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503 Commits
Author SHA1 Message Date
camierjs 58a2c7ac15 Merge master in lor-gpu 2022-10-23 09:54:23 -07:00
Tzanio Kolev b7a4b61b5c Merge pull request #3199 from mfem/mfem-4.5-dev
Final changes for mfem-4.5
2022-10-22 15:33:35 -07:00
Tzanio Kolev 0a649ec155 mfem-4.5 release date is October 22, 2022 2022-10-22 15:10:18 -07:00
Tzanio Kolev c00eb3219e Merge branch 'mfem-4.5-dev' of github.com:mfem/mfem into mfem-4.5-dev 2022-10-21 16:58:01 -07:00
Tzanio Kolev eb08e9523d Finalized CHANGELOG for mfem-4.5 2022-10-21 16:57:53 -07:00
Veselin Dobrev 215d037a5a Fix a bug:
#elif MFEM_USE_HIP  -->  #elif defined(MFEM_USE_HIP)
2022-10-21 16:50:22 -07:00
Veselin Dobrev bf21800df8 In the CMake build system allow MFEM_MPIEXEC and MPIEXEC_NUMPROC_FLAG
to contain spaces, e.g. to allow -DMFEM_MPIEXEC="flux mini run".
2022-10-21 16:39:19 -07:00
Will Pazner 4a1fc607ce Fix bug when using IntegratedGLL basis in thread safe mode 2022-10-21 15:45:53 -07:00
Tzanio Kolev a2ffa0af29 More typos 2022-10-21 15:45:29 -07:00
Tzanio Kolev e7e8a67924 Revert a change from PR #3117 which caused double-free in Serac 2022-10-21 15:02:03 -07:00
Tzanio Kolev 19e40fa95f Typos 2022-10-21 15:00:47 -07:00
Tzanio Kolev 27d11e933f Merge branch 'master' into mfem-4.5-dev
Conflicts:
	CHANGELOG
2022-10-21 11:01:20 -07:00
Veselin Dobrev 762cbd9194 Use C++14 when SUNDIALS is enabled; needed for SUNDIALS >= 6.4.0 2022-10-21 10:56:02 -07:00
Veselin Dobrev 33a2dbac73 Merge pull request #3258 from mfem/quadfunc-projectGF-fix
Fix for autotest error in Remhos
2022-10-21 10:53:02 -07:00
Veselin Dobrev 8ca9061ce4 Merge pull request #3262 from mfem/hypre-commpkg-fix
check comm pkg
2022-10-21 10:51:36 -07:00
Tzanio Kolev 09fa91c42c Merge pull request #3257 from mfem/hypre-2-26-0-fixes
Some fixes for hypre v2.26.0
2022-10-21 10:48:21 -07:00
Veselin Dobrev b1dceed4c0 Fix the places for the EnsureMultTranspose calls in class
SparseMatrix.

Fix a warning in class KershawTransformation.
2022-10-21 05:34:37 -07:00
Tzanio Kolev fd6d3dcef4 Merge branch 'master' into mfem-4.5-dev
Conflicts:
	CHANGELOG
2022-10-20 19:14:11 -07:00
Vladimir Z Tomov 44f3fa8c48 Updated one more comment. 2022-10-20 17:03:13 -07:00
Vladimir Z Tomov 0a109e91cf Restored the old code, set the layout before computing FaceGeometricFactors. 2022-10-20 16:51:55 -07:00
Tzanio KolevandWill Pazner 8784555248 [SQUASH] Assembly levels for LinearForm (#3235)
* Assembly levels for LinearForm

* Typo

* Switched to Mesh::Update in methods like Mesh::SetNodes

* Update mesh/mesh.hpp

Co-authored-by: Will Pazner <11493037+pazner@users.noreply.github.com>

* Addressing Will's comments

* Update mesh/mesh.hpp

Co-authored-by: Will Pazner <11493037+pazner@users.noreply.github.com>

* Changes in linform-pa-fix after 10/14/22 meeting

* Update fem/linearform.hpp

Co-authored-by: Will Pazner <11493037+pazner@users.noreply.github.com>

* Update fem/linearform.hpp

Co-authored-by: Will Pazner <11493037+pazner@users.noreply.github.com>

* Some fixes from Will

* More fixes from Will

* Have LinearForm::Assemble check the value of fast_assembly

* Final reviewer comments for PR 3235

Co-authored-by: Will Pazner <11493037+pazner@users.noreply.github.com>
2022-10-20 16:50:47 -07:00
Veselin Dobrev f494da76f7 Merge branch 'master' into hypre-2-26-0-fixes
Resolved conflicts:
   CHANGELOG
2022-10-20 16:12:58 -07:00
Veselin Dobrev 1482864193 Remove the need to explicitly call EnsureMultTranspose in the
classes SparseMatrix and HypreParMatrix.

Added new methood HypreParMatrix::ResetTranspose.

Added some crarifying doxygen documentation.
2022-10-20 16:03:23 -07:00
Tzanio Kolev 9ae0f7a9a7 Merge pull request #3043 from mfem/gslib-node-ordering
Node ordering in GSLIBFindPoints and TMOP
2022-10-20 14:40:02 -07:00
Tzanio Kolev 0c6de1922c Merge pull request #3230 from mfem/tmopupdate-kershawtransform
Kershaw transformation
2022-10-20 14:39:05 -07:00
Veselin Dobrev 34448a8bb8 Merge pull request #3256 from mfem/supports-device-fix
Fix parallel hang in LinearForm::SupportsDevice
2022-10-20 13:11:49 -07:00
Veselin Dobrev ae7f17537c Fix warnings in HypreAMS::ResetAMSPrecond() for hypre >= 2.26.0 2022-10-20 08:48:48 -07:00
Veselin Dobrev 8b60ad5e7a Merge branch 'master' into mfem-4.5-dev 2022-10-20 08:39:59 -07:00
Socratis Petrides 905a856bd5 remove checks from constructors 2022-10-20 08:11:29 -07:00
Socratis Petrides d2106d86c3 check comm pkg 2022-10-19 19:22:12 -07:00
Tzanio Kolev 0504397b96 Merge pull request #3179 from mfem/stefanozampini/block-split
Exploit PETSc matrix block structure
2022-10-19 15:46:22 -07:00
Tzanio Kolev ec0f08bc2a Merge pull request #3096 from mfem/hypreams-mem-leak-fix
Fix memory leak found in HypreAMS when SetOperator is called multiple times [hypreams-mem-leak-fix]
2022-10-19 15:45:54 -07:00
Vladimir Z Tomov 975ec13e21 Fixes an error in the multi-field discrete target construction. 2022-10-19 12:23:58 -07:00
Vladimir Z Tomov 3d4ebdecb4 Merge branch 'master' into gslib-node-ordering 2022-10-19 11:54:53 -07:00
Ketan Mittal cd48e65827 restore relative path 2022-10-19 08:13:21 -07:00
Ketan Mittal 6650ae9bba Merge branch 'master' of https://github.com/mfem/mfem into tmopupdate-kershawtransform 2022-10-19 08:11:10 -07:00
Vladimir Z Tomov 1f3b58eab8 style. 2022-10-19 00:12:56 -07:00
Vladimir Z Tomov 00a2a38e8f Doxygen comment and extra ASSERT. 2022-10-19 00:09:33 -07:00
Vladimir Z Tomov 766d163a86 Created new interpolators in QuadratureFunction::ProjectGridFunction(). 2022-10-18 14:19:26 -07:00
Veselin Dobrev 5f81cb9d08 Tweak the script 'sample-runs.sh' to avoid early termination
when timing is enabled and a sample run line is ill formed.

Fix the sample runs in 'miniapps/solvers/block-solvers.cpp'.

Conflicts:
	miniapps/solvers/block-solvers.cpp
2022-10-18 14:06:17 -07:00
Tzanio 40e43e6ff3 Adjusted formatting of sample runs in miniapps/toys/life.cpp 2022-10-18 14:04:19 -07:00
Tzanio Kolev f111d240c4 Updated CHANGELOG 2022-10-18 13:58:34 -07:00
Tzanio Kolev 451939d7c8 Moved CHANGELOG entries to mfem-4.5 that were incorrectly under mfem-4.4 2022-10-18 13:47:43 -07:00
Veselin Dobrev b89de70dd1 A few small fixes for warnings and a command line argument. 2022-10-18 12:57:41 -07:00
Veselin Dobrev d7db3de9af Some fixes for hypre v2.26.0 2022-10-18 12:13:49 -07:00
Sebastian Grimberg a6bfdf3ed1 Fix parallel hang in LinearForm::SupportsDevice 2022-10-18 12:03:41 -07:00
Tzanio Kolev 64d4d39083 Typo 2022-10-17 12:19:07 -07:00
luz paz 9726992248 Fix typos
Found via `codespell -q 3 -L allright,ba,bu,childs,equil,esy,fo,fom,hda,localy,lod,mone,nd,ned,nnumber,numer,ot,pres,ro,seh,shat,solfes,strat,tbe,te,tthe,warmup`
2022-10-17 12:15:17 -07:00
Tzanio Kolev 67cac261e3 Merge branch 'master' into mfem-4.5-dev 2022-10-17 12:15:02 -07:00
Tzanio Kolev c644f3d174 Merge pull request #3233 from mfem/arm64-performance-flags
Change performance miniapps compiler flags for Apple M1
2022-10-14 18:35:18 -07:00
Will Pazner a8fbe3aff4 Merge pull request #3146 from mfem/tmop-update3D
Update of the 3D tmop metrics
2022-10-13 09:30:58 -07:00
Will Pazner e0792c83cf Merge pull request #3170 from mfem/sundials-v6-dev
Support for SUNDIALS v6
2022-10-13 09:30:30 -07:00
Veselin Dobrev 1b535bdf6e Merge branch 'master' into sundials-v6-dev 2022-10-10 12:14:36 -07:00
Will Pazner 4772c94432 Merge pull request #3136 from mfem/gridfunc-gettruevec-fix
Modify GridFunction::GetTrueVector behavior to SetTrueVector if `t_vec` does not already exist
2022-10-10 11:18:00 -07:00
Will Pazner 62b3ef4041 Merge pull request #3243 from mfem/fix-get-mem-type
Fix a bug and a typo
2022-10-10 11:17:26 -07:00
Will Pazner cb4cfedbf8 Merge pull request #3240 from mfem/sjg/linearform-ext-marker-fix
Fix bug for markers in `LinearFormExtension::Assemble`
2022-10-10 11:16:46 -07:00
Will Pazner d7e1615f4c Revert test of memory leak in ex3p 2022-10-10 11:08:12 -07:00
Will Pazner 35ca1be13d Fix double setup of HypreADS when calling SetOperator more than once 2022-10-10 11:06:24 -07:00
Ketan MittalandChris Vogl 096f3143fb Get rid of relative path
Co-authored-by: Chris Vogl <vogl2@llnl.gov>
2022-10-07 15:05:18 -07:00
Will Pazner 0e8e2fb3c3 Fix arch flags for performance miniapp with gcc 2022-10-06 09:06:13 -07:00
Veselin Dobrev d6155a2259 Merge branch 'master' into sundials-v6-dev
Resolved conflicts:
   CHANGELOG
2022-10-06 01:24:02 -07:00
Veselin Dobrev 82dacf6441 In the GNU make build system, support SUNDIALS_DIR defined using
the @MFEM_DIR@ path substitution.
2022-10-06 01:09:12 -07:00
Veselin Dobrev 6caa552f0d Fix SUNDIALS + CUDA support when using SUNDIALS < v6 2022-10-06 00:44:05 -07:00
Ketan Mittal 771780350f fix sample run 2022-10-04 16:57:47 -07:00
Ketan Mittal 5265ab4959 Merge branch 'gslib-node-ordering' of https://github.com/mfem/mfem into gslib-node-ordering 2022-10-04 11:45:52 -07:00
Ketan Mittal 1ccd5c72c9 merge master and resolve conflict 2022-10-04 11:45:23 -07:00
Ketan Mittal 80f8ba8d6c fix merge conflict and bug 2022-10-03 22:37:39 -07:00
Ketan Mittal 498d4fe0a1 bug fix: EvalW of mu_58 2022-10-02 16:46:54 -07:00
Veselin Dobrev a7d760c24f In Memory<T>::GetMemoryType(), handle the case when h_ptr is
NULL and (flags & VALID_DEVICE) is true.

In CMakeLists.txt, fix a typo.
2022-09-30 18:22:03 -07:00
Sebastian Grimberg 5611e7b605 Address comment for empty attributes/bdr_attributes 2022-09-30 14:37:37 -04:00
Sebastian Grimberg 5e457c5b0e Fix bug for markers in LinearFormExtension::Assemble 2022-09-30 09:59:11 -04:00
Tzanio Kolev a97923ed62 Merge pull request #3143 from mfem/linear-form-ext-fixes
LinearFormExtension fixes
2022-09-29 11:10:32 -07:00
Tzanio Kolev 052e09e792 Merge branch 'master' into linear-form-ext-fixes 2022-09-29 11:10:18 -07:00
Tzanio Kolev e98d10d688 Updated CHANGELOG 2022-09-29 11:06:38 -07:00
Ketan Mittal 15e3f3f35b reviewer comments 2022-09-28 13:08:35 -07:00
Ketan Mittal 436c6b29d0 Merge branch 'master' of https://github.com/mfem/mfem into tmopupdate-kershawtransform 2022-09-28 08:16:06 -07:00
Ketan Mittal 1349842c5b minor 2022-09-28 08:15:57 -07:00
Vladimir Z Tomov 64dee7ba0b Minor 2022-09-27 17:40:51 -07:00
Mark L. Stowell 7d62e0f7e6 Merge pull request #3152 from mfem/additional-curl-integrators
Additional integrators
2022-09-27 17:37:18 -07:00
Will Pazner d54d2543eb Change performance ex1 compiler flags for Apple M1 2022-09-27 10:59:41 -07:00
Socratis Petrides 2bbe5fb8f4 Merge branch 'master' into additional-curl-integrators 2022-09-27 10:19:25 -07:00
Tzanio Kolev 4a069397a4 Merge pull request #3105 from mfem/yohann/dg-amr-opt
Optimize and benchmark nonconforming matrix-free DG.
2022-09-26 14:30:06 -07:00
Tzanio Kolev e95a608766 Merge pull request #3148 from mfem/ComplexDenseMatrix
Complex dense matrix
2022-09-26 14:29:40 -07:00
0ae7ae87e1 feature/tsuji1/constraints (#3117)
* Added build directly to gitignore

* First cut at mfem windows build

* Adding windows build files

* Fixed relative path issue

* Remove cmake rebuild from mfem project, fix filters issues with ms

* Response to Review, making sure it builds for different windows build types

* Windows build fixes

* Cleaning up the build fixes

* Fixing .gitignore for some of the newer packages

* Fixing code for MSVC Compiler in preperation for NVCC build

* Upgrade to latest VS2017

* commit after merge

* Tweeks

* Fix ordering of help options, protect agains not having SNLS in main code

* Fixed windows build

* more project files

* Move Eng_Matmodel under class form, remove some errors/warnings in RDG

* Response to review 5

* Fix accidentally deleted constructor

* Windows build fixes; further refactoring of .vcxproj files

* Added FindHDF5.cmake file to mfem

* Added time, time step, and cycle to conduit data collection

* Further compatibility fixes, Allowing non-chemical materials to use region inflow, updating documentation

* Fix merge

* Adding a preprocessor definition for hypre.

* Update mfem project

* Update project

* Fix typos in mfem project

* Update MFEM HYPRE version

* Split mfem projects

* Update projects

* Update projects

* Update projects

* More tweaks for windows  build

* Fix tribol and mfem build on windows

* Fix hypre and mfem projects

* Fix tribol project; add opac gitignore

* Update project for new mfem version

* Update mfem build to import umpire target so that camp can be found; add empty lapack include directory that is required if mfem config files are used

* Fix to mfem for new umpire

* Update Windows project files

* Undo changes to windows project files

* Update windows project files

* Fix all windows configurations for several libraries

* Fix CMake error in MFEM

* Adding functions to set another preconditioner, instead of BoomerAMG.
Adding EliminationGMRESSolver and PenaltyGMRESSolver to use GMRES
instead of CG.

* Adding some functions to get the number of iterations and residual norm
from Hypre solvers.

* Adding two lines to return the right residual and convergence information.

* Adding some functionality to choose the preconditioner for the SchurConstrainedHypreSolver.

* Vectorizing the penalty function, as we can have different penalty values
for each constraint equation.

* We should initialize a diagonal HypreParMatrix here, instead of trying
to do row scalings.

* Adding some functions to the Hypre solver classes to set parameters.

* Whoops, this function should be for logging.

* Make this a multiplication by a diagonal SparseMatrix.

* Memory fix for SuperLU solver. This passes the address sanitizer now.

* Update to VS2022 and Intel oneAPI (with some Intel Classic)

* Fixing the Windows build for MFEM.

* Applying the change to include directories to all builds.

* Fixing undefined references for MFEM.

* make style

* Fix copyright

* Fix hidden overload

* Fixing the hidden overload here.

* Some fixes to the Windows build, after adding the SuperLU_Dist option.

* Fix MFEM build

* Update .gitignore

* fix windows build issues

* Removing dead code, adding comments.

* Consistend FindHDF5.cmake (and don't mention ALE3D)

* Rename property sheets to more consistent pattern

* Moving some things around gitignore, moving the Win32 directory to config.
Changing the relative directory structure in the project files after moving
the directory.

* Adding a function to allow for parallel symbolic factorization.

* Editing the CHANGELOG and INSTALL files.

* Editorial updates

* Remove config/Win32 (will be maintained externally)

Co-authored-by: Jamie A. Bramwell <bramwell1@llnl.gov>
Co-authored-by: Albert L. Nichols, III <nichols5@llnl.gov>
Co-authored-by: Arlie Capps <capps2@llnl.gov>
Co-authored-by: Patrick Greene <greene30@llnl.gov>
Co-authored-by: Benjamin T. Liu <liu15@llnl.gov>
Co-authored-by: Alan Dayton <dayton8@llnl.gov>
Co-authored-by: Tzanio Kolev <tzanio@llnl.gov>
2022-09-26 14:29:17 -07:00
Ketan Mittal 66874e8860 add sample run with gslib adaptivity evaluator and mesh node ordering byVDIM 2022-09-26 13:45:35 -07:00
Vladimir Z Tomov 35db31402e minor 2022-09-26 12:54:32 -07:00
Vladimir Z Tomov 145539f4ab Simplified function parameters. All calls to these functions are internal,
we don't expect any issues.
2022-09-26 12:48:02 -07:00
Will Pazner 1f18293a2f Use clearer variable name 2022-09-26 10:50:30 -07:00
Will Pazner 6b38f5c46c Fix typos 2022-09-26 10:49:38 -07:00
Ketan Mittal cc09a3f428 fix CMakeLists 2022-09-22 19:34:49 -07:00
Ketan Mittal 5de599cef2 wordsmithing 2022-09-22 15:34:55 -07:00
Ketan Mittal 1e455ad4b0 add option to use Kershaw transformation in mesh-explorer 2022-09-22 15:27:15 -07:00
Ketan Mittal c17ea3b614 Merge branch 'master' of https://github.com/mfem/mfem into tmopupdate-kershawtransform 2022-09-22 11:14:56 -07:00
Ketan Mittal 0043957876 minor 2022-09-22 11:14:29 -07:00
Tzanio Kolev 23301d2223 Merge pull request #3133 from mfem/quadrature-coeff-lor
Support general coefficient types in batched LOR
2022-09-22 08:53:27 -07:00
Tzanio Kolev 9e6711d016 Merge pull request #3224 from mfem/boundary-lininteg-face-quadrature-space
Use FaceQuadratureSpace in device boundary linear forms
2022-09-22 08:53:17 -07:00
Chris Vogl 3a80ea1bde updated changelog with comments on encapsulation via removal of deprecated NVector functions 2022-09-21 14:00:51 -07:00
Chris Vogl f36aa1aece corrected SUNLinSolSPFGMR wrapper to use SPFGMR instead of SPGMR 2022-09-21 13:47:40 -07:00
Chris Vogl 4dd7becd3e removed unnecessary include in hypre.cpp 2022-09-21 13:45:59 -07:00
Chris Vogl 8ce6a04707 need default construct for dummy SundialsMemHelper when CUDA is not enabled 2022-09-21 13:45:39 -07:00
Tzanio Kolev e807d1ebd6 HTTP for the METIS webpage 2022-09-21 13:21:20 -07:00
Vladimir Z Tomov 3378b79a23 Moved check-tmop-metric to miniapps/tools. 2022-09-21 11:39:36 -07:00
Vladimir Z Tomov 5fe52fbddc changelog. 2022-09-21 11:25:52 -07:00
Vladimir Z Tomov a5da5734c2 Addded metric 360. 2022-09-21 11:22:54 -07:00
Tzanio Kolev 765918a611 Merge pull request #3178 from mfem/memory-movement-fixes
Improve memory movement in CheckFinite & DenseTensor(k)
2022-09-20 18:49:46 -07:00
Tzanio Kolev bc6996c885 HTTP for the METIS webpage 2022-09-20 17:37:32 -07:00
Tzanio Kolev b80755ab02 Merge branch 'master' into mfem-4.5-dev 2022-09-20 17:36:22 -07:00
Will Pazner 90257baa43 Merge remote-tracking branch 'origin/master' into linear-form-ext-fixes
# Conflicts:
#	fem/linearform.cpp
#	tests/unit/fem/test_linearform_ext.cpp
2022-09-20 12:05:39 -07:00
Will Pazner 0cd4f4456a Use FaceQuadratureSpace in device boundary linear forms 2022-09-20 10:47:17 -07:00
Ketan Mittal 2f077ea9a0 add kershaw transformation 2022-09-20 09:39:17 -06:00
Tzanio Kolev 5cedebaa75 Merge pull request #3201 from mfem/ceed-mixedint-fix
Fix errors building with libCEED and hypre mixed int
2022-09-19 14:26:16 -07:00
Tzanio Kolev ae597b46a0 Mention mfem.org/building in INSTALL 2022-09-19 14:22:32 -07:00
Will Pazner 42c87f3baa Update CHANGELOG 2022-09-19 13:11:11 -07:00
Socratis Petrides 1b79a1e12e Fix comment 2022-09-18 19:41:31 -07:00
Will Pazner 100caf5200 Support general coefficient types in batched LOR 2022-09-16 20:43:09 -07:00
Will Pazner 110f92a1d6 Merge pull request #3196 from mfem/metis-mirror
Use MFEM's METIS mirror instead of glaros.dtc.umn.edu
2022-09-16 20:41:54 -07:00
Socratis Petrides c9c50fadd3 adding missing comment 2022-09-16 20:25:07 -07:00
Socratis Petrides c72d37b764 minor 2022-09-16 20:01:37 -07:00
Socratis Petrides 542a8a6722 adding bounds checks 2022-09-16 19:53:16 -07:00
Socratis Petrides a6a7d2d5d7 adding block symmetric convention 2022-09-16 19:52:58 -07:00
Tzanio Kolev ede5bed103 Merge pull request #2920 from mfem/feature/submesh
SubMesh
2022-09-16 17:05:14 -07:00
Tzanio Kolev ba01aecddc Merge pull request #3066 from mfem/face-quadrature-space-coefficient
FaceQuadratureSpace
2022-09-16 16:59:28 -07:00
Socratis Petrides 28d9f4ba5b minor 2022-09-16 15:44:52 -07:00
Will Pazner e03a7fef41 Return ElementRestrictionOperator* from FiniteElementSpace::GetElementRestriction 2022-09-16 11:29:09 -07:00
Yohann aacc37c175 Revert change to google benchmark makefile. 2022-09-16 15:51:42 +02:00
Yohann d763963c24 Fix documentation. 2022-09-16 15:47:01 +02:00
Tom Stitt e046185ca7 switch to T* Memory version so we can set own=false
add const GetData
2022-09-15 13:35:18 -07:00
camierjs 2a04311099 LOR H1/ND/RT explicit specializations 2022-09-15 07:28:55 -07:00
Tzanio Kolev c6bb7c2af9 Updates after the metis page came back up 2022-09-14 08:01:37 -06:00
camierjs 026c2ae2dd Add lor_h1 batched kernel for order 1 2022-09-13 17:26:27 -07:00
Will Pazner b9de6d2b37 Fix issue with memory reuse 2022-09-13 12:56:41 -07:00
Tzanio Kolev cea9fceb5c Merge pull request #3195 from mfem/hypreams-mem-leak-fix-tk
Suggested changes in PR 3096
2022-09-13 06:25:47 -07:00
Tzanio Kolev 2b9295db34 Copy *.mesh files in miniapps/multidomain for out-of-source builds 2022-09-13 07:13:53 -06:00
Yohann a747f49ec7 Remove unnecessary InPlace. 2022-09-12 18:22:17 +02:00
Yohann d31979c02e Add InPlace to methods doing "in place" computations. 2022-09-12 17:12:23 +02:00
Tzanio Kolev c07bc1d90d Multidomain miniapp improvements 2022-09-11 17:29:33 -07:00
Tzanio Kolev 8daadc97d0 correct multidomain-hex.mesh location in tests/unit/mesh/test_psubmesh 2022-09-11 15:23:49 -07:00
Tzanio Kolev ee7c345081 minor 2022-09-11 14:50:18 -07:00
Tzanio Kolev 361c32362b Merge pull request #3126 from mfem/dg-mass-inv
Local PCG for DG mass inverse on GPU
2022-09-10 13:40:45 -07:00
Tzanio Kolev dfa9b7e85b Merge pull request #3177 from mfem/lor-vdim-ordering
Match ordering in LOR with vdim > 1
2022-09-10 13:38:14 -07:00
Will Pazner b171645d17 Merge pull request #3134 from luzpaz/typos
Fix various typos
2022-09-09 13:49:35 -07:00
Will Pazner 74a04838fa Merge remote-tracking branch 'origin/master' into typos 2022-09-09 09:57:48 -07:00
Will Pazner 62eda9466d Merge pull request #3127 from mfem/yohann/check-diag-poplicy
Check for consistent diagonal policy in `FABilinearFormExtension::EliminateBC`
2022-09-09 09:55:01 -07:00
Will Pazner 621081b3a8 Merge pull request #3183 from mfem/yohann/fix-markers
Bugfix in `linearform`
2022-09-09 09:54:08 -07:00
Tzanio Kolev 9bc9cdca17 Merge pull request #3144 from mfem/bdr-linear-form
Support boundary linear forms on device
2022-09-09 08:59:32 -07:00
Will Pazner e14b47e12f Fix errors building with libCEED and hypre mixed int 2022-09-08 21:06:36 -07:00
Will Pazner 1cca575225 Merge remote-tracking branch 'origin/lor-gpu' into lor-gpu 2022-09-08 16:42:02 -07:00
Will Pazner a44abee1ba Fix some issues with CEED 2022-09-08 16:33:48 -07:00
Will Pazner 55497c158f Add script to run AMR case 2022-09-08 16:33:14 -07:00
Veselin Dobrev b1a1c8cd17 Initial commit in v4.5 branch, mfem-4.5-dev 2022-09-08 13:45:22 -07:00
Tucker Babcock c45e6d12e6 make style 2022-09-08 16:42:31 -04:00
Tucker Babcock b2bb31ac8d modify ex3p so show the memory leak, and show that this fixes it. 2022-09-08 16:41:55 -04:00
Tucker Babcock 1fecc8d768 add option preserving memory leak fix, and use it if the hypre version allows 2022-09-08 16:41:07 -04:00
Will Pazner 0051469216 Update CHANGELOG 2022-09-07 15:43:33 -07:00
Ketan Mittal aa37d19f21 Merge branch 'master' of https://github.com/mfem/mfem into gslib-node-ordering 2022-09-07 15:30:11 -07:00
Ketan Mittal b50c494e8b grab fes_ordering from fes/pfes in AdaptivityEvaluator 2022-09-07 15:30:00 -07:00
Tzanio Kolev 26b4980060 Merge branch 'hypreams-mem-leak-fix' into hypreams-mem-leak-fix-tk 2022-09-07 14:59:56 -07:00
Tzanio Kolev 4f688f6c66 Merge branch 'master' into hypreams-mem-leak-fix-tk 2022-09-07 14:54:33 -07:00
Tzanio Kolev afe40bfb9f Merge branch 'master' into hypreams-mem-leak-fix 2022-09-07 14:53:42 -07:00
Tzanio Kolev 39a4b07641 Switch METIS homepage in vcpkg to their GH repo 2022-09-07 13:29:58 -07:00
Cody J. Balos 0142bb7c81 Address undef. behavior from 'recursive' init of singleton
According to the standard, recusrive initialization of a static
object is undefined. Some compilers handle it fine, but XL does not.

Also ensure that only one instance of Sundials class instantiated.
2022-09-07 12:00:03 -07:00
Tzanio Kolev 520790b25f Use MFEM's METIS mirror 2022-09-07 11:36:36 -07:00
Will Pazner 256ee6c1b5 Fix signed integer comparison 2022-09-07 11:29:12 -07:00
Will Pazner dc829768ad Fix issues handling boundary elements and faces in LinearFormExtension 2022-09-07 11:23:33 -07:00
Will Pazner ea2a9676c1 Use mesh face numbering for boundary element attributes in LinearFormExtension 2022-09-07 10:32:53 -07:00
Will Pazner 96e1b7d4a0 Make sure to accumulate boundary integrators in LinearFormExtension 2022-09-07 10:32:31 -07:00
Tzanio Kolev be8eaf6900 Merge pull request #3185 from mfem/cmake-lapack-blas-fix
Fix the link order of BLAS and LAPACK in CMake
2022-09-07 07:32:26 -07:00
Tzanio Kolev be2874c3e4 Suggested changes in PR 3096 2022-09-06 19:01:59 -07:00
Will Pazner e0d8ee2bcd Better host/device memory management in QuadratureFunction::GetValues 2022-09-06 17:00:08 -07:00
Socratis Petrides 59e8f98684 fic DivDiv unit test 2022-09-06 16:27:57 -07:00
Socratis Petrides c1ec08f5c0 addressing reviewer's comments 2022-09-06 15:55:17 -07:00
Socratis Petrides a2d5a9c350 fix documentation for MixedCurlIntegrator 2022-09-06 15:55:17 -07:00
Socratis Petrides bbab6f72a2 style 2022-09-06 15:55:17 -07:00
Socratis Petrides eadc1127cd forgotten test case name 2022-09-06 15:55:17 -07:00
Socratis Petrides 4c0893feef 3D curlintegrator unit tests 2022-09-06 15:55:17 -07:00
Socratis Petrides f2c013725f 2D curl unit tests 2022-09-06 15:55:17 -07:00
Socratis Petrides 80ff956840 ComputeCurl fix in densmat 2022-09-06 15:55:17 -07:00
Socratis Petrides 8b4546a758 fix assert 2022-09-06 15:55:17 -07:00
Socratis Petrides b959fdd961 remove empty lines 2022-09-06 15:55:17 -07:00
Socratis Petrides 4dee85fc93 fix sign in NormalTraceJump 2022-09-06 15:55:16 -07:00
Socratis Petrides cfc743e2e0 fix compiler issue 2022-09-06 15:55:16 -07:00
Socratis Petrides 8c70106578 AssembleElementMatrix2 for DivDivIntegrator 2022-09-06 15:55:16 -07:00
Socratis Petrides 8fc8bbcfea AssembleElementMatrix2 for CurlCurlIntegrator 2022-09-06 15:55:16 -07:00
Socratis Petrides af4798341f adding MixedCurlInitegrator 2022-09-06 15:55:16 -07:00
camierjs 39185e89bc Bring simplified lor_h1 kernel 2022-09-06 10:10:59 -07:00
Socratis Petrides 0d71c27210 resolving conflicts with master 2022-09-05 12:15:57 -07:00
Socratis Petrides 7c7370fdc1 resolving conflicts with master 2022-09-05 11:37:22 -07:00
Tzanio Kolev 502d2f5dc7 Merge pull request #3149 from mfem/blockmatrix-util
BlockMatrix additional utilities
2022-09-03 20:47:01 -07:00
Tzanio Kolev 07048928a2 Merge pull request #3159 from mfem/white238/remove_unnecessary_ifs
Remove some now unnecessary if statement
2022-09-03 20:40:11 -07:00
Veselin Dobrev 5180b3f92e Revert changes in Mesh::GetLocalTriToTetTransformation() and
Mesh::GetLocalQuadToHexTransformation().

