Compare commits

...
Author SHA1 Message Date
Andreas Schafelner bca9363172 Fixed some bugs introduced by the previous commit. 2026-08-10 11:36:14 +02:00
Tamas Horvath 85785a1d51 WIP: updating the branch 2025-11-28 20:16:14 -05:00
Andreas Schafelner 4f4c8bb000 Added more pentatope quadrature rules. 2024-09-17 18:32:36 +02:00
Andreas Schafelner 6245cb6df3 Added new pentatope quadratures and corresponding unit tests. 2024-05-29 21:16:47 +02:00
Andreas Schafelner 3839122306 Merge branch 'master' into 4d_dev 2021-04-12 09:33:58 +02:00
Andreas Schafelner 7be65f6362 Used the new constructor for 4D meshes in
ex14 and ex14p.
2020-12-04 16:41:50 +01:00
Andreas Schafelner 7c580696ed Added new constructor for 4D meshes which performs
a tensor-product extension in time.
2020-12-04 13:37:28 +01:00
Andreas Schafelner 7efaaddb48 Rewrote the Make4D constructor for Mesh. Now you
can create a 4-parallelotope in the same way as in 3D.
2020-12-03 13:41:39 +01:00
Andreas Schafelner 91ea8c521f Fixes for 4D DG. 2020-12-02 13:04:01 +01:00
Andreas Schafelner 98f3cf0b7d Fixes for 4D DG. 2020-12-02 12:30:47 +01:00
Andreas Schafelner 6fc5954c83 Fix for wrong DShape for L2_PentatopeElement 2020-12-02 12:00:19 +01:00
Andreas Schafelner b27f142a8d Fixed size of array for 4D. 2020-07-31 16:32:27 +02:00
aschaf b7ac27d6a5 Small fix for hexahedra meshes. 2019-12-06 08:48:51 +01:00
aschaf 5cede87cc3 Added 4D case for three methods. 2019-11-18 13:23:05 +01:00
aschaf b44ba89cc1 Fixed one example. 2019-10-21 14:24:32 +02:00
aschaf 20c7ddd40f Fixed prolongation matrces in 4D. 2019-10-21 14:23:43 +02:00
aschaf d2507c2d19 Small change for the CFOSLS fork of mfem. 2019-10-09 14:50:22 +02:00
Andreas Schafelner daef4a707f Changed output of FGMRES to resemble GMRES 2019-10-04 17:02:25 -07:00
Andreas Schafelner 3f4f2b5d7d Bugfix for Mixedbilinearform::Update 2019-10-04 17:01:29 -07:00
Andreas Schafelner b2e381995b Small fixes.
Changed the quad rule for pentatopes for some orders back to the Duffy
transformed ones, to avoid negative weights.
2019-09-09 09:42:46 -07:00
Andreas Schafelner ffac92f50f Possible fix for initial ParMesh distribution in 4D 2019-08-22 14:29:49 -07:00
Andreas Schafelner 3ac0713e7d Changed ordering of Pentatope faces. 2019-08-22 14:25:24 -07:00
Andreas Schafelner 91e2a491ac Partial fix for ParMesh distribution in 4D. 2019-08-20 13:53:39 -07:00
Andreas Schafelner e1dc14506a Small test fix for load distribution when initializing the ParMesh. 2019-08-19 17:07:59 -07:00
Andreas Schafelner b2a5a8818c Fixed element transforms for pentatopes. 2019-08-16 10:17:18 -07:00
Andreas Schafelner 9a7d02214f Added parallelisation for bisection in 4D
> currently tested are first and second order H1 elements and first and
second order RT elements
> parallel tests so far up to 4 cores
2019-08-13 12:56:10 -07:00
Andreas Schafelner e69123dbb2 Added parallel uniform bisection in 4D.
Jacobi determinant can and will be still negative for some elements.
So far only tested locally with up to 8 cores.
2019-08-02 15:16:06 -07:00
Andreas Schafelner 1b23c0b85f Added a flag to indicate if mesh is reflected. 2019-07-30 14:06:50 -07:00
Andreas Schafelner a80a46a45e First working(?) version of Stevenson bisection.
Why it works? I have no idea. :-)
2019-07-25 16:22:33 -07:00
Andreas Schafelner 58e416cd4c Fixed the size of some arrays for 4d. 2019-07-18 13:05:40 -07:00
Andreas Schafelner 5431f28f2b Added an additional option for HypreSmoother
For the Chebyshev smoother, you can choose how many CG iterations to use in order to obtain an estimate for the eigenvalues.
2019-07-18 13:03:43 -07:00
aschaf fc3775d549 Reworked the 4D conforming Mesh.
Now the element gets reordered to keep the Jacobi determinant positive
and it stays positive during subsequent uniform refinement.

IMPORTANT: So far, the non-conforming 4D mesh only works when the
fix_orientation flag in the constructor of Mesh is set to false. And the
elements are thus not reordered and the Jacobi determinant can and will
be negative.
2019-05-28 13:36:18 +02:00
aschaf ee8f81e9b7 Added a Set4 method. 2019-05-28 13:33:20 +02:00
aschaf ea5cbfa45d Extended the Update method for MixedBilinearForm.
You can now update the FESpaces from outside.
2019-05-28 11:31:23 +02:00
aschaf 0a178223f4 Removed the absolute value for the transformation weights. 2019-05-28 11:29:44 +02:00
aschaf 15b369d120 Added a new LinearFormIntegrator.
DomainGradLFIntegrator represents right hand sides of the form
f*a.grad(v), where a is some vector coeffcient.
2019-05-28 11:26:16 +02:00
aschaf 10d543419a Added arbitrary order RT Elements for 4D. 2019-05-28 11:24:38 +02:00
Tzanio 2a2b5b3314 Default build for 4D AMR 2019-04-04 08:06:16 -07:00
Tzanio 0e2670e6ba make style 2019-04-04 08:03:59 -07:00
aschaf 9cb6ac90f4 More bugfixes. 2019-04-01 19:18:33 +02:00
aschaf dc92de7607 Bugfixes. 2019-04-01 18:08:59 +02:00
aschaf 838f32d052 Merge branch 'master' into 4d_dev 2019-03-29 23:50:55 +01:00
aschaf 6edbdb10b6 Added an example for 4D adaptivity.
Its just ex6 plus the necessary options for 4D.
2019-03-18 16:53:43 +01:00
aschaf 051dd436a7 Added a simple example to solve the heat equation.
Uses the HeatEquationIntegrator.
2019-03-15 11:09:00 +01:00
aschaf ed0a53fc21 Corrected HeatEquationIntegrator 2019-03-15 11:08:19 +01:00
aschaf bc3b20756a Added three simple space-time domains.
Unit interval, unit square and unit cube, with time interval [0,1]
2019-03-15 11:07:15 +01:00
aschaf 2ec070cfcd Added entries for 4d examples. 2019-03-14 19:45:43 +01:00
aschaf e247a48496 small fix. 2019-03-14 19:20:30 +01:00
aschaf ce357b3d31 Added the absolute value to the Jacobi Determinants for some
integrators.
2019-03-14 19:19:12 +01:00
aschaf 3b93842ed4 Modified to build. 2019-03-14 18:51:29 +01:00
aschaf 7247a056c0 Fixed enum in 4d geometries. 2019-03-14 17:35:34 +01:00
aschaf 1d5c78afaf Added methods for interior face linearform integrators. 2019-03-08 15:11:32 +01:00
aschaf 51cabe4530 Fixed a bug for the point matrices of the slave planars. 2018-11-08 16:12:40 +01:00
aschaf b5ad79948a Degree 3 int. rule in 4D is not exact. 2018-10-25 16:51:16 +02:00
aschaf 13087639e4 Bugfix for parallel 4D.
Also, the 4D NCMesh does currently not work with MFEM_USE_MEMALLOC, as i
don't know how to transfer the MemAlloc object from one mesh to another.
2018-10-24 11:11:13 +02:00
aschaf 8bb3c1f88f Small oversight 2018-10-19 09:58:18 +02:00
aschaf 1fb24abeb7 Bugfix for higher order elements 2018-10-18 11:23:24 +02:00
aschaf 3c84979ae1 Changed the 4D code to reflect the changes from prism-dev
I added a new array & group for the shared faces in 4D (tetrahedra from
simplical meshes). The 2 dimensional planars are now stored in the
triangle array & group. Updated also RefineGroups4D and FinalizeParTopo.
2018-10-18 10:46:27 +02:00
aschaf cc77cad832 Updated some functions to the 4D case 2018-10-18 10:37:00 +02:00
aschaf 39b4d088fc changed return value of GetType to the new API 2018-10-18 10:05:50 +02:00
aschaf 994bf59afa Some changes of int to Geometry::Type 2018-10-18 10:05:06 +02:00
aschaf 051642a9b8 Try to Merge branch 'master' into 4d_dev 2018-10-12 15:03:51 +02:00
aschaf f27dbc30d5 Added a basic HeatEquationIntegrator
Solves the heat equation (with scalar diffusion coeff) by a space-time
method. I will add an example using this Integrator later.
2018-10-11 13:50:11 +02:00
aschaf e945f6cf49 Added ParNCMesh for 4D (WIP!!)
> so far, it just enables you to use ParNCMesh in 4D for 1 processor
only (I wanted to wait for all the changes in the Prism PR)
> added also the necessary basic functionalities to ParFESpace
2018-10-11 13:46:01 +02:00
aschaf 89f7f93f36 Fixed the missing planar cases for GetBoundrayClosure
> now it should correctly find "hidden" master planars
2018-10-11 13:15:36 +02:00
aschaf 6da740baf0 Bugfix in GetFaceDofs for 4D
In principle, non-conforming adaptive refinement for 4D meshes works now
with an arbitrary order H1_FESpace. However, this needs to be tested
more, as there are still some special cases which are not covered.
2018-10-11 09:48:29 +02:00
aschaf 61f084e34c Some additions to NCMesh for 4D
> Moved TraverseFace for 4D to its own implementation, with an
additional argument to indicate its local face index (needed to generate
the right path)
> Added some first implementations of functions needed for ParNCMesh
(WIP)
> Removed a check in NCMesh::PrintElements to enable printing more than
8 children (16 in 4D)
> Some minor fixes
2018-10-11 09:42:06 +02:00
aschaf a426d939a3 Small fix and removal of some debug text 2018-10-10 09:04:56 +02:00
aschaf f7e6beb99f Some additions to 4d L2_FECollection 2018-10-01 09:35:24 +02:00
aschaf d9824c7578 Some small fixes 2018-10-01 09:20:19 +02:00
kalchev1 23b3e7dcbc Small additions by Chak and Kirill that allow the 4D ParElag to run. However, there seem to be a deeper issue currently, since the mass integrator in 4D returns some negative diagonal entries in the mass matrix. 2018-09-27 14:57:58 -07:00
aschaf 8f94150a3e Fixed conforming 4D Mesh
Refinement works now, but Weight of Jacobian can be negative
Also added some additional tables for 4D planars
2018-09-24 14:46:12 +02:00
aschaf 0a19f04474 Nonconforming refinement in 4D
Had to disable the swapping, so conforming 4D meshes do not work atm.
2018-09-17 13:41:29 +02:00
aschaf aa1cb6f840 Changed MFEM_VERIFY to include 4D 2018-09-12 17:13:41 +02:00
aschaf ac6016dd0c Finished 4D NC refinement
removed swapping of elements to get positive determinant
2018-09-12 17:09:10 +02:00
aschaf ca4bd46f2f Removed ex4D_DivSkew from makefile 2018-09-11 10:38:23 +02:00
aschaf 801430150b Another bugfix 2018-09-11 09:53:21 +02:00
aschaf 9008f02d15 Minor bugfixes 2018-09-10 21:28:37 +02:00
aschaf 80f0b1f2d5 Merge branch 'master' into 4d_dev 2018-09-10 16:38:51 +02:00
aschaf 13ba92ccf1 Added GetFacePlanars and GetFacePlanarTable 2018-09-10 16:32:35 +02:00
aschaf 67480e6ca5 Finished BuildConformingInterpolation for 4D, still needs to be tested 2018-09-10 16:31:26 +02:00
aschaf e4c43532b4 fixed constructor call 2018-09-07 17:03:05 +02:00
aschaf 3b2604e582 initialize pdofs and npdofs in default constructor 2018-09-07 15:30:24 +02:00
aschaf 42db0cd988 revert change from before 2018-09-07 14:57:11 +02:00
aschaf 0f7e0de3d5 Started implementing 4D NCMeshes.
The handling of the tetrahedral faces is for now dirty, I will change
this later. Nonconforming Refinement of 4D simplical meshes works for
now only once.
2018-09-07 14:56:58 +02:00
aschaf 5c58758fda New Hash object Hashed5 (works like Hashed4)
For 4D NCMeshes, i needed to store all 4 vertices of a face, so Hashed5
is now 5 vertices where only 4 are hashed.
2018-09-07 14:54:21 +02:00
aschaf de79f0243f Implementation needed for NCMesh 2018-09-07 14:52:40 +02:00
aschaf 247b4d9fdf Some preparations for 4D NCMeshes 2018-09-07 14:52:08 +02:00
aschaf 0eabd62aa9 Removed some not yet implemented call 2018-09-07 14:47:06 +02:00
aschaf 179e702e5b Preparations for 4D NCMeshes
Small bugfix in GetBdrElementDofs
2018-09-07 14:40:16 +02:00
aschaf 3dfaa64744 DeleteLazyTables also in 4D 2018-09-07 14:03:21 +02:00
aschaf bf6262daf4 Added GeomToPerfGeomJac and PerfGeomToGeomJac for Pentatopes 2018-09-07 09:54:44 +02:00
aschaf d09acbceff Expanded CalcSingularValue(i) for higher dimensions 2018-09-07 09:53:05 +02:00
aschaf e4f2b4fd0d Restored ex4 for 2D/3D 2018-09-07 09:51:04 +02:00
aschaf d60393edb0 Using now RefineGroups(HashTable<Hashed2>) for 4D refinement 2018-09-04 11:21:49 +02:00
aschaf 03bffe438b Updated 4D refinement to use HashTable<Hashed2>
Also restored original, working 4D refinement code
2018-09-04 09:45:01 +02:00
aschaf e249c0889b Changed asserts to include 4D 2018-09-04 09:44:26 +02:00
aschaf be90d1179e Removed some printf 2018-09-04 09:44:06 +02:00
aschaf 2da040c52a Removed NCMesh for 4D, caused segfault before main
Currently, the H1_FECollection is conforming in 4D, however uniform refinement in 4D does no longer work (WIP)
2018-08-31 16:19:05 +02:00
aschaf 9fdf71b028 Some bugfixes 2018-08-31 15:02:08 +02:00
aschaf ecf5954f66 Merge branch 'master' into 4d_dev 2018-08-31 12:55:33 +02:00
aschaf 08cbd00509 Debug messages for 4D 2018-08-31 10:17:53 +02:00
aschaf ceb7c8efbc Changed order of Pentatope Vertices
some DEBUG and WIP for 4D meshes
2018-08-31 10:16:56 +02:00
aschaf b8aa9b705c Started implementing 4D Ncmesh 2018-08-31 10:14:22 +02:00
aschaf 3ea14703e2 Started implementing NCMesh for pentatopes 2018-07-26 17:16:43 +02:00
aschaf cc74c87a1a Bugfix 2018-07-26 10:25:02 +02:00
aschaf 031722a50c Some minor additions. 2018-07-24 11:23:57 +02:00
aschaf 4cac7186b3 Some additional functionalities
Changed formula for 2nd deriv. of CalcChebyshev like in master
Found bug in CalcHessian for H1_PentatopeElement
Added tetrahedron orientations to Geometry::Constants
Expanded GrundmannMollerSimplesRule for 4D
Changed Pentatope integration rules to said GrundmannMollerSimplexRules
Adapted some MFEM_ASSERTS in DenseMatrix for 4D
Added Mesh::GetLocalTetToPentTransformation
Extended Mesh::GetLocalFaceTransformatoin with the tetrahedron case
Extended Mesh::GetRefinementTransforms for Pentatopes
Added GetPointMatrix static method to Pentatope class

FESpace::Update should now correctly create the Update Matrix for Gridfunctions
2018-07-24 11:04:32 +02:00
aschaf 92d12f61a2 Corrected the generation of TetDofOrd in H1_FECollection::H1_FECollection(...) 2018-06-25 11:04:32 +02:00
aschaf da86aaa1fe Added CalcHessian to H1_TriangleElement.
Added CalcHessian to H1_PentatopeElement.
Tried to extend the loops for the triangle dof orientations to the tetrahedron case, but I'm somewhat stuck. Currently H1_PentatopeElement produces correct results up to order 4.
2018-05-18 10:43:20 +02:00
aschaf 0f0d05726b Added H1_PentatopeElement (still testing). 2018-05-14 17:29:26 +02:00
aschaf 90b7c2275b Forgot parantheses. 2018-05-08 09:47:24 +02:00
Andreas Schafelner fcf1e7ae09 Implemented CalcHessian for H1_Tetrahedron element.
Also added a third Poly_1D::CalcChebyshev, which returns in addition the second derivative of the Chebyshev polynomials.
2018-05-08 09:23:11 +02:00
aschaf 5adf8ca172 Fixed a memory leak in Mesh::AddTetrahedralFaceElement. 2018-02-27 14:19:37 +01:00
aschaf 827eafe635 Added the case 4x3 for DenseMatrix::Weigth 2018-02-23 16:34:14 +01:00
aschaf b2a3d478a7 Added the case Pentatope to Geometry::ProjectPoint 2018-02-23 16:33:28 +01:00
aschaf ed02f2a25c Implemented CalcHessian for Quadratic finite elements (3D,4D) and cubic finite elements (3D). 2018-02-23 16:31:35 +01:00
Freki fa695a71c5 changed the allocated memory for TransformBack from the 3d case to the 4d case. 2018-02-23 16:19:31 +01:00
Tzanio 300bf6ebea make style 2017-08-29 18:16:56 -07:00
Tzanio 35934ddd46 Merge branch 'master' into 4d_dev 2017-08-29 18:16:24 -07:00
neumueller ab426339f1 changed the standard mesh-file to an existing one 2017-08-28 10:56:49 +02:00
neumueller 92b8ebbeaf reordered the assembling of the rhs 2017-08-25 21:52:41 +02:00
neumueller 817fb5d549 removed memory leaks in the DivSkew example 2017-08-25 13:06:27 +02:00
neumueller 6c767f02f2 added the start and end weights for the H(curl) example 2017-08-25 11:12:14 +02:00
neumueller 88da01bd32 removed some memory leaks in the H(curl) example 2017-08-25 11:10:32 +02:00
neumueller 45dea7453f modiefied the exact solution (such that it allows homogenuous neumann bc on a cube) 2017-08-25 10:25:35 +02:00
neumueller 779803d48f removed some memory leaks 2017-08-25 10:00:33 +02:00
neumueller 6c728dfc40 reduced the number of max. pcg iterations 2017-08-24 16:51:58 +02:00
neumueller 47054c792f minor modifications 2017-08-24 16:44:02 +02:00
neumueller 90d919c7a9 added an exact solution for the H1-problem 2017-08-24 14:36:38 +02:00
neumueller 06950f2249 some minor modifications 2017-08-24 11:26:00 +02:00
neumueller 1f92f750ed added mass weights for the operators DivSkew and div 2017-08-24 11:16:52 +02:00
neumueller 620edaad46 modified the gradient example for weighted mass 2017-08-24 10:59:46 +02:00
neumueller cb84230765 fixed a bug 2017-08-24 10:44:30 +02:00
neumueller 664959bc2a modified the grad and curl example such that it runs several tests for different weights of the mass term 2017-08-24 10:38:01 +02:00
neumueller e01483f8e4 modified the vector bilinear integrator to allow coefficients and vdims different from space-dim 2017-08-23 16:15:22 +02:00
neumueller 7a665f97ac added some example files for 4d test problems with variable coefficients 2017-08-23 16:09:59 +02:00
neumueller e8d880f923 added some files to the CMakeList.txt 2017-06-14 22:26:30 +02:00
neumueller d8df32549e added the header file pentatope.hpp in mesh.hpp 2017-06-14 22:11:34 +02:00
neumueller 3e34a1342c removed a bug for the debug version 2017-06-14 22:04:25 +02:00
Tzanio 84e24629d8 make style 2017-06-13 10:30:08 -07:00
Martin Neumüller 30669fd6ee Merge branch 'master' into 4d_dev 2017-06-13 18:18:53 +02:00
neumueller cea505df7a added the lowest order H(div) finite element space
the included auxiliary space preconditioner has to be compared and checked  with the theory
2017-04-21 01:04:44 +02:00
neumueller 498ef892ac a first version of the lowest order H(DivSkew)-elements (2forms) with auxiliary space preconditioner 2017-04-20 21:07:01 +02:00
neumueller 8ad9e29dd6 added support for the lowest order 4d-H(curl) elements (1st and 2nd kind) 2017-04-20 00:14:19 +02:00
neumueller 3aa3ae43f3 a first simple version for handling 4d-simplex meshes (at least example ex1p is running) 2017-04-18 23:39:27 +02:00
neumueller 439436f44b test for commiting the first simple change 2017-04-18 19:45:46 +02:00
68 changed files with 15075 additions and 250 deletions
+102
View File
@@ -0,0 +1,102 @@
MFEM mesh v1.0
dimension
4
elements
24
1 7 4 5 8 11 13
1 7 1 4 5 7 8
1 7 1 4 5 8 11
1 7 1 5 8 11 13
1 7 1 5 7 8 13
1 7 4 5 7 8 13
1 7 1 3 4 8 11
1 7 1 3 4 5 11
1 7 1 5 10 11 13
1 7 1 8 10 11 13
1 7 1 3 5 10 11
1 7 1 2 3 5 10
1 7 0 1 3 4 8
1 7 0 1 4 7 8
1 7 1 5 6 7 13
1 7 1 6 7 8 13
1 7 6 7 8 13 15
1 7 4 7 8 13 15
1 7 4 8 12 13 15
1 7 4 8 11 12 13
1 7 6 8 13 14 15
1 7 1 6 8 13 14
1 7 1 8 9 10 13
1 7 1 8 9 13 14
boundary
48
1 4 0 1 3 4
1 4 0 1 3 8
1 4 0 3 4 8
1 4 0 1 4 7
1 4 0 1 7 8
1 4 0 4 7 8
1 4 1 4 5 7
1 4 1 3 8 11
1 4 1 3 4 5
1 4 1 5 10 13
1 4 1 8 10 11
1 4 1 3 10 11
1 4 1 2 3 5
1 4 1 2 3 10
1 4 1 2 5 10
1 4 1 5 6 7
1 4 1 5 6 13
1 4 1 6 7 8
1 4 1 6 8 14
1 4 1 6 13 14
1 4 1 8 9 10
1 4 1 9 10 13
1 4 1 8 9 14
1 4 1 9 13 14
1 4 2 3 5 10
1 4 3 4 8 11
1 4 3 4 5 11
1 4 3 5 10 11
1 4 4 5 11 13
1 4 4 5 7 13
1 4 4 7 8 15
1 4 4 7 13 15
1 4 4 8 12 15
1 4 4 12 13 15
1 4 4 8 11 12
1 4 4 11 12 13
1 4 5 10 11 13
1 4 5 6 7 13
1 4 6 7 8 15
1 4 6 7 13 15
1 4 6 8 14 15
1 4 6 13 14 15
2 4 8 10 11 13
2 4 8 12 13 15
2 4 8 11 12 13
2 4 8 13 14 15
2 4 8 9 10 13
2 4 8 9 13 14
vertices
16
4
0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000
1.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000
1.0000000000000000 1.0000000000000000 0.0000000000000000 0.0000000000000000
0.0000000000000000 1.0000000000000000 0.0000000000000000 0.0000000000000000
0.0000000000000000 1.0000000000000000 1.0000000000000000 0.0000000000000000
1.0000000000000000 1.0000000000000000 1.0000000000000000 0.0000000000000000
1.0000000000000000 0.0000000000000000 1.0000000000000000 0.0000000000000000
0.0000000000000000 0.0000000000000000 1.0000000000000000 0.0000000000000000
0.0000000000000000 0.0000000000000000 0.0000000000000000 1.0000000000000000
1.0000000000000000 0.0000000000000000 0.0000000000000000 1.0000000000000000
1.0000000000000000 1.0000000000000000 0.0000000000000000 1.0000000000000000
0.0000000000000000 1.0000000000000000 0.0000000000000000 1.0000000000000000
0.0000000000000000 1.0000000000000000 1.0000000000000000 1.0000000000000000
1.0000000000000000 1.0000000000000000 1.0000000000000000 1.0000000000000000
1.0000000000000000 0.0000000000000000 1.0000000000000000 1.0000000000000000
0.0000000000000000 0.0000000000000000 1.0000000000000000 1.0000000000000000
+102
View File
@@ -0,0 +1,102 @@
MFEM mesh v1.0
dimension
4
elements
24
17 8 4 5 8 11 13
11 8 1 4 5 7 8
15 8 1 4 5 8 11
16 8 1 5 8 11 13
12 8 1 5 7 8 13
13 8 4 5 7 8 13
7 8 1 3 4 8 11
2 8 1 3 4 5 11
4 8 1 5 10 11 13
10 8 1 8 10 11 13
3 8 1 3 5 10 11
1 8 1 2 3 5 10
6 8 0 1 3 4 8
8 8 0 1 4 7 8
5 8 1 5 6 7 13
20 8 1 6 7 8 13
19 8 6 7 8 13 15
14 8 4 7 8 13 15
21 8 4 8 12 13 15
22 8 4 8 11 12 13
23 8 6 8 13 14 15
24 8 1 6 8 13 14
9 8 1 8 9 10 13
18 8 1 8 9 13 14
boundary
48
1 4 0 1 3 4
3 4 0 1 3 8
3 4 0 3 4 8
1 4 0 1 4 7
3 4 0 1 7 8
3 4 0 4 7 8
1 4 1 4 5 7
3 4 1 3 8 11
1 4 1 3 4 5
3 4 1 5 10 13
3 4 1 8 10 11
3 4 1 3 10 11
1 4 1 2 3 5
3 4 1 2 3 10
3 4 1 2 5 10
1 4 1 5 6 7
3 4 1 5 6 13
3 4 1 6 7 8
3 4 1 6 8 14
3 4 1 6 13 14
3 4 1 8 9 10
3 4 1 9 10 13
3 4 1 8 9 14
3 4 1 9 13 14
3 4 2 3 5 10
3 4 3 4 8 11
3 4 3 4 5 11
3 4 3 5 10 11
3 4 4 5 11 13
3 4 4 5 7 13
3 4 4 7 8 15
3 4 4 7 13 15
3 4 4 8 12 15
3 4 4 12 13 15
3 4 4 8 11 12
3 4 4 11 12 13
3 4 5 10 11 13
3 4 5 6 7 13
3 4 6 7 8 15
3 4 6 7 13 15
3 4 6 8 14 15
3 4 6 13 14 15
5 4 8 10 11 13
5 4 8 12 13 15
5 4 8 11 12 13
5 4 8 13 14 15
5 4 8 9 10 13
5 4 8 9 13 14
vertices
16
4
0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000
1.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000
1.0000000000000000 1.0000000000000000 0.0000000000000000 0.0000000000000000
0.0000000000000000 1.0000000000000000 0.0000000000000000 0.0000000000000000
0.0000000000000000 1.0000000000000000 1.0000000000000000 0.0000000000000000
1.0000000000000000 1.0000000000000000 1.0000000000000000 0.0000000000000000
1.0000000000000000 0.0000000000000000 1.0000000000000000 0.0000000000000000
0.0000000000000000 0.0000000000000000 1.0000000000000000 0.0000000000000000
0.0000000000000000 0.0000000000000000 0.0000000000000000 1.0000000000000000
1.0000000000000000 0.0000000000000000 0.0000000000000000 1.0000000000000000
1.0000000000000000 1.0000000000000000 0.0000000000000000 1.0000000000000000
0.0000000000000000 1.0000000000000000 0.0000000000000000 1.0000000000000000
0.0000000000000000 1.0000000000000000 1.0000000000000000 1.0000000000000000
1.0000000000000000 1.0000000000000000 1.0000000000000000 1.0000000000000000
1.0000000000000000 0.0000000000000000 1.0000000000000000 1.0000000000000000
0.0000000000000000 0.0000000000000000 1.0000000000000000 1.0000000000000000
+231
View File
@@ -0,0 +1,231 @@
MFEM mesh v1.0
dimension
4
elements
96
1 8 0 1 7 8 9
1 8 1 6 7 8 9
1 8 4 5 6 8 9
1 8 4 6 7 8 9
1 8 0 1 3 8 9
1 8 1 2 3 8 9
1 8 0 4 7 8 9
1 8 0 3 4 8 9
1 8 1 2 6 8 9
1 8 2 5 6 8 9
1 8 3 4 5 8 9
1 8 2 3 5 8 9
1 8 9 10 11 17 18
1 8 9 11 16 17 18
1 8 9 14 15 16 18
1 8 9 14 16 17 18
1 8 9 10 11 13 18
1 8 9 11 12 13 18
1 8 9 10 14 17 18
1 8 9 10 13 14 18
1 8 9 11 12 16 18
1 8 9 12 15 16 18
1 8 9 13 14 15 18
1 8 9 12 13 15 18
1 8 9 12 15 16 19
1 8 9 11 12 16 19
1 8 1 6 9 11 19
1 8 6 9 11 16 19
1 8 1 2 6 9 19
1 8 2 5 6 9 19
1 8 2 5 9 15 19
1 8 2 9 12 15 19
1 8 5 6 9 16 19
1 8 5 9 15 16 19
1 8 1 9 11 12 19
1 8 1 2 9 12 19
1 8 9 10 13 14 20
1 8 9 10 14 17 20
1 8 0 9 10 17 20
1 8 0 7 9 17 20
1 8 0 3 4 9 20
1 8 0 4 7 9 20
1 8 3 4 9 13 20
1 8 4 9 13 14 20
1 8 4 7 9 14 20
1 8 7 9 14 17 20
1 8 0 3 9 10 20
1 8 3 9 10 13 20
1 8 2 5 9 15 21
1 8 2 9 12 15 21
1 8 2 3 5 9 21
1 8 3 4 5 9 21
1 8 9 13 14 15 21
1 8 9 12 13 15 21
1 8 4 5 9 14 21
1 8 5 9 14 15 21
1 8 2 3 9 12 21
1 8 3 9 12 13 21
1 8 3 4 9 13 21
1 8 4 9 13 14 21
1 8 1 6 9 11 22
1 8 6 9 11 16 22
1 8 6 7 9 16 22
1 8 7 9 16 17 22
1 8 0 7 9 17 22
1 8 0 9 10 17 22
1 8 0 1 9 10 22
1 8 1 9 10 11 22
1 8 0 1 7 9 22
1 8 1 6 7 9 22
1 8 9 10 11 17 22
1 8 9 11 16 17 22
1 8 5 9 15 16 23
1 8 5 6 9 16 23
1 8 6 7 9 16 23
1 8 7 9 16 17 23
1 8 7 9 14 17 23
1 8 4 7 9 14 23
1 8 4 5 9 14 23
1 8 5 9 14 15 23
1 8 4 6 7 9 23
1 8 4 5 6 9 23
1 8 9 14 15 16 23
1 8 9 14 16 17 23
1 8 1 2 9 12 24
1 8 1 9 11 12 24
1 8 0 1 9 10 24
1 8 1 9 10 11 24
1 8 0 3 9 10 24
1 8 3 9 10 13 24
1 8 2 3 9 12 24
1 8 3 9 12 13 24
1 8 1 2 3 9 24
1 8 0 1 3 9 24
1 8 9 10 11 13 24
1 8 9 11 12 13 24
boundary
96
1 4 0 1 7 8
1 4 0 1 3 8
1 4 0 4 7 8
1 4 0 3 4 8
2 4 0 10 17 20
2 4 0 7 17 20
2 4 0 3 4 20
2 4 0 4 7 20
2 4 0 3 10 20
2 4 0 7 17 22
2 4 0 10 17 22
2 4 0 1 10 22
2 4 0 1 7 22
2 4 0 1 10 24
2 4 0 3 10 24
2 4 0 1 3 24
1 4 1 6 7 8
1 4 1 2 3 8
1 4 1 2 6 8
2 4 1 6 11 19
2 4 1 2 6 19
2 4 1 11 12 19
2 4 1 2 12 19
2 4 1 6 11 22
2 4 1 10 11 22
2 4 1 6 7 22
2 4 1 2 12 24
2 4 1 11 12 24
2 4 1 10 11 24
2 4 1 2 3 24
1 4 2 5 6 8
1 4 2 3 5 8
2 4 2 5 6 19
2 4 2 5 15 19
2 4 2 12 15 19
2 4 2 5 15 21
2 4 2 12 15 21
2 4 2 3 5 21
2 4 2 3 12 21
2 4 2 3 12 24
1 4 3 4 5 8
2 4 3 4 13 20
2 4 3 10 13 20
2 4 3 4 5 21
2 4 3 12 13 21
2 4 3 4 13 21
2 4 3 10 13 24
2 4 3 12 13 24
1 4 4 5 6 8
1 4 4 6 7 8
2 4 4 13 14 20
2 4 4 7 14 20
2 4 4 5 14 21
2 4 4 13 14 21
2 4 4 7 14 23
2 4 4 5 14 23
2 4 4 6 7 23
2 4 4 5 6 23
2 4 5 6 16 19
2 4 5 15 16 19
2 4 5 14 15 21
2 4 5 15 16 23
2 4 5 6 16 23
2 4 5 14 15 23
2 4 6 11 16 19
2 4 6 11 16 22
2 4 6 7 16 22
2 4 6 7 16 23
2 4 7 14 17 20
2 4 7 16 17 22
2 4 7 16 17 23
2 4 7 14 17 23
3 4 10 11 17 18
3 4 10 11 13 18
3 4 10 14 17 18
3 4 10 13 14 18
2 4 10 13 14 20
2 4 10 14 17 20
2 4 10 11 17 22
2 4 10 11 13 24
3 4 11 16 17 18
3 4 11 12 13 18
3 4 11 12 16 18
2 4 11 12 16 19
2 4 11 16 17 22
2 4 11 12 13 24
3 4 12 15 16 18
3 4 12 13 15 18
2 4 12 15 16 19
2 4 12 13 15 21
3 4 13 14 15 18
2 4 13 14 15 21
3 4 14 15 16 18
3 4 14 16 17 18
2 4 14 15 16 23
2 4 14 16 17 23
vertices
25
4
0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000
1.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000
1.0000000000000000 1.0000000000000000 0.0000000000000000 0.0000000000000000
0.0000000000000000 1.0000000000000000 0.0000000000000000 0.0000000000000000
0.0000000000000000 1.0000000000000000 1.0000000000000000 0.0000000000000000
1.0000000000000000 1.0000000000000000 1.0000000000000000 0.0000000000000000
1.0000000000000000 0.0000000000000000 1.0000000000000000 0.0000000000000000
0.0000000000000000 0.0000000000000000 1.0000000000000000 0.0000000000000000
0.5000000000000000 0.5000000000000000 0.5000000000000000 0.0000000000000000
0.5000000000000000 0.5000000000000000 0.5000000000000000 0.5000000000000000
0.0000000000000000 0.0000000000000000 0.0000000000000000 1.0000000000000000
1.0000000000000000 0.0000000000000000 0.0000000000000000 1.0000000000000000
1.0000000000000000 1.0000000000000000 0.0000000000000000 1.0000000000000000
0.0000000000000000 1.0000000000000000 0.0000000000000000 1.0000000000000000
0.0000000000000000 1.0000000000000000 1.0000000000000000 1.0000000000000000
1.0000000000000000 1.0000000000000000 1.0000000000000000 1.0000000000000000
1.0000000000000000 0.0000000000000000 1.0000000000000000 1.0000000000000000
0.0000000000000000 0.0000000000000000 1.0000000000000000 1.0000000000000000
0.5000000000000000 0.5000000000000000 0.5000000000000000 1.0000000000000000
1.0000000000000000 0.5000000000000000 0.5000000000000000 0.5000000000000000
0.0000000000000000 0.5000000000000000 0.5000000000000000 0.5000000000000000
0.5000000000000000 1.0000000000000000 0.5000000000000000 0.5000000000000000
0.5000000000000000 0.0000000000000000 0.5000000000000000 0.5000000000000000
0.5000000000000000 0.5000000000000000 1.0000000000000000 0.5000000000000000
0.5000000000000000 0.5000000000000000 0.0000000000000000 0.5000000000000000
+36
View File
@@ -0,0 +1,36 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
#
dimension
2
elements
2
1 2 2 0 1
1 2 0 2 3
boundary
4
1 1 0 1
1 1 1 2
2 1 2 3
1 1 3 0
vertices
4
2
0 0
1 0
1 1
0 1
+52
View File
@@ -0,0 +1,52 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
#
dimension
3
elements
6
1 4 3 1 7 5
1 4 1 6 7 4
1 4 6 1 0 2
1 4 1 6 4 2
1 4 6 1 3 0
1 4 1 6 3 7
boundary
12
1 2 6 0 3
1 2 0 6 2
1 2 1 3 0
1 2 3 1 5
1 2 3 7 6
1 2 7 3 5
1 2 4 6 7
1 2 6 4 2
2 2 1 7 5
2 2 7 1 4
1 2 1 2 4
1 2 2 1 0
vertices
8
3
0 0 0
0 0 1
1 0 0
0 1 0
1 0 1
0 1 1
1 1 0
1 1 1
+2 -2
View File
@@ -1208,13 +1208,13 @@ STRIP_CODE_COMMENTS = NO
# entity all documented functions referencing it will be listed.
# The default value is: NO.
REFERENCED_BY_RELATION = NO
REFERENCED_BY_RELATION = YES
# If the REFERENCES_RELATION tag is set to YES then for each documented function
# all documented entities called/used by that function will be listed.
# The default value is: NO.
REFERENCES_RELATION = NO
REFERENCES_RELATION = YES
# If the REFERENCES_LINK_SOURCE tag is set to YES and SOURCE_BROWSER tag is set
# to YES then the hyperlinks from functions in REFERENCES_RELATION and
+3
View File
@@ -73,6 +73,9 @@ if (MFEM_USE_MPI)
ex20p.cpp
ex21p.cpp
ex22p.cpp
ex1p_4d.cpp
ex3p_4d.cpp
ex4D_DivSkew.cpp
ex24p.cpp
ex25p.cpp
ex26p.cpp
+27 -9
View File
@@ -20,6 +20,7 @@
// ex14 -m ../data/fichera-amr.mesh
// ex14 -pa -r 1 -o 3
// ex14 -pa -r 1 -o 3 -m ../data/fichera.mesh
// ex14 -m ../data/inline-tet.mesh -o 0 -nt 4 -s 1
//
// Device sample runs:
// ex14 -pa -r 2 -d cuda -o 3
@@ -55,10 +56,16 @@ int main(int argc, char *argv[])
bool pa = false;
bool visualization = 1;
const char *device_config = "cpu";
int nt = 0;
double st = 1.0;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&nt, "-nt", "--number-of-timeslices",
"Number of slices through the hyper-prism in the 4th coordinate.");
args.AddOption(&st, "-st", "--size-time",
"Length of hyper-prims in 4th coordinate (e.g. time).");
args.AddOption(&ref_levels, "-r", "--refine",
"Number of times to refine the mesh uniformly, -1 for auto.");
args.AddOption(&order, "-o", "--order",
@@ -97,8 +104,17 @@ int main(int argc, char *argv[])
// 3. Read the mesh from the given mesh file. We can handle triangular,
// quadrilateral, tetrahedral and hexahedral meshes with the same code.
// NURBS meshes are projected to second order meshes.
Mesh mesh(mesh_file);
const int dim = mesh.Dimension();
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
if (dim == 3 && nt > 0)
{
Mesh* spat_mesh = mesh;
mesh = new Mesh(spat_mesh, nt, Element::PENTATOPE, true, st);
delete spat_mesh;
ref_levels = 0;
dim = 4;
}
// 4. Refine the mesh to increase the resolution. In this example we do
// 'ref_levels' of uniform refinement. By default, or if ref_levels < 0,
@@ -107,23 +123,23 @@ int main(int argc, char *argv[])
{
if (ref_levels < 0)
{
ref_levels = (int)floor(log(50000./mesh.GetNE())/log(2.)/dim);
ref_levels = (int)floor(log(50000./mesh->GetNE())/log(2.)/(dim < 4 ? dim : 1.));
}
for (int l = 0; l < ref_levels; l++)
{
mesh.UniformRefinement();
mesh->UniformRefinement();
}
}
if (mesh.NURBSext)
if (mesh->NURBSext)
{
mesh.SetCurvature(max(order, 1));
mesh->SetCurvature(max(order, 1));
}
// 5. Define a finite element space on the mesh. Here we use discontinuous
// finite elements of the specified order >= 0.
const auto bt = pa ? BasisType::GaussLobatto : BasisType::GaussLegendre;
DG_FECollection fec(order, dim, bt);
FiniteElementSpace fespace(&mesh, &fec);
FiniteElementSpace fespace(mesh, &fec);
cout << "Number of unknowns: " << fespace.GetVSize() << endl;
// 6. Set up the linear form b(.) which corresponds to the right-hand side of
@@ -198,7 +214,7 @@ int main(int argc, char *argv[])
// later using GLVis: "glvis -m refined.mesh -g sol.gf".
ofstream mesh_ofs("refined.mesh");
mesh_ofs.precision(8);
mesh.Print(mesh_ofs);
mesh->Print(mesh_ofs);
ofstream sol_ofs("sol.gf");
sol_ofs.precision(8);
x.Save(sol_ofs);
@@ -210,8 +226,10 @@ int main(int argc, char *argv[])
int visport = 19916;
socketstream sol_sock(vishost, visport);
sol_sock.precision(8);
sol_sock << "solution\n" << mesh << x << flush;
sol_sock << "solution\n" << *mesh << x << flush;
}
delete mesh;
return 0;
}
+24 -8
View File
@@ -19,6 +19,7 @@
// mpirun -np 4 ex14p -m ../data/amr-hex.mesh
// mpirun -np 4 ex14p -pa -rs 1 -rp 0 -o 3
// mpirun -np 4 ex14p -pa -rs 1 -rp 0 -m ../data/fichera.mesh -o 3
// mpirun -np 4 ex14p -m ../data/inline-tet.mesh -o 0 -nt 4 -s 1
//
// Device sample runs:
// mpirun -np 4 ex14p -pa -rs 2 -rp 0 -d cuda -o 3
@@ -90,10 +91,16 @@ int main(int argc, char *argv[])
bool pa = false;
bool visualization = 1;
const char *device_config = "cpu";
int nt = 0;
double st = 1.0;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&nt, "-nt", "--number-of-timeslices",
"Number of slices through the hyper-prism in the 4th coordinate.");
args.AddOption(&st, "-st", "--size-time",
"Length of hyper-prims in 4th coordinate (e.g. time).");
args.AddOption(&ser_ref_levels, "-rs", "--refine-serial",
"Number of times to refine the mesh uniformly in serial,"
" -1 for auto.");
@@ -139,8 +146,17 @@ int main(int argc, char *argv[])
// 3. Read the (serial) mesh from the given mesh file on all processors. We
// can handle triangular, quadrilateral, tetrahedral and hexahedral meshes
// with the same code. NURBS meshes are projected to second order meshes.
Mesh mesh(mesh_file);
int dim = mesh.Dimension();
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
if (dim == 3 && nt > 0)
{
Mesh* spat_mesh = mesh;
mesh = new Mesh(spat_mesh, nt, Element::PENTATOPE, true, st);
delete spat_mesh;
dim = 4;
}
if (dim == 4)
ser_ref_levels = 0;
// 4. Refine the serial mesh on all processors to increase the resolution. In
// this example we do 'ser_ref_levels' of uniform refinement. By default,
@@ -149,23 +165,23 @@ int main(int argc, char *argv[])
{
if (ser_ref_levels < 0)
{
ser_ref_levels = (int)floor(log(10000./mesh.GetNE())/log(2.)/dim);
ser_ref_levels = (int)floor(log(10000./mesh->GetNE())/log(2.)/dim);
}
for (int l = 0; l < ser_ref_levels; l++)
{
mesh.UniformRefinement();
mesh->UniformRefinement();
}
}
if (mesh.NURBSext)
if (mesh->NURBSext)
{
mesh.SetCurvature(max(order, 1));
mesh->SetCurvature(max(order, 1));
}
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted.
ParMesh pmesh(MPI_COMM_WORLD, mesh);
mesh.Clear();
ParMesh pmesh(MPI_COMM_WORLD, *mesh);
delete mesh;
{
for (int l = 0; l < par_ref_levels; l++)
{
+412
View File
@@ -0,0 +1,412 @@
// MFEM Example 1 - Parallel Version
//
// Compile with: make ex1p
//
// Sample runs: mpirun -np 4 ex1p -m ../data/square-disc.mesh
// mpirun -np 4 ex1p -m ../data/star.mesh
// mpirun -np 4 ex1p -m ../data/escher.mesh
// mpirun -np 4 ex1p -m ../data/fichera.mesh
// mpirun -np 4 ex1p -m ../data/square-disc-p2.vtk -o 2
// mpirun -np 4 ex1p -m ../data/square-disc-p3.mesh -o 3
// mpirun -np 4 ex1p -m ../data/square-disc-nurbs.mesh -o -1
// mpirun -np 4 ex1p -m ../data/disc-nurbs.mesh -o -1
// mpirun -np 4 ex1p -m ../data/pipe-nurbs.mesh -o -1
// mpirun -np 4 ex1p -m ../data/ball-nurbs.mesh -o 2
// mpirun -np 4 ex1p -m ../data/star-surf.mesh
// mpirun -np 4 ex1p -m ../data/square-disc-surf.mesh
// mpirun -np 4 ex1p -m ../data/inline-segment.mesh
// mpirun -np 4 ex1p -m ../data/amr-quad.mesh
// mpirun -np 4 ex1p -m ../data/amr-hex.mesh
// mpirun -np 4 ex1p -m ../data/mobius-strip.mesh
// mpirun -np 4 ex1p -m ../data/mobius-strip.mesh -o -1 -sc
//
// Description: This example code demonstrates the use of MFEM to define a
// simple finite element discretization of the Laplace problem
// -Delta u = 1 with homogeneous Dirichlet boundary conditions.
// Specifically, we discretize using a FE space of the specified
// order, or if order < 1 using an isoparametric/isogeometric
// space (i.e. quadratic for quadratic curvilinear mesh, NURBS for
// NURBS mesh, etc.)
//
// The example highlights the use of mesh refinement, finite
// element grid functions, as well as linear and bilinear forms
// corresponding to the left-hand side and right-hand side of the
// discrete linear system. We also cover the explicit elimination
// of essential boundary conditions, static condensation, and the
// optional connection to the GLVis tool for visualization.
#include "mfem.hpp"
#include <fstream>
#include <iostream>
#include "./spe10_coeff.cpp"
int* LoadIterations(int NRows, int NCol)
{
ifstream in("iter_grad.txt");
//initialize
int *iters = new int[NCol*NRows];
for (int col = 0; col < NCol; col++)
{
for (int row = 0; row < NRows; row++)
{
iters[row*NCol+col] = -1;
}
}
if (!in)
{
cout << "Cannot open file.\n";
return iters;
}
for (int row = 0; row < NRows; row++)
for (int col = 0; col < NCol; col++)
{
if (in.eof())
{
in.close();
return iters;
}
in >> iters[row*NCol+col];
}
in.close();
return iters;
}
void putIterationsInArray(int iter, int row, int col, int NCol, int* iters)
{
iters[row*NCol+col] = iter;
}
void WriteIterations(int *iters, int NRows, int NCol)
{
ofstream out;
out.open("iter_grad.txt",fstream::out);
if (!out)
{
cout << "Cannot open file.\n";
delete[] iters;
return;
}
for (int row = 0; row < NRows; row++)
{
for (int col = 0; col < NCol; col++)
{
out << iters[row*NCol+col] << "\t";
}
out << endl;
}
out.close();
delete[] iters;
}
using namespace std;
using namespace mfem;
double kappa = 1.0;
double u_exact(const Vector &x)
{
int dim = x.Size();
if (dim==4)
{
return cos(M_PI*x(0))*cos(M_PI*x(1))*cos(M_PI*x(2))*cos(M_PI*x(3));
}
else { return 0.0; }
}
double f_exact(const Vector &x)
{
int dim = x.Size();
if (dim==4)
{
return (kappa + 4.0 * M_PI*M_PI) * cos(M_PI*x(0))*cos(M_PI*x(1))*cos(M_PI*x(
2))*cos(M_PI*x(3));
}
else { return 0.0; }
}
int main(int argc, char *argv[])
{
// 1. Initialize MPI.
int num_procs, myid;
MPI_Init(&argc, &argv);
MPI_Comm_size(MPI_COMM_WORLD, &num_procs);
MPI_Comm_rank(MPI_COMM_WORLD, &myid);
bool verbose = (myid==0);
// 2. Parse command-line options.
const char *mesh_file = "../data/cube4d_96.MFEM";
int order = 1;
bool static_cond = false;
bool visualization = 1;
int sequ_ref_levels = 0;
int par_ref_levels = 0;
double tol = 1e-6;
bool set_bc = true;
bool standardCG = true;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&sequ_ref_levels, "-sr", "--seqrefinement",
"Number of sequential refinement steps.");
args.AddOption(&par_ref_levels, "-pr", "--parrefinement",
"Number of parallel refinement steps.");
args.AddOption(&order, "-o", "--order",
"Polynomial order of the finite element space.");
args.AddOption(&tol, "-tol", "--tol",
"A parameter.");
args.AddOption(&set_bc, "-bc", "--impose-bc", "-no-bc", "--dont-impose-bc",
"Impose or not essential boundary conditions.");
args.AddOption(&standardCG, "-sCG", "--stdCG", "-rCG", "--resCG",
"Switch between standard PCG or recompute residuals in every step and use the residuals itself for the stopping criteria.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
if (verbose) { args.PrintOptions(cout); }
Mesh *mesh;
ifstream imesh(mesh_file);
if (!imesh)
{
cerr << "\nCan not open mesh file: " << mesh_file << '\n' << endl;
return 2;
}
mesh = new Mesh(imesh, 1, 1);
imesh.close();
int dim = mesh->Dimension();
int sdim = mesh->SpaceDimension();
// if(dim !=4 || sdim != 4)
// {
// MPI_Finalize();
// return 0;
// }
for (int i=0; i<sequ_ref_levels; i++) { mesh->UniformRefinement(); }
if (verbose) { mesh->PrintCharacteristics(); }
if (verbose) { cout << "now we partition the mesh..." << endl << endl; }
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
delete mesh;
for (int i=0; i<par_ref_levels; i++) { pmesh->UniformRefinement(); }
pmesh->PrintInfo(std::cout);
if (verbose) { cout << endl; }
// 6. Define a parallel finite element space on the parallel mesh. Here we
// use continuous Lagrange finite elements of the specified order. If
// order < 1, we instead use an isoparametric/isogeometric space.
FiniteElementCollection *fec;
if (order > 0)
{
if (dim==4)
{
if (order==1) { fec = new LinearFECollection; }
else { fec = new QuadraticFECollection; }
}
else { fec = new H1_FECollection(order, dim); }
}
else if (pmesh->GetNodes())
{
fec = pmesh->GetNodes()->OwnFEC();
if (myid == 0)
{
cout << "Using isoparametric FEs: " << fec->Name() << endl;
}
}
else
{
fec = new H1_FECollection(order = 1, dim);
}
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
HYPRE_Int size = fespace->GlobalTrueVSize();
if (myid == 0)
{
cout << "Number of finite element unknowns: " << size << endl;
}
// 7. Determine the list of true (i.e. parallel conforming) essential
// boundary dofs. In this example, the boundary conditions are defined
// by marking all the boundary attributes from the mesh as essential
// (Dirichlet) and converting them to a list of true dofs.
