction(o);
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const QuadratureFunction *>)
|
||||
{
|
||||
return nullptr;
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const ParameterSpace *>)
|
||||
{
|
||||
return arg->GetElementRestriction(o);
|
||||
@@ -1002,6 +1063,11 @@ const Operator *get_face_restriction(const FieldDescriptor &f,
|
||||
{
|
||||
return arg->GetFaceRestriction(o, ft, m);
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const QuadratureFunction *>)
|
||||
{
|
||||
// QuadratureFunction does not support face restrictions
|
||||
MFEM_ABORT("internal error");
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const ParameterSpace *>)
|
||||
{
|
||||
// ParameterSpace does not support face restrictions
|
||||
@@ -1091,6 +1157,15 @@ void prolongation(const FieldDescriptor field, const Vector &x, Vector &field_l)
|
||||
P->Mult(x, field_l);
|
||||
}
|
||||
|
||||
inline
|
||||
void prolongation_transpose(
|
||||
const FieldDescriptor &field, const Vector &field_l, Vector &x)
|
||||
{
|
||||
const auto P = get_prolongation(field);
|
||||
x.SetSize(P->Width());
|
||||
P->MultTranspose(field_l, x);
|
||||
}
|
||||
|
||||
/// @brief Apply the prolongation operator to a vector of fields.
|
||||
///
|
||||
/// x is a long vector containing the data for all fields on tdofs and
|
||||
@@ -1130,20 +1205,259 @@ void prolongation(const std::array<FieldDescriptor, N> fields,
|
||||
/// @param fields the array of field descriptors.
|
||||
/// @param x the input vector in tdofs.
|
||||
/// @param fields_l the array of output vectors in vdofs.
|
||||
// inline
|
||||
// void prolongation(const std::vector<FieldDescriptor> fields,
|
||||
// const Vector &x,
|
||||
// std::vector<Vector> &fields_l)
|
||||
// {
|
||||
// int data_offset = 0;
|
||||
// for (std::size_t i = 0; i < fields.size(); i++)
|
||||
// {
|
||||
// const auto P = get_prolongation(fields[i]);
|
||||
// const int width = P->Width();
|
||||
// const Vector x_i(const_cast<Vector&>(x), data_offset, width);
|
||||
// fields_l[i].SetSize(P->Height());
|
||||
// P->Mult(x_i, fields_l[i]);
|
||||
// data_offset += width;
|
||||
// }
|
||||
// }
|
||||
|
||||
inline
|
||||
void prolongation(const std::vector<FieldDescriptor> fields,
|
||||
const Vector &x,
|
||||
std::vector<Vector> &fields_l)
|
||||
void prolongation(
|
||||
const std::vector<FieldDescriptor> fields,
|
||||
const BlockVector &x,
|
||||
std::vector<Vector *> &x_l)
|
||||
{
|
||||
int data_offset = 0;
|
||||
for (std::size_t i = 0; i < fields.size(); i++)
|
||||
MFEM_ASSERT(x.NumBlocks() == static_cast<int>(x_l.size()),
|
||||
"error " << x.NumBlocks() << " vs " << x_l.size());
|
||||
for (int i = 0; i < x.NumBlocks(); i++)
|
||||
{
|
||||
const auto P = get_prolongation(fields[i]);
|
||||
const int width = P->Width();
|
||||
const Vector x_i(const_cast<Vector&>(x), data_offset, width);
|
||||
fields_l[i].SetSize(P->Height());
|
||||
P->Mult(x_i, fields_l[i]);
|
||||
data_offset += width;
|
||||
|
||||
// If nullptr, assume Identity.
|
||||
if (P == nullptr)
|
||||
{
|
||||
*x_l[i] = x.GetBlock(i);
|
||||
}
|
||||
else
|
||||
{
|
||||
const auto P = get_prolongation(fields[i]);
|
||||
MFEM_ASSERT(P->Width() == x.GetBlock(i).Size(),
|
||||
"prolongation not applicable to given input data size " <<
|
||||
P->Width() << " vs " << x.GetBlock(i).Size());
|
||||
MFEM_ASSERT(P->Height() == x_l[i]->Size(),
|
||||
"prolongation not applicable to given output data size " <<
|
||||
P->Height() << " vs " << x_l[i]->Size());
|
||||
P->Mult(x.GetBlock(i), *x_l[i]);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
inline
|
||||
void prolongation(
|
||||
const std::vector<FieldDescriptor> fields,
|
||||
const MultiVector &x,
|
||||
std::vector<Vector *> &x_l)
|
||||
{
|
||||
MFEM_ASSERT(x.NumBlocks() == static_cast<int>(x_l.size()),
|
||||
"error " << x.NumBlocks() << " vs " << x_l.size());
|
||||
for (int i = 0; i < x.NumBlocks(); i++)
|
||||
{
|
||||
const auto P = get_prolongation(fields[i]);
|
||||
|
||||
// If nullptr, assume Identity.
|
||||
if (P == nullptr)
|
||||
{
|
||||
*x_l[i] = x[i];
|
||||
}
|
||||
else
|
||||
{
|
||||
const auto P = get_prolongation(fields[i]);
|
||||
MFEM_ASSERT(P->Width() == x[i].Size(),
|
||||
"prolongation not applicable to given input data size " <<
|
||||
P->Width() << " vs " << x[i].Size());
|
||||
MFEM_ASSERT(P->Height() == x_l[i]->Size(),
|
||||
"prolongation not applicable to given output data size " <<
|
||||
P->Height() << " vs " << x_l[i]->Size());
|
||||
P->Mult(x[i], *x_l[i]);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
inline
|
||||
void prolongation_transpose(
|
||||
const std::vector<FieldDescriptor> fields,
|
||||
const std::vector<Vector *> &x_l,
|
||||
BlockVector &x)
|
||||
{
|
||||
MFEM_ASSERT(static_cast<int>(x_l.size()) == x.NumBlocks(),
|
||||
"error " << x_l.size() << " vs " << x.NumBlocks());
|
||||
for (size_t i = 0; i < x_l.size(); i++)
|
||||
{
|
||||
const auto P = get_prolongation(fields[i]);
|
||||
|
||||
// If nullptr, assume Identity.
|
||||
if (P == nullptr)
|
||||
{
|
||||
x.GetBlock(i) = *x_l[i];
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ASSERT(P->Height() == x_l[i]->Size(),
|
||||
"prolongation not applicable to given input data size " <<
|
||||
P->Height() << " vs " << x_l[i]->Size());
|
||||
MFEM_ASSERT(P->Width() == x.GetBlock(i).Size(),
|
||||
"prolongation not applicable to given output data size " <<
|
||||
P->Width() << " vs " << x.GetBlock(i).Size());
|
||||
P->MultTranspose(*x_l[i], x.GetBlock(i));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
inline
|
||||
void prolongation_transpose(
|
||||
const std::vector<FieldDescriptor> fields,
|
||||
const std::vector<Vector *> &x_l,
|
||||
MultiVector &x)
|
||||
{
|
||||
MFEM_ASSERT(static_cast<int>(x_l.size()) == x.NumBlocks(),
|
||||
"error " << x_l.size() << " vs " << x.NumBlocks());
|
||||
for (size_t i = 0; i < x_l.size(); i++)
|
||||
{
|
||||
const auto P = get_prolongation(fields[i]);
|
||||
|
||||
// If nullptr, assume Identity.
|
||||
if (P == nullptr)
|
||||
{
|
||||
x[i] = *x_l[i];
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ASSERT(P->Height() == x_l[i]->Size(),
|
||||
"prolongation not applicable to given input data size " <<
|
||||
P->Height() << " vs " << x_l[i]->Size());
|
||||
MFEM_ASSERT(P->Width() == x[i].Size(),
|
||||
"prolongation not applicable to given output data size " <<
|
||||
P->Width() << " vs " << x[i].Size());
|
||||
P->MultTranspose(*x_l[i], x[i]);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename entity_t>
|
||||
void restriction(
|
||||
const std::vector<FieldDescriptor> fields,
|
||||
const std::vector<Vector *> &x_l,
|
||||
std::vector<Vector *> &x_e)
|
||||
{
|
||||
MFEM_ASSERT(x_l.size() == x_e.size(),
|
||||
"internal error " << x_l.size() << " vs " << x_e.size());
|
||||
for (size_t i = 0; i < fields.size(); i++)
|
||||
{
|
||||
int s = 0;
|
||||
const auto R = get_restriction<entity_t>(
|
||||
fields[i], ElementDofOrdering::LEXICOGRAPHIC);
|
||||
|
||||
// If nullptr, assume Identity.
|
||||
if (R == nullptr)
|
||||
{
|
||||
s = x_l[i]->Size();
|
||||
}
|
||||
else
|
||||
{
|
||||
s = R->Height();
|
||||
}
|
||||
|
||||
// TODO
|
||||
if (x_e[i] == nullptr)
|
||||
{
|
||||
x_e[i] = new Vector(s);
|
||||
}
|
||||
x_e[i]->SetSize(s);
|
||||
|
||||
if (R == nullptr)
|
||||
{
|
||||
x_e[i] = x_l[i];
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ASSERT(R->Width() == x_l[i]->Size(),
|
||||
"restriction not applicable to given input data size " <<
|
||||
R->Width() << " vs " << x_l[i]->Size());
|
||||
R->Mult(*x_l[i], *x_e[i]);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename entity_t>
|
||||
void prepare_residual(
|
||||
const std::vector<FieldDescriptor> &fields,
|
||||
std::vector<Vector *> &r_e)
|
||||
{
|
||||
for (size_t i = 0; i < fields.size(); i++)
|
||||
{
|
||||
int s = 0;
|
||||
if (std::holds_alternative<const QuadratureFunction *>(fields[i].data))
|
||||
{
|
||||
const auto fd = std::get<const QuadratureFunction *>(fields[i].data);
|
||||
s = fd->Size();
|
||||
}
|
||||
else
|
||||
{
|
||||
const auto R = get_restriction<entity_t>(
|
||||
fields[i], ElementDofOrdering::LEXICOGRAPHIC);
|
||||
s = R->Height();
|
||||
}
|
||||
|
||||
// TODO
|
||||
if (r_e[i] == nullptr)
|
||||
{
|
||||
r_e[i] = new Vector(s);
|
||||
}
|
||||
else
|
||||
{
|
||||
r_e[i]->SetSize(s);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename entity_t>
|
||||
void restriction_transpose(
|
||||
const std::vector<FieldDescriptor> &fields,
|
||||
const std::vector<Vector *> &x_e,
|
||||
std::vector<Vector *> &x_l)
|
||||
{
|
||||
for (size_t i = 0; i < fields.size(); i++)
|
||||
{
|
||||
int s = 0;
|
||||
const auto R = get_restriction<entity_t>(
|
||||
fields[i], ElementDofOrdering::LEXICOGRAPHIC);
|
||||
// TODO: if nullptr, assume Identity
|
||||
if (R == nullptr)
|
||||
{
|
||||
s = x_e[i]->Size();
|
||||
}
|
||||
else
|
||||
{
|
||||
s = R->Width();
|
||||
}
|
||||
|
||||
// TODO
|
||||
if (x_l[i] == nullptr)
|
||||
{
|
||||
x_l[i] = new Vector(s);
|
||||
}
|
||||
x_l[i]->SetSize(s);
|
||||
|
||||
// TODO: if nullptr, assume Identity
|
||||
if (R == nullptr)
|
||||
{
|
||||
x_l[i] = x_e[i];
|
||||
}
|
||||
else
|
||||
{
|
||||
R->MultTranspose(*x_e[i], *x_l[i]);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1326,6 +1640,10 @@ const DofToQuad *GetDofToQuad(const FieldDescriptor &f,
|
||||
return &arg->GetTypicalTraceElement()->GetDofToQuad(ir, mode);
|
||||
}
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const QuadratureFunction *>)
|
||||
{
|
||||
return nullptr;
|
||||
}
|
||||
else if constexpr (std::is_same_v<T, const ParameterSpace *>)
|
||||
{
|
||||
return &arg->GetDofToQuad();
|
||||
@@ -1457,7 +1775,7 @@ create_descriptors_to_fields_map(
|
||||
|
||||
auto f = [&](auto &fop, auto &map)
|
||||
{
|
||||
if constexpr (std::is_same_v<std::decay_t<decltype(fop)>, Weight>)
|
||||
if constexpr (is_weight_fop<std::decay_t<decltype(fop)>>::value)
|
||||
{
|
||||
// TODO-bug: stealing dimension from the first field
|
||||
fop.dim = GetDimension<entity_t>(fields[0]);
|
||||
@@ -2342,5 +2660,25 @@ std::array<DofToQuadMap, num_fields> create_dtq_maps(
|
||||
std::make_index_sequence<num_fields> {});
|
||||
}
|
||||
|
||||
struct QLayoutEntry
|
||||
{
|
||||
std::type_index type;
|
||||
std::vector<int> layout;
|
||||
|
||||
template <class Fop>
|
||||
QLayoutEntry(Fop, std::initializer_list<int> idx) :
|
||||
type(typeid(Fop)), layout(idx) {}
|
||||
};
|
||||
|
||||
static void ExtractQLayouts(
|
||||
const std::initializer_list<QLayoutEntry> entries,
|
||||
std::unordered_map<std::type_index, std::vector<int>>& out)
|
||||
{
|
||||
for (const auto& e : entries)
|
||||
{
|
||||
out[e.type] = e.layout;
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem::future
|
||||
#endif
|
||||
|
||||
+6
-6
@@ -320,8 +320,8 @@ public:
|
||||
error estimation procedure where the flux averaging is replaced by a global
|
||||
L2 projection (requiring a mass matrix solve).
|
||||
|
||||
The required BilinearFormIntegrator must implement the methods
|
||||
ComputeElementFlux() and ComputeFluxEnergy().
|
||||
The required BilinearFormIntegrator must implement the method
|
||||
ComputeElementFlux().
|
||||
|
||||
Implemented for the parallel case only.
|
||||
*/
|
||||
@@ -357,8 +357,8 @@ protected:
|
||||
|
||||
public:
|
||||
/** @brief Construct a new L2ZienkiewiczZhuEstimator object.
|
||||
@param integ This BilinearFormIntegrator must implement the methods
|
||||
ComputeElementFlux() and ComputeFluxEnergy().
|
||||
@param integ This BilinearFormIntegrator must implement the method
|
||||
ComputeElementFlux().
|
||||
@param sol The solution field whose error is to be estimated.
|
||||
@param flux_fes The L2ZienkiewiczZhuEstimator assumes ownership of this
|
||||
FiniteElementSpace and will call its Update() method when
|
||||
@@ -382,8 +382,8 @@ public:
|
||||
{ }
|
||||
|
||||
/** @brief Construct a new L2ZienkiewiczZhuEstimator object.
|
||||
@param integ This BilinearFormIntegrator must implement the methods
|
||||
ComputeElementFlux() and ComputeFluxEnergy().
|
||||
@param integ This BilinearFormIntegrator must implement the method
|
||||
ComputeElementFlux().
|
||||
@param sol The solution field whose error is to be estimated.
|
||||
@param flux_fes The L2ZienkiewiczZhuEstimator does NOT assume ownership
|
||||
of this FiniteElementSpace; will call its Update() method
|
||||
|
||||
+122
-44
@@ -663,58 +663,59 @@ const
|
||||
#pragma omp critical (DofToQuad)
|
||||
#endif
|
||||
{
|
||||
// If the new Dof2Quad is already present, e.g. added in a previous call
|
||||
// or added by another omp thread, return.
|
||||
// Do not run if the new Dof2Quad is already present, e.g. added in a
|
||||
// previous call or added by another omp thread.
|
||||
if (DofToQuad::SearchArray(dof2quad_array, ir,
|
||||
DofToQuad::LEXICOGRAPHIC_FULL))
|
||||
{ return; }
|
||||
|
||||
// Undo the native ordering which is what FiniteElement::GetDofToQuad
|
||||
// returns.
|
||||
auto *d2q_new = new DofToQuad(d2q);
|
||||
d2q_new->mode = DofToQuad::LEXICOGRAPHIC_FULL;
|
||||
const int nqpt = ir.GetNPoints();
|
||||
|
||||
const int b_dim = (range_type == VECTOR) ? dim : 1;
|
||||
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
DofToQuad::LEXICOGRAPHIC_FULL) == nullptr)
|
||||
{
|
||||
for (int d = 0; d < b_dim; d++)
|
||||
// Undo the native ordering which is what FiniteElement::GetDofToQuad
|
||||
// returns.
|
||||
auto *d2q_new = new DofToQuad(d2q);
|
||||
d2q_new->mode = DofToQuad::LEXICOGRAPHIC_FULL;
|
||||
const int nqpt = ir.GetNPoints();
|
||||
|
||||
const int b_dim = (range_type == VECTOR) ? dim : 1;
|
||||
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
{
|
||||
for (int j = 0; j < dof; j++)
|
||||
for (int d = 0; d < b_dim; d++)
|
||||
{
|
||||
const double val = d2q.B[i + nqpt*(d+b_dim*lex_ordering[j])];
|
||||
d2q_new->B[i+nqpt*(d+b_dim*j)] = val;
|
||||
d2q_new->Bt[j+dof*(i+nqpt*d)] = val;
|
||||
for (int j = 0; j < dof; j++)
|
||||
{
|
||||
const double val = d2q.B[i + nqpt*(d+b_dim*lex_ordering[j])];
|
||||
d2q_new->B[i+nqpt*(d+b_dim*j)] = val;
|
||||
d2q_new->Bt[j+dof*(i+nqpt*d)] = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
const int g_dim = [this]()
|
||||
{
|
||||
switch (deriv_type)
|
||||
const int g_dim = [this]()
|
||||
{
|
||||
case GRAD: return dim;
|
||||
case DIV: return 1;
|
||||
case CURL: return cdim;
|
||||
default: return 0;
|
||||
}
|
||||
}();
|
||||
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
{
|
||||
for (int d = 0; d < g_dim; d++)
|
||||
{
|
||||
for (int j = 0; j < dof; j++)
|
||||
switch (deriv_type)
|
||||
{
|
||||
const double val = d2q.G[i + nqpt*(d+g_dim*lex_ordering[j])];
|
||||
d2q_new->G[i+nqpt*(d+g_dim*j)] = val;
|
||||
d2q_new->Gt[j+dof*(i+nqpt*d)] = val;
|
||||
case GRAD: return dim;
|
||||
case DIV: return 1;
|
||||
case CURL: return cdim;
|
||||
default: return 0;
|
||||
}
|
||||
}();
|
||||
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
{
|
||||
for (int d = 0; d < g_dim; d++)
|
||||
{
|
||||
for (int j = 0; j < dof; j++)
|
||||
{
|
||||
const double val = d2q.G[i + nqpt*(d+g_dim*lex_ordering[j])];
|
||||
d2q_new->G[i+nqpt*(d+g_dim*j)] = val;
|
||||
d2q_new->Gt[j+dof*(i+nqpt*d)] = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
dof2quad_array.Append(d2q_new);
|
||||
}
|
||||
|
||||
dof2quad_array.Append(d2q_new);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1043,9 +1044,50 @@ void VectorFiniteElement::SetDerivMembers()
|
||||
switch (map_type)
|
||||
{
|
||||
case H_DIV:
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
switch (dim)
|
||||
{
|
||||
case 3: // div: 3D H_DIV -> 3D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
case 2: // div: 2D H_DIV -> 2D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_DIV_R2D:
|
||||
switch (dim)
|
||||
{
|
||||
case 2: // div: 2D H_DIV_R2D -> 2D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
case 1: // div: 1D H_DIV_R2D -> 1D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_DIV_R1D:
|
||||
switch (dim)
|
||||
{
|
||||
case 1: // div: 1D H_DIV_R1D -> 1D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_CURL:
|
||||
switch (dim)
|
||||
@@ -1063,13 +1105,49 @@ void VectorFiniteElement::SetDerivMembers()
|
||||
break;
|
||||
case 1:
|
||||
deriv_type = NONE;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
deriv_range_type = UNKNOWN_RANGE_TYPE;
|
||||
deriv_map_type = UNKNOWN_MAP_TYPE;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_CURL_R2D:
|
||||
switch (dim)
|
||||
{
|
||||
case 2:
|
||||
// curl: 2D H_CURL_R2D -> H_DIV_R2D
|
||||
deriv_type = CURL;
|
||||
deriv_range_type = VECTOR;
|
||||
deriv_map_type = H_DIV_R2D;
|
||||
break;
|
||||
case 1:
|
||||
// curl: 1D H_CURL_R2D -> H_DIV_R2D
|
||||
deriv_type = CURL;
|
||||
deriv_range_type = VECTOR;
|
||||
deriv_map_type = H_DIV_R2D;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_CURL_R1D:
|
||||
switch (dim)
|
||||
{
|
||||
case 1:
|
||||
// curl: 1D H_CURL_R1D -> H_DIV_R1D
|
||||
deriv_type = CURL;
|
||||
deriv_range_type = VECTOR;
|
||||
deriv_map_type = H_DIV_R1D;
|
||||
break;
|
||||
case 0:
|
||||
deriv_type = NONE;
|
||||
deriv_range_type = UNKNOWN_RANGE_TYPE;
|
||||
deriv_map_type = UNKNOWN_MAP_TYPE;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid MapType = " << map_type);
|
||||
}
|
||||
|
||||
+31
-3
@@ -295,10 +295,20 @@ public:
|
||||
$ u(x) = (1/w) \hat u(\hat x) $ */
|
||||
H_DIV, /**< For vector fields; preserves surface integrals of the
|
||||
normal component $ u(x) = (J/w) \hat u(\hat x) $ */
|
||||
H_CURL /**< For vector fields; preserves line integrals of the
|
||||
H_CURL, /**< For vector fields; preserves line integrals of the
|
||||
tangential component
|
||||
$ u(x) = J^{-t} \hat u(\hat x) $ (square J),
|
||||
$ u(x) = J(J^t J)^{-1} \hat u(\hat x) $ (general J) */
|
||||
H_DIV_R2D, /**< For 3-component vector fields in 2D; equivalent to a
|
||||
direct sum of an H_DIV basis and an INTEGRAL basis */
|
||||
H_CURL_R2D,/**< For 3-component vector fields in 2D; equivalent to a
|
||||
direct sum of an H_CURL basis and a VALUE basis */
|
||||
H_DIV_R1D, /**< For 3-component vector fields in 1D; equivalent to a
|
||||
direct sum of a VALUE basis and a pair of INTEGRAL
|
||||
bases */
|
||||
H_CURL_R1D /**< For 3-component vector fields in 1D; equivalent to a
|
||||
direct sum of an INTEGRAL basis and a pair of VALUE
|
||||
bases */
|
||||
};
|
||||
|
||||
/** @brief Enumeration for DerivType: defines which derivative method
|
||||
@@ -330,12 +340,28 @@ public:
|
||||
int GetDim() const { return dim; }
|
||||
|
||||
/** @brief Returns the vector dimension for vector-valued finite elements,
|
||||
which is also the dimension of the interpolation operation. */
|
||||
which is also the dimension of the interpolation operation and the
|
||||
width of the DenseMatrix argument in
|
||||
CalcVShape(const IntegrationPoint &ip, DenseMatrix &shape). */
|
||||
int GetRangeDim() const { return vdim; }
|
||||
|
||||
/// Returns the dimension of the curl for vector-valued finite elements.