To address the issue seen when calling
Mesh::GetBdrElementAdjacentElement() followed by calling
Mesh::GetLocalFaceTransformation(), introduce a new method,
Mesh::GetBdrElementAdjacentElement2() that returns the orientation
of the face element w.r.t. the boundary element. This orientation
then produces the desired result when used with
Mesh::GetLocalFaceTransformation().
2022-09-02 18:57:43 -07:00
Will Pazner 39c4c47993 Support new QuadratureSpace in libCEED interface 2022-09-02 16:13:39 -07:00
Will Pazner 118a28aec4 Fix comment 2022-09-02 16:09:15 -07:00
Will PaznerandYohann Dudouit 89b71a2a52 Replace some MFEM_ASSERT with MFEM_VERIFY
Co-authored-by: Yohann Dudouit <dudouit1@llnl.gov>
2022-09-02 16:09:10 -07:00
Will Pazner cc6b3c025d Merge remote-tracking branch 'origin/quadrature-coeff-lor' into lor-gpu 2022-09-02 16:02:17 -07:00
Will Pazner e2be4b8d9b Merge remote-tracking branch 'origin/face-quadrature-space-coefficient' into lor-gpu 2022-09-02 16:01:54 -07:00
Veselin Dobrev f7fcfe18f6 Update const-ness to match the new const result of the method
GroupCommunicator::GetGroupTopology().
2022-09-02 14:53:51 -07:00
Julian Andrej 4d43eb13eb remove const from returned object 2022-09-02 11:10:02 -07:00
Will Pazner 120963609b Fix comment 2022-09-02 08:12:56 -07:00
Will PaznerandYohann Dudouit ea310df39d Replace some MFEM_ASSERT with MFEM_VERIFY
Co-authored-by: Yohann Dudouit <dudouit1@llnl.gov>
2022-09-02 08:06:49 -07:00
Will Pazner bae885021f make style 2022-09-01 17:01:11 -07:00
Will Pazner 798f529929 NVTX 2022-09-01 16:57:28 -07:00
Tzanio Kolev b3be2d347f Merge branch 'master' into feature/submesh 2022-09-01 14:49:56 -07:00
Tzanio Kolev 1fd1217962 Merge branch 'master' into white238/remove_unnecessary_ifs 2022-09-01 14:42:18 -07:00
Veselin Dobrev 2d4c32a19c In CMakeLists.txt, switch the order of BLAS and LAPACK in the
dependencies list to get correct link line order.
2022-09-01 14:10:06 -07:00
Yohann Dudouit caa79bf801 feedback from @pazner 2022-08-31 17:17:18 -07:00
Yohann Dudouit a3392192f2 Remove whitespace... 2022-08-31 16:55:32 -07:00
Yohann Dudouit 93a7fc37e2 Avoid using non-const array accessor. 2022-08-31 16:49:53 -07:00
Stefano Zampini 04afec9eda remove unused variable 2022-08-31 10:49:11 +03:00
Stefano Zampini 589eefedfb Add block size support 2022-08-31 10:48:57 +03:00
Socratis Petrides ba5d2a6152 fix EliminateRowCols 2022-08-30 19:16:29 -07:00
Will PaznerandYohann 2dba5efb09 Fix typo in comment
Co-authored-by: Yohann <dudouit1@llnl.gov>
2022-08-30 10:30:59 -07:00
Will Pazner db5441c44c Fix bad resolution of merge conflict 2022-08-30 10:28:51 -07:00
Socratis Petrides 601df01c8f Merge branch 'master' into blockmatrix-util 2022-08-29 17:50:36 -07:00
Socratis Petrides 882ee134c2 Merge branch 'master' into ComplexDenseMatrix 2022-08-29 17:49:46 -07:00
Socratis Petrides 2b2c755405 reverting change in GradToCurl. To be handled by the CurlIntegrators PR 2022-08-29 17:48:10 -07:00
Chris Vogl 3adeb1d4f8 adding missed SUNContext variables to CUDA calls 2022-08-29 14:28:33 -07:00
Will Pazner 93fc7cf608 Match ordering in LOR with vdim > 1 2022-08-29 13:45:26 -07:00
Veselin Dobrev 4edfc95acc Merge pull request #3175 from mfem/tmop-MemLeakFix
Fix memory leak in TMOP metric
2022-08-29 13:10:31 -07:00
Tom Stitt 68473f6fca HostRead() instead of GetData() in CheckFinite
don't use non-const method from const operator()(k) so we can avoid unnecessary HostReadWrites
2022-08-29 12:58:20 -07:00
Will Pazner 72e5222a98 make style 2022-08-27 17:13:45 -07:00
Will Pazner db9772acd4 Bench LOR AMS and ADS 2022-08-27 17:13:05 -07:00
Will Pazner 7a09a3d772 Reuse memory in discrete gradient and curl 2022-08-27 17:12:52 -07:00
Will Pazner 45402504ea Allow memory reuse in FormLORVertexCoordinates 2022-08-27 17:12:34 -07:00
Ketan Mittal 17dbc28b51 fix memory leaks 2022-08-26 14:06:13 -07:00
Ketan Mittal 1298289bd4 update changelog 2022-08-25 17:31:10 -07:00
Ketan Mittal aecde778ed Merge branch 'master' of https://github.com/mfem/mfem into gridfunc-gettruevec-fix 2022-08-25 17:22:25 -07:00
Will Pazner 24fd0b1c1e Reuse memory in LOR benchmarks 2022-08-25 13:32:31 -07:00
Chris Vogl 42f9c6dbf4 Update linalg/sundials.cpp
add comment to preprocessor directive
2022-08-25 13:02:34 -07:00
Chris Vogl 672e477364 Update linalg/sundials.cpp
add comment to preprocessor directive
2022-08-25 13:02:25 -07:00
Chris Vogl 00f7b2bd02 applied astyle changes 2022-08-25 12:25:21 -07:00
Chris Vogl 1cd2ff2364 GitHub tests noted a mispelling 2022-08-25 12:22:45 -07:00
Chris Vogl 95c570b001 removed unused definition in hypre 2022-08-25 12:13:27 -07:00
Chris Vogl 4803dfa020 applied astyle changes 2022-08-25 12:04:57 -07:00
Chris Vogl 9b8d063584 added comments 2022-08-25 11:43:50 -07:00
Will Pazner 59fa852dc6 ND, RT, AMS, ADS LOR benchmarking 2022-08-25 11:40:52 -07:00
Chris Vogl fa50d81410 used namespaces to help differentiate C and C++ functions 2022-08-25 11:11:08 -07:00
Tzanio Kolev 5150ab71e9 Merge pull request #3161 from prathamgit/master
Minor change in output message in linalg/sparsemat.cpp
2022-08-25 09:21:24 -07:00
Chris Vogl 635e3de561 overloaded SUNDIALS >= v6 calls for backwards compatibility 2022-08-24 16:57:53 -07:00
Will Pazner eee4d9c25c Specializations 2022-08-24 14:18:43 -07:00
Chris Vogl ff1e52c56a moved definition of SundialsMemHelper to sundials.hpp so the sunmemHelper can be added to the singleton Sundials class instead of being a global variable 2022-08-24 14:15:52 -07:00
Will Pazner 218c56945d Add AMG to benchmarks 2022-08-24 13:56:30 -07:00
Will Pazner 7d31215c91 LOR benchmark 2022-08-24 13:37:17 -07:00
Will Pazner f378aed68d gitignore 2022-08-24 13:37:08 -07:00
Will Pazner e4318fe0fb Increase MD and MQ limits 2022-08-24 13:36:10 -07:00
Will Pazner c504463321 Add warm up in LOR benchmark 2022-08-24 12:00:13 -07:00
Will Pazner cba110b1bc Reuse memory in LOR assembly 2022-08-24 12:00:02 -07:00
Will Pazner 474aa14907 Work on LOR benchmark 2022-08-24 11:40:17 -07:00
Chris Vogl e03ff5825d removed definitions of removed deprecated functions 2022-08-24 10:27:17 -07:00
Chris Vogl 3adde968e4 removed deprecated Vector::ToNVector() 2022-08-24 10:25:57 -07:00
Chris Vogl 0bbeb2cf65 removed deprecated Vector::ToNVector()... user should instead use SundialsNVector(double*, int) 2022-08-24 10:24:53 -07:00
Chris Vogl 6b800d16f4 removed deprecated Vector(N_Vector)... user should instead us SundialsNvector(N_Vector) 2022-08-24 10:24:14 -07:00
Will Pazner 86265d0848 Output total number of elements in plor_solvers 2022-08-24 09:48:21 -07:00
Will Pazner 152cae0c0e Don't add NVTX for early-return hypre setup 2022-08-24 09:47:49 -07:00
Will Pazner f98c2b9df5 Ignore more nsys files 2022-08-24 09:47:20 -07:00
Chris Vogl 0c77c3535a corrected SUNContext return code and shortened error message 2022-08-24 08:03:40 -07:00
Chris Vogl 7457eeea1a added call to Sundials::Init to all Sundials examples 2022-08-23 19:50:05 -07:00
Chris Vogl eff25a6b30 refactor deprecated calls to enum Butcher table values in Sundials examples 2022-08-23 19:46:37 -07:00
Chris Vogl 80fd02ffbf refactor of Sundials singleton to use static construction like Hypre singleton 2022-08-23 19:43:14 -07:00
Tzanio Kolev 067afacfb4 Merge branch 'master' into yohann/dg-amr-opt 2022-08-23 17:25:44 -07:00
Tzanio Kolev f2b7d6f020 Merge branch 'master' into white238/remove_unnecessary_ifs 2022-08-23 17:21:45 -07:00
Chris Vogl 413d860ea6 added first draft of Sundials singleton for SUNContext and updated all calls into Sundials 2022-08-23 17:13:22 -07:00
Chris Vogl 73bbfda158 using enum types ARKODE_DIRKTableID and ARKODE_ERKTableID instead of int to avoid permissive errors 2022-08-23 17:12:42 -07:00
Veselin Dobrev 687f20e52c Merge pull request #3162 from mfem/lgtm-to-codeql
Replace LGTM static analysis with GitHub code scanning
2022-08-23 15:28:06 -07:00
Chris Vogl 88f5d5a0ca commented out deprecated ToNVector wrappers... will decide whether to support or not later 2022-08-23 15:18:35 -07:00
Will Pazner 049ba615b3 Don't compute error unless also visualizing 2022-08-23 15:00:17 -07:00
Will Pazner 3f8c7aa5e1 Ignore nsys-rep files 2022-08-23 14:55:30 -07:00
Will Pazner dd6164a9b4 Separate AMG setup in plor_solvers 2022-08-23 14:54:19 -07:00
Will Pazner 6974ebd250 Turn off visualization by default in plor_solvers 2022-08-23 14:39:36 -07:00
Will Pazner 947c51ff75 NVTX instrumentation 2022-08-23 14:39:24 -07:00
Tzanio Kolev 448851a07e Merge pull request #3039 from mfem/ComputeL2Errors
Compute l2 errors
2022-08-23 12:49:34 -07:00
Will Pazner 5352a2d910 Move host device kernel functions into internal namespace 2022-08-23 12:44:50 -07:00
Tzanio Kolev 0040a7bc0e Keep the log from upgrading Doxygen configuration 2022-08-23 12:37:01 -07:00
Yohann Dudouit 60de1d3102 Improve documentation. 2022-08-23 10:41:55 -07:00
Will Pazner d754cf4914 Add LOR benchmark 2022-08-23 07:49:44 -07:00
Will Pazner 5aa5cb551e Add debug.hpp and nvtx.hpp 2022-08-23 07:48:54 -07:00
Tzanio Kolev e3d9b0a649 Fixed wrong commit 2022-08-22 18:23:59 -07:00
Tzanio Kolev 2b15362ec5 Reverted to old version of doxygen configuration 2022-08-22 18:20:43 -07:00
Socratis Petrides 457c3ad80b review comments 2022-08-22 16:24:21 -07:00
Tzanio Kolev a44e27583c Addressed Veselin's comment 2022-08-22 15:59:24 -07:00
Tzanio Kolev 2c2d7161bc Switching to ubuntu/macos/windows-latest in GHA 2022-08-20 14:34:09 -07:00
Socratis Petrides c0fcb7680e fix unit test 2022-08-20 10:30:54 -07:00
Socratis Petrides 010327a950 fix unit test 2022-08-20 10:15:04 -07:00
Will Pazner cfb46e8db9 Exchange face neighbor data in ParMesh::GetNFbyType 2022-08-19 22:53:19 -07:00
Will Pazner a8b3dded79 Use variable coefficients in linear form extension unit tests 2022-08-19 21:48:49 -07:00
Will Pazner dca1206af6 Handle lexicographic permutation in boundary linear form extension 2022-08-19 21:46:30 -07:00
Tzanio Kolev 3c5cb60b6c Fixes for ubuntu-22.04 2022-08-19 19:13:27 -07:00
Tzanio Kolev afe229f744 Switch to ubuntu-22.04. Better Actions names. 2022-08-19 17:45:45 -07:00
Socratis Petrides 5819549ca4 Merge branch 'master' into blockmatrix-util 2022-08-19 17:12:59 -07:00
Socratis Petrides 5e540807cf Merge branch 'master' into ComplexDenseMatrix 2022-08-19 17:11:56 -07:00
Tzanio Kolev 662c97b7f1 Create codeql-analysis.yml 2022-08-19 16:52:45 -07:00
Will Pazner 59074421dc Merge remote-tracking branch 'origin/master' into dg-mass-inv 2022-08-19 16:29:02 -07:00
Will Pazner bba7bc2181 Merge remote-tracking branch 'origin/master' into linear-form-ext-fixes 2022-08-19 16:28:52 -07:00
Will Pazner 86911f0e26 Merge remote-tracking branch 'origin/master' into bdr-linear-form 2022-08-19 16:28:15 -07:00
Veselin Dobrev 641078645f Merge pull request #3155 from mfem/metis-vcpkg
Windows CI METIS workaround
2022-08-19 16:27:04 -07:00
Prathamesh Sirmalla @lab_pc 1f3d8a051c Minor change in output message in linalg/sparsemat.cpp 2022-08-19 15:38:25 -05:00
Will Pazner 3a85cae085 Change CRLF to LF line endings 2022-08-19 11:39:38 -07:00
Yohann Dudouit 2d135c4df5 Merge branch 'master' into yohann/dg-amr-opt 2022-08-19 10:47:31 -07:00
Tzanio Kolev 39fb7d6f0c Merge pull request #3151 from mfem/disable-fa-runs-ex1
Temporarily disable the FA sample runs in ex1/ex1p
2022-08-19 08:32:08 -07:00
Tzanio Kolev ee3216d8ff Merge pull request #3154 from mfem/lor-vdim
Support vdim in LOR solvers
2022-08-19 08:04:44 -07:00
Chris White f8ca9430da remove a now unnecessary if statement 2022-08-18 16:42:53 -07:00
Will Pazner f29f07ff87 Use custom metis vcpkg portfile 2022-08-18 16:41:21 -07:00
Will Pazner caff2c1ce3 Add DGMassInverse::Update 2022-08-18 15:03:28 -07:00
Tzanio Kolev 1db3de8fee Merge pull request #3145 from mfem/paraview-ascii-fix
Fix ParaView ASCII output
2022-08-17 11:31:43 -07:00
Tzanio Kolev 30abb73143 Minor 2022-08-17 11:30:01 -07:00
Will Pazner 5f3219cb06 Support vdim in LOR solvers 2022-08-17 10:06:18 -07:00
Veselin Dobrev da2b481c5b Temporarily disable the FA sample runs in ex1/ex1p due to
non-deterministic behavior.
2022-08-16 15:03:08 -07:00
Ketan Mittal 57f6f0d842 fix doxygen comments 2022-08-16 12:06:04 -07:00
Socratis Petrides 57aa5aaae8 remove unused variable 2022-08-16 11:58:10 -07:00
Socratis Petrides 1ab976992b style 2022-08-16 11:45:00 -07:00
Socratis Petrides ebf4d2e737 adding unit tests 2022-08-16 11:44:30 -07:00
Socratis Petrides 7917bc401f fix eliminaterowcols to work with general matrices 2022-08-16 11:44:03 -07:00
Vladimir Z Tomov 48152fdeac Merge branch 'master' into tmop-update3D 2022-08-16 11:11:26 -07:00
Socratis Petrides 639ca8f06a ParMult and ParAddMult 2022-08-16 09:50:33 -07:00
Socratis Petrides aef437100a Eliminate RowCols for blockmatrix 2022-08-16 09:48:26 -07:00
Socratis Petrides c0fff78f17 adding block operator types 2022-08-16 09:45:05 -07:00
Socratis Petrides e1e338fb86 return operator type 2022-08-16 09:43:27 -07:00
Julian Andrej e31e82cb0b Merge branch 'master' of github.com:mfem/mfem into feature/submesh 2022-08-16 09:40:19 -07:00
Julian Andrej 41e7162fbd review changes 2022-08-16 09:07:08 -07:00
Socratis Petrides 972243cfca Cmake fix 2022-08-15 20:50:04 -07:00
Socratis Petrides 63ba80fafe fixing shadow veriables 2022-08-15 18:20:53 -07:00
Socratis Petrides 0f582d0589 style 2022-08-15 17:48:32 -07:00
Socratis Petrides 5fd163b2db more comments edits 2022-08-15 17:44:48 -07:00
Socratis Petrides e6303f75ab comments edits 2022-08-15 17:44:31 -07:00
Socratis Petrides e008828901 forgotten comma 2022-08-15 16:56:23 -07:00
Socratis Petrides 2a3649970f additional vector util 2022-08-15 16:55:26 -07:00
Socratis Petrides a386076012 unit tests for complex_densemat 2022-08-15 16:55:12 -07:00
Socratis Petrides 3bc2c884e5 complex_densemat implementations 2022-08-15 16:54:37 -07:00
Socratis Petrides 4f24b51e06 complex dense mat signatures 2022-08-15 16:54:22 -07:00
Socratis Petrides 305466139f cmakelist 2022-08-15 16:53:57 -07:00
Socratis Petrides 3e4c755cd9 densmat additional utilities 2022-08-15 16:52:47 -07:00
Socratis Petrides 903e1cd5fb densmat additional util signatures 2022-08-15 16:52:34 -07:00
Vladimir Z Tomov 515e66f052 style 2022-08-15 14:15:08 -07:00
Vladimir Z Tomov 1e67aeff44 minor. 2022-08-13 17:10:56 -07:00
Vladimir Z Tomov be65b60cd7 added new metrics to miniapps. 2022-08-13 17:04:21 -07:00
Vladimir Z Tomov e6661b13df Added 347. 2022-08-13 16:49:16 -07:00
Vladimir Z Tomov 41f7a7f5a8 minor improvements. 2022-08-13 16:08:46 -07:00
Vladimir Z Tomov dc12bbaa80 Added 323. 2022-08-13 12:15:23 -07:00
Vladimir Z Tomov 80362ad10f minor 2022-08-12 16:43:02 -07:00
Vladimir Z Tomov dcd359e1f2 Added code that validates metric evaluation, and its derivatives.
Added metric 322.
2022-08-12 16:41:14 -07:00
Will Pazner c14899c149 Fix ParaView ASCII output (was going to mfem::out instead of file stream) 2022-08-12 12:04:25 -07:00
Will Pazner de6bd665c7 Don't request normals when not needed in BoundaryLFIntegrator 2022-08-12 11:27:51 -07:00
Will Pazner 106964e90c Rename J to DETJ in DomainLFIntegrator 2022-08-12 11:18:51 -07:00
Will Pazner 1914d41c74 Add unit test for BoundaryNormalLFIntegrator on device 2022-08-12 10:49:12 -07:00
Will Pazner 72e0c8da8a Support BoundaryNormalLFIntegrator on device 2022-08-12 10:49:12 -07:00
Will Pazner 44dd55eee0 Make VectorConstantCoefficient::GetVec const (const-correctness) 2022-08-12 10:49:12 -07:00
Will Pazner ce8493cb1f Assemble BoundaryLFIntegrator on device 2022-08-12 10:48:50 -07:00
Will Pazner f7829f2fd8 Support boundary linear form integrators in LinearFormExtension 2022-08-12 10:48:50 -07:00
Will Pazner 293de49b1d Add test for accumulation of integrators in LinearFormExtension 2022-08-12 10:45:39 -07:00
Will Pazner c77975fa74 Properly accumulate integrators in LinearFormExtension 2022-08-12 10:45:39 -07:00
Will Pazner a0629524bb Remove unneeded if 2022-08-12 10:45:39 -07:00
Will Pazner 88b53f434d Use DETERMINANTS instead of JACOBIANS in DomainLFIntegrator 2022-08-12 10:45:39 -07:00
Will Pazner 08df351c39 Add common abstract base class for ElementRestriction operators
Include AddMultTranspose virtual member function
2022-08-12 10:34:30 -07:00
Ketan Mittal 07ea7f867d merge with master and resolve conflicts 2022-08-09 11:17:14 -07:00
Ketan Mittal 1595ab60f3 modify GetTrueVector behavior to SetTrueVector if t_vec does not already exists 2022-08-08 16:46:00 -07:00
luz paz 476c855bd7 Fix various typos
Found via `codespell -q 3 -L allright,ba,equil,esy,fo,hda,lod,nd,ned,numer,ot,pres,ro,seh,shat,solfes,strat,tbe,te,warmup`
2022-08-05 20:50:51 -04:00
Will Pazner 7ce22d38c5 Support general coefficient types in batched LOR 2022-08-05 16:30:21 -07:00
Will Pazner 80f963e77f Merge remote-tracking branch 'origin/master' into face-quadrature-space-coefficient
# Conflicts:
#	fem/fespace.hpp
2022-08-02 17:14:06 -07:00
Will Pazner 9593742ca7 QuadratureFunction comment improvements 2022-08-02 17:12:41 -07:00
Will Pazner 212dd03c80 Quadrature space documentation and interfaces fixes 2022-08-02 17:08:58 -07:00
Will Pazner f0f100b763 Add check for quadrature spaces that are invalid on mixed meshes 2022-08-02 17:08:43 -07:00
Yohann Dudouit 63599be6a6 Set diagonal policy in test_assembly_levels. 2022-08-02 13:04:10 -07:00
Yohann Dudouit e77d32c307 Replace HostRead with HostReadWrite. 2022-08-02 11:50:39 -07:00
Yohann Dudouit d0189bdf70 Add "host" reads in BilinearForm::EliminateVDofs 2022-08-01 18:07:13 -07:00
Yohann Dudouit eeff48cf5e Check that the diag policy is DIAG_ONE when FA. 2022-08-01 18:06:24 -07:00
Will Pazner b4a8e6218d Comments and clean up 2022-08-01 12:03:48 -07:00
Will Pazner 1233966f72 Fix some warnings in DGMassInverse 2022-08-01 10:47:16 -07:00
Will Pazner b93a8a6065 Only enable MFEM_UNROLL when defined(__CUDA_ARCH__) 2022-08-01 10:16:35 -07:00
Will Pazner 2eb06d7f3b Add unit test for DG mass inverse 2022-08-01 10:16:35 -07:00
Will Pazner 94eac27cbf Add local CG iteration for DG mass on device 2022-08-01 10:16:35 -07:00
Will Pazner 79ebe3395a Add overload for LoadX host device function 2022-08-01 09:18:33 -07:00
Will Pazner 4d80d2422d Factor out mass PA application into host device functions 2022-08-01 08:54:28 -07:00
Ketan Mittal 2d5e57a769 update interp miniapp to accommodate node ordering 2022-07-27 12:09:14 -07:00
Ketan Mittal cae54882f0 undo PrintAsSerial change in pmesh-optimizer from another branch 2022-07-27 11:32:16 -07:00
Vladimir Z Tomov d152dac87b Addedd metric 304. 2022-07-26 18:06:59 -07:00
Ketan Mittal 9e1fe38f85 minor changes and updated CHANGELOG 2022-07-26 15:11:42 -07:00
Ketan Mittal 939d07994c minor changes and resolve merge conflict 2022-07-25 12:06:07 -07:00
Will Pazner f18bdee153 Add FaceQuadratureSpace::Save 2022-07-14 13:52:42 -07:00
Will Pazner dea1197142 Uncomment QuadratureFunction::Save implementation 2022-07-14 13:44:27 -07:00
Will Pazner 58c353b044 Fix shadowed variable 2022-07-14 13:24:21 -07:00
Will Pazner 2991036c44 Merge remote-tracking branch 'origin/master' into face-quadrature-space-coefficient
# Conflicts:
#	fem/bilininteg_vectorfe.cpp
#	tests/unit/fem/test_pa_coeff.cpp
2022-07-14 12:54:59 -07:00
Will Pazner f73005dee0 Use CoefficientVector in DGTraceIntegrator 2022-07-14 12:28:22 -07:00
Will Pazner bad9a95479 Support FaceQuadratureSpace in QuadratureFunction::ProjectGridFunction 2022-07-14 12:28:22 -07:00
Will Pazner 378abf1257 Permute indices to lexicographic when projecting to face QuadratureFunction 2022-07-14 12:28:22 -07:00
Will Pazner 3b954ebc3c Support FaceType in FaceQuadratureSpace 2022-07-14 12:28:22 -07:00
Will Pazner bfa7dd9a8c Add Q layout to FaceQuadratureInterpolator 2022-07-14 12:28:22 -07:00
Will Pazner ade168eb9b Add MakeRef to CoefficientVector 2022-07-14 12:28:22 -07:00
Will Pazner 173abd4126 Add GetMatrix to constant matrix coefficients 2022-07-14 07:57:43 -07:00
Will Pazner 65f75f558a Combine QuadratureFunction and FaceQuadratureFunction into one class 2022-07-13 17:31:14 -07:00
Yohann Dudouit 176df9e9b4 Even more early return for RAJA. 2022-07-13 16:12:14 -07:00
Yohann Dudouit 4415519d6f More early exit for RAJA. 2022-07-12 16:02:34 -07:00
Yohann Dudouit 9f35e0cb4f Add early return for RAJA. 2022-07-12 15:14:05 -07:00
Yohann Dudouit d0bf03c14b Remove dead code. 2022-07-11 14:20:06 -07:00
Yohann Dudouit 06ebbf33ac Minor fix: implicit cast. 2022-07-11 13:54:41 -07:00
Yohann fa198d3c5a Merge branch 'master' into yohann/dg-amr-opt 2022-07-11 13:49:59 -07:00
Yohann Dudouit 2a5ab19c5a Make private methods public for nvcc. 2022-07-11 12:41:15 -07:00
Yohann Dudouit f58cf9c2a9 Small edit to bench dg amr. 2022-07-11 12:35:28 -07:00
Yohann Dudouit 5bf8eb6a40 Fix const AddMultTranspose. 2022-07-11 12:32:27 -07:00
Yohann Dudouit d920c963ff Minor. 2022-07-11 12:05:04 -07:00
Yohann Dudouit 2be47e2a36 Fix face index. 2022-07-11 11:59:50 -07:00
Yohann Dudouit 4f7a819f40 Optimize ParNCH1FaceRestriction. 2022-07-11 11:51:46 -07:00
Yohann Dudouit 3bc6f7402e Propagate new algorithm to ParNCL2FaceRestriction. 2022-07-11 11:12:25 -07:00
Yohann Dudouit 1aa5a77567 Try to iterate only on nonconforming faces.
- Attempt to make interpolation from coarse to fine less expensive at low order.
2022-06-30 14:06:16 -07:00
Yohann Dudouit c35357d447 Overload AddMultTrasnpose to prevent memcpy. 2022-06-30 13:20:58 -07:00
Yohann Dudouit afa9394200 Try different algorithm for nc faces. 2022-06-30 10:45:20 -07:00
Yohann Dudouit 18894c1b48 Fix: finish mesh initialization before fes. 2022-06-29 18:00:32 -07:00
Tucker Babcock 81e2ebdf94 address shadow field error from CI 2022-06-29 18:56:41 -06:00
Yohann Dudouit 27cbbc2e53 Fix: change probability initialization. 2022-06-29 17:00:05 -07:00
Yohann Dudouit 6e94053e29 Add bench_dg_amr benchmark. 2022-06-29 16:16:35 -07:00
Yohann Dudouit 80b6914f03 Modify default makefile to include and link google benchmark properly. 2022-06-29 16:16:07 -07:00
Tucker Babcock 840eff1834 Fix memory leak found in HypreAMS when SetOperator is called multiple times. This occurs when using HypreAMS to precondition the linear system arising in a Newton solve. The fix is based on what has been used for HypreBoomerAMG. This source of the memory leak is that in HypreSolver::Setup the underlying solver's SetupFcn would be called, if setup_called was false. SetOperator sets setup_called to true, so HYPRE_AMSSetup would be called multiple times on the same underlying solver, creating a leak. I've introduced a new function ResetAMSPrecond that is called if SetOperator is called with a valid HypreParMatrix, that destroys the old AMS solver and creates a new one based on the old solver's settings/fields. This approach is based on HypreBoomerAMG's existing ResetAMGPrecond function. 2022-06-29 17:55:00 -04:00
Will Pazner 2487dd44be Use CoefficientVector in LinearFormExtension 2022-06-10 13:39:06 -07:00
Will Pazner 49de068515 Make sure to call T.SetIntPoint 2022-06-10 13:38:54 -07:00
Will Pazner 325f27176d Merge remote-tracking branch 'origin/master' into face-quadrature-space-coefficient
# Conflicts:
#	fem/bilininteg_convection_pa.cpp
#	fem/bilininteg_diffusion_pa.cpp
#	fem/bilininteg_mass_pa.cpp
#	fem/bilininteg_vecdiffusion.cpp
2022-06-10 13:19:19 -07:00
Will Pazner f686c25d82 Fix QuadratureFunction for rho in DGTraceIntegrator 2022-06-10 12:30:21 -07:00
Will Pazner 6932fa1da3 make style 2022-06-09 15:42:43 -07:00
Julian Andrej 876612ec3e typos 2022-06-09 09:33:42 -07:00
Julian Andrej 1e83375add rely on copy elision 2022-06-08 10:37:09 -07:00
Julian Andrej 481c94a0cc Merge github.com:mfem/mfem into feature/submesh 2022-06-08 08:43:01 -07:00
Julian AndrejandJamie Bramwell 0f189e339a Update mesh/submesh/submesh.hpp
Co-authored-by: Jamie Bramwell <bramwell1@llnl.gov>
2022-06-07 12:13:51 -07:00
Julian AndrejandJamie Bramwell 3a51fdde90 Update mesh/submesh/submesh.hpp
Co-authored-by: Jamie Bramwell <bramwell1@llnl.gov>
2022-06-07 12:13:43 -07:00
Julian AndrejandJamie Bramwell 8541caf480 Update mesh/submesh/submesh.hpp
Co-authored-by: Jamie Bramwell <bramwell1@llnl.gov>
2022-06-07 12:13:36 -07:00
Nabil Atallah 1054b851bc typo in variable name 2022-06-04 21:46:35 -07:00
Nabil Atallah c72d1d480a fixed style 2022-06-04 21:41:35 -07:00
Nabil Atallah eab6e008fd uncommented weighting in ComputeLpError 2022-06-04 21:41:05 -07:00
Nabil Atallah 702d7286a2 fixed code style 2022-06-04 21:36:10 -07:00
Nabil Atallah 42b18ab365 made the pointer to the elems input variable const 2022-06-04 17:29:54 -07:00
Nabil Atallah c547c31c9f fixed the scope of the ComputeL2Error call 2022-06-04 16:16:48 -07:00
Nabil Atallah 2aa3836fff comments 2022-06-03 13:51:14 -07:00
Nabil Atallah 09e9433254 the ComputeL2Error function with &exactCoef as input and instead used the ComputeLpError function to avoid code duplication 2022-06-03 06:18:21 -07:00
Ketan Mittal 3db15e80ff Merge branch 'master' of https://github.com/mfem/mfem into gslib-node-ordering 2022-05-31 09:51:05 -07:00
Julian Andrej 1474d485cd unused variable 2022-05-26 10:18:15 -07:00
Julian Andrej 4beefd72da omit false positive unused variable 2022-05-26 08:46:05 -07:00
Julian Andrej c0508267f6 shadowed variable 2022-05-26 08:20:11 -07:00
Ketan Mittal 31113f8eda doxygen 2022-05-25 15:33:23 -07:00
Julian Andrej cf083e8f4d fixes and unit tests for 2d 2022-05-25 13:51:55 -07:00
Julian Andrej c2b6c7d2e4 L2 2022-05-25 13:51:40 -07:00
Ketan Mittal 3d5b03d232 minor 2022-05-25 12:25:29 -07:00
Ketan Mittal b38d7f022c Merge branch 'master' of https://github.com/mfem/mfem into gslib-node-ordering 2022-05-25 11:52:53 -07:00
Nabil Atallah 699f0831ea fixed typo 2022-05-24 15:01:28 -07:00
Nabil Atallah e91641abd4 instead of declaring 'double err' as a variable, renamed it to 'err_ip; in gridfunc.cpp since 'err' is already declared as a global variable 2022-05-24 14:57:36 -07:00
Nabil Atallah 874cfcbe7c fixed some tabbing inconsistencies 2022-05-24 14:44:07 -07:00
Nabil Atallah 0e807fc154 conflicted files miniapps/shifted/makefile and fem/gridfunc.hpp 2022-05-24 14:25:31 -07:00
Nabil Atallah f3d850a0be removed commented functions 2022-05-24 13:59:22 -07:00
Nabil Atallah 9f3b533692 modified the ComputeL2Error by adding an element array so that the L2 error is only computed on those 2022-05-24 12:14:32 -07:00
Ketan Mittal ff2046df93 serial miniapp sample runs 2022-05-24 11:34:08 -07:00
Ketan Mittal b055cbd8b1 minor fixes and update miniapp sample runs 2022-05-24 11:32:56 -07:00
Julian Andrej 9a8f487dfe miniapp cleanup 2022-05-24 07:46:55 -07:00
Ketan Mittal 185fc95307 tmop miniapp 2022-05-23 13:21:29 -07:00
Ketan Mittal 2d732e4984 Merge branch 'pmesh-to-serial-mesh' of https://github.com/mfem/mfem into gslib-node-ordering 2022-05-23 13:16:03 -07:00
Ketan Mittal d3ee8c0449 style 2022-05-23 12:11:59 -07:00
Ketan Mittal bf76df9b9d miniapps 2022-05-23 12:11:47 -07:00
Ketan Mittal 228d33000b style 2022-05-23 11:45:11 -07:00
Ketan Mittal 7fe27cc8be fix tmop for node ordering 2022-05-23 11:43:29 -07:00
Ketan Mittal 9ceffa0645 make style 2022-05-20 17:33:33 -07:00
Ketan Mittal 7c2afd18c1 resolve conflict and update findpts example 2022-05-20 17:28:05 -07:00
Ketan Mittal d4c293d2eb initial commit 2022-05-20 14:33:33 -07:00
Julian Andrej 4e38e2d264 revert mistake 2022-05-19 17:41:38 -07:00
Julian Andrej 5f3fdc281c documentation 2022-05-19 16:47:30 -07:00
Julian Andrej c7b8d3782c mesh directory 2022-05-19 10:12:25 -07:00
Julian Andrej 9623502afd header guard corrections 2022-05-19 09:50:40 -07:00
Julian Andrej d7e5c04159 gitignore 2022-05-19 08:40:32 -07:00
Julian Andrej 4b7cbacb28 move mesh file 2022-05-19 08:15:21 -07:00
Julian Andrej f2f82bd158 cmake lalalala 2022-05-18 15:33:56 -07:00
Julian Andrej 3b934147f6 par guard 2022-05-18 15:00:52 -07:00
Julian Andrej 5d28013f5d refactor 2022-05-18 14:41:28 -07:00
Tzanio Kolev 4fc819104b Merge branch 'master' into feature/submesh
Conflicts:
	makefile
2022-05-18 14:03:19 -07:00
Julian Andrej 4c2694a3dc add transfermap for serial submesh 2022-05-18 08:37:35 -07:00
Julian Andrej 44f25cb834 add nonconforming check 2022-05-18 08:35:48 -07:00
Nabil Atallah 9265b73024 added the sbm_aux.hpp file to the shifted miniapp makefile on line 55 2022-05-17 12:43:52 -07:00
Nabil Atallah 881dcb165c modified the ComputeL2Error by adding an element array so that the L2 error is only computed on those 2022-05-17 12:14:42 -07:00
Julian Andrej ccbd3e35b2 rename transfer map cache to avoid clash with serial version 2022-05-17 09:46:46 -07:00
Julian Andrej 52d358e29d added a transfer map cache 2022-05-17 09:41:58 -07:00
Julian Andrej f14879f704 retry to get parallel right 2022-05-16 09:33:42 -07:00
Julian Andrej bdc1a323a7 think harder about sorting 2022-04-25 15:48:35 -07:00
Julian Andrej f1ea61d5cc avoid querying non available face ids 2022-04-25 15:37:35 -07:00
Julian Andrej ca471f9421 Merge branch 'master' into feature/submesh 2022-04-25 12:37:24 -07:00
Julian Andrej 1e3ef26e5c added multidomain miniapp 2022-04-25 11:35:14 -07:00
Will Pazner acf9b51fe9 Prototype for FaceQuadratureSpace and FaceQuadratureFunction 2022-04-20 12:07:46 -07:00
Julian Andrej e1ae0fdf4f expand comment on dof order convenience function 2022-04-19 13:31:35 -07:00
Julian Andrej 87459f4240 direct transfer between two submeshes 2022-04-19 13:30:07 -07:00
Will Pazner 7d503a3dc9 Merge branch 'quadrature-function-coefficient' into face-quadrature-space-coefficient
# Conflicts:
#	fem/fespace.cpp
#	fem/fespace.hpp
#	fem/gridfunc.cpp
#	fem/gridfunc.hpp
2022-04-05 15:52:08 -07:00
Will Pazner 69c1822084 Add FaceQuadratureSpace and FaceQuadratureFunction
Also add base classes for QuadratureSpace and QuadratureFunction
2022-04-05 15:14:57 -07:00
Will Pazner 4e658ee85e Move QuadratureSpace and QuadratureFunction to their own files 2022-04-05 12:44:24 -07:00
Will Pazner 74c281cf97 Merge remote-tracking branch 'origin/master' into quadrature-function-coefficient
# Conflicts:
#	fem/bilininteg_diffusion_pa.cpp
#	fem/bilininteg_hcurl.cpp
#	fem/coefficient.hpp
2022-04-05 12:31:47 -07:00
Will Pazner fef477850e Merge remote-tracking branch 'origin/master' into quadrature-function-coefficient 2022-03-31 16:49:55 -07:00
Julian Andrej 2d515450f9 make GetVertexToVertexTable public 2022-03-30 12:45:56 -07:00
Julian Andrej 1637d1180b changelog 2022-03-30 08:27:26 -07:00
Julian Andrej bb17326582 submesh draft 2022-03-29 10:36:57 -07:00
Will Pazner 613c53d75a Use Coefficient::Project instead of Coefficient::Eval 2022-03-25 10:49:39 -07:00
Will Pazner 916af0e415 Add Coefficient::Eval(QuadratureFunction&)
With specializations for ConstantCoefficient and GridFunctionCoefficient.