Array<int> ess_tdof_list;
if (pmesh->bdr_attributes.Size())
{
Array<int> ess_bdr(pmesh->bdr_attributes.Max());
ess_bdr = set_bc ? 1 : 0;
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
FunctionCoefficient uExact(u_exact);
ParGridFunction x(fespace);
int NExpo =8;
for (int expo=-NExpo; expo<=NExpo; expo++)
{
double weight = pow(10.0,expo);
kappa = weight;
x.ProjectCoefficient(uExact);
ParLinearForm *b = new ParLinearForm(fespace);
FunctionCoefficient ffunc(f_exact);
b->AddDomainIntegrator(new DomainLFIntegrator(ffunc));
b->Assemble();
x = 0.0;
// 10. Set up the parallel bilinear form a(.,.) on the finite element space
// corresponding to the Laplacian operator -Delta, by adding the Diffusion
// domain integrator.
// std::string permFile = "spe_perm.dat";
// InversePermeabilityFunction::ReadPermeabilityFile(permFile, MPI_COMM_WORLD);
// FunctionCoefficient *cspe10 = new FunctionCoefficient(InversePermeabilityFunction::Norm2Permeability);
Coefficient *beta = new ConstantCoefficient(weight);
ParBilinearForm *a = new ParBilinearForm(fespace);
a->AddDomainIntegrator(new DiffusionIntegrator);
a->AddDomainIntegrator(new MassIntegrator(*beta));
// 11. Assemble the parallel bilinear form and the corresponding linear
// system, applying any necessary transformations such as: parallel
// assembly, eliminating boundary conditions, applying conforming
// constraints for non-conforming AMR, static condensation, etc.
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
HypreParMatrix A;
Vector B, X;
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
if (myid == 0)
{
cout << "Size of linear system: " << A.GetGlobalNumRows() << endl;
}
// 12. Define and apply a parallel PCG solver for AX=B with the BoomerAMG
// preconditioner from hypre.
HypreSolver *amg = new HypreBoomerAMG(A);
int iter = -1;
if (standardCG)
{
IterativeSolver *pcg = new CGSolver(MPI_COMM_WORLD);
pcg->SetOperator(A);
pcg->SetRelTol(tol);
pcg->SetMaxIter(5000);
pcg->SetPrintLevel(1);
pcg->SetPreconditioner(*amg);
pcg->Mult(B, X);
iter = pcg->GetNumIterations();
delete pcg;
}
else
{
HyprePCG *pcg = new HyprePCG(A);
pcg->SetTol(tol);
pcg->SetMaxIter(5000);
pcg->SetResidualConvergenceOptions(1,tol);
pcg->SetPrintLevel(2);
pcg->SetPreconditioner(*amg);
pcg->Mult(B, X);
pcg->GetNumIterations(iter);
delete pcg;
}
if (myid==0)
{
cout << "Weigth: " << weight << " " << iter << endl;
int *iters = LoadIterations(10, 2*NExpo+1);
putIterationsInArray(iter, sequ_ref_levels+par_ref_levels, expo+NExpo,
2*NExpo+1, iters);
WriteIterations(iters, 10, 2*NExpo+1);
}
// 13. Recover the parallel grid function corresponding to X. This is the
// local finite element solution on each processor.
a->RecoverFEMSolution(X, *b, x);
{
double err = x.ComputeL2Error(uExact);
if (myid == 0)
{
cout << "\n|| u - u_h ||_{L^2} = " << err << '\n' << endl;
}
}
// 14. Save the refined mesh and the solution in parallel. This output can
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
// {
// ostringstream mesh_name, sol_name;
// mesh_name << "mesh." << setfill('0') << setw(6) << myid;
// sol_name << "sol." << setfill('0') << setw(6) << myid;
//
// ofstream mesh_ofs(mesh_name.str().c_str());
// mesh_ofs.precision(8);
// pmesh->Print(mesh_ofs);
//
// ofstream sol_ofs(sol_name.str().c_str());
// sol_ofs.precision(8);
// x.Save(sol_ofs);
// }
// 15. Send the solution by socket to a GLVis server.
// if (visualization)
// {
// char vishost[] = "localhost";
// int visport = 19916;
// socketstream sol_sock(vishost, visport);
// sol_sock << "parallel " << num_procs << " " << myid << "\n";
// sol_sock.precision(8);
// sol_sock << "solution\n" << *pmesh << x << flush;
// }
delete amg;
delete a;
delete beta;
delete b;
}
// 16. Free the used memory.
delete fespace;
if (order > 0) { delete fec; }
delete pmesh;
MPI_Finalize();
return 0;
}
+222 -9
View File
@@ -58,6 +58,180 @@ void f_exact(const Vector &, Vector &);
real_t freq = 1.0, kappa;
int dim;
class Curl4dPrec : public Solver
{
private:
HypreParMatrix *A;
ParFiniteElementSpace *fespace;
HypreParMatrix *idMat;
HypreParMatrix *H1VecLaplaceMat;
HypreBoomerAMG *amgVecH1;
HypreParMatrix *gradMat;
HypreParMatrix *H1LaplaceMat;
HypreBoomerAMG *amgH1;
HypreSmoother * smoother;
CGSolver *pcgGrad;
CGSolver *pcgH1Vec;
Vector *f;
Vector *fGrad, *uGrad;
Vector *fH1Vec, *uH1Vec;
bool exactSolves;
public:
Curl4dPrec(HypreParMatrix *AUser, ParFiniteElementSpace *fespaceUser,
const Array<int> &essBnd, int orderKernel=1, bool exactSolvesUser=false)
{
A = AUser;
fespace = fespaceUser;
ParMesh *pmesh = fespace->GetParMesh();
int dim = pmesh->Dimension();
exactSolves = exactSolvesUser;
int orderIm=1; //vecH1 --> H(curl)
int orderKer=orderKernel; //grad V --> H(curl)
smoother = new HypreSmoother(*A, 16, 3);
// //for the pure dirichlet case
// Array<int> essBnd(pmesh->bdr_attributes.Max()); essBnd = 1;
Array<int> HCurl_essDof(fespace->GetVSize()); HCurl_essDof = 0;
fespace->GetEssentialVDofs(essBnd, HCurl_essDof);
//setup the H1 FESpace
FiniteElementCollection* fecH1;
if (orderKer==1) { fecH1 = new LinearFECollection; }
else { fecH1 = new QuadraticFECollection; }
ParFiniteElementSpace *H1FESpace = new ParFiniteElementSpace(pmesh, fecH1);
Array<int> H1_essDof(H1FESpace->GetVSize()); H1_essDof = 0;
H1FESpace->GetEssentialVDofs(essBnd, H1_essDof);
//setup the discrete gradient
ParDiscreteLinearOperator *disGrad = new ParDiscreteLinearOperator(H1FESpace,
fespace);
disGrad->AddDomainInterpolator(new GradientInterpolator);
disGrad->Assemble();
disGrad->Finalize();
SparseMatrix* smat = &(disGrad->SpMat());
smat->EliminateCols(H1_essDof);
for (int dof=0; dof<HCurl_essDof.Size(); dof++) if (HCurl_essDof[dof]<0) { smat->EliminateRow(dof); }
gradMat = disGrad->ParallelAssemble();
delete disGrad;
//setup the H1 preconditioner
ParBilinearForm* H1Varf = new ParBilinearForm(H1FESpace);
H1Varf->AddDomainIntegrator(new DiffusionIntegrator);
H1Varf->AddDomainIntegrator(new MassIntegrator);
H1Varf->Assemble();
H1Varf->Finalize();
SparseMatrix &matH1(H1Varf->SpMat());
for (int dof=0; dof<H1_essDof.Size(); dof++) if (H1_essDof[dof]<0) { matH1.EliminateRowCol(dof); }
H1LaplaceMat = H1Varf->ParallelAssemble();
delete H1Varf;
amgH1 = new HypreBoomerAMG(*H1LaplaceMat);
//setup the H1 injection
FiniteElementCollection* fecH1Vec;
if (orderIm==1) { fecH1Vec = new LinearFECollection; }
else { fecH1Vec = new QuadraticFECollection; }
ParFiniteElementSpace *H1VecFESpace = new ParFiniteElementSpace(pmesh, fecH1Vec,
dim, Ordering::byVDIM);
Array<int> H1Vec_essDof(H1VecFESpace->GetVSize()); H1Vec_essDof = 0;
H1VecFESpace->GetEssentialVDofs(essBnd, H1Vec_essDof);
//setup the discrete gradient
ParDiscreteLinearOperator *disInterpol = new ParDiscreteLinearOperator(
H1VecFESpace, fespace);
disInterpol->AddDomainInterpolator(new IdentityInterpolator);
disInterpol->Assemble();
disInterpol->Finalize();
SparseMatrix* smatID = &(disInterpol->SpMat());
smatID->EliminateCols(H1Vec_essDof);
for (int dof=0; dof<HCurl_essDof.Size(); dof++) if (HCurl_essDof[dof]<0) { smatID->EliminateRow(dof); }
idMat = disInterpol->ParallelAssemble();
delete disInterpol;
//setup the H1-vec preconditioner
ParBilinearForm* H1VecVarf = new ParBilinearForm(H1VecFESpace);
H1VecVarf->AddDomainIntegrator(new VectorDiffusionIntegrator);
H1VecVarf->AddDomainIntegrator(new VectorMassIntegrator);
H1VecVarf->Assemble();
H1VecVarf->Finalize();
SparseMatrix &matH1Vec(H1VecVarf->SpMat());
for (int dof=0; dof<H1Vec_essDof.Size(); dof++) if (H1Vec_essDof[dof]<0) { matH1Vec.EliminateRowCol(dof); }
H1VecLaplaceMat = H1VecVarf->ParallelAssemble();
delete H1VecVarf;
amgVecH1 = new HypreBoomerAMG(*H1VecLaplaceMat);
amgVecH1->SetSystemsOptions(dim);
f = new Vector(fespace->GetTrueVSize());
fGrad = new Vector(H1FESpace->GetTrueVSize());
uGrad = new Vector(H1FESpace->GetTrueVSize());
fH1Vec = new Vector(H1VecFESpace->GetTrueVSize());
uH1Vec = new Vector(H1VecFESpace->GetTrueVSize());;
amgH1->Mult(*fGrad, *uGrad);
amgVecH1->Mult(*fH1Vec, *uH1Vec);
pcgGrad = new CGSolver(MPI_COMM_WORLD);
pcgGrad->SetOperator(*H1LaplaceMat);
pcgGrad->SetPreconditioner(*amgH1);
pcgGrad->SetRelTol(1e-16);
pcgGrad->SetMaxIter(100000000);
pcgGrad->SetPrintLevel(-2);
pcgH1Vec = new CGSolver(MPI_COMM_WORLD);
pcgH1Vec->SetOperator(*H1VecLaplaceMat);
pcgH1Vec->SetPreconditioner(*amgVecH1);
pcgH1Vec->SetRelTol(1e-16);
pcgH1Vec->SetMaxIter(100000000);
pcgH1Vec->SetPrintLevel(-2);
}
void setExactSolve(bool exSol)
{
exactSolves = exSol;
}
virtual void Mult(const Vector &x, Vector &y) const
{
smoother->Mult(x,y);
idMat->MultTranspose(x,*fH1Vec);
*uH1Vec = 0.0;
if (exactSolves) { pcgH1Vec->Mult(*fH1Vec, *uH1Vec); }
else { amgVecH1->Mult(*fH1Vec, *uH1Vec); }
idMat->Mult(1.0, *uH1Vec, 1.0, y);
gradMat->MultTranspose(x,*fGrad);
*uGrad = 0.0;
if (exactSolves) { pcgGrad->Mult(*fGrad, *uGrad); }
else { amgH1->Mult(*fGrad, *uGrad); }
gradMat->Mult(1.0, *uGrad, 1.0, y);
}
virtual void SetOperator(const Operator &op) {};
};
int main(int argc, char *argv[])
{
// 1. Initialize MPI and HYPRE.
@@ -162,7 +336,13 @@ int main(int argc, char *argv[])
// 7. Define a parallel finite element space on the parallel mesh. Here we
// use the Nedelec finite elements of the specified order.
FiniteElementCollection *fec = new ND_FECollection(order, dim);
FiniteElementCollection *fec;
if (dim==4)
{
if (order==1) { fec = new ND1_4DFECollection; }
else { fec = new ND2_4DFECollection; }
}
else { fec = new ND_FECollection(order, dim); }
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
HYPRE_BigInt size = fespace->GlobalTrueVSize();
if (myid == 0)
@@ -248,15 +428,29 @@ int main(int argc, char *argv[])
ParFiniteElementSpace *prec_fespace =
(a->StaticCondensationIsEnabled() ? a->SCParFESpace() : fespace);
Solver *prec;
HypreAMS ams(*A.As<HypreParMatrix>(), prec_fespace);
HyprePCG pcg(*A.As<HypreParMatrix>());
pcg.SetTol(1e-12);
pcg.SetMaxIter(500);
pcg.SetPrintLevel(2);
pcg.SetPreconditioner(ams);
pcg.Mult(B, X);
if (dim <= 3)
{
prec = new HypreAMS(*A.As<HypreParMatrix>(), prec_fespace);
}
else if (dim == 4)
{
prec = new Curl4dPrec(A.As<HypreParMatrix>(), fespace, ess_bdr, order, false);
}
IterativeSolver *pcg = new CGSolver(MPI_COMM_WORLD);
pcg->SetOperator(*A.As<HypreParMatrix>());
pcg->SetTol(1e-12);
pcg->SetMaxIter(500);
pcg->SetPrintLevel(2);
pcg->SetPreconditioner(*prec);
pcg->Mult(B, X);
delete pcg;
delete prec;
}
// 13. Recover the parallel grid function corresponding to X. This is the
// 14. Recover the parallel grid function corresponding to X. This is the
// local finite element solution on each processor.
a->RecoverFEMSolution(X, *b, x);
@@ -312,7 +506,14 @@ int main(int argc, char *argv[])
void E_exact(const Vector &x, Vector &E)
{
if (dim == 3)
if (dim==4)
{
E(0) = sin(M_PI*x(0))*cos(M_PI*x(1))*cos(M_PI*x(2))*cos(M_PI*x(3));
E(1) = -cos(M_PI*x(0))*sin(M_PI*x(1))*cos(M_PI*x(2))*cos(M_PI*x(3));
E(2) = cos(M_PI*x(0))*cos(M_PI*x(1))*sin(M_PI*x(2))*cos(M_PI*x(3));
E(3) = -cos(M_PI*x(0))*cos(M_PI*x(1))*cos(M_PI*x(2))*sin(M_PI*x(3));
}
else if (dim == 3)
{
E(0) = sin(kappa * x(1));
E(1) = sin(kappa * x(2));
@@ -328,7 +529,19 @@ void E_exact(const Vector &x, Vector &E)
void f_exact(const Vector &x, Vector &f)
{
if (dim == 3)
//f_exact = E + DivSkew P( curl E ), where P is the 4d permutation operator
if (dim==4)
{
f(0) = (1.0+4.0*M_PI*M_PI)*sin(M_PI*x(0))*cos(M_PI*x(1))*cos(M_PI*x(2))*cos(
M_PI*x(3));
f(1) = -(1.0+4.0*M_PI*M_PI)*cos(M_PI*x(0))*sin(M_PI*x(1))*cos(M_PI*x(2))*cos(
M_PI*x(3));
f(2) = (1.0+4.0*M_PI*M_PI)*cos(M_PI*x(0))*cos(M_PI*x(1))*sin(M_PI*x(2))*cos(
M_PI*x(3));
f(3) = -(1.0+4.0*M_PI*M_PI)*cos(M_PI*x(0))*cos(M_PI*x(1))*cos(M_PI*x(2))*sin(
M_PI*x(3));
}
else if (dim == 3)
{
f(0) = (1. + kappa * kappa) * sin(kappa * x(1));
f(1) = (1. + kappa * kappa) * sin(kappa * x(2));
+650
View File
@@ -0,0 +1,650 @@
// MFEM Example 3 - Parallel Version
//
// Compile with: make ex3p
//
// Sample runs: mpirun -np 4 ex3p -m ../data/star.mesh
// mpirun -np 4 ex3p -m ../data/square-disc.mesh -o 2
// mpirun -np 4 ex3p -m ../data/beam-tet.mesh
// mpirun -np 4 ex3p -m ../data/beam-hex.mesh
// mpirun -np 4 ex3p -m ../data/escher.mesh
// mpirun -np 4 ex3p -m ../data/fichera.mesh
// mpirun -np 4 ex3p -m ../data/fichera-q2.vtk
// mpirun -np 4 ex3p -m ../data/fichera-q3.mesh
// mpirun -np 4 ex3p -m ../data/square-disc-nurbs.mesh
// mpirun -np 4 ex3p -m ../data/beam-hex-nurbs.mesh
// mpirun -np 4 ex3p -m ../data/amr-quad.mesh -o 2
// mpirun -np 4 ex3p -m ../data/amr-hex.mesh
// mpirun -np 4 ex3p -m ../data/star-surf.mesh -o 2
// mpirun -np 4 ex3p -m ../data/mobius-strip.mesh -o 2 -f 0.1
// mpirun -np 4 ex3p -m ../data/klein-bottle.mesh -o 2 -f 0.1
//
// Description: This example code solves a simple electromagnetic diffusion
// problem corresponding to the second order definite Maxwell
// equation curl curl E + E = f with boundary condition
// E x n = <given tangential field>. Here, we use a given exact
// solution E and compute the corresponding r.h.s. f.
// We discretize with Nedelec finite elements in 2D or 3D.
//
// The example demonstrates the use of H(curl) finite element
// spaces with the curl-curl and the (vector finite element) mass
// bilinear form, as well as the computation of discretization
// error when the exact solution is known. Static condensation is
// also illustrated.
//
// We recommend viewing examples 1-2 before viewing this example.
#include "mfem.hpp"
#include <fstream>
#include <iostream>
#include "./spe10_coeff.cpp"
using namespace std;
using namespace mfem;
int* LoadIterations(int NRows, int NCol)
{
ifstream in("iter_curl.txt");
//initialize
int *iters = new int[NCol*NRows];
for (int col = 0; col < NCol; col++)
{
for (int row = 0; row < NRows; row++)
{
iters[row*NCol+col] = -1;
}
}
if (!in)
{
cout << "Cannot open file.\n";
return iters;
}
for (int row = 0; row < NRows; row++)
for (int col = 0; col < NCol; col++)
{
if (in.eof())
{
in.close();
return iters;
}
in >> iters[row*NCol+col];
}
in.close();
return iters;
}
void putIterationsInArray(int iter, int row, int col, int NCol, int* iters)
{
iters[row*NCol+col] = iter;
}
void WriteIterations(int *iters, int NRows, int NCol)
{
ofstream out;
out.open("iter_curl.txt",fstream::out);
if (!out)
{
cout << "Cannot open file.\n";
delete[] iters;
return;
}
for (int row = 0; row < NRows; row++)
{
for (int col = 0; col < NCol; col++)
{
out << iters[row*NCol+col] << "\t";
}
out << endl;
}
out.close();
delete[] iters;
}
// Exact solution, E, and r.h.s., f. See below for implementation.
void E_exact(const Vector &, Vector &);
void f_exact(const Vector &, Vector &);
double freq = 1.0, kappa = 1.0;
int dim;
double osziCoeff(const Vector &x)
{
return 1.0001 + sin(100*x(0))*sin(200*x(1))*sin(300*x(2))*sin(400*x(3));
}
class Curl4dPrec : public Solver
{
private:
HypreParMatrix *A;
ParFiniteElementSpace *fespace;
Coefficient *alpha_, *beta_, *neg_beta_;
HypreParMatrix *idMat;
HypreParMatrix *H1VecLaplaceMat;
HypreBoomerAMG *amgVecH1;
HypreParMatrix *gradMat;
HypreParMatrix *H1LaplaceMat;
HypreBoomerAMG *amgH1;
HypreSmoother * smoother;
CGSolver *pcgGrad;
CGSolver *pcgH1Vec;
Vector *f;
Vector *fGrad, *uGrad;
Vector *fH1Vec, *uH1Vec;
bool exactSolves;
public:
~Curl4dPrec()
{
delete pcgH1Vec;
delete pcgGrad;
delete f, fGrad, uGrad, fH1Vec, uH1Vec;
delete smoother;
delete amgVecH1, H1VecLaplaceMat;
delete idMat;
delete amgH1, H1LaplaceMat;
delete gradMat;
}
Curl4dPrec(HypreParMatrix *AUser, ParFiniteElementSpace *fespaceUser,
Coefficient *alpha, Coefficient *beta, Coefficient *neg_beta,
const Array<int> &essBnd, int orderKernel=1, bool exactSolvesUser=false)
{
A = AUser;
fespace = fespaceUser;
alpha_ = alpha;
beta_ = beta;
neg_beta_=neg_beta;
ParMesh *pmesh = fespace->GetParMesh();
int dim = pmesh->Dimension();
exactSolves = exactSolvesUser;
int orderIm=1; //vecH1 --> H(curl)
int orderKer=orderKernel; //grad V --> H(curl)
smoother = new HypreSmoother(*A, 16, 3);
// //for the pure dirichlet case
// Array<int> essBnd(pmesh->bdr_attributes.Max()); essBnd = 1;
Array<int> HCurl_essDof(fespace->GetVSize()); HCurl_essDof = 0;
fespace->GetEssentialVDofs(essBnd, HCurl_essDof);
//setup the H1 FESpace
FiniteElementCollection* fecH1;
if (orderKer==1) { fecH1 = new LinearFECollection; }
else { fecH1 = new QuadraticFECollection; }
ParFiniteElementSpace *H1FESpace = new ParFiniteElementSpace(pmesh, fecH1);
Array<int> H1_essDof(H1FESpace->GetVSize()); H1_essDof = 0;
H1FESpace->GetEssentialVDofs(essBnd, H1_essDof);
//setup the discrete gradient
ParDiscreteLinearOperator *disGrad = new ParDiscreteLinearOperator(H1FESpace,
fespace);
disGrad->AddDomainInterpolator(new GradientInterpolator);
disGrad->Assemble();
disGrad->Finalize();
SparseMatrix* smat = &(disGrad->SpMat());
smat->EliminateCols(H1_essDof);
for (int dof=0; dof<HCurl_essDof.Size(); dof++) if (HCurl_essDof[dof]<0) { smat->EliminateRow(dof); }
gradMat = disGrad->ParallelAssemble();
delete disGrad;
//setup the H1 preconditioner
ParBilinearForm* H1Varf = new ParBilinearForm(H1FESpace);
H1Varf->AddDomainIntegrator(new DiffusionIntegrator(*beta_));
// H1Varf->AddDomainIntegrator(new MassIntegrator);
H1Varf->Assemble();
H1Varf->Finalize();
SparseMatrix &matH1(H1Varf->SpMat());
for (int dof=0; dof<H1_essDof.Size(); dof++) if (H1_essDof[dof]<0) { matH1.EliminateRowCol(dof); }
H1LaplaceMat = H1Varf->ParallelAssemble();
delete H1Varf;
amgH1 = new HypreBoomerAMG(*H1LaplaceMat);
//setup the H1 injection
FiniteElementCollection* fecH1Vec;
if (orderIm==1) { fecH1Vec = new LinearFECollection; }
else { fecH1Vec = new QuadraticFECollection; }
ParFiniteElementSpace *H1VecFESpace = new ParFiniteElementSpace(pmesh, fecH1Vec,
dim, Ordering::byVDIM);
Array<int> H1Vec_essDof(H1VecFESpace->GetVSize()); H1Vec_essDof = 0;
H1VecFESpace->GetEssentialVDofs(essBnd, H1Vec_essDof);
//setup the discrete gradient
ParDiscreteLinearOperator *disInterpol = new ParDiscreteLinearOperator(
H1VecFESpace, fespace);
disInterpol->AddDomainInterpolator(new IdentityInterpolator);
disInterpol->Assemble();
disInterpol->Finalize();
SparseMatrix* smatID = &(disInterpol->SpMat());
smatID->EliminateCols(H1Vec_essDof);
for (int dof=0; dof<HCurl_essDof.Size(); dof++) if (HCurl_essDof[dof]<0) { smatID->EliminateRow(dof); }
idMat = disInterpol->ParallelAssemble();
delete disInterpol;
//setup the H1-vec preconditioner
ParBilinearForm* H1VecVarf = new ParBilinearForm(H1VecFESpace);
H1VecVarf->AddDomainIntegrator(new VectorDiffusionIntegrator(*alpha_));
H1VecVarf->AddDomainIntegrator(new VectorMassIntegrator(*neg_beta_));
H1VecVarf->Assemble();
H1VecVarf->Finalize();
SparseMatrix &matH1Vec(H1VecVarf->SpMat());
for (int dof=0; dof<H1Vec_essDof.Size(); dof++) if (H1Vec_essDof[dof]<0) { matH1Vec.EliminateRowCol(dof); }
H1VecLaplaceMat = H1VecVarf->ParallelAssemble();
delete H1VecVarf;
amgVecH1 = new HypreBoomerAMG(*H1VecLaplaceMat);
amgVecH1->SetSystemsOptions(dim);
f = new Vector(fespace->GetTrueVSize());
fGrad = new Vector(H1FESpace->GetTrueVSize());
uGrad = new Vector(H1FESpace->GetTrueVSize());
fH1Vec = new Vector(H1VecFESpace->GetTrueVSize());
uH1Vec = new Vector(H1VecFESpace->GetTrueVSize());
amgH1->Mult(*fGrad, *uGrad);
amgVecH1->Mult(*fH1Vec, *uH1Vec);
pcgGrad = new CGSolver(MPI_COMM_WORLD);
pcgGrad->SetOperator(*H1LaplaceMat);
pcgGrad->SetPreconditioner(*amgH1);
pcgGrad->SetRelTol(1e-16);
pcgGrad->SetMaxIter(100000000);
pcgGrad->SetPrintLevel(-2);
pcgH1Vec = new CGSolver(MPI_COMM_WORLD);
pcgH1Vec->SetOperator(*H1VecLaplaceMat);
pcgH1Vec->SetPreconditioner(*amgVecH1);
pcgH1Vec->SetRelTol(1e-16);
pcgH1Vec->SetMaxIter(100000000);
pcgH1Vec->SetPrintLevel(-2);
delete H1FESpace; delete fecH1;
delete H1VecFESpace; delete fecH1Vec;
}
void setExactSolve(bool exSol)
{
exactSolves = exSol;
}
virtual void Mult(const Vector &x, Vector &y) const
{
smoother->Mult(x,y);
idMat->MultTranspose(x,*fH1Vec);
*uH1Vec = 0.0;
if (exactSolves) { pcgH1Vec->Mult(*fH1Vec, *uH1Vec); }
else { amgVecH1->Mult(*fH1Vec, *uH1Vec); }
idMat->Mult(1.0, *uH1Vec, 1.0, y);
gradMat->MultTranspose(x,*fGrad);
*uGrad = 0.0;
if (exactSolves) { pcgGrad->Mult(*fGrad, *uGrad); }
else { amgH1->Mult(*fGrad, *uGrad); }
gradMat->Mult(1.0, *uGrad, 1.0, y);
}
virtual void SetOperator(const Operator &op) {};
};
int main(int argc, char *argv[])
{
// 1. Initialize MPI.
int num_procs, myid;
MPI_Init(&argc, &argv);
MPI_Comm_size(MPI_COMM_WORLD, &num_procs);
MPI_Comm_rank(MPI_COMM_WORLD, &myid);
bool verbose = (myid==0);
// 2. Parse command-line options.
const char *mesh_file = "../data/cube4d_96.MFEM";
int order = 1;
bool set_bc = true;
bool static_cond = false;
bool visualization = 1;
int sequ_ref_levels = 0;
int par_ref_levels = 0;
double tol = 1e-6;
double coeffWeight = 1.0;
bool exactH1Solver = false;
bool spe10Coeff = false;
bool standardCG = true;
int NExpo = 8;
int weightStart = -NExpo;
int weightEnd = NExpo;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&sequ_ref_levels, "-sr", "--seqrefinement",
"Number of sequential refinement steps.");
args.AddOption(&par_ref_levels, "-pr", "--parrefinement",
"Number of parallel refinement steps.");
args.AddOption(&order, "-o", "--order",
"Polynomial order of the finite element space.");
args.AddOption(&set_bc, "-bc", "--impose-bc", "-no-bc", "--dont-impose-bc",
"Impose or not essential boundary conditions.");
args.AddOption(&tol, "-tol", "--tol",
"A parameter.");
args.AddOption(&freq, "-f", "--frequency", "Set the frequency for the exact"
" solution.");
args.AddOption(&coeffWeight, "-c", "--coeffMass",
"the weight for the mass term.");
args.AddOption(&exactH1Solver, "-exH1Sol", "--exactH1Solver", "-H1prec",
"--H1preconditioner",
"Use exact H1 solvers for the preconditioner.");
args.AddOption(&spe10Coeff, "-spe10", "--useSPE10Coeff", "-constCoeff",
"--constCoeff",
"Switch between the coefficients for the mass bilinear form.");
args.AddOption(&standardCG, "-sCG", "--stdCG", "-rCG", "--resCG",
"Switch between standard PCG or recompute residuals in every step and use the residuals itself for the stopping criteria.");
args.AddOption(&weightStart, "-ws", "--weightStart",
"the exponent for the starting weight (for the mass term).");
args.AddOption(&weightEnd, "-we", "--weightEnd",
"the exponent for the weight at the end (for the mass term).");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
if (verbose) { args.PrintOptions(cout); }
kappa = freq * M_PI;
Mesh *mesh;
ifstream imesh(mesh_file);
if (!imesh)
{
cerr << "\nCan not open mesh file: " << mesh_file << '\n' << endl;
return 2;
}
mesh = new Mesh(imesh, 1, 1);
imesh.close();
dim = mesh->Dimension();
int sdim = mesh->SpaceDimension();
if (dim !=4 || sdim != 4)
{
MPI_Finalize();
return 0;
}
for (int i=0; i<sequ_ref_levels; i++) { mesh->UniformRefinement(); }
if (verbose) { mesh->PrintCharacteristics(); }
if (verbose) { cout << "now we partition the mesh..." << endl << endl; }
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
delete mesh;
for (int i=0; i<par_ref_levels; i++) { pmesh->UniformRefinement(); }
pmesh->ReorientTetMesh();
pmesh->PrintInfo(std::cout);
if (verbose) { cout << endl; }
// 6. Define a parallel finite element space on the parallel mesh. Here we
// use the Nedelec finite elements of the specified order.
FiniteElementCollection *fec;
if (dim==4)
{
if (order==1) { fec = new ND1_4DFECollection; }
else { fec = new ND2_4DFECollection; }
}
else { fec = new ND_FECollection(order, dim); }
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
HYPRE_Int size = fespace->GlobalTrueVSize();
if (myid == 0)
{
cout << "Number of finite element unknowns: " << size << endl;
}
// 7. Determine the list of true (i.e. parallel conforming) essential
// boundary dofs. In this example, the boundary conditions are defined
// by marking all the boundary attributes from the mesh as essential
// (Dirichlet) and converting them to a list of true dofs.
Array<int> ess_tdof_list;
Array<int> ess_bdr(pmesh->bdr_attributes.Max());
ess_bdr = set_bc ? 1 : 0;
if (pmesh->bdr_attributes.Size())
{
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// 8. Set up the parallel linear form b(.) which corresponds to the
// right-hand side of the FEM linear system, which in this case is
// (f,phi_i) where f is given by the function f_exact and phi_i are the
// basis functions in the finite element fespace.
// 9. Define the solution vector x as a parallel finite element grid function
// corresponding to fespace. Initialize x by projecting the exact
// solution. Note that only values from the boundary edges will be used
// when eliminating the non-homogeneous boundary condition to modify the
// r.h.s. vector b.
ParGridFunction x(fespace);
VectorFunctionCoefficient E(sdim, E_exact);
for (int expo=weightStart; expo<=weightEnd; expo++)
{
double weight = pow(10.0,expo);
kappa = weight;
VectorFunctionCoefficient f(sdim, f_exact);
ParLinearForm *b = new ParLinearForm(fespace);
b->AddDomainIntegrator(new VectorFEDomainLFIntegrator(f));
b->Assemble();
x.ProjectCoefficient(E);
// 10. Set up the parallel bilinear form corresponding to the EM diffusion
// operator curl muinv curl + sigma I, by adding the curl-curl and the
// mass domain integrators.
// std::string permFile = "spe_perm.dat";
// InversePermeabilityFunction::ReadPermeabilityFile(permFile, MPI_COMM_WORLD);
Coefficient *alpha = new ConstantCoefficient(1.0);
Coefficient *beta;
// if(spe10Coeff) beta = new FunctionCoefficient(InversePermeabilityFunction::Norm2Permeability);
// else
beta = new ConstantCoefficient(weight);
Coefficient *neg_beta = new ConstantCoefficient(-weight);
ParBilinearForm *a = new ParBilinearForm(fespace);
a->AddDomainIntegrator(new CurlCurlIntegrator(*alpha));
a->AddDomainIntegrator(new VectorFEMassIntegrator(*beta));
// 11. Assemble the parallel bilinear form and the corresponding linear
// system, applying any necessary transformations such as: parallel
// assembly, eliminating boundary conditions, applying conforming
// constraints for non-conforming AMR, static condensation, etc.
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
HypreParMatrix A;
Vector B, X;
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
if (myid == 0)
{
cout << "Size of linear system: " << A.GetGlobalNumRows() << endl;
}
// 12. Define and apply a parallel PCG solver for AX=B with the AMS
// preconditioner from hypre.
ParFiniteElementSpace *prec_fespace =
(a->StaticCondensationIsEnabled() ? a->SCParFESpace() : fespace);
Solver *prec;
if (dim<=3) { prec = new HypreAMS(A, prec_fespace); }
else if (dim==4) { prec = new Curl4dPrec(&A, fespace, alpha, beta, neg_beta, ess_bdr, order, false); }
IterativeSolver *pcg = new CGSolver(MPI_COMM_WORLD);
pcg->SetOperator(A);
pcg->SetRelTol(tol);
pcg->SetMaxIter(5000);
pcg->SetPrintLevel(1);
pcg->SetPreconditioner(*prec);
pcg->Mult(B, X);
int iter = pcg->GetNumIterations();
if (myid==0)
{
cout << "Weigth: " << weight << " " << iter << endl;
int *iters = LoadIterations(10, 2*NExpo+1);
putIterationsInArray(iter, sequ_ref_levels+par_ref_levels, expo+NExpo,
2*NExpo+1, iters);
WriteIterations(iters, 10, 2*NExpo+1);
}
// 13. Recover the parallel grid function corresponding to X. This is the
// local finite element solution on each processor.
a->RecoverFEMSolution(X, *b, x);
// 14. Compute and print the L^2 norm of the error.
{
double err = x.ComputeL2Error(E);
if (myid == 0)
{
cout << "\n|| E_h - E ||_{L^2} = " << err << '\n' << endl;
}
}
// 15. Save the refined mesh and the solution in parallel. This output can
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
// {
// ostringstream mesh_name, sol_name;
// mesh_name << "mesh." << setfill('0') << setw(6) << myid;
// sol_name << "sol." << setfill('0') << setw(6) << myid;
//
// ofstream mesh_ofs(mesh_name.str().c_str());
// mesh_ofs.precision(8);
// pmesh->Print(mesh_ofs);
//
// ofstream sol_ofs(sol_name.str().c_str());
// sol_ofs.precision(8);
// x.Save(sol_ofs);
// }
// // 16. Send the solution by socket to a GLVis server.
// if (visualization)
// {
// char vishost[] = "localhost";
// int visport = 19916;
// socketstream sol_sock(vishost, visport);
// sol_sock << "parallel " << num_procs << " " << myid << "\n";
// sol_sock.precision(8);
// sol_sock << "solution\n" << *pmesh << x << flush;
// }
delete pcg;
delete prec;
delete a;
delete alpha;
delete beta;
delete b;
}
// 17. Free the used memory.
delete fespace;
delete fec;
delete pmesh;
MPI_Finalize();
return 0;
}
void E_exact(const Vector &x, Vector &E)
{
if (dim==4)
{
E(0) = sin(M_PI*x(0))*cos(M_PI*x(1))*cos(M_PI*x(2))*cos(M_PI*x(3));
E(1) = -cos(M_PI*x(0))*sin(M_PI*x(1))*cos(M_PI*x(2))*cos(M_PI*x(3));
E(2) = cos(M_PI*x(0))*cos(M_PI*x(1))*sin(M_PI*x(2))*cos(M_PI*x(3));
E(3) = -cos(M_PI*x(0))*cos(M_PI*x(1))*cos(M_PI*x(2))*sin(M_PI*x(3));
}
else if (dim == 3)
{
E(0) = sin(kappa * x(1));
E(1) = sin(kappa * x(2));
E(2) = sin(kappa * x(0));
}
else
{
E(0) = sin(kappa * x(1));
E(1) = sin(kappa * x(0));
if (x.Size() == 3) { E(2) = 0.0; }
}
}
void f_exact(const Vector &x, Vector &f)
{
//f_exact = E + DivSkew P( curl E ), where P is the 4d permutation operator
if (dim==4)
{
f(0) = (kappa+4.0*M_PI*M_PI)*sin(M_PI*x(0))*cos(M_PI*x(1))*cos(M_PI*x(2))*cos(
M_PI*x(3));
f(1) = -(kappa+4.0*M_PI*M_PI)*cos(M_PI*x(0))*sin(M_PI*x(1))*cos(M_PI*x(2))*cos(
M_PI*x(3));
f(2) = (kappa+4.0*M_PI*M_PI)*cos(M_PI*x(0))*cos(M_PI*x(1))*sin(M_PI*x(2))*cos(
M_PI*x(3));
f(3) = -(kappa+4.0*M_PI*M_PI)*cos(M_PI*x(0))*cos(M_PI*x(1))*cos(M_PI*x(2))*sin(
M_PI*x(3));
}
else if (dim == 3)
{
f(0) = (1. + kappa * kappa) * sin(kappa * x(1));
f(1) = (1. + kappa * kappa) * sin(kappa * x(2));
f(2) = (1. + kappa * kappa) * sin(kappa * x(0));
}
else
{
f(0) = (1. + kappa * kappa) * sin(kappa * x(1));
f(1) = (1. + kappa * kappa) * sin(kappa * x(0));
if (x.Size() == 3) { f(2) = 0.0; }
}
}
+782
View File
@@ -0,0 +1,782 @@
// MFEM Example 3 - Parallel Version
//
// Compile with: make ex3p
//
// Sample runs: mpirun -np 4 ex3p -m ../data/star.mesh
// mpirun -np 4 ex3p -m ../data/square-disc.mesh -o 2
// mpirun -np 4 ex3p -m ../data/beam-tet.mesh
// mpirun -np 4 ex3p -m ../data/beam-hex.mesh
// mpirun -np 4 ex3p -m ../data/escher.mesh
// mpirun -np 4 ex3p -m ../data/fichera.mesh
// mpirun -np 4 ex3p -m ../data/fichera-q2.vtk
// mpirun -np 4 ex3p -m ../data/fichera-q3.mesh
// mpirun -np 4 ex3p -m ../data/square-disc-nurbs.mesh
// mpirun -np 4 ex3p -m ../data/beam-hex-nurbs.mesh
// mpirun -np 4 ex3p -m ../data/amr-quad.mesh -o 2
// mpirun -np 4 ex3p -m ../data/amr-hex.mesh
// mpirun -np 4 ex3p -m ../data/star-surf.mesh -o 2
// mpirun -np 4 ex3p -m ../data/mobius-strip.mesh -o 2 -f 0.1
// mpirun -np 4 ex3p -m ../data/klein-bottle.mesh -o 2 -f 0.1
//
// Description: This example code solves a simple electromagnetic diffusion
// problem corresponding to the second order definite Maxwell
// equation curl curl E + E = f with boundary condition
// E x n = <given tangential field>. Here, we use a given exact
// solution E and compute the corresponding r.h.s. f.
// We discretize with Nedelec finite elements in 2D or 3D.
//
// The example demonstrates the use of H(curl) finite element
// spaces with the curl-curl and the (vector finite element) mass
// bilinear form, as well as the computation of discretization
// error when the exact solution is known. Static condensation is
// also illustrated.
//
// We recommend viewing examples 1-2 before viewing this example.
#include "mfem.hpp"
#include <fstream>
#include <iostream>
#include "./spe10_coeff.cpp"
using namespace std;
using namespace mfem;
int* LoadIterations(int NRows, int NCol)
{
ifstream in("iter_DivSkew.txt");
//initialize
int *iters = new int[NCol*NRows];
for (int col = 0; col < NCol; col++)
{
for (int row = 0; row < NRows; row++)
{
iters[row*NCol+col] = -1;
}
}
if (!in)
{
cout << "Cannot open file.\n";
return iters;
}
for (int row = 0; row < NRows; row++)
for (int col = 0; col < NCol; col++)
{
if (in.eof())
{
in.close();
return iters;
}
in >> iters[row*NCol+col];
}
in.close();
return iters;
}
void putIterationsInArray(int iter, int row, int col, int NCol, int* iters)
{
iters[row*NCol+col] = iter;
}
void WriteIterations(int *iters, int NRows, int NCol)
{
ofstream out;
out.open("iter_DivSkew.txt",fstream::out);
if (!out)
{
cout << "Cannot open file.\n";
delete[] iters;
return;
}
for (int row = 0; row < NRows; row++)
{
for (int col = 0; col < NCol; col++)
{
out << iters[row*NCol+col] << "\t";
}
out << endl;
}
out.close();
delete[] iters;
}
// Exact solution, E, and r.h.s., f. See below for implementation.
void E_exact_vec(const Vector &x, Vector &E);
void E_exact(const Vector &, DenseMatrix &);
void f_exact(const Vector &, DenseMatrix &);
class DivSkew4dPrec : public Solver
{
private:
HypreParMatrix *A;
ParFiniteElementSpace *fespace;
Coefficient *alpha_, *beta_;
//kernel operators
HypreParMatrix *P_d_HCurl_HDivSkew;
HypreParMatrix *P_H1_HCurl;
HypreParMatrix *H1_KernelMat;
HypreBoomerAMG *amgH1_Kernel;
//"image" operators
HypreParMatrix *P_H1_HDivSkew;
HypreParMatrix *H1_ImageMat;
HypreBoomerAMG *amgH1_Image;
HypreParMatrix *HCurlMat;
HypreSmoother * smootherDivSkew;
HypreSmoother * smootherCurl;
CGSolver *pcgKernel;
CGSolver *pcgImage;
Vector *f;
Vector *fKernel, *uKernel;
Vector *fImage, *uImage;
Vector *fCurl, *uCurl;
bool exactSolves;
FiniteElementCollection* fecHCurlKernel;
ParFiniteElementSpace *HCurlKernelFESpace;
public:
~DivSkew4dPrec()
{
delete pcgImage, pcgKernel;
delete f, fKernel, uKernel, fImage, uImage, fCurl, uCurl;
delete smootherCurl, HCurlMat;
delete P_d_HCurl_HDivSkew, P_H1_HDivSkew, P_H1_HCurl;
delete amgH1_Image, H1_ImageMat;
delete amgH1_Kernel, H1_KernelMat;
delete smootherDivSkew;
delete HCurlKernelFESpace, fecHCurlKernel;
}
DivSkew4dPrec(HypreParMatrix *AUser, ParFiniteElementSpace *fespaceUser,
Coefficient *alpha, Coefficient *beta,
const Array<int> &essBnd, int orderKernel=1, bool exactSolvesUser=false)
{
A = AUser;
fespace = fespaceUser;
alpha_ = alpha;
beta_ = beta;
ParMesh *pmesh = fespace->GetParMesh();
int dim = pmesh->Dimension();
exactSolves = exactSolvesUser;
int orderIm=1; //H1 --> H(divSkew)
int orderKer=orderKernel; //curl V --> H(divSkew)
smootherDivSkew = new HypreSmoother(*A, 16, 3);
Array<int> HDivSkew_essDof(fespace->GetVSize()); HDivSkew_essDof = 0;
fespace->GetEssentialVDofs(essBnd, HDivSkew_essDof);
//setup the H1 FESpace for the kernel
FiniteElementCollection* fecH1Kernel = new H1_FECollection(orderKer, 4);
ParFiniteElementSpace *H1KernelFESpace = new ParFiniteElementSpace(pmesh,
fecH1Kernel, dim, Ordering::byVDIM);
Array<int> H1Kernel_essDof(H1KernelFESpace->GetVSize()); H1Kernel_essDof = 0;
H1KernelFESpace->GetEssentialVDofs(essBnd, H1Kernel_essDof);
//setup the H(curl) FESpace for the kernel
if (orderKer==1) { fecHCurlKernel = new ND1_4DFECollection; }
else { fecHCurlKernel = new ND2_4DFECollection; }
HCurlKernelFESpace = new ParFiniteElementSpace(pmesh,
fecHCurlKernel);
Array<int> HCurlKernel_essDof(HCurlKernelFESpace->GetVSize());
HCurlKernel_essDof = 0;
HCurlKernelFESpace->GetEssentialVDofs(essBnd, HCurlKernel_essDof);
//setup the FESpace for the H1 injection
FiniteElementCollection* fecH1Vec;
if (orderIm==1) { fecH1Vec = new LinearFECollection; }
else { fecH1Vec = new QuadraticFECollection; }
ParFiniteElementSpace *H1_ImageFESpace = new ParFiniteElementSpace(pmesh,
fecH1Vec, 6, Ordering::byVDIM);
Array<int> H1Image_essDof(H1_ImageFESpace->GetVSize()); H1Image_essDof = 0;
H1_ImageFESpace->GetEssentialVDofs(essBnd, H1Image_essDof);
//setup the H1 preconditioner for the kernel
ParBilinearForm* H1Varf = new ParBilinearForm(H1KernelFESpace);
H1Varf->AddDomainIntegrator(new VectorDiffusionIntegrator(*beta_));
// H1Varf->AddDomainIntegrator(new VectorMassIntegrator);
H1Varf->Assemble();
H1Varf->Finalize();
SparseMatrix &matH1(H1Varf->SpMat());
for (int dof = 0; dof < H1Kernel_essDof.Size(); dof++)
if (H1Kernel_essDof[dof] < 0)
{
matH1.EliminateRowCol(dof);
}
H1_KernelMat = H1Varf->ParallelAssemble();
delete H1Varf;
amgH1_Kernel = new HypreBoomerAMG(*H1_KernelMat);
amgH1_Kernel->SetSystemsOptions(dim);
amgH1_Kernel->SetPrintLevel(0);
//setup the H1 preconditioner for the image
ParBilinearForm* H1VecVarf = new ParBilinearForm(H1_ImageFESpace);
VectorDiffusionIntegrator *alpha_integ = new VectorDiffusionIntegrator(*alpha_);
alpha_integ->SetVDim(6);
H1VecVarf->AddDomainIntegrator(alpha_integ);
VectorMassIntegrator *beta_integ = new VectorMassIntegrator(*beta);
beta_integ->SetVDim(6);
H1VecVarf->AddDomainIntegrator(beta_integ);
H1VecVarf->Assemble();
H1VecVarf->Finalize();
SparseMatrix &matH1Vec(H1VecVarf->SpMat());
for (int dof=0; dof<H1Image_essDof.Size(); dof++) if (H1Image_essDof[dof]<0) { matH1Vec.EliminateRowCol(dof); }
H1_ImageMat = H1VecVarf->ParallelAssemble();
delete H1VecVarf;
amgH1_Image = new HypreBoomerAMG(*H1_ImageMat);
amgH1_Image->SetSystemsOptions(6);
amgH1_Image->SetPrintLevel(0);
//setup the injection of H1 into H(curl)
ParDiscreteLinearOperator *disInterpol = new ParDiscreteLinearOperator(
H1KernelFESpace, HCurlKernelFESpace);
disInterpol->AddDomainInterpolator(new IdentityInterpolator);
disInterpol->Assemble();
disInterpol->Finalize();
SparseMatrix* smatID = &(disInterpol->SpMat());
smatID->EliminateCols(H1Kernel_essDof);
for (int dof=0; dof<HCurlKernel_essDof.Size();
dof++) if (HCurlKernel_essDof[dof]<0) { smatID->EliminateRow(dof); }
P_H1_HCurl = disInterpol->ParallelAssemble();
delete disInterpol;
//setup the injection of H1 into H(DivSkew)
ParDiscreteLinearOperator *disInterpolIm = new ParDiscreteLinearOperator(
H1_ImageFESpace, fespace);
disInterpolIm->AddDomainInterpolator(new IdentityInterpolator);
disInterpolIm->Assemble();
disInterpolIm->Finalize();
SparseMatrix* smatIDIm = &(disInterpolIm->SpMat());
smatIDIm->EliminateCols(H1Image_essDof);
for (int dof=0; dof<HDivSkew_essDof.Size(); dof++) if (HDivSkew_essDof[dof]<0) { smatIDIm->EliminateRow(dof); }
P_H1_HDivSkew = disInterpolIm->ParallelAssemble();
delete disInterpolIm;
//setup the injection of the curl(H(curl)) into H(DivSkew)
ParDiscreteLinearOperator *disCurl = new ParDiscreteLinearOperator(
HCurlKernelFESpace, fespace);
disCurl->AddDomainInterpolator(new CurlInterpolator);
disCurl->Assemble();
disCurl->Finalize();
SparseMatrix* smatCurl = &(disCurl->SpMat());
smatCurl->EliminateCols(HCurlKernel_essDof);
for (int dof=0; dof<HDivSkew_essDof.Size(); dof++) if (HDivSkew_essDof[dof]<0) { smatCurl->EliminateRow(dof); }
P_d_HCurl_HDivSkew = disCurl->ParallelAssemble();
delete disCurl;
//setup the smoother for H(curl)
// Coefficient *massC = new ConstantCoefficient(1.0);
// Coefficient *CurlCurlC = new ConstantCoefficient(1.0);
ParBilinearForm *a_HCurl = new ParBilinearForm(HCurlKernelFESpace);
a_HCurl->AddDomainIntegrator(new CurlCurlIntegrator(*beta_));
// a_HCurl->AddDomainIntegrator(new CurlCurlIntegrator(*CurlCurlC));
// a_HCurl->AddDomainIntegrator(new VectorFEMassIntegrator(*massC));
a_HCurl->Assemble();
a_HCurl->Finalize();
SparseMatrix &matHCurl(a_HCurl->SpMat());
for (int dof=0; dof<HCurlKernel_essDof.Size();
dof++) if (HCurlKernel_essDof[dof]<0) { matHCurl.EliminateRowCol(dof); }
HCurlMat = a_HCurl->ParallelAssemble();
delete a_HCurl;
smootherCurl = new HypreSmoother(*HCurlMat, 16, 3);
f = new Vector(fespace->GetTrueVSize());
fKernel = new Vector(H1KernelFESpace->GetTrueVSize());
uKernel = new Vector(H1KernelFESpace->GetTrueVSize());
fImage = new Vector(H1_ImageFESpace->GetTrueVSize());
uImage = new Vector(H1_ImageFESpace->GetTrueVSize());
fCurl = new Vector(HCurlKernelFESpace->GetTrueVSize());
uCurl = new Vector(HCurlKernelFESpace->GetTrueVSize());
amgH1_Kernel->Mult(*fKernel, *uKernel);
amgH1_Image->Mult(*fImage, *uImage);
pcgKernel = new CGSolver(MPI_COMM_WORLD);
pcgKernel->SetOperator(*H1_KernelMat);
pcgKernel->SetPreconditioner(*amgH1_Kernel);
pcgKernel->SetRelTol(1e-16);
pcgKernel->SetMaxIter(100000000);
pcgKernel->SetPrintLevel(-2);
pcgImage = new CGSolver(MPI_COMM_WORLD);
pcgImage->SetOperator(*H1_ImageMat);
pcgImage->SetPreconditioner(*amgH1_Image);
pcgImage->SetRelTol(1e-16);
pcgImage->SetMaxIter(100000000);
pcgImage->SetPrintLevel(-2);
delete H1KernelFESpace, fecH1Kernel;
delete H1_ImageFESpace, fecH1Vec;
}
void setExactSolve(bool exSol)
{
exactSolves = exSol;
}
virtual void Mult(const Vector &x, Vector &y) const
{
smootherDivSkew->Mult(x,y);
P_H1_HDivSkew->MultTranspose(x,*fImage);
*uImage = 0.0;
if (exactSolves) { pcgImage->Mult(*fImage, *uImage); }
else { amgH1_Image->Mult(*fImage, *uImage); }
P_H1_HDivSkew->Mult(1.0, *uImage, 1.0, y);
*uCurl = 0.0;
P_d_HCurl_HDivSkew->MultTranspose(x,*fCurl);
smootherCurl->Mult(*fCurl, *uCurl);
P_H1_HCurl->MultTranspose(*fCurl,*fKernel);
*uKernel = 0.0;
if (exactSolves) { pcgKernel->Mult(*fKernel, *uKernel); }
else { amgH1_Kernel->Mult(*fKernel, *uKernel); }
P_H1_HCurl->Mult(1.0, *uKernel, 1.0, *uCurl);
P_d_HCurl_HDivSkew->Mult(1.0, *uCurl, 1.0, y);
}
virtual void SetOperator(const Operator &op) {};
};
int main(int argc, char *argv[])
{
// 1. Initialize MPI.
int num_procs, myid;
MPI_Init(&argc, &argv);
MPI_Comm_size(MPI_COMM_WORLD, &num_procs);
MPI_Comm_rank(MPI_COMM_WORLD, &myid);
bool verbose = (myid==0);
// 2. Parse command-line options.
const char *mesh_file = "../data/cube4d_96.MFEM";
int order = 1;
bool set_bc = true;
bool static_cond = false;
bool visualization = 1;
int sequ_ref_levels = 0;
int par_ref_levels = 0;
double tol = 1e-6;
double coeffWeight = 1.0;
bool exactH1Solver = false;
bool spe10Coeff = false;
bool standardCG = true;
int NExpo = 8;
int weightStart = -NExpo;
int weightEnd = NExpo;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&sequ_ref_levels, "-sr", "--seqrefinement",
"Number of sequential refinement steps.");
args.AddOption(&par_ref_levels, "-pr", "--parrefinement",
"Number of parallel refinement steps.");
args.AddOption(&order, "-o", "--order",
"Polynomial order of the finite element space.");
args.AddOption(&set_bc, "-bc", "--impose-bc", "-no-bc", "--dont-impose-bc",
"Impose or not essential boundary conditions.");
args.AddOption(&tol, "-tol", "--tol",
"A parameter.");
args.AddOption(&coeffWeight, "-c", "--coeffMass",
"the weight for the mass term.");
args.AddOption(&exactH1Solver, "-exH1Sol", "--exactH1Solver", "-H1prec",
"--H1preconditioner",
"Use exact H1 solvers for the preconditioner.");
args.AddOption(&spe10Coeff, "-spe10", "--useSPE10Coeff", "-constCoeff",
"--constCoeff",
"Switch between the coefficients for the mass bilinear form.");
args.AddOption(&standardCG, "-sCG", "--stdCG", "-rCG", "--resCG",
"Switch between standard PCG or recompute residuals in every step and use the residuals itself for the stopping criteria.");
args.AddOption(&weightStart, "-ws", "--weightStart",
"the exponent for the starting weight (for the mass term).");
args.AddOption(&weightEnd, "-we", "--weightEnd",
"the exponent for the weight at the end (for the mass term).");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
if (verbose) { args.PrintOptions(cout); }
Mesh *mesh;
ifstream imesh(mesh_file);
if (!imesh)
{
cerr << "\nCan not open mesh file: " << mesh_file << '\n' << endl;
return 2;
}
mesh = new Mesh(imesh, 1, 1);
imesh.close();
int dim = mesh->Dimension();
int sdim = mesh->SpaceDimension();
if (dim !=4 || sdim != 4)
{
MPI_Finalize();
return 0;
}
for (int i=0; i<sequ_ref_levels; i++) { mesh->UniformRefinement(); }
if (verbose) { mesh->PrintCharacteristics(); }
if (verbose) { cout << "now we partition the mesh..." << endl << endl; }
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
delete mesh;
for (int i=0; i<par_ref_levels; i++) { pmesh->UniformRefinement(); }
pmesh->PrintInfo(std::cout);
if (verbose) { cout << endl; }
// 6. Define a parallel finite element space on the parallel mesh. Here we
// use the Nedelec finite elements of the specified order.
