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|
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|
|
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|
|
ff8d8752c7 | ||
|
|
e3cfc28718 |
@@ -25,7 +25,7 @@ runs:
|
||||
steps:
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
|
||||
- uses: actions/cache@v4
|
||||
- uses: actions/cache@v5
|
||||
if: ${{env.DEBUG == 'true'}}
|
||||
id: debug
|
||||
with:
|
||||
|
||||
@@ -36,7 +36,7 @@ runs:
|
||||
steps:
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
|
||||
- uses: actions/cache@v4
|
||||
- uses: actions/cache@v5
|
||||
if: ${{env.DEBUG == 'true' && inputs.cache-skip != 'true'}}
|
||||
id: debug
|
||||
with:
|
||||
|
||||
@@ -23,7 +23,7 @@ inputs:
|
||||
runs:
|
||||
using: 'composite'
|
||||
steps:
|
||||
- uses: actions/cache/restore@v4 # Cache for LLVM libcxx
|
||||
- uses: actions/cache/restore@v5 # Cache for LLVM libcxx
|
||||
with:
|
||||
path: ${{env.LLVM_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
@@ -32,14 +32,14 @@ runs:
|
||||
- uses: ./.github/actions/sanitize/mpi
|
||||
if: ${{inputs.par == 'true'}}
|
||||
|
||||
- uses: actions/cache/restore@v4 # Cache for Hypre
|
||||
- uses: actions/cache/restore@v5 # Cache for Hypre
|
||||
if: ${{inputs.par == 'true'}}
|
||||
with:
|
||||
path: ${{env.HYPRE_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
|
||||
|
||||
- uses: actions/cache/restore@v4 # Cache for Metis
|
||||
- uses: actions/cache/restore@v5 # Cache for Metis
|
||||
if: ${{inputs.par == 'true'}}
|
||||
with:
|
||||
path: ${{env.METIS_DIR}}
|
||||
@@ -51,13 +51,13 @@ runs:
|
||||
run: ln -s -f ${{env.HYPRE_DIR}} hypre && ln -s -f ${{env.METIS_DIR}} metis-4.0
|
||||
shell: bash
|
||||
|
||||
- uses: actions/cache/restore@v4 # Cache for LSAN suppression file
|
||||
- uses: actions/cache/restore@v5 # Cache for LSAN suppression file
|
||||
with:
|
||||
path: ${{env.LSAN_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
key: build-lsan-suppression-file
|
||||
|
||||
- uses: actions/checkout@v4 # Checkout the repository
|
||||
- uses: actions/checkout@v6 # Checkout the repository
|
||||
with:
|
||||
path: mfem
|
||||
# ref: ${{env.BRANCH}}
|
||||
|
||||
@@ -43,7 +43,7 @@ jobs:
|
||||
remove-docker-images: 'true'
|
||||
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
# It's easier to reference named variables than indexes of the matrix
|
||||
- name: Set Environment
|
||||
|
||||
@@ -153,7 +153,7 @@ jobs:
|
||||
# /home/runner/work/mfem/mfem/mfem
|
||||
# Note: Done now to access "install-hypre" and "install-metis" actions.
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
with:
|
||||
path: ${{ env.MFEM_TOP_DIR }}
|
||||
# Fetch the complete history for codecov to access commits ID
|
||||
@@ -225,7 +225,7 @@ jobs:
|
||||
- name: cache hypre
|
||||
id: hypre-cache
|
||||
if: matrix.mpi == 'par'
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-v2.5
|
||||
@@ -255,7 +255,7 @@ jobs:
|
||||
- name: cache metis
|
||||
id: metis-cache
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
|
||||
@@ -270,7 +270,7 @@ jobs:
|
||||
- name: cache vcpkg (Windows)
|
||||
id: vcpkg-cache
|
||||
if: matrix.os == 'windows-latest'
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: vcpkg_cache
|
||||
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
|
||||
@@ -295,7 +295,8 @@ jobs:
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew update
|
||||
brew install enzyme
|
||||
ENZYME_LLVM=$(brew info enzyme | sed -n 's/^Required:.*\(llvm[^ ]*\).*/\1/p')
|
||||
ENZYME_LLVM=$(brew info enzyme | sed -n 's/^Required.*:.*\(llvm[^ ]*\).*/\1/p')
|
||||
echo "ENZYME_LLVM=$ENZYME_LLVM"
|
||||
LLVM_PREFIX=$(brew --prefix $ENZYME_LLVM)
|
||||
echo "LLVM_PREFIX=$LLVM_PREFIX" >> $GITHUB_ENV
|
||||
echo "OMPI_CC=$LLVM_PREFIX/bin/clang" >> $GITHUB_ENV
|
||||
|
||||
@@ -40,11 +40,11 @@ jobs:
|
||||
|
||||
steps:
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
# Initializes the CodeQL tools for scanning.
|
||||
- name: Initialize CodeQL
|
||||
uses: github/codeql-action/init@v2
|
||||
uses: github/codeql-action/init@v4
|
||||
with:
|
||||
languages: ${{ matrix.language }}
|
||||
# If you wish to specify custom queries, you can do so here or in a config file.
|
||||
@@ -57,7 +57,7 @@ jobs:
|
||||
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
|
||||
# If this step fails, then you should remove it and run the build manually (see below)
|
||||
- name: Autobuild
|
||||
uses: github/codeql-action/autobuild@v2
|
||||
uses: github/codeql-action/autobuild@v4
|
||||
|
||||
# ℹ️ Command-line programs to run using the OS shell.
|
||||
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
|
||||
@@ -70,4 +70,4 @@ jobs:
|
||||
# ./location_of_script_within_repo/buildscript.sh
|
||||
|
||||
- name: Perform CodeQL Analysis
|
||||
uses: github/codeql-action/analyze@v2
|
||||
uses: github/codeql-action/analyze@v4
|
||||
|
||||
@@ -39,7 +39,7 @@ jobs:
|
||||
|
||||
steps:
|
||||
- name: checkout MFEM
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
@@ -50,7 +50,7 @@ jobs:
|
||||
|
||||
- name: Cache Hypre Install
|
||||
id: hypre-cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-v2.5
|
||||
@@ -65,7 +65,7 @@ jobs:
|
||||
|
||||
- name: Cache Metis Install
|
||||
id: metis-cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
|
||||
|
||||
@@ -38,7 +38,7 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
- name: copyright check
|
||||
id: copyright
|
||||
@@ -93,7 +93,7 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
- name: get astyle
|
||||
run: |
|
||||
@@ -110,7 +110,7 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
- name: get doxygen and graphviz
|
||||
run: |
|
||||
@@ -135,7 +135,7 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
|
||||
@@ -17,11 +17,11 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
name: 2.19.0
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{env.HYPRE_DIR}}
|
||||
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
|
||||
|
||||
@@ -27,13 +27,13 @@ jobs:
|
||||
llvm_use_sanitizer: "Undefined"
|
||||
name: ${{matrix.sanitizer}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
with:
|
||||
NO_FLAGS: true
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{env.LLVM_DIR}}
|
||||
key: build-libcxx-${{env.LLVM_VER}}-${{matrix.sanitizer}}
|
||||
|
||||
@@ -17,11 +17,11 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
name: lsan.supp
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{env.LSAN_DIR}}
|
||||
key: build-lsan-suppression-file
|
||||
|
||||
@@ -17,11 +17,11 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
name: 4.0.3
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{env.METIS_DIR}}
|
||||
key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
|
||||
|
||||
@@ -28,7 +28,7 @@ jobs:
|
||||
build:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/mfem
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
@@ -40,7 +40,7 @@ jobs:
|
||||
env:
|
||||
ex: ${{inputs.par && 'ex1p' || 'ex1'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -58,7 +58,7 @@ jobs:
|
||||
env:
|
||||
exclude: ${{inputs.par && '-E "_ser"' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -82,7 +82,7 @@ jobs:
|
||||
env:
|
||||
exclude: ${{inputs.par && '-E "_ser"' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -107,7 +107,7 @@ jobs:
|
||||
run: ${{inputs.par && '-R "_cpu_np"' || ''}}
|
||||
exclude: ${{inputs.par && '"unit_tests|debug"' || '"^unit_tests$|debug"'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -131,7 +131,7 @@ jobs:
|
||||
env:
|
||||
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -165,7 +165,7 @@ jobs:
|
||||
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
|
||||
np: ${{inputs.par && '_np=2' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
|
||||
@@ -443,6 +443,10 @@ miniapps/diag-smoothers/mg-abs-l1-jacobi
|
||||
miniapps/contact/contact
|
||||
miniapps/contact/ParaView
|
||||
|
||||
miniapps/plasma/pic/electrostatic-*
|
||||
!miniapps/plasma/pic/electrostatic-*.cpp
|
||||
miniapps/plasma/pic/*.csv
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
|
||||
@@ -85,3 +85,8 @@ opt_par_gcc_10_pumi:
|
||||
extends: .mfem_job_on_dane
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +pumi"
|
||||
|
||||
opt_par_gcc_10_gslib:
|
||||
extends: .mfem_job_on_dane
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +gslib"
|
||||
|
||||
@@ -63,3 +63,8 @@ opt_mpi_cuda_hypre_cuda_gcc:
|
||||
extends: .mfem_job_on_matrix
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +mpi +cuda cuda_arch=90 ^hypre+cuda"
|
||||
|
||||
opt_mpi_cuda_gcc_gslib:
|
||||
extends: .mfem_job_on_matrix
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +mpi +cuda +gslib cuda_arch=90 ^hypre+cuda"
|
||||
|
||||
@@ -32,9 +32,9 @@ mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
|
||||
|
||||
# run
|
||||
if [[ "${MACHINE_NAME}" == "dane" ]]; then
|
||||
salloc --nodes=1 -t 60 --exclusive --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
srun --nodes=1 -t 60 --exclusive --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "corona" ]]; then
|
||||
salloc --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
srun --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
else
|
||||
echo "Unknown machine: MACHINE_NAME=$MACHINE_NAME"
|
||||
exit 1
|
||||
|
||||
@@ -11,12 +11,27 @@
|
||||
Version 4.9.1 (development)
|
||||
===========================
|
||||
|
||||
- Policy for AI-assisted contribution added to CONTRIBUTING.md
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Replaced legacy simplex quadrature rules with symmetric positive-weight
|
||||
rules for triangles (orders 0-25) and tetrahedra (orders 0-20). These
|
||||
rules guarantee all-positive weights and interior quadrature points,
|
||||
improving numerical stability. Higher orders fall back to Grundmann-Moller.
|
||||
Triangle rules: Witherden & Vincent, Comput. Math. Appl. 69(10):1232-1241,
|
||||
2015.
|
||||
Tet rules (d=1-13): Witherden & Vincent (ibid).
|
||||
Tet rules (d=14-20): Chuluunbaatar et al., Comput. Math. Appl. 124:89-97,
|
||||
2022.
|
||||
|
||||
- Improved the gridfunction projection routines. Projections work for Scalar,
|
||||
Vector and VectorFE, also NURBS versions. Optionally different types of
|
||||
projections can be selected, default behaviour has not changed.
|
||||
|
||||
- Added methods to estimate function extremum using piecewise linear bounds +
|
||||
recursive subdivision.
|
||||
|
||||
Meshing improvements
|
||||
--------------------
|
||||
- Improved support for 1D NURBS meshes with variable order, including using
|
||||
|
||||
+5
-1
@@ -652,6 +652,8 @@ foreach(TPL IN LISTS MFEM_TPLS)
|
||||
endif()
|
||||
endforeach(TPL)
|
||||
|
||||
# reverse to remove the first instance of entries in TPL_LIBRARIES
|
||||
# so later duplicates are kept (for dependency ordering)
|
||||
list(REVERSE TPL_LIBRARIES)
|
||||
list(REMOVE_DUPLICATES TPL_LIBRARIES)
|
||||
list(REVERSE TPL_LIBRARIES)
|
||||
@@ -1015,5 +1017,7 @@ install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/data
|
||||
# Create 'config.mk' from 'config.mk.in' for the build and install locations and
|
||||
# define install rules for 'config.mk' and 'test.mk'
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
if (MFEM_USE_CUDA OR MFEM_USE_HIP)
|
||||
option(MFEM_EXPORT_GPU_CONFIG "Export config.mk for GPU-enabled downstream packages" ON)
|
||||
endif()
|
||||
mfem_export_mk_files()
|
||||
|
||||
@@ -24,6 +24,14 @@ must be made under this license.
|
||||
Note also that MFEM has a [Code of Conduct](CODE_OF_CONDUCT.md). By participating
|
||||
in the MFEM community, you agree to abide by its rules.
|
||||
|
||||
## AI Policy
|
||||
- Use of AI code generation in MFEM is allowed but must be disclosed, e.g. by
|
||||
selecting the `AI-assisted` label on the PR.
|
||||
- By submitting a PR, the author acknowledges that they have reviewed and
|
||||
understand the changes they are proposing.
|
||||
- PR authors are still responsible for correctness, licensing, and attribution
|
||||
of all changes.
|
||||
|
||||
If you plan on contributing to MFEM, consider reviewing the
|
||||
[issue tracker](https://github.com/mfem/mfem/issues) first to check if a thread
|
||||
already exists for your desired feature or the bug you ran into. Use a pull
|
||||
|
||||
@@ -109,6 +109,10 @@ if (MFEM_USE_RAJA)
|
||||
find_dependency(RAJA)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_UMPIRE)
|
||||
find_dependency(umpire)
|
||||
endif()
|
||||
|
||||
if (NOT TARGET mfem)
|
||||
include(${CMAKE_CURRENT_LIST_DIR}/MFEMTargets.cmake)
|
||||
endif (NOT TARGET mfem)
|
||||
|
||||
@@ -14,12 +14,12 @@
|
||||
# - UMPIRE_LIBRARIES
|
||||
# - UMPIRE_INCLUDE_DIRS
|
||||
|
||||
if (NOT umpire_DIR AND UMPIRE_DIR)
|
||||
set(umpire_DIR ${UMPIRE_DIR}/lib/cmake/umpire)
|
||||
if (NOT umpire_ROOT AND UMPIRE_DIR)
|
||||
set(umpire_ROOT ${UMPIRE_DIR})
|
||||
endif()
|
||||
message(STATUS "Looking for UMPIRE ...")
|
||||
message(STATUS " in UMPIRE_DIR = ${UMPIRE_DIR}")
|
||||
message(STATUS " umpire_DIR = ${umpire_DIR}")
|
||||
message(STATUS " umpire_ROOT = ${umpire_ROOT}")
|
||||
find_package(umpire CONFIG)
|
||||
set(UMPIRE_FOUND ${umpire_FOUND})
|
||||
set(UMPIRE_LIBRARIES "umpire")
|
||||
|
||||
@@ -701,7 +701,6 @@ endfunction(mfem_find_library)
|
||||
# Extract compile and link options needed by the given target.
|
||||
#
|
||||
function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
|
||||
if (NOT TARGET ${Target})
|
||||
return()
|
||||
endif()
|
||||
@@ -799,7 +798,12 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
# message(STATUS "Lib = ${Lib}")
|
||||
# Filter-out generator expressions
|
||||
if (NOT ("${Lib}" MATCHES "^\\$"))
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
if(NOT ("${Lib}" STREQUAL "dl"))
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
else()
|
||||
# for some reason libdl doesn't include the "-l"
|
||||
list(APPEND LinkOpts "-ldl")
|
||||
endif()
|
||||
endif()
|
||||
else()
|
||||
mfem_get_target_options(${Lib} COpts LOpts)
|
||||
@@ -888,9 +892,18 @@ function(mfem_export_mk_files)
|
||||
set(${var} NO)
|
||||
endif()
|
||||
endforeach()
|
||||
# TODO: Add support for MFEM_USE_CUDA=YES
|
||||
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
|
||||
set(MFEM_HOST_CXX ${MFEM_CXX})
|
||||
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
|
||||
set(MFEM_CXX ${CMAKE_CUDA_COMPILER})
|
||||
if(MFEM_CUDA_COMPILER_IS_NVCC)
|
||||
set(MFEM_HOST_CXX ${CMAKE_CUDA_HOST_COMPILER})
|
||||
else()
|
||||
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
else()
|
||||
# mfem doesn't use enable_language(HIP)
|
||||
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
|
||||
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
set(MFEM_CPPFLAGS "")
|
||||
get_target_property(cxx_std mfem CXX_STANDARD)
|
||||
# For now, we ignore the setting of the CXX_EXTENSIONS property. If this
|
||||
@@ -900,6 +913,50 @@ function(mfem_export_mk_files)
|
||||
string(STRIP
|
||||
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
|
||||
MFEM_CXXFLAGS)
|
||||
if(MFEM_EXPORT_GPU_CONFIG)
|
||||
if (MFEM_USE_CUDA)
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} ${CMAKE_CUDA_FLAGS}")
|
||||
if (MFEM_CUDA_COMPILER_IS_NVCC)
|
||||
set(MFEM_CXXFLAGS "-x=cu ${MFEM_CXXFLAGS} -ccbin ${CMAKE_CXX_COMPILER} --forward-unknown-to-host-compiler")
|
||||
# The following intentionally hides CUDA deprecation warnings
|
||||
foreach(ENTRY IN LISTS CUDAToolkit_INCLUDE_DIRS)
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -isystem ${ENTRY}")
|
||||
endforeach()
|
||||
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
|
||||
# architecture flags not part of CMAKE_CUDA_FLAGS
|
||||
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -arch=${CMAKE_CUDA_ARCHITECTURES}")
|
||||
else()
|
||||
foreach (ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
|
||||
set(MFEM_CXXFLAGS
|
||||
"${MFEM_CXXFLAGS} -gencode arch=compute_${ENTRY},code=sm_${ENTRY}")
|
||||
endforeach()
|
||||
endif()
|
||||
endif()
|
||||
else()
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xcuda --cuda-path=${CUDAToolkit_LIBRARY_ROOT}")
|
||||
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
|
||||
# architecture flags not part of CMAKE_CUDA_FLAGS
|
||||
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
|
||||
# TODO: not supported
|
||||
else()
|
||||
foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
|
||||
set(MFEM_CXXFLAGS "-cuda-gpu-arch=sm_${ENTRY} ${MFEM_CXXFLAGS}")
|
||||
endforeach()
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
elseif (MFEM_USE_HIP)
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xhip")
|
||||
foreach(ENTRY IN LISTS CMAKE_HIP_ARCHITECTURES)
|
||||
set(MFEM_CXXFLAGS "--offload-arch=${ENTRY} ${MFEM_CXXFLAGS}")
|
||||
endforeach()
|
||||
endif()
|
||||
endif()
|
||||
set(MFEM_TPLFLAGS "")
|
||||
foreach(dir ${TPL_INCLUDE_DIRS})
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
|
||||
@@ -930,6 +987,9 @@ function(mfem_export_mk_files)
|
||||
set(MFEM_SHARED NO)
|
||||
set(MFEM_STATIC YES)
|
||||
endif()
|
||||
if (MFEM_USE_CUDA)
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} -lcudart")
|
||||
endif()
|
||||
set(MFEM_BUILD_TAG "${CMAKE_SYSTEM}")
|
||||
set(MFEM_PREFIX "${CMAKE_INSTALL_PREFIX}")
|
||||
# For the next 4 variables, these are the values for the build-tree version of
|
||||
@@ -938,8 +998,15 @@ function(mfem_export_mk_files)
|
||||
set(MFEM_LIB_DIR "${PROJECT_BINARY_DIR}")
|
||||
set(MFEM_TEST_MK "${PROJECT_SOURCE_DIR}/config/test.mk")
|
||||
set(MFEM_CONFIG_EXTRA "MFEM_BUILD_DIR ?= ${PROJECT_BINARY_DIR}")
|
||||
# TODO: CUDA/HIP support:
|
||||
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
|
||||
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
|
||||
if (MFEM_CUDA_COMPILER_IS_NVCC)
|
||||
set(MFEM_XLINKER "-Xlinker=")
|
||||
else()
|
||||
set(MFEM_XLINKER "${CMAKE_CUDA_LINKER_WRAPPER_FLAG}")
|
||||
endif()
|
||||
else()
|
||||
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
|
||||
endif()
|
||||
set(MFEM_MPIEXEC ${MPIEXEC})
|
||||
if (NOT MFEM_MPIEXEC)
|
||||
set(MFEM_MPIEXEC "mpirun")
|
||||
@@ -987,16 +1054,21 @@ function(mfem_export_mk_files)
|
||||
# handle interfaces (e.g., SCOREC::apf)
|
||||
if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*" OR "${lib}" MATCHES "ParMoonolith::.*")
|
||||
elseif (TARGET "${lib}")
|
||||
mfem_get_target_options(${lib} CompileOpts LinkOpts)
|
||||
mfem_get_target_options(${lib} CompileOpts2 LinkOpts2)
|
||||
# remove generator expressions
|
||||
string(GENEX_STRIP "${CompileOpts2}" CompileOpts)
|
||||
string(GENEX_STRIP "${LinkOpts2}" LinkOpts)
|
||||
# Removing duplicates may lead to issues:
|
||||
# list(REMOVE_DUPLICATES CompileOpts)
|
||||
# list(REMOVE_DUPLICATES LinkOpts)
|
||||
string(REPLACE ";" " " COpts "${CompileOpts}")
|
||||
string(REPLACE ";" " " LOpts "${LinkOpts}")
|
||||
# message(STATUS "${lib}[COpts]: '${COpts}'")
|
||||
# message(STATUS "${lib}[LOpts]: '${LOpts}'")
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpts}")
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpts}")
|
||||
# message(WARNING "${lib}[LinkOpts]: ${LinkOpts}")
|
||||
# message(WARNING "${lib}[CompileOpts]: ${CompileOpts}")
|
||||
foreach(LOpt IN LISTS LinkOpts)
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpt}")
|
||||
endforeach()
|
||||
foreach(COpt IN LISTS CompileOpts)
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpt}")
|
||||
endforeach()
|
||||
# message(FATAL_ERROR "***** interface lib found ... exiting *****")
|
||||
# handle static and shared libs
|
||||
elseif ("${suffix}" STREQUAL "${CMAKE_SHARED_LIBRARY_SUFFIX}")
|
||||
@@ -1004,7 +1076,7 @@ function(mfem_export_mk_files)
|
||||
get_filename_component(fullLibName ${lib} NAME_WE)
|
||||
string(REGEX REPLACE "^lib" "" libname ${fullLibName})
|
||||
set(MFEM_EXT_LIBS
|
||||
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
|
||||
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
|
||||
else()
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${lib}")
|
||||
endif()
|
||||
@@ -1013,7 +1085,7 @@ function(mfem_export_mk_files)
|
||||
# Create the build-tree version of 'config.mk'
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
|
||||
"${PROJECT_BINARY_DIR}/config/config.mk")
|
||||
"${PROJECT_BINARY_DIR}/config/config.mk" @ONLY)
|
||||
# Copy 'test.mk' from the source-tree to the build-tree
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/test.mk"
|
||||
@@ -1031,7 +1103,7 @@ function(mfem_export_mk_files)
|
||||
# Create the install-tree version of 'config.mk'
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
|
||||
"${PROJECT_BINARY_DIR}/config/config-install.mk")
|
||||
"${PROJECT_BINARY_DIR}/config/config-install.mk" @ONLY)
|
||||
|
||||
# Install rules for 'config.mk' and 'test.mk'
|
||||
install(FILES ${PROJECT_SOURCE_DIR}/config/test.mk
|
||||
|
||||
@@ -215,7 +215,7 @@ if (MFEM_ENABLE_TESTING)
|
||||
add_test(NAME ex1p_ceed_np=${MFEM_MPI_NP}
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS}
|
||||
$<TARGET_FILE:ex1p> "-no-vis" "-d ceed-cpu" "-pa" "-a"
|
||||
$<TARGET_FILE:ex1p> "-no-vis" "-d" "ceed-cpu" "-pa" "-a"
|
||||
${MPIEXEC_POSTFLAGS})
|
||||
endif()
|
||||
endif()
|
||||
|
||||
@@ -64,7 +64,7 @@ PARALLEL_NAME := Parallel AMGX example
|
||||
$(MFEM_LIB_FILE):
|
||||
$(error The MFEM library is not build)
|
||||
|
||||
clean: clean-build
|
||||
clean: clean-build clean-exec
|
||||
|
||||
clean-build:
|
||||
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
|
||||
|
||||
@@ -64,12 +64,12 @@ ex1p-test-par: ex1p
|
||||
$(MFEM_LIB_FILE):
|
||||
$(error The MFEM library is not built)
|
||||
|
||||
clean: clean-build clean-exec $(SUBDIRS_CLEAN)
|
||||
clean: clean-build clean-exec
|
||||
|
||||
clean-build:
|
||||
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
|
||||
rm -rf *.dSYM *.TVD.*breakpoints
|
||||
|
||||
clean-exec:
|
||||
@rm -f refined.mesh displaced.mesh mesh.* ex5.mesh
|
||||
@rm -f sphere_refined.* sol.* sol_u.* sol_p.* sol_r.* sol_i.*
|
||||
@rm -f refined.mesh mesh.*
|
||||
@rm -f sol.*
|
||||
|
||||
+2
-2
@@ -5,9 +5,9 @@
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tri.mesh
|
||||
// mpirun -np 4 ex12p -m ../data/beam-quad.mesh
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 462 -n 10 -o 2 -elast
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 464 -n 10 -o 2 -elast
|
||||
// mpirun -np 4 ex12p -m ../data/beam-hex.mesh -s 3878
|
||||
// mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 81
|
||||
// mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 82
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tri.mesh -s 3877 -o 2 -sys
|
||||
// mpirun -np 4 ex12p -m ../data/beam-quad.mesh -s 4544 -n 6 -o 3 -elast
|
||||
// mpirun -np 4 ex12p -m ../data/beam-quad-nurbs.mesh
|
||||
|
||||
+27
-9
@@ -302,15 +302,21 @@ int main(int argc, char *argv[])
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock_r(vishost, visport);
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_r.precision(8);
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_r << "solution\n" << *pmesh << u_exact->real()
|
||||
<< "window_title 'Exact: Real Part'" << flush;
|
||||
// Make sure all ranks have sent their real solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
|
||||
<< "window_title 'Exact: Imaginary Part'" << flush;
|
||||
// Make sure all ranks have sent their imaginary solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
}
|
||||
|
||||
// 11. Set up the parallel sesquilinear form a(.,.) on the finite element
|
||||
@@ -534,15 +540,21 @@ int main(int argc, char *argv[])
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock_r(vishost, visport);
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_r.precision(8);
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_r << "solution\n" << *pmesh << u.real()
|
||||
<< "window_title 'Solution: Real Part'" << flush;
|
||||
// Make sure all ranks have sent their real solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_i << "solution\n" << *pmesh << u.imag()
|
||||
<< "window_title 'Solution: Imaginary Part'" << flush;
|
||||
// Make sure all ranks have sent their imaginary solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
}
|
||||
if (visualization && exact_sol)
|
||||
{
|
||||
@@ -551,15 +563,21 @@ int main(int argc, char *argv[])
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock_r(vishost, visport);
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_r.precision(8);
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_r << "solution\n" << *pmesh << u_exact->real()
|
||||
<< "window_title 'Error: Real Part'" << flush;
|
||||
// Make sure all ranks have sent their real solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
|
||||
<< "window_title 'Error: Imaginary Part'" << flush;
|
||||
// Make sure all ranks have sent their imaginary solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
}
|
||||
if (visualization)
|
||||
{
|
||||
|
||||
+11
-52
@@ -5,8 +5,8 @@
|
||||
// Sample runs:
|
||||
// ex37 -alpha 10
|
||||
// ex37 -alpha 10 -pv
|
||||
// ex37 -lambda 0.1 -mu 0.1
|
||||
// ex37 -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
|
||||
// ex37 -lambda 0.1 -mu 0.1 -growth 1
|
||||
// ex37 -o 2 -alpha 10.0 -mi 50 -vf 0.4 -ntol 1e-5 -growth 1.5
|
||||
// ex37 -r 6 -o 1 -alpha 25.0 -epsilon 0.02 -mi 50 -ntol 1e-5
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to solve a
|
||||
@@ -55,53 +55,6 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Newton iteration tolerance
|
||||
* @param max_its Newton maximum iteration number
|
||||
* @return real_t Final volume, ∫_Ω sigmoid(ψ)
|
||||
*/
|
||||
real_t proj(GridFunction &psi, real_t target_volume, real_t tol=1e-12,
|
||||
int max_its=10)
|
||||
{
|
||||
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
|
||||
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
|
||||
|
||||
LinearForm int_sigmoid_psi(psi.FESpace());
|
||||
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
LinearForm int_der_sigmoid_psi(psi.FESpace());
|
||||
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
|
||||
der_sigmoid_psi));
|
||||
bool done = false;
|
||||
for (int k=0; k<max_its; k++) // Newton iteration
|
||||
{
|
||||
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
|
||||
const real_t f = int_sigmoid_psi.Sum() - target_volume;
|
||||
|
||||
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
|
||||
const real_t df = int_der_sigmoid_psi.Sum();
|
||||
|
||||
const real_t dc = -f/df;
|
||||
psi += dc;
|
||||
if (abs(dc) < tol) { done = true; break; }
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
int_sigmoid_psi.Assemble();
|
||||
return int_sigmoid_psi.Sum();
|
||||
}
|
||||
|
||||
/*
|
||||
* ---------------------------------------------------------------
|
||||
* ALGORITHM PREAMBLE
|
||||
@@ -180,10 +133,11 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 5;
|
||||
int order = 2;
|
||||
real_t alpha = 1.0;
|
||||
real_t growth = 2;
|
||||
real_t epsilon = 0.01;
|
||||
real_t vol_fraction = 0.5;
|
||||
int max_it = 1e3;
|
||||
real_t itol = 1e-1;
|
||||
real_t itol = 1e-2;
|
||||
real_t ntol = 1e-4;
|
||||
real_t rho_min = 1e-6;
|
||||
real_t lambda = 1.0;
|
||||
@@ -198,6 +152,8 @@ int main(int argc, char *argv[])
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
|
||||
"Step length for gradient descent.");
|
||||
args.AddOption(&growth, "-growth", "--alpha-growth-rate",
|
||||
"Growth rate of step length for gradient descent.");
|
||||
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
|
||||
"Length scale for ρ.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
@@ -332,6 +288,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
|
||||
FilterSolver->SetupFEM();
|
||||
FilterSolver->AssembleDiffusionBilinear();
|
||||
|
||||
BilinearForm mass(&control_fes);
|
||||
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
|
||||
@@ -385,7 +342,7 @@ int main(int argc, char *argv[])
|
||||
// 11. Iterate:
|
||||
for (int k = 1; k <= max_it; k++)
|
||||
{
|
||||
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
|
||||
if (k > 1) { alpha = std::pow((real_t) k,growth); }
|
||||
|
||||
mfem::out << "\nStep = " << k << std::endl;
|
||||
|
||||
@@ -422,7 +379,9 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Step 5 - Update design variable ψ ← proj(ψ - αG)
|
||||
psi.Add(-alpha, grad);
|
||||
const real_t material_volume = proj(psi, target_volume);
|
||||
GridFunction alpha_grad(grad);
|
||||
alpha_grad *= alpha;
|
||||
const real_t material_volume = proj(psi, alpha_grad, target_volume);
|
||||
|
||||
// Compute ||ρ - ρ_old|| in control fes.
|
||||
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
|
||||
+189
-29
@@ -137,7 +137,7 @@ public:
|
||||
exponent(exponent_), rho_min(rho_min_)
|
||||
{
|
||||
MFEM_ASSERT(rho_min_ >= 0.0, "rho_min must be >= 0");
|
||||
MFEM_ASSERT(rho_min_ < 1.0, "rho_min must be > 1");
|
||||
MFEM_ASSERT(rho_min_ < 1.0, "rho_min must be < 1");
|
||||
MFEM_ASSERT(u, "displacement field is not set");
|
||||
MFEM_ASSERT(rho_filter, "density field is not set");
|
||||
}
|
||||
@@ -231,9 +231,12 @@ private:
|
||||
FiniteElementCollection * fec = nullptr;
|
||||
FiniteElementSpace * fes = nullptr;
|
||||
Array<int> ess_bdr;
|
||||
Array<int> ess_tdof_list;
|
||||
Array<int> neumann_bdr;
|
||||
GridFunction * u = nullptr;
|
||||
LinearForm * b = nullptr;
|
||||
BilinearForm * a = nullptr;
|
||||
OperatorPtr A;
|
||||
bool parallel;
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParMesh * pmesh = nullptr;
|
||||
@@ -267,6 +270,8 @@ public:
|
||||
void ResetFEM();
|
||||
void SetupFEM();
|
||||
|
||||
void UpdateEssentialTDofs();
|
||||
void AssembleDiffusionBilinear(bool update_ess_tdofs=true);
|
||||
void Solve();
|
||||
GridFunction * GetFEMSolution();
|
||||
LinearForm * GetLinearForm() {return b;}
|
||||
@@ -371,6 +376,130 @@ public:
|
||||
|
||||
};
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* using the Illinois method
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param alpha_grad alpha multiplied by gradient
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Illinois iteration tolerance
|
||||
* @param max_its Illinois maximum iteration number
|
||||
* @return real_t Final volume (∫_Ω sigmoid(ψ) dx)
|
||||
*/
|
||||
real_t proj(GridFunction &psi, GridFunction &alpha_grad, real_t target_volume,
|
||||
real_t tol = 1e-12, int max_its = 100)
|
||||
{
|
||||
#ifdef MFEM_USE_MPI
|
||||
FiniteElementSpace *fes = psi.FESpace();
|
||||
ParFiniteElementSpace *pfes = dynamic_cast<ParFiniteElementSpace*>(fes);
|
||||
#endif
|
||||
ConstantCoefficient zero_cf(0.0);
|
||||
real_t a = -alpha_grad.ComputeMaxError(zero_cf);
|
||||
real_t b = -a;
|
||||
real_t y = 0.0;
|
||||
|
||||
MappedGridFunctionCoefficient sigmoid_psi(
|
||||
&psi, [&y](const real_t x) { return sigmoid(x + y); });
|
||||
std::unique_ptr<LinearForm> int_sigmoid_psi;
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParGridFunction *par_psi = dynamic_cast<ParGridFunction *>(&psi);
|
||||
if (par_psi)
|
||||
{
|
||||
int_sigmoid_psi.reset(new ParLinearForm(par_psi->ParFESpace()));
|
||||
}
|
||||
else
|
||||
{
|
||||
int_sigmoid_psi.reset(new LinearForm(psi.FESpace()));
|
||||
}
|
||||
#else
|
||||
int_sigmoid_psi.reset(new LinearForm(psi.FESpace()));
|
||||
#endif
|
||||
int_sigmoid_psi->AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
|
||||
y = a;
|
||||
int_sigmoid_psi->Assemble();
|
||||
real_t f_a = int_sigmoid_psi->Sum(); // f_a := f(a) + θ vol(Ω)
|
||||
|
||||
y = b;
|
||||
int_sigmoid_psi->Assemble();
|
||||
real_t f_b = int_sigmoid_psi->Sum(); // f_b := f(b) + θ vol(Ω)
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (pfes)
|
||||
{
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f_a, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f_b, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
}
|
||||
#endif
|
||||
f_a -= target_volume; // f_a := f(a)
|
||||
f_b -= target_volume; // f_b := f(b)
|
||||
real_t c = 0.0;
|
||||
real_t f_c = 0.0;
|
||||
int side = 0;
|
||||
|
||||
bool done = false;
|
||||
for (int k=0; k < max_its; k++)
|
||||
{
|
||||
c = (f_a * b - f_b * a) / (f_a - f_b);
|
||||
|
||||
if (abs(b - a) < tol * abs(b + a)) { done = true; break; }
|
||||
|
||||
y = c;
|
||||
int_sigmoid_psi->Assemble();
|
||||
f_c = int_sigmoid_psi->Sum(); // f_c := f(c) + θ vol(Ω)
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (pfes)
|
||||
{
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f_c, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
}
|
||||
#endif
|
||||
f_c -= target_volume; // f_c := f(c)
|
||||
|
||||
if (f_c * f_b > 0)
|
||||
{
|
||||
b = c;
|
||||
f_b = f_c;
|
||||
if (side == -1) { f_a /= 2.0; }
|
||||
side = -1;
|
||||
}
|
||||
else if (f_c * f_a > 0)
|
||||
{
|
||||
a = c;
|
||||
f_a = f_c;
|
||||
if (side == 1) { f_b /= 2.0; }
|
||||
side = 1;
|
||||
}
|
||||
else
|
||||
{
|
||||
done = true; break;
|
||||
}
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
y = 0.0;
|
||||
psi += c;
|
||||
int_sigmoid_psi->Assemble();
|
||||
real_t material_volume = int_sigmoid_psi->Sum();
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (pfes)
|
||||
{
|
||||
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1,
|
||||
MPITypeMap<real_t>::mpi_type, MPI_SUM, MPI_COMM_WORLD);
|
||||
}
|
||||
#endif
|
||||
return material_volume;
|
||||
}
|
||||
|
||||
// Poisson solver
|
||||
|
||||
@@ -422,12 +551,8 @@ void DiffusionSolver::SetupFEM()
|
||||
}
|
||||
}
|
||||
|
||||
void DiffusionSolver::Solve()
|
||||
void DiffusionSolver::UpdateEssentialTDofs()
|
||||
{
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
Array<int> ess_tdof_list;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
@@ -440,7 +565,39 @@ void DiffusionSolver::Solve()
|
||||
#else
|
||||
fes->GetEssentialTrueDofs(ess_bdr,ess_tdof_list);
|
||||
#endif
|
||||
*u=0.0;
|
||||
}
|
||||
|
||||
void DiffusionSolver::AssembleDiffusionBilinear(bool update_ess_tdofs)
|
||||
{
|
||||
if (update_ess_tdofs)
|
||||
{
|
||||
UpdateEssentialTDofs();
|
||||
}
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
a = new ParBilinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
a = new BilinearForm(fes);
|
||||
}
|
||||
#else
|
||||
a = new BilinearForm(fes);
|
||||
#endif
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(*diffcf));
|
||||
if (masscf)
|
||||
{
|
||||
a->AddDomainIntegrator(new MassIntegrator(*masscf));
|
||||
}
|
||||
a->Assemble();
|
||||
a->FormSystemMatrix(ess_tdof_list, A);
|
||||
}
|
||||
|
||||
void DiffusionSolver::Solve()
|
||||
{
|
||||
Vector B, X;
|
||||
|
||||
if (b)
|
||||
{
|
||||
delete b;
|
||||
@@ -475,31 +632,33 @@ void DiffusionSolver::Solve()
|
||||
|
||||
b->Assemble();
|
||||
|
||||
BilinearForm * a = nullptr;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
a = new ParBilinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
a = new BilinearForm(fes);
|
||||
}
|
||||
#else
|
||||
a = new BilinearForm(fes);
|
||||
#endif
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(*diffcf));
|
||||
if (masscf)
|
||||
{
|
||||
a->AddDomainIntegrator(new MassIntegrator(*masscf));
|
||||
}
|
||||
a->Assemble();
|
||||
*u=0.0;
|
||||
if (essbdr_cf)
|
||||
{
|
||||
u->ProjectBdrCoefficient(*essbdr_cf,ess_bdr);
|
||||
}
|
||||
a->FormLinearSystem(ess_tdof_list, *u, *b, A, X, B);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
X.SetSize(pfes->TrueVSize());
|
||||
B.SetSize(pfes->TrueVSize());
|
||||
dynamic_cast<ParGridFunction*>(u)->ParallelAssemble(X);
|
||||
dynamic_cast<ParLinearForm*>(b)->ParallelAssemble(B);
|
||||
dynamic_cast<ParBilinearForm*>(a)->ParallelEliminateTDofsInRHS(
|
||||
ess_tdof_list, X, B);
|
||||
}
|
||||
else
|
||||
{
|
||||
X.NewDataAndSize(u->GetData(), u->Size());
|
||||
B.NewDataAndSize(b->GetData(), b->Size());
|
||||
a->EliminateVDofsInRHS(ess_tdof_list, X, B);
|
||||
}
|
||||
#else
|
||||
X.NewDataAndSize(u->GetData(), u->Size());
|
||||
B.NewDataAndSize(b->GetData(), b->Size());
|
||||
a->EliminateVDofsInRHS(ess_tdof_list, X, B);
|
||||
#endif
|
||||
|
||||
CGSolver * cg = nullptr;
|
||||
Solver * M = nullptr;
|
||||
@@ -528,7 +687,6 @@ void DiffusionSolver::Solve()
|
||||
delete M;
|
||||
delete cg;
|
||||
a->RecoverFEMSolution(X, *b, *u);
|
||||
delete a;
|
||||
}
|
||||
|
||||
GridFunction * DiffusionSolver::GetFEMSolution()
|
||||
@@ -560,6 +718,8 @@ DiffusionSolver::~DiffusionSolver()
|
||||
#endif
|
||||
delete fec; fec = nullptr;
|
||||
delete b;
|
||||
A.Clear();
|
||||
delete a;
|
||||
}
|
||||
|
||||
|
||||
|
||||
+11
-60
@@ -4,8 +4,8 @@
|
||||
//
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex37p -alpha 10 -pv
|
||||
// mpirun -np 4 ex37p -lambda 0.1 -mu 0.1
|
||||
// mpirun -np 4 ex37p -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
|
||||
// mpirun -np 4 ex37p -lambda 0.1 -mu 0.1 -growth 1
|
||||
// mpirun -np 4 ex37p -o 2 -alpha 10.0 -mi 50 -vf 0.4 -ntol 1e-5 -growth 1.5
|
||||
// mpirun -np 4 ex37p -r 6 -o 2 -alpha 10.0 -epsilon 0.02 -mi 50 -ntol 1e-5
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to solve a
|
||||
@@ -54,61 +54,6 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Newton iteration tolerance
|
||||
* @param max_its Newton maximum iteration number
|
||||
* @return real_t Final volume, ∫_Ω sigmoid(ψ)
|
||||
*/
|
||||
real_t proj(ParGridFunction &psi, real_t target_volume, real_t tol=1e-12,
|
||||
int max_its=10)
|
||||
{
|
||||
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
|
||||
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
|
||||
|
||||
ParLinearForm int_sigmoid_psi(psi.ParFESpace());
|
||||
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
ParLinearForm int_der_sigmoid_psi(psi.ParFESpace());
|
||||
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
|
||||
der_sigmoid_psi));
|
||||
bool done = false;
|
||||
for (int k=0; k<max_its; k++) // Newton iteration
|
||||
{
|
||||
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
|
||||
real_t f = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
f -= target_volume;
|
||||
|
||||
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
|
||||
real_t df = int_der_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &df, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
|
||||
const real_t dc = -f/df;
|
||||
psi += dc;
|
||||
if (abs(dc) < tol) { done = true; break; }
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
int_sigmoid_psi.Assemble();
|
||||
real_t material_volume = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1,
|
||||
MPITypeMap<real_t>::mpi_type, MPI_SUM, MPI_COMM_WORLD);
|
||||
return material_volume;
|
||||
}
|
||||
|
||||
/*
|
||||
* ---------------------------------------------------------------
|
||||
* ALGORITHM PREAMBLE
|
||||
@@ -193,10 +138,11 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 5;
|
||||
int order = 2;
|
||||
real_t alpha = 1.0;
|
||||
real_t growth = 2;
|
||||
real_t epsilon = 0.01;
|
||||
real_t vol_fraction = 0.5;
|
||||
int max_it = 1e3;
|
||||
real_t itol = 1e-1;
|
||||
real_t itol = 1e-2;
|
||||
real_t ntol = 1e-4;
|
||||
real_t rho_min = 1e-6;
|
||||
real_t lambda = 1.0;
|
||||
@@ -211,6 +157,8 @@ int main(int argc, char *argv[])
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
|
||||
"Step length for gradient descent.");
|
||||
args.AddOption(&growth, "-growth", "--alpha-growth-rate",
|
||||
"Growth rate of step length for gradient descent.");
|
||||
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
|
||||
"Length scale for ρ.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
@@ -359,6 +307,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
|
||||
FilterSolver->SetupFEM();
|
||||
FilterSolver->AssembleDiffusionBilinear();
|
||||
|
||||
ParBilinearForm mass(&control_fes);
|
||||
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
|
||||
@@ -412,7 +361,7 @@ int main(int argc, char *argv[])
|
||||
// 11. Iterate:
|
||||
for (int k = 1; k <= max_it; k++)
|
||||
{
|
||||
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
|
||||
if (k > 1) { alpha = std::pow((real_t) k,growth); }
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
@@ -452,7 +401,9 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Step 5 - Update design variable ψ ← proj(ψ - αG)
|
||||
psi.Add(-alpha, grad);
|
||||
const real_t material_volume = proj(psi, target_volume);
|
||||
ParGridFunction alpha_grad(grad);
|
||||
alpha_grad *= alpha;
|
||||
const real_t material_volume = proj(psi, alpha_grad, target_volume);
|
||||
|
||||
// Compute ||ρ - ρ_old|| in control fes.