Also add versions for VectorCoefficient and MatrixCoefficient.
2022-03-25 10:13:41 -07:00
Will Pazner 3ddf77d9d9 Fix virtual function partially overriden warning 2022-03-14 21:52:02 -07:00
Will Pazner 7a5446a74c Add QuadratureFunction::ProjectGridFunction 2022-03-14 21:30:27 -07:00
Will Pazner 339972daa0 Simplify CoefficientVector interface 2022-03-14 20:37:22 -07:00
Will Pazner 3ad5b4e517 Silence unused variable warning with MFEM_CONTRACT_VAR 2022-03-14 19:23:14 -07:00
Will Pazner 15b64f364e Use compressed CoefficientVector storage where supported 2022-03-14 19:12:25 -07:00
Will Pazner 463664a91d Optimize VectorQuadratureFunctionCoefficient in CoefficientVector 2022-03-14 19:12:25 -07:00
Will Pazner 6e6a0c8864 Add symmetric matrix storage to CoefficientVector 2022-03-14 17:31:36 -07:00
Will Pazner 79b7cb7032 Use CoefficientVector in the PA integrators 2022-03-14 17:31:07 -07:00
Will Pazner 4cfb23b3a7 Create CoefficientVector class
This class is for evaluating and storing coefficients (scalars, vectors,
matrices) at quadrature points defined by a QuadratureSpace. It centralizes
some memory savings and other optimizations that were previously performed by
each integrator.
2022-03-14 15:35:47 -07:00
Will Pazner be3a830a1b Project coefficients onto QuadratureFunctions 2022-03-14 15:35:47 -07:00
Will Pazner 2f5f3cdf01 Add DenseSymmetricMatrix::GetStoredSize 2022-03-14 15:35:47 -07:00
Will Pazner 965cb01072 PA unit tests: use fixed random seed 2022-03-14 15:35:47 -07:00
Will Pazner e84e70c3f3 Create a QuadratureSpace with an IntegrationRule 2022-03-14 11:57:47 -07:00
253 changed files with 17432 additions and 3661 deletions
+2 -3
View File
@@ -23,9 +23,8 @@ install:
- set MSMPI_LIB64=C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x64
- set MSMPI_INC=C:\Program Files (x86)\Microsoft SDKs\MPI\Include
# Install METIS, use a mirror because the original source server is not always
# up. Original url:
# http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz
# Install METIS, use MFEM's mirror because the original source server is often
# down and we don't support yet the new repo https://github.com/KarypisLab/METIS
- ps: Start-FileDownload 'https://mfem.github.io/tpls/metis-5.1.0.tar.gz'
- 7z x metis-5.1.0.tar.gz -so | 7z x -si -ttar > nul
- cd metis-5.1.0
+1 -1
View File
@@ -1,4 +1,4 @@
name: Build Deploy Container
name: "Docker"
on:
+23 -27
View File
@@ -10,7 +10,7 @@
# CONTRIBUTING.md for details.
# In this CI section, we build different variants of mfem and run test on them.
name: builds-and-tests
name: "Tests"
# Github actions can use the default "GITHUB_TOKEN". By default, this token
# is set to have permissive access. However, this is not a good practice
@@ -47,17 +47,17 @@ jobs:
builds-and-tests:
strategy:
matrix:
os: [ubuntu-20.04, macos-10.15, windows-2022]
os: [ubuntu-latest, macos-latest, windows-latest]
target: [dbg, opt]
mpi: [seq, par]
build-system: [make, cmake]
hypre-target: [int32]
exclude:
- os: ubuntu-20.04
- os: ubuntu-latest
build-system: cmake
- os: macos-10.15
- os: macos-latest
build-system: cmake
- os: windows-2022
- os: windows-latest
build-system: make
# 'include' allows us to:
# - Add a variable to all jobs without creating a new matrix dimension.
@@ -72,15 +72,15 @@ jobs:
codecov: NO
- target: opt
codecov: YES
- os: windows-2022
- os: windows-latest
codecov: NO
- os: ubuntu-20.04
- os: ubuntu-latest
target: opt
codecov: NO
mpi: par
build-system: cmake
hypre-target: int32
- os: ubuntu-20.04
- os: ubuntu-latest
target: opt
codecov: NO
mpi: par
@@ -112,35 +112,35 @@ jobs:
# TODO: It would be nice to have only one step, e.g. with a dedicated
# action, but I (@adrienbernede) don't see how at the moment.
- name: get MPI (Linux)
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-20.04'
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-latest'
run: |
sudo apt-get install mpich libmpich-dev
export MAKE_CXX_FLAG="MPICXX=mpic++"
- name: get lcov (Linux)
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-20.04'
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-latest'
run: |
sudo apt-get install lcov
- name: Set up Homebrew
if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-10.15'
if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-latest'
uses: Homebrew/actions/setup-homebrew@c4aafe8c4620bf08883dd4679c374f11e73329d3
- name: get MPI (MacOS)
if: matrix.mpi == 'par' && matrix.os == 'macos-10.15'
if: matrix.mpi == 'par' && matrix.os == 'macos-latest'
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew install openmpi
export MAKE_CXX_FLAG="MPICXX=mpic++"
- name: get MPI (MacOS)
if: matrix.codecov == 'YES' && matrix.os == 'macos-10.15'
if: matrix.codecov == 'YES' && matrix.os == 'macos-latest'
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew install lcov
- name: get MPI (Windows)
if: matrix.mpi == 'par' && matrix.os == 'windows-2022'
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
uses: mpi4py/setup-mpi@v1.0.3
# Get Hypre through cache, or build it.
@@ -154,7 +154,7 @@ jobs:
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
- name: get hypre
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-2022'
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
@@ -163,7 +163,7 @@ jobs:
build-system: make
- name: get hypre (Windows)
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-2022'
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
@@ -175,14 +175,14 @@ jobs:
# Install will only run on cache miss.
- name: cache metis
id: metis-cache
if: matrix.mpi == 'par' && matrix.os != 'windows-2022'
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
uses: actions/cache@v2
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
- name: install metis
if: matrix.mpi == 'par' && matrix.os != 'windows-2022' && steps.metis-cache.outputs.cache-hit != 'true'
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.2
with:
archive: ${{ env.METIS_ARCHIVE }}
@@ -196,20 +196,16 @@ jobs:
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
- name: prepare binary cache location
if: matrix.os == 'windows-2022' && steps.vcpkg-cache.outputs.cache-hit != 'true'
if: matrix.os == 'windows-latest' && steps.vcpkg-cache.outputs.cache-hit != 'true'
run: |
mkdir -p vcpkg_cache
- name: install metis (Windows)
if: matrix.mpi == 'par' && matrix.os == 'windows-2022'
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
run: |
$PortFile = 'C:\vcpkg\ports\metis\portfile.cmake'
$OriginalURL = 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-${METIS_VERSION}.tar.gz'
$NewURL = 'https://github.com/mfem/tpls/raw/gh-pages/metis-5.1.0.tar.gz'
(Get-Content $PortFile).replace($OriginalURL, $NewURL) | Set-Content $PortFile
vcpkg install metis --triplet=x64-windows-static
vcpkg install metis-mfem --triplet=x64-windows-static --overlay-ports=${{ env.MFEM_TOP_DIR }}/config/vcpkg/ports
# MFEM build and test
- name: build
@@ -252,7 +248,7 @@ jobs:
shell: bash
- name: cmake unit tests (Ubuntu 20.04)
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-20.04'
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
[[ ${{ matrix.target }} == 'dbg' ]] && CTEST_CONFIG="Debug"
@@ -260,7 +256,7 @@ jobs:
shell: bash
- name: cmake tests
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-20.04'
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
cd ${{ env.MFEM_TOP_DIR }}/build && ctest --output-on-failure -C ${CTEST_CONFIG}
+70
View File
@@ -0,0 +1,70 @@
# For most projects, this workflow file will not need changing; you simply need
# to commit it to your repository.
#
# You may wish to alter this file to override the set of languages analyzed,
# or to provide custom queries or build logic.
#
# ******** NOTE ********
# We have attempted to detect the languages in your repository. Please check
# the `language` matrix defined below to confirm you have the correct set of
# supported CodeQL languages.
#
name: "Static Analysis"
on:
push:
branches: [ "master", "next"]
pull_request:
# The branches below must be a subset of the branches above
branches: [ "master" ]
jobs:
analyze:
name: Analyze
runs-on: ubuntu-latest
permissions:
actions: read
contents: read
security-events: write
strategy:
fail-fast: false
matrix:
language: [ 'cpp' ]
# CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ]
# Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
steps:
- name: Checkout repository
uses: actions/checkout@v3
# Initializes the CodeQL tools for scanning.
- name: Initialize CodeQL
uses: github/codeql-action/init@v2
with:
languages: ${{ matrix.language }}
# If you wish to specify custom queries, you can do so here or in a config file.
# By default, queries listed here will override any specified in a config file.
# Prefix the list here with "+" to use these queries and those in the config file.
# Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
# queries: security-extended,security-and-quality
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
# If this step fails, then you should remove it and run the build manually (see below)
- name: Autobuild
uses: github/codeql-action/autobuild@v2
# ️ Command-line programs to run using the OS shell.
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
# If the Autobuild fails above, remove it and uncomment the following three lines.
# modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
# - run: |
# echo "Run, Build Application using script"
# ./location_of_script_within_repo/buildscript.sh
- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v2
+2 -2
View File
@@ -9,7 +9,7 @@
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
name: build-analysis
name: "Build Analysis"
permissions:
actions: write
@@ -31,7 +31,7 @@ env:
jobs:
gitignore:
runs-on: ubuntu-18.04
runs-on: ubuntu-latest
steps:
- name: Cancel Previous Runs
+8 -6
View File
@@ -9,7 +9,7 @@
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
name: repo-check
name: "Checks"
permissions:
actions: write
@@ -28,7 +28,7 @@ on:
jobs:
file-headers-check:
runs-on: ubuntu-18.04
runs-on: ubuntu-latest
if: |
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
@@ -78,7 +78,7 @@ jobs:
exit 1
code-style:
runs-on: ubuntu-18.04
runs-on: ubuntu-latest
if: |
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
@@ -88,14 +88,14 @@ jobs:
- name: get astyle
run: |
sudo apt-get install astyle=3.1-1ubuntu2
sudo apt-get install astyle
- name: style check
run: |
./config/githooks/pre-push --style
documentation:
runs-on: ubuntu-18.04
runs-on: ubuntu-latest
if: |
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
@@ -106,6 +106,8 @@ jobs:
- name: get doxygen and graphviz
run: |
sudo apt-get install doxygen graphviz
cd doc
doxygen -u CodeDocumentation.conf.in
- name: build documentation
run: |
@@ -118,7 +120,7 @@ jobs:
github.ref != 'refs/heads/master' &&
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
runs-on: ubuntu-18.04
runs-on: ubuntu-latest
steps:
- name: checkout mfem
uses: actions/checkout@v2
+8
View File
@@ -18,6 +18,11 @@ CMakeFiles/
# Backup files
*~
*.sqlite
*.nsys-rep
*.qdstrm
*.csv
# Default install location
/mfem/
@@ -275,6 +280,7 @@ miniapps/tools/load-dc
miniapps/tools/convert-dc
miniapps/tools/lor-transfer
miniapps/tools/get-values
miniapps/tools/check-tmop-metric
miniapps/toys/automata
miniapps/toys/life
@@ -307,6 +313,7 @@ miniapps/solvers/sol.*
miniapps/parelag/MultilevelHcurlHdivSolver
miniapps/parelag/*.mesh
miniapps/multidomain/multidomain
miniapps/hooke/hooke
# Unit test binary and outputs
@@ -327,6 +334,7 @@ tests/benchmarks/bench_ceed
tests/benchmarks/bench_tmop
tests/benchmarks/bench_vector
tests/benchmarks/bench_virtuals
tests/benchmarks/bench_lor
# Test script output
tests/scripts/*.err
+85 -39
View File
@@ -8,31 +8,48 @@
https://mfem.org
Version 4.4.1 (development)
===========================
Version 4.5, released on October 22, 2022
=========================================
Meshing improvements
--------------------
- Added new SubMesh and ParSubMesh classes that can be used to extract a subset
of a given Mesh. These classes have the same functionality as Mesh and ParMesh
and work with all existing MFEM interfaces like finite element spaces etc.
- Added a method, ParMesh::GetSerialMesh(), that reconstructs a partitioned
parallel mesh on a given single rank. Also, added ParMesh::PrintAsSerial(),
which saves the reconstructed serial mesh to a C++ stream on rank 0.
- Added more 3D TMOP metrics, as well as specialized metrics for mesh
untangling and worst-case quality improvement.
- Added a new method, Mesh::NodesUpdated, which should be called after the mesh
node coordinates have changed, e.g. after the mesh has moved. This is
necessary, for example, with device assembly of linear and bilinear forms.
- Added support for mixed meshes and pyramids in GSLIB-FindPoints.
Discretization improvements
---------------------------
- Added support for assembling low-order-refined matrices using a GPU-enabled
"batched" algorithm. The lor_solvers and plor_solvers now fully support GPU
acceleration.
- Added support for partial assembly and fully matrix-free operators on mixed
meshes (different element types and p-adaptivity) through libCEED, including
device acceleration, e.g. with NVIDIA and AMD GPUs. The p-adaptivity is
currently limited by MFEM capabilities, i.e. 2D serial meshes. All mixed
element topologies are supported in serial and parallel: segment, triangle,
square, tetrahedron, cube, prism, and pyramid.
- Added full assembly and device support for several LinearForm integrators:
* DomainLF: (f, v)
* VectorDomainLF: ((f1,...,fn), (v1,...,vn))
* DomainLFGrad: (f, grad(v))
* VectorDomainLFGrad: ((f1x,f1y,f1z,...,fnx,fny,fnz), grad(v1,...,vn))
The device assembly of linear forms has to be explicitly enabled by calling
LinearForm::UseFastAssembly(true), otherwise the legacy linear form assembly
is used by default.
- Added support for assembling low-order-refined matrices using a GPU-enabled
"batched" algorithm. The lor_solvers and plor_solvers now fully support GPU
acceleration with arbitrary user-supplied coefficients.
- Added a new class FaceQuadratureSpace that allows for the construction of
QuadratureFunctions on the interior or boundary faces of a mesh.
- Added a class CoefficientVector for efficient access of variable coefficient
values at quadrature points (in particular for GPU/device kernels).
- Added WhiteGaussianNoiseDomainLFIntegrator: a LinearFormIntegrator class for
spatial Gaussian white noise.
@@ -40,8 +57,25 @@ Discretization improvements
- Added a new Zienkiewicz-Zhu patch recovery-based a posteriori error estimator.
See fem/estimators.hpp.
- Various fixes and improvements in LinearFormExtension.
Linear and nonlinear solvers
----------------------------
- Added a new class DGMassInverse that performs a local element-wise CG
iteration to solve systems involving the discontinuous Galerkin mass matrix,
including support for device/GPU acceleration.
- Added more flexibility to the constrained solver classes:
* PenaltyConstrainedSolver now allows for a vector of penalty parameters
(necessary for penalty contact)
* PenaltyConstrainedSolver and EliminationSolver can use GMRES or PCG
* All constraint solver classes can take a user-defined preconditioner
- Added functions to toggle additional options for the SuperLU_Dist and Hypre
preconditioners (ParaSails, Euclid, ILU).
- Added boundary elimination with device support for `SparseMatrix` and
`HypreParMatrix`.
New and updated examples and miniapps
-------------------------------------
@@ -51,12 +85,28 @@ New and updated examples and miniapps
automatic differentiation tools like a native dual number implementation or a
third party library such as Enzyme. See miniapps/elasticity for more details.
- Added example for body-fitted volumetric and shape integration using the
Algoim library in miniapps/shifted.
- Add a new example code, Example 33/33p, to demonstrate the solution of
spectral fractional PDEs with MFEM.
Integrations, testing and documentation
---------------------------------------
- Added a Dockerfile for a simple MFEM container, see config/docker/README.md.
More sophisticated developer containers are available in the new repo
https://github.com/mfem/containers.
- Added support for the LLVM-based automatic differentiation tool Enzyme, see
https://github.com/EnzymeAD/Enzyme. Build system flags and a convenience
header are provided. The functionality and interaction are demonstrated in a
new miniapp in miniapps/elasticity.
- Added support for partial assembly and fully matrix-free operators on mixed
meshes (different element types and p-adaptivity) through libCEED, including
device acceleration, e.g. with NVIDIA and AMD GPUs. The p-adaptivity is
currently limited to 2D serial meshes. All mixed element topologies are
supported in both serial and parallel.
- Added support for ParMoonolith, https://bitbucket.org/zulianp/par_moonolith,
which provides parallel non-conforming, non-matching, variational, volumetric
@@ -64,29 +114,40 @@ Integrations, testing and documentation
between arbitrarily distributed and unrelated finite element meshes in a
variationally consistent way.
- Added support for the LLVM-based automatic differentiation tool Enzyme, see
https://github.com/EnzymeAD/Enzyme. Build system flags and a convenience
header are provided. The functionality and interaction are demonstrated in a
new miniapp in miniapps/elasticity.
- Fully encapsulated SUNDIALS `N_Vector` object within the `SundialsNVector`
class by removing deprecated (e.g. `HypreParVector::ToNVector`) and
non-deprecated (e.g. `Vector::ToNVector`) functions in other classes.
- Added example for body-fitted volumetric and shape integration using the
Algoim library.
- New benchmark for the different assembly levels inspired by the CEED
Bake-Off Problems, see tests/benchmarks/bench_assembly_levels.cpp.
- Added Windows 2022 CI testing with GitHub actions.
Miscellaneous
-------------
- Various other simplifications, extensions, and bugfixes in the code.
- The method SparseMatrix::EnsureMultTranspose() is now automatically called
by the methods AddMultTranspose(), MultTranspose(), and AbsMultTranspose().
Added a method with the same name to class HypreParMatrix which is also called
automatically by the HypreParMatrix::MultTranspose() methods.
- Updated various MemoryUsage methods to return 'std::size_t' instead of 'long'
since the latter is 32-bit in Win64 builds.
- Added boundary elimination with device support for `SparseMatrix` and
`HypreParMatrix`.
- When using `AssemblyLevel::FULL`, `FABilinearFormExtension::FormSystemMatrix`
outputs an `OperatorHandle` containing a `SparseMatrix` in serial, and an
`HypreParMatrix` in parallel (instead of a `ConstrainedOperator`).
- Added TMOP metrics for mesh untangling and worst-case quality improvement.
- In various places in the library, replace the use of 'long' with 'long long'
to better support Win64 builds where 'long' is 32-bit and 'long long' is
64-bit. On Linux and MacOS, both types are typically 64-bit.
- The behavior of GridFunction::GetTrueVector() has been changed to not return
an empty true vector.
- Added support for ordering search points byVDIM in FindPointsGSLIB.
- Various other simplifications, extensions, and bugfixes in the code.
Version 4.4, released on March 21, 2022
=======================================
@@ -119,11 +180,6 @@ Meshing improvements
- Added a simpler interface to access mesh face information, see FaceInformation
and GetFaceInformation in the Mesh class.
- Added the method ParMesh::GetSerialMesh() that reconstructs a partitioned
parallel mesh on a given single rank. Also, added the method
ParMesh::PrintAsSerial() that saves the reconstructed serial mesh to a C++
stream on rank 0.
- Gmsh meshes where all elements have zero physical tag (the default Gmsh output
format if no physical groups are defined) are now successfully loaded, and
elements are reassigned attribute number 1.
@@ -213,9 +269,6 @@ Integrations, testing and documentation
- Switched from Artistic Style (astyle) version 2.05.1 to version 3.1 for code
formatting. See the "make style" target.
- New benchmark for the different assembly levels inspired by the CEED
Bake-Off Problems, see tests/benchmarks/bench_assembly_levels.cpp.
Miscellaneous
-------------
- Added a simple singleton class, Mpi, as a replacement for MPI_Session. New
@@ -226,13 +279,6 @@ Miscellaneous
- Fixed several MinGW build issues on Windows.
- In various places in the library, replace the use of 'long' with 'long long'
to better support Win64 builds where 'long' is 32-bit and 'long long' is
64-bit. On Linux and MacOS, both types are typically 64-bit.
- Update various "MemoryUsage" methods to return 'std::size_t' instead of 'long'
since the latter is 32-bit in Win64 builds.
- Added 'double' atomicAdd implementation for previous versions of CUDA.
- HypreParVector and Vector now support C++ move semantics, and the copy
+18 -5
View File
@@ -51,7 +51,7 @@ project(mfem NONE)
# Current version of MFEM, see also `makefile`.
# mfem_VERSION = (string)
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
set(${PROJECT_NAME}_VERSION 4.4.1)
set(${PROJECT_NAME}_VERSION 4.5.0)
# Prohibit in-source build
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
@@ -81,6 +81,10 @@ if (MFEM_USE_STRUMPACK)
# Just needed to find the MPI_Fortran libraries to link with
set(XSDK_ENABLE_Fortran ON)
endif()
# SUNDIALS >= 6.4.0 requires C++14:
if (MFEM_USE_SUNDIALS AND ("${CMAKE_CXX_STANDARD}" LESS "14"))
set(CMAKE_CXX_STANDARD 14)
endif()
if (MFEM_USE_GINKGO AND ("${CMAKE_CXX_STANDARD}" LESS "14"))
set(CMAKE_CXX_STANDARD 14)
endif()
@@ -137,7 +141,7 @@ if (MFEM_USE_CUDA)
set(CUSPARSE_FOUND TRUE)
set(CUSPARSE_LIBRARIES "cusparse")
set(CUBLAS_FOUND TRUE)
set(CUSBLAS_LIBRARIES "cublas")
set(CUBLAS_LIBRARIES "cublas")
endif()
if (XSDK_ENABLE_C)
@@ -200,10 +204,10 @@ if (MFEM_USE_MPI)
find_package(MPI REQUIRED)
set(MPI_CXX_INCLUDE_DIRS ${MPI_CXX_INCLUDE_PATH})
if (MFEM_MPIEXEC)
set(MPIEXEC ${MFEM_MPIEXEC})
string(REPLACE " " ";" MPIEXEC ${MFEM_MPIEXEC})
endif()
if (MFEM_MPIEXEC_NP)
set(MPIEXEC_NUMPROC_FLAG ${MFEM_MPIEXEC_NP})
string(REPLACE " " ";" MPIEXEC_NUMPROC_FLAG ${MFEM_MPIEXEC_NP})
endif()
# Parallel MFEM depends on hypre
find_package(HYPRE REQUIRED)
@@ -477,12 +481,21 @@ if (NOT DEFINED MFEM_TIMER_TYPE)
endif()
endif()
# Without this, CMake 3.21.1 (and 3.20.2) run into CMake Errors like the following:
# CMake Error at config/cmake/modules/MfemCmakeUtilities.cmake:60 (add_library):
# Target "mfem" links to target "Threads::Threads" but the target was not
# found. Perhaps a find_package() call is missing for an IMPORTED target, or
# an ALIAS target is missing?
# Call Stack (most recent call first):
# CMakeLists.txt:474 (mfem_add_library)
find_package(Threads REQUIRED)
# List all possible libraries in order of dependencies.
# [METIS < SuiteSparse]:
# With newer versions of SuiteSparse which include METIS header using 64-bit
# integers, the METIS header (with 32-bit indices, as used by mfem) needs to
# be before SuiteSparse.
set(MFEM_TPLS OPENMP HYPRE BLAS LAPACK SuperLUDist METIS SuiteSparse SUNDIALS
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist METIS SuiteSparse SUNDIALS
PETSC SLEPC MESQUITE MUMPS STRUMPACK AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
+8 -2
View File
@@ -102,7 +102,9 @@ The MFEM source code has the following structure:
.
├── config
│ ├── cmake
── githooks
── docker
│ ├── githooks
│ └── vcpkg
├── data
├── doc
├── examples
@@ -111,6 +113,7 @@ The MFEM source code has the following structure:
│ ├── ginkgo
│ ├── hiop
│ ├── jupyter
│ ├── moonolith
│ ├── petsc
│ ├── pumi
│ ├── sundials
@@ -118,13 +121,15 @@ The MFEM source code has the following structure:
├── fem
│ ├── ceed
│ ├── fe
│ ├── qinterp
│ ├── lor
│ ├── moonolith
│ ├── qinterp
│ └── tmop
├── general
├── linalg
│ └── simd
├── mesh
│ └── submesh
├── miniapps
│ ├── adjoint
│ ├── autodiff
@@ -134,6 +139,7 @@ The MFEM source code has the following structure:
│ ├── hooke
│ ├── meshing
│ ├── mtop
│ ├── multidomain
│ ├── navier
│ ├── nurbs
│ ├── parelag
+17 -9
View File
@@ -7,6 +7,10 @@
https://mfem.org
This file provides a detailed description of how to build and install the MFEM
library. For a simple build, see the step-by-step instructions on the website
at https://mfem.org/building.
The MFEM library has a serial and an MPI-based parallel version, which largely
share the same code base. The only prerequisite for building the serial version
of MFEM is a (modern) C++ compiler, such as g++. The parallel version of MFEM
@@ -16,7 +20,11 @@ requires an MPI C++ compiler, as well as the following external libraries:
https://github.com/hypre-space/hypre
- METIS (a family of multilevel partitioning algorithms)
http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
https://github.com/mfem/tpls
Note: We recommend our mirror of metis-4.0.3/5.1.0 above because the METIS
webpage, http://glaros.dtc.umn.edu/gkhome/metis/metis/overview, is often down
and we don't support yet the new repo https://github.com/KarypisLab/METIS.
The hypre dependency can be downloaded as a tarball from GitHub or from the
project webpage https://www.llnl.gov/casc/hypre. For example, the 2.24.0 release
@@ -472,10 +480,10 @@ MFEM_USE_CODIPACK = YES/NO
www.scicomp.uni-kl.de/codi/
MFEM_USE_ALGOIM = YES/NO
Enable the usage of Algoim - a collection of high-order accurate numerical
methods and C++ algorithms for working with implicitly-defined geometry and
level set methods. The Algoim library requires the Blitz++ library. The MFEM
provides interface to Algoim v1. Thus, to check out the specific state use:
Enable the usage of Algoim - a collection of high-order accurate numerical
methods and C++ algorithms for working with implicitly-defined geometry and
level set methods. The Algoim library requires the Blitz++ library. The MFEM
provides interface to Algoim v1. Thus, to check out the specific state use:
git checkout 9c9ca0ef094d8ab0390ed36367a1151b459bbe0a
https://algoim.github.io
@@ -550,7 +558,7 @@ MFEM_USE_FMS = YES/NO
Enables support for the FMS library which consists of the DataCollection
sub-class mfem::FMSDataCollection for I/O in FMS formats, see the header file
fem/fmsdatacollection.hpp. In addition, this option enables in-memory
convetion routines between FMS's FmsDataCollection structure and MFEM's
conversion routines between FMS's FmsDataCollection structure and MFEM's
DataCollection class, see the header file fem/fmsconvert.hpp.
MFEM_USE_PARELAG = YES/NO
@@ -597,7 +605,7 @@ The specific libraries and their options are:
- METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
MFEM_USE_METIS_5 = YES (default is to use METIS 4).
URL: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
URL: https://github.com/mfem/tpls (MFEM mirror, see above)
Options: METIS_OPT, METIS_LIB.
Versions: METIS 4.0.3 or 5.1.0.
@@ -754,12 +762,12 @@ The specific libraries and their options are:
Options: GSLIB_OPT, GSLIB_LIB.
Versions: GSLIB >= 1.0.7.
- ALGOIM (optional), used when MFE_USE_ALGOIM=YES. The library provides only
- ALGOIM (optional), used when MFEM_USE_ALGOIM=YES. The library provides only
headers so it just needs to be downloaded at the same level as MFEM. Download
the specific version we use as:
"git clone https://github.com/algoim/algoim.git;
git checkout 9c9ca0ef094d8ab0390ed36367a1151b459bbe0a"
ALGOIM depends on BLITZ and rhe library must be built prior to the MFEM build.
ALGOIM depends on BLITZ and the library must be built prior to the MFEM build.
Download v1.0.2, untar it at the same level as MFEM and create a symbolic link:
"ln -s blitz-1.0.2 blitz".
Build Blitz using CMake as:
+1 -1
View File
@@ -19,7 +19,7 @@ if(EXISTS "${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
# Set ENZYME_FOUND
set(ENZYME_FOUND TRUE CACHE BOOL "ENZYME was found." FORCE)
# Set CXX flags to accomodate the Enzyme Clang plugin
# Set CXX flags to accommodate the Enzyme Clang plugin
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Xclang -load -Xclang ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so -mllvm -enzyme-loose-types=1")
set(MFEM_USE_ENZYME YES)
else()
+57
View File
@@ -0,0 +1,57 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Defines the following variables:
# - HDF5_FOUND - If HDF5 was found
# - HDF5_LIBRARIES - The HDF5 libraries
# - HDF5_INCLUDE_DIRS - The HDF5 include directories
# First Check for HDF5_DIR
if(NOT HDF5_DIR)
MESSAGE(FATAL_ERROR "Could not find HDF5. HDF5 support needs explicit HDF5_DIR")
endif()
# Find includes
find_path( HDF5_INCLUDE_DIRS hdf5.h
PATHS ${HDF5_DIR}/include/
NO_DEFAULT_PATH
NO_CMAKE_ENVIRONMENT_PATH
NO_CMAKE_PATH
NO_SYSTEM_ENVIRONMENT_PATH
NO_CMAKE_SYSTEM_PATH)
find_library( __HDF5_LIBRARY NAMES hdf5 libhdf5 libhdf5_D libhdf5_debug
PATHS ${HDF5_DIR}/lib
NO_DEFAULT_PATH
NO_CMAKE_ENVIRONMENT_PATH
NO_CMAKE_PATH
NO_SYSTEM_ENVIRONMENT_PATH
NO_CMAKE_SYSTEM_PATH)
find_library( __HDF5_HL_LIBRARY NAMES hdf5_hl libhdf5_hl libhdf5_hl_D libhdf5_hl_debug
PATHS ${HDF5_DIR}/lib
NO_DEFAULT_PATH
NO_CMAKE_ENVIRONMENT_PATH
NO_CMAKE_PATH
NO_SYSTEM_ENVIRONMENT_PATH
NO_CMAKE_SYSTEM_PATH)
set(HDF5_LIBRARIES ${__HDF5_HL_LIBRARY} ${__HDF5_LIBRARY})
include(FindPackageHandleStandardArgs)
# Handle the QUIETLY and REQUIRED arguments and set HDF5_FOUND to TRUE if all
# listed variables are TRUE
find_package_handle_standard_args(HDF5 DEFAULT_MSG
HDF5_INCLUDE_DIRS
__HDF5_LIBRARY
__HDF5_HL_LIBRARY
HDF5_LIBRARIES )
+3 -3
View File
@@ -14,6 +14,6 @@
# - UMPIRE_LIBRARIES
# - UMPIRE_INCLUDE_DIRS
include(MfemCmakeUtilities)
mfem_find_package(UMPIRE UMPIRE UMPIRE_DIR "include" "umpire/Umpire.hpp" "lib" "umpire"
"Paths to headers required by UMPIRE." "Libraries required by UMPIRE.")
find_package(umpire REQUIRED CONFIG)
set(UMPIRE_FOUND ${umpire_FOUND})
set(UMPIRE_LIBRARIES "umpire")
+4 -12
View File
@@ -43,22 +43,14 @@ function(convert_filenames_to_full_paths NAMES)
set(${NAMES} ${tmp_names} PARENT_SCOPE)
endfunction()
# Wrapper for add_executable that calls the HIP wrapper if applicable
# Wrapper for add_executable
macro(mfem_add_executable NAME)
if (MFEM_USE_HIP)
add_executable(${NAME} ${ARGN})
else()
add_executable(${NAME} ${ARGN})
endif()
add_executable(${NAME} ${ARGN})
endmacro()
# Wrapper for add_library that calls the HIP wrapper if applicable
# Wrapper for add_library
macro(mfem_add_library NAME)
if (MFEM_USE_HIP)
add_library(${NAME} ${ARGN})
else()
add_library(${NAME} ${ARGN})
endif()
add_library(${NAME} ${ARGN})
endmacro()
# Simple shortcut to add_custom_target() with option to add the target to the
+2
View File
@@ -31,9 +31,11 @@
// Windows specific options
#ifdef _WIN32
#ifndef _USE_MATH_DEFINES
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
#define _USE_MATH_DEFINES
#endif
#endif
// On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
// the following macro allows us to get M_PI and some needed functions, e.g.
// posix_memalign(), strdup(), strerror_r().
+11 -7
View File
@@ -179,7 +179,7 @@ ifeq ($(MFEM_USE_MPI)$(MFEM_USE_HIP),YESYES)
endif
# ROCM/HIP directory such that ROCM/HIP libraries like rocsparse and rocrand are
# found in $(HIP_DIR)/lib, usually as links. Typically, this directoory is of
# found in $(HIP_DIR)/lib, usually as links. Typically, this directory is of
# the form /opt/rocm-X.Y.Z which is called ROCM_PATH by hipconfig.
ifeq ($(MFEM_USE_HIP),YES)
HIP_DIR := $(patsubst %/,%,$(dir $(shell which $(HIP_CXX))))
@@ -251,12 +251,16 @@ POSIX_CLOCKS_LIB = -lrt
# SUNDIALS library configuration
# For sundials_nvecmpiplusx and nvecparallel remember to build with MPI_ENABLE=ON
# and modify cmake variables for hypre for sundials
SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
SUNDIALS_LIBDIR = $(wildcard $(SUNDIALS_DIR)/lib*)
SUNDIALS_LIB = $(XLINKER)-rpath,$(SUNDIALS_LIBDIR) -L$(SUNDIALS_LIBDIR)\
SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
# SUNDIALS >= 6.4.0 requires C++14:
ifeq ($(MFEM_USE_SUNDIALS),YES)
BASE_FLAGS = -std=c++14
endif
SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
SUNDIALS_LIB = $(XLINKER)-rpath,$(SUNDIALS_DIR)/lib64\
$(XLINKER)-rpath,$(SUNDIALS_DIR)/lib\
-L$(SUNDIALS_DIR)/lib64 -L$(SUNDIALS_DIR)/lib\
-lsundials_arkode -lsundials_cvodes -lsundials_nvecserial -lsundials_kinsol
ifeq ($(MFEM_USE_MPI),YES)
SUNDIALS_LIB += -lsundials_nvecparallel -lsundials_nvecmpiplusx
endif
@@ -309,7 +313,7 @@ SCALAPACK_LIB = -L$(SCALAPACK_DIR)/lib -lscalapack $(LAPACK_LIB)
MPI_FORTRAN_LIB = -lmpifort
# OpenMPI:
# MPI_FORTRAN_LIB = -lmpi_mpifh
# Additional Fortan library:
# Additional Fortran library:
# MPI_FORTRAN_LIB += -lgfortran
# MUMPS library configuration
+2 -3
View File
@@ -554,15 +554,14 @@ function go()
local cmd_line="${1##+( )}"
cmd_line="${cmd_line%%+( )}"
shopt -u extglob
eval local cmd=(${cmd_line})
local res=""
echo $sep
echo "<${group}>" "${cmd_line}"
echo $sep
if [ "${timing}" == "yes" ]; then
timed_run "${cmd[@]}"
timed_run eval "${cmd_line}"
else
"${cmd[@]}"
eval "${cmd_line}"
fi
if [ "$?" -eq 0 ]; then
res="${green} OK ${none}"
@@ -0,0 +1,8 @@
--- a/CMakeLists.txt Wed Dec 21 18:24:22 2016
+++ b/CMakeLists.txt Wed Dec 21 18:24:26 2016
@@ -20,4 +20,4 @@
# Recursively look for CMakeLists.txt in subdirs.
add_subdirectory("include")
add_subdirectory("libmetis")
-add_subdirectory("programs")
+# add_subdirectory("programs")
@@ -0,0 +1,15 @@
--- a/CMakeLists.txt Sat Mar 30 17:24:45 2013
+++ b/CMakeLists.txt Wed Dec 21 18:23:43 2016
@@ -4,11 +4,7 @@
set(GKLIB_PATH "GKlib" CACHE PATH "path to GKlib")
set(SHARED FALSE CACHE BOOL "build a shared library")
-if(MSVC)
- set(METIS_INSTALL FALSE)
-else()
- set(METIS_INSTALL TRUE)
-endif()
+set(METIS_INSTALL TRUE)
# Configure libmetis library.
if(SHARED)
@@ -0,0 +1,34 @@
diff --git a/include/metis.h b/include/metis.h
index dc5406a..7732437 100644
--- a/include/metis.h
+++ b/include/metis.h
@@ -72,10 +72,14 @@ typedef __int64 int64_t;
#define PRId64 "I64d"
#define SCNd32 "ld"
#define SCNd64 "I64d"
+#ifdef _WIN32
+#include <stdint.h>
+#else
#define INT32_MIN ((int32_t)_I32_MIN)
#define INT32_MAX _I32_MAX
#define INT64_MIN ((int64_t)_I64_MIN)
#define INT64_MAX _I64_MAX
+#endif
#else
#include <inttypes.h>
#endif
diff --git a/GKlib/gk_arch.h b/GKlib/gk_arch.h
index 78b1431..7258763 100644
--- a/GKlib/gk_arch.h
+++ b/GKlib/gk_arch.h
@@ -32,8 +32,8 @@
#ifdef __MSC__
- #include "ms_stdint.h"
- #include "ms_inttypes.h"
+ #include <stdint.h>
+ #include <inttypes.h>
#include "ms_stat.h"
#else
#ifndef SUNOS
@@ -0,0 +1,11 @@
--- a/GKlib/gk_arch.h Wed Dec 21 18:34:18 2016
+++ b/GKlib/gk_arch.h Wed Dec 21 18:30:49 2016
@@ -58,7 +58,7 @@
#define PTRDIFF_MAX INT64_MAX
#endif
-#ifdef __MSC__
+#if defined(__MSC__) && (_MSC_VER < 1900)
/* MSC does not have rint() function */
#define rint(x) ((int)((x)+0.5))
@@ -0,0 +1,14 @@
diff --git a/CMakeLists.txt b/CMakeLists.txt
index e94f050..b9613a7 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -1,7 +1,8 @@
cmake_minimum_required(VERSION 2.8)
project(METIS)
-set(GKLIB_PATH "GKlib" CACHE PATH "path to GKlib")
+set(GKLIB_PATH "${CMAKE_SOURCE_DIR}/GKlib" CACHE PATH "path to GKlib")
+
set(SHARED FALSE CACHE BOOL "build a shared library")
set(METIS_INSTALL TRUE)
@@ -0,0 +1,11 @@
--- a/libmetis/metislib.h Sat Mar 30 17:24:45 2013
+++ b/libmetis/metislib.h Wed Dec 21 18:30:59 2016
@@ -31,7 +31,7 @@
#include <proto.h>
-#if defined(COMPILER_MSC)
+#if defined(COMPILER_MSC) && (_MSC_VER < 1900)
#if defined(rint)
#undef rint
#endif
@@ -0,0 +1,10 @@
--- a/libmetis/CMakeLists.txt Sat Mar 30 17:24:45 2013
+++ b/libmetis/CMakeLists.txt Wed Dec 21 17:41:37 2016
@@ -11,6 +11,6 @@
if(METIS_INSTALL)
install(TARGETS metis
LIBRARY DESTINATION lib
- RUNTIME DESTINATION lib
+ RUNTIME DESTINATION bin
ARCHIVE DESTINATION lib)
endif()
@@ -0,0 +1,44 @@
diff --git a/CMakeLists.txt b/CMakeLists.txt
index b9613a7..e43ffee 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -22,3 +22,23 @@ include_directories(include)
add_subdirectory("include")
add_subdirectory("libmetis")
# add_subdirectory("programs")
+
+if(METIS_INSTALL)
+ set(PRJ_NAME metis)
+ set(PRJ_VER 5.1.0)
+ install(EXPORT metisTargets
+ FILE ${PRJ_NAME}Targets.cmake
+ DESTINATION lib/cmake/${PRJ_NAME})
+ include(CMakePackageConfigHelpers)
+ write_basic_package_version_file(
+ ${CMAKE_CURRENT_BINARY_DIR}/${PRJ_NAME}ConfigVersion.cmake
+ VERSION ${PRJ_VER}
+ COMPATIBILITY SameMajorVersion)
+ file(WRITE ${CMAKE_CURRENT_BINARY_DIR}/${PRJ_NAME}Config.cmake
+ "include(\${CMAKE_CURRENT_LIST_DIR}/${PRJ_NAME}Targets.cmake)")
+ install(FILES
+ ${CMAKE_CURRENT_BINARY_DIR}/${PRJ_NAME}ConfigVersion.cmake
+ ${CMAKE_CURRENT_BINARY_DIR}/${PRJ_NAME}Config.cmake
+ DESTINATION lib/cmake/${PRJ_NAME})
+endif()
+
diff --git a/libmetis/CMakeLists.txt b/libmetis/CMakeLists.txt
index 7a5fc74..5a68cf0 100644
--- a/libmetis/CMakeLists.txt
+++ b/libmetis/CMakeLists.txt
@@ -9,8 +9,9 @@ if(UNIX)
endif()
if(METIS_INSTALL)
- install(TARGETS metis
+ install(TARGETS metis EXPORT metisTargets
LIBRARY DESTINATION lib
RUNTIME DESTINATION bin
- ARCHIVE DESTINATION lib)
+ ARCHIVE DESTINATION lib
+ INCLUDES DESTINATION include)
endif()
@@ -0,0 +1,41 @@
vcpkg_check_linkage(ONLY_STATIC_LIBRARY)
set(OPTIONS -DSHARED=OFF)
set(METIS_VERSION 5.1.0)
vcpkg_download_distfile(ARCHIVE
URLS "https://github.com/mfem/tpls/raw/gh-pages/metis-${METIS_VERSION}.tar.gz"
FILENAME "metis-${METIS_VERSION}.tar.gz"
SHA512 deea47749d13bd06fbeaf98a53c6c0b61603ddc17a43dae81d72c8015576f6495fd83c11b0ef68d024879ed5415c14ebdbd87ce49c181bdac680573bea8bdb25
)
vcpkg_extract_source_archive_ex(
OUT_SOURCE_PATH SOURCE_PATH
ARCHIVE ${ARCHIVE}
REF ${METIS_VERSION}
PATCHES
enable-install.patch
disable-programs.patch
fix-runtime-install-destination.patch
fix-metis-vs14-math.patch
fix-gklib-vs14-math.patch
fix-linux-build-error.patch
install-metisConfig.patch
fix-INT_MIN_define.patch
)
vcpkg_configure_cmake(
SOURCE_PATH ${SOURCE_PATH}
PREFER_NINJA
OPTIONS ${OPTIONS}
)
vcpkg_install_cmake()
vcpkg_copy_pdbs()
vcpkg_fixup_cmake_targets(CONFIG_PATH lib/cmake/metis)
file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/include)
# Handle copyright
file(COPY ${SOURCE_PATH}/LICENSE.txt DESTINATION ${CURRENT_PACKAGES_DIR}/share/metis)
file(INSTALL ${SOURCE_PATH}/LICENSE.txt DESTINATION ${CURRENT_PACKAGES_DIR}/share/${PORT} RENAME copyright)
+7
View File
@@ -0,0 +1,7 @@
{
"name": "metis-mfem",
"version-string": "5.1.0",
"port-version": 0,
"description": "Serial Graph Partitioning and Fill-reducing Matrix Ordering",
"homepage": "http://glaros.dtc.umn.edu/gkhome/metis/metis/overview"
}
+1 -1
View File
@@ -1,7 +1,7 @@
MFEM mesh v1.0
#
# MFEM Geomety Types (see mesh/geom.hpp):
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
+2 -2
View File
@@ -38,7 +38,7 @@ PROJECT_NAME = "MFEM"
# could be handy for archiving the generated documentation or if some version
# control system is used.
PROJECT_NUMBER = v4.4.1
PROJECT_NUMBER = v4.5.0
# Using the PROJECT_BRIEF tag one can provide an optional one line description
# for a project that appears at the top of each page and should give viewer a
@@ -2349,7 +2349,7 @@ PLANTUML_INCLUDE_PATH =
# Minimum value: 0, maximum value: 10000, default value: 50.
# This tag requires that the tag HAVE_DOT is set to YES.
DOT_GRAPH_MAX_NODES = 50
DOT_GRAPH_MAX_NODES = 100
# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the graphs
# generated by dot. A depth value of 3 means that only nodes reachable from the
+1 -1
View File
@@ -30,7 +30,7 @@
//
// Device sample runs:
// ex1 -pa -d cuda
// ex1 -fa -d cuda
// * ex1 -fa -d cuda
// ex1 -pa -d raja-cuda
// * ex1 -pa -d raja-hip
// ex1 -pa -d occa-cuda
+1 -1
View File
@@ -30,7 +30,7 @@
//
// Device sample runs:
// mpirun -np 4 ex1p -pa -d cuda
// mpirun -np 4 ex1p -fa -d cuda
// * mpirun -np 4 ex1p -fa -d cuda
// mpirun -np 4 ex1p -pa -d occa-cuda
// mpirun -np 4 ex1p -pa -d raja-omp
// mpirun -np 4 ex1p -pa -d ceed-cpu
+1 -1
View File
@@ -195,7 +195,7 @@ int main(int argc, char *argv[])
Array<int> ess_tdof_list(0);
if (h1 && pmesh.bdr_attributes.Size())
{
// For a continuous basis the linear system must be modifed to enforce an
// For a continuous basis the linear system must be modified to enforce an
// essential (Dirichlet) boundary condition. In the DG case this is not
// necessary as the boundary condition will only be enforced weakly.
fespace.GetEssentialTrueDofs(dbc_bdr, ess_tdof_list);
-1
View File
@@ -197,7 +197,6 @@ int main(int argc, char *argv[])
SparseMatrix &M(mVarf->SpMat());
SparseMatrix &B(bVarf->SpMat());
B *= -1.;
B.EnsureMultTranspose();
Bt = new TransposeOperator(&B);
darcyOp.SetBlock(0,0, &M);
-1
View File
@@ -187,7 +187,6 @@ int main(int argc, char *argv[])
{
// 1. Initialize MPI and HYPRE.
Mpi::Init(argc, argv);
int num_procs = Mpi::WorldSize();
int myid = Mpi::WorldRank();
Hypre::Init();
+10 -6
View File
@@ -248,7 +248,10 @@ int main(int argc, char *argv[])
// constraints for non-conforming AMR, static condensation, etc.
if (myid == 0) { cout << "matrix ... " << flush; }
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
// Here we want to try out block-size aware AMG solver in PETSc.
// For that to work properly, we need a fully-compliant block-size
// structure and we do not skip zeros when assembling.
a->Assemble(use_petsc ? 0 : 1);
Vector B, X;
if (!use_petsc)
@@ -294,13 +297,14 @@ int main(int argc, char *argv[])
cout << "done." << endl;
cout << "Size of linear system: " << A.M() << endl;
}
PetscPCGSolver *pcg = new PetscPCGSolver(A);
// Tell PETSc the matrix has a block structure
A.SetBlockSize(dim);
// The preconditioner for the PCG solver defined below is specified in the
// PETSc config file, rc_ex2p, since a Krylov solver in PETSc can also
// customize its preconditioner.
// The preconditioner for the PCG solver can be specified in the
// PETSc config file
PetscPCGSolver *pcg = new PetscPCGSolver(A);
PetscPreconditioner *prec = NULL;
if (use_nonoverlapping)
if (use_nonoverlapping) // Specialized BDDC construction
{
// Compute dofs belonging to the natural boundary
Array<int> nat_tdof_list, nat_bdr(pmesh->bdr_attributes.Max());
+1 -1
View File
@@ -450,7 +450,7 @@ int main(int argc, char *argv[])
for (int ti = 0; !done; )
{
// We cannot match exactly the time history of the Run method
// since we are explictly telling PETSc to use a time step
// since we are explicitly telling PETSc to use a time step
double dt_real = min(dt, t_final - t);
ode_solver->Step(*U, t, dt_real);
ti++;
+2
View File
@@ -78,6 +78,7 @@ EX1_ARGS_CUDA := -m ../../data/star.mesh --usepetsc --partial-assembly -
EX1_ARGS_CUDAAMG := -m ../../data/star.mesh --usepetsc --device cuda --petscopts rc_ex1p_cudaamg
EX2_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex2p
EX2_ARGS_BDDC := -m ../../data/beam-tri.mesh --usepetsc --nonoverlapping --petscopts rc_ex2p_bddc
EX2_ARGS_ASM := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex2p_asm
EX3_ARGS := -m ../../data/klein-bottle.mesh -o 2 -f 0.1 --usepetsc --petscopts rc_ex3p_bddc --nonoverlapping
EX4_ARGS := -m ../../data/klein-bottle.mesh -o 2 --usepetsc --petscopts rc_ex4p_bddc --nonoverlapping
EX4_HYB_ARGS := -m ../../data/klein-bottle.mesh -o 2 --usepetsc --petscopts rc_ex4p_bddc --nonoverlapping --hybridization
@@ -109,6 +110,7 @@ endif
ex2p-test-par: ex2p
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX2_ARGS))
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX2_ARGS_BDDC))
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX2_ARGS_ASM))
ex3p-test-par: ex3p
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX3_ARGS))
ex4p-test-par: ex4p
+1 -2
View File
@@ -1,8 +1,7 @@
-ksp_converged_reason
# GAMG is still not used at its best,
# since we are not exploiting the
# block size (Ordering::byVDIM) and the RBMs
# since we are not exploiting the RBMs
-ksp_view
-pc_type gamg
+10
View File
@@ -0,0 +1,10 @@
# Additive Schwarz with Overlap
# This is not a good solver for elasticity
# These options are here only to describe
# the setup of the solver
-ksp_converged_reason
-ksp_view
-ksp_max_it 10
-pc_type asm
-pc_asm_overlap 1
-sub_pc_type icc
+3
View File
@@ -210,6 +210,9 @@ void visualize(ostream &os, Mesh *mesh, GridFunction *deformed_nodes,
int main(int argc, char *argv[])
{
// 0. Initialize SUNDIALS.
Sundials::Init();
// 1. Parse command-line options.
const char *mesh_file = "../../data/beam-quad.mesh";
int ref_levels = 2;
+2 -1
View File
@@ -215,10 +215,11 @@ void visualize(ostream &os, ParMesh *mesh, ParGridFunction *deformed_nodes,
int main(int argc, char *argv[])
{
// 1. Initialize MPI and HYPRE.
// 1. Initialize MPI, HYPRE, and SUNDIALS.
Mpi::Init(argc, argv);
int myid = Mpi::WorldRank();
Hypre::Init();
Sundials::Init();
// 2. Parse command-line options.
const char *mesh_file = "../../data/beam-quad.mesh";
+7 -1
View File
@@ -109,6 +109,9 @@ double InitialTemperature(const Vector &x);
int main(int argc, char *argv[])
{
// 0. Initialize SUNDIALS.
Sundials::Init();
// 1. Parse command-line options.
const char *mesh_file = "../../data/star.mesh";
int ref_levels = 2;
@@ -290,7 +293,10 @@ int main(int argc, char *argv[])
arkode->Init(oper);
arkode->SetSStolerances(reltol, abstol);
arkode->SetMaxStep(dt);
if (ode_solver_type == 11) { arkode->SetERKTableNum(FEHLBERG_13_7_8); }
if (ode_solver_type == 11)
{
arkode->SetERKTableNum(ARKODE_FEHLBERG_13_7_8);
}
ode_solver = arkode; break;
case 12:
arkode = new ARKStepSolver(ARKStepSolver::IMPLICIT);
+6 -2
View File
@@ -101,11 +101,12 @@ double InitialTemperature(const Vector &x);
int main(int argc, char *argv[])
{
// 1. Initialize MPI and HYPRE.
// 1. Initialize MPI, HYPRE, and SUNDIALS.
Mpi::Init(argc, argv);
int num_procs = Mpi::WorldSize();
int myid = Mpi::WorldRank();
Hypre::Init();
Sundials::Init();
// 2. Parse command-line options.
const char *mesh_file = "../../data/star.mesh";
@@ -327,7 +328,10 @@ int main(int argc, char *argv[])
arkode->Init(oper);
arkode->SetSStolerances(reltol, abstol);
arkode->SetMaxStep(dt);
if (ode_solver_type == 11) { arkode->SetERKTableNum(FEHLBERG_13_7_8); }
if (ode_solver_type == 11)
{
arkode->SetERKTableNum(ARKODE_FEHLBERG_13_7_8);
}
ode_solver = arkode; break;
case 12:
arkode = new ARKStepSolver(MPI_COMM_WORLD, ARKStepSolver::IMPLICIT);
+4 -1
View File
@@ -140,6 +140,9 @@ public:
int main(int argc, char *argv[])
{
// 0. Initialize SUNDIALS.
Sundials::Init();
// 1. Parse command-line options.
problem = 0;
const char *mesh_file = "../../data/periodic-hexagon.mesh";
@@ -408,7 +411,7 @@ int main(int argc, char *argv[])
arkode->Init(adv);
arkode->SetSStolerances(reltol, abstol);
arkode->SetMaxStep(dt);
arkode->SetERKTableNum(FEHLBERG_13_7_8);
arkode->SetERKTableNum(ARKODE_FEHLBERG_13_7_8);
ode_solver = arkode; break;
}
+6 -2
View File
@@ -152,11 +152,12 @@ public:
int main(int argc, char *argv[])
{
// 1. Initialize MPI and HYPRE.
// 1. Initialize MPI, HYPRE, and SUNDIALS.
Mpi::Init(argc, argv);
int num_procs = Mpi::WorldSize();
int myid = Mpi::WorldRank();
Hypre::Init();
Sundials::Init();
// 2. Parse command-line options.
problem = 0;
@@ -487,7 +488,10 @@ int main(int argc, char *argv[])
arkode->Init(adv);
arkode->SetSStolerances(reltol, abstol);
arkode->SetMaxStep(dt);
if (ode_solver_type == 9) { arkode->SetERKTableNum(FEHLBERG_13_7_8); }
if (ode_solver_type == 9)
{
arkode->SetERKTableNum(ARKODE_FEHLBERG_13_7_8);
}
ode_solver = arkode; break;
}
+1 -1
View File
@@ -35,7 +35,7 @@ add_mfem_examples(SUPERLU_EXAMPLES_SRCS ${PFX} "" test_superlu)
if (MFEM_ENABLE_TESTING)
# Command line options for the tests.
# Example 1: Test SuperLU on the simple Poisson problem
set(EX1_COMMON_OPTS -m ../../data/star.mesh -p 2)
set(EX1_COMMON_OPTS -m ../../data/star.mesh)
set(EX1P_TEST_OPTS ${EX1_COMMON_OPTS})
# Add the tests: one test per source file.
+9
View File
@@ -39,6 +39,7 @@ set(SRCS
complex_fem.cpp
convergence.cpp
datacollection.cpp
dgmassinv.cpp
doftrans.cpp
eltrans.cpp
estimators.cpp
@@ -72,6 +73,7 @@ set(SRCS
linearform.cpp
linearform_ext.cpp
lininteg.cpp
lininteg_boundary.cpp
lininteg_domain.cpp
lininteg_domain_grad.cpp
lor/lor.cpp
@@ -88,6 +90,7 @@ set(SRCS
fespacehierarchy.cpp
nonlininteg_vectorconvection.cpp
nonlininteg_vectorconvection_mf.cpp
qfunction.cpp
qinterp/det.cpp
qinterp/eval_by_nodes.cpp
qinterp/eval_by_vdim.cpp
@@ -95,6 +98,7 @@ set(SRCS
qinterp/grad_by_vdim.cpp
qinterp/grad_phys_by_nodes.cpp
qinterp/grad_phys_by_vdim.cpp
qspace.cpp
quadinterpolator.cpp
quadinterpolator_face.cpp
restriction.cpp
@@ -136,10 +140,13 @@ set(HDRS
bilinearform.hpp
bilinearform_ext.hpp
bilininteg.hpp
bilininteg_mass_pa.hpp
coefficient.hpp
complex_fem.hpp
convergence.hpp
datacollection.hpp
dgmassinv.hpp
dgmassinv_kernels.hpp
doftrans.hpp
eltrans.hpp
estimators.hpp
@@ -189,9 +196,11 @@ set(HDRS
nonlinearform.hpp
nonlinearform_ext.hpp
nonlininteg.hpp
qfunction.hpp
qinterp/dispatch.hpp
qinterp/eval.hpp
qinterp/grad.hpp
qspace.hpp
quadinterpolator.hpp
quadinterpolator_face.hpp
restriction.hpp
+2 -1
View File
@@ -136,7 +136,7 @@ void BilinearForm::SetAssemblyLevel(AssemblyLevel assembly_level)
ext = new MFBilinearFormExtension(this);
break;
default:
mfem_error("Unknown assembly level");
MFEM_ABORT("BilinearForm: unknown assembly level");
}
}
@@ -992,6 +992,7 @@ void BilinearForm::EliminateVDofs(const Array<int> &vdofs_,
mat_e = new SparseMatrix(height);
}
vdofs_.HostRead();
for (int i = 0; i < vdofs_.Size(); i++)
{
int vdof = vdofs_[i];
+5 -4
View File
@@ -26,7 +26,8 @@ namespace mfem
{
/** @brief Enumeration defining the assembly level for bilinear and nonlinear
form classes derived from Operator. */
form classes derived from Operator. For more details, see
https://mfem.org/howto/assembly_levels */
enum class AssemblyLevel
{
/// In the case of a BilinearForm LEGACY corresponds to a fully assembled
@@ -177,7 +178,7 @@ public:
- AssemblyLevel::ELEMENT
- AssemblyLevel::NONE
This method must be called before assembly. */
If used, this method must be called before assembly. */
void SetAssemblyLevel(AssemblyLevel assembly_level);
/// Returns the assembly level
@@ -333,7 +334,7 @@ public:
/** @brief Nullifies the internal matrix \f$ M \f$ and returns a pointer
to it. Used for transfering ownership. */
to it. Used for transferring ownership. */
SparseMatrix *LoseMat() { SparseMatrix *tmp = mat; mat = NULL; return tmp; }
/** @brief Returns a const reference to the sparse matrix of eliminated b.c.:
@@ -774,7 +775,7 @@ public:
SparseMatrix &SpMat() { return *mat; }
/** @brief Nullifies the internal matrix \f$ M \f$ and returns a pointer
to it. Used for transfering ownership. */
to it. Used for transferring ownership. */
SparseMatrix *LoseMat() { SparseMatrix *tmp = mat; mat = NULL; return tmp; }
/// Adds a domain integrator. Assumes ownership of @a bfi.
+25 -12
View File
@@ -18,6 +18,8 @@
#include "pgridfunc.hpp"
#include "ceed/interface/util.hpp"
#include "../general/nvtx.hpp"
namespace mfem
{
@@ -160,7 +162,7 @@ void MFBilinearFormExtension::Mult(const Vector &x, Vector &y) const
{
intFaceIntegrators[i]->AddMultMF(int_face_X, int_face_Y);
}
int_face_restrict_lex->AddMultTranspose(int_face_Y, y);
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
}
}
@@ -176,7 +178,7 @@ void MFBilinearFormExtension::Mult(const Vector &x, Vector &y) const
{
bdrFaceIntegrators[i]->AddMultMF(bdr_face_X, bdr_face_Y);
}
bdr_face_restrict_lex->AddMultTranspose(bdr_face_Y, y);
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
}
}
}
@@ -217,7 +219,7 @@ void MFBilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
{
intFaceIntegrators[i]->AddMultTransposeMF(int_face_X, int_face_Y);
}
int_face_restrict_lex->AddMultTranspose(int_face_Y, y);
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
}
}
@@ -233,7 +235,7 @@ void MFBilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
{
bdrFaceIntegrators[i]->AddMultTransposeMF(bdr_face_X, bdr_face_Y);
}
bdr_face_restrict_lex->AddMultTranspose(bdr_face_Y, y);
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
}
}
}
@@ -289,6 +291,10 @@ void PABilinearFormExtension::SetupRestrictionOperators(const L2FaceValues m)
void PABilinearFormExtension::Assemble()
{
#undef MFEM_NVTX_COLOR
#define MFEM_NVTX_COLOR NavyBlue
NVTX("HO Assemble");
SetupRestrictionOperators(L2FaceValues::DoubleValued);
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
@@ -383,6 +389,10 @@ void PABilinearFormExtension::FormLinearSystem(const Array<int> &ess_tdof_list,
void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
{
#undef MFEM_NVTX_COLOR
#define MFEM_NVTX_COLOR MediumSpringGreen
NVTX("HO Apply");
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
const int iSz = integrators.Size();
@@ -418,7 +428,7 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
{
intFaceIntegrators[i]->AddMultPA(int_face_X, int_face_Y);
}
int_face_restrict_lex->AddMultTranspose(int_face_Y, y);
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
}
}
@@ -434,7 +444,7 @@ void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
{
bdrFaceIntegrators[i]->AddMultPA(bdr_face_X, bdr_face_Y);
}
bdr_face_restrict_lex->AddMultTranspose(bdr_face_Y, y);
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
}
}
}
@@ -475,7 +485,7 @@ void PABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
{
intFaceIntegrators[i]->AddMultTransposePA(int_face_X, int_face_Y);
}
int_face_restrict_lex->AddMultTranspose(int_face_Y, y);
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
}
}
@@ -491,7 +501,7 @@ void PABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
{
bdrFaceIntegrators[i]->AddMultTransposePA(bdr_face_X, bdr_face_Y);
}
bdr_face_restrict_lex->AddMultTranspose(bdr_face_Y, y);
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
}
}
}
@@ -668,7 +678,7 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
Y(j, 0, f) += res;
});
// Apply the Interior Face Restriction transposed
int_face_restrict_lex->AddMultTranspose(int_face_Y, y);
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
}
}
@@ -699,7 +709,7 @@ void EABilinearFormExtension::Mult(const Vector &x, Vector &y) const
Y(j, f) += res;
});
// Apply the Boundary Face Restriction transposed
bdr_face_restrict_lex->AddMultTranspose(bdr_face_Y, y);
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
}
}
}
@@ -796,7 +806,7 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
Y(j, 0, f) += res;
});
// Apply the Interior Face Restriction transposed
int_face_restrict_lex->AddMultTranspose(int_face_Y, y);
int_face_restrict_lex->AddMultTransposeInPlace(int_face_Y, y);
}
}
@@ -827,7 +837,7 @@ void EABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
Y(j, f) += res;
});
// Apply the Boundary Face Restriction transposed
bdr_face_restrict_lex->AddMultTranspose(bdr_face_Y, y);
bdr_face_restrict_lex->AddMultTransposeInPlace(bdr_face_Y, y);
}
}
}
@@ -975,6 +985,9 @@ void FABilinearFormExtension::RAP(OperatorHandle &A)
void FABilinearFormExtension::EliminateBC(const Array<int> &ess_dofs,
OperatorHandle &A)
{
MFEM_VERIFY(a->diag_policy == DiagonalPolicy::DIAG_ONE,
"Only DiagonalPolicy::DIAG_ONE supported with"
" FABilinearFormExtension.");
#ifdef MFEM_USE_MPI
if ( dynamic_cast<ParBilinearForm*>(a) )
{
+205 -2
View File
@@ -2003,6 +2003,83 @@ void CurlCurlIntegrator::AssembleElementMatrix
}
}
void CurlCurlIntegrator::AssembleElementMatrix2(const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &Trans,
DenseMatrix &elmat)
{
int tr_nd = trial_fe.GetDof();
int te_nd = test_fe.GetDof();
dim = trial_fe.GetDim();
int dimc = trial_fe.GetCurlDim();
double w;
#ifdef MFEM_THREAD_SAFE
Vector D;
DenseMatrix curlshape(tr_nd,dimc), curlshape_dFt(tr_nd,dimc), M;
DenseMatrix te_curlshape(te_nd,dimc), te_curlshape_dFt(te_nd,dimc);
#else
curlshape.SetSize(tr_nd,dimc);
curlshape_dFt.SetSize(tr_nd,dimc);
te_curlshape.SetSize(te_nd,dimc);
te_curlshape_dFt.SetSize(te_nd,dimc);
#endif
elmat.SetSize(te_nd, tr_nd);
if (MQ) { M.SetSize(dimc); }
if (DQ) { D.SetSize(dimc); }
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
int order;
if (trial_fe.Space() == FunctionSpace::Pk)
{
order = test_fe.GetOrder() + trial_fe.GetOrder() - 2;
}
else
{
order = test_fe.GetOrder() + trial_fe.GetOrder() + trial_fe.GetDim() - 1;
}
ir = &IntRules.Get(trial_fe.GetGeomType(), order);
}
elmat = 0.0;
for (int i = 0; i < ir->GetNPoints(); i++)
{
const IntegrationPoint &ip = ir->IntPoint(i);
Trans.SetIntPoint(&ip);
w = ip.weight * Trans.Weight();
trial_fe.CalcPhysCurlShape(Trans, curlshape_dFt);
test_fe.CalcPhysCurlShape(Trans, te_curlshape_dFt);
if (MQ)
{
MQ->Eval(M, Trans, ip);
M *= w;
Mult(te_curlshape_dFt, M, te_curlshape);
AddMultABt(te_curlshape, curlshape_dFt, elmat);
}
else if (DQ)
{
DQ->Eval(D, Trans, ip);
D *= w;
AddMultADBt(te_curlshape_dFt,D,curlshape_dFt,elmat);
}
else
{
if (Q)
{
w *= Q->Eval(Trans, ip);
}
curlshape_dFt *= w;
AddMultABt(te_curlshape_dFt, curlshape_dFt, elmat);
}
}
}
void CurlCurlIntegrator
::ComputeElementFlux(const FiniteElement &el, ElementTransformation &Trans,
Vector &u, const FiniteElement &fluxelem, Vector &flux,
@@ -2240,6 +2317,84 @@ double VectorCurlCurlIntegrator::GetElementEnergy(
return 0.5 * energy;
}
void MixedCurlIntegrator::AssembleElementMatrix2(
const FiniteElement &trial_fe, const FiniteElement &test_fe,
ElementTransformation &Trans, DenseMatrix &elmat)
{
int dim = trial_fe.GetDim();
int trial_dof = trial_fe.GetDof();
int test_dof = test_fe.GetDof();
int dimc = (dim == 3) ? 3 : 1;
MFEM_VERIFY(trial_fe.GetMapType() == mfem::FiniteElement::H_CURL ||
(dim == 2 && trial_fe.GetMapType() == mfem::FiniteElement::VALUE),
"Trial finite element must be either 2D/3D H(Curl) or 2D H1");
MFEM_VERIFY(test_fe.GetMapType() == mfem::FiniteElement::VALUE ||
test_fe.GetMapType() == mfem::FiniteElement::INTEGRAL,
"Test finite element must be in H1/L2");
bool spaceH1 = (trial_fe.GetMapType() == mfem::FiniteElement::VALUE);
if (spaceH1)
{
dshape.SetSize(trial_dof,dim);
curlshape.SetSize(dim*trial_dof,1);
dimc = dim;
}
else
{
curlshape.SetSize(trial_dof,dimc);
elmat_comp.SetSize(test_dof, trial_dof);
}
elmat.SetSize(dimc * test_dof, trial_dof);
shape.SetSize(test_dof);
elmat = 0.0;
double c;
Vector d_col;
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
int order = trial_fe.GetOrder() + test_fe.GetOrder() + Trans.OrderJ();
ir = &IntRules.Get(trial_fe.GetGeomType(), order);
}
for (int i = 0; i < ir->GetNPoints(); i++)
{
const IntegrationPoint &ip = ir->IntPoint(i);
Trans.SetIntPoint(&ip);
if (spaceH1)
{
trial_fe.CalcPhysDShape(Trans, dshape);
dshape.GradToCurl(curlshape);
}
else
{
trial_fe.CalcPhysCurlShape(Trans, curlshape);
}
test_fe.CalcPhysShape(Trans, shape);
c = ip.weight*Trans.Weight();
if (Q)
{
c *= Q->Eval(Trans, ip);
}
shape *= c;
for (int d = 0; d < dimc; ++d)
{
double * curldata = &(curlshape.GetData())[d*trial_dof];
for (int jj = 0; jj < trial_dof; ++jj)
{
for (int ii = 0; ii < test_dof; ++ii)
{
elmat(d * test_dof + ii, jj) += shape(ii) * curldata[jj];
}
}
}
}
}
void VectorFEMassIntegrator::AssembleElementMatrix(
const FiniteElement &el,
@@ -2586,6 +2741,54 @@ void DivDivIntegrator::AssembleElementMatrix(
}
}
void DivDivIntegrator::AssembleElementMatrix2(
const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &Trans,
DenseMatrix &elmat)
{
int tr_nd = trial_fe.GetDof();
int te_nd = test_fe.GetDof();
double c;
#ifdef MFEM_THREAD_SAFE
Vector divshape(tr_nd);
Vector te_divshape(te_nd);
#else
divshape.SetSize(tr_nd);
te_divshape.SetSize(te_nd);
#endif
elmat.SetSize(te_nd,tr_nd);
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
int order = 2 * max(test_fe.GetOrder(),
trial_fe.GetOrder()) - 2; // <--- OK for RTk
ir = &IntRules.Get(test_fe.GetGeomType(), order);
}
elmat = 0.0;
for (int i = 0; i < ir -> GetNPoints(); i++)
{
const IntegrationPoint &ip = ir->IntPoint(i);
trial_fe.CalcDivShape(ip,divshape);
test_fe.CalcDivShape(ip,te_divshape);
Trans.SetIntPoint (&ip);
c = ip.weight / Trans.Weight();
if (Q)
{
c *= Q -> Eval (Trans, ip);
}
te_divshape *= c;
AddMultVWt(te_divshape, divshape, elmat);
}
}
void VectorDiffusionIntegrator::AssembleElementMatrix(
const FiniteElement &el,
@@ -3780,7 +3983,7 @@ void NormalTraceJumpIntegrator::AssembleFaceMatrix(
for (i = 0; i < ndof1; i++)
for (j = 0; j < face_ndof; j++)
{
elmat(i, j) -= shape1_n(i) * face_shape(j);
elmat(i, j) += shape1_n(i) * face_shape(j);
}
if (ndof2)
{
@@ -3788,7 +3991,7 @@ void NormalTraceJumpIntegrator::AssembleFaceMatrix(
for (i = 0; i < ndof2; i++)
for (j = 0; j < face_ndof; j++)
{
elmat(ndof1+i, j) += shape2_n(i) * face_shape(j);
elmat(ndof1+i, j) -= shape2_n(i) * face_shape(j);
}
}
}
+47 -5
View File
@@ -215,10 +215,10 @@ public:
function by any coefficients describing the
integrator.
@param[in] ir If passed (the default value is NULL), the implementation
of the method will ignore the integration rule provided
by the @a fluxelem parameter and, instead, compute the
discrete flux at the points specified by the integration
rule @a ir.
of the method will ignore the integration rule provided
by the @a fluxelem parameter and, instead, compute the
discrete flux at the points specified by the integration
rule @a ir.
*/
virtual void ComputeElementFlux(const FiniteElement &el,
ElementTransformation &Trans,
@@ -2174,6 +2174,7 @@ public:
/** Class for local mass matrix assembling a(u,v) := (Q u, v) */
class MassIntegrator: public BilinearFormIntegrator
{
friend class DGMassInverse;
protected:
#ifndef MFEM_THREAD_SAFE
Vector shape, te_shape;
@@ -2524,6 +2525,7 @@ private:
#ifndef MFEM_THREAD_SAFE
Vector D;
DenseMatrix curlshape, curlshape_dFt, M;
DenseMatrix te_curlshape, te_curlshape_dFt;
DenseMatrix vshape, projcurl;
#endif
@@ -2557,6 +2559,11 @@ public:
ElementTransformation &Trans,
DenseMatrix &elmat);
virtual void AssembleElementMatrix2(const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &Trans,
DenseMatrix &elmat);
virtual void ComputeElementFlux(const FiniteElement &el,
ElementTransformation &Trans,
Vector &u, const FiniteElement &fluxelem,
@@ -2602,6 +2609,35 @@ public:
const Vector &elfun);
};
/** Class for integrating the bilinear form a(u,v) := (Q curl u, v) where Q is
an optional scalar coefficient, and v is a vector with components v_i in
the L2 or H1 space. This integrator handles 3 cases:
(a) u H(curl) in 3D, v is a 3D vector with components v_i in L^2 or H^1
(b) u H(curl) in 2D, v is a scalar field in L^2 or H^1
(c) u is a scalar field in H^1, i.e, curl u := [0 1;-1 0]grad u and v is a
2D vector field with components v_i in L^2 or H^1 space.
Note: Case (b) can also be handled by MixedScalarCurlIntegrator */
class MixedCurlIntegrator : public BilinearFormIntegrator
{
protected:
Coefficient *Q;
private:
Vector shape;
DenseMatrix dshape;
DenseMatrix curlshape;
DenseMatrix elmat_comp;
public:
MixedCurlIntegrator() : Q{NULL} { }
MixedCurlIntegrator(Coefficient *q_) : Q{q_} { }
MixedCurlIntegrator(Coefficient &q) : Q{&q} { }
virtual void AssembleElementMatrix2(const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &Trans,
DenseMatrix &elmat);
};
/** Integrator for (Q u, v), where Q is an optional coefficient (of type scalar,
vector (diagonal matrix), or matrix), trial function u is in H(Curl) or
H(Div), and test function v is in H(Curl), H(Div), or v=(v1,...,vn), where
@@ -2725,7 +2761,7 @@ protected:
private:
#ifndef MFEM_THREAD_SAFE
Vector divshape;
Vector divshape, te_divshape;
#endif
// PA extension
@@ -2743,6 +2779,12 @@ public:
virtual void AssembleElementMatrix(const FiniteElement &el,
ElementTransformation &Trans,
DenseMatrix &elmat);
virtual void AssembleElementMatrix2(const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &Trans,
DenseMatrix &elmat);
const Coefficient *GetCoefficient() const { return Q; }
};
+3 -58
View File
@@ -12,6 +12,7 @@
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "qfunction.hpp"
#include "ceed/integrators/convection/convection.hpp"
#include "quadinterpolator.hpp"
@@ -1408,66 +1409,10 @@ void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
dofs1D = maps->ndof;
quad1D = maps->nqpt;
pa_data.SetSize(symmDims * nq * ne, mt);
Vector vel;
if (VectorConstantCoefficient *cQ =
dynamic_cast<VectorConstantCoefficient*>(Q))
{
vel = cQ->GetVec();
}
else if (VectorGridFunctionCoefficient *vgfQ =
dynamic_cast<VectorGridFunctionCoefficient*>(Q))
{
vel.SetSize(dim * nq * ne, mt);
const GridFunction *gf = vgfQ->GetGridFunction();
const FiniteElementSpace &gf_fes = *gf->FESpace();
const QuadratureInterpolator *qi(gf_fes.GetQuadratureInterpolator(*ir));
const bool use_tensor_products = UsesTensorBasis(gf_fes);
const ElementDofOrdering ordering = use_tensor_products ?
ElementDofOrdering::LEXICOGRAPHIC :
ElementDofOrdering::NATIVE;
const Operator *R = gf_fes.GetElementRestriction(ordering);
QuadratureSpace qs(*mesh, *ir);
CoefficientVector vel(*Q, qs, CoefficientStorage::COMPRESSED);
Vector xe(R->Height(), mt);
xe.UseDevice(true);
R->Mult(*gf, xe);
qi->SetOutputLayout(QVectorLayout::byVDIM);
qi->DisableTensorProducts(!use_tensor_products);
qi->Values(xe,vel);
}
else if (VectorQuadratureFunctionCoefficient* vqfQ =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(Q))
{
const QuadratureFunction &qFun = vqfQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == dim * nq * ne,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
vel.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
{
vel.SetSize(dim * nq * ne);
auto C = Reshape(vel.HostWrite(), dim, nq, ne);
DenseMatrix MQ_ir;
for (int e = 0; e < ne; ++e)
{
ElementTransformation& T = *fes.GetElementTransformation(e);
Q->Eval(MQ_ir, T, *ir);
for (int q = 0; q < nq; ++q)
{
for (int i = 0; i < dim; ++i)
{
C(i,q,e) = MQ_ir(i,q);
}
}
}
}
PAConvectionSetup(dim, nq, ne, ir->GetWeights(), geom->J,
vel, alpha, pa_data);
}
+38 -104
View File
@@ -12,6 +12,7 @@
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "qfunction.hpp"
#include "restriction.hpp"
using namespace std;
@@ -161,88 +162,24 @@ void DGTraceIntegrator::SetupPA(const FiniteElementSpace &fes, FaceType type)
dofs1D = maps->ndof;
quad1D = maps->nqpt;
pa_data.SetSize(symmDims * nq * nf, Device::GetMemoryType());
Vector vel;
if (VectorConstantCoefficient *c_u = dynamic_cast<VectorConstantCoefficient*>
(u))
{
vel = c_u->GetVec();
}
else if (VectorQuadratureFunctionCoefficient* qf_u =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(u))
{
// Assumed to be in lexicographical ordering
const QuadratureFunction &qFun = qf_u->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == dim * nq * nf,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
vel.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
FaceQuadratureSpace qs(*mesh, *ir, type);
CoefficientVector vel(*u, qs, CoefficientStorage::COMPRESSED);
CoefficientVector r(qs, CoefficientStorage::COMPRESSED);
if (rho == nullptr)
{
vel.SetSize(dim * nq * nf);
auto C = Reshape(vel.HostWrite(), dim, nq, nf);
Vector Vq(dim);
int f_ind = 0;
for (int f = 0; f < mesh->GetNumFacesWithGhost(); ++f)
{
Mesh::FaceInformation face = mesh->GetFaceInformation(f);
if (face.IsNonconformingCoarse())
{
// We skip nonconforming coarse faces as they are treated
// by the corresponding nonconforming fine faces.
continue;
}
else if ( face.IsOfFaceType(type) )
{
const int mask = FaceElementTransformations::HAVE_ELEM1 |
FaceElementTransformations::HAVE_LOC1;
FaceElementTransformations &T =
*fes.GetMesh()->GetFaceElementTransformations(f, mask);
for (int q = 0; q < nq; ++q)
{
// Convert to lexicographic ordering
int iq = ToLexOrdering(dim, face.element[0].local_face_id,
quad1D, q);
T.SetAllIntPoints(&ir->IntPoint(q));
const IntegrationPoint &eip1 = T.GetElement1IntPoint();
u->Eval(Vq, *T.Elem1, eip1);
for (int i = 0; i < dim; ++i)
{
C(i,iq,f_ind) = Vq(i);
}
}
f_ind++;
}
}
MFEM_VERIFY(f_ind==nf, "Incorrect number of faces.");
r.SetConstant(1.0);
}
Vector r;
if (rho==nullptr)
else if (ConstantCoefficient *const_rho = dynamic_cast<ConstantCoefficient*>
(rho))
{
r.SetSize(1);
r(0) = 1.0;
}
else if (ConstantCoefficient *c_rho = dynamic_cast<ConstantCoefficient*>(rho))
{
r.SetSize(1);
r(0) = c_rho->constant;
r.SetConstant(const_rho->constant);
}
else if (QuadratureFunctionCoefficient* qf_rho =
dynamic_cast<QuadratureFunctionCoefficient*>(rho))
{
const QuadratureFunction &qFun = qf_rho->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == nq * nf,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
r.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
r.MakeRef(qf_rho->GetQuadFunction());
}
else
{
@@ -254,45 +191,42 @@ void DGTraceIntegrator::SetupPA(const FiniteElementSpace &fes, FaceType type)
for (int f = 0; f < mesh->GetNumFacesWithGhost(); ++f)
{
Mesh::FaceInformation face = mesh->GetFaceInformation(f);
if (face.IsNonconformingCoarse())
if (face.IsNonconformingCoarse() || !face.IsOfFaceType(type))
{
// We skip nonconforming coarse faces as they are treated
// by the corresponding nonconforming fine faces.
continue;
}
else if ( face.IsOfFaceType(type) )
FaceElementTransformations &T =
*fes.GetMesh()->GetFaceElementTransformations(f);
for (int q = 0; q < nq; ++q)
{
FaceElementTransformations &T =
*fes.GetMesh()->GetFaceElementTransformations(f);
for (int q = 0; q < nq; ++q)
// Convert to lexicographic ordering
int iq = ToLexOrdering(dim, face.element[0].local_face_id,
quad1D, q);
T.SetAllIntPoints(&ir->IntPoint(q));
const IntegrationPoint &eip1 = T.GetElement1IntPoint();
const IntegrationPoint &eip2 = T.GetElement2IntPoint();
double rq;
if (face.IsBoundary())
{
// Convert to lexicographic ordering
int iq = ToLexOrdering(dim, face.element[0].local_face_id,
quad1D, q);
T.SetAllIntPoints(&ir->IntPoint(q));
const IntegrationPoint &eip1 = T.GetElement1IntPoint();
const IntegrationPoint &eip2 = T.GetElement2IntPoint();
double rq;
if ( face.IsBoundary() )
{
rq = rho->Eval(*T.Elem1, eip1);
}
else
{
double udotn = 0.0;
for (int d=0; d<dim; ++d)
{
udotn += C_vel(d,iq,f_ind)*n(iq,d,f_ind);
}
if (udotn >= 0.0) { rq = rho->Eval(*T.Elem2, eip2); }
else { rq = rho->Eval(*T.Elem1, eip1); }
}
C(iq,f_ind) = rq;
rq = rho->Eval(*T.Elem1, eip1);
}
f_ind++;
else
{
double udotn = 0.0;
for (int d=0; d<dim; ++d)
{
udotn += C_vel(d,iq,f_ind)*n(iq,d,f_ind);
}
if (udotn >= 0.0) { rq = rho->Eval(*T.Elem2, eip2); }
else { rq = rho->Eval(*T.Elem1, eip1); }
}
C(iq,f_ind) = rq;
}
f_ind++;
}
MFEM_VERIFY(f_ind==nf, "Incorrect number of faces.");
}
+21 -112
View File
@@ -12,6 +12,7 @@
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "qfunction.hpp"
#include "ceed/integrators/diffusion/diffusion.hpp"
using namespace std;
@@ -390,120 +391,21 @@ void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
maps = &el.GetDofToQuad(*ir, DofToQuad::TENSOR);
dofs1D = maps->ndof;
quad1D = maps->nqpt;
int coeffDim = 1;
Vector coeff;
const int MQfullDim = MQ ? MQ->GetHeight() * MQ->GetWidth() : 0;
if (auto *SMQ = dynamic_cast<SymmetricMatrixCoefficient *>(MQ))
{
MFEM_VERIFY(SMQ->GetSize() == dim, "");
coeffDim = symmDims;
coeff.SetSize(symmDims * nq * ne);
DenseSymmetricMatrix sym_mat;
sym_mat.SetSize(dim);
QuadratureSpace qs(*mesh, *ir);
CoefficientVector coeff(qs, CoefficientStorage::COMPRESSED);
auto C = Reshape(coeff.HostWrite(), symmDims, nq, ne);
if (MQ) { coeff.ProjectTranspose(*MQ); }
else if (VQ) { coeff.Project(*VQ); }
else if (Q) { coeff.Project(*Q); }
else { coeff.SetConstant(1.0); }
for (int e=0; e<ne; ++e)
{
ElementTransformation *tr = mesh->GetElementTransformation(e);
for (int p=0; p<nq; ++p)
{
SMQ->Eval(sym_mat, *tr, ir->IntPoint(p));
int cnt = 0;
for (int i=0; i<dim; ++i)
for (int j=i; j<dim; ++j, ++cnt)
{
C(cnt, p, e) = sym_mat(i,j);
}
}
}
}
else if (MQ)
{
symmetric = false;
MFEM_VERIFY(MQ->GetHeight() == dim && MQ->GetWidth() == dim, "");
const int coeff_dim = coeff.GetVDim();
symmetric = (coeff_dim != dims*dims);
const int pa_size = symmetric ? symmDims : dims*dims;
coeffDim = MQfullDim;
coeff.SetSize(MQfullDim * nq * ne);
DenseMatrix mat;
mat.SetSize(dim);
auto C = Reshape(coeff.HostWrite(), MQfullDim, nq, ne);
for (int e=0; e<ne; ++e)
{
ElementTransformation *tr = mesh->GetElementTransformation(e);
for (int p=0; p<nq; ++p)
{
MQ->Eval(mat, *tr, ir->IntPoint(p));
for (int i=0; i<dim; ++i)
for (int j=0; j<dim; ++j)
{
C(j+(i*dim), p, e) = mat(i,j);
}
}
}
}
else if (VQ)
{
MFEM_VERIFY(VQ->GetVDim() == dim, "");
coeffDim = VQ->GetVDim();
coeff.SetSize(coeffDim * nq * ne);
auto C = Reshape(coeff.HostWrite(), coeffDim, nq, ne);
Vector DM(coeffDim);
for (int e=0; e<ne; ++e)
{
ElementTransformation *tr = mesh->GetElementTransformation(e);
for (int p=0; p<nq; ++p)
{
VQ->Eval(DM, *tr, ir->IntPoint(p));
for (int i=0; i<coeffDim; ++i)
{
C(i, p, e) = DM[i];
}
}
}
}
else if (Q == nullptr)
{
coeff.SetSize(1);
coeff(0) = 1.0;
}
else if (ConstantCoefficient* cQ = dynamic_cast<ConstantCoefficient*>(Q))
{
coeff.SetSize(1);
coeff(0) = cQ->constant;
}
else if (QuadratureFunctionCoefficient* qfQ =
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
{
const QuadratureFunction &qFun = qfQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == ne*nq,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
{
coeff.SetSize(nq * ne);
auto C = Reshape(coeff.HostWrite(), nq, ne);
for (int e = 0; e < ne; ++e)
{
ElementTransformation& T = *fes.GetElementTransformation(e);
for (int q = 0; q < nq; ++q)
{
C(q,e) = Q->Eval(T, ir->IntPoint(q));
}
}
}
pa_data.SetSize((symmetric ? symmDims : MQfullDim) * nq * ne, mt);
PADiffusionSetup(dim, sdim, dofs1D, quad1D, coeffDim, ne, ir->GetWeights(),
pa_data.SetSize(pa_size * nq * ne, mt);
PADiffusionSetup(dim, sdim, dofs1D, quad1D, coeff_dim, ne, ir->GetWeights(),
geom->J, coeff, pa_data);
}
@@ -1784,7 +1686,7 @@ static void PADiffusionApply(const int dim,
case 0x77: return SmemPADiffusionApply2D<7,7,4>(NE,symm,B,G,D,X,Y);
case 0x88: return SmemPADiffusionApply2D<8,8,2>(NE,symm,B,G,D,X,Y);
case 0x99: return SmemPADiffusionApply2D<9,9,2>(NE,symm,B,G,D,X,Y);
default: return PADiffusionApply2D(NE,symm,B,G,Bt,Gt,D,X,Y,D1D,Q1D);
// default: return PADiffusionApply2D(NE,symm,B,G,Bt,Gt,D,X,Y,D1D,Q1D);
}
}
@@ -1802,7 +1704,14 @@ static void PADiffusionApply(const int dim,
case 0x67: return SmemPADiffusionApply3D<6,7>(NE,symm,B,G,D,X,Y);
case 0x78: return SmemPADiffusionApply3D<7,8>(NE,symm,B,G,D,X,Y);
case 0x89: return SmemPADiffusionApply3D<8,9>(NE,symm,B,G,D,X,Y);
default: return PADiffusionApply3D(NE,symm,B,G,Bt,Gt,D,X,Y,D1D,Q1D);
case 0x33: return SmemPADiffusionApply3D<3,3>(NE,symm,B,G,D,X,Y);
case 0x44: return SmemPADiffusionApply3D<4,4>(NE,symm,B,G,D,X,Y);
case 0x55: return SmemPADiffusionApply3D<5,5>(NE,symm,B,G,D,X,Y);
case 0x66: return SmemPADiffusionApply3D<6,6>(NE,symm,B,G,D,X,Y);
case 0x77: return SmemPADiffusionApply3D<7,7>(NE,symm,B,G,D,X,Y);
case 0x88: return SmemPADiffusionApply3D<8,8>(NE,symm,B,G,D,X,Y);
case 0x99: return SmemPADiffusionApply3D<9,9>(NE,symm,B,G,D,X,Y);
// default: return PADiffusionApply3D(NE,symm,B,G,Bt,Gt,D,X,Y,D1D,Q1D);
}
}
MFEM_ABORT("Unknown kernel: 0x"<<std::hex << id << std::dec);
+3 -39
View File
@@ -12,6 +12,7 @@
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "qfunction.hpp"
using namespace std;
@@ -209,44 +210,8 @@ void GradientIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
"PA requires test and trial space to have same number of quadrature points!");
pa_data.SetSize(nq * dimsToStore * ne, Device::GetMemoryType());
Vector coeff;
if (Q == nullptr)
{
coeff.SetSize(1);
coeff(0) = 1.0;
}
else if (ConstantCoefficient* cQ = dynamic_cast<ConstantCoefficient*>(Q))
{
coeff.SetSize(1);
coeff(0) = cQ->constant;
}
else if (QuadratureFunctionCoefficient* qfQ =
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
{
const QuadratureFunction &qFun = qfQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == ne*nq,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
{
coeff.SetSize(nq * ne);
auto C = Reshape(coeff.HostWrite(), nq, ne);
for (int e = 0; e < ne; ++e)
{
ElementTransformation& T = *trial_fes.GetElementTransformation(e);
for (int q = 0; q < nq; ++q)
{
C(q,e) = Q->Eval(T, ir->IntPoint(q));
}
}
}
QuadratureSpace qs(*mesh, *ir);
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
PAGradientSetup(dim, trial_dofs1D, test_dofs1D, quad1D,
ne, ir->GetWeights(), geom->J, coeff, pa_data);
@@ -865,4 +830,3 @@ void GradientIntegrator::AddMultTransposePA(const Vector &x, Vector &y) const
}
} // namespace mfem
+33 -169
View File
@@ -12,6 +12,7 @@
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "qspace.hpp"
using namespace std;
@@ -967,8 +968,6 @@ void CurlCurlIntegrator::AssemblePA(const FiniteElementSpace &fes)
dim = mesh->Dimension();
MFEM_VERIFY(dim == 2 || dim == 3, "");
const int dimc = (dim == 3) ? 3 : 1;
ne = fes.GetNE();
geom = mesh->GetGeometricFactors(*ir, GeometricFactors::JACOBIANS);
mapsC = &el->GetDofToQuad(*ir, DofToQuad::TENSOR);
@@ -978,88 +977,19 @@ void CurlCurlIntegrator::AssemblePA(const FiniteElementSpace &fes)
MFEM_VERIFY(dofs1D == mapsO->ndof + 1 && quad1D == mapsO->nqpt, "");
auto SMQ = dynamic_cast<SymmetricMatrixCoefficient *>(MQ);
QuadratureSpace qs(*mesh, *ir);
CoefficientVector coeff(qs, CoefficientStorage::SYMMETRIC);
if (Q) { coeff.Project(*Q); }
else if (MQ) { coeff.ProjectTranspose(*MQ); }
else if (DQ) { coeff.Project(*DQ); }
else { coeff.SetConstant(1.0); }
const int MQsymmDim = SMQ ? (SMQ->GetSize() * (SMQ->GetSize() + 1)) / 2 : 0;
const int MQfullDim = MQ ? (MQ->GetHeight() * MQ->GetWidth()) : 0;
const int MQdim = SMQ ? MQsymmDim : MQfullDim;
const int coeffDim = MQ ? MQdim : (DQ ? DQ->GetVDim() : 1);
symmetric = (SMQ || MQ == NULL);
const int symmDims = (dims * (dims + 1)) / 2; // 1x1: 1, 2x2: 3, 3x3: 6
const int ndata = (dim == 2) ? 1 : (symmetric ? symmDims : MQfullDim);
const int coeff_dim = coeff.GetVDim();
symmetric = (coeff_dim != dim*dim);
const int sym_dims = (dims * (dims + 1)) / 2; // 1x1: 1, 2x2: 3, 3x3: 6
const int ndata = (dim == 2) ? 1 : (symmetric ? sym_dims : dim*dim);
pa_data.SetSize(ndata * nq * ne, Device::GetMemoryType());
Vector coeff(coeffDim * ne * nq);
coeff = 1.0;
auto coeffh = Reshape(coeff.HostWrite(), coeffDim, nq, ne);
if (Q || DQ || MQ)
{
Vector DM(DQ ? coeffDim : 0);
DenseMatrix GM;
DenseSymmetricMatrix SM;
if (DQ)
{
MFEM_VERIFY(coeffDim == dimc, "");
}
if (SMQ)
{
SM.SetSize(dimc);
MFEM_VERIFY(SMQ->GetSize() == dimc, "");
}
else if (MQ)
{
GM.SetSize(dimc);
MFEM_VERIFY(coeffDim == MQdim, "");
MFEM_VERIFY(MQ->GetHeight() == dimc && MQ->GetWidth() == dimc, "");
}
for (int e=0; e<ne; ++e)
{
ElementTransformation *tr = mesh->GetElementTransformation(e);
for (int p=0; p<nq; ++p)
{
if (SMQ)
{
SMQ->Eval(SM, *tr, ir->IntPoint(p));
int cnt = 0;
for (int i=0; i<dimc; ++i)
for (int j=i; j<dimc; ++j, ++cnt)
{
coeffh(cnt, p, e) = SM(i,j);
}
}
else if (MQ)
{
MQ->Eval(GM, *tr, ir->IntPoint(p));
for (int i=0; i<dimc; ++i)
for (int j=0; j<dimc; ++j)
{