FiniteElementCollection *fec;
if (order==1) { fec = new DivSkew1_4DFECollection; }
// else fec = new F2K1_4DFECollection;
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
fespace->SetUpdateOperatorType(Operator::Hypre_ParCSR);
HYPRE_Int size = fespace->GlobalTrueVSize();
// 7. Determine the list of true (i.e. parallel conforming) essential
// boundary dofs. In this example, the boundary conditions are defined
// by marking all the boundary attributes from the mesh as essential
// (Dirichlet) and converting them to a list of true dofs.
Array<int> ess_tdof_list;
Array<int> ess_bdr(pmesh->bdr_attributes.Max());
ess_bdr = set_bc ? 1 : 0;
if (pmesh->bdr_attributes.Size())
{
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
if (myid == 0)
{
cout << "Number of finite element unknowns: " << size << endl;
}
// 8. Set up the parallel linear form b(.) which corresponds to the
// right-hand side of the FEM linear system, which in this case is
// (f,phi_i) where f is given by the function f_exact and phi_i are the
// basis functions in the finite element fespace.
MatrixFunctionCoefficient f(sdim, f_exact);
MatrixFunctionCoefficient solMat(sdim, E_exact);
VectorFunctionCoefficient solVec(6, E_exact_vec);
// 9. Define the solution vector x as a parallel finite element grid function
// corresponding to fespace. Initialize x by projecting the exact
// solution. Note that only values from the boundary edges will be used
// when eliminating the non-homogeneous boundary condition to modify the
// r.h.s. vector b.
ParGridFunction x(fespace);
for (int expo=weightStart; expo<=weightEnd; expo++)
{
double weight = pow(10.0,expo);
x.ProjectCoefficient(solVec);
ParLinearForm *b = new ParLinearForm(fespace);
b->AddDomainIntegrator(new MatFEDomainLFIntegrator(f));
b->Assemble();
// cout << x << endl;
// x = 0.0;
// 10. Set up the parallel bilinear form corresponding to the EM diffusion
// operator curl muinv curl + sigma I, by adding the curl-curl and the
// mass domain integrators.
// std::string permFile = "spe_perm.dat";
// InversePermeabilityFunction::ReadPermeabilityFile(permFile, MPI_COMM_WORLD);
Coefficient *alpha = new ConstantCoefficient(1.0);
Coefficient *beta;
// if(spe10Coeff) beta = new FunctionCoefficient(InversePermeabilityFunction::Norm2Permeability);
// else
beta = new ConstantCoefficient(weight);
ParBilinearForm *a = new ParBilinearForm(fespace);
a->AddDomainIntegrator(new DivSkewDivSkewIntegrator(*alpha));
a->AddDomainIntegrator(new VectorFE_DivSkewMassIntegrator(*beta));
// 11. Assemble the parallel bilinear form and the corresponding linear
// system, applying any necessary transformations such as: parallel
// assembly, eliminating boundary conditions, applying conforming
// constraints for non-conforming AMR, static condensation, etc.
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
HypreParMatrix A;
Vector B, X;
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
if (myid == 0)
{
cout << "Size of linear system: " << A.GetGlobalNumRows() << endl;
}
//Define the preconditioner
if (myid == 0) { cout << "Set up the preconditioner" << endl; }
Solver *prec;
if (dim==4) { prec = new DivSkew4dPrec(&A, fespace, alpha, beta, ess_bdr, order, exactH1Solver); }
IterativeSolver *pcg = new CGSolver(MPI_COMM_WORLD);
pcg->SetOperator(A);
pcg->SetRelTol(tol);
pcg->SetMaxIter(500);
pcg->SetPrintLevel(1);
pcg->SetPreconditioner(*prec);
pcg->Mult(B, X);
delete prec;
int iter = pcg->GetNumIterations();
if (myid==0)
{
cout << "Weigth: " << weight << " " << iter << endl;
int *iters = LoadIterations(10, 2*NExpo+1);
putIterationsInArray(iter, sequ_ref_levels+par_ref_levels, expo+NExpo,
2*NExpo+1, iters);
WriteIterations(iters, 10, 2*NExpo+1);
}
// 13. Recover the parallel grid function corresponding to X. This is the
// local finite element solution on each processor.
a->RecoverFEMSolution(X, *b, x);
// 14. Compute and print the L^2 norm of the error.
{
double error = 0.0;
for (int i = 0; i < fespace->GetNE(); i++)
{
const FiniteElement* fe = fespace->GetFE(i);
int fdof = fe->GetDof();
ElementTransformation* transf = fespace->GetElementTransformation(i);
DenseMatrix shape(fdof,dim*dim);
int intorder = 2*fe->GetOrder() + 1; // <----------
const IntegrationRule *ir;
ir = &(IntRules.Get(fe->GetGeomType(), intorder));
Vector elSol(dim*dim);
DenseMatrix elSolMat(dim,dim);
DenseMatrix exactSol(dim,dim);
Vector exactSolVec(dim*dim);
Array<int> vdofs;
fespace->GetElementVDofs(i, vdofs);
for (int j = 0; j < ir->GetNPoints(); j++)
{
const IntegrationPoint &ip = ir->IntPoint(j);
transf->SetIntPoint(&ip);
fe->CalcVShape(*transf, shape);
elSol = 0.0;
for (int k = 0; k < fdof; k++)
{
if (vdofs[k] >= 0)
{
for (int l=0; l<dim*dim; l++) { elSol(l) += shape(k,l)*x(vdofs[k]); }
}
else
{
for (int l=0; l<dim*dim; l++) { elSol(l) -= shape(k,l)*x(-1-vdofs[k]); }
}
}
for (int k=0; k<dim; k++)
for (int l=0; l<dim; l++)
{
elSolMat(k,l) = elSol(dim*k+l);
}
solMat.Eval(exactSol,*transf, ip);
for (int k=0; k<dim; k++)
for (int l=0; l<dim; l++)
{
exactSolVec(dim*k+l) = exactSol(k,l);
}
elSol.Add(-1.0, exactSolVec);
error += ip.weight * fabs(transf->Weight()) * (elSol * elSol);
}
}
double globalError = 0.0;
MPI_Allreduce(&error, &globalError, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
if (myid==0) { std::cout << "L2 error: " << sqrt(globalError) << std::endl; }
}
delete pcg;
delete a;
delete alpha;
delete beta;
delete b;
}
// 17. Free the used memory.
delete fespace;
delete fec;
delete pmesh;
MPI_Finalize();
return 0;
}
void E_exact_vec(const Vector &x, Vector &E)
{
int dim = x.Size();
if (dim==4)
{
E.SetSize(6);
double s0 = sin(M_PI*x(0)), s1 = sin(M_PI*x(1)), s2 = sin(M_PI*x(2)),
s3 = sin(M_PI*x(3));
double c0 = cos(M_PI*x(0)), c1 = cos(M_PI*x(1)), c2 = cos(M_PI*x(2)),
c3 = cos(M_PI*x(3));
E(0) = c0*c1*s2*s3;
E(1) = -c0*s1*c2*s3;
E(2) = c0*s1*s2*c3;
E(3) = s0*c1*c2*s3;
E(4) = -s0*c1*s2*c3;
E(5) = s0*s1*c2*c3;
}
}
void E_exact(const Vector &x, DenseMatrix &E)
{
int dim = x.Size();
E.SetSize(dim*dim);
if (dim==4)
{
Vector vecE; E_exact_vec(x, vecE);
E = 0.0;
E(0,1) = vecE(0);
E(0,2) = vecE(1);
E(0,3) = vecE(2);
E(1,2) = vecE(3);
E(1,3) = vecE(4);
E(2,3) = vecE(5);
E(1,0) = -E(0,1);
E(2,0) = -E(0,2);
E(3,0) = -E(0,3);
E(2,1) = -E(1,2);
E(3,1) = -E(1,3);
E(3,2) = -E(2,3);
}
}
//f_exact = E + 0.5 * P( curl DivSkew E ), where P is the 4d permutation operator
void f_exact(const Vector &x, DenseMatrix &f)
{
int dim = x.Size();
f.SetSize(dim,dim);
if (dim==4)
{
f = 0.0;
double s0 = sin(M_PI*x(0)), s1 = sin(M_PI*x(1)), s2 = sin(M_PI*x(2)),
s3 = sin(M_PI*x(3));
double c0 = cos(M_PI*x(0)), c1 = cos(M_PI*x(1)), c2 = cos(M_PI*x(2)),
c3 = cos(M_PI*x(3));
f(0,1) = (1.0 + 1.0 * M_PI*M_PI)*c0*c1*s2*s3;
f(0,2) = -(1.0 + 0.0 * M_PI*M_PI)*c0*s1*c2*s3;
f(0,3) = (1.0 + 1.0 * M_PI*M_PI)*c0*s1*s2*c3;
f(1,2) = (1.0 - 1.0 * M_PI*M_PI)*s0*c1*c2*s3;
f(1,3) = -(1.0 + 0.0 * M_PI*M_PI)*s0*c1*s2*c3;
f(2,3) = (1.0 + 1.0 * M_PI*M_PI)*s0*s1*c2*c3;
f(1,0) = -f(0,1);
f(2,0) = -f(0,2);
f(3,0) = -f(0,3);
f(2,1) = -f(1,2);
f(3,1) = -f(1,3);
f(3,2) = -f(2,3);
}
}
+800
View File
@@ -0,0 +1,800 @@
// MFEM Example 4 - Parallel Version
//
// Compile with: make ex4p
//
// Sample runs: mpirun -np 4 ex4p -m ../data/square-disc.mesh
// mpirun -np 4 ex4p -m ../data/star.mesh
// mpirun -np 4 ex4p -m ../data/beam-tet.mesh
// mpirun -np 4 ex4p -m ../data/beam-hex.mesh
// mpirun -np 4 ex4p -m ../data/escher.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/fichera.mesh -o 2 -hb
// mpirun -np 4 ex4p -m ../data/fichera-q2.vtk
// mpirun -np 4 ex4p -m ../data/fichera-q3.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/square-disc-nurbs.mesh -o 3
// mpirun -np 4 ex4p -m ../data/beam-hex-nurbs.mesh -o 3
// mpirun -np 4 ex4p -m ../data/periodic-square.mesh -no-bc
// mpirun -np 4 ex4p -m ../data/periodic-cube.mesh -no-bc
// mpirun -np 4 ex4p -m ../data/amr-quad.mesh
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -hb
// mpirun -np 4 ex4p -m ../data/star-surf.mesh -o 3 -hb
//
// Description: This example code solves a simple 2D/3D H(div) diffusion
// problem corresponding to the second order definite equation
// -grad(alpha div F) + beta F = f with boundary condition F dot n
// = <given normal field>. Here, we use a given exact solution F
// and compute the corresponding r.h.s. f. We discretize with
// Raviart-Thomas finite elements.
//
// The example demonstrates the use of H(div) finite element
// spaces with the grad-div and H(div) vector finite element mass
// bilinear form, as well as the computation of discretization
// error when the exact solution is known. Bilinear form
// hybridization and static condensation are also illustrated.
//
// We recommend viewing examples 1-3 before viewing this example.
#include "mfem.hpp"
#include <fstream>
#include <iostream>
#include "./spe10_coeff.cpp"
using namespace std;
using namespace mfem;
int* LoadIterations(int NRows, int NCol)
{
ifstream in("iter_div.txt");
//initialize
int *iters = new int[NCol*NRows];
for (int col = 0; col < NCol; col++)
{
for (int row = 0; row < NRows; row++)
{
iters[row*NCol+col] = -1;
}
}
if (!in)
{
cout << "Cannot open file.\n";
return iters;
}
for (int row = 0; row < NRows; row++)
for (int col = 0; col < NCol; col++)
{
if (in.eof())
{
in.close();
return iters;
}
in >> iters[row*NCol+col];
}
in.close();
return iters;
}
void putIterationsInArray(int iter, int row, int col, int NCol, int* iters)
{
iters[row*NCol+col] = iter;
}
void WriteIterations(int *iters, int NRows, int NCol)
{
ofstream out;
out.open("iter_div.txt",fstream::out);
if (!out)
{
cout << "Cannot open file.\n";
delete[] iters;
return;
}
for (int row = 0; row < NRows; row++)
{
for (int col = 0; col < NCol; col++)
{
out << iters[row*NCol+col] << "\t";
}
out << endl;
}
out.close();
delete[] iters;
}
// Exact solution, F, and r.h.s., f. See below for implementation.
void F_exact(const Vector &, Vector &);
void f_exact(const Vector &, Vector &);
double freq = 1.0, kappa;
class div4dPrec : public Solver
{
private:
HypreParMatrix *A;
ParFiniteElementSpace *fespace;
Coefficient *alpha_, *beta_;
//kernel operators
HypreParMatrix *P_d_HSkewDiv_Hdiv;
HypreParMatrix *P_H1_HDivSkew;
HypreParMatrix *H1_KernelMat;
HypreBoomerAMG *amgH1_Kernel;
//"image" operators
HypreParMatrix *P_H1_Hdiv;
HypreParMatrix *H1_ImageMat;
HypreBoomerAMG *amgH1_Image;
HypreParMatrix *HDivSkewMat;
HypreSmoother * smootherdiv;
HypreSmoother * smootherDivSkew;
CGSolver *pcgKernel;
CGSolver *pcgImage;
Vector *f;
Vector *fKernel, *uKernel;
Vector *fImage, *uImage;
Vector *fDivSkew, *uDivSkew;
FiniteElementCollection* fecHDivSkewKernel;
ParFiniteElementSpace *HDivSkewKernelFESpace;
bool exactSolves;
public:
~div4dPrec()
{
delete pcgImage;
delete pcgKernel;
delete uDivSkew, fDivSkew, uImage, fImage, uKernel, fKernel, f;
delete smootherDivSkew;
delete HDivSkewMat;
delete P_d_HSkewDiv_Hdiv;
delete P_H1_Hdiv;
delete P_H1_HDivSkew;
delete amgH1_Image, H1_ImageMat;
delete amgH1_Kernel, H1_KernelMat;
delete smootherdiv;
delete HDivSkewKernelFESpace;
delete fecHDivSkewKernel;
}
div4dPrec(HypreParMatrix *AUser, ParFiniteElementSpace *fespaceUser,
Coefficient *alpha, Coefficient *beta, const Array<int> &essBnd,
int orderKernel=1, bool exactSolvesUser=false)
{
A = AUser;
fespace = fespaceUser;
alpha_ = alpha;
beta_ = beta;
ParMesh *pmesh = fespace->GetParMesh();
int dim = pmesh->Dimension();
exactSolves = exactSolvesUser;
int orderIm=1; //H1 --> H(div)
int orderKer=orderKernel; //DivSkew V --> H(div)
smootherdiv = new HypreSmoother(*A, 16, 3);
Array<int> Hdiv_essDof(fespace->GetVSize()); Hdiv_essDof = 0;
fespace->GetEssentialVDofs(essBnd, Hdiv_essDof);
//setup the H1 FESpace for the kernel
FiniteElementCollection* fecH1Kernel;
if (orderKer==1) { fecH1Kernel = new LinearFECollection; }
else { fecH1Kernel = new QuadraticFECollection; }
ParFiniteElementSpace *H1KernelFESpace = new ParFiniteElementSpace(pmesh,
fecH1Kernel, 6, Ordering::byVDIM);
Array<int> H1Kernel_essDof(H1KernelFESpace->GetVSize()); H1Kernel_essDof = 0;
H1KernelFESpace->GetEssentialVDofs(essBnd, H1Kernel_essDof);
//setup the H(DivSkew) FESpace for the kernel
if (orderKer==1) { fecHDivSkewKernel = new DivSkew1_4DFECollection; }
// else fecHDivSkewKernel = new DivSkewFull1_4DFECollection;
HDivSkewKernelFESpace = new ParFiniteElementSpace(pmesh, fecHDivSkewKernel);
Array<int> HDivSkewKernel_essDof(HDivSkewKernelFESpace->GetVSize());
HDivSkewKernel_essDof = 0;
HDivSkewKernelFESpace->GetEssentialVDofs(essBnd, HDivSkewKernel_essDof);
//setup the FESpace for the H1 injection
FiniteElementCollection* fecH1Vec;
if (orderIm==1) { fecH1Vec = new LinearFECollection; }
else { fecH1Vec = new QuadraticFECollection; }
ParFiniteElementSpace *H1_ImageFESpace = new ParFiniteElementSpace(pmesh,
fecH1Vec, dim, Ordering::byVDIM);
Array<int> H1Image_essDof(H1_ImageFESpace->GetVSize()); H1Image_essDof = 0;
H1_ImageFESpace->GetEssentialVDofs(essBnd, H1Image_essDof);
//setup the H1 preconditioner for the kernel
ParBilinearForm* H1Varf = new ParBilinearForm(H1KernelFESpace);
// H1Varf->AddDomainIntegrator(new VectorDiffusionIntegrator(*alpha_, 6));
// H1Varf->AddDomainIntegrator(new VectorMassIntegrator(6, beta_));
H1Varf->AddDomainIntegrator(new VectorDiffusionIntegrator(*beta_, 6));
H1Varf->Assemble();
H1Varf->Finalize();
SparseMatrix &matH1(H1Varf->SpMat());
for (int dof=0; dof<H1Kernel_essDof.Size(); dof++) if (H1Kernel_essDof[dof]<0) { matH1.EliminateRowCol(dof); }
H1_KernelMat = H1Varf->ParallelAssemble();
delete H1Varf;
amgH1_Kernel = new HypreBoomerAMG(*H1_KernelMat);
amgH1_Kernel->SetSystemsOptions(6);
//setup the H1 preconditioner for the image
ParBilinearForm* H1VecVarf = new ParBilinearForm(H1_ImageFESpace);
H1VecVarf->AddDomainIntegrator(new VectorDiffusionIntegrator(*alpha_));
H1VecVarf->AddDomainIntegrator(new VectorMassIntegrator(-1, beta_));
H1VecVarf->Assemble();
H1VecVarf->Finalize();
SparseMatrix &matH1Vec(H1VecVarf->SpMat());
for (int dof=0; dof<H1Image_essDof.Size(); dof++) if (H1Image_essDof[dof]<0) { matH1Vec.EliminateRowCol(dof); }
H1_ImageMat = H1VecVarf->ParallelAssemble();
delete H1VecVarf;
amgH1_Image = new HypreBoomerAMG(*H1_ImageMat);
amgH1_Image->SetSystemsOptions(dim);
//setup the injection of H1 into H(DivSkew)
ParDiscreteLinearOperator *disInterpolIm = new ParDiscreteLinearOperator(
H1KernelFESpace, HDivSkewKernelFESpace);
disInterpolIm->AddDomainInterpolator(new IdentityInterpolator);
disInterpolIm->Assemble();
disInterpolIm->Finalize();
SparseMatrix* smatIDIm = &(disInterpolIm->SpMat());
smatIDIm->EliminateCols(H1Kernel_essDof);
for (int dof=0; dof<HDivSkewKernel_essDof.Size();
dof++) if (HDivSkewKernel_essDof[dof]<0) { smatIDIm->EliminateRow(dof); }
P_H1_HDivSkew = disInterpolIm->ParallelAssemble();
delete disInterpolIm;
//setup the injection of H1 into H(div)
ParDiscreteLinearOperator *disInterpol = new ParDiscreteLinearOperator(
H1_ImageFESpace, fespace);
disInterpol->AddDomainInterpolator(new IdentityInterpolator);
disInterpol->Assemble();
disInterpol->Finalize();
SparseMatrix* smatID = &(disInterpol->SpMat());
smatID->EliminateCols(H1Image_essDof);
for (int dof=0; dof<Hdiv_essDof.Size(); dof++) if (Hdiv_essDof[dof]<0) { smatID->EliminateRow(dof); }
P_H1_Hdiv = disInterpol->ParallelAssemble();
delete disInterpol;
//setup the injection of the DivSkew(H(DivSkew)) into H(div)
ParDiscreteLinearOperator *disDivSkew = new ParDiscreteLinearOperator(
HDivSkewKernelFESpace, fespace);
disDivSkew->AddDomainInterpolator(new DivSkewInterpolator);
disDivSkew->Assemble();
disDivSkew->Finalize();
SparseMatrix* smatDivSkew= &(disDivSkew->SpMat());
smatDivSkew->EliminateCols(HDivSkewKernel_essDof);
for (int dof=0; dof<Hdiv_essDof.Size(); dof++) if (Hdiv_essDof[dof]<0) { smatDivSkew->EliminateRow(dof); }
P_d_HSkewDiv_Hdiv = disDivSkew->ParallelAssemble();
delete disDivSkew;
//setup the smoother for H(DivSkew)
ParBilinearForm *a_HDivSkew = new ParBilinearForm(HDivSkewKernelFESpace);
// a_HDivSkew->AddDomainIntegrator(new DivSkewDivSkewIntegrator(*alpha_));
// a_HDivSkew->AddDomainIntegrator(new VectorFE_DivSkewMassIntegrator(*beta_));
a_HDivSkew->AddDomainIntegrator(new DivSkewDivSkewIntegrator(*beta_));
a_HDivSkew->Assemble();
a_HDivSkew->Finalize();
SparseMatrix &matHDivSkew(a_HDivSkew->SpMat());
for (int dof=0; dof<HDivSkewKernel_essDof.Size();
dof++) if (HDivSkewKernel_essDof[dof]<0) { matHDivSkew.EliminateRowCol(dof); }
HDivSkewMat = a_HDivSkew->ParallelAssemble();
delete a_HDivSkew;
smootherDivSkew = new HypreSmoother(*HDivSkewMat, 16, 3);
f = new Vector(fespace->GetTrueVSize());
fKernel = new Vector(H1KernelFESpace->GetTrueVSize());
uKernel = new Vector(H1KernelFESpace->GetTrueVSize());
fImage = new Vector(H1_ImageFESpace->GetTrueVSize());
uImage = new Vector(H1_ImageFESpace->GetTrueVSize());
fDivSkew = new Vector(HDivSkewKernelFESpace->GetTrueVSize());
uDivSkew = new Vector(HDivSkewKernelFESpace->GetTrueVSize());
amgH1_Kernel->Mult(*fKernel, *uKernel);
amgH1_Image->Mult(*fImage, *uImage);
pcgKernel = new CGSolver(MPI_COMM_WORLD);
pcgKernel->SetOperator(*H1_KernelMat);
pcgKernel->SetPreconditioner(*amgH1_Kernel);
pcgKernel->SetRelTol(1e-16);
pcgKernel->SetMaxIter(100000000);
pcgKernel->SetPrintLevel(-2);
pcgImage = new CGSolver(MPI_COMM_WORLD);
pcgImage->SetOperator(*H1_ImageMat);
pcgImage->SetPreconditioner(*amgH1_Image);
pcgImage->SetRelTol(1e-16);
pcgImage->SetMaxIter(100000000);
pcgImage->SetPrintLevel(-2);
delete H1_ImageFESpace;
delete H1KernelFESpace;
delete fecH1Kernel;
delete fecH1Vec;
}
void setExactSolve(bool exSol)
{
exactSolves = exSol;
}
virtual void Mult(const Vector &x, Vector &y) const
{
smootherdiv->Mult(x,y);
P_H1_Hdiv->MultTranspose(x,*fImage);
*uImage = 0.0;
if (exactSolves) { pcgImage->Mult(*fImage, *uImage); }
else { amgH1_Image->Mult(*fImage, *uImage); }
P_H1_Hdiv->Mult(1.0, *uImage, 1.0, y);
*uDivSkew = 0.0;
P_d_HSkewDiv_Hdiv->MultTranspose(x,*fDivSkew);
smootherDivSkew->Mult(*fDivSkew, *uDivSkew);
P_H1_HDivSkew->MultTranspose(*fDivSkew,*fKernel);
*uKernel = 0.0;
if (exactSolves) { pcgKernel->Mult(*fKernel, *uKernel); }
else { amgH1_Kernel->Mult(*fKernel, *uKernel); }
P_H1_HDivSkew->Mult(1.0, *uKernel, 1.0, *uDivSkew);
P_d_HSkewDiv_Hdiv->Mult(1.0, *uDivSkew, 1.0, y);
}
virtual void SetOperator(const Operator &op) {};
};
int main(int argc, char *argv[])
{
// 1. Initialize MPI.
int num_procs, myid;
MPI_Init(&argc, &argv);
MPI_Comm_size(MPI_COMM_WORLD, &num_procs);
MPI_Comm_rank(MPI_COMM_WORLD, &myid);
bool verbose = (myid==0);
// 2. Parse command-line options.
const char *mesh_file = "../data/star.mesh";
int order = 1;
bool set_bc = true;
bool static_cond = false;
bool hybridization = false;
bool visualization = 1;
int sequ_ref_levels = 0;
int par_ref_levels = 0;
double tol = 1e-6;
double coeffWeight = 1.0;
bool spe10Coeff = false;
bool exactH1Solver = false;
bool standardCG = true;
int NExpo = 8;
int weightStart = -NExpo;
int weightEnd = NExpo;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree).");
args.AddOption(&sequ_ref_levels, "-sr", "--seqrefinement",
"Number of sequential refinement steps.");
args.AddOption(&par_ref_levels, "-pr", "--parrefinement",
"Number of parallel refinement steps.");
args.AddOption(&set_bc, "-bc", "--impose-bc", "-no-bc", "--dont-impose-bc",
"Impose or not essential boundary conditions.");
args.AddOption(&freq, "-f", "--frequency", "Set the frequency for the exact"
" solution.");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.AddOption(&hybridization, "-hb", "--hybridization", "-no-hb",
"--no-hybridization", "Enable hybridization.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&tol, "-tol", "--tol",
"A parameter.");
args.AddOption(&coeffWeight, "-c", "--coeffMass",
"the weight for the mass term.");
args.AddOption(&exactH1Solver, "-exH1Sol", "--exactH1Solver", "-H1prec",
"--H1preconditioner",
"Use exact H1 solvers for the preconditioner.");
args.AddOption(&spe10Coeff, "-spe10", "--useSPE10Coeff", "-constCoeff",
"--constCoeff",
"Switch between the coefficients for the mass bilinear form.");
args.AddOption(&standardCG, "-sCG", "--stdCG", "-rCG", "--resCG",
"Switch between standard PCG or recompute residuals in every step and use the residuals itself for the stopping criteria.");
args.AddOption(&weightStart, "-ws", "--weightStart",
"the exponent for the starting weight (for the mass term).");
args.AddOption(&weightEnd, "-we", "--weightEnd",
"the exponent for the weight at the end (for the mass term).");
args.Parse();
if (!args.Good())
{
if (myid == 0)
{
args.PrintUsage(cout);
}
MPI_Finalize();
return 1;
}
if (myid == 0)
{
args.PrintOptions(cout);
}
kappa = freq * M_PI;
// 3. Read the (serial) mesh from the given mesh file on all processors. We
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
// and volume, as well as periodic meshes with the same code.
Mesh *mesh = new Mesh(mesh_file, 1, 1);
int dim = mesh->Dimension();
int sdim = mesh->SpaceDimension();
// 4. Refine the serial mesh on all processors to increase the resolution. In
// this example we do 'ref_levels' of uniform refinement. We choose
// 'ref_levels' to be the largest number that gives a final mesh with no
// more than 1,000 elements.
{
for (int l = 0; l < sequ_ref_levels; l++)
{
mesh->UniformRefinement();
}
}
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted. Tetrahedral
// meshes need to be reoriented before we can define high-order Nedelec
// spaces on them (this is needed in the ADS solver below).
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
delete mesh;
{
for (int l = 0; l < par_ref_levels; l++)
{
pmesh->UniformRefinement();
}
}
pmesh->ReorientTetMesh();
// 6. Define a parallel finite element space on the parallel mesh. Here we
// use the Raviart-Thomas finite elements of the specified order.
FiniteElementCollection *fec;
if (dim==4) { fec = new RT0_4DFECollection; }
else { fec = new RT_FECollection(order-1, dim); }
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
HYPRE_Int size = fespace->GlobalTrueVSize();
if (myid == 0)
{
cout << "Number of finite element unknowns: " << size << endl;
}
// 7. Determine the list of true (i.e. parallel conforming) essential
// boundary dofs. In this example, the boundary conditions are defined
// by marking all the boundary attributes from the mesh as essential
// (Dirichlet) and converting them to a list of true dofs.
Array<int> ess_tdof_list;
Array<int> ess_bdr(pmesh->bdr_attributes.Max());
ess_bdr = set_bc ? 1 : 0;
if (pmesh->bdr_attributes.Size())
{
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// 8. Set up the parallel linear form b(.) which corresponds to the
// right-hand side of the FEM linear system, which in this case is
// (f,phi_i) where f is given by the function f_exact and phi_i are the
// basis functions in the finite element fespace.
// 9. Define the solution vector x as a parallel finite element grid function
// corresponding to fespace. Initialize x by projecting the exact
// solution. Note that only values from the boundary faces will be used
// when eliminating the non-homogeneous boundary condition to modify the
// r.h.s. vector b.
ParGridFunction x(fespace);
VectorFunctionCoefficient F(sdim, F_exact);
for (int expo=weightStart; expo<=weightEnd; expo++)
{
double weight = pow(10.0,expo);
kappa = weight;
x.ProjectCoefficient(F);
VectorFunctionCoefficient f(sdim, f_exact);
ParLinearForm *b = new ParLinearForm(fespace);
b->AddDomainIntegrator(new VectorFEDomainLFIntegrator(f));
b->Assemble();
// 10. Set up the parallel bilinear form corresponding to the H(div)
// diffusion operator grad alpha div + beta I, by adding the div-div and
// the mass domain integrators.
// std::string permFile = "spe_perm.dat";
// InversePermeabilityFunction::ReadPermeabilityFile(permFile, MPI_COMM_WORLD);
Coefficient *alpha = new ConstantCoefficient(1.0);
Coefficient *beta;
// if(spe10Coeff) beta = new FunctionCoefficient(InversePermeabilityFunction::Norm2Permeability);
// else
beta = new ConstantCoefficient(weight);
ParBilinearForm *a = new ParBilinearForm(fespace);
a->AddDomainIntegrator(new DivDivIntegrator(*alpha));
a->AddDomainIntegrator(new VectorFEMassIntegrator(*beta));
// 11. Assemble the parallel bilinear form and the corresponding linear
// system, applying any necessary transformations such as: parallel
// assembly, eliminating boundary conditions, applying conforming
// constraints for non-conforming AMR, static condensation,
// hybridization, etc.
FiniteElementCollection *hfec = NULL;
ParFiniteElementSpace *hfes = NULL;
if (static_cond)
{
a->EnableStaticCondensation();
}
else if (hybridization)
{
hfec = new DG_Interface_FECollection(order-1, dim);
hfes = new ParFiniteElementSpace(pmesh, hfec);
a->EnableHybridization(hfes, new NormalTraceJumpIntegrator(),
ess_tdof_list);
}
a->Assemble();
HypreParMatrix A;
Vector B, X;
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
HYPRE_Int glob_size = A.GetGlobalNumRows();
if (myid == 0)
{
cout << "Size of linear system: " << glob_size << endl;
}
// 12. Define and apply a parallel PCG solver for A X = B with the 2D AMS or
// the 3D ADS preconditioners from hypre. If using hybridization, the
// system is preconditioned with hypre's BoomerAMG.
Solver *prec = NULL;
if (hybridization) { prec = new HypreBoomerAMG(A); }
else
{
ParFiniteElementSpace *prec_fespace =
(a->StaticCondensationIsEnabled() ? a->SCParFESpace() : fespace);
if (dim == 2) { prec = new HypreAMS(A, prec_fespace); }
else if (dim==3) { prec = new HypreADS(A, prec_fespace); }
else if (dim==4) { prec = new div4dPrec(&A, fespace, alpha, beta, ess_bdr, order, exactH1Solver); }
else { prec = NULL; }
}
int iter = -1;
if (standardCG)
{
IterativeSolver *pcg = new CGSolver(MPI_COMM_WORLD);
pcg->SetOperator(A);
pcg->SetRelTol(tol);
pcg->SetMaxIter(500);
pcg->SetPrintLevel(1);
pcg->SetPreconditioner(*prec);
pcg->Mult(B, X);
iter = pcg->GetNumIterations();
delete pcg;
}
else
{
HyprePCG *pcg = new HyprePCG(A);
pcg->SetTol(tol);
pcg->SetMaxIter(5000);
pcg->SetResidualConvergenceOptions(1,tol);
pcg->SetPrintLevel(2);
// pcg->SetPreconditioner(*prec);
pcg->Mult(B, X);
pcg->GetNumIterations(iter);
delete pcg;
}
if (myid==0)
{
cout << "Weigth: " << weight << " " << iter << endl;
int *iters = LoadIterations(10, 2*NExpo+1);
putIterationsInArray(iter, sequ_ref_levels+par_ref_levels, expo+NExpo,
2*NExpo+1, iters);
WriteIterations(iters, 10, 2*NExpo+1);
}
// 13. Recover the parallel grid function corresponding to X. This is the
// local finite element solution on each processor.
a->RecoverFEMSolution(X, *b, x);
// 14. Compute and print the L^2 norm of the error.
{
double err = x.ComputeL2Error(F);
if (myid == 0)
{
cout << "\n|| F_h - F ||_{L^2} = " << err << '\n' << endl;
}
}
// 15. Save the refined mesh and the solution in parallel. This output can
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
// {
// ostringstream mesh_name, sol_name;
// mesh_name << "mesh." << setfill('0') << setw(6) << myid;
// sol_name << "sol." << setfill('0') << setw(6) << myid;
//
// ofstream mesh_ofs(mesh_name.str().c_str());
// mesh_ofs.precision(8);
// pmesh->Print(mesh_ofs);
//
// ofstream sol_ofs(sol_name.str().c_str());
// sol_ofs.precision(8);
// x.Save(sol_ofs);
// }
// 16. Send the solution by socket to a GLVis server.
// if (visualization)
// {
// char vishost[] = "localhost";
// int visport = 19916;
// socketstream sol_sock(vishost, visport);
// sol_sock << "parallel " << num_procs << " " << myid << "\n";
// sol_sock.precision(8);
// sol_sock << "solution\n" << *pmesh << x << flush;
// }
if (prec!=NULL) { delete prec; }
delete hfes;
delete hfec;
delete a;
delete alpha;
delete beta;
delete b;
}
// 17. Free the used memory.
delete fespace;
delete fec;
delete pmesh;
MPI_Finalize();
return 0;
}
// The exact solution (for non-surface meshes)
void F_exact(const Vector &p, Vector &F)
{
int dim = p.Size();
if (dim==4)
{
double s0 = sin(M_PI*p(0)), s1 = sin(M_PI*p(1)), s2 = sin(M_PI*p(2)),
s3 = sin(M_PI*p(3));
double c0 = cos(M_PI*p(0)), c1 = cos(M_PI*p(1)), c2 = cos(M_PI*p(2)),
c3 = cos(M_PI*p(3));
F(0) = c0 * s1 * s2 * s3;
F(1) = s0 * c1 * s2 * s3;
F(2) = s0 * s1 * c2 * s3;
F(3) = s0 * s1 * s2 * c3;
}
else
{
double x = p(0);
double y = p(1);
// double z = (dim == 3) ? p(2) : 0.0;
F(0) = cos(kappa*x)*sin(kappa*y);
F(1) = cos(kappa*y)*sin(kappa*x);
if (dim == 3)
{
F(2) = 0.0;
}
}
}
// The right hand side
void f_exact(const Vector &p, Vector &f)
{
int dim = p.Size();
if (dim==4)
{
double s0 = sin(M_PI*p(0)), s1 = sin(M_PI*p(1)), s2 = sin(M_PI*p(2)),
s3 = sin(M_PI*p(3));
double c0 = cos(M_PI*p(0)), c1 = cos(M_PI*p(1)), c2 = cos(M_PI*p(2)),
c3 = cos(M_PI*p(3));
f(0) = c0 * s1 * s2 * s3;
f(1) = s0 * c1 * s2 * s3;
f(2) = s0 * s1 * c2 * s3;
f(3) = s0 * s1 * s2 * c3;
f *= (kappa + 4.0 * M_PI*M_PI);
}
else
{
double x = p(0);
double y = p(1);
// double z = (dim == 3) ? p(2) : 0.0;
double temp = 1 + 2*kappa*kappa;
f(0) = temp*cos(kappa*x)*sin(kappa*y);
f(1) = temp*cos(kappa*y)*sin(kappa*x);
if (dim == 3)
{
f(2) = 0;
}
}
}
+2 -1
View File
@@ -27,7 +27,8 @@ SEQ_EXAMPLES = ex0 ex1 ex2 ex3 ex4 ex5 ex6 ex7 ex8 ex9 ex10 ex14 ex15 ex16 \
PAR_EXAMPLES = ex0p ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex8p ex9p ex10p ex11p \
ex12p ex13p ex14p ex15p ex16p ex17p ex18p ex19p ex20p ex21p ex22p ex24p \
ex25p ex26p ex27p ex28p ex29p ex30p ex31p ex32p ex33p ex34p ex35p ex36p \
ex37p ex39p ex40p
ex37p ex39p ex40p \
ex1p_4d ex3p_4d ex4D_DivSkew
SEQ_DEVICE_EXAMPLES = ex1 ex3 ex4 ex5 ex6 ex9 ex14 ex22 ex24 ex25 ex26 ex34
PAR_DEVICE_EXAMPLES = ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex14p \
ex22p ex24p ex25p ex26p ex34p ex35p
+352
View File
@@ -0,0 +1,352 @@
/*
* spe10_coeff.cpp
*
* Created on: Aug 23, 2017
* Author: neumueller
*/
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
class InversePermeabilityFunction
{
public:
enum SliceOrientation {NONE, XY, XZ, YZ};
static void SetNumberCells(int Nx_, int Ny_, int Nz_);
static void SetMeshSizes(double hx, double hy, double hz);
static void Set2DSlice(SliceOrientation o, int npos );
static void ReadPermeabilityFile(const std::string fileName);
#ifdef MFEM_USE_MPI
static void ReadPermeabilityFile(const std::string fileName, MPI_Comm comm);
#endif
static void SetConstantInversePermeability(double ipx, double ipy, double ipz);
template<class F>
static void Transform(const F & f)
{
for (int i = 0; i < 3*Nx*Ny*Nz; ++i)
{
inversePermeability[i] = f(inversePermeability[i]);
}
}
static void InversePermeability(const Vector & x, Vector & val);
static double PermeabilityXY(Vector &x);
static void NegativeInversePermeability(const Vector & x, Vector & val);
static void Permeability(const Vector & x, Vector & val);
static double Norm2Permeability(const Vector & x);
static double Norm2InversePermeability(const Vector & x);
static double Norm1InversePermeability(const Vector & x);
static double NormInfInversePermeability(const Vector & x);
static double InvNorm2(const Vector & x);
static double InvNorm1(const Vector & x);
static double InvNormInf(const Vector & x);
static void ClearMemory();
private:
static int Nx;
static int Ny;
static int Nz;
static double hx;
static double hy;
static double hz;
static double * inversePermeability;
static SliceOrientation orientation;
static int npos;
};
void InversePermeabilityFunction::SetNumberCells(int Nx_, int Ny_, int Nz_)
{
Nx = Nx_;
Ny = Ny_;
Nz = Nz_;
}
void InversePermeabilityFunction::SetMeshSizes(double hx_, double hy_,
double hz_)
{
hx = hx_;
hy = hy_;
hz = hz_;
}
void InversePermeabilityFunction::Set2DSlice(SliceOrientation o, int npos_ )
{
orientation = o;
npos = npos_;
}
void InversePermeabilityFunction::SetConstantInversePermeability(double ipx,
double ipy, double ipz)
{
int compSize = Nx*Ny*Nz;
int size = 3*compSize;
inversePermeability = new double [size];
double *ip = inversePermeability;
for (int i(0); i < compSize; ++i)
{
ip[i] = ipx;
ip[i+compSize] = ipy;
ip[i+2*compSize] = ipz;
}
}
#ifdef MFEM_USE_MPI
void InversePermeabilityFunction::ReadPermeabilityFile(const std::string
fileName, MPI_Comm comm)
{
int num_procs, myid;
MPI_Comm_size(comm, &num_procs);
MPI_Comm_rank(comm, &myid);
StopWatch chrono;
chrono.Start();
if (myid == 0)
{
ReadPermeabilityFile(fileName);
}
else
{
inversePermeability = new double [3*Nx*Ny*Nz];
}
chrono.Stop();
if (myid==0)
{
std::cout<<"Permeability file read in " << chrono.RealTime() << ".s \n";
}
chrono.Clear();
chrono.Start();
MPI_Bcast(inversePermeability, 3*Nx*Ny*Nz, MPI_DOUBLE, 0, comm);
chrono.Stop();
if (myid==0)
{
std::cout<<"Permeability field distributed in " << chrono.RealTime() <<
".s \n";
}
}
#endif
void InversePermeabilityFunction::ReadPermeabilityFile(const std::string
fileName)
{
std::ifstream permfile(fileName.c_str());
if (!permfile.is_open())
{
std::cout << "Error in opening file " << fileName << "\n";
mfem_error("File do not exists");
}
inversePermeability = new double [3*Nx*Ny*Nz];
double *ip = inversePermeability;
double tmp;
for (int l = 0; l < 3; l++)
{
for (int k = 0; k < Nz; k++)
{
for (int j = 0; j < Ny; j++)
{
for (int i = 0; i < Nx; i++)
{
permfile >> *ip;
*ip = 1./(*ip);
ip++;
}
for (int i = 0; i < 60-Nx; i++)
{
permfile >> tmp; // skip unneeded part
}
}
for (int j = 0; j < 220-Ny; j++)
for (int i = 0; i < 60; i++)
{
permfile >> tmp; // skip unneeded part
}
}
if (l < 2) // if not processing Kz, skip unneeded part
for (int k = 0; k < 85-Nz; k++)
for (int j = 0; j < 220; j++)
for (int i = 0; i < 60; i++)
{
permfile >> tmp;
}
}
}
void InversePermeabilityFunction::InversePermeability(const Vector & x,
Vector & val)
{
val.SetSize(3);
unsigned int i,j,k;
switch (orientation)
{
case NONE:
i = Nx-1-(int)floor(x[0]/hx/(1.+3e-16));
j = (int)floor(x[1]/hy/(1.+3e-16));
k = Nz-1-(int)floor(x[2]/hz/(1.+3e-16));
break;
case XY:
i = Nx-1-(int)floor(x[0]/hx/(1.+3e-16));
j = (int)floor(x[1]/hy/(1.+3e-16));
k = npos;
break;
case XZ:
i = Nx-1-(int)floor(x[0]/hx/(1.+3e-16));
j = npos;
k = Nz-1-(int)floor(x[2]/hz/(1.+3e-16));
break;
case YZ:
i = npos;
j = (int)floor(x[1]/hy/(1.+3e-16));
k = Nz-1-(int)floor(x[2]/hz/(1.+3e-16));
break;
default:
{
mfem_error("InversePermeabilityFunction::InversePermeability");
}
}
int NMax = 3*Nx*Ny*Nz-1;
if (Ny*Nx*k + Nx*j + i>NMax || Ny*Nx*k + Nx*j + i + Nx*Ny*Nz>NMax ||
Ny*Nx*k + Nx*j + i + 2*Nx*Ny*Nz>NMax)
{
cout << " the indicies are wrong!" << endl;
cout << i << " " << j << " " << k << endl;
}
val[0] = inversePermeability[Ny*Nx*k + Nx*j + i];
val[1] = inversePermeability[Ny*Nx*k + Nx*j + i + Nx*Ny*Nz];
if (orientation == NONE)
{
val[2] = inversePermeability[Ny*Nx*k + Nx*j + i + 2*Nx*Ny*Nz];
}
}
double InversePermeabilityFunction::PermeabilityXY(Vector &x)
{
unsigned int i,j,k;
i = Nx-1-(int)floor(x[0]/hx/(1.+3e-16));
j = (int)floor(x[1]/hy/(1.+3e-16));
k = npos;
return 1./inversePermeability[Ny*Nx*k + Nx*j + i];
}
void InversePermeabilityFunction::NegativeInversePermeability(const Vector & x,
Vector & val)
{
InversePermeability(x,val);
val *= -1.;
}
void InversePermeabilityFunction::Permeability(const Vector & x, Vector & val)
{
InversePermeability(x,val);
for (double * it = val.GetData(), *end = val.GetData()+val.Size(); it != end;
++it )
{
(*it) = 1./ (*it);
}
}
double InversePermeabilityFunction::Norm2Permeability(const Vector & x)
{
Vector val(3);
Permeability(x,val);
return val.Norml2();
}
double InversePermeabilityFunction::Norm2InversePermeability(const Vector & x)
{
Vector val(3);
InversePermeability(x,val);
return val.Norml2();
}
double InversePermeabilityFunction::Norm1InversePermeability(const Vector & x)
{
Vector val(3);
InversePermeability(x,val);
return val.Norml1();
}
double InversePermeabilityFunction::NormInfInversePermeability(const Vector & x)
{
Vector val(3);
InversePermeability(x,val);
return val.Normlinf();
}
double InversePermeabilityFunction::InvNorm2(const Vector & x)
{
Vector val(3);
InversePermeability(x,val);
return 1./val.Norml2();
}
double InversePermeabilityFunction::InvNorm1(const Vector & x)
{
Vector val(3);
InversePermeability(x,val);
return 1./val.Norml1();
}
double InversePermeabilityFunction::InvNormInf(const Vector & x)
{
Vector val(3);
InversePermeability(x,val);
return 1./val.Normlinf();
}
void InversePermeabilityFunction::ClearMemory()
{
delete[] inversePermeability;
}
int InversePermeabilityFunction::Nx(60);
int InversePermeabilityFunction::Ny(220);
int InversePermeabilityFunction::Nz(85);
double InversePermeabilityFunction::hx(20);
double InversePermeabilityFunction::hy(10);
double InversePermeabilityFunction::hz(2);
double * InversePermeabilityFunction::inversePermeability(NULL);
InversePermeabilityFunction::SliceOrientation
InversePermeabilityFunction::orientation( InversePermeabilityFunction::NONE );
int InversePermeabilityFunction::npos(-1);
+7 -2
View File
@@ -1833,7 +1833,6 @@ void MixedBilinearForm::FormRectangularSystemMatrix(
const Array<int> &trial_tdof_list,
const Array<int> &test_tdof_list,
OperatorHandle &A)
{
if (ext)
{
@@ -1912,8 +1911,14 @@ void MixedBilinearForm::FormRectangularLinearSystem(
B.SetSubVector(test_tdof_list, 0.0);
}
void MixedBilinearForm::Update()
void MixedBilinearForm::Update(FiniteElementSpace *ntr_fes,
FiniteElementSpace *nte_fes)
{
if ((ntr_fes && nte_fes) && (ntr_fes != trial_fes || nte_fes != test_fes))
{
trial_fes = ntr_fes;
test_fes = nte_fes;
}
delete mat;
mat = NULL;
delete mat_e;
+11 -2
View File
@@ -706,6 +706,10 @@ public:
*/
void SetDiagonalPolicy(DiagonalPolicy policy);
void SetIntegratorOwnership(int _extern_bfs)
{
extern_bfs = _extern_bfs;
}
/// Indicate that integrators are not owned by the BilinearForm
void UseExternalIntegrators() { extern_bfs = 1; }
@@ -1068,8 +1072,13 @@ public:
A.MakeRef(*A_ptr);
}
/// Must be called after making changes to #trial_fes or #test_fes.
void Update();
virtual void Update(FiniteElementSpace *ntr_fes = NULL,
FiniteElementSpace *nte_fes = NULL);
void SetIntegratorOwnership(int _extern_bfs)
{
extern_bfs = _extern_bfs;
}
/// Return the trial FE space associated with the BilinearForm.