|
||||
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
|
||||
@@ -76,4 +76,4 @@ clean-build:
|
||||
rm -rf *.dSYM *.TVD.*breakpoints
|
||||
|
||||
clean-exec:
|
||||
@rm -f refined.mesh sol.gf
|
||||
@rm -f refined.mesh sol.gf mesh.* sol.*
|
||||
|
||||
+7
-2
@@ -71,6 +71,7 @@ endif
|
||||
|
||||
SUBDIRS_ALL = $(addsuffix /all,$(SUBDIRS))
|
||||
SUBDIRS_TEST = $(addsuffix /test,$(SUBDIRS))
|
||||
SUBDIRS_TEST_NOCLEAN = $(addsuffix /test-noclean,$(SUBDIRS))
|
||||
SUBDIRS_CLEAN = $(addsuffix /clean,$(SUBDIRS))
|
||||
SUBDIRS_TPRINT = $(addsuffix /test-print,$(SUBDIRS))
|
||||
|
||||
@@ -87,8 +88,9 @@ SUBDIRS_TPRINT = $(addsuffix /test-print,$(SUBDIRS))
|
||||
|
||||
all: $(EXAMPLES) $(SUBDIRS_ALL)
|
||||
|
||||
.PHONY: $(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_CLEAN) $(SUBDIRS_TPRINT)
|
||||
$(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_CLEAN):
|
||||
.PHONY: $(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_TEST_NOCLEAN) \
|
||||
$(SUBDIRS_CLEAN) $(SUBDIRS_TPRINT)
|
||||
$(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_TEST_NOCLEAN) $(SUBDIRS_CLEAN):
|
||||
$(MAKE) -C $(@D) $(@F)
|
||||
$(SUBDIRS_TPRINT):
|
||||
@$(MAKE) -C $(@D) $(@F)
|
||||
@@ -107,6 +109,7 @@ endif
|
||||
MFEM_TESTS = EXAMPLES
|
||||
include $(MFEM_TEST_MK)
|
||||
test: $(SUBDIRS_TEST)
|
||||
test-noclean: $(SUBDIRS_TEST_NOCLEAN)
|
||||
test-print: $(SUBDIRS_TPRINT)
|
||||
|
||||
# Testing: Parallel vs. serial runs
|
||||
@@ -157,6 +160,8 @@ ex37-test-seq: ex37
|
||||
@$(call mfem-test,$<,, Serial example,-mi 3)
|
||||
ex37p-test-par: ex37p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-mi 3)
|
||||
ex39-test-seq: ex39
|
||||
@$(call mfem-test,$<,, Serial example,-m ../data/compass.mesh)
|
||||
ex41-test-seq: ex41
|
||||
@$(call mfem-test,$<,, Serial example,-tf 1.0)
|
||||
ex41p-test-par: ex41p
|
||||
|
||||
@@ -729,7 +729,8 @@ void BilinearForm::Assemble(int skip_zeros)
|
||||
tr = mesh -> GetBdrFaceTransformations (i);
|
||||
if (tr != NULL)
|
||||
{
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs);
|
||||
mfem::DofTransformation doftrans;
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs, doftrans);
|
||||
fe1 = fes -> GetFE (tr -> Elem1No);
|
||||
// The fe2 object is really a dummy and not used on the boundaries,
|
||||
// but we can't dereference a NULL pointer, and we don't want to
|
||||
@@ -743,6 +744,7 @@ void BilinearForm::Assemble(int skip_zeros)
|
||||
|
||||
boundary_face_integs[k] -> AssembleFaceMatrix (*fe1, *fe2, *tr,
|
||||
elemmat);
|
||||
doftrans.TransformDual(elemmat);
|
||||
mat -> AddSubMatrix (vdofs, vdofs, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
@@ -1723,6 +1725,7 @@ void MixedBilinearForm::Assemble(int skip_zeros)
|
||||
}
|
||||
}
|
||||
|
||||
DofTransformation dom_dof_trans, ran_dof_trans;
|
||||
for (int i = 0; i < trial_fes -> GetNBE(); i++)
|
||||
{
|
||||
const int bdr_attr = mesh->GetBdrAttribute(i);
|
||||
@@ -1731,8 +1734,8 @@ void MixedBilinearForm::Assemble(int skip_zeros)
|
||||
ftr = mesh -> GetBdrFaceTransformations (i);
|
||||
if (ftr != NULL)
|
||||
{
|
||||
trial_fes->GetElementVDofs(ftr->Elem1No, trial_vdofs);
|
||||
test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs);
|
||||
trial_fes->GetElementVDofs(ftr->Elem1No, trial_vdofs, dom_dof_trans);
|
||||
test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs, ran_dof_trans);
|
||||
trial_fe1 = trial_fes->GetFE(ftr->Elem1No);
|
||||
test_fe1 = test_fes->GetFE(ftr->Elem1No);
|
||||
// The test_fe2 object is really a dummy and not used on the
|
||||
@@ -1748,6 +1751,7 @@ void MixedBilinearForm::Assemble(int skip_zeros)
|
||||
boundary_face_integs[k]->AssembleFaceMatrix(*trial_fe1, *test_fe1, *trial_fe2,
|
||||
*test_fe2,
|
||||
*ftr, elemmat);
|
||||
TransformDual(ran_dof_trans, dom_dof_trans, elemmat);
|
||||
mat->AddSubMatrix(test_vdofs, trial_vdofs, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
|
||||
+1
-1
@@ -2710,7 +2710,7 @@ public:
|
||||
|
||||
|
||||
/** Integrator for $(-Q u, \nabla v)$ for Nedelec ($u$) and $H^1$ ($v$) elements.
|
||||
This is equivalent to a weak divergence of the $H(curl$ basis functions. */
|
||||
This is equivalent to a weak divergence of the $H(curl)$ basis functions. */
|
||||
class VectorFEWeakDivergenceIntegrator: public BilinearFormIntegrator
|
||||
{
|
||||
protected:
|
||||
|
||||
+82
-27
@@ -39,11 +39,16 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
|
||||
b_type = b_type_i;
|
||||
cp_type = cp_type_i;
|
||||
tol = tol_i;
|
||||
lbound.SetSize(nb, ncp);
|
||||
ubound.SetSize(nb, ncp);
|
||||
lbound.SetSize(ncp, nb);
|
||||
ubound.SetSize(ncp, nb);
|
||||
lbound_t.SetSize(nb, ncp);
|
||||
ubound_t.SetSize(nb, ncp);
|
||||
nodes.SetSize(nb);
|
||||
weights.SetSize(nb);
|
||||
control_points.SetSize(ncp);
|
||||
xhat.SetSize(nb);
|
||||
what.SetSize(nb);
|
||||
cphat.SetSize(ncp);
|
||||
|
||||
auto scalenodes = [](const Vector &in, const real_t a, const real_t b) -> Vector
|
||||
{
|
||||
@@ -90,6 +95,10 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
|
||||
MFEM_ABORT("Unsupported interval points. Use [0,1].\n");
|
||||
}
|
||||
control_points = scalenodes(control_points, 0.0, 1.0); // rescale to [0,1]
|
||||
for (int i = 0; i < ncp; i++)
|
||||
{
|
||||
cphat(i) = 2.0*control_points(i) - 1.0;
|
||||
}
|
||||
|
||||
Poly_1D::Basis &basis1d(poly1d.GetBasis(nb-1, b_type));
|
||||
|
||||
@@ -125,22 +134,28 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
|
||||
{
|
||||
if (j == 0)
|
||||
{
|
||||
lbound(i, j) = bv(i);
|
||||
ubound(i, j) = bv(i);
|
||||
lbound(j,i) = bv(i);
|
||||
ubound(j,i) = bv(i);
|
||||
}
|
||||
else if (j == ncp-1)
|
||||
{
|
||||
lbound(i, j) = bv(i);
|
||||
ubound(i, j) = bv(i);
|
||||
lbound(j,i) = bv(i);
|
||||
ubound(j,i) = bv(i);
|
||||
}
|
||||
else
|
||||
{
|
||||
vals(0) = bv(i);
|
||||
vals(1) = bmv(i) + dm*bdmv(i);
|
||||
vals(2) = bpv(i) + dp*bdpv(i);
|
||||
lbound(i, j) = vals.Min()-tol; // tolerance for good measure
|
||||
ubound(i, j) = vals.Max()+tol; // tolerance for good measure
|
||||
lbound(j,i) = vals.Min()-tol; // tolerance for good measure
|
||||
ubound(j,i) = vals.Max()+tol; // tolerance for good measure
|
||||
if (b_type == 2)
|
||||
{
|
||||
lbound(j,i) = std::max(lbound(j,i),0_r);
|
||||
}
|
||||
}
|
||||
lbound_t(i,j) = lbound(j,i);
|
||||
ubound_t(i,j) = ubound(j,i);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -172,6 +187,11 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
|
||||
nodes(i) = irule.IntPoint(i).x;
|
||||
}
|
||||
}
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
xhat(i) = 2.0*nodes(i) - 1.0;
|
||||
what(i) = 2.0*weights(i);
|
||||
}
|
||||
|
||||
if (b_type == 2)
|
||||
{
|
||||
@@ -273,8 +293,7 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
|
||||
intmax.SetSize(ncp);
|
||||
intmin = 0.0;
|
||||
intmax = 0.0;
|
||||
Vector coeffm(nb);
|
||||
coeffm = 0.0;
|
||||
Vector coeffm;
|
||||
|
||||
real_t a0 = 0.0;
|
||||
real_t a1 = 0.0;
|
||||
@@ -302,6 +321,8 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
|
||||
// compute L2 projection for linear bases: a0 + a1*x
|
||||
if (proj)
|
||||
{
|
||||
coeffm.SetSize(nb);
|
||||
coeffm = 0.0;
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
x = 2.0*nodes_int(i)-1;
|
||||
@@ -342,8 +363,8 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
|
||||
real_t c = coeffm(i);
|
||||
for (int j = 0; j < ncp; j++)
|
||||
{
|
||||
intmin(j) += min(lbound(i,j)*c, ubound(i,j)*c);
|
||||
intmax(j) += max(lbound(i,j)*c, ubound(i,j)*c);
|
||||
intmin(j) += min(lbound(j,i)*c, ubound(j,i)*c);
|
||||
intmax(j) += max(lbound(j,i)*c, ubound(j,i)*c);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -474,10 +495,10 @@ void PLBound::Get2DBounds(const Vector &coeff, Vector &intmin,
|
||||
real_t w1 = intmaxT(id2++);
|
||||
for (int k = 0; k < ncp; k++) // kth row
|
||||
{
|
||||
vals(0) = w0*lbound(j,k);
|
||||
vals(1) = w0*ubound(j,k);
|
||||
vals(2) = w1*lbound(j,k);
|
||||
vals(3) = w1*ubound(j,k);
|
||||
vals(0) = w0*lbound(k,j);
|
||||
vals(1) = w0*ubound(k,j);
|
||||
vals(2) = w1*lbound(k,j);
|
||||
vals(3) = w1*ubound(k,j);
|
||||
intmin(k*ncp+i) += vals.Min();
|
||||
intmax(k*ncp+i) += vals.Max();
|
||||
}
|
||||
@@ -553,17 +574,17 @@ void PLBound::Get3DBounds(const Vector &coeff, Vector &intmin,
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
x = 2.0*nodes(i)-1; // x-coordinate
|
||||
minBounds(i) -= a0V(j) + a1V(j)*x;
|
||||
maxBounds(i) -= a0V(j) + a1V(j)*x;
|
||||
minNodalVals(i) -= a0V(j) + a1V(j)*x;
|
||||
maxNodalVals(i) -= a0V(j) + a1V(j)*x;
|
||||
}
|
||||
// Compute Bernstein coefficients
|
||||
LUFactors lu(basisMatLU.GetData(), lu_ip.GetData());
|
||||
lu.Solve(nb, 1, minBounds.GetData());
|
||||
lu.Solve(nb, 1, maxBounds.GetData());
|
||||
lu.Solve(nb, 1, minNodalVals.GetData());
|
||||
lu.Solve(nb, 1, maxNodalVals.GetData());
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
intminT(i*ncp2+j) = minBounds(i);
|
||||
intmaxT(i*ncp2+j) = maxBounds(i);
|
||||
intminT(i*ncp2+j) = minNodalVals(i);
|
||||
intmaxT(i*ncp2+j) = maxNodalVals(i);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -617,10 +638,10 @@ void PLBound::Get3DBounds(const Vector &coeff, Vector &intmin,
|
||||
real_t w1 = intmaxT(id2++);
|
||||
for (int k = 0; k < ncp; k++) // kth slice
|
||||
{
|
||||
vals(0) = w0*lbound(j,k);
|
||||
vals(1) = w0*ubound(j,k);
|
||||
vals(2) = w1*lbound(j,k);
|
||||
vals(3) = w1*ubound(j,k);
|
||||
vals(0) = w0*lbound(k,j);
|
||||
vals(1) = w0*ubound(k,j);
|
||||
vals(2) = w1*lbound(k,j);
|
||||
vals(3) = w1*ubound(k,j);
|
||||
intmin(k*ncp2+i) += vals.Min();
|
||||
intmax(k*ncp2+i) += vals.Max();
|
||||
}
|
||||
@@ -653,7 +674,8 @@ void PLBound::SetupBernsteinBasisMat(DenseMatrix &basisMat,
|
||||
Vector &nodesBern) const
|
||||
{
|
||||
const int nbern = nodesBern.Size();
|
||||
L2_SegmentElement el(nbern-1, 2); // we use L2 to leverage lexicographic order
|
||||
L2_SegmentElement el(nbern-1, 2);
|
||||
// we use L2 to leverage lexicographic order
|
||||
Array<int> ordering = el.GetLexicographicOrdering();
|
||||
basisMat.SetSize(nbern, nbern);
|
||||
Vector shape(nbern);
|
||||
@@ -666,6 +688,39 @@ void PLBound::SetupBernsteinBasisMat(DenseMatrix &basisMat,
|
||||
}
|
||||
}
|
||||
|
||||
DenseMatrix PLBound::GetBoundingMatrix(int dim, bool is_lower) const
|
||||
{
|
||||
if (dim > 1)
|
||||
{
|
||||
const int ncpd = static_cast<int>(std::pow(ncp, dim));
|
||||
const int nbd = static_cast<int>(std::pow(nb, dim));
|
||||
DenseMatrix boundND(ncpd, nbd);
|
||||
Vector phimin, phimax, col;
|
||||
Vector coeffs(nbd);
|
||||
coeffs = 0.0;
|
||||
for (int j = 0; j < nbd; j++)
|
||||
{
|
||||
coeffs(j) = 1.0;
|
||||
boundND.GetColumnReference(j, col);
|
||||
GetNDBounds(dim, coeffs, phimin, phimax);
|
||||
col = is_lower ? phimin : phimax;
|
||||
coeffs(j) = 0.0;
|
||||
}
|
||||
return boundND;
|
||||
}
|
||||
return is_lower ? lbound : ubound;
|
||||
}
|
||||
|
||||
DenseMatrix PLBound::GetLowerBoundMatrix(int dim) const
|
||||
{
|
||||
return GetBoundingMatrix(dim, true);
|
||||
}
|
||||
|
||||
DenseMatrix PLBound::GetUpperBoundMatrix(int dim) const
|
||||
{
|
||||
return GetBoundingMatrix(dim, false);
|
||||
}
|
||||
|
||||
constexpr int PLBound::min_ncp_gl_x[2][11];
|
||||
constexpr int PLBound::min_ncp_gll_x[2][11];
|
||||
constexpr int PLBound::min_ncp_pos_x[2][11];
|
||||
|
||||
+686
-21
@@ -13,20 +13,25 @@
|
||||
#define MFEM_BOUNDS
|
||||
|
||||
#include "../config/config.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/** @name Piecewise linear bounds of bases
|
||||
\brief Piecewise linear bounds of bases can be used to compute bounds on the grid function in each element. The bounds for the bases are constructed based on the following parameters:
|
||||
\brief Piecewise linear bounds of bases can be used to compute bounds on
|
||||
the grid function in each element. The bounds for the bases are constructed
|
||||
based on the following parameters:
|
||||
|
||||
(i) @b nb: number of bases/nodes in 1D (i.e. polynomial order+1),
|
||||
|
||||
(ii) @b b_type: bases type, 0 - Lagrange interpolants on Gauss-Legendre nodes, 1 - Lagrange interpolants on Gauss-Lobatto-Legendre nodes, and
|
||||
(ii) @b b_type: bases type, 0 - Lagrange interpolants on Gauss-Legendre
|
||||
nodes, 1 - Lagrange interpolants on Gauss-Lobatto-Legendre nodes, and
|
||||
2 - Positive/Bernstein bases on uniformly distributed nodes,
|
||||
|
||||
(iii) @b ncp: number of control points used to construct the piecewise linear bounds
|
||||
(iii) @b ncp: number of control points used to construct the piecewise
|
||||
linear bounds
|
||||
|
||||
(iv) @b cp_type: control point distribution. 0 - GL + end-points,
|
||||
1 - Chebyshev.
|
||||
@@ -35,7 +40,9 @@ namespace mfem
|
||||
|
||||
If the user does not specify @b ncp and @b cp_type, the minimum value of
|
||||
@b ncp is used that would bound the bases for the @b cp_type. We default
|
||||
to @b cp_type = 0 as it requires fewer number of points to bound the bases. Typically, @b ncp = 2 @b nb is sufficient to get fairly compact bounds, and increasing @b ncp results in tighter bounds.
|
||||
to @b cp_type = 0 as it requires fewer number of points to bound the bases.
|
||||
Typically, @b ncp = 2 @b nb is sufficient to get fairly compact bounds, and
|
||||
increasing @b ncp results in tighter bounds.
|
||||
|
||||
Finally, only tensor-product elements are currently supported.
|
||||
|
||||
@@ -54,7 +61,9 @@ private:
|
||||
bool proj = true; // Use linear projection to compute bounds.
|
||||
real_t tol = 0.0; // offset bounds to avoid round-off errors
|
||||
Vector nodes, weights, control_points;
|
||||
DenseMatrix lbound, ubound; // nb x ncp matrices with bounds of all bases
|
||||
Vector xhat, what, cphat;
|
||||
DenseMatrix lbound, ubound; // ncp x nb matrices with bounds of all bases
|
||||
DenseMatrix lbound_t, ubound_t; // nb x ncp transposes for device kernel
|
||||
// Some auxillary storage for computing the bounds with Bernstein
|
||||
DenseMatrix basisMatNodes; // Bernstein bases at equispaced nodes
|
||||
DenseMatrix basisMatInt; // Bernstein bases at GLL nodes
|
||||
@@ -80,6 +89,9 @@ private:
|
||||
{3,5,8,9,11,12,13,13,14,15,16}
|
||||
};
|
||||
|
||||
/// Helper function to extract lower or upper bounding matrix
|
||||
DenseMatrix GetBoundingMatrix(int dim, bool is_lower) const;
|
||||
|
||||
public:
|
||||
// Constructor
|
||||
PLBound(const int nb_i, const int ncp_i, const int b_type_i,
|
||||
@@ -92,46 +104,699 @@ public:
|
||||
PLBound(const FiniteElementSpace *fes,
|
||||
const int ncp_i = -1, const int cp_type_i = 0);
|
||||
|
||||
// Get minimum number of control points needed to bound the given bases
|
||||
/// Get minimum number of control points needed to bound the given bases
|
||||
int GetMinimumPointsForGivenBases(int nb_i, int b_type_i,
|
||||
int cp_type_i) const;
|
||||
|
||||
// Print information about the bounds
|
||||
/// Print information about the bounds
|
||||
void Print(std::ostream &outp = mfem::out) const;
|
||||
|
||||
// Enable (default) or disable linear projection before bounding.
|
||||
// This projection increases the computational cost but results in tighter
|
||||
// bounds.
|
||||
void SetProjectionFlagForBounding(bool proj_) { proj = proj_; }
|
||||
/** @brief Enable (default) or disable linear projection before bounding.
|
||||
*
|
||||
* @details This projection increases the computational cost but results in
|
||||
* tighter bounds.
|
||||
*/
|
||||
void SetProjectionFlagForBounding(bool proj_)
|
||||
{
|
||||
proj = proj_;
|
||||
}
|
||||
|
||||
/// Compute piecewise linear bounds for the lexicographically-ordered
|
||||
/// coefficients in @a coeff in 1D/2D/3D.
|
||||
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
|
||||
* nodal coefficients in @a coeff in 1D/2D/3D.
|
||||
*
|
||||
* @param[in] rdim The spatial dimension of the element (1, 2, or 3).
|
||||
* @param[in] coeff The vector of lexicographically-ordered coefficients.
|
||||
* Should be of size nb^rdim, where nb is the number of
|
||||
* bases/nodes in 1D. These coefficients must correspond
|
||||
* to the bases type and number of bases, used in the
|
||||
* constructor of PLBound.
|
||||
*
|
||||
* @param[out] intmin The vector of minimum bound for all control points.
|
||||
* @param[out] intmax The vector of maximum bound for all control points.
|
||||
* Both intmin and intmax are of size ncp^rdim, where
|
||||
* ncp is the number of control points in 1D, and are
|
||||
* ordered lexicographically.
|
||||
*/
|
||||
void GetNDBounds(const int rdim, const Vector &coeff,
|
||||
Vector &intmin, Vector &intmax) const;
|
||||
|
||||
/// Get number of control points used to compute the bounds.
|
||||
int GetNControlPoints() const { return ncp; }
|
||||
|
||||
/// Get the underlying 1D basis type.
|
||||
int GetBasisType() const { return b_type; }
|
||||
|
||||
/// Get 1D control point locations (lexicographic order) in [0,1].
|
||||
const Vector &GetControlPoints() const { return control_points; }
|
||||
|
||||
/** @brief Compute element-wise bounds from a lexicographic E-vector.
|
||||
*
|
||||
* @details The expected layout of @a e_vec is `ND x VDIM x NE`, where
|
||||
* `ND = nb^rdim`, `VDIM = fes_vdim`, and `NE` is the number of elements.
|
||||
* The output layout matches GridFunction::GetElementBounds:
|
||||
* `NE x active_vdim`, with the element index varying fastest.
|
||||
*/
|
||||
void GetElementBoundsKernel(const int rdim, const int fes_vdim,
|
||||
const Vector &e_vec, Vector &lower,
|
||||
Vector &upper, const int vdim = 0) const;
|
||||
|
||||
/** @brief Get lower and upper bounding matrix (ncp^dim x nb^dim)
|
||||
*
|
||||
* @details The matrices can be used to compute the bounds at control points
|
||||
* by a simple matrix-vector product with the
|
||||
* lexicographically-ordered nodal coefficients.
|
||||
* The resulting output is also lexicographically-ordered.
|
||||
*
|
||||
* @note These matrices do not account for the linear projection step that
|
||||
* is optionally done in GetNDBounds before bounding the function.
|
||||
*/
|
||||
///@{
|
||||
DenseMatrix GetLowerBoundMatrix(int dim = 1) const;
|
||||
DenseMatrix GetUpperBoundMatrix(int dim = 1) const;
|
||||
///@}
|
||||
|
||||
private:
|
||||
/// Compute piecewise linear bounds for the lexicographically-ordered
|
||||
/// coefficients in @a coeff in 1D.
|
||||
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
|
||||
* nodal coefficients in @a coeff in 1D.
|
||||
* See GetNDBounds for details of the input and output parameters.
|
||||
*/
|
||||
void Get1DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
|
||||
|
||||
/// Compute piecewise linear bounds for the lexicographically-ordered
|
||||
/// coefficients in @a coeff in 2D.
|
||||
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
|
||||
* nodal coefficients in @a coeff in 2D.
|
||||
* See GetNDBounds for details of the input and output parameters.
|
||||
*/
|
||||
void Get2DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
|
||||
|
||||
/// Compute piecewise linear bounds for the lexicographically-ordered
|
||||
/// coefficients in @a coeff in 3D.
|
||||
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
|
||||
* nodal coefficients in @a coeff in 3D.
|
||||
* See GetNDBounds for details of the input and output parameters.
|
||||
*/
|
||||
void Get3DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
|
||||
|
||||
/// Setup matrix used to compute values at given 1D locations in [0,1]
|
||||
/// for Bernstein bases.
|
||||
/** @brief Setup matrix used to compute values at given 1D locations in [0,1]
|
||||
* for Bernstein bases.
|
||||
*/
|
||||
void SetupBernsteinBasisMat(DenseMatrix &basisMat, Vector &nodesBern) const;
|
||||
|
||||
void Setup(const int nb_i, const int ncp_i, const int b_type_i,
|
||||
const int cp_type_i, const real_t tol_i);
|
||||
};
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
struct PLBoundDeviceData
|
||||
{
|
||||
int nb;
|
||||
int ncp;
|
||||
const real_t *xhat;
|
||||
const real_t *what;
|
||||
const real_t *cphat;
|
||||
const real_t *lbound;
|
||||
const real_t *ubound;
|
||||
};
|
||||
|
||||
template<int T_NB = 0, bool T_PROJ = true>
|
||||
inline void GetElementBoundsKernel1D(const PLBoundDeviceData &data,
|
||||
const int fes_vdim,
|
||||
const int ne,
|
||||
const Vector &e_vec,
|
||||
Vector &lower,
|
||||
Vector &upper,
|
||||
const int comp0,
|
||||
const int ncomp)
|
||||
{
|
||||
constexpr int GENERIC_MAX_ND = 32;
|
||||
constexpr int MAX_ND = T_NB ? T_NB : GENERIC_MAX_ND;
|
||||
constexpr int BLOCK_X = 2*MAX_ND;
|
||||
|
||||
const int nd = T_NB ? T_NB : data.nb;
|
||||
MFEM_VERIFY(nd <= MAX_ND,
|
||||
"Device element bounds kernel supports up to 32 "
|
||||
"1D degrees of freedom.");
|
||||
|
||||
const auto E = Reshape(e_vec.Read(), nd, fes_vdim, ne);
|
||||
auto L = Reshape(lower.Write(), ne, ncomp);
|
||||
auto U = Reshape(upper.Write(), ne, ncomp);
|
||||
|
||||
mfem::forall_2D<BLOCK_X>(ne*ncomp, BLOCK_X, 1,
|
||||
[=] MFEM_HOST_DEVICE (int ec)
|
||||
{
|
||||
const int e = ec % ne;
|
||||
const int c = ec / ne;
|
||||
const int vc = comp0 + c;
|
||||
const real_t *coeff = &E(0, vc, e);
|
||||
const int tid = MFEM_THREAD_ID(x);
|
||||
|
||||
MFEM_SHARED real_t sproj[MAX_ND];
|
||||
MFEM_SHARED real_t ssum0[MAX_ND];
|
||||
MFEM_SHARED real_t ssum1[MAX_ND];
|
||||
MFEM_SHARED real_t smin[BLOCK_X];
|
||||
MFEM_SHARED real_t smax[BLOCK_X];
|
||||
MFEM_SHARED real_t sa0;
|
||||
MFEM_SHARED real_t sa1;
|
||||
|
||||
MFEM_FOREACH_THREAD(i, x, nd)
|
||||
{
|
||||
if constexpr (T_PROJ)
|
||||
{
|
||||
const real_t x = data.xhat[i];
|
||||
const real_t w = data.what[i];
|
||||
ssum0[i] = 0.5*coeff[i]*w;
|
||||
ssum1[i] = 1.5*coeff[i]*w*x;
|
||||
}
|
||||
else
|
||||
{
|
||||
ssum0[i] = 0.0;
|
||||
ssum1[i] = 0.0;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(ii, x, 1)
|
||||
{
|
||||
sa0 = 0.0;
|
||||
sa1 = 0.0;
|
||||
for (int i = 0; i < nd; i++)
|
||||
{
|
||||
sa0 += ssum0[i];
|
||||
sa1 += ssum1[i];
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(i, x, nd)
|
||||
{
|
||||
if constexpr (T_PROJ)
|
||||
{
|
||||
const real_t x = data.xhat[i];
|
||||
sproj[i] = coeff[i] - sa0 - sa1*x;
|
||||
}
|
||||
else
|
||||
{
|
||||
sproj[i] = coeff[i];
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
real_t lower_local = HUGE_VAL;
|
||||
real_t upper_local = -HUGE_VAL;
|
||||
MFEM_FOREACH_THREAD(j, x, data.ncp)
|
||||
{
|
||||
real_t lo = 0.0;
|
||||
real_t hi = 0.0;
|
||||
if constexpr (T_PROJ)
|
||||
{
|
||||
const real_t xcp = data.cphat[j];
|
||||
lo = sa0 + sa1*xcp;
|
||||
hi = lo;
|
||||
}
|
||||
|
||||
for (int i = 0; i < nd; i++)
|
||||
{
|
||||
const real_t val = sproj[i];
|
||||
const real_t lv = data.lbound[j + i*data.ncp]*val;
|
||||
const real_t uv = data.ubound[j + i*data.ncp]*val;
|
||||
lo += lv < uv ? lv : uv;
|
||||
hi += lv > uv ? lv : uv;
|
||||
}
|
||||
lower_local = lower_local < lo ? lower_local : lo;
|
||||
upper_local = upper_local > hi ? upper_local : hi;
|
||||
}
|
||||
|
||||
smin[tid] = lower_local;
|
||||
smax[tid] = upper_local;
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(ii, x, 1)
|
||||
{
|
||||
real_t lower_ec = smin[0];
|
||||
real_t upper_ec = smax[0];
|
||||
const int nthreads = MFEM_THREAD_SIZE(x);
|
||||
const int nactive = data.ncp < nthreads ? data.ncp : nthreads;
|
||||
for (int t = 1; t < nactive; t++)
|
||||
{
|
||||
lower_ec = lower_ec < smin[t] ? lower_ec : smin[t];
|
||||
upper_ec = upper_ec > smax[t] ? upper_ec : smax[t];
|
||||
}
|
||||
L(e, c) = lower_ec;
|
||||
U(e, c) = upper_ec;
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_NB = 0, int T_NCP = 0, bool T_PROJ = true>
|
||||
inline void GetElementBoundsKernel2D(const PLBoundDeviceData &data,
|
||||
const int fes_vdim,
|
||||
const int ne,
|
||||
const Vector &e_vec,
|
||||
Vector &lower,
|
||||
Vector &upper,
|
||||
const int comp0,
|
||||
const int ncomp)
|
||||
{
|
||||
constexpr int DEFAULT_MAX_NB = 8;
|
||||
constexpr int DEFAULT_MAX_CP = 3*DEFAULT_MAX_NB;
|
||||
constexpr int MAX_NB = T_NB ? T_NB : DEFAULT_MAX_NB;
|
||||
constexpr int MAX_CP = T_NCP ? T_NCP : DEFAULT_MAX_CP;
|
||||
constexpr int MAX_THREADS = MAX_CP*MAX_CP;
|
||||
|
||||
const int nb = data.nb;
|
||||
const int ncp = data.ncp;
|
||||
const int nd = nb*nb;
|
||||
MFEM_VERIFY(nb <= MAX_NB,
|
||||
"Device 2D element bounds kernel exceeds its compile-time "
|
||||
"1D degree bound.");
|
||||
MFEM_VERIFY(ncp <= MAX_CP,
|
||||
"Device 2D element bounds kernel exceeds its compile-time "
|
||||
"control-point bound.");
|
||||
MFEM_VERIFY(ncp*ncp <= MAX_THREADS,
|
||||
"Device 2D element bounds kernel exceeds its compile-time "
|
||||
"thread-block bound.");
|
||||
|
||||
const auto E = Reshape(e_vec.Read(), nd, fes_vdim, ne);
|
||||
auto L = Reshape(lower.Write(), ne, ncomp);
|
||||
auto U = Reshape(upper.Write(), ne, ncomp);
|
||||
|
||||
mfem::forall_2D<MAX_THREADS>(ne*ncomp, ncp, ncp,
|
||||
[=] MFEM_HOST_DEVICE (int ec)
|
||||
{
|
||||
const int e = ec % ne;
|
||||
const int c = ec / ne;
|
||||
const int vc = comp0 + c;
|
||||
const real_t *coeff = &E(0, vc, e);
|
||||
const int tx = MFEM_THREAD_ID(x);
|
||||
const int ty = MFEM_THREAD_ID(y);
|
||||
|
||||
MFEM_SHARED real_t sproj[MAX_NB*MAX_NB];
|
||||
MFEM_SHARED real_t srow_min[MAX_NB*MAX_CP];
|
||||
MFEM_SHARED real_t srow_max[MAX_NB*MAX_CP];
|
||||
MFEM_SHARED real_t srow_a0[MAX_NB];
|
||||
MFEM_SHARED real_t srow_a1[MAX_NB];
|
||||
MFEM_SHARED real_t sa0[MAX_CP];
|
||||
MFEM_SHARED real_t sa1[MAX_CP];
|
||||
MFEM_SHARED real_t smin[MAX_THREADS];
|
||||
MFEM_SHARED real_t smax[MAX_THREADS];
|
||||
|
||||
// Stage 1a: for each nodal row, form the per-node contributions to the
|
||||
// row-wise linear fit used by the first 1D bounding solve.
|
||||
MFEM_FOREACH_THREAD(jrow, y, nb)
|
||||
{
|
||||
const real_t *row_coeff = coeff + jrow*nb;
|
||||
const int row_ncp_off = jrow*MAX_CP;
|
||||
MFEM_FOREACH_THREAD(i, x, nb)
|
||||
{
|
||||
if constexpr (T_PROJ)
|
||||
{
|
||||
const real_t x = data.xhat[i];
|
||||
const real_t w = data.what[i];
|
||||
srow_min[row_ncp_off + i] = 0.5*row_coeff[i]*w;
|
||||
srow_max[row_ncp_off + i] = 1.5*row_coeff[i]*w*x;
|
||||
}
|
||||
else
|
||||
{
|
||||
srow_min[row_ncp_off + i] = 0.0;
|
||||
srow_max[row_ncp_off + i] = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Stage 1b: reduce the row-wise projection coefficients a0/a1.
|
||||
if constexpr (T_PROJ)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(jrow, y, nb)
|
||||
{
|
||||
const int row_ncp_off = jrow*MAX_CP;
|
||||
real_t a0 = 0.0;
|
||||
real_t a1 = 0.0;
|
||||
MFEM_FOREACH_THREAD(ii, x, 1)
|
||||
{
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
a0 += srow_min[row_ncp_off + i];
|
||||
a1 += srow_max[row_ncp_off + i];
|
||||
}
|
||||
srow_a0[jrow] = a0;
|
||||
srow_a1[jrow] = a1;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
|
||||
// Stage 1c: subtract the row-wise linear fit once and cache the
|
||||
// projected row coefficients for reuse across all x-control points.
|
||||
MFEM_FOREACH_THREAD(jrow, y, nb)
|
||||
{
|
||||
const real_t *row_coeff = coeff + jrow*nb;
|
||||
MFEM_FOREACH_THREAD(i, x, nb)
|
||||
{
|
||||
if constexpr (T_PROJ)
|
||||
{
|
||||
const real_t x = data.xhat[i];
|
||||
sproj[jrow*MAX_NB + i] = row_coeff[i]
|
||||
- srow_a0[jrow] - srow_a1[jrow]*x;
|
||||
}
|
||||
else
|
||||
{
|
||||
sproj[jrow*MAX_NB + i] = row_coeff[i];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Stage 1d: solve the first 1D bounding problem along each nodal row and
|
||||
// store bounds at every x-direction control point.
|
||||
MFEM_FOREACH_THREAD(icp, x, ncp)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(jrow, y, nb)
|
||||
{
|
||||
const int row_cp_off = jrow*ncp;
|
||||
real_t lo = 0.0;
|
||||
real_t hi = 0.0;
|
||||
if constexpr (T_PROJ)
|
||||
{
|
||||
const real_t xcp = data.cphat[icp];
|
||||
lo = srow_a0[jrow] + srow_a1[jrow]*xcp;
|
||||
hi = lo;
|
||||
}
|
||||
for (int i = 0; i < nb; i++)
|
||||
{
|
||||
const real_t val = sproj[jrow*MAX_NB + i];
|
||||
const real_t lv = data.lbound[icp + i*data.ncp]*val;
|
||||
const real_t uv = data.ubound[icp + i*data.ncp]*val;
|
||||
lo += lv < uv ? lv : uv;
|
||||
hi += lv > uv ? lv : uv;
|
||||
}
|
||||
srow_min[row_cp_off + icp] = lo;
|
||||
srow_max[row_cp_off + icp] = hi;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Stage 2a: from the row bounds, form the per-row contributions to the
|
||||
// second 1D projection solve in the y-direction.
|
||||
MFEM_FOREACH_THREAD(icp, x, ncp)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(jrow, y, nb)
|
||||
{
|
||||
const int row_cp_off = jrow*ncp;
|
||||
if constexpr (T_PROJ)
|
||||
{
|
||||
const real_t x = data.xhat[jrow];
|
||||
const real_t w = data.what[jrow];
|
||||
const real_t t = 0.5*(srow_min[row_cp_off + icp] +
|
||||
srow_max[row_cp_off + icp]);
|
||||
smin[row_cp_off + icp] = 0.5*t*w;
|
||||
smax[row_cp_off + icp] = 1.5*t*w*x;
|
||||
}
|
||||
else
|
||||
{
|
||||
smin[row_cp_off + icp] = 0.0;
|
||||
smax[row_cp_off + icp] = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Stage 2b: reduce the y-direction projection coefficients for each
|
||||
// x-control-point column.
|
||||
MFEM_FOREACH_THREAD(jj, y, 1)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(icp, x, ncp)
|
||||
{
|
||||
real_t a0 = 0.0;
|
||||
real_t a1 = 0.0;
|
||||
for (int jrow = 0; jrow < nb; jrow++)
|
||||
{
|
||||
a0 += smin[jrow*ncp + icp];
|
||||
a1 += smax[jrow*ncp + icp];
|
||||
}
|
||||
sa0[icp] = a0;
|
||||
sa1[icp] = a1;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Stage 2c: subtract the y-direction linear fit from the intermediate
|
||||
// row bounds so the final tensor-product bound uses the perturbation.