|
||||
/** @brief Returns the vector dimension, in physical space, for
|
||||
vector-valued finite elements, which is also the width of the
|
||||
DenseMatrix argument in
|
||||
CalcPhysVShape(ElementTransformation &Trans, DenseMatrix &shape). */
|
||||
virtual int GetPhysRangeDim(int /* space_dim */) const { return vdim; }
|
||||
|
||||
/** Returns the dimension of the curl for vector-valued finite elements,
|
||||
which is also the width of the DenseMatrix argument in
|
||||
CalcCurlShape(const IntegrationPoint &ip, DenseMatrix &curl_shape). */
|
||||
int GetCurlDim() const { return cdim; }
|
||||
|
||||
/** Returns the dimension, in physical space, of the curl for vector-valued
|
||||
finite elements, which is also the width of the DenseMatrix argument in
|
||||
CalcPhysCurlShape(ElementTransformation &Trans, DenseMatrix &curl_shape).
|
||||
*/
|
||||
virtual int GetPhysCurlDim(int /* space_dim */) const { return cdim; }
|
||||
|
||||
/// Returns the Geometry::Type of the reference element.
|
||||
Geometry::Type GetGeomType() const { return geom_type; }
|
||||
|
||||
@@ -990,6 +1016,8 @@ protected:
|
||||
public:
|
||||
VectorFiniteElement(int D, Geometry::Type G, int Do, int O, int M,
|
||||
int F = FunctionSpace::Pk);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const override { return space_dim; }
|
||||
};
|
||||
|
||||
/// @brief Class for computing 1D special polynomials and their associated basis
|
||||
|
||||
+1
-1
@@ -589,7 +589,7 @@ void H1_TriangleElement::CalcHessian(const IntegrationPoint &ip,
|
||||
Vector shape_x(p + 1), shape_y(p + 1), shape_l(p + 1);
|
||||
Vector dshape_x(p + 1), dshape_y(p + 1), dshape_l(p + 1);
|
||||
Vector ddshape_x(p + 1), ddshape_y(p + 1), ddshape_l(p + 1);
|
||||
DenseMatrix ddu(dof, dim);
|
||||
DenseMatrix ddu(dof, (dim*(dim+1))/2);
|
||||
#endif
|
||||
|
||||
poly1d.CalcBasis(p, ip.x, shape_x, dshape_x, ddshape_x);
|
||||
|
||||
+4
-4
@@ -2531,7 +2531,7 @@ void ND_FuentesPyramidElement::calcCurlBasis(const int p,
|
||||
|
||||
ND_R1D_PointElement::ND_R1D_PointElement(int p)
|
||||
: VectorFiniteElement(1, Geometry::POINT, 2, p,
|
||||
H_CURL, FunctionSpace::Pk)
|
||||
H_CURL_R1D, FunctionSpace::Pk)
|
||||
{
|
||||
// VectorFiniteElement::SetDerivMembers doesn't support 0D H_CURL elements
|
||||
// so we mimic a 1D element and then correct the dimension here.
|
||||
@@ -2562,7 +2562,7 @@ ND_R1D_SegmentElement::ND_R1D_SegmentElement(const int p,
|
||||
const int cb_type,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 2, p,
|
||||
H_CURL, FunctionSpace::Pk),
|
||||
H_CURL_R1D, FunctionSpace::Pk),
|
||||
dof2tk(dof),
|
||||
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
|
||||
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
|
||||
@@ -2839,7 +2839,7 @@ ND_R2D_SegmentElement::ND_R2D_SegmentElement(const int p,
|
||||
const int cb_type,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, 2 * p + 1, p,
|
||||
H_CURL, FunctionSpace::Pk),
|
||||
H_CURL_R2D, FunctionSpace::Pk),
|
||||
dof2tk(dof),
|
||||
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
|
||||
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
|
||||
@@ -3023,7 +3023,7 @@ void ND_R2D_SegmentElement::Project(VectorCoefficient &vc,
|
||||
ND_R2D_FiniteElement::ND_R2D_FiniteElement(int p, Geometry::Type G, int Do,
|
||||
const real_t *tk_fe)
|
||||
: VectorFiniteElement(2, G, Do, p,
|
||||
H_CURL, FunctionSpace::Pk),
|
||||
H_CURL_R2D, FunctionSpace::Pk),
|
||||
tk(tk_fe),
|
||||
dof_map(dof),
|
||||
dof2tk(dof)
|
||||
|
||||
@@ -663,6 +663,9 @@ public:
|
||||
const int cb_type = BasisType::GaussLobatto,
|
||||
const int ob_type = BasisType::GaussLegendre);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const override { return 2; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 1; }
|
||||
|
||||
void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const override;
|
||||
|
||||
@@ -705,6 +708,9 @@ private:
|
||||
DenseMatrix &I) const;
|
||||
|
||||
public:
|
||||
int GetPhysRangeDim(int space_dim) const override { return 3; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 3; }
|
||||
|
||||
using FiniteElement::CalcVShape;
|
||||
using FiniteElement::CalcPhysCurlShape;
|
||||
|
||||
|
||||
+3
-3
@@ -2006,7 +2006,7 @@ RT_R1D_SegmentElement::RT_R1D_SegmentElement(const int p,
|
||||
const int cb_type,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 4, p + 1,
|
||||
H_DIV, FunctionSpace::Pk),
|
||||
H_DIV_R1D, FunctionSpace::Pk),
|
||||
dof2nk(dof),
|
||||
cbasis1d(poly1d.GetBasis(p + 1, VerifyClosed(cb_type))),
|
||||
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
|
||||
@@ -2281,7 +2281,7 @@ const real_t RT_R2D_SegmentElement::nk[2] = { 0.,1.};
|
||||
RT_R2D_SegmentElement::RT_R2D_SegmentElement(const int p,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, p + 1, p + 1,
|
||||
H_DIV, FunctionSpace::Pk),
|
||||
H_DIV_R2D, FunctionSpace::Pk),
|
||||
dof2nk(dof),
|
||||
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
|
||||
{
|
||||
@@ -2392,7 +2392,7 @@ void RT_R2D_SegmentElement::LocalInterpolation(const VectorFiniteElement &cfe,
|
||||
RT_R2D_FiniteElement::RT_R2D_FiniteElement(int p, Geometry::Type G, int Do,
|
||||
const real_t *nk_fe)
|
||||
: VectorFiniteElement(2, G, Do, p + 1,
|
||||
H_DIV, FunctionSpace::Pk),
|
||||
H_DIV_R2D, FunctionSpace::Pk),
|
||||
nk(nk_fe),
|
||||
dof_map(dof),
|
||||
dof2nk(dof)
|
||||
|
||||
@@ -510,6 +510,9 @@ public:
|
||||
RT_R2D_SegmentElement(const int p,
|
||||
const int ob_type = BasisType::GaussLegendre);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const override { return 2; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 0; }
|
||||
|
||||
void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const override;
|
||||
|
||||
@@ -547,6 +550,9 @@ private:
|
||||
DenseMatrix &I) const;
|
||||
|
||||
public:
|
||||
int GetPhysRangeDim(int space_dim) const override { return 3; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 0; }
|
||||
|
||||
using FiniteElement::CalcVShape;
|
||||
|
||||
void CalcVShape(ElementTransformation &Trans,
|
||||
|
||||
+1
-1
@@ -52,7 +52,7 @@
|
||||
#include "bounds.hpp"
|
||||
#include "particleset.hpp"
|
||||
|
||||
#include "dfem/doperator.hpp"
|
||||
// #include "dfem/doperator.hpp"
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
#include "pfespace.hpp"
|
||||
|
||||
+28
-19
@@ -282,14 +282,7 @@ int FiniteElementSpace::DofToVDof(int dof, int vd, int ndofs_) const
|
||||
void FiniteElementSpace::AdjustVDofs(Array<int> &vdofs)
|
||||
{
|
||||
int n = vdofs.Size(), *vdof = vdofs;
|
||||
for (int i = 0; i < n; i++)
|
||||
{
|
||||
int j;
|
||||
if ((j = vdof[i]) < 0)
|
||||
{
|
||||
vdof[i] = -1-j;
|
||||
}
|
||||
}
|
||||
for (int i = 0; i < n; i++) { vdof[i] = UnsignIndex(vdof[i]); }
|
||||
}
|
||||
|
||||
void FiniteElementSpace::GetElementVDofs(int i, Array<int> &vdofs,
|
||||
@@ -483,13 +476,14 @@ void FiniteElementSpace::ReorderElementToDofTable()
|
||||
for (int k = 0, dof_counter = 0; k < nnz; k++)
|
||||
{
|
||||
const int sdof = J[k]; // signed dof
|
||||
const int dof = (sdof < 0) ? -1-sdof : sdof;
|
||||
const int dof = UnsignIndex(sdof);
|
||||
int new_dof = dof_marker[dof];
|
||||
if (new_dof < 0)
|
||||
{
|
||||
dof_marker[dof] = new_dof = dof_counter++;
|
||||
}
|
||||
J[k] = (sdof < 0) ? -1-new_dof : new_dof; // preserve the sign of sdof
|
||||
// Preserve the sign of sdof
|
||||
J[k] = (sdof < 0) ? FlipIndexSign(new_dof) : new_dof;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -547,7 +541,7 @@ void MarkDofs(const Array<int> &dofs, Array<int> &mark_array)
|
||||
{
|
||||
for (auto d : dofs)
|
||||
{
|
||||
mark_array[d >= 0 ? d : -1 - d] = -1;
|
||||
mark_array[UnsignIndex(d)] = -1;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -931,7 +925,7 @@ void FiniteElementSpace::AddDependencies(
|
||||
if (std::abs(coef) > 1e-12)
|
||||
{
|
||||
const int mdof = master_dofs[j];
|
||||
if (mdof != sdof && mdof != (-1-sdof))
|
||||
if (mdof != sdof && mdof != FlipIndexSign(sdof))
|
||||
{
|
||||
deps.Add(sdof, mdof, coef);
|
||||
}
|
||||
@@ -1024,7 +1018,7 @@ int FiniteElementSpace::GetDegenerateFaceDofs(int index, Array<int> &dofs,
|
||||
// FiniteElementSpace::AddDependencies.
|
||||
|
||||
Array<int> edof;
|
||||
int order = GetEdgeDofs(-1 - index, edof, variant);
|
||||
int order = GetEdgeDofs(FlipIndexSign(index), edof, variant);
|
||||
|
||||
int nv = fec->DofForGeometry(Geometry::POINT);
|
||||
int ne = fec->DofForGeometry(Geometry::SEGMENT);
|
||||
@@ -1710,8 +1704,8 @@ SparseMatrix *FiniteElementSpace::RefinementMatrix_main(
|
||||
|
||||
for (int i = 0; i < fine_ldof; i++)
|
||||
{
|
||||
int r = DofToVDof(dofs[i], vd);
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
const int r = DofToVDof(dofs[i], vd);
|
||||
const int m = UnsignIndex(r);
|
||||
|
||||
if (!mark[m])
|
||||
{
|
||||
@@ -1772,7 +1766,7 @@ SparseMatrix *FiniteElementSpace::VariableOrderRefinementMatrix(
|
||||
for (int i = 0; i < fine_ldof; i++)
|
||||
{
|
||||
const int r = DofToVDof(dofs[i], vd);
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
const int m = UnsignIndex(r);
|
||||
|
||||
if (!mark[m])
|
||||
{
|
||||
@@ -2482,8 +2476,8 @@ SparseMatrix* FiniteElementSpace::DerefinementMatrix(int old_ndofs,
|
||||
{
|
||||
if (!std::isfinite(lR(i, 0))) { continue; }
|
||||
|
||||
int r = DofToVDof(dofs[i], vd);
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
const int r = DofToVDof(dofs[i], vd);
|
||||
const int m = UnsignIndex(r);
|
||||
|
||||
if (is_dg || !mark[m])
|
||||
{
|
||||
@@ -3201,7 +3195,7 @@ void FiniteElementSpace::CalcEdgeFaceVarOrders(
|
||||
else
|
||||
{
|
||||
// degenerate face (i.e., edge-face constraint)
|
||||
slave_orders |= edge_orders[-1 - slave.index];
|
||||
slave_orders |= edge_orders[FlipIndexSign(slave.index)];
|
||||
}
|
||||
}
|
||||
|
||||
@@ -3940,6 +3934,16 @@ const FiniteElement *FiniteElementSpace::GetBE(int i) const
|
||||
return BE;
|
||||
}
|
||||
|
||||
const FiniteElement *FiniteElementSpace::GetTypicalBE() const
|
||||
{
|
||||
if (mesh->GetNBE() > 0) { return GetBE(0); }
|
||||
|
||||
Geometry::Type geom = mesh->GetTypicalFaceGeometry();
|
||||
const FiniteElement *be = fec->FiniteElementForGeometry(geom);
|
||||
MFEM_VERIFY(be != nullptr, "Could not determine a typical BE!");
|
||||
return be;
|
||||
}
|
||||
|
||||
const FiniteElement *FiniteElementSpace::GetFaceElement(int i) const
|
||||
{
|
||||
MFEM_VERIFY(!IsVariableOrder(), "not implemented");
|
||||
@@ -3970,6 +3974,11 @@ const FiniteElement *FiniteElementSpace::GetFaceElement(int i) const
|
||||
return fe;
|
||||
}
|
||||
|
||||
const FiniteElement *FiniteElementSpace::GetTypicalFaceElement() const
|
||||
{
|
||||
return fec->FiniteElementForGeometry(mesh->GetTypicalFaceGeometry());
|
||||
}
|
||||
|
||||
const FiniteElement *FiniteElementSpace::GetEdgeElement(int i,
|
||||
int variant) const
|
||||
{
|
||||
|
||||
+14
-2
@@ -839,7 +839,7 @@ public:
|
||||
Note: For vector-valued elements, the results pads up the range dimension
|
||||
to the spatial dimension. E.g., consider a stack of 5 vector-valued
|
||||
elements each representing 2D vectors, living in a 3 dimensional space.
|
||||
Then this fucntion would give 15, not 10.
|
||||
Then this function would give 15, not 10.
|
||||
*/
|
||||
int GetVectorDim() const;
|
||||
|
||||
@@ -1150,7 +1150,7 @@ public:
|
||||
|
||||
/// Helper to return the DOF associated with a sign encoded DOF
|
||||
static inline int DecodeDof(int dof)
|
||||
{ return (dof >= 0) ? dof : (-1 - dof); }
|
||||
{ return UnsignIndex(dof); }
|
||||
|
||||
/// Helper to determine the DOF and sign of a sign encoded DOF
|
||||
static inline int DecodeDof(int dof, real_t& sign)
|
||||
@@ -1323,12 +1323,24 @@ public:
|
||||
associated with i'th boundary face in the mesh object. */
|
||||
const FiniteElement *GetBE(int i) const;
|
||||
|
||||
/// @brief Return a "typical" boundary element.
|
||||
///
|
||||
/// This can be used in situations where the local mesh partition may be
|
||||
/// empty.
|
||||
const FiniteElement *GetTypicalBE() const;
|
||||
|
||||
/** @brief Returns pointer to the FiniteElement in the FiniteElementCollection
|
||||
associated with i'th face in the mesh object. Faces in this case refer
|
||||
to the MESHDIM-1 primitive so in 2D they are segments and in 1D they are
|
||||
points.*/
|
||||
const FiniteElement *GetFaceElement(int i) const;
|
||||
|
||||
/// @brief Return a "typical" face element.
|
||||
///
|
||||
/// This can be used in situations where the local mesh partition may be
|
||||
/// empty.