FiniteElementSpace *TrialFESpace() { return trial_fes; }
+123 -2
View File
@@ -1999,7 +1999,11 @@ void CurlCurlIntegrator::AssembleElementMatrix
{
int nd = el.GetDof();
dim = el.GetDim();
int dimc = el.GetCurlDim();
// in main
// int dimc = el.GetCurlDim();
// Taken from 4d_dev:
int dimc = (dim == 3) ? 3 : 1;
if (dim==4) { dimc = 6; }
real_t w;
#ifdef MFEM_THREAD_SAFE
@@ -2036,8 +2040,43 @@ void CurlCurlIntegrator::AssembleElementMatrix
Trans.SetIntPoint (&ip);
if (dim ==4)
{
DenseMatrix tSh(4,4);
DenseMatrix trShTemp(4,4);
DenseMatrix J = Trans.Jacobian();
DenseMatrix invJ(4,4); CalcInverse(J, invJ);
DenseMatrix invJtr(invJ); invJtr.Transpose();
el.CalcCurlShape(ip, curlshape);
for (int dof=0; dof<nd; dof++)
{
tSh = 0.; trShTemp = 0.;
tSh(0,1) = curlshape(dof,0); tSh(0,2) = curlshape(dof,1);
tSh(0,3) = curlshape(dof,2);
tSh(1,0) = -curlshape(dof,0);
tSh(1,2) = curlshape(dof,3); tSh(1,3) = curlshape(dof,4);
tSh(2,0) = -curlshape(dof,1); tSh(2,1) = -curlshape(dof,3);
tSh(2,3) = curlshape(dof,5);
tSh(3,0) = -curlshape(dof,2); tSh(3,1) = -curlshape(dof,4);
tSh(3,2) = -curlshape(dof,5);
Mult(tSh, invJ, trShTemp);
Mult(invJtr, trShTemp, tSh);
curlshape_dFt(dof,0) = tSh(0,1);
curlshape_dFt(dof,1) = tSh(0,2);
curlshape_dFt(dof,2) = tSh(0,3);
curlshape_dFt(dof,3) = tSh(1,2);
curlshape_dFt(dof,4) = tSh(1,3);
curlshape_dFt(dof,5) = tSh(2,3);
}
}
else
el.CalcPhysCurlShape(Trans, curlshape_dFt);
w = ip.weight * Trans.Weight();
el.CalcPhysCurlShape(Trans, curlshape_dFt);
if (MQ)
{
@@ -3415,6 +3454,7 @@ void DGTraceIntegrator::AssembleFaceMatrix(const FiniteElement &el1,
}
}
}
// elmat.PrintMatlab(std::cout);
}
@@ -4555,4 +4595,85 @@ VectorInnerProductInterpolator::AssembleElementMatrix2(
ran_fe.Project(dom_shape_coeff, Trans, elmat_as_vec);
}
void HeatEquationIntegrator::AssembleElementMatrix
( const FiniteElement &el, ElementTransformation &Trans,
DenseMatrix &elmat )
{
int nd = el.GetDof();
int dim = el.GetDim();
int spaceDim = Trans.GetSpaceDim();
double w;
#ifdef MFEM_THREAD_SAFE
DenseMatrix dshape(nd,dim), dshapedxt(nd,spaceDim), invdfdx(dim,spaceDim);
Vector shape(nd), vec(nd);
#else
dshape.SetSize(nd,dim);
dshapedxt.SetSize(nd,spaceDim);
invdfdx.SetSize(dim,spaceDim);
shape.SetSize(nd);
dtshape.SetSize(nd);
#endif
elmat.SetSize(nd);
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
int order;
if (el.Space() == FunctionSpace::Pk)
{
order = 2*el.GetOrder() - 2;
}
else
// order = 2*el.GetOrder() - 2; // <-- this seems to work fine too
{
order = 2*el.GetOrder() + dim - 1;
}
if (el.Space() == FunctionSpace::rQk)
{
ir = &RefinedIntRules.Get(el.GetGeomType(), order);
}
else
{
ir = &IntRules.Get(el.GetGeomType(), order);
}
}
elmat = 0.0;
for (int i = 0; i < ir->GetNPoints(); i++)
{
const IntegrationPoint &ip = ir->IntPoint(i);
el.CalcShape(ip,shape);
el.CalcDShape(ip, dshape);
Trans.SetIntPoint(&ip);
w = Trans.Weight();
w *= ip.weight;
CalcInverse(Trans.Jacobian(), invdfdx);
Mult(dshape, invdfdx, dshapedxt);
dshapedxt.GetColumn(spaceDim - 1, dtshape); // d_t u
dshapedxt.SetCol(spaceDim - 1, 0.);
AddMult_a_VWt(w,shape,dtshape,elmat); // d_t u * v
if (!MQ)
{
if (Q)
{
w *= Q->Eval(Trans, ip);
}
AddMult_a_AAt(w, dshapedxt, elmat);
}
else
{
MQ->Eval(invdfdx, Trans, ip);
invdfdx *= w;
Mult(dshapedxt, invdfdx, dshape);
AddMultABt(dshape, dshapedxt, elmat);
}
}
}
}
+187 -1
View File
@@ -266,6 +266,9 @@ public:
Vector &flux, Vector *d_energy = NULL)
{ return 0.0; }
// I think this got deleted
// void SetIntRule(const IntegrationRule *ir) { IntRule = ir; }
/** @brief For bilinear forms on element faces, specifies if the normal
derivatives are needed on the faces or just the face restriction.
@@ -298,7 +301,6 @@ public:
*/
virtual void AddMultPAFaceNormalDerivatives(const Vector &x, const Vector &dxdn,
Vector &y, Vector &dydn) const;
virtual ~BilinearFormIntegrator() { }
};
@@ -3680,6 +3682,16 @@ public:
};
class DivSkewInterpolator : public DiscreteInterpolator
{
public:
virtual void AssembleElementMatrix2(const FiniteElement &dom_fe,
const FiniteElement &ran_fe,
ElementTransformation &Trans,
DenseMatrix &elmat)
{ ran_fe.ProjectDivSkew(dom_fe, Trans, elmat); }
};
/** Class for constructing the (local) discrete divergence matrix which can
be used as an integrator in a DiscreteLinearOperator object to assemble
the global discrete divergence matrix.
@@ -3811,5 +3823,179 @@ protected:
VectorCoefficient *VQ;
};
class DivSkewDivSkewIntegrator: public BilinearFormIntegrator
{
private:
DenseMatrix DivSkewshape, DivSkew_dFt;
Coefficient *Q;
public:
DivSkewDivSkewIntegrator() { Q = NULL; }
/// Construct a bilinear form integrator for Nedelec elements
DivSkewDivSkewIntegrator(Coefficient &q) : Q(&q) { }
/* Given a particular Finite Element, compute the
element DivSkew-DivSkew matrix elmat */
virtual void AssembleElementMatrix(const FiniteElement &el,
ElementTransformation &Trans,
DenseMatrix &elmat)
{
int nd = el.GetDof();
int dim = el.GetDim();
real_t w;
DivSkewshape.SetSize(nd,dim);
DivSkew_dFt.SetSize(nd,dim);
elmat.SetSize(nd);
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
int order = 2*el.GetOrder()+2;
ir = &IntRules.Get(el.GetGeomType(), order);
}
elmat = 0.0;
for (int i = 0; i < ir->GetNPoints(); i++)
{
const IntegrationPoint &ip = ir->IntPoint(i);
Trans.SetIntPoint (&ip);
el.CalcDivSkewShape(ip, DivSkewshape);
MultABt(DivSkewshape, Trans.Jacobian(), DivSkew_dFt);
DivSkew_dFt *= (1.0 / Trans.Weight());
w = ip.weight * fabs(Trans.Weight());
if (Q)
{
w *= Q->Eval(Trans, ip);
}
AddMult_a_AAt(w, DivSkew_dFt, elmat);
}
}
};
class VectorFE_DivSkewMassIntegrator: public BilinearFormIntegrator
{
private:
DenseMatrix shape;
Coefficient *Q;
public:
VectorFE_DivSkewMassIntegrator() { Q = NULL; }
/// Construct a bilinear form integrator for Nedelec elements
VectorFE_DivSkewMassIntegrator(Coefficient &q) : Q(&q) { }
/* Given a particular Finite Element, compute the
element curl-curl matrix elmat */
virtual void AssembleElementMatrix(const FiniteElement &el,
ElementTransformation &Trans,
DenseMatrix &elmat)
{
int nd = el.GetDof();
int dim = el.GetDim();
real_t w;
shape.SetSize(nd,dim*dim);
elmat.SetSize(nd);
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
int order = Trans.OrderW() + 2 * el.GetOrder();
ir = &IntRules.Get(el.GetGeomType(), order);
}
elmat = 0.0;
for (int i = 0; i < ir->GetNPoints(); i++)
{
const IntegrationPoint &ip = ir->IntPoint(i);
Trans.SetIntPoint (&ip);
w = ip.weight * fabs(Trans.Weight());
el.CalcVShape(Trans, shape);
if (Q)
{
w *= Q->Eval(Trans, ip);
}
AddMult_a_AAt(w, shape, elmat);
}
}
};
/** Class for integrating the bilinear form a(u,v) := (d_t u, v) + (Q grad_x u, grad_x v) where Q
can be a scalar or a matrix coefficient and grad_x is the gradient wrt to the spatial variables.
Here we use the space-time f.e. scheme by [Steinbach2015]. */
class HeatEquationIntegrator: public BilinearFormIntegrator
{
private:
Vector vec, pointflux, shape, dtshape;
#ifndef MFEM_THREAD_SAFE
DenseMatrix dshape, dshapedxt, invdfdx, mq;
DenseMatrix te_dshape, te_dshapedxt;
#endif
Coefficient *Q;
MatrixCoefficient *MQ;
public:
/// Construct a diffusion integrator with coefficient Q = 1
HeatEquationIntegrator() { Q = NULL; MQ = NULL; }
/// Construct a diffusion integrator with a scalar coefficient q
HeatEquationIntegrator (Coefficient &q) : Q(&q) { MQ = NULL; }
/// Construct a diffusion integrator with a matrix coefficient q
HeatEquationIntegrator (MatrixCoefficient &q) : MQ(&q) { Q = NULL; }
/** Given a particular Finite Element
computes the element stiffness matrix elmat. */
virtual void AssembleElementMatrix(const FiniteElement &el,
ElementTransformation &Trans,
DenseMatrix &elmat);
/** Given a trial and test Finite Element computes the element stiffness
matrix elmat. */
virtual void AssembleElementMatrix2(const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &Trans,
DenseMatrix &elmat)
{ mfem_error("HeatEquationIntegrator::AssembleElementMatrix2: not implemented!"); }
/// Perform the local action of the BilinearFormIntegrator
virtual void AssembleElementVector(const FiniteElement &el,
ElementTransformation &Tr,
const Vector &elfun, Vector &elvect)
{ mfem_error("HeatEquationIntegrator::AssembleElementVector: not implemented!"); }
virtual void ComputeElementFlux(const FiniteElement &el,
ElementTransformation &Trans,
Vector &u, const FiniteElement &fluxelem,
Vector &flux, int with_coef = 1)
{ mfem_error("HeatEquationIntegrator::ComputeElementFlux: not implemented!"); }
virtual double ComputeFluxEnergy(const FiniteElement &fluxelem,
ElementTransformation &Trans,
Vector &flux, Vector *d_energy = NULL)
{ mfem_error("HeatEquationIntegrator::ComputeFluxEnergy: not implemented!"); return -1;}
};
}
#endif
+8 -4
View File
@@ -129,8 +129,10 @@ real_t PWCoefficient::Eval(ElementTransformation &T,
real_t FunctionCoefficient::Eval(ElementTransformation & T,
const IntegrationPoint & ip)
{
real_t x[3];
Vector transip(x, 3);
// real_t x[Geometry::MaxDim];
// Vector transip(x, Geometry::MaxDim);
real_t x[4];
Vector transip(x, 4);
T.Transform(ip, transip);
@@ -366,8 +368,10 @@ void PositionVectorCoefficient::Eval(Vector &V, ElementTransformation &T,
void VectorFunctionCoefficient::Eval(Vector &V, ElementTransformation &T,
const IntegrationPoint &ip)
{
real_t x[3];
Vector transip(x, 3);
// real_t x[Geometry::MaxDim];
// Vector transip(x, Geometry::MaxDim);
real_t x[4];
Vector transip(x, 4);
T.Transform(ip, transip);
+6 -2
View File
@@ -180,7 +180,7 @@ int InverseElementTransformation::NewtonSolve(const Vector &pt,
const int dim = T->GetDimension();
const int sdim = T->GetSpaceDim();
IntegrationPoint xip, prev_xip;
real_t xd[3], yd[3], dxd[3], dx_norm = -1.0, err_phys, real_dx_norm = -1.0;
double xd[4], yd[4], dxd[4], dx_norm = -1.0, err_phys, real_dx_norm = -1.0;
Vector x(xd, dim), y(yd, sdim), dx(dxd, dim);
bool hit_bdr = false, prev_hit_bdr = false;
@@ -389,6 +389,8 @@ void IsoparametricTransformation::SetIdentityTransformation(
case Geometry::CUBE : FElem = &HexahedronFE; break;
case Geometry::PRISM : FElem = &WedgeFE; break;
case Geometry::PYRAMID : FElem = &PyramidFE; break;
case Geometry::PENTATOPE: FElem = &PentatopeFE; break;
case Geometry::TESSERACT: FElem = &TesseractFE; break;
default:
MFEM_ABORT("unknown Geometry::Type!");
}
@@ -543,7 +545,9 @@ void IsoparametricTransformation::Transform (const DenseMatrix &matrix,
void IntegrationPointTransformation::Transform (const IntegrationPoint &ip1,
IntegrationPoint &ip2)
{
real_t vec[3];
// real_t vec[Geometry::MaxDim];
real_t vec[4];
Vector v (vec, Transf.GetPointMat().Height());
Transf.Transform (ip1, v);
+4
View File
@@ -43,6 +43,10 @@ LinearWedgeFiniteElement WedgeFE;
// Defined here to ensure it is constructed before 'Geometries'.
LinearPyramidFiniteElement PyramidFE;
// Object declared in mesh/pentatope.hpp.
// Defined here to ensure it is constructed before 'Geometries'.
Linear4DFiniteElement PentatopeFE;
// Object declared in geom.hpp.
// Construct 'Geometries' after 'TriangleFE', 'TetrahedronFE', 'WedgeFE', and
// PyramidFE.
+93
View File
@@ -93,6 +93,13 @@ void FiniteElement::CalcPhysCurlShape(ElementTransformation &Trans,
}
}
void FiniteElement::CalcDivSkewShape(const IntegrationPoint &ip,
DenseMatrix &curl_shape) const
{
mfem_error ("FiniteElement::CalcDivSkewShape (ip, ...)\n"
" is not implemented for this class!");
}
void FiniteElement::GetFaceDofs(int face, int **dofs, int *ndofs) const
{
MFEM_ABORT("method is not overloaded");
@@ -179,6 +186,14 @@ void FiniteElement::ProjectDiv(
MFEM_ABORT("method is not implemented for this element");
}
void FiniteElement::ProjectDivSkew(
const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &DivSkew) const
{
mfem_error("FiniteElement::ProjectDivSkew(...) is not implemented for "
"this element!");
}
void FiniteElement::CalcPhysShape(ElementTransformation &Trans,
Vector &shape) const
{
@@ -1012,9 +1027,19 @@ void VectorFiniteElement::SetDerivMembers()
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
case H_DIV_SKEW:
deriv_type = DIV_SKEW;
deriv_range_type = VECTOR;
deriv_map_type = H_DIV;
break;
case H_CURL:
switch (dim)
{
case 4: // curl: 4D H_CURL -> 4D H_DIV(skew)
deriv_type = CURL;
deriv_range_type = MAT_SKEW;
deriv_map_type = H_DIV_SKEW;
break;
case 3: // curl: 3D H_CURL -> 3D H_DIV
deriv_type = CURL;
deriv_range_type = VECTOR;
@@ -1063,6 +1088,74 @@ void VectorFiniteElement::CalcVShape_ND(
Mult(vshape, Trans.InverseJacobian(), shape);
}
void VectorFiniteElement::CalcVShape_DivSkew (
ElementTransformation &Trans, DenseMatrix &shape) const
{
if (dim!=4) { return; }
MFEM_ASSERT(map_type == H_DIV_SKEW, "");
const DenseMatrix &J = Trans.Jacobian();
#ifdef MFEM_THREAD_SAFE
DenseMatrix vshape(dof, dim*dim);
DenseMatrix Jinv(J.Width(), J.Height());
#else
Jinv.SetSize(J.Width(), J.Height());
#endif
if (vshape.Width()!=dim*dim) { vshape.SetSize(dof,dim*dim); }
CalcVShape(Trans.GetIntPoint(), vshape);
CalcInverse(J, Jinv);
DenseMatrix invJtr(Jinv); invJtr.Transpose();
CalcVShape(Trans.GetIntPoint(), vshape);
DenseMatrix mat(dim,dim); mat = 0.0;
DenseMatrix tempMat(dim,dim);
for (int o=0; o<dof; o++)
{
// for(int ik=0; ik<dim; ik++)
// for(int jk=0; jk<dim; jk++)
// {
// mat(ik,jk) = vshape(o,dim*ik+jk);
// }
//
// Mult(mat, Jinv, tempMat);
// Mult(invJtr, tempMat, mat);
//
// for(int ik=0; ik<dim; ik++)
// for(int jk=0; jk<dim; jk++)
// {
// shape(o,dim*ik+jk) = mat(ik,jk);
// }
mat(0,0) = 0.0; mat(0,1) = vshape(o,11);
mat(0,2) = vshape(o,13); mat(0,3) = vshape(o,6);
mat(1,0) = vshape(o,14); mat(1,1) = 0.0;
mat(1,2) = vshape(o,3); mat(1,3) = vshape(o,8);
mat(2,0) = vshape(o,7); mat(2,1) = vshape(o,12); mat(2,2) = 0.0;
mat(2,3) = vshape(o,1);
mat(3,0) = vshape(o,9); mat(3,1) = vshape(o,2);
mat(3,2) = vshape(o,4); mat(3,3) = 0.0;
Mult(mat, Jinv, tempMat);
Mult(invJtr, tempMat, mat);
shape(o,0) = 0.0; shape(o,1) = mat(2,3); shape(o,2) = mat(3,1);
shape(o,3) = mat(1,2);
shape(o,4) = mat(3,2); shape(o,5) = 0.0; shape(o,6) = mat(0,3);
shape(o,7) = mat(2,0);
shape(o,8) = mat(1,3); shape(o,9) = mat(3,0); shape(o,10) = 0.0;
shape(o,11) = mat(0,1);
shape(o,12) = mat(2,1); shape(o,13) = mat(0,2); shape(o,14) = mat(1,0);
shape(o,15) = 0.0;
}
}
void VectorFiniteElement::Project_RT(
const real_t *nk, const Array<int> &d2n,
VectorCoefficient &vc, ElementTransformation &Trans, Vector &dofs) const
+18 -4
View File
@@ -259,7 +259,7 @@ protected:
public:
/// Enumeration for range_type and deriv_range_type
enum RangeType { UNKNOWN_RANGE_TYPE = -1, SCALAR, VECTOR };
enum RangeType { UNKNOWN_RANGE_TYPE = -1, SCALAR, VECTOR, MAT_SKEW };
/** @brief Enumeration for MapType: defines how reference functions are
mapped to physical space.
@@ -281,10 +281,11 @@ public:
$ u(x) = (1/w) \hat u(\hat x) $ */
H_DIV, /**< For vector fields; preserves surface integrals of the
normal component $ u(x) = (J/w) \hat u(\hat x) $ */
H_CURL /**< For vector fields; preserves line integrals of the
H_CURL, /**< For vector fields; preserves line integrals of the
tangential component
$ u(x) = J^{-t} \hat u(\hat x) $ (square J),
$ u(x) = J(J^t J)^{-1} \hat u(\hat x) $ (general J) */
H_DIV_SKEW
};
/** @brief Enumeration for DerivType: defines which derivative method
@@ -299,7 +300,8 @@ public:
NONE, ///< No derivatives implemented
GRAD, ///< Implements CalcDShape methods
DIV, ///< Implements CalcDivShape methods
CURL ///< Implements CalcCurlShape methods
CURL, ///< Implements CalcCurlShape methods
DIV_SKEW
};
/** @brief Construct FiniteElement with given
@@ -448,6 +450,10 @@ public:
virtual void CalcPhysCurlShape(ElementTransformation &Trans,
DenseMatrix &curl_shape) const;
virtual void CalcDivSkewShape(const IntegrationPoint &ip,
DenseMatrix &curl_shape) const;
/** @brief Get the dofs associated with the given @a face.
@a *dofs is set to an internal array of the local dofc on the
face, while *ndofs is set to the number of dofs on that face.
@@ -577,6 +583,10 @@ public:
ElementTransformation &Trans,
DenseMatrix &div) const;
virtual void ProjectDivSkew(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &DivSkew) const;
/** @brief Return a DofToQuad structure corresponding to the given
IntegrationRule using the given DofToQuad::Mode. */
/** See the documentation for DofToQuad for more details. */
@@ -812,7 +822,7 @@ private:
protected:
bool is_nodal;
#ifndef MFEM_THREAD_SAFE
mutable DenseMatrix JtJ;
mutable DenseMatrix JtJ, J, Jinv;
mutable DenseMatrix curlshape, curlshape_J;
#endif
void SetDerivMembers();
@@ -823,6 +833,10 @@ protected:
void CalcVShape_ND(ElementTransformation &Trans,
DenseMatrix &shape) const;
void CalcVShape_DivSkew(ElementTransformation &Trans,
DenseMatrix &shape) const;
/** @brief Project a vector coefficient onto the RT basis functions
@param nk Face normal vectors for this element type
@param d2n Offset into nk for each degree of freedom
File diff suppressed because it is too large Load Diff
+187
View File
@@ -450,6 +450,74 @@ public:
{ dofs = 0.0; dofs(vertex) = 1.0; }
};
/// Class for quad-linear FE on tesseract (4d element)
class QuadLinear4DFiniteElement : public NodalFiniteElement
{
public:
/// Construct a quad-linear FE on tesseract
QuadLinear4DFiniteElement();
/** virtual function which evaluates the values of all
shape functions at a given point ip and stores
them in the vector shape of dimension Dof (16) */
virtual void CalcShape(const IntegrationPoint &ip, Vector &shape) const;
/** virtual function which evaluates the values of all
partial derivatives of all shape functions at a given
point ip and stores them in the matrix dshape (Dof x Dim) (16 x 4)
so that each row contains the derivatives of one shape function */
virtual void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const;
virtual void CalcHessian (const IntegrationPoint &ip,
DenseMatrix &h) const;
virtual void ProjectDelta(int vertex, Vector &dofs) const
{ dofs = 0.0; dofs(vertex) = 1.0; }
};
/// Class for linear FE on a pentatope
class Linear4DFiniteElement : public NodalFiniteElement
{
public:
/// Construct a linear FE on tetrahedron
Linear4DFiniteElement();
/** virtual function which evaluates the values of all
shape functions at a given point ip and stores
them in the vector shape of dimension Dof (4) */
virtual void CalcShape(const IntegrationPoint &ip, Vector &shape) const;
/** virtual function which evaluates the values of all
partial derivatives of all shape functions at a given
point ip and stores them in the matrix dshape (Dof x Dim) (4 x 3)
so that each row contains the derivatives of one shape function */
virtual void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const;
virtual void ProjectDelta(int vertex, Vector &dofs) const
{ dofs = 0.0; dofs(vertex) = 1.0; }
virtual void GetFaceDofs(int face, int **dofs, int *ndofs) const;
virtual void CalcHessian(const IntegrationPoint &ip, DenseMatrix &h) const;
};
/// Class for quadratic FE on pentatope
class Quadratic4DFiniteElement : public NodalFiniteElement
{
public:
/// Construct a quadratic FE on pentatope
Quadratic4DFiniteElement();
virtual void CalcShape(const IntegrationPoint &ip, Vector &shape) const;
virtual void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const;
virtual void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const;
};
/// A 2D Crouzeix-Raviart element on triangle
class CrouzeixRaviartFiniteElement : public NodalFiniteElement
@@ -1189,7 +1257,126 @@ public:
DenseMatrix &dshape) const;
};
//lowest order first kind nedelec element for a pentatope
class Nedelec1PentFiniteElement : public VectorFiniteElement
{
private:
static const double tk[10][4];
public:
Nedelec1PentFiniteElement();
virtual void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const;
virtual void CalcVShape(ElementTransformation &Trans,
DenseMatrix &shape) const
{ CalcVShape_ND(Trans, shape); }
virtual void CalcCurlShape(const IntegrationPoint &ip,
DenseMatrix &curl_shape) const;
virtual void GetLocalInterpolation (ElementTransformation &Trans,
DenseMatrix &I) const;
using FiniteElement::Project;
virtual void Project (VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const;
virtual void Project(const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &I) const;
virtual void ProjectGrad(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &grad) const;
};
//lowest order second kind nedelec element for a pentatope
class Nedelec1FullPentFiniteElement : public VectorFiniteElement
{
private:
static const double tk[10][4];
public:
Nedelec1FullPentFiniteElement();
virtual void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const;
virtual void CalcVShape(ElementTransformation &Trans,
DenseMatrix &shape) const
{ CalcVShape_ND(Trans, shape); }
virtual void CalcCurlShape(const IntegrationPoint &ip,
DenseMatrix &curl_shape) const;
virtual void GetLocalInterpolation (ElementTransformation &Trans,
DenseMatrix &I) const {};
using FiniteElement::Project;
virtual void Project (VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const;
virtual void Project(const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &I) const;
virtual void ProjectGrad(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &grad) const;
};
class DivSkew1PentFiniteElement : public VectorFiniteElement
{
private:
static const double tk1[10][4];
static const double tk2[10][4];
public:
DivSkew1PentFiniteElement();
virtual void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const;
virtual void CalcVShape(ElementTransformation &Trans,
DenseMatrix &shape) const
{ CalcVShape_DivSkew(Trans, shape); }
virtual void CalcDivSkewShape(const IntegrationPoint &ip,
DenseMatrix &divSkew_shape) const;
virtual void GetLocalInterpolation (ElementTransformation &Trans,
DenseMatrix &I) const;
using FiniteElement::Project;
virtual void Project (VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const;
virtual void Project(const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &I) const;
virtual void ProjectCurl(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &curl) const;
};
class RT0PentFiniteElement : public VectorFiniteElement
{
private:
static const double nk[5][4];
public:
RT0PentFiniteElement();
virtual void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const;
virtual void CalcVShape(ElementTransformation &Trans,
DenseMatrix &shape) const
{ CalcVShape_RT(Trans, shape); };
virtual void CalcDivShape(const IntegrationPoint &ip,
Vector &divshape) const;
virtual void GetLocalInterpolation (ElementTransformation &Trans,
DenseMatrix &I) const;
using FiniteElement::Project;
virtual void Project (VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const;
virtual void Project(const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &I) const;
virtual void ProjectDivSkew(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &DivSkew) const;
};
} // namespace mfem
#endif
+341
View File
@@ -1040,4 +1040,345 @@ void H1_WedgeElement::CalcDShape(const IntegrationPoint &ip,
}
}
H1_PentatopeElement::H1_PentatopeElement(const int p, const int type)
: NodalFiniteElement(4, Geometry::PENTATOPE,
((p + 1)*(p + 2)*(p + 3)*(p + 4))/24,
p, FunctionSpace::Pk)
{
const double *cp = poly1d.ClosedPoints(p, VerifyClosed(type));
#ifndef MFEM_THREAD_SAFE
shape_x.SetSize(p + 1);
shape_y.SetSize(p + 1);
shape_z.SetSize(p + 1);
shape_t.SetSize(p + 1);
shape_l.SetSize(p + 1);
dshape_x.SetSize(p + 1);
dshape_y.SetSize(p + 1);
dshape_z.SetSize(p + 1);
dshape_t.SetSize(p + 1);
dshape_l.SetSize(p + 1);
ddshape_x.SetSize(p + 1);
ddshape_y.SetSize(p + 1);
ddshape_z.SetSize(p + 1);
ddshape_t.SetSize(p + 1);
ddshape_l.SetSize(p + 1);
u.SetSize(dof);
du.SetSize(dof, dim);
ddu.SetSize(dof,dim*(dim+1)/2 );
#else
Vector shape_x(p + 1), shape_y(p + 1), shape_z(p + 1), shape_t(p+1),
shape_l(p + 1);
#endif
// vertices
Nodes.IntPoint(0).Set4(cp[0], cp[0], cp[0], cp[0]);
Nodes.IntPoint(1).Set4(cp[p], cp[0], cp[0], cp[0]);
Nodes.IntPoint(2).Set4(cp[0], cp[p], cp[0], cp[0]);
Nodes.IntPoint(3).Set4(cp[0], cp[0], cp[p], cp[0]);
Nodes.IntPoint(4).Set4(cp[0], cp[0], cp[0], cp[p]);
// edges (see Tetrahedron::edges in mesh/tetrahedron.cpp)
int o = 5;
for (int i = 1; i < p; i++) // (0,1)
{
Nodes.IntPoint(o++).Set4(cp[i], cp[0], cp[0], cp[0]);
}
for (int i = 1; i < p; i++) // (0,2)
{
Nodes.IntPoint(o++).Set4(cp[0], cp[i], cp[0], cp[0]);
}
for (int i = 1; i < p; i++) // (0,3)
{
Nodes.IntPoint(o++).Set4(cp[0], cp[0], cp[i], cp[0]);
}
for (int i = 1; i < p; i++) // (0,4)
{
Nodes.IntPoint(o++).Set4(cp[0], cp[0], cp[0], cp[i]);
}
for (int i = 1; i < p; i++) // (1,2)
{
Nodes.IntPoint(o++).Set4(cp[p-i], cp[i], cp[0], cp[0]);
}
for (int i = 1; i < p; i++) // (1,3)
{
Nodes.IntPoint(o++).Set4(cp[p-i], cp[0], cp[i], cp[0]);
}
for (int i = 1; i < p; i++) // (1,4)
{
Nodes.IntPoint(o++).Set4(cp[p-i], cp[0], cp[0], cp[i]);
}
for (int i = 1; i < p; i++) // (2,3)
{
Nodes.IntPoint(o++).Set4(cp[0], cp[p-i], cp[i], cp[0]);
}
for (int i = 1; i < p; i++) // (2,4)
{
Nodes.IntPoint(o++).Set4(cp[0], cp[p-i], cp[0], cp[i]);
}
for (int i = 1; i < p; i++) // (3,4)
{
Nodes.IntPoint(o++).Set4(cp[0], cp[0], cp[p-i], cp[i]);
}
// planars (see Mesh::GeneratePlanars in mesh/mesh.cpp)
for (int j = 1; j < p; j++)
for (int i=1; i + j < p; i++) // (0,1,2)
{
double w = cp[i] + cp[j] + cp[p-i-j];
Nodes.IntPoint(o++).Set4(cp[i]/w, cp[j]/w, cp[0], cp[0]);
}
for (int j = 1; j < p; j++)
for (int i=1; i + j < p; i++) // (0,1,3)
{
double w = cp[i] + cp[j] + cp[p-i-j];
Nodes.IntPoint(o++).Set4(cp[i]/w, cp[0], cp[j]/w, cp[0]);
}
for (int j = 1; j < p; j++)
for (int i=1; i + j < p; i++) // (0,1,4)
{
double w = cp[i] + cp[j] + cp[p-i-j];
Nodes.IntPoint(o++).Set4(cp[i]/w, cp[0], cp[0], cp[j]/w);
}
for (int j = 1; j < p; j++)
for (int i=1; i + j < p; i++) // (0,2,3)
{
double w = cp[i] + cp[j] + cp[p-i-j];
Nodes.IntPoint(o++).Set4(cp[0], cp[i]/w, cp[j]/w, cp[0]);
}
for (int j = 1; j < p; j++)
for (int i=1; i + j < p; i++) // (0,2,4)
{
double w = cp[i] + cp[j] + cp[p-i-j];
Nodes.IntPoint(o++).Set4(cp[0], cp[i]/w, cp[0], cp[j]/w);
}
for (int j = 1; j < p; j++)
for (int i=1; i + j < p; i++) // (0,3,4)
{
double w = cp[i] + cp[j] + cp[p-i-j];
Nodes.IntPoint(o++).Set4(cp[0], cp[0], cp[i]/w, cp[j]/w);
}
for (int j = 1; j < p; j++)
for (int i=1; i + j < p; i++) // (1,2,3)
{
double w = cp[i] + cp[j] + cp[p-i-j];
Nodes.IntPoint(o++).Set4(cp[p-i-j]/w, cp[i]/w, cp[j]/w, cp[0]);
}
for (int j = 1; j < p; j++)
for (int i=1; i + j < p; i++) // (1,2,4)
{
double w = cp[i] + cp[j] + cp[p-i-j];
Nodes.IntPoint(o++).Set4(cp[p-i-j]/w, cp[i]/w, cp[0], cp[j]/w);
}
for (int j = 1; j < p; j++)
for (int i=1; i + j < p; i++) // (1,3,4)
{
double w = cp[i] + cp[j] + cp[p-i-j];
Nodes.IntPoint(o++).Set4(cp[p-i-j]/w, cp[0], cp[i]/w, cp[j]/w);
}
for (int j = 1; j < p; j++)
for (int i=1; i + j < p; i++) // (2,3,4)
{
double w = cp[i] + cp[j] + cp[p-i-j];
Nodes.IntPoint(o++).Set4(cp[0], cp[p-i-j]/w, cp[i]/w, cp[j]/w);
}
// face(volumes)s (see Mesh::GenerateFaces in mesh/mesh.cpp)
for (int k = 1; k < p; k++)
for (int j = 1; j + k < p; j++)
for (int i = 1; i + j + k < p; i++) // (0,1,2,3)
{
double w = cp[i] + cp[j] + cp[k] + cp[p-i-j-k];
Nodes.IntPoint(o++).Set4(cp[i]/w, cp[j]/w, cp[k]/w, cp[0]);
}
for (int k = 1; k < p; k++)
for (int j = 1; j + k < p; j++)
for (int i = 1; i + j + k < p; i++) // (0,2,1,4)
{
double w = cp[i] + cp[j] + cp[k] + cp[p-i-j-k];
Nodes.IntPoint(o++).Set4(cp[j]/w, cp[i]/w, cp[0], cp[k]/w);
}
for (int k = 1; k < p; k++)
for (int j = 1; j + k < p; j++)
for (int i = 1; i + j + k < p; i++) // (0,1,3,4)
{
double w = cp[i] + cp[j] + cp[k] + cp[p-i-j-k];
Nodes.IntPoint(o++).Set4(cp[i]/w, cp[0], cp[j]/w, cp[k]/w);
}
for (int k = 1; k < p; k++)
for (int j = 1; j + k < p; j++)
for (int i = 1; i + j + k < p; i++) // (0,3,2,4)
{
double w = cp[i] + cp[j] + cp[k] + cp[p-i-j-k];
Nodes.IntPoint(o++).Set4(cp[0], cp[j]/w, cp[i]/w, cp[k]/w);
}
for (int k = 1; k < p; k++)
for (int j = 1; j + k < p; j++)
for (int i = 1; i + j + k < p; i++) // (1,2,3,4)
{
double w = cp[i] + cp[j] + cp[k] + cp[p-i-j-k];
Nodes.IntPoint(o++).Set4(cp[p-i-j-k]/w, cp[i]/w, cp[j]/w, cp[k]/w);
}
// interior
for (int l = 1; l < p; l++)
for (int k = 1; k + l < p; k++)
for (int j = 1; j + k + l < p; j++)
for (int i = 1; i + j + k + l < p; i++)
{
double w = cp[i] + cp[j] + cp[k] + cp[l] + cp[p-i-j-k-l];
Nodes.IntPoint(o++).Set4(cp[i]/w, cp[j]/w, cp[k]/w, cp[l]/w);
}
DenseMatrix T(dof);
for (int m = 0; m < dof; m++)
{
IntegrationPoint &ip = Nodes.IntPoint(m);
poly1d.CalcBasis(p, ip.x, shape_x);
poly1d.CalcBasis(p, ip.y, shape_y);
poly1d.CalcBasis(p, ip.z, shape_z);
poly1d.CalcBasis(p, ip.t, shape_t);
poly1d.CalcBasis(p, 1. - ip.x - ip.y - ip.z - ip.t, shape_l);
o = 0;
for (int l = 0; l <= p; l++)
for (int k = 0; k + l <= p; k++)
for (int j = 0; j + k +l <= p; j++)
for (int i = 0; i + j + k + l <= p; i++)
{
T(o++, m) = shape_x(i)*shape_y(j)*shape_z(k)*shape_t(l)*shape_l(p-i-j-k-l);
}
}
Ti.Factor(T);
// cout << "H1_PentatopeElement(" << p << ") : "; Ti.TestInversion();
}
void H1_PentatopeElement::CalcShape(const IntegrationPoint &ip,
Vector &shape) const
{
const int p = order;
#ifdef MFEM_THREAD_SAFE
Vector shape_x(p + 1), shape_y(p + 1), shape_z(p + 1), shape_t(p+1),
shape_l(p + 1);
Vector u(Dof);
#endif
poly1d.CalcBasis(p, ip.x, shape_x);
poly1d.CalcBasis(p, ip.y, shape_y);
poly1d.CalcBasis(p, ip.z, shape_z);
poly1d.CalcBasis(p, ip.t, shape_t);
poly1d.CalcBasis(p, 1. - ip.x - ip.y - ip.z - ip.t, shape_l);
for (int o = 0, l = 0; l <= p; l++)
for (int k = 0; k + l <= p; k++)
for (int j = 0; j + k + l <= p; j++)
for (int i = 0; i + j + k + l <= p; i++)
{
u(o++) = shape_x(i)*shape_y(j)*shape_z(k)*shape_t(l)*shape_l(p-i-j-k-l);
}
Ti.Mult(u, shape);
}
void H1_PentatopeElement::CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const
{
const int p = order;
#ifdef MFEM_THREAD_SAFE
Vector shape_x(p + 1), shape_y(p + 1), shape_z(p + 1), shape_t(p+1),
shape_l(p + 1);
Vector dshape_x(p + 1), dshape_y(p + 1), dshape_z(p + 1), dshape_t(p+1),
dshape_l(p + 1);
DenseMatrix du(Dof, Dim);
#endif
poly1d.CalcBasis(p, ip.x, shape_x, dshape_x);
poly1d.CalcBasis(p, ip.y, shape_y, dshape_y);
poly1d.CalcBasis(p, ip.z, shape_z, dshape_z);
poly1d.CalcBasis(p, ip.t, shape_t, dshape_t);
poly1d.CalcBasis(p, 1. - ip.x - ip.y - ip.z - ip.t, shape_l, dshape_l);
for (int o = 0, l = 0; l <= p; l++)
for (int k = 0; k + l <= p; k++)
for (int j = 0; j + k + l <= p; j++)
for (int i = 0; i + j + k + l <= p; i++)
{
int m = p - i - j - k - l;
du(o,0) = ((dshape_x(i)* shape_l(m)) -
( shape_x(i)*dshape_l(m)))*shape_y(j)*shape_z(k)*shape_t(l);
du(o,1) = ((dshape_y(j)* shape_l(m)) -
( shape_y(j)*dshape_l(m)))*shape_x(i)*shape_z(k)*shape_t(l);
du(o,2) = ((dshape_z(k)* shape_l(m)) -
( shape_z(k)*dshape_l(m)))*shape_x(i)*shape_y(j)*shape_t(l);
du(o,3) = ((dshape_t(l)* shape_l(m)) -
( shape_t(l)*dshape_l(m)))*shape_x(i)*shape_y(j)*shape_z(k);
o++;
}
Ti.Mult(du, dshape);
}
void H1_PentatopeElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &ddshape) const
{
const int p = order;
#ifdef MFEM_THREAD_SAFE
Vector shape_x(p + 1), shape_y(p + 1), shape_z(p + 1), shape_t(p+1),
shape_l(p + 1);
Vector dshape_x(p + 1), dshape_y(p + 1), dshape_z(p + 1), dshape_t(p+1),
dshape_l(p + 1);
Vector ddshape_x(p + 1), ddshape_y(p + 1), ddshape_z(p + 1), ddshape_t(p+1),
ddshape_l(p + 1);
DenseMatrix ddu(Dof, ((Dim+1)*Dim)/2);
#endif
poly1d.CalcBasis(p, ip.x, shape_x, dshape_x, ddshape_x);
poly1d.CalcBasis(p, ip.y, shape_y, dshape_y, ddshape_y);
poly1d.CalcBasis(p, ip.z, shape_z, dshape_z, ddshape_z);
poly1d.CalcBasis(p, ip.t, shape_t, dshape_t, ddshape_t);
poly1d.CalcBasis(p, 1. - ip.x - ip.y - ip.z - ip.t, shape_l, dshape_l,
ddshape_l);
for (int o = 0, l = 0; l <= p; l++)
for (int k = 0; k + l <= p; k++)
for (int j = 0; j + k + l <= p; j++)
for (int i = 0; i + j + k + l <= p; i++)
{
// u_xx, u_xy, u_xz, u_xt, u_yy, u_yz, u_yt, u_zz, u_zt, u_tt
int m = p - i - j - k - l;
ddu(o,0) = ((ddshape_x(i)*shape_l(m)) - 2.* (dshape_x(i)*dshape_l(m)) +
(shape_x(i)*ddshape_l(m))) * shape_y(j) * shape_z(k) * shape_t(l);
ddu(o,1) = ((dshape_y(j)* ( (dshape_x(i)*shape_l(m)) - (shape_x(i)*dshape_l(
m))) ) + (shape_y(j)* ((ddshape_l(m)*shape_x(i)) - (dshape_x(i) * dshape_l(
m)) ) ) )* shape_z(k) * shape_t(l);
ddu(o,2) = ((dshape_z(k)* ( (dshape_x(i)*shape_l(m)) - (shape_x(i)*dshape_l(
m))) ) + (shape_z(k)* ((ddshape_l(m)*shape_x(i)) - (dshape_x(i) * dshape_l(
m)) ) ) )* shape_y(j) * shape_t(l);
ddu(o,3) = ((dshape_t(l)* ( (dshape_x(i)*shape_l(m)) - (shape_x(i)*dshape_l(
m))) ) + (shape_t(l)* ((ddshape_l(m)*shape_x(i)) - (dshape_x(i) * dshape_l(
m)) ) ) )* shape_y(j) * shape_z(k);
ddu(o,4) = ((ddshape_y(j)*shape_l(m)) - 2.* (dshape_y(j)*dshape_l(m)) +
(shape_y(j)*ddshape_l(m))) * shape_x(i) * shape_z(k) * shape_t(l);
ddu(o,5) = ((dshape_z(k)* ( (dshape_y(j)*shape_l(m)) - (shape_y(j)*dshape_l(
m))) ) + (shape_z(k)* ((ddshape_l(m)*shape_y(j)) - (dshape_y(j) * dshape_l(
m)) ) ) )* shape_x(i) * shape_t(l);
ddu(o,6) = ((dshape_t(l)* ( (dshape_y(j)*shape_l(m)) - (shape_y(j)*dshape_l(
m))) ) + (shape_t(l)* ((ddshape_l(m)*shape_y(j)) - (dshape_y(j) * dshape_l(
m)) ) ) )* shape_x(i) * shape_z(k);
ddu(o,7) = ((ddshape_z(k)*shape_l(m)) - 2.* (dshape_z(k)*dshape_l(m)) +
(shape_z(k)*ddshape_l(m))) * shape_y(j) * shape_x(i) * shape_t(l);
ddu(o,8) = ((dshape_t(l)* ( (dshape_z(k)*shape_l(m)) - (shape_z(k)*dshape_l(
m))) ) + (shape_t(l)* ((ddshape_l(m)*shape_z(k)) - (dshape_z(k) * dshape_l(
m)) ) ) )* shape_x(i) * shape_y(j);
ddu(o,9) = ((ddshape_t(l)*shape_l(m)) - 2.* (dshape_t(l)*dshape_l(m)) +
(shape_t(l)*ddshape_l(m))) * shape_y(j) * shape_x(i) * shape_z(k);
o++;
}
Ti.Mult(ddu, ddshape);
}
}
+22
View File
@@ -148,6 +148,28 @@ public:
DenseMatrix &dshape) const;
};
class H1_PentatopeElement : public NodalFiniteElement
{
private:
#ifndef MFEM_THREAD_SAFE
mutable Vector shape_x, shape_y, shape_z, shape_t, shape_l;
mutable Vector dshape_x, dshape_y, dshape_z, dshape_t, dshape_l, u;
mutable Vector ddshape_x, ddshape_y, ddshape_z, ddshape_t, ddshape_l;
mutable DenseMatrix du, ddu;
#endif
DenseMatrixInverse Ti;
public:
H1_PentatopeElement(const int p,
const int btype = BasisType::GaussLobatto);
virtual void CalcShape(const IntegrationPoint &ip, Vector &shape) const;
virtual void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const;
virtual void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &ddshape) const;
};
} // namespace mfem
#endif
+171
View File
@@ -923,4 +923,175 @@ void L2_WedgeElement::CalcDShape(const IntegrationPoint &ip,
}
}
L2_PentatopeElement::L2_PentatopeElement(const int p, const int _type)
: NodalFiniteElement(4, Geometry::PENTATOPE,
((p + 1)*(p + 2)*(p + 3)*(p + 4))/24,
p, FunctionSpace::Pk), T(dof)
{
const double *op;
type = _type;
switch (type)
{
case 0: op = poly1d.OpenPoints(p); break;
case 1:
default: op = poly1d.ClosedPoints(p);
}
#ifndef MFEM_THREAD_SAFE
shape_x.SetSize(p + 1);
shape_y.SetSize(p + 1);
shape_z.SetSize(p + 1);
shape_t.SetSize(p + 1);
shape_l.SetSize(p + 1);
dshape_x.SetSize(p + 1);
dshape_y.SetSize(p + 1);
dshape_z.SetSize(p + 1);
dshape_t.SetSize(p + 1);
dshape_l.SetSize(p + 1);
u.SetSize(dof);
du.SetSize(dof, dim);
#else
Vector shape_x(p + 1), shape_y(p + 1), shape_z(p + 1), shape_t(p + 1),
shape_l(p + 1);
#endif
for (int o = 0, l = 0; l <= p; l++)
for (int k = 0; l + k <= p; k++)
for (int j = 0; j + l + k <= p; j++)
for (int i = 0; i + j + l + k <= p; i++)
{
double w = op[i] + op[j] + op[k] + op[l] + op[p-i-j-k-l];
Nodes.IntPoint(o++).Set4(op[i]/w, op[j]/w, op[k]/w, op[l]/w);
}
for (int m = 0; m < dof; m++)
{
IntegrationPoint &ip = Nodes.IntPoint(m);
poly1d.CalcBasis(p, ip.x, shape_x);
poly1d.CalcBasis(p, ip.y, shape_y);
poly1d.CalcBasis(p, ip.z, shape_z);
poly1d.CalcBasis(p, ip.t, shape_t);
poly1d.CalcBasis(p, 1. - ip.x - ip.y - ip.z - ip.t, shape_l);
for (int o = 0, l = 0; l <= p; l++)
for (int k = 0; l + k <= p; k++)
for (int j = 0; j + l + k <= p; j++)
for (int i = 0; i + j + l + k <= p; i++)
{
T(o++, m) = shape_x(i)*shape_y(j)*shape_z(k)*shape_t(l)*shape_l(p-i-j-k-l);
}
}
T.Invert();
}
void L2_PentatopeElement::CalcShape(const IntegrationPoint &ip,
Vector &shape) const
{
const int p = order;
#ifdef MFEM_THREAD_SAFE
Vector shape_x(p + 1), shape_y(p + 1), shape_z(p + 1), shape_l(p + 1);
Vector u(Dof);
#endif
poly1d.CalcBasis(p, ip.x, shape_x);
poly1d.CalcBasis(p, ip.y, shape_y);
poly1d.CalcBasis(p, ip.z, shape_z);
poly1d.CalcBasis(p, ip.t, shape_t);
poly1d.CalcBasis(p, 1. - ip.x - ip.y - ip.z - ip.t, shape_l);
for (int o = 0, l = 0; l <= p; l++)
for (int k = 0; l + k <= p; k++)
for (int j = 0; j + l + k <= p; j++)
for (int i = 0; i + j + l + k <= p; i++)
{
u(o++) = shape_x(i)*shape_y(j)*shape_z(k)*shape_t(l)*shape_l(p-i-j-k-l);
}
T.Mult(u, shape);
}
void L2_PentatopeElement::CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const
{
const int p = order;
#ifdef MFEM_THREAD_SAFE
Vector shape_x(p + 1), shape_y(p + 1), shape_z(p + 1), shape_t(p + 1),
shape_l(p + 1);
Vector dshape_x(p + 1), dshape_y(p + 1), dshape_z(p + 1), dshape_t(p + 1),
dshape_l(p + 1);
DenseMatrix du(Dof, Dim);
#endif
poly1d.CalcBasis(p, ip.x, shape_x, dshape_x);
poly1d.CalcBasis(p, ip.y, shape_y, dshape_y);
poly1d.CalcBasis(p, ip.z, shape_z, dshape_z);
poly1d.CalcBasis(p, ip.t, shape_t, dshape_t);
poly1d.CalcBasis(p, 1. - ip.x - ip.y - ip.z - ip.t, shape_l, dshape_l);
for (int o = 0, m = 0; m <= p; m++)
for (int k = 0; k + m <= p; k++)
for (int j = 0; j + k + m <= p; j++)
for (int i = 0; i + j + k + m <= p; i++)
{
int l = p - i - j - k - m;
du(o,0) = ((dshape_x(i)* shape_l(l)) -
( shape_x(i)*dshape_l(l)))*shape_y(j)*shape_z(k)*shape_t(m);
du(o,1) = ((dshape_y(j)* shape_l(l)) -
( shape_y(j)*dshape_l(l)))*shape_x(i)*shape_z(k)*shape_t(m);
du(o,2) = ((dshape_z(k)* shape_l(l)) -
( shape_z(k)*dshape_l(l)))*shape_x(i)*shape_y(j)*shape_t(m);
du(o,3) = ((dshape_t(m)* shape_l(l)) -
( shape_t(m)*dshape_l(l)))*shape_x(i)*shape_y(j)*shape_z(k);
o++;
}
Mult(T, du, dshape);
}
void L2_PentatopeElement::ProjectDelta(int vertex, Vector &dofs) const
{
switch (vertex)
{
case 0:
for (int i = 0; i < dof; i++)
{
const IntegrationPoint &ip = Nodes.IntPoint(i);
dofs[i] = pow(1.0 - ip.x - ip.y - ip.z - ip.t, order);
}
break;
case 1:
for (int i = 0; i < dof; i++)
{
const IntegrationPoint &ip = Nodes.IntPoint(i);
dofs[i] = pow(ip.x, order);
}
break;
case 2:
for (int i = 0; i < dof; i++)
{
const IntegrationPoint &ip = Nodes.IntPoint(i);
dofs[i] = pow(ip.y, order);
}
break;
case 3:
for (int i = 0; i < dof; i++)
{
const IntegrationPoint &ip = Nodes.IntPoint(i);
dofs[i] = pow(ip.z, order);
}
break;
case 4:
for (int i = 0; i < dof; i++)
{
const IntegrationPoint &ip = Nodes.IntPoint(i);
dofs[i] = pow(ip.t, order);
}
break;
}
}
}
+19
View File
@@ -183,6 +183,25 @@ public:
DenseMatrix &dshape) const;
};
class L2_PentatopeElement : public NodalFiniteElement
{
private:
int type;
#ifndef MFEM_THREAD_SAFE
mutable Vector shape_x, shape_y, shape_z, shape_t, shape_l;
mutable Vector dshape_x, dshape_y, dshape_z, dshape_t, dshape_l, u;
mutable DenseMatrix du;
#endif
DenseMatrix T;
public:
L2_PentatopeElement(const int p, const int _type = 0);
virtual void CalcShape(const IntegrationPoint &ip, Vector &shape) const;
virtual void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const;
virtual void ProjectDelta(int vertex, Vector &dofs) const;
};
} // namespace mfem
#endif
+264
View File
@@ -2266,4 +2266,268 @@ void RT_R2D_QuadrilateralElement::CalcDivShape(const IntegrationPoint &ip,
}
}
const double RT_PentatopeElement::nk[20] =
{ 0,0,0,-1, 0,0,-1,0, 0,-1,0,0, -1,0,0,0, 1,1,1,1};
// { .5,.5,.5, -.5,0,0, 0,-.5,0, 0,0,-.5}; // n_F |F|
const double RT_PentatopeElement::c = 1./5.;
RT_PentatopeElement::RT_PentatopeElement(const int p)
: VectorFiniteElement(4, Geometry::PENTATOPE, (p + 1)*(p + 2)*(p + 3)*(p + 5)/6,
p + 1, H_DIV, FunctionSpace::Pk),
dof2nk(dof)
{
const double *iop = (p > 0) ? poly1d.OpenPoints(p - 1) : NULL;
const double *bop = poly1d.OpenPoints(p);
#ifndef MFEM_THREAD_SAFE
shape_x.SetSize(p + 1);
shape_y.SetSize(p + 1);
shape_z.SetSize(p + 1);
shape_t.SetSize(p + 1);
shape_l.SetSize(p + 1);
dshape_x.SetSize(p + 1);
dshape_y.SetSize(p + 1);
dshape_z.SetSize(p + 1);
dshape_t.SetSize(p + 1);
dshape_l.SetSize(p + 1);
u.SetSize(dof, dim);
divu.SetSize(dof);
#else
Vector shape_x(p + 1), shape_y(p + 1), shape_z(p + 1), shape_t(p + 1),
shape_l(p + 1);
#endif
int o = 0;
// faces (see Mesh::GenerateFaces in mesh/mesh.cpp,
// the constructor of H1_PentatopeElement)
for (int k = 0; k <= p; k++)
for (int j = 0; j + k <= p; j++)
for (int i = 0; i + j + k <= p; i++) // (0,1,2,3)
{
double w = bop[i] + bop[j] + bop[k] + bop[p-i-j-k];
Nodes.IntPoint(o).Set4(bop[i]/w, bop[j]/w, bop[k]/w, 0.);
dof2nk[o++] = 0;
}
for (int k = 0; k <= p; k++)
for (int j = 0; j + k <= p; j++)
for (int i = 0; i + j + k <= p; i++) // (0,2,1,4)
{
double w = bop[i] + bop[j] + bop[k] + bop[p-i-j-k];
Nodes.IntPoint(o).Set4(bop[j]/w, bop[i]/w, 0., bop[k]/w);
dof2nk[o++] = 1;
}
for (int k = 0; k <= p; k++)
for (int j = 0; j + k <= p; j++)
for (int i = 0; i + j + k <= p; i++) // (0,1,3,4)
{
double w = bop[i] + bop[j] + bop[k] + bop[p-i-j-k];
Nodes.IntPoint(o).Set4(bop[i]/w, 0., bop[j]/w, bop[k]/w);
dof2nk[o++] = 2;
}
for (int k = 0; k <= p; k++)
for (int j = 0; j + k <= p; j++)
for (int i = 0; i + j + k <= p; i++) // (0,3,2,4)