|
||||
if constexpr (T_PROJ)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(icp, x, ncp)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(jrow, y, nb)
|
||||
{
|
||||
const int row_cp_off = jrow*ncp;
|
||||
const real_t x = data.xhat[jrow];
|
||||
const real_t t = sa0[icp] + sa1[icp]*x;
|
||||
srow_min[row_cp_off + icp] -= t;
|
||||
srow_max[row_cp_off + icp] -= t;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Stage 3: each thread now owns one 2D control point (icp, kcp) and
|
||||
// accumulates its final lower/upper bound from the row-bound data.
|
||||
MFEM_FOREACH_THREAD(icp, x, ncp)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(kcp, y, ncp)
|
||||
{
|
||||
real_t lo = 0.0;
|
||||
real_t hi = 0.0;
|
||||
if constexpr (T_PROJ)
|
||||
{
|
||||
const real_t xcp = data.cphat[kcp];
|
||||
lo = sa0[icp] + sa1[icp]*xcp;
|
||||
hi = lo;
|
||||
}
|
||||
for (int jrow = 0; jrow < nb; jrow++)
|
||||
{
|
||||
const real_t w0 = srow_min[jrow*ncp + icp];
|
||||
const real_t w1 = srow_max[jrow*ncp + icp];
|
||||
const real_t lb = data.lbound[kcp + jrow*data.ncp];
|
||||
const real_t ub = data.ubound[kcp + jrow*data.ncp];
|
||||
const real_t v0 = lb*w0;
|
||||
const real_t v1 = ub*w0;
|
||||
const real_t v2 = lb*w1;
|
||||
const real_t v3 = ub*w1;
|
||||
real_t vlo = v0 < v1 ? v0 : v1;
|
||||
real_t vhi = v0 > v1 ? v0 : v1;
|
||||
vlo = vlo < v2 ? vlo : v2;
|
||||
vlo = vlo < v3 ? vlo : v3;
|
||||
vhi = vhi > v2 ? vhi : v2;
|
||||
vhi = vhi > v3 ? vhi : v3;
|
||||
lo += vlo;
|
||||
hi += vhi;
|
||||
}
|
||||
const int slot = kcp*ncp + icp;
|
||||
smin[slot] = lo;
|
||||
smax[slot] = hi;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
const int lane = ty*ncp + tx;
|
||||
const int nactive = ncp*ncp;
|
||||
const int nthreads = MFEM_THREAD_SIZE(x)*MFEM_THREAD_SIZE(y);
|
||||
|
||||
// Reduce all 2D control-point bounds to one lower/upper pair per
|
||||
// (element, component).
|
||||
if (nthreads == 1)
|
||||
{
|
||||
if (tx == 0 && ty == 0)
|
||||
{
|
||||
real_t lower_ec = smin[0];
|
||||
real_t upper_ec = smax[0];
|
||||
for (int t = 1; t < nactive; t++)
|
||||
{
|
||||
lower_ec = lower_ec < smin[t] ? lower_ec : smin[t];
|
||||
upper_ec = upper_ec > smax[t] ? upper_ec : smax[t];
|
||||
}
|
||||
L(e, c) = lower_ec;
|
||||
U(e, c) = upper_ec;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int stride = (nactive + 1)/2; stride > 0;
|
||||
stride = (stride + 1)/2)
|
||||
{
|
||||
if (lane < stride && lane + stride < nactive)
|
||||
{
|
||||
smin[lane] = smin[lane] < smin[lane + stride] ?
|
||||
smin[lane] : smin[lane + stride];
|
||||
smax[lane] = smax[lane] > smax[lane + stride] ?
|
||||
smax[lane] : smax[lane + stride];
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
if (stride == 1) { break; }
|
||||
}
|
||||
|
||||
if (lane == 0)
|
||||
{
|
||||
L(e, c) = smin[0];
|
||||
U(e, c) = smax[0];
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
} // namespace internal
|
||||
|
||||
inline void PLBound::GetElementBoundsKernel(const int rdim, const int fes_vdim,
|
||||
const Vector &e_vec,
|
||||
Vector &lower, Vector &upper,
|
||||
const int vdim) const
|
||||
{
|
||||
MFEM_VERIFY(b_type != BasisType::Positive,
|
||||
"Bernstein device bounds are not implemented.");
|
||||
if (rdim == 3)
|
||||
{
|
||||
MFEM_ABORT("Device element bounds kernel currently only supports 1D/2D.");
|
||||
}
|
||||
MFEM_VERIFY(rdim == 1 || rdim == 2, "Invalid element dimension.");
|
||||
MFEM_VERIFY(vdim >= -1 && vdim <= fes_vdim, "Invalid vector component.");
|
||||
const int nd = static_cast<int>(std::pow(nb, rdim));
|
||||
const int ne = e_vec.Size()/(nd*fes_vdim);
|
||||
const int ncomp = (vdim > 0) ? 1 : fes_vdim;
|
||||
|
||||
lower.SetSize(ne*ncomp, e_vec);
|
||||
upper.SetSize(ne*ncomp, e_vec);
|
||||
lower.UseDevice(true);
|
||||
upper.UseDevice(true);
|
||||
|
||||
if (!proj)
|
||||
{
|
||||
MFEM_ABORT("Device element bounds kernel currently requires projection "
|
||||
"enabled.");
|
||||
}
|
||||
|
||||
const real_t *dxhat = xhat.Read();
|
||||
const real_t *dwhat = what.Read();
|
||||
const real_t *dcphat = cphat.Read();
|
||||
const real_t *dlbound = lbound.Read();
|
||||
const real_t *dubound = ubound.Read();
|
||||
|
||||
internal::PLBoundDeviceData data
|
||||
{
|
||||
nb,
|
||||
ncp,
|
||||
dxhat,
|
||||
dwhat,
|
||||
dcphat,
|
||||
dlbound,
|
||||
dubound
|
||||
};
|
||||
|
||||
const int comp0 = (vdim > 0) ? (vdim - 1) : 0;
|
||||
|
||||
if (rdim == 1)
|
||||
{
|
||||
switch (nb)
|
||||
{
|
||||
case 2: return internal::GetElementBoundsKernel1D<2, true>(data, fes_vdim, ne,
|
||||
e_vec, lower, upper,
|
||||
comp0, ncomp);
|
||||
case 3: return internal::GetElementBoundsKernel1D<3, true>(data, fes_vdim, ne,
|
||||
e_vec, lower, upper,
|
||||
comp0, ncomp);
|
||||
case 4: return internal::GetElementBoundsKernel1D<4, true>(data, fes_vdim, ne,
|
||||
e_vec, lower, upper,
|
||||
comp0, ncomp);
|
||||
case 5: return internal::GetElementBoundsKernel1D<5, true>(data, fes_vdim, ne,
|
||||
e_vec, lower, upper,
|
||||
comp0, ncomp);
|
||||
case 6: return internal::GetElementBoundsKernel1D<6, true>(data, fes_vdim, ne,
|
||||
e_vec, lower, upper,
|
||||
comp0, ncomp);
|
||||
case 7: return internal::GetElementBoundsKernel1D<7, true>(data, fes_vdim, ne,
|
||||
e_vec, lower, upper,
|
||||
comp0, ncomp);
|
||||
case 8: return internal::GetElementBoundsKernel1D<8, true>(data, fes_vdim, ne,
|
||||
e_vec, lower, upper,
|
||||
comp0, ncomp);
|
||||
case 9: return internal::GetElementBoundsKernel1D<9, true>(data, fes_vdim, ne,
|
||||
e_vec, lower, upper,
|
||||
comp0, ncomp);
|
||||
case 10: return internal::GetElementBoundsKernel1D<10, true>(data, fes_vdim, ne,
|
||||
e_vec, lower, upper,
|
||||
comp0, ncomp);
|
||||
default: return internal::GetElementBoundsKernel1D<0, true>(data, fes_vdim, ne,
|
||||
e_vec, lower, upper,
|
||||
comp0, ncomp);
|
||||
}
|
||||
}
|
||||
#define MFEM_PLBOUND_2D_DISPATCH(NB, NCP) \
|
||||
return internal::GetElementBoundsKernel2D<NB, NCP, true>(data, fes_vdim, ne, \
|
||||
e_vec, lower, upper, \
|
||||
comp0, ncomp)
|
||||
switch (nb)
|
||||
{
|
||||
case 2:
|
||||
switch (ncp)
|
||||
{
|
||||
case 4: MFEM_PLBOUND_2D_DISPATCH(2, 4);
|
||||
case 6: MFEM_PLBOUND_2D_DISPATCH(2, 6);
|
||||
case 8: MFEM_PLBOUND_2D_DISPATCH(2, 8);
|
||||
}
|
||||
break;
|
||||
case 3:
|
||||
switch (ncp)
|
||||
{
|
||||
case 6: MFEM_PLBOUND_2D_DISPATCH(3, 6);
|
||||
case 9: MFEM_PLBOUND_2D_DISPATCH(3, 9);
|
||||
case 12: MFEM_PLBOUND_2D_DISPATCH(3, 12);
|
||||
}
|
||||
break;
|
||||
case 4:
|
||||
switch (ncp)
|
||||
{
|
||||
case 8: MFEM_PLBOUND_2D_DISPATCH(4, 8);
|
||||
case 12: MFEM_PLBOUND_2D_DISPATCH(4, 12);
|
||||
case 16: MFEM_PLBOUND_2D_DISPATCH(4, 16);
|
||||
}
|
||||
break;
|
||||
case 5:
|
||||
switch (ncp)
|
||||
{
|
||||
case 10: MFEM_PLBOUND_2D_DISPATCH(5, 10);
|
||||
case 15: MFEM_PLBOUND_2D_DISPATCH(5, 15);
|
||||
case 20: MFEM_PLBOUND_2D_DISPATCH(5, 20);
|
||||
}
|
||||
break;
|
||||
case 6:
|
||||
switch (ncp)
|
||||
{
|
||||
case 12: MFEM_PLBOUND_2D_DISPATCH(6, 12);
|
||||
case 18: MFEM_PLBOUND_2D_DISPATCH(6, 18);
|
||||
case 24: MFEM_PLBOUND_2D_DISPATCH(6, 24);
|
||||
}
|
||||
break;
|
||||
case 7:
|
||||
switch (ncp)
|
||||
{
|
||||
case 14: MFEM_PLBOUND_2D_DISPATCH(7, 14);
|
||||
case 21: MFEM_PLBOUND_2D_DISPATCH(7, 21);
|
||||
case 28: MFEM_PLBOUND_2D_DISPATCH(7, 28);
|
||||
}
|
||||
break;
|
||||
case 8:
|
||||
switch (ncp)
|
||||
{
|
||||
case 16: MFEM_PLBOUND_2D_DISPATCH(8, 16);
|
||||
case 24: MFEM_PLBOUND_2D_DISPATCH(8, 24);
|
||||
case 32: MFEM_PLBOUND_2D_DISPATCH(8, 32);
|
||||
}
|
||||
break;
|
||||
}
|
||||
#undef MFEM_PLBOUND_2D_DISPATCH
|
||||
return internal::GetElementBoundsKernel2D<0, 0, true>(data, fes_vdim, ne,
|
||||
e_vec, lower, upper,
|
||||
comp0, ncomp);
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_BOUNDS
|
||||
|
||||
@@ -52,6 +52,9 @@ public:
|
||||
/// Get the time for time dependent coefficients
|
||||
real_t GetTime() { return time; }
|
||||
|
||||
/// Returns dimension of the vector.
|
||||
int GetVDim() { return 1; }
|
||||
|
||||
/** @brief Evaluate the coefficient in the element described by @a T at the
|
||||
point @a ip. */
|
||||
/** @note When this method is called, the caller must make sure that the
|
||||
|
||||
@@ -82,6 +82,25 @@ public:
|
||||
/// underlying #fes
|
||||
int VectorDim() const;
|
||||
|
||||
/// Copy assignment. Only the data of the base class Vector is copied.
|
||||
/** It is assumed that this object and @a rhs use FiniteElementSpace%s that
|
||||
have the same size.
|
||||
|
||||
@note Defining this method overwrites the implicitly defined copy
|
||||
assignment operator. */
|
||||
ComplexGridFunction &operator=(const ComplexGridFunction &rhs)
|
||||
{ return operator=((const Vector &)rhs); }
|
||||
|
||||
/// Copy the data from @a v.
|
||||
/** The size of @a v must be equal to double of the size of the associated
|
||||
FiniteElementSpace #fes. */
|
||||
ComplexGridFunction &operator=(const Vector &v)
|
||||
{
|
||||
MFEM_ASSERT(fes && v.Size() == 2*fes->GetVSize(), "");
|
||||
Vector::operator=(v);
|
||||
return *this;
|
||||
}
|
||||
|
||||
/// Assign constant values to the ComplexGridFunction data.
|
||||
ComplexGridFunction &operator=(const std::complex<real_t> & value)
|
||||
{ *gfr = value.real(); *gfi = value.imag(); return *this; }
|
||||
|
||||
+18
-5
@@ -492,6 +492,8 @@ void VisItDataCollection::SaveRootFile()
|
||||
to_padded_string(cycle, pad_digits_cycle) +
|
||||
".mfem_root";
|
||||
std::ofstream root_file(root_name);
|
||||
MFEM_VERIFY(root_file.is_open(),
|
||||
"Failed to open ofstream " << root_name);
|
||||
root_file << GetVisItRootString();
|
||||
if (!root_file)
|
||||
{
|
||||
@@ -977,7 +979,10 @@ void ParaViewDataCollection::Save()
|
||||
// Save the local part of the mesh and grid functions fields to the local
|
||||
// VTU file. Also save coefficient fields.
|
||||
{
|
||||
std::ofstream os(vtu_prefix + GenerateVTUFileName("proc", myid));
|
||||
std::string os_str = vtu_prefix + GenerateVTUFileName("proc", myid);
|
||||
std::ofstream os(os_str);
|
||||
MFEM_VERIFY(os.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
os.precision(precision);
|
||||
SaveDataVTU(os, levels_of_detail);
|
||||
}
|
||||
@@ -989,7 +994,10 @@ void ParaViewDataCollection::Save()
|
||||
"QuadratureFunction output is not supported for "
|
||||
"ParaViewDataCollection on domain boundary!");
|
||||
const std::string &field_name = qfield.first;
|
||||
std::ofstream os(vtu_prefix + GenerateVTUFileName(field_name, myid));
|
||||
std::string os_str = vtu_prefix + GenerateVTUFileName(field_name, myid);
|
||||
std::ofstream os(os_str);
|
||||
MFEM_VERIFY(os.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
qfield.second->SaveVTU(os, pv_data_format, GetCompressionLevel(), field_name);
|
||||
}
|
||||
|
||||
@@ -1000,7 +1008,10 @@ void ParaViewDataCollection::Save()
|
||||
{
|
||||
// Create the main PVTU file
|
||||
{
|
||||
std::ofstream pvtu_out(vtu_prefix + GeneratePVTUFileName("data"));
|
||||
std::string os_str = vtu_prefix + GeneratePVTUFileName("data");
|
||||
std::ofstream pvtu_out(os_str);
|
||||
MFEM_VERIFY(pvtu_out.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
WritePVTUHeader(pvtu_out);
|
||||
|
||||
// Grid function fields and coefficient fields
|
||||
@@ -1055,8 +1066,10 @@ void ParaViewDataCollection::Save()
|
||||
const std::string &q_field_name = q_field.first;
|
||||
std::string q_fname = GeneratePVTUPath() + "/"
|
||||
+ GeneratePVTUFileName(q_field_name);
|
||||
|
||||
std::ofstream pvtu_out(col_path + "/" + q_fname);
|
||||
std::string os_str = col_path + "/" + q_fname;
|
||||
std::ofstream pvtu_out(os_str);
|
||||
MFEM_VERIFY(pvtu_out.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
WritePVTUHeader(pvtu_out);
|
||||
int vec_dim = q_field.second->GetVDim();
|
||||
pvtu_out << "<PPointData>\n";
|
||||
|
||||
+11
-8
@@ -90,8 +90,8 @@ void map_quadrature_data_to_fields_impl(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor");
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
" for this field descriptor");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -169,8 +169,9 @@ void map_quadrature_data_to_fields_tensor_impl_1d(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor with sum factorization on tensor product elements");
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
"for this field descriptor with sum factorization on"
|
||||
" tensor product elements");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -306,8 +307,9 @@ void map_quadrature_data_to_fields_tensor_impl_2d(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor with sum factorization on tensor product elements");
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
" for this field descriptor with sum factorization on"
|
||||
" tensor product elements");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -492,8 +494,9 @@ void map_quadrature_data_to_fields_tensor_impl_3d(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor with sum factorization on tensor product elements");
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
" for this field descriptor with sum factorization on"
|
||||
" tensor product elements");
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -57,7 +57,7 @@ void DGMassApply(const int e,
|
||||
}
|
||||
else if (DIM == 3)
|
||||
{
|
||||
SmemPAMassApply3D_Element<TD1D,TQ1D,ACCUM>(e, NE, B, pa_data, x, y);
|
||||
SmemPAMassApply3D_Element<TD1D,TQ1D,NBZ,ACCUM>(e, NE, B, pa_data, x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
|
||||
+6
-6
@@ -320,8 +320,8 @@ public:
|
||||
error estimation procedure where the flux averaging is replaced by a global
|
||||
L2 projection (requiring a mass matrix solve).
|
||||
|
||||
The required BilinearFormIntegrator must implement the methods
|
||||
ComputeElementFlux() and ComputeFluxEnergy().
|
||||
The required BilinearFormIntegrator must implement the method
|
||||
ComputeElementFlux().
|
||||
|
||||
Implemented for the parallel case only.
|
||||
*/
|
||||
@@ -357,8 +357,8 @@ protected:
|
||||
|
||||
public:
|
||||
/** @brief Construct a new L2ZienkiewiczZhuEstimator object.
|
||||
@param integ This BilinearFormIntegrator must implement the methods
|
||||
ComputeElementFlux() and ComputeFluxEnergy().
|
||||
@param integ This BilinearFormIntegrator must implement the method
|
||||
ComputeElementFlux().
|
||||
@param sol The solution field whose error is to be estimated.
|
||||
@param flux_fes The L2ZienkiewiczZhuEstimator assumes ownership of this
|
||||
FiniteElementSpace and will call its Update() method when
|
||||
@@ -382,8 +382,8 @@ public:
|
||||
{ }
|
||||
|
||||
/** @brief Construct a new L2ZienkiewiczZhuEstimator object.
|
||||
@param integ This BilinearFormIntegrator must implement the methods
|
||||
ComputeElementFlux() and ComputeFluxEnergy().
|
||||
@param integ This BilinearFormIntegrator must implement the method
|
||||
ComputeElementFlux().
|
||||
@param sol The solution field whose error is to be estimated.
|
||||
@param flux_fes The L2ZienkiewiczZhuEstimator does NOT assume ownership
|
||||
of this FiniteElementSpace; will call its Update() method
|
||||
|
||||
+122
-44
@@ -663,58 +663,59 @@ const
|
||||
#pragma omp critical (DofToQuad)
|
||||
#endif
|
||||
{
|
||||
// If the new Dof2Quad is already present, e.g. added in a previous call
|
||||
// or added by another omp thread, return.
|
||||
// Do not run if the new Dof2Quad is already present, e.g. added in a
|
||||
// previous call or added by another omp thread.
|
||||
if (DofToQuad::SearchArray(dof2quad_array, ir,
|
||||
DofToQuad::LEXICOGRAPHIC_FULL))
|
||||
{ return; }
|
||||
|
||||
// Undo the native ordering which is what FiniteElement::GetDofToQuad
|
||||
// returns.
|
||||
auto *d2q_new = new DofToQuad(d2q);
|
||||
d2q_new->mode = DofToQuad::LEXICOGRAPHIC_FULL;
|
||||
const int nqpt = ir.GetNPoints();
|
||||
|
||||
const int b_dim = (range_type == VECTOR) ? dim : 1;
|
||||
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
DofToQuad::LEXICOGRAPHIC_FULL) == nullptr)
|
||||
{
|
||||
for (int d = 0; d < b_dim; d++)
|
||||
// Undo the native ordering which is what FiniteElement::GetDofToQuad
|
||||
// returns.
|
||||
auto *d2q_new = new DofToQuad(d2q);
|
||||
d2q_new->mode = DofToQuad::LEXICOGRAPHIC_FULL;
|
||||
const int nqpt = ir.GetNPoints();
|
||||
|
||||
const int b_dim = (range_type == VECTOR) ? dim : 1;
|
||||
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
{
|
||||
for (int j = 0; j < dof; j++)
|
||||
for (int d = 0; d < b_dim; d++)
|
||||
{
|
||||
const double val = d2q.B[i + nqpt*(d+b_dim*lex_ordering[j])];
|
||||
d2q_new->B[i+nqpt*(d+b_dim*j)] = val;
|
||||
d2q_new->Bt[j+dof*(i+nqpt*d)] = val;
|
||||
for (int j = 0; j < dof; j++)
|
||||
{
|
||||
const double val = d2q.B[i + nqpt*(d+b_dim*lex_ordering[j])];
|
||||
d2q_new->B[i+nqpt*(d+b_dim*j)] = val;
|
||||
d2q_new->Bt[j+dof*(i+nqpt*d)] = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
const int g_dim = [this]()
|
||||
{
|
||||
switch (deriv_type)
|
||||
const int g_dim = [this]()
|
||||
{
|
||||
case GRAD: return dim;
|
||||
case DIV: return 1;
|
||||
case CURL: return cdim;
|
||||
default: return 0;
|
||||
}
|
||||
}();
|
||||
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
{
|
||||
for (int d = 0; d < g_dim; d++)
|
||||
{
|
||||
for (int j = 0; j < dof; j++)
|
||||
switch (deriv_type)
|
||||
{
|
||||
const double val = d2q.G[i + nqpt*(d+g_dim*lex_ordering[j])];
|
||||
d2q_new->G[i+nqpt*(d+g_dim*j)] = val;
|
||||
d2q_new->Gt[j+dof*(i+nqpt*d)] = val;
|
||||
case GRAD: return dim;
|
||||
case DIV: return 1;
|
||||
case CURL: return cdim;
|
||||
default: return 0;
|
||||
}
|
||||
}();
|
||||
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
{
|
||||
for (int d = 0; d < g_dim; d++)
|
||||
{
|
||||
for (int j = 0; j < dof; j++)
|
||||
{
|
||||
const double val = d2q.G[i + nqpt*(d+g_dim*lex_ordering[j])];
|
||||
d2q_new->G[i+nqpt*(d+g_dim*j)] = val;
|
||||
d2q_new->Gt[j+dof*(i+nqpt*d)] = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
dof2quad_array.Append(d2q_new);
|
||||
}
|
||||
|
||||
dof2quad_array.Append(d2q_new);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1043,9 +1044,50 @@ void VectorFiniteElement::SetDerivMembers()
|
||||
switch (map_type)
|
||||
{
|
||||
case H_DIV:
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
switch (dim)
|
||||
{
|
||||
case 3: // div: 3D H_DIV -> 3D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
case 2: // div: 2D H_DIV -> 2D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_DIV_R2D:
|
||||
switch (dim)
|
||||
{
|
||||
case 2: // div: 2D H_DIV_R2D -> 2D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
case 1: // div: 1D H_DIV_R2D -> 1D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_DIV_R1D:
|
||||
switch (dim)
|
||||
{
|
||||
case 1: // div: 1D H_DIV_R1D -> 1D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_CURL:
|
||||
switch (dim)
|
||||
@@ -1063,13 +1105,49 @@ void VectorFiniteElement::SetDerivMembers()
|
||||
break;
|
||||
case 1:
|
||||
deriv_type = NONE;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
deriv_range_type = UNKNOWN_RANGE_TYPE;
|
||||
deriv_map_type = UNKNOWN_MAP_TYPE;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_CURL_R2D:
|
||||
switch (dim)
|
||||
{
|
||||
case 2:
|
||||
// curl: 2D H_CURL_R2D -> H_DIV_R2D
|
||||
deriv_type = CURL;
|
||||
deriv_range_type = VECTOR;
|
||||
deriv_map_type = H_DIV_R2D;
|
||||
break;
|
||||
case 1:
|
||||
// curl: 1D H_CURL_R2D -> H_DIV_R2D
|
||||
deriv_type = CURL;
|
||||
deriv_range_type = VECTOR;
|
||||
deriv_map_type = H_DIV_R2D;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_CURL_R1D:
|
||||
switch (dim)
|
||||
{
|
||||
case 1:
|
||||
// curl: 1D H_CURL_R1D -> H_DIV_R1D
|
||||
deriv_type = CURL;
|
||||
deriv_range_type = VECTOR;
|
||||
deriv_map_type = H_DIV_R1D;
|
||||
break;
|
||||
case 0:
|
||||
deriv_type = NONE;
|
||||
deriv_range_type = UNKNOWN_RANGE_TYPE;
|
||||
deriv_map_type = UNKNOWN_MAP_TYPE;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid MapType = " << map_type);
|
||||
}
|
||||
|
||||
+31
-3
@@ -295,10 +295,20 @@ public:
|
||||
$ u(x) = (1/w) \hat u(\hat x) $ */
|
||||
H_DIV, /**< For vector fields; preserves surface integrals of the
|
||||
normal component $ u(x) = (J/w) \hat u(\hat x) $ */
|
||||
H_CURL /**< For vector fields; preserves line integrals of the
|
||||
H_CURL, /**< For vector fields; preserves line integrals of the
|
||||
tangential component
|
||||
$ u(x) = J^{-t} \hat u(\hat x) $ (square J),
|
||||
$ u(x) = J(J^t J)^{-1} \hat u(\hat x) $ (general J) */
|
||||
H_DIV_R2D, /**< For 3-component vector fields in 2D; equivalent to a
|
||||
direct sum of an H_DIV basis and an INTEGRAL basis */
|
||||
H_CURL_R2D,/**< For 3-component vector fields in 2D; equivalent to a
|
||||
direct sum of an H_CURL basis and a VALUE basis */
|
||||
H_DIV_R1D, /**< For 3-component vector fields in 1D; equivalent to a
|
||||
direct sum of a VALUE basis and a pair of INTEGRAL
|
||||
bases */
|
||||
H_CURL_R1D /**< For 3-component vector fields in 1D; equivalent to a
|
||||
direct sum of an INTEGRAL basis and a pair of VALUE
|
||||
bases */
|
||||
};
|
||||
|
||||
/** @brief Enumeration for DerivType: defines which derivative method
|
||||
@@ -330,12 +340,28 @@ public:
|
||||
int GetDim() const { return dim; }
|
||||
|
||||
/** @brief Returns the vector dimension for vector-valued finite elements,
|
||||
which is also the dimension of the interpolation operation. */
|
||||
which is also the dimension of the interpolation operation and the
|
||||
width of the DenseMatrix argument in
|
||||
CalcVShape(const IntegrationPoint &ip, DenseMatrix &shape). */
|
||||
int GetRangeDim() const { return vdim; }
|
||||
|
||||
/// Returns the dimension of the curl for vector-valued finite elements.
|
||||
/** @brief Returns the vector dimension, in physical space, for
|
||||
vector-valued finite elements, which is also the width of the
|
||||
DenseMatrix argument in
|
||||
CalcPhysVShape(ElementTransformation &Trans, DenseMatrix &shape). */
|
||||
virtual int GetPhysRangeDim(int /* space_dim */) const { return vdim; }
|
||||
|
||||
/** Returns the dimension of the curl for vector-valued finite elements,
|
||||
which is also the width of the DenseMatrix argument in
|
||||
CalcCurlShape(const IntegrationPoint &ip, DenseMatrix &curl_shape). */
|
||||
int GetCurlDim() const { return cdim; }
|
||||
|
||||
/** Returns the dimension, in physical space, of the curl for vector-valued
|
||||
finite elements, which is also the width of the DenseMatrix argument in
|
||||
CalcPhysCurlShape(ElementTransformation &Trans, DenseMatrix &curl_shape).
|
||||
*/
|
||||
virtual int GetPhysCurlDim(int /* space_dim */) const { return cdim; }
|
||||
|
||||
/// Returns the Geometry::Type of the reference element.
|
||||
Geometry::Type GetGeomType() const { return geom_type; }
|
||||
|
||||
@@ -990,6 +1016,8 @@ protected:
|
||||
public:
|
||||
VectorFiniteElement(int D, Geometry::Type G, int Do, int O, int M,
|
||||
int F = FunctionSpace::Pk);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const override { return space_dim; }
|
||||
};
|
||||
|
||||
/// @brief Class for computing 1D special polynomials and their associated basis
|
||||
|
||||
+1
-1
@@ -589,7 +589,7 @@ void H1_TriangleElement::CalcHessian(const IntegrationPoint &ip,
|
||||
Vector shape_x(p + 1), shape_y(p + 1), shape_l(p + 1);
|
||||
Vector dshape_x(p + 1), dshape_y(p + 1), dshape_l(p + 1);
|
||||
Vector ddshape_x(p + 1), ddshape_y(p + 1), ddshape_l(p + 1);
|
||||
DenseMatrix ddu(dof, dim);
|
||||
DenseMatrix ddu(dof, (dim*(dim+1))/2);
|
||||
#endif
|
||||
|
||||
poly1d.CalcBasis(p, ip.x, shape_x, dshape_x, ddshape_x);
|
||||
|
||||
+4
-4
@@ -2531,7 +2531,7 @@ void ND_FuentesPyramidElement::calcCurlBasis(const int p,
|
||||
|
||||
ND_R1D_PointElement::ND_R1D_PointElement(int p)
|
||||
: VectorFiniteElement(1, Geometry::POINT, 2, p,
|
||||
H_CURL, FunctionSpace::Pk)
|
||||
H_CURL_R1D, FunctionSpace::Pk)
|
||||
{
|
||||
// VectorFiniteElement::SetDerivMembers doesn't support 0D H_CURL elements
|
||||
// so we mimic a 1D element and then correct the dimension here.
|
||||
@@ -2562,7 +2562,7 @@ ND_R1D_SegmentElement::ND_R1D_SegmentElement(const int p,
|
||||
const int cb_type,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 2, p,
|
||||
H_CURL, FunctionSpace::Pk),
|
||||
H_CURL_R1D, FunctionSpace::Pk),
|
||||
dof2tk(dof),
|
||||
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
|
||||
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
|
||||
@@ -2839,7 +2839,7 @@ ND_R2D_SegmentElement::ND_R2D_SegmentElement(const int p,
|
||||
const int cb_type,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, 2 * p + 1, p,
|
||||
H_CURL, FunctionSpace::Pk),
|
||||
H_CURL_R2D, FunctionSpace::Pk),
|
||||
dof2tk(dof),
|
||||
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
|
||||
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
|
||||
@@ -3023,7 +3023,7 @@ void ND_R2D_SegmentElement::Project(VectorCoefficient &vc,
|
||||
ND_R2D_FiniteElement::ND_R2D_FiniteElement(int p, Geometry::Type G, int Do,
|
||||
const real_t *tk_fe)
|
||||
: VectorFiniteElement(2, G, Do, p,
|
||||
H_CURL, FunctionSpace::Pk),
|
||||
H_CURL_R2D, FunctionSpace::Pk),
|
||||
tk(tk_fe),
|
||||
dof_map(dof),
|
||||
dof2tk(dof)
|
||||
|
||||
@@ -663,6 +663,9 @@ public:
|
||||
const int cb_type = BasisType::GaussLobatto,
|
||||
const int ob_type = BasisType::GaussLegendre);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const override { return 2; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 1; }
|
||||
|
||||
void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const override;
|
||||
|
||||
@@ -705,6 +708,9 @@ private:
|
||||
DenseMatrix &I) const;
|
||||
|
||||
public:
|
||||
int GetPhysRangeDim(int space_dim) const override { return 3; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 3; }
|
||||
|
||||
using FiniteElement::CalcVShape;
|
||||
using FiniteElement::CalcPhysCurlShape;
|
||||
|
||||
|
||||
+3
-3
@@ -2006,7 +2006,7 @@ RT_R1D_SegmentElement::RT_R1D_SegmentElement(const int p,
|
||||
const int cb_type,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 4, p + 1,
|
||||
H_DIV, FunctionSpace::Pk),
|
||||
H_DIV_R1D, FunctionSpace::Pk),
|
||||
dof2nk(dof),
|
||||
cbasis1d(poly1d.GetBasis(p + 1, VerifyClosed(cb_type))),
|
||||
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
|
||||
@@ -2281,7 +2281,7 @@ const real_t RT_R2D_SegmentElement::nk[2] = { 0.,1.};
|
||||
RT_R2D_SegmentElement::RT_R2D_SegmentElement(const int p,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, p + 1, p + 1,
|
||||
H_DIV, FunctionSpace::Pk),
|
||||
H_DIV_R2D, FunctionSpace::Pk),
|
||||
dof2nk(dof),
|
||||
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
|
||||
{
|
||||
@@ -2392,7 +2392,7 @@ void RT_R2D_SegmentElement::LocalInterpolation(const VectorFiniteElement &cfe,
|
||||
RT_R2D_FiniteElement::RT_R2D_FiniteElement(int p, Geometry::Type G, int Do,
|
||||
const real_t *nk_fe)
|
||||
: VectorFiniteElement(2, G, Do, p + 1,
|
||||
H_DIV, FunctionSpace::Pk),
|
||||
H_DIV_R2D, FunctionSpace::Pk),
|
||||
nk(nk_fe),
|
||||
dof_map(dof),
|
||||
dof2nk(dof)
|
||||
|
||||
@@ -510,6 +510,9 @@ public:
|
||||
RT_R2D_SegmentElement(const int p,
|
||||
const int ob_type = BasisType::GaussLegendre);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const override { return 2; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 0; }
|
||||
|
||||
void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const override;
|
||||
|
||||
@@ -547,6 +550,9 @@ private:
|
||||
DenseMatrix &I) const;
|
||||
|
||||
public:
|
||||
int GetPhysRangeDim(int space_dim) const override { return 3; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 0; }
|
||||
|
||||
using FiniteElement::CalcVShape;
|
||||
|
||||
void CalcVShape(ElementTransformation &Trans,
|
||||
|
||||
+28
-19
@@ -282,14 +282,7 @@ int FiniteElementSpace::DofToVDof(int dof, int vd, int ndofs_) const
|
||||
void FiniteElementSpace::AdjustVDofs(Array<int> &vdofs)
|
||||
{
|
||||
int n = vdofs.Size(), *vdof = vdofs;
|
||||
for (int i = 0; i < n; i++)
|
||||
{
|
||||
int j;
|
||||
if ((j = vdof[i]) < 0)
|
||||
{
|
||||
vdof[i] = -1-j;
|
||||
}
|
||||
}
|
||||
for (int i = 0; i < n; i++) { vdof[i] = UnsignIndex(vdof[i]); }
|
||||
}
|
||||
|
||||
void FiniteElementSpace::GetElementVDofs(int i, Array<int> &vdofs,
|
||||
@@ -483,13 +476,14 @@ void FiniteElementSpace::ReorderElementToDofTable()
|
||||
for (int k = 0, dof_counter = 0; k < nnz; k++)
|
||||
{
|
||||
const int sdof = J[k]; // signed dof
|
||||
const int dof = (sdof < 0) ? -1-sdof : sdof;
|
||||
const int dof = UnsignIndex(sdof);
|
||||
int new_dof = dof_marker[dof];
|
||||
if (new_dof < 0)
|
||||
{
|
||||
dof_marker[dof] = new_dof = dof_counter++;
|
||||
}
|
||||
J[k] = (sdof < 0) ? -1-new_dof : new_dof; // preserve the sign of sdof
|
||||
// Preserve the sign of sdof
|
||||
J[k] = (sdof < 0) ? FlipIndexSign(new_dof) : new_dof;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -547,7 +541,7 @@ void MarkDofs(const Array<int> &dofs, Array<int> &mark_array)
|
||||
{
|
||||
for (auto d : dofs)
|
||||
{
|
||||
mark_array[d >= 0 ? d : -1 - d] = -1;
|
||||
mark_array[UnsignIndex(d)] = -1;
|
||||
}
|
||||
}
|
||||
|
||||
@@ -931,7 +925,7 @@ void FiniteElementSpace::AddDependencies(
|
||||
if (std::abs(coef) > 1e-12)
|
||||
{
|
||||
const int mdof = master_dofs[j];
|
||||
if (mdof != sdof && mdof != (-1-sdof))
|
||||
if (mdof != sdof && mdof != FlipIndexSign(sdof))
|
||||
{
|
||||
deps.Add(sdof, mdof, coef);
|
||||
}
|
||||
@@ -1024,7 +1018,7 @@ int FiniteElementSpace::GetDegenerateFaceDofs(int index, Array<int> &dofs,
|
||||
// FiniteElementSpace::AddDependencies.
|
||||
|
||||
Array<int> edof;
|
||||
int order = GetEdgeDofs(-1 - index, edof, variant);
|
||||
int order = GetEdgeDofs(FlipIndexSign(index), edof, variant);
|
||||
|
||||
int nv = fec->DofForGeometry(Geometry::POINT);
|
||||
int ne = fec->DofForGeometry(Geometry::SEGMENT);
|
||||
@@ -1710,8 +1704,8 @@ SparseMatrix *FiniteElementSpace::RefinementMatrix_main(
|
||||
|
||||
for (int i = 0; i < fine_ldof; i++)
|
||||
{
|
||||
int r = DofToVDof(dofs[i], vd);
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
const int r = DofToVDof(dofs[i], vd);
|
||||
const int m = UnsignIndex(r);
|
||||
|
||||
if (!mark[m])
|
||||
{
|
||||
@@ -1772,7 +1766,7 @@ SparseMatrix *FiniteElementSpace::VariableOrderRefinementMatrix(
|
||||
for (int i = 0; i < fine_ldof; i++)
|
||||
{
|
||||
const int r = DofToVDof(dofs[i], vd);
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
const int m = UnsignIndex(r);
|
||||
|
||||
if (!mark[m])
|
||||
{
|
||||
@@ -2482,8 +2476,8 @@ SparseMatrix* FiniteElementSpace::DerefinementMatrix(int old_ndofs,
|
||||
{
|
||||
if (!std::isfinite(lR(i, 0))) { continue; }
|
||||
|
||||
int r = DofToVDof(dofs[i], vd);
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
const int r = DofToVDof(dofs[i], vd);
|
||||
const int m = UnsignIndex(r);
|
||||
|
||||
if (is_dg || !mark[m])
|
||||
{
|
||||
@@ -3201,7 +3195,7 @@ void FiniteElementSpace::CalcEdgeFaceVarOrders(
|
||||
else
|
||||
{
|
||||
// degenerate face (i.e., edge-face constraint)
|
||||
slave_orders |= edge_orders[-1 - slave.index];
|
||||
slave_orders |= edge_orders[FlipIndexSign(slave.index)];
|
||||
}
|
||||
}
|
||||
|
||||
@@ -3940,6 +3934,16 @@ const FiniteElement *FiniteElementSpace::GetBE(int i) const
|
||||
return BE;
|
||||
}
|
||||
|
||||
const FiniteElement *FiniteElementSpace::GetTypicalBE() const
|
||||
{
|
||||
if (mesh->GetNBE() > 0) { return GetBE(0); }
|
||||
|
||||
Geometry::Type geom = mesh->GetTypicalFaceGeometry();
|
||||
const FiniteElement *be = fec->FiniteElementForGeometry(geom);
|
||||
MFEM_VERIFY(be != nullptr, "Could not determine a typical BE!");
|
||||
return be;
|
||||
}
|
||||
|
||||
const FiniteElement *FiniteElementSpace::GetFaceElement(int i) const
|
||||
{
|
||||
MFEM_VERIFY(!IsVariableOrder(), "not implemented");
|
||||
@@ -3970,6 +3974,11 @@ const FiniteElement *FiniteElementSpace::GetFaceElement(int i) const
|
||||
return fe;
|
||||
}
|
||||
|
||||
const FiniteElement *FiniteElementSpace::GetTypicalFaceElement() const
|
||||
{
|
||||
return fec->FiniteElementForGeometry(mesh->GetTypicalFaceGeometry());
|
||||
}
|
||||
|
||||
const FiniteElement *FiniteElementSpace::GetEdgeElement(int i,
|
||||
int variant) const
|
||||
{
|
||||
|
||||
+14
-2
@@ -839,7 +839,7 @@ public:
|
||||
Note: For vector-valued elements, the results pads up the range dimension
|
||||
to the spatial dimension. E.g., consider a stack of 5 vector-valued
|
||||
elements each representing 2D vectors, living in a 3 dimensional space.
|
||||
Then this fucntion would give 15, not 10.
|
||||
Then this function would give 15, not 10.
|
||||
*/
|
||||
int GetVectorDim() const;
|
||||
|
||||
@@ -1150,7 +1150,7 @@ public:
|
||||
|
||||
/// Helper to return the DOF associated with a sign encoded DOF
|
||||
static inline int DecodeDof(int dof)
|
||||
{ return (dof >= 0) ? dof : (-1 - dof); }
|
||||
{ return UnsignIndex(dof); }
|
||||
|
||||
/// Helper to determine the DOF and sign of a sign encoded DOF
|
||||
static inline int DecodeDof(int dof, real_t& sign)
|
||||
@@ -1323,12 +1323,24 @@ public:
|
||||
associated with i'th boundary face in the mesh object. */
|
||||
const FiniteElement *GetBE(int i) const;
|
||||
|
||||
/// @brief Return a "typical" boundary element.