|
||||
const FiniteElement *GetTypicalFaceElement() const;
|
||||
|
||||
/** @brief Returns pointer to the FiniteElement in the FiniteElementCollection
|
||||
associated with i'th edge in the mesh object. */
|
||||
const FiniteElement *GetEdgeElement(int i, int variant = 0) const;
|
||||
|
||||
+84
-74
@@ -345,27 +345,6 @@ void GridFunction::ComputeFlux(BilinearFormIntegrator &blfi,
|
||||
}
|
||||
}
|
||||
|
||||
int GridFunction::VectorDim() const
|
||||
{
|
||||
const FiniteElement *fe = fes->GetTypicalFE();
|
||||
if (!fe || fe->GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
return fes->GetVDim();
|
||||
}
|
||||
return fes->GetVDim()*std::max(fes->GetMesh()->SpaceDimension(),
|
||||
fe->GetRangeDim());
|
||||
}
|
||||
|
||||
int GridFunction::CurlDim() const
|
||||
{
|
||||
const FiniteElement *fe = fes->GetTypicalFE();
|
||||
if (!fe || fe->GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
return 2 * fes->GetMesh()->SpaceDimension() - 3;
|
||||
}
|
||||
return fes->GetVDim()*fe->GetCurlDim();
|
||||
}
|
||||
|
||||
void GridFunction::GetTrueDofs(Vector &tv) const
|
||||
{
|
||||
const SparseMatrix *R = fes->GetRestrictionMatrix();
|
||||
@@ -2050,6 +2029,18 @@ void GridFunction::AccumulateAndCountBdrValues(
|
||||
Coefficient *coeff[], VectorCoefficient *vcoeff, const Array<int> &attr,
|
||||
Array<int> &values_counter)
|
||||
{
|
||||
if (vcoeff)
|
||||
{
|
||||
MFEM_VERIFY(fes->GetVDim() == vcoeff->GetVDim(),
|
||||
"vcoeff vdim != fes VDim");
|
||||
MFEM_VERIFY(fes->GetTypicalBE()->GetMapType() == FiniteElement::VALUE &&
|
||||
fes->GetTypicalBE()->GetRangeType() ==
|
||||
FiniteElement::SCALAR,
|
||||
"Can only call ProjectBdrCoefficient on scalar value-type "
|
||||
"boundary elements. "
|
||||
"Did you intended to call ProjectBdrCoefficientNormal or "
|
||||
"ProjectBdrCoefficientTangent for vector finite elements?");
|
||||
}
|
||||
Array<int> vdofs;
|
||||
Vector vc;
|
||||
|
||||
@@ -2202,6 +2193,9 @@ void GridFunction::AccumulateAndCountBdrTangentValues(
|
||||
VectorCoefficient &vcoeff, const Array<int> &bdr_attr,
|
||||
Array<int> &values_counter)
|
||||
{
|
||||
MFEM_VERIFY(fes->GetTypicalBE()->GetPhysRangeDim(
|
||||
fes->GetMesh()->SpaceDimension()) == vcoeff.GetVDim(),
|
||||
"vcoeff vdim != PhysRangeDim");
|
||||
const FiniteElement *fe;
|
||||
ElementTransformation *T;
|
||||
Array<int> dofs;
|
||||
@@ -2355,6 +2349,9 @@ void GridFunction::ProjectDeltaCoefficient(DeltaCoefficient &delta_coeff,
|
||||
|
||||
void GridFunction::ProjectCoefficient(Coefficient &coeff, ProjectType type)
|
||||
{
|
||||
MFEM_VERIFY(
|
||||
VectorDim() == 1,
|
||||
"Cannot project scalar Coefficient onto vector GridFunction");
|
||||
DeltaCoefficient *delta_c = dynamic_cast<DeltaCoefficient *>(&coeff);
|
||||
DofTransformation doftrans;
|
||||
Array<int> vdofs;
|
||||
@@ -2630,6 +2627,7 @@ void GridFunction::ProjectCoefficient(
|
||||
void GridFunction::ProjectCoefficient(VectorCoefficient &vcoeff,
|
||||
ProjectType type)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == vcoeff.GetVDim(), "vcoeff vdim != VectorDim()");
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
DofTransformation doftrans;
|
||||
@@ -2945,6 +2943,7 @@ void GridFunction::ProjectCoefficientElementL2(VectorCoefficient &vcoeff)
|
||||
void GridFunction::ProjectCoefficient(
|
||||
VectorCoefficient &vcoeff, Array<int> &dofs)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == vcoeff.GetVDim(), "vcoeff vdim != VectorDim()");
|
||||
int el = -1;
|
||||
ElementTransformation *T = NULL;
|
||||
const FiniteElement *fe = NULL;
|
||||
@@ -2974,6 +2973,7 @@ void GridFunction::ProjectCoefficient(
|
||||
|
||||
void GridFunction::ProjectCoefficient(VectorCoefficient &vcoeff, int attribute)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == vcoeff.GetVDim(), "vcoeff vdim != VectorDim()");
|
||||
int i;
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
@@ -3030,9 +3030,14 @@ void GridFunction::ProjectCoefficient(Coefficient *coeff[])
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff,
|
||||
Array<int> &dof_attr)
|
||||
void GridFunction::ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff, Array<int> &dof_attr)
|
||||
{
|
||||
std::visit([&](auto* c)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == c->GetVDim(), "coeff vdim != VectorDim()");
|
||||
}, coeff);
|
||||
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
|
||||
@@ -3046,7 +3051,10 @@ void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff,
|
||||
{
|
||||
fes->GetElementVDofs(i, vdofs);
|
||||
vals.SetSize(vdofs.Size());
|
||||
fes->GetFE(i)->Project(coeff, *fes->GetElementTransformation(i), vals);
|
||||
std::visit([&](auto* c)
|
||||
{
|
||||
fes->GetFE(i)->Project(*c, *fes->GetElementTransformation(i), vals);
|
||||
}, coeff);
|
||||
|
||||
// the values in shared dofs are determined from the element with maximal
|
||||
// attribute
|
||||
@@ -3062,17 +3070,15 @@ void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff,
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff)
|
||||
{
|
||||
Array<int> dof_attr;
|
||||
ProjectDiscCoefficient(coeff, dof_attr);
|
||||
}
|
||||
|
||||
void GridFunction::ProjectDiscCoefficient(Coefficient &coeff, AvgType type)
|
||||
{
|
||||
// Harmonic (x1 ... xn) = [ (1/x1 + ... + 1/xn) / n ]^-1.
|
||||
// Arithmetic(x1 ... xn) = (x1 + ... + xn) / n.
|
||||
|
||||
MFEM_VERIFY(
|
||||
VectorDim() == 1,
|
||||
"Cannot project a scalar coefficient onto a vector GridFunction");
|
||||
|
||||
Array<int> zones_per_vdof;
|
||||
AccumulateAndCountZones(coeff, type, zones_per_vdof);
|
||||
|
||||
@@ -3082,6 +3088,7 @@ void GridFunction::ProjectDiscCoefficient(Coefficient &coeff, AvgType type)
|
||||
void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff,
|
||||
AvgType type)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == coeff.GetVDim(), "coeff vdim != VectorDim()");
|
||||
Array<int> zones_per_vdof;
|
||||
AccumulateAndCountZones(coeff, type, zones_per_vdof);
|
||||
|
||||
@@ -3137,52 +3144,33 @@ void GridFunction::ProjectBdrCoefficient(Coefficient *coeff[],
|
||||
}
|
||||
|
||||
void GridFunction::ProjectBdrCoefficientNormal(
|
||||
VectorCoefficient &vcoeff, const Array<int> &bdr_attr)
|
||||
Coefficient *coeff, VectorCoefficient *vcoeff, const Array<int> &bdr_attr)
|
||||
{
|
||||
#if 0
|
||||
// implementation for the case when the face dofs are integrals of the
|
||||
// normal component.
|
||||
const FiniteElement *fe;
|
||||
ElementTransformation *T;
|
||||
Array<int> dofs;
|
||||
int dim = vcoeff.GetVDim();
|
||||
Vector vc(dim), nor(dim), lvec, shape;
|
||||
|
||||
for (int i = 0; i < fes->GetNBE(); i++)
|
||||
MFEM_VERIFY(fes->GetVDim() == 1, "fespace VDim != 1");
|
||||
MFEM_VERIFY(fes->GetTypicalBE()->GetRangeType() == FiniteElement::SCALAR &&
|
||||
fes->GetTypicalBE()->GetMapType() == FiniteElement::INTEGRAL,
|
||||
"Not an RT FE space!");
|
||||
if (vcoeff)
|
||||
{
|
||||
if (bdr_attr[fes->GetBdrAttribute(i)-1] == 0)
|
||||
{
|
||||
continue;
|
||||
}
|
||||
fe = fes->GetBE(i);
|
||||
T = fes->GetBdrElementTransformation(i);
|
||||
int intorder = 2*fe->GetOrder(); // !!!
|
||||
const IntegrationRule &ir = IntRules.Get(fe->GetGeomType(), intorder);
|
||||
int nd = fe->GetDof();
|
||||
lvec.SetSize(nd);
|
||||
shape.SetSize(nd);
|
||||
lvec = 0.0;
|
||||
for (int j = 0; j < ir.GetNPoints(); j++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir.IntPoint(j);
|
||||
T->SetIntPoint(&ip);
|
||||
vcoeff.Eval(vc, *T, ip);
|
||||
CalcOrtho(T->Jacobian(), nor);
|
||||
fe->CalcShape(ip, shape);
|
||||
lvec.Add(ip.weight * (vc * nor), shape);
|
||||
}
|
||||
fes->GetBdrElementDofs(i, dofs);
|
||||
SetSubVector(dofs, lvec);
|
||||
MFEM_VERIFY(vcoeff->GetVDim() == fes->GetMesh()->SpaceDimension(),
|
||||
"vcoeff vdim (" << vcoeff->GetVDim()
|
||||
<< ") != SpaceDimension ("
|
||||
<< fes->GetMesh()->SpaceDimension() << ")");
|
||||
}
|
||||
#else
|
||||
|
||||
// implementation for the case when the face dofs are scaled point
|
||||
// values of the normal component.
|
||||
const FiniteElement *fe;
|
||||
ElementTransformation *T;
|
||||
Array<int> dofs;
|
||||
int dim = vcoeff.GetVDim();
|
||||
Vector vc(dim), nor(dim), lvec;
|
||||
Vector vc, nor, lvec;
|
||||
DofTransformation doftrans;
|
||||
if (vcoeff)
|
||||
{
|
||||
const int dim = vcoeff->GetVDim();
|
||||
vc.SetSize(dim);
|
||||
nor.SetSize(dim);
|
||||
}
|
||||
|
||||
for (int i = 0; i < fes->GetNBE(); i++)
|
||||
{
|
||||
@@ -3198,15 +3186,22 @@ void GridFunction::ProjectBdrCoefficientNormal(
|
||||
{
|
||||
const IntegrationPoint &ip = ir.IntPoint(j);
|
||||
T->SetIntPoint(&ip);
|
||||
vcoeff.Eval(vc, *T, ip);
|
||||
CalcOrtho(T->Jacobian(), nor);
|
||||
lvec(j) = (vc * nor);
|
||||
if (coeff)
|
||||
{
|
||||
const real_t c = coeff->Eval(*T, ip);
|
||||
lvec(j) = c * T->Weight();
|
||||
}
|
||||
else if (vcoeff)
|
||||
{
|
||||
vcoeff->Eval(vc, *T, ip);
|
||||
CalcOrtho(T->Jacobian(), nor);
|
||||
lvec(j) = (vc * nor);
|
||||
}
|
||||
}
|
||||
fes->GetBdrElementDofs(i, dofs, doftrans);
|
||||
doftrans.TransformPrimal(lvec);
|
||||
SetSubVector(dofs, lvec);
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
void GridFunction::ProjectBdrCoefficientTangent(
|
||||
@@ -5007,6 +5002,14 @@ real_t ExtrudeCoefficient::Eval(ElementTransformation &T,
|
||||
return sol_in.Eval(*T_in, ip);
|
||||
}
|
||||
|
||||
void VectorExtrudeCoefficient::Eval(Vector &v, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
ElementTransformation *T_in =
|
||||
mesh_in->GetElementTransformation(T.ElementNo / n);
|
||||
T_in->SetIntPoint(&ip);
|
||||
sol_in.Eval(v, *T_in, ip);
|
||||
}
|
||||
|
||||
GridFunction *Extrude1DGridFunction(Mesh *mesh, Mesh *mesh2d,
|
||||
GridFunction *sol, const int ny)
|
||||
@@ -5057,10 +5060,17 @@ GridFunction *Extrude1DGridFunction(Mesh *mesh, Mesh *mesh2d,
|
||||
return NULL;
|
||||
}
|
||||
FiniteElementSpace *solfes2d;
|
||||
// assuming sol is scalar
|
||||
solfes2d = new FiniteElementSpace(mesh2d, solfec2d);
|
||||
const int vdim = sol->FESpace()->GetVDim();
|
||||
solfes2d = new FiniteElementSpace(mesh2d, solfec2d, vdim);
|
||||
sol2d = new GridFunction(solfes2d);
|
||||
sol2d->MakeOwner(solfec2d);
|
||||
if (vdim > 1)
|
||||
{
|
||||
VectorGridFunctionCoefficient vcsol(sol);
|
||||
VectorExtrudeCoefficient vc2d(mesh, vcsol, ny);
|
||||
sol2d->ProjectCoefficient(vc2d);
|
||||
}
|
||||
else
|
||||
{
|
||||
GridFunctionCoefficient csol(sol);
|
||||
ExtrudeCoefficient c2d(mesh, csol, ny);
|
||||
@@ -5758,4 +5768,4 @@ std::pair<real_t, real_t> GridFunction::EstimateFunctionMaximum(
|
||||
return std::make_pair(global_max_lower, global_max_upper);
|
||||
}
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
+90
-18
@@ -23,6 +23,7 @@
|
||||
#include <limits>
|
||||
#include <ostream>
|
||||
#include <string>
|
||||
#include <variant>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -79,10 +80,18 @@ protected:
|
||||
bool wcoef,
|
||||
int subdomain);
|
||||
|
||||
/** Project a discontinuous vector coefficient in a continuous space and
|
||||
return in dof_attr the maximal attribute of the elements containing each
|
||||
degree of freedom. */
|
||||
void ProjectDiscCoefficient(VectorCoefficient &coeff, Array<int> &dof_attr);
|
||||
/** @brief Project a discontinuous (vector) coefficient as a grid function on
|
||||
a continuous finite element space. Return in dof_attr the maximal
|
||||
attribute of the elements containing each degree of freedom. */
|
||||
virtual void ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff, Array<int> &dof_attr);
|
||||
|
||||
/** @brief Project a discontinuous (vector) coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
virtual void ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff)
|
||||
{ Array<int> dof_attr; ProjectDiscCoefficient(coeff, dof_attr); };
|
||||
|
||||
/** Helper function for ProjectCoefficientElementL2 */
|
||||
void ProjectCoefficientElementL2_(Coefficient &coeff, Vector &sol, Vector &Va);
|
||||
@@ -150,11 +159,13 @@ public:
|
||||
|
||||
FiniteElementCollection *OwnFEC() { return fec_owned; }
|
||||
|
||||
/// Shortcut for calling FiniteElementSpace::GetVectorDim() on the underlying #fes
|
||||
int VectorDim() const;
|
||||
/** @brief Shortcut for calling FiniteElementSpace::GetVectorDim() on the
|
||||
underlying #fes */
|
||||
int VectorDim() const { return fes->GetVectorDim(); }
|
||||
|
||||
/// Shortcut for calling FiniteElementSpace::GetCurlDim() on the underlying #fes
|
||||
int CurlDim() const;
|
||||
/** @brief Shortcut for calling FiniteElementSpace::GetCurlDim() on the
|
||||
underlying #fes */
|
||||
int CurlDim() const { return fes->GetCurlDim(); }
|
||||
|
||||
/// Read only access to the (optional) internal true-dof Vector.
|
||||
const Vector &GetTrueVector() const
|
||||
@@ -513,10 +524,17 @@ public:
|
||||
but using an array of scalar coefficients for each component. */
|
||||
void ProjectCoefficient(Coefficient *coeff[]);
|
||||
|
||||
/** @brief Project a discontinuous coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
virtual void ProjectDiscCoefficient(Coefficient &coeff)
|
||||
{ ProjectDiscCoefficient(&coeff); }
|
||||
|
||||
/** @brief Project a discontinuous vector coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
virtual void ProjectDiscCoefficient(VectorCoefficient &coeff);
|
||||
virtual void ProjectDiscCoefficient(VectorCoefficient &coeff)
|
||||
{ ProjectDiscCoefficient(&coeff); }
|
||||
|
||||
enum AvgType {ARITHMETIC, HARMONIC};
|
||||
/** @brief Projects a discontinuous coefficient so that the values in shared
|
||||
@@ -532,6 +550,9 @@ public:
|
||||
std::unique_ptr<GridFunction> ProlongateToMaxOrder() const;
|
||||
|
||||
protected:
|
||||
void ProjectBdrCoefficientNormal(Coefficient *coeff, VectorCoefficient *vcoeff,
|
||||
const Array<int> &attr);
|
||||
|
||||
/** @brief Accumulates (depending on @a type) the values of @a coeff at all
|
||||
shared vdofs and counts in how many zones each vdof appears. */
|
||||
void AccumulateAndCountZones(Coefficient &coeff, AvgType type,
|
||||
@@ -656,15 +677,26 @@ public:
|
||||
virtual void ProjectBdrCoefficient(Coefficient *coeff[],
|
||||
const Array<int> &attr);
|
||||
|
||||
/** Project the normal component of the given VectorCoefficient on
|
||||
the boundary. Only boundary attributes that are marked in
|
||||
'bdr_attr' are projected. Assumes RT-type VectorFE GridFunction. */
|
||||
/** @brief Project the normal component of the given VectorCoefficient on
|
||||
the boundary. */
|
||||
/** Only boundary attributes that are marked in @a bdr_attr are
|
||||
projected. Assumes RT-type vector finite element GridFunction. */
|
||||
void ProjectBdrCoefficientNormal(VectorCoefficient &vcoeff,
|
||||
const Array<int> &bdr_attr);
|
||||
const Array<int> &bdr_attr)
|
||||
{ ProjectBdrCoefficientNormal(NULL, &vcoeff, bdr_attr); }
|
||||
|
||||
/** @brief Project the given Coefficient in the normal direction on the
|
||||
boundary. */
|
||||
/** Only boundary attributes that are marked in @a bdr_attr are projected.
|
||||
Assumes RT-type vector finite element GridFunction. */
|
||||
void ProjectBdrCoefficientNormal(Coefficient &coeff,
|
||||
const Array<int> &bdr_attr)
|
||||
{ ProjectBdrCoefficientNormal(&coeff, NULL, bdr_attr); }
|
||||
|
||||
/** @brief Project the tangential components of the given VectorCoefficient
|
||||
on the boundary. Only boundary attributes that are marked in @a bdr_attr
|
||||
are projected. Assumes ND-type VectorFE GridFunction. */
|
||||
on the boundary. */
|
||||
/** Only boundary attributes that are marked in @a bdr_attr
|
||||
are projected. Assumes ND-type vector finite element GridFunction. */
|
||||
virtual void ProjectBdrCoefficientTangent(VectorCoefficient &vcoeff,
|
||||
const Array<int> &bdr_attr);
|
||||
|
||||
@@ -1914,7 +1946,7 @@ real_t ComputeElementLpDistance(real_t p, int i,
|
||||
GridFunction& gf1, GridFunction& gf2);
|
||||
|
||||
|
||||
/// Class used for extruding scalar GridFunctions
|
||||
/// Class used for extruding a scalar coefficient
|
||||
class ExtrudeCoefficient : public Coefficient
|
||||
{
|
||||
private:
|
||||
@@ -1922,13 +1954,53 @@ private:
|
||||
Mesh *mesh_in;
|
||||
Coefficient &sol_in;
|
||||
public:
|
||||
/// Constructs an instance of VectorExtrudeCoefficient
|
||||
/**
|
||||
* @param m 1D mesh
|
||||
* @param s 1D vector coefficient
|
||||
* @param n_ number of transverse elements of the extruded mesh
|
||||
*/
|
||||
ExtrudeCoefficient(Mesh *m, Coefficient &s, int n_)
|
||||
: n(n_), mesh_in(m), sol_in(s) { }
|
||||
: n(n_), mesh_in(m), sol_in(s)
|
||||
{ MFEM_VERIFY(n > 0, "Number of transverse elements must be positive!"); }
|
||||
|
||||
real_t Eval(ElementTransformation &T, const IntegrationPoint &ip) override;
|
||||
|
||||
virtual ~ExtrudeCoefficient() { }
|
||||
};
|
||||
|
||||
/// Extrude a scalar 1D GridFunction, after extruding the mesh with Extrude1D.
|
||||
/// Class used for extruding a vector coefficient
|
||||
class VectorExtrudeCoefficient : public VectorCoefficient
|
||||
{
|
||||
private:
|
||||
int n;
|
||||
Mesh *mesh_in;
|
||||
VectorCoefficient &sol_in;
|
||||
public:
|
||||
/// Constructs an instance of VectorExtrudeCoefficient
|
||||
/**
|
||||
* @param m 1D mesh
|
||||
* @param s 1D vector coefficient
|
||||
* @param n_ number of transverse elements of the extruded mesh
|
||||
*/
|
||||
VectorExtrudeCoefficient(Mesh *m, VectorCoefficient &s, int n_)
|
||||
: VectorCoefficient(s.GetVDim()), n(n_), mesh_in(m), sol_in(s)
|
||||
{ MFEM_VERIFY(n > 0, "Number of transverse elements must be positive!"); }
|
||||
|
||||
void Eval(Vector &v, ElementTransformation &T,
|
||||
const IntegrationPoint &ip) override;
|
||||
using VectorCoefficient::Eval;
|
||||
|
||||
virtual ~VectorExtrudeCoefficient() { }
|
||||
};
|
||||
|
||||
/// Extrude a 1D GridFunction, after extruding the mesh with Extrude1D()
|
||||
/**
|
||||
* @param mesh 1D mesh
|
||||
* @param mesh2d extruded mesh
|
||||
* @param sol grid function
|
||||
* @param ny number of transverse elements of the extruded mesh
|
||||
*/
|
||||
GridFunction *Extrude1DGridFunction(Mesh *mesh, Mesh *mesh2d,
|
||||
GridFunction *sol, const int ny);
|
||||
|
||||
|
||||
+6
-5
@@ -490,7 +490,7 @@ void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
|
||||
}
|
||||
DEV.find_device = true;
|
||||
|
||||
const int id = gsl_comm->id, np = gsl_comm->np;
|
||||
const unsigned int id = gsl_comm->id, np = gsl_comm->np;
|
||||
|
||||
gsl_mfem_ref.SetSize(points_cnt * dim);
|
||||
gsl_mfem_elem.SetSize(points_cnt);
|
||||
@@ -652,7 +652,7 @@ void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
|
||||
{
|
||||
const int pp = hash_offset[i];
|
||||
/* don't send back to where it just came from */
|
||||
if (pp == p->proc)
|
||||
if (static_cast<unsigned>(pp) == p->proc)
|
||||
{
|
||||
continue;
|
||||
}
|
||||
@@ -1068,7 +1068,7 @@ void FindPointsGSLIB::InterpolateOnDevice(const Vector &field_in_evec,
|
||||
sarray_transfer(struct evalOutPt_t, &outpt, proc, 1, cr);
|
||||
|
||||
opt = (evalOutPt_t *)outpt.ptr;
|
||||
for (int index = 0; index < outpt.n; index++)
|
||||
for (size_t index = 0; index < outpt.n; index++)
|
||||
{
|
||||
int idx = ordering == Ordering::byNODES ?