{
double w = bop[i] + bop[j] + bop[k] + bop[p-i-j-k];
Nodes.IntPoint(o).Set4(0., bop[j]/w, bop[i]/w, bop[k]/w);
dof2nk[o++] = 3;
}
for (int k = 0; k <= p; k++)
for (int j = 0; j + k <= p; j++)
for (int i = 0; i + j + k <= p; i++) // (1,2,3,4)
{
double w = bop[i] + bop[j] + bop[k] + bop[p-i-j-k];
Nodes.IntPoint(o).Set4(bop[p-i-j-k]/w, bop[i]/w, bop[j]/w, bop[k]/w);
dof2nk[o++] = 4;
}
// interior
for (int l = 0; l < p; l++)
for (int k = 0; k + l < p; k++)
for (int j = 0; j + k + l < p; j++)
for (int i = 0; i + j + k + l < p; i++)
{
double w = iop[i] + iop[j] + iop[k] + iop[l] + iop[p-1-i-j-k-l];
Nodes.IntPoint(o).Set4(iop[i]/w, iop[j]/w, iop[k]/w, iop[l]/w);
dof2nk[o++] = 1;
Nodes.IntPoint(o).Set4(iop[i]/w, iop[j]/w, iop[k]/w, iop[l]/w);
dof2nk[o++] = 2;
Nodes.IntPoint(o).Set4(iop[i]/w, iop[j]/w, iop[k]/w, iop[l]/w);
dof2nk[o++] = 3;
Nodes.IntPoint(o).Set4(iop[i]/w, iop[j]/w, iop[k]/w, iop[l]/w);
dof2nk[o++] = 4;
}
DenseMatrix T(dof);
for (int m = 0; m < dof; m++)
{
const IntegrationPoint &ip = Nodes.IntPoint(m);
poly1d.CalcBasis(p, ip.x, shape_x);
poly1d.CalcBasis(p, ip.y, shape_y);
poly1d.CalcBasis(p, ip.z, shape_z);
poly1d.CalcBasis(p, ip.t, shape_t);
poly1d.CalcBasis(p, 1. - ip.x - ip.y - ip.z - ip.t, shape_l);
const double *nm = nk + 4*dof2nk[m];
o = 0;
for (int l = 0; l<= p; l++)
for (int k = 0; k + l <= p; k++)
for (int j = 0; j + k + l <= p; j++)
for (int i = 0; i + j + k + l <= p; i++)
{
double s = shape_x(i)*shape_y(j)*shape_z(k)*shape_t(l)*shape_l(p-i-j-k-l);
T(o++, m) = s * nm[0];
T(o++, m) = s * nm[1];
T(o++, m) = s * nm[2];
T(o++, m) = s * nm[3];
}
for (int k = 0; k <= p; k++)
for (int j = 0; j + k <= p; j++)
for (int i = 0; i + j + k <= p; i++)
{
double s = shape_x(i)*shape_y(j)*shape_z(k)*shape_t(p-i-j-k);
T(o++, m) = s*((ip.x - c)*nm[0] + (ip.y - c)*nm[1] +
(ip.z - c)*nm[2] + (ip.t - c)*nm[3]);
}
}
Ti.Factor(T);
// mfem::out << "RT_TetrahedronElement(" << p << ") : "; Ti.TestInversion();
}
void RT_PentatopeElement::CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const
{
const int p = order - 1;
#ifdef MFEM_THREAD_SAFE
Vector shape_x(p + 1), shape_y(p + 1), shape_z(p + 1), shape_t(p + 1),
shape_l(p + 1);
DenseMatrix u(Dof, Dim);
#endif
poly1d.CalcBasis(p, ip.x, shape_x);
poly1d.CalcBasis(p, ip.y, shape_y);
poly1d.CalcBasis(p, ip.z, shape_z);
poly1d.CalcBasis(p, ip.t, shape_t);
poly1d.CalcBasis(p, 1. - ip.x - ip.y - ip.z - ip.t, shape_l);
int o = 0;
for (int l = 0; l <= p; l++)
for (int k = 0; k + l <= p; k++)
for (int j = 0; j + k + l <= p; j++)
for (int i = 0; i + j + k + l <= p; i++)
{
double s = shape_x(i)*shape_y(j)*shape_z(k)*shape_t(l)*shape_l(p-i-j-k-l);
u(o,0) = s; u(o,1) = 0; u(o,2) = 0; u(o,3) = 0; o++;
u(o,0) = 0; u(o,1) = s; u(o,2) = 0; u(o,3) = 0; o++;
u(o,0) = 0; u(o,1) = 0; u(o,2) = s; u(o,3) = 0; o++;
u(o,0) = 0; u(o,1) = 0; u(o,2) = 0; u(o,3) = s; o++;
}
for (int k = 0; k <= p; k++)
for (int j = 0; j + k <= p; j++)
for (int i = 0; i + j + k <= p; i++)
{
double s = shape_x(i)*shape_y(j)*shape_z(k)*shape_t(p-i-j-k);
u(o,0) = (ip.x - c)*s; u(o,1) = (ip.y - c)*s; u(o,2) = (ip.z - c)*s;
u(o,3) = (ip.t - c)*s;
o++;
}
Ti.Mult(u, shape);
}
void RT_PentatopeElement::CalcDivShape(const IntegrationPoint &ip,
Vector &divshape) const
{
const int p = order - 1;
#ifdef MFEM_THREAD_SAFE
Vector shape_x(p + 1), shape_y(p + 1), shape_z(p + 1), shape_l(p + 1);
Vector dshape_x(p + 1), dshape_y(p + 1), dshape_z(p + 1), dshape_l(p + 1);
Vector divu(Dof);
#endif
poly1d.CalcBasis(p, ip.x, shape_x, dshape_x);
poly1d.CalcBasis(p, ip.y, shape_y, dshape_y);
poly1d.CalcBasis(p, ip.z, shape_z, dshape_z);
poly1d.CalcBasis(p, ip.t, shape_t, dshape_t);
poly1d.CalcBasis(p, 1. - ip.x - ip.y - ip.z - ip.t, shape_l, dshape_l);
int o = 0;
for (int m = 0; m <= p; m++)
for (int k = 0; k + m <= p; k++)
for (int j = 0; j + k + m <= p; j++)
for (int i = 0; i + j + k + m <= p; i++)
{
int l = p - i - j - k - m;
divu(o++) = (dshape_x(i)*shape_l(l) -
shape_x(i)*dshape_l(l))*shape_y(j)*shape_z(k)*shape_t(m);
divu(o++) = (dshape_y(j)*shape_l(l) -
shape_y(j)*dshape_l(l))*shape_x(i)*shape_z(k)*shape_t(m);
divu(o++) = (dshape_z(k)*shape_l(l) -
shape_z(k)*dshape_l(l))*shape_x(i)*shape_y(j)*shape_t(m);
divu(o++) = (dshape_t(m)*shape_l(l) -
shape_t(m)*dshape_l(l))*shape_x(i)*shape_y(j)*shape_z(k);
}
for (int l = 0; l <= p; l++)
for (int j = 0; j + l<= p; j++)
for (int i = 0; i + j + l <= p; i++)
{
int k = p - i - j - l;
divu(o++) =
(shape_x(i) + (ip.x - c)*dshape_x(i))*shape_y(j)*shape_z(l)*shape_t(k) +
(shape_y(j) + (ip.y - c)*dshape_y(j))*shape_x(i)*shape_z(l)*shape_t(k) +
(shape_z(l) + (ip.z - c)*dshape_z(l))*shape_x(i)*shape_y(j)*shape_t(k) +
(shape_t(k) + (ip.t - c)*dshape_t(k))*shape_x(i)*shape_y(j)*shape_z(l);
}
Ti.Mult(divu, divshape);
}
void RT_PentatopeElement::ProjectDivSkew(const FiniteElement& fe,
ElementTransformation& Trans, DenseMatrix& DivSkew) const
{
int dof = fe.GetDof();
mfem_warning("RT_PentatopeElement::ProjectDivSkew(...) Implementation not tested!"); // TODO
#ifdef MFEM_THREAD_SAFE
DenseMatrix Jinv(dim, dim);
#endif
DivSkew.SetSize(dof,dof);
DivSkew = 0.0;
double n[4];
Vector ni(n, 4);
Vector vecF(4);
DenseMatrix DivSkewshape(dof,4);
DenseMatrix DivSkew_dFt(dof,4);
for (int k = 0; k < dof; k++)
{
Trans.SetIntPoint(&Nodes.IntPoint(k));
const DenseMatrix &J = Trans.Jacobian();
CalcAdjugateTranspose(J, Jinv);
fe.CalcDivSkewShape(Nodes.IntPoint(k), DivSkewshape);
MultABt(DivSkewshape, J, DivSkew_dFt);
DivSkew_dFt *= (1.0 / Trans.Weight());
Jinv.Mult(nk + dof2nk[k] * dim,n);
for (int j=0; j<dof; j++)
{
vecF(0) = DivSkew_dFt(j,0);
vecF(1) = DivSkew_dFt(j,1);
vecF(2) = DivSkew_dFt(j,2);
vecF(3) = DivSkew_dFt(j,3);
DivSkew(k, j) = vecF * ni;
}
}
}
}
+47
View File
@@ -524,6 +524,53 @@ public:
Vector &divshape) const;
};
class RT_PentatopeElement : public VectorFiniteElement
{
static const double nk[20], c;
#ifndef MFEM_THREAD_SAFE
mutable Vector shape_x, shape_y, shape_z, shape_t, shape_l;
mutable Vector dshape_x, dshape_y, dshape_z, dshape_t, dshape_l;
mutable DenseMatrix u;
mutable Vector divu;
#endif
Array<int> dof2nk;
DenseMatrixInverse Ti;
public:
RT_PentatopeElement(const int p);
virtual void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const;
virtual void CalcVShape(ElementTransformation &Trans,
DenseMatrix &shape) const
{ CalcVShape_RT(Trans, shape); }
virtual void CalcDivShape(const IntegrationPoint &ip,
Vector &divshape) const;
virtual void GetLocalInterpolation(ElementTransformation &Trans,
DenseMatrix &I) const
{ LocalInterpolation_RT(*this, nk, dof2nk, Trans, I); }
virtual void GetLocalRestriction(ElementTransformation &Trans,
DenseMatrix &R) const
{ LocalRestriction_RT(nk, dof2nk, Trans, R); }
virtual void GetTransferMatrix(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &I) const
{ LocalInterpolation_RT(CheckVectorFE(fe), nk, dof2nk, Trans, I); }
using FiniteElement::Project;
virtual void Project(VectorCoefficient &vc,
ElementTransformation &Trans, Vector &dofs) const
{ Project_RT(nk, dof2nk, vc, Trans, dofs); }
virtual void ProjectMatrixCoefficient(
MatrixCoefficient &mc, ElementTransformation &T, Vector &dofs) const
{ ProjectMatrixCoefficient_RT(nk, dof2nk, mc, T, dofs); }
virtual void Project(const FiniteElement &fe, ElementTransformation &Trans,
DenseMatrix &I) const
{ Project_RT(nk, dof2nk, fe, Trans, I); }
virtual void ProjectDivSkew(const FiniteElement &fe,
ElementTransformation &Trans,
DenseMatrix &DivSkew) const;
};
} // namespace mfem
+345 -2
View File
@@ -111,12 +111,29 @@ int FiniteElementCollection::HasFaceDofs(Geometry::Type geom, int p) const
case Geometry::PYRAMID:
return max(GetNumDof(Geometry::TRIANGLE, p),
GetNumDof(Geometry::SQUARE, p));
case Geometry::PENTATOPE:
return GetNumDof(Geometry::TETRAHEDRON, p);
case Geometry::TESSERACT:
return GetNumDof(Geometry::CUBE, p);
default:
MFEM_ABORT("unknown geometry type");
}
return 0;
}
int FiniteElementCollection::HasPlanarDofs(Geometry::Type GeomType, int p) const
{
switch (GeomType)
{
case Geometry::PENTATOPE: return GetNumDof(Geometry::TRIANGLE, p);
case Geometry::TESSERACT: return GetNumDof(Geometry::SQUARE, p);
default:
mfem_error ("FiniteElementCollection::HasPlanarDofs:"
" unknown geometry type.");
}
return 0;
}
FiniteElementCollection *FiniteElementCollection::GetTraceCollection() const
{
MFEM_ABORT("this method is not implemented in this derived class!");
@@ -653,6 +670,8 @@ LinearFECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
case Geometry::CUBE: return &ParallelepipedFE;
case Geometry::PRISM: return &WedgeFE;
case Geometry::PYRAMID: return &PyramidFE;
case Geometry::PENTATOPE: return &PentatopeFE;
case Geometry::TESSERACT: return &TesseractFE;
default:
if (error_mode == RETURN_NULL) { return nullptr; }
mfem_error ("LinearFECollection: unknown geometry type.");
@@ -672,6 +691,8 @@ int LinearFECollection::DofForGeometry(Geometry::Type GeomType) const
case Geometry::CUBE: return 0;
case Geometry::PRISM: return 0;
case Geometry::PYRAMID: return 0;
case Geometry::PENTATOPE: return 0;
case Geometry::TESSERACT: return 0;
default:
mfem_error ("LinearFECollection: unknown geometry type.");
}
@@ -697,6 +718,7 @@ QuadraticFECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
case Geometry::TETRAHEDRON: return &TetrahedronFE;
case Geometry::CUBE: return &ParallelepipedFE;
case Geometry::PRISM: return &WedgeFE;
case Geometry::PENTATOPE: return &PentatopeFE;
default:
if (error_mode == RETURN_NULL) { return nullptr; }
mfem_error ("QuadraticFECollection: unknown geometry type.");
@@ -715,6 +737,7 @@ int QuadraticFECollection::DofForGeometry(Geometry::Type GeomType) const
case Geometry::TETRAHEDRON: return 0;
case Geometry::CUBE: return 1;
case Geometry::PRISM: return 0;
case Geometry::PENTATOPE: return 0;
default:
mfem_error ("QuadraticFECollection: unknown geometry type.");
}
@@ -1541,6 +1564,135 @@ const int *ND1_3DFECollection::DofOrderForOrientation(Geometry::Type GeomType,
return ind_neg;
}
const FiniteElement *
ND1_4DFECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
{
switch (GeomType)
{
case Geometry::PENTATOPE: return &NedPentatopFE;
default:
mfem_error ("ND1_4DFECollection: unknown geometry type.");
}
return &NedPentatopFE; // Make some compilers happy
}
int ND1_4DFECollection::DofForGeometry(Geometry::Type GeomType) const
{
switch (GeomType)
{
case Geometry::POINT: return 0;
case Geometry::SEGMENT: return 1;
case Geometry::TRIANGLE: return 0;
case Geometry::SQUARE: return 0;
case Geometry::TETRAHEDRON: return 0;
case Geometry::CUBE: return 0;
case Geometry::PENTATOPE: return 0;
default:
mfem_error ("ND1_4DFECollection: unknown geometry type.");
}
return 0; // Make some compilers happy
}
const int * ND1_4DFECollection::DofOrderForOrientation(Geometry::Type GeomType,
int Or)
const
{
static int ind_pos[] = { 0 };
static int ind_neg[] = { -1 };
if (Or > 0)
{
return ind_pos;
}
return ind_neg;
}
const FiniteElement *
ND2_4DFECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
{
switch (GeomType)
{
case Geometry::PENTATOPE: return &NedPentatopFE;
default:
mfem_error ("ND2_4DFECollection: unknown geometry type.");
}
return &NedPentatopFE; // Make some compilers happy
}
int ND2_4DFECollection::DofForGeometry(Geometry::Type GeomType) const
{
switch (GeomType)
{
case Geometry::POINT: return 0;
case Geometry::SEGMENT: return 2;
case Geometry::TRIANGLE: return 0;
case Geometry::SQUARE: return 0;
case Geometry::TETRAHEDRON: return 0;
case Geometry::CUBE: return 0;
case Geometry::PENTATOPE: return 0;
default:
mfem_error ("ND2_4DFECollection: unknown geometry type.");
}
return 0; // Make some compilers happy
}
const int * ND2_4DFECollection::DofOrderForOrientation(Geometry::Type GeomType,
int Or)
const
{
static int ind_pos[] = { 0, 1 };
static int ind_neg[] = { -2, -1};
if (Or > 0)
{
return ind_pos;
}
return ind_neg;
}
const FiniteElement *
DivSkew1_4DFECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
{
switch (GeomType)
{
case Geometry::PENTATOPE: return &DivSkew0PentatopFE;
default:
mfem_error ("DivSkew1_4DFECollection: unknown geometry type 1.");
}
return &DivSkew0PentatopFE; // Make some compilers happy
}
int DivSkew1_4DFECollection::DofForGeometry(Geometry::Type GeomType) const
{
switch (GeomType)
{
case Geometry::POINT: return 0;
case Geometry::SEGMENT: return 0;
case Geometry::TRIANGLE: return 1;
case Geometry::SQUARE: return 0;
case Geometry::TETRAHEDRON: return 0;
case Geometry::CUBE: return 0;
case Geometry::PENTATOPE: return 0;
default:
mfem_error ("DivSkew1_4DFECollection: unknown geometry type 2.");
}
return 0; // Make some compilers happy
}
const int * DivSkew1_4DFECollection::DofOrderForOrientation(
Geometry::Type GeomType, int Or)
const
{
static int ind_pos[] = { 0 };
static int ind_neg[] = { -1 };
if (Or %2 == 0)
{
return ind_pos;
}
return ind_neg;
}
const FiniteElement *
RT0_3DFECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
@@ -1646,13 +1798,57 @@ const int *RT1_3DFECollection::DofOrderForOrientation(Geometry::Type GeomType,
}
}
const FiniteElement *
RT0_4DFECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
{
switch (GeomType)
{
case Geometry::TETRAHEDRON: return &TetrahedronFE;
case Geometry::PENTATOPE: return &PentatopeFE;
default:
mfem_error ("RT0_4DFECollection: unknown geometry type.");
}
return &PentatopeFE; // Make some compilers happy
}
int RT0_4DFECollection::DofForGeometry(Geometry::Type GeomType) const
{
switch (GeomType)
{
case Geometry::POINT: return 0;
case Geometry::SEGMENT: return 0;
case Geometry::TRIANGLE: return 0;
case Geometry::SQUARE: return 0;
case Geometry::TETRAHEDRON: return 1;
case Geometry::CUBE: return 0;
case Geometry::PENTATOPE: return 0;
default:
mfem_error ("RT0_4DFECollection: unknown geometry type.");
}
return 0; // Make some compilers happy
}
const int * RT0_4DFECollection::DofOrderForOrientation(Geometry::Type GeomType,
int Or)
const
{
static int ind_pos[] = { 0 };
static int ind_neg[] = { -1 };
if (GeomType == Geometry::TETRAHEDRON)
{
if (Or % 2 == 0) { return ind_pos; }
return ind_neg;
}
return NULL;
}
H1_FECollection::H1_FECollection(const int p, const int dim, const int btype)
: FiniteElementCollection(p)
, dim(dim)
{
MFEM_VERIFY(p >= 1, "H1_FECollection requires order >= 1.");
MFEM_VERIFY(dim >= 0 && dim <= 3, "H1_FECollection requires 0 <= dim <= 3.");
MFEM_VERIFY(dim >= 0 && dim <= 4, "H1_FECollection requires 0 <= dim <= 4.");
const int pm1 = p - 1, pm2 = pm1 - 1, pm3 = pm2 - 1, pm4 = pm3 - 1;
@@ -1953,6 +2149,20 @@ H1_FECollection::H1_FECollection(const int p, const int dim, const int btype)
}
}
}
if (dim >= 4)
{
H1_dof[Geometry::PENTATOPE] = (TriDof*pm3*pm4)/12;
H1_dof[Geometry::TESSERACT] = QuadDof*pm1*pm1;
if (b_type == BasisType::Positive)
{
mfem_error("H1_FECollection: BasisType::Positive not implemented");
}
else
{
H1_Elements[Geometry::PENTATOPE] = new H1_PentatopeElement(p, pt_type);
}
}
}
}
}
@@ -2330,6 +2540,38 @@ L2_FECollection::L2_FECollection(const int p, const int dim, const int btype,
OtherDofOrd[j] = j; // for Or == 0
}
}
else if (dim == 4)
{
if (b_type == BasisType::Positive)
{
mfem::err <<
"L2_FECollection::L2_FECollection : BasisType::Positive not implemented" <<
endl;
mfem_error();
}
else
{
L2_Elements[Geometry::PENTATOPE] =
new L2_PentatopeElement(p, btype);
// 2025 November: check this
L2_Elements[Geometry::TESSERACT] = new L2_HexahedronElement(p, btype);
}
L2_Elements[Geometry::PENTATOPE]->SetMapType(map_type);
L2_Elements[Geometry::TESSERACT]->SetMapType(map_type);
// All trace element use the default Gauss-Legendre nodal points
Tr_Elements[Geometry::TETRAHEDRON] = new L2_TetrahedronElement(p);
Tr_Elements[Geometry::CUBE] = new L2_HexahedronElement(p);
const int PentDof = L2_Elements[Geometry::PENTATOPE]->GetDof();
const int TessDof = L2_Elements[Geometry::TESSERACT]->GetDof();
const int MaxDof = std::max(PentDof, TessDof);
OtherDofOrd = new int[MaxDof];
for (int j = 0; j < MaxDof; j++)
{
OtherDofOrd[j] = j; // for Or == 0
}
}
else
{
mfem::err << "L2_FECollection::L2_FECollection : dim = "
@@ -2368,6 +2610,9 @@ const int *L2_FECollection::DofOrderForOrientation(Geometry::Type GeomType,
case Geometry::TETRAHEDRON:
return TetDofOrd[Or%24];
case Geometry::PENTATOPE:
return TetDofOrd[Or%120];
default:
return (Or == 0) ? OtherDofOrd : NULL;
}
@@ -2452,6 +2697,13 @@ RT_FECollection::RT_FECollection(const int order, const int dim,
RT_Elements[Geometry::PYRAMID] = new RT0PyrFiniteElement(false);
RT_dof[Geometry::PYRAMID] = 0;
}
else if (dim == 4)
{
RT_Elements[Geometry::PENTATOPE] = new RT_PentatopeElement(p);
RT_dof[Geometry::PENTATOPE] = p*pp1*(p + 2)*(p + 3)/6;
//TODO: tesseracts
}
else
{
MFEM_ABORT("invalid dim = " << dim);
@@ -2484,7 +2736,7 @@ void RT_FECollection::InitFaces(const int p, const int dim_,
MFEM_VERIFY(Quadrature1D::CheckOpen(op_type) != Quadrature1D::Invalid,
"invalid open point type");
const int pp1 = p + 1, pp2 = p + 2;
const int pp1 = p + 1, pp2 = p + 2, pp3 = p + 3;
for (int g = 0; g < Geometry::NumGeom; g++)
{
@@ -2504,6 +2756,10 @@ void RT_FECollection::InitFaces(const int p, const int dim_,
{
QuadDofOrd[i] = NULL;
}
for (int i = 0; i < 24; i++)
{
TetDofOrd[i] = NULL;
}
if (dim_ == 2)
{
@@ -2592,6 +2848,89 @@ void RT_FECollection::InitFaces(const int p, const int dim_,
}
}
}
else if (dim == 4)
{
L2_TetrahedronElement *l2_tet = new L2_TetrahedronElement(p, ob_type);
l2_tet->SetMapType(map_type);
RT_Elements[Geometry::TETRAHEDRON] = l2_tet;
RT_dof[Geometry::TETRAHEDRON] = pp1*pp2*pp3/6;
int TetDof = RT_dof[Geometry::TETRAHEDRON];
int TriDof2 = pp2*pp1/2;
TetDofOrd[0] = new int[24*TetDof];
for (int i = 1; i < 24; i++)
{
TetDofOrd[i] = TetDofOrd[i-1] + TetDof;
}
// see Mesh::GetTriOrientation in mesh/mesh.cpp,
// the constructor of H1_FECollection
for (int k=0; k<=p; k++)
{
for (int j=0; j+k<=p; j++)
{
for (int i=0; i+j+k<=p; i++)
{
int o = TetDof + TriDof2 - ((pp3-k)*(pp2-k)*(pp1-k))/6 - (pp2-j)*
(pp1-j)/2 - k*j + i;
int l = p-k-j-i;
TetDofOrd[0][o] = o;
TetDofOrd[1][o] = -1 - (TetDof + TriDof2 - ((pp3-k)*(pp2-k)*(pp1-k))/6 -
(pp2-j)*(pp1-j)/2 - k*j + l);
TetDofOrd[2][o] = TetDof + TriDof2 - ((pp3-k)*(pp2-k)*(pp1-k))/6 -
(pp2-i)*(pp1-i)/2 - k*i + l;
TetDofOrd[3][o] = -1 - (TetDof + TriDof2 - ((pp3-k)*(pp2-k)*(pp1-k))/6 -
(pp2-l)*(pp1-l)/2 - k*l + i);
TetDofOrd[4][o] = TetDof + TriDof2 - ((pp3-k)*(pp2-k)*(pp1-k))/6 -
(pp2-l)*(pp1-l)/2 - k*l + j;
TetDofOrd[5][o] = -1 - (TetDof + TriDof2 - ((pp3-k)*(pp2-k)*(pp1-k))/6 -
(pp2-i)*(pp1-i)/2 - k*i + j);
TetDofOrd[6][o] = TetDof + TriDof2 - ((pp3-j)*(pp2-j)*(pp1-j))/6 -
(pp2-i)*(pp1-i)/2 - j*i + k;
TetDofOrd[7][o] = -1 - (TetDof + TriDof2 - ((pp3-j)*(pp2-j)*(pp1-j))/6 -
(pp2-l)*(pp1-l)/2 - j*l + k);
TetDofOrd[8][o] = TetDof + TriDof2 - ((pp3-i)*(pp2-i)*(pp1-i))/6 -
(pp2-l)*(pp1-l)/2 - i*l + k;
TetDofOrd[9][o] = -1 - (TetDof + TriDof2 - ((pp3-l)*(pp2-l)*(pp1-l))/6 -
(pp2-i)*(pp1-i)/2 - l*i + k);
TetDofOrd[10][o] = TetDof + TriDof2 - ((pp3-l)*(pp2-l)*(pp1-l))/6 -
(pp2-j)*(pp1-j)/2 - l*j + k;
TetDofOrd[11][o] = -1 - (TetDof + TriDof2 - ((pp3-i)*(pp2-i)*(pp1-i))/6 -
(pp2-j)*(pp1-j)/2 - i*j + k);
TetDofOrd[12][o] = TetDof + TriDof2 - ((pp3-i)*(pp2-i)*(pp1-i))/6 -
(pp2-k)*(pp1-k)/2 - i*k + j;
TetDofOrd[13][o] = -1 - (TetDof + TriDof2 - ((pp3-l)*(pp2-l)*(pp1-l))/6 -
(pp2-k)*(pp1-k)/2 - l*k + j);
TetDofOrd[14][o] = TetDof + TriDof2 - ((pp3-l)*(pp2-l)*(pp1-l))/6 -
(pp2-k)*(pp1-k)/2 - l*k + i;
TetDofOrd[15][o] = -1 - (TetDof + TriDof2 - ((pp3-i)*(pp2-i)*(pp1-i))/6 -
(pp2-k)*(pp1-k)/2 - i*k + l);
TetDofOrd[16][o] = TetDof + TriDof2 - ((pp3-j)*(pp2-j)*(pp1-j))/6 -
(pp2-k)*(pp1-k)/2 - j*k + l;
TetDofOrd[17][o] = -1 - (TetDof + TriDof2 - ((pp3-j)*(pp2-j)*(pp1-j))/6 -
(pp2-k)*(pp1-k)/2 - j*k + i);
TetDofOrd[18][o] = TetDof + TriDof2 - ((pp3-j)*(pp2-j)*(pp1-j))/6 -
(pp2-l)*(pp1-l)/2 - j*l + i;
TetDofOrd[19][o] = -1 - (TetDof + TriDof2 - ((pp3-j)*(pp2-j)*(pp1-j))/6 -
(pp2-i)*(pp1-i)/2 - j*i + l);
TetDofOrd[20][o] = TetDof + TriDof2 - ((pp3-i)*(pp2-i)*(pp1-i))/6 -
(pp2-j)*(pp1-j)/2 - i*j + l;
TetDofOrd[21][o] = -1 - (TetDof + TriDof2 - ((pp3-l)*(pp2-l)*(pp1-l))/6 -
(pp2-j)*(pp1-j)/2 - l*j + i);
TetDofOrd[22][o] = TetDof + TriDof2 - ((pp3-l)*(pp2-l)*(pp1-l))/6 -
(pp2-i)*(pp1-i)/2 - l*i + j;
TetDofOrd[23][o] = -1 - (TetDof + TriDof2 - ((pp3-i)*(pp2-i)*(pp1-i))/6 -
(pp2-l)*(pp1-l)/2 - i*l + j);
if (!signs)
{
for (int m = 0; m < 24; m+=2)
{
TetDofOrd[m][o] = -1 - TetDofOrd[m][o];
}
}
}
}
}
}
}
const FiniteElement *
@@ -2625,6 +2964,10 @@ const int *RT_FECollection::DofOrderForOrientation(Geometry::Type GeomType,
{
return QuadDofOrd[Or%8];
}
else if (GeomType == Geometry::TETRAHEDRON)
{
return TetDofOrd[Or%24];
}
return NULL;
}
+85 -1
View File
@@ -94,6 +94,8 @@ public:
int HasFaceDofs(Geometry::Type geom, int p) const;
int HasPlanarDofs(Geometry::Type GeomType, int p) const;
virtual const FiniteElement *TraceFiniteElementForGeometry(
Geometry::Type GeomType) const
{
@@ -391,7 +393,7 @@ protected:
char rt_name[32];
FiniteElement *RT_Elements[Geometry::NumGeom];
int RT_dof[Geometry::NumGeom];
int *SegDofOrd[2], *TriDofOrd[6], *QuadDofOrd[8];
int *SegDofOrd[2], *TriDofOrd[6], *QuadDofOrd[8], *TetDofOrd[24];
// Initialize only the face elements
void InitFaces(const int p, const int dim, const int map_type,
@@ -746,6 +748,8 @@ private:
const TriLinear3DFiniteElement ParallelepipedFE;
const LinearWedgeFiniteElement WedgeFE;
const LinearPyramidFiniteElement PyramidFE;
const Linear4DFiniteElement PentatopeFE;
const QuadLinear4DFiniteElement TesseractFE;
public:
LinearFECollection() : FiniteElementCollection(1) {}
@@ -773,6 +777,7 @@ private:
const Quadratic3DFiniteElement TetrahedronFE;
const LagrangeHexFiniteElement ParallelepipedFE;
const H1_WedgeElement WedgeFE;
const Quadratic4DFiniteElement PentatopeFE;
public:
QuadraticFECollection()
@@ -1290,6 +1295,65 @@ public:
int GetContType() const override { return TANGENTIAL; }
};
class ND1_4DFECollection : public FiniteElementCollection
{
private:
const Nedelec1PentFiniteElement NedPentatopFE;
public:
ND1_4DFECollection() { }
virtual const FiniteElement *
FiniteElementForGeometry(Geometry::Type GeomType) const;
virtual int DofForGeometry(Geometry::Type GeomType) const;
virtual const int * DofOrderForOrientation(Geometry::Type GeomType,
int Or) const;
virtual const char * Name() const { return "ND1_4D"; }
};
class ND2_4DFECollection : public FiniteElementCollection
{
private:
const Nedelec1FullPentFiniteElement NedPentatopFE;
public:
ND2_4DFECollection() { }
virtual const FiniteElement *
FiniteElementForGeometry(Geometry::Type GeomType) const;
virtual int DofForGeometry(Geometry::Type GeomType) const;
virtual const int * DofOrderForOrientation(Geometry::Type GeomType,
int Or) const;
virtual const char * Name() const { return "ND2_4D"; }
};
class DivSkew1_4DFECollection : public FiniteElementCollection
{
private:
const DivSkew1PentFiniteElement DivSkew0PentatopFE;
public:
DivSkew1_4DFECollection() { }
virtual const FiniteElement *
FiniteElementForGeometry(Geometry::Type GeomType) const;
virtual int DofForGeometry(Geometry::Type GeomType) const;
virtual const int * DofOrderForOrientation(Geometry::Type GeomType,
int Or) const;
virtual const char * Name() const { return "F2K0_4D"; }
};
/** @brief First order Raviart-Thomas finite elements in 3D. This class is kept
only for backward compatibility, consider using RT_FECollection instead. */
class RT0_3DFECollection : public FiniteElementCollection
@@ -1341,6 +1405,26 @@ public:
int GetContType() const override { return NORMAL; }
};
/** First order Raviart-Thomas finite elements in 4D. */
class RT0_4DFECollection : public FiniteElementCollection
{
private:
const P0TetFiniteElement TetrahedronFE;
const RT0PentFiniteElement PentatopeFE;
public:
RT0_4DFECollection() { };
virtual const FiniteElement *
FiniteElementForGeometry(Geometry::Type GeomType) const;
virtual int DofForGeometry(Geometry::Type GeomType) const;
virtual const int * DofOrderForOrientation(Geometry::Type GeomType,
int Or) const;
virtual const char * Name() const { return "RT0_4D"; };
};
/// Discontinuous collection defined locally by a given finite element.
class Local_FECollection : public FiniteElementCollection
{
+356 -13
View File
@@ -58,8 +58,8 @@ DofsToVDofs<Ordering::byVDIM>(int ndofs, int vdim, Array<int> &dofs)
FiniteElementSpace::FiniteElementSpace()
: mesh(NULL), fec(NULL), vdim(0), ordering(Ordering::byNODES),
ndofs(0), nvdofs(0), nedofs(0), nfdofs(0), nbdofs(0),
bdofs(NULL),
ndofs(0), nvdofs(0), nedofs(0), nfdofs(0), nbdofs(0), npdofs(0),
bdofs(NULL), pdofs(NULL),
elem_dof(NULL), elem_fos(NULL), bdr_elem_dof(NULL), bdr_elem_fos(NULL),
face_dof(NULL),
NURBSext(NULL), own_ext(false),
@@ -319,6 +319,12 @@ void FiniteElementSpace::GetFaceVDofs(int i, Array<int> &vdofs) const
DofsToVDofs(vdofs);
}
void FiniteElementSpace::GetPlanarVDofs(int i, Array<int> &vdofs) const
{
GetPlanarDofs(i, vdofs);
DofsToVDofs(vdofs);
}
void FiniteElementSpace::GetEdgeVDofs(int i, Array<int> &vdofs) const
{
GetEdgeDofs(i, vdofs);
@@ -540,7 +546,13 @@ void FiniteElementSpace::GetEssentialVDofs(const Array<int> &bdr_attr_is_ess,
// local DOFs affected by boundary elements on other processors
if (Nonconforming())
{
Array<int> bdr_verts, bdr_edges, bdr_faces;
Array<int> bdr_verts, bdr_edges, bdr_faces, bdr_planars;
// if (mesh->Dimension() > 3)
// {
// mesh->ncmesh->GetBoundaryClosure(bdr_attr_is_ess, bdr_verts, bdr_edges,
// bdr_faces, bdr_planars);
// }
// else
mesh->ncmesh->GetBoundaryClosure(bdr_attr_is_ess, bdr_verts, bdr_edges,
bdr_faces);
for (auto v : bdr_verts)
@@ -582,6 +594,20 @@ void FiniteElementSpace::GetEssentialVDofs(const Array<int> &bdr_attr_is_ess,
}
MarkDofs(dofs, ess_vdofs);
}
for (int i = 0; i < bdr_planars.Size(); i++)
{
if (component < 0)
{
GetPlanarVDofs(bdr_planars[i], dofs);
}
else
{
GetPlanarVDofs(bdr_planars[i], dofs);
for (int d = 0; d < dofs.Size(); d++)
{ dofs[d] = DofToVDof(dofs[d], component); }
}
MarkDofs(dofs, ess_vdofs);
}
}
}
@@ -989,6 +1015,8 @@ void FiniteElementSpace::BuildConformingInterpolation() const
"This method should not be used with a ParFiniteElementSpace!");
#endif
if (mesh->Dimension() == 4) { BuildConformingInterpolation4D(); return; }
if (cP_is_set) { return; }
cP_is_set = true;
@@ -1271,6 +1299,178 @@ void FiniteElementSpace::BuildConformingInterpolation() const
}
}
void FiniteElementSpace::BuildConformingInterpolation4D() const
{
#if 0
#ifdef MFEM_USE_MPI
MFEM_VERIFY(dynamic_cast<const ParFiniteElementSpace*>(this) == NULL,
"This method should not be used with a ParFiniteElementSpace!");
#endif
if (cP_is_set) { return; }
cP_is_set = true;
// For each slave DOF, the dependency matrix will contain a row that
// expresses the slave DOF as a linear combination of its immediate master
// DOFs. Rows of independent DOFs will remain empty.
SparseMatrix deps(ndofs);
// collect local edge/planar/face dependencies
for (int entity = 1; entity <= 3; entity++)
{
const NCMesh::NCList &list = (entity > 2) ? mesh->ncmesh->GetFaceList()
/* */ : ( (entity > 1) ? mesh->ncmesh->GetPlanarList() :
mesh->ncmesh->GetEdgeList() );
if (!list.masters.size()) { continue; }
IsoparametricTransformation T;
if (entity > 2) { T.SetFE(&TetrahedronFE); }
else if (entity > 1) { T.SetFE(&TriangleFE); }
else { T.SetFE(&SegmentFE); }
Geometry::Type geom = (entity > 2) ? Geometry::TETRAHEDRON : ( (
entity > 1) ? Geometry::TRIANGLE : Geometry::SEGMENT );
const FiniteElement* fe = fec->FiniteElementForGeometry(geom);
if (!fe) { continue; }
Array<int> master_dofs, slave_dofs;
DenseMatrix I(fe->GetDof());
// loop through all master edges/faces, constrain their slave edges/faces
for (unsigned mi = 0; mi < list.masters.size(); mi++)
{
const NCMesh::Master &master = list.masters[mi];
GetEntityDofs4D(entity, master.index, master_dofs);
if (!master_dofs.Size()) { continue; }
// mfem::out << "--------------------\n";
// master_dofs.Print(mfem::out,master_dofs.Size());
for (int si = master.slaves_begin; si < master.slaves_end; si++)
{
const NCMesh::Slave &slave = list.slaves[si];
GetEntityDofs4D(entity, slave.index, slave_dofs);
if (!slave_dofs.Size()) { continue; }
slave.OrientedPointMatrix(T.GetPointMat());
T.FinalizeTransformation();
fe->GetLocalInterpolation(T, I);
// mfem::out << "********************\n";
// slave_dofs.Print(mfem::out,slave_dofs.Size());
// mfem::out << "++++++++++++++++++++\n";
// I.PrintMatlab(mfem::out);
// mfem::out << "++++++++++++++++++++\n";
// make each slave DOF dependent on all master DOFs
AddDependencies(deps, master_dofs, slave_dofs, I);
}
}
}
deps.Finalize();
// deps.PrintMatlab(mfem::out);
// DOFs that stayed independent are true DOFs
int n_true_dofs = 0;
for (int i = 0; i < ndofs; i++)
{
if (!deps.RowSize(i)) { n_true_dofs++; }
}
// if all dofs are true dofs leave cP and cR NULL
if (n_true_dofs == ndofs)
{
cP = cR = NULL; // will be treated as identities
return;
}
// create the conforming restriction matrix cR
int *cR_J;
{
int *cR_I = new int[n_true_dofs+1];
double *cR_A = new double[n_true_dofs];
cR_J = new int[n_true_dofs];
for (int i = 0; i < n_true_dofs; i++)
{
cR_I[i] = i;
cR_A[i] = 1.0;
}
cR_I[n_true_dofs] = n_true_dofs;
cR = new SparseMatrix(cR_I, cR_J, cR_A, n_true_dofs, ndofs);
}
// create the conforming prolongation matrix cP
cP = new SparseMatrix(ndofs, n_true_dofs);
Array<bool> finalized(ndofs);
finalized = false;
// put identity in the restriction and prolongation matrices for true DOFs
for (int i = 0, true_dof = 0; i < ndofs; i++)
{
if (!deps.RowSize(i))
{
cR_J[true_dof] = i;
cP->Add(i, true_dof++, 1.0);
finalized[i] = true;
}
}
// Now calculate cP rows of slave DOFs as combinations of cP rows of their
// master DOFs. It is possible that some slave DOFs depend on DOFs that are
// themselves slaves. Here we resolve such indirect constraints by first
// calculating rows of the cP matrix for DOFs whose master DOF cP rows are
// already known (in the first iteration these are the true DOFs). In the
// second iteration, slaves of slaves can be 'finalized' (given a row in the
// cP matrix), in the third iteration slaves of slaves of slaves, etc.
bool finished;
int n_finalized = n_true_dofs;
Array<int> cols;
Vector srow;
do
{
finished = true;
for (int dof = 0; dof < ndofs; dof++)
{
if (!finalized[dof] && DofFinalizable(dof, finalized, deps))
{
const int* dep_col = deps.GetRowColumns(dof);
const double* dep_coef = deps.GetRowEntries(dof);
int n_dep = deps.RowSize(dof);
for (int j = 0; j < n_dep; j++)
{
cP->GetRow(dep_col[j], cols, srow);
srow *= dep_coef[j];
cP->AddRow(dof, cols, srow);
}
finalized[dof] = true;
n_finalized++;
finished = false;
}
}
}
while (!finished);
// if everything is consistent (mesh, face orientations, etc.), we should
// be able to finalize all slave DOFs, otherwise it's a serious error
if (n_finalized != ndofs)
{
MFEM_ABORT("Error creating cP matrix.");
}
cP->Finalize();
if (vdim > 1)
{
MakeVDimMatrix(*cP);
MakeVDimMatrix(*cR);
}
#endif
}
void FiniteElementSpace::MakeVDimMatrix(SparseMatrix &mat) const
{
if (vdim == 1) { return; }
@@ -2304,8 +2504,10 @@ void FiniteElementSpace::UpdateNURBS()
nvdofs = 0;
nedofs = 0;
npdofs = 0;
nfdofs = 0;
nbdofs = 0;
pdofs = NULL;
bdofs = NULL;
delete face_dof;
@@ -2388,6 +2590,8 @@ void FiniteElementSpace::Construct()
face_dof = NULL;
ndofs = 0;
npdofs = 0;
pdofs = NULL;
nvdofs = nedofs = nfdofs = nbdofs = 0;
bdofs = NULL;
@@ -2460,6 +2664,24 @@ void FiniteElementSpace::Construct()
}
}
if (mesh->Dimension() >= 4 && mesh->GetNE())
{
// Here we assume that all planars in the mesh have the same base
// geometry -- the base geometry of the 0-th face element.
int pdof = fec->DofForGeometry(mesh->GetPlanarBaseGeometry(0));
if (pdof > 0)
{
pdofs = new int[mesh->GetNPlanars()+1];
pdofs[0] = 0;
for (int i = 0; i < mesh->GetNPlanars(); i++)
{
npdofs += pdof;
// npdofs += fec->DofForGeometry(mesh->GetPlanarBaseGeometry(i));
pdofs[i+1] = npdofs;
}
}
}
// assign internal ("bubble") DOFs
if (mesh->GetNE() && dim > 0)
{
@@ -2483,7 +2705,7 @@ void FiniteElementSpace::Construct()
}
}
ndofs = nvdofs + nedofs + nfdofs + nbdofs;
ndofs = nvdofs + nedofs + npdofs + nfdofs + nbdofs;
ConstructDoFTransArray();
@@ -2756,7 +2978,7 @@ void FiniteElementSpace::GetElementDofs(int elem, Array<int> &dofs,
return;
}
Array<int> V, E, Eo, F, Fo; // TODO: LocalArray
Array<int> V, E, Eo, F, Fo, P, Po; // TODO: LocalArray
int dim = mesh->Dimension();
auto geom = mesh->GetElementGeometry(elem);
@@ -2765,9 +2987,11 @@ void FiniteElementSpace::GetElementDofs(int elem, Array<int> &dofs,
int nv = fec->GetNumDof(Geometry::POINT, order);
int ne = (dim > 1) ? fec->GetNumDof(Geometry::SEGMENT, order) : 0;
int nb = (dim > 0) ? fec->GetNumDof(geom, order) : 0;
int np = (dim > 3) ? fec->GetNumDof(Geometry::TRIANGLE, order) : 0;
if (nv) { mesh->GetElementVertices(elem, V); }
if (ne) { mesh->GetElementEdges(elem, E, Eo); }
if (np) { mesh->GetElementPlanars(elem, P, Po); }
int nfd = 0;
if (dim > 2 && fec->HasFaceDofs(geom, order))
@@ -2787,7 +3011,7 @@ void FiniteElementSpace::GetElementDofs(int elem, Array<int> &dofs,
}
dofs.SetSize(0);
dofs.Reserve(nv*V.Size() + ne*E.Size() + nfd + nb);
dofs.Reserve(nv*V.Size() + ne*E.Size() + np*P.Size() + nfd + nb);
if (nv) // vertex DOFs
{
@@ -2814,6 +3038,20 @@ void FiniteElementSpace::GetElementDofs(int elem, Array<int> &dofs,
}
}
if(np)
{
for (int i = 0; i < P.Size(); i++)
{
int pbase = /* IsVariableOrder() ? FindEdgeDof(E[i], ne) : */P[i]*np;
const int *ind = fec->GetDofOrdering(Geometry::TRIANGLE, order, Po[i]);
for (int j = 0; j < np; j++)
{
dofs.Append(EncodeDof(nvdofs + nedofs + pbase, ind[j]));
}
}
}
if (nfd) // face DOFs
{
for (int i = 0; i < F.Size(); i++)
@@ -2826,7 +3064,7 @@ void FiniteElementSpace::GetElementDofs(int elem, Array<int> &dofs,
for (int j = 0; j < nf; j++)
{
dofs.Append(EncodeDof(nvdofs + nedofs + fbase, ind[j]));
dofs.Append(EncodeDof(nvdofs + nedofs + npdofs + fbase, ind[j]));
}
}
}
@@ -2834,7 +3072,7 @@ void FiniteElementSpace::GetElementDofs(int elem, Array<int> &dofs,
if (nb) // interior ("bubble") DOFs
{
int bbase = bdofs ? bdofs[elem] : elem*nb;
bbase += nvdofs + nedofs + nfdofs;
bbase += nvdofs + nedofs + npdofs + nfdofs;
for (int j = 0; j < nb; j++)
{
@@ -2872,7 +3110,7 @@ void FiniteElementSpace::GetBdrElementDofs(int bel, Array<int> &dofs,
return;
}
Array<int> V, E, Eo; // TODO: LocalArray
Array<int> V, E, Eo, P, Po; // TODO: LocalArray
int F, oF;
int dim = mesh->Dimension();
@@ -2889,9 +3127,13 @@ void FiniteElementSpace::GetBdrElementDofs(int bel, Array<int> &dofs,
int nv = fec->GetNumDof(Geometry::POINT, order);
int ne = (dim > 1) ? fec->GetNumDof(Geometry::SEGMENT, order) : 0;
int nf = (dim > 2) ? fec->GetNumDof(geom, order) : 0;
int np = (dim > 3) ? fec->DofForGeometry(Geometry::TRIANGLE) : (0);
if (nv) { mesh->GetBdrElementVertices(bel, V); }
if (ne) { mesh->GetBdrElementEdges(bel, E, Eo); }
if (np) { mesh->GetBdrElementPlanars(bel, P, Po); }
if (nf)
{
mesh->GetBdrElementFace(bel, &F, &oF);
@@ -2908,7 +3150,7 @@ void FiniteElementSpace::GetBdrElementDofs(int bel, Array<int> &dofs,
}
dofs.SetSize(0);
dofs.Reserve(nv*V.Size() + ne*E.Size() + nf);
dofs.Reserve(nv*V.Size() + ne*E.Size() + np * P.Size() + nf);
if (nv) // vertex DOFs
{
@@ -2935,6 +3177,20 @@ void FiniteElementSpace::GetBdrElementDofs(int bel, Array<int> &dofs,
}
}
if(np)
{
for (int i = 0; i < P.Size(); i++)
{
int pbase = /* IsVariableOrder() ? FindEdgeDof(E[i], ne) : */P[i]*np;
const int *ind = fec->GetDofOrdering(Geometry::TRIANGLE, order, Po[i]);
for (int j = 0; j < np; j++)
{
dofs.Append(EncodeDof(nvdofs + nedofs + pbase, ind[j]));
}
}
}
if (nf) // face DOFs
{
int fbase = (var_face_dofs.Size() > 0) ? FindFaceDof(F, nf) : F*nf;
@@ -3004,10 +3260,12 @@ int FiniteElementSpace::GetFaceDofs(int face, Array<int> &dofs,
// for 1D, 2D and 3D faces
int nv = fec->GetNumDof(Geometry::POINT, order);
int ne = (dim > 1) ? fec->GetNumDof(Geometry::SEGMENT, order) : 0;
int np = (dim > 3) ? fec->GetNumDof(Geometry::TRIANGLE, order) : 0;
Array<int> V, E, Eo;
Array<int> V, E, Eo, P, Po;
if (nv) { mesh->GetFaceVertices(face, V); }
if (ne) { mesh->GetFaceEdges(face, E, Eo); }
if (np) { mesh->GetFacePlanars(face, P, Po); }
dofs.SetSize(0);
dofs.Reserve(V.Size() * nv + E.Size() * ne + nf);
@@ -3035,14 +3293,92 @@ int FiniteElementSpace::GetFaceDofs(int face, Array<int> &dofs,
}
}
}
if(np)
{
for (int i = 0; i < P.Size(); i++)
{
int pbase = /* IsVariableOrder() ? FindEdgeDof(E[i], ne) : */P[i]*np;
const int *ind = fec->GetDofOrdering(Geometry::TRIANGLE, order, Po[i]);
for (int j = 0; j < np; j++)
{
dofs.Append(EncodeDof(nvdofs + nedofs + pbase, ind[j]));
}
}
}
for (int j = 0; j < nf; j++)
{
dofs.Append(nvdofs + nedofs + fbase + j);
dofs.Append(nvdofs + nedofs + npdofs + fbase + j);
}
return order;
}
void FiniteElementSpace::GetPlanarDofs(int planar, Array<int> &dofs) const
{
MFEM_VERIFY(!orders_changed, msg_orders_changed);
// if (planar_dof)
// {
// planar_dof->GetRow(planar, dofs);
// return;
// }
Array<int> V, E, Eo; // TODO: LocalArray
int dim = mesh->Dimension();
int order = fec->GetOrder();
// if (IsVariableOrder()) // determine order from adjacent element
// {
// int elem, info;
// mesh->GetBdrElementAdjacentElement(bel, elem, info);
// order = elem_order[elem];
// }
int nv = fec->GetNumDof(Geometry::POINT, order);
int ne = (dim > 1) ? fec->GetNumDof(Geometry::SEGMENT, order) : 0;
int np = fec->GetNumDof(Geometry::TRIANGLE, order);
if (nv) { mesh->GetPlanVertices(planar, V); }
if (ne) { mesh->GetPlanarEdges(planar, E, Eo); }
dofs.SetSize(0);
dofs.Reserve(nv*V.Size() + ne*E.Size() + np);
if (nv) // vertex DOFs
{
for (int i = 0; i < V.Size(); i++)
{
for (int j = 0; j < nv; j++)
{
dofs.Append(V[i]*nv + j);
}
}
}
if (ne) // edge DOFs
{
for (int i = 0; i < E.Size(); i++)
{
int ebase = IsVariableOrder() ? FindEdgeDof(E[i], ne) : E[i]*ne;
const int *ind = fec->GetDofOrdering(Geometry::SEGMENT, order, Eo[i]);
for (int j = 0; j < ne; j++)
{
dofs.Append(EncodeDof(nvdofs + ebase, ind[j]));
}
}
}
int pbase = planar*np;
for (int i = 0; i < np; i++)
{
dofs.Append(nvdofs + nedofs + pbase + i);
}
}
int FiniteElementSpace::GetEdgeDofs(int edge, Array<int> &dofs,
int variant) const
{
@@ -3109,7 +3445,7 @@ void FiniteElementSpace::GetElementInteriorDofs(int i, Array<int> &dofs) const
int base = bdofs ? bdofs[i] : i*nb;
dofs.SetSize(nb);
base += nvdofs + nedofs + nfdofs;
base += nvdofs + nedofs + npdofs + nfdofs;
for (int j = 0; j < nb; j++)
{
dofs[j] = base + j;
@@ -3264,6 +3600,11 @@ const FiniteElement *FiniteElementSpace::GetFaceElement(int i) const
return fe;
}
const FiniteElement *FiniteElementSpace::GetPlanarElement(int i) const
{
return fec->FiniteElementForGeometry(mesh->GetPlanarBaseGeometry(i));
}
const FiniteElement *FiniteElementSpace::GetEdgeElement(int i,
int variant) const
{
@@ -3333,6 +3674,8 @@ void FiniteElementSpace::Destroy()
delete bdr_elem_fos;
delete face_dof;
delete [] bdofs;
delete [] pdofs;
}
ceed::RemoveBasisAndRestriction(this);
}
+14 -2
View File
@@ -245,9 +245,9 @@ protected:
to be of the default order (fec->GetOrder()). */
Array<char> elem_order;
int nvdofs, nedofs, nfdofs, nbdofs;
int nvdofs, nedofs, nfdofs, nbdofs, npdofs;
int uni_fdof; ///< # of single face DOFs if all faces uniform; -1 otherwise
int *bdofs; ///< internal DOFs of elements if mixed/var-order; NULL otherwise
int *bdofs, *pdofs; ///< internal DOFs of elements if mixed/var-order; NULL otherwise
/** Variable order spaces only: DOF assignments for edges and faces, see
docs in MakeDofTable. For constant order spaces the tables are empty. */
@@ -396,6 +396,7 @@ protected:
/// Calculate the cP and cR matrices for a nonconforming mesh.
void BuildConformingInterpolation() const;
void BuildConformingInterpolation4D() const;
static void AddDependencies(SparseMatrix& deps, Array<int>& master_dofs,
Array<int>& slave_dofs, DenseMatrix& I,
@@ -730,6 +731,7 @@ public:
int GetNVDofs() const { return nvdofs; }
/// Number of all scalar edge-interior dofs
int GetNEDofs() const { return nedofs; }
int GetNPDofs() const { return npdofs; }
/// Number of all scalar face-interior dofs
int GetNFDofs() const { return nfdofs; }
@@ -745,6 +747,9 @@ public:
the edges. */
inline int GetNF() const { return mesh->GetNumFaces(); }
/// Returns number of planars (i.e. co-dimension 2 entities) in the mesh.
inline int GetNP() const { return mesh->GetNPlanars(); }
/// Returns number of boundary elements in the mesh.
inline int GetNBE() const { return mesh->GetNBE(); }
@@ -786,6 +791,8 @@ public:
int GetBdrAttribute(int i) const { return mesh->GetBdrAttribute(i); }
virtual void GetPlanarDofs(int i, Array<int> &dofs) const;
/// @anchor getdof @name Local DoF Access Members
/// These member functions produce arrays of local degree of freedom
/// indices, see @ref ldof. If @b vdim == 1 these indices can be used to
@@ -1087,6 +1094,9 @@ public:
/// not necessarily equal to 1. See GetFaceDofs() for more information.
void GetFaceVDofs(int i, Array<int> &vdofs) const;
/// Returns indexes of degrees of freedom for i'th planar element (4D).
void GetPlanarVDofs(int i, Array<int> &vdofs) const;
/// @brief Returns the indices of the degrees of freedom for the specified
/// edge, including the DOFs for the vertices of the edge.