|
||||
///
|
||||
/// This can be used in situations where the local mesh partition may be
|
||||
/// empty.
|
||||
const FiniteElement *GetTypicalBE() const;
|
||||
|
||||
/** @brief Returns pointer to the FiniteElement in the FiniteElementCollection
|
||||
associated with i'th face in the mesh object. Faces in this case refer
|
||||
to the MESHDIM-1 primitive so in 2D they are segments and in 1D they are
|
||||
points.*/
|
||||
const FiniteElement *GetFaceElement(int i) const;
|
||||
|
||||
/// @brief Return a "typical" face element.
|
||||
///
|
||||
/// This can be used in situations where the local mesh partition may be
|
||||
/// empty.
|
||||
const FiniteElement *GetTypicalFaceElement() const;
|
||||
|
||||
/** @brief Returns pointer to the FiniteElement in the FiniteElementCollection
|
||||
associated with i'th edge in the mesh object. */
|
||||
const FiniteElement *GetEdgeElement(int i, int variant = 0) const;
|
||||
|
||||
+666
-73
@@ -30,6 +30,7 @@
|
||||
#include <cmath>
|
||||
#include <iostream>
|
||||
#include <algorithm>
|
||||
#include <queue>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -344,27 +345,6 @@ void GridFunction::ComputeFlux(BilinearFormIntegrator &blfi,
|
||||
}
|
||||
}
|
||||
|
||||
int GridFunction::VectorDim() const
|
||||
{
|
||||
const FiniteElement *fe = fes->GetTypicalFE();
|
||||
if (!fe || fe->GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
return fes->GetVDim();
|
||||
}
|
||||
return fes->GetVDim()*std::max(fes->GetMesh()->SpaceDimension(),
|
||||
fe->GetRangeDim());
|
||||
}
|
||||
|
||||
int GridFunction::CurlDim() const
|
||||
{
|
||||
const FiniteElement *fe = fes->GetTypicalFE();
|
||||
if (!fe || fe->GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
return 2 * fes->GetMesh()->SpaceDimension() - 3;
|
||||
}
|
||||
return fes->GetVDim()*fe->GetCurlDim();
|
||||
}
|
||||
|
||||
void GridFunction::GetTrueDofs(Vector &tv) const
|
||||
{
|
||||
const SparseMatrix *R = fes->GetRestrictionMatrix();
|
||||
@@ -2049,6 +2029,18 @@ void GridFunction::AccumulateAndCountBdrValues(
|
||||
Coefficient *coeff[], VectorCoefficient *vcoeff, const Array<int> &attr,
|
||||
Array<int> &values_counter)
|
||||
{
|
||||
if (vcoeff)
|
||||
{
|
||||
MFEM_VERIFY(fes->GetVDim() == vcoeff->GetVDim(),
|
||||
"vcoeff vdim != fes VDim");
|
||||
MFEM_VERIFY(fes->GetTypicalBE()->GetMapType() == FiniteElement::VALUE &&
|
||||
fes->GetTypicalBE()->GetRangeType() ==
|
||||
FiniteElement::SCALAR,
|
||||
"Can only call ProjectBdrCoefficient on scalar value-type "
|
||||
"boundary elements. "
|
||||
"Did you intended to call ProjectBdrCoefficientNormal or "
|
||||
"ProjectBdrCoefficientTangent for vector finite elements?");
|
||||
}
|
||||
Array<int> vdofs;
|
||||
Vector vc;
|
||||
|
||||
@@ -2201,6 +2193,9 @@ void GridFunction::AccumulateAndCountBdrTangentValues(
|
||||
VectorCoefficient &vcoeff, const Array<int> &bdr_attr,
|
||||
Array<int> &values_counter)
|
||||
{
|
||||
MFEM_VERIFY(fes->GetTypicalBE()->GetPhysRangeDim(
|
||||
fes->GetMesh()->SpaceDimension()) == vcoeff.GetVDim(),
|
||||
"vcoeff vdim != PhysRangeDim");
|
||||
const FiniteElement *fe;
|
||||
ElementTransformation *T;
|
||||
Array<int> dofs;
|
||||
@@ -2354,6 +2349,9 @@ void GridFunction::ProjectDeltaCoefficient(DeltaCoefficient &delta_coeff,
|
||||
|
||||
void GridFunction::ProjectCoefficient(Coefficient &coeff, ProjectType type)
|
||||
{
|
||||
MFEM_VERIFY(
|
||||
VectorDim() == 1,
|
||||
"Cannot project scalar Coefficient onto vector GridFunction");
|
||||
DeltaCoefficient *delta_c = dynamic_cast<DeltaCoefficient *>(&coeff);
|
||||
DofTransformation doftrans;
|
||||
Array<int> vdofs;
|
||||
@@ -2629,6 +2627,7 @@ void GridFunction::ProjectCoefficient(
|
||||
void GridFunction::ProjectCoefficient(VectorCoefficient &vcoeff,
|
||||
ProjectType type)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == vcoeff.GetVDim(), "vcoeff vdim != VectorDim()");
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
DofTransformation doftrans;
|
||||
@@ -2944,6 +2943,7 @@ void GridFunction::ProjectCoefficientElementL2(VectorCoefficient &vcoeff)
|
||||
void GridFunction::ProjectCoefficient(
|
||||
VectorCoefficient &vcoeff, Array<int> &dofs)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == vcoeff.GetVDim(), "vcoeff vdim != VectorDim()");
|
||||
int el = -1;
|
||||
ElementTransformation *T = NULL;
|
||||
const FiniteElement *fe = NULL;
|
||||
@@ -2973,6 +2973,7 @@ void GridFunction::ProjectCoefficient(
|
||||
|
||||
void GridFunction::ProjectCoefficient(VectorCoefficient &vcoeff, int attribute)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == vcoeff.GetVDim(), "vcoeff vdim != VectorDim()");
|
||||
int i;
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
@@ -3029,9 +3030,14 @@ void GridFunction::ProjectCoefficient(Coefficient *coeff[])
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff,
|
||||
Array<int> &dof_attr)
|
||||
void GridFunction::ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff, Array<int> &dof_attr)
|
||||
{
|
||||
std::visit([&](auto* c)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == c->GetVDim(), "coeff vdim != VectorDim()");
|
||||
}, coeff);
|
||||
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
|
||||
@@ -3045,7 +3051,10 @@ void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff,
|
||||
{
|
||||
fes->GetElementVDofs(i, vdofs);
|
||||
vals.SetSize(vdofs.Size());
|
||||
fes->GetFE(i)->Project(coeff, *fes->GetElementTransformation(i), vals);
|
||||
std::visit([&](auto* c)
|
||||
{
|
||||
fes->GetFE(i)->Project(*c, *fes->GetElementTransformation(i), vals);
|
||||
}, coeff);
|
||||
|
||||
// the values in shared dofs are determined from the element with maximal
|
||||
// attribute
|
||||
@@ -3061,17 +3070,15 @@ void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff,
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff)
|
||||
{
|
||||
Array<int> dof_attr;
|
||||
ProjectDiscCoefficient(coeff, dof_attr);
|
||||
}
|
||||
|
||||
void GridFunction::ProjectDiscCoefficient(Coefficient &coeff, AvgType type)
|
||||
{
|
||||
// Harmonic (x1 ... xn) = [ (1/x1 + ... + 1/xn) / n ]^-1.
|
||||
// Arithmetic(x1 ... xn) = (x1 + ... + xn) / n.
|
||||
|
||||
MFEM_VERIFY(
|
||||
VectorDim() == 1,
|
||||
"Cannot project a scalar coefficient onto a vector GridFunction");
|
||||
|
||||
Array<int> zones_per_vdof;
|
||||
AccumulateAndCountZones(coeff, type, zones_per_vdof);
|
||||
|
||||
@@ -3081,6 +3088,7 @@ void GridFunction::ProjectDiscCoefficient(Coefficient &coeff, AvgType type)
|
||||
void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff,
|
||||
AvgType type)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == coeff.GetVDim(), "coeff vdim != VectorDim()");
|
||||
Array<int> zones_per_vdof;
|
||||
AccumulateAndCountZones(coeff, type, zones_per_vdof);
|
||||
|
||||
@@ -3136,52 +3144,33 @@ void GridFunction::ProjectBdrCoefficient(Coefficient *coeff[],
|
||||
}
|
||||
|
||||
void GridFunction::ProjectBdrCoefficientNormal(
|
||||
VectorCoefficient &vcoeff, const Array<int> &bdr_attr)
|
||||
Coefficient *coeff, VectorCoefficient *vcoeff, const Array<int> &bdr_attr)
|
||||
{
|
||||
#if 0
|
||||
// implementation for the case when the face dofs are integrals of the
|
||||
// normal component.
|
||||
const FiniteElement *fe;
|
||||
ElementTransformation *T;
|
||||
Array<int> dofs;
|
||||
int dim = vcoeff.GetVDim();
|
||||
Vector vc(dim), nor(dim), lvec, shape;
|
||||
|
||||
for (int i = 0; i < fes->GetNBE(); i++)
|
||||
MFEM_VERIFY(fes->GetVDim() == 1, "fespace VDim != 1");
|
||||
MFEM_VERIFY(fes->GetTypicalBE()->GetRangeType() == FiniteElement::SCALAR &&
|
||||
fes->GetTypicalBE()->GetMapType() == FiniteElement::INTEGRAL,
|
||||
"Not an RT FE space!");
|
||||
if (vcoeff)
|
||||
{
|
||||
if (bdr_attr[fes->GetBdrAttribute(i)-1] == 0)
|
||||
{
|
||||
continue;
|
||||
}
|
||||
fe = fes->GetBE(i);
|
||||
T = fes->GetBdrElementTransformation(i);
|
||||
int intorder = 2*fe->GetOrder(); // !!!
|
||||
const IntegrationRule &ir = IntRules.Get(fe->GetGeomType(), intorder);
|
||||
int nd = fe->GetDof();
|
||||
lvec.SetSize(nd);
|
||||
shape.SetSize(nd);
|
||||
lvec = 0.0;
|
||||
for (int j = 0; j < ir.GetNPoints(); j++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir.IntPoint(j);
|
||||
T->SetIntPoint(&ip);
|
||||
vcoeff.Eval(vc, *T, ip);
|
||||
CalcOrtho(T->Jacobian(), nor);
|
||||
fe->CalcShape(ip, shape);
|
||||
lvec.Add(ip.weight * (vc * nor), shape);
|
||||
}
|
||||
fes->GetBdrElementDofs(i, dofs);
|
||||
SetSubVector(dofs, lvec);
|
||||
MFEM_VERIFY(vcoeff->GetVDim() == fes->GetMesh()->SpaceDimension(),
|
||||
"vcoeff vdim (" << vcoeff->GetVDim()
|
||||
<< ") != SpaceDimension ("
|
||||
<< fes->GetMesh()->SpaceDimension() << ")");
|
||||
}
|
||||
#else
|
||||
|
||||
// implementation for the case when the face dofs are scaled point
|
||||
// values of the normal component.
|
||||
const FiniteElement *fe;
|
||||
ElementTransformation *T;
|
||||
Array<int> dofs;
|
||||
int dim = vcoeff.GetVDim();
|
||||
Vector vc(dim), nor(dim), lvec;
|
||||
Vector vc, nor, lvec;
|
||||
DofTransformation doftrans;
|
||||
if (vcoeff)
|
||||
{
|
||||
const int dim = vcoeff->GetVDim();
|
||||
vc.SetSize(dim);
|
||||
nor.SetSize(dim);
|
||||
}
|
||||
|
||||
for (int i = 0; i < fes->GetNBE(); i++)
|
||||
{
|
||||
@@ -3197,15 +3186,22 @@ void GridFunction::ProjectBdrCoefficientNormal(
|
||||
{
|
||||
const IntegrationPoint &ip = ir.IntPoint(j);
|
||||
T->SetIntPoint(&ip);
|
||||
vcoeff.Eval(vc, *T, ip);
|
||||
CalcOrtho(T->Jacobian(), nor);
|
||||
lvec(j) = (vc * nor);
|
||||
if (coeff)
|
||||
{
|
||||
const real_t c = coeff->Eval(*T, ip);
|
||||
lvec(j) = c * T->Weight();
|
||||
}
|
||||
else if (vcoeff)
|
||||
{
|
||||
vcoeff->Eval(vc, *T, ip);
|
||||
CalcOrtho(T->Jacobian(), nor);
|
||||
lvec(j) = (vc * nor);
|
||||
}
|
||||
}
|
||||
fes->GetBdrElementDofs(i, dofs, doftrans);
|
||||
doftrans.TransformPrimal(lvec);
|
||||
SetSubVector(dofs, lvec);
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
void GridFunction::ProjectBdrCoefficientTangent(
|
||||
@@ -5006,6 +5002,14 @@ real_t ExtrudeCoefficient::Eval(ElementTransformation &T,
|
||||
return sol_in.Eval(*T_in, ip);
|
||||
}
|
||||
|
||||
void VectorExtrudeCoefficient::Eval(Vector &v, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
ElementTransformation *T_in =
|
||||
mesh_in->GetElementTransformation(T.ElementNo / n);
|
||||
T_in->SetIntPoint(&ip);
|
||||
sol_in.Eval(v, *T_in, ip);
|
||||
}
|
||||
|
||||
GridFunction *Extrude1DGridFunction(Mesh *mesh, Mesh *mesh2d,
|
||||
GridFunction *sol, const int ny)
|
||||
@@ -5056,10 +5060,17 @@ GridFunction *Extrude1DGridFunction(Mesh *mesh, Mesh *mesh2d,
|
||||
return NULL;
|
||||
}
|
||||
FiniteElementSpace *solfes2d;
|
||||
// assuming sol is scalar
|
||||
solfes2d = new FiniteElementSpace(mesh2d, solfec2d);
|
||||
const int vdim = sol->FESpace()->GetVDim();
|
||||
solfes2d = new FiniteElementSpace(mesh2d, solfec2d, vdim);
|
||||
sol2d = new GridFunction(solfes2d);
|
||||
sol2d->MakeOwner(solfec2d);
|
||||
if (vdim > 1)
|
||||
{
|
||||
VectorGridFunctionCoefficient vcsol(sol);
|
||||
VectorExtrudeCoefficient vc2d(mesh, vcsol, ny);
|
||||
sol2d->ProjectCoefficient(vc2d);
|
||||
}
|
||||
else
|
||||
{
|
||||
GridFunctionCoefficient csol(sol);
|
||||
ExtrudeCoefficient c2d(mesh, csol, ny);
|
||||
@@ -5117,6 +5128,103 @@ void GridFunction::GetElementBoundsAtControlPoints(const int elem,
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunction::GetElementBoundsAtControlPoints(const int elem,
|
||||
const PLBound &plb,
|
||||
const Vector &ref_range,
|
||||
const int vdim,
|
||||
Vector &lower, Vector &upper,
|
||||
Vector &control_pos) const
|
||||
{
|
||||
const FiniteElement *fe = fes->GetFE(elem);
|
||||
const IntegrationRule ir_in = fe->GetNodes();
|
||||
IntegrationRule ir_new(ir_in.GetNPoints());
|
||||
const int dim = fes->GetMesh()->Dimension();
|
||||
const L2_FECollection *l2fec = dynamic_cast<const L2_FECollection *>
|
||||
(fes->FEColl());
|
||||
|
||||
const TensorBasisElement *tbe =
|
||||
dynamic_cast<const TensorBasisElement *>(fe);
|
||||
MFEM_VERIFY(tbe != NULL, "TensorBasis FiniteElement expected.");
|
||||
|
||||
const Array<int> &dof_map = tbe->GetDofMap();
|
||||
bool lexico = (dof_map.Size() == 0);
|
||||
bool bern = (tbe->GetBasisType() == BasisType::Positive);
|
||||
bool h1 = (l2fec == nullptr);
|
||||
|
||||
Vector loc_data; // gridfunction values
|
||||
// Construct an integration rule to evaluate the gridfunction in
|
||||
// subinterval.
|
||||
for (int i = 0; i < ir_in.GetNPoints(); i++)
|
||||
{
|
||||
IntegrationPoint &ip_new = ir_new.IntPoint(i);
|
||||
const IntegrationPoint &ip_old =
|
||||
ir_in.IntPoint((lexico || bern) ? i : dof_map[i]);
|
||||
Vector ip_coord(dim);
|
||||
ip_old.Get(ip_coord.GetData(), dim);
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
ip_coord(d) = ref_range(d) +
|
||||
(ref_range(dim+d) - ref_range(d)) * ip_coord(d);
|
||||
}
|
||||
ip_new.Set(ip_coord.GetData(), dim);
|
||||
}
|
||||
GetValues(elem, ir_new, loc_data, vdim);
|
||||
// At this point, the loc_data contains function values ordered
|
||||
// lexicographically, unless we are using Bernstein bases.
|
||||
// For Bernstein, we need to project and get coefficients first.
|
||||
|
||||
// For bernstein, we get coefficients corresponding to these function values
|
||||
if (bern)
|
||||
{
|
||||
int bt = 4; // BasisType::ClosedUniform
|
||||
int o = fe->GetOrder();
|
||||
DenseMatrix projmat;
|
||||
NodalTensorFiniteElement *ntfe = nullptr;
|
||||
if (dim == 1)
|
||||
{
|
||||
if (h1) { ntfe = new H1_SegmentElement(o, bt); }
|
||||
else { ntfe = new L2_SegmentElement(o, bt); }
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
if (h1) { ntfe = new H1_QuadrilateralElement(o, bt); }
|
||||
else { ntfe = new L2_QuadrilateralElement(o, bt); }
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
if (h1) { ntfe = new H1_HexahedronElement(o, bt); }
|
||||
else { ntfe = new L2_HexahedronElement(o, bt); }
|
||||
}
|
||||
// projection matrix from H1 to Positive
|
||||
ElementTransformation *eltran = fes->GetElementTransformation(elem);
|
||||
fe->Project(*ntfe, *eltran, projmat);
|
||||
Vector loc_data_temp(loc_data.Size());
|
||||
projmat.Mult(loc_data, loc_data_temp);
|
||||
for (int i = 0; i < dof_map.Size(); i++)
|
||||
{
|
||||
loc_data(i) = loc_data_temp(dof_map[i]);
|
||||
}
|
||||
if (dof_map.Size() == 0) { loc_data = loc_data_temp; }
|
||||
delete ntfe;
|
||||
}
|
||||
|
||||
// Get bounds at control points
|
||||
plb.GetNDBounds(dim, loc_data, lower, upper);
|
||||
|
||||
// Save control point positions
|
||||
int ncp = plb.GetNControlPoints();
|
||||
control_pos.SetSize(dim * ncp);
|
||||
const Vector control_pos_1D = plb.GetControlPoints();
|
||||
for (int i = 0; i < ncp; i++)
|
||||
{
|
||||
for (int d = 0; d < dim; d++)
|
||||
{
|
||||
control_pos(i + d*ncp) =
|
||||
ref_range(d) + (ref_range(dim+d)-ref_range(d))*control_pos_1D(i);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunction::GetElementBounds(const int elem, const PLBound &plb,
|
||||
Vector &lower, Vector &upper,
|
||||
const int vdim) const
|
||||
@@ -5144,6 +5252,30 @@ void GridFunction::GetElementBounds(const PLBound &plb,
|
||||
Vector &lower, Vector &upper,
|
||||
const int vdim) const
|
||||
{
|
||||
if (UseDevice() && Device::Allows(Backend::DEVICE_MASK) &&
|
||||
plb.GetBasisType() != BasisType::Positive &&
|
||||
UsesTensorBasis(*fes))
|
||||
{
|
||||
const FiniteElement &fe = *fes->GetTypicalFE();
|
||||
const int rdim = fe.GetDim();
|
||||
const int fes_dim = fes->GetVDim();
|
||||
const int nel = fes->GetNE();
|
||||
const int nd = fe.GetDof();
|
||||
|
||||
Vector e_vec(nd*fes_dim*nel, Device::GetDeviceMemoryType());
|
||||
e_vec.UseDevice(true);
|
||||
const ElementRestrictionOperator *elem_restr =
|
||||
fes->GetElementRestriction(ElementDofOrdering::LEXICOGRAPHIC);
|
||||
MFEM_VERIFY(elem_restr != nullptr,
|
||||
"Element restriction is required for device bounds.");
|
||||
elem_restr->Mult(*this, e_vec);
|
||||
|
||||
plb.GetElementBoundsKernel(rdim, fes_dim, e_vec, lower, upper, vdim);
|
||||
lower.HostRead();
|
||||
upper.HostRead();
|
||||
return;
|
||||
}
|
||||
|
||||
int nel = fes->GetNE();
|
||||
int fes_dim = fes->GetVDim();
|
||||
lower.SetSize(nel*(vdim > 0 ? 1 :fes_dim));
|
||||
@@ -5197,6 +5329,467 @@ PLBound GridFunction::GetBounds(Vector &lower, Vector &upper,
|
||||
return plb;
|
||||
}
|
||||
|
||||
struct IntervalNode
|
||||
{
|
||||
real_t val_min;
|
||||
real_t val_max;
|
||||
Array<IntervalNode *> child;
|
||||
IntervalNode(real_t vmin, real_t vmax)
|
||||
: val_min(vmin), val_max(vmax)
|
||||
{
|
||||
child.SetSize(0);
|
||||
}
|
||||
void AddChild(IntervalNode *ch) { child.Append(ch); }
|
||||
real_t GetChildMinLower()
|
||||
{
|
||||
if (child.Size() == 0)
|
||||
{
|
||||
return val_min;
|
||||
}
|
||||
real_t valmin = numeric_limits<real_t>::max();
|
||||
for (int i = 0; i < child.Size(); i++)
|
||||
{
|
||||
real_t candidate = child[i]->GetChildMinLower();
|
||||
valmin = std::min(valmin, candidate);
|
||||
}
|
||||
return valmin;
|
||||
}
|
||||
real_t GetChildMinUpper()
|
||||
{
|
||||
if (child.Size() == 0)
|
||||
{
|
||||
return val_max;
|
||||
}
|
||||
real_t valmax = numeric_limits<real_t>::max();
|
||||
for (int i = 0; i < child.Size(); i++)
|
||||
{
|
||||
real_t candidate = child[i]->GetChildMinUpper();
|
||||
valmax = std::min(valmax, candidate);
|
||||
}
|
||||
return valmax;
|
||||
}
|
||||
real_t GetChildMaxLower()
|
||||
{
|
||||
if (child.Size() == 0)
|
||||
{
|
||||
return val_min;
|
||||
}
|
||||
real_t valmin = numeric_limits<real_t>::lowest();
|
||||
for (int i = 0; i < child.Size(); i++)
|
||||
{
|
||||
real_t candidate = child[i]->GetChildMaxLower();
|
||||
valmin = std::max(valmin, candidate);
|
||||
}
|
||||
return valmin;
|
||||
}
|
||||
real_t GetChildMaxUpper()
|
||||
{
|
||||
if (child.Size() == 0)
|
||||
{
|
||||
return val_max;
|
||||
}
|
||||
real_t valmax = numeric_limits<real_t>::lowest();
|
||||
for (int i = 0; i < child.Size(); i++)
|
||||
{
|
||||
real_t candidate = child[i]->GetChildMaxUpper();
|
||||
valmax = std::max(valmax, candidate);
|
||||
}
|
||||
return valmax;
|
||||
}
|
||||
void DeleteChildren()
|
||||
{
|
||||
for (int i = 0; i < child.Size(); i++)
|
||||
{
|
||||
child[i]->DeleteChildren();
|
||||
delete child[i];
|
||||
}
|
||||
child.SetSize(0);
|
||||
}
|
||||
};
|
||||
|
||||
struct SearchInterval
|
||||
{
|
||||
Vector ref_range;
|
||||
int depth;
|
||||
IntervalNode *node;
|
||||
SearchInterval(const Vector &ref_range_in, int d, IntervalNode *n)
|
||||
: ref_range(ref_range_in), depth(d), node(n)
|
||||
{ }
|
||||
};
|
||||
|
||||
struct IntervalCompareMin
|
||||
{
|
||||
bool operator()(const SearchInterval *a, const SearchInterval *b) const
|
||||
{
|
||||
return a->node->val_min > b->node->val_min;
|
||||
}
|
||||
};
|
||||
|
||||
struct IntervalCompareMax
|
||||
{
|
||||
bool operator()(const SearchInterval *a, const SearchInterval *b) const
|
||||
{
|
||||
return a->node->val_max < b->node->val_max;
|
||||
}
|
||||
};
|
||||
|
||||
std::pair<real_t, real_t> GridFunction::EstimateFunctionMinimum(
|
||||
const int elem, const PLBound &plb, const int vdim,
|
||||
const int max_depth, const real_t tol) const
|
||||
{
|
||||
real_t min_threshold = std::numeric_limits<real_t>::max();
|
||||
return EstimateFunctionMinimum(elem, plb, vdim, max_depth, tol,
|
||||
min_threshold);
|
||||
}
|
||||
|
||||
std::pair<real_t, real_t> GridFunction::EstimateFunctionMinimum(
|
||||
const int elem, const PLBound &plb, const int vdim,
|
||||
const int max_depth, const real_t tol, real_t &min_threshold) const
|
||||
{
|
||||
const int dim = this->FESpace()->GetMesh()->Dimension();
|
||||
const int ncp = plb.GetNControlPoints();
|
||||
Vector pos_range(2*dim); pos_range = 0.0;
|
||||
for (int d = 0; d < dim; d++) { pos_range(d+dim) = 1.0; }
|
||||
Vector lower, upper, cp_ref_loc;
|
||||
|
||||
GetElementBoundsAtControlPoints(elem, plb, lower, upper, vdim);
|
||||
real_t val_min = lower.Min();
|
||||
real_t val_max = upper.Min();
|
||||
|
||||
min_threshold = std::min(min_threshold, val_max);
|
||||
|
||||
// Pruning: if the element's lower bound is greater than the current global
|
||||
// upper bound, this element cannot contain the global minimum.
|
||||
if (val_min >= min_threshold)
|
||||
{
|
||||
return std::make_pair(val_min, val_max);
|
||||
}
|
||||
|
||||
if (val_min == val_max || max_depth == 0)
|
||||
{
|
||||
min_threshold = std::min(min_threshold, val_min);
|
||||
return std::make_pair(val_min, val_max);
|
||||
}
|
||||
real_t abs_tol = tol*(val_max-val_min);
|
||||
|
||||
IntervalNode *initial_node = new IntervalNode(val_min, val_max);
|
||||
SearchInterval *initial_interval = new SearchInterval(pos_range, 0,
|
||||
initial_node);
|
||||
|
||||
std::priority_queue<SearchInterval*,
|
||||
std::vector<SearchInterval*>, IntervalCompareMin> pq;
|
||||
pq.push(initial_interval);
|
||||
|
||||
real_t min_upper_bound = upper.Min();
|
||||
real_t min_lower_bound = lower.Min();
|
||||
|
||||
while (!pq.empty())
|
||||
{
|
||||
SearchInterval *current = pq.top();
|
||||
pq.pop();
|
||||
int curr_depth = current->depth;
|
||||
|
||||
// Reached max depth or this interval cannot contain the global minimum
|
||||
if (current->node->val_min >= min_threshold || curr_depth >= max_depth)
|
||||
{
|
||||
delete current;
|
||||
continue;
|
||||
}
|
||||
|
||||
min_lower_bound = initial_node->GetChildMinLower();
|
||||
if (min_upper_bound - min_lower_bound < abs_tol)
|
||||
{
|
||||
delete current;
|
||||
break;
|
||||
}
|
||||
|
||||
// Subdivide the interval and get bounds on it
|
||||
GetElementBoundsAtControlPoints(elem, plb, current->ref_range,
|
||||
vdim, lower, upper, cp_ref_loc);
|
||||
|
||||
// process the bounds and create sub-intervals
|
||||
for (int k = 0; k < (dim == 3 ? ncp-1 : 1); k++)
|
||||
{
|
||||
for (int j = 0; j < (dim >= 2 ? ncp-1 : 1); j++)
|
||||
{
|
||||
for (int i = 0; i < ncp-1; i++)
|
||||
{
|
||||
real_t lv = 0.0, uv = 0.0;
|
||||
if (dim == 1)
|
||||
{
|
||||
lv = std::min(lower(i), lower(i+1));
|
||||
uv = std::min(upper(i), upper(i+1));
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
lv = std::min({lower(i + j*ncp), lower((i+1) + j*ncp),
|
||||
lower(i + (j+1)*ncp),
|
||||
lower((i+1) + (j+1)*ncp)});
|
||||
uv = std::min({upper(i + j*ncp), upper((i+1) + j*ncp),
|
||||
upper(i + (j+1)*ncp),
|
||||
upper((i+1) + (j+1)*ncp)});
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
lv = std::min({lower(i + j*ncp + k*ncp*ncp),
|
||||
lower((i+1) + j*ncp + k*ncp*ncp),
|
||||
lower(i + (j+1)*ncp + k*ncp*ncp),
|
||||
lower((i+1) + (j+1)*ncp + k*ncp*ncp),
|
||||
lower(i + j*ncp + (k+1)*ncp*ncp),
|
||||
lower((i+1) + j*ncp + (k+1)*ncp*ncp),
|
||||
lower(i + (j+1)*ncp + (k+1)*ncp*ncp),
|
||||
lower((i+1) + (j+1)*ncp + (k+1)*ncp*ncp)});
|
||||
uv = std::min({upper(i + j*ncp + k*ncp*ncp),
|
||||
upper((i+1) + j*ncp + k*ncp*ncp),
|
||||
upper(i + (j+1)*ncp + k*ncp*ncp),
|
||||
upper((i+1) + (j+1)*ncp + k*ncp*ncp),
|
||||
upper(i + j*ncp + (k+1)*ncp*ncp),
|
||||
upper((i+1) + j*ncp + (k+1)*ncp*ncp),
|
||||
upper(i + (j+1)*ncp + (k+1)*ncp*ncp),
|
||||
upper((i+1) + (j+1)*ncp + (k+1)*ncp*ncp)});
|
||||
}
|
||||
IntervalNode *child_node = new IntervalNode(lv, uv);
|
||||
current->node->AddChild(child_node);
|
||||
|
||||
if (lv < min_threshold)
|
||||
{
|
||||
min_upper_bound = std::min(min_upper_bound, uv);
|
||||
min_threshold = std::min(min_threshold, uv);
|
||||
if (curr_depth < max_depth)
|
||||
{
|
||||
pos_range(0) = cp_ref_loc(i);
|
||||
pos_range(0+dim) = cp_ref_loc(i+1);
|
||||
if (dim >= 2)
|
||||
{
|
||||
pos_range(1) = cp_ref_loc(ncp + j);
|
||||
pos_range(1+dim) = cp_ref_loc(ncp + j+1);
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
pos_range(2) = cp_ref_loc(2*ncp + k);
|
||||
pos_range(2+dim) = cp_ref_loc(2*ncp + k+1);
|
||||
}
|
||||
SearchInterval *child_interval =
|
||||
new SearchInterval(pos_range, curr_depth + 1,
|
||||
child_node);
|
||||
pq.push(child_interval);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
delete current;
|
||||
}
|
||||
|
||||
// clean up remaining intervals in queue
|
||||
while (!pq.empty())
|
||||
{
|
||||
delete pq.top();
|
||||
pq.pop();
|
||||
}
|
||||
|
||||
min_lower_bound = initial_node->GetChildMinLower();
|
||||
initial_node->DeleteChildren();
|
||||
delete initial_node;
|
||||
|
||||
min_threshold = std::min(min_threshold, min_lower_bound);
|
||||
return std::make_pair(min_lower_bound, min_upper_bound);
|
||||
}
|
||||
|
||||
std::pair<real_t, real_t> GridFunction::EstimateFunctionMaximum(
|
||||
const int elem, const PLBound &plb, const int vdim,
|
||||
const int max_depth, const real_t tol) const
|
||||
{
|
||||
real_t max_threshold = std::numeric_limits<real_t>::lowest();
|
||||
return EstimateFunctionMaximum(elem, plb, vdim, max_depth, tol,
|
||||
max_threshold);
|
||||
}
|
||||
|
||||
std::pair<real_t, real_t> GridFunction::EstimateFunctionMaximum(
|
||||
const int elem, const PLBound &plb, const int vdim,
|
||||
const int max_depth, const real_t tol, real_t &max_threshold) const
|
||||
{
|
||||
const int dim = this->FESpace()->GetMesh()->Dimension();
|
||||
const int ncp = plb.GetNControlPoints();
|
||||
Vector pos_range(2*dim); pos_range = 0.0;
|
||||
for (int d = 0; d < dim; d++) { pos_range(d+dim) = 1.0; }
|
||||
Vector lower, upper, cp_ref_loc;
|
||||
|
||||
GetElementBoundsAtControlPoints(elem, plb, lower, upper, vdim);
|
||||
real_t val_min = lower.Max();
|
||||
real_t val_max = upper.Max();
|
||||
|
||||
max_threshold = std::max(max_threshold, val_min);
|
||||
|
||||
// Pruning: if the element's upper bound is less than the current global
|
||||
// lower bound, this element cannot contain the global maximum.
|
||||
if (val_max <= max_threshold)
|
||||
{
|
||||
return std::make_pair(val_min, val_max);
|
||||
}
|
||||
|
||||
if (val_min == val_max || max_depth == 0)
|
||||
{
|
||||
max_threshold = std::max(max_threshold, val_max);
|
||||
return std::make_pair(val_min, val_max);
|
||||
}
|
||||
real_t abs_tol = tol*(val_max-val_min);
|
||||
|
||||
IntervalNode *initial_node = new IntervalNode(val_min, val_max);
|
||||
SearchInterval *initial_interval = new SearchInterval(pos_range, 0,
|
||||
initial_node);
|
||||
|
||||
std::priority_queue<SearchInterval*,
|
||||
std::vector<SearchInterval*>, IntervalCompareMax> pq;
|
||||
pq.push(initial_interval);
|
||||
|
||||
real_t max_lower_bound = val_min;
|
||||
real_t max_upper_bound = val_max;
|
||||
|
||||
while (!pq.empty())
|
||||
{
|
||||
SearchInterval *current = pq.top();
|
||||
pq.pop();
|
||||
int curr_depth = current->depth;
|
||||
|
||||
// Reached max depth or this interval cannot contain the global maximum.
|
||||
if (current->node->val_max <= max_threshold || curr_depth >= max_depth)
|
||||
{
|
||||
delete current;
|
||||
continue;
|
||||
}
|
||||
|
||||
max_upper_bound = initial_node->GetChildMaxUpper();
|
||||
if (max_upper_bound - max_lower_bound < abs_tol)
|
||||
{
|
||||
delete current;
|
||||
break;
|
||||
}
|
||||
|
||||
// Subdivide the interval and get bounds on it
|
||||
GetElementBoundsAtControlPoints(elem, plb, current->ref_range,
|
||||
vdim, lower, upper, cp_ref_loc);
|
||||
|
||||
// process the bounds and create sub-intervals
|
||||
for (int k = 0; k < (dim == 3 ? ncp-1 : 1); k++)
|
||||
{
|
||||
for (int j = 0; j < (dim >= 2 ? ncp-1 : 1); j++)
|
||||
{
|
||||
for (int i = 0; i < ncp-1; i++)
|
||||
{
|
||||
real_t lv = 0.0, uv = 0.0;
|
||||
if (dim == 1)
|
||||
{
|
||||
lv = std::max(lower(i), lower(i+1));
|
||||
uv = std::max(upper(i), upper(i+1));
|
||||
}
|
||||
else if (dim == 2)
|
||||
{
|
||||
lv = std::max({lower(i + j*ncp), lower((i+1) + j*ncp),
|
||||
lower(i + (j+1)*ncp),
|
||||
lower((i+1) + (j+1)*ncp)});
|
||||
uv = std::max({upper(i + j*ncp), upper((i+1) + j*ncp),
|
||||
upper(i + (j+1)*ncp),
|
||||
upper((i+1) + (j+1)*ncp)});
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
lv = std::max({lower(i + j*ncp + k*ncp*ncp),
|
||||
lower((i+1) + j*ncp + k*ncp*ncp),
|
||||
lower(i + (j+1)*ncp + k*ncp*ncp),
|
||||
lower((i+1) + (j+1)*ncp + k*ncp*ncp),
|
||||
lower(i + j*ncp + (k+1)*ncp*ncp),
|
||||
lower((i+1) + j*ncp + (k+1)*ncp*ncp),
|
||||
lower(i + (j+1)*ncp + (k+1)*ncp*ncp),
|
||||
lower((i+1) + (j+1)*ncp + (k+1)*ncp*ncp)});
|
||||
uv = std::max({upper(i + j*ncp + k*ncp*ncp),
|
||||
upper((i+1) + j*ncp + k*ncp*ncp),
|
||||
upper(i + (j+1)*ncp + k*ncp*ncp),
|
||||
upper((i+1) + (j+1)*ncp + k*ncp*ncp),
|
||||
upper(i + j*ncp + (k+1)*ncp*ncp),
|
||||
upper((i+1) + j*ncp + (k+1)*ncp*ncp),
|
||||
upper(i + (j+1)*ncp + (k+1)*ncp*ncp),
|
||||
upper((i+1) + (j+1)*ncp + (k+1)*ncp*ncp)});
|
||||
}
|
||||
IntervalNode *child_node = new IntervalNode(lv, uv);
|
||||
current->node->AddChild(child_node);
|
||||
|
||||
if (uv > max_threshold)
|
||||
{
|
||||
max_lower_bound = std::max(max_lower_bound, lv);
|
||||
max_threshold = std::max(max_threshold, lv);
|
||||
if (curr_depth < max_depth)
|
||||
{
|
||||
pos_range(0) = cp_ref_loc(i);
|
||||
pos_range(0+dim) = cp_ref_loc(i+1);
|
||||
if (dim >= 2)
|
||||
{
|
||||
pos_range(1) = cp_ref_loc(ncp + j);
|
||||
pos_range(1+dim) = cp_ref_loc(ncp + j+1);
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
pos_range(2) = cp_ref_loc(2*ncp + k);
|
||||
pos_range(2+dim) = cp_ref_loc(2*ncp + k+1);
|
||||
}
|
||||
SearchInterval *child_interval =
|
||||
new SearchInterval(pos_range, curr_depth + 1,
|
||||
child_node);
|
||||
pq.push(child_interval);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
delete current;
|
||||
}
|
||||
// clean up remaining intervals in queue
|
||||
while (!pq.empty())
|
||||
{
|
||||
delete pq.top();
|
||||
pq.pop();
|
||||
}
|
||||
|
||||
max_upper_bound = initial_node->GetChildMaxUpper();
|
||||
initial_node->DeleteChildren();
|
||||
delete initial_node;
|
||||
max_threshold = std::max(max_threshold, max_upper_bound);
|
||||
|
||||
return std::make_pair(max_lower_bound, max_upper_bound);
|
||||
}
|
||||
|
||||
std::pair<real_t, real_t> GridFunction::EstimateFunctionMinimum(
|
||||
const int vdim, const PLBound &plb, const int max_depth,
|
||||
const real_t tol) const
|
||||
{
|
||||
real_t global_min_lower = std::numeric_limits<real_t>::max();
|
||||
real_t global_min_upper = std::numeric_limits<real_t>::max();
|
||||
|
||||
for (int i = 0; i < fes->GetNE(); i++)
|
||||
{
|
||||
std::pair<real_t, real_t> min_pair =
|
||||
EstimateFunctionMinimum(i, plb, vdim, max_depth, tol,
|
||||
global_min_lower);
|
||||
global_min_upper = std::min(global_min_upper, min_pair.second);
|
||||
}
|
||||
return std::make_pair(global_min_lower, global_min_upper);
|
||||
}
|
||||
|
||||
std::pair<real_t, real_t> GridFunction::EstimateFunctionMaximum(
|
||||
const int vdim, const PLBound &plb, const int max_depth,
|
||||
const real_t tol) const
|
||||
{
|
||||
real_t global_max_lower = std::numeric_limits<real_t>::lowest();
|
||||
real_t global_max_upper = std::numeric_limits<real_t>::lowest();
|
||||
|
||||
for (int i = 0; i < fes->GetNE(); i++)
|
||||
{
|
||||
std::pair<real_t, real_t> max_pair =
|
||||
EstimateFunctionMaximum(i, plb, vdim, max_depth, tol,
|
||||
global_max_upper);
|
||||
global_max_lower = std::max(global_max_lower, max_pair.first);
|
||||
}
|
||||
return std::make_pair(global_max_lower, global_max_upper);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+207
-25
@@ -23,6 +23,7 @@
|
||||
#include <limits>
|
||||
#include <ostream>
|
||||
#include <string>
|
||||
#include <variant>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -79,10 +80,18 @@ protected:
|
||||
bool wcoef,
|
||||
int subdomain);
|
||||
|
||||
/** Project a discontinuous vector coefficient in a continuous space and
|
||||
return in dof_attr the maximal attribute of the elements containing each
|
||||
degree of freedom. */
|
||||
void ProjectDiscCoefficient(VectorCoefficient &coeff, Array<int> &dof_attr);
|
||||
/** @brief Project a discontinuous (vector) coefficient as a grid function on
|
||||
a continuous finite element space. Return in dof_attr the maximal
|
||||
attribute of the elements containing each degree of freedom. */
|
||||
virtual void ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff, Array<int> &dof_attr);
|
||||
|
||||
/** @brief Project a discontinuous (vector) coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
virtual void ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff)
|
||||
{ Array<int> dof_attr; ProjectDiscCoefficient(coeff, dof_attr); };
|
||||
|
||||
/** Helper function for ProjectCoefficientElementL2 */
|
||||
void ProjectCoefficientElementL2_(Coefficient &coeff, Vector &sol, Vector &Va);
|
||||
@@ -150,11 +159,13 @@ public:
|
||||
|
||||
FiniteElementCollection *OwnFEC() { return fec_owned; }
|
||||
|
||||
/// Shortcut for calling FiniteElementSpace::GetVectorDim() on the underlying #fes
|
||||
int VectorDim() const;
|
||||
/** @brief Shortcut for calling FiniteElementSpace::GetVectorDim() on the
|
||||
underlying #fes */
|
||||
int VectorDim() const { return fes->GetVectorDim(); }
|
||||
|
||||
/// Shortcut for calling FiniteElementSpace::GetCurlDim() on the underlying #fes
|
||||
int CurlDim() const;
|
||||
/** @brief Shortcut for calling FiniteElementSpace::GetCurlDim() on the
|
||||
underlying #fes */
|
||||
int CurlDim() const { return fes->GetCurlDim(); }
|
||||
|
||||
/// Read only access to the (optional) internal true-dof Vector.