|
||||
opt->index + i*points_cnt :
|
||||
@@ -1413,7 +1413,7 @@ void FindPointsGSLIB::SetupSplitMeshesAndIntegrationRules(const int order)
|
||||
{
|
||||
MFEM_VERIFY(mesh, "Setup FindPointsGSLIB with mesh first.");
|
||||
const int dof1D = order+1;
|
||||
const int dim = mesh->Dimension();
|
||||
dim = mesh->Dimension();
|
||||
|
||||
SetupSplitMeshes();
|
||||
if (dim == 2)
|
||||
@@ -2254,7 +2254,8 @@ void FindPointsGSLIB::DistributeInterpolatedValues(const Vector &int_vals,
|
||||
sarray_transfer(struct out_pt, outpt, proc, 1, cr);
|
||||
|
||||
// Store received data
|
||||
MFEM_VERIFY(outpt->n == points_cnt, "Incompatible size. Number of points "
|
||||
MFEM_VERIFY(outpt->n == static_cast<size_t>(points_cnt),
|
||||
"Incompatible size. Number of points "
|
||||
"received does not match the number of points originally "
|
||||
"found using FindPoints.");
|
||||
|
||||
|
||||
@@ -202,13 +202,19 @@ protected:
|
||||
const int dof1dsol, const int ordering);
|
||||
|
||||
public:
|
||||
/// Serial constructor
|
||||
FindPointsGSLIB();
|
||||
|
||||
/// Serial constructor + setup with given Mesh (see \ref Setup)
|
||||
FindPointsGSLIB(Mesh &mesh_in, const double bb_t = 0.1,
|
||||
const double newt_tol = 1.0e-12,
|
||||
const int npt_max = 256);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
/// Constructor for ParMesh
|
||||
FindPointsGSLIB(MPI_Comm comm_);
|
||||
|
||||
/// Constructor + setup with given ParMesh (see \ref Setup)
|
||||
FindPointsGSLIB(ParMesh &mesh_in, const double bb_t = 0.1,
|
||||
const double newt_tol = 1.0e-12,
|
||||
const int npt_max = 256);
|
||||
|
||||
@@ -254,7 +254,7 @@ get_edge(const double *elx[2], const double *wtend, int ei,
|
||||
edge.dxdn[d] = workspace + (2 + d) * pN; //dxdn and dydn at DOFs along edge
|
||||
}
|
||||
|
||||
if (side_init != (1u << ei))
|
||||
if (static_cast<unsigned>(side_init) != (1u << ei))
|
||||
{
|
||||
#define ELX(d, j, k) elx[d][j + k * pN] // assumes lexicographic ordering
|
||||
for (int d = 0; d < 2; ++d)
|
||||
|
||||
@@ -294,7 +294,7 @@ get_face(const double *elx[3], const double *wtend, int fi, double *workspace,
|
||||
face.dxdn[d] = workspace+(3+d)*p_Nfr;
|
||||
}
|
||||
|
||||
if (side_init != (1u << fi))
|
||||
if (static_cast<unsigned>(side_init) != (1u << fi))
|
||||
{
|
||||
const int e_stride[3] = {1, pN, pN*pN};
|
||||
#define ELX(d, j, k, l) elx[d][j*e_stride[d1]+k*e_stride[d2]+l*e_stride[dn]]
|
||||
@@ -342,7 +342,7 @@ get_edge(const double *elx[3], const double *wtend, int ei, double *workspace,
|
||||
|
||||
if (jidx >= 3*pN) { return edge; }
|
||||
|
||||
if (side_init != (64u << ei))
|
||||
if (static_cast<unsigned>(side_init) != (64u << ei))
|
||||
{
|
||||
const int e_stride[3] = {1, pN, pN*pN};
|
||||
#define ELX(d, j, k, l) elx[d][j*e_stride[de]+k*e_stride[dn1]+l*e_stride[dn2]]
|
||||
|
||||
@@ -197,15 +197,21 @@ static void EAHdivAssemble3D(const int NE,
|
||||
// Assemble (one row per thread)
|
||||
MFEM_FOREACH_THREAD(idx_i, x, NDOF)
|
||||
{
|
||||
// NOTE: due to an llvm backend bug, usage of the modulus operator
|
||||
// has been removed from this foreach section.
|
||||
const int ic = idx_i / NDOF_C;
|
||||
const int idx_ii = idx_i % NDOF_C;
|
||||
const int idx_ii = idx_i - ic * NDOF_C; // idx_i % NDOF_C
|
||||
|
||||
const int nx_i = (ic == 0) ? D1D : D1D-1;
|
||||
const int ny_i = (ic == 1) ? D1D : D1D-1;
|
||||
|
||||
const int ix = idx_ii % nx_i;
|
||||
const int iy = (idx_ii / nx_i) % ny_i;
|
||||
const int iz = (idx_ii / nx_i) / ny_i;
|
||||
const int qx_i = idx_ii / nx_i;
|
||||
const int ix = idx_ii - qx_i * nx_i; // idx_ii % nx_i
|
||||
|
||||
const int qy_i = qx_i / ny_i;
|
||||
const int iy = qx_i - qy_i * ny_i; // (idx_ii / nx_i) % ny_i
|
||||
|
||||
const int iz = qy_i; // (idx_ii / nx_i) / ny_i
|
||||
|
||||
const real_t (&Bi1)[MQ1][MD1] = (ic == 0) ? r_Bc : r_Bo;
|
||||
const real_t (&Bi2)[MQ1][MD1] = (ic == 1) ? r_Bc : r_Bo;
|
||||
@@ -214,14 +220,18 @@ static void EAHdivAssemble3D(const int NE,
|
||||
for (int idx_j = 0; idx_j < NDOF; ++idx_j)
|
||||
{
|
||||
const int jc = idx_j / NDOF_C;
|
||||
const int idx_jj = idx_j % NDOF_C;
|
||||
const int idx_jj = idx_j - jc * NDOF_C; // idx_j % NDOF_C
|
||||
|
||||
const int nx_j = (jc == 0) ? D1D : D1D-1;
|
||||
const int ny_j = (jc == 1) ? D1D : D1D-1;
|
||||
|
||||
const int jx = idx_jj % nx_j;
|
||||
const int jy = (idx_jj / nx_j) % ny_j;
|
||||
const int jz = (idx_jj / nx_j) / ny_j;
|
||||
const int qx_j = idx_jj / nx_j;
|
||||
const int jx = idx_jj - qx_j * nx_j; // idx_jj % nx_j
|
||||
|
||||
const int qy_j = qx_j / ny_j;
|
||||
const int jy = qx_j - qy_j * ny_j; // (idx_jj / nx_j) % ny_j
|
||||
|
||||
const int jz = qy_j; // (idx_jj / nx_j) / ny_j
|
||||
|
||||
const real_t (&Bj1)[MQ1][MD1] = (jc == 0) ? r_Bc : r_Bo;
|
||||
const real_t (&Bj2)[MQ1][MD1] = (jc == 1) ? r_Bc : r_Bo;
|
||||
|
||||
+811
-327
File diff suppressed because it is too large
Load Diff
+63
-64
@@ -43,56 +43,52 @@ public:
|
||||
index = i;
|
||||
}
|
||||
|
||||
void Set3w(const real_t x1, const real_t x2, const real_t x3, const real_t w)
|
||||
{ x = x1; y = x2; z = x3; weight = w; }
|
||||
void Set2w(const real_t x1, const real_t x2, const real_t w)
|
||||
{ x = x1; y = x2; weight = w; }
|
||||
void Set1w(const real_t x1, const real_t w)
|
||||
{ x = x1; weight = w; }
|
||||
|
||||
void Set3w(const real_t *p) { Set3w(p[0], p[1], p[2], p[3]); }
|
||||
void Set2w(const real_t *p) { Set2w(p[0], p[1], p[2]); }
|
||||
void Set1w(const real_t *p) { Set1w(p[0], p[1]); }
|
||||
|
||||
void Set3(const real_t x1, const real_t x2, const real_t x3)
|
||||
{ x = x1; y = x2; z = x3; }
|
||||
void Set2(const real_t x1, const real_t x2)
|
||||
{ x = x1; y = x2; }
|
||||
void Set1(const real_t x1)
|
||||
{ x = x1; }
|
||||
|
||||
void Set3(const real_t *p) { Set3(p[0], p[1], p[2]); }
|
||||
void Set2(const real_t *p) { Set2(p[0], p[1]); }
|
||||
void Set1(const real_t *p) { Set1(p[0]); }
|
||||
|
||||
void Set(const real_t x1, const real_t x2, const real_t x3, const real_t w)
|
||||
{ Set3w(x1, x2, x3, w); }
|
||||
|
||||
void Set(const real_t *p, const int dim)
|
||||
{
|
||||
MFEM_ASSERT(1 <= dim && dim <= 3, "invalid dim: " << dim);
|
||||
x = p[0];
|
||||
if (dim > 1)
|
||||
switch (dim)
|
||||
{
|
||||
y = p[1];
|
||||
if (dim > 2)
|
||||
{
|
||||
z = p[2];
|
||||
}
|
||||
case 3: Set3(p); break;
|
||||
case 2: Set2(p); break;
|
||||
case 1: Set1(p); break;
|
||||
}
|
||||
}
|
||||
|
||||
void Get(real_t *p, const int dim) const
|
||||
{
|
||||
MFEM_ASSERT(1 <= dim && dim <= 3, "invalid dim: " << dim);
|
||||
p[0] = x;
|
||||
if (dim > 1)
|
||||
switch (dim)
|
||||
{
|
||||
p[1] = y;
|
||||
if (dim > 2)
|
||||
{
|
||||
p[2] = z;
|
||||
}
|
||||
case 3: p[2] = z;
|
||||
case 2: p[1] = y;
|
||||
case 1: p[0] = x;
|
||||
}
|
||||
}
|
||||
|
||||
void Set(const real_t x1, const real_t x2, const real_t x3, const real_t w)
|
||||
{ x = x1; y = x2; z = x3; weight = w; }
|
||||
|
||||
void Set3w(const real_t *p) { x = p[0]; y = p[1]; z = p[2]; weight = p[3]; }
|
||||
|
||||
void Set3(const real_t x1, const real_t x2, const real_t x3)
|
||||
{ x = x1; y = x2; z = x3; }
|
||||
|
||||
void Set3(const real_t *p) { x = p[0]; y = p[1]; z = p[2]; }
|
||||
|
||||
void Set2w(const real_t x1, const real_t x2, const real_t w)
|
||||
{ x = x1; y = x2; weight = w; }
|
||||
|
||||
void Set2w(const real_t *p) { x = p[0]; y = p[1]; weight = p[2]; }
|
||||
|
||||
void Set2(const real_t x1, const real_t x2) { x = x1; y = x2; }
|
||||
|
||||
void Set2(const real_t *p) { x = p[0]; y = p[1]; }
|
||||
|
||||
void Set1w(const real_t x1, const real_t w) { x = x1; weight = w; }
|
||||
|
||||
void Set1w(const real_t *p) { x = p[0]; weight = p[1]; }
|
||||
};
|
||||
|
||||
/// Class for an integration rule - an Array of IntegrationPoint.
|
||||
@@ -125,18 +121,6 @@ private:
|
||||
void AddTriPoints3b(const int off, const real_t b, const real_t weight)
|
||||
{ AddTriPoints3(off, (1. - b)/2., b, weight); }
|
||||
|
||||
void AddTriPoints3R(const int off, const real_t a, const real_t b,
|
||||
const real_t c, const real_t weight)
|
||||
{
|
||||
IntPoint(off + 0).Set2w(a, b, weight);
|
||||
IntPoint(off + 1).Set2w(c, a, weight);
|
||||
IntPoint(off + 2).Set2w(b, c, weight);
|
||||
}
|
||||
|
||||
void AddTriPoints3R(const int off, const real_t a, const real_t b,
|
||||
const real_t weight)
|
||||
{ AddTriPoints3R(off, a, b, 1. - a - b, weight); }
|
||||
|
||||
void AddTriPoints6(const int off, const real_t a, const real_t b,
|
||||
const real_t c, const real_t weight)
|
||||
{
|
||||
@@ -183,14 +167,6 @@ private:
|
||||
AddTetPoints3(off + 1, a, 1. - 3.*a, weight);
|
||||
}
|
||||
|
||||
// given b, add the permutations of (a,a,a,b), where 3*a + b = 1
|
||||
void AddTetPoints4b(const int off, const real_t b, const real_t weight)
|
||||
{
|
||||
const real_t a = (1. - b)/3.;
|
||||
IntPoint(off).Set(a, a, a, weight);
|
||||
AddTetPoints3(off + 1, a, b, weight);
|
||||
}
|
||||
|
||||
// add the permutations of (a,a,b,b), 2*(a + b) = 1
|
||||
void AddTetPoints6(const int off, const real_t a, const real_t weight)
|
||||
{
|
||||
@@ -209,14 +185,37 @@ private:
|
||||
AddTetPoints6(off + 6, a, bc, cb, weight);
|
||||
}
|
||||
|
||||
// given (b,c), add the permutations of (a,a,b,c), 2*a + b + c = 1
|
||||
void AddTetPoints12bc(const int off, const real_t b, const real_t c,
|
||||
const real_t weight)
|
||||
// add all 24 permutations of (a,b,c,d) where a+b+c+d = 1, all distinct
|
||||
void AddTetPoints24(const int off, const real_t a, const real_t b,
|
||||
const real_t c, const real_t weight)
|
||||
{
|
||||
const real_t a = (1. - b - c)/2.;
|
||||
AddTetPoints3(off, a, b, weight);
|
||||
AddTetPoints3(off + 3, a, c, weight);
|
||||
AddTetPoints6(off + 6, a, b, c, weight);
|
||||
const real_t d = 1. - a - b - c;
|
||||
// all 24 permutations of 4 distinct barycentric coordinates
|
||||
// permuting which coordinate goes to x, y, z (4th is 1-x-y-z)
|
||||
IntPoint(off + 0).Set(a, b, c, weight);
|
||||
IntPoint(off + 1).Set(a, b, d, weight);
|
||||
IntPoint(off + 2).Set(a, c, b, weight);
|
||||
IntPoint(off + 3).Set(a, c, d, weight);
|
||||
IntPoint(off + 4).Set(a, d, b, weight);
|
||||
IntPoint(off + 5).Set(a, d, c, weight);
|
||||
IntPoint(off + 6).Set(b, a, c, weight);
|
||||
IntPoint(off + 7).Set(b, a, d, weight);
|
||||
IntPoint(off + 8).Set(b, c, a, weight);
|
||||
IntPoint(off + 9).Set(b, c, d, weight);
|
||||
IntPoint(off + 10).Set(b, d, a, weight);
|
||||
IntPoint(off + 11).Set(b, d, c, weight);
|
||||
IntPoint(off + 12).Set(c, a, b, weight);
|
||||
IntPoint(off + 13).Set(c, a, d, weight);
|
||||
IntPoint(off + 14).Set(c, b, a, weight);
|
||||
IntPoint(off + 15).Set(c, b, d, weight);
|
||||
IntPoint(off + 16).Set(c, d, a, weight);
|
||||
IntPoint(off + 17).Set(c, d, b, weight);
|
||||
IntPoint(off + 18).Set(d, a, b, weight);
|
||||
IntPoint(off + 19).Set(d, a, c, weight);
|
||||
IntPoint(off + 20).Set(d, b, a, weight);
|
||||
IntPoint(off + 21).Set(d, b, c, weight);
|
||||
IntPoint(off + 22).Set(d, c, a, weight);
|
||||
IntPoint(off + 23).Set(d, c, b, weight);
|
||||
}
|
||||
|
||||
public:
|
||||
|
||||
+3
-1
@@ -297,7 +297,8 @@ void LinearForm::Assemble()
|
||||
tr = mesh->GetBdrFaceTransformations(i);
|
||||
if (tr != NULL)
|
||||
{
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs);
|
||||
mfem::DofTransformation doftrans;
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs, doftrans);
|
||||
for (int k = 0; k < boundary_face_integs.Size(); k++)
|
||||
{
|
||||
if (boundary_face_integs_marker[k] &&
|
||||
@@ -307,6 +308,7 @@ void LinearForm::Assemble()
|
||||
boundary_face_integs[k]->
|
||||
AssembleRHSElementVect(*fes->GetFE(tr->Elem1No),
|
||||
*tr, elemvect);
|
||||
doftrans.TransformDual(elemvect);
|
||||
AddElementVector (vdofs, elemvect);
|
||||
}
|
||||
}
|
||||
|
||||
+2
-2
@@ -164,8 +164,8 @@ private:
|
||||
|
||||
public:
|
||||
/// Constructs the domain integrator $ (Q, \nabla v) $
|
||||
DomainLFGradIntegrator(VectorCoefficient &QF)
|
||||
: DeltaLFIntegrator(QF), Q(QF) { }
|
||||
DomainLFGradIntegrator(VectorCoefficient &QF, const IntegrationRule *ir = NULL)
|
||||
: DeltaLFIntegrator(QF, ir), Q(QF) { }
|
||||
|
||||
bool SupportsDevice() const override { return true; }
|
||||
|
||||
|
||||
+6
-5
@@ -158,15 +158,16 @@ void LORBase::ConstructLocalDofPermutation(Array<int> &perm_) const
|
||||
int i;
|
||||
i = dofmap_lor[off_lor + i1 + i2*2];
|
||||
int s1 = i < 0 ? -1 : 1;
|
||||
int idof_lor = vdof_lor[absdof(i)];
|
||||
int idof_lor = vdof_lor[UnsignIndex(i)];
|
||||
i = dofmap_ho[off_ho + i1*n1 + i2*n2];
|
||||
int s2 = i < 0 ? -1 : 1;
|
||||
int idof_ho = vdof_ho[absdof(i)];
|
||||
int idof_ho = vdof_ho[UnsignIndex(i)];
|
||||
int s3 = idof_lor < 0 ? -1 : 1;
|
||||
int s4 = idof_ho < 0 ? -1 : 1;
|
||||
int s = s1*s2*s3*s4;
|
||||
i = absdof(idof_ho);
|
||||
perm_[absdof(idof_lor)] = s < 0 ? -1-absdof(i) : absdof(i);
|
||||
i = UnsignIndex(idof_ho);
|
||||
perm_[UnsignIndex(idof_lor)] = s < 0 ? -1-UnsignIndex(i) :
|
||||
UnsignIndex(i);
|
||||
}
|
||||
}
|
||||
};
|
||||
@@ -232,7 +233,7 @@ void LORBase::ConstructDofPermutation() const
|
||||
int j = l_perm[i];
|
||||
int s = j < 0 ? -1 : 1;
|
||||
int t_i = pfes_lor->GetLocalTDofNumber(i);
|
||||
int t_j = pfes_ho->GetLocalTDofNumber(absdof(j));
|
||||
int t_j = pfes_ho->GetLocalTDofNumber(UnsignIndex(j));
|
||||
// Either t_i and t_j both -1, or both non-negative
|
||||
if ((t_i < 0 && t_j >=0) || (t_j < 0 && t_i >= 0))
|
||||
{
|
||||
|
||||
@@ -57,8 +57,6 @@ private:
|
||||
/// values (after temporarily changing them for LOR assembly).