///
@@ -1178,6 +1188,8 @@ public:
points.*/
const FiniteElement *GetFaceElement(int i) const;
const FiniteElement *GetPlanarElement(int i) const;
/** @brief Returns pointer to the FiniteElement in the FiniteElementCollection
associated with i'th edge in the mesh object. */
const FiniteElement *GetEdgeElement(int i, int variant = 0) const;
+371 -39
View File
@@ -19,11 +19,11 @@ namespace mfem
const char *Geometry::Name[NumGeom] =
{
"Point", "Segment", "Triangle", "Square", "Tetrahedron", "Cube", "Prism",
"Pyramid"
"Pyramid", "Pentatope", "Tesseract"
};
const real_t Geometry::Volume[NumGeom] =
{ 1.0, 1.0, 0.5, 1.0, 1./6, 1.0, 0.5, 1./3 };
{ 1.0, 1.0, 0.5, 1.0, 1./6, 1.0, 0.5, 1./3, 1./24., 1.0 };
Geometry::Geometry()
{
@@ -165,6 +165,36 @@ Geometry::Geometry()
GeomVert[7]->IntPoint(4).y = 0.0;
GeomVert[7]->IntPoint(4).z = 1.0;
// Vertices for Geometry::PENTATOPE
GeomVert[8] = new IntegrationRule(5);
GeomVert[8]->IntPoint(0).x = 0.0;
GeomVert[8]->IntPoint(0).y = 0.0;
GeomVert[8]->IntPoint(0).z = 0.0;
GeomVert[8]->IntPoint(0).t = 0.0;
GeomVert[8]->IntPoint(1).x = 1.0;
GeomVert[8]->IntPoint(1).y = 0.0;
GeomVert[8]->IntPoint(1).z = 0.0;
GeomVert[8]->IntPoint(1).t = 0.0;
GeomVert[8]->IntPoint(2).x = 0.0;
GeomVert[8]->IntPoint(2).y = 1.0;
GeomVert[8]->IntPoint(2).z = 0.0;
GeomVert[8]->IntPoint(2).t = 0.0;
GeomVert[8]->IntPoint(3).x = 0.0;
GeomVert[8]->IntPoint(3).y = 0.0;
GeomVert[8]->IntPoint(3).z = 1.0;
GeomVert[8]->IntPoint(3).t = 0.0;
GeomVert[8]->IntPoint(4).x = 0.0;
GeomVert[8]->IntPoint(4).y = 0.0;
GeomVert[8]->IntPoint(4).z = 0.0;
GeomVert[8]->IntPoint(4).t = 1.0;
// Vertices for Geometry::TESSERACT
// TODO
GeomCenter[POINT].x = 0.0;
GeomCenter[POINT].y = 0.0;
GeomCenter[POINT].z = 0.0;
@@ -197,6 +227,14 @@ Geometry::Geometry()
GeomCenter[PYRAMID].y = 0.375;
GeomCenter[PYRAMID].z = 0.25;
GeomCenter[PENTATOPE].x = 0.2;
GeomCenter[PENTATOPE].y = 0.2;
GeomCenter[PENTATOPE].z = 0.2;
GeomCenter[PENTATOPE].t = 0.2;
// GeomCenter[TESSERACT]
// TODO
GeomToPerfGeomJac[POINT] = NULL;
GeomToPerfGeomJac[SEGMENT] = new DenseMatrix(1);
GeomToPerfGeomJac[TRIANGLE] = new DenseMatrix(2);
@@ -205,6 +243,7 @@ Geometry::Geometry()
GeomToPerfGeomJac[CUBE] = new DenseMatrix(3);
GeomToPerfGeomJac[PRISM] = new DenseMatrix(3);
GeomToPerfGeomJac[PYRAMID] = new DenseMatrix(3);
GeomToPerfGeomJac[PENTATOPE] = new DenseMatrix(4);
PerfGeomToGeomJac[POINT] = NULL;
PerfGeomToGeomJac[SEGMENT] = NULL;
@@ -214,6 +253,7 @@ Geometry::Geometry()
PerfGeomToGeomJac[CUBE] = NULL;
PerfGeomToGeomJac[PRISM] = new DenseMatrix(3);
PerfGeomToGeomJac[PYRAMID] = new DenseMatrix(3);
PerfGeomToGeomJac[PENTATOPE] = new DenseMatrix(4);
GeomToPerfGeomJac[SEGMENT]->Diag(1.0, 1);
{
@@ -250,6 +290,16 @@ Geometry::Geometry()
*GeomToPerfGeomJac[PYRAMID] = pyr_T.Jacobian();
CalcInverse(pyr_T.Jacobian(), *PerfGeomToGeomJac[PYRAMID]);
}
{
Linear4DFiniteElement PentFE;
IsoparametricTransformation pent_T;
pent_T.SetFE(&PentFE);
GetPerfPointMat (PENTATOPE, pent_T.GetPointMat());
// pent_T.FinalizeTransformation();
pent_T.SetIntPoint(&GeomCenter[PENTATOPE]);
*GeomToPerfGeomJac[PENTATOPE] = pent_T.Jacobian();
CalcInverse(pent_T.Jacobian(), *PerfGeomToGeomJac[PENTATOPE]);
}
}
template <Geometry::Type GEOM>
@@ -302,6 +352,8 @@ const IntegrationRule *Geometry::GetVertices(int GeomType) const
case Geometry::CUBE: return GeomVert[5];
case Geometry::PRISM: return GeomVert[6];
case Geometry::PYRAMID: return GeomVert[7];
case Geometry::PENTATOPE: return GeomVert[8];
case Geometry::TESSERACT: return GeomVert[9];
case Geometry::INVALID:
case Geometry::NUM_GEOMETRIES:
mfem_error("Geometry::GetVertices(...)");
@@ -399,6 +451,45 @@ void Geometry::GetRandomPoint(int GeomType, IntegrationPoint &ip)
ip.x = 1.0 - z;
}
break;
case Geometry::PENTATOPE:
ip.x = real_t(rand()) / real_t(RAND_MAX);
ip.y = real_t(rand()) / real_t(RAND_MAX);
ip.z = real_t(rand()) / real_t(RAND_MAX);
ip.t = real_t(rand()) / real_t(RAND_MAX);
// map to the triangular 4D wedge obtained by extruding the reference
// tetrahedron in t direction
// needs to be updated
// if (ip.x + ip.y > 1.0)
// {
// ip.x = 1.0 - ip.x;
// ip.y = 1.0 - ip.y;
// }
// // split the prism into 3 parts: 1 is the reference tet, and the
// // other two tets (as given below) are mapped to the reference tet
// if (ip.x + ip.z > 1.0)
// {
// // tet with vertices: (0,0,1),(1,0,1),(0,1,1),(1,0,0)
// ip.x = ip.x + ip.z - 1.0;
// // ip.y = ip.y;
// ip.z = 1.0 - ip.z;
// // mapped to: (0,0,0),(1,0,0),(0,1,0),(0,0,1)
// }
// else if (ip.x + ip.y + ip.z > 1.0)
// {
// // tet with vertices: (0,1,1),(0,1,0),(0,0,1),(1,0,0)
// real_t x = ip.x;
// ip.x = 1.0 - x - ip.z;
// ip.y = 1.0 - x - ip.y;
// ip.z = x;
// // mapped to: (0,0,0),(1,0,0),(0,1,0),(0,0,1)
// }
// break;
case Geometry::TESSERACT:
ip.x = real_t(rand()) / real_t(RAND_MAX);
ip.y = real_t(rand()) / real_t(RAND_MAX);
ip.z = real_t(rand()) / real_t(RAND_MAX);
ip.t = real_t(rand()) / real_t(RAND_MAX);
break;
case Geometry::INVALID:
case Geometry::NUM_GEOMETRIES:
MFEM_ABORT("Unknown type of reference element!");
@@ -465,6 +556,14 @@ bool Geometry::CheckPoint(int GeomType, const IntegrationPoint &ip)
if (ip.x < 0.0 || ip.y < 0.0 || ip.x+ip.z > 1.0 || ip.y+ip.z > 1.0 ||
ip.z < 0.0 || ip.z > 1.0) { return false; }
break;
case Geometry::PENTATOPE:
if (ip.x < 0.0 || ip.y < 0.0 || ip.z < 0.0 || ip.t < 0 ||
ip.x+ip.y+ip.z+ip.t > 1.0) { return false; }
break;
case Geometry::TESSERACT:
if (ip.x < 0.0 || ip.x > 1.0 || ip.y < 0.0 || ip.y > 1.0 ||
ip.z < 0.0 || ip.z > 1.0 || ip.t < 0.0 || ip.t > 1.0) { return false; }
break;
case Geometry::INVALID:
case Geometry::NUM_GEOMETRIES:
MFEM_ABORT("Unknown type of reference element!");
@@ -548,6 +647,29 @@ bool Geometry::CheckPoint(int GeomType, const IntegrationPoint &ip, real_t eps)
return false;
}
break;
case Geometry::PENTATOPE:
if ( internal::FuzzyLT(ip.x, 0.0, eps)
|| internal::FuzzyLT(ip.y, 0.0, eps)
|| internal::FuzzyLT(ip.z, 0.0, eps)
|| internal::FuzzyLT(ip.t, 0.0, eps)
|| internal::FuzzyGT(ip.x+ip.y+ip.z+ip.t, 1.0, eps) )
{
return false;
}
break;
case Geometry::TESSERACT:
if ( internal::FuzzyLT(ip.x, 0.0, eps)
|| internal::FuzzyGT(ip.x, 1.0, eps)
|| internal::FuzzyLT(ip.y, 0.0, eps)
|| internal::FuzzyGT(ip.y, 1.0, eps)
|| internal::FuzzyLT(ip.z, 0.0, eps)
|| internal::FuzzyGT(ip.z, 1.0, eps)
|| internal::FuzzyLT(ip.t, 0.0, eps)
|| internal::FuzzyGT(ip.t, 1.0, eps) )
{
return false;
}
break;
case Geometry::INVALID:
case Geometry::NUM_GEOMETRIES:
MFEM_ABORT("Unknown type of reference element!");
@@ -610,6 +732,81 @@ inline bool ProjectTriangle(real_t &x, real_t &y)
return true;
}
inline bool ProjectTetrahedron(double &x, double &y, double &z)
{
if (z < 0.0)
{
z = 0.0;
internal::ProjectTriangle(x, y);
return false;
}
if (y < 0.0)
{
y = 0.0;
internal::ProjectTriangle(x, z);
return false;
}
if (x < 0.0)
{
x = 0.0;
internal::ProjectTriangle(y, z);
return false;
}
const double l4 = 1.0-x-y-z;
if (l4 < 0.0)
{
const double l4_3 = l4/3;
x += l4_3;
y += l4_3;
internal::ProjectTriangle(x, y);
z = 1.0-x-y;
return false;
}
return true;
}
inline bool ProjectPentatope(double &x, double &y, double &z, double &t)
{
if (t < 0.0)
{
t = 0.0;
internal::ProjectTetrahedron(x, y, z);
return false;
}
if (z < 0.0)
{
z = 0.0;
internal::ProjectTetrahedron(x, y, t);
return false;
}
if (y < 0.0)
{
y = 0.0;
internal::ProjectTetrahedron(x, z, t);
return false;
}
if (x < 0.0)
{
x = 0.0;
internal::ProjectTetrahedron(y, z, t);
return false;
}
const double l5 = 1.0-x-y-z-t;
if (l5 < 0.0)
{
const double l5_4 = l5/4;
// TODO
// In Geometry::ProjectPoint 4d origianlly had const double l5_4 = l5/5
x += l5_4;
y += l5_4;
z += l5_4;
internal::ProjectTetrahedron(x, y, z);
t = 1.0-x-y-z;
return false;
}
return true;
}
}
// static method
@@ -675,6 +872,22 @@ bool Geometry::ProjectPoint(int GeomType, const IntegrationPoint &beg,
};
return internal::IntersectSegment<6,3>(lbeg, lend, end);
}
case Geometry::PENTATOPE:
{
real_t lend[5] = { end.x, end.y, end.z, end.t, fone-end.x-end.y-end.z-end.t };
real_t lbeg[5] = { beg.x, beg.y, beg.z, beg.t, fone-beg.x-beg.y-beg.z-beg.t };
return internal::IntersectSegment<5,4>(lbeg,lend,end);
}
case Geometry::TESSERACT:
{
real_t lend[8] = { end.x, end.y, end.z, end.t,
fone-end.x, fone-end.y, fone-end.z, fone-end.t
};
real_t lbeg[8] = { beg.x, beg.y, beg.z, beg.t,
fone-beg.x, fone-beg.y, fone-beg.z, fone-beg.t
};
return internal::IntersectSegment<8,3>(lbeg, lend, end);
}
case Geometry::INVALID:
case Geometry::NUM_GEOMETRIES:
MFEM_ABORT("Unknown type of reference element!");
@@ -717,35 +930,7 @@ bool Geometry::ProjectPoint(int GeomType, IntegrationPoint &ip)
case TETRAHEDRON:
{
if (ip.z < 0.0)
{
ip.z = 0.0;
internal::ProjectTriangle(ip.x, ip.y);
return false;
}
if (ip.y < 0.0)
{
ip.y = 0.0;
internal::ProjectTriangle(ip.x, ip.z);
return false;
}
if (ip.x < 0.0)
{
ip.x = 0.0;
internal::ProjectTriangle(ip.y, ip.z);
return false;
}
const real_t l4 = 1.0-ip.x-ip.y-ip.z;
if (l4 < 0.0)
{
const real_t l4_3 = l4/3;
ip.x += l4_3;
ip.y += l4_3;
internal::ProjectTriangle(ip.x, ip.y);
ip.z = 1.0-ip.x-ip.y;
return false;
}
return true;
return internal::ProjectTetrahedron(ip.x, ip.y, ip.z);
}
case CUBE:
@@ -810,6 +995,29 @@ bool Geometry::ProjectPoint(int GeomType, IntegrationPoint &ip)
}
}
case PENTATOPE:
{
return internal::ProjectPentatope(ip.x, ip.y, ip.z, ip.t);
}
case TESSERACT:
{
bool in_x, in_y, in_z, in_t;
if (ip.x < 0.0) { in_x = false; ip.x = 0.0; }
else if (ip.x > 1.0) { in_x = false; ip.x = 1.0; }
else { in_x = true; }
if (ip.y < 0.0) { in_y = false; ip.y = 0.0; }
else if (ip.y > 1.0) { in_y = false; ip.y = 1.0; }
else { in_y = true; }
if (ip.z < 0.0) { in_z = false; ip.z = 0.0; }
else if (ip.z > 1.0) { in_z = false; ip.z = 1.0; }
else { in_z = true; }
if (ip.t < 0.0) { in_t = false; ip.t = 0.0; }
else if (ip.t > 1.0) { in_t = false; ip.t = 1.0; }
else { in_t = true; }
return in_x && in_y && in_z && in_t;
}
case Geometry::POINT:
MFEM_ABORT("Reference element type is not supported!");
case Geometry::INVALID:
@@ -898,6 +1106,42 @@ void Geometry::GetPerfPointMat(int GeomType, DenseMatrix &pm) const
}
break;
case Geometry::PENTATOPE:
{
pm.SetSize(4,5);
pm(0,0) = 0.0; pm(1,0) = 0.0; pm(2,0) = 0.0; pm(3,0) = 0.0;
pm(0,1) = 1.0; pm(1,1) = 0.0; pm(2,1) = 0.0; pm(3,1) = 0.0;
pm(0,2) = 0.5; pm(1,2) = 0.86602540378443864676; pm(2,2) = 0.0; pm(3,2) = 0.0;
pm(0,3) = 0.5; pm(1,3) = 0.28867513459481288225;
pm(2,3) = 0.81649658092772603273; pm(3,3) = 0.0;
pm(0,4) = 0.5; pm(1,4) = 0.28867513459481288225;
pm(2,4) = 0.20412414523193150819; pm(3,4) = 0.7905694150420948330;
}
break;
case Geometry::TESSERACT:
{
pm.SetSize (4, 16);
pm(0,0) = 0.0; pm(1,0) = 0.0; pm(2,0) = 0.0; pm(4,0) = 0.0;
pm(0,1) = 1.0; pm(1,1) = 0.0; pm(2,1) = 0.0; pm(4,1) = 0.0;
pm(0,2) = 1.0; pm(1,2) = 1.0; pm(2,2) = 0.0; pm(4,2) = 0.0;
pm(0,3) = 0.0; pm(1,3) = 1.0; pm(2,3) = 0.0; pm(4,3) = 0.0;
pm(0,4) = 0.0; pm(1,4) = 0.0; pm(2,4) = 1.0; pm(4,4) = 0.0;
pm(0,5) = 1.0; pm(1,5) = 0.0; pm(2,5) = 1.0; pm(4,5) = 0.0;
pm(0,6) = 1.0; pm(1,6) = 1.0; pm(2,6) = 1.0; pm(4,6) = 0.0;
pm(0,7) = 0.0; pm(1,7) = 1.0; pm(2,7) = 1.0; pm(4,7) = 0.0;
pm(0,8) = 0.0; pm(1,8) = 0.0; pm(2,8) = 0.0; pm(4,8) = 1.0;
pm(0,9) = 1.0; pm(1,9) = 0.0; pm(2,9) = 0.0; pm(4,9) = 1.0;
pm(0,10) = 1.0; pm(1,10) = 1.0; pm(2,10) = 0.0; pm(4,10) = 1.0;
pm(0,11) = 0.0; pm(1,11) = 1.0; pm(2,11) = 0.0; pm(4,11) = 1.0;
pm(0,12) = 0.0; pm(1,12) = 0.0; pm(2,12) = 1.0; pm(4,12) = 1.0;
pm(0,13) = 1.0; pm(1,13) = 0.0; pm(2,13) = 1.0; pm(4,13) = 1.0;
pm(0,14) = 1.0; pm(1,14) = 1.0; pm(2,14) = 1.0; pm(4,14) = 1.0;
pm(0,15) = 0.0; pm(1,15) = 1.0; pm(2,15) = 1.0; pm(4,15) = 1.0;
}
break;
case Geometry::POINT:
MFEM_ABORT("Reference element type is not supported!");
case Geometry::INVALID:
@@ -919,13 +1163,13 @@ void Geometry::JacToPerfJac(int GeomType, const DenseMatrix &J,
}
}
const int Geometry::NumBdrArray[NumGeom] = { 0, 2, 3, 4, 4, 6, 5, 5 };
const int Geometry::Dimension[NumGeom] = { 0, 1, 2, 2, 3, 3, 3, 3 };
const int Geometry::DimStart[MaxDim+2] =
{ POINT, SEGMENT, TRIANGLE, TETRAHEDRON, NUM_GEOMETRIES };
const int Geometry::NumVerts[NumGeom] = { 1, 2, 3, 4, 4, 8, 6, 5 };
const int Geometry::NumEdges[NumGeom] = { 0, 1, 3, 4, 6, 12, 9, 8 };
const int Geometry::NumFaces[NumGeom] = { 0, 0, 1, 1, 4, 6, 5, 5 };
const int Geometry::NumBdrArray[NumGeom] = { 0, 2, 3, 4, 4, 6, 5, 5, 5, 24 };
const int Geometry::Dimension[NumGeom] = { 0, 1, 2, 2, 3, 3, 3, 3, 4, 4 };
const int Geometry::DimStart[MaxDim+2] =
{ POINT, SEGMENT, TRIANGLE, TETRAHEDRON, PENTATOPE, NUM_GEOMETRIES };
const int Geometry::NumVerts[NumGeom] = { 1, 2, 3, 4, 4, 8, 6, 5, 5, 16 };
const int Geometry::NumEdges[NumGeom] = { 0, 1, 3, 4, 6, 12, 9, 8, 10, 32 };
const int Geometry::NumFaces[NumGeom] = { 0, 0, 1, 1, 4, 6, 5, 5, 5, 24 };
const int Geometry::
Constants<Geometry::POINT>::Orient[1][1] = {{0}};
@@ -1096,6 +1340,63 @@ Constants<Geometry::PYRAMID>::VertToVert::J[8][2] =
{4, 7} // 3,4:7
};
const int Geometry::
Constants<Geometry::PENTATOPE>::Edges[10][2] =
{{0, 1}, {0, 2}, {0, 3}, {0, 4}, {1, 2}, {1, 3}, {1, 4}, {2, 3}, {2, 4}, {3, 4}};
const int Geometry::
Constants<Geometry::PENTATOPE>::FaceTypes[5] =
{
Geometry::TETRAHEDRON, Geometry::TETRAHEDRON,
Geometry::TETRAHEDRON, Geometry::TETRAHEDRON,
Geometry::TETRAHEDRON
};
const int Geometry::
Constants<Geometry::PENTATOPE>::FaceVert[5][4] =
{
// {0, 1, 2, 3}, {0, 1, 2, 4},
// {0, 1, 3, 4}, {0, 2, 3, 4},
// {1, 2, 3, 4}
{0, 1, 2, 3}, {0, 2, 1, 4}, //<---- sorted such that the normal vectors are outer normal vectors
{0, 1, 3, 4}, {0, 3, 2, 4},
{1, 2, 3, 4}
};
const int Geometry::
Constants<Geometry::PENTATOPE>::PlanarVert[10][3] =
{
{0, 1, 2}, {0, 1, 3}, {0, 1, 4},
{0, 2, 3}, {0, 2, 4}, {0, 3, 4},
{1, 2, 3}, {1, 2, 4}, {1, 3, 4},
{2, 3, 4}
};
//const int Geometry::
//Constants<Geometry::PENTATOPE>::VertToVert::I[4] = {0, 3, 5, 6};
//const int Geometry::
//Constants<Geometry::PENTATOPE>::VertToVert::J[6][2] =
//{{1, 0}, {2, 1}, {3, 2}, {2, 3}, {3, 4}, {3, 5}};
const int Geometry::
Constants<Geometry::TESSERACT>::FaceVert[8][8] =
{
// {8,11,12,15,0,3,4,7}, //x bottom
// {1,2,6,5,9,10,14,13}, //x top
// {0,1,5,4,8,9,13,12}, //y bottom
// {2,3,7,6,10,11,15,14}, //y top
// {8,9,10,11,0,1,2,3}, // z bottom
// {4,5,6,7,12,13,14,15}, //z top
// {0,1,2,3,4,5,6,7}, //t botom
// {12,13,14,15,8,9,10,11} //t top
{8,11,15,12,0,3,7,4}, //x bottom
{1,2,6,5,9,10,14,13}, //x top
{0,1,5,4,8,9,13,12}, //y bottom
{2,3,7,6,10,11,15,14}, //y top
{8,9,10,11,0,1,2,3}, // z bottom
{4,5,6,7,12,13,14,15}, //z top
{0,1,2,3,4,5,6,7}, //t botom
{12,13,14,15,8,9,10,11} //t top
};
GeometryRefiner::~GeometryRefiner()
{
@@ -1656,7 +1957,9 @@ RefinedGeometry *GeometryRefiner::Refine(Geometry::Type Geom, int Times,
RGeom[Geometry::PRISM].Append(RG);
}
break;
case Geometry::PENTATOPE:
case Geometry::TESSERACT:
MFEM_ABORT("Reference element type is not supported!");
case Geometry::INVALID:
case Geometry::NUM_GEOMETRIES:
MFEM_ABORT("Unknown type of reference element!");
@@ -1768,6 +2071,8 @@ const IntegrationRule *GeometryRefiner::RefineInterior(Geometry::Type Geom,
case Geometry::CUBE:
case Geometry::PYRAMID:
case Geometry::PRISM:
case Geometry::PENTATOPE:
case Geometry::TESSERACT:
MFEM_ABORT("Reference element type is not supported!");
case Geometry::INVALID:
case Geometry::NUM_GEOMETRIES:
@@ -1837,6 +2142,24 @@ int GeometryRefiner::GetRefinementLevelFromPoints(Geometry::Type geom, int Npts)
}
case Geometry::PYRAMID:
MFEM_ABORT("Reference element type is not supported!");
case Geometry::PENTATOPE:
{
for (int n = 0, np = 0; (n < 15) && (np < Npts) ; n++)
{
np = (n+4)*(n+3)*(n+2)*(n+1)/24;
if (np == Npts) { return n; }
}
return -1;
}
case Geometry::TESSERACT:
{
for (int n = 0, np = 0; (n < 15) && (np < Npts) ; n++)
{
np = (n+1)*(n+1)*(n+1)*(n+1);
if (np == Npts) { return n; }
}
return -1;
}
case Geometry::INVALID:
case Geometry::NUM_GEOMETRIES:
MFEM_ABORT("Unknown type of reference element!");
@@ -1879,6 +2202,15 @@ int GeometryRefiner::GetRefinementLevelFromElems(Geometry::Type geom, int Nels)
}
case Geometry::PYRAMID:
MFEM_ABORT("Reference element type is not supported!");
case Geometry::PENTATOPE:
case Geometry::TESSERACT:
{
for (int n = 0; (n < 15) && (n*n*n*n < Nels+1) ; n++)
{
if (n*n*n*n == Nels) { return n-1; }
}
return -1;
}
case Geometry::INVALID:
case Geometry::NUM_GEOMETRIES:
MFEM_ABORT("Unknown type of reference element!");
+52 -2
View File
@@ -28,6 +28,8 @@ namespace mfem
Geometry::CUBE - the unit cube
Geometry::PRISM - w/ vert. (0,0,0),(1,0,0),(0,1,0),(0,0,1),(1,0,1),(0,1,1)
Geometry::PYRAMID - w/ vert. (0,0,0),(1,0,0),(1,1,0),(0,1,0),(0,0,1)
Geometry::PENTATOPE - w/ vert. (0,0,0,0),(1,0,0,0),(0,1,0,0),(0,0,1,0),(0,0,0,1)
Geometry::TESSERACT - the 4d unit cube
*/
class MFEM_EXPORT Geometry
{
@@ -35,12 +37,12 @@ public:
enum Type
{
INVALID = -1,
POINT = 0, SEGMENT, TRIANGLE, SQUARE, TETRAHEDRON, CUBE, PRISM, PYRAMID,
POINT = 0, SEGMENT, TRIANGLE, SQUARE, TETRAHEDRON, CUBE, PRISM, PYRAMID, PENTATOPE, TESSERACT,
NUM_GEOMETRIES
};
static const int NumGeom = NUM_GEOMETRIES;
static const int MaxDim = 3;
static const int MaxDim = 4;
static const int NumBdrArray[NumGeom];
static const char *Name[NumGeom];
static const real_t Volume[NumGeom];
@@ -118,6 +120,7 @@ public:
case 1: return SEGMENT;
case 2: return SQUARE;
case 3: return CUBE;
case 4: return TESSERACT;
default: MFEM_ABORT("Invalid dimension."); return INVALID;
}
}
@@ -305,6 +308,53 @@ template <> struct
};
};
template <> struct
/// @cond Suppress_Doxygen_warnings
MFEM_EXPORT
/// @endcond
Geometry::Constants<Geometry::PENTATOPE>
{
static const int Dimension = 4;
static const int NumVert = 5;
static const int NumEdges = 10;
static const int Edges[NumEdges][2];
static const int NumFaces = 5;
static const int FaceTypes[NumFaces];
static const int MaxFaceVert = 4;
static const int FaceVert[NumFaces][MaxFaceVert];
static const int NumPlanar = 10;
static const int MaxPlanarVert = 3;
static const int PlanarVert[NumPlanar][MaxPlanarVert];
// Lower-triangular part of the local vertex-to-vertex graph.
struct VertToVert
{
static const int I[NumVert];
static const int J[NumEdges][2]; // {end,edge_idx}
};
};
template <> struct
/// @cond Suppress_Doxygen_warnings
MFEM_EXPORT
/// @endcond
Geometry::Constants<Geometry::TESSERACT>
{
static const int Dimension = 4;
static const int NumVert = 16;
static const int NumEdges = 32;
static const int Edges[NumEdges][2];
static const int NumFaces = 8;
static const int FaceTypes[NumFaces];
static const int MaxFaceVert = 8;
static const int FaceVert[NumFaces][MaxFaceVert];
// Lower-triangular part of the local vertex-to-vertex graph.
struct VertToVert
{
static const int I[NumVert];
static const int J[NumEdges][2]; // {end,edge_idx}
};
};
// Defined in fe.cpp to ensure construction after 'mfem::TriangleFE' and
// `mfem::TetrahedronFE`.
extern MFEM_EXPORT Geometry Geometries;
+40 -2
View File
@@ -2123,8 +2123,15 @@ void GridFunction::AccumulateAndCountBdrValues(
Vector vals;
Mesh *mesh = fes->GetMesh();
NCMesh *ncmesh = mesh->ncmesh;
Array<int> bdr_edges, bdr_vertices, bdr_faces;
ncmesh->GetBoundaryClosure(attr, bdr_vertices, bdr_edges, bdr_faces);
Array<int> bdr_edges, bdr_vertices, bdr_faces, bdr_planars;
// if (mesh->Dimension() < 4)
// {
ncmesh->GetBoundaryClosure(attr, bdr_vertices, bdr_edges, bdr_faces);
// }
// else
// {
// ncmesh->GetBoundaryClosure(attr, bdr_vertices, bdr_edges, bdr_faces, bdr_planars);
// }
auto mark_dofs = [&](ElementTransformation &transf, const FiniteElement &fe)
{
@@ -2188,6 +2195,37 @@ void GridFunction::AccumulateAndCountBdrValues(
const FiniteElement *fe = fes->GetFaceElement(face);
mark_dofs(*transf, *fe);
}
for (int i = 0; i < bdr_planars.Size(); i++)
{
const FiniteElement *fe;
ElementTransformation *transf;
int planar = bdr_planars[i];
fes->GetPlanarVDofs(planar, vdofs);
if (vdofs.Size() == 0) { continue; }
transf = mesh->GetPlanarTransformation(planar);
transf->Attribute = -1; // FIXME: set the boundary attribute
fe = fes->GetPlanarElement(planar);
vals.SetSize(fe->GetDof());
for (int d = 0; d < vdim; d++)
{
if (!coeff[d]) { continue; }
fe->Project(*coeff[d], *transf, vals);
for (int k = 0; k < vals.Size(); k++)
{
int ind = vdofs[d*vals.Size()+k];
if (++values_counter[ind] == 1)
{
(*this)(ind) = vals(k);
}
else
{
(*this)(ind) += vals(k);
}
}
}
}
}
}
+194 -1
View File
@@ -151,10 +151,14 @@ void IntegrationRule::GrundmannMollerSimplexRule(int s, int n)
ip.weight = weight;
ip.x = real_t(2*beta[0] + 1)/(d + n - 2*i);
ip.y = real_t(2*beta[1] + 1)/(d + n - 2*i);
if (n == 3)
if (n >= 3)
{
ip.z = real_t(2*beta[2] + 1)/(d + n - 2*i);
}
if (n == 4)
{
ip.t = real_t(2*beta[3] + 1)/(d + n - 2*i);
}
int j = 0;
while (sums[j] == k)
@@ -994,6 +998,12 @@ IntegrationRules::IntegrationRules(int ref, int type)
CubeIntRules.SetSize(32, h_mt);
CubeIntRules = NULL;
PentatopeIntRules.SetSize(32, h_mt);
PentatopeIntRules = NULL;
TesseractIntRules.SetSize(32, h_mt);
TesseractIntRules = NULL;
#if defined(MFEM_THREAD_SAFE) && defined(MFEM_USE_OPENMP)
IntRuleLocks.SetSize(Geometry::NUM_GEOMETRIES, h_mt);
for (int i = 0; i < Geometry::NUM_GEOMETRIES; i++)
@@ -1017,6 +1027,8 @@ const IntegrationRule &IntegrationRules::Get(int GeomType, int Order)
case Geometry::CUBE: ir_array = &CubeIntRules; break;
case Geometry::PRISM: ir_array = &PrismIntRules; break;
case Geometry::PYRAMID: ir_array = &PyramidIntRules; break;
case Geometry::PENTATOPE: ir_array = &PentatopeIntRules; break;
case Geometry::TESSERACT: ir_array = &TesseractIntRules; break;
case Geometry::INVALID:
case Geometry::NUM_GEOMETRIES:
MFEM_ABORT("Unknown type of reference element!");
@@ -1067,6 +1079,8 @@ void IntegrationRules::Set(int GeomType, int Order, IntegrationRule &IntRule)
case Geometry::CUBE: ir_array = &CubeIntRules; break;
case Geometry::PRISM: ir_array = &PrismIntRules; break;
case Geometry::PYRAMID: ir_array = &PyramidIntRules; break;
case Geometry::PENTATOPE: ir_array = &PentatopeIntRules; break;
case Geometry::TESSERACT: ir_array = &TesseractIntRules; break;
case Geometry::INVALID:
case Geometry::NUM_GEOMETRIES:
MFEM_ABORT("Unknown type of reference element!");
@@ -1125,6 +1139,8 @@ IntegrationRules::~IntegrationRules()
DeleteIntRuleArray(CubeIntRules);
DeleteIntRuleArray(PrismIntRules);
DeleteIntRuleArray(PyramidIntRules);
DeleteIntRuleArray(PentatopeIntRules);
DeleteIntRuleArray(TesseractIntRules);
}
@@ -1149,6 +1165,10 @@ IntegrationRule *IntegrationRules::GenerateIntegrationRule(int GeomType,
return PrismIntegrationRule(Order);
case Geometry::PYRAMID:
return PyramidIntegrationRule(Order);
case Geometry::PENTATOPE:
return PentatopeIntegrationRule(Order);
case Geometry::TESSERACT:
return TesseractIntegrationRule(Order);
case Geometry::INVALID:
case Geometry::NUM_GEOMETRIES:
MFEM_ABORT("Unknown type of reference element!");
@@ -1862,6 +1882,179 @@ IntegrationRule *IntegrationRules::CubeIntegrationRule(int Order)
return CubeIntRules[Order];
}
IntegrationRule *IntegrationRules::PentatopeIntegrationRule(int Order)
{
IntegrationRule *ir;
#ifdef MFEM_DEBUG_INTRULES
mfem::out << "requesting integration rules for pentatopes ( order = " << Order << " )!" << endl;
#endif
switch (Order)
{
case 0: // 1 point - degree 1
case 1:
PentatopeIntRules[0] = PentatopeIntRules[1] = ir = new IntegrationRule(1);
ir->AddPentMidPoint(0, 1./24.);
ir->SetOrder(1);
return ir;
case 2: // 5 points - degree 2 -- taken from https://doi.org/10.1016/j.camwa.2020.07.004
PentatopeIntRules[2] = ir = new IntegrationRule(5);
ir->AddPentPoints5(0, 0.11835034190722738822731940899757, 1/120.);
ir->SetOrder(2);
return ir;
case 3: // 15 points - degree 3 -- taken from https://doi.org/10.1016/j.camwa.2020.07.004
PentatopeIntRules[3] = ir = new IntegrationRule(15);
ir->AddPentPoints5(0, 0.05666638104005152637432374262971, 0.01971744594977651449108080328187 / 24.);
ir->AddPentPoints10(5, 0.08282378463560803594223358459203, 0.5 - 1.5 * 0.08282378463560803594223358459203, 0.09014127702511173789723386562400 / 24.);
ir->SetOrder(3);
return ir;
case 4: // 35 points - degree 5 -- taken from https://doi.org/10.1016/j.camwa.2020.07.004
case 5:
PentatopeIntRules[4] = PentatopeIntRules[5] = ir = new IntegrationRule(35);
ir->AddPentPoints5(0, 0.08639272923225102540634168235556, 0.05144687284129603743743075483508 / 24.);
ir->AddPentPoints10(5, 0.02401496720062019571417799568280, 0.5 - 1.5 * 0.02401496720062019571417799568280, 0.01075810672318828174753857496171 / 24.);
ir->AddPentPoints20(15, 0.29381800402893687440553094347706, 0.06247517556258090631882140542075, 0.03175922842808185514451579933848 / 24.);
ir->SetOrder(5);
return ir;
case 6: // 70 points - degree 6 -- taken from https://doi.org/10.1016/j.camwa.2020.07.004
PentatopeIntRules[6] = ir = new IntegrationRule(70);
ir->AddPentPoints5(0, 0.154743213149364, 0.027287104452858 / 24.);
ir->AddPentPoints5(5, 0.243583446244066, 0.030022493650412 / 24.);
ir->AddPentPoints10(10, 0.045742589279674, 0.5 - 1.5 * 0.045742589279674, 0.010857537843152 / 24.);
ir->AddPentPoints20(20, 0.034061388191316, 0.153237752298796, 0.004213752156913 / 24.);
ir->AddPentPoints30(40, 0.042203997139861, 0.211681755872075, 0.017353386263795 / 24.);
ir->SetOrder(6);
return ir;
case 7: // 126 points - degree 8 -- taken from https://doi.org/10.1016/j.camwa.2020.07.004
case 8:
PentatopeIntRules[7] = PentatopeIntRules[8] = ir = new IntegrationRule(126);
ir->AddPentMidPoint(0, 0.018477072894310 / 24.);
ir->AddPentPoints5(1, 0.041850193209872, 0.003356028785577 / 24.);
ir->AddPentPoints20(6, 0.013234490721597, 0.279965061732618, 0.001166950584118 / 24.);
ir->AddPentPoints20(26, 0.183538643543872, 0.051063845643639, 0.019804745119265 / 24.);
ir->AddPentPoints20(46, 0.311385773831175, 0.014631015332223, 0.005373375682319 / 24.);
ir->AddPentPoints30(66, 0.032042227982220, 0.160928155464441, 0.007544402046650 / 24.);
ir->AddPentPoints30(96, 0.088725307776945, 0.403464343042675, 0.007050309802142 / 24.);
ir->SetOrder(8);
return ir;
case -1:
{
//construct the higher integration rules with the duffy transformation --> 1d integral in time and a tet quad-rule w.r.t space
IntegrationRule *timeIR = SegmentIntegrationRule(Order + 2);
IntegrationRule *tetIR = TetrahedronIntegrationRule(Order);
int NIP = timeIR->GetNPoints() * tetIR->GetNPoints();
AllocIntRule(PentatopeIntRules, Order);
PentatopeIntRules[Order] = ir = new IntegrationRule(NIP);
#ifdef MFEM_DEBUG
mfem::out << "higher integration rules for pentatopes implemented with duffy ( order = " << Order << " ) --> " << NIP << " int. points!" << endl;
#endif
double xi,yi,zi,ti, weight;
int pos = 0;
for (int i=0; i<timeIR->GetNPoints(); i++)
{
ti = timeIR->IntPoint(i).x;
for (int j=0; j<tetIR->GetNPoints(); j++)
{
xi = (1. - ti) * tetIR->IntPoint(j).x;
yi = (1. - ti) * tetIR->IntPoint(j).y;
zi = (1. - ti) * tetIR->IntPoint(j).z;
weight = timeIR->IntPoint(i).weight * tetIR->IntPoint(j).weight * (1.-ti) *
(1.-ti) * (1.-ti);
#ifdef MFEM_DEBUG
if(weight<0) mfem::out << "warning weight is negative!" << endl;
#endif
ir->AddPentPoint(pos, xi,yi,zi,ti,weight);
pos++;
}
}
#ifdef MFEM_DEBUG_INTRULES
char str[256];
mfem::out << "The points and weights are:" << endl;
for (int k = 0; k < ir->Size(); ++k)
{
const IntegrationPoint &ip = ir->IntPoint(k);
sprintf(str, "{%.16f, {%.16f, %.16f, %.16f, %.16f}},", ip.weight, ip.x, ip.y, ip.z, ip.t);
mfem::out << str << endl;
}
#endif
// 2025 November: Don't we need "return ir;"? It was not there
return ir;
break;
}
default:
{
int i = (Order / 2) * 2 + 1; // Get closest odd # >= Order
AllocIntRule(PentatopeIntRules, i);
ir = new IntegrationRule;
ir->GrundmannMollerSimplexRule(i/2,4);
PentatopeIntRules[i-1] = PentatopeIntRules[i] = ir;
return ir;
}
}
return PentatopeIntRules[Order];
}
IntegrationRule *IntegrationRules::TesseractIntegrationRule(int Order)
{
int k, l, m, n, np, index;
int i = (Order / 2) * 2 + 1; // Get closest odd # >= Order
if (!HaveIntRule(SegmentIntRules, i))
{
SegmentIntegrationRule(i);
}
AllocIntRule(TesseractIntRules, i);
np = SegmentIntRules[i] -> GetNPoints();
TesseractIntRules[i-1] = TesseractIntRules[i] = new IntegrationRule(
np*np*np*np);
index = 0;
for (k = 0; k < np; k++)
for (l = 0; l < np; l++)
for (m = 0; m < np; m++)
for (n = 0; n < np; n++)
{
// index = ((k*np+l)*np+m)*np + n;
TesseractIntRules[i] -> IntPoint(index).x =
SegmentIntRules[i] -> IntPoint(n).x;
TesseractIntRules[i] -> IntPoint(index).y =
SegmentIntRules[i] -> IntPoint(m).x;
TesseractIntRules[i] -> IntPoint(index).z =
SegmentIntRules[i] -> IntPoint(l).x;
TesseractIntRules[i] -> IntPoint(index).t =
SegmentIntRules[i] -> IntPoint(k).x;
TesseractIntRules[i] -> IntPoint(index).weight =
SegmentIntRules[i] -> IntPoint(k).weight *
SegmentIntRules[i] -> IntPoint(l).weight *
SegmentIntRules[i] -> IntPoint(m).weight *
SegmentIntRules[i] -> IntPoint(n).weight;
index++;
}
TesseractIntRules[i]->SetOrder(i);
return TesseractIntRules[i];
}
IntegrationRule& NURBSMeshRules::GetElementRule(const int elem,
const int patch, const int *ijk,
Array<const KnotVector*> const& kv,
+124 -4
View File
@@ -34,18 +34,18 @@ class Mesh;
class IntegrationPoint
{
public:
real_t x, y, z, weight;
real_t x, y, z, t, weight;
int index;
void Init(int const i)
{
x = y = z = weight = 0.0;
x = y = z = t = weight = 0.0;
index = i;
}
void Set(const real_t *p, const int dim)
{
MFEM_ASSERT(1 <= dim && dim <= 3, "invalid dim: " << dim);
MFEM_ASSERT(1 <= dim && dim <= 4, "invalid dim: " << dim);
x = p[0];
if (dim > 1)
{
@@ -53,13 +53,17 @@ public:
if (dim > 2)
{
z = p[2];
if (dim > 3)
{
t = p[3];
}
}
}
}
void Get(real_t *p, const int dim) const
{
MFEM_ASSERT(1 <= dim && dim <= 3, "invalid dim: " << dim);
MFEM_ASSERT(1 <= dim && dim <= 4, "invalid dim: " << dim);
p[0] = x;
if (dim > 1)
{
@@ -67,6 +71,10 @@ public:
if (dim > 2)
{
p[2] = z;
if (dim > 3)
{
p[3] = t;
}
}
}
}
@@ -74,6 +82,17 @@ public:
void Set(const real_t x1, const real_t x2, const real_t x3, const real_t w)
{ x = x1; y = x2; z = x3; weight = w; }
void Set4w(const real_t *p) { x = p[0]; y = p[1]; z = p[2]; t = p[3]; weight = p[4]; }
void Set4w(const real_t x1, const real_t x2, const real_t x3, const real_t x4,
const real_t w)
{ x = x1; y = x2; z = x3; t = x4; weight = w; }
void Set4(const real_t *p) { x = p[0]; y = p[1]; z = p[2]; t = p[3]; }
void Set4(const real_t x1, const real_t x2, const real_t x3, const real_t x4)
{ x = x1; y = x2; z = x3; t = x4; }
void Set3w(const real_t *p) { x = p[0]; y = p[1]; z = p[2]; weight = p[3]; }
void Set3(const real_t x1, const real_t x2, const real_t x3)
@@ -219,6 +238,103 @@ private:
AddTetPoints6(off + 6, a, b, c, weight);
}
void AddPentMidPoint(const int off, const double weight)
{ IntPoint(off).Set4w(0.2, 0.2, 0.2, 0.2, weight); }
void AddPentPoint(const int off, const double x, const double y, const double z,
const double t, double weight)
{
IntPoint(off).Set4w(x, y, z, t, weight);
}
// given (a), add the permuations of (a,a,a,a,b), b = 1 - 4*a
void AddPentPoints5(const int off, const double a,
double weight)
{
const double b = 1. - 4 * a;
IntPoint(off + 0).Set4w(a, a, a, a, weight);
IntPoint(off + 1).Set4w(b, a, a, a, weight);
IntPoint(off + 2).Set4w(a, b, a, a, weight);
IntPoint(off + 3).Set4w(a, a, b, a, weight);
IntPoint(off + 4).Set4w(a, a, a, b, weight);
}
// given (a,b), add the permuations of (a,a,a,b,b)
void AddPentPoints10(const int off, const double a, const double b, double weight)
{
IntPoint(off + 0).Set4w(a, a, a, b, weight);
IntPoint(off + 1).Set4w(a, a, b, a, weight);
IntPoint(off + 2).Set4w(a, a, b, b, weight);
IntPoint(off + 3).Set4w(a, b, a, a, weight);
IntPoint(off + 4).Set4w(a, b, a, b, weight);
IntPoint(off + 5).Set4w(a, b, b, a, weight);
IntPoint(off + 6).Set4w(b, a, a, a, weight);
IntPoint(off + 7).Set4w(b, a, a, b, weight);
IntPoint(off + 8).Set4w(b, a, b, a, weight);
IntPoint(off + 9).Set4w(b, b, a, a, weight);
}
// given (a,b,c), add the permuations of (a,a,a,b,c), c = 1 - 3 a - b
void AddPentPoints20(const int off, const double a, const double b, double weight)
{
const double c = 1. - 3. * a - b;
IntPoint(off + 0).Set4w(a, a, a, b, weight);
IntPoint(off + 1).Set4w(a, a, a, c, weight);
IntPoint(off + 2).Set4w(a, a, b, a, weight);
IntPoint(off + 3).Set4w(a, a, b, c, weight);
IntPoint(off + 4).Set4w(a, a, c, a, weight);
IntPoint(off + 5).Set4w(a, a, c, b, weight);
IntPoint(off + 6).Set4w(a, b, a, a, weight);
IntPoint(off + 7).Set4w(a, b, a, c, weight);
IntPoint(off + 8).Set4w(a, b, c, a, weight);
IntPoint(off + 9).Set4w(a, c, a, a, weight);
IntPoint(off + 10).Set4w(a, c, a, b, weight);
IntPoint(off + 11).Set4w(a, c, b, a, weight);
IntPoint(off + 12).Set4w(b, a, a, a, weight);
IntPoint(off + 13).Set4w(b, a, a, c, weight);
IntPoint(off + 14).Set4w(b, a, c, a, weight);
IntPoint(off + 15).Set4w(b, c, a, a, weight);
IntPoint(off + 16).Set4w(c, a, a, a, weight);
IntPoint(off + 17).Set4w(c, a, a, b, weight);
IntPoint(off + 18).Set4w(c, a, b, a, weight);
IntPoint(off + 19).Set4w(c, b, a, a, weight);
}
// given (a,b,c), add the permutations of (a,a,b,b,c), c = 1 - 2 a - 2 b
void AddPentPoints30(const int off, const double a, const double b, double weight)
{
double c = 1. - 2. * a - 2. * b;
IntPoint(off + 0).Set4w(a, a, b, b, weight);
IntPoint(off + 1).Set4w(a, a, b, c, weight);
IntPoint(off + 2).Set4w(a, a, c, b, weight);
IntPoint(off + 3).Set4w(a, b, a, b, weight);
IntPoint(off + 4).Set4w(a, b, a, c, weight);
IntPoint(off + 5).Set4w(a, b, b, a, weight);
IntPoint(off + 6).Set4w(a, b, b, c, weight);
IntPoint(off + 7).Set4w(a, b, c, a, weight);
IntPoint(off + 8).Set4w(a, b, c, b, weight);
IntPoint(off + 9).Set4w(a, c, a, b, weight);
IntPoint(off + 10).Set4w(a, c, b, a, weight);
IntPoint(off + 11).Set4w(a, c, b, b, weight);
IntPoint(off + 12).Set4w(b, a, a, b, weight);
IntPoint(off + 13).Set4w(b, a, a, c, weight);
IntPoint(off + 14).Set4w(b, a, b, a, weight);
IntPoint(off + 15).Set4w(b, a, b, c, weight);
IntPoint(off + 16).Set4w(b, a, c, a, weight);
IntPoint(off + 17).Set4w(b, a, c, b, weight);
IntPoint(off + 18).Set4w(b, b, a, a, weight);
IntPoint(off + 19).Set4w(b, b, a, c, weight);
IntPoint(off + 20).Set4w(b, b, c, a, weight);
IntPoint(off + 21).Set4w(b, c, a, a, weight);
IntPoint(off + 22).Set4w(b, c, a, b, weight);
IntPoint(off + 23).Set4w(b, c, b, a, weight);
IntPoint(off + 24).Set4w(c, a, a, b, weight);
IntPoint(off + 25).Set4w(c, a, b, a, weight);
IntPoint(off + 26).Set4w(c, a, b, b, weight);
IntPoint(off + 27).Set4w(c, b, a, a, weight);
IntPoint(off + 28).Set4w(c, b, a, b, weight);
IntPoint(off + 29).Set4w(c, b, b, a, weight);
}
public:
IntegrationRule() :
Array<IntegrationPoint>() { }
@@ -430,6 +546,8 @@ private:
Array<IntegrationRule *> PyramidIntRules;
Array<IntegrationRule *> PrismIntRules;
Array<IntegrationRule *> CubeIntRules;
Array<IntegrationRule *> PentatopeIntRules;
Array<IntegrationRule *> TesseractIntRules;
#if defined(MFEM_THREAD_SAFE) && defined(MFEM_USE_OPENMP)
Array<omp_lock_t> IntRuleLocks;
@@ -464,6 +582,8 @@ private:
IntegrationRule *PyramidIntegrationRule(int Order);
IntegrationRule *PrismIntegrationRule(int Order);
IntegrationRule *CubeIntegrationRule(int Order);
IntegrationRule *PentatopeIntegrationRule(int Order);
IntegrationRule *TesseractIntegrationRule(int Order);
public:
/// Sets initial sizes for the integration rule arrays, but rules
+6
View File
@@ -249,6 +249,12 @@ public:
FiniteElementSpace #fes. */
LinearForm &operator=(const Vector &v);
/// Change ownership of linear form integrators.
void SetIntegratorOwnership(int _extern_lfs)
{
extern_lfs = _extern_lfs;
}
/// Destroys linear form.