|
||||
const Vector &GetTrueVector() const
|
||||
@@ -513,10 +524,17 @@ public:
|
||||
but using an array of scalar coefficients for each component. */
|
||||
void ProjectCoefficient(Coefficient *coeff[]);
|
||||
|
||||
/** @brief Project a discontinuous coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
virtual void ProjectDiscCoefficient(Coefficient &coeff)
|
||||
{ ProjectDiscCoefficient(&coeff); }
|
||||
|
||||
/** @brief Project a discontinuous vector coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
virtual void ProjectDiscCoefficient(VectorCoefficient &coeff);
|
||||
virtual void ProjectDiscCoefficient(VectorCoefficient &coeff)
|
||||
{ ProjectDiscCoefficient(&coeff); }
|
||||
|
||||
enum AvgType {ARITHMETIC, HARMONIC};
|
||||
/** @brief Projects a discontinuous coefficient so that the values in shared
|
||||
@@ -532,6 +550,9 @@ public:
|
||||
std::unique_ptr<GridFunction> ProlongateToMaxOrder() const;
|
||||
|
||||
protected:
|
||||
void ProjectBdrCoefficientNormal(Coefficient *coeff, VectorCoefficient *vcoeff,
|
||||
const Array<int> &attr);
|
||||
|
||||
/** @brief Accumulates (depending on @a type) the values of @a coeff at all
|
||||
shared vdofs and counts in how many zones each vdof appears. */
|
||||
void AccumulateAndCountZones(Coefficient &coeff, AvgType type,
|
||||
@@ -564,6 +585,70 @@ protected:
|
||||
/// P-refinement version of Update().
|
||||
void UpdatePRef();
|
||||
|
||||
/** @brief Estimate the minimum value of the GridFunction in element @a elem
|
||||
* if it is below a certain @a min_threshold.
|
||||
*
|
||||
* @details For a given element \p elem and grid function component \p vdim
|
||||
* an estimate of the function minimum is the minimum of the piecewise
|
||||
* linear lower bound obtained using the given PLBound object. The actual
|
||||
* minimum is between [minimum lower bound, minimum upper bound]. We
|
||||
* improve the estimate of the function minimum by recursively
|
||||
* subdividing the interval with the lowest lower bound, and computing
|
||||
* bounds on the sub-intervals.
|
||||
* This process continues until (i) the maximum recursion depth is reached
|
||||
* or (ii) the difference between the minimum upper bound and minimum lower
|
||||
* bound is less than a certain tolerance (\p tol * [initial maximum
|
||||
* upper bound - initial minimum lower bound]).
|
||||
* The function also terminates if the lowest minima estimate is found
|
||||
* to be above the given threshold \p min_threshold. This is useful when
|
||||
* we are interested in computing the global minimum of the function
|
||||
* over all elements. In this case we can reject elements where the lowest
|
||||
* bound is above the current global minimum. In case the function
|
||||
* minimum on the element is below the global minimum, we update
|
||||
* \p min_threshold.
|
||||
*
|
||||
* We return a pair of values that bracket the actual minimum, i.e.
|
||||
* [min_lower_bound, min_upper_bound].
|
||||
*/
|
||||
std::pair<real_t,real_t> EstimateFunctionMinimum(const int elem,
|
||||
const PLBound &plb,
|
||||
const int vdim,
|
||||
const int max_depth,
|
||||
const real_t tol,
|
||||
real_t &min_threshold)const;
|
||||
|
||||
/** @brief Estimate the maximum value of the GridFunction in element @a elem
|
||||
* if it is below a certain @a max_threshold.
|
||||
*
|
||||
* @details For a given element \p elem and grid function component \p vdim
|
||||
* an estimate of the function maximum is the maximum of the piecewise
|
||||
* linear upper bound obtained using the given PLBound object. The actual
|
||||
* maximum is between [maximum lower bound, maximum upper bound]. We
|
||||
* improve the estimate of the function maximum by recursively
|
||||
* subdividing the interval with the highest upper bound, and computing
|
||||
* bounds on the sub-intervals.
|
||||
* This process continues until (i) the maximum recursion depth is reached
|
||||
* or (ii) the difference between the maximum upper bound and maximum lower
|
||||
* bound is less than a certain tolerance (\p tol * [initial maximum
|
||||
* upper bound - initial maximum lower bound]).
|
||||
* The function also terminates if the highest maxima estimate is found
|
||||
* to be below the given threshold \p max_threshold. This is useful when
|
||||
* we are interested in computing the global maximum of the function
|
||||
* over all elements. In this case we can reject elements where the upper
|
||||
* bound is below the current global maximum. In case the function
|
||||
* maximum on the element is above the global maximum, we update
|
||||
* \p max_threshold.
|
||||
*
|
||||
* We return a pair of values that bracket the actual maximum, i.e.
|
||||
* [max_lower_bound, max_upper_bound].
|
||||
*/
|
||||
std::pair<real_t,real_t> EstimateFunctionMaximum(const int elem,
|
||||
const PLBound &plb,
|
||||
const int vdim,
|
||||
const int max_depth,
|
||||
const real_t tol,
|
||||
real_t &max_threshold)const;
|
||||
|
||||
public:
|
||||
/** @brief For each vdof, counts how many elements contain the vdof,
|
||||
as containment is determined by FiniteElementSpace::GetElementVDofs(). */
|
||||
@@ -592,15 +677,26 @@ public:
|
||||
virtual void ProjectBdrCoefficient(Coefficient *coeff[],
|
||||
const Array<int> &attr);
|
||||
|
||||
/** Project the normal component of the given VectorCoefficient on
|
||||
the boundary. Only boundary attributes that are marked in
|
||||
'bdr_attr' are projected. Assumes RT-type VectorFE GridFunction. */
|
||||
/** @brief Project the normal component of the given VectorCoefficient on
|
||||
the boundary. */
|
||||
/** Only boundary attributes that are marked in @a bdr_attr are
|
||||
projected. Assumes RT-type vector finite element GridFunction. */
|
||||
void ProjectBdrCoefficientNormal(VectorCoefficient &vcoeff,
|
||||
const Array<int> &bdr_attr);
|
||||
const Array<int> &bdr_attr)
|
||||
{ ProjectBdrCoefficientNormal(NULL, &vcoeff, bdr_attr); }
|
||||
|
||||
/** @brief Project the given Coefficient in the normal direction on the
|
||||
boundary. */
|
||||
/** Only boundary attributes that are marked in @a bdr_attr are projected.
|
||||
Assumes RT-type vector finite element GridFunction. */
|
||||
void ProjectBdrCoefficientNormal(Coefficient &coeff,
|
||||
const Array<int> &bdr_attr)
|
||||
{ ProjectBdrCoefficientNormal(&coeff, NULL, bdr_attr); }
|
||||
|
||||
/** @brief Project the tangential components of the given VectorCoefficient
|
||||
on the boundary. Only boundary attributes that are marked in @a bdr_attr
|
||||
are projected. Assumes ND-type VectorFE GridFunction. */
|
||||
on the boundary. */
|
||||
/** Only boundary attributes that are marked in @a bdr_attr
|
||||
are projected. Assumes ND-type vector finite element GridFunction. */
|
||||
virtual void ProjectBdrCoefficientTangent(VectorCoefficient &vcoeff,
|
||||
const Array<int> &bdr_attr);
|
||||
|
||||
@@ -1662,21 +1758,21 @@ public:
|
||||
*/
|
||||
///@{
|
||||
/// Computes the \ref PLBound for the gridfunction with number of control
|
||||
/// points based on @a ref_factor, and returns the overall bounds for each
|
||||
/// vdim (across all elements) in @b lower and @b upper. We also return the
|
||||
/// points based on \p ref_factor, and returns the overall bounds for each
|
||||
/// vdim (across all elements) in \p lower and \p upper. We also return the
|
||||
/// PLBound object used to compute the bounds.
|
||||
/// We compute the bounds for each vdim if @a vdim < 1.
|
||||
/// We compute the bounds for each vdim if \p vdim < 1.
|
||||
/// Note: For most cases, this method/interface will be sufficient.
|
||||
virtual PLBound GetBounds(Vector &lower, Vector &upper,
|
||||
const int ref_factor=1, const int vdim=-1) const;
|
||||
|
||||
/// Computes the \ref PLBound for the gridfunction with number of control
|
||||
/// points based on @a ref_factor, and returns the bounds for each element
|
||||
/// ordered byVDim:
|
||||
/// points based on \p ref_factor, and returns the bounds for each element
|
||||
/// ordered byNodes:
|
||||
/// lower_{0,0}, lower_{1,0}, ..., lower_{ne-1,0},
|
||||
/// lower_{0,1}, ..., lower_{ne-1,vdim-1}. We also return the
|
||||
/// PLBound object used to compute the bounds.
|
||||
/// We compute the bounds for each vdim if @a vdim < 1.
|
||||
/// We compute the bounds for each vdim if \p vdim < 1.
|
||||
PLBound GetElementBounds(Vector &lower, Vector &upper,
|
||||
const int ref_factor=1, const int vdim=-1) const;
|
||||
|
||||
@@ -1687,6 +1783,18 @@ public:
|
||||
Vector &lower, Vector &upper,
|
||||
const int vdim = -1) const;
|
||||
|
||||
/** @brief Gets the bounds on given reference range inside an element.
|
||||
*
|
||||
* @details @a ref_range is a vector of size 2*dim that specifies the
|
||||
* lower and upper limits in each dimension of the reference element.
|
||||
* For example, in 2D, ref_range = [rmin, smin, rmax, smax].
|
||||
*/
|
||||
void GetElementBoundsAtControlPoints(const int elem, const PLBound &plb,
|
||||
const Vector &ref_range,
|
||||
const int vdim,
|
||||
Vector &lower, Vector &upper,
|
||||
Vector &control_pos) const;
|
||||
|
||||
/// Compute bounds on the grid function for the given element.
|
||||
/// The bounds are stored in @b lower and @b upper.
|
||||
void GetElementBounds(const int elem, const PLBound &plb,
|
||||
@@ -1694,11 +1802,45 @@ public:
|
||||
const int vdim = -1) const;
|
||||
|
||||
/// Compute bounds on the grid function for all the elements. The bounds
|
||||
/// are returned in @b lower and @b upper, ordered byVDim:
|
||||
/// are returned in @b lower and @b upper, ordered byNodes:
|
||||
/// lower_{0,0}, lower_{1,0}, ..., lower_{ne-1,0},
|
||||
/// lower_{0,1}, ..., lower_{ne-1,vdim-1}
|
||||
void GetElementBounds(const PLBound &plb, Vector &lower, Vector &upper,
|
||||
const int vdim=-1) const;
|
||||
|
||||
/** @brief Estimate the minimum value of the GridFunction in element @a elem.
|
||||
*
|
||||
* @details See the protected version of EstimateFunctionMinimum for
|
||||
* details.
|
||||
*/
|
||||
std::pair<real_t, real_t> EstimateFunctionMinimum(const int elem,
|
||||
const PLBound &plb,
|
||||
const int vdim,
|
||||
const int max_depth,
|
||||
const real_t tol) const;
|
||||
|
||||
/** @brief Estimate the minimum value of the GridFunction in element @a elem.
|
||||
*
|
||||
* @details See the protected version of EstimateFunctionMaximum for
|
||||
* details.
|
||||
*/
|
||||
std::pair<real_t, real_t> EstimateFunctionMaximum(const int elem,
|
||||
const PLBound &plb,
|
||||
const int vdim,
|
||||
const int max_depth,
|
||||
const real_t tol) const;
|
||||
|
||||
/** @brief Estimate the GridFunction minimum across all elements. */
|
||||
virtual std::pair<real_t,real_t> EstimateFunctionMinimum(const int vdim,
|
||||
const PLBound &plb,
|
||||
const int max_depth,
|
||||
const real_t tol) const;
|
||||
|
||||
/** @brief Estimate the GridFunction maximum across all elements. */
|
||||
virtual std::pair<real_t,real_t> EstimateFunctionMaximum(const int vdim,
|
||||
const PLBound &plb,
|
||||
const int max_depth,
|
||||
const real_t tol) const;
|
||||
///@}
|
||||
|
||||
/// Destroys grid function.
|
||||
@@ -1804,7 +1946,7 @@ real_t ComputeElementLpDistance(real_t p, int i,
|
||||
GridFunction& gf1, GridFunction& gf2);
|
||||
|
||||
|
||||
/// Class used for extruding scalar GridFunctions
|
||||
/// Class used for extruding a scalar coefficient
|
||||
class ExtrudeCoefficient : public Coefficient
|
||||
{
|
||||
private:
|
||||
@@ -1812,13 +1954,53 @@ private:
|
||||
Mesh *mesh_in;
|
||||
Coefficient &sol_in;
|
||||
public:
|
||||
/// Constructs an instance of VectorExtrudeCoefficient
|
||||
/**
|
||||
* @param m 1D mesh
|
||||
* @param s 1D vector coefficient
|
||||
* @param n_ number of transverse elements of the extruded mesh
|
||||
*/
|
||||
ExtrudeCoefficient(Mesh *m, Coefficient &s, int n_)
|
||||
: n(n_), mesh_in(m), sol_in(s) { }
|
||||
: n(n_), mesh_in(m), sol_in(s)
|
||||
{ MFEM_VERIFY(n > 0, "Number of transverse elements must be positive!"); }
|
||||
|
||||
real_t Eval(ElementTransformation &T, const IntegrationPoint &ip) override;
|
||||
|
||||
virtual ~ExtrudeCoefficient() { }
|
||||
};
|
||||
|
||||
/// Extrude a scalar 1D GridFunction, after extruding the mesh with Extrude1D.
|
||||
/// Class used for extruding a vector coefficient
|
||||
class VectorExtrudeCoefficient : public VectorCoefficient
|
||||
{
|
||||
private:
|
||||
int n;
|
||||
Mesh *mesh_in;
|
||||
VectorCoefficient &sol_in;
|
||||
public:
|
||||
/// Constructs an instance of VectorExtrudeCoefficient
|
||||
/**
|
||||
* @param m 1D mesh
|
||||
* @param s 1D vector coefficient
|
||||
* @param n_ number of transverse elements of the extruded mesh
|
||||
*/
|
||||
VectorExtrudeCoefficient(Mesh *m, VectorCoefficient &s, int n_)
|
||||
: VectorCoefficient(s.GetVDim()), n(n_), mesh_in(m), sol_in(s)
|
||||
{ MFEM_VERIFY(n > 0, "Number of transverse elements must be positive!"); }
|
||||
|
||||
void Eval(Vector &v, ElementTransformation &T,
|
||||
const IntegrationPoint &ip) override;
|
||||
using VectorCoefficient::Eval;
|
||||
|
||||
virtual ~VectorExtrudeCoefficient() { }
|
||||
};
|
||||
|
||||
/// Extrude a 1D GridFunction, after extruding the mesh with Extrude1D()
|
||||
/**
|
||||
* @param mesh 1D mesh
|
||||
* @param mesh2d extruded mesh
|
||||
* @param sol grid function
|
||||
* @param ny number of transverse elements of the extruded mesh
|
||||
*/
|
||||
GridFunction *Extrude1DGridFunction(Mesh *mesh, Mesh *mesh2d,
|
||||
GridFunction *sol, const int ny);
|
||||
|
||||
|
||||
+8
-11
@@ -106,9 +106,7 @@ FindPointsGSLIB::FindPointsGSLIB()
|
||||
gsl_comm = new gslib::comm;
|
||||
cr = new gslib::crystal;
|
||||
#ifdef MFEM_USE_MPI
|
||||
int initialized = 0;
|
||||
MPI_Initialized(&initialized);
|
||||
if (!initialized) { MPI_Init(NULL, NULL); }
|
||||
if (!Mpi::IsInitialized()) { Mpi::Init(); }
|
||||
MPI_Comm comm = MPI_COMM_WORLD;
|
||||
comm_init(gsl_comm, comm);
|
||||
#else
|
||||
@@ -490,7 +488,7 @@ void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
|
||||
}
|
||||
DEV.find_device = true;
|
||||
|
||||
const int id = gsl_comm->id, np = gsl_comm->np;
|
||||
const unsigned int id = gsl_comm->id, np = gsl_comm->np;
|
||||
|
||||
gsl_mfem_ref.SetSize(points_cnt * dim);
|
||||
gsl_mfem_elem.SetSize(points_cnt);
|
||||
@@ -652,7 +650,7 @@ void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
|
||||
{
|
||||
const int pp = hash_offset[i];
|
||||
/* don't send back to where it just came from */
|
||||
if (pp == p->proc)
|
||||
if (static_cast<unsigned>(pp) == p->proc)
|
||||
{
|
||||
continue;
|
||||
}
|
||||
@@ -1068,7 +1066,7 @@ void FindPointsGSLIB::InterpolateOnDevice(const Vector &field_in_evec,
|
||||
sarray_transfer(struct evalOutPt_t, &outpt, proc, 1, cr);
|
||||
|
||||
opt = (evalOutPt_t *)outpt.ptr;
|
||||
for (int index = 0; index < outpt.n; index++)
|
||||
for (size_t index = 0; index < outpt.n; index++)
|
||||
{
|
||||
int idx = ordering == Ordering::byNODES ?
|
||||
opt->index + i*points_cnt :
|
||||
@@ -1413,7 +1411,7 @@ void FindPointsGSLIB::SetupSplitMeshesAndIntegrationRules(const int order)
|
||||
{
|
||||
MFEM_VERIFY(mesh, "Setup FindPointsGSLIB with mesh first.");
|
||||
const int dof1D = order+1;
|
||||
const int dim = mesh->Dimension();
|
||||
dim = mesh->Dimension();
|
||||
|
||||
SetupSplitMeshes();
|
||||
if (dim == 2)
|
||||
@@ -2254,7 +2252,8 @@ void FindPointsGSLIB::DistributeInterpolatedValues(const Vector &int_vals,
|
||||
sarray_transfer(struct out_pt, outpt, proc, 1, cr);
|
||||
|
||||
// Store received data
|
||||
MFEM_VERIFY(outpt->n == points_cnt, "Incompatible size. Number of points "
|
||||
MFEM_VERIFY(outpt->n == static_cast<size_t>(points_cnt),
|
||||
"Incompatible size. Number of points "
|
||||
"received does not match the number of points originally "
|
||||
"found using FindPoints.");
|
||||
|
||||
@@ -2623,9 +2622,7 @@ GSOPGSLIB::GSOPGSLIB(Array<long long> &ids)
|
||||
gsl_comm = new gslib::comm;
|
||||
cr = new gslib::crystal;
|
||||
#ifdef MFEM_USE_MPI
|
||||
int initialized;
|
||||
MPI_Initialized(&initialized);
|
||||
if (!initialized) { MPI_Init(NULL, NULL); }
|
||||
if (!Mpi::IsInitialized()) { Mpi::Init(); }
|
||||
MPI_Comm comm = MPI_COMM_WORLD;
|
||||
comm_init(gsl_comm, comm);
|
||||
#else
|
||||
|
||||
@@ -202,13 +202,19 @@ protected:
|
||||
const int dof1dsol, const int ordering);
|
||||
|
||||
public:
|
||||
/// Serial constructor
|
||||
FindPointsGSLIB();
|
||||
|
||||
/// Serial constructor + setup with given Mesh (see \ref Setup)
|
||||
FindPointsGSLIB(Mesh &mesh_in, const double bb_t = 0.1,
|
||||
const double newt_tol = 1.0e-12,
|
||||
const int npt_max = 256);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
/// Constructor for ParMesh
|
||||
FindPointsGSLIB(MPI_Comm comm_);
|
||||
|
||||
/// Constructor + setup with given ParMesh (see \ref Setup)
|
||||
FindPointsGSLIB(ParMesh &mesh_in, const double bb_t = 0.1,
|
||||
const double newt_tol = 1.0e-12,
|
||||
const int npt_max = 256);
|
||||
|
||||
@@ -254,7 +254,7 @@ get_edge(const double *elx[2], const double *wtend, int ei,
|
||||
edge.dxdn[d] = workspace + (2 + d) * pN; //dxdn and dydn at DOFs along edge
|
||||
}
|
||||
|
||||
if (side_init != (1u << ei))
|
||||
if (static_cast<unsigned>(side_init) != (1u << ei))
|
||||
{
|
||||
#define ELX(d, j, k) elx[d][j + k * pN] // assumes lexicographic ordering
|
||||
for (int d = 0; d < 2; ++d)
|
||||
|
||||
@@ -294,7 +294,7 @@ get_face(const double *elx[3], const double *wtend, int fi, double *workspace,
|
||||
face.dxdn[d] = workspace+(3+d)*p_Nfr;
|
||||
}
|
||||
|
||||
if (side_init != (1u << fi))
|
||||
if (static_cast<unsigned>(side_init) != (1u << fi))
|
||||
{
|
||||
const int e_stride[3] = {1, pN, pN*pN};
|
||||
#define ELX(d, j, k, l) elx[d][j*e_stride[d1]+k*e_stride[d2]+l*e_stride[dn]]
|
||||
@@ -342,7 +342,7 @@ get_edge(const double *elx[3], const double *wtend, int ei, double *workspace,
|
||||
|
||||
if (jidx >= 3*pN) { return edge; }
|
||||
|
||||
if (side_init != (64u << ei))
|
||||
if (static_cast<unsigned>(side_init) != (64u << ei))
|
||||
{
|
||||
const int e_stride[3] = {1, pN, pN*pN};
|
||||
#define ELX(d, j, k, l) elx[d][j*e_stride[de]+k*e_stride[dn1]+l*e_stride[dn2]]
|
||||
|
||||
@@ -197,15 +197,21 @@ static void EAHdivAssemble3D(const int NE,
|
||||
// Assemble (one row per thread)
|
||||
MFEM_FOREACH_THREAD(idx_i, x, NDOF)
|
||||
{
|
||||
// NOTE: due to an llvm backend bug, usage of the modulus operator
|
||||
// has been removed from this foreach section.
|
||||
const int ic = idx_i / NDOF_C;
|
||||
const int idx_ii = idx_i % NDOF_C;
|
||||
const int idx_ii = idx_i - ic * NDOF_C; // idx_i % NDOF_C
|
||||
|
||||
const int nx_i = (ic == 0) ? D1D : D1D-1;
|
||||
const int ny_i = (ic == 1) ? D1D : D1D-1;
|
||||
|
||||
const int ix = idx_ii % nx_i;
|
||||
const int iy = (idx_ii / nx_i) % ny_i;
|
||||
const int iz = (idx_ii / nx_i) / ny_i;
|
||||
const int qx_i = idx_ii / nx_i;
|
||||
const int ix = idx_ii - qx_i * nx_i; // idx_ii % nx_i
|
||||
|
||||
const int qy_i = qx_i / ny_i;
|
||||
const int iy = qx_i - qy_i * ny_i; // (idx_ii / nx_i) % ny_i
|
||||
|
||||
const int iz = qy_i; // (idx_ii / nx_i) / ny_i
|
||||
|
||||
const real_t (&Bi1)[MQ1][MD1] = (ic == 0) ? r_Bc : r_Bo;
|
||||
const real_t (&Bi2)[MQ1][MD1] = (ic == 1) ? r_Bc : r_Bo;
|
||||
@@ -214,14 +220,18 @@ static void EAHdivAssemble3D(const int NE,
|
||||
for (int idx_j = 0; idx_j < NDOF; ++idx_j)
|
||||
{
|
||||
const int jc = idx_j / NDOF_C;
|
||||
const int idx_jj = idx_j % NDOF_C;
|
||||
const int idx_jj = idx_j - jc * NDOF_C; // idx_j % NDOF_C
|
||||
|
||||
const int nx_j = (jc == 0) ? D1D : D1D-1;
|
||||
const int ny_j = (jc == 1) ? D1D : D1D-1;
|
||||
|
||||
const int jx = idx_jj % nx_j;
|
||||
const int jy = (idx_jj / nx_j) % ny_j;
|
||||
const int jz = (idx_jj / nx_j) / ny_j;
|
||||
const int qx_j = idx_jj / nx_j;
|
||||
const int jx = idx_jj - qx_j * nx_j; // idx_jj % nx_j
|
||||
|
||||
const int qy_j = qx_j / ny_j;
|
||||
const int jy = qx_j - qy_j * ny_j; // (idx_jj / nx_j) % ny_j
|
||||
|
||||
const int jz = qy_j; // (idx_jj / nx_j) / ny_j
|
||||
|
||||
const real_t (&Bj1)[MQ1][MD1] = (jc == 0) ? r_Bc : r_Bo;
|
||||
const real_t (&Bj2)[MQ1][MD1] = (jc == 1) ? r_Bc : r_Bo;
|
||||
|
||||
@@ -181,6 +181,12 @@ constexpr int NBZ(int D1D)
|
||||
{
|
||||
return ipow(2, D(D1D) >= 0 ? D(D1D) : 0);
|
||||
}
|
||||
constexpr int NBZ3D(int MDQ)
|
||||
{
|
||||
return MDQ > 0 ? std::min<int>(
|
||||
(128 + MDQ * MDQ * MDQ - 1) / (MDQ * MDQ * MDQ), 64)
|
||||
: 1;
|
||||
}
|
||||
}
|
||||
|
||||
// Shared memory PA Mass Diagonal 2D kernel
|
||||
@@ -804,19 +810,23 @@ void PAMassApply3D_Element(const int e,
|
||||
}
|
||||
}
|
||||
|
||||
template<int T_D1D, int T_Q1D, bool ACCUMULATE = true>
|
||||
MFEM_HOST_DEVICE inline
|
||||
void SmemPAMassApply3D_Element(const int e,
|
||||
const int NE,
|
||||
const real_t *b_,
|
||||
const real_t *d_,
|
||||
const real_t *x_,
|
||||
real_t *y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
template <int T_D1D, int T_Q1D, int TBATCH, bool ACCUMULATE = true>
|
||||
MFEM_HOST_DEVICE inline void
|
||||
SmemPAMassApply3D_Element(const int e, const int NE, const real_t *b_,
|
||||
const real_t *d_, const real_t *x_, real_t *y_,
|
||||
int d1d = 0, int q1d = 0)
|
||||
{
|
||||
constexpr int D1D = T_D1D ? T_D1D : d1d;
|
||||
constexpr int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
static_assert(TBATCH > 0, "TBATCH must be positive");
|
||||
#if defined(__CUDA_ARCH__) || defined(__HIP_DEVICE_COMPILE__)
|
||||
constexpr int tbatch = TBATCH;
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
#else
|
||||
// host always batch size 1
|
||||
constexpr int tbatch = 1;
|
||||
constexpr int tidz = 0;
|
||||
#endif
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
@@ -829,33 +839,37 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
MFEM_SHARED real_t sDQ[MQ1*MD1];
|
||||
real_t (*B)[MD1] = (real_t (*)[MD1]) sDQ;
|
||||
real_t (*Bt)[MQ1] = (real_t (*)[MQ1]) sDQ;
|
||||
MFEM_SHARED real_t sm0[MDQ*MDQ*MDQ];
|
||||
MFEM_SHARED real_t sm1[MDQ*MDQ*MDQ];
|
||||
real_t (*X)[MD1][MD1] = (real_t (*)[MD1][MD1]) sm0;
|
||||
real_t (*DDQ)[MD1][MQ1] = (real_t (*)[MD1][MQ1]) sm1;
|
||||
real_t (*DQQ)[MQ1][MQ1] = (real_t (*)[MQ1][MQ1]) sm0;
|
||||
real_t (*QQQ)[MQ1][MQ1] = (real_t (*)[MQ1][MQ1]) sm1;
|
||||
real_t (*QQD)[MQ1][MD1] = (real_t (*)[MQ1][MD1]) sm0;
|
||||
real_t (*QDD)[MD1][MD1] = (real_t (*)[MD1][MD1]) sm1;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_SHARED real_t sm0[tbatch][MDQ*MDQ*MDQ];
|
||||
MFEM_SHARED real_t sm1[tbatch][MDQ*MDQ*MDQ];
|
||||
real_t (*X)[MD1][MD1] = (real_t (*)[MD1][MD1]) (sm0+tidz);
|
||||
real_t (*DDQ)[MD1][MQ1] = (real_t (*)[MD1][MQ1]) (sm1+tidz);
|
||||
real_t (*DQQ)[MQ1][MQ1] = (real_t (*)[MQ1][MQ1]) (sm0+tidz);
|
||||
real_t (*QQQ)[MQ1][MQ1] = (real_t (*)[MQ1][MQ1]) (sm1+tidz);
|
||||
real_t (*QQD)[MQ1][MD1] = (real_t (*)[MQ1][MD1]) (sm0+tidz);
|
||||
real_t (*QDD)[MD1][MD1] = (real_t (*)[MD1][MD1]) (sm1+tidz);
|
||||
MFEM_FOREACH_THREAD(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD(dx, x, D1D)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
X[dz][dy][dx] = x(dx,dy,dz,e);
|
||||
X[dz][dy][dx] = x(dx, dy, dz, e);
|
||||
}
|
||||
}
|
||||
MFEM_FOREACH_THREAD(dx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(dx, x, Q1D) { B[dx][dy] = b(dx, dy); }
|
||||
}
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy, y, D1D)
|
||||
{
|
||||
B[dx][dy] = b(dx,dy);
|
||||
MFEM_FOREACH_THREAD(dx, x, Q1D) { B[dx][dy] = b(dx, dy); }
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(qx, x, Q1D)
|
||||
{
|
||||
real_t u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
@@ -880,9 +894,9 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
MFEM_FOREACH_THREAD(qy, y, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(qx, x, Q1D)
|
||||
{
|
||||
real_t u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
@@ -907,9 +921,9 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
MFEM_FOREACH_THREAD(qy, y, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(qx, x, Q1D)
|
||||
{
|
||||
real_t u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
@@ -929,22 +943,22 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; qz++)
|
||||
{
|
||||
QQQ[qz][qy][qx] = u[qz] * d(qx,qy,qz,e);
|
||||
QQQ[qz][qy][qx] = u[qz] * d(qx, qy, qz, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(di,y,D1D)
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(di, y, D1D)
|
||||
{
|
||||
Bt[di][q] = b(q,di);
|
||||
MFEM_FOREACH_THREAD(q, x, Q1D) { Bt[di][q] = b(q, di); }
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
MFEM_FOREACH_THREAD(qy, y, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD(dx, x, D1D)
|
||||
{
|
||||
real_t u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
@@ -969,9 +983,9 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD(dx, x, D1D)
|
||||
{
|
||||
real_t u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
@@ -996,9 +1010,9 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD(dx, x, D1D)
|
||||
{
|
||||
real_t u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
@@ -1020,11 +1034,11 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
{
|
||||
if (ACCUMULATE)
|
||||
{
|
||||
y(dx,dy,dz,e) += u[dz];
|
||||
y(dx, dy, dz, e) += u[dz];
|
||||
}
|
||||
else
|
||||
{
|
||||
y(dx,dy,dz,e) = u[dz];
|
||||
y(dx, dy, dz, e) = u[dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1115,8 +1129,8 @@ inline void PAMassApply3D(const int NE,
|
||||
});
|
||||
}
|
||||
|
||||
// Shared memory PA Mass Apply 2D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
// Shared memory PA Mass Apply 3D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int TBATCH=1>
|
||||
inline void SmemPAMassApply3D(const int NE,
|
||||
const Array<real_t> &b_,
|
||||
const Array<real_t> &bt_,
|
||||
@@ -1126,6 +1140,9 @@ inline void SmemPAMassApply3D(const int NE,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
static_assert(T_D1D > 0, "T_D1D must be positive");
|
||||
static_assert(T_Q1D > 0, "T_Q1D must be positive");
|
||||
static_assert(TBATCH > 0, "TBATCH must be positive");
|
||||
MFEM_CONTRACT_VAR(bt_);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
@@ -1137,9 +1154,11 @@ inline void SmemPAMassApply3D(const int NE,
|
||||
const auto d = d_.Read();
|
||||
const auto x = x_.Read();
|
||||
auto y = y_.ReadWrite();
|
||||
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
mfem::forall_2D_batch<T_Q1D * T_Q1D * TBATCH>(NE, Q1D, Q1D, TBATCH,
|
||||
[=] MFEM_HOST_DEVICE(int e)
|
||||
{
|
||||
internal::SmemPAMassApply3D_Element<T_D1D,T_Q1D>(e, NE, b, d, x, y, d1d, q1d);
|
||||
internal::SmemPAMassApply3D_Element<T_D1D, T_Q1D, TBATCH>(e, NE, b, d, x,
|
||||
y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
@@ -1394,7 +1413,16 @@ ApplyKernelType MassIntegrator::ApplyPAKernels::Kernel()
|
||||
{
|
||||
if constexpr (DIM == 1) { return internal::PAMassApply1D; }
|
||||
else if constexpr (DIM == 2) { return internal::SmemPAMassApply2D<T_D1D,T_Q1D>; }
|
||||
else if constexpr (DIM == 3) { return internal::SmemPAMassApply3D<T_D1D, T_Q1D>; }
|
||||
else if constexpr (DIM == 3)
|
||||
{
|
||||
constexpr int MDQ = T_D1D >= T_Q1D ? T_D1D : T_Q1D;
|
||||
// max 64 threads in z limit in cuda and hip
|
||||
if constexpr (MDQ > 0)
|
||||
{
|
||||
return internal::SmemPAMassApply3D<T_D1D, T_Q1D,
|
||||
internal::mass::NBZ3D(MDQ)>;
|
||||
}
|
||||
}
|
||||
MFEM_ABORT("");
|
||||
}
|
||||
|
||||
|
||||
@@ -171,15 +171,15 @@ template<int DIM, int T_SDIM, int T_D1D, int T_Q1D>
|
||||
VectorDiffusionIntegrator::ApplyKernelType
|
||||
VectorDiffusionIntegrator::ApplyPAKernels::Kernel()
|
||||
{
|
||||
if (DIM == 2)
|
||||
if constexpr (DIM == 2)
|
||||
{
|
||||
return internal::SmemPAVectorDiffusionApply2D<T_SDIM, T_D1D, T_Q1D>;
|
||||
}
|
||||
else if (DIM == 3)
|
||||
else if constexpr (DIM == 3)
|
||||
{
|
||||
return internal::SmemPAVectorDiffusionApply3D<T_SDIM, T_D1D, T_Q1D>;
|
||||
}
|
||||
else { MFEM_ABORT("Unsupported kernel"); }
|
||||
MFEM_ABORT("Unsupported kernel");
|
||||
}
|
||||
|
||||
inline VectorDiffusionIntegrator::ApplyKernelType
|
||||
|
||||
@@ -182,15 +182,15 @@ template<int DIM, int T_D1D, int T_Q1D>
|
||||
VectorMassIntegrator::VectorMassAddMultPAType
|
||||
VectorMassIntegrator::VectorMassAddMultPA::Kernel()
|
||||
{
|
||||
if (DIM == 2)
|
||||
if constexpr (DIM == 2)
|
||||
{
|
||||
return internal::SmemPAVectorMassApply2D<T_D1D,T_Q1D>;
|
||||
}
|
||||
else if (DIM == 3)
|
||||
else if constexpr (DIM == 3)
|
||||
{
|
||||
return internal::SmemPAVectorMassApply3D<T_D1D, T_Q1D>;
|
||||
}
|
||||
else { MFEM_ABORT("Unsupported kernel"); }
|
||||
MFEM_ABORT("Unsupported kernel");
|
||||
}
|
||||
|
||||
inline VectorMassIntegrator::VectorMassAddMultPAType
|
||||
|
||||
@@ -301,18 +301,14 @@ template <int DIM, int T_D1D, int T_Q1D>
|
||||
DomainLFIntegrator::AssembleKernelType
|
||||
DomainLFIntegrator::AssembleKernels::Kernel()
|
||||
{
|
||||
switch (DIM)
|
||||
{
|
||||
case 1:
|
||||
return DLFEvalAssemble1D<T_D1D, T_Q1D>;
|
||||
case 2:
|
||||
return DLFEvalAssemble2D<T_D1D, T_Q1D>;
|
||||
case 3:
|
||||
return DLFEvalAssemble3D<T_D1D, T_Q1D>;
|
||||
}
|
||||
if constexpr (DIM == 1) { return DLFEvalAssemble1D<T_D1D, T_Q1D>; }
|
||||
if constexpr (DIM == 2) { return DLFEvalAssemble2D<T_D1D, T_Q1D>; }
|
||||
if constexpr (DIM == 3) { return DLFEvalAssemble3D<T_D1D, T_Q1D>; }
|
||||
MFEM_ABORT("");
|
||||
}
|
||||
|
||||
/// \endcond DO_NOT_DOCUMENT
|
||||
|
||||
} // namespace mfem
|
||||
#endif
|
||||
|
||||
#endif // MFEM_LININTEG_DOMAIN_KERNELS_HPP
|
||||
|
||||
+811
-327
File diff suppressed because it is too large
Load Diff
+63
-64
@@ -43,56 +43,52 @@ public:
|
||||
index = i;
|
||||
}
|
||||
|
||||
void Set3w(const real_t x1, const real_t x2, const real_t x3, const real_t w)
|
||||
{ x = x1; y = x2; z = x3; weight = w; }
|
||||
void Set2w(const real_t x1, const real_t x2, const real_t w)
|
||||
{ x = x1; y = x2; weight = w; }
|
||||
void Set1w(const real_t x1, const real_t w)
|
||||
{ x = x1; weight = w; }
|
||||
|
||||
void Set3w(const real_t *p) { Set3w(p[0], p[1], p[2], p[3]); }
|
||||
void Set2w(const real_t *p) { Set2w(p[0], p[1], p[2]); }
|
||||
void Set1w(const real_t *p) { Set1w(p[0], p[1]); }
|
||||
|
||||
void Set3(const real_t x1, const real_t x2, const real_t x3)
|
||||
{ x = x1; y = x2; z = x3; }
|
||||
void Set2(const real_t x1, const real_t x2)
|
||||
{ x = x1; y = x2; }
|
||||
void Set1(const real_t x1)
|
||||
{ x = x1; }
|
||||
|
||||
void Set3(const real_t *p) { Set3(p[0], p[1], p[2]); }
|
||||
void Set2(const real_t *p) { Set2(p[0], p[1]); }
|
||||
void Set1(const real_t *p) { Set1(p[0]); }
|
||||
|
||||
void Set(const real_t x1, const real_t x2, const real_t x3, const real_t w)
|
||||
{ Set3w(x1, x2, x3, w); }
|
||||
|
||||
void Set(const real_t *p, const int dim)
|
||||
{
|
||||
MFEM_ASSERT(1 <= dim && dim <= 3, "invalid dim: " << dim);
|
||||
x = p[0];
|
||||
if (dim > 1)
|
||||
switch (dim)
|
||||
{
|
||||
y = p[1];
|
||||
if (dim > 2)
|
||||
{
|
||||
z = p[2];
|
||||
}
|
||||
case 3: Set3(p); break;
|
||||
case 2: Set2(p); break;
|
||||
case 1: Set1(p); break;
|
||||
}
|
||||
}
|
||||
|
||||
void Get(real_t *p, const int dim) const
|
||||
{
|
||||
MFEM_ASSERT(1 <= dim && dim <= 3, "invalid dim: " << dim);
|
||||
p[0] = x;
|
||||
if (dim > 1)
|
||||
switch (dim)
|
||||
{
|
||||
p[1] = y;
|
||||
if (dim > 2)
|
||||
{
|
||||
p[2] = z;
|
||||
}
|
||||
case 3: p[2] = z;
|
||||
case 2: p[1] = y;
|
||||
case 1: p[0] = x;
|
||||
}
|
||||
}
|
||||
|
||||
void Set(const real_t x1, const real_t x2, const real_t x3, const real_t w)
|
||||
{ x = x1; y = x2; z = x3; weight = w; }
|
||||
|
||||
void Set3w(const real_t *p) { x = p[0]; y = p[1]; z = p[2]; weight = p[3]; }
|
||||
|
||||
void Set3(const real_t x1, const real_t x2, const real_t x3)
|
||||
{ x = x1; y = x2; z = x3; }
|
||||
|
||||
void Set3(const real_t *p) { x = p[0]; y = p[1]; z = p[2]; }
|
||||
|
||||
void Set2w(const real_t x1, const real_t x2, const real_t w)
|
||||
{ x = x1; y = x2; weight = w; }
|
||||
|
||||
void Set2w(const real_t *p) { x = p[0]; y = p[1]; weight = p[2]; }
|
||||
|
||||
void Set2(const real_t x1, const real_t x2) { x = x1; y = x2; }
|
||||
|
||||
void Set2(const real_t *p) { x = p[0]; y = p[1]; }
|
||||
|
||||
void Set1w(const real_t x1, const real_t w) { x = x1; weight = w; }
|
||||
|
||||
void Set1w(const real_t *p) { x = p[0]; weight = p[1]; }
|
||||
};
|
||||
|
||||
/// Class for an integration rule - an Array of IntegrationPoint.