coeffh(j+(i*dimc), p, e) = GM(i,j);
}
}
else if (DQ)
{
DQ->Eval(DM, *tr, ir->IntPoint(p));
for (int i=0; i<coeffDim; ++i)
{
coeffh(i, p, e) = DM[i];
}
}
else
{
coeffh(0, p, e) = Q->Eval(*tr, ir->IntPoint(p));
}
}
}
}
if (el->GetDerivType() != mfem::FiniteElement::CURL)
{
MFEM_ABORT("Unknown kernel.");
@@ -1067,7 +997,7 @@ void CurlCurlIntegrator::AssemblePA(const FiniteElementSpace &fes)
if (dim == 3)
{
PACurlCurlSetup3D(quad1D, coeffDim, ne, ir->GetWeights(), geom->J, coeff,
PACurlCurlSetup3D(quad1D, coeff_dim, ne, ir->GetWeights(), geom->J, coeff,
pa_data);
}
else
@@ -2780,7 +2710,7 @@ void CurlCurlIntegrator::AssembleDiagonalPA(Vector& diag)
}
}
// Apply to x corresponding to DOF's in H^1 (trial), whose gradients are
// Apply to x corresponding to DOFs in H^1 (trial), whose gradients are
// integrated against H(curl) test functions corresponding to y.
void PAHcurlH1Apply3D(const int D1D,
const int Q1D,
@@ -2970,7 +2900,7 @@ void PAHcurlH1Apply3D(const int D1D,
}); // end of element loop
}
// Apply to x corresponding to DOF's in H(curl), integrated
// Apply to x corresponding to DOFs in H(curl), integrated
// against gradients of H^1 functions corresponding to y.
void PAHcurlH1ApplyTranspose3D(const int D1D,
const int Q1D,
@@ -3169,7 +3099,7 @@ void PAHcurlH1ApplyTranspose3D(const int D1D,
}); // end of element loop
}
// Apply to x corresponding to DOF's in H^1 (trial), whose gradients are
// Apply to x corresponding to DOFs in H^1 (trial), whose gradients are
// integrated against H(curl) test functions corresponding to y.
void PAHcurlH1Apply2D(const int D1D,
const int Q1D,
@@ -3293,7 +3223,7 @@ void PAHcurlH1Apply2D(const int D1D,
}); // end of element loop
}
// Apply to x corresponding to DOF's in H(curl), integrated
// Apply to x corresponding to DOFs in H(curl), integrated
// against gradients of H^1 functions corresponding to y.
void PAHcurlH1ApplyTranspose2D(const int D1D,
const int Q1D,
@@ -3489,20 +3419,8 @@ void MixedScalarCurlIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
pa_data.SetSize(nq * ne, Device::GetMemoryType());
Vector coeff(ne * nq);
coeff = 1.0;
auto coeffh = Reshape(coeff.HostWrite(), nq, ne);
if (Q)
{
for (int e=0; e<ne; ++e)
{
ElementTransformation *tr = mesh->GetElementTransformation(e);
for (int p=0; p<nq; ++p)
{
coeffh(p, e) = Q->Eval(*tr, ir->IntPoint(p));
}
}
}
QuadratureSpace qs(*mesh, *ir);
CoefficientVector coeff(Q, qs, CoefficientStorage::FULL);
if (dim == 2)
{
@@ -3593,38 +3511,11 @@ void MixedVectorCurlIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
const int ndata = curlSpaces ? (coeffDim == 1 ? 1 : 9) : symmDims;
pa_data.SetSize(ndata * nq * ne, Device::GetMemoryType());
Vector coeff(coeffDim * nq * ne);
coeff = 1.0;
auto coeffh = Reshape(coeff.HostWrite(), coeffDim, nq, ne);
if (Q || DQ)
{
Vector V(coeffDim);
if (DQ)
{
MFEM_VERIFY(DQ->GetVDim() == coeffDim, "");
}
for (int e=0; e<ne; ++e)
{
ElementTransformation *tr = mesh->GetElementTransformation(e);
for (int p=0; p<nq; ++p)
{
if (DQ)
{
DQ->Eval(V, *tr, ir->IntPoint(p));
for (int i=0; i<coeffDim; ++i)
{
coeffh(i, p, e) = V[i];
}
}
else
{
coeffh(0, p, e) = Q->Eval(*tr, ir->IntPoint(p));
}
}
}
}
QuadratureSpace qs(*mesh, *ir);
CoefficientVector coeff(qs, CoefficientStorage::FULL);
if (Q) { coeff.Project(*Q); }
else if (DQ) { coeff.Project(*DQ); }
else { coeff.SetConstant(1.0); }
if (testType == mfem::FiniteElement::CURL &&
trialType == mfem::FiniteElement::CURL && dim == 3)
@@ -3652,7 +3543,7 @@ void MixedVectorCurlIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
}
}
// Apply to x corresponding to DOF's in H(curl) (trial), whose curl is
// Apply to x corresponding to DOFs in H(curl) (trial), whose curl is
// integrated against H(curl) test functions corresponding to y.
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
static void PAHcurlL2Apply3D(const int D1D,
@@ -4015,7 +3906,7 @@ static void PAHcurlL2Apply3D(const int D1D,
}); // end of element loop
}
// Apply to x corresponding to DOF's in H(curl) (trial), whose curl is
// Apply to x corresponding to DOFs in H(curl) (trial), whose curl is
// integrated against H(curl) test functions corresponding to y.
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
static void SmemPAHcurlL2Apply3D(const int D1D,
@@ -4325,7 +4216,7 @@ static void SmemPAHcurlL2Apply3D(const int D1D,
ForallWrap<3>(true, NE, device_kernel, host_kernel, Q1D, Q1D, Q1D);
}
// Apply to x corresponding to DOF's in H(curl) (trial), whose curl is
// Apply to x corresponding to DOFs in H(curl) (trial), whose curl is
// integrated against H(div) test functions corresponding to y.
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
static void PAHcurlHdivApply3D(const int D1D,
@@ -4681,7 +4572,7 @@ static void PAHcurlHdivApply3D(const int D1D,
}); // end of element loop
}
// Apply to x corresponding to DOF's in H(div) (test), integrated against the
// Apply to x corresponding to DOFs in H(div) (test), integrated against the
// curl of H(curl) trial functions corresponding to y.
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
static void PAHcurlHdivApply3DTranspose(const int D1D,
@@ -5146,38 +5037,11 @@ void MixedVectorWeakCurlIntegrator::AssemblePA(const FiniteElementSpace
pa_data.SetSize(ndata * nq * ne, Device::GetMemoryType());
Vector coeff(coeffDim * nq * ne);
coeff = 1.0;
auto coeffh = Reshape(coeff.HostWrite(), coeffDim, nq, ne);
if (Q || DQ)
{
Vector V(coeffDim);
if (DQ)
{
MFEM_VERIFY(DQ->GetVDim() == coeffDim, "");
}
for (int e=0; e<ne; ++e)
{
ElementTransformation *tr = mesh->GetElementTransformation(e);
for (int p=0; p<nq; ++p)
{
if (DQ)
{
DQ->Eval(V, *tr, ir->IntPoint(p));
for (int i=0; i<coeffDim; ++i)
{
coeffh(i, p, e) = V[i];
}
}
else
{
coeffh(0, p, e) = Q->Eval(*tr, ir->IntPoint(p));
}
}
}
}
QuadratureSpace qs(*mesh, *ir);
CoefficientVector coeff(qs, CoefficientStorage::FULL);
if (Q) { coeff.Project(*Q); }
else if (DQ) { coeff.Project(*DQ); }
else { coeff.SetConstant(1.0); }
if (trialType == mfem::FiniteElement::CURL && dim == 3)
{
@@ -5203,7 +5067,7 @@ void MixedVectorWeakCurlIntegrator::AssemblePA(const FiniteElementSpace
}
}
// Apply to x corresponding to DOF's in H(curl) (trial), integrated against curl
// Apply to x corresponding to DOFs in H(curl) (trial), integrated against curl
// of H(curl) test functions corresponding to y.
template<int MAX_D1D = HCURL_MAX_D1D, int MAX_Q1D = HCURL_MAX_Q1D>
static void PAHcurlL2Apply3DTranspose(const int D1D,
+7 -28
View File
@@ -12,6 +12,7 @@
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "qspace.hpp"
using namespace std;
@@ -1513,19 +1514,8 @@ void DivDivIntegrator::AssemblePA(const FiniteElementSpace &fes)
pa_data.SetSize(nq * ne, Device::GetMemoryType());
Vector coeff(ne * nq);
coeff = 1.0;
if (Q)
{
for (int e=0; e<ne; ++e)
{
ElementTransformation *tr = mesh->GetElementTransformation(e);
for (int p=0; p<nq; ++p)
{
coeff[p + (e * nq)] = Q->Eval(*tr, ir->IntPoint(p));
}
}
}
QuadratureSpace qs(*mesh, *ir);
CoefficientVector coeff(Q, qs, CoefficientStorage::FULL);
if (el->GetDerivType() == mfem::FiniteElement::DIV && dim == 3)
{
@@ -1783,19 +1773,8 @@ VectorFEDivergenceIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
pa_data.SetSize(nq * ne, Device::GetMemoryType());
Vector coeff(ne * nq);
coeff = 1.0;
if (Q)
{
for (int e=0; e<ne; ++e)
{
ElementTransformation *tr = mesh->GetElementTransformation(e);
for (int p=0; p<nq; ++p)
{
coeff[p + (e * nq)] = Q->Eval(*tr, ir->IntPoint(p));
}
}
}
QuadratureSpace qs(*mesh, *ir);
CoefficientVector coeff(Q, qs, CoefficientStorage::FULL);
if (test_el->GetMapType() == FiniteElement::INTEGRAL)
{
@@ -1818,7 +1797,7 @@ VectorFEDivergenceIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
}
}
// Apply to x corresponding to DOF's in H(div) (trial), whose divergence is
// Apply to x corresponding to DOFs in H(div) (trial), whose divergence is
// integrated against L_2 test functions corresponding to y.
static void PAHdivL2Apply3D(const int D1D,
const int Q1D,
@@ -1981,7 +1960,7 @@ static void PAHdivL2Apply3D(const int D1D,
}); // end of element loop
}
// Apply to x corresponding to DOF's in H(div) (trial), whose divergence is
// Apply to x corresponding to DOFs in H(div) (trial), whose divergence is
// integrated against L_2 test functions corresponding to y.
static void PAHdivL2Apply2D(const int D1D,
const int Q1D,
+35 -544
View File
@@ -12,7 +12,9 @@
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "qfunction.hpp"
#include "ceed/integrators/mass/mass.hpp"
#include "bilininteg_mass_pa.hpp"
using namespace std;
@@ -60,43 +62,10 @@ void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
dofs1D = maps->ndof;
quad1D = maps->nqpt;
pa_data.SetSize(ne*nq, mt);
Vector coeff;
if (Q == nullptr)
{
coeff.SetSize(1);
coeff(0) = 1.0;
}
else if (ConstantCoefficient* cQ = dynamic_cast<ConstantCoefficient*>(Q))
{
coeff.SetSize(1);
coeff(0) = cQ->constant;
}
else if (QuadratureFunctionCoefficient* qfQ =
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
{
const QuadratureFunction &qFun = qfQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == nq * ne,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
{
coeff.SetSize(nq * ne);
auto C = Reshape(coeff.HostWrite(), nq, ne);
for (int e = 0; e < ne; ++e)
{
ElementTransformation& T = *fes.GetElementTransformation(e);
for (int q = 0; q < nq; ++q)
{
C(q,e) = Q->Eval(T, ir->IntPoint(q));
}
}
}
QuadratureSpace qs(*mesh, *ir);
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
if (dim==1) { MFEM_ABORT("Not supported yet... stay tuned!"); }
if (dim==2)
{
@@ -590,85 +559,18 @@ static void PAMassApply2D(const int NE,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
MFEM_VERIFY(D1D <= MAX_D1D, "");
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto B = Reshape(b_.Read(), Q1D, D1D);
auto Bt = Reshape(bt_.Read(), D1D, Q1D);
auto D = Reshape(d_.Read(), Q1D, Q1D, NE);
auto X = Reshape(x_.Read(), D1D, D1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
MFEM_VERIFY(T_D1D ? T_D1D : d1d <= MAX_D1D, "");
MFEM_VERIFY(T_Q1D ? T_Q1D : q1d <= MAX_Q1D, "");
const auto B = b_.Read();
const auto Bt = bt_.Read();
const auto D = d_.Read();
const auto X = x_.Read();
auto Y = y_.ReadWrite();
MFEM_FORALL(e, NE,
{
const int D1D = T_D1D ? T_D1D : d1d; // nvcc workaround
const int Q1D = T_Q1D ? T_Q1D : q1d;
// the following variables are evaluated at compile time
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
double sol_xy[max_Q1D][max_Q1D];
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xy[qy][qx] = 0.0;
}
}
for (int dy = 0; dy < D1D; ++dy)
{
double sol_x[max_Q1D];
for (int qy = 0; qy < Q1D; ++qy)
{
sol_x[qy] = 0.0;
}
for (int dx = 0; dx < D1D; ++dx)
{
const double s = X(dx,dy,e);
for (int qx = 0; qx < Q1D; ++qx)
{
sol_x[qx] += B(qx,dx)* s;
}
}
for (int qy = 0; qy < Q1D; ++qy)
{
const double d2q = B(qy,dy);
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xy[qy][qx] += d2q * sol_x[qx];
}
}
}
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xy[qy][qx] *= D(qx,qy,e);
}
}
for (int qy = 0; qy < Q1D; ++qy)
{
double sol_x[max_D1D];
for (int dx = 0; dx < D1D; ++dx)
{
sol_x[dx] = 0.0;
}
for (int qx = 0; qx < Q1D; ++qx)
{
const double s = sol_xy[qy][qx];
for (int dx = 0; dx < D1D; ++dx)
{
sol_x[dx] += Bt(dx,qx) * s;
}
}
for (int dy = 0; dy < D1D; ++dy)
{
const double q2d = Bt(dy,qy);
for (int dx = 0; dx < D1D; ++dx)
{
Y(dx,dy,e) += q2d * sol_x[dx];
}
}
}
internal::PAMassApply2D_Element(e, NE, B, Bt, D, X, Y, d1d, q1d);
});
}
@@ -690,108 +592,13 @@ static void SmemPAMassApply2D(const int NE,
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_VERIFY(D1D <= MD1, "");
MFEM_VERIFY(Q1D <= MQ1, "");
auto b = Reshape(b_.Read(), Q1D, D1D);
auto D = Reshape(d_.Read(), Q1D, Q1D, NE);
auto x = Reshape(x_.Read(), D1D, D1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
const auto b = b_.Read();
const auto D = d_.Read();
const auto x = x_.Read();
auto Y = y_.ReadWrite();
MFEM_FORALL_2D(e, NE, Q1D, Q1D, NBZ,
{
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
MFEM_SHARED double BBt[MQ1*MD1];
double (*B)[MD1] = (double (*)[MD1]) BBt;
double (*Bt)[MQ1] = (double (*)[MQ1]) BBt;
MFEM_SHARED double sm0[NBZ][MDQ*MDQ];
MFEM_SHARED double sm1[NBZ][MDQ*MDQ];
double (*X)[MD1] = (double (*)[MD1]) (sm0 + tidz);
double (*DQ)[MQ1] = (double (*)[MQ1]) (sm1 + tidz);
double (*QQ)[MQ1] = (double (*)[MQ1]) (sm0 + tidz);
double (*QD)[MD1] = (double (*)[MD1]) (sm1 + tidz);
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
X[dy][dx] = x(dx,dy,e);
}
}
if (tidz == 0)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][dy] = b(q,dy);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double dq = 0.0;
for (int dx = 0; dx < D1D; ++dx)
{
dq += X[dy][dx] * B[qx][dx];
}
DQ[dy][qx] = dq;
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double qq = 0.0;
for (int dy = 0; dy < D1D; ++dy)
{
qq += DQ[dy][qx] * B[qy][dy];
}
QQ[qy][qx] = qq * D(qx, qy, e);
}
}
MFEM_SYNC_THREAD;
if (tidz == 0)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
Bt[dy][q] = b(q,dy);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double dq = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
dq += QQ[qy][qx] * Bt[dx][qx];
}
QD[qy][dx] = dq;
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double dd = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
dd += (QD[qy][dx] * Bt[dy][qy]);
}
Y(dx, dy, e) += dd;
}
}
internal::SmemPAMassApply2D_Element<T_D1D,T_Q1D,T_NBZ>(e, NE, b, D, x, Y, d1d, q1d);
});
}
@@ -805,134 +612,18 @@ static void PAMassApply3D(const int NE,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
MFEM_VERIFY(D1D <= MAX_D1D, "");
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
auto B = Reshape(b_.Read(), Q1D, D1D);
auto Bt = Reshape(bt_.Read(), D1D, Q1D);
auto D = Reshape(d_.Read(), Q1D, Q1D, Q1D, NE);
auto X = Reshape(x_.Read(), D1D, D1D, D1D, NE);
auto Y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_VERIFY(T_D1D ? T_D1D : d1d <= MAX_D1D, "");
MFEM_VERIFY(T_Q1D ? T_Q1D : q1d <= MAX_Q1D, "");
const auto B = b_.Read();
const auto Bt = bt_.Read();
const auto D = d_.Read();
const auto X = x_.Read();
auto Y = y_.ReadWrite();
MFEM_FORALL(e, NE,
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
double sol_xyz[max_Q1D][max_Q1D][max_Q1D];
for (int qz = 0; qz < Q1D; ++qz)
{
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xyz[qz][qy][qx] = 0.0;
}
}
}
for (int dz = 0; dz < D1D; ++dz)
{
double sol_xy[max_Q1D][max_Q1D];
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xy[qy][qx] = 0.0;
}
}
for (int dy = 0; dy < D1D; ++dy)
{
double sol_x[max_Q1D];
for (int qx = 0; qx < Q1D; ++qx)
{
sol_x[qx] = 0;
}
for (int dx = 0; dx < D1D; ++dx)
{
const double s = X(dx,dy,dz,e);
for (int qx = 0; qx < Q1D; ++qx)
{
sol_x[qx] += B(qx,dx) * s;
}
}
for (int qy = 0; qy < Q1D; ++qy)
{
const double wy = B(qy,dy);
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xy[qy][qx] += wy * sol_x[qx];
}
}
}
for (int qz = 0; qz < Q1D; ++qz)
{
const double wz = B(qz,dz);
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xyz[qz][qy][qx] += wz * sol_xy[qy][qx];
}
}
}
}
for (int qz = 0; qz < Q1D; ++qz)
{
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xyz[qz][qy][qx] *= D(qx,qy,qz,e);
}
}
}
for (int qz = 0; qz < Q1D; ++qz)
{
double sol_xy[max_D1D][max_D1D];
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
sol_xy[dy][dx] = 0;
}
}
for (int qy = 0; qy < Q1D; ++qy)
{
double sol_x[max_D1D];
for (int dx = 0; dx < D1D; ++dx)
{
sol_x[dx] = 0;
}
for (int qx = 0; qx < Q1D; ++qx)
{
const double s = sol_xyz[qz][qy][qx];
for (int dx = 0; dx < D1D; ++dx)
{
sol_x[dx] += Bt(dx,qx) * s;
}
}
for (int dy = 0; dy < D1D; ++dy)
{
const double wy = Bt(dy,qy);
for (int dx = 0; dx < D1D; ++dx)
{
sol_xy[dy][dx] += wy * sol_x[dx];
}
}
}
for (int dz = 0; dz < D1D; ++dz)
{
const double wz = Bt(dz,qz);
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
Y(dx,dy,dz,e) += wz * sol_xy[dy][dx];
}
}
}
}
internal::PAMassApply3D_Element(e, NE, B, Bt, D, X, Y, d1d, q1d);
});
}
@@ -953,213 +644,13 @@ static void SmemPAMassApply3D(const int NE,
constexpr int M1D = T_D1D ? T_D1D : MAX_D1D;
MFEM_VERIFY(D1D <= M1D, "");
MFEM_VERIFY(Q1D <= M1Q, "");
auto b = Reshape(b_.Read(), Q1D, D1D);
auto d = Reshape(d_.Read(), Q1D, Q1D, Q1D, NE);
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
auto b = b_.Read();
auto d = d_.Read();
auto x = x_.Read();
auto y = y_.ReadWrite();
MFEM_FORALL_3D(e, NE, Q1D, Q1D, 1,
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
MFEM_SHARED double sDQ[MQ1*MD1];
double (*B)[MD1] = (double (*)[MD1]) sDQ;
double (*Bt)[MQ1] = (double (*)[MQ1]) sDQ;
MFEM_SHARED double sm0[MDQ*MDQ*MDQ];
MFEM_SHARED double sm1[MDQ*MDQ*MDQ];
double (*X)[MD1][MD1] = (double (*)[MD1][MD1]) sm0;
double (*DDQ)[MD1][MQ1] = (double (*)[MD1][MQ1]) sm1;
double (*DQQ)[MQ1][MQ1] = (double (*)[MQ1][MQ1]) sm0;
double (*QQQ)[MQ1][MQ1] = (double (*)[MQ1][MQ1]) sm1;
double (*QQD)[MQ1][MD1] = (double (*)[MQ1][MD1]) sm0;
double (*QDD)[MD1][MD1] = (double (*)[MD1][MD1]) sm1;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
X[dz][dy][dx] = x(dx,dy,dz,e);
}
}
MFEM_FOREACH_THREAD(dx,x,Q1D)
{
B[dx][dy] = b(dx,dy);
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++)
{
u[dz] = 0;
}
MFEM_UNROLL(MD1)
for (int dx = 0; dx < D1D; ++dx)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
u[dz] += X[dz][dy][dx] * B[qx][dx];
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
DDQ[dz][dy][qx] = u[dz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++)
{
u[dz] = 0;
}
MFEM_UNROLL(MD1)
for (int dy = 0; dy < D1D; ++dy)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++)
{
u[dz] += DDQ[dz][dy][qx] * B[qy][dy];
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++)
{
DQQ[dz][qy][qx] = u[dz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; qz++)
{
u[qz] = 0;
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; qz++)
{
u[qz] += DQQ[dz][qy][qx] * B[qz][dz];
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; qz++)
{
QQQ[qz][qy][qx] = u[qz] * d(qx,qy,qz,e);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
Bt[d][q] = b(q,d);
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] = 0;
}
MFEM_UNROLL(MQ1)
for (int qx = 0; qx < Q1D; ++qx)
{
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQQ[qz][qy][qx] * Bt[dx][qx];
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qz][qy][dx] = u[qz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] = 0;
}
MFEM_UNROLL(MQ1)
for (int qy = 0; qy < Q1D; ++qy)
{
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQD[qz][qy][dx] * Bt[dy][qy];
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
QDD[qz][dy][dx] = u[qz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
u[dz] = 0;
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
u[dz] += QDD[qz][dy][dx] * Bt[dz][qz];
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
y(dx,dy,dz,e) += u[dz];
}
}
}
internal::SmemPAMassApply3D_Element<T_D1D,T_Q1D>(e, NE, b, d, x, y, d1d, q1d);
});
}
+632
View File
@@ -0,0 +1,632 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_BILININTEG_MASS_PA_HPP
#define MFEM_BILININTEG_MASS_PA_HPP
#include "../config/config.hpp"
#include "../general/forall.hpp"
#include "../linalg/dtensor.hpp"
namespace mfem
{
namespace internal
{
template <bool ACCUMULATE = true>
MFEM_HOST_DEVICE inline
void PAMassApply2D_Element(const int e,
const int NE,
const double *b_,
const double *bt_,
const double *d_,
const double *x_,
double *y_,
const int d1d = 0,
const int q1d = 0)
{
const int D1D = d1d;
const int Q1D = q1d;
auto B = ConstDeviceMatrix(b_, Q1D, D1D);
auto Bt = ConstDeviceMatrix(bt_, D1D, Q1D);
auto D = ConstDeviceCube(d_, Q1D, Q1D, NE);
auto X = ConstDeviceCube(x_, D1D, D1D, NE);
auto Y = DeviceCube(y_, D1D, D1D, NE);
if (!ACCUMULATE)
{
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
Y(dx, dy, e) = 0.0;
}
}
}
constexpr int max_D1D = MAX_D1D;
constexpr int max_Q1D = MAX_Q1D;
double sol_xy[max_Q1D][max_Q1D];
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xy[qy][qx] = 0.0;
}
}
for (int dy = 0; dy < D1D; ++dy)
{
double sol_x[max_Q1D];
for (int qy = 0; qy < Q1D; ++qy)
{
sol_x[qy] = 0.0;
}
for (int dx = 0; dx < D1D; ++dx)
{
const double s = X(dx,dy,e);
for (int qx = 0; qx < Q1D; ++qx)
{
sol_x[qx] += B(qx,dx)* s;
}
}
for (int qy = 0; qy < Q1D; ++qy)
{
const double d2q = B(qy,dy);
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xy[qy][qx] += d2q * sol_x[qx];
}
}
}
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xy[qy][qx] *= D(qx,qy,e);
}
}
for (int qy = 0; qy < Q1D; ++qy)
{
double sol_x[max_D1D];
for (int dx = 0; dx < D1D; ++dx)
{
sol_x[dx] = 0.0;
}
for (int qx = 0; qx < Q1D; ++qx)
{
const double s = sol_xy[qy][qx];
for (int dx = 0; dx < D1D; ++dx)
{
sol_x[dx] += Bt(dx,qx) * s;
}
}
for (int dy = 0; dy < D1D; ++dy)
{
const double q2d = Bt(dy,qy);
for (int dx = 0; dx < D1D; ++dx)
{
Y(dx,dy,e) += q2d * sol_x[dx];
}
}
}
}
template<int T_D1D, int T_Q1D, int T_NBZ, bool ACCUMULATE = true>
MFEM_HOST_DEVICE inline
void SmemPAMassApply2D_Element(const int e,
const int NE,
const double *b_,
const double *d_,
const double *x_,
double *y_,
int d1d = 0,
int q1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
auto b = ConstDeviceMatrix(b_, Q1D, D1D);
auto D = ConstDeviceCube(d_, Q1D, Q1D, NE);
auto x = ConstDeviceCube(x_, D1D, D1D, NE);
auto Y = DeviceCube(y_, D1D, D1D, NE);
const int tidz = MFEM_THREAD_ID(z);
MFEM_SHARED double BBt[MQ1*MD1];
double (*B)[MD1] = (double (*)[MD1]) BBt;
double (*Bt)[MQ1] = (double (*)[MQ1]) BBt;
MFEM_SHARED double sm0[NBZ][MDQ*MDQ];
MFEM_SHARED double sm1[NBZ][MDQ*MDQ];
double (*X)[MD1] = (double (*)[MD1]) (sm0 + tidz);
double (*DQ)[MQ1] = (double (*)[MQ1]) (sm1 + tidz);
double (*QQ)[MQ1] = (double (*)[MQ1]) (sm0 + tidz);
double (*QD)[MD1] = (double (*)[MD1]) (sm1 + tidz);
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
X[dy][dx] = x(dx,dy,e);
}
}
if (tidz == 0)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
B[q][dy] = b(q,dy);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double dq = 0.0;
for (int dx = 0; dx < D1D; ++dx)
{
dq += X[dy][dx] * B[qx][dx];
}
DQ[dy][qx] = dq;
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double qq = 0.0;
for (int dy = 0; dy < D1D; ++dy)
{
qq += DQ[dy][qx] * B[qy][dy];
}
QQ[qy][qx] = qq * D(qx, qy, e);
}
}
MFEM_SYNC_THREAD;
if (tidz == 0)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
Bt[dy][q] = b(q,dy);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double dq = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
dq += QQ[qy][qx] * Bt[dx][qx];
}
QD[qy][dx] = dq;
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double dd = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
dd += (QD[qy][dx] * Bt[dy][qy]);
}
if (ACCUMULATE)
{
Y(dx, dy, e) += dd;
}
else
{
Y(dx, dy, e) = dd;
}
}
}
}
template <bool ACCUMULATE = true>
MFEM_HOST_DEVICE inline
void PAMassApply3D_Element(const int e,
const int NE,
const double *b_,
const double *bt_,
const double *d_,
const double *x_,
double *y_,
const int d1d,
const int q1d)
{
const int D1D = d1d;
const int Q1D = q1d;
auto B = ConstDeviceMatrix(b_, Q1D, D1D);
auto Bt = ConstDeviceMatrix(bt_, D1D, Q1D);
auto D = DeviceTensor<4,const double>(d_, Q1D, Q1D, Q1D, NE);
auto X = DeviceTensor<4,const double>(x_, D1D, D1D, D1D, NE);
auto Y = DeviceTensor<4,double>(y_, D1D, D1D, D1D, NE);
if (!ACCUMULATE)
{
for (int dz = 0; dz < D1D; ++dz)
{
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
Y(dx, dy, dz, e) = 0.0;
}
}
}
}
constexpr int max_D1D = MAX_D1D;
constexpr int max_Q1D = MAX_Q1D;
double sol_xyz[max_Q1D][max_Q1D][max_Q1D];
for (int qz = 0; qz < Q1D; ++qz)
{
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xyz[qz][qy][qx] = 0.0;
}
}
}
for (int dz = 0; dz < D1D; ++dz)
{
double sol_xy[max_Q1D][max_Q1D];
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xy[qy][qx] = 0.0;
}
}
for (int dy = 0; dy < D1D; ++dy)
{
double sol_x[max_Q1D];
for (int qx = 0; qx < Q1D; ++qx)
{
sol_x[qx] = 0;
}
for (int dx = 0; dx < D1D; ++dx)
{
const double s = X(dx,dy,dz,e);
for (int qx = 0; qx < Q1D; ++qx)
{
sol_x[qx] += B(qx,dx) * s;
}
}
for (int qy = 0; qy < Q1D; ++qy)
{
const double wy = B(qy,dy);
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xy[qy][qx] += wy * sol_x[qx];
}
}
}
for (int qz = 0; qz < Q1D; ++qz)
{
const double wz = B(qz,dz);
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xyz[qz][qy][qx] += wz * sol_xy[qy][qx];
}
}
}
}
for (int qz = 0; qz < Q1D; ++qz)
{
for (int qy = 0; qy < Q1D; ++qy)
{
for (int qx = 0; qx < Q1D; ++qx)
{
sol_xyz[qz][qy][qx] *= D(qx,qy,qz,e);
}
}
}
for (int qz = 0; qz < Q1D; ++qz)
{
double sol_xy[max_D1D][max_D1D];
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
sol_xy[dy][dx] = 0;
}
}
for (int qy = 0; qy < Q1D; ++qy)
{
double sol_x[max_D1D];
for (int dx = 0; dx < D1D; ++dx)
{
sol_x[dx] = 0;
}
for (int qx = 0; qx < Q1D; ++qx)
{
const double s = sol_xyz[qz][qy][qx];
for (int dx = 0; dx < D1D; ++dx)
{
sol_x[dx] += Bt(dx,qx) * s;
}
}
for (int dy = 0; dy < D1D; ++dy)
{
const double wy = Bt(dy,qy);
for (int dx = 0; dx < D1D; ++dx)
{
sol_xy[dy][dx] += wy * sol_x[dx];
}
}
}
for (int dz = 0; dz < D1D; ++dz)
{
const double wz = Bt(dz,qz);
for (int dy = 0; dy < D1D; ++dy)
{
for (int dx = 0; dx < D1D; ++dx)
{
Y(dx,dy,dz,e) += wz * sol_xy[dy][dx];
}
}
}
}
}
template<int T_D1D, int T_Q1D, bool ACCUMULATE = true>
MFEM_HOST_DEVICE inline
void SmemPAMassApply3D_Element(const int e,
const int NE,
const double *b_,
const double *d_,
const double *x_,
double *y_,
const int d1d = 0,
const int q1d = 0)
{
constexpr int D1D = T_D1D ? T_D1D : d1d;
constexpr int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
auto b = ConstDeviceMatrix(b_, Q1D, D1D);
auto d = DeviceTensor<4,const double>(d_, Q1D, Q1D, Q1D, NE);
auto x = DeviceTensor<4,const double>(x_, D1D, D1D, D1D, NE);
auto y = DeviceTensor<4,double>(y_, D1D, D1D, D1D, NE);
MFEM_SHARED double sDQ[MQ1*MD1];
double (*B)[MD1] = (double (*)[MD1]) sDQ;
double (*Bt)[MQ1] = (double (*)[MQ1]) sDQ;
MFEM_SHARED double sm0[MDQ*MDQ*MDQ];
MFEM_SHARED double sm1[MDQ*MDQ*MDQ];
double (*X)[MD1][MD1] = (double (*)[MD1][MD1]) sm0;
double (*DDQ)[MD1][MQ1] = (double (*)[MD1][MQ1]) sm1;
double (*DQQ)[MQ1][MQ1] = (double (*)[MQ1][MQ1]) sm0;
double (*QQQ)[MQ1][MQ1] = (double (*)[MQ1][MQ1]) sm1;
double (*QQD)[MQ1][MD1] = (double (*)[MQ1][MD1]) sm0;
double (*QDD)[MD1][MD1] = (double (*)[MD1][MD1]) sm1;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
X[dz][dy][dx] = x(dx,dy,dz,e);
}
}
MFEM_FOREACH_THREAD(dx,x,Q1D)
{
B[dx][dy] = b(dx,dy);
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++)
{
u[dz] = 0;
}
MFEM_UNROLL(MD1)
for (int dx = 0; dx < D1D; ++dx)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
u[dz] += X[dz][dy][dx] * B[qx][dx];
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
DDQ[dz][dy][qx] = u[dz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++)
{
u[dz] = 0;
}
MFEM_UNROLL(MD1)
for (int dy = 0; dy < D1D; ++dy)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++)
{
u[dz] += DDQ[dz][dy][qx] * B[qy][dy];
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; dz++)
{
DQQ[dz][qy][qx] = u[dz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; qz++)
{
u[qz] = 0;
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; qz++)
{
u[qz] += DQQ[dz][qy][qx] * B[qz][dz];
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; qz++)
{
QQQ[qz][qy][qx] = u[qz] * d(qx,qy,qz,e);
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(di,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
Bt[di][q] = b(q,di);
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] = 0;
}
MFEM_UNROLL(MQ1)
for (int qx = 0; qx < Q1D; ++qx)
{
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQQ[qz][qy][qx] * Bt[dx][qx];
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
QQD[qz][qy][dx] = u[qz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] = 0;
}
MFEM_UNROLL(MQ1)
for (int qy = 0; qy < Q1D; ++qy)
{
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQD[qz][qy][dx] * Bt[dy][qy];
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
QDD[qz][dy][dx] = u[qz];
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
double u[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
u[dz] = 0;
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
u[dz] += QDD[qz][dy][dx] * Bt[dz][qz];
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < D1D; ++dz)
{
if (ACCUMULATE)
{
y(dx,dy,dz,e) += u[dz];
}
else
{
y(dx,dy,dz,e) = u[dz];
}
}
}
}
MFEM_SYNC_THREAD;
}
} // namespace internal
} // namespace mfem
#endif
+3 -36
View File
@@ -12,6 +12,7 @@
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
#include "qfunction.hpp"
#include "ceed/integrators/diffusion/diffusion.hpp"
using namespace std;
@@ -175,43 +176,9 @@ void VectorDiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
MFEM_VERIFY(!VQ && !MQ,
"Only scalar coefficient supported for partial assembly for VectorDiffusionIntegrator");
Vector coeff;
if (Q == nullptr)
{
coeff.SetSize(1);
coeff(0) = 1.0;
}
else if (ConstantCoefficient* cQ = dynamic_cast<ConstantCoefficient*>(Q))
{
coeff.SetSize(1);
coeff(0) = cQ->constant;
}
else if (QuadratureFunctionCoefficient* qfQ =
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
{
const QuadratureFunction &qFun = qfQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == ne*nq,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
coeff.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
{
coeff.SetSize(nq * ne);
auto Co = Reshape(coeff.HostWrite(), nq, ne);
for (int e = 0; e < ne; ++e)
{
ElementTransformation& T = *fes.GetElementTransformation(e);
for (int q = 0; q < nq; ++q)
{
Co(q,e) = Q->Eval(T, ir->IntPoint(q));
}
}
}
QuadratureSpace qs(*mesh, *ir);
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
const Array<double> &w = ir->GetWeights();
const Vector &j = geom->J;
+23 -110
View File
@@ -11,6 +11,7 @@
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "qspace.hpp"
#include "gridfunc.hpp"
namespace mfem
@@ -793,140 +794,63 @@ void VectorFEMassIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
trial_fetype = trial_el->GetDerivType();
test_fetype = test_el->GetDerivType();
auto SMQ = dynamic_cast<SymmetricMatrixCoefficient *>(MQ);
const int MQsymmDim = SMQ ? (SMQ->GetSize() * (SMQ->GetSize() + 1)) / 2 : 0;
const int MQfullDim = MQ ? (MQ->GetHeight() * MQ->GetWidth()) : 0;
const int MQdim = SMQ ? MQsymmDim : MQfullDim;
const int coeffDim = MQ ? MQdim : (DQ ? DQ->GetVDim() : 1);
symmetric = (SMQ || MQ == NULL);
const bool trial_curl = (trial_fetype == mfem::FiniteElement::CURL);
const bool trial_div = (trial_fetype == mfem::FiniteElement::DIV);
const bool test_curl = (test_fetype == mfem::FiniteElement::CURL);
const bool test_div = (test_fetype == mfem::FiniteElement::DIV);
QuadratureSpace qs(*mesh, *ir);
CoefficientVector coeff(qs, CoefficientStorage::SYMMETRIC);
if (Q) { coeff.Project(*Q); }
else if (MQ) { coeff.ProjectTranspose(*MQ); }
else if (DQ) { coeff.Project(*DQ); }
else { coeff.SetConstant(1.0); }
const int coeff_dim = coeff.GetVDim();
symmetric = (coeff_dim != dim*dim);
if ((trial_curl && test_div) || (trial_div && test_curl))
pa_data.SetSize((coeffDim == 1 ? 1 : dim*dim) * nq * ne,
pa_data.SetSize((coeff_dim == 1 ? 1 : dim*dim) * nq * ne,
Device::GetMemoryType());
else
pa_data.SetSize((symmetric ? symmDims : MQfullDim) * nq * ne,
pa_data.SetSize((symmetric ? symmDims : dims*dims) * nq * ne,
Device::GetMemoryType());
Vector coeff;
auto *qf_c = dynamic_cast<QuadratureFunctionCoefficient*>(Q);
if (qf_c)
{
const QuadratureFunction &qf = qf_c->GetQuadFunction();
qf.Read();
coeff.MakeRef(const_cast<QuadratureFunction&>(qf), 0);
}
else
{
coeff.SetSize(coeffDim * ne * nq);
coeff = 1.0;
auto coeffh = Reshape(coeff.HostWrite(), coeffDim, nq, ne);
if (Q || DQ || MQ)
{
Vector DM(DQ ? coeffDim : 0);
DenseMatrix M;
DenseSymmetricMatrix SM;
if (DQ)
{
MFEM_VERIFY(coeffDim == dim, "");
}
if (SMQ)
{
MFEM_VERIFY(SMQ->GetSize() == dim, "");
SM.SetSize(dim);
}
else if (MQ)
{
MFEM_VERIFY(coeffDim == MQdim, "");
MFEM_VERIFY(MQ->GetHeight() == dim && MQ->GetWidth() == dim, "");
M.SetSize(dim);
}
for (int e=0; e<ne; ++e)
{
ElementTransformation *tr = mesh->GetElementTransformation(e);
for (int p=0; p<nq; ++p)
{
if (SMQ)
{
SMQ->Eval(SM, *tr, ir->IntPoint(p));
int cnt = 0;
for (int i=0; i<dim; ++i)
for (int j=i; j<dim; ++j, ++cnt)
{
coeffh(cnt, p, e) = SM(i,j);
}
}
else if (MQ)
{
MQ->Eval(M, *tr, ir->IntPoint(p));
for (int i=0; i<dim; ++i)
for (int j=0; j<dim; ++j)
{
coeffh(j+(i*dim), p, e) = M(i,j);
}
}
else if (DQ)
{
DQ->Eval(DM, *tr, ir->IntPoint(p));
for (int i=0; i<coeffDim; ++i)
{
coeffh(i, p, e) = DM[i];
}
}
else
{
coeffh(0, p, e) = Q->Eval(*tr, ir->IntPoint(p));
}
}
}
}
}
if (trial_curl && test_curl && dim == 3)
{
PADiffusionSetup3D(quad1D, coeffDim, ne, ir->GetWeights(), geom->J,
PADiffusionSetup3D(quad1D, coeff_dim, ne, ir->GetWeights(), geom->J,
coeff, pa_data);
}
else if (trial_curl && test_curl && dim == 2)
{
PADiffusionSetup2D<2>(quad1D, coeffDim, ne, ir->GetWeights(), geom->J,
PADiffusionSetup2D<2>(quad1D, coeff_dim, ne, ir->GetWeights(), geom->J,
coeff, pa_data);
}
else if (trial_div && test_div && dim == 3)
{
PAHdivSetup3D(quad1D, coeffDim, ne, ir->GetWeights(), geom->J,
PAHdivSetup3D(quad1D, coeff_dim, ne, ir->GetWeights(), geom->J,
coeff, pa_data);
}
else if (trial_div && test_div && dim == 2)
{
PAHdivSetup2D(quad1D, coeffDim, ne, ir->GetWeights(), geom->J,
PAHdivSetup2D(quad1D, coeff_dim, ne, ir->GetWeights(), geom->J,
coeff, pa_data);
}
else if (((trial_curl && test_div) || (trial_div && test_curl)) &&
test_fel->GetOrder() == trial_fel->GetOrder())
{
if (coeffDim == 1)
if (coeff_dim == 1)
{
PAHcurlL2Setup(nq, coeffDim, ne, ir->GetWeights(), coeff, pa_data);
PAHcurlL2Setup(nq, coeff_dim, ne, ir->GetWeights(), coeff, pa_data);
}
else
{
const bool tr = (trial_div && test_curl);
if (dim == 3)
PAHcurlHdivSetup3D(quad1D, coeffDim, ne, tr, ir->GetWeights(),
PAHcurlHdivSetup3D(quad1D, coeff_dim, ne, tr, ir->GetWeights(),
geom->J, coeff, pa_data);
else
PAHcurlHdivSetup2D(quad1D, coeffDim, ne, tr, ir->GetWeights(),
PAHcurlHdivSetup2D(quad1D, coeff_dim, ne, tr, ir->GetWeights(),
geom->J, coeff, pa_data);
}
}
@@ -1168,19 +1092,8 @@ void MixedVectorGradientIntegrator::AssemblePA(const FiniteElementSpace
pa_data.SetSize(symmDims * nq * ne, Device::GetMemoryType());
Vector coeff(ne * nq);
coeff = 1.0;
if (Q)
{
for (int e=0; e<ne; ++e)
{
ElementTransformation *tr = mesh->GetElementTransformation(e);
for (int p=0; p<nq; ++p)
{
coeff[p + (e * nq)] = Q->Eval(*tr, ir->IntPoint(p));
}
}
}
QuadratureSpace qs(*mesh, *ir);
CoefficientVector coeff(Q, qs, CoefficientStorage::FULL);
// Use the same setup functions as VectorFEMassIntegrator.
if (test_el->GetDerivType() == mfem::FiniteElement::CURL && dim == 3)
+1 -1
View File
@@ -112,7 +112,7 @@ static void InitBasisImpl(const FiniteElementSpace &fes,
const bool tensor = dynamic_cast<const mfem::TensorBasisElement *>
(&fe) != nullptr;
// Init or retreive key values
// Init or retrieve key values
if (basis_itr == mfem::internal::ceed_basis_map.end())
{
if ( tensor )
+5 -4
View File
@@ -20,6 +20,7 @@
#include "../../../linalg/dtensor.hpp"
#include "../../../mesh/mesh.hpp"
#include "../../gridfunc.hpp"
#include "../../qfunction.hpp"
#include "util.hpp"
#include "ceed.hpp"
@@ -121,7 +122,7 @@ void InitCoefficient(mfem::Coefficient *Q, mfem::Mesh &mesh,
MFEM_VERIFY(qFun.Size() == nq * ne,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetElementIntRule(0),
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
@@ -195,7 +196,7 @@ void InitCoefficient(mfem::VectorCoefficient *VQ, mfem::Mesh &mesh,
MFEM_VERIFY(qFun.Size() == dim * nq * ne,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetElementIntRule(0),
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
@@ -279,7 +280,7 @@ void InitCoefficientWithIndices(mfem::Coefficient *Q, mfem::Mesh &mesh,
MFEM_VERIFY(qFun.Size() == nq * ne,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetElementIntRule(0),
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
ceedCoeff->coeff.SetSize(nq * nelem);
@@ -369,7 +370,7 @@ void InitCoefficientWithIndices(mfem::VectorCoefficient *VQ, mfem::Mesh &mesh,
MFEM_VERIFY(qFun.Size() == dim * nq * ne,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetElementIntRule(0),
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
ceedCoeff->coeff.SetSize(dim * nq * nelem);
+3 -3
View File
@@ -232,7 +232,7 @@ void InitRestriction(const FiniteElementSpace &fes,
RestrKey restr_key(&fes, nelem, P, ncomp, restr_type::Standard);
auto restr_itr = mfem::internal::ceed_restr_map.find(restr_key);
// Init or retreive key values
// Init or retrieve key values
if (restr_itr == mfem::internal::ceed_restr_map.end())
{
InitRestrictionImpl(fes, ceed, restr);
@@ -257,7 +257,7 @@ void InitRestrictionWithIndices(const FiniteElementSpace &fes,
RestrKey restr_key(&fes, nelem, P, ncomp, restr_type::Standard);
auto restr_itr = mfem::internal::ceed_restr_map.find(restr_key);
// Init or retreive key values
// Init or retrieve key values
if (restr_itr == mfem::internal::ceed_restr_map.end())
{
InitRestrictionWithIndicesImpl(fes, nelem, indices, ceed, restr);
@@ -281,7 +281,7 @@ void InitCoeffRestrictionWithIndices(const FiniteElementSpace &fes,
RestrKey restr_key(&fes, nelem, nquads, ncomp, restr_type::Coeff);
auto restr_itr = mfem::internal::ceed_restr_map.find(restr_key);
// Init or retreive key values
// Init or retrieve key values
if (restr_itr == mfem::internal::ceed_restr_map.end())
{
InitCoeffRestrictionWithIndicesImpl(fes, nelem, indices, nquads, ncomp,
+9 -10
View File
@@ -676,7 +676,6 @@ AlgebraicSpaceHierarchy::AlgebraicSpaceHierarchy(FiniteElementSpace &fes)
const SparseMatrix *R = fespaces[ilevel+1]->GetRestrictionMatrix();
if (R)
{
R->EnsureMultTranspose();
R_tr[ilevel] = new TransposeOperator(*R);
}
else
@@ -745,7 +744,7 @@ ParAlgebraicCoarseSpace::ParAlgebraicCoarseSpace(
ldof_group.SetSize(lsize);
ldof_group = 0;
GroupTopology &group_topo = gc_fine->GetGroupTopology();
const GroupTopology &group_topo = gc_fine->GetGroupTopology();
gc = new GroupCommunicator(group_topo);
Table &group_ldof = gc->GroupLDofTable();
group_ldof.MakeI(group_ldof_fine.Size());
@@ -822,11 +821,11 @@ HypreParMatrix *ParAlgebraicCoarseSpace::GetProlongationHypreParMatrix()
ParMesh *pmesh = dynamic_cast<ParMesh*>(mesh);
MFEM_VERIFY(pmesh != NULL, "");
Array<HYPRE_Int> dof_offsets, tdof_offsets, tdof_nb_offsets;
Array<HYPRE_Int> *offsets[2] = {&dof_offsets, &tdof_offsets};
Array<HYPRE_BigInt> dof_offsets, tdof_offsets, tdof_nb_offsets;
Array<HYPRE_BigInt> *offsets[2] = {&dof_offsets, &tdof_offsets};
int lsize = P->Height();
int ltsize = P->Width();
HYPRE_Int loc_sizes[2] = {lsize, ltsize};
HYPRE_BigInt loc_sizes[2] = {lsize, ltsize};
pmesh->GenerateOffsets(2, loc_sizes, offsets);
MPI_Comm comm = pmesh->GetComm();
@@ -870,12 +869,12 @@ HypreParMatrix *ParAlgebraicCoarseSpace::GetProlongationHypreParMatrix()
HYPRE_Int *j_offd = Memory<HYPRE_Int>(lsize-ltsize);
int offd_counter;
HYPRE_Int *cmap = Memory<HYPRE_Int>(lsize-ltsize);
HYPRE_BigInt *cmap = Memory<HYPRE_BigInt>(lsize-ltsize);
HYPRE_Int *col_starts = tdof_offsets;
HYPRE_Int *row_starts = dof_offsets;
HYPRE_BigInt *col_starts = tdof_offsets;
HYPRE_BigInt *row_starts = dof_offsets;
Array<Pair<HYPRE_Int, int> > cmap_j_offd(lsize-ltsize);
Array<Pair<HYPRE_BigInt, int> > cmap_j_offd(lsize-ltsize);