~LinearForm();
};
+51 -1
View File
@@ -174,7 +174,6 @@ public:
using LinearFormIntegrator::AssembleRHSElementVect;
};
/// Class for boundary integration $ L(v) := (g, v) $
class BoundaryLFIntegrator : public LinearFormIntegrator
{
@@ -782,6 +781,57 @@ public:
}
};
class MatFEDomainLFIntegrator : public LinearFormIntegrator
{
private:
MatrixCoefficient &QF;
DenseMatrix vshape;
DenseMatrix mat;
Vector matToVec;
public:
MatFEDomainLFIntegrator (MatrixCoefficient &F) : QF(F) { }
virtual void AssembleRHSElementVect(const FiniteElement &el,
ElementTransformation &Tr,
Vector &elvect)
{
int dof = el.GetDof();
int dim = el.GetDim();
vshape.SetSize(dof,dim*dim);
mat.SetSize(dim,dim);
matToVec.SetSize(dim*dim);
elvect.SetSize(dof);
elvect = 0.0;
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
// int intorder = 2*el.GetOrder() - 1; // ok for O(h^{k+1}) conv. in L2
int intorder = 2*el.GetOrder() + 2;
ir = &IntRules.Get(el.GetGeomType(), intorder);
}
for (int i = 0; i < ir->GetNPoints(); i++)
{
const IntegrationPoint &ip = ir->IntPoint(i);
Tr.SetIntPoint (&ip);
el.CalcVShape(Tr, vshape);
QF.Eval (mat, Tr, ip);
mat *= ip.weight * fabs(Tr.Weight());
for (int ki=0; ki<dim; ki++) for (int kj=0; kj<dim; kj++) { matToVec(dim*ki+kj) = mat(ki,kj); }
vshape.AddMult(matToVec, elvect);
}
}
using LinearFormIntegrator::AssembleRHSElementVect;
};
}
+12
View File
@@ -330,6 +330,18 @@ public:
/// Compute y += a (P^t A P) x, where x and y are vectors on the true dofs
void TrueAddMult(const Vector &x, Vector &y, const real_t a = 1.0) const;
using MixedBilinearForm::Update;
virtual void Update(ParFiniteElementSpace *ntr_fes = NULL,
ParFiniteElementSpace *nte_fes = NULL)
{
MixedBilinearForm::Update(ntr_fes, nte_fes);
if (ntr_fes && nte_fes )
{
trial_pfes = ntr_fes;
test_pfes = nte_fes;
}
}
virtual ~ParMixedBilinearForm() { }
};
+269 -6
View File
@@ -174,10 +174,11 @@ void ParFiniteElementSpace::Construct()
ngfdofs = pncmesh->GetNGhostFaces()
* fec->DofForGeometry(Geometry::Type::SQUARE);
}
ngpdofs = 0;
// total number of ghost DOFs. Ghost DOFs start at index 'ndofs', i.e.,
// after all regular DOFs
ngdofs = ngvdofs + ngedofs + ngfdofs;
ngdofs = ngvdofs + ngedofs + ngfdofs + ngpdofs;
// get P and R matrices, initialize DOF offsets, etc. NOTE: in the NC
// case this needs to be done here to get the number of true DOFs
@@ -235,8 +236,11 @@ void ParFiniteElementSpace::GetGroupComm(
int gr;
int ng = pmesh->GetNGroups();
int nvd, ned, ntd = 0, nqd = 0;
int nted = 0;
Array<int> dofs;
int dim = pmesh->Dimension();
int group_ldof_counter;
Table &group_ldof = gc.GroupLDofTable();
@@ -253,6 +257,10 @@ void ParFiniteElementSpace::GetGroupComm(
{
nqd = fec->DofForGeometry(Geometry::SQUARE);
}
if (mesh->HasGeometry(Geometry::TETRAHEDRON) && dim > 3)
{
nted = fec->DofForGeometry(Geometry::TETRAHEDRON);
}
}
if (g_ldof_sign)
@@ -269,6 +277,11 @@ void ParFiniteElementSpace::GetGroupComm(
group_ldof_counter += ned * pmesh->GroupNEdges(gr);
group_ldof_counter += ntd * pmesh->GroupNTriangles(gr);
group_ldof_counter += nqd * pmesh->GroupNQuadrilaterals(gr);
if (dim > 3)
{
group_ldof_counter += nted * pmesh->GroupNTetrahedra(
gr); // FIXME: ensure that tet-group is always build
}
}
if (ldof_type)
{
@@ -282,13 +295,14 @@ void ParFiniteElementSpace::GetGroupComm(
group_ldof.GetI()[0] = group_ldof.GetI()[1] = 0;
for (gr = 1; gr < ng; gr++)
{
int j, k, l, m, o, nv, ne, nt, nq;
int j, k, l, m, o, nv, ne, nt, nq, nte;
const int *ind;
nv = pmesh->GroupNVertices(gr);
ne = pmesh->GroupNEdges(gr);
nt = pmesh->GroupNTriangles(gr);
nq = pmesh->GroupNQuadrilaterals(gr);
nte = (dim>3) ? pmesh->GroupNTetrahedra(gr) : 0; // FIXME
// vertices
if (nvd > 0)
@@ -362,7 +376,14 @@ void ParFiniteElementSpace::GetGroupComm(
pmesh->GroupTriangle(gr, j, k, o);
dofs.SetSize(ntd);
m = nvdofs + nedofs + FirstFaceDof(k);
if (dim == 4)
{
m = nvdofs+nedofs+pdofs[k];
}
else
{
m = nvdofs + nedofs + FirstFaceDof(k);
}
ind = fec->DofOrderForOrientation(Geometry::TRIANGLE, o);
for (l = 0; l < ntd; l++)
{
@@ -430,6 +451,45 @@ void ParFiniteElementSpace::GetGroupComm(
}
}
// tetrahedra (4D)
if (nted > 0)
{
for (j = 0; j < nte; j++)
{
pmesh->GroupTetrahedron(gr, j, k, o);
dofs.SetSize(nted);
m = nvdofs+nedofs+npdofs+ FirstFaceDof(k);
ind = fec->DofOrderForOrientation(
mesh->GetFaceGeometry(k), o);
for (l = 0; l < nted; l++)
{
if (ind[l] < 0)
{
dofs[l] = m + (-1-ind[l]);
if (g_ldof_sign)
{
(*g_ldof_sign)[dofs[l]] = -1;
}
}
else
{
dofs[l] = m + ind[l];
}
}
if (ldof_type)
{
DofsToVDofs(dofs);
}
for (l = 0; l < dofs.Size(); l++)
{
group_ldof.GetJ()[group_ldof_counter++] = dofs[l];
}
}
}
group_ldof.GetI()[gr+1] = group_ldof_counter;
}
@@ -651,6 +711,30 @@ void ParFiniteElementSpace::GetSharedQuadrilateralDofs(
}
}
void ParFiniteElementSpace::GetSharedTetrahedronDofs(
int group, int fi, Array<int> &dofs) const
{
int l_face, ori;
MFEM_ASSERT(0 <= fi &&
fi < pmesh->GroupNTetrahedra(group), "invalid face index");
pmesh->GroupTetrahedron(group, fi, l_face, ori);
if (ori == 0)
{
GetFaceDofs(l_face, dofs);
}
else
{
Array<int> rdofs;
fec->SubDofOrder(pmesh->GetFaceGeometry(l_face), 2, ori, dofs);
GetFaceDofs(l_face, rdofs);
for (int i = 0; i < dofs.Size(); i++)
{
const int di = dofs[i];
dofs[i] = (di >= 0) ? rdofs[di] : -1-rdofs[-1-di];
}
}
}
void ParFiniteElementSpace::GenerateGlobalOffsets() const
{
MFEM_ASSERT(Conforming(), "wrong code path");
@@ -1738,6 +1822,115 @@ void ParFiniteElementSpace::GetGhostFaceDofs(const MeshId &face_id,
}
}
void ParFiniteElementSpace::GetGhostFaceDofs4D(const MeshId &face_id,
Array<int> &dofs) const
{
#if 0
MFEM_ASSERT(mesh->GetFaceBaseGeometry(0) == Geometry::TETRAHEDRON, "");
int nv = fec->DofForGeometry(Geometry::POINT);
int ne = fec->DofForGeometry(Geometry::SEGMENT);
int np = fec->DofForGeometry(Geometry::TRIANGLE);
int nf = fec->DofForGeometry(Geometry::TETRAHEDRON);
dofs.SetSize(4*nv + 6*ne + 4*np + nf);
int V[4], E[6], Eo[6], P[4], Po[4];
pmesh->pncmesh->GetFaceVerticesEdgesPlanars(face_id, V, E, Eo, P, Po);
int offset = 0;
for (int i = 0; i < 4; i++)
{
int ghost = pncmesh->GetNVertices();
int first = (V[i] < ghost) ? V[i]*nv : (ndofs + (V[i] - ghost)*nv);
for (int j = 0; j < nv; j++)
{
dofs[offset++] = first + j;
}
}
for (int i = 0; i < 6; i++)
{
int ghost = pncmesh->GetNEdges();
int first = (E[i] < ghost) ? nvdofs + E[i]*ne
/* */ : ndofs + ngvdofs + (E[i] - ghost)*ne;
const int *ind = fec->DofOrderForOrientation(Geometry::SEGMENT, Eo[i]);
for (int j = 0; j < ne; j++)
{
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j])
/* */ : (-1 - (first + (-1 - ind[j])));
}
}
for (int i = 0; i < 4; i++)
{
// TODO higher order
int ghost = pncmesh->GetNPlanars();
int first = (P[i] < ghost) ? nvdofs + nedofs + P[i]*np
/* */ : ndofs + ngvdofs + nedofs + ngedofs + (P[i] - ghost)*np;
// const int *ind = fec->DofOrderForOrientation(Geometry::SEGMENT, Eo[i]);
for (int j = 0; j < np; j++)
{
dofs[offset++] = first + j;
}
}
int first = ndofs + ngvdofs + ngedofs +
(face_id.index - pncmesh->GetNFaces())*nf;
for (int j = 0; j < nf; j++)
{
dofs[offset++] = first + j;
}
#endif
}
void ParFiniteElementSpace::GetGhostPlanarDofs(const MeshId &planar_id,
Array<int> &dofs) const
{
#if 0
MFEM_ASSERT(mesh->GetPlanarBaseGeometry(0) == Geometry::TRIANGLE, "");
int nv = fec->DofForGeometry(Geometry::POINT);
int ne = fec->DofForGeometry(Geometry::SEGMENT);
int np = fec->DofForGeometry(Geometry::TRIANGLE);
dofs.SetSize(3*nv + 3*ne + np);
int V[3], E[3], Eo[3];
pmesh->pncmesh->GetPlanarVerticesEdges(planar_id, V, E, Eo);
int offset = 0;
for (int i = 0; i < 3; i++)
{
int ghost = pncmesh->GetNVertices();
int first = (V[i] < ghost) ? V[i]*nv : (ndofs + (V[i] - ghost)*nv);
for (int j = 0; j < nv; j++)
{
dofs[offset++] = first + j;
}
}
for (int i = 0; i < 3; i++)
{
int ghost = pncmesh->GetNEdges();
int first = (E[i] < ghost) ? nvdofs + E[i]*ne
/* */ : ndofs + ngvdofs + (E[i] - ghost)*ne;
const int *ind = fec->DofOrderForOrientation(Geometry::SEGMENT, Eo[i]);
for (int j = 0; j < ne; j++)
{
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j])
/* */ : (-1 - (first + (-1 - ind[j])));
}
}
int first = ndofs + ngvdofs + ngedofs +
(planar_id.index - pncmesh->GetNPlanars())*np;
for (int j = 0; j < np; j++)
{
dofs[offset++] = first + j;
}
#endif
}
void ParFiniteElementSpace::GetGhostDofs(int entity, const MeshId &id,
Array<int> &dofs) const
{
@@ -1750,6 +1943,19 @@ void ParFiniteElementSpace::GetGhostDofs(int entity, const MeshId &id,
}
}
void ParFiniteElementSpace::GetGhostDofs4D(int entity, const MeshId &id,
Array<int> &dofs) const
{
// helper to get ghost vertex, ghost edge or ghost face DOFs
switch (entity)
{
case 0: GetGhostVertexDofs(id, dofs); break;
case 1: GetGhostEdgeDofs(id, dofs); break;
case 2: GetGhostPlanarDofs(id, dofs); break;
case 3: GetGhostFaceDofs4D(id, dofs); break;
}
}
void ParFiniteElementSpace::GetBareDofs(int entity, int index,
Array<int> &dofs) const
{
@@ -1800,6 +2006,55 @@ void ParFiniteElementSpace::GetBareDofs(int entity, int index,
}
}
void ParFiniteElementSpace::GetBareDofs4D(int entity, int index,
Array<int> &dofs) const
{
#if 0
int ned, ghost, first;
switch (entity)
{
case 0:
ned = fec->DofForGeometry(Geometry::POINT);
ghost = pncmesh->GetNVertices();
first = (index < ghost)
? index*ned // regular vertex
: ndofs + (index - ghost)*ned; // ghost vertex
break;
case 1:
ned = fec->DofForGeometry(Geometry::SEGMENT);
ghost = pncmesh->GetNEdges();
first = (index < ghost)
? nvdofs + index*ned // regular edge
: ndofs + ngvdofs + (index - ghost)*ned; // ghost edge
break;
case 2:
ned = fec->DofForGeometry(mesh->GetPlanarBaseGeometry(0));
ghost = pncmesh->GetNPlanars();
first = (index < ghost)
? nvdofs + nedofs + index*ned
: ndofs + ngvdofs + ngedofs + (index - ghost)*ned;
break;
default:
ned = fec->DofForGeometry(mesh->GetFaceBaseGeometry(0));
ghost = pncmesh->GetNFaces();
first = (index < ghost)
? nvdofs + nedofs + npdofs + index*ned // regular face
: ndofs + ngvdofs + ngedofs + ngpdofs + (index - ghost)*ned; // ghost
break;
}
dofs.SetSize(ned);
for (int i = 0; i < ned; i++)
{
dofs[i] = first + i;
}
#endif
}
int ParFiniteElementSpace::PackDof(int entity, int index, int edof) const
{
// DOFs are ordered as follows:
@@ -2406,7 +2661,7 @@ int ParFiniteElementSpace
Array<int> *dof_tdof,
bool partial) const
{
const bool dg = (nvdofs == 0 && nedofs == 0 && nfdofs == 0);
const bool dg = (nvdofs == 0 && nedofs == 0 && nfdofs == 0 && npdofs == 0);
#ifdef MFEM_PMATRIX_STATS
n_msgs_sent = n_msgs_recv = 0;
@@ -2469,7 +2724,7 @@ int ParFiniteElementSpace
list.OrientedPointMatrix(sf, T.GetPointMat());
fe->GetLocalInterpolation(T, I);
// mfem::out << "**************\n";
// make each slave DOF dependent on all master DOFs
AddDependencies(deps, master_dofs, slave_dofs, I);
}
@@ -2497,7 +2752,14 @@ int ParFiniteElementSpace
GroupId owner = pncmesh->GetEntityOwnerId(entity, id.index);
GroupId group = pncmesh->GetEntityGroupId(entity, id.index);
GetBareDofs(entity, id.index, dofs);
if (pmesh->Dimension() <= 3)
{
GetBareDofs(entity, id.index, dofs);
}
else
{
GetBareDofs4D(entity, id.index, dofs);
}
for (auto dof : dofs)
{
@@ -2506,6 +2768,7 @@ int ParFiniteElementSpace
}
};
// initialize dof_group[], dof_owner[] in sequence
for (int entity : {0,1,2})
{
+7 -1
View File
@@ -45,7 +45,7 @@ private:
mutable int ltdof_size;
/// Number of vertex/edge/face/total ghost DOFs (nonconforming case).
int ngvdofs, ngedofs, ngfdofs, ngdofs;
int ngvdofs, ngedofs, ngfdofs, ngdofs, ngpdofs;
/// The group of each local dof.
Array<int> ldof_group;
@@ -126,8 +126,13 @@ private:
void GetGhostFaceDofs(const MeshId &face_id, Array<int> &dofs) const;
void GetGhostDofs(int entity, const MeshId &id, Array<int> &dofs) const;
void GetGhostFaceDofs4D(const MeshId &face_id, Array<int> &dofs) const;
void GetGhostPlanarDofs(const MeshId &planar_id, Array<int> &dofs) const;
void GetGhostDofs4D(int entity, const MeshId &id, Array<int> &dofs) const;
/// Return the dofs associated with the interior of the given mesh entity.
void GetBareDofs(int entity, int index, Array<int> &dofs) const;
void GetBareDofs4D(int entity, int index, Array<int> &dofs) const;
int PackDof(int entity, int index, int edof) const;
void UnpackDof(int dof, int &entity, int &index, int &edof) const;
@@ -322,6 +327,7 @@ public:
void GetSharedEdgeDofs(int group, int ei, Array<int> &dofs) const;
void GetSharedTriangleDofs(int group, int fi, Array<int> &dofs) const;
void GetSharedQuadrilateralDofs(int group, int fi, Array<int> &dofs) const;
void GetSharedTetrahedronDofs(int group, int fi, Array<int> &dofs) const;
/// The true dof-to-dof interpolation matrix
HypreParMatrix *Dof_TrueDof_Matrix() const
+125
View File
@@ -39,12 +39,22 @@ struct Hashed4
int next;
};
/** A concept for items that should be used in HashTable and be accessible by
* hashing 5 IDs. temporary workaround for 4D (need a structure where all 4 ids a stored)
*/
struct Hashed5
{
int p1, p2, p3, p4; // NOTE: p5 is not hashed nor stored
int next;
};
/** HashTable is a container for items that require associative access through
* pairs (or quadruples) of indices:
*
* (p1, p2) -> item
* (p1, p2, p3, p4) -> item
* (p1, p2, p3, p4, p5) -> item
*
* An example of this are edges and faces in a mesh. Each edge is uniquely
* identified by two parent vertices and so can be easily accessed from
@@ -120,6 +130,7 @@ public:
@warning This method should only be called if T inherits from Hashed4. */
T* Get(int p1, int p2, int p3, int p4 = -1 /* p4 optional */);
T* Get(int p1, int p2, int p3, int p4, int p5);
/// Get id of item whose parents are p1, p2... Create it if it doesn't exist.
/** @brief Get the "id" of an item, this "id" corresponding to the index of the
@@ -145,6 +156,7 @@ public:
@warning This method should only be called if T inherits from Hashed4. */
int GetId(int p1, int p2, int p3, int p4 = -1);
int GetId(int p1, int p2, int p3, int p4, int p5);
/// Find item whose parents are p1, p2... Return NULL if it doesn't exist.
/** @brief Item accessor with key (or parents) the pair 'p1', 'p2'. Return
@@ -169,6 +181,7 @@ public:
@warning This method should only be called if T inherits from Hashed4. */
T* Find(int p1, int p2, int p3, int p4 = -1);
T* Find(int p1, int p2, int p3, int p4, int p5);
/** @brief Item const accessor with key (or parents) the pair 'p1', 'p2'.
Return nullptr if no value correspond to the requested key.
@@ -192,6 +205,7 @@ public:
@warning This method should only be called if T inherits from Hashed4. */
const T* Find(int p1, int p2, int p3, int p4 = -1) const;
const T* Find(int p1, int p2, int p3, int p4, int p5) const;
/// Find id of item whose parents are p1, p2... Return -1 if it doesn't exist.
/** @brief Find the "id" of an item, this "id" corresponding to the index of
@@ -217,6 +231,7 @@ public:
@warning This method should only be called if T inherits from Hashed4. */
int FindId(int p1, int p2, int p3, int p4 = -1) const;
int FindId(int p1, int p2, int p3, int p4, int p5) const;
/// @brief Return the number of elements currently stored in the HashTable.
int Size() const { return Base::Size() - unused.Size(); }
@@ -283,6 +298,8 @@ public:
@warning This method should only be called if T inherits from Hashed4. */
void Reparent(int id, int new_p1, int new_p2, int new_p3, int new_p4 = -1);
void Reparent(int id, int new_p1, int new_p2, int new_p3, int new_p4,
int new_p5);
/// @brief Return total size of allocated memory (tables plus items), in bytes.
std::size_t MemoryUsage() const;
@@ -380,6 +397,9 @@ protected:
inline int Hash(size_t p1, size_t p2, size_t p3) const
{ return (984120265ul*p1 + 125965121ul*p2 + 495698413ul*p3) & mask; }
inline int Hash(int p1, int p2, int p3, int p4) const
{ return (984120265*p1 + 125965121*p2 + 495698413*p3 + 179424673*p4) & mask; }
// Delete() and Reparent() use one of these:
/// @brief Hash function for items of type T that inherit from Hashed2.
inline int Hash(const Hashed2& item) const
@@ -389,6 +409,9 @@ protected:
inline int Hash(const Hashed4& item) const
{ return Hash(item.p1, item.p2, item.p3); }
inline int Hash(const Hashed5& item) const
{ return Hash(item.p1, item.p2, item.p3, item.p4); };
/** @brief Search the index of the item associated to the key (p1,p2)
starting from the item with index @a id.
@@ -411,6 +434,7 @@ protected:
@warning This method should only be called if T inherits from Hashed4. */
int SearchList(int id, int p1, int p2, int p3) const;
int SearchList(int id, int p1, int p2, int p3, int p4) const;
/** @brief Insert the item 'id' into bin 'idx'.
@@ -581,6 +605,17 @@ inline void sort4(int &a, int &b, int &c, int &d)
sort3(b, c, d);
}
inline void sort5(int &a, int &b, int &c, int &d, int &e)
{
sort4(a,b,c,d);
sort4(b,c,d,e);
if (a > b)
{
int t = a; a = b; b = t;
}
}
inline void sort4_ext(int &a, int &b, int &c, int &d)
{
if (d < 0) // support optional last index
@@ -607,6 +642,12 @@ inline T* HashTable<T>::Get(int p1, int p2, int p3, int p4)
return &(Base::At(GetId(p1, p2, p3, p4)));
}
template<typename T>
inline T* HashTable<T>::Get(int p1, int p2, int p3, int p4, int p5)
{
return &(Base::At(GetId(p1, p2, p3, p4, p5)));
}
template<typename T>
int HashTable<T>::GetId(int p1, int p2)
{
@@ -670,6 +711,39 @@ int HashTable<T>::GetId(int p1, int p2, int p3, int p4)
return new_id;
}
template<typename T>
int HashTable<T>::GetId(int p1, int p2, int p3, int p4, int p5)
{
// search for the item in the hashtable
internal::sort5(p1, p2, p3, p4, p5);
int idx = Hash(p1, p2, p3, p4);
int id = SearchList(table[idx], p1, p2, p3, p4);
if (id >= 0) { return id; }
// not found - use an unused item or create a new one
int new_id;
if (unused.Size())
{
new_id = unused.Last();
unused.DeleteLast();
}
else
{
new_id = Base::Append();
}
T& item = Base::At(new_id);
item.p1 = p1;
item.p2 = p2;
item.p3 = p3;
item.p4 = p4;
// insert into hashtable
Insert(idx, new_id, item);
CheckRehash();
return new_id;
}
template<typename T>
inline T* HashTable<T>::Find(int p1, int p2)
{
@@ -684,6 +758,13 @@ inline T* HashTable<T>::Find(int p1, int p2, int p3, int p4)
return (id >= 0) ? &(Base::At(id)) : NULL;
}
template<typename T>
inline T* HashTable<T>::Find(int p1, int p2, int p3, int p4, int p5)
{
int id = FindId(p1, p2, p3, p4, p5);
return (id >= 0) ? &(Base::At(id)) : NULL;
}
template<typename T>
inline const T* HashTable<T>::Find(int p1, int p2) const
{
@@ -698,6 +779,13 @@ inline const T* HashTable<T>::Find(int p1, int p2, int p3, int p4) const
return (id >= 0) ? &(Base::At(id)) : NULL;
}
template<typename T>
inline const T* HashTable<T>::Find(int p1, int p2, int p3, int p4, int p5) const
{
int id = FindId(p1, p2, p3, p4, p5);
return (id >= 0) ? &(Base::At(id)) : NULL;
}
template<typename T>
int HashTable<T>::FindId(int p1, int p2) const
{
@@ -712,6 +800,13 @@ int HashTable<T>::FindId(int p1, int p2, int p3, int p4) const
return SearchList(table[Hash(p1, p2, p3)], p1, p2, p3);
}
template<typename T>
int HashTable<T>::FindId(int p1, int p2, int p3, int p4, int p5) const
{
internal::sort5(p1, p2, p3, p4, p5);
return SearchList(table[Hash(p1, p2, p3, p4)], p1, p2, p3, p4);
}
template<typename T>
int HashTable<T>::SearchList(int id, int p1, int p2) const
{
@@ -736,6 +831,18 @@ int HashTable<T>::SearchList(int id, int p1, int p2, int p3) const
return -1;
}
template<typename T>
int HashTable<T>::SearchList(int id, int p1, int p2, int p3, int p4) const
{
while (id >= 0)
{
const T& item = Base::At(id);
if (item.p1 == p1 && item.p2 == p2 && item.p3 == p3 && item.p4 == p4) { return id; }
id = item.next;
}
return -1;
}
template<typename T>
inline void HashTable<T>::CheckRehash()
{
@@ -877,6 +984,24 @@ void HashTable<T>::Reparent(int id,
Insert(new_idx, id, item);
}
template<typename T>
void HashTable<T>::Reparent(int id,
int new_p1, int new_p2, int new_p3, int new_p4, int new_p5)
{
T& item = Base::At(id);
Unlink(Hash(item), id);
internal::sort5(new_p1, new_p2, new_p3, new_p4, new_p5);
item.p1 = new_p1;
item.p2 = new_p2;
item.p3 = new_p3;
item.p4 = new_p4;
// reinsert under new parent IDs
int new_idx = Hash(new_p1, new_p2, new_p3, new_p4);
Insert(new_idx, id, item);
}
template<typename T>
std::size_t HashTable<T>::MemoryUsage() const
{
+247 -30
View File
@@ -10,6 +10,7 @@
// CONTRIBUTING.md for details.
#include <iostream>
#include "error.hpp"
#include "stable3d.hpp"
@@ -31,36 +32,6 @@ STable3D::STable3D (int nr)
NElem = 0;
}
inline void Sort3 (int &r, int &c, int &f)
{
int t;
if (r > c)
if (c > f)
{
t = r; r = f; f = t; // (r,c,f) --> (f,c,r)
}
else if (r > f)
{
t = r; r = c; c = f; f = t; // (r,c,f) --> (c,f,r)
}
else
{
t = r; r = c; c = t; // (r,c,f) --> (c,r,f)
}
else if (c > f)
{
if (r > f)
{
t = f; f = c; c = r; r = t; // (r,c,f) --> (f,r,c)
}
else
{
t = c; c = f; f = t; // (r,c,f) --> (r,f,c)
}
}
}
int STable3D::Push (int r, int c, int f)
{
STable3DNode *node;
@@ -225,4 +196,250 @@ void STable3D::Print(std::ostream & os) const
}
}
STable4D::STable4D (int nr)
{
int i;
Size = nr;
Rows = new STable4DNode *[nr];
for (i = 0; i < nr; i++)
{
Rows[i] = NULL;
}
NElem = 0;
}
int STable4D::Push (int r, int c, int f, int t)
{
STable4DNode *node;
MFEM_ASSERT(r != c && c != f && f != r && r!=t && c!=t && f!=t,
"STable4D::Push : r = " << r << ", c = " << c << ", f = " << f << ", t = " <<
t);
Sort4(r, c, f, t);
for (node = Rows[r]; node != NULL; node = node->Prev)
{
if (node->Column == c)
if (node->Floor == f)
if (node->Trace == t)
{
return node->Number;
}
}
#ifdef MFEM_USE_MEMALLOC
node = NodesMem.Alloc ();
#else
node = new STable4DNode;
#endif
node->Column = c;
node->Floor = f;
node->Trace = t;
node->Number = NElem;
node->Prev = Rows[r];
Rows[r] = node;
NElem++;
return (NElem-1);
}
int STable4D::operator() (int r, int c, int f, int t) const
{
STable4DNode *node;
Sort4(r, c, f, t);
for (node = Rows[r]; node != NULL; node = node->Prev)
{
if (node->Column == c)
if (node->Floor == f)
if (node->Trace == t)
{
return node->Number;
}
}
MFEM_ABORT("STable4D::operator(): (r,c,f,t) = (" << r << "," << c << "," << f <<
"," << t <<")");
return -1;
}
int STable4D::Index (int r, int c, int f, int t) const
{
STable4DNode *node;
Sort4(r, c, f, t);
for (node = Rows[r]; node != NULL; node = node->Prev)
{
if (node->Column == c)
if (node->Floor == f)
if (node->Trace == t)
{
return node->Number;
}
}
return -1;
}
STable4D::~STable4D ()
{
#ifdef MFEM_USE_MEMALLOC
// NodesMem.Clear(); // this is done implicitly
#else
for (int i = 0; i < Size; i++)
{
STable4DNode *aux, *node_p = Rows[i];
while (node_p != NULL)
{
aux = node_p;
node_p = node_p->Prev;
delete aux;
}
}
#endif
delete [] Rows;
}
STable5D::STable5D (int nr)
{
int i;
Size = nr;
Rows = new STable5DNode *[nr];
for (i = 0; i < nr; i++)
{
Rows[i] = NULL;
}
NElem = 0;
}
int STable5D::Push (int r, int c, int f, int t, int u)
{
STable5DNode *node;
MFEM_ASSERT(r != c && c != f && f != r && r!=t && c!=t && f!=t && r!=u &&
c!=u && f!=u && t!=u,
"STable5D::Push : r = " << r << ", c = " << c << ", f = " << f << ", t = " << t
<< ", u = " << u);
Sort5(r, c, f, t, u);
for (node = Rows[r]; node != NULL; node = node->Prev)
{
if (node->Column == c)
if (node->Floor == f)
if (node->Trace == t)
if (node->Next == u)
{
return node->Number;
}
}
#ifdef MFEM_USE_MEMALLOC
node = NodesMem.Alloc ();
#else
node = new STable5DNode;
#endif
node->Column = c;
node->Floor = f;
node->Trace = t;
node->Next = u;
node->Number = NElem;
node->Prev = Rows[r];
Rows[r] = node;
NElem++;
return (NElem-1);
}
int STable5D::operator() (int r, int c, int f, int t, int u) const
{
STable5DNode *node;
Sort5(r, c, f, t, u);
for (node = Rows[r]; node != NULL; node = node->Prev)
{
if (node->Column == c)
if (node->Floor == f)
if (node->Trace == t)
if (node->Next == u)
{
return node->Number;
}
}
MFEM_ABORT("STable4D::operator(): (r,c,f,t,u) = (" << r << "," << c << "," << f
<< "," << t << "," << u <<")");
return 0;
}
int STable5D::Index (int r, int c, int f, int t, int u) const
{
STable5DNode *node;
Sort5(r, c, f, t, u);
for (node = Rows[r]; node != NULL; node = node->Prev)
{
if (node->Column == c)
if (node->Floor == f)
if (node->Trace == t)
{
return node->Number;
}
}
return -1;
}
int STable5D::Push8 (int u1, int u2, int u3, int u4, int u5, int u6, int u7,
int u8)
{
Sort8(u1, u2, u3, u4, u5, u6, u7, u8);
return (*this).Push(u1,u2,u3,u4,u5);
}
int STable5D::operator() (int u1, int u2, int u3, int u4, int u5, int u6,
int u7, int u8) const
{
Sort8(u1, u2, u3, u4, u5, u6, u7, u8);
return (*this)(u1,u2,u3,u4,u5);
}
STable5D::~STable5D ()
{
#ifdef MFEM_USE_MEMALLOC
// NodesMem.Clear(); // this is done implicitly
#else
for (int i = 0; i < Size; i++)
{
STable5DNode *aux, *node_p = Rows[i];
while (node_p != NULL)
{
aux = node_p;
node_p = node_p->Prev;
delete aux;
}
}
#endif
delete [] Rows;
}
}
+159
View File
@@ -75,6 +75,165 @@ public:
~STable3D ();
};
class STable4DNode
{
public:
STable4DNode *Prev;
int Column, Floor, Trace, Number;
};
/// Symmetric 4D Table
class STable4D
{
private:
int Size, NElem;
STable4DNode **Rows;
#ifdef MFEM_USE_MEMALLOC
MemAlloc <STable4DNode, 1024> NodesMem;
#endif
public:
explicit STable4D (int nr);
int Push (int r, int c, int f, int t);
int operator() (int r, int c, int f, int t) const;
int Index (int r, int c, int f, int t) const;
int NumberOfElements() { return NElem; };
~STable4D ();
};
class STable5DNode
{
public:
STable5DNode *Prev;
int Column, Floor, Trace, Next, Number;
};
/// Symmetric 5D Table
class STable5D
{
private:
int Size, NElem;
STable5DNode **Rows;
#ifdef MFEM_USE_MEMALLOC
MemAlloc <STable5DNode, 1024> NodesMem;
#endif
public:
explicit STable5D (int nr);
int Push (int r, int c, int f, int t, int u);
int operator() (int r, int c, int f, int t, int u) const;
int Index (int r, int c, int f, int t, int u) const;
int Push8 (int u1, int u2, int u3, int u4, int u5, int u6, int u7, int u8);
int operator() (int u1, int u2, int u3, int u4, int u5, int u6, int u7,
int u8) const;
int NumberOfElements() { return NElem; };
~STable5D ();
};
inline void Sort3 (int &r, int &c, int &f)
{
int t;
if (r > c)
if (c > f)
{
t = r; r = f; f = t; // (r,c,f) --> (f,c,r)
}
else if (r > f)
{
t = r; r = c; c = f; f = t; // (r,c,f) --> (c,f,r)
}
else
{
t = r; r = c; c = t; // (r,c,f) --> (c,r,f)
}
else if (c > f)
{
if (r > f)
{
t = f; f = c; c = r; r = t; // (r,c,f) --> (f,r,c)
}
else
{
t = c; c = f; f = t; // (r,c,f) --> (r,f,c)
}
}
}
inline void Sort4 (int &r, int &c, int &f, int &u)
{
Sort3(c,f,u);
int t;
if (r > c)
{
if (r <= f) //(r, c, f, u) --> (c, r, f, u)
{
t = r; r = c; c = t;
}
else if (r <= u) //(r, c, f, u) --> (c, f, r, u)
{
t = r; r = c; c = t;
t = c; c = f; f = t;
}
else if (r > u) //(r, c, f, u) --> (c, f, u, r)
{
t = r; r = c; c = t;
t = c; c = f; f = t;
t = f; f = u; u = t;
}
}
}
inline void Sort5 (int &r, int &c, int &f, int &u, int &v)
{
Sort4(r,c,f,u);
Sort4(c,f,u,v);
if (r > c)
{
int t = r; r = c; c = t;
}
}
//should be optimized
inline void Sort8 (int &u1, int &u2, int &u3, int &u4, int &u5, int &u6,
int &u7, int &u8)
{
Sort5(u1,u2,u3,u4,u5);
Sort5(u4,u5,u6,u7,u8);
Sort5(u1,u2,u3,u4,u5);
Sort5(u4,u5,u6,u7,u8);
Sort5(u1,u2,u3,u4,u5);
Sort5(u4,u5,u6,u7,u8);
Sort5(u1,u2,u3,u4,u5);
Sort5(u4,u5,u6,u7,u8);
}
}
#endif
+103 -10
View File
@@ -647,6 +647,7 @@ real_t DenseMatrix::Det() const
DenseMatrixInverse lu_factors(*this);
return lu_factors.Det();
}
}
// not reachable
@@ -675,6 +676,24 @@ real_t DenseMatrix::Weight() const
real_t F = d[0] * d[3] + d[1] * d[4] + d[2] * d[5];
return sqrt(E * G - F * F);
}
else if ((Height() == 4) && (Width() == 1))
{
return sqrt(data[0] * data[0] + data[1] * data[1] + data[2] * data[2]
+ data[3] * data[3]);
}
else if ((Height() == 4) && (Width() == 3))
{
const double *d = data;
double A = d[0]*d[0] + d[1]*d[1] + d[2]*d[2] + d[3]*d[3];
double B = d[0]*d[4] + d[1]*d[5] + d[2]*d[6] + d[3]*d[7];
double C = d[0]*d[8] + d[1]*d[9] + d[2]*d[10] + d[3]*d[11];
double D = d[4]*d[4] + d[5]*d[5] + d[6]*d[6] + d[7]*d[7];
double E = d[4]*d[8] + d[5]*d[9] + d[6]*d[10] + d[7]*d[11];
double F = d[8]*d[8] + d[9]*d[9] + d[10]*d[10] + d[11]*d[11];
return sqrt( C *( 2*B*E - C*D ) - A*E*E + F * ( A * D - B * B) );
}
mfem_error("DenseMatrix::Weight(): mismatched or unsupported dimensions");
return 0.0;
}
@@ -1442,7 +1461,7 @@ int DenseMatrix::Rank(real_t tol) const
real_t DenseMatrix::CalcSingularvalue(const int i) const
{
MFEM_ASSERT(Height() == Width() && Height() > 0 && Height() < 4,
MFEM_ASSERT(Height() == Width() && Height() > 0 && Height() < 5,
"The matrix must be square and sized 1, 2, or 3 to compute the"
" singular values."
<< " Height() = " << Height()
@@ -1459,10 +1478,16 @@ real_t DenseMatrix::CalcSingularvalue(const int i) const
{
return kernels::CalcSingularvalue<2>(d,i);
}
else
else if (n == 3)
{
return kernels::CalcSingularvalue<3>(d,i);
}
else
{
Vector sv(n);
SingularValues(sv);
return sv(i);
}
}
void DenseMatrix::CalcEigenvalues(real_t *lambda, real_t *vec) const
@@ -2670,7 +2695,7 @@ void AddMult(const DenseMatrix &b, const DenseMatrix &c, DenseMatrix &a)
void CalcAdjugate(const DenseMatrix &a, DenseMatrix &adja)
{
#ifdef MFEM_DEBUG
if (a.Width() > a.Height() || a.Width() < 1 || a.Height() > 3)
if (a.Width() > a.Height() || a.Width() < 1 || a.Height() > 4)
{
mfem_error("CalcAdjugate(...): unsupported dimensions");
}
@@ -2723,7 +2748,7 @@ void CalcAdjugate(const DenseMatrix &a, DenseMatrix &adja)
adja(1,0) = -a(1,0);
adja(1,1) = a(0,0);
}
else
else if (a.Width() == 3)
{
adja(0,0) = a(1,1)*a(2,2)-a(1,2)*a(2,1);
adja(0,1) = a(0,2)*a(2,1)-a(0,1)*a(2,2);
@@ -2737,13 +2762,51 @@ void CalcAdjugate(const DenseMatrix &a, DenseMatrix &adja)
adja(2,1) = a(0,1)*a(2,0)-a(0,0)*a(2,1);
adja(2,2) = a(0,0)*a(1,1)-a(0,1)*a(1,0);
}
else if (a.Width() == 4)
{
adja(0,0) = -a(1,3)*a(2,2)*a(3,1)+a(1,2)*a(2,3)*a(3,1)+a(1,3)*a(2,1)*a(3,2)-a(1,
1)*a(2,3)*a(3,2)-a(1,2)*a(2,1)*a(3,3)+a(1,1)*a(2,2)*a(3,3);
adja(0,1) = a(0,3)*a(2,2)*a(3,1)-a(0,2)*a(2,3)*a(3,1)-a(0,3)*a(2,1)*a(3,2)+a(0,
1)*a(2,3)*a(3,2)+a(0,2)*a(2,1)*a(3,3)-a(0,1)*a(2,2)*a(3,3);
adja(0,2) = -a(0,3)*a(1,2)*a(3,1)+a(0,2)*a(1,3)*a(3,1)+a(0,3)*a(1,1)*a(3,2)-a(0,
1)*a(1,3)*a(3,2)-a(0,2)*a(1,1)*a(3,3)+a(0,1)*a(1,2)*a(3,3);
adja(0,3) = a(0,3)*a(1,2)*a(2,1)-a(0,2)*a(1,3)*a(2,1)-a(0,3)*a(1,1)*a(2,2)+a(0,
1)*a(1,3)*a(2,2)+a(0,2)*a(1,1)*a(2,3)-a(0,1)*a(1,2)*a(2,3);
adja(1,0) = a(1,3)*a(2,2)*a(3,0)-a(1,2)*a(2,3)*a(3,0)-a(1,3)*a(2,0)*a(3,2)+a(1,
0)*a(2,3)*a(3,2)+a(1,2)*a(2,0)*a(3,3)-a(1,0)*a(2,2)*a(3,3);
adja(1,1) = -a(0,3)*a(2,2)*a(3,0)+a(0,2)*a(2,3)*a(3,0)+a(0,3)*a(2,0)*a(3,2)-a(0,
0)*a(2,3)*a(3,2)-a(0,2)*a(2,0)*a(3,3)+a(0,0)*a(2,2)*a(3,3);
adja(1,2) = a(0,3)*a(1,2)*a(3,0)-a(0,2)*a(1,3)*a(3,0)-a(0,3)*a(1,0)*a(3,2)+a(0,
0)*a(1,3)*a(3,2)+a(0,2)*a(1,0)*a(3,3)-a(0,0)*a(1,2)*a(3,3);
adja(1,3) = -a(0,3)*a(1,2)*a(2,0)+a(0,2)*a(1,3)*a(2,0)+a(0,3)*a(1,0)*a(2,2)-a(0,
0)*a(1,3)*a(2,2)-a(0,2)*a(1,0)*a(2,3)+a(0,0)*a(1,2)*a(2,3);
adja(2,0) = -a(1,3)*a(2,1)*a(3,0)+a(1,1)*a(2,3)*a(3,0)+a(1,3)*a(2,0)*a(3,1)-a(1,
0)*a(2,3)*a(3,1)-a(1,1)*a(2,0)*a(3,3)+a(1,0)*a(2,1)*a(3,3);
adja(2,1) = a(0,3)*a(2,1)*a(3,0)-a(0,1)*a(2,3)*a(3,0)-a(0,3)*a(2,0)*a(3,1)+a(0,
0)*a(2,3)*a(3,1)+a(0,1)*a(2,0)*a(3,3)-a(0,0)*a(2,1)*a(3,3);
adja(2,2) = -a(0,3)*a(1,1)*a(3,0)+a(0,1)*a(1,3)*a(3,0)+a(0,3)*a(1,0)*a(3,1)-a(0,
0)*a(1,3)*a(3,1)-a(0,1)*a(1,0)*a(3,3)+a(0,0)*a(1,1)*a(3,3);
adja(2,3) = a(0,3)*a(1,1)*a(2,0)-a(0,1)*a(1,3)*a(2,0)-a(0,3)*a(1,0)*a(2,1)+a(0,
0)*a(1,3)*a(2,1)+a(0,1)*a(1,0)*a(2,3)-a(0,0)*a(1,1)*a(2,3);
adja(3,0) = a(1,2)*a(2,1)*a(3,0)-a(1,1)*a(2,2)*a(3,0)-a(1,2)*a(2,0)*a(3,1)+a(1,
0)*a(2,2)*a(3,1)+a(1,1)*a(2,0)*a(3,2)-a(1,0)*a(2,1)*a(3,2);
adja(3,1) = -a(0,2)*a(2,1)*a(3,0)+a(0,1)*a(2,2)*a(3,0)+a(0,2)*a(2,0)*a(3,1)-a(0,
0)*a(2,2)*a(3,1)-a(0,1)*a(2,0)*a(3,2)+a(0,0)*a(2,1)*a(3,2);
adja(3,2) = a(0,2)*a(1,1)*a(3,0)-a(0,1)*a(1,2)*a(3,0)-a(0,2)*a(1,0)*a(3,1)+a(0,
0)*a(1,2)*a(3,1)+a(0,1)*a(1,0)*a(3,2)-a(0,0)*a(1,1)*a(3,2);
adja(3,3) = -a(0,2)*a(1,1)*a(2,0)+a(0,1)*a(1,2)*a(2,0)+a(0,2)*a(1,0)*a(2,1)-a(0,
0)*a(1,2)*a(2,1)-a(0,1)*a(1,0)*a(2,2)+a(0,0)*a(1,1)*a(2,2);
}
}
void CalcAdjugateTranspose(const DenseMatrix &a, DenseMatrix &adjat)
{
#ifdef MFEM_DEBUG
if (a.Height() != a.Width() || adjat.Height() != adjat.Width() ||
a.Width() != adjat.Width() || a.Width() < 1 || a.Width() > 3)
a.Width() != adjat.Width() || a.Width() < 1 || a.Width() > 4)
{
mfem_error("CalcAdjugateTranspose(...): dimension mismatch");
}
@@ -2759,7 +2822,7 @@ void CalcAdjugateTranspose(const DenseMatrix &a, DenseMatrix &adjat)
adjat(0,1) = -a(1,0);
adjat(1,1) = a(0,0);
}
else
else if (a.Width() == 3)
{
adjat(0,0) = a(1,1)*a(2,2)-a(1,2)*a(2,1);
adjat(1,0) = a(0,2)*a(2,1)-a(0,1)*a(2,2);
@@ -2773,11 +2836,17 @@ void CalcAdjugateTranspose(const DenseMatrix &a, DenseMatrix &adjat)
adjat(1,2) = a(0,1)*a(2,0)-a(0,0)*a(2,1);
adjat(2,2) = a(0,0)*a(1,1)-a(0,1)*a(1,0);
}
else if (a.Width() == 4)
{
CalcAdjugate(a, adjat);
adjat.Transpose();
// mfem_error("CalcAdjugateTranspose(...) - please implement the case for d = 4");
}
}
void CalcInverse(const DenseMatrix &a, DenseMatrix &inva)
{
MFEM_ASSERT(a.Width() <= a.Height() && a.Width() >= 1 && a.Height() <= 3, "");
MFEM_ASSERT(a.Width() <= a.Height() && a.Width() >= 1 && a.Height() <= 4, "");
MFEM_ASSERT(inva.Height() == a.Width(), "incorrect dimensions");
MFEM_ASSERT(inva.Width() == a.Height(), "incorrect dimensions");
@@ -2820,6 +2889,12 @@ void CalcInverse(const DenseMatrix &a, DenseMatrix &inva)
case 3:
kernels::CalcInverse<3>(a.Data(), inva.Data());
break;
case 4:
{
CalcAdjugate(a, inva);
inva *= 1./a.Det();
break;
}
}
}
@@ -2859,15 +2934,22 @@ void CalcInverseTranspose(const DenseMatrix &a, DenseMatrix &inva)
inva(1,2) = (a(0,1)*a(2,0)-a(0,0)*a(2,1))*t;
inva(2,2) = (a(0,0)*a(1,1)-a(0,1)*a(1,0))*t;
break;
case 4:
{
CalcAdjugateTranspose(a, inva);
inva *= t;
break;
}
}
}
void CalcOrtho(const DenseMatrix &J, Vector &n)
{
MFEM_ASSERT( ((J.Height() == 2 && J.Width() == 1)
|| (J.Height() == 3 && J.Width() == 2))
|| (J.Height() == 3 && J.Width() == 2)
|| (J.Height() == 4 && J.Width() == 3))
&& (J.Height() == n.Size()),
"Matrix must be 3x2 or 2x1, "
"Matrix must be 4x3, 3x2 or 2x1, "
<< "and the Vector must be sized with the rows. "
<< " J.Height() = " << J.Height()
<< ", J.Width() = " << J.Width()
@@ -2880,12 +2962,23 @@ void CalcOrtho(const DenseMatrix &J, Vector &n)
n(0) = d[1];
n(1) = -d[0];
}
else
else if (J.Height() == 3)
{
n(0) = d[1]*d[5] - d[2]*d[4];
n(1) = d[2]*d[3] - d[0]*d[5];
n(2) = d[0]*d[4] - d[1]*d[3];
}
else if (J.Height() == 4)
{
n(0) = -d[3]*d[6]*d[9]+d[2]*d[7]*d[9]+d[3]*d[5]*d[10]-d[1]*d[7]*d[10]
-d[2]*d[5]*d[11]+d[1]*d[6]*d[11];
n(1) = d[3]*d[6]*d[8]-d[2]*d[7]*d[8]-d[3]*d[4]*d[10]+d[0]*d[7]*d[10]
+d[2]*d[4]*d[11]-d[0]*d[6]*d[11];
n(2) = -d[3]*d[5]*d[8]+d[1]*d[7]*d[8]+d[3]*d[4]*d[9]-d[0]*d[7]*d[9]
-d[1]*d[4]*d[11]+d[0]*d[5]*d[11];
n(3) = d[2]*d[5]*d[8]-d[1]*d[6]*d[8]-d[2]*d[4]*d[9]+d[0]*d[6]*d[9]
+d[1]*d[4]*d[10]-d[0]*d[5]*d[10];
}
}
void MultAAt(const DenseMatrix &a, DenseMatrix &aat)
+1
View File
@@ -3513,6 +3513,7 @@ HypreSmoother::HypreSmoother() : Solver()
omega = 1.0;
poly_order = 2;
poly_fraction = .3;
poly_iter = 10;
lambda = 0.5;
mu = -0.5;
taubin_iter = 40;
+2
View File
@@ -1049,6 +1049,8 @@ protected:
real_t poly_fraction;
/// Apply the polynomial smoother to A or D^{-1/2} A D^{-1/2}
int poly_scale;
/// Number of CG iterations to determine eigenvalue estimates, 0 means the max norm
int poly_iter;
/// Taubin's lambda-mu method parameters
real_t lambda;
+5 -1
View File
@@ -30,6 +30,8 @@ set(SRCS
vertex.cpp
vtk.cpp
wedge.cpp
pentatope.cpp
tesseract.cpp
submesh/submesh.cpp
submesh/submesh_utils.cpp
submesh/transfermap.cpp
@@ -57,11 +59,13 @@ set(HDRS
vertex.hpp
vtk.hpp
wedge.hpp
pentatope.hpp
tesseract.hpp
submesh/submesh.hpp
submesh/submesh_utils.hpp
submesh/transfer_category.hpp
submesh/transfermap.hpp
)
)
if (MFEM_USE_MPI)
list(APPEND SRCS
+16 -1
View File
@@ -39,7 +39,8 @@ public:
/// Constants for the classes derived from Element.
enum Type { POINT, SEGMENT, TRIANGLE, QUADRILATERAL,
TETRAHEDRON, HEXAHEDRON, WEDGE, PYRAMID
TETRAHEDRON, HEXAHEDRON, WEDGE, PYRAMID,
PENTATOPE, TESSERACT
};
/// Default element constructor.