|
||||
@@ -125,18 +121,6 @@ private:
|
||||
void AddTriPoints3b(const int off, const real_t b, const real_t weight)
|
||||
{ AddTriPoints3(off, (1. - b)/2., b, weight); }
|
||||
|
||||
void AddTriPoints3R(const int off, const real_t a, const real_t b,
|
||||
const real_t c, const real_t weight)
|
||||
{
|
||||
IntPoint(off + 0).Set2w(a, b, weight);
|
||||
IntPoint(off + 1).Set2w(c, a, weight);
|
||||
IntPoint(off + 2).Set2w(b, c, weight);
|
||||
}
|
||||
|
||||
void AddTriPoints3R(const int off, const real_t a, const real_t b,
|
||||
const real_t weight)
|
||||
{ AddTriPoints3R(off, a, b, 1. - a - b, weight); }
|
||||
|
||||
void AddTriPoints6(const int off, const real_t a, const real_t b,
|
||||
const real_t c, const real_t weight)
|
||||
{
|
||||
@@ -183,14 +167,6 @@ private:
|
||||
AddTetPoints3(off + 1, a, 1. - 3.*a, weight);
|
||||
}
|
||||
|
||||
// given b, add the permutations of (a,a,a,b), where 3*a + b = 1
|
||||
void AddTetPoints4b(const int off, const real_t b, const real_t weight)
|
||||
{
|
||||
const real_t a = (1. - b)/3.;
|
||||
IntPoint(off).Set(a, a, a, weight);
|
||||
AddTetPoints3(off + 1, a, b, weight);
|
||||
}
|
||||
|
||||
// add the permutations of (a,a,b,b), 2*(a + b) = 1
|
||||
void AddTetPoints6(const int off, const real_t a, const real_t weight)
|
||||
{
|
||||
@@ -209,14 +185,37 @@ private:
|
||||
AddTetPoints6(off + 6, a, bc, cb, weight);
|
||||
}
|
||||
|
||||
// given (b,c), add the permutations of (a,a,b,c), 2*a + b + c = 1
|
||||
void AddTetPoints12bc(const int off, const real_t b, const real_t c,
|
||||
const real_t weight)
|
||||
// add all 24 permutations of (a,b,c,d) where a+b+c+d = 1, all distinct
|
||||
void AddTetPoints24(const int off, const real_t a, const real_t b,
|
||||
const real_t c, const real_t weight)
|
||||
{
|
||||
const real_t a = (1. - b - c)/2.;
|
||||
AddTetPoints3(off, a, b, weight);
|
||||
AddTetPoints3(off + 3, a, c, weight);
|
||||
AddTetPoints6(off + 6, a, b, c, weight);
|
||||
const real_t d = 1. - a - b - c;
|
||||
// all 24 permutations of 4 distinct barycentric coordinates
|
||||
// permuting which coordinate goes to x, y, z (4th is 1-x-y-z)
|
||||
IntPoint(off + 0).Set(a, b, c, weight);
|
||||
IntPoint(off + 1).Set(a, b, d, weight);
|
||||
IntPoint(off + 2).Set(a, c, b, weight);
|
||||
IntPoint(off + 3).Set(a, c, d, weight);
|
||||
IntPoint(off + 4).Set(a, d, b, weight);
|
||||
IntPoint(off + 5).Set(a, d, c, weight);
|
||||
IntPoint(off + 6).Set(b, a, c, weight);
|
||||
IntPoint(off + 7).Set(b, a, d, weight);
|
||||
IntPoint(off + 8).Set(b, c, a, weight);
|
||||
IntPoint(off + 9).Set(b, c, d, weight);
|
||||
IntPoint(off + 10).Set(b, d, a, weight);
|
||||
IntPoint(off + 11).Set(b, d, c, weight);
|
||||
IntPoint(off + 12).Set(c, a, b, weight);
|
||||
IntPoint(off + 13).Set(c, a, d, weight);
|
||||
IntPoint(off + 14).Set(c, b, a, weight);
|
||||
IntPoint(off + 15).Set(c, b, d, weight);
|
||||
IntPoint(off + 16).Set(c, d, a, weight);
|
||||
IntPoint(off + 17).Set(c, d, b, weight);
|
||||
IntPoint(off + 18).Set(d, a, b, weight);
|
||||
IntPoint(off + 19).Set(d, a, c, weight);
|
||||
IntPoint(off + 20).Set(d, b, a, weight);
|
||||
IntPoint(off + 21).Set(d, b, c, weight);
|
||||
IntPoint(off + 22).Set(d, c, a, weight);
|
||||
IntPoint(off + 23).Set(d, c, b, weight);
|
||||
}
|
||||
|
||||
public:
|
||||
|
||||
+3
-1
@@ -297,7 +297,8 @@ void LinearForm::Assemble()
|
||||
tr = mesh->GetBdrFaceTransformations(i);
|
||||
if (tr != NULL)
|
||||
{
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs);
|
||||
mfem::DofTransformation doftrans;
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs, doftrans);
|
||||
for (int k = 0; k < boundary_face_integs.Size(); k++)
|
||||
{
|
||||
if (boundary_face_integs_marker[k] &&
|
||||
@@ -307,6 +308,7 @@ void LinearForm::Assemble()
|
||||
boundary_face_integs[k]->
|
||||
AssembleRHSElementVect(*fes->GetFE(tr->Elem1No),
|
||||
*tr, elemvect);
|
||||
doftrans.TransformDual(elemvect);
|
||||
AddElementVector (vdofs, elemvect);
|
||||
}
|
||||
}
|
||||
|
||||
+2
-2
@@ -164,8 +164,8 @@ private:
|
||||
|
||||
public:
|
||||
/// Constructs the domain integrator $ (Q, \nabla v) $
|
||||
DomainLFGradIntegrator(VectorCoefficient &QF)
|
||||
: DeltaLFIntegrator(QF), Q(QF) { }
|
||||
DomainLFGradIntegrator(VectorCoefficient &QF, const IntegrationRule *ir = NULL)
|
||||
: DeltaLFIntegrator(QF, ir), Q(QF) { }
|
||||
|
||||
bool SupportsDevice() const override { return true; }
|
||||
|
||||
|
||||
+6
-5
@@ -158,15 +158,16 @@ void LORBase::ConstructLocalDofPermutation(Array<int> &perm_) const
|
||||
int i;
|
||||
i = dofmap_lor[off_lor + i1 + i2*2];
|
||||
int s1 = i < 0 ? -1 : 1;
|
||||
int idof_lor = vdof_lor[absdof(i)];
|
||||
int idof_lor = vdof_lor[UnsignIndex(i)];
|
||||
i = dofmap_ho[off_ho + i1*n1 + i2*n2];
|
||||
int s2 = i < 0 ? -1 : 1;
|
||||
int idof_ho = vdof_ho[absdof(i)];
|
||||
int idof_ho = vdof_ho[UnsignIndex(i)];
|
||||
int s3 = idof_lor < 0 ? -1 : 1;
|
||||
int s4 = idof_ho < 0 ? -1 : 1;
|
||||
int s = s1*s2*s3*s4;
|
||||
i = absdof(idof_ho);
|
||||
perm_[absdof(idof_lor)] = s < 0 ? -1-absdof(i) : absdof(i);
|
||||
i = UnsignIndex(idof_ho);
|
||||
perm_[UnsignIndex(idof_lor)] = s < 0 ? -1-UnsignIndex(i) :
|
||||
UnsignIndex(i);
|
||||
}
|
||||
}
|
||||
};
|
||||
@@ -232,7 +233,7 @@ void LORBase::ConstructDofPermutation() const
|
||||
int j = l_perm[i];
|
||||
int s = j < 0 ? -1 : 1;
|
||||
int t_i = pfes_lor->GetLocalTDofNumber(i);
|
||||
int t_j = pfes_ho->GetLocalTDofNumber(absdof(j));
|
||||
int t_j = pfes_ho->GetLocalTDofNumber(UnsignIndex(j));
|
||||
// Either t_i and t_j both -1, or both non-negative
|
||||
if ((t_i < 0 && t_j >=0) || (t_j < 0 && t_i >= 0))
|
||||
{
|
||||
|
||||
@@ -57,8 +57,6 @@ private:
|
||||
/// values (after temporarily changing them for LOR assembly).
|
||||
void ResetIntegrationRules(GetIntegratorsFn get_integrators);
|
||||
|
||||
static inline int absdof(int i) { return i < 0 ? -1-i : i; }
|
||||
|
||||
protected:
|
||||
enum FESpaceType { H1, ND, RT, L2, INVALID };
|
||||
|
||||
|
||||
+41
-47
@@ -424,7 +424,7 @@ void ParFiniteElementSpace::GetGroupComm(
|
||||
{
|
||||
if (ind[l] < 0)
|
||||
{
|
||||
dofs[l] = m + (-1-ind[l]);
|
||||
dofs[l] = m + FlipIndexSign(ind[l]);
|
||||
if (g_ldof_sign)
|
||||
{
|
||||
(*g_ldof_sign)[dofs[l]] = -1;
|
||||
@@ -462,7 +462,7 @@ void ParFiniteElementSpace::GetGroupComm(
|
||||
{
|
||||
if (ind[l] < 0)
|
||||
{
|
||||
dofs[l] = m + (-1-ind[l]);
|
||||
dofs[l] = m + FlipIndexSign(ind[l]);
|
||||
if (g_ldof_sign)
|
||||
{
|
||||
(*g_ldof_sign)[dofs[l]] = -1;
|
||||
@@ -500,7 +500,7 @@ void ParFiniteElementSpace::GetGroupComm(
|
||||
{
|
||||
if (ind[l] < 0)
|
||||
{
|
||||
dofs[l] = m + (-1-ind[l]);
|
||||
dofs[l] = m + FlipIndexSign(ind[l]);
|
||||
if (g_ldof_sign)
|
||||
{
|
||||
(*g_ldof_sign)[dofs[l]] = -1;
|
||||
@@ -538,16 +538,16 @@ void ParFiniteElementSpace::ApplyLDofSigns(Array<int> &dofs) const
|
||||
{
|
||||
if (dofs[i] < 0)
|
||||
{
|
||||
if (ldof_sign[-1-dofs[i]] < 0)
|
||||
if (ldof_sign[FlipIndexSign(dofs[i])] < 0)
|
||||
{
|
||||
dofs[i] = -1-dofs[i];
|
||||
dofs[i] = FlipIndexSign(dofs[i]);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
if (ldof_sign[dofs[i]] < 0)
|
||||
{
|
||||
dofs[i] = -1-dofs[i];
|
||||
dofs[i] = FlipIndexSign(dofs[i]);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -699,7 +699,8 @@ void ParFiniteElementSpace::GetSharedEdgeDofs(
|
||||
for (int i = 0; i < dofs.Size(); i++)
|
||||
{
|
||||
const int di = dofs[i];
|
||||
dofs[i] = (di >= 0) ? rdofs[di] : -1-rdofs[-1-di];
|
||||
dofs[i] = di >= 0 ? rdofs[di] :
|
||||
FlipIndexSign(rdofs[FlipIndexSign(di)]);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -723,7 +724,8 @@ void ParFiniteElementSpace::GetSharedTriangleDofs(
|
||||
for (int i = 0; i < dofs.Size(); i++)
|
||||
{
|
||||
const int di = dofs[i];
|
||||
dofs[i] = (di >= 0) ? rdofs[di] : -1-rdofs[-1-di];
|
||||
dofs[i] = di >= 0 ? rdofs[di] :
|
||||
FlipIndexSign(rdofs[FlipIndexSign(di)]);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -747,7 +749,8 @@ void ParFiniteElementSpace::GetSharedQuadrilateralDofs(
|
||||
for (int i = 0; i < dofs.Size(); i++)
|
||||
{
|
||||
const int di = dofs[i];
|
||||
dofs[i] = (di >= 0) ? rdofs[di] : -1-rdofs[-1-di];
|
||||
dofs[i] = (di >= 0) ? rdofs[di] :
|
||||
FlipIndexSign(rdofs[FlipIndexSign(di)]);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1487,7 +1490,7 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
|
||||
GetElementVDofs(my_elems[i], ldofs);
|
||||
for (int j = 0; j < ldofs.Size(); j++)
|
||||
{
|
||||
int ldof = (ldofs[j] >= 0 ? ldofs[j] : -1-ldofs[j]);
|
||||
int ldof = UnsignIndex(ldofs[j]);
|
||||
|
||||
if (ldof_marker[ldof] != fn)
|
||||
{
|
||||
@@ -1548,7 +1551,7 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
|
||||
GetElementVDofs(my_elems[i], ldofs);
|
||||
for (int j = 0; j < ldofs.Size(); j++)
|
||||
{
|
||||
int ldof = (ldofs[j] >= 0 ? ldofs[j] : -1-ldofs[j]);
|
||||
int ldof = UnsignIndex(ldofs[j]);
|
||||
|
||||
if (ldof_marker[ldof] != fn)
|
||||
{
|
||||
@@ -1573,14 +1576,15 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
|
||||
|
||||
for (int i = 0; i < num_ldofs; i++)
|
||||
{
|
||||
int ldof = (ldofs_fn[i] >= 0 ? ldofs_fn[i] : -1-ldofs_fn[i]);
|
||||
int ldof = UnsignIndex(ldofs_fn[i]);
|
||||
ldof_marker[ldof] = i;
|
||||
}
|
||||
|
||||
for ( ; j < j_end; j++)
|
||||
{
|
||||
int ldof = (send_J[j] >= 0 ? send_J[j] : -1-send_J[j]);
|
||||
send_J[j] = (send_J[j] >= 0 ? ldof_marker[ldof] : -1-ldof_marker[ldof]);
|
||||
const int ldof = UnsignIndex(send_J[j]);
|
||||
send_J[j] = (send_J[j] >= 0 ? ldof_marker[ldof] :
|
||||
FlipIndexSign(ldof_marker[ldof]));
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1672,12 +1676,7 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
|
||||
{
|
||||
for (int j_end = face_nbr_ldof.GetI()[fn+1]; j < j_end; j++)
|
||||
{
|
||||
int ldof = face_nbr_ldof.GetJ()[j];
|
||||
if (ldof < 0)
|
||||
{
|
||||
ldof = -1-ldof;
|
||||
}
|
||||
|
||||
const int ldof = UnsignIndex(face_nbr_ldof.GetJ()[j]);
|
||||
face_nbr_glob_dof_map[j] = dof_face_nbr_offsets[fn] + ldof;
|
||||
}
|
||||
}
|
||||
@@ -1721,7 +1720,7 @@ void ParFiniteElementSpace::GetFaceNbrFaceVDofs(int i, Array<int> &vdofs) const
|
||||
MFEM_ASSERT(Nonconforming() && i >= pmesh->GetNumFaces(), "");
|
||||
int el1, el2, inf1, inf2;
|
||||
pmesh->GetFaceElements(i, &el1, &el2);
|
||||
el2 = -1 - el2;
|
||||
el2 = FlipIndexSign(el2);
|
||||
pmesh->GetFaceInfos(i, &inf1, &inf2);
|
||||
MFEM_ASSERT(0 <= el2 && el2 < face_nbr_element_dof.Size(), "");
|
||||
const int nd = face_nbr_element_dof.RowSize(el2);
|
||||
@@ -1737,7 +1736,8 @@ void ParFiniteElementSpace::GetFaceNbrFaceVDofs(int i, Array<int> &vdofs) const
|
||||
for (int j = 0; j < vdofs.Size(); j++)
|
||||
{
|
||||
const int ldof = vdofs[j];
|
||||
vdofs[j] = (ldof >= 0) ? vol_vdofs[ldof] : -1-vol_vdofs[-1-ldof];
|
||||
vdofs[j] = (ldof >= 0) ? vol_vdofs[ldof] :
|
||||
FlipIndexSign(vol_vdofs[FlipIndexSign(ldof)]);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -2061,8 +2061,8 @@ void ParFiniteElementSpace::GetGhostFaceDofs(const MeshId &face_id,
|
||||
|
||||
for (int j = 0; j < ne; j++)
|
||||
{
|
||||
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j])
|
||||
/* */ : (-1 - (first + (-1 - ind[j])));
|
||||
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j]) :
|
||||
FlipIndexSign(first + FlipIndexSign(ind[j]));
|
||||
}
|
||||
}
|
||||
else
|
||||
@@ -2072,8 +2072,8 @@ void ParFiniteElementSpace::GetGhostFaceDofs(const MeshId &face_id,
|
||||
const int *ind = fec->DofOrderForOrientation(Geometry::SEGMENT, Eo[i]);
|
||||
for (int j = 0; j < ne; j++)
|
||||
{
|
||||
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j])
|
||||
/* */ : (-1 - (first + (-1 - ind[j])));
|
||||
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j]) :
|
||||
FlipIndexSign(first + FlipIndexSign(ind[j]));
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -2866,7 +2866,7 @@ void NeighborRowMessage::Encode(int rank)
|
||||
|
||||
if (ind && (edof = ind[edof]) < 0)
|
||||
{
|
||||
edof = -1 - edof;
|
||||
edof = FlipIndexSign(edof);
|
||||
s = -1;
|
||||
}
|
||||
|
||||
@@ -3067,10 +3067,10 @@ void NeighborRowMessage::Decode(int rank)
|
||||
|
||||
// If edof arrived with a negative index, flip it, and the scaling.
|
||||
real_t s = (edof < 0) ? -1.0 : 1.0;
|
||||
edof = (edof < 0) ? -1 - edof : edof;
|
||||
edof = UnsignIndex(edof);
|
||||
if (ind && (edof = ind[edof]) < 0)
|
||||
{
|
||||
edof = -1 - edof;
|
||||
edof = FlipIndexSign(edof);
|
||||
s *= -1.0;
|
||||
}
|
||||
|
||||
@@ -3121,10 +3121,10 @@ void NeighborRowMessage::Decode(int rank)
|
||||
|
||||
// If edof arrived with a negative index, flip it, and the scaling.
|
||||
s = (edof < 0) ? -1.0 : 1.0;
|
||||
edof = (edof < 0) ? -1 - edof : edof;
|
||||
edof = UnsignIndex(edof);
|
||||
if (ind && (edof = ind[edof]) < 0)
|
||||
{
|
||||
edof = -1 - edof;
|
||||
edof = FlipIndexSign(edof);
|
||||
s *= -1.0;
|
||||
}
|
||||
|
||||
@@ -4405,12 +4405,9 @@ ParFiniteElementSpace::RebalanceMatrix(int old_ndofs,
|
||||
{
|
||||
for (int j = 0; j < dofs.Size(); j++)
|
||||
{
|
||||
int row = DofToVDof(dofs[j], vd);
|
||||
if (row < 0) { row = -1 - row; }
|
||||
|
||||
int col = DofToVDof(old_dofs[j], vd, old_ndofs);
|
||||
if (col < 0) { col = -1 - col; }
|
||||
|
||||
const int row = UnsignIndex(DofToVDof(dofs[j], vd));
|
||||
const int col = UnsignIndex(DofToVDof(old_dofs[j], vd,
|
||||
old_ndofs));
|
||||
i_diag[row] = col;
|
||||
}
|
||||
}
|
||||
@@ -4435,9 +4432,7 @@ ParFiniteElementSpace::RebalanceMatrix(int old_ndofs,
|
||||
{
|
||||
for (int j = 0; j < dofs.Size(); j++)
|
||||
{
|
||||
int row = DofToVDof(dofs[j], vd);
|
||||
if (row < 0) { row = -1 - row; }
|
||||
|
||||
const int row = UnsignIndex(DofToVDof(dofs[j], vd));
|
||||
if (i_diag[row] == i_diag[row+1]) // diag row empty?
|
||||
{
|
||||
i_offd[row] = old_dofs[j + vd * dofs.Size()];
|
||||
@@ -4546,9 +4541,9 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
|
||||
{
|
||||
const Embedding &emb = dtrans.embeddings[k];
|
||||
|
||||
int fine_rank = old_ranks[k];
|
||||
int coarse_rank = (emb.parent < 0) ? (-1 - emb.parent)
|
||||
: old_pncmesh->ElementRank(emb.parent);
|
||||
const int fine_rank = old_ranks[k];
|
||||
const int coarse_rank = (emb.parent < 0) ? FlipIndexSign(emb.parent)
|
||||
: old_pncmesh->ElementRank(emb.parent);
|
||||
|
||||
if (coarse_rank != MyRank && fine_rank == MyRank)
|
||||
{
|
||||
@@ -4636,8 +4631,8 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
|
||||
{
|
||||
if (!std::isfinite(lR(i, 0))) { continue; }
|
||||
|
||||
int r = DofToVDof(dofs[i], vd);
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
const int r = DofToVDof(dofs[i], vd);
|
||||
const int m = UnsignIndex(r);
|
||||
|
||||
if (is_dg || !mark[m])
|
||||
{
|
||||
@@ -4686,8 +4681,7 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
|
||||
{
|
||||
if (!std::isfinite(lR(i, 0))) { continue; }
|
||||
|
||||
int r = DofToVDof(dofs[i], vd);
|
||||
int m = (r >= 0) ? r : (-1 - r);
|
||||
const int m = UnsignIndex(DofToVDof(dofs[i], vd));
|
||||
|
||||
if (is_dg || !mark[m])
|
||||
{
|
||||
|
||||
+48
-1
@@ -545,6 +545,8 @@ void ParGridFunction::GetElementDofValues(int el, Vector &dof_vals) const
|
||||
|
||||
void ParGridFunction::ProjectCoefficient(Coefficient &coeff, ProjectType type)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == 1,
|
||||
"Cannot project scalar coefficient onto vector ParGridFunction");
|
||||
DeltaCoefficient *delta_c = dynamic_cast<DeltaCoefficient *>(&coeff);
|
||||
|
||||
if (delta_c == NULL)
|
||||
@@ -715,7 +717,8 @@ void ParGridFunction::ProjectCoefficientElementL2(VectorCoefficient &vcoeff)
|
||||
}
|
||||
|
||||
|
||||
void ParGridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff)
|
||||
void ParGridFunction::ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff)
|
||||
{
|
||||
// local maximal element attribute for each dof
|
||||
Array<int> ldof_attr;
|
||||
@@ -761,6 +764,9 @@ void ParGridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff)
|
||||
|
||||
void ParGridFunction::ProjectDiscCoefficient(Coefficient &coeff, AvgType type)
|
||||
{
|
||||
MFEM_VERIFY(
|
||||
VectorDim() == 1,
|
||||
"Cannot project scalar coefficient onto a vector ParGridFunction");
|
||||
// Harmonic (x1 ... xn) = [ (1/x1 + ... + 1/xn) / n ]^-1.
|
||||
// Arithmetic(x1 ... xn) = (x1 + ... + xn) / n.
|
||||
|
||||
@@ -786,6 +792,8 @@ void ParGridFunction::ProjectDiscCoefficient(VectorCoefficient &vcoeff,
|
||||
// Harmonic (x1 ... xn) = [ (1/x1 + ... + 1/xn) / n ]^-1.
|
||||
// Arithmetic(x1 ... xn) = (x1 + ... + xn) / n.
|
||||
|
||||
MFEM_VERIFY(VectorDim() == vcoeff.GetVDim(), "vcoeff vdim != VectorDim()");
|
||||
|
||||
// Number of zones that contain a given dof.
|
||||
Array<int> zones_per_vdof;
|
||||
AccumulateAndCountZones(vcoeff, type, zones_per_vdof);
|
||||
@@ -858,6 +866,12 @@ void ParGridFunction::ProjectBdrCoefficient(
|
||||
#endif
|
||||
}
|
||||
|
||||
void ParGridFunction::ProjectBdrCoefficient(VectorCoefficient &vcoeff,
|
||||
const Array<int> &attr)
|
||||
{
|
||||
ProjectBdrCoefficient(NULL, &vcoeff, attr);
|
||||
}
|
||||
|
||||
void ParGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient &vcoeff,
|
||||
const Array<int> &bdr_attr)
|
||||
{
|
||||
@@ -1568,6 +1582,39 @@ PLBound ParGridFunction::GetBounds(Vector &lower, Vector &upper,
|
||||
return plb;
|
||||
}
|
||||
|
||||
std::pair<real_t, real_t> ParGridFunction::EstimateFunctionMinimum(
|
||||
const int vdim, const PLBound &plb, const int max_depth,
|
||||
const real_t tol) const
|
||||
{
|
||||
std::pair<real_t, real_t> minmax =
|
||||
GridFunction::EstimateFunctionMinimum(vdim, plb, max_depth, tol);
|
||||
|
||||
real_t glob_min_lower = minmax.first;
|
||||
real_t glob_min_upper = minmax.second;
|
||||
MPI_Allreduce(MPI_IN_PLACE, &glob_min_lower, 1,
|
||||
MFEM_MPI_REAL_T, MPI_MIN, pfes->GetComm());
|
||||
MPI_Allreduce(MPI_IN_PLACE, &glob_min_upper, 1,
|
||||
MFEM_MPI_REAL_T, MPI_MIN, pfes->GetComm());
|
||||
|
||||
return std::make_pair(glob_min_lower, glob_min_upper);
|
||||
}
|
||||
|
||||
std::pair<real_t, real_t> ParGridFunction::EstimateFunctionMaximum(
|
||||
const int vdim, const PLBound &plb, const int max_depth,
|
||||
const real_t tol) const
|
||||
{
|
||||
std::pair<real_t, real_t> minmax =
|
||||
GridFunction::EstimateFunctionMaximum(vdim, plb, max_depth, tol);
|
||||
|
||||
real_t glob_max_lower = minmax.first;
|
||||
real_t glob_max_upper = minmax.second;
|
||||
MPI_Allreduce(MPI_IN_PLACE, &glob_max_lower, 1,
|
||||
MFEM_MPI_REAL_T, MPI_MAX, pfes->GetComm());
|
||||
MPI_Allreduce(MPI_IN_PLACE, &glob_max_upper, 1,
|
||||
MFEM_MPI_REAL_T, MPI_MAX, pfes->GetComm());
|
||||
return std::make_pair(glob_max_lower, glob_max_upper);
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
+19
-7
@@ -63,6 +63,12 @@ protected:
|
||||
void ProjectBdrCoefficient(Coefficient *coeff[], VectorCoefficient *vcoeff,
|
||||
const Array<int> &attr);
|
||||
|
||||
/** @brief Project a discontinuous (vector) coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
virtual void ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff) override;
|
||||
|
||||
public:
|
||||
ParGridFunction() { pfes = NULL; }
|
||||
|
||||
@@ -268,11 +274,6 @@ public:
|
||||
ProjectType type = ProjectType::DEFAULT) override;
|
||||
|
||||
using GridFunction::ProjectDiscCoefficient;
|
||||
/** @brief Project a discontinuous vector coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
void ProjectDiscCoefficient(VectorCoefficient &coeff) override;
|
||||
|
||||
void ProjectDiscCoefficient(Coefficient &coeff, AvgType type) override;
|
||||
|
||||
void ProjectDiscCoefficient(VectorCoefficient &vcoeff, AvgType type) override;
|
||||
@@ -280,8 +281,7 @@ public:
|
||||
using GridFunction::ProjectBdrCoefficient;
|
||||
|
||||
void ProjectBdrCoefficient(VectorCoefficient &vcoeff,
|
||||
const Array<int> &attr) override
|
||||
{ ProjectBdrCoefficient(NULL, &vcoeff, attr); }
|
||||
const Array<int> &attr) override;
|
||||
|
||||
void ProjectBdrCoefficient(Coefficient *coeff[],
|
||||
const Array<int> &attr) override
|
||||
@@ -609,6 +609,18 @@ public:
|
||||
PLBound GetBounds(Vector &lower, Vector &upper,
|
||||
const int ref_factor=1, const int vdim=-1) const override;
|
||||
|
||||
/** @brief Estimate the GridFunction minimum across all elements. */
|
||||
std::pair<real_t, real_t> EstimateFunctionMinimum(const int vdim,
|
||||
const PLBound &plb,
|
||||
const int max_depth,
|
||||
const real_t tol) const override;
|
||||
|
||||
/** @brief Estimate the GridFunction maximum across all elements. */
|
||||
std::pair<real_t, real_t> EstimateFunctionMaximum(const int vdim,
|
||||
const PLBound &plb,
|
||||
const int max_depth,
|
||||
const real_t tol) const override;
|
||||
|
||||
/** Save the local portion of the ParGridFunction. This differs from the
|
||||
serial GridFunction::Save in that it takes into account the signs of
|
||||
the local dofs. */
|
||||
|
||||
+11
-5
@@ -321,12 +321,17 @@ void ParL2FaceRestriction::DoubleValuedConformingMult(
|
||||
const int vd = vdim;
|
||||
const bool t = byvdim;
|
||||
const int threshold = ndofs;
|
||||
const int nsdofs = pfes.GetFaceNbrVSize();
|
||||
const int nsdofs = pfes.GetFaceNbrVSize() / vd;
|
||||
auto d_indices1 = scatter_indices1.Read();
|
||||
auto d_indices2 = scatter_indices2.Read();
|
||||
auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
|
||||
auto d_x_shared = Reshape(face_nbr_data.Read(),
|
||||
t?vd:nsdofs, t?nsdofs:vd);
|
||||
const int ne_shared = nsdofs / elem_dofs;
|
||||
const int nedof = elem_dofs;
|
||||
// Note: the shape of face_nbr_data, as determined by
|
||||
// ParFiniteElementSpace::ExchangeFaceNbrData, is (elem_dofs, vdim,
|
||||
// ne_shared), independent of the ordering (byNODES or byVDIM) of the finite
|
||||
// element space.
|
||||
auto d_x_shared = Reshape(face_nbr_data.Read(), elem_dofs, vd, ne_shared);
|
||||
auto d_y = Reshape(y.Write(), nface_dofs, vd, 2, nf);
|
||||
mfem::forall(nfdofs, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
@@ -346,8 +351,9 @@ void ParL2FaceRestriction::DoubleValuedConformingMult(
|
||||
}
|
||||
else if (idx2>=threshold) // shared boundary
|
||||
{
|
||||
d_y(dof, c, 1, face) = d_x_shared(t?c:(idx2-threshold),
|
||||
t?(idx2-threshold):c);
|
||||
const int e_shared = (idx2 - threshold) / nedof;
|
||||
const int i_shared = (idx2 - threshold) % nedof;
|
||||
d_y(dof, c, 1, face) = d_x_shared(i_shared,c,e_shared);
|
||||
}
|
||||
else // true boundary
|
||||
{
|
||||
|
||||
+1
-4
@@ -271,10 +271,7 @@ inline void QuadratureFunction::GetValues(
|
||||
const int s_offset = qspace->Offset(idx);
|
||||
const int sl_size = qspace->Offset(idx + 1) - s_offset;
|
||||
// Make the values matrix memory an alias of the quadrature function memory
|
||||
Memory<real_t> &values_mem = values.GetMemory();
|
||||
values_mem.Delete();
|
||||
values_mem.MakeAlias(GetMemory(), vdim*s_offset, vdim*sl_size);
|
||||
values.SetSize(vdim, sl_size);
|
||||
values.MakeRef(GetMemory(), vdim*s_offset, vdim, sl_size);
|
||||
}
|
||||
|
||||
inline void QuadratureFunction::GetValues(
|
||||
|
||||
+8
-9
@@ -334,17 +334,16 @@ template<int DIM, int SDIM, int D1D, int Q1D>
|
||||
QuadratureInterpolator::DetKernelType
|
||||
QuadratureInterpolator::DetKernels::Kernel()
|
||||
{
|
||||
if (DIM == 1)
|
||||
if constexpr (DIM == 1)
|
||||
{
|
||||
if (SDIM == 1) { return internal::quadrature_interpolator::Det1D; }
|
||||
else if (SDIM == 2) { return internal::quadrature_interpolator::Det1DSurface<D1D, Q1D, 2>; }
|
||||
else if (SDIM == 3) { return internal::quadrature_interpolator::Det1DSurface<D1D, Q1D, 3>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
if constexpr (SDIM == 1) { return internal::quadrature_interpolator::Det1D; }
|
||||
else if constexpr (SDIM == 2) { return internal::quadrature_interpolator::Det1DSurface<D1D, Q1D, 2>; }
|
||||
else if constexpr (SDIM == 3) { return internal::quadrature_interpolator::Det1DSurface<D1D, Q1D, 3>; }
|
||||
}
|
||||
else if (DIM == 2 && SDIM == 2) { return internal::quadrature_interpolator::Det2D<D1D, Q1D>; }
|
||||
else if (DIM == 2 && SDIM == 3) { return internal::quadrature_interpolator::Det2DSurface<D1D, Q1D>; }
|
||||
else if (DIM == 3) { return internal::quadrature_interpolator::Det3D<D1D, Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
else if constexpr (DIM == 2 && SDIM == 2) { return internal::quadrature_interpolator::Det2D<D1D, Q1D>; }
|
||||
else if constexpr (DIM == 2 && SDIM == 3) { return internal::quadrature_interpolator::Det2DSurface<D1D, Q1D>; }
|
||||
else if constexpr (DIM == 3) { return internal::quadrature_interpolator::Det3D<D1D, Q1D>; }
|
||||
MFEM_ABORT("");
|
||||
}
|
||||
|
||||
/// @endcond
|
||||
|
||||
@@ -203,10 +203,10 @@ template<int DIM, QVectorLayout Q_LAYOUT,
|
||||
QuadratureInterpolator::TensorEvalKernelType
|
||||
QuadratureInterpolator::TensorEvalKernels::Kernel()
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::Values1D<Q_LAYOUT>; }
|
||||
else if (DIM == 2) { return internal::quadrature_interpolator::Values2D<Q_LAYOUT, VDIM, D1D, Q1D, NBZ>; }
|
||||
else if (DIM == 3) { return internal::quadrature_interpolator::Values3D<Q_LAYOUT, VDIM, D1D, Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
if constexpr (DIM == 1) { return internal::quadrature_interpolator::Values1D<Q_LAYOUT>; }
|
||||
else if constexpr (DIM == 2) { return internal::quadrature_interpolator::Values2D<Q_LAYOUT, VDIM, D1D, Q1D, NBZ>; }
|
||||
else if constexpr (DIM == 3) { return internal::quadrature_interpolator::Values3D<Q_LAYOUT, VDIM, D1D, Q1D>; }
|
||||
MFEM_ABORT("");
|
||||
}
|
||||
|
||||
/// @endcond
|
||||
|
||||
@@ -453,8 +453,15 @@ QuadratureInterpolator::TensorEvalHDivKernels::Kernel()
|
||||
{
|
||||
using namespace internal::quadrature_interpolator;
|
||||
static_assert(DIM == 2 || DIM == 3, "only DIM=2 and DIM=3 are implemented!");
|
||||
if (DIM == 2) { return EvalHDiv2D<Q_LAYOUT, FLAGS, D1D, Q1D>; }
|
||||
return EvalHDiv3D<Q_LAYOUT, FLAGS, D1D, Q1D>;
|
||||
if constexpr (DIM == 2)
|
||||
{
|
||||
return EvalHDiv2D<Q_LAYOUT, FLAGS, D1D, Q1D>;
|
||||
}
|
||||
else if constexpr (DIM == 3)
|
||||
{
|
||||
return EvalHDiv3D<Q_LAYOUT, FLAGS, D1D, Q1D>;
|
||||
}
|
||||
MFEM_ABORT("only DIM=2 and DIM=3 are implemented!");
|
||||
}
|
||||
|
||||
/// @endcond
|
||||
|
||||
@@ -592,10 +592,10 @@ template<int DIM, QVectorLayout Q_LAYOUT, bool GRAD_PHYS, int VDIM, int D1D,
|
||||
QuadratureInterpolator::GradKernelType
|
||||
QuadratureInterpolator::GradKernels::Kernel()
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::Derivatives1D<Q_LAYOUT, GRAD_PHYS>; }
|
||||
else if (DIM == 2) { return internal::quadrature_interpolator::Derivatives2D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D, NBZ>; }
|
||||
else if (DIM == 3) { return internal::quadrature_interpolator::Derivatives3D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
if constexpr (DIM == 1) { return internal::quadrature_interpolator::Derivatives1D<Q_LAYOUT, GRAD_PHYS>; }
|
||||
else if constexpr (DIM == 2) { return internal::quadrature_interpolator::Derivatives2D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D, NBZ>; }
|
||||
else if constexpr (DIM == 3) { return internal::quadrature_interpolator::Derivatives3D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D>; }
|
||||
MFEM_ABORT("");
|
||||
}
|
||||
|
||||
template<int DIM, QVectorLayout Q_LAYOUT, bool GRAD_PHYS, int VDIM, int D1D,
|
||||
@@ -603,10 +603,10 @@ template<int DIM, QVectorLayout Q_LAYOUT, bool GRAD_PHYS, int VDIM, int D1D,
|
||||
QuadratureInterpolator::CollocatedGradKernelType
|
||||
QuadratureInterpolator::CollocatedGradKernels::Kernel()
|
||||
{
|
||||
if (DIM == 1) { return internal::quadrature_interpolator::CollocatedDerivatives1D<Q_LAYOUT, GRAD_PHYS>; }
|
||||
else if (DIM == 2) { return internal::quadrature_interpolator::CollocatedDerivatives2D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, NBZ>; }
|
||||
else if (DIM == 3) { return internal::quadrature_interpolator::CollocatedDerivatives3D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
if constexpr (DIM == 1) { return internal::quadrature_interpolator::CollocatedDerivatives1D<Q_LAYOUT, GRAD_PHYS>; }
|
||||
else if constexpr (DIM == 2) { return internal::quadrature_interpolator::CollocatedDerivatives2D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, NBZ>; }
|
||||
else if constexpr (DIM == 3) { return internal::quadrature_interpolator::CollocatedDerivatives3D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D>; }
|
||||
MFEM_ABORT("");
|
||||
}
|
||||
|
||||
/// @endcond
|
||||
|
||||
@@ -752,10 +752,10 @@ template <int DIM, int VDIM, int ND, int NQ>
|
||||
EvalKernel QuadratureInterpolator::EvalKernels::Kernel()
|
||||
{
|
||||
using namespace internal::quadrature_interpolator;
|
||||
if (DIM == 1) { return Eval1D; }
|
||||
else if (DIM == 2) { return Eval2D<VDIM,ND,NQ>; }
|
||||
else if (DIM == 3) { return Eval3D<VDIM,ND,NQ>; }
|
||||
else { MFEM_ABORT(""); }
|
||||
if constexpr (DIM == 1) { return Eval1D; }
|
||||
else if constexpr (DIM == 2) { return Eval2D<VDIM,ND,NQ>; }
|
||||
else if constexpr (DIM == 3) { return Eval3D<VDIM,ND,NQ>; }
|
||||
MFEM_ABORT("");
|
||||
}
|
||||
|
||||
template <int DIM>
|
||||
|
||||
+7
-12
@@ -844,8 +844,6 @@ void ConformingFaceRestriction::ComputeGatherIndices(
|
||||
gather_offsets[0] = 0;
|
||||
}
|
||||
|
||||
static inline int absdof(int i) { return i < 0 ? -1-i : i; }
|
||||
|
||||
void ConformingFaceRestriction::SetFaceDofsScatterIndices(
|
||||
const Mesh::FaceInformation &face,
|
||||
const int face_index,
|
||||
@@ -868,9 +866,9 @@ void ConformingFaceRestriction::SetFaceDofsScatterIndices(
|
||||
{
|
||||
const int lex_volume_dof = face_map[face_dof];
|
||||
const int s_volume_dof = AsConst(vol_dof_map)[lex_volume_dof]; // signed
|
||||
const int volume_dof = absdof(s_volume_dof);
|
||||
const int volume_dof = UnsignIndex(s_volume_dof);
|
||||
const int s_global_dof = elem_map[elem_index*elem_dofs + volume_dof];
|
||||
const int global_dof = absdof(s_global_dof);
|
||||
const int global_dof = UnsignIndex(s_global_dof);
|
||||
const int restriction_dof = face_dofs*face_index + face_dof;
|
||||
scatter_indices[restriction_dof] = s_global_dof;
|
||||
++gather_offsets[global_dof + 1];
|
||||
@@ -897,10 +895,10 @@ void ConformingFaceRestriction::SetFaceDofsGatherIndices(
|
||||
{
|
||||
const int lex_volume_dof = face_map[face_dof];
|
||||
const int s_volume_dof = AsConst(vol_dof_map)[lex_volume_dof];
|
||||
const int volume_dof = absdof(s_volume_dof);
|
||||
const int volume_dof = UnsignIndex(s_volume_dof);
|
||||
const int s_global_dof = elem_map[elem_index*elem_dofs + volume_dof];
|
||||
const int sgn = (s_global_dof >= 0) ? 1 : -1;
|
||||
const int global_dof = absdof(s_global_dof);
|
||||
const int global_dof = UnsignIndex(s_global_dof);
|
||||
const int restriction_dof = face_dofs*face_index + face_dof;
|
||||
const int s_restriction_dof = (sgn >= 0) ? restriction_dof : -1 -
|
||||
restriction_dof;
|
||||
@@ -1400,20 +1398,17 @@ void L2FaceRestriction::PermuteAndSetSharedFaceDofsScatterIndices2(
|
||||
const int dim = fes.GetMesh()->Dimension();
|
||||
const int dof1d = fes.GetTypicalFE()->GetOrder()+1;
|
||||
fes.GetTypicalFE()->GetFaceMap(face_id2, face_map);
|
||||
Array<int> face_nbr_dofs;
|
||||
const ParFiniteElementSpace &pfes =
|
||||
static_cast<const ParFiniteElementSpace&>(this->fes);
|
||||
pfes.GetFaceNbrElementVDofs(elem_index, face_nbr_dofs);
|
||||
|
||||
for (int face_dof_elem1 = 0; face_dof_elem1 < face_dofs; ++face_dof_elem1)
|
||||
{
|
||||
const int face_dof_elem2 = PermuteFaceL2(dim, face_id1, face_id2,
|
||||
orientation, dof1d, face_dof_elem1);
|
||||
const int volume_dof_elem2 = face_map[face_dof_elem2];
|
||||
const int global_dof_elem2 = face_nbr_dofs[volume_dof_elem2];
|
||||
// Encode the volume DOF index and element index
|
||||
const int global_dof_elem2 = elem_index*elem_dofs + volume_dof_elem2;
|
||||
const int restriction_dof_elem2 = face_dofs*face_index + face_dof_elem1;
|
||||
// Trick to differentiate dof location inter/shared
|
||||
scatter_indices2[restriction_dof_elem2] = ndofs+global_dof_elem2;
|
||||
scatter_indices2[restriction_dof_elem2] = ndofs + global_dof_elem2;
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
+5
-2
@@ -4102,8 +4102,11 @@ void TMOP_Integrator::GetSurfaceFittingErrors(const Vector &d_loc,
|
||||
#ifdef MFEM_USE_MPI
|
||||
// Don't count the overlapping DOFs in parallel.