|
||||
void ResetIntegrationRules(GetIntegratorsFn get_integrators);
|
||||
|
||||
static inline int absdof(int i) { return i < 0 ? -1-i : i; }
|
||||
|
||||
protected:
|
||||
enum FESpaceType { H1, ND, RT, L2, INVALID };
|
||||
|
||||
|
||||
@@ -224,6 +224,9 @@ public:
|
||||
/** @see GetGradient(const Vector &) */
|
||||
Operator &GetGradient(const Vector &x, bool finalize) const;
|
||||
|
||||
/// Suppress a warning about hiding overloaded virtual function.
|
||||
using Operator::GetGradient;
|
||||
|
||||
/// Update the NonlinearForm to propagate updates of the associated FE space.
|
||||
/** After calling this method, the essential boundary conditions need to be
|
||||
set again. */
|
||||
|
||||
+41
-47
@@ -424,7 +424,7 @@ void ParFiniteElementSpace::GetGroupComm(
|
||||
{
|
||||
if (ind[l] < 0)
|
||||
{
|
||||
dofs[l] = m + (-1-ind[l]);
|
||||
dofs[l] = m + FlipIndexSign(ind[l]);
|
||||
if (g_ldof_sign)
|
||||
{
|
||||
(*g_ldof_sign)[dofs[l]] = -1;
|
||||
@@ -462,7 +462,7 @@ void ParFiniteElementSpace::GetGroupComm(
|
||||
{
|
||||
if (ind[l] < 0)
|
||||
{
|
||||
dofs[l] = m + (-1-ind[l]);
|
||||
dofs[l] = m + FlipIndexSign(ind[l]);
|
||||
if (g_ldof_sign)
|
||||
{
|
||||
(*g_ldof_sign)[dofs[l]] = -1;
|
||||
@@ -500,7 +500,7 @@ void ParFiniteElementSpace::GetGroupComm(
|
||||
{
|
||||
if (ind[l] < 0)
|
||||
{
|
||||
dofs[l] = m + (-1-ind[l]);
|
||||
dofs[l] = m + FlipIndexSign(ind[l]);
|
||||
if (g_ldof_sign)
|
||||
{
|
||||
(*g_ldof_sign)[dofs[l]] = -1;
|
||||
@@ -538,16 +538,16 @@ void ParFiniteElementSpace::ApplyLDofSigns(Array<int> &dofs) const
|
||||
{
|
||||
if (dofs[i] < 0)
|
||||
{
|
||||
if (ldof_sign[-1-dofs[i]] < 0)
|
||||
if (ldof_sign[FlipIndexSign(dofs[i])] < 0)
|
||||
{
|
||||
dofs[i] = -1-dofs[i];
|
||||
dofs[i] = FlipIndexSign(dofs[i]);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
if (ldof_sign[dofs[i]] < 0)
|
||||
{
|
||||
dofs[i] = -1-dofs[i];
|
||||
dofs[i] = FlipIndexSign(dofs[i]);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -699,7 +699,8 @@ void ParFiniteElementSpace::GetSharedEdgeDofs(
|
||||
for (int i = 0; i < dofs.Size(); i++)
|
||||
{
|
||||
const int di = dofs[i];
|
||||
dofs[i] = (di >= 0) ? rdofs[di] : -1-rdofs[-1-di];
|
||||
dofs[i] = di >= 0 ? rdofs[di] :
|
||||
FlipIndexSign(rdofs[FlipIndexSign(di)]);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -723,7 +724,8 @@ void ParFiniteElementSpace::GetSharedTriangleDofs(
|
||||
for (int i = 0; i < dofs.Size(); i++)
|
||||
{
|
||||
const int di = dofs[i];
|
||||
dofs[i] = (di >= 0) ? rdofs[di] : -1-rdofs[-1-di];
|
||||
dofs[i] = di >= 0 ? rdofs[di] :
|
||||
FlipIndexSign(rdofs[FlipIndexSign(di)]);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -747,7 +749,8 @@ void ParFiniteElementSpace::GetSharedQuadrilateralDofs(
|
||||
for (int i = 0; i < dofs.Size(); i++)
|
||||
{
|
||||
const int di = dofs[i];
|
||||
dofs[i] = (di >= 0) ? rdofs[di] : -1-rdofs[-1-di];
|
||||
dofs[i] = (di >= 0) ? rdofs[di] :
|
||||
FlipIndexSign(rdofs[FlipIndexSign(di)]);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1487,7 +1490,7 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
|
||||
GetElementVDofs(my_elems[i], ldofs);
|
||||
for (int j = 0; j < ldofs.Size(); j++)
|
||||
{
|
||||
int ldof = (ldofs[j] >= 0 ? ldofs[j] : -1-ldofs[j]);
|
||||
int ldof = UnsignIndex(ldofs[j]);
|
||||
|
||||
if (ldof_marker[ldof] != fn)
|
||||
{
|
||||
@@ -1548,7 +1551,7 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
|
||||
GetElementVDofs(my_elems[i], ldofs);
|
||||
for (int j = 0; j < ldofs.Size(); j++)
|
||||
{
|
||||
int ldof = (ldofs[j] >= 0 ? ldofs[j] : -1-ldofs[j]);
|
||||
int ldof = UnsignIndex(ldofs[j]);
|
||||
|
||||
if (ldof_marker[ldof] != fn)
|
||||
{
|
||||
@@ -1573,14 +1576,15 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
|
||||
|
||||
for (int i = 0; i < num_ldofs; i++)
|
||||
{
|
||||
int ldof = (ldofs_fn[i] >= 0 ? ldofs_fn[i] : -1-ldofs_fn[i]);
|
||||
int ldof = UnsignIndex(ldofs_fn[i]);
|
||||
ldof_marker[ldof] = i;
|
||||
}
|
||||
|
||||
for ( ; j < j_end; j++)
|
||||
{
|
||||
int ldof = (send_J[j] >= 0 ? send_J[j] : -1-send_J[j]);
|
||||
send_J[j] = (send_J[j] >= 0 ? ldof_marker[ldof] : -1-ldof_marker[ldof]);
|
||||
const int ldof = UnsignIndex(send_J[j]);
|
||||
send_J[j] = (send_J[j] >= 0 ? ldof_marker[ldof] :
|
||||
FlipIndexSign(ldof_marker[ldof]));
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1672,12 +1676,7 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
|
||||
{
|
||||
for (int j_end = face_nbr_ldof.GetI()[fn+1]; j < j_end; j++)
|
||||
{
|
||||
int ldof = face_nbr_ldof.GetJ()[j];
|
||||
if (ldof < 0)
|
||||
{
|
||||
ldof = -1-ldof;
|
||||
}
|
||||
|
||||
const int ldof = UnsignIndex(face_nbr_ldof.GetJ()[j]);
|
||||
face_nbr_glob_dof_map[j] = dof_face_nbr_offsets[fn] + ldof;
|
||||
}
|
||||
}
|
||||
@@ -1721,7 +1720,7 @@ void ParFiniteElementSpace::GetFaceNbrFaceVDofs(int i, Array<int> &vdofs) const
|
||||
MFEM_ASSERT(Nonconforming() && i >= pmesh->GetNumFaces(), "");
|
||||
int el1, el2, inf1, inf2;
|
||||
pmesh->GetFaceElements(i, &el1, &el2);
|
||||
el2 = -1 - el2;
|
||||
el2 = FlipIndexSign(el2);
|
||||
pmesh->GetFaceInfos(i, &inf1, &inf2);
|
||||
MFEM_ASSERT(0 <= el2 && el2 < face_nbr_element_dof.Size(), "");
|
||||
const int nd = face_nbr_element_dof.RowSize(el2);
|
||||
@@ -1737,7 +1736,8 @@ void ParFiniteElementSpace::GetFaceNbrFaceVDofs(int i, Array<int> &vdofs) const
|
||||
for (int j = 0; j < vdofs.Size(); j++)
|
||||
{
|
||||
const int ldof = vdofs[j];
|
||||
vdofs[j] = (ldof >= 0) ? vol_vdofs[ldof] : -1-vol_vdofs[-1-ldof];
|
||||
vdofs[j] = (ldof >= 0) ? vol_vdofs[ldof] :
|
||||
FlipIndexSign(vol_vdofs[FlipIndexSign(ldof)]);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -2061,8 +2061,8 @@ void ParFiniteElementSpace::GetGhostFaceDofs(const MeshId &face_id,
|
||||
|
||||
for (int j = 0; j < ne; j++)
|
||||
{
|
||||
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j])
|
||||
/* */ : (-1 - (first + (-1 - ind[j])));
|
||||
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j]) :
|
||||
FlipIndexSign(first + FlipIndexSign(ind[j]));
|
||||
}
|
||||
}
|
||||
else
|
||||
@@ -2072,8 +2072,8 @@ void ParFiniteElementSpace::GetGhostFaceDofs(const MeshId &face_id,
|
||||
const int *ind = fec->DofOrderForOrientation(Geometry::SEGMENT, Eo[i]);
|
||||
for (int j = 0; j < ne; j++)
|
||||
{
|
||||
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j])
|
||||
/* */ : (-1 - (first + (-1 - ind[j])));
|
||||
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j]) :
|
||||
FlipIndexSign(first + FlipIndexSign(ind[j]));
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -2866,7 +2866,7 @@ void NeighborRowMessage::Encode(int rank)
|
||||
|
||||
if (ind && (edof = ind[edof]) < 0)
|
||||
{
|
||||
edof = -1 - edof;
|
||||
edof = FlipIndexSign(edof);
|
||||
s = -1;
|
||||
}
|
||||
|
||||
@@ -3067,10 +3067,10 @@ void NeighborRowMessage::Decode(int rank)
|
||||
|
||||
// If edof arrived with a negative index, flip it, and the scaling.
|
||||
real_t s = (edof < 0) ? -1.0 : 1.0;
|
||||
edof = (edof < 0) ? -1 - edof : edof;
|
||||
edof = UnsignIndex(edof);
|
||||
if (ind && (edof = ind[edof]) < 0)
|
||||
{
|
||||
edof = -1 - edof;
|
||||
edof = FlipIndexSign(edof);
|
||||
s *= -1.0;
|
||||
}
|
||||
|
||||
@@ -3121,10 +3121,10 @@ void NeighborRowMessage::Decode(int rank)
|
||||
|
||||
// If edof arrived with a negative index, flip it, and the scaling.
|
||||
s = (edof < 0) ? -1.0 : 1.0;
|
||||
edof = (edof < 0) ? -1 - edof : edof;
|
||||
edof = UnsignIndex(edof);
|
||||
if (ind && (edof = ind[edof]) < 0)
|
||||
{
|
||||
edof = -1 - edof;
|
||||
edof = FlipIndexSign(edof);
|
||||
s *= -1.0;
|
||||
}
|
||||
|
||||
@@ -4405,12 +4405,9 @@ ParFiniteElementSpace::RebalanceMatrix(int old_ndofs,
|
||||
{
|
||||
for (int j = 0; j < dofs.Size(); j++)
|
||||
{
|
||||
int row = DofToVDof(dofs[j], vd);
|
||||
if (row < 0) { row = -1 - row; }
|
||||
|
||||
int col = DofToVDof(old_dofs[j], vd, old_ndofs);
|
||||
if (col < 0) { col = -1 - col; }
|
||||
|
||||
const int row = UnsignIndex(DofToVDof(dofs[j], vd));
|
||||
const int col = UnsignIndex(DofToVDof(old_dofs[j], vd,
|
||||
old_ndofs));
|
||||
i_diag[row] = col;
|
||||
}
|
||||
}
|
||||
@@ -4435,9 +4432,7 @@ ParFiniteElementSpace::RebalanceMatrix(int old_ndofs,
|
||||
{
|
||||
for (int j = 0; j < dofs.Size(); j++)
|
||||
{
|
||||
int row = DofToVDof(dofs[j], vd);
|
||||
if (row < 0) { row = -1 - row; }
|
||||
|
||||
const int row = UnsignIndex(DofToVDof(dofs[j], vd));
|
||||
if (i_diag[row] == i_diag[row+1]) // diag row empty?
|
||||
{
|
||||
i_offd[row] = old_dofs[j + vd * dofs.Size()];
|
||||
@@ -4546,9 +4541,9 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
|
||||
{
|
||||
const Embedding &emb = dtrans.embeddings[k];
|
||||
|
||||
int fine_rank = old_ranks[k];
|
||||
int coarse_rank = (emb.parent < 0) ? (-1 - emb.parent)
|
||||
: old_pncmesh->ElementRank(emb.parent);
|
||||
const int fine_rank = old_ranks[k];
|
||||
const int coarse_rank = (emb.parent < 0) ? FlipIndexSign(emb.parent)
|
||||
: old_pncmesh->ElementRank(emb.parent);
|
||||
|
||||
if (coarse_rank != MyRank && fine_rank == MyRank)
|
||||
{
|
||||
@@ -4636,8 +4631,8 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
|
||||
{
|
||||
if (!std::isfinite(lR(i, 0))) { continue; }
|
||||
|
||||
int r = DofToVDof(dofs[i], vd);
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
const int r = DofToVDof(dofs[i], vd);
|
||||
const int m = UnsignIndex(r);
|
||||
|
||||
if (is_dg || !mark[m])
|
||||
{
|
||||
@@ -4686,8 +4681,7 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
|
||||
{
|
||||
if (!std::isfinite(lR(i, 0))) { continue; }
|
||||
|
||||
int r = DofToVDof(dofs[i], vd);
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
const int m = UnsignIndex(DofToVDof(dofs[i], vd));
|
||||
|
||||
if (is_dg || !mark[m])
|
||||
{
|
||||
|
||||
+15
-1
@@ -545,6 +545,8 @@ void ParGridFunction::GetElementDofValues(int el, Vector &dof_vals) const
|
||||
|
||||
void ParGridFunction::ProjectCoefficient(Coefficient &coeff, ProjectType type)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == 1,
|
||||
"Cannot project scalar coefficient onto vector ParGridFunction");
|
||||
DeltaCoefficient *delta_c = dynamic_cast<DeltaCoefficient *>(&coeff);
|
||||
|
||||
if (delta_c == NULL)
|
||||
@@ -715,7 +717,8 @@ void ParGridFunction::ProjectCoefficientElementL2(VectorCoefficient &vcoeff)
|
||||
}
|
||||
|
||||
|
||||
void ParGridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff)
|
||||
void ParGridFunction::ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff)
|
||||
{
|
||||
// local maximal element attribute for each dof
|
||||
Array<int> ldof_attr;
|
||||
@@ -761,6 +764,9 @@ void ParGridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff)
|
||||
|
||||
void ParGridFunction::ProjectDiscCoefficient(Coefficient &coeff, AvgType type)
|
||||
{
|
||||
MFEM_VERIFY(
|
||||
VectorDim() == 1,
|
||||
"Cannot project scalar coefficient onto a vector ParGridFunction");
|
||||
// Harmonic (x1 ... xn) = [ (1/x1 + ... + 1/xn) / n ]^-1.
|
||||
// Arithmetic(x1 ... xn) = (x1 + ... + xn) / n.
|
||||
|
||||
@@ -786,6 +792,8 @@ void ParGridFunction::ProjectDiscCoefficient(VectorCoefficient &vcoeff,
|
||||
// Harmonic (x1 ... xn) = [ (1/x1 + ... + 1/xn) / n ]^-1.
|
||||
// Arithmetic(x1 ... xn) = (x1 + ... + xn) / n.
|
||||
|
||||
MFEM_VERIFY(VectorDim() == vcoeff.GetVDim(), "vcoeff vdim != VectorDim()");
|
||||
|
||||
// Number of zones that contain a given dof.
|
||||
Array<int> zones_per_vdof;
|
||||
AccumulateAndCountZones(vcoeff, type, zones_per_vdof);
|
||||
@@ -858,6 +866,12 @@ void ParGridFunction::ProjectBdrCoefficient(
|
||||
#endif
|
||||
}
|
||||
|
||||
void ParGridFunction::ProjectBdrCoefficient(VectorCoefficient &vcoeff,
|
||||
const Array<int> &attr)
|
||||
{
|
||||
ProjectBdrCoefficient(NULL, &vcoeff, attr);
|
||||
}
|
||||
|
||||
void ParGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient &vcoeff,
|
||||
const Array<int> &bdr_attr)
|
||||
{
|
||||
|
||||
+7
-7
@@ -63,6 +63,12 @@ protected:
|
||||
void ProjectBdrCoefficient(Coefficient *coeff[], VectorCoefficient *vcoeff,
|
||||
const Array<int> &attr);
|
||||
|
||||
/** @brief Project a discontinuous (vector) coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
virtual void ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff) override;
|
||||
|
||||
public:
|
||||
ParGridFunction() { pfes = NULL; }
|
||||
|
||||
@@ -268,11 +274,6 @@ public:
|
||||
ProjectType type = ProjectType::DEFAULT) override;
|
||||
|
||||
using GridFunction::ProjectDiscCoefficient;
|
||||
/** @brief Project a discontinuous vector coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
void ProjectDiscCoefficient(VectorCoefficient &coeff) override;
|
||||
|
||||
void ProjectDiscCoefficient(Coefficient &coeff, AvgType type) override;
|
||||
|
||||
void ProjectDiscCoefficient(VectorCoefficient &vcoeff, AvgType type) override;
|
||||
@@ -280,8 +281,7 @@ public:
|
||||
using GridFunction::ProjectBdrCoefficient;
|
||||
|
||||
void ProjectBdrCoefficient(VectorCoefficient &vcoeff,
|
||||
const Array<int> &attr) override
|
||||
{ ProjectBdrCoefficient(NULL, &vcoeff, attr); }
|
||||
const Array<int> &attr) override;
|
||||
|
||||
void ProjectBdrCoefficient(Coefficient *coeff[],
|
||||
const Array<int> &attr) override
|
||||
|
||||
+11
-5
@@ -321,12 +321,17 @@ void ParL2FaceRestriction::DoubleValuedConformingMult(
|
||||
const int vd = vdim;
|
||||
const bool t = byvdim;
|
||||
const int threshold = ndofs;
|
||||
const int nsdofs = pfes.GetFaceNbrVSize();
|
||||
const int nsdofs = pfes.GetFaceNbrVSize() / vd;
|
||||
auto d_indices1 = scatter_indices1.Read();
|
||||
auto d_indices2 = scatter_indices2.Read();
|
||||
auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
|
||||
auto d_x_shared = Reshape(face_nbr_data.Read(),
|
||||
t?vd:nsdofs, t?nsdofs:vd);
|
||||
const int ne_shared = nsdofs / elem_dofs;
|
||||
const int nedof = elem_dofs;
|
||||
// Note: the shape of face_nbr_data, as determined by
|
||||
// ParFiniteElementSpace::ExchangeFaceNbrData, is (elem_dofs, vdim,
|
||||
// ne_shared), independent of the ordering (byNODES or byVDIM) of the finite
|
||||
// element space.