i_diag[0] = i_offd[0] = 0;
diag_counter = offd_counter = 0;
@@ -909,7 +908,7 @@ HypreParMatrix *ParAlgebraicCoarseSpace::GetProlongationHypreParMatrix()
i_offd[i_ldof+1] = offd_counter;
}
SortPairs<HYPRE_Int, int>(cmap_j_offd, offd_counter);
SortPairs<HYPRE_BigInt, int>(cmap_j_offd, offd_counter);
for (int i = 0; i < offd_counter; i++)
{
+316 -3
View File
@@ -48,6 +48,31 @@ ElementTransformation *RefinedToCoarse(
return coarse_T;
}
void Coefficient::Project(QuadratureFunction &qf)
{
QuadratureSpaceBase &qspace = *qf.GetSpace();
const int ne = qspace.GetNE();
Vector values;
for (int iel = 0; iel < ne; ++iel)
{
qf.GetValues(iel, values);
const IntegrationRule &ir = qspace.GetIntRule(iel);
ElementTransformation& T = *qspace.GetTransformation(iel);
for (int iq = 0; iq < ir.Size(); ++iq)
{
const IntegrationPoint &ip = ir[iq];
T.SetIntPoint(&ip);
const int iq_p = qspace.GetPermutedIndex(iel, iq);
values[iq_p] = Eval(T, ip);
}
}
}
void ConstantCoefficient::Project(QuadratureFunction &qf)
{
qf = constant;
}
double PWConstCoefficient::Eval(ElementTransformation & T,
const IntegrationPoint & ip)
{
@@ -135,6 +160,11 @@ double GridFunctionCoefficient::Eval (ElementTransformation &T,
}
}
void GridFunctionCoefficient::Project(QuadratureFunction &qf)
{
qf.ProjectGridFunction(*GridF);
}
void TransformedCoefficient::SetTime(double t)
{
if (Q1) { Q1->SetTime(t); }
@@ -203,6 +233,29 @@ void VectorCoefficient::Eval(DenseMatrix &M, ElementTransformation &T,
}
}
void VectorCoefficient::Project(QuadratureFunction &qf)
{
MFEM_VERIFY(vdim == qf.GetVDim(), "Wrong sizes.");
QuadratureSpaceBase &qspace = *qf.GetSpace();
const int ne = qspace.GetNE();
DenseMatrix values;
Vector col;
for (int iel = 0; iel < ne; ++iel)
{
qf.GetValues(iel, values);
const IntegrationRule &ir = qspace.GetIntRule(iel);
ElementTransformation& T = *qspace.GetTransformation(iel);
for (int iq = 0; iq < ir.Size(); ++iq)
{
const IntegrationPoint &ip = ir[iq];
T.SetIntPoint(&ip);
const int iq_p = qspace.GetPermutedIndex(iel, iq);
values.GetColumnReference(iq_p, col);
Eval(col, T, ip);
}
}
}
void PWVectorCoefficient::InitMap(const Array<int> & attr,
const Array<VectorCoefficient*> & coefs)
{
@@ -368,6 +421,11 @@ void VectorGridFunctionCoefficient::Eval(
}
}
void VectorGridFunctionCoefficient::Project(QuadratureFunction &qf)
{
qf.ProjectGridFunction(*GridFunc);
}
GradientGridFunctionCoefficient::GradientGridFunctionCoefficient (
const GridFunction *gf)
: VectorCoefficient((gf) ?
@@ -517,6 +575,29 @@ void VectorRestrictedCoefficient::Eval(
}
}
void MatrixCoefficient::Project(QuadratureFunction &qf, bool transpose)
{
MFEM_VERIFY(qf.GetVDim() == height*width, "Wrong sizes.");
QuadratureSpaceBase &qspace = *qf.GetSpace();
const int ne = qspace.GetNE();
DenseMatrix values, matrix;
for (int iel = 0; iel < ne; ++iel)
{
qf.GetValues(iel, values);
const IntegrationRule &ir = qspace.GetIntRule(iel);
ElementTransformation& T = *qspace.GetTransformation(iel);
for (int iq = 0; iq < ir.Size(); ++iq)
{
const IntegrationPoint &ip = ir[iq];
T.SetIntPoint(&ip);
const int iq_p = qspace.GetPermutedIndex(iel, iq);
matrix.UseExternalData(&values(0, iq_p), height, width);
Eval(matrix, T, ip);
if (transpose) { matrix.Transpose(); }
}
}
}
void PWMatrixCoefficient::InitMap(const Array<int> & attr,
const Array<MatrixCoefficient*> & coefs)
{
@@ -669,6 +750,31 @@ void MatrixFunctionCoefficient::EvalSymmetric(Vector &K,
}
}
void SymmetricMatrixCoefficient::ProjectSymmetric(QuadratureFunction &qf)
{
const int vdim = qf.GetVDim();
MFEM_VERIFY(vdim == height*(height+1)/2, "Wrong sizes.");
QuadratureSpaceBase &qspace = *qf.GetSpace();
const int ne = qspace.GetNE();
DenseMatrix values;
DenseSymmetricMatrix matrix;
for (int iel = 0; iel < ne; ++iel)
{
qf.GetValues(iel, values);
const IntegrationRule &ir = qspace.GetIntRule(iel);
ElementTransformation& T = *qspace.GetTransformation(iel);
for (int iq = 0; iq < ir.Size(); ++iq)
{
const IntegrationPoint &ip = ir[iq];
T.SetIntPoint(&ip);
matrix.UseExternalData(&values(0, iq), vdim);
Eval(matrix, T, ip);
}
}
}
void SymmetricMatrixCoefficient::Eval(DenseMatrix &K, ElementTransformation &T,
const IntegrationPoint &ip)
{
@@ -1437,12 +1543,12 @@ void VectorQuadratureFunctionCoefficient::Eval(Vector &V,
if (index == 0 && vdim == QuadF.GetVDim())
{
QuadF.GetElementValues(T.ElementNo, ip.index, V);
QuadF.GetValues(T.ElementNo, ip.index, V);
}
else
{
Vector temp;
QuadF.GetElementValues(T.ElementNo, ip.index, temp);
QuadF.GetValues(T.ElementNo, ip.index, temp);
V.SetSize(vdim);
for (int i = 0; i < vdim; i++)
{
@@ -1453,6 +1559,11 @@ void VectorQuadratureFunctionCoefficient::Eval(Vector &V,
return;
}
void VectorQuadratureFunctionCoefficient::Project(QuadratureFunction &qf)
{
qf = QuadF;
}
QuadratureFunctionCoefficient::QuadratureFunctionCoefficient(
QuadratureFunction &qf) : QuadF(qf)
{
@@ -1464,8 +1575,210 @@ double QuadratureFunctionCoefficient::Eval(ElementTransformation &T,
{
QuadF.HostRead();
Vector temp(1);
QuadF.GetElementValues(T.ElementNo, ip.index, temp);
QuadF.GetValues(T.ElementNo, ip.index, temp);
return temp[0];
}
void QuadratureFunctionCoefficient::Project(QuadratureFunction &qf)
{
qf = QuadF;
}
CoefficientVector::CoefficientVector(
QuadratureSpaceBase &qs_, CoefficientStorage storage_)
: Vector(), storage(storage_), vdim(0), qs(qs_), qf(NULL)
{
UseDevice(true);
}
CoefficientVector::CoefficientVector(Coefficient *coeff,
QuadratureSpaceBase &qs_,
CoefficientStorage storage_)
: CoefficientVector(qs_, storage_)
{
if (coeff == NULL)
{
SetConstant(1.0);
}
else
{
Project(*coeff);
}
}
CoefficientVector::CoefficientVector(Coefficient &coeff,
QuadratureSpaceBase &qs_,
CoefficientStorage storage_)
: CoefficientVector(qs_, storage_)
{
Project(coeff);
}
CoefficientVector::CoefficientVector(VectorCoefficient &coeff,
QuadratureSpaceBase &qs_,
CoefficientStorage storage_)
: CoefficientVector(qs_, storage_)
{
Project(coeff);
}
CoefficientVector::CoefficientVector(MatrixCoefficient &coeff,
QuadratureSpaceBase &qs_,
CoefficientStorage storage_)
: CoefficientVector(qs_, storage_)
{
Project(coeff);
}
void CoefficientVector::Project(Coefficient &coeff)
{
vdim = 1;
if (auto *const_coeff = dynamic_cast<ConstantCoefficient*>(&coeff))
{
SetConstant(const_coeff->constant);
}
else if (auto *qf_coeff = dynamic_cast<QuadratureFunctionCoefficient*>(&coeff))
{
MakeRef(qf_coeff->GetQuadFunction());
}
else
{
if (qf == nullptr) { qf = new QuadratureFunction(qs); }
qf->SetVDim(1);
coeff.Project(*qf);
Vector::MakeRef(*qf, 0, qf->Size());
}
}
void CoefficientVector::Project(VectorCoefficient &coeff)
{
vdim = coeff.GetVDim();
if (auto *const_coeff = dynamic_cast<VectorConstantCoefficient*>(&coeff))
{
SetConstant(const_coeff->GetVec());
}
else if (auto *qf_coeff =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(&coeff))
{
MakeRef(qf_coeff->GetQuadFunction());
}
else
{
if (qf == nullptr) { qf = new QuadratureFunction(qs, vdim); }
qf->SetVDim(vdim);
coeff.Project(*qf);
Vector::MakeRef(*qf, 0, qf->Size());
}
}
void CoefficientVector::Project(MatrixCoefficient &coeff, bool transpose)
{
if (auto *const_coeff = dynamic_cast<MatrixConstantCoefficient*>(&coeff))
{
SetConstant(const_coeff->GetMatrix());
}
else if (auto *const_sym_coeff =
dynamic_cast<SymmetricMatrixConstantCoefficient*>(&coeff))
{
SetConstant(const_sym_coeff->GetMatrix());
}
else
{
auto *sym_coeff = dynamic_cast<SymmetricMatrixCoefficient*>(&coeff);
const bool sym = sym_coeff && (storage & CoefficientStorage::SYMMETRIC);
const int height = coeff.GetHeight();
const int width = coeff.GetWidth();
vdim = sym ? height*(height + 1)/2 : width*height;
if (qf == nullptr) { qf = new QuadratureFunction(qs, vdim); }
qf->SetVDim(vdim);
if (sym) { sym_coeff->ProjectSymmetric(*qf); }
else { coeff.Project(*qf, transpose); }
Vector::MakeRef(*qf, 0, qf->Size());
}
}
void CoefficientVector::ProjectTranspose(MatrixCoefficient &coeff)
{
Project(coeff, true);
}
void CoefficientVector::MakeRef(const QuadratureFunction &qf_)
{
vdim = qf_.GetVDim();
const QuadratureSpaceBase *qs2 = qf_.GetSpace();
MFEM_CONTRACT_VAR(qs2); // qs2 used only for asserts
MFEM_VERIFY(qs2 != NULL, "Invalid QuadratureSpace.")
MFEM_VERIFY(qs2->GetMesh() == qs.GetMesh(), "Meshes differ.");
MFEM_VERIFY(qs2->GetOrder() == qs.GetOrder(), "Orders differ.");
Vector::MakeRef(const_cast<QuadratureFunction&>(qf_), 0, qf_.Size());
}
void CoefficientVector::SetConstant(double constant)
{
const int nq = (storage & CoefficientStorage::CONSTANTS) ? 1 : qs.GetSize();
vdim = 1;
SetSize(nq);
Vector::operator=(constant);
}
void CoefficientVector::SetConstant(const Vector &constant)
{
const int nq = (storage & CoefficientStorage::CONSTANTS) ? 1 : qs.GetSize();
vdim = constant.Size();
SetSize(nq*vdim);
for (int iq = 0; iq < nq; ++iq)
{
for (int vd = 0; vd<vdim; ++vd)
{
(*this)[vd + iq*vdim] = constant[vd];
}
}
}
void CoefficientVector::SetConstant(const DenseMatrix &constant)
{
const int nq = (storage & CoefficientStorage::CONSTANTS) ? 1 : qs.GetSize();
const int width = constant.Width();
const int height = constant.Height();
vdim = width*height;
SetSize(nq*vdim);
for (int iq = 0; iq < nq; ++iq)
{
for (int j = 0; j < width; ++j)
{
for (int i = 0; i < height; ++i)
{
(*this)[i + j*height + iq*vdim] = constant(i, j);
}
}
}
}
void CoefficientVector::SetConstant(const DenseSymmetricMatrix &constant)
{
const int nq = (storage & CoefficientStorage::CONSTANTS) ? 1 : qs.GetSize();
const int height = constant.Height();
const bool sym = storage & CoefficientStorage::SYMMETRIC;
vdim = sym ? height*(height + 1)/2 : height*height;
SetSize(nq*vdim);
for (int iq = 0; iq < nq; ++iq)
{
for (int vd = 0; vd < vdim; ++vd)
{
const double value = sym ? constant.GetData()[vd] : constant(vd % height,
vd / height);
(*this)[vd + iq*vdim] = value;
}
}
}
int CoefficientVector::GetVDim() const { return vdim; }
CoefficientVector::~CoefficientVector()
{
delete qf;
}
}
+171 -3
View File
@@ -23,6 +23,8 @@ namespace mfem
{
class Mesh;
class QuadratureSpaceBase;
class QuadratureFunction;
#ifdef MFEM_USE_MPI
class ParMesh;
@@ -70,6 +72,10 @@ public:
return Eval(T, ip);
}
/// @brief Fill the QuadratureFunction @a qf by evaluating the coefficient at
/// the quadrature points.
virtual void Project(QuadratureFunction &qf);
virtual ~Coefficient() { }
};
@@ -87,6 +93,9 @@ public:
virtual double Eval(ElementTransformation &T,
const IntegrationPoint &ip)
{ return (constant); }
/// Fill the QuadratureFunction @a qf with the constant value.
void Project(QuadratureFunction &qf);
};
/** @brief A piecewise constant coefficient with the constants keyed
@@ -274,6 +283,13 @@ public:
/// Evaluate the coefficient at @a ip.
virtual double Eval(ElementTransformation &T,
const IntegrationPoint &ip);
/// @brief Fill the QuadratureFunction @a qf by evaluating the coefficient at
/// the quadrature points.
///
/// This function uses the efficient QuadratureFunction::ProjectGridFunction
/// to fill the QuadratureFunction.
virtual void Project(QuadratureFunction &qf);
};
@@ -471,6 +487,13 @@ public:
virtual void Eval(DenseMatrix &M, ElementTransformation &T,
const IntegrationRule &ir);
/// @brief Fill the QuadratureFunction @a qf by evaluating the coefficient at
/// the quadrature points.
///
/// The @a vdim of the VectorCoefficient should be equal to the @a vdim of
/// the QuadratureFunction.
virtual void Project(QuadratureFunction &qf);
virtual ~VectorCoefficient() { }
};
@@ -491,7 +514,7 @@ public:
const IntegrationPoint &ip) { V = vec; }
/// Return a reference to the constant vector in this class.
const Vector& GetVec() { return vec; }
const Vector& GetVec() const { return vec; }
};
/** @brief A piecewise vector-valued coefficient with the pieces keyed off the
@@ -688,6 +711,13 @@ public:
virtual void Eval(DenseMatrix &M, ElementTransformation &T,
const IntegrationRule &ir);
/// @brief Fill the QuadratureFunction @a qf by evaluating the coefficient at
/// the quadrature points.
///
/// This function uses the efficient QuadratureFunction::ProjectGridFunction
/// to fill the QuadratureFunction.
virtual void Project(QuadratureFunction &qf);
virtual ~VectorGridFunctionCoefficient() { }
};
@@ -915,6 +945,14 @@ public:
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
const IntegrationPoint &ip) = 0;
/// @brief Fill the QuadratureFunction @a qf by evaluating the coefficient at
/// the quadrature points. The matrix will be transposed or not according to
/// the boolean argument @a transpose.
///
/// The @a vdim of the QuadratureFunction should be equal to the height times
/// the width of the matrix.
virtual void Project(QuadratureFunction &qf, bool transpose=false);
/// (DEPRECATED) Evaluate a symmetric matrix coefficient.
/** @brief Evaluate the upper triangular entries of the matrix coefficient
in the symmetric case, similarly to Eval. Matrix entry (i,j) is stored
@@ -943,6 +981,8 @@ public:
/// Evaluate the matrix coefficient at @a ip.
virtual void Eval(DenseMatrix &M, ElementTransformation &T,
const IntegrationPoint &ip) { M = mat; }
/// Return a reference to the constant matrix.
const DenseMatrix& GetMatrix() { return mat; }
};
@@ -1146,6 +1186,8 @@ public:
can be overridden with the @a own parameter. */
void Set(int i, int j, Coefficient * c, bool own=true);
using MatrixCoefficient::Eval;
/// Evaluate coefficient located at (i,j) in the matrix using integration
/// point @a ip.
double Eval(int i, int j, ElementTransformation &T, const IntegrationPoint &ip)
@@ -1260,6 +1302,15 @@ public:
/// Get the size of the matrix.
int GetSize() const { return height; }
/// @brief Fill the QuadratureFunction @a qf by evaluating the coefficient at
/// the quadrature points.
///
/// @note As opposed to MatrixCoefficient::Project, this function stores only
/// the @a symmetric part of the matrix at each quadrature point.
///
/// The @a vdim of the coefficient should be equal to height*(height+1)/2.
virtual void ProjectSymmetric(QuadratureFunction &qf);
/** @brief Evaluate the matrix coefficient in the element described by @a T
at the point @a ip, storing the result as a symmetric matrix @a K. */
/** @note When this method is called, the caller must make sure that the
@@ -1280,6 +1331,9 @@ public:
virtual void Eval(DenseMatrix &K, ElementTransformation &T,
const IntegrationPoint &ip);
/// Return a reference to the constant matrix.
const DenseSymmetricMatrix& GetMatrix() { return mat; }
virtual ~SymmetricMatrixCoefficient() { }
};
@@ -2049,8 +2103,6 @@ public:
};
///@}
class QuadratureFunction;
/** @brief Vector quadrature function coefficient which requires that the
quadrature rules used for this vector coefficient be the same as those that
live within the supplied QuadratureFunction. */
@@ -2075,6 +2127,8 @@ public:
virtual void Eval(Vector &V, ElementTransformation &T,
const IntegrationPoint &ip);
virtual void Project(QuadratureFunction &qf);
virtual ~VectorQuadratureFunctionCoefficient() { }
};
@@ -2094,9 +2148,123 @@ public:
virtual double Eval(ElementTransformation &T, const IntegrationPoint &ip);
virtual void Project(QuadratureFunction &qf);
virtual ~QuadratureFunctionCoefficient() { }
};
/// Flags that determine what storage optimizations to use in CoefficientVector
enum class CoefficientStorage : int
{
FULL = 0, ///< Store the coefficient as a full QuadratureFunction.
CONSTANTS = 1 << 0, ///< Store constants using only @a vdim entries.
SYMMETRIC = 1 << 1, ///< Store the triangular part of symmetric matrices.
COMPRESSED = CONSTANTS | SYMMETRIC ///< Enable all above compressions.
};
inline CoefficientStorage operator|(CoefficientStorage a, CoefficientStorage b)
{
return CoefficientStorage(int(a) | int(b));
}
inline int operator&(CoefficientStorage a, CoefficientStorage b)
{
return int(a) & int(b);
}
/// @brief Class to represent a coefficient evaluated at quadrature points.
///
/// In the general case, a CoefficientVector is the same as a QuadratureFunction
/// with a coefficient projected onto it.
///
/// This class allows for some "compression" of the coefficient data, according
/// to the storage flags given by CoefficientStorage. For example, constant
/// coefficients can be stored using only @a vdim values, and symmetric matrices
/// can be stored using e.g. the upper triangular part of the matrix.
class CoefficientVector : public Vector
{
protected:
CoefficientStorage storage; ///< Storage optimizations (see CoefficientStorage).
int vdim; ///< Number of values per quadrature point.
QuadratureSpaceBase &qs; ///< Associated QuadratureSpaceBase.
QuadratureFunction *qf; ///< Internal QuadratureFunction (owned, may be NULL).
public:
/// Create an empty CoefficientVector.
CoefficientVector(QuadratureSpaceBase &qs_,
CoefficientStorage storage_ = CoefficientStorage::FULL);
/// @brief Create a CoefficientVector from the given Coefficient and
/// QuadratureSpaceBase.
///
/// If @a coeff is NULL, it will be interpreted as a constant with value one.
/// @sa CoefficientStorage for a description of @a storage_.
CoefficientVector(Coefficient *coeff, QuadratureSpaceBase &qs,
CoefficientStorage storage_ = CoefficientStorage::FULL);
/// @brief Create a CoefficientVector from the given Coefficient and
/// QuadratureSpaceBase.
///
/// @sa CoefficientStorage for a description of @a storage_.
CoefficientVector(Coefficient &coeff, QuadratureSpaceBase &qs,
CoefficientStorage storage_ = CoefficientStorage::FULL);
/// @brief Create a CoefficientVector from the given VectorCoefficient and
/// QuadratureSpaceBase.
///
/// @sa CoefficientStorage for a description of @a storage_.
CoefficientVector(VectorCoefficient &coeff, QuadratureSpaceBase &qs,
CoefficientStorage storage_ = CoefficientStorage::FULL);
/// @brief Create a CoefficientVector from the given MatrixCoefficient and
/// QuadratureSpaceBase.
///
/// @sa CoefficientStorage for a description of @a storage_.
CoefficientVector(MatrixCoefficient &coeff, QuadratureSpaceBase &qs,
CoefficientStorage storage_ = CoefficientStorage::FULL);
/// @brief Evaluate the given Coefficient at the quadrature points defined by
/// @ref qs.
void Project(Coefficient &coeff);
/// @brief Evaluate the given VectorCoefficient at the quadrature points
/// defined by @ref qs.
///
/// @sa CoefficientVector for a description of the @a compress argument.
void Project(VectorCoefficient &coeff);
/// @brief Evaluate the given MatrixCoefficient at the quadrature points
/// defined by @ref qs.
///
/// @sa CoefficientVector for a description of the @a compress argument.
void Project(MatrixCoefficient &coeff, bool transpose=false);
/// @brief Project the transpose of @a coeff.
///
/// @sa Project(MatrixCoefficient&, QuadratureSpace&, bool, bool)
void ProjectTranspose(MatrixCoefficient &coeff);
/// Make this vector a reference to the given QuadratureFunction.
void MakeRef(const QuadratureFunction &qf_);
/// Set this vector to the given constant.
void SetConstant(double constant);
/// Set this vector to the given constant vector.
void SetConstant(const Vector &constant);
/// Set this vector to the given constant matrix.
void SetConstant(const DenseMatrix &constant);
/// Set this vector to the given constant symmetric matrix.
void SetConstant(const DenseSymmetricMatrix &constant);
/// Return the number of values per quadrature point.
int GetVDim() const;
~CoefficientVector();
};
/** @brief Compute the Lp norm of a function f.
\f$ \| f \|_{Lp} = ( \int_\Omega | f |^p d\Omega)^{1/p} \f$ */
double ComputeLpNorm(double p, Coefficient &coeff, Mesh &mesh,
+3 -3
View File
@@ -442,7 +442,7 @@ void VisItDataCollection::RegisterQField(const std::string& name,
{
int locLOD = GlobGeometryRefiner.GetRefinementLevelFromElems(
mesh->GetElementBaseGeometry(e),
qf->GetElementIntRule(e).GetNPoints());
qf->GetIntRule(e).GetNPoints());
LOD = std::max(LOD,locLOD);
}
@@ -1078,7 +1078,7 @@ void ParaViewDataCollection::SaveGFieldVTU(std::ostream &os, int ref_,
it->second->GetValues(i, RefG->RefPts, val, pmat);
for (int j = 0; j < val.Size(); j++)
{
WriteBinaryOrASCII(out, buf, val(j), "\n", pv_data_format);
WriteBinaryOrASCII(os, buf, val(j), "\n", pv_data_format);
}
}
}
@@ -1094,7 +1094,7 @@ void ParaViewDataCollection::SaveGFieldVTU(std::ostream &os, int ref_,
{
for (int ii = 0; ii < vval.Height(); ii++)
{
WriteBinaryOrASCII(out, buf, vval(ii,jj), " ", pv_data_format);
WriteBinaryOrASCII(os, buf, vval(ii,jj), " ", pv_data_format);
}
if (pv_data_format == VTKFormat::ASCII) { os << '\n'; }
}
+1
View File
@@ -14,6 +14,7 @@
#include "../config/config.hpp"
#include "gridfunc.hpp"
#include "qfunction.hpp"
#ifdef MFEM_USE_MPI
#include "pgridfunc.hpp"
#endif
+315
View File
@@ -0,0 +1,315 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "dgmassinv.hpp"
#include "bilinearform.hpp"
#include "dgmassinv_kernels.hpp"
#include "../general/forall.hpp"
namespace mfem
{
DGMassInverse::DGMassInverse(FiniteElementSpace &fes_orig, Coefficient *coeff,
const IntegrationRule *ir,
int btype)
: Solver(fes_orig.GetTrueVSize()),
fec(fes_orig.GetMaxElementOrder(),
fes_orig.GetMesh()->Dimension(),
btype,
fes_orig.GetFE(0)->GetMapType()),
fes(fes_orig.GetMesh(), &fec)
{
MFEM_VERIFY(fes.IsDGSpace(), "Space must be DG.");
MFEM_VERIFY(!fes.IsVariableOrder(), "Variable orders not supported.");
const int btype_orig =
static_cast<const L2_FECollection*>(fes_orig.FEColl())->GetBasisType();
if (btype_orig == btype)
{
// No change of basis required
d2q = nullptr;
}
else
{
// original basis to solver basis
const auto mode = DofToQuad::TENSOR;
d2q = &fes_orig.GetFE(0)->GetDofToQuad(fes.GetFE(0)->GetNodes(), mode);
int n = d2q->ndof;
Array<double> B_inv = d2q->B; // deep copy
Array<int> ipiv(n);
// solver basis to original
LUFactors lu(B_inv.HostReadWrite(), ipiv.HostWrite());
lu.Factor(n);
B_.SetSize(n*n);
lu.GetInverseMatrix(n, B_.HostWrite());
Bt_.SetSize(n*n);
DenseMatrix B_matrix(B_.HostReadWrite(), n, n);
DenseMatrix Bt_matrix(Bt_.HostWrite(), n, n);
Bt_matrix.Transpose(B_matrix);
}
if (coeff) { m = new MassIntegrator(*coeff, ir); }
else { m = new MassIntegrator(ir); }
diag_inv.SetSize(height);
// Workspace vectors used for CG
r_.SetSize(height);
d_.SetSize(height);
z_.SetSize(height);
// Only need transformed RHS if basis is different
if (btype_orig != btype) { b2_.SetSize(height); }
M = new BilinearForm(&fes);
M->AddDomainIntegrator(m); // M assumes ownership of m
M->SetAssemblyLevel(AssemblyLevel::PARTIAL);
// Assemble the bilinear form and its diagonal (for preconditioning).
Update();
}
DGMassInverse::DGMassInverse(FiniteElementSpace &fes_, Coefficient &coeff,
int btype)
: DGMassInverse(fes_, &coeff, nullptr, btype) { }
DGMassInverse::DGMassInverse(FiniteElementSpace &fes_, Coefficient &coeff,
const IntegrationRule &ir, int btype)
: DGMassInverse(fes_, &coeff, &ir, btype) { }
DGMassInverse::DGMassInverse(FiniteElementSpace &fes_,
const IntegrationRule &ir, int btype)
: DGMassInverse(fes_, nullptr, &ir, btype) { }
DGMassInverse::DGMassInverse(FiniteElementSpace &fes_, int btype)
: DGMassInverse(fes_, nullptr, nullptr, btype) { }
void DGMassInverse::SetOperator(const Operator &op)
{
MFEM_ABORT("SetOperator not supported with DGMassInverse.")
}
void DGMassInverse::SetRelTol(const double rel_tol_) { rel_tol = rel_tol_; }
void DGMassInverse::SetAbsTol(const double abs_tol_) { abs_tol = abs_tol_; }
void DGMassInverse::SetMaxIter(const double max_iter_) { max_iter = max_iter_; }
void DGMassInverse::Update()
{
M->Assemble();
M->AssembleDiagonal(diag_inv);
internal::MakeReciprocal(diag_inv.Size(), diag_inv.ReadWrite());
}
DGMassInverse::~DGMassInverse()
{
delete M;
}
template<int DIM, int D1D, int Q1D>
void DGMassInverse::DGMassCGIteration(const Vector &b_, Vector &u_) const
{
using namespace internal; // host/device kernel functions
const int NE = fes.GetNE();
const int d1d = m->dofs1D;
const int q1d = m->quad1D;
const int ND = static_cast<int>(pow(d1d, DIM));
const auto B = m->maps->B.Read();
const auto Bt = m->maps->Bt.Read();
const auto pa_data = m->pa_data.Read();
const auto dinv = diag_inv.Read();
auto r = r_.Write();
auto d = d_.Write();
auto z = z_.Write();
auto u = u_.ReadWrite();
const double RELTOL = rel_tol;
const double ABSTOL = abs_tol;
const double MAXIT = max_iter;
const bool IT_MODE = iterative_mode;
const bool CHANGE_BASIS = (d2q != nullptr);
// b is the right-hand side (if no change of basis, this just points to the
// incoming RHS vector, if we have to change basis, this points to the
// internal b2 vector where we put the transformed RHS)
const double *b;
// the following are non-null if we have to change basis
double *b2 = nullptr; // non-const access to b2
const double *b_orig = nullptr; // RHS vector in "original" basis
const double *d2q_B = nullptr; // matrix to transform initial guess
const double *q2d_B = nullptr; // matrix to transform solution
const double *q2d_Bt = nullptr; // matrix to transform RHS
if (CHANGE_BASIS)
{
d2q_B = d2q->B.Read();
q2d_B = B_.Read();
q2d_Bt = Bt_.Read();
b2 = b2_.Write();
b_orig = b_.Read();
b = b2;
}
else
{
b = b_.Read();
}
constexpr int NB = Q1D ? Q1D : 1; // block size
MFEM_FORALL_2D(e, NE, NB, NB, 1,
{
constexpr int NB = Q1D ? Q1D : 1; // redefine here for some compilers
// Perform change of basis if needed
if (CHANGE_BASIS)
{
// Transform RHS
DGMassBasis<DIM,D1D,MAX_D1D>(e, NE, q2d_Bt, b_orig, b2, d1d);
if (IT_MODE)
{
// Transform initial guess
DGMassBasis<DIM,D1D,MAX_D1D>(e, NE, d2q_B, u, u, d1d);
}
}
const int tid = MFEM_THREAD_ID(x) + NB*MFEM_THREAD_ID(y);
// Compute first residual
if (IT_MODE)
{
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, u, r, d1d, q1d);
DGMassAxpy(e, NE, ND, 1.0, b, -1.0, r, r); // r = b - r
}
else
{
// if not in iterative mode, use zero initial guess
const int BX = MFEM_THREAD_SIZE(x);
const int BY = MFEM_THREAD_SIZE(y);
const int bxy = BX*BY;
const auto B = ConstDeviceMatrix(b, ND, NE);
auto U = DeviceMatrix(u, ND, NE);
auto R = DeviceMatrix(r, ND, NE);
for (int i = tid; i < ND; i += bxy)
{
U(i, e) = 0.0;
R(i, e) = B(i, e);
}
MFEM_SYNC_THREAD;
}
DGMassPreconditioner(e, NE, ND, dinv, r, z);
DGMassAxpy(e, NE, ND, 1.0, z, 0.0, z, d); // d = z
double nom = DGMassDot<NB>(e, NE, ND, d, r);
if (nom < 0.0) { return; /* Not positive definite */ }
double r0 = fmax(nom*RELTOL*RELTOL, ABSTOL*ABSTOL);
if (nom <= r0) { return; /* Converged */ }
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, d, z, d1d, q1d);
double den = DGMassDot<NB>(e, NE, ND, z, d);
if (den <= 0.0)
{
DGMassDot<NB>(e, NE, ND, d, d);
// d2 > 0 => not positive definite
if (den == 0.0) { return; }
}
// start iteration
int i = 1;
while (true)
{
const double alpha = nom/den;
DGMassAxpy(e, NE, ND, 1.0, u, alpha, d, u); // u = u + alpha*d
DGMassAxpy(e, NE, ND, 1.0, r, -alpha, z, r); // r = r - alpha*A*d
DGMassPreconditioner(e, NE, ND, dinv, r, z);
double betanom = DGMassDot<NB>(e, NE, ND, r, z);
if (betanom < 0.0) { return; /* Not positive definite */ }
if (betanom <= r0) { break; /* Converged */ }
if (++i > MAXIT) { break; }
const double beta = betanom/nom;
DGMassAxpy(e, NE, ND, 1.0, z, beta, d, d); // d = z + beta*d
DGMassApply<DIM,D1D,Q1D>(e, NE, B, Bt, pa_data, d, z, d1d, q1d); // z = A d
den = DGMassDot<NB>(e, NE, ND, d, z);
if (den <= 0.0)
{
DGMassDot<NB>(e, NE, ND, d, d);
// d2 > 0 => not positive definite
if (den == 0.0) { break; }
}
nom = betanom;
}
if (CHANGE_BASIS)
{
DGMassBasis<DIM,D1D,MAX_D1D>(e, NE, q2d_B, u, u, d1d);
}
});
}
void DGMassInverse::Mult(const Vector &Mu, Vector &u) const
{
// Dispatch to templated version based on dim, d1d, and q1d.
const int dim = fes.GetMesh()->Dimension();
const int d1d = m->dofs1D;
const int q1d = m->quad1D;
const int id = (d1d << 4) | q1d;
if (dim == 2)
{
switch (id)
{
case 0x11: return DGMassCGIteration<2,1,1>(Mu, u);
case 0x22: return DGMassCGIteration<2,2,2>(Mu, u);
case 0x33: return DGMassCGIteration<2,3,3>(Mu, u);
case 0x35: return DGMassCGIteration<2,3,5>(Mu, u);
case 0x44: return DGMassCGIteration<2,4,4>(Mu, u);
case 0x46: return DGMassCGIteration<2,4,6>(Mu, u);
case 0x55: return DGMassCGIteration<2,5,5>(Mu, u);
case 0x57: return DGMassCGIteration<2,5,7>(Mu, u);
case 0x66: return DGMassCGIteration<2,6,6>(Mu, u);
case 0x68: return DGMassCGIteration<2,6,8>(Mu, u);
default: return DGMassCGIteration<2>(Mu, u); // Fallback
}
}
else if (dim == 3)
{
switch (id)
{
case 0x22: return DGMassCGIteration<3,2,2>(Mu, u);
case 0x23: return DGMassCGIteration<3,2,3>(Mu, u);
case 0x33: return DGMassCGIteration<3,3,3>(Mu, u);
case 0x34: return DGMassCGIteration<3,3,4>(Mu, u);
case 0x35: return DGMassCGIteration<3,3,5>(Mu, u);
case 0x44: return DGMassCGIteration<3,4,4>(Mu, u);
case 0x45: return DGMassCGIteration<3,4,5>(Mu, u);
case 0x46: return DGMassCGIteration<3,4,6>(Mu, u);
case 0x48: return DGMassCGIteration<3,4,8>(Mu, u);
case 0x55: return DGMassCGIteration<3,5,5>(Mu, u);
case 0x56: return DGMassCGIteration<3,5,6>(Mu, u);
case 0x57: return DGMassCGIteration<3,5,7>(Mu, u);
case 0x58: return DGMassCGIteration<3,5,8>(Mu, u);
case 0x66: return DGMassCGIteration<3,6,6>(Mu, u);
case 0x67: return DGMassCGIteration<3,6,7>(Mu, u);
default: return DGMassCGIteration<3>(Mu, u); // Fallback
}
}
}
} // namespace mfem
+112
View File
@@ -0,0 +1,112 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_DGMASSINV_HPP
#define MFEM_DGMASSINV_HPP
#include "../linalg/operator.hpp"
#include "fespace.hpp"
namespace mfem
{
/// @brief Solver for the discontinuous Galerkin mass matrix.
///
/// This class performs a @a local (diagonally preconditioned) conjugate
/// gradient iteration for each element. Optionally, a change of basis is
/// performed to iterate on a better-conditioned system. This class fully
/// supports execution on device (GPU).
class DGMassInverse : public Solver
{
protected:
DG_FECollection fec; ///< FE collection in requested basis.
FiniteElementSpace fes; ///< FE space in requested basis.
const DofToQuad *d2q; ///< Change of basis. Not owned.
Array<double> B_; ///< Inverse of change of basis.
Array<double> Bt_; ///< Inverse of change of basis, transposed.
class BilinearForm *M; ///< Mass bilinear form, owned.
class MassIntegrator *m; ///< Mass integrator, owned by the form @ref M.
Vector diag_inv; ///< Jacobi preconditioner.
double rel_tol = 1e-12; ///< Relative CG tolerance.
double abs_tol = 1e-12; ///< Absolute CG tolerance.
int max_iter = 100; ///< Maximum number of CG iterations;
/// @name Intermediate vectors needed for CG three-term recurrence.
///@{
mutable Vector r_, d_, z_, b2_;
///@}
/// @brief Protected constructor, used internally.
///
/// Custom coefficient and integration rule are used if @a coeff and @a ir
/// are non-NULL.
DGMassInverse(FiniteElementSpace &fes_, Coefficient *coeff,
const IntegrationRule *ir, int btype);
public:
/// @brief Construct the DG inverse mass operator for @a fes_.
///
/// The basis type @a btype determines which basis should be used internally
/// in the solver. This <b>does not</b> have to be the same basis as @a fes_.
/// The best choice is typically BasisType::GaussLegendre because it is
/// well-preconditioned by its diagonal.
///
/// The solution and right-hand side used for the solver are not affected by
/// this basis (they correspond to the basis of @a fes_). @a btype is only
/// used internally, and only has an effect on the convergence rate.
DGMassInverse(FiniteElementSpace &fes_, int btype=BasisType::GaussLegendre);
/// @brief Construct the DG inverse mass operator for @a fes_ with
/// Coefficient @a coeff.
///
/// @sa DGMassInverse(FiniteElementSpace&, int) for information about @a
/// btype.
DGMassInverse(FiniteElementSpace &fes_, Coefficient &coeff,
int btype=BasisType::GaussLegendre);
/// @brief Construct the DG inverse mass operator for @a fes_ with
/// Coefficient @a coeff and IntegrationRule @a ir.
///
/// @sa DGMassInverse(FiniteElementSpace&, int) for information about @a
/// btype.
DGMassInverse(FiniteElementSpace &fes_, Coefficient &coeff,
const IntegrationRule &ir, int btype=BasisType::GaussLegendre);
/// @brief Construct the DG inverse mass operator for @a fes_ with
/// IntegrationRule @a ir.
///
/// @sa DGMassInverse(FiniteElementSpace&, int) for information about @a
/// btype.
DGMassInverse(FiniteElementSpace &fes_, const IntegrationRule &ir,
int btype=BasisType::GaussLegendre);
/// @brief Solve the system M b = u.
///
/// If @ref iterative_mode is @a true, @a u is used as an initial guess.
void Mult(const Vector &b, Vector &u) const;
/// Not implemented. Aborts.
void SetOperator(const Operator &op);
/// Set the relative tolerance.
void SetRelTol(const double rel_tol_);
/// Set the absolute tolerance.
void SetAbsTol(const double abs_tol_);
/// Set the maximum number of iterations.
void SetMaxIter(const double max_iter_);
/// Recompute operator and preconditioner (when coefficient or mesh changes).
void Update();
~DGMassInverse();
/// @brief Solve the system M b = u. <b>Not part of the public interface.</b>
/// @note This member function must be public because it contains an
/// MFEM_FORALL kernel (nvcc limitation)
template<int DIM, int D1D = 0, int Q1D = 0>
void DGMassCGIteration(const Vector &b_, Vector &u_) const;
};
} // namespace mfem
#endif
+295
View File
@@ -0,0 +1,295 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_DGMASSINV_KERNELS_HPP
#define MFEM_DGMASSINV_KERNELS_HPP
#include "bilininteg_mass_pa.hpp"
#include "../linalg/kernels.hpp"
#include "kernels.hpp"
namespace mfem
{
namespace internal
{
void MakeReciprocal(int n, double *x)
{
MFEM_FORALL(i, n, x[i] = 1.0/x[i]; );
}
template <int DIM, int D1D, int Q1D>
MFEM_HOST_DEVICE inline
void DGMassApply(const int e,
const int NE,
const double *B,
const double *Bt,
const double *pa_data,
const double *x,
double *y,
const int d1d = 0,
const int q1d = 0)
{
constexpr bool use_smem = (D1D > 0 && Q1D > 0);
constexpr bool ACCUM = false;
constexpr int NBZ = 1;
if (use_smem)
{
// cannot specialize functions below with D1D or Q1D equal to zero
// (this branch only runs with D1D and Q1D are both positive)
constexpr int TD1D = D1D ? D1D : 1;
constexpr int TQ1D = Q1D ? Q1D : 1;
if (DIM == 2)
{
SmemPAMassApply2D_Element<TD1D,TQ1D,NBZ,ACCUM>(e, NE, B, pa_data, x, y);
}
else if (DIM == 3)
{
SmemPAMassApply3D_Element<TD1D,TQ1D,ACCUM>(e, NE, B, pa_data, x, y);
}
else
{
MFEM_ABORT_KERNEL("Unsupported dimension.");
}
}
else
{
if (DIM == 2)
{
PAMassApply2D_Element<ACCUM>(e, NE, B, Bt, pa_data, x, y, d1d, q1d);
}
else if (DIM == 3)
{
PAMassApply3D_Element<ACCUM>(e, NE, B, Bt, pa_data, x, y, d1d, q1d);
}
else
{
MFEM_ABORT_KERNEL("Unsupported dimension.");
}
}
}
MFEM_HOST_DEVICE inline
void DGMassPreconditioner(const int e,
const int NE,
const int ND,
const double *dinv,
const double *x,
double *y)
{
const auto X = ConstDeviceMatrix(x, ND, NE);
const auto D = ConstDeviceMatrix(dinv, ND, NE);
auto Y = DeviceMatrix(y, ND, NE);
const int tid = MFEM_THREAD_ID(x) + MFEM_THREAD_SIZE(x)*MFEM_THREAD_ID(y);
const int bxy = MFEM_THREAD_SIZE(x)*MFEM_THREAD_SIZE(y);
for (int i = tid; i < ND; i += bxy)
{
Y(i, e) = D(i, e)*X(i, e);
}
MFEM_SYNC_THREAD;
}
MFEM_HOST_DEVICE inline
void DGMassAxpy(const int e,
const int NE,
const int ND,
const double a,
const double *x,
const double b,
const double *y,
double *z)
{
const auto X = ConstDeviceMatrix(x, ND, NE);
const auto Y = ConstDeviceMatrix(y, ND, NE);
auto Z = DeviceMatrix(z, ND, NE);
const int tid = MFEM_THREAD_ID(x) + MFEM_THREAD_SIZE(x)*MFEM_THREAD_ID(y);
const int bxy = MFEM_THREAD_SIZE(x)*MFEM_THREAD_SIZE(y);
for (int i = tid; i < ND; i += bxy)
{
Z(i, e) = a*X(i, e) + b*Y(i, e);
}
MFEM_SYNC_THREAD;
}
template <int NB>
MFEM_HOST_DEVICE inline
double DGMassDot(const int e,
const int NE,
const int ND,
const double *x,
const double *y)
{
const auto X = ConstDeviceMatrix(x, ND, NE);
const auto Y = ConstDeviceMatrix(y, ND, NE);
const int tid = MFEM_THREAD_ID(x) + MFEM_THREAD_SIZE(x)*MFEM_THREAD_ID(y);
const int bxy = MFEM_THREAD_SIZE(x)*MFEM_THREAD_SIZE(y);
MFEM_SHARED double s_dot[NB*NB];
s_dot[tid] = 0.0;
for (int i = tid; i < ND; i += bxy) { s_dot[tid] += X(i,e)*Y(i,e); }
MFEM_SYNC_THREAD;
if (bxy > 512 && tid + 512 < bxy) { s_dot[tid] += s_dot[tid + 512]; }
MFEM_SYNC_THREAD;
if (bxy > 256 && tid < 256 && tid + 256 < bxy) { s_dot[tid] += s_dot[tid + 256]; }
MFEM_SYNC_THREAD;
if (bxy > 128 && tid < 128 && tid + 128 < bxy) { s_dot[tid] += s_dot[tid + 128]; }
MFEM_SYNC_THREAD;
if (bxy > 64 && tid < 64 && tid + 64 < bxy) { s_dot[tid] += s_dot[tid + 64]; }
MFEM_SYNC_THREAD;
if (bxy > 32 && tid < 32 && tid + 32 < bxy) { s_dot[tid] += s_dot[tid + 32]; }
MFEM_SYNC_THREAD;
if (bxy > 16 && tid < 16 && tid + 16 < bxy) { s_dot[tid] += s_dot[tid + 16]; }
MFEM_SYNC_THREAD;
if (bxy > 8 && tid < 8 && tid + 8 < bxy) { s_dot[tid] += s_dot[tid + 8]; }
MFEM_SYNC_THREAD;
if (bxy > 4 && tid < 4 && tid + 4 < bxy) { s_dot[tid] += s_dot[tid + 4]; }
MFEM_SYNC_THREAD;
if (bxy > 2 && tid < 2 && tid + 2 < bxy) { s_dot[tid] += s_dot[tid + 2]; }
MFEM_SYNC_THREAD;
if (bxy > 1 && tid < 1 && tid + 1 < bxy) { s_dot[tid] += s_dot[tid + 1]; }
MFEM_SYNC_THREAD;
return s_dot[0];
}
template<int T_D1D = 0, int MAX_D1D = 0>
MFEM_HOST_DEVICE inline
void DGMassBasis2D(const int e,
const int NE,
const double *b_,
const double *x_,
double *y_,
const int d1d = 0)
{
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
const int D1D = T_D1D ? T_D1D : d1d;
const auto b = Reshape(b_, D1D, D1D);
const auto x = Reshape(x_, D1D, D1D, NE);
auto y = Reshape(y_, D1D, D1D, NE);
MFEM_SHARED double sB[MD1*MD1];
MFEM_SHARED double sm0[MD1*MD1];
MFEM_SHARED double sm1[MD1*MD1];
kernels::internal::LoadB<MD1,MD1>(D1D,D1D,b,sB);
ConstDeviceMatrix B(sB, D1D,D1D);
DeviceMatrix DD(sm0, MD1, MD1);
DeviceMatrix DQ(sm1, MD1, MD1);
DeviceMatrix QQ(sm0, MD1, MD1);
kernels::internal::LoadX(e,D1D,x,DD);
kernels::internal::EvalX(D1D,D1D,B,DD,DQ);
kernels::internal::EvalY(D1D,D1D,B,DQ,QQ);
MFEM_SYNC_THREAD; // sync here to allow in-place evaluations
MFEM_FOREACH_THREAD(qy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,D1D)
{
y(qx,qy,e) = QQ(qx,qy);
}
}
MFEM_SYNC_THREAD;
}
template<int T_D1D = 0, int MAX_D1D = 0>
MFEM_HOST_DEVICE inline
void DGMassBasis3D(const int e,
const int NE,
const double *b_,
const double *x_,
double *y_,
const int d1d = 0)
{
const int D1D = T_D1D ? T_D1D : d1d;
const auto b = Reshape(b_, D1D, D1D);
const auto x = Reshape(x_, D1D, D1D, D1D, NE);
auto y = Reshape(y_, D1D, D1D, D1D, NE);
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
MFEM_SHARED double sB[MD1*MD1];
MFEM_SHARED double sm0[MD1*MD1*MD1];
MFEM_SHARED double sm1[MD1*MD1*MD1];
kernels::internal::LoadB<MD1,MD1>(D1D,D1D,b,sB);
ConstDeviceMatrix B(sB, D1D,D1D);
DeviceCube DDD(sm0, MD1,MD1,MD1);
DeviceCube DDQ(sm1, MD1,MD1,MD1);
DeviceCube DQQ(sm0, MD1,MD1,MD1);
DeviceCube QQQ(sm1, MD1,MD1,MD1);
kernels::internal::LoadX(e,D1D,x,DDD);
kernels::internal::EvalX(D1D,D1D,B,DDD,DDQ);
kernels::internal::EvalY(D1D,D1D,B,DDQ,DQQ);
kernels::internal::EvalZ(D1D,D1D,B,DQQ,QQQ);
MFEM_SYNC_THREAD; // sync here to allow in-place evaluation
MFEM_FOREACH_THREAD(qz,z,D1D)
{
MFEM_FOREACH_THREAD(qy,y,D1D)
{
for (int qx = 0; qx < D1D; ++qx)
{
y(qx,qy,qz,e) = QQQ(qz,qy,qx);
}
}
}
MFEM_SYNC_THREAD;
}
template<int DIM, int T_D1D = 0, int MAX_D1D = 0>
MFEM_HOST_DEVICE inline
void DGMassBasis(const int e,
const int NE,
const double *b_,
const double *x_,
double *y_,
const int d1d = 0)
{
if (DIM == 2)
{