|
||||
// The pfes might be ordered byVDIM, while the loop goes consecutively.
|
||||
const int dof_i = pfes->DofToVDof(i, 0);
|
||||
if (parallel && pfes->GetLocalTDofNumber(dof_i) < 0) { continue; }
|
||||
if (parallel)
|
||||
{
|
||||
const int dof_i = pfes->DofToVDof(i, 0);
|
||||
if (pfes->GetLocalTDofNumber(dof_i) < 0) { continue; }
|
||||
}
|
||||
#endif
|
||||
|
||||
dof_cnt++;
|
||||
|
||||
+24
-1
@@ -114,10 +114,22 @@ public:
|
||||
Array<T> &operator=(const Array<T> &src) { src.Copy(*this); return *this; }
|
||||
|
||||
/// Move assignment operator
|
||||
/** If *this is a non-owning view (e.g., from MakeRef()), the data is copied
|
||||
so that the base is also modified. */
|
||||
Array<T> &operator=(Array<T> &&src)
|
||||
{
|
||||
if (this == &src) { return *this; }
|
||||
Swap(src); // Swap does not use move assignment!
|
||||
// If *this is a non-owning view (alias), and its capacity is sufficient
|
||||
// to contain src, then copy into *this so that the alias's base memory is
|
||||
// modified.
|
||||
if (!OwnsData() && Capacity() >= src.Size())
|
||||
{
|
||||
*this = src; // Copy assignment.
|
||||
}
|
||||
else
|
||||
{
|
||||
Swap(src); // Swap the pointers only.
|
||||
}
|
||||
src.DeleteAll();
|
||||
return *this;
|
||||
}
|
||||
@@ -251,6 +263,9 @@ public:
|
||||
/// Make this Array a reference to 'master'.
|
||||
inline void MakeRef(const Array &master);
|
||||
|
||||
/// Make this Array a reference to the given sub-Memory of @a base.
|
||||
inline void MakeRef(Memory<T> &base, int offset, int size_);
|
||||
|
||||
/// Reset the Array to use the given external Memory @a mem and size @a s.
|
||||
/** If @a own_mem is false, the Array will not own any of the pointers of
|
||||
@a mem.
|
||||
@@ -1073,6 +1088,14 @@ inline void Array<T>::MakeRef(const Array &master)
|
||||
data.MakeAlias(master.GetMemory(), 0, size);
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::MakeRef(Memory<T> &base, int offset, int size_)
|
||||
{
|
||||
data.Delete();
|
||||
size = size_;
|
||||
data.MakeAlias(base, offset, size_);
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::NewMemoryAndSize(
|
||||
const Memory<T> &mem, int s, bool own_mem)
|
||||
|
||||
+24
-17
@@ -14,6 +14,7 @@
|
||||
|
||||
#include "../config/config.hpp"
|
||||
#include "array.hpp"
|
||||
#include "text.hpp"
|
||||
|
||||
#include <iostream>
|
||||
#include <map>
|
||||
@@ -247,7 +248,8 @@ inline void ArraysByName<T>::Print(std::ostream &os, int width) const
|
||||
os << data.size() << '\n';
|
||||
for (auto const &it : data)
|
||||
{
|
||||
os << '"' << it.first << '"' << '\n' << it.second.Size() << '\n';
|
||||
// Note: The method Load() can read any string formatted with std::quoted.
|
||||
os << std::quoted(it.first) << '\n' << it.second.Size() << '\n';
|
||||
it.second.Print(os, width > 0 ? width : it.second.Size());
|
||||
}
|
||||
}
|
||||
@@ -258,31 +260,36 @@ void ArraysByName<T>::Load(std::istream &in)
|
||||
int NumArrays;
|
||||
in >> NumArrays;
|
||||
|
||||
std::string ArrayLine, ArrayName;
|
||||
for (int i=0; i < NumArrays; i++)
|
||||
for (int i = 0; i < NumArrays; i++)
|
||||
{
|
||||
in >> std::ws;
|
||||
getline(in, ArrayLine);
|
||||
|
||||
std::size_t q0 = ArrayLine.find('"');
|
||||
std::size_t q1 = ArrayLine.rfind('"');
|
||||
|
||||
if (q0 != std::string::npos && q1 > q0)
|
||||
// Read the name:
|
||||
// - If the stream 'in' starts with " then parse it with the function
|
||||
// parse_quoted_string() from text.hpp. In this case, the name can be
|
||||
// empty. Note: this case allows for reading any string formatted using
|
||||
// std::quoted, e.g. as in the method Print().
|
||||
// - If the name does not start with " then the name ends with the first
|
||||
// white space character (and the white space character is not included
|
||||
// in the name). Since white space characters are skipped before reading
|
||||
// the name, there will be at least one non-white-space character in the
|
||||
// name in this case.
|
||||
std::string ArrayName;
|
||||
if (in.peek() == '"')
|
||||
{
|
||||
// Locate set name between first and last double quote
|
||||
ArrayName = ArrayLine.substr(q0+1,q1-q0-1);
|
||||
if (parse_quoted_string(ArrayName, in) != 0)
|
||||
{
|
||||
MFEM_ABORT("error parsing input!");
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
// If no double quotes found locate set name using white space
|
||||
q1 = ArrayLine.find(' ');
|
||||
ArrayName = ArrayLine.substr(0,q1-1);
|
||||
in >> ArrayName;
|
||||
MFEM_VERIFY(in.good(), "error parsing input!");
|
||||
}
|
||||
|
||||
// Ignore the remainder of the line which may contain explanatory comments
|
||||
data[ArrayName].Load(in, 0);
|
||||
// Read the array
|
||||
data[ArrayName].Load(in);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
+4
-4
@@ -726,16 +726,16 @@ std::string Device::GetUUID(const int device_id)
|
||||
MFEM_GPU_CHECK(cudaGetDeviceProperties(&prop, device_id));
|
||||
for (int i = 0; i < 16; ++i)
|
||||
{
|
||||
res << std::setfill('0') << std::setw(2) << std::hex
|
||||
<< static_cast<unsigned>(prop.uuid.bytes[i]);
|
||||
const unsigned b = static_cast<unsigned char>(prop.uuid.bytes[i]);
|
||||
res << std::setfill('0') << std::setw(2) << std::hex << b;
|
||||
}
|
||||
#elif defined(MFEM_USE_HIP)
|
||||
hipUUID uuid;
|
||||
MFEM_GPU_CHECK(hipDeviceGetUuid(&uuid, device_id));
|
||||
for (int i = 0; i < 16; ++i)
|
||||
{
|
||||
res << std::setfill('0') << std::setw(2) << std::hex
|
||||
<< static_cast<unsigned>(uuid.bytes[i]);
|
||||
const unsigned b = static_cast<unsigned char>(uuid.bytes[i]);
|
||||
res << std::setfill('0') << std::setw(2) << std::hex << b;
|
||||
}
|
||||
#endif
|
||||
return res.str();
|
||||
|
||||
@@ -1090,6 +1090,12 @@ inline void forall_2D_batch(int N, int X, int Y, int BZ, lambda &&body)
|
||||
ForallWrap<2>(true, N, body, X, Y, BZ);
|
||||
}
|
||||
|
||||
template<int MAX_THREADS_PER_BLOCK, typename lambda>
|
||||
inline void forall_2D_batch(int N, int X, int Y, int BZ, lambda &&body)
|
||||
{
|
||||
ForallWrap<2, MAX_THREADS_PER_BLOCK>(true, N, body, X, Y, BZ);
|
||||
}
|
||||
|
||||
template<typename lambda>
|
||||
inline void forall_3D(int N, int X, int Y, int Z, lambda &&body)
|
||||
{
|
||||
|
||||
@@ -113,6 +113,10 @@ void SetGlobalMPI_Comm(MPI_Comm comm);
|
||||
/// to suppress the warning.
|
||||
const char* GetEnv(const char* name);
|
||||
|
||||
/// Signed indices i -> -1 - i are used as a convention to encode orientation.
|
||||
inline MFEM_HOST_DEVICE int FlipIndexSign(int i) { return -1 - i; }
|
||||
inline MFEM_HOST_DEVICE int UnsignIndex(int i) { return i < 0 ? -1 - i : i; }
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif
|
||||
|
||||
@@ -759,7 +759,9 @@ private:
|
||||
{
|
||||
switch (mt)
|
||||
{
|
||||
case MT::HOST_DEBUG: return new MmuHostMemorySpace();
|
||||
case MT::HOST_DEBUG:
|
||||
if (GetEnv("MFEM_MMU_STD")) { return new StdHostMemorySpace(); }
|
||||
return new MmuHostMemorySpace();
|
||||
#ifdef MFEM_USE_UMPIRE
|
||||
case MT::HOST_UMPIRE:
|
||||
return new UmpireHostMemorySpace(
|
||||
@@ -788,7 +790,9 @@ private:
|
||||
case MT::DEVICE_UMPIRE: return new NoDeviceMemorySpace();
|
||||
case MT::DEVICE_UMPIRE_2: return new NoDeviceMemorySpace();
|
||||
#endif
|
||||
case MT::DEVICE_DEBUG: return new MmuDeviceMemorySpace();
|
||||
case MT::DEVICE_DEBUG:
|
||||
if (GetEnv("MFEM_MMU_STD")) { return new StdDeviceMemorySpace(); }
|
||||
return new MmuDeviceMemorySpace();
|
||||
case MT::DEVICE:
|
||||
{
|
||||
#if defined(MFEM_USE_CUDA)
|
||||
|
||||
@@ -50,6 +50,48 @@ inline void filter_dos(std::string &line)
|
||||
}
|
||||
}
|
||||
|
||||
/** @brief Read a string formatted using std::quoted. Return nonzero on error.
|
||||
|
||||
The stream @a in must begin with @a delim. After clearing @a result and
|
||||
extracting the opening @a delim, characters are extracted from @a in and
|
||||
processed as follows:
|
||||
- if the character is @a delim, return 0;
|
||||
- if the character is different from @a escape, it is appended to @a result;
|
||||
- if the character is @a escape, the next character from @a in is extracted
|
||||
and if it is one of @a delim or @a escape, it is appended to @a result;
|
||||
otherwise, both @a escape and the character after it are appended to
|
||||
@a result; note that the latter case is not possible if the input was
|
||||
formatted with std::quoted with the same @a delim and @a escape
|
||||
characters.
|
||||
|
||||
If the stream @a in does not begin with @a delim, error code 1 is returned.
|
||||
If reading the stream fails, error code 2 is returned. On success, zero is
|
||||
returned and the closing @a delim character is the last character extracted
|
||||
from @a in. */
|
||||
inline int parse_quoted_string(std::string &result, std::istream &in,
|
||||
char delim = '"', char escape = '\\')
|
||||
{
|
||||
using tt = std::string::traits_type; // std::char_traits<char>
|
||||
auto equal = [](tt::int_type c1, tt::char_type c2) -> bool
|
||||
{
|
||||
return tt::eq_int_type(c1, tt::to_int_type(c2));
|
||||
};
|
||||
result.clear();
|
||||
if (!equal(in.peek(), delim)) { return 1; }
|
||||
in.get(); // extract delim
|
||||
for (auto c = in.get(); !equal(c, delim); c = in.get())
|
||||
{
|
||||
if (equal(c, escape))
|
||||
{
|
||||
c = in.get();
|
||||
if (!equal(c, escape) && !equal(c, delim)) { result += escape; }
|
||||
}
|
||||
if (!in) { return 2; }
|
||||
result += tt::to_char_type(c);
|
||||
}
|
||||
return 0;
|
||||
}
|
||||
|
||||
/// Convert an integer to a 0-padded string with the given number of @a digits
|
||||
inline std::string to_padded_string(int i, int digits)
|
||||
{
|
||||
|
||||
@@ -82,6 +82,15 @@ public:
|
||||
}
|
||||
}
|
||||
|
||||
/// Make the DenseMatrix to reference the given sub-Memory of @a base.
|
||||
/** The DenseMatrix does not assume ownership of the data array, i.e. it will
|
||||
not delete the @a base Memory. */
|
||||
void MakeRef(Memory<real_t> &base, int offset, int h, int w)
|
||||
{
|
||||
data.MakeRef(base, offset, h*w);
|
||||
height = h; width = w;
|
||||
}
|
||||
|
||||
/// Change the data array and the size of the DenseMatrix.
|
||||
/** The DenseMatrix does not assume ownership of the data array, i.e. it will
|
||||
not delete the data array @a d. */
|
||||
|
||||
@@ -317,6 +317,9 @@ void HypreParVector::WrapHypreParVector(hypre_ParVector *y, bool owner)
|
||||
|
||||
Vector * HypreParVector::GlobalVector() const
|
||||
{
|
||||
MFEM_VERIFY(size > 0,
|
||||
"GlobalVector method can only be called on vectors wherein each "
|
||||
"process owns one or more entries");
|
||||
hypre_Vector *hv = hypre_ParVectorToVectorAll(*this);
|
||||
Vector *v = new Vector(hv->data, internal::to_int(hv->size));
|
||||
v->MakeDataOwner();
|
||||
|
||||
+61
-84
@@ -38,6 +38,13 @@
|
||||
#if PETSC_VERSION_LT(3,19,0)
|
||||
#define PETSC_SUCCESS 0
|
||||
#endif
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
#define PetscContainerSetCtxDestroy(A,B) PetscContainerSetUserDestroy(A,B)
|
||||
typedef PetscErrorCode (PetscCtxDestroyFn)(void**);
|
||||
#endif
|
||||
#if PETSC_VERSION_LT(3,24,0)
|
||||
typedef PetscErrorCode KSPMonitorFn(KSP,PetscInt,PetscReal,void*);
|
||||
#endif
|
||||
|
||||
#include <fstream>
|
||||
#include <iomanip>
|
||||
@@ -77,13 +84,17 @@ static PetscErrorCode __mfem_mat_shell_apply_transpose(Mat,Vec,Vec);
|
||||
static PetscErrorCode __mfem_mat_shell_destroy(Mat);
|
||||
static PetscErrorCode __mfem_mat_shell_copy(Mat,Mat,MatStructure);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
static PetscErrorCode __mfem_array_container_destroy(void*);
|
||||
static PetscErrorCode __mfem_matarray_container_destroy(void *);
|
||||
#else
|
||||
static PetscErrorCode __mfem_array_container_destroy(void**);
|
||||
static PetscErrorCode __mfem_matarray_container_destroy(void**);
|
||||
typedef void *PetscCtxRt;
|
||||
#elif PETSC_VERSION_LT(3,25,0)
|
||||
typedef void **PetscCtxRt;
|
||||
#endif
|
||||
static PetscErrorCode __mfem_array_container_destroy(PetscCtxRt);
|
||||
static PetscErrorCode __mfem_matarray_container_destroy(PetscCtxRt);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
static PetscErrorCode __mfem_monitor_ctx_destroy(void**);
|
||||
#else
|
||||
static PetscErrorCode __mfem_monitor_ctx_destroy(PetscCtxRt);
|
||||
#endif
|
||||
|
||||
// auxiliary functions
|
||||
static PetscErrorCode Convert_Array_IS(MPI_Comm,bool,const mfem::Array<int>*,
|
||||
@@ -1317,11 +1328,7 @@ BlockDiagonalConstructor(MPI_Comm comm,
|
||||
|
||||
ierr = PetscContainerCreate(comm,&c); CCHKERRQ(comm,ierr);
|
||||
ierr = PetscContainerSetPointer(c,ptrs[i]); CCHKERRQ(comm,ierr);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
|
||||
#else
|
||||
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
|
||||
#endif
|
||||
CCHKERRQ(comm,ierr);
|
||||
ierr = PetscObjectCompose((PetscObject)A,names[i],(PetscObject)c);
|
||||
CCHKERRQ(comm,ierr);
|
||||
@@ -1648,11 +1655,7 @@ void PetscParMatrix::ConvertOperator(MPI_Comm comm, const Operator &op, Mat* A,
|
||||
PetscContainer c;
|
||||
ierr = PetscContainerCreate(comm,&c); CCHKERRQ(comm,ierr);
|
||||
ierr = PetscContainerSetPointer(c,vmatsl2l); PCHKERRQ(c,ierr);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
ierr = PetscContainerSetUserDestroy(c,__mfem_matarray_container_destroy);
|
||||
#else
|
||||
ierr = PetscContainerSetCtxDestroy(c,__mfem_matarray_container_destroy);
|
||||
#endif
|
||||
PCHKERRQ(c,ierr);
|
||||
ierr = PetscObjectCompose((PetscObject)(*A),"_MatIS_PtAP_l2l",(PetscObject)c);
|
||||
PCHKERRQ((*A),ierr);
|
||||
@@ -1748,11 +1751,7 @@ void PetscParMatrix::ConvertOperator(MPI_Comm comm, const Operator &op, Mat* A,
|
||||
|
||||
ierr = PetscContainerCreate(PETSC_COMM_SELF,&c); PCHKERRQ(B,ierr);
|
||||
ierr = PetscContainerSetPointer(c,ptrs[i]); PCHKERRQ(B,ierr);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
|
||||
#else
|
||||
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
|
||||
#endif
|
||||
PCHKERRQ(B,ierr);
|
||||
ierr = PetscObjectCompose((PetscObject)(B),names[i],(PetscObject)c);
|
||||
PCHKERRQ(B,ierr);
|
||||
@@ -2198,11 +2197,7 @@ PetscParMatrix * RAP(PetscParMatrix *Rt, PetscParMatrix *A, PetscParMatrix *P)
|
||||
ierr = PetscContainerCreate(PetscObjectComm((PetscObject)B),&c);
|
||||
PCHKERRQ(B,ierr);
|
||||
ierr = PetscContainerSetPointer(c,vmatsl2l); PCHKERRQ(c,ierr);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
ierr = PetscContainerSetUserDestroy(c,__mfem_matarray_container_destroy);
|
||||
#else
|
||||
ierr = PetscContainerSetCtxDestroy(c,__mfem_matarray_container_destroy);
|
||||
#endif
|
||||
PCHKERRQ(c,ierr);
|
||||
ierr = PetscObjectCompose((PetscObject)B,"_MatIS_PtAP_l2l",(PetscObject)c);
|
||||
PCHKERRQ(B,ierr);
|
||||
@@ -2485,7 +2480,6 @@ void PetscSolver::SetMaxIter(int max_iter)
|
||||
|
||||
void PetscSolver::SetPrintLevel(int plev)
|
||||
{
|
||||
typedef PetscErrorCode (*myPetscFunc)(void**);
|
||||
PetscViewerAndFormat *vf = NULL;
|
||||
PetscViewer viewer = PETSC_VIEWER_STDOUT_(PetscObjectComm(obj));
|
||||
|
||||
@@ -2498,7 +2492,6 @@ void PetscSolver::SetPrintLevel(int plev)
|
||||
{
|
||||
// there are many other options, see the function KSPSetFromOptions() in
|
||||
// src/ksp/ksp/interface/itcl.c
|
||||
typedef PetscErrorCode (*myMonitor)(KSP,PetscInt,PetscReal,void*);
|
||||
KSP ksp = (KSP)obj;
|
||||
if (plev >= 0)
|
||||
{
|
||||
@@ -2507,29 +2500,29 @@ void PetscSolver::SetPrintLevel(int plev)
|
||||
if (plev == 1)
|
||||
{
|
||||
#if PETSC_VERSION_LT(3,15,0)
|
||||
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorDefault,vf,
|
||||
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorDefault,vf,
|
||||
#else
|
||||
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorResidual,vf,
|
||||
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorResidual,vf,
|
||||
#endif
|
||||
(myPetscFunc)PetscViewerAndFormatDestroy);
|
||||
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
|
||||
PCHKERRQ(ksp,ierr);
|
||||
}
|
||||
else if (plev > 1)
|
||||
{
|
||||
ierr = KSPSetComputeSingularValues(ksp,PETSC_TRUE); PCHKERRQ(ksp,ierr);
|
||||
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorSingularValue,vf,
|
||||
(myPetscFunc)PetscViewerAndFormatDestroy);
|
||||
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorSingularValue,vf,
|
||||
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
|
||||
PCHKERRQ(ksp,ierr);
|
||||
if (plev > 2)
|
||||
{
|
||||
ierr = PetscViewerAndFormatCreate(viewer,PETSC_VIEWER_DEFAULT,&vf);
|
||||
PCHKERRQ(viewer,ierr);
|
||||
#if PETSC_VERSION_LT(3,15,0)
|
||||
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorTrueResidualNorm,vf,
|
||||
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorTrueResidualNorm,vf,
|
||||
#else
|
||||
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorTrueResidual,vf,
|
||||
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorTrueResidual,vf,
|
||||
#endif
|
||||
(myPetscFunc)PetscViewerAndFormatDestroy);
|
||||
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
|
||||
PCHKERRQ(ksp,ierr);
|
||||
}
|
||||
}
|
||||
@@ -2545,7 +2538,7 @@ void PetscSolver::SetPrintLevel(int plev)
|
||||
if (plev > 0)
|
||||
{
|
||||
ierr = SNESMonitorSet(snes,(myMonitor)SNESMonitorDefault,vf,
|
||||
(myPetscFunc)PetscViewerAndFormatDestroy);
|
||||
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
|
||||
PCHKERRQ(snes,ierr);
|
||||
}
|
||||
}
|
||||
@@ -4163,20 +4156,31 @@ void PetscNonlinearSolver::SetUpdate(void (*update)(Operator *,int,
|
||||
void PetscNonlinearSolver::Mult(const Vector &b, Vector &x) const
|
||||
{
|
||||
SNES snes = (SNES)obj;
|
||||
MPI_Comm comm = PetscObjectComm(obj);
|
||||
|
||||
bool b_nonempty = b.Size();
|
||||
if (!B) { B = new PetscParVector(PetscObjectComm(obj), *this, true); }
|
||||
if (!X) { X = new PetscParVector(PetscObjectComm(obj), *this, false, false); }
|
||||
// Reduction needed: some processes may have null local size while others don't,
|
||||
// and VecPlaceArray (used by PlaceMemory) is a logically collective operation.
|
||||
PetscBool b_nonempty = b.Size() ? PETSC_TRUE : PETSC_FALSE;
|
||||
#if PETSC_VERSION_LT(3,24,0)
|
||||
mpiierr = MPI_Allreduce(MPI_IN_PLACE,&b_nonempty,1,MPIU_BOOL,MPI_LOR,comm);
|
||||
#else
|
||||
mpiierr = MPI_Allreduce(MPI_IN_PLACE,&b_nonempty,1,MPI_C_BOOL,MPI_LOR,comm);
|
||||
#endif
|
||||
CCHKERRQ(comm,mpiierr);
|
||||
|
||||
// Always create B with allocate=false so that PlaceMemory can be called on
|
||||
// it regardless of whether b was empty on a previous call.
|
||||
if (!B) { B = new PetscParVector(comm, *this, true, false); }
|
||||
if (!X) { X = new PetscParVector(comm, *this, false, false); }
|
||||
X->PlaceMemory(x.GetMemory(),iterative_mode);
|
||||
if (b_nonempty) { B->PlaceMemory(b.GetMemory()); }
|
||||
else { *B = 0.0; }
|
||||
|
||||
Customize();
|
||||
|
||||
if (!iterative_mode) { *X = 0.; }
|
||||
|
||||
// Solve the system.
|
||||
ierr = SNESSolve(snes, B->x, X->x); PCHKERRQ(snes, ierr);
|
||||
// Solve the system. Pass nullptr for b when empty (PETSc treats it as zero RHS).
|
||||
ierr = SNESSolve(snes, b_nonempty ? B->x : nullptr, X->x); PCHKERRQ(snes, ierr);
|
||||
X->ResetMemory();
|
||||
if (b_nonempty) { B->ResetMemory(); }
|
||||
}
|
||||
@@ -5329,21 +5333,27 @@ static PetscErrorCode __mfem_pc_shell_destroy(PC pc)
|
||||
PetscFunctionReturn(PETSC_SUCCESS);
|
||||
}
|
||||
|
||||
static PetscErrorCode __mfem_array_container_destroy(PetscCtxRt ptr)
|
||||
{
|
||||
PetscErrorCode ierr;
|
||||
|
||||
PetscFunctionBeginUser;
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
|
||||
static PetscErrorCode __mfem_array_container_destroy(void *ptr)
|
||||
{
|
||||
PetscErrorCode ierr;
|
||||
|
||||
PetscFunctionBeginUser;
|
||||
ierr = PetscFree(ptr); CHKERRQ(ierr);
|
||||
#else
|
||||
ierr = PetscFree(*(void**)ptr); CHKERRQ(ierr);
|
||||
#endif
|
||||
PetscFunctionReturn(PETSC_SUCCESS);
|
||||
}
|
||||
|
||||
static PetscErrorCode __mfem_matarray_container_destroy(void *ptr)
|
||||
static PetscErrorCode __mfem_matarray_container_destroy(PetscCtxRt ptr)
|
||||
{
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
mfem::Array<Mat> *a = (mfem::Array<Mat>*)ptr;
|
||||
PetscErrorCode ierr;
|
||||
#else
|
||||
mfem::Array<Mat> *a = *(mfem::Array<Mat>**)ptr;
|
||||
#endif
|
||||
PetscErrorCode ierr;
|
||||
|
||||
PetscFunctionBeginUser;
|
||||
for (int i=0; i<a->Size(); i++)
|
||||
@@ -5356,41 +5366,16 @@ static PetscErrorCode __mfem_matarray_container_destroy(void *ptr)
|
||||
PetscFunctionReturn(PETSC_SUCCESS);
|
||||
}
|
||||
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
static PetscErrorCode __mfem_monitor_ctx_destroy(void **ctx)
|
||||
#else
|
||||
|
||||
static PetscErrorCode __mfem_array_container_destroy(void **ptr)
|
||||
static PetscErrorCode __mfem_monitor_ctx_destroy(PetscCtxRt ctx)
|
||||
#endif
|
||||
{
|
||||
PetscErrorCode ierr;
|
||||
|
||||
PetscFunctionBeginUser;
|
||||
ierr = PetscFree(*ptr); CHKERRQ(ierr);
|
||||
PetscFunctionReturn(PETSC_SUCCESS);
|
||||
}
|
||||
|
||||
static PetscErrorCode __mfem_matarray_container_destroy(void **ptr)
|
||||
{
|
||||
mfem::Array<Mat> *a = (mfem::Array<Mat>*)*ptr;
|
||||
PetscErrorCode ierr;
|
||||
|
||||
PetscFunctionBeginUser;
|
||||
for (int i=0; i<a->Size(); i++)
|
||||
{
|
||||
Mat M = (*a)[i];
|
||||
MPI_Comm comm = PetscObjectComm((PetscObject)M);
|
||||
ierr = MatDestroy(&M); CCHKERRQ(comm,ierr);
|
||||
}
|
||||
delete a;
|
||||
PetscFunctionReturn(PETSC_SUCCESS);
|
||||
}
|
||||
|
||||
#endif
|
||||
|
||||
static PetscErrorCode __mfem_monitor_ctx_destroy(void **ctx)
|
||||
{
|
||||
PetscErrorCode ierr;
|
||||
|
||||
PetscFunctionBeginUser;
|
||||
ierr = PetscFree(*ctx); CHKERRQ(ierr);
|
||||
ierr = PetscFree(*(void**)ctx); CHKERRQ(ierr);
|
||||
PetscFunctionReturn(PETSC_SUCCESS);
|
||||
}
|
||||
|
||||
@@ -5635,11 +5620,7 @@ static PetscErrorCode MatConvert_hypreParCSR_AIJ(hypre_ParCSRMatrix* hA,Mat* pA)
|
||||
|
||||
ierr = PetscContainerCreate(comm,&c); CHKERRQ(ierr);
|
||||
ierr = PetscContainerSetPointer(c,ptrs[i]); CHKERRQ(ierr);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
|
||||
#else
|
||||
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
|
||||
#endif
|
||||
CHKERRQ(ierr);
|
||||
ierr = PetscObjectCompose((PetscObject)(*pA),names[i],(PetscObject)c);
|
||||
CHKERRQ(ierr);
|
||||
@@ -5733,11 +5714,7 @@ static PetscErrorCode MatConvert_hypreParCSR_IS(hypre_ParCSRMatrix* hA,Mat* pA)
|
||||
|
||||
ierr = PetscContainerCreate(PETSC_COMM_SELF,&c); CHKERRQ(ierr);
|
||||
ierr = PetscContainerSetPointer(c,ptrs[i]); CHKERRQ(ierr);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
|
||||
#else
|
||||
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
|
||||
#endif
|
||||
CHKERRQ(ierr);
|
||||
ierr = PetscObjectCompose((PetscObject)lA,names[i],(PetscObject)c);
|
||||
CHKERRQ(ierr);
|
||||
|
||||
@@ -123,15 +123,20 @@ EXAMPLE_SUBDIRS = amgx caliper ginkgo hiop petsc pumi sundials superlu moonolith
|
||||
EXAMPLE_DIRS := examples $(addprefix examples/,$(EXAMPLE_SUBDIRS))
|
||||
EXAMPLE_TEST_DIRS := examples
|
||||
|
||||
MINIAPP_SUBDIRS = common electromagnetics meshing performance tools \
|
||||
MINIAPP_ALL_SUBDIRS = common electromagnetics meshing performance tools \
|
||||
toys nurbs gslib adjoint solvers shifted mtop parelag tribol autodiff dfem \
|
||||
hooke multidomain dpg hdiv-linear-solver spde diag-smoothers contact \
|
||||
fluids/navier fluids/schrodinger-flow
|
||||
fluids/navier fluids/schrodinger-flow plasma plasma/pic
|
||||
MINIAPP_RECURSIVE_SUBDIRS = plasma/pic
|
||||
MINIAPP_SUBDIRS := $(filter-out \
|
||||
$(MINIAPP_RECURSIVE_SUBDIRS),$(MINIAPP_ALL_SUBDIRS))
|
||||
MINIAPP_ALL_DIRS := $(addprefix miniapps/,$(MINIAPP_ALL_SUBDIRS))
|
||||
MINIAPP_DIRS := $(addprefix miniapps/,$(MINIAPP_SUBDIRS))
|
||||
MINIAPP_TEST_DIRS := $(filter-out %/common,$(MINIAPP_DIRS))
|
||||
MINIAPP_USE_COMMON := $(addprefix miniapps/,electromagnetics meshing tools \
|
||||
toys shifted dpg diag-smoothers fluids/navier)
|
||||
toys gslib shifted dpg diag-smoothers fluids/navier plasma plasma/pic)
|
||||
|
||||
EM_ALL_DIRS = $(EXAMPLE_DIRS) $(MINIAPP_ALL_DIRS)
|
||||
EM_DIRS = $(EXAMPLE_DIRS) $(MINIAPP_DIRS)
|
||||
|
||||
TEST_SUBDIRS = unit
|
||||
@@ -146,7 +151,7 @@ MFEM_BUILD_DIR ?= .
|
||||
BUILD_DIR := $(MFEM_BUILD_DIR)
|
||||
BUILD_REAL_DIR := $(abspath $(BUILD_DIR))
|
||||
ifneq ($(BUILD_REAL_DIR),$(MFEM_REAL_DIR))
|
||||
BUILD_SUBDIRS = $(DIRS) config $(EM_DIRS) doc $(TEST_DIRS)
|
||||
BUILD_SUBDIRS = $(DIRS) config $(EM_ALL_DIRS) doc $(TEST_DIRS)
|
||||
CONFIG_FILE_DEF = -DMFEM_CONFIG_FILE='"$(BUILD_REAL_DIR)/config/_config.hpp"'
|
||||
BLD := $(if $(BUILD_REAL_DIR:$(CURDIR)=),$(BUILD_DIR)/,)
|
||||
$(if $(word 2,$(BLD)),$(error Spaces in BLD = "$(BLD)" are not supported))
|
||||
@@ -483,10 +488,10 @@ $(OBJECT_FILES): $(BLD)%.o: $(SRC)%.cpp $(CONFIG_MK)
|
||||
|
||||
all: examples miniapps $(TEST_DIRS)
|
||||
|
||||
.PHONY: miniapps $(EM_DIRS) $(TEST_DIRS)
|
||||
.PHONY: miniapps $(EM_ALL_DIRS) $(TEST_DIRS)
|
||||
miniapps: $(MINIAPP_DIRS)
|
||||
$(MINIAPP_USE_COMMON): miniapps/common
|
||||
$(EM_DIRS) $(TEST_DIRS): lib
|
||||
$(EM_ALL_DIRS) $(TEST_DIRS): lib
|
||||
$(MAKE) -C $(BLD)$(@)
|
||||
|
||||
.PHONY: doc
|
||||
@@ -694,7 +699,7 @@ local-config:
|
||||
.PHONY: build-config
|
||||
build-config:
|
||||
for d in $(BUILD_SUBDIRS); do mkdir -p $(BLD)$${d}; done
|
||||
for dir in "" $(addsuffix /,config $(EM_DIRS) doc $(TEST_DIRS)); do \
|
||||
for dir in "" $(addsuffix /,config $(EM_ALL_DIRS) doc $(TEST_DIRS)); do\
|
||||
printf "# Auto-generated file.\n%s\n%s\n" \
|
||||
"MFEM_DIR = $(MFEM_REAL_DIR)" \
|
||||
"include \$$(MFEM_DIR)/$${dir}makefile" \
|
||||
@@ -796,13 +801,15 @@ status info:
|
||||
|
||||
ASTYLE = $(ASTYLE_BIN) --options=$(SRC)config/mfem.astylerc
|
||||
ASTYLE_VER = "Artistic Style Version 3.1"
|
||||
FORMAT_FILES = $(foreach dir,$(DIRS) $(EM_DIRS) config,$(dir)/*.?pp)
|
||||
FORMAT_FILES = $(foreach dir,$(DIRS) $(EM_ALL_DIRS) config,$(dir)/*.?pp)
|
||||
TESTS_SUBDIRS = unit benchmarks convergence mem_manager par-mesh-format
|
||||
UNIT_TESTS_SUBDIRS = general linalg mesh fem miniapps ceed enzyme
|
||||
MINIAPPS_SUBDIRS = dpg/util hooke/operators hooke/preconditioners hooke/materials hooke/kernels
|
||||
UNIT_TESTS_SUBDIRS = general linalg mesh fem miniapps ceed enzyme dfem
|
||||
MINIAPPS_SUBDIRS = dpg/util hooke/operators hooke/preconditioners \
|
||||
hooke/materials hooke/kernels
|
||||
FORMAT_FILES += $(foreach dir,$(TESTS_SUBDIRS),tests/$(dir)/*.?pp)
|
||||
FORMAT_FILES += $(foreach dir,$(UNIT_TESTS_SUBDIRS),tests/unit/$(dir)/*.?pp)
|
||||
FORMAT_FILES += $(foreach dir,$(MINIAPPS_SUBDIRS),miniapps/$(dir)/*.?pp)
|
||||
FORMAT_FILES += config/cmake/config.hpp.in config/config.hpp.in mfem*.hpp
|
||||
FORMAT_EXCLUDE = general/tinyxml2.cpp tests/unit/catch.hpp
|
||||
FORMAT_LIST = $(filter-out $(FORMAT_EXCLUDE),$(wildcard $(FORMAT_FILES)))
|
||||
|
||||
@@ -833,14 +840,29 @@ mfem_check_command = \
|
||||
# Verify the C++ code styling in MFEM and check that std::cout and std::cerr are
|
||||
# not used in the library (use mfem::out and mfem::err instead).
|
||||
style:
|
||||
@echo "Applying C++ code style..."