|
||||
auto d_x_shared = Reshape(face_nbr_data.Read(), elem_dofs, vd, ne_shared);
|
||||
auto d_y = Reshape(y.Write(), nface_dofs, vd, 2, nf);
|
||||
mfem::forall(nfdofs, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
@@ -346,8 +351,9 @@ void ParL2FaceRestriction::DoubleValuedConformingMult(
|
||||
}
|
||||
else if (idx2>=threshold) // shared boundary
|
||||
{
|
||||
d_y(dof, c, 1, face) = d_x_shared(t?c:(idx2-threshold),
|
||||
t?(idx2-threshold):c);
|
||||
const int e_shared = (idx2 - threshold) / nedof;
|
||||
const int i_shared = (idx2 - threshold) % nedof;
|
||||
d_y(dof, c, 1, face) = d_x_shared(i_shared,c,e_shared);
|
||||
}
|
||||
else // true boundary
|
||||
{
|
||||
|
||||
+1
-4
@@ -271,10 +271,7 @@ inline void QuadratureFunction::GetValues(
|
||||
const int s_offset = qspace->Offset(idx);
|
||||
const int sl_size = qspace->Offset(idx + 1) - s_offset;
|
||||
// Make the values matrix memory an alias of the quadrature function memory
|
||||
Memory<real_t> &values_mem = values.GetMemory();
|
||||
values_mem.Delete();
|
||||
values_mem.MakeAlias(GetMemory(), vdim*s_offset, vdim*sl_size);
|
||||
values.SetSize(vdim, sl_size);
|
||||
values.MakeRef(GetMemory(), vdim*s_offset, vdim, sl_size);
|
||||
}
|
||||
|
||||
inline void QuadratureFunction::GetValues(
|
||||
|
||||
@@ -0,0 +1,44 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "eval_transpose.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// @cond Suppress_Doxygen_warnings
|
||||
|
||||
QuadratureInterpolator::TensorEvalTransposeKernelType
|
||||
QuadratureInterpolator::TensorEvalTransposeKernels::Fallback(
|
||||
int DIM, QVectorLayout Q_LAYOUT, int, int, int)
|
||||
{
|
||||
using namespace internal::quadrature_interpolator;
|
||||
|
||||
if (Q_LAYOUT == QVectorLayout::byNODES)
|
||||
{
|
||||
if (DIM == 1) { return ValuesTranspose1D<QVectorLayout::byNODES>; }
|
||||
else if (DIM == 2) { return ValuesTranspose2D<QVectorLayout::byNODES>; }
|
||||
else if (DIM == 3) { return ValuesTranspose3D<QVectorLayout::byNODES>; }
|
||||
}
|
||||
else
|
||||
{
|
||||
if (DIM == 1) { return ValuesTranspose1D<QVectorLayout::byVDIM>; }
|
||||
else if (DIM == 2) { return ValuesTranspose2D<QVectorLayout::byVDIM>; }
|
||||
else if (DIM == 3) { return ValuesTranspose3D<QVectorLayout::byVDIM>; }
|
||||
}
|
||||
MFEM_ABORT("Invalid dimension");
|
||||
return nullptr;
|
||||
}
|
||||
|
||||
/// @endcond
|
||||
|
||||
} // namespace mfem
|
||||
@@ -0,0 +1,300 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#pragma once
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../../linalg/dtensor.hpp"
|
||||
#include "../../linalg/kernels.hpp"
|
||||
#include "../kernels.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
namespace internal
|
||||
{
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
template<QVectorLayout Q_LAYOUT>
|
||||
static void ValuesTranspose1D(const int NE,
|
||||
const real_t *b_,
|
||||
const real_t *q_,
|
||||
real_t *e_,
|
||||
const int vdim,
|
||||
const int d1d,
|
||||
const int q1d)
|
||||
{
|
||||
const auto b = Reshape(b_, q1d, d1d);
|
||||
const auto qd = Q_LAYOUT == QVectorLayout::byNODES ?
|
||||
Reshape(q_, q1d, vdim, NE) :
|
||||
Reshape(q_, vdim, q1d, NE);
|
||||
auto e = Reshape(e_, d1d, vdim, NE);
|
||||
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int el)
|
||||
{
|
||||
for (int c = 0; c < vdim; c++)
|
||||
{
|
||||
for (int d = 0; d < d1d; d++)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int q = 0; q < q1d; q++)
|
||||
{
|
||||
const real_t qval = Q_LAYOUT == QVectorLayout::byVDIM ?
|
||||
qd(c, q, el) : qd(q, c, el);
|
||||
u += b(q, d) * qval;
|
||||
}
|
||||
e(d, c, el) += u;
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<QVectorLayout Q_LAYOUT,
|
||||
int T_VDIM = 0, int T_D1D = 0, int T_Q1D = 0,
|
||||
int T_NBZ = 1>
|
||||
static void ValuesTranspose2D(const int NE,
|
||||
const real_t *b_,
|
||||
const real_t *q_,
|
||||
real_t *e_,
|
||||
const int vdim = 0,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
static constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
|
||||
const auto b = Reshape(b_, Q1D, D1D);
|
||||
const auto q = Q_LAYOUT == QVectorLayout::byNODES ?
|
||||
Reshape(q_, Q1D, Q1D, VDIM, NE) :
|
||||
Reshape(q_, VDIM, Q1D, Q1D, NE);
|
||||
auto e = Reshape(e_, D1D, D1D, VDIM, NE);
|
||||
|
||||
mfem::forall_2D_batch(NE, D1D, D1D, NBZ, [=] MFEM_HOST_DEVICE (int el)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
|
||||
MFEM_SHARED real_t sB[MQ1*MD1];
|
||||
MFEM_SHARED real_t sm0[NBZ][MDQ*MDQ];
|
||||
MFEM_SHARED real_t sm1[NBZ][MDQ*MDQ];
|
||||
|
||||
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,b,sB);
|
||||
|
||||
ConstDeviceMatrix B(sB, D1D, Q1D);
|
||||
DeviceMatrix QQ(sm0[tidz], MQ1, MQ1);
|
||||
DeviceMatrix DQ(sm1[tidz], MD1, MQ1);
|
||||
DeviceMatrix DD(sm0[tidz], MD1, MD1);
|
||||
|
||||
for (int c = 0; c < VDIM; c++)
|
||||
{
|
||||
// Load Q data
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
QQ(qx,qy) = Q_LAYOUT == QVectorLayout::byVDIM ?
|
||||
q(c,qx,qy,el) : q(qx,qy,c,el);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Transpose in y: QQ -> DQ (apply B^T in y-direction)
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
u += B(dy,qy) * QQ(qx,qy);
|
||||
}
|
||||
DQ(dy,qx) = u;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Transpose in x: DQ -> DD (apply B^T in x-direction)
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
u += B(dx,qx) * DQ(dy,qx);
|
||||
}
|
||||
DD(dx,dy) = u;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Store result
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
e(dx,dy,c,el) += DD(dx,dy);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<QVectorLayout Q_LAYOUT,
|
||||
int T_VDIM = 0, int T_D1D = 0, int T_Q1D = 0>
|
||||
static void ValuesTranspose3D(const int NE,
|
||||
const real_t *b_,
|
||||
const real_t *q_,
|
||||
real_t *e_,
|
||||
const int vdim = 0,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
|
||||
const auto b = Reshape(b_, Q1D, D1D);
|
||||
const auto q = Q_LAYOUT == QVectorLayout::byNODES ?
|
||||
Reshape(q_, Q1D, Q1D, Q1D, VDIM, NE) :
|
||||
Reshape(q_, VDIM, Q1D, Q1D, Q1D, NE);
|
||||
auto e = Reshape(e_, D1D, D1D, D1D, VDIM, NE);
|
||||
|
||||
mfem::forall_3D(NE, D1D, D1D, D1D, [=] MFEM_HOST_DEVICE (int el)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_INTERP_1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_INTERP_1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
|
||||
MFEM_SHARED real_t sB[MQ1*MD1];
|
||||
MFEM_SHARED real_t sm0[MDQ*MDQ*MDQ];
|
||||
MFEM_SHARED real_t sm1[MDQ*MDQ*MDQ];
|
||||
|
||||
kernels::internal::LoadB<MD1,MQ1>(D1D,Q1D,b,sB);
|
||||
|
||||
ConstDeviceMatrix B(sB, D1D, Q1D);
|
||||
DeviceCube QQQ(sm0, MQ1, MQ1, MQ1);
|
||||
DeviceCube DQQ(sm1, MD1, MQ1, MQ1);
|
||||
DeviceCube DDQ(sm0, MD1, MD1, MQ1);
|
||||
DeviceCube DDD(sm1, MD1, MD1, MD1);
|
||||
|
||||
for (int c = 0; c < VDIM; c++)
|
||||
{
|
||||
// Load Q data
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
QQQ(qx,qy,qz) = Q_LAYOUT == QVectorLayout::byVDIM ?
|
||||
q(c,qx,qy,qz,el) : q(qx,qy,qz,c,el);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Transpose in z
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u += B(dz,qz) * QQQ(qx,qy,qz);
|
||||
}
|
||||
DQQ(dz,qx,qy) = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Transpose in y
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
u += B(dy,qy) * DQQ(dz,qx,qy);
|
||||
}
|
||||
DDQ(dz,dy,qx) = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Transpose in x
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
u += B(dx,qx) * DDQ(dz,dy,qx);
|
||||
}
|
||||
DDD(dx,dy,dz) = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
e(dx,dy,dz,c,el) += DDD(dx,dy,dz);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
} // namespace internal
|
||||
|
||||
template<int DIM, QVectorLayout Q_LAYOUT,
|
||||
int VDIM, int D1D, int Q1D, int NBZ>
|
||||
QuadratureInterpolator::TensorEvalTransposeKernelType
|
||||
QuadratureInterpolator::TensorEvalTransposeKernels::Kernel()
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::ValuesTranspose1D<Q_LAYOUT>; }
|
||||
else if (DIM == 2) { return internal::quadrature_interpolator::ValuesTranspose2D<Q_LAYOUT, VDIM, D1D, Q1D, NBZ>; }
|
||||
else if (DIM == 3) { return internal::quadrature_interpolator::ValuesTranspose3D<Q_LAYOUT, VDIM, D1D, Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
@@ -0,0 +1,61 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "eval_transpose.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
namespace internal
|
||||
{
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
void InitEvalTransposeByVDimKernels()
|
||||
{
|
||||
using k = QuadratureInterpolator::TensorEvalTransposeKernels;
|
||||
constexpr auto L = QVectorLayout::byVDIM;
|
||||
|
||||
// 2D
|
||||
k::Specialization<2,L,1,2,4>::Opt<8>::Add();
|
||||
k::Specialization<2,L,1,3,6>::Opt<4>::Add();
|
||||
k::Specialization<2,L,1,4,8>::Opt<2>::Add();
|
||||
|
||||
k::Specialization<2,L,2,2,4>::Opt<8>::Add();
|
||||
k::Specialization<2,L,2,3,4>::Opt<8>::Add();
|
||||
k::Specialization<2,L,2,3,6>::Opt<4>::Add();
|
||||
k::Specialization<2,L,2,4,6>::Opt<2>::Add();
|
||||
k::Specialization<2,L,2,4,8>::Opt<2>::Add();
|
||||
|
||||
// 3D
|
||||
k::Specialization<3,L,1,2,4>::Opt<1>::Add();
|
||||
k::Specialization<3,L,1,3,6>::Opt<1>::Add();
|
||||
k::Specialization<3,L,1,4,8>::Opt<1>::Add();
|
||||
k::Specialization<3,L,3,2,4>::Opt<1>::Add();
|
||||
k::Specialization<3,L,3,3,6>::Opt<1>::Add();
|
||||
k::Specialization<3,L,3,4,8>::Opt<1>::Add();
|
||||
|
||||
k::Specialization<3,L,3,2,2>::Opt<1>::Add();
|
||||
k::Specialization<3,L,3,3,3>::Opt<1>::Add();
|
||||
k::Specialization<3,L,3,4,4>::Opt<1>::Add();
|
||||
k::Specialization<3,L,3,5,5>::Opt<1>::Add();
|
||||
k::Specialization<3,L,3,6,6>::Opt<1>::Add();
|
||||
k::Specialization<3,L,3,7,7>::Opt<1>::Add();
|
||||
k::Specialization<3,L,3,8,8>::Opt<1>::Add();
|
||||
k::Specialization<3,L,3,9,9>::Opt<1>::Add();
|
||||
|
||||
k::Specialization<3,L,3,4,6>::Opt<1>::Add();
|
||||
k::Specialization<3,L,3,3,4>::Opt<1>::Add();
|
||||
}
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
} // namespace internal
|
||||
} // namespace mfem
|
||||
@@ -0,0 +1,62 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "grad_transpose.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// @cond Suppress_Doxygen_warnings
|
||||
|
||||
QuadratureInterpolator::GradTransposeKernelType
|
||||
QuadratureInterpolator::GradTransposeKernels::Fallback(
|
||||
int DIM, QVectorLayout Q_LAYOUT, bool GRAD_PHYS, int, int, int)
|
||||
{
|
||||
using namespace internal::quadrature_interpolator;
|
||||
|
||||
if (Q_LAYOUT == QVectorLayout::byNODES)
|
||||
{
|
||||
if (GRAD_PHYS)
|
||||
{
|
||||
if (DIM == 1) { return DerivativesTranspose1D<QVectorLayout::byNODES, true>; }
|
||||
else if (DIM == 2) { return DerivativesTranspose2D<QVectorLayout::byNODES, true>; }
|
||||
else if (DIM == 3) { return DerivativesTranspose3D<QVectorLayout::byNODES, true>; }
|
||||
}
|
||||
else
|
||||
{
|
||||
if (DIM == 1) { return DerivativesTranspose1D<QVectorLayout::byNODES, false>; }
|
||||
else if (DIM == 2) { return DerivativesTranspose2D<QVectorLayout::byNODES, false>; }
|
||||
else if (DIM == 3) { return DerivativesTranspose3D<QVectorLayout::byNODES, false>; }
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
if (GRAD_PHYS)
|
||||
{
|
||||
if (DIM == 1) { return DerivativesTranspose1D<QVectorLayout::byVDIM, true>; }
|
||||
else if (DIM == 2) { return DerivativesTranspose2D<QVectorLayout::byVDIM, true>; }
|
||||
else if (DIM == 3) { return DerivativesTranspose3D<QVectorLayout::byVDIM, true>; }
|
||||
}
|
||||
else
|
||||
{
|
||||
if (DIM == 1) { return DerivativesTranspose1D<QVectorLayout::byVDIM, false>; }
|
||||
else if (DIM == 2) { return DerivativesTranspose2D<QVectorLayout::byVDIM, false>; }
|
||||
else if (DIM == 3) { return DerivativesTranspose3D<QVectorLayout::byVDIM, false>; }
|
||||
}
|
||||
}
|
||||
MFEM_ABORT("Invalid dimension");
|
||||
return nullptr;
|
||||
}
|
||||
|
||||
/// @endcond
|
||||
|
||||
} // namespace mfem
|
||||
@@ -0,0 +1,737 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#pragma once
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../../linalg/dtensor.hpp"
|
||||
#include "../../linalg/kernels.hpp"
|
||||
#include "../kernels.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
namespace internal
|
||||
{
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
// Transpose gradient operation: integrate against shape function derivatives
|
||||
// This is the adjoint of the Derivatives operation
|
||||
|
||||
template<QVectorLayout Q_LAYOUT, bool GRAD_PHYS>
|
||||
static void DerivativesTranspose1D(const int NE,
|
||||
const real_t *b_,
|
||||
const real_t *g_,
|
||||
const real_t *j_,
|
||||
const real_t *q_,
|
||||
real_t *e_,
|
||||
const int sdim,
|
||||
const int vdim,
|
||||
const int d1d,
|
||||
const int q1d)
|
||||
{
|
||||
MFEM_CONTRACT_VAR(b_);
|
||||
const int SDIM = GRAD_PHYS ? sdim : 1;
|
||||
const auto g = Reshape(g_, q1d, d1d);
|
||||
const auto j = Reshape(j_, q1d, SDIM, NE);
|
||||
const auto q = Q_LAYOUT == QVectorLayout::byNODES ?
|
||||
Reshape(q_, q1d, vdim, SDIM, NE):
|
||||
Reshape(q_, vdim, SDIM, q1d, NE);
|
||||
auto e = Reshape(e_, d1d, vdim, NE);
|
||||
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int el)
|
||||
{
|
||||
for (int c = 0; c < vdim; c++)
|
||||
{
|
||||
for (int d = 0; d < d1d; d++)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qx = 0; qx < q1d; qx++)
|
||||
{
|
||||
// Load gradient from q-vector
|
||||
real_t dq[3] = {0.0, 0.0, 0.0};
|
||||
for (int s = 0; s < SDIM; ++s)
|
||||
{
|
||||
if (Q_LAYOUT == QVectorLayout::byVDIM) { dq[s] = q(c, s, qx, el); }
|
||||
if (Q_LAYOUT == QVectorLayout::byNODES) { dq[s] = q(qx, c, s, el); }
|
||||
}
|
||||
|
||||
// Apply inverse Jacobian transpose (adjoint of physical gradient)
|
||||
real_t du = dq[0];
|
||||
if (GRAD_PHYS)
|
||||
{
|
||||
if (SDIM == 1) { du = dq[0] / j(qx, 0, el); }
|
||||
else if (SDIM == 2)
|
||||
{
|
||||
const real_t Jloc[2] = {j(qx,0,el), j(qx,1,el)};
|
||||
real_t Jinv[3];
|
||||
kernels::CalcLeftInverse<2,1>(Jloc, Jinv);
|
||||
du = Jinv[0]*dq[0] + Jinv[1]*dq[1];
|
||||
}
|
||||
else // SDIM == 3
|
||||
{
|
||||
const real_t Jloc[3] = {j(qx,0,el), j(qx,1,el), j(qx,2,el)};
|
||||
real_t Jinv[3];
|
||||
kernels::CalcLeftInverse<3,1>(Jloc, Jinv);
|
||||
du = Jinv[0]*dq[0] + Jinv[1]*dq[1] + Jinv[2]*dq[2];
|
||||
}
|
||||
}
|
||||
|
||||
// Accumulate contribution (transpose of G matrix)
|
||||
u += g(qx, d) * du;
|
||||
}
|
||||
e(d, c, el) += u;
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<QVectorLayout Q_LAYOUT, bool GRAD_PHYS,
|
||||
int T_VDIM = 0, int T_D1D = 0, int T_Q1D = 0,
|
||||
int T_NBZ = 1>
|
||||
static void DerivativesTranspose2D(const int NE,
|
||||
const real_t *b_,
|
||||
const real_t *g_,
|
||||
const real_t *j_,
|
||||
const real_t *q_,
|
||||
real_t *e_,
|
||||
const int sdim = 2,
|
||||
const int vdim = 0,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
const int SDIM = GRAD_PHYS ? sdim : 2;
|
||||
static constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
|
||||
const auto b = Reshape(b_, Q1D, D1D);
|
||||
const auto g = Reshape(g_, Q1D, D1D);
|
||||
const auto j = Reshape(j_, Q1D, Q1D, SDIM, 2, NE);
|
||||
const auto q = Q_LAYOUT == QVectorLayout::byNODES ?