DGMassBasis2D<T_D1D, MAX_D1D>(e, NE, b_, x_, y_, d1d);
}
else if (DIM == 3)
{
DGMassBasis3D<T_D1D, MAX_D1D>(e, NE, b_, x_, y_, d1d);
}
else
{
MFEM_ABORT_KERNEL("Dimension not supported.");
}
}
} // namespace internal
} // namespace mfem
#endif
+2 -2
View File
@@ -159,7 +159,7 @@ void KellyErrorEstimator::ComputeEstimates()
// the FaceInfo class [1]. Also, the FaceElementTransformations
// documentation [2] may be helpful to grasp what is going on. Note
// that the FaceElementTransformations also works in the non-
// conforming case to transfer the gauss points from the slave to
// conforming case to transfer the Gauss points from the slave to
// the master element.
// [1]
// https://github.com/mfem/mfem/blob/02d0bfe9c18ce049c3c93a6a4208080fcfc96991/mesh/mesh.hpp#L94
@@ -417,7 +417,7 @@ void KellyErrorEstimator::ComputeEstimates()
Vector val(flux_space->GetVDim());
flux->GetVectorValue(FT->Elem2No, ip, val);
// Evaluate gauss point
// Evaluate Gauss point
Vector normal(mesh->SpaceDimension());
FT->Face->SetIntPoint(&fip);
if (mesh->Dimension() == mesh->SpaceDimension())
+2 -2
View File
@@ -314,7 +314,7 @@ void ND_HexahedronElement::CalcVShape(const IntegrationPoint &ip,
#ifdef MFEM_THREAD_SAFE
Vector shape_cx(p + 1), shape_ox(p), shape_cy(p + 1), shape_oy(p);
Vector shape_cz(p + 1), shape_oz(p);
Vector dshape_cx, dshape_cy, dshape_cz;
Vector dshape_cx(p + 1), dshape_cy(p + 1), dshape_cz(p + 1);
#endif
if (obasis1d.IsIntegratedType())
@@ -656,7 +656,7 @@ void ND_QuadrilateralElement::CalcVShape(const IntegrationPoint &ip,
#ifdef MFEM_THREAD_SAFE
Vector shape_cx(p + 1), shape_ox(p), shape_cy(p + 1), shape_oy(p);
Vector dshape_cx, dshape_cy;
Vector dshape_cx(p + 1), dshape_cy(p + 1);
#endif
if (obasis1d.IsIntegratedType())
+2 -2
View File
@@ -145,7 +145,7 @@ void RT_QuadrilateralElement::CalcVShape(const IntegrationPoint &ip,
#ifdef MFEM_THREAD_SAFE
Vector shape_cx(pp1 + 1), shape_ox(pp1), shape_cy(pp1 + 1), shape_oy(pp1);
Vector dshape_cx, dshape_cy;
Vector dshape_cx(pp1 + 1), dshape_cy(pp1 + 1);
#endif
if (obasis1d.IsIntegratedType())
@@ -473,7 +473,7 @@ void RT_HexahedronElement::CalcVShape(const IntegrationPoint &ip,
#ifdef MFEM_THREAD_SAFE
Vector shape_cx(pp1 + 1), shape_ox(pp1), shape_cy(pp1 + 1), shape_oy(pp1);
Vector shape_cz(pp1 + 1), shape_oz(pp1);
Vector dshape_cx, dshape_cy, dshape_cz;
Vector dshape_cx(pp1 + 1), dshape_cy(pp1 + 1), dshape_cz(pp1 + 1);
#endif
if (obasis1d.IsIntegratedType())
+10 -6
View File
@@ -53,8 +53,12 @@ public:
virtual int DofForGeometry(Geometry::Type GeomType) const = 0;
/** @brief Returns an array, say p, that maps a local permuted index i to
a local base index: base_i = p[i]. */
/** @brief Returns an array, say p, that maps a local permuted index i to a
local base index: base_i = p[i].
@note Only provides information about interior dofs. See
FiniteElementCollection::SubDofOrder if interior \a and boundary dof
order is needed. */
virtual const int *DofOrderForOrientation(Geometry::Type GeomType,
int Or) const = 0;
@@ -95,10 +99,10 @@ public:
| RT_ValTrace_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | VALUE | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_Trace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | INTEGRAL | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| RT_ValTrace@[BTYPE]_[DIM]_[ORDER] | H^{1/2} | * | 1 / 0 | VALUE | H^{1/2}-conforming trace elements for H(div) defined on the interface between mesh elements (faces) |
| L2_[DIM]_[ORDER] | L2 | * | 0 | VALUE | Discontinous L2 elements |
| L2_T[BTYPE]_[DIM]_[ORDER] | L2 | * | 0 | VALUE | Discontinous L2 elements |
| L2Int_[DIM]_[ORDER] | L2 | * | 0 | INTEGRAL | Discontinous L2 elements |
| L2Int_T[BTYPE]_[DIM]_[ORDER] | L2 | * | 0 | INTEGRAL | Discontinous L2 elements |
| L2_[DIM]_[ORDER] | L2 | * | 0 | VALUE | Discontinuous L2 elements |
| L2_T[BTYPE]_[DIM]_[ORDER] | L2 | * | 0 | VALUE | Discontinuous L2 elements |
| L2Int_[DIM]_[ORDER] | L2 | * | 0 | INTEGRAL | Discontinuous L2 elements |
| L2Int_T[BTYPE]_[DIM]_[ORDER] | L2 | * | 0 | INTEGRAL | Discontinuous L2 elements |
| DG_Iface_[DIM]_[ORDER] | - | * | 0 | VALUE | Discontinuous elements on the interface between mesh elements (faces) |
| DG_Iface@[BTYPE]_[DIM]_[ORDER] | - | * | 0 | VALUE | Discontinuous elements on the interface between mesh elements (faces) |
| DG_IntIface_[DIM]_[ORDER] | - | * | 0 | INTEGRAL | Discontinuous elements on the interface between mesh elements (faces) |
+1
View File
@@ -45,6 +45,7 @@
#include "multigrid.hpp"
#include "ceed/solvers/algebraic.hpp"
#include "lor/lor.hpp"
#include "dgmassinv.hpp"
#ifdef MFEM_USE_MPI
#include "pfespace.hpp"
+4 -60
View File
@@ -1199,8 +1199,6 @@ void FiniteElementSpace::BuildConformingInterpolation() const
MakeVDimMatrix(*cR);
if (cR_hp) { MakeVDimMatrix(*cR_hp); }
}
cP->EnsureMultTranspose();
}
void FiniteElementSpace::MakeVDimMatrix(SparseMatrix &mat) const
@@ -1258,7 +1256,7 @@ int FiniteElementSpace::GetNConformingDofs() const
return P ? (P->Width() / vdim) : ndofs;
}
const Operator *FiniteElementSpace::GetElementRestriction(
const ElementRestrictionOperator *FiniteElementSpace::GetElementRestriction(
ElementDofOrdering e_ordering) const
{
// Check if we have a discontinuous space using the FE collection:
@@ -1273,7 +1271,7 @@ const Operator *FiniteElementSpace::GetElementRestriction(
// The output E-vector layout is: ND x VDIM x NE.
L2E_nat.Reset(new L2ElementRestriction(*this));
}
return L2E_nat.Ptr();
return L2E_nat.Is<ElementRestrictionOperator>();
}
if (e_ordering == ElementDofOrdering::LEXICOGRAPHIC)
{
@@ -1281,14 +1279,14 @@ const Operator *FiniteElementSpace::GetElementRestriction(
{
L2E_lex.Reset(new ElementRestriction(*this, e_ordering));
}
return L2E_lex.Ptr();
return L2E_lex.Is<ElementRestrictionOperator>();
}
// e_ordering == ElementDofOrdering::NATIVE
if (L2E_nat.Ptr() == NULL)
{
L2E_nat.Reset(new ElementRestriction(*this, e_ordering));
}
return L2E_nat.Ptr();
return L2E_nat.Is<ElementRestrictionOperator>();
}
const FaceRestriction *FiniteElementSpace::GetFaceRestriction(
@@ -3613,58 +3611,4 @@ FiniteElementCollection *FiniteElementSpace::Load(Mesh *m, std::istream &input)
return r_fec;
}
void QuadratureSpace::Construct()
{
// protected method
int offset = 0;
const int num_elem = mesh->GetNE();
element_offsets = new int[num_elem + 1];
for (int g = 0; g < Geometry::NumGeom; g++)
{
int_rule[g] = NULL;
}
for (int i = 0; i < num_elem; i++)
{
element_offsets[i] = offset;
int geom = mesh->GetElementBaseGeometry(i);
if (int_rule[geom] == NULL)
{
int_rule[geom] = &IntRules.Get(geom, order);
}
offset += int_rule[geom]->GetNPoints();
}
element_offsets[num_elem] = size = offset;
}
QuadratureSpace::QuadratureSpace(Mesh *mesh_, std::istream &in)
: mesh(mesh_)
{
const char *msg = "invalid input stream";
string ident;
in >> ident; MFEM_VERIFY(ident == "QuadratureSpace", msg);
in >> ident; MFEM_VERIFY(ident == "Type:", msg);
in >> ident;
if (ident == "default_quadrature")
{
in >> ident; MFEM_VERIFY(ident == "Order:", msg);
in >> order;
}
else
{
MFEM_ABORT("unknown QuadratureSpace type: " << ident);
return;
}
Construct();
}
void QuadratureSpace::Save(std::ostream &os) const
{
os << "QuadratureSpace\n"
<< "Type: default_quadrature\n"
<< "Order: " << order << '\n';
}
} // namespace mfem
+29 -56
View File
@@ -47,6 +47,14 @@ public:
static void DofsToVDofs(int ndofs, int vdim, Array<int> &dofs);
};
/// @brief Type describing possible layouts for Q-vectors.
/// @sa QuadratureInterpolator and FaceQuadratureInterpolator.
enum class QVectorLayout
{
byNODES, ///< NQPT x VDIM x NE (values) / NQPT x VDIM x DIM x NE (grads)
byVDIM ///< VDIM x NQPT x NE (values) / VDIM x DIM x NQPT x NE (grads)
};
template <> inline int
Ordering::Map<Ordering::byNODES>(int ndofs, int vdim, int dof, int vd)
{
@@ -396,7 +404,7 @@ public:
FiniteElementSpace();
/** @brief Copy constructor: deep copy all data from @a orig except the Mesh,
the FiniteElementCollection, ans some derived data. */
the FiniteElementCollection, and some derived data. */
/** If the @a mesh or @a fec pointers are NULL (default), then the new
FiniteElementSpace will reuse the respective pointers from @a orig. If
any of these pointers is not NULL, the given pointer will be used instead
@@ -508,7 +516,8 @@ public:
L2ElementRestriction class.
The returned Operator is owned by the FiniteElementSpace. */
const Operator *GetElementRestriction(ElementDofOrdering e_ordering) const;
const ElementRestrictionOperator *GetElementRestriction(
ElementDofOrdering e_ordering) const;
/// Return an Operator that converts L-vectors to E-vectors on each face.
virtual const FaceRestriction *GetFaceRestriction(
@@ -522,7 +531,12 @@ public:
Operator returned by GetElementRestriction().
All elements will use the same IntegrationRule, @a ir as the target
quadrature points. */
quadrature points.
@note The returned pointer is shared. A good practice, before using it,
is to set all its properties to their expected values, as other parts of
the code may also change them. That is, it's good to call
SetOutputLayout() and DisableTensorProducts() before interpolating. */
const QuadratureInterpolator *GetQuadratureInterpolator(
const IntegrationRule &ir) const;
@@ -533,12 +547,22 @@ public:
Operator returned by GetElementRestriction().
The target quadrature points in the elements are described by the given
QuadratureSpace, @a qs. */
QuadratureSpace, @a qs.
@note The returned pointer is shared. A good practice, before using it,
is to set all its properties to their expected values, as other parts of
the code may also change them. That is, it's good to call
SetOutputLayout() and DisableTensorProducts() before interpolating. */
const QuadratureInterpolator *GetQuadratureInterpolator(
const QuadratureSpace &qs) const;
/** @brief Return a FaceQuadratureInterpolator that interpolates E-vectors to
quadrature point values and/or derivatives (Q-vectors). */
quadrature point values and/or derivatives (Q-vectors).
@note The returned pointer is shared. A good practice, before using it,
is to set all its properties to their expected values, as other parts of
the code may also change them. That is, it's good to call
SetOutputLayout() and DisableTensorProducts() before interpolating. */
const FaceQuadratureInterpolator *GetFaceQuadratureInterpolator(
const IntegrationRule &ir, FaceType type) const;
@@ -929,57 +953,6 @@ public:
virtual ~FiniteElementSpace();
};
/// Class representing the storage layout of a QuadratureFunction.
/** Multiple QuadratureFunction%s can share the same QuadratureSpace. */
class QuadratureSpace
{
protected:
friend class QuadratureFunction; // Uses the element_offsets.
Mesh *mesh;
int order;
int size;
const IntegrationRule *int_rule[Geometry::NumGeom];
int *element_offsets; // scalar offsets; size = number of elements + 1
// protected functions
// Assuming mesh and order are set, construct the members: int_rule,
// element_offsets, and size.
void Construct();
public:
/// Create a QuadratureSpace based on the global rules from #IntRules.
QuadratureSpace(Mesh *mesh_, int order_)
: mesh(mesh_), order(order_) { Construct(); }
/// Read a QuadratureSpace from the stream @a in.
QuadratureSpace(Mesh *mesh_, std::istream &in);
virtual ~QuadratureSpace() { delete [] element_offsets; }
/// Return the total number of quadrature points.
int GetSize() const { return size; }
/// Return the order of the quadrature rule(s) used by all elements.
int GetOrder() const { return order; }
/// Returns the mesh
inline Mesh *GetMesh() const { return mesh; }
/// Returns number of elements in the mesh.
inline int GetNE() const { return mesh->GetNE(); }
/// Get the IntegrationRule associated with mesh element @a idx.
const IntegrationRule &GetElementIntRule(int idx) const
{ return *int_rule[mesh->GetElementBaseGeometry(idx)]; }
/// Write the QuadratureSpace to the stream @a out.
void Save(std::ostream &out) const;
};
/// @brief Return true if the mesh contains only one topology and the elements are tensor elements.
inline bool UsesTensorBasis(const FiniteElementSpace& fes)
{
+36 -201
View File
@@ -12,6 +12,7 @@
// Implementation of GridFunction
#include "gridfunc.hpp"
#include "quadinterpolator.hpp"
#include "../mesh/nurbs.hpp"
#include "../general/text.hpp"
@@ -188,6 +189,8 @@ void GridFunction::Update()
{
SetSize(fes->GetVSize());
}
if (t_vec.Size() > 0) { SetTrueVector(); }
}
void GridFunction::SetSpace(FiniteElementSpace *f)
@@ -2761,7 +2764,8 @@ void GridFunction::ProjectBdrCoefficientTangent(
}
double GridFunction::ComputeL2Error(
Coefficient *exsol[], const IntegrationRule *irs[]) const
Coefficient *exsol[], const IntegrationRule *irs[],
const Array<int> *elems) const
{
double error = 0.0, a;
const FiniteElement *fe;
@@ -2772,6 +2776,7 @@ double GridFunction::ComputeL2Error(
for (i = 0; i < fes->GetNE(); i++)
{
if (elems != NULL && (*elems)[i] == 0) { continue; }
fe = fes->GetFE(i);
fdof = fe->GetDof();
transf = fes->GetElementTransformation(i);
@@ -2815,7 +2820,7 @@ double GridFunction::ComputeL2Error(
double GridFunction::ComputeL2Error(
VectorCoefficient &exsol, const IntegrationRule *irs[],
Array<int> *elems) const
const Array<int> *elems) const
{
double error = 0.0;
const FiniteElement *fe;
@@ -3234,7 +3239,7 @@ double GridFunction::ComputeMaxError(
double GridFunction::ComputeW11Error(
Coefficient *exsol, VectorCoefficient *exgrad, int norm_type,
Array<int> *elems, const IntegrationRule *irs[]) const
const Array<int> *elems, const IntegrationRule *irs[]) const
{
// assuming vdim is 1
int i, fdof, dim, intorder, j, k;
@@ -3340,7 +3345,8 @@ double GridFunction::ComputeW11Error(
double GridFunction::ComputeLpError(const double p, Coefficient &exsol,
Coefficient *weight,
const IntegrationRule *irs[]) const
const IntegrationRule *irs[],
const Array<int> *elems) const
{
double error = 0.0;
const FiniteElement *fe;
@@ -3349,6 +3355,7 @@ double GridFunction::ComputeLpError(const double p, Coefficient &exsol,
for (int i = 0; i < fes->GetNE(); i++)
{
if (elems != NULL && (*elems)[i] == 0) { continue; }
fe = fes->GetFE(i);
const IntegrationRule *ir;
if (irs)
@@ -3968,178 +3975,6 @@ void GridFunction::LegacyNCReorder()
Vector::Swap(tmp);
}
QuadratureFunction::QuadratureFunction(Mesh *mesh, std::istream &in)
{
const char *msg = "invalid input stream";
string ident;
qspace = new QuadratureSpace(mesh, in);
own_qspace = true;
in >> ident; MFEM_VERIFY(ident == "VDim:", msg);
in >> vdim;
Load(in, vdim*qspace->GetSize());
}
QuadratureFunction & QuadratureFunction::operator=(double value)
{
Vector::operator=(value);
return *this;
}
QuadratureFunction & QuadratureFunction::operator=(const Vector &v)
{
MFEM_ASSERT(qspace && v.Size() == this->Size(), "");
Vector::operator=(v);
return *this;
}
QuadratureFunction & QuadratureFunction::operator=(const QuadratureFunction &v)
{
return this->operator=((const Vector &)v);
}
void QuadratureFunction::Save(std::ostream &os) const
{
qspace->Save(os);
os << "VDim: " << vdim << '\n'
<< '\n';
Vector::Print(os, vdim);
os.flush();
}
std::ostream &operator<<(std::ostream &os, const QuadratureFunction &qf)
{
qf.Save(os);
return os;
}
void QuadratureFunction::SaveVTU(std::ostream &os, VTKFormat format,
int compression_level) const
{
os << R"(<VTKFile type="UnstructuredGrid" version="0.1")";
if (compression_level != 0)
{
os << R"( compressor="vtkZLibDataCompressor")";
}
os << " byte_order=\"" << VTKByteOrder() << "\">\n";
os << "<UnstructuredGrid>\n";
const char *fmt_str = (format == VTKFormat::ASCII) ? "ascii" : "binary";
const char *type_str = (format != VTKFormat::BINARY32) ? "Float64" : "Float32";
std::vector<char> buf;
int np = qspace->GetSize();
int ne = qspace->GetNE();
int sdim = qspace->GetMesh()->SpaceDimension();
// For quadrature functions, each point is a vertex cell, so number of cells
// is equal to number of points
os << "<Piece NumberOfPoints=\"" << np
<< "\" NumberOfCells=\"" << np << "\">\n";
// print out the points
os << "<Points>\n";
os << "<DataArray type=\"" << type_str
<< "\" NumberOfComponents=\"3\" format=\"" << fmt_str << "\">\n";
Vector pt(sdim);
for (int i = 0; i < ne; i++)
{
ElementTransformation &T = *qspace->GetMesh()->GetElementTransformation(i);
const IntegrationRule &ir = GetElementIntRule(i);
for (int j = 0; j < ir.Size(); j++)
{
T.Transform(ir[j], pt);
WriteBinaryOrASCII(os, buf, pt[0], " ", format);
if (sdim > 1) { WriteBinaryOrASCII(os, buf, pt[1], " ", format); }
else { WriteBinaryOrASCII(os, buf, 0.0, " ", format); }
if (sdim > 2) { WriteBinaryOrASCII(os, buf, pt[2], "", format); }
else { WriteBinaryOrASCII(os, buf, 0.0, "", format); }
if (format == VTKFormat::ASCII) { os << '\n'; }
}
}
if (format != VTKFormat::ASCII)
{
WriteBase64WithSizeAndClear(os, buf, compression_level);
}
os << "</DataArray>\n";
os << "</Points>\n";
// Write cells (each cell is just a vertex)
os << "<Cells>\n";
// Connectivity
os << R"(<DataArray type="Int32" Name="connectivity" format=")"
<< fmt_str << "\">\n";
for (int i=0; i<np; ++i) { WriteBinaryOrASCII(os, buf, i, "\n", format); }
if (format != VTKFormat::ASCII)
{
WriteBase64WithSizeAndClear(os, buf, compression_level);
}
os << "</DataArray>\n";
// Offsets
os << R"(<DataArray type="Int32" Name="offsets" format=")"
<< fmt_str << "\">\n";
for (int i=0; i<np; ++i) { WriteBinaryOrASCII(os, buf, i, "\n", format); }
if (format != VTKFormat::ASCII)
{
WriteBase64WithSizeAndClear(os, buf, compression_level);
}
os << "</DataArray>\n";
// Types
os << R"(<DataArray type="UInt8" Name="types" format=")"
<< fmt_str << "\">\n";
for (int i = 0; i < np; i++)
{
uint8_t vtk_cell_type = VTKGeometry::POINT;
WriteBinaryOrASCII(os, buf, vtk_cell_type, "\n", format);
}
if (format != VTKFormat::ASCII)
{
WriteBase64WithSizeAndClear(os, buf, compression_level);
}
os << "</DataArray>\n";
os << "</Cells>\n";
os << "<PointData>\n";
os << "<DataArray type=\"" << type_str << "\" Name=\"u\" format=\""
<< fmt_str << "\" NumberOfComponents=\"" << vdim << "\">\n";
for (int i = 0; i < ne; i++)
{
DenseMatrix vals;
GetElementValues(i, vals);
for (int j = 0; j < vals.Size(); ++j)
{
for (int vd = 0; vd < vdim; ++vd)
{
WriteBinaryOrASCII(os, buf, vals(vd, j), " ", format);
}
if (format == VTKFormat::ASCII) { os << '\n'; }
}
}
if (format != VTKFormat::ASCII)
{
WriteBase64WithSizeAndClear(os, buf, compression_level);
}
os << "</DataArray>\n";
os << "</PointData>\n";
os << "</Piece>\n";
os << "</UnstructuredGrid>\n";
os << "</VTKFile>" << std::endl;
}
void QuadratureFunction::SaveVTU(const std::string &filename, VTKFormat format,
int compression_level) const
{
std::ofstream f(filename + ".vtu");
SaveVTU(f, format, compression_level);
}
double ZZErrorEstimator(BilinearFormIntegrator &blfi,
GridFunction &u,
GridFunction &flux, Vector &error_estimates,
@@ -4257,7 +4092,7 @@ void TensorProductLegendre(int dim, // input
}
else
{
// Bounding box is not reorientated no need to change orientation
// Bounding box is not reoriented no need to change orientation
x = x_in;
}
@@ -4281,44 +4116,44 @@ void TensorProductLegendre(int dim, // input
switch (dim)
{
case 1:
{
for (int i = 0; i <= order; i++)
{
poly(i) = poly_x(i);
}
}
break;
case 2:
{
for (int j = 0; j <= order; j++)
{
for (int i = 0; i <= order; i++)
{
poly(i) = poly_x(i);
int cnt = i + (order+1) * j;
poly(cnt) = poly_x(i) * poly_y(j);
}
}
break;
case 2:
}
break;
case 3:
{
for (int k = 0; k <= order; k++)
{
for (int j = 0; j <= order; j++)
{
for (int i = 0; i <= order; i++)
{
int cnt = i + (order+1) * j;
poly(cnt) = poly_x(i) * poly_y(j);
int cnt = i + (order+1) * j + (order+1) * (order+1) * k;
poly(cnt) = poly_x(i) * poly_y(j) * poly_z(k);
}
}
}
break;
case 3:
{
for (int k = 0; k <= order; k++)
{
for (int j = 0; j <= order; j++)
{
for (int i = 0; i <= order; i++)
{
int cnt = i + (order+1) * j + (order+1) * (order+1) * k;
poly(cnt) = poly_x(i) * poly_y(j) * poly_z(k);
}
}
}
}
break;
}
break;
default:
{
MFEM_ABORT("TensorProductLegendre: invalid value of dim");
}
{
MFEM_ABORT("TensorProductLegendre: invalid value of dim");
}
}
}
+29 -276
View File
@@ -129,19 +129,21 @@ public:
int CurlDim() const;
/// Read only access to the (optional) internal true-dof Vector.
/** Note that the returned Vector may be empty, if not previously allocated
or set. */
const Vector &GetTrueVector() const { return t_vec; }
const Vector &GetTrueVector() const
{
MFEM_VERIFY(t_vec.Size() > 0, "SetTrueVector() before GetTrueVector()");
return t_vec;
}
/// Read and write access to the (optional) internal true-dof Vector.
/** Note that the returned Vector may be empty, if not previously allocated
or set. */
Vector &GetTrueVector() { return t_vec; }
/** Note that @a t_vec is set if it is not allocated or set already.*/
Vector &GetTrueVector()
{ if (t_vec.Size() == 0) { SetTrueVector(); } return t_vec; }
/// Extract the true-dofs from the GridFunction.
void GetTrueDofs(Vector &tv) const;
/// Shortcut for calling GetTrueDofs() with GetTrueVector() as argument.
void SetTrueVector() { GetTrueDofs(GetTrueVector()); }
void SetTrueVector() { GetTrueDofs(t_vec); }
/// Set the GridFunction from the given true-dof vector.
virtual void SetFromTrueDofs(const Vector &tv);
@@ -476,21 +478,27 @@ public:
Array<int> &bdr_attr);
virtual double ComputeL2Error(Coefficient &exsol,
const IntegrationRule *irs[] = NULL) const
{ return ComputeLpError(2.0, exsol, NULL, irs); }
virtual double ComputeL2Error(Coefficient *exsol[],
const IntegrationRule *irs[] = NULL) const;
virtual double ComputeL2Error(VectorCoefficient &exsol,
const IntegrationRule *irs[] = NULL,
Array<int> *elems = NULL) const;
const Array<int> *elems = NULL) const;
/// Returns ||grad u_ex - grad u_h||_L2 in element ielem for H1 or L2 elements
virtual double ComputeElementGradError(int ielem, VectorCoefficient *exgrad,
const IntegrationRule *irs[] = NULL) const;
/// Returns ||u_ex - u_h||_L2 for H1 or L2 elements
/* The @a elems input variable expects a list of markers:
an elem marker equal to 1 will compute the L2 error on that element
an elem marker equal to 0 will not compute the L2 error on that element */
virtual double ComputeL2Error(Coefficient &exsol,
const IntegrationRule *irs[] = NULL,
const Array<int> *elems = NULL) const
{ return GridFunction::ComputeLpError(2.0, exsol, NULL, irs, elems); }
virtual double ComputeL2Error(VectorCoefficient &exsol,
const IntegrationRule *irs[] = NULL,
const Array<int> *elems = NULL) const;
/// Returns ||grad u_ex - grad u_h||_L2 for H1 or L2 elements
virtual double ComputeGradError(VectorCoefficient *exgrad,
const IntegrationRule *irs[] = NULL) const;
@@ -564,16 +572,20 @@ public:
{ return ComputeLpError(1.0, exsol, NULL, irs); }
virtual double ComputeW11Error(Coefficient *exsol, VectorCoefficient *exgrad,
int norm_type, Array<int> *elems = NULL,
int norm_type, const Array<int> *elems = NULL,
const IntegrationRule *irs[] = NULL) const;
virtual double ComputeL1Error(VectorCoefficient &exsol,
const IntegrationRule *irs[] = NULL) const
{ return ComputeLpError(1.0, exsol, NULL, NULL, irs); }
/* The @a elems input variable expects a list of markers:
an elem marker equal to 1 will compute the L2 error on that element
an elem marker equal to 0 will not compute the L2 error on that element */
virtual double ComputeLpError(const double p, Coefficient &exsol,
Coefficient *weight = NULL,
const IntegrationRule *irs[] = NULL) const;
const IntegrationRule *irs[] = NULL,
const Array<int> *elems = NULL) const;
/** Compute the Lp error in each element of the mesh and store the results in
the Vector @a error. The result should be of length number of elements,
@@ -755,176 +767,6 @@ public:
}
};
/** @brief Class representing a function through its values (scalar or vector)
at quadrature points. */
class QuadratureFunction : public Vector
{
protected:
QuadratureSpace *qspace; ///< Associated QuadratureSpace
int vdim; ///< Vector dimension
bool own_qspace; ///< QuadratureSpace ownership flag
public:
/// Create an empty QuadratureFunction.
/** The object can be initialized later using the SetSpace() methods. */
QuadratureFunction()
: qspace(NULL), vdim(0), own_qspace(false) { }
/** @brief Copy constructor. The QuadratureSpace ownership flag, #own_qspace,
in the new object is set to false. */
QuadratureFunction(const QuadratureFunction &orig)
: Vector(orig),
qspace(orig.qspace), vdim(orig.vdim), own_qspace(false) { }
/// Create a QuadratureFunction based on the given QuadratureSpace.
/** The QuadratureFunction does not assume ownership of the QuadratureSpace.
@note The Vector data is not initialized. */
QuadratureFunction(QuadratureSpace *qspace_, int vdim_ = 1)
: Vector(vdim_*qspace_->GetSize()),
qspace(qspace_), vdim(vdim_), own_qspace(false) { }
/** @brief Create a QuadratureFunction based on the given QuadratureSpace,
using the external data, @a qf_data. */
/** The QuadratureFunction does not assume ownership of neither the
QuadratureSpace nor the external data. */
QuadratureFunction(QuadratureSpace *qspace_, double *qf_data, int vdim_ = 1)
: Vector(qf_data, vdim_*qspace_->GetSize()),
qspace(qspace_), vdim(vdim_), own_qspace(false) { }
/// Read a QuadratureFunction from the stream @a in.
/** The QuadratureFunction assumes ownership of the read QuadratureSpace. */
QuadratureFunction(Mesh *mesh, std::istream &in);
virtual ~QuadratureFunction() { if (own_qspace) { delete qspace; } }
/// Get the associated QuadratureSpace.
QuadratureSpace *GetSpace() const { return qspace; }
/// Change the QuadratureSpace and optionally the vector dimension.
/** If the new QuadratureSpace is different from the current one, the
QuadratureFunction will not assume ownership of the new space; otherwise,
the ownership flag remains the same.
If the new vector dimension @a vdim_ < 0, the vector dimension remains
the same.
The data size is updated by calling Vector::SetSize(). */
inline void SetSpace(QuadratureSpace *qspace_, int vdim_ = -1);
/** @brief Change the QuadratureSpace, the data array, and optionally the
vector dimension. */
/** If the new QuadratureSpace is different from the current one, the
QuadratureFunction will not assume ownership of the new space; otherwise,
the ownership flag remains the same.
If the new vector dimension @a vdim_ < 0, the vector dimension remains
the same.
The data array is replaced by calling Vector::NewDataAndSize(). */
inline void SetSpace(QuadratureSpace *qspace_, double *qf_data,
int vdim_ = -1);
/// Get the vector dimension.
int GetVDim() const { return vdim; }
/// Set the vector dimension, updating the size by calling Vector::SetSize().
void SetVDim(int vdim_)
{ vdim = vdim_; SetSize(vdim*qspace->GetSize()); }
/// Get the QuadratureSpace ownership flag.
bool OwnsSpace() { return own_qspace; }
/// Set the QuadratureSpace ownership flag.
void SetOwnsSpace(bool own) { own_qspace = own; }
/// Redefine '=' for QuadratureFunction = constant.
QuadratureFunction &operator=(double value);
/// Copy the data from @a v.
/** The size of @a v must be equal to the size of the associated
QuadratureSpace #qspace times the QuadratureFunction dimension
i.e. QuadratureFunction::Size(). */
QuadratureFunction &operator=(const Vector &v);
/// Copy assignment. Only the data of the base class Vector is copied.
/** The QuadratureFunctions @a v and @a *this must have QuadratureSpaces with
the same size.
@note Defining this method overwrites the implicitly defined copy
assignment operator. */
QuadratureFunction &operator=(const QuadratureFunction &v);
/// Get the IntegrationRule associated with mesh element @a idx.
const IntegrationRule &GetElementIntRule(int idx) const
{ return qspace->GetElementIntRule(idx); }
/// Return all values associated with mesh element @a idx in a Vector.
/** The result is stored in the Vector @a values as a reference to the
global values.
Inside the Vector @a values, the index `i+vdim*j` corresponds to the
`i`-th vector component at the `j`-th quadrature point.
*/
inline void GetElementValues(int idx, Vector &values);
/// Return all values associated with mesh element @a idx in a Vector.
/** The result is stored in the Vector @a values as a copy of the
global values.
Inside the Vector @a values, the index `i+vdim*j` corresponds to the
`i`-th vector component at the `j`-th quadrature point.
*/
inline void GetElementValues(int idx, Vector &values) const;
/// Return the quadrature function values at an integration point.
/** The result is stored in the Vector @a values as a reference to the
global values. */
inline void GetElementValues(int idx, const int ip_num, Vector &values);
/// Return the quadrature function values at an integration point.
/** The result is stored in the Vector @a values as a copy to the
global values. */
inline void GetElementValues(int idx, const int ip_num, Vector &values) const;
/// Return all values associated with mesh element @a idx in a DenseMatrix.
/** The result is stored in the DenseMatrix @a values as a reference to the
global values.
Inside the DenseMatrix @a values, the `(i,j)` entry corresponds to the
`i`-th vector component at the `j`-th quadrature point.
*/
inline void GetElementValues(int idx, DenseMatrix &values);
/// Return all values associated with mesh element @a idx in a const DenseMatrix.
/** The result is stored in the DenseMatrix @a values as a copy of the
global values.
Inside the DenseMatrix @a values, the `(i,j)` entry corresponds to the
`i`-th vector component at the `j`-th quadrature point.
*/
inline void GetElementValues(int idx, DenseMatrix &values) const;
/// Write the QuadratureFunction to the stream @a out.
void Save(std::ostream &out) const;
/// @brief Write the QuadratureFunction to @a out in VTU (ParaView) format.
///
/// The data will be uncompressed if @a compression_level is zero, or if the
/// format is VTKFormat::ASCII. Otherwise, zlib compression will be used for
/// binary data.
void SaveVTU(std::ostream &out, VTKFormat format=VTKFormat::ASCII,
int compression_level=0) const;
/// @brief Save the QuadratureFunction to a VTU (ParaView) file.
///
/// The extension ".vtu" will be appended to @a filename.
/// @sa SaveVTU(std::ostream &out, VTKFormat format=VTKFormat::ASCII,
/// int compression_level=0)
void SaveVTU(const std::string &filename, VTKFormat format=VTKFormat::ASCII,
int compression_level=0) const;
};
/// Overload operator<< for std::ostream and QuadratureFunction.
std::ostream &operator<<(std::ostream &out, const QuadratureFunction &qf);
@@ -1012,95 +854,6 @@ public:
GridFunction *Extrude1DGridFunction(Mesh *mesh, Mesh *mesh2d,
GridFunction *sol, const int ny);
// Inline methods
inline void QuadratureFunction::SetSpace(QuadratureSpace *qspace_, int vdim_)
{
if (qspace_ != qspace)
{
if (own_qspace) { delete qspace; }
qspace = qspace_;
own_qspace = false;
}
vdim = (vdim_ < 0) ? vdim : vdim_;
SetSize(vdim*qspace->GetSize());
}
inline void QuadratureFunction::SetSpace(QuadratureSpace *qspace_,
double *qf_data, int vdim_)
{
if (qspace_ != qspace)
{
if (own_qspace) { delete qspace; }
qspace = qspace_;
own_qspace = false;
}
vdim = (vdim_ < 0) ? vdim : vdim_;
NewDataAndSize(qf_data, vdim*qspace->GetSize());
}
inline void QuadratureFunction::GetElementValues(int idx, Vector &values)
{
const int s_offset = qspace->element_offsets[idx];
const int sl_size = qspace->element_offsets[idx+1] - s_offset;
values.NewDataAndSize(data + vdim*s_offset, vdim*sl_size);
}
inline void QuadratureFunction::GetElementValues(int idx, Vector &values) const
{
const int s_offset = qspace->element_offsets[idx];
const int sl_size = qspace->element_offsets[idx+1] - s_offset;
values.SetSize(vdim*sl_size);
const double *q = data + vdim*s_offset;
for (int i = 0; i<values.Size(); i++)
{
values(i) = *(q++);
}
}
inline void QuadratureFunction::GetElementValues(int idx, const int ip_num,
Vector &values)
{
const int s_offset = qspace->element_offsets[idx] * vdim + ip_num * vdim;
values.NewDataAndSize(data + s_offset, vdim);
}
inline void QuadratureFunction::GetElementValues(int idx, const int ip_num,
Vector &values) const
{
const int s_offset = qspace->element_offsets[idx] * vdim + ip_num * vdim;
values.SetSize(vdim);
const double *q = data + s_offset;
for (int i = 0; i < values.Size(); i++)
{
values(i) = *(q++);
}
}
inline void QuadratureFunction::GetElementValues(int idx, DenseMatrix &values)
{
const int s_offset = qspace->element_offsets[idx];
const int sl_size = qspace->element_offsets[idx+1] - s_offset;
values.Reset(data + vdim*s_offset, vdim, sl_size);
}
inline void QuadratureFunction::GetElementValues(int idx,
DenseMatrix &values) const
{
const int s_offset = qspace->element_offsets[idx];
const int sl_size = qspace->element_offsets[idx+1] - s_offset;
values.SetSize(vdim, sl_size);
const double *q = data + vdim*s_offset;
for (int j = 0; j<sl_size; j++)
{
for (int i = 0; i<vdim; i++)
{
values(i,j) = *(q++);
}
}
}
} // namespace mfem
#endif
+88 -44
View File
@@ -168,7 +168,8 @@ void FindPointsGSLIB::Setup(Mesh &m, const double bb_t, const double newt_tol,
setupflag = true;
}
void FindPointsGSLIB::FindPoints(const Vector &point_pos)
void FindPointsGSLIB::FindPoints(const Vector &point_pos,
int point_pos_ordering)
{
MFEM_VERIFY(setupflag, "Use FindPointsGSLIB::Setup before finding points.");
points_cnt = point_pos.Size() / dim;
@@ -178,14 +179,24 @@ void FindPointsGSLIB::FindPoints(const Vector &point_pos)
gsl_ref.SetSize(points_cnt * dim);
gsl_dist.SetSize(points_cnt);
const double *xv_base[dim];
unsigned xv_stride[dim];
for (int d = 0; d < dim; d++)
{
if (point_pos_ordering == Ordering::byNODES)
{
xv_base[d] = point_pos.GetData() + d*points_cnt;
xv_stride[d] = sizeof(double);
}
else
{
xv_base[d] = point_pos.GetData() + d;
xv_stride[d] = dim*sizeof(double);
}
}
if (dim == 2)
{
const double *xv_base[2];
xv_base[0] = point_pos.GetData();
xv_base[1] = point_pos.GetData() + points_cnt;
unsigned xv_stride[2];
xv_stride[0] = sizeof(double);
xv_stride[1] = sizeof(double);
findpts_2(gsl_code.GetData(), sizeof(unsigned int),
gsl_proc.GetData(), sizeof(unsigned int),
gsl_elem.GetData(), sizeof(unsigned int),
@@ -195,14 +206,6 @@ void FindPointsGSLIB::FindPoints(const Vector &point_pos)
}
else
{
const double *xv_base[3];
xv_base[0] = point_pos.GetData();
xv_base[1] = point_pos.GetData() + points_cnt;
xv_base[2] = point_pos.GetData() + 2*points_cnt;
unsigned xv_stride[3];
xv_stride[0] = sizeof(double);
xv_stride[1] = sizeof(double);
xv_stride[2] = sizeof(double);
findpts_3(gsl_code.GetData(), sizeof(unsigned int),
gsl_proc.GetData(), sizeof(unsigned int),
gsl_elem.GetData(), sizeof(unsigned int),
@@ -227,27 +230,29 @@ void FindPointsGSLIB::FindPoints(const Vector &point_pos)
}
void FindPointsGSLIB::FindPoints(Mesh &m, const Vector &point_pos,
const double bb_t, const double newt_tol,
const int npt_max)
int point_pos_ordering, const double bb_t,
const double newt_tol, const int npt_max)
{
if (!setupflag || (mesh != &m) )
{
Setup(m, bb_t, newt_tol, npt_max);
}
FindPoints(point_pos);
FindPoints(point_pos, point_pos_ordering);
}
void FindPointsGSLIB::Interpolate(const Vector &point_pos,
const GridFunction &field_in, Vector &field_out)
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering)
{
FindPoints(point_pos);
FindPoints(point_pos, point_pos_ordering);
Interpolate(field_in, field_out);
}
void FindPointsGSLIB::Interpolate(Mesh &m, const Vector &point_pos,
const GridFunction &field_in, Vector &field_out)
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering)
{
FindPoints(m, point_pos);
FindPoints(m, point_pos, point_pos_ordering);
Interpolate(field_in, field_out);
}
@@ -860,7 +865,9 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
{
for (int i = 0; i < indl2.Size(); i++)
{
int idx = indl2[i] + j*points_cnt;
int idx = field_in.FESpace()->GetOrdering() == Ordering::byNODES ?
indl2[i] + j*points_cnt:
indl2[i]*ncomp + j;
field_out(idx) = field_out_l2(idx);
}
}
@@ -885,7 +892,17 @@ void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
{
const int dataptrin = i*points_fld,
dataptrout = i*points_cnt;
field_in_scalar.NewDataAndSize(field_in.GetData()+dataptrin, points_fld);
if (field_in.FESpace()->GetOrdering() == Ordering::byNODES)
{
field_in_scalar.NewDataAndSize(field_in.GetData()+dataptrin, points_fld);
}
else
{
for (int j = 0; j < points_fld; j++)
{
field_in_scalar(j) = field_in(i + j*ncomp);
}
}
GetNodalValues(&field_in_scalar, node_vals);
if (dim==2)
@@ -907,6 +924,17 @@ void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
points_cnt, node_vals.GetData(), fdata3D);
}
}
if (field_in.FESpace()->GetOrdering() == Ordering::byVDIM)
{
Vector field_out_temp = field_out;
for (int i = 0; i < ncomp; i++)
{
for (int j = 0; j < points_cnt; j++)
{
field_out(i + j*ncomp) = field_out_temp(j + i*points_cnt);
}
}
}
}
void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
@@ -929,9 +957,19 @@ void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
if (dim == 3) { ip.z = gsl_mfem_ref(index*dim + 2); }
Vector localval(ncomp);
field_in.GetVectorValue(gsl_mfem_elem[index], ip, localval);
for (int i = 0; i < ncomp; i++)
if (field_in.FESpace()->GetOrdering() == Ordering::byNODES)
{
field_out(index + i*npt) = localval(i);
for (int i = 0; i < ncomp; i++)
{
field_out(index + i*npt) = localval(i);
}
}
else //byVDIM
{
for (int i = 0; i < ncomp; i++)
{
field_out(index*ncomp + i) = localval(i);
}
}
}
}
@@ -1044,7 +1082,9 @@ void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
sdpt = (struct send_pt *)sendpt->ptr;
for (int index = 0; index < sendpt->n; index++)
{
int idx = sdpt->index + j*nptorig;
int idx = field_in.FESpace()->GetOrdering() == Ordering::byNODES ?
sdpt->index + j*nptorig :
sdpt->index*ncomp + j;
field_out(idx) = sdpt->ival;
++sdpt;
}
@@ -1139,7 +1179,8 @@ void OversetFindPointsGSLIB::Setup(Mesh &m, const int meshid,
}
void OversetFindPointsGSLIB::FindPoints(const Vector &point_pos,
Array<unsigned int> &point_id)
Array<unsigned int> &point_id,
int point_pos_ordering)
{
MFEM_VERIFY(setupflag, "Use OversetFindPointsGSLIB::Setup before "
"finding points.");
@@ -1153,14 +1194,24 @@ void OversetFindPointsGSLIB::FindPoints(const Vector &point_pos,
gsl_ref.SetSize(points_cnt * dim);
gsl_dist.SetSize(points_cnt);
const double *xv_base[dim];
unsigned xv_stride[dim];
for (int d = 0; d < dim; d++)
{
if (point_pos_ordering == Ordering::byNODES)
{
xv_base[d] = point_pos.GetData() + d*points_cnt;
xv_stride[d] = sizeof(double);
}
else
{
xv_base[d] = point_pos.GetData() + d;
xv_stride[d] = dim*sizeof(double);
}
}
if (dim == 2)
{
const double *xv_base[2];
xv_base[0] = point_pos.GetData();
xv_base[1] = point_pos.GetData() + points_cnt;
unsigned xv_stride[2];
xv_stride[0] = sizeof(double);
xv_stride[1] = sizeof(double);
findptsms_2(gsl_code.GetData(), sizeof(unsigned int),
gsl_proc.GetData(), sizeof(unsigned int),
gsl_elem.GetData(), sizeof(unsigned int),
@@ -1172,14 +1223,6 @@ void OversetFindPointsGSLIB::FindPoints(const Vector &point_pos,
}
else
{
const double *xv_base[3];
xv_base[0] = point_pos.GetData();
xv_base[1] = point_pos.GetData() + points_cnt;
xv_base[2] = point_pos.GetData() + 2*points_cnt;
unsigned xv_stride[3];
xv_stride[0] = sizeof(double);
xv_stride[1] = sizeof(double);
xv_stride[2] = sizeof(double);
findptsms_3(gsl_code.GetData(), sizeof(unsigned int),
gsl_proc.GetData(), sizeof(unsigned int),
gsl_elem.GetData(), sizeof(unsigned int),
@@ -1208,9 +1251,10 @@ void OversetFindPointsGSLIB::FindPoints(const Vector &point_pos,