|
||||
@astyle_version="$$($(ASTYLE_BIN) --version)";\
|
||||
if [ "$$astyle_version" != $(ASTYLE_VER) ]; then\
|
||||
printf "%s\n" "Invalid astyle version: '$$astyle_version'"\
|
||||
"Please use: '"$(ASTYLE_VER)"'";\
|
||||
exit 1;\
|
||||
fi
|
||||
@err_code=0;\
|
||||
@err_code=0; \
|
||||
if command -v git 2>&1 > /dev/null && [ -d $(MFEM_DIR)/.git ]; then \
|
||||
echo "Checking if all git files are selected for formatting ..."; \
|
||||
ls -1 $(FORMAT_FILES) | sort > format-files-make.txt; \
|
||||
git -C $(MFEM_DIR) ls-files '*.[ch]pp*' | sort \
|
||||
> format-files-git.txt; \
|
||||
cat format-files-make.txt format-files-git.txt | sort | uniq \
|
||||
> format-files-make-plus-git.txt; \
|
||||
rm -f format-files-git.txt; \
|
||||
$(call mfem_check_command,\
|
||||
diff format-files-make.txt format-files-make-plus-git.txt | \
|
||||
grep "^> ",\
|
||||
"All git files are selected for formatting",\
|
||||
"The above git files are NOT selected for formatting"); \
|
||||
rm -f format-files-make.txt format-files-make-plus-git.txt; \
|
||||
fi; \
|
||||
echo "Applying C++ code style...";\
|
||||
$(call mfem_check_command,\
|
||||
$(ASTYLE) $(FORMAT_LIST) | grep Formatted,\
|
||||
"No source files were changed",\
|
||||
|
||||
+61
-53
@@ -493,8 +493,7 @@ void Mesh::GetBdrElementTransformation(int i,
|
||||
{
|
||||
for (int j = 0; j < n; j++)
|
||||
{
|
||||
int idx = vdofs[n*k+j];
|
||||
pm(k,j) = nodes((idx<0)? -1-idx:idx);
|
||||
pm(k,j) = nodes(UnsignIndex(vdofs[n*k+j]));
|
||||
}
|
||||
}
|
||||
ElTr->SetFE(bdr_el);
|
||||
@@ -1356,7 +1355,7 @@ Mesh::FaceInformation Mesh::GetFaceInformation(int f) const
|
||||
face.element[0].conformity = ElementConformity::Coincident;
|
||||
face.element[1].conformity = ElementConformity::Coincident;
|
||||
face.element[1].location = ElementLocation::FaceNbr;
|
||||
face.element[1].index = -1 - e2;
|
||||
face.element[1].index = FlipIndexSign(e2);
|
||||
face.element[1].orientation = inf2%64;
|
||||
}
|
||||
}
|
||||
@@ -1379,7 +1378,7 @@ Mesh::FaceInformation Mesh::GetFaceInformation(int f) const
|
||||
face.element[1].location = ElementLocation::FaceNbr;
|
||||
face.element[0].conformity = ElementConformity::Coincident;
|
||||
face.element[1].conformity = ElementConformity::Superset;
|
||||
face.element[1].index = -1 - e2;
|
||||
face.element[1].index = FlipIndexSign(e2);
|
||||
face.element[1].orientation = inf2%64;
|
||||
}
|
||||
face.point_matrix = nc_faces_info[ncface].PointMatrix;
|
||||
@@ -1405,7 +1404,7 @@ Mesh::FaceInformation Mesh::GetFaceInformation(int f) const
|
||||
face.element[1].location = ElementLocation::FaceNbr;
|
||||
face.element[0].conformity = ElementConformity::Superset;
|
||||
face.element[1].conformity = ElementConformity::Coincident;
|
||||
face.element[1].index = -1 - e2;
|
||||
face.element[1].index = FlipIndexSign(e2);
|
||||
face.element[1].orientation = inf2%64;
|
||||
face.point_matrix = nc_faces_info[ncface].PointMatrix;
|
||||
}
|
||||
@@ -1438,7 +1437,7 @@ Mesh::FaceInformation::operator Mesh::FaceInfo() const
|
||||
break;
|
||||
case FaceInfoTag::SharedConforming:
|
||||
res.Elem1No = element[0].index;
|
||||
res.Elem2No = -1 - element[1].index;
|
||||
res.Elem2No = FlipIndexSign(element[1].index);
|
||||
res.Elem1Inf = element[0].orientation + element[0].local_face_id*64;
|
||||
res.Elem2Inf = element[1].orientation + element[1].local_face_id*64;
|
||||
break;
|
||||
@@ -1448,7 +1447,7 @@ Mesh::FaceInformation::operator Mesh::FaceInfo() const
|
||||
break;
|
||||
case FaceInfoTag::SharedSlaveNonconforming:
|
||||
res.Elem1No = element[0].index;
|
||||
res.Elem2No = -1 - element[1].index;
|
||||
res.Elem2No = FlipIndexSign(element[1].index);
|
||||
res.Elem1Inf = element[0].orientation + element[0].local_face_id*64;
|
||||
res.Elem2Inf = element[1].orientation + element[1].local_face_id*64;
|
||||
break;
|
||||
@@ -1456,7 +1455,7 @@ Mesh::FaceInformation::operator Mesh::FaceInfo() const
|
||||
break;
|
||||
case FaceInfoTag::GhostSlave:
|
||||
res.Elem1No = element[0].index;
|
||||
res.Elem2No = -1 - element[1].index;
|
||||
res.Elem2No = FlipIndexSign(element[1].index);
|
||||
res.Elem1Inf = element[0].orientation + element[0].local_face_id*64;
|
||||
res.Elem2Inf = element[1].orientation + element[1].local_face_id*64;
|
||||
break;
|
||||
@@ -1617,7 +1616,9 @@ Element::Type Mesh::GetFaceElementType(int Face) const
|
||||
|
||||
Array<int> Mesh::GetFaceToBdrElMap() const
|
||||
{
|
||||
Array<int> face_to_be(Dim == 2 ? NumOfEdges : NumOfFaces);
|
||||
Array<int> face_to_be(Dim == 1 ? NumOfVertices :
|
||||
Dim == 2 ? NumOfEdges :
|
||||
Dim == 3 ? NumOfFaces : 0);
|
||||
face_to_be = -1;
|
||||
for (int i = 0; i < NumOfBdrElements; i++)
|
||||
{
|
||||
@@ -6514,7 +6515,7 @@ void Mesh::LoadPatchTopo(std::istream &input, Array<int> &edge_to_ukv)
|
||||
input >> edge_to_ukv[j] >> v[0] >> v[1];
|
||||
if (v[0] > v[1])
|
||||
{
|
||||
edge_to_ukv[j] = -1 - edge_to_ukv[j];
|
||||
edge_to_ukv[j] = FlipIndexSign(edge_to_ukv[j]);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -6551,9 +6552,6 @@ void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
|
||||
const int NP = NumOfElements; // number of patches
|
||||
const int NPKV = NP * dim; // number of patch knotvectors
|
||||
constexpr int notset = -9999999;
|
||||
// Sign convention
|
||||
auto flipSign = [](int i) { return -1 - i; };
|
||||
auto unSign = [](int i) { return (i < 0) ? -1 - i : i; };
|
||||
// Local edge index -> dimension convention
|
||||
auto edge_to_dim = [](int i) { return (i < 8) ? ((i & 1) ? 1 : 0) : 2; };
|
||||
|
||||
@@ -6569,7 +6567,7 @@ void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
|
||||
{
|
||||
GetElementVertices(i, v);
|
||||
// Sign is based on the edge's vertex indices
|
||||
edge_to_ukv[i] = (v[1] > v[0]) ? i : flipSign(i);
|
||||
edge_to_ukv[i] = (v[1] > v[0]) ? i : FlipIndexSign(i);
|
||||
ukv_to_rpkv[i] = i;
|
||||
}
|
||||
return;
|
||||
@@ -6619,14 +6617,14 @@ void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
|
||||
// We've set this edge already - link this index to it
|
||||
if (edge_to_pkv[edge] != notset)
|
||||
{
|
||||
const int pkv_other = unSign(edge_to_pkv[edge]);
|
||||
const int pkv_other = UnsignIndex(edge_to_pkv[edge]);
|
||||
unite(pkv, pkv_other);
|
||||
}
|
||||
else
|
||||
{
|
||||
GetEdgeVertices(edge, v);
|
||||
// Sign is based on the edge's vertex indices
|
||||
edge_to_pkv[edge] = (v[1] > v[0]) ? pkv : flipSign(pkv);
|
||||
edge_to_pkv[edge] = (v[1] > v[0]) ? pkv : FlipIndexSign(pkv);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -6653,10 +6651,10 @@ void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
|
||||
edge_to_ukv.SetSize(NumOfEdges);
|
||||
for (int i = 0; i < NumOfEdges; i++)
|
||||
{
|
||||
const int pkv = unSign(edge_to_pkv[i]);
|
||||
const int pkv = UnsignIndex(edge_to_pkv[i]);
|
||||
const int rpkv = pkv_to_rpkv[pkv];
|
||||
const int ukv = rpkv_to_ukv[rpkv];
|
||||
edge_to_ukv[i] = (edge_to_pkv[i] < 0) ? flipSign(ukv) : ukv;
|
||||
edge_to_ukv[i] = (edge_to_pkv[i] < 0) ? FlipIndexSign(ukv) : ukv;
|
||||
}
|
||||
|
||||
CorrectPatchTopoOrientations(edge_to_ukv);
|
||||
@@ -6667,9 +6665,6 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
|
||||
const int dim = Dimension(); // Topological (not physical) dimension
|
||||
if (dim == 1) { return; }
|
||||
|
||||
// Sign convention
|
||||
auto flipSign = [](int i) { return -1 - i; };
|
||||
|
||||
const Table *face2elem = GetFaceToElementTable();
|
||||
Array<int> pfaces, orient;
|
||||
Array<int> fe, feo;
|
||||
@@ -6688,7 +6683,7 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
|
||||
for (auto e : fe)
|
||||
{
|
||||
const int skv = edge_to_ukv[e];
|
||||
if (skv == kv || flipSign(skv) == kv) { hasKV = true; }
|
||||
if (skv == kv || FlipIndexSign(skv) == kv) { hasKV = true; }
|
||||
}
|
||||
if (hasKV)
|
||||
{
|
||||
@@ -6718,7 +6713,7 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
|
||||
};
|
||||
}
|
||||
|
||||
Array<int> ukvs((dim==2) ? 4 : 12);
|
||||
Array<int> ukvs((dim == 2) ? 4 : 12);
|
||||
Array<int> pe, oe;
|
||||
bool initKV = false;
|
||||
|
||||
@@ -6732,7 +6727,7 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
|
||||
for (int i = 0; i < pe.Size(); i++)
|
||||
{
|
||||
ukvs[i] = edge_to_ukv[pe[i]];
|
||||
ukvs[i] = (oe[i] < 0) ? flipSign(ukvs[i]) : ukvs[i];
|
||||
ukvs[i] = (oe[i] < 0) ? FlipIndexSign(ukvs[i]) : ukvs[i];
|
||||
}
|
||||
|
||||
// Find the direction with this kv.
|
||||
@@ -6740,12 +6735,19 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
|
||||
for (int d=0; d<dim; ++d) // Loop over directions.
|
||||
{
|
||||
const int skv = edge_to_ukv[pe[dir_edges[d][0]]];
|
||||
if (skv == kv || flipSign(skv) == kv)
|
||||
if (skv == kv || FlipIndexSign(skv) == kv)
|
||||
{
|
||||
thisDir = d;
|
||||
for (auto e : dir_edges[d])
|
||||
if (!edgeSet[pe[e]])
|
||||
{
|
||||
thisDir = d;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_VERIFY(thisDir >= 0, "");
|
||||
if (thisDir == -1)
|
||||
{
|
||||
return false;
|
||||
}
|
||||
|
||||
// For this direction, find any edge already set. If no edge is set, we
|
||||
// arbitrarily take the first.
|
||||
@@ -6777,12 +6779,12 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
|
||||
}
|
||||
|
||||
const int edge = pe[i];
|
||||
if ((dim == 2 && ukvs[i] != flipSign(ukvs[ref_edge0])) ||
|
||||
(dim == 3 && ukvs[i] == flipSign(ukvs[ref_edge0])))
|
||||
if ((dim == 2 && ukvs[i] != FlipIndexSign(ukvs[ref_edge0])) ||
|
||||
(dim == 3 && ukvs[i] == FlipIndexSign(ukvs[ref_edge0])))
|
||||
{
|
||||
// Flip the sign of this edge
|
||||
MFEM_VERIFY(!edgeSet[edge], "");
|
||||
edge_to_ukv[edge] = flipSign(edge_to_ukv[edge]);
|
||||
MFEM_ASSERT(!edgeSet[edge], "");
|
||||
edge_to_ukv[edge] = FlipIndexSign(edge_to_ukv[edge]);
|
||||
}
|
||||
|
||||
edgeSet[edge] = true;
|
||||
@@ -6827,10 +6829,11 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
|
||||
int unsetDim = -1;
|
||||
for (int d=0; d<dim; ++d) // Loop over dimensions.
|
||||
{
|
||||
if (!edgeSet[pe[dir_edges[d][0]]])
|
||||
{
|
||||
unsetDim = d;
|
||||
}
|
||||
for (auto e : dir_edges[d])
|
||||
if (!edgeSet[pe[e]])
|
||||
{
|
||||
unsetDim = d;
|
||||
}
|
||||
}
|
||||
|
||||
if (unsetDim == -1)
|
||||
@@ -6839,9 +6842,7 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
|
||||
continue;
|
||||
}
|
||||
|
||||
const int kv_signed = edge_to_ukv[pe[dir_edges[unsetDim][0]]];
|
||||
const int kv = kv_signed < 0 ? flipSign(kv_signed) : kv_signed;
|
||||
MFEM_VERIFY(!edgeSet[pe[dir_edges[unsetDim][0]]], "");
|
||||
const int kv = UnsignIndex(edge_to_ukv[pe[dir_edges[unsetDim][0]]]);
|
||||
|
||||
initKV = false;
|
||||
|
||||
@@ -6891,6 +6892,7 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
|
||||
}
|
||||
}
|
||||
|
||||
#ifdef MFEM_DEBUG
|
||||
bool allSet = true;
|
||||
for (auto eset : edgeSet)
|
||||
{
|
||||
@@ -6899,7 +6901,8 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
|
||||
allSet = false;
|
||||
}
|
||||
}
|
||||
MFEM_VERIFY(allSet && unset.size() == 0, "Some edge is not set");
|
||||
MFEM_ASSERT(allSet && unset.size() == 0, "Some edge is not set");
|
||||
#endif
|
||||
|
||||
delete face2elem;
|
||||
}
|
||||
@@ -6941,7 +6944,7 @@ void Mesh::LoadNonconformingPatchTopo(std::istream &input,
|
||||
|
||||
if (v[0] > v[1])
|
||||
{
|
||||
ukv = -1 - ukv;
|
||||
ukv = FlipIndexSign(ukv);
|
||||
}
|
||||
edge_to_ukv[j] = ukv;
|
||||
}
|
||||
@@ -12438,11 +12441,7 @@ void Mesh::PrintTopoEdges(std::ostream &os, const Array<int> &e_to_k,
|
||||
for (int i = 0; i < NumOfEdges; i++)
|
||||
{
|
||||
edge_vertex->GetRow(i, vert);
|
||||
int ki = e_to_k[i];
|
||||
if (ki < 0)
|
||||
{
|
||||
ki = -1 - ki;
|
||||
}
|
||||
const int ki = UnsignIndex(e_to_k[i]);
|
||||
|
||||
if (vmap)
|
||||
{
|
||||
@@ -15751,9 +15750,18 @@ Mesh PartitionMPI(int dim, int mpi_cnt, int elem_per_mpi, bool print,
|
||||
{
|
||||
MFEM_VERIFY(dim > 1, "Not implemented for 1D meshes.");
|
||||
|
||||
auto factor = [&](int N)
|
||||
// Closest int divisor to the cubit root, going down.
|
||||
auto factor3 = [](int N)
|
||||
{
|
||||
for (int i = static_cast<int>(sqrt(N)); i > 0; i--)
|
||||
for (int i = static_cast<int>(round(cbrt(N))); i > 0; i--)
|
||||
{ if (N % i == 0) { return i; } }
|
||||
return 1;
|
||||
};
|
||||
|
||||
// Closest int divisor to the square root, going down.
|
||||
auto factor2 = [](int N)
|
||||
{
|
||||
for (int i = static_cast<int>(round(sqrt(N))); i > 0; i--)
|
||||
{ if (N % i == 0) { return i; } }
|
||||
return 1;
|
||||
};
|
||||
@@ -15777,22 +15785,22 @@ Mesh PartitionMPI(int dim, int mpi_cnt, int elem_per_mpi, bool print,
|
||||
int el0_x, el0_y, el0_z;
|
||||
if (dim == 2)
|
||||
{
|
||||
mpi_x = factor(mpi_cnt);
|
||||
mpi_x = factor2(mpi_cnt);
|
||||
mpi_y = mpi_cnt / mpi_x;
|
||||
|
||||
// Switch order for better balance.
|
||||
el0_y = factor(el0);
|
||||
el0_y = factor2(el0);
|
||||
el0_x = el0 / el0_y;
|
||||
}
|
||||
else
|
||||
{
|
||||
mpi_x = factor(mpi_cnt);
|
||||
mpi_y = factor(mpi_cnt / mpi_x);
|
||||
mpi_x = factor3(mpi_cnt);
|
||||
mpi_y = factor2(mpi_cnt / mpi_x);
|
||||
mpi_z = mpi_cnt / mpi_x / mpi_y;
|
||||
|
||||
// Switch order for better balance.
|
||||
el0_z = factor(el0);
|
||||
el0_y = factor(el0 / el0_z);
|
||||
el0_z = factor3(el0);
|
||||
el0_y = factor2(el0 / el0_z);
|
||||
el0_x = el0 / el0_y / el0_z;
|
||||
}
|
||||
|
||||
|
||||
@@ -3206,10 +3206,22 @@ public:
|
||||
|
||||
|
||||
/// Extrude a 1D mesh
|
||||
/**
|
||||
* @param mesh 1D mesh
|
||||
* @param ny number of transverse elements of the extruded mesh
|
||||
* @param sy physical size in the direction of extrusion
|
||||
* @param closed if false, only the original boundaries are extruded,
|
||||
* otherwise boundaries are generated all around the domain
|
||||
*/
|
||||
Mesh *Extrude1D(Mesh *mesh, const int ny, const real_t sy,
|
||||
const bool closed = false);
|
||||
|
||||
/// Extrude a 2D mesh
|
||||
/**
|
||||
* @param mesh 2D mesh
|
||||
* @param nz number of transverse elements of the extruded mesh
|
||||
* @param sz physical size in the direction of extrusion
|
||||
*/
|
||||
Mesh *Extrude2D(Mesh *mesh, const int nz, const real_t sz);
|
||||
|
||||
/** @brief Constructs the smallest possible [0,1]^dim serial mesh that can be
|
||||
|
||||
@@ -63,7 +63,6 @@ ThresholdRefiner::ThresholdRefiner(ErrorEstimator &est)
|
||||
|
||||
threshold = 0.0;
|
||||
num_marked_elements = 0LL;
|
||||
current_sequence = -1;
|
||||
|
||||
non_conforming = -1;
|
||||
nc_limit = 0;
|
||||
@@ -87,7 +86,6 @@ int ThresholdRefiner::MarkWithoutRefining(Mesh & mesh,
|
||||
threshold = 0.0;
|
||||
num_marked_elements = 0LL;
|
||||
refinements.SetSize(0);
|
||||
current_sequence = mesh.GetSequence();
|
||||
|
||||
const long long num_elements = mesh.GetGlobalNE();
|
||||
if (num_elements >= max_elements) { return STOP; }
|
||||
@@ -143,13 +141,12 @@ int ThresholdRefiner::ApplyImpl(Mesh &mesh)
|
||||
if (num_marked_elements == 0LL) { return STOP; }
|
||||
|
||||
mesh.GeneralRefinement(marked_elements, non_conforming, nc_limit);
|
||||
return CONTINUE + REFINED;
|
||||
return static_cast<int>(CONTINUE) + static_cast<int>(REFINED);
|
||||
}
|
||||
|
||||
void ThresholdRefiner::Reset()
|
||||
{
|
||||
estimator.Reset();
|
||||
current_sequence = -1;
|
||||
num_marked_elements = 0LL;
|
||||
// marked_elements.SetSize(0); // not necessary
|
||||
}
|
||||
@@ -162,7 +159,7 @@ int ThresholdDerefiner::ApplyImpl(Mesh &mesh)
|
||||
const Vector &local_err = estimator.GetLocalErrors();
|
||||
bool derefs = mesh.DerefineByError(local_err, threshold, nc_limit, op);
|
||||
|
||||
return derefs ? CONTINUE + DEREFINED : NONE;
|
||||
return derefs ? static_cast<int>(CONTINUE) + static_cast<int>(DEREFINED) : NONE;
|
||||
}
|
||||
|
||||
|
||||
@@ -290,7 +287,7 @@ int CoefficientRefiner::PreprocessMesh(Mesh &mesh, int max_it)
|
||||
}
|
||||
delete l2fes;
|
||||
delete gf;
|
||||
return CONTINUE + REFINED;
|
||||
return static_cast<int>(CONTINUE) + static_cast<int>(REFINED);
|
||||
|
||||
}
|
||||
|
||||
@@ -310,7 +307,7 @@ int Rebalancer::ApplyImpl(Mesh &mesh)
|
||||
if (pmesh && pmesh->Nonconforming())
|
||||
{
|
||||
pmesh->Rebalance();
|
||||
return CONTINUE + REBALANCED;
|
||||
return static_cast<int>(CONTINUE) + static_cast<int>(REBALANCED);
|
||||
}
|
||||
#endif
|
||||
return NONE;
|
||||
|
||||
@@ -188,7 +188,6 @@ protected:
|
||||
long long num_marked_elements;
|
||||
|
||||
Array<Refinement> marked_elements;
|
||||
long current_sequence;
|
||||
|
||||
int non_conforming;
|
||||
int nc_limit;
|
||||
|
||||
@@ -1516,12 +1516,15 @@ void Mesh::ReadInlineMesh(std::istream &input, bool generate_edges)
|
||||
void Mesh::ReadGmshMesh(std::istream &input, int &curved, int &read_gf)
|
||||
{
|
||||
string buff;
|
||||
real_t version;
|
||||
string version;
|
||||
int binary, dsize;
|
||||
input >> version >> binary >> dsize;
|
||||
if (version < 2.2)
|
||||
if (version != "2.2")
|
||||
{
|
||||
MFEM_ABORT("Gmsh file version < 2.2");
|
||||
MFEM_ABORT("Gmsh file version must be 2.2, found version "
|
||||
<< version << ".\n"
|
||||
"To convert your mesh to the required format, use:\n"
|
||||
" gmsh -format msh22 -save -o output.msh input.msh");
|
||||
}
|
||||
if (dsize != sizeof(double))
|
||||
{
|
||||
|
||||
+2
-2
@@ -3542,7 +3542,7 @@ void NCMesh::TraverseQuadFace(int vn0, int vn1, int vn2, int vn3,
|
||||
|
||||
// create a slave face record with a degenerate point matrix
|
||||
face_list.slaves.Append(
|
||||
Slave(-1 - enode.edge_index,
|
||||
Slave(FlipIndexSign(enode.edge_index),
|
||||
eid[0].element, eid[0].local, Geometry::SQUARE));
|
||||
Slave &sl = face_list.slaves.Last();
|
||||
|
||||
@@ -3589,7 +3589,7 @@ void NCMesh::TraverseTetEdge(int vn0, int vn1, const Point &p0, const Point &p1,
|
||||
// non-slave edge is really a (face-)slave itself.
|
||||
const MeshId &eid = *eid_and_type.id;
|
||||
face_list.slaves.Append(
|
||||
Slave(-1 - eid.index, eid.element, eid.local, Geometry::TRIANGLE));
|
||||
Slave(FlipIndexSign(eid.index), eid.element, eid.local, Geometry::TRIANGLE));
|
||||
|
||||
int v0index = nodes[vn0].vert_index;
|
||||
int v1index = nodes[vn1].vert_index;
|
||||
|
||||
+40
-44
@@ -93,7 +93,7 @@ void NCNURBSExtension::GetMasterEdgeEntities(
|
||||
}
|
||||
else
|
||||
{
|
||||
const int auxEdge = -1 - edge_i;
|
||||
const int auxEdge = FlipIndexSign(edge_i);
|
||||
GetAuxEdgeVertices(auxEdge, sverts);
|
||||
}
|
||||
|
||||
@@ -159,7 +159,7 @@ void NCNURBSExtension::FindAdditionalFacesSA(
|
||||
{
|
||||
if (edge < 0)
|
||||
{
|
||||
sideAuxEdges[s].Append(-1 - edge);
|
||||
sideAuxEdges[s].Append(FlipIndexSign(edge));
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -456,7 +456,7 @@ void NCNURBSExtension::FindAdditionalFacesSA(
|
||||
== afverts[j], "");
|
||||
}
|
||||
|
||||
ori_f2 = -1 - ori_f2;
|
||||
ori_f2 = FlipIndexSign(ori_f2);
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -468,7 +468,7 @@ void NCNURBSExtension::FindAdditionalFacesSA(
|
||||
}
|
||||
|
||||
facePairs.emplace_back(FacePairInfo{fverts[vMinID], f,
|
||||
SlaveFaceInfo{-1 - afid, ori_f2,
|
||||
SlaveFaceInfo{FlipIndexSign(afid), ori_f2,
|
||||
{fki(vMinID,0), fki(vMinID,1)},
|
||||
{
|
||||
fki((vMinID + 2) % 4,0) - fki(vMinID,0),
|
||||
@@ -509,7 +509,7 @@ void NCNURBSExtension::FindAdditionalFacesSA(
|
||||
auxFaces.push_back(auxFace);
|
||||
|
||||
facePairs.emplace_back(FacePairInfo{fverts[vMinID], f,
|
||||
SlaveFaceInfo{-1 - auxFaceId, ori_f,
|
||||
SlaveFaceInfo{FlipIndexSign(auxFaceId), ori_f,
|
||||
{fki(vMinID,0), fki(vMinID,1)},
|
||||
{
|
||||
fki((vMinID + 2) % 4,0) - fki(vMinID,0),
|
||||
@@ -622,7 +622,7 @@ void NCNURBSExtension::GetAuxFaceEdges(int auxFace, Array<int> &edges) const
|
||||
}
|
||||
else // Auxiliary edge
|
||||
{
|
||||
edges[i] = -1 - auxv2e.at(edge_v);
|
||||
edges[i] = FlipIndexSign(auxv2e.at(edge_v));
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -633,7 +633,7 @@ int OffsetHelper(int i, int j, const Array<int> &a, const Array<int> &b)
|
||||
{
|
||||
if (i < 0)
|
||||
{
|
||||
return b[-1 - i + j];
|
||||
return b[FlipIndexSign(i) + j];
|
||||
}
|
||||
else if (i + j < a.Size())
|
||||
{
|
||||
@@ -679,7 +679,7 @@ void NCNURBSExtension::GetMasterEdgeDofs(bool dof, int me,
|
||||
}
|
||||
else // Auxiliary edge
|
||||
{
|
||||
GetAuxEdgeVertices(-1 - slaveId, svert);
|
||||
GetAuxEdgeVertices(FlipIndexSign(slaveId), svert);
|
||||
}
|
||||
|
||||
bool reverse = false;
|
||||
@@ -872,7 +872,7 @@ void ReorderArray2D(int i0, int j0, const Array2D<int> &a,
|
||||
// Set a quadrilateral vertex index permutation for a given orientation.
|
||||
void GetVertexOrdering(int ori, std::array<int, 4> &perm)
|
||||
{
|
||||
const int oriAbs = ori < 0 ? -1 - ori : ori;
|
||||
const int oriAbs = UnsignIndex(ori);
|
||||
|
||||
for (int i=0; i<4; ++i)
|
||||
{
|
||||
@@ -1094,7 +1094,7 @@ void NCNURBSExtension::GetMasterFaceDofs(bool dof, int mf,
|
||||
if (slaveId < 0)
|
||||
{
|
||||
// Auxiliary face
|
||||
const int auxFace = -1 - slaveId;
|
||||
const int auxFace = FlipIndexSign(slaveId);
|
||||
|
||||
// Set slave face entity dimensions.
|
||||
if (dof)
|
||||
@@ -1171,7 +1171,7 @@ void NCNURBSExtension::GetMasterFaceDofs(bool dof, int mf,
|
||||
}
|
||||
else
|
||||
{
|
||||
const int auxEdge = -1 - edge;
|
||||
const int auxEdge = FlipIndexSign(edge);
|
||||
GetAuxEdgeVertices(auxEdge, evert);
|
||||
}
|
||||
MFEM_ASSERT(evert[0] == vstart || evert[1] == vstart, "");
|
||||
@@ -1184,7 +1184,7 @@ void NCNURBSExtension::GetMasterFaceDofs(bool dof, int mf,
|
||||
// dimensions of the master face, by using ori.
|
||||
int e1 = -1, e2 = -1;
|
||||
{
|
||||
const int aori = ori < 0 ? -1 - ori : ori;
|
||||
const int aori = UnsignIndex(ori);
|
||||
if (aori % 2 == 0)
|
||||
{
|
||||
e1 = 0;
|
||||
@@ -1416,14 +1416,15 @@ void NCNURBSExtension::ProcessVertexToKnot2D(const VertexToKnotSpan &v2k,
|
||||
{
|
||||
// Create a new auxiliary edge
|
||||
auxv2e[childPair] = auxEdges.size();
|
||||
auxEdges.emplace_back(AuxiliaryEdge{pv[0] < pv[1] ?
|
||||
parentEdge : -1 - parentEdge,
|
||||
auxEdges.emplace_back(AuxiliaryEdge{pv[0] < pv[1] ? parentEdge :
|
||||
FlipIndexSign(parentEdge),
|
||||
{childPair.first, childPair.second},
|
||||
{newParentEdge ? 0 : prevKI, ks}});
|
||||
}
|
||||
}
|
||||
|
||||
const int childEdge = childPairTopo ? v2e[childPair] : -1 - auxv2e[childPair];
|
||||
const int childEdge = childPairTopo ? v2e[childPair] :
|
||||
FlipIndexSign(auxv2e[childPair]);
|
||||
|
||||
// Check whether this is the final vertex in this parent edge. Note that
|
||||
// the logic for comparing (pv[0],pv[1]) to the next parents assumes the
|
||||
@@ -1460,14 +1461,15 @@ void NCNURBSExtension::ProcessVertexToKnot2D(const VertexToKnotSpan &v2k,
|
||||
|
||||
// -1 denotes `ne` at endpoint
|
||||
auxEdges.emplace_back(AuxiliaryEdge{pv[0] < pv[1] ?
|
||||
-1 - parentEdge : parentEdge,
|
||||
FlipIndexSign(parentEdge) :
|
||||
parentEdge,
|
||||
{finalChildPair.first, finalChildPair.second},
|
||||
{ks, -1}});
|
||||
}
|
||||
}
|
||||
|
||||
const int finalChildEdge = finalChildPairTopo ? v2e[finalChildPair] :
|
||||
-1 - auxv2e[finalChildPair];
|
||||
FlipIndexSign(auxv2e[finalChildPair]);
|
||||
edgePairs.emplace_back(-1, -1, finalChildEdge, parentEdge);
|
||||
}
|
||||
|
||||
@@ -1805,7 +1807,7 @@ void NCNURBSExtension::ProcessVertexToKnot3D(
|
||||
auxFaces.push_back(auxFace);
|
||||
facePairs.emplace_back(
|
||||
FacePairInfo{cv[0], parentFace,
|
||||
SlaveFaceInfo{-1 - auxv2f[childPair],
|
||||
SlaveFaceInfo{FlipIndexSign(auxv2f[childPair]),
|
||||
0, {i0, j0}, {d0, d1}}});
|
||||
}
|
||||
}
|
||||
@@ -2111,7 +2113,7 @@ void NCNURBSExtension::ProcessVertexToKnot3D(
|
||||
auxv2e[childPair] = auxEdges.size();
|
||||
auxEdges.emplace_back(AuxiliaryEdge{pv0 < pv1 ?
|
||||
parentEdge :
|
||||
-1 - parentEdge,
|
||||
FlipIndexSign(parentEdge),
|
||||
{childPair.first, childPair.second},
|
||||
{knotIndex0, knotIndex1}});
|
||||
}
|
||||
@@ -2131,7 +2133,8 @@ void NCNURBSExtension::ProcessVertexToKnot3D(
|
||||
|
||||
const EdgePairInfo ep_e((e_idx == n_d - de) ? -1 : tv,
|
||||
(e_idx == n_d - de) ? -1 : tvki,
|
||||
-1 - auxv2e[childPair], parentEdge);
|
||||
FlipIndexSign(auxv2e[childPair]),
|
||||
parentEdge);
|
||||
|
||||
const bool unset = !edgePairs[edgePairOS[parentEdge] + e_idx].isSet;
|
||||
if (unset)
|
||||
@@ -2226,7 +2229,7 @@ void NCNURBSExtension::GetAuxFaceToPatchTable(Array2D<int> &auxface2patch)
|
||||
if (s < 0)
|
||||
{
|
||||
// Auxiliary face.
|
||||
const int aux = -1 - s;
|
||||
const int aux = FlipIndexSign(s);
|
||||
if (auxface2patch(aux, 0) >= 0)
|
||||
{
|
||||
if (auxface2patch(aux, 1) != -1) { consistent = false; }
|
||||
@@ -2316,7 +2319,7 @@ void NCNURBSExtension::UpdateAuxiliaryKnotSpans(const Array<int> &rf)
|
||||
for (auto auxEdge : auxEdges)
|
||||
{
|
||||
const int p = auxEdge.parent;
|
||||
const int parent = p < 0 ? -1 - p : p;
|
||||
const int parent = UnsignIndex(p);
|
||||
const int kv = KnotInd(parent);
|
||||
for (int i=0; i<2; ++i)
|
||||
{
|
||||
@@ -2382,14 +2385,8 @@ int NCNURBSExtension::AuxiliaryEdgeNE(int aux_edge)
|
||||
const int signedParentEdge = auxEdges[aux_edge].parent;
|
||||
const int ki0 = auxEdges[aux_edge].ksi[0];
|
||||
const int ki1raw = auxEdges[aux_edge].ksi[1];
|
||||
int ki1 = ki1raw;
|
||||
if (ki1raw == -1)
|
||||
{
|
||||
const bool rev = signedParentEdge < 0;
|
||||
const int parentEdge = rev ? -1 - signedParentEdge : signedParentEdge;
|
||||
ki1 = KnotVec(parentEdge)->GetNE();
|
||||
}
|
||||
|
||||
const int ki1 = ki1raw == -1 ? KnotVec(UnsignIndex(signedParentEdge))->GetNE()
|
||||
: ki1raw;
|
||||
return ki1 - ki0;
|
||||
}
|
||||
|
||||
@@ -2403,7 +2400,7 @@ void NCNURBSExtension::SlaveEdgeToParent(int se, int parent,
|
||||
Array<int> sev(2);
|
||||
if (se < 0) // Auxiliary edge
|
||||
{
|
||||
for (int i=0; i<2; ++i) { sev[i] = auxEdges[-1 - se].v[i]; }
|
||||
for (int i=0; i<2; ++i) { sev[i] = auxEdges[FlipIndexSign(se)].v[i]; }
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -2459,7 +2456,7 @@ void NCNURBSExtension::GetMasterEdgePieceOffsets(int mid, Array<int> &os)
|
||||
}
|
||||
else
|
||||
{
|
||||
nes = AuxiliaryEdgeNE(-1 - s);
|
||||
nes = AuxiliaryEdgeNE(FlipIndexSign(s));
|
||||
}
|
||||
|
||||
os[i+1] = os[i] + nes;
|
||||
@@ -2565,7 +2562,7 @@ int NCNURBSExtension::SetPatchFactors(int p)
|
||||
}
|
||||
else // Aux edge
|
||||
{
|
||||
const int aux_edge = -1 - s;
|
||||
const int aux_edge = FlipIndexSign(s);
|
||||
if (auxef[aux_edge].Size() == 0)
|
||||
{
|
||||
auxef[aux_edge].SetSize(AuxiliaryEdgeNE(aux_edge));
|
||||
@@ -2611,7 +2608,7 @@ int NCNURBSExtension::SetPatchFactors(int p)
|
||||
}
|
||||
|
||||
MFEM_VERIFY(consistent, "");
|
||||
return partialChange ? -1 - dirSet : dirSet;
|
||||
return partialChange ? FlipIndexSign(dirSet) : dirSet;
|
||||
}
|
||||
|
||||
void NCNURBSExtension::PropagateFactorsForKV(int rf_default)
|
||||
@@ -2715,7 +2712,7 @@ void NCNURBSExtension::PropagateFactorsForKV(int rf_default)
|
||||
if (s < 0)
|
||||
{
|
||||
// Auxiliary face.
|
||||
const int aux = -1 - s;
|
||||
const int aux = FlipIndexSign(s);
|
||||
for (int i=0; i<2; ++i)
|
||||
{
|
||||
const int patch = auxface2patch(aux, i);
|
||||
@@ -2763,7 +2760,7 @@ void NCNURBSExtension::PropagateFactorsForKV(int rf_default)
|
||||
|
||||
const int dirSetSigned = SetPatchFactors(p);
|
||||
const bool partialChange = dirSetSigned < 0;
|
||||
const int dirSet = partialChange ? -1 - dirSetSigned : dirSetSigned;
|
||||
const int dirSet = UnsignIndex(dirSetSigned);
|
||||
const bool changed = (patchState[p] != dirSet) || partialChange;
|
||||
patchState[p] = dirSet;
|
||||
|
||||
@@ -2806,8 +2803,8 @@ void NCNURBSExtension::PropagateFactorsForKV(int rf_default)
|
||||
{
|
||||
const int dirSetSigned_i = SetPatchFactors(i);
|
||||
const bool partialChange_i = dirSetSigned_i < 0;
|
||||
const int dirSet_i = partialChange_i ? -1 - dirSetSigned_i :
|
||||
dirSetSigned_i;
|
||||
const int dirSet_i = partialChange_i ?
|
||||
FlipIndexSign(dirSetSigned_i) : dirSetSigned_i;
|
||||
const bool changed_i = (patchState[i] != dirSet_i) ||
|
||||
partialChange_i;
|
||||
patchState[p] = dirSet_i;
|
||||
@@ -3027,7 +3024,7 @@ int GetFaceOrientation(const Mesh *mesh, const int face,
|
||||
|
||||
// Check whether ordering is reversed.
|
||||
const bool rev = verts[(s + 1) % 4] != fverts[1];
|
||||
if (rev) { s = -1 - s; } // Reversed order is encoded by the sign.
|
||||
if (rev) { s = FlipIndexSign(s); } // Reversed order is encoded by the sign.
|
||||
return s;
|
||||
}
|
||||
|
||||
@@ -3040,7 +3037,7 @@ int GetFaceOrientation(const Mesh *mesh, const int face,
|
||||
// see GetFaceOrientation.
|
||||
bool Reorder2D(int ori, std::array<int, 2> &s0)
|
||||
{
|
||||
const int shift = ori < 0 ? -1 - ori : ori;
|
||||
const int shift = UnsignIndex(ori);
|
||||
|
||||
// Shift is an F1 index in the counter-clockwise ordering of 4 quad vertices.
|
||||
// Now find the (i,j) indices of this index, with i,j in {0,1}.
|
||||
@@ -3064,7 +3061,7 @@ void GetInverseShiftedDimensions2D(int signedShift, int sm, int sn, int &m,
|
||||
int &n)
|
||||
{
|
||||
const bool rev = (signedShift < 0);
|
||||
const int shift = rev ? -1 - signedShift : signedShift;
|
||||
const int shift = UnsignIndex(signedShift);
|
||||
MFEM_ASSERT(0 <= shift && shift < 4, "");
|
||||
|
||||
// We consider 8 cases for the possible values of rev and shift.
|
||||
@@ -3136,7 +3133,7 @@ void GetShiftedGridPoints2D(int m, int n, int i, int j, int signedShift,
|
||||
int& sm, int& sn, int& si, int& sj)
|
||||
{
|
||||
const bool rev = (signedShift < 0);
|
||||
const int shift = rev ? -1 - signedShift : signedShift;
|
||||
const int shift = UnsignIndex(signedShift);
|
||||
MFEM_ASSERT(0 <= shift && shift < 4, "");
|
||||
|
||||
// (0,0) <= (i,j) < (m,n) are old indices, and old vertex [shift] maps
|
||||
@@ -3798,8 +3795,7 @@ void NCNURBSExtension::GenerateOffsets()
|
||||
const int signedParentEdge = auxEdges[e].parent;
|
||||
const int ki0 = auxEdges[e].ksi[0];
|
||||
const int ki1raw = auxEdges[e].ksi[1];
|
||||
const bool rev = signedParentEdge < 0;
|
||||
const int parentEdge = rev ? -1 - signedParentEdge : signedParentEdge;
|
||||
const int parentEdge = UnsignIndex(signedParentEdge);
|
||||
const int masterNE = KnotVec(parentEdge)->GetNE();
|
||||
const int ki1 = ki1raw == -1 ? masterNE : ki1raw;
|
||||
const int perEdgeCP = GetNCPperEdge(KnotVec(e));
|
||||
|
||||
+11
-15
@@ -3723,10 +3723,7 @@ bool NURBSExtension::CheckPatches()
|
||||
for (int i = 0; i < edges.Size(); i++)
|
||||
{
|
||||
edges[i] = edge_to_ukv[edges[i]];
|
||||
if (oedge[i] < 0)
|
||||
{
|
||||
edges[i] = -1 - edges[i];
|
||||
}
|
||||
if (oedge[i] < 0) { edges[i] = FlipIndexSign(edges[i]); }
|
||||
}
|
||||
|
||||
// In 2d - opposite edges must be same knotvector with opposite sign.
|
||||
@@ -3740,7 +3737,7 @@ bool NURBSExtension::CheckPatches()
|
||||
// {7, 6}, {4, 7}, {0, 4}, {1, 5}, {2, 6}, {3, 7} for Geometry::CUBE in 3D
|
||||
// See fem/geom.cpp for these definitions.
|
||||
if ((dim == 2 &&
|
||||
(edges[0] != -1 - edges[2] || edges[1] != -1 - edges[3])) ||
|
||||
(edges[0] != FlipIndexSign(edges[2]) || edges[1] != FlipIndexSign(edges[3]))) ||
|
||||
|
||||
(dim == 3 &&
|
||||
(edges[0] != edges[2] || edges[0] != edges[4] ||
|
||||
@@ -3769,7 +3766,7 @@ void NURBSExtension::CheckBdrPatches()
|
||||
edges[i] = edge_to_ukv[edges[i]];
|
||||
if (oedge[i] < 0)
|
||||
{
|
||||
edges[i] = -1 - edges[i];
|
||||
edges[i] = FlipIndexSign(edges[i]);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -4766,14 +4763,13 @@ void NURBSExtension::GenerateBdrElementDofTable()
|
||||
SetPatchToBdrElements();
|
||||
|
||||
int *dof = bel_dof->GetJ();
|
||||
int ndof = bel_dof->Size_of_connections();
|
||||
const int ndof = bel_dof->Size_of_connections();
|
||||
for (int i = 0; i < ndof; i++)
|
||||
{
|
||||
int idx = dof[i];
|
||||
const int idx = dof[i];
|
||||
if (idx < 0)
|
||||
{
|
||||
dof[i] = -1 - (activeDof[-1-idx] - 1);
|
||||
dof[i] = -activeDof[-1-idx];
|
||||
dof[i] = -activeDof[FlipIndexSign(idx)];
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -4858,12 +4854,12 @@ void NURBSExtension::Generate2DBdrElementDofTable()
|
||||
for (int ii = 0; ii <= ord0; ii++)
|
||||
{
|
||||
conn.to = DofMap(p2g[(okv[0] >= 0) ? (i+ii) : (nx-i-ii)]);
|
||||
if (s == -1) { conn.to = -1 -conn.to; }
|
||||
if (s == -1) { conn.to = FlipIndexSign(conn.to); }
|
||||
bel_dof_list.Append(conn);
|
||||
}
|
||||
}
|
||||
bel_to_patch[lbe] = b;
|
||||
bel_to_IJK(lbe,0) = (okv[0] >= 0) ? i : (-1-i);
|
||||
bel_to_IJK(lbe,0) = (okv[0] >= 0) ? i : FlipIndexSign(i);
|
||||
lbe++;
|
||||
}
|
||||
gbe++;
|
||||
@@ -4936,14 +4932,14 @@ void NURBSExtension::Generate3DBdrElementDofTable()
|
||||
{
|
||||
const int ii_ = (okv[0] >= 0) ? (i+ii) : (nx-i-ii);
|
||||
conn.to = DofMap(p2g(ii_, jj_));
|
||||
if (s == -1) { conn.to = -1 -conn.to; }
|
||||
if (s == -1) { conn.to = FlipIndexSign(conn.to); }
|
||||
bel_dof_list.Append(conn);
|
||||
}
|
||||
}
|
||||
}
|
||||
bel_to_patch[lbe] = b;
|
||||
bel_to_IJK(lbe,0) = (okv[0] >= 0) ? i : (-1-i);
|
||||
bel_to_IJK(lbe,1) = (okv[1] >= 0) ? j : (-1-j);
|
||||
bel_to_IJK(lbe,0) = (okv[0] >= 0) ? i : FlipIndexSign(i);
|
||||
bel_to_IJK(lbe,1) = (okv[1] >= 0) ? j : FlipIndexSign(j);
|
||||
lbe++;
|
||||
}
|
||||
gbe++;
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user