|
||||
Reshape(q_, Q1D, Q1D, VDIM, SDIM, NE):
|
||||
Reshape(q_, VDIM, SDIM, Q1D, Q1D, NE);
|
||||
auto e = Reshape(e_, D1D, D1D, VDIM, NE);
|
||||
|
||||
mfem::forall_2D_batch(NE, D1D, D1D, NBZ, [=] MFEM_HOST_DEVICE (int el)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
|
||||
MFEM_SHARED real_t BG[2][MQ1*MD1];
|
||||
kernels::internal::LoadBG<MD1,MQ1>(D1D,Q1D,b,g,BG);
|
||||
DeviceMatrix B(BG[0], D1D, Q1D);
|
||||
DeviceMatrix G(BG[1], D1D, Q1D);
|
||||
|
||||
MFEM_SHARED real_t sm0[NBZ][MDQ*MDQ];
|
||||
MFEM_SHARED real_t sm1[NBZ][MDQ*MDQ];
|
||||
|
||||
DeviceMatrix QQ(sm0[tidz], MQ1, MQ1);
|
||||
DeviceMatrix DQ0(sm1[tidz], MD1, MQ1);
|
||||
DeviceMatrix DQ1(sm1[tidz], MD1, MQ1); // Reuse sm1 after DQ0 is done
|
||||
DeviceMatrix DD(sm0[tidz], MD1, MD1); // Reuse sm0 after QQ is done
|
||||
|
||||
for (int c = 0; c < VDIM; c++)
|
||||
{
|
||||
// Load Q data and apply inverse Jacobian
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
// Load gradient components
|
||||
real_t dq[3] = {0.0, 0.0, 0.0};
|
||||
for (int d = 0; d < SDIM; ++d)
|
||||
{
|
||||
if (Q_LAYOUT == QVectorLayout::byVDIM) { dq[d] = q(c, d, qx, qy, el); }
|
||||
else { dq[d] = q(qx, qy, c, d, el); }
|
||||
}
|
||||
|
||||
// Apply inverse Jacobian transpose (adjoint of physical gradient)
|
||||
real_t du[2] = {dq[0], dq[1]};
|
||||
if (GRAD_PHYS)
|
||||
{
|
||||
if (SDIM == 2)
|
||||
{
|
||||
real_t Jloc[4], Jinv[4];
|
||||
Jloc[0] = j(qx,qy,0,0,el);
|
||||
Jloc[1] = j(qx,qy,1,0,el);
|
||||
Jloc[2] = j(qx,qy,0,1,el);
|
||||
Jloc[3] = j(qx,qy,1,1,el);
|
||||
kernels::CalcInverse<2>(Jloc, Jinv);
|
||||
const real_t U = Jinv[0]*dq[0] + Jinv[2]*dq[1];
|
||||
const real_t V = Jinv[1]*dq[0] + Jinv[3]*dq[1];
|
||||
du[0] = U;
|
||||
du[1] = V;
|
||||
}
|
||||
else // SDIM == 3
|
||||
{
|
||||
real_t Jloc[6], Jinv[6];
|
||||
Jloc[0] = j(qx,qy,0,0,el);
|
||||
Jloc[1] = j(qx,qy,1,0,el);
|
||||
Jloc[2] = j(qx,qy,2,0,el);
|
||||
Jloc[3] = j(qx,qy,0,1,el);
|
||||
Jloc[4] = j(qx,qy,1,1,el);
|
||||
Jloc[5] = j(qx,qy,2,1,el);
|
||||
kernels::CalcLeftInverse<3,2>(Jloc, Jinv);
|
||||
const real_t U = Jinv[0]*dq[0] + Jinv[2]*dq[1] + Jinv[4]*dq[2];
|
||||
const real_t V = Jinv[1]*dq[0] + Jinv[3]*dq[1] + Jinv[5]*dq[2];
|
||||
du[0] = U;
|
||||
du[1] = V;
|
||||
}
|
||||
}
|
||||
QQ(qx, qy) = du[0]; // Store du/dx component
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Apply B^T in y-direction: QQ -> DQ0
|
||||
// (Transpose of d/dx which uses DQ1(dy,qx)*B(dy,qy))
|
||||
// Must produce DQ0(dy,qx) to match forward's DQ1 indexing
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
u += B(dy,qy) * QQ(qx,qy);
|
||||
}
|
||||
DQ0(dy,qx) = u;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Apply G^T in x-direction: DQ0 -> DD
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
u += G(dx,qx) * DQ0(dy,qx);
|
||||
}
|
||||
DD(dx,dy) = u;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Accumulate to output
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
e(dx,dy,c,el) += DD(dx,dy);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Now process du/dy component
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
// Load gradient components
|
||||
real_t dq[3] = {0.0, 0.0, 0.0};
|
||||
for (int d = 0; d < SDIM; ++d)
|
||||
{
|
||||
if (Q_LAYOUT == QVectorLayout::byVDIM) { dq[d] = q(c, d, qx, qy, el); }
|
||||
else { dq[d] = q(qx, qy, c, d, el); }
|
||||
}
|
||||
|
||||
// Apply inverse Jacobian transpose
|
||||
real_t du[2] = {dq[0], dq[1]};
|
||||
if (GRAD_PHYS)
|
||||
{
|
||||
if (SDIM == 2)
|
||||
{
|
||||
real_t Jloc[4], Jinv[4];
|
||||
Jloc[0] = j(qx,qy,0,0,el);
|
||||
Jloc[1] = j(qx,qy,1,0,el);
|
||||
Jloc[2] = j(qx,qy,0,1,el);
|
||||
Jloc[3] = j(qx,qy,1,1,el);
|
||||
kernels::CalcInverse<2>(Jloc, Jinv);
|
||||
const real_t U = Jinv[0]*dq[0] + Jinv[2]*dq[1];
|
||||
const real_t V = Jinv[1]*dq[0] + Jinv[3]*dq[1];
|
||||
du[0] = U;
|
||||
du[1] = V;
|
||||
}
|
||||
else // SDIM == 3
|
||||
{
|
||||
real_t Jloc[6], Jinv[6];
|
||||
Jloc[0] = j(qx,qy,0,0,el);
|
||||
Jloc[1] = j(qx,qy,1,0,el);
|
||||
Jloc[2] = j(qx,qy,2,0,el);
|
||||
Jloc[3] = j(qx,qy,0,1,el);
|
||||
Jloc[4] = j(qx,qy,1,1,el);
|
||||
Jloc[5] = j(qx,qy,2,1,el);
|
||||
kernels::CalcLeftInverse<3,2>(Jloc, Jinv);
|
||||
const real_t U = Jinv[0]*dq[0] + Jinv[2]*dq[1] + Jinv[4]*dq[2];
|
||||
const real_t V = Jinv[1]*dq[0] + Jinv[3]*dq[1] + Jinv[5]*dq[2];
|
||||
du[0] = U;
|
||||
du[1] = V;
|
||||
}
|
||||
}
|
||||
QQ(qx, qy) = du[1]; // Store du/dy component
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Apply G^T in y-direction: QQ -> DQ1
|
||||
// (Transpose of d/dy which uses DQ0(dy,qx)*G(dy,qy))
|
||||
// Must produce DQ1(dy,qx) to match forward's DQ0 indexing
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
u += G(dy,qy) * QQ(qx,qy);
|
||||
}
|
||||
DQ1(dy,qx) = u;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Apply B^T in x-direction: DQ1 -> DD
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
u += B(dx,qx) * DQ1(dy,qx);
|
||||
}
|
||||
DD(dx,dy) = u;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Accumulate to output
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
e(dx,dy,c,el) += DD(dx,dy);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<QVectorLayout Q_LAYOUT, bool GRAD_PHYS,
|
||||
int T_VDIM = 0, int T_D1D = 0, int T_Q1D = 0>
|
||||
static void DerivativesTranspose3D(const int NE,
|
||||
const real_t *b_,
|
||||
const real_t *g_,
|
||||
const real_t *j_,
|
||||
const real_t *q_,
|
||||
real_t *e_,
|
||||
const int sdim = 3,
|
||||
const int vdim = 0,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
|
||||
const auto b = Reshape(b_, Q1D, D1D);
|
||||
const auto g = Reshape(g_, Q1D, D1D);
|
||||
const auto j = Reshape(j_, Q1D, Q1D, Q1D, 3, 3, NE);
|
||||
const auto q = Q_LAYOUT == QVectorLayout::byNODES ?
|
||||
Reshape(q_, Q1D, Q1D, Q1D, VDIM, 3, NE):
|
||||
Reshape(q_, VDIM, 3, Q1D, Q1D, Q1D, NE);
|
||||
auto e = Reshape(e_, D1D, D1D, D1D, VDIM, NE);
|
||||
|
||||
mfem::forall_3D(NE, Q1D, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int el)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_INTERP_1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_INTERP_1D;
|
||||
|
||||
MFEM_SHARED real_t BG[2][MQ1*MD1];
|
||||
kernels::internal::LoadBG<MD1,MQ1>(D1D,Q1D,b,g,BG);
|
||||
DeviceMatrix B(BG[0], D1D, Q1D);
|
||||
DeviceMatrix G(BG[1], D1D, Q1D);
|
||||
|
||||
MFEM_SHARED real_t sm0[3][MQ1*MQ1*MQ1];
|
||||
MFEM_SHARED real_t sm1[3][MQ1*MQ1*MQ1];
|
||||
DeviceCube QQQ(sm0[0], MQ1, MQ1, MQ1);
|
||||
DeviceCube DQQ(sm1[0], MD1, MQ1, MQ1);
|
||||
DeviceCube DDQ(sm0[0], MD1, MD1, MQ1);
|
||||
DeviceCube DDD(sm1[0], MD1, MD1, MD1);
|
||||
|
||||
for (int c = 0; c < VDIM; c++)
|
||||
{
|
||||
// Process du/dx component
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t dq[3];
|
||||
if (Q_LAYOUT == QVectorLayout::byVDIM)
|
||||
{
|
||||
dq[0] = q(c,0,qx,qy,qz,el);
|
||||
dq[1] = q(c,1,qx,qy,qz,el);
|
||||
dq[2] = q(c,2,qx,qy,qz,el);
|
||||
}
|
||||
else
|
||||
{
|
||||
dq[0] = q(qx,qy,qz,c,0,el);
|
||||
dq[1] = q(qx,qy,qz,c,1,el);
|
||||
dq[2] = q(qx,qy,qz,c,2,el);
|
||||
}
|
||||
|
||||
real_t du[3] = {dq[0], dq[1], dq[2]};
|
||||
if (GRAD_PHYS)
|
||||
{
|
||||
real_t Jloc[9], Jinv[9];
|
||||
for (int col = 0; col < 3; col++)
|
||||
{
|
||||
for (int row = 0; row < 3; row++)
|
||||
{
|
||||
Jloc[row+3*col] = j(qx,qy,qz,row,col,el);
|
||||
}
|
||||
}
|
||||
kernels::CalcInverse<3>(Jloc, Jinv);
|
||||
const real_t U = Jinv[0]*dq[0] + Jinv[3]*dq[1] + Jinv[6]*dq[2];
|
||||
const real_t V = Jinv[1]*dq[0] + Jinv[4]*dq[1] + Jinv[7]*dq[2];
|
||||
const real_t W = Jinv[2]*dq[0] + Jinv[5]*dq[1] + Jinv[8]*dq[2];
|
||||
du[0] = U; du[1] = V; du[2] = W;
|
||||
}
|
||||
QQQ(qx,qy,qz) = du[0];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Apply G^T in x: QQQ -> DQQ (transpose of G⊗B⊗B)
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
u += G(dx,qx) * QQQ(qx,qy,qz);
|
||||
}
|
||||
DQQ(dx,qy,qz) = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Apply B^T in y: DQQ -> DDQ
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
u += B(dy,qy) * DQQ(dx,qy,qz);
|
||||
}
|
||||
DDQ(dx,dy,qz) = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Apply B^T in z: DDQ -> DDD
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u += B(dz,qz) * DDQ(dx,dy,qz);
|
||||
}
|
||||
DDD(dx,dy,dz) = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Accumulate result
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
e(dx,dy,dz,c,el) += DDD(dx,dy,dz);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Process du/dy component
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t dq[3];
|
||||
if (Q_LAYOUT == QVectorLayout::byVDIM)
|
||||
{
|
||||
dq[0] = q(c,0,qx,qy,qz,el);
|
||||
dq[1] = q(c,1,qx,qy,qz,el);
|
||||
dq[2] = q(c,2,qx,qy,qz,el);
|
||||
}
|
||||
else
|
||||
{
|
||||
dq[0] = q(qx,qy,qz,c,0,el);
|
||||
dq[1] = q(qx,qy,qz,c,1,el);
|
||||
dq[2] = q(qx,qy,qz,c,2,el);
|
||||
}
|
||||
|
||||
real_t du[3] = {dq[0], dq[1], dq[2]};
|
||||
if (GRAD_PHYS)
|
||||
{
|
||||
real_t Jloc[9], Jinv[9];
|
||||
for (int col = 0; col < 3; col++)
|
||||
{
|
||||
for (int row = 0; row < 3; row++)
|
||||
{
|
||||
Jloc[row+3*col] = j(qx,qy,qz,row,col,el);
|
||||
}
|
||||
}
|
||||
kernels::CalcInverse<3>(Jloc, Jinv);
|
||||
const real_t U = Jinv[0]*dq[0] + Jinv[3]*dq[1] + Jinv[6]*dq[2];
|
||||
const real_t V = Jinv[1]*dq[0] + Jinv[4]*dq[1] + Jinv[7]*dq[2];
|
||||
const real_t W = Jinv[2]*dq[0] + Jinv[5]*dq[1] + Jinv[8]*dq[2];
|
||||
du[0] = U; du[1] = V; du[2] = W;
|
||||
}
|
||||
QQQ(qx,qy,qz) = du[1];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Apply B^T in x: QQQ -> DQQ (transpose of B⊗G⊗B)
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
u += B(dx,qx) * QQQ(qx,qy,qz);
|
||||
}
|
||||
DQQ(dx,qy,qz) = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Apply G^T in y: DQQ -> DDQ
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
u += G(dy,qy) * DQQ(dx,qy,qz);
|
||||
}
|
||||
DDQ(dx,dy,qz) = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Apply B^T in z: DDQ -> DDD
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u += B(dz,qz) * DDQ(dx,dy,qz);
|
||||
}
|
||||
DDD(dx,dy,dz) = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Accumulate result
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
e(dx,dy,dz,c,el) += DDD(dx,dy,dz);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Process du/dz component
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t dq[3];
|
||||
if (Q_LAYOUT == QVectorLayout::byVDIM)
|
||||
{
|
||||
dq[0] = q(c,0,qx,qy,qz,el);
|
||||
dq[1] = q(c,1,qx,qy,qz,el);
|
||||
dq[2] = q(c,2,qx,qy,qz,el);
|
||||
}
|
||||
else
|
||||
{
|
||||
dq[0] = q(qx,qy,qz,c,0,el);
|
||||
dq[1] = q(qx,qy,qz,c,1,el);
|
||||
dq[2] = q(qx,qy,qz,c,2,el);
|
||||
}
|
||||
|
||||
real_t du[3] = {dq[0], dq[1], dq[2]};
|
||||
if (GRAD_PHYS)
|
||||
{
|
||||
real_t Jloc[9], Jinv[9];
|
||||
for (int col = 0; col < 3; col++)
|
||||
{
|
||||
for (int row = 0; row < 3; row++)
|
||||
{
|
||||
Jloc[row+3*col] = j(qx,qy,qz,row,col,el);
|
||||
}
|
||||
}
|
||||
kernels::CalcInverse<3>(Jloc, Jinv);
|
||||
const real_t U = Jinv[0]*dq[0] + Jinv[3]*dq[1] + Jinv[6]*dq[2];
|
||||
const real_t V = Jinv[1]*dq[0] + Jinv[4]*dq[1] + Jinv[7]*dq[2];
|
||||
const real_t W = Jinv[2]*dq[0] + Jinv[5]*dq[1] + Jinv[8]*dq[2];
|
||||
du[0] = U; du[1] = V; du[2] = W;
|
||||
}
|
||||
QQQ(qx,qy,qz) = du[2];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Apply G^T in z: QQQ -> DQQ (transpose of B⊗B⊗G)
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u += G(dz,qz) * QQQ(qx,qy,qz);
|
||||
}
|
||||
DQQ(qx,qy,dz) = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Apply B^T in y: DQQ -> DDQ
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
u += B(dy,qy) * DQQ(qx,qy,dz);
|
||||
}
|
||||
DDQ(qx,dy,dz) = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Apply B^T in x: DDQ -> DDD
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
u += B(dx,qx) * DDQ(qx,dy,dz);
|
||||
}
|
||||
DDD(dx,dy,dz) = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Accumulate result
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
e(dx,dy,dz,c,el) += DDD(dx,dy,dz);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
} // namespace internal
|
||||
|
||||
template<int DIM, QVectorLayout Q_LAYOUT, bool GRAD_PHYS, int VDIM, int D1D,
|
||||
int Q1D, int NBZ>
|
||||
QuadratureInterpolator::GradTransposeKernelType
|
||||
QuadratureInterpolator::GradTransposeKernels::Kernel()
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::DerivativesTranspose1D<Q_LAYOUT, GRAD_PHYS>; }
|
||||
else if (DIM == 2) { return internal::quadrature_interpolator::DerivativesTranspose2D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D, NBZ>; }
|
||||
else if (DIM == 3) { return internal::quadrature_interpolator::DerivativesTranspose3D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
@@ -0,0 +1,50 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "grad_transpose.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
namespace internal
|
||||
{
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
template <bool P>
|
||||
void InitGradTransposeByNodesKernels()
|
||||
{
|
||||
using k = QuadratureInterpolator::GradTransposeKernels;
|
||||
constexpr auto L = QVectorLayout::byNODES;
|
||||
// 2D
|
||||
k::Specialization<2,L,P,1,3,4>::template Opt<8>::Add();
|
||||
k::Specialization<2,L,P,1,4,6>::template Opt<4>::Add();
|
||||
k::Specialization<2,L,P,1,5,8>::template Opt<2>::Add();
|
||||
|
||||
k::Specialization<2,L,P,2,3,3>::template Opt<8>::Add();
|
||||
k::Specialization<2,L,P,2,3,4>::template Opt<8>::Add();
|
||||
k::Specialization<2,L,P,2,4,6>::template Opt<4>::Add();
|
||||
k::Specialization<2,L,P,2,5,8>::template Opt<2>::Add();
|
||||
// 3D
|
||||
k::Specialization<3,L,P,1,3,4>::Add();
|
||||
k::Specialization<3,L,P,1,4,6>::Add();
|
||||
k::Specialization<3,L,P,1,5,8>::Add();
|
||||
k::Specialization<3,L,P,3,3,4>::Add();
|
||||
k::Specialization<3,L,P,3,4,6>::Add();
|
||||
k::Specialization<3,L,P,3,5,8>::Add();
|
||||
}
|
||||
|
||||
template void InitGradTransposeByNodesKernels<false>();
|
||||
template void InitGradTransposeByNodesKernels<true>();
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
} // namespace internal
|
||||
} // namespace mfem
|
||||
@@ -0,0 +1,50 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "grad_transpose.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
namespace internal
|
||||
{
|
||||
namespace quadrature_interpolator
|
||||
{
|
||||
|
||||
template <bool P>
|
||||
void InitGradTransposeByVDimKernels()
|
||||
{
|
||||
using k = QuadratureInterpolator::GradTransposeKernels;
|
||||
constexpr auto L = QVectorLayout::byVDIM;
|
||||
// 2D
|
||||
k::Specialization<2,L,P,1,3,4>::template Opt<8>::Add();
|
||||
k::Specialization<2,L,P,1,4,6>::template Opt<4>::Add();
|
||||
k::Specialization<2,L,P,1,5,8>::template Opt<2>::Add();
|
||||
|
||||
k::Specialization<2,L,P,2,3,3>::template Opt<8>::Add();
|
||||
k::Specialization<2,L,P,2,3,4>::template Opt<8>::Add();
|
||||
k::Specialization<2,L,P,2,4,6>::template Opt<4>::Add();
|
||||
k::Specialization<2,L,P,2,5,8>::template Opt<2>::Add();
|
||||
// 3D
|
||||
k::Specialization<3,L,P,1,3,4>::Add();
|
||||
k::Specialization<3,L,P,1,4,6>::Add();
|
||||
k::Specialization<3,L,P,1,5,8>::Add();
|
||||
k::Specialization<3,L,P,3,3,4>::Add();
|
||||
k::Specialization<3,L,P,3,4,6>::Add();
|
||||
k::Specialization<3,L,P,3,5,8>::Add();
|
||||
}
|
||||
|
||||
template void InitGradTransposeByVDimKernels<false>();
|
||||
template void InitGradTransposeByVDimKernels<true>();
|
||||
|
||||
} // namespace quadrature_interpolator
|
||||
} // namespace internal
|
||||
} // namespace mfem
|
||||
@@ -11,6 +11,7 @@
|
||||
|
||||
#include "quadinterpolator.hpp"
|
||||
#include "qinterp/grad.hpp"
|
||||
#include "qinterp/grad_transpose.hpp"
|
||||
#include "qinterp/eval.hpp"
|
||||
#include "qspace.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
@@ -30,7 +31,10 @@ void InitEvalKernels();
|
||||
void InitDetKernels();
|
||||
template <bool P> void InitGradByNodesKernels();
|
||||
template <bool P> void InitGradByVDimKernels();
|
||||
template <bool P> void InitGradTransposeByNodesKernels();
|
||||
template <bool P> void InitGradTransposeByVDimKernels();
|
||||
void InitTensorEvalHDivKernels();
|
||||
void InitEvalTransposeByVDimKernels();
|
||||
struct Kernels
|
||||
{
|
||||
Kernels()
|
||||
@@ -45,12 +49,19 @@ struct Kernels
|
||||
// Phys grad kernels
|
||||
InitGradByNodesKernels<true>();
|
||||
InitGradByVDimKernels<true>();
|
||||
// Non-phys grad transpose kernels
|
||||
InitGradTransposeByNodesKernels<false>();
|
||||
InitGradTransposeByVDimKernels<false>();
|
||||
// Phys grad transpose kernels
|
||||
InitGradTransposeByNodesKernels<true>();
|
||||
InitGradTransposeByVDimKernels<true>();
|
||||
// Determinants
|
||||
InitDetKernels();
|
||||
// Non-tensor
|
||||
InitEvalKernels();
|
||||
// Tensor (quad,hex) H(div)
|
||||
InitTensorEvalHDivKernels();
|
||||
InitEvalTransposeByVDimKernels();
|
||||
}
|
||||
};
|
||||
}
|
||||
@@ -646,16 +657,59 @@ void QuadratureInterpolator::MultHDiv(const Vector &e_vec,
|
||||
MFEM_CONTRACT_VAR(q_div);
|
||||
}
|
||||
|
||||
void QuadratureInterpolator::MultTranspose(unsigned eval_flags,
|
||||
const Vector &q_val,
|
||||
const Vector &q_der,
|
||||
Vector &e_vec) const
|
||||
void QuadratureInterpolator::AddMultTranspose(unsigned eval_flags,
|
||||
const Vector &q_val,
|
||||
const Vector &q_der,
|
||||
Vector &e_vec) const
|
||||
{
|
||||
MFEM_CONTRACT_VAR(eval_flags);
|
||||
MFEM_CONTRACT_VAR(q_val);
|
||||
MFEM_CONTRACT_VAR(q_der);
|
||||
MFEM_CONTRACT_VAR(e_vec);
|
||||
MFEM_ABORT("this method is not implemented yet");
|
||||
const int ne = fespace->GetNE();
|
||||
if (ne == 0) { return; }
|
||||
const FiniteElement *fe = fespace->GetFE(0);
|
||||
const int vdim = fespace->GetVDim();
|
||||
const int sdim = fespace->GetMesh()->SpaceDimension();
|
||||
|
||||
const bool use_tensor_eval =
|
||||
use_tensor_products &&
|
||||
dynamic_cast<const TensorBasisElement*>(fe) != nullptr;
|
||||
const IntegrationRule *ir =
|
||||
IntRule ? IntRule : &qspace->GetElementIntRule(0);
|
||||
const DofToQuad::Mode mode =
|
||||
use_tensor_eval ? DofToQuad::TENSOR : DofToQuad::FULL;
|
||||
const DofToQuad &maps = fe->GetDofToQuad(*ir, mode);
|
||||
const int dim = maps.FE->GetDim();
|
||||
const int nd = maps.ndof;
|
||||
const int nq = maps.nqpt;
|
||||
|
||||
const GeometricFactors *geom = nullptr;
|
||||
if (eval_flags & PHYSICAL_DERIVATIVES)
|
||||
{
|
||||
const int jacobians = GeometricFactors::JACOBIANS;
|
||||
geom = fespace->GetMesh()->GetGeometricFactors(*ir, jacobians);
|
||||
}
|
||||
|
||||
if (use_tensor_eval)
|
||||
{
|
||||
if (eval_flags & (VALUES | PHYSICAL_VALUES))
|
||||
{
|
||||
TensorEvalTransposeKernels::Run(dim, q_layout, vdim, nd, nq, ne,
|
||||
maps.B.Read(), q_val.Read(),
|
||||
e_vec.ReadWrite(), vdim, nd, nq);
|
||||
}
|
||||
if (eval_flags & (DERIVATIVES | PHYSICAL_DERIVATIVES))
|
||||
{
|
||||
const bool phys = (eval_flags & PHYSICAL_DERIVATIVES);
|
||||
const real_t *J = phys ? geom->J.Read() : nullptr;
|
||||
const int s_dim = phys ? sdim : dim;
|
||||
GradTransposeKernels::Run(dim, q_layout, phys, vdim, nd, nq, ne,
|
||||
maps.B.Read(), maps.G.Read(), J,
|
||||
q_der.Read(), e_vec.ReadWrite(),
|
||||
s_dim, vdim, nd, nq);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Non-tensor MultTranspose not yet implemented");
|
||||
}
|
||||
}
|
||||
|
||||
void QuadratureInterpolator::Values(const Vector &e_vec,
|
||||
|
||||
@@ -152,8 +152,8 @@ public:
|
||||
void Determinants(const Vector &e_vec, Vector &q_det) const;
|
||||
|
||||
/// Perform the transpose operation of Mult(). (TODO)
|
||||
void MultTranspose(unsigned eval_flags, const Vector &q_val,
|
||||
const Vector &q_der, Vector &e_vec) const;
|
||||
void AddMultTranspose(unsigned eval_flags, const Vector &q_val,
|
||||
const Vector &q_der, Vector &e_vec) const;
|
||||
|
||||
/// @brief Returns true if the given finite element space is supported by
|
||||
/// QuadratureInterpolator.