void OversetFindPointsGSLIB::Interpolate(const Vector &point_pos,
Array<unsigned int> &point_id,
const GridFunction &field_in,
Vector &field_out)
Vector &field_out,
int point_pos_ordering)
{
FindPoints(point_pos, point_id);
FindPoints(point_pos, point_id, point_pos_ordering);
Interpolate(field_in, field_out);
}
+27 -13
View File
@@ -121,8 +121,9 @@ public:
void Setup(Mesh &m, const double bb_t = 0.1,
const double newt_tol = 1.0e-12,
const int npt_max = 256);
/** Searches positions given in physical space by @a point_pos. These positions
must by ordered by nodes: (XXX...,YYY...,ZZZ).
/** Searches positions given in physical space by @a point_pos.
These positions can be ordered byNodes: (XXX...,YYY...,ZZZ) or
byVDim: (XYZ,XYZ,....XYZ) specified by @a point_pos_ordering.
This function populates the following member variables:
#gsl_code Return codes for each point: inside element (0),
element boundary (1), not found (2).
@@ -140,9 +141,11 @@ public:
Defaults to 0 for points that were not found.
#gsl_dist Distance between the sought and the found point
in physical space. */
void FindPoints(const Vector &point_pos);
void FindPoints(const Vector &point_pos,
int point_pos_ordering = Ordering::byNODES);
/// Setup FindPoints and search positions
void FindPoints(Mesh &m, const Vector &point_pos,
int point_pos_ordering = Ordering::byNODES,
const double bb_t = 0.1,
const double newt_tol = 1.0e-12, const int npt_max = 256);
@@ -154,12 +157,18 @@ public:
@param[out] field_out Interpolated values. For points that are not found
the value is set to #default_interp_value. */
virtual void Interpolate(const GridFunction &field_in, Vector &field_out);
/** Search positions and interpolate */
/** Search positions and interpolate. The ordering (byNODES or byVDIM) of
the output values in @a field_out corresponds to the ordering used
in the input GridFunction @a field_in. */
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
Vector &field_out);
/** Setup FindPoints, search positions and interpolate */
Vector &field_out,
int point_pos_ordering = Ordering::byNODES);
/** Setup FindPoints, search positions and interpolate. The ordering (byNODES
or byVDIM) of the output values in @a field_out corresponds to the
ordering used in the input GridFunction @a field_in. */
void Interpolate(Mesh &m, const Vector &point_pos,
const GridFunction &field_in, Vector &field_out);
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering = Ordering::byNODES);
/// Average type to be used for L2 functions in-case a point is located at
/// an element boundary where the function might be multi-valued.
@@ -247,15 +256,20 @@ public:
/** Searches positions given in physical space by @a point_pos. All output
Arrays and Vectors are expected to have the correct size.
@param[in] point_pos Positions to be found. Must by ordered by nodes
(XXX...,YYY...,ZZZ).
@param[in] point_id Index of the mesh that the point belongs to
(corresponding to @a meshid in Setup). */
void FindPoints(const Vector &point_pos, Array<unsigned int> &point_id);
@param[in] point_pos Positions to be found.
@param[in] point_id Index of the mesh that the point belongs
to (corresponding to @a meshid in Setup).
@param[in] point_pos_ordering Ordering of the points:
byNodes: (XXX...,YYY...,ZZZ) or
byVDim: (XYZ,XYZ,....XYZ) */
void FindPoints(const Vector &point_pos,
Array<unsigned int> &point_id,
int point_pos_ordering = Ordering::byNODES);
/** Search positions and interpolate */
void Interpolate(const Vector &point_pos, Array<unsigned int> &point_id,
const GridFunction &field_in, Vector &field_out);
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering = Ordering::byNODES);
using FindPointsGSLIB::Interpolate;
};
-1
View File
@@ -827,7 +827,6 @@ void Hybridization::ReduceRHS(const Vector &b, Vector &b_r) const
}
else
{
Ct->EnsureMultTranspose();
Ct->MultTranspose(bf, bl);
}
b_r.SetSize(pH.Ptr()->Height());
+17 -9
View File
@@ -120,6 +120,22 @@ MFEM_HOST_DEVICE inline void LoadBGt(const int D1D, const int Q1D,
MFEM_SYNC_THREAD;
}
/// Load 2D input scalar into given DeviceMatrix
MFEM_HOST_DEVICE inline void LoadX(const int e, const int D1D,
const DeviceTensor<3, const double> &x,
DeviceMatrix &DD)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
DD(dx,dy) = x(dx,dy,e);
}
}
MFEM_SYNC_THREAD;
}
/// Load 2D input scalar into shared memory
template<int MD1, int NBZ>
MFEM_HOST_DEVICE inline void LoadX(const int e, const int D1D,
@@ -128,15 +144,7 @@ MFEM_HOST_DEVICE inline void LoadX(const int e, const int D1D,
{
const int tidz = MFEM_THREAD_ID(z);
DeviceMatrix X(sX[tidz], D1D, D1D);
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(dx,x,D1D)
{
X(dx,dy) = x(dx,dy,e);
}
}
MFEM_SYNC_THREAD;
LoadX(e, D1D, x, X);
}
/// Load 2D input scalar into shared memory, with comp
+51 -25
View File
@@ -19,12 +19,13 @@ namespace mfem
LinearForm::LinearForm(FiniteElementSpace *f, LinearForm *lf)
: Vector(f->GetVSize())
{
// Linear forms are stored on the device
UseDevice(true);
fes = f;
ext = nullptr;
extern_lfs = 1;
fast_assembly = false;
fes = f;
// Linear forms are stored on the device
UseDevice(true);
// Copy the pointers to the integrators
domain_integs = lf->domain_integs;
@@ -102,25 +103,45 @@ void LinearForm::AddInteriorFaceIntegrator(LinearFormIntegrator *lfi)
bool LinearForm::SupportsDevice()
{
// return false for NURBS meshs, so we dont convert it to non-NURBS
// return false for NURBS meshes, so we dont convert it to non-NURBS
// through Assemble, AssembleDevice, GetGeometricFactors and EnsureNodes
if (fes->GetMesh()->NURBSext != nullptr) { return false; }
const Mesh &mesh = *fes->GetMesh();
if (mesh.NURBSext != nullptr) { return false; }
// scan domain integrator to verify that all can use device assembly
if (domain_integs.Size() > 0)
// scan integrators to verify that all can use device assembly
auto IntegratorsSupportDevice = [](const Array<LinearFormIntegrator*> &integ)
{
for (int k = 0; k < domain_integs.Size(); k++)
for (int k = 0; k < integ.Size(); k++)
{
if (!domain_integs[k]->SupportsDevice()) { return false; }
if (!integ[k]->SupportsDevice()) { return false; }
}
return true;
};
if (!IntegratorsSupportDevice(domain_integs)) { return false; }
if (!IntegratorsSupportDevice(boundary_integs)) { return false; }
if (boundary_face_integs.Size() > 0 || interior_face_integs.Size() > 0 ||
domain_delta_integs.Size() > 0) { return false; }
if (boundary_integs.Size() > 0)
{
// Make sure there are no boundary faces that are not boundary elements
if (fes->GetNFbyType(FaceType::Boundary) != fes->GetNBE())
{
return false;
}
// Make sure every boundary element corresponds to a boundary face
for (int be = 0; be < fes->GetNBE(); ++be)
{
const int f = mesh.GetBdrElementEdgeIndex(be);
const auto face_info = mesh.GetFaceInformation(f);
if (!face_info.IsBoundary())
{
return false;
}
}
}
// boundary, delta and face integrators are not supported yet
if (GetBLFI()->Size() > 0 || GetFLFI()->Size() > 0 ||
GetDLFI_Delta()->Size() > 0 || GetIFLFI()->Size() > 0) { return false; }
const Mesh &mesh = *fes->GetMesh();
// no support for elements with varying polynomial orders
if (fes->IsVariableOrder()) { return false; }
@@ -134,25 +155,30 @@ bool LinearForm::SupportsDevice()
return true;
}
void LinearForm::Assemble(bool use_device)
void LinearForm::UseFastAssembly(bool use_fa)
{
fast_assembly = use_fa;
if (fast_assembly && SupportsDevice() && !ext)
{
ext = new LinearFormExtension(this);
}
}
void LinearForm::Assemble()
{
Array<int> vdofs;
ElementTransformation *eltrans;
DofTransformation *doftrans;
Vector elemvect;
if (!ext && use_device && SupportsDevice())
{
ext = new LinearFormExtension(this);
}
Vector::operator=(0.0);
// The above operation is executed on device because of UseDevice().
// The first use of AddElementVector() below will move it back to host
// because both 'vdofs' and 'elemvect' are on host.
if (ext) { return ext->Assemble(); }
if (fast_assembly && ext) { return ext->Assemble(); }
if (domain_integs.Size())
{
@@ -173,8 +199,8 @@ void LinearForm::Assemble(bool use_device)
int elem_attr = fes->GetMesh()->GetAttribute(i);
for (int k = 0; k < domain_integs.Size(); k++)
{
if ( domain_integs_marker[k] == NULL ||
(*(domain_integs_marker[k]))[elem_attr-1] == 1 )
const Array<int> * const markers = domain_integs_marker[k];
if ( markers == NULL || (*markers)[elem_attr-1] == 1 )
{
doftrans = fes -> GetElementVDofs (i, vdofs);
eltrans = fes -> GetElementTransformation (i);
+21 -9
View File
@@ -30,12 +30,16 @@ protected:
FiniteElementSpace *fes;
/** @brief Extension for supporting different assembly levels. */
LinearFormExtension *ext;
LinearFormExtension *ext = nullptr;
/// @brief Should we use the device-compatible fast assembly algorithm (false
/// by default)
bool fast_assembly = false;
/** @brief Indicates the LinearFormIntegrator%s stored in #domain_integs,
#domain_delta_integs, #boundary_integs, and #boundary_face_integs are
owned by another LinearForm. */
int extern_lfs;
int extern_lfs = 0;
/// Set of Domain Integrators to be applied.
Array<LinearFormIntegrator*> domain_integs;
@@ -82,7 +86,7 @@ public:
/// Creates linear form associated with FE space @a *f.
/** The pointer @a f is not owned by the newly constructed object. */
LinearForm(FiniteElementSpace *f) : Vector(f->GetVSize())
{ fes = f; ext = nullptr; extern_lfs = 0; UseDevice(true); }
{ fes = f; UseDevice(true); }
/** @brief Create a LinearForm on the FiniteElementSpace @a f, using the
same integrators as the LinearForm @a lf.
@@ -97,7 +101,8 @@ public:
/** The associated FiniteElementSpace can be set later using one of the
methods: Update(FiniteElementSpace *) or
Update(FiniteElementSpace *, Vector &, int). */
LinearForm() { fes = NULL; ext = nullptr; extern_lfs = 0; UseDevice(true); }
LinearForm()
{ fes = NULL; UseDevice(true); }
/// Construct a LinearForm using previously allocated array @a data.
/** The LinearForm does not assume ownership of @a data which is assumed to
@@ -105,7 +110,7 @@ public:
for externally allocated array, the pointer @a data can be NULL. The data
array can be replaced later using the method SetData(). */
LinearForm(FiniteElementSpace *f, double *data) : Vector(data, f->GetVSize())
{ fes = f; ext = nullptr; extern_lfs = 0; }
{ fes = f; }
/// Copy assignment. Only the data of the base class Vector is copied.
/** It is assumed that this object and @a rhs use FiniteElementSpace%s that
@@ -185,13 +190,20 @@ public:
corresponding pointer (to Array<int>) will be NULL. */
Array<Array<int>*> *GetFLFI_Marker() { return &boundary_face_integs_marker; }
/// @brief Which assembly algorithm to use: the new device-compatible fast
/// assembly (true), or the legacy CPU-only algorithm (false).
/** If not set, the default value is false. If used, this method must be
called before assembly. */
void UseFastAssembly(bool use_fa);
/// Assembles the linear form i.e. sums over all domain/bdr integrators.
/// When @a use_device is set to true and the linearform assembly is
/// compatible with device execution, it will be executed on the device.
void Assemble(bool use_device = true);
/** When @ref UseFastAssembly "UseFastAssembly(true)" has been called and the
linearform assembly is compatible with device execution, it will be
executed on the device. */
void Assemble();
/// Return true if assembly on device is supported, false otherwise.
bool SupportsDevice();
virtual bool SupportsDevice();
/// Assembles delta functions of the linear form
void AssembleDelta();
+97 -14
View File
@@ -25,7 +25,8 @@ void LinearFormExtension::Assemble()
"match the number of vector dofs!");
const Array<Array<int>*> &domain_integs_marker = *lf->GetDLFI_Marker();
const int mesh_attributes_size = fes.GetMesh()->attributes.Size();
const int mesh_attributes_max = fes.GetMesh()->attributes.Size() ?
fes.GetMesh()->attributes.Max() : 0;
const Array<LinearFormIntegrator*> &domain_integs = *lf->GetDLFI();
for (int k = 0; k < domain_integs.Size(); ++k)
@@ -39,7 +40,7 @@ void LinearFormExtension::Assemble()
if (has_markers_k)
{
// Element attribute marker should be of length mesh->attributes
MFEM_VERIFY(mesh_attributes_size == domain_integs_marker_k->Size(),
MFEM_VERIFY(mesh_attributes_max == domain_integs_marker_k->Size(),
"invalid element marker for domain linear form "
"integrator #" << k << ", counting from zero");
}
@@ -59,7 +60,47 @@ void LinearFormExtension::Assemble()
// Assemble the linear form
b = 0.0;
domain_integs[k]->AssembleDevice(fes, markers, b);
elem_restrict_lex->MultTranspose(b, *lf);
if (k == 0) { elem_restrict_lex->MultTranspose(b, *lf); }
else { elem_restrict_lex->AddMultTranspose(b, *lf); }
}
const Array<Array<int>*> &boundary_integs_marker = lf->boundary_integs_marker;
const int bdr_attributes_max = fes.GetMesh()->bdr_attributes.Size() ?
fes.GetMesh()->bdr_attributes.Max() : 0;
const Array<LinearFormIntegrator*> &boundary_integs = lf->boundary_integs;
for (int k = 0; k < boundary_integs.Size(); ++k)
{
// Get the markers for this integrator
const Array<int> *boundary_integs_marker_k = boundary_integs_marker[k];
// check if there are markers for this integrator
const bool has_markers_k = boundary_integs_marker_k != nullptr;
if (has_markers_k)
{
// Element attribute marker should be of length mesh->attributes
MFEM_VERIFY(bdr_attributes_max == boundary_integs_marker_k->Size(),
"invalid boundary marker for boundary linear form "
"integrator #" << k << ", counting from zero");
}
// if there are no markers, just use the whole linear form (1)
if (!has_markers_k) { bdr_markers.HostReadWrite(); bdr_markers = 1; }
else
{
// scan the attributes to set the markers to 0 or 1
const int NBE = bdr_attributes.Size();
const auto attr = bdr_attributes.Read();
const auto attr_markers = boundary_integs_marker_k->Read();
auto markers_w = bdr_markers.Write();
MFEM_FORALL(e, NBE, markers_w[e] = attr_markers[attr[e]-1] == 1;);
}
// Assemble the linear form
bdr_b = 0.0;
boundary_integs[k]->AssembleDevice(fes, bdr_markers, bdr_b);
bdr_restrict_lex->AddMultTranspose(bdr_b, *lf);
}
}
@@ -67,22 +108,64 @@ void LinearFormExtension::Update()
{
const FiniteElementSpace &fes = *lf->FESpace();
const Mesh &mesh = *fes.GetMesh();
const int NE = fes.GetNE();
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
MFEM_VERIFY(lf->Size() == fes.GetVSize(), "");
markers.SetSize(NE);
//markers.UseDevice(true);
if (lf->domain_integs.Size() > 0)
{
const int NE = fes.GetNE();
markers.SetSize(NE);
//markers.UseDevice(true);
// Gather the attributes on the host from all the elements
attributes.SetSize(NE);
for (int i = 0; i < NE; ++i) { attributes[i] = mesh.GetAttribute(i); }
// Gather the attributes on the host from all the elements
attributes.SetSize(NE);
for (int i = 0; i < NE; ++i) { attributes[i] = mesh.GetAttribute(i); }
constexpr ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
elem_restrict_lex = fes.GetElementRestriction(ordering);
MFEM_VERIFY(elem_restrict_lex, "Element restriction not available");
b.SetSize(elem_restrict_lex->Height(), Device::GetMemoryType());
b.UseDevice(true);
elem_restrict_lex = fes.GetElementRestriction(ordering);
MFEM_VERIFY(elem_restrict_lex, "Element restriction not available");
b.SetSize(elem_restrict_lex->Height(), Device::GetMemoryType());
b.UseDevice(true);
}
if (lf->boundary_integs.Size() > 0)
{
const int nf_bdr = fes.GetNFbyType(FaceType::Boundary);
bdr_markers.SetSize(nf_bdr);
// bdr_markers.UseDevice(true);
// The face restriction will give us "face E-vectors" on the boundary that
// are numbered in the order of the faces of mesh. This numbering will be
// different than the numbering of the boundary elements. We compute
// mappings so that the array `bdr_attributes[i]` gives the boundary
// attribute of the `i`th boundary face in the mesh face order.
std::unordered_map<int,int> f_to_be;
for (int i = 0; i < mesh.GetNBE(); ++i)
{
const int f = mesh.GetBdrElementEdgeIndex(i);
f_to_be[f] = i;
}
MFEM_VERIFY(size_t(nf_bdr) == f_to_be.size(), "Incompatible sizes");
bdr_attributes.SetSize(nf_bdr);
int f_ind = 0;
for (int f = 0; f < mesh.GetNumFaces(); ++f)
{
if (f_to_be.find(f) != f_to_be.end())
{
const int be = f_to_be[f];
bdr_attributes[f_ind] = mesh.GetBdrAttribute(be);
++f_ind;
}
}
bdr_restrict_lex =
dynamic_cast<const FaceRestriction*>(
fes.GetFaceRestriction(ordering, FaceType::Boundary,
L2FaceValues::SingleValued));
MFEM_VERIFY(bdr_restrict_lex, "Face restriction not available");
bdr_b.SetSize(bdr_restrict_lex->Height(), Device::GetMemoryType());
bdr_b.UseDevice(true);
}
}
} // namespace mfem
+7 -4
View File
@@ -25,19 +25,22 @@ class LinearForm;
class LinearFormExtension
{
/// Attributes of all mesh elements.
Array<int> attributes;
Array<int> attributes, bdr_attributes;
/// Temporary markers for device kernels.
Array<int> markers;
Array<int> markers, bdr_markers;
/// Linear form from which this extension depends. Not owned.
LinearForm *lf;
/// Operator that converts FiniteElementSpace L-vectors to E-vectors.
const Operator *elem_restrict_lex; // Not owned
const ElementRestrictionOperator *elem_restrict_lex; // Not owned
/// Operator that converts L-vectors to boundary E-vectors.
const FaceRestriction *bdr_restrict_lex; // Not owned
/// Internal E-vectors.
mutable Vector b;
mutable Vector b, bdr_b;
public:
+2 -2
View File
@@ -1046,7 +1046,7 @@ void VectorQuadratureLFIntegrator::AssembleRHSElementVect(
const FiniteElement &fe, ElementTransformation &Tr, Vector &elvect)
{
const IntegrationRule *ir =
&vqfc.GetQuadFunction().GetSpace()->GetElementIntRule(Tr.ElementNo);
&vqfc.GetQuadFunction().GetSpace()->GetIntRule(Tr.ElementNo);
const int nqp = ir->GetNPoints();
const int vdim = vqfc.GetVDim();
@@ -1078,7 +1078,7 @@ void QuadratureLFIntegrator::AssembleRHSElementVect(const FiniteElement &fe,
Vector &elvect)
{
const IntegrationRule *ir =
&qfc.GetQuadFunction().GetSpace()->GetElementIntRule(Tr.ElementNo);
&qfc.GetQuadFunction().GetSpace()->GetIntRule(Tr.ElementNo);
const int nqp = ir->GetNPoints();
const int ndofs = fe.GetDof();
+14
View File
@@ -187,6 +187,13 @@ public:
BoundaryLFIntegrator(Coefficient &QG, int a = 1, int b = 1)
: Q(QG), oa(a), ob(b) { }
virtual bool SupportsDevice() { return true; }
/// Method defining assembly on device
virtual void AssembleDevice(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b);
/** Given a particular boundary Finite Element and a transformation (Tr)
computes the element boundary vector, elvect. */
virtual void AssembleRHSElementVect(const FiniteElement &el,
@@ -210,6 +217,13 @@ public:
BoundaryNormalLFIntegrator(VectorCoefficient &QG, int a = 1, int b = 1)
: Q(QG), oa(a), ob(b) { }
virtual bool SupportsDevice() { return true; }
/// Method defining assembly on device
virtual void AssembleDevice(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b);
virtual void AssembleRHSElementVect(const FiniteElement &el,
ElementTransformation &Tr,
Vector &elvect);
+241
View File
@@ -0,0 +1,241 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
#include "../fem/kernels.hpp"
#include "../general/forall.hpp"
namespace mfem
{
template<int T_D1D = 0, int T_Q1D = 0> static
void BLFEvalAssemble2D(const int vdim, const int nbe, const int d, const int q,
const bool normals, const int *markers, const double *b,
const double *detj, const double *n, const double *weights,
const Vector &coeff, double *y)
{
const auto F = coeff.Read();
const auto M = Reshape(markers, nbe);
const auto B = Reshape(b, q, d);
const auto detJ = Reshape(detj, q, nbe);
const auto N = Reshape(n, q, 2, nbe);
const auto W = Reshape(weights, q);
const int cvdim = normals ? 2 : 1;
const bool cst = coeff.Size() == cvdim;
const auto C = cst ? Reshape(F,cvdim,1,1) : Reshape(F,cvdim,q,nbe);
auto Y = Reshape(y, d, vdim, nbe);
MFEM_FORALL(e, nbe,
{
if (M(e) == 0) { return; } // ignore
constexpr int Q = T_Q1D ? T_Q1D : MAX_Q1D;
double QQ[Q];
for (int c = 0; c < vdim; ++c)
{
for (int qx = 0; qx < q; ++qx)
{
double coeff_val = 0.0;
if (normals)
{
for (int cd = 0; cd < 2; ++cd)
{
const double cval = cst ? C(cd,0,0) : C(cd,qx,e);
coeff_val += cval * N(qx, cd, e);
}
}
else
{
coeff_val = cst ? C(0,0,0) : C(0,qx,e);
}
QQ[qx] = W(qx) * coeff_val * detJ(qx,e);
}
for (int dx = 0; dx < d; ++dx)
{
double u = 0;
for (int qx = 0; qx < q; ++qx) { u += QQ[qx] * B(qx,dx); }
Y(dx,c,e) += u;
}
}
});
}
template<int T_D1D = 0, int T_Q1D = 0> static
void BLFEvalAssemble3D(const int vdim, const int nbe, const int d, const int q,
const bool normals, const int *markers, const double *b,
const double *detj, const double *n, const double *weights,
const Vector &coeff, double *y)
{
const auto F = coeff.Read();
const auto M = Reshape(markers, nbe);
const auto B = Reshape(b, q, d);
const auto detJ = Reshape(detj, q, q, nbe);
const auto N = Reshape(n, q, q, 3, nbe);
const auto W = Reshape(weights, q, q);
const int cvdim = normals ? 3 : 1;
const bool cst = coeff.Size() == cvdim;
const auto C = cst ? Reshape(F,cvdim,1,1,1) : Reshape(F,cvdim,q,q,nbe);
auto Y = Reshape(y, d, d, vdim, nbe);
MFEM_FORALL_2D(e, nbe, q, q, 1,
{
if (M(e) == 0) { return; } // ignore
constexpr int Q = T_Q1D ? T_Q1D : MAX_Q1D;
constexpr int D = T_D1D ? T_D1D : MAX_D1D;
MFEM_SHARED double sBt[Q*D];
MFEM_SHARED double sQQ[Q*Q];
MFEM_SHARED double sQD[Q*D];
const DeviceMatrix Bt(sBt, d, q);
kernels::internal::LoadB<D,Q>(d, q, B, sBt);
const DeviceMatrix QQ(sQQ, q, q);
const DeviceMatrix QD(sQD, q, d);
for (int c = 0; c < vdim; ++c)
{
MFEM_FOREACH_THREAD(x,x,q)
{
MFEM_FOREACH_THREAD(y,y,q)
{
double coeff_val = 0.0;
if (normals)
{
for (int cd = 0; cd < 3; ++cd)
{
double cval = cst ? C(cd,0,0,0) : C(cd,x,y,e);
coeff_val += cval * N(x,y,cd,e);
}
}
else
{
coeff_val = cst ? C(0,0,0,0) : C(0,x,y,e);
}
QQ(y,x) = W(x,y) * coeff_val * detJ(x,y,e);
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(qy,y,q)
{
MFEM_FOREACH_THREAD(dx,x,d)
{
double u = 0.0;
for (int qx = 0; qx < q; ++qx) { u += QQ(qy,qx) * Bt(dx,qx); }
QD(qy,dx) = u;
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(dy,y,d)
{
MFEM_FOREACH_THREAD(dx,x,d)
{
double u = 0.0;
for (int qy = 0; qy < q; ++qy) { u += QD(qy,dx) * Bt(dy,qy); }
Y(dx,dy,c,e) += u;
}
}
MFEM_SYNC_THREAD;
}
});
}
static void BLFEvalAssemble(const FiniteElementSpace &fes,
const IntegrationRule &ir,
const Array<int> &markers,
const Vector &coeff,
const bool normals,
Vector &y)
{
Mesh &mesh = *fes.GetMesh();
const int dim = mesh.Dimension();
const FiniteElement &el = *fes.GetBE(0);
const MemoryType mt = Device::GetDeviceMemoryType();
const DofToQuad &maps = el.GetDofToQuad(ir, DofToQuad::TENSOR);
const int d = maps.ndof, q = maps.nqpt;
int flags = FaceGeometricFactors::DETERMINANTS;
if (normals) { flags |= FaceGeometricFactors::NORMALS; }
const FaceGeometricFactors *geom = mesh.GetFaceGeometricFactors(
ir, flags, FaceType::Boundary, mt);
auto ker = (dim == 2) ? BLFEvalAssemble2D<> : BLFEvalAssemble3D<>;
if (dim==2)
{
if (d==1 && q==1) { ker=BLFEvalAssemble2D<1,1>; }
if (d==2 && q==2) { ker=BLFEvalAssemble2D<2,2>; }
if (d==3 && q==3) { ker=BLFEvalAssemble2D<3,3>; }
if (d==4 && q==4) { ker=BLFEvalAssemble2D<4,4>; }
if (d==5 && q==5) { ker=BLFEvalAssemble2D<5,5>; }
if (d==2 && q==3) { ker=BLFEvalAssemble2D<2,3>; }
if (d==3 && q==4) { ker=BLFEvalAssemble2D<3,4>; }
if (d==4 && q==5) { ker=BLFEvalAssemble2D<4,5>; }
if (d==5 && q==6) { ker=BLFEvalAssemble2D<5,6>; }
}
if (dim==3)
{
if (d==1 && q==1) { ker=BLFEvalAssemble3D<1,1>; }
if (d==2 && q==2) { ker=BLFEvalAssemble3D<2,2>; }
if (d==3 && q==3) { ker=BLFEvalAssemble3D<3,3>; }
if (d==4 && q==4) { ker=BLFEvalAssemble3D<4,4>; }
if (d==5 && q==5) { ker=BLFEvalAssemble3D<5,5>; }
if (d==2 && q==3) { ker=BLFEvalAssemble3D<2,3>; }
if (d==3 && q==4) { ker=BLFEvalAssemble3D<3,4>; }
if (d==4 && q==5) { ker=BLFEvalAssemble3D<4,5>; }
if (d==5 && q==6) { ker=BLFEvalAssemble3D<5,6>; }
}
MFEM_VERIFY(ker, "No kernel ndof " << d << " nqpt " << q);
const int vdim = fes.GetVDim();
const int nbe = fes.GetMesh()->GetNFbyType(FaceType::Boundary);
const int *M = markers.Read();
const double *B = maps.B.Read();
const double *detJ = geom->detJ.Read();
const double *n = geom->normal.Read();
const double *W = ir.GetWeights().Read();
double *Y = y.ReadWrite();
ker(vdim, nbe, d, q, normals, M, B, detJ, n, W, coeff, Y);
}
void BoundaryLFIntegrator::AssembleDevice(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b)
{
const FiniteElement &fe = *fes.GetBE(0);
const int qorder = oa * fe.GetOrder() + ob;
const Geometry::Type gtype = fe.GetGeomType();
const IntegrationRule &ir = IntRule ? *IntRule : IntRules.Get(gtype, qorder);
Mesh &mesh = *fes.GetMesh();
FaceQuadratureSpace qs(mesh, ir, FaceType::Boundary);
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
BLFEvalAssemble(fes, ir, markers, coeff, false, b);
}
void BoundaryNormalLFIntegrator::AssembleDevice(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b)
{
const FiniteElement &fe = *fes.GetBE(0);
const int qorder = oa * fe.GetOrder() + ob;
const Geometry::Type gtype = fe.GetGeomType();
const IntegrationRule &ir = IntRule ? *IntRule : IntRules.Get(gtype, qorder);
Mesh &mesh = *fes.GetMesh();
FaceQuadratureSpace qs(mesh, ir, FaceType::Boundary);
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
BLFEvalAssemble(fes, ir, markers, coeff, true, b);
}
} // namespace mfem
+14 -112
View File
@@ -19,13 +19,13 @@ namespace mfem
template<int T_D1D = 0, int T_Q1D = 0> static
void DLFEvalAssemble2D(const int vdim, const int ne, const int d, const int q,
const int map_type, const int *markers, const double *b,
const double *j, const double *weights,
const double *detj, const double *weights,
const Vector &coeff, double *y)
{
const auto F = coeff.Read();
const auto M = Reshape(markers, ne);
const auto B = Reshape(b, q, d);
const auto J = Reshape(j, q, q, 2,2, ne);
const auto DETJ = Reshape(detj, q, q, ne);
const auto W = Reshape(weights, q, q);
const bool cst = coeff.Size() == vdim;
const auto C = cst ? Reshape(F,vdim,1,1,1) : Reshape(F,vdim,q,q,ne);
@@ -55,19 +55,7 @@ void DLFEvalAssemble2D(const int vdim, const int ne, const int d, const int q,
{
MFEM_FOREACH_THREAD(y,y,q)
{
double detJ;
if (map_type == FiniteElement::VALUE)
{
const double J11 = J(x,y,0,0,e);
const double J21 = J(x,y,1,0,e);
const double J12 = J(x,y,0,1,e);
const double J22 = J(x,y,1,1,e);
detJ = J11 * J22 - J21 * J12;
}
else
{
detJ = 1.0;
}
const double detJ = (map_type == FiniteElement::VALUE) ? DETJ(x,y,e) : 1.0;
const double coeff_val = cst ? cst_val : C(c,x,y,e);
QQ(y,x) = W(x,y) * coeff_val * detJ;
}
@@ -100,13 +88,13 @@ void DLFEvalAssemble2D(const int vdim, const int ne, const int d, const int q,
template<int T_D1D = 0, int T_Q1D = 0> static
void DLFEvalAssemble3D(const int vdim, const int ne, const int d, const int q,
const int map_type, const int *markers, const double *b,
const double *j, const double *weights,
const double *detj, const double *weights,
const Vector &coeff, double *y)
{
const auto F = coeff.Read();
const auto M = Reshape(markers, ne);
const auto B = Reshape(b, q,d);
const auto J = Reshape(j, q,q,q, 3,3, ne);
const auto DETJ = Reshape(detj, q, q, q, ne);
const auto W = Reshape(weights, q,q,q);
const bool cst_coeff = coeff.Size() == vdim;
const auto C = cst_coeff ? Reshape(F,vdim,1,1,1,1):Reshape(F,vdim,q,q,q,ne);
@@ -138,26 +126,7 @@ void DLFEvalAssemble3D(const int vdim, const int ne, const int d, const int q,
{
for (int z = 0; z < q; ++z)
{
double detJ;
if (map_type == FiniteElement::VALUE)
{
const double J11 = J(x,y,z,0,0,e);
const double J21 = J(x,y,z,1,0,e);
const double J31 = J(x,y,z,2,0,e);
const double J12 = J(x,y,z,0,1,e);
const double J22 = J(x,y,z,1,1,e);
const double J32 = J(x,y,z,2,1,e);
const double J13 = J(x,y,z,0,2,e);
const double J23 = J(x,y,z,1,2,e);
const double J33 = J(x,y,z,2,2,e);
detJ = J11 * (J22 * J33 - J32 * J23) -
/* */ J21 * (J12 * J33 - J32 * J13) +
/* */ J31 * (J12 * J23 - J22 * J13);
}
else
{
detJ = 1.0;
}
const double detJ = (map_type == FiniteElement::VALUE) ? DETJ(x,y,z,e) : 1.0;
const double coeff_val = cst_coeff ? cst_val : C(c,x,y,z,e);
QQQ(z,y,x) = W(x,y,z) * coeff_val * detJ;
}
@@ -222,7 +191,7 @@ static void DLFEvalAssemble(const FiniteElementSpace &fes,
const MemoryType mt = Device::GetDeviceMemoryType();
const DofToQuad &maps = el.GetDofToQuad(*ir, DofToQuad::TENSOR);
const int d = maps.ndof, q = maps.nqpt;
constexpr int flags = GeometricFactors::JACOBIANS;
constexpr int flags = GeometricFactors::DETERMINANTS;
const GeometricFactors *geom = mesh->GetGeometricFactors(*ir, flags, mt);
const int map_type = fes.GetFE(0)->GetMapType();
decltype(&DLFEvalAssemble2D<>) ker =
@@ -260,10 +229,10 @@ static void DLFEvalAssemble(const FiniteElementSpace &fes,
const int ne = fes.GetMesh()->GetNE();
const int *M = markers.Read();
const double *B = maps.B.Read();
const double *J = geom->J.Read();
const double *detJ = geom->detJ.Read();
const double *W = ir->GetWeights().Read();
double *Y = y.ReadWrite();
ker(vdim, ne, d, q, map_type, M, B, J, W, coeff, Y);
ker(vdim, ne, d, q, map_type, M, B, detJ, W, coeff, Y);
}
void DomainLFIntegrator::AssembleDevice(const FiniteElementSpace &fes,
@@ -274,42 +243,9 @@ void DomainLFIntegrator::AssembleDevice(const FiniteElementSpace &fes,
const int qorder = oa * fe.GetOrder() + ob;
const Geometry::Type gtype = fe.GetGeomType();
const IntegrationRule *ir = IntRule ? IntRule : &IntRules.Get(gtype, qorder);
const int nq = ir->GetNPoints(), ne = fes.GetMesh()->GetNE();
Vector coeff;
if (ConstantCoefficient *cQ =
dynamic_cast<ConstantCoefficient*>(&Q))
{
coeff.SetSize(1);
coeff(0) = cQ->constant;
}
else if (QuadratureFunctionCoefficient *qfQ =
dynamic_cast<QuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qfun = qfQ->GetQuadFunction();
MFEM_VERIFY(qfun.Size() == fes.GetVDim()*ne*nq,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qfun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different.\n");
qfun.Read();
coeff.MakeRef(const_cast<QuadratureFunction&>(qfun),0);
}
else
{
coeff.SetSize(nq * ne);
auto C = Reshape(coeff.HostWrite(), nq, ne);
for (int e = 0; e < ne; ++e)
{
ElementTransformation& Tr = *fes.GetElementTransformation(e);
for (int q = 0; q < nq; ++q)
{
const IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
C(q,e) = Q.Eval(Tr, ip);
}
}
}
QuadratureSpace qs(*fes.GetMesh(), *ir);
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
DLFEvalAssemble(fes, ir, markers, coeff, b);
}
@@ -317,48 +253,14 @@ void VectorDomainLFIntegrator::AssembleDevice(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b)
{
const int vdim = fes.GetVDim();
const FiniteElement &fe = *fes.GetFE(0);
const int qorder = 2 * fe.GetOrder();
const Geometry::Type gtype = fe.GetGeomType();
const IntegrationRule *ir = IntRule ? IntRule : &IntRules.Get(gtype, qorder);
const int nq = ir->GetNPoints(), ne = fes.GetMesh()->GetNE();
if (VectorConstantCoefficient *vcQ =
dynamic_cast<VectorConstantCoefficient*>(&Q))
{
Qvec = vcQ->GetVec();
}
else if (VectorQuadratureFunctionCoefficient *vQ =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qfun = vQ->GetQuadFunction();
MFEM_VERIFY(qfun.Size() == vdim*ne*nq,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qfun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different.\n");
qfun.Read();
Qvec.MakeRef(const_cast<QuadratureFunction&>(qfun),0);
}
else
{
Vector qv(vdim);
Qvec.SetSize(vdim * nq * ne);
auto C = Reshape(Qvec.HostWrite(), vdim, nq, ne);
for (int e = 0; e < ne; ++e)
{
ElementTransformation& Tr = *fes.GetElementTransformation(e);
for (int q = 0; q < nq; ++q)
{
const IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
Q.Eval(qv, Tr, ip);
for (int c=0; c<vdim; ++c) { C(c,q,e) = qv[c]; }
}
}
}
DLFEvalAssemble(fes, ir, markers, Qvec, b);
QuadratureSpace qs(*fes.GetMesh(), *ir);
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
DLFEvalAssemble(fes, ir, markers, coeff, b);
}
} // namespace mfem
+6 -90
View File
@@ -324,108 +324,24 @@ void DomainLFGradIntegrator::AssembleDevice(const FiniteElementSpace &fes,
const int qorder = 2 * fe.GetOrder();
const Geometry::Type gtype = fe.GetGeomType();
const IntegrationRule *ir = IntRule ? IntRule : &IntRules.Get(gtype, qorder);
const int nq = ir->GetNPoints(), ne = fes.GetMesh()->GetNE();
if (VectorConstantCoefficient *vcQ =
dynamic_cast<VectorConstantCoefficient*>(&Q))
{
Qvec = vcQ->GetVec();
}
else if (VectorQuadratureFunctionCoefficient *vqfQ =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qfun = vqfQ->GetQuadFunction();
MFEM_VERIFY(qfun.Size() == ne*nq,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qfun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different.\n");
qfun.Read();
Qvec.MakeRef(const_cast<QuadratureFunction&>(qfun),0);
}
else
{
const int qvdim = Q.GetVDim();
Vector qvec(qvdim);
Qvec.SetSize(qvdim * nq * ne);
auto C = Reshape(Qvec.HostWrite(), qvdim, nq, ne);
for (int e = 0; e < ne; ++e)
{
ElementTransformation& Tr = *fes.GetElementTransformation(e);
for (int q = 0; q < nq; ++q)
{
const IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
Q.Eval(qvec, Tr, ip);
for (int c=0; c < qvdim; ++c)
{
C(c,q,e) = qvec[c];
}
}
}
}
DLFGradAssemble(fes, ir, markers, Qvec, b);
QuadratureSpace qs(*fes.GetMesh(), *ir);
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
DLFGradAssemble(fes, ir, markers, coeff, b);
}
void VectorDomainLFGradIntegrator::AssembleDevice(const FiniteElementSpace &fes,
const Array<int> &markers,
Vector &b)
{
const int vdim = fes.GetVDim();
const FiniteElement &fe = *fes.GetFE(0);
const int qorder = 2 * fe.GetOrder();
const Geometry::Type gtype = fe.GetGeomType();
const IntegrationRule *ir = IntRule ? IntRule : &IntRules.Get(gtype, qorder);
const int nq = ir->GetNPoints(), ne = fes.GetMesh()->GetNE(),
ns = fes.GetMesh()->SpaceDimension();
if (VectorConstantCoefficient *vcQ =
dynamic_cast<VectorConstantCoefficient*>(&Q))
{
Qvec = vcQ->GetVec();
}
else if (QuadratureFunctionCoefficient *qfQ =
dynamic_cast<QuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qfun = qfQ->GetQuadFunction();
MFEM_VERIFY(qfun.Size() == ne*nq,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qfun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different.\n");
qfun.Read();
Qvec.MakeRef(const_cast<QuadratureFunction&>(qfun),0);
}
else if (VectorQuadratureFunctionCoefficient* vqfQ =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(&Q))
{
const QuadratureFunction &qFun = vqfQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == vdim * ns * nq * ne,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
qFun.Read();
Qvec.MakeRef(const_cast<QuadratureFunction &>(qFun),0);
}
else
{
Vector qvec(vdim);
Qvec.SetSize(vdim * nq * ne);
auto C = Reshape(Qvec.HostWrite(), vdim, nq, ne);
for (int e = 0; e < ne; ++e)
{
ElementTransformation &Tr = *fes.GetElementTransformation(e);
for (int q = 0; q < nq; ++q)
{
const IntegrationPoint &ip = ir->IntPoint(q);
Tr.SetIntPoint(&ip);
Q.Eval(qvec, Tr, ip);
for (int c = 0; c<vdim; ++c) { C(c,q,e) = qvec[c]; }
}
}
}
DLFGradAssemble(fes, ir, markers, Qvec, b);
QuadratureSpace qs(*fes.GetMesh(), *ir);
CoefficientVector coeff(Q, qs, CoefficientStorage::COMPRESSED);
DLFGradAssemble(fes, ir, markers, coeff, b);
}
} // namespace mfem
+11 -5
View File
@@ -365,8 +365,11 @@ FiniteElementSpace &LORBase::GetFESpace() const
void LORBase::AssembleSystem(BilinearForm &a_ho, const Array<int> &ess_dofs)
{
A.Clear();
delete a;
if (a)
{
A.Clear();
delete a;
}
if (BatchedLORAssembly::FormIsSupported(a_ho))
{
// Skip forming the space
@@ -467,7 +470,9 @@ void LORDiscretization::FormLORSpace()
mesh = new Mesh(Mesh::MakeRefined(mesh_ho, refinements, ref_type));
fec = fes_ho.FEColl()->Clone(GetLOROrder());
fes = new FiniteElementSpace(mesh, fec);
const int vdim = fes_ho.GetVDim();
const Ordering::Type ordering = fes_ho.GetOrdering();
fes = new FiniteElementSpace(mesh, fec, vdim, ordering);
SetupProlongationAndRestriction();
}
@@ -511,8 +516,9 @@ void ParLORDiscretization::FormLORSpace()
mesh = pmesh;
fec = pfes_ho.FEColl()->Clone(GetLOROrder());
ParFiniteElementSpace *pfes = new ParFiniteElementSpace(pmesh, fec);
fes = pfes;
const int vdim = fes_ho.GetVDim();
const Ordering::Type ordering = fes_ho.GetOrdering();
fes = new ParFiniteElementSpace(pmesh, fec, vdim, ordering);
SetupProlongationAndRestriction();
}
+1 -1
View File
@@ -95,7 +95,7 @@ protected:
/// Returns the order of the LOR space. 1 for H1 or ND, 0 for L2 or RT.
int GetLOROrder() const;
/// Construct the LOR space (overriden for serial and parallel versions).
/// Construct the LOR space (overridden for serial and parallel versions).
virtual void FormLORSpace() = 0;
/// Construct the LORBase object for the given FE space and refinement type.
+17 -6
View File
@@ -13,6 +13,9 @@
#include "../../general/forall.hpp"
#include "../../fem/pbilinearform.hpp"
#define MFEM_NVTX_COLOR DeepSkyBlue
#include "../../general/nvtx.hpp"
namespace mfem
{
@@ -78,8 +81,10 @@ void BatchedLOR_ADS::Form3DFaceToEdge(Array<int> &face2edge)
}
}
void BatchedLOR_ADS::FormCurlMatrix()
void BatchedLOR_ADS::FormCurlMatrixLocal()
{
NVTX("Discrete Curl");
// The curl matrix maps from LOR edges to LOR faces. Given a quadrilateral
// face (defined by its four edges) f_i = (e_j1, e_j2, e_j3, e_j4), the
// matrix has nonzeros A(i, jk), so there are always exactly four nonzeros
@@ -87,10 +92,9 @@ void BatchedLOR_ADS::FormCurlMatrix()
const int nface_dof = face_fes.GetNDofs();
const int nedge_dof = edge_fes.GetNDofs();
SparseMatrix C_local;
C_local.OverrideSize(nface_dof, nedge_dof);
C_local.GetMemoryI().New(nedge_dof+1, Device::GetDeviceMemoryType());
EnsureCapacity(C_local.GetMemoryI(), nedge_dof+1,
Device::GetDeviceMemoryType());
// Each row always has four nonzeros
const int nnz = 4*nedge_dof;
auto I = C_local.WriteI();
@@ -120,8 +124,8 @@ void BatchedLOR_ADS::FormCurlMatrix()
const auto f2e = Reshape(face2edge.Read(), 4, nface_per_el);
// Fill J and data
C_local.GetMemoryJ().New(nnz, Device::GetDeviceMemoryType());
C_local.GetMemoryData().New(nnz, Device::GetDeviceMemoryType());
EnsureCapacity(C_local.GetMemoryJ(), nnz, Device::GetDeviceMemoryType());
EnsureCapacity(C_local.GetMemoryData(), nnz, Device::GetDeviceMemoryType());
auto J = C_local.WriteJ();
auto V = C_local.WriteData();
@@ -146,6 +150,11 @@ void BatchedLOR_ADS::FormCurlMatrix()
V[i*4 + k] = sgn*sgn_f*sgn_e;
}
});
}
void BatchedLOR_ADS::FormCurlMatrix()
{
FormCurlMatrixLocal();
// Create a block diagonal parallel matrix
OperatorHandle C_diag(Operator::Hypre_ParCSR);
@@ -179,6 +188,8 @@ void BatchedLOR_ADS::FormCurlMatrix()
}
C->CopyRowStarts();
C->CopyColStarts();
C_local.Clear();
}
HypreParMatrix *BatchedLOR_ADS::StealCurlMatrix()
+6 -1
View File
@@ -36,7 +36,9 @@ protected:
ND_FECollection edge_fec; ///< The associated Nedelec collection.
ParFiniteElementSpace edge_fes; ///< The associated Nedelec space.
BatchedLOR_AMS ams; ///< The associated AMS object.
HypreParMatrix *C; ///< The discrete curl matrix.
HypreParMatrix *C = nullptr; ///< The discrete curl matrix.
SparseMatrix C_local;
/// Form the local elementwise discrete curl matrix.
void Form3DFaceToEdge(Array<int> &face2edge);
@@ -64,6 +66,9 @@ public:
/// Form the discrete curl matrix (not part of the public API).
void FormCurlMatrix();
void FormCurlMatrixLocal();
~BatchedLOR_ADS();
};

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