|
||||
@@ -178,6 +178,13 @@ public:
|
||||
using TensorEvalHDivKernelType =
|
||||
void(*)(const int, const real_t *, const real_t *, const real_t *,
|
||||
const real_t *, real_t *, const int, const int);
|
||||
using TensorEvalTransposeKernelType = void(*)(const int, const real_t *,
|
||||
const real_t *,
|
||||
real_t *, const int, const int, const int);
|
||||
using GradTransposeKernelType = void(*)(const int, const real_t *,
|
||||
const real_t *, const real_t *,
|
||||
const real_t *, real_t *,
|
||||
const int, const int, const int, const int);
|
||||
|
||||
MFEM_REGISTER_KERNELS(TensorEvalKernels, TensorEvalKernelType,
|
||||
(int, QVectorLayout, int, int, int), (int));
|
||||
@@ -189,6 +196,10 @@ public:
|
||||
(int, QVectorLayout, bool, int, int), (int));
|
||||
MFEM_REGISTER_KERNELS(TensorEvalHDivKernels, TensorEvalHDivKernelType,
|
||||
(int, QVectorLayout, unsigned, int, int));
|
||||
MFEM_REGISTER_KERNELS(TensorEvalTransposeKernels, TensorEvalTransposeKernelType,
|
||||
(int, QVectorLayout, int, int, int), (int));
|
||||
MFEM_REGISTER_KERNELS(GradTransposeKernels, GradTransposeKernelType,
|
||||
(int, QVectorLayout, bool, int, int, int), (int));
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
+7
-12
@@ -844,8 +844,6 @@ void ConformingFaceRestriction::ComputeGatherIndices(
|
||||
gather_offsets[0] = 0;
|
||||
}
|
||||
|
||||
static inline int absdof(int i) { return i < 0 ? -1-i : i; }
|
||||
|
||||
void ConformingFaceRestriction::SetFaceDofsScatterIndices(
|
||||
const Mesh::FaceInformation &face,
|
||||
const int face_index,
|
||||
@@ -868,9 +866,9 @@ void ConformingFaceRestriction::SetFaceDofsScatterIndices(
|
||||
{
|
||||
const int lex_volume_dof = face_map[face_dof];
|
||||
const int s_volume_dof = AsConst(vol_dof_map)[lex_volume_dof]; // signed
|
||||
const int volume_dof = absdof(s_volume_dof);
|
||||
const int volume_dof = UnsignIndex(s_volume_dof);
|
||||
const int s_global_dof = elem_map[elem_index*elem_dofs + volume_dof];
|
||||
const int global_dof = absdof(s_global_dof);
|
||||
const int global_dof = UnsignIndex(s_global_dof);
|
||||
const int restriction_dof = face_dofs*face_index + face_dof;
|
||||
scatter_indices[restriction_dof] = s_global_dof;
|
||||
++gather_offsets[global_dof + 1];
|
||||
@@ -897,10 +895,10 @@ void ConformingFaceRestriction::SetFaceDofsGatherIndices(
|
||||
{
|
||||
const int lex_volume_dof = face_map[face_dof];
|
||||
const int s_volume_dof = AsConst(vol_dof_map)[lex_volume_dof];
|
||||
const int volume_dof = absdof(s_volume_dof);
|
||||
const int volume_dof = UnsignIndex(s_volume_dof);
|
||||
const int s_global_dof = elem_map[elem_index*elem_dofs + volume_dof];
|
||||
const int sgn = (s_global_dof >= 0) ? 1 : -1;
|
||||
const int global_dof = absdof(s_global_dof);
|
||||
const int global_dof = UnsignIndex(s_global_dof);
|
||||
const int restriction_dof = face_dofs*face_index + face_dof;
|
||||
const int s_restriction_dof = (sgn >= 0) ? restriction_dof : -1 -
|
||||
restriction_dof;
|
||||
@@ -1400,20 +1398,17 @@ void L2FaceRestriction::PermuteAndSetSharedFaceDofsScatterIndices2(
|
||||
const int dim = fes.GetMesh()->Dimension();
|
||||
const int dof1d = fes.GetTypicalFE()->GetOrder()+1;
|
||||
fes.GetTypicalFE()->GetFaceMap(face_id2, face_map);
|
||||
Array<int> face_nbr_dofs;
|
||||
const ParFiniteElementSpace &pfes =
|
||||
static_cast<const ParFiniteElementSpace&>(this->fes);
|
||||
pfes.GetFaceNbrElementVDofs(elem_index, face_nbr_dofs);
|
||||
|
||||
for (int face_dof_elem1 = 0; face_dof_elem1 < face_dofs; ++face_dof_elem1)
|
||||
{
|
||||
const int face_dof_elem2 = PermuteFaceL2(dim, face_id1, face_id2,
|
||||
orientation, dof1d, face_dof_elem1);
|
||||
const int volume_dof_elem2 = face_map[face_dof_elem2];
|
||||
const int global_dof_elem2 = face_nbr_dofs[volume_dof_elem2];
|
||||
// Encode the volume DOF index and element index
|
||||
const int global_dof_elem2 = elem_index*elem_dofs + volume_dof_elem2;
|
||||
const int restriction_dof_elem2 = face_dofs*face_index + face_dof_elem1;
|
||||
// Trick to differentiate dof location inter/shared
|
||||
scatter_indices2[restriction_dof_elem2] = ndofs+global_dof_elem2;
|
||||
scatter_indices2[restriction_dof_elem2] = ndofs + global_dof_elem2;
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
+5
-2
@@ -4102,8 +4102,11 @@ void TMOP_Integrator::GetSurfaceFittingErrors(const Vector &d_loc,
|
||||
#ifdef MFEM_USE_MPI
|
||||
// Don't count the overlapping DOFs in parallel.
|
||||
// The pfes might be ordered byVDIM, while the loop goes consecutively.
|
||||
const int dof_i = pfes->DofToVDof(i, 0);
|
||||
if (parallel && pfes->GetLocalTDofNumber(dof_i) < 0) { continue; }
|
||||
if (parallel)
|
||||
{
|
||||
const int dof_i = pfes->DofToVDof(i, 0);
|
||||
if (pfes->GetLocalTDofNumber(dof_i) < 0) { continue; }
|
||||
}
|
||||
#endif
|
||||
|
||||
dof_cnt++;
|
||||
|
||||
+24
-1
@@ -114,10 +114,22 @@ public:
|
||||
Array<T> &operator=(const Array<T> &src) { src.Copy(*this); return *this; }
|
||||
|
||||
/// Move assignment operator
|
||||
/** If *this is a non-owning view (e.g., from MakeRef()), the data is copied
|
||||
so that the base is also modified. */
|
||||
Array<T> &operator=(Array<T> &&src)
|
||||
{
|
||||
if (this == &src) { return *this; }
|
||||
Swap(src); // Swap does not use move assignment!
|
||||
// If *this is a non-owning view (alias), and its capacity is sufficient
|
||||
// to contain src, then copy into *this so that the alias's base memory is
|
||||
// modified.
|
||||
if (!OwnsData() && Capacity() >= src.Size())
|
||||
{
|
||||
*this = src; // Copy assignment.
|
||||
}
|
||||
else
|
||||
{
|
||||
Swap(src); // Swap the pointers only.
|
||||
}
|
||||
src.DeleteAll();
|
||||
return *this;
|
||||
}
|
||||
@@ -251,6 +263,9 @@ public:
|
||||
/// Make this Array a reference to 'master'.
|
||||
inline void MakeRef(const Array &master);
|
||||
|
||||
/// Make this Array a reference to the given sub-Memory of @a base.
|
||||
inline void MakeRef(Memory<T> &base, int offset, int size_);
|
||||
|
||||
/// Reset the Array to use the given external Memory @a mem and size @a s.
|
||||
/** If @a own_mem is false, the Array will not own any of the pointers of
|
||||
@a mem.
|
||||
@@ -1073,6 +1088,14 @@ inline void Array<T>::MakeRef(const Array &master)
|
||||
data.MakeAlias(master.GetMemory(), 0, size);
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::MakeRef(Memory<T> &base, int offset, int size_)
|
||||
{
|
||||
data.Delete();
|
||||
size = size_;
|
||||
data.MakeAlias(base, offset, size_);
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::NewMemoryAndSize(
|
||||
const Memory<T> &mem, int s, bool own_mem)
|
||||
|
||||
+24
-17
@@ -14,6 +14,7 @@
|
||||
|
||||
#include "../config/config.hpp"
|
||||
#include "array.hpp"
|
||||
#include "text.hpp"
|
||||
|
||||
#include <iostream>
|
||||
#include <map>
|
||||
@@ -247,7 +248,8 @@ inline void ArraysByName<T>::Print(std::ostream &os, int width) const
|
||||
os << data.size() << '\n';
|
||||
for (auto const &it : data)
|
||||
{
|
||||
os << '"' << it.first << '"' << '\n' << it.second.Size() << '\n';
|
||||
// Note: The method Load() can read any string formatted with std::quoted.
|
||||
os << std::quoted(it.first) << '\n' << it.second.Size() << '\n';
|
||||
it.second.Print(os, width > 0 ? width : it.second.Size());
|
||||
}
|
||||
}
|
||||
@@ -258,31 +260,36 @@ void ArraysByName<T>::Load(std::istream &in)
|
||||
int NumArrays;
|
||||
in >> NumArrays;
|
||||
|
||||
std::string ArrayLine, ArrayName;
|
||||
for (int i=0; i < NumArrays; i++)
|
||||
for (int i = 0; i < NumArrays; i++)
|
||||
{
|
||||
in >> std::ws;
|
||||
getline(in, ArrayLine);
|
||||
|
||||
std::size_t q0 = ArrayLine.find('"');
|
||||
std::size_t q1 = ArrayLine.rfind('"');
|
||||
|
||||
if (q0 != std::string::npos && q1 > q0)
|
||||
// Read the name:
|
||||
// - If the stream 'in' starts with " then parse it with the function
|
||||
// parse_quoted_string() from text.hpp. In this case, the name can be
|
||||
// empty. Note: this case allows for reading any string formatted using
|
||||
// std::quoted, e.g. as in the method Print().
|
||||
// - If the name does not start with " then the name ends with the first
|
||||
// white space character (and the white space character is not included
|
||||
// in the name). Since white space characters are skipped before reading
|
||||
// the name, there will be at least one non-white-space character in the
|
||||
// name in this case.
|
||||
std::string ArrayName;
|
||||
if (in.peek() == '"')
|
||||
{
|
||||
// Locate set name between first and last double quote
|
||||
ArrayName = ArrayLine.substr(q0+1,q1-q0-1);
|
||||
if (parse_quoted_string(ArrayName, in) != 0)
|
||||
{
|
||||
MFEM_ABORT("error parsing input!");
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
// If no double quotes found locate set name using white space
|
||||
q1 = ArrayLine.find(' ');
|
||||
ArrayName = ArrayLine.substr(0,q1-1);
|
||||
in >> ArrayName;
|
||||
MFEM_VERIFY(in.good(), "error parsing input!");
|
||||
}
|
||||
|
||||
// Ignore the remainder of the line which may contain explanatory comments
|
||||
data[ArrayName].Load(in, 0);
|
||||
// Read the array
|
||||
data[ArrayName].Load(in);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+4
-4
@@ -726,16 +726,16 @@ std::string Device::GetUUID(const int device_id)
|
||||
MFEM_GPU_CHECK(cudaGetDeviceProperties(&prop, device_id));
|
||||
for (int i = 0; i < 16; ++i)
|
||||
{
|
||||
res << std::setfill('0') << std::setw(2) << std::hex
|
||||
<< static_cast<unsigned>(prop.uuid.bytes[i]);
|
||||
const unsigned b = static_cast<unsigned char>(prop.uuid.bytes[i]);
|
||||
res << std::setfill('0') << std::setw(2) << std::hex << b;
|
||||
}
|
||||
#elif defined(MFEM_USE_HIP)
|
||||
hipUUID uuid;
|
||||
MFEM_GPU_CHECK(hipDeviceGetUuid(&uuid, device_id));
|
||||
for (int i = 0; i < 16; ++i)
|
||||
{
|
||||
res << std::setfill('0') << std::setw(2) << std::hex
|
||||
<< static_cast<unsigned>(uuid.bytes[i]);
|
||||
const unsigned b = static_cast<unsigned char>(uuid.bytes[i]);
|
||||
res << std::setfill('0') << std::setw(2) << std::hex << b;
|
||||
}
|
||||
#endif
|
||||
return res.str();
|
||||
|
||||
@@ -113,6 +113,10 @@ void SetGlobalMPI_Comm(MPI_Comm comm);
|
||||
/// to suppress the warning.
|
||||
const char* GetEnv(const char* name);
|
||||
|
||||
/// Signed indices i -> -1 - i are used as a convention to encode orientation.
|
||||
inline MFEM_HOST_DEVICE int FlipIndexSign(int i) { return -1 - i; }
|
||||
inline MFEM_HOST_DEVICE int UnsignIndex(int i) { return i < 0 ? -1 - i : i; }
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
|
||||
@@ -759,7 +759,9 @@ private:
|
||||
{
|
||||
switch (mt)
|
||||
{
|
||||
case MT::HOST_DEBUG: return new MmuHostMemorySpace();
|
||||
case MT::HOST_DEBUG:
|
||||
if (GetEnv("MFEM_MMU_STD")) { return new StdHostMemorySpace(); }
|
||||
return new MmuHostMemorySpace();
|
||||
#ifdef MFEM_USE_UMPIRE
|
||||
case MT::HOST_UMPIRE:
|
||||
return new UmpireHostMemorySpace(
|
||||
@@ -788,7 +790,9 @@ private:
|
||||
case MT::DEVICE_UMPIRE: return new NoDeviceMemorySpace();
|
||||
case MT::DEVICE_UMPIRE_2: return new NoDeviceMemorySpace();
|
||||
#endif
|
||||
case MT::DEVICE_DEBUG: return new MmuDeviceMemorySpace();
|
||||
case MT::DEVICE_DEBUG:
|
||||
if (GetEnv("MFEM_MMU_STD")) { return new StdDeviceMemorySpace(); }
|
||||
return new MmuDeviceMemorySpace();
|
||||
case MT::DEVICE:
|
||||
{
|
||||
#if defined(MFEM_USE_CUDA)
|
||||
|
||||
Symlink
+1
@@ -0,0 +1 @@
|
||||
../../stash/debug/nvtx.hpp
|
||||
@@ -50,6 +50,48 @@ inline void filter_dos(std::string &line)
|
||||
}
|
||||
}
|
||||
|
||||
/** @brief Read a string formatted using std::quoted. Return nonzero on error.
|
||||
|
||||
The stream @a in must begin with @a delim. After clearing @a result and
|
||||
extracting the opening @a delim, characters are extracted from @a in and
|
||||
processed as follows:
|
||||
- if the character is @a delim, return 0;
|
||||
- if the character is different from @a escape, it is appended to @a result;
|
||||
- if the character is @a escape, the next character from @a in is extracted
|
||||
and if it is one of @a delim or @a escape, it is appended to @a result;
|
||||
otherwise, both @a escape and the character after it are appended to
|
||||
@a result; note that the latter case is not possible if the input was
|
||||
formatted with std::quoted with the same @a delim and @a escape
|
||||
characters.
|
||||
|
||||
If the stream @a in does not begin with @a delim, error code 1 is returned.
|
||||
If reading the stream fails, error code 2 is returned. On success, zero is
|
||||
returned and the closing @a delim character is the last character extracted
|
||||
from @a in. */
|
||||
inline int parse_quoted_string(std::string &result, std::istream &in,
|
||||
char delim = '"', char escape = '\\')
|
||||
{
|
||||
using tt = std::string::traits_type; // std::char_traits<char>
|
||||
auto equal = [](tt::int_type c1, tt::char_type c2) -> bool
|
||||
{
|
||||
return tt::eq_int_type(c1, tt::to_int_type(c2));
|
||||
};
|
||||
result.clear();
|
||||
if (!equal(in.peek(), delim)) { return 1; }
|
||||
in.get(); // extract delim
|
||||
for (auto c = in.get(); !equal(c, delim); c = in.get())
|
||||
{
|
||||
if (equal(c, escape))
|
||||
{
|
||||
c = in.get();
|
||||
if (!equal(c, escape) && !equal(c, delim)) { result += escape; }
|
||||
}
|
||||
if (!in) { return 2; }
|
||||
result += tt::to_char_type(c);
|
||||
}
|
||||
return 0;
|
||||
}
|
||||
|
||||
/// Convert an integer to a 0-padded string with the given number of @a digits
|
||||
inline std::string to_padded_string(int i, int digits)
|
||||
{
|
||||
|
||||
@@ -27,6 +27,7 @@ list(APPEND SRCS
|
||||
handle.cpp
|
||||
matrix.cpp
|
||||
mma.cpp
|
||||
multivector.cpp
|
||||
ode.cpp
|
||||
operator.cpp
|
||||
ordering.cpp
|
||||
@@ -63,6 +64,7 @@ list(APPEND HDRS
|
||||
linalg.hpp
|
||||
matrix.hpp
|
||||
mma.hpp
|
||||
multivector.hpp
|
||||
ode.hpp
|
||||
operator.hpp
|
||||
ordering.hpp
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user