@@ -76,8 +77,22 @@ public:
virtual int GetNEdges() const = 0;
virtual int GetNPlanars() const
{
mfem_error ("Element::GetNPlanars(...)\n"
" is not implemented for this class!");
return 0;
}
virtual const int *GetEdgeVertices(int) const = 0;
virtual const int *GetPlanarsVertices(int) const
{
mfem_error ("Element::GetPlanarsVertices(...)\n"
" is not implemented for this class!");
return NULL;
}
/// @deprecated Use GetNFaces(void) and GetNFaceVertices(int) instead.
MFEM_DEPRECATED virtual int GetNFaces(int &nFaceVertices) const = 0;
+2214 -32
View File
File diff suppressed because it is too large Load Diff
+155 -1
View File
@@ -70,6 +70,7 @@ protected:
int NumOfVertices, NumOfElements, NumOfBdrElements;
int NumOfEdges, NumOfFaces;
int NumOfPlanars;
/** These variables store the number of Interior and Boundary faces. Calling
fes->GetMesh()->GetNBE() doesn't return the expected value in 3D because
periodic meshes in 3D have some of their faces marked as boundary for
@@ -97,6 +98,13 @@ protected:
Array<Vertex> vertices;
Array<Element *> boundary;
Array<Element *> faces;
Array<Element *> planars; //only for 4d meshes
Array<bool> swappedFaces; //only for 4d meshes
Array<bool> swappedBdr; //only for 4d meshes
// Flag to indicate if two neighbours are reflected neighbours (4D)
bool is_reflected;
/** @brief This structure stores the low level information necessary to
interpret the configuration of elements on a specific face. This
@@ -226,10 +234,12 @@ protected:
Table *el_to_edge;
Table *el_to_face;
Table *el_to_planar; // for 4D
Table *el_to_el;
Array<int> be_to_face; // faces = vertices (1D), edges (2D), faces (3D)
Table *bel_to_edge; // for 3D only
Table *bel_to_planar; // for 4D only
// Note that the following tables are owned by this class and should not be
// deleted by the caller. Of these three tables, only face_edge and
@@ -238,9 +248,13 @@ protected:
mutable Table *face_edge; // Returned by GetFaceEdgeTable().
mutable Table *edge_vertex; // Returned by GetEdgeVertexTable().
mutable Table *face_planar; // for 4D
mutable Table *planar_edge; // for 4D
IsoparametricTransformation Transformation, Transformation2;
IsoparametricTransformation BdrTransformation;
IsoparametricTransformation FaceTransformation, EdgeTransformation;
IsoparametricTransformation FaceTransformation, PlanarTransformation,
EdgeTransformation;
FaceElementTransformations FaceElemTr;
// refinement embeddings for forward compatibility with NCMesh
@@ -273,6 +287,8 @@ public:
typedef Geometry::Constants<Geometry::CUBE> hex_t;
typedef Geometry::Constants<Geometry::PRISM> pri_t;
typedef Geometry::Constants<Geometry::PYRAMID> pyr_t;
typedef Geometry::Constants<Geometry::PENTATOPE> pent_t;
typedef Geometry::Constants<Geometry::TESSERACT> tess_t;
enum Operation { NONE, REFINE, DEREFINE, REBALANCE };
@@ -355,6 +371,10 @@ protected:
void GetEdgeOrdering(const DSTable &v_to_v, Array<int> &order);
virtual void MarkTetMeshForRefinement(const DSTable &v_to_v);
// Removed 2025 November
// virtual void MarkTetMeshForRefinement(DSTable &v_to_v);
virtual void MakeReflectedPentMesh();
// Methods used to prepare and apply permutation of the mesh nodes assuming
// that the mesh elements may be rotated (e.g. to mark triangle or tet edges
// for refinement) between the two calls - PrepareNodeReorder() and
@@ -365,6 +385,8 @@ protected:
STable3D *GetFacesTable();
STable3D *GetElementToFaceTable(int ret_ftbl = 0);
STable4D *GetElementToFaceTable4D(int ret_ftbl = 0);
STable3D *GetElementToPlanarTable(int ret_ftbl = 0);
/** Red refinement. Element with index i is refined. The default
red refinement for now is Uniform. */
@@ -387,6 +409,9 @@ protected:
/// Bisect a boundary triangle: boundary element with index @a i is bisected.
void BdrBisection(int i, const HashTable<Hashed2> &);
void RedRefinementPentatope(int i, HashTable<Hashed2> & v_to_v);
void RedRefinementBoundaryTet(int i, HashTable<Hashed2> & v_to_v);
/** Uniform Refinement. Element with index i is refined uniformly. */
void UniformRefinement(int i, const DSTable &, int *, int *, int *);
@@ -476,6 +501,8 @@ protected:
int i) const;
void GetLocalQuadToPyrTransformation(IsoparametricTransformation &loc,
int i) const;
void GetLocalTetToPentTransformation(IsoparametricTransformation &loc,
int i) const;
/** Used in GetFaceElementTransformations to account for the fact that a
slave face occupies only a portion of its master face. */
@@ -513,6 +540,8 @@ protected:
/// Returns the orientation of "test" relative to "base"
static int GetTetOrientation(const int *base, const int *test);
static int GetHexOrientation(const int * base, const int * test);
static void GetElementArrayEdgeTable(const Array<Element*> &elem_array,
const DSTable &v_to_v,
Table &el_to_edge);
@@ -534,6 +563,15 @@ protected:
void AddQuadFaceElement (int lf, int gf, int el,
int v0, int v1, int v2, int v3);
void AddTetrahedralFaceElement(int lf, int gf, int el,
int v0, int v1, int v2, int v3);
void AddHexahedralFaceElement(int lf, int gf, int el,
int v0, int v1, int v2, int v3,
int v4, int v5, int v6, int v7);
/** For a serial Mesh, return true if the face is interior. For a parallel
ParMesh return true if the face is interior or shared. In parallel, this
method only works if the face neighbor data is exchanged. */
@@ -542,10 +580,14 @@ protected:
return FaceIsInterior(FaceNo) || (faces_info[FaceNo].Elem2Inf >= 0);
}
//swap first two entries of *a
inline void Swap(int *a) const;
void FreeElement(Element *E);
void GenerateFaces();
void GenerateNCFaceInfo();
void GeneratePlanars();
/// Begin construction of a mesh
void InitMesh(int Dim_, int spaceDim_, int NVert, int NElem, int NBdrElem);
@@ -565,6 +607,16 @@ protected:
std::string section_delimiter = "",
const std::string &comments = "") const;
/** Creates mesh for the hyper-prism spatial_mesh x[0,st], divided into
4*nt*spatial_mesh.NumElem pentatopes. */
void Make4D(Mesh* spatial_mesh, int nt, Element::Type type, double st);
/** Creates mesh for the 4-parallelotope [0,sx]x[0,sy]x[0,sz]x[0,st], divided into
nx*ny*nz*nt tesseracts if type=TESSERACT or into 24*nx*ny*nz*nt pentatopes if
type=PENTATOPE. */
void Make4D(int nx, int ny, int nz, int nt, Element::Type type, double sx,
double sy, double sz, double st);
/// @brief Creates a mesh for the parallelepiped [0,sx]x[0,sy]x[0,sz],
/// divided into nx*ny*nz hexahedra if @a type = HEXAHEDRON or into
/// 6*nx*ny*nz tetrahedrons if @a type = TETRAHEDRON.
@@ -930,6 +982,11 @@ public:
/// 8 vertices @a vi.
void AddHexAsPyramids(const int *vi, int attr = 1);
int AddPent(const int *vi, int attr = 1);
int AddTes(const int *vi, int attr = 1);
void AddTesAsPentatopes(const int *vi, int attr = 1);
void AddHyperPrismAsPentatopes(const int *vi, int attr = 1);
/// @brief Adds 24 tetrahedrons to the mesh by splitting a hexahedron.
///
/// @a vi are the 8 vertices of the hexahedron, @a hex_face_verts has the
@@ -971,6 +1028,10 @@ public:
int AddBdrQuad(int v1, int v2, int v3, int v4, int attr = 1);
int AddBdrQuad(const int *vi, int attr = 1);
void AddBdrQuadAsTriangles(const int *vi, int attr = 1);
int AddBdrTet(const int *vi, int attr = 1);
int AddBdrHex(const int *vi, int attr = 1);
void AddBdrHexAsTets(const int *vi, int perm, int attr = 1);
void AddBdrPrismAsTets(const int *vi, int attr = 1);
int AddBdrPoint(int v, int attr = 1);
@@ -990,6 +1051,8 @@ public:
/// Finalize the construction of a hexahedral Mesh.
void FinalizeHexMesh(int generate_edges = 0, int refine = 0,
bool fix_orientation = true);
void FinalizeTesMesh(int generate_edges = 0, int refine = 0,
bool fix_orientation = true);
/// Finalize the construction of any type of Mesh.
/** This method calls FinalizeTopology() and Finalize(). */
void FinalizeMesh(int refine = 0, bool fix_orientation = true);
@@ -1155,6 +1218,32 @@ public:
/// @}
/** Creates mesh for the hyper-prism spatial_mesh x[0,st], divided into
4*nt*spatial_mesh.NumElem pentatopes. If refine = true (default) the
mesh is made conforming for the bisection algorithm, i.e., each
pentatope is again subdivided into 60 sub-pentatopes. */
Mesh(Mesh* spatial_mesh, int nt, Element::Type type, bool refine = true, double st = 1.0)
: attribute_sets(attributes), bdr_attribute_sets(bdr_attributes)
{
Make4D(spatial_mesh, nt, type, st);
Finalize(refine, true);
}
/** Creates mesh for the 4-parallelotope [0,sx]x[0,sy]x[0,sz]x[0,st], divided into
nx*ny*nz*nt tesseracts if type=TESSERACT or into 24*nx*ny*nz*nt pentatopes if
type=PENTATOPE. If refine = true (default) the mesh is made conforming
for the bisection algorithm, i.e., each pentatope is again subdivided
into 60 sub-pentatopes. */
Mesh(int nx, int ny, int nz, int nt, Element::Type type, bool refine = true,
double sx = 1.0, double sy = 1.0, double sz = 1.0, double st = 1.0)
: attribute_sets(attributes), bdr_attribute_sets(bdr_attributes)
{
Make4D(nx, ny, nz, nt, type, sx, sy, sz, st);
Finalize(refine,true);
}
/// @name Information about the mesh as a whole
/// @{
@@ -1171,6 +1260,9 @@ public:
inline int EulerNumber2D() const
{ return NumOfVertices - NumOfEdges + NumOfElements; }
inline int EulerNumber4D() const
{ return NumOfVertices - NumOfEdges + NumOfPlanars - NumOfFaces + NumOfElements;}
/** @brief Get the mesh generator/type.
The purpose of this is to be able to quickly tell what type of elements
@@ -1236,6 +1328,9 @@ public:
/// Return the number of faces in a 3D mesh.
inline int GetNFaces() const { return NumOfFaces; }
/// Return the number of planars in a 4D mesh.
inline int GetNPlanars() const { return NumOfPlanars; }
/// Return the number of faces (3D), edges (2D) or vertices (1D).
int GetNumFaces() const;
@@ -1291,6 +1386,11 @@ public:
/// the Element object itself should not be deleted by the caller.
Element *GetElement(int i) { return elements[i]; }
bool getSwappedElementInfo(int i) const { return false; }
bool getSwappedFaceElementInfo(int i) const { return swappedFaces[i]; }
bool getSwappedBdrElementInfo(int i) const { return swappedBdr[i]; }
/// @brief Return pointer to the i'th boundary element object
///
/// The index @a i should be in the range [0, Mesh::GetNBE())
@@ -1370,6 +1470,14 @@ public:
/// Return the Geometry::Type associated with face @a i.
Geometry::Type GetFaceGeometry(int i) const;
const Element *GetPlanar(int i) const
{ return planars[i]; }
Geometry::Type GetPlanarBaseGeometry(int i) const
{
return planars[i]->GetGeometryType();
}
Geometry::Type GetElementGeometry(int i) const
{
return elements[i]->GetGeometryType();
@@ -1380,6 +1488,8 @@ public:
return boundary[i]->GetGeometryType();
}
Geometry::Type GetBdrPlanarBaseGeometry(int i) const;
/// Deprecated in favor of Mesh::GetFaceGeometry
MFEM_DEPRECATED Geometry::Type GetFaceBaseGeometry(int i) const
{ return GetFaceGeometry(i); }
@@ -1450,10 +1560,21 @@ public:
/// Return the indices and the orientations of all edges of bdr element i.
void GetBdrElementEdges(int i, Array<int> &edges, Array<int> &cor) const;
/// Return the indices and the orientations of all planars of element i.
void GetBdrElementPlanars(int i, Array<int> &pls, Array<int> &cor) const;
/** Return the indices and the orientations of all edges of face i.
Works for both 2D (face=edge) and 3D faces. */
void GetFaceEdges(int i, Array<int> &edges, Array<int> &o) const;
/** Return the indices and the orientations of all edges of planar i.
Works only in 4D. */
void GetPlanarEdges(int i, Array<int> &, Array<int> &) const;
/** Return the indices and the orientations of all planars of face i.
Works for 4D faces. */
void GetFacePlanars(int i, Array<int> &, Array<int> &) const;
/// Returns the indices of the vertices of face i.
void GetFaceVertices(int i, Array<int> &vert) const
{
@@ -1470,6 +1591,9 @@ public:
/// Returns the indices of the vertices of edge i.
void GetEdgeVertices(int i, Array<int> &vert) const;
/// Returns the indices of the vertices of planar i.
void GetPlanVertices(int i, Array<int> &vert) const;
/// Return the indices and the orientations of all faces of element i.
void GetElementFaces(int i, Array<int> &faces, Array<int> &ori) const;
@@ -1485,6 +1609,9 @@ public:
GetElementEdges/GetBdrElementEdges. */
void GetBdrElementFace(int i, int *f, int *o) const;
/// Return the indices and the orientations of all planars of element i.
void GetElementPlanars(int i, Array<int> &pls, Array<int> &cor) const;
/** @brief For the given boundary element, bdr_el, return its adjacent
element and its info, i.e. 64*local_bdr_index+bdr_orientation.
@@ -1553,6 +1680,15 @@ public:
/// @note The returned object should NOT be deleted by the caller.
Table *GetEdgeVertexTable() const;
Table *GetFacePlanarTable() const;
/// Returns the planar-to-edge Table (4D)
///
/// @note The returned object should NOT be deleted by the caller.
Table *GetPlanarEdgeTable() const;
/** Return vertex to vertex table. The connections stored in the table
are from smaller to bigger vertex index, i.e. if i<j and (i, j) is
in the table, then (j, i) is not stored.
@@ -1682,6 +1818,13 @@ public:
/// Also, the returned object should NOT be deleted by the caller.
ElementTransformation *GetEdgeTransformation(int EdgeNo);
/** Returns the transformation defining the given planar element.
The transformation is stored in a user-defined variable. */
void GetPlanarTransformation(int i, IsoparametricTransformation *PlTr);
/// Returns the transformation defining the given face element
ElementTransformation *GetPlanarTransformation(int PlanarNo);
/// Returns (a pointer to an object containing) the following data:
///
/// 1) Elem1No - the index of the first element that contains this face this
@@ -2014,6 +2157,10 @@ public:
/// @}
const Table &ElementToPlanTable() const;
void ReplaceBoundaryFromFaces();
/// @name Methods related to mesh partitioning
/// @{
@@ -2917,6 +3064,13 @@ Mesh *Extrude1D(Mesh *mesh, const int ny, const real_t sy,
/// Extrude a 2D mesh
Mesh *Extrude2D(Mesh *mesh, const int nz, const real_t sz);
inline void Mesh::Swap(int *a) const
{
int temp = a[0];
a[0] = a[1];
a[1] = temp;
}
// shift cyclically 3 integers left-to-right
inline void ShiftRight(int &a, int &b, int &c)
{
+2
View File
@@ -22,6 +22,8 @@
#include "quadrilateral.hpp"
#include "hexahedron.hpp"
#include "tetrahedron.hpp"
#include "pentatope.hpp"
#include "tesseract.hpp"
#include "ncmesh.hpp"
#include "mesh.hpp"
#include "mesh_operators.hpp"
+1 -1
View File
@@ -2452,7 +2452,7 @@ const real_t* NCMesh::CalcVertexPos(int node) const
const real_t* pos1 = CalcVertexPos(nd.p1);
const real_t* pos2 = CalcVertexPos(nd.p2);
for (int i = 0; i < 3; i++)
for (int i = 0; i < Dim; i++) // TODO check if any memory violations occur
{
tv.pos[i] = (pos1[i] + pos2[i]) * 0.5;
}
+9 -4
View File
@@ -935,7 +935,7 @@ protected: // implementation
struct Point
{
int dim;
real_t coord[3];
real_t coord[4];
Point() { dim = 0; }
@@ -950,6 +950,9 @@ protected: // implementation
Point(real_t x, real_t y, real_t z)
{ dim = 3; coord[0] = x; coord[1] = y; coord[2] = z; }
Point(double x, double y, double z, double t)
{ dim = 4; coord[0] = x; coord[1] = y; coord[2] = z; coord[3] = t; }
Point(const Point& p0, const Point& p1)
{
dim = p0.dim;
@@ -1010,13 +1013,14 @@ protected: // implementation
PointMatrix(const Point& p0, const Point& p1, const Point& p2, const Point& p3)
{ np = 4; points[0] = p0; points[1] = p1; points[2] = p2; points[3] = p3; }
PointMatrix(const Point& p0, const Point& p1, const Point& p2,
const Point& p3, const Point& p4)
PointMatrix(const Point& p0, const Point& p1, const Point& p2, const Point& p3,
const Point& p4)
{
np = 5;
points[0] = p0; points[1] = p1; points[2] = p2;
points[3] = p3; points[4] = p4;
}
PointMatrix(const Point& p0, const Point& p1, const Point& p2,
const Point& p3, const Point& p4, const Point& p5)
{
@@ -1024,6 +1028,7 @@ protected: // implementation
points[0] = p0; points[1] = p1; points[2] = p2;
points[3] = p3; points[4] = p4; points[5] = p5;
}
PointMatrix(const Point& p0, const Point& p1, const Point& p2,
const Point& p3, const Point& p4, const Point& p5,
const Point& p6, const Point& p7)
@@ -1072,7 +1077,7 @@ protected: // implementation
struct TmpVertex
{
bool valid, visited;
real_t pos[3];
real_t pos[4];
TmpVertex() : valid(false), visited(false) {}
};
+246
View File
@@ -0,0 +1,246 @@
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
// reserved. See file COPYRIGHT for details.
//
// This file is part of the MFEM library. For more information and source code
// availability see http://mfem.googlecode.com.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the GNU Lesser General Public License (as published by the Free
// Software Foundation) version 2.1 dated February 1999.
// Implementation of class Pentatope
#include "mesh_headers.hpp"
namespace mfem
{
Pentatope::Pentatope(const int *ind, int attr, unsigned char f)
: Element(Geometry::PENTATOPE)
{
attribute = attr;
for (int i = 0; i < 5; i++)
{
indices[i] = ind[i];
}
transform = 0;
flag = f;
}
Pentatope::Pentatope(int ind1, int ind2, int ind3, int ind4, int ind5, int attr, unsigned char f)
: Element(Geometry::PENTATOPE)
{
attribute = attr;
indices[0] = ind1;
indices[1] = ind2;
indices[2] = ind3;
indices[3] = ind4;
indices[4] = ind5;
transform = 0;
flag = f;
}
// Cancelled and added new version at the end of the file (2025 November)
// void Pentatope::GetVertices(Array<int> &v) const
// {
// v.SetSize(5);
// for (int i = 0; i < 5; i++)
// {
// v[i] = indices[i];
// }
// }
//
// void Pentatope::SetVertices(const int *ind)
// {
// for (int i = 0; i < 5; i++)
// {
// indices[i] = ind[i];
// }
// }
//static method
void Pentatope::GetPointMatrix(unsigned transform, DenseMatrix &pm) // FIXME for bisection
{
double* a = &pm(0,0), *b = &pm(0,1), *c = &pm(0,2), *d = &pm(0,3), *e = &pm(0,
4);
// initialize to identity
a[0] = 0.0, a[1] = 0.0, a[2] = 0.0, a[3] = 0.0;
b[0] = 1.0, b[1] = 0.0, b[2] = 0.0, b[3] = 0.0;
c[0] = 0.0, c[1] = 1.0, c[2] = 0.0, c[3] = 0.0;
d[0] = 0.0, d[1] = 0.0, d[2] = 1.0, d[3] = 0.0;
e[0] = 0.0, e[1] = 0.0, e[2] = 0.0, e[3] = 1.0;
int chain[12], n = 0;
bool swapped[12];
while (transform)
{
chain[n++] = (transform & 15) - 1;
swapped[n-1] = ( (transform & 31) / 16 == 1);
transform >>= 5;
}
#define ASGN(a, b) (a[0] = b[0], a[1] = b[1], a[2] = b[2], a[3] = b[3])
#define SWAP(a, b) for (int i = 0; i < 4; i++) { std::swap(a[i], b[i]); }
#define AVG(a, b, c) for (int i = 0; i < 4; i++) { a[i] = (b[i]+c[i])*0.5; }
double f[4];
while (n)
{
switch (chain[--n])
{
case 0:
if (swapped[n]) SWAP(a,e);
AVG(f,a,e); ASGN(e,d); ASGN(d,c); ASGN(c,b); ASGN(b,f);
if (!swapped[n]) SWAP(a,e);
break; // chilTesseractd 1, tag 0 parent
case 1:
if (swapped[n]) SWAP(a,e);
AVG(f,a,e); ASGN(e,d); ASGN(d,c); ASGN(c,b); ASGN(b,f);
if (!swapped[n]) SWAP(a,e);
break; // child 1, tag 1 parent
case 2:
if (swapped[n]) SWAP(a,e);
AVG(f,a,e); ASGN(e,d); ASGN(d,c); ASGN(c,b); ASGN(b,f);
if (!swapped[n]) SWAP(a,e);
break; // child 1, tag 2 parent
case 3:
if (swapped[n]) SWAP(a,e);
AVG(f,a,e); ASGN(e,d); ASGN(d,c); ASGN(c,b); ASGN(b,f);
if (!swapped[n]) SWAP(a,e);
break; // child 1, tag 3 parent
case 10:
if (swapped[n]) SWAP(a,e);
AVG(f,a,e); ASGN(a,e); ASGN(e,b); SWAP(c,d); ASGN(b,f);
if (!swapped[n]) SWAP(a,e);
break; // child 2, tag 0 parent
case 11:
if (swapped[n]) SWAP(a,e);
AVG(f,a,e); ASGN(a,e); ASGN(e,c); ASGN(c,b); ASGN(b,f);
if (!swapped[n]) SWAP(a,e);
break; // child 2, tag 1 parent
case 12:
if (swapped[n]) SWAP(a,e);
AVG(f,a,e); ASGN(a,e); ASGN(e,d); ASGN(d,c); ASGN(c,b); ASGN(b,f);
if (swapped[n]) SWAP(a,e);
break; // child 2, tag 2 parent
case 13:
if (swapped[n]) SWAP(a,e);
AVG(f,a,e); ASGN(a,e); ASGN(e,d); ASGN(d,c); ASGN(c,b); ASGN(b,f);
if (swapped[n]) SWAP(a,e);
break; // child 2, tag 3 parent
#if 0 // Freudenthal
case 0 : AVG(b,a,b); AVG(c,a,c); AVG(d,a,d); AVG(e,a,e); break; // 1,6,7,8,9
case 1 : AVG(a,a,b); AVG(c,b,c); AVG(d,b,d); AVG(e,b,e); break; // 6,2,10,11,12
case 2 : AVG(a,a,c); AVG(b,b,c); AVG(d,c,d); AVG(e,c,e); break; // 7,10,3,13,14
case 3 : AVG(a,a,d); AVG(b,b,d); AVG(c,c,d); AVG(e,d,e); break; // 8,11,13,4,15
case 4 : AVG(a,a,e); AVG(b,b,e); AVG(c,c,e); AVG(d,d,e); break; // 9,12,14,15,5
case 5 : ASGN(f,e); AVG(e,d,e); AVG(d,c,d); ASGN(g,b); AVG(c,b,c); AVG(b,a,f);
AVG(a,a,g); break; // 6,9,10,13,15
case 6 : ASGN(f,a); AVG(a,a,b); AVG(b,f,d); ASGN(g,c); AVG(c,f,e); AVG(e,d,e);
AVG(d,g,d); break; // 6,8,9,13,15
case 7 : ASGN(f,e); AVG(e,d,e); AVG(d,b,d); ASGN(g,c); AVG(c,b,c); AVG(b,a,f);
AVG(a,a,g); break; // 7,9,10,11,13
case 8 : ASGN(f,a); AVG(a,a,b); AVG(b,f,c); ASGN(g,e); AVG(e,c,d); AVG(c,f,d);
AVG(d,f,g); break; // 6,7,8,9,13
case 9 : ASGN(f,e); AVG(a,a,e); AVG(e,f,d); ASGN(g,c); AVG(b,b,c); AVG(c,c,d);
AVG(d,f,g); break; // 9,10,13,14,15
case 10: ASGN(f,a); AVG(a,a,b); AVG(c,b,c); ASGN(g,e); AVG(e,d,e); AVG(d,b,g);
AVG(b,f,g); break; // 6,9,10,12,15
case 11: ASGN(f,d); AVG(d,c,d); AVG(e,d,e); ASGN(g,a); AVG(a,a,b); AVG(c,b,f);
AVG(b,g,f); break; // 6,8,11,13,15
case 12: ASGN(f,b); AVG(a,a,b); AVG(b,b,c); ASGN(g,e); AVG(e,d,e); AVG(c,f,d);
AVG(d,f,g); break; // 6,10,11,12,15
case 13: ASGN(f,c); AVG(c,a,e); AVG(e,c,d); ASGN(g,a); AVG(a,a,b); AVG(d,b,f);
AVG(b,f,g); break; // 6,7,9,10,13
case 14: ASGN(f,b); AVG(b,b,c); AVG(a,a,e); ASGN(g,e); AVG(e,d,e); AVG(d,c,g);
AVG(c,f,g); break; // 9,10,12,14,15
case 15: ASGN(f,d); AVG(d,c,d); AVG(a,a,b); ASGN(g,b); AVG(b,b,c); AVG(e,f,e);
AVG(c,g,f); break; // 6,10,11,13,15
#endif
default:
MFEM_ABORT("Invalid transform.");
}
}
}
Element *Pentatope::Duplicate(Mesh *m) const
{
Pentatope *pent = new Pentatope;
pent->SetVertices(indices);
pent->SetAttribute(attribute);
pent->SetFlag(flag);
return pent;
}
int Pentatope::NeedRefinement(HashTable<Hashed2> &v_to_v) const
{
if (v_to_v.FindId(indices[0], indices[1]) != -1) { return 1; }
if (v_to_v.FindId(indices[1], indices[2]) != -1) { return 1; }
if (v_to_v.FindId(indices[2], indices[0]) != -1) { return 1; }
if (v_to_v.FindId(indices[0], indices[3]) != -1) { return 1; }
if (v_to_v.FindId(indices[1], indices[3]) != -1) { return 1; }
if (v_to_v.FindId(indices[2], indices[3]) != -1) { return 1; }
if (v_to_v.FindId(indices[0], indices[4]) != -1) { return 1; }
if (v_to_v.FindId(indices[1], indices[4]) != -1) { return 1; }
if (v_to_v.FindId(indices[2], indices[4]) != -1) { return 1; }
if (v_to_v.FindId(indices[4], indices[3]) != -1) { return 1; }
return 0;
}
void Pentatope::CreateFlag(char t, bool swap)
{
flag = t;
flag <<= 1;
flag |= swap;
}
void Pentatope::ParseFlag(char& t, bool& swap)
{
unsigned char f = flag;
swap = (f & 1);
f >>= 1;
t = (f & 3);
}
void Pentatope::GetFace(int fi, int *fv)
{
// const int faces[5][4] = { {0, 1, 2, 3}, {0, 1, 2, 4},
// {0, 1, 3, 4}, {0, 2, 3, 4},
// {1, 2, 3, 4}};
const int *v = geom_p::FaceVert[fi];
for (int k = 0; k < 4; ++k)
{
fv[k] = indices[v[k]];
}
// if (fi % 2 == 1)
// std::swap(fv[1], fv[2]);
}
void Pentatope::GetVertices(Array<int> &v) const
{
v.SetSize(5);
std::copy(indices, indices + 5, v.begin());
}
void Pentatope::SetVertices(const Array<int> &v)
{
MFEM_ASSERT(v.Size() == 5, "!");
std::copy(v.begin(), v.end(), indices);
}
void Pentatope::SetVertices(const int *ind)
{
std::copy(ind, ind + 5, indices);
}
}
+144
View File
@@ -0,0 +1,144 @@
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
// reserved. See file COPYRIGHT for details.
//
// This file is part of the MFEM library. For more information and source code
// availability see http://mfem.googlecode.com.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the GNU Lesser General Public License (as published by the Free
// Software Foundation) version 2.1 dated February 1999.
#ifndef MFEM_PENTATOPE
#define MFEM_PENTATOPE
#include "../config/config.hpp"
#include "../fem/fe.hpp"
#include "element.hpp"
namespace mfem
{
/// Data type pentatope element
class Pentatope : public Element
{
protected:
int indices[5];
unsigned transform;
/* Flag holds currently
* One bit indicating if the element has been swapped.
* Two bits indicating the tag of the simplex (0, 1, 2, 3)
*/
unsigned char flag;
public:
typedef Geometry::Constants<Geometry::PENTATOPE> geom_p;
Pentatope() : Element(Geometry::PENTATOPE) { transform = 0; flag = 0;};
/// Constructs pentatope by specifying the indices and the attribute.
Pentatope(const int *ind, int attr = 1, unsigned char type = 0);
/// Constructs pentatope by specifying the indices and the attribute.
Pentatope(int ind1, int ind2, int ind3, int ind4, int ind5, int attr = 1, unsigned char type = 0);
virtual int GetRefinementFlag()
{ MFEM_ABORT("PENTATOPE:: GetRefinementFlag not implemented"); return 0; }
/// Return 1 if the element needs refinement in order to get conforming mesh.
virtual int NeedRefinement(HashTable<Hashed2> &v_to_v) const;
/// Mark the longest edge by assuming/changing the order of the vertices.
virtual void MarkEdge(DenseMatrix &pmat)
{ MFEM_ABORT("PENTATOPE:: MarkEdge not implemented"); }
/** Reorder the vertices so that the longest edge is from vertex 0
to vertex 1. If called it should be once from the mesh constructor,
because the order may be used later for setting the edges. **/
virtual void MarkEdge(const DSTable &v_to_v, const int *length)
{ MFEM_ABORT("PENTATOPE:: MarkEdge not implemented"); }
virtual void GetFace(int fi, int *fv);
/// Return element's type.
virtual Type GetType() const { return Element::PENTATOPE; }
virtual void CreateFlag(char t, bool swap);
virtual void ParseFlag(char &t, bool &swap);
virtual void SetFlag(const unsigned char t) { flag = t; }
/// Return flag of element.
virtual unsigned char GetFlag() const { return flag; }
// Cancelled and added new version at the end of the file (2025 November)
// /// Set the vertices according to the given input.
// virtual void SetVertices(const int *ind);
//
// /// Returns the indices of the element's vertices.
// virtual void GetVertices(Array<int> &v) const;
//
// virtual int *GetVertices() { return indices; }
virtual int GetNVertices() const { return 5; }
virtual int GetNEdges() const { return 10; }
virtual int GetNPlanars() const { return 10; }
virtual const int *GetEdgeVertices(int ei) const { return (geom_p::Edges[ei]); }
virtual const int *GetPlanarsVertices(int pi) const { return (geom_p::PlanarVert[pi]); }
MFEM_DEPRECATED virtual int GetNFaces(int &nFaceVertices) const
{ nFaceVertices = 4; return 5; }
virtual int GetNFaces() const { return 5; };
virtual int GetNFaceVertices(int fi) const { return 4; };
virtual const int *GetFaceVertices(int fi) const
{ return geom_p::FaceVert[fi]; }
/// Calculate point matrix corresponding to a chain of transformations.
static void GetPointMatrix(unsigned transform, DenseMatrix &pm);
virtual void ResetTransform(int tr) { transform = tr; }
virtual unsigned GetTransform() const { return transform; }
virtual void PushTransform(int tr)
{ transform = (transform << 5) | (tr + 1); }
virtual Element *Duplicate(Mesh *m) const;
/// Get the indices defining the vertices.
void GetVertices(Array<int> &v) const override;
/// Set the indices defining the vertices.
void SetVertices(const Array<int> &v) override;
/// @note The returned array should NOT be deleted by the caller.
int * GetVertices () override { return indices; }
/// Set the indices defining the vertices.
void SetVertices(const int *ind) override;
virtual ~Pentatope() { }
};
extern MFEM_EXPORT Linear4DFiniteElement PentatopeFE;
}
#endif
+1729 -43
View File
File diff suppressed because it is too large Load Diff
+64 -1
View File
@@ -63,26 +63,48 @@ protected:
void Set(int v0, int v1, int v2, int v3)
{ v[0] = v0; v[1] = v1; v[2] = v2; v[3] = v3; }
void Set(const int *w)
{ v[0] = w[0]; v[1] = w[1]; v[2] = w[2]; v[3] = w[3]; }
{ v[0] = w[0]; v[1] = w[1]; v[2] = w[2]; v[3] = w[3];}
};
struct Vert4_tag
{
int v[4];
char tag;
Vert4_tag() = default;
Vert4_tag(int v0, int v1, int v2, int v3, char _tag = 0)
{
v[0] = v0; v[1] = v1; v[2] = v2; v[3] = v3; tag = _tag;
}
void Set(int v0, int v1, int v2, int v3, char _tag = 0)
{ v[0] = v0; v[1] = v1; v[2] = v2; v[3] = v3; tag = _tag; }
void Set(const int *w, char _tag = 0)
{ v[0] = w[0]; v[1] = w[1]; v[2] = w[2]; v[3] = w[3]; tag = _tag; }
};
Array<Element *> shared_edges;
// shared face id 'i' is:
// * triangle id 'i', if i < shared_trias.Size()
// * quad id 'i-shared_trias.Size()', otherwise
Array<Vert3> shared_trias;
Array<Vert4> shared_quads;
Array<Vert4_tag> shared_tetra;
// Array<Element *> shared_planars;
/// Shared objects in each group.
Table group_svert;
Table group_sedge;
Table group_stria; // contains shared triangle indices
Table group_squad; // contains shared quadrilateral indices
Table group_stetr;
// Table group_splan;
/// Shared to local index mapping.
Array<int> svert_lvert;
Array<int> sedge_ledge;
Array<int> splan_lplan;
// sface ids: all triangles first, then all quads
// in 4D, just all tetrahedra
Array<int> sface_lface;
/// Table that maps from face neighbor element number, to the face numbers of
@@ -122,6 +144,18 @@ protected:
bool DecodeFaceSplittings(HashTable<Hashed2> &v_to_v, const int *v,
const Array<unsigned> &codes, int &pos);
void GetFaceSplittings4D(const Vert4_tag &f, const HashTable<Hashed2> &v_to_v,
const DSTable &edges, Array<unsigned> &codes);
bool DecodeFaceSplittings4D(HashTable<Hashed2> &v_to_v, const Vert4_tag &v,
const Array<unsigned> &codes, int &pos);
void GetFaceSplittings4D_old(const Vert4_tag &f, const HashTable<Hashed2> &v_to_v,
Array<unsigned> &codes);
bool DecodeFaceSplittings4D_old(HashTable<Hashed2> &v_to_v, const Vert4_tag &v,
const Array<unsigned> &codes, int &pos);
// Given a completed FacesTable and SharedFacesTable, construct a table that
// maps from face neighbor element number, to the set of faces of that
// element. Store the resulting data in the member variable
@@ -166,6 +200,9 @@ protected:
/// Update the groups after tetrahedron refinement
void RefineGroups(int old_nv, const HashTable<Hashed2> &v_to_v);
void RefineGroups4D(int old_nv, const HashTable<Hashed2> &v_to_v);
void UniformRefineGroups4D_Freudenthal(int old_nv, const HashTable<Hashed2> &v_to_v);
void UniformRefineGroups2D(int old_nv);
// f2qf can be NULL if all faces are quads or there are no quad faces
@@ -226,6 +263,9 @@ protected:
Array<int>& face_group,
ListOfIntegerSets& groups);
int FindSharedPlanars(const Mesh &mesh, const int* partition,
Table* &plan_element, ListOfIntegerSets &groups);
int FindSharedEdges(const Mesh &mesh, const int* partition,
Table* &edge_element, ListOfIntegerSets& groups);
@@ -236,6 +276,13 @@ protected:
const Array<int>& face_group,
int &nstria, int &nsquad);
void BuildFaceGroup4D(int ngroups, const Mesh &mesh,
const Array<int>& face_group,
int &nstetr, int &nshexa);
void BuildPlanarGroup(int ngroups, const Mesh &mesh,const Table& plan_element,
int &nstria, int &nsquad);
void BuildEdgeGroup(int ngroups, const Table& edge_element);
void BuildVertexGroup(int ngroups, const Table& vert_element);
@@ -246,6 +293,17 @@ protected:
const Array<int> &face_group,
const Array<int> &vert_global_local);
void BuildSharedFaceElems4D(int ntet_faces, int nhex_faces,
const Mesh &mesh, int *partitioning,
const STable4D *faces_tbl_4d,
const Array<int> &face_group,
const Array<int> &vert_global_local,
const std::map<int,char> &vert_to_type);
void BuildSharedPlanarElems(int ntri_planars, int nquad_planars,
const Mesh &mesh, const Array<int>& vert_global_local,
const STable3D *planar_tbl, const Table* plan_element);
void BuildSharedEdgeElems(int nedges, Mesh &mesh,
const Array<int> &vert_global_local,
const Table *edge_element);
@@ -447,12 +505,17 @@ public:
int GroupNEdges(int group) const { return group_sedge.RowSize(group-1); }
int GroupNTriangles(int group) const { return group_stria.RowSize(group-1); }
int GroupNQuadrilaterals(int group) const { return group_squad.RowSize(group-1); }
// int GroupNPlanars(int group) const { return group_splan.RowSize(group-1); }
int GroupNTetrahedra(int group) const { return group_stetr.RowSize(group-1); }
int GroupVertex(int group, int i) const
{ return svert_lvert[group_svert.GetRow(group-1)[i]]; }
void GroupEdge(int group, int i, int &edge, int &o) const;
void GroupTriangle(int group, int i, int &face, int &o) const;
void GroupQuadrilateral(int group, int i, int &face, int &o) const;
void GroupTetrahedron(int group, int i, int &face, int &o) const;
///@}
/**
+116
View File
@@ -0,0 +1,116 @@
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
// reserved. See file COPYRIGHT for details.
//
// This file is part of the MFEM library. For more information and source code
// availability see http://mfem.googlecode.com.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the GNU Lesser General Public License (as published by the Free
// Software Foundation) version 2.1 dated February 1999.
#include "mesh_headers.hpp"
namespace mfem
{
const int Tesseract::edges[32][2] =
{
{0, 1}, {1, 2}, {3, 2}, {0, 3},
{4, 5}, {5, 6}, {7, 6}, {4, 7},
{0, 4}, {1, 5}, {2, 6}, {3, 7},
{8, 9}, {9, 10}, {11, 10}, {8, 11},
{12, 13}, {13, 14}, {15, 14}, {12, 15},
{8, 12}, {9, 13}, {10, 14}, {11, 15},
{0, 8}, {1, 9}, {2, 10}, {3, 11},
{4, 12}, {5, 13}, {6, 14}, {7, 15}
};
// same as Mesh::hex_faces
const int Tesseract::faces[8][8] =
{
// {8,11,12,15,0,3,4,7}, //x bottom
// {1,2,6,5,9,10,14,13}, //x top
// {0,1,5,4,8,9,13,12}, //y bottom
// {2,3,7,6,10,11,15,14}, //y top
// {8,9,10,11,0,1,2,3}, // z bottom
// {4,5,6,7,12,13,14,15}, //z top
// {0,1,2,3,4,5,6,7}, //t botom
// {12,13,14,15,8,9,10,11} //t top
{8,11,15,12,0,3,7,4}, //x bottom
{1,2,6,5,9,10,14,13}, //x top
{0,1,5,4,8,9,13,12}, //y bottom
{2,3,7,6,10,11,15,14}, //y top
{8,9,10,11,0,1,2,3}, // z bottom
{4,5,6,7,12,13,14,15}, //z top
{0,1,2,3,4,5,6,7}, //t botom
{12,13,14,15,8,9,10,11} //t top
};
Tesseract::Tesseract(const int *ind, int attr)
: Element(Geometry::TESSERACT)
{
attribute = attr;
for (int i = 0; i < 16; i++)
{
indices[i] = ind[i];
}
}
Tesseract::Tesseract(int ind1, int ind2, int ind3, int ind4,
int ind5, int ind6, int ind7, int ind8,
int ind9, int ind10, int ind11, int ind12,
int ind13, int ind14, int ind15, int ind16,
int attr) : Element(Geometry::TESSERACT)
{
attribute = attr;
indices[0] = ind1;
indices[1] = ind2;
indices[2] = ind3;
indices[3] = ind4;
indices[4] = ind5;
indices[5] = ind6;
indices[6] = ind7;
indices[7] = ind8;
indices[8] = ind9;
indices[9] = ind10;
indices[10] = ind11;
indices[11] = ind12;
indices[12] = ind13;
indices[13] = ind14;
indices[14] = ind15;
indices[15] = ind16;
}
// Cancelled and added new version at the end of the file (2025 November)
/*void Tesseract::GetVertices(Array<int> &v) const
{
v.SetSize(16);
for (int i = 0; i < 16; i++)
{
v[i] = indices[i];
}
}*/
void Tesseract::GetVertices(Array<int> &v) const
{
v.SetSize(16);
std::copy(indices, indices + 16, v.begin());
}
void Tesseract::SetVertices(const Array<int> &v)
{
MFEM_ASSERT(v.Size() == 16, "!");
std::copy(v.begin(), v.end(), indices);
}
void Tesseract::SetVertices(const int *ind)
{
std::copy(ind, ind + 16, indices);
}
QuadLinear4DFiniteElement TesseractFE;
}
+90
View File
@@ -0,0 +1,90 @@
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
// reserved. See file COPYRIGHT for details.
//
// This file is part of the MFEM library. For more information and source code
// availability see http://mfem.googlecode.com.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the GNU Lesser General Public License (as published by the Free
// Software Foundation) version 2.1 dated February 1999.
#ifndef MFEM_TESSERACT
#define MFEM_TESSERACT
#include "../config/config.hpp"
#include "element.hpp"
namespace mfem
{
/// Data type tesseract element
class Tesseract : public Element
{
protected:
int indices[16];
public:
static const int edges[32][2];
static const int faces[8][8]; // same as Mesh::tes_faces
Tesseract() : Element(Geometry::TESSERACT) { }
/// Constructs hexahedron by specifying the indices and the attribute.
Tesseract(const int *ind, int attr = 1);
/// Constructs hexahedron by specifying the indices and the attribute.
Tesseract(int ind1, int ind2, int ind3, int ind4,
int ind5, int ind6, int ind7, int ind8,
int ind9, int ind10, int ind11, int ind12,
int ind13, int ind14, int ind15, int ind16, int attr = 1);
/// Return element's type
Type GetType() const { return Element::TESSERACT; }
// Cancelled and added new version at the end of the file (2025 November)
// /// Returns the indices of the element's vertices.
// virtual void GetVertices(Array<int> &v) const;
//
// virtual int *GetVertices() { return indices; }
virtual int GetNVertices() const { return 16; }
virtual int GetNEdges() const { return 32; }
virtual int GetNFaces() const { return 8; }
virtual int GetNFaceVertices(int fi) const { return 8; }
virtual const int *GetEdgeVertices(int ei) const
{ return edges[ei]; }
virtual int GetNFaces(int &nFaceVertices) const
{ nFaceVertices = 8; return 8; }
virtual const int *GetFaceVertices(int fi) const
{ return faces[fi]; }
virtual Element *Duplicate(Mesh *m) const
{ return new Tesseract(indices, attribute); }
/// Get the indices defining the vertices.
void GetVertices(Array<int> &v) const override;
/// Set the indices defining the vertices.
void SetVertices(const Array<int> &v) override;
/// @note The returned array should NOT be deleted by the caller.
int * GetVertices () override { return indices; }
/// Set the indices defining the vertices.
void SetVertices(const int *ind) override;
virtual ~Tesseract() { }
};
extern QuadLinear4DFiniteElement TesseractFE;
}
#endif
+7 -6
View File
@@ -22,17 +22,18 @@ namespace mfem
class Vertex
{
protected:
real_t coord[3];
real_t coord[4];
public:
Vertex() = default;
// Trivial copy constructor and trivial copy assignment operator
Vertex(real_t *xx, int dim);
Vertex(real_t x, real_t y) { coord[0] = x; coord[1] = y; coord[2] = 0.; }
Vertex(real_t x, real_t y) { coord[0] = x; coord[1] = y; coord[2] = 0.; coord[3] = 0.;}
Vertex(real_t x, real_t y, real_t z)
{ coord[0] = x; coord[1] = y; coord[2] = z; }
{ coord[0] = x; coord[1] = y; coord[2] = z; coord[3] = 0.;}
Vertex(real_t x, real_t y, real_t z, real_t t)
{ coord[0] = x; coord[1] = y; coord[2] = z; coord[3] = t;}
/// Returns pointer to the coordinates of the vertex.
inline real_t * operator() () const { return (real_t*)coord; }
@@ -45,8 +46,8 @@ public:
/// (DEPRECATED) Set the coordinates of the Vertex.
/** @deprecated This old version of SetCoords is not always memory safe. */
MFEM_DEPRECATED void SetCoords(const real_t *p)
{ coord[0] = p[0]; coord[1] = p[1]; coord[2] = p[2]; }
MFEM_DEPRECATED void SetCoords(const double *p)
{ coord[0] = p[0]; coord[1] = p[1]; coord[2] = p[2]; coord[3] = p[3]; }
/// Sets vertex location based on given point p
void SetCoords(int dim, const real_t *p)
+43
View File
@@ -163,6 +163,13 @@ double poly3d(const IntegrationPoint &ip, int l, int m, int n)
// l!m!n!/(p+3)! = 1/binom(p,l+m)/binom(l+m,l)/(p+1)/(p+2)/(p+3)
}
double poly4d(const IntegrationPoint &ip, int l, int m, int n, int o)
{
return pow(ip.x, l)*pow(ip.y, m)*pow(ip.z, n)*pow(ip.t, o);
// exact integral over the reference pentatope is (with p = l+m+n+o)
// l!m!n!o!/(p+4)! = 1/binom(p,l)/binom(p-l,m)/binom(n+o,o)/(p+1)/(p+2)/(p+3)/(p+4)
}
TEST_CASE("Simplex integration rules", "[SimplexRules]")
{
// This code is automatically re-executed for all of the sections.
@@ -243,4 +250,40 @@ TEST_CASE("Simplex integration rules", "[SimplexRules]")
}
}
}
SECTION("low pent integration error on reference element for f=x^l y^m z^n t^o, where l+m+n+o <= p")
{
for (int order = 0; order <= 10; order++)
{
const IntegrationRule &ir = IntRules.Get(Geometry::PENTATOPE, order);
for (int p = 0; p <= order; p++)
{
for (int l = p; l >= 0; l--)
{
for (int m = p - l; m >= 0; m--)
{
for (int n = p - l - m; n >= 0; n--)
{
int o = p - l - m - n;
double integral = 0.0;
for (int i = 0; i < ir.GetNPoints(); i++)
{
const IntegrationPoint &ip = ir.IntPoint(i);
integral += ip.weight*poly4d(ip, l, m, n, o);
}
double exact = 1.0/binom[p][l]/binom[p-l][m]/binom[n+o][o]/(p+1)/(p+2)/(p+3)/(p+4);
double relerr = 1. - integral/exact;
//If a test fails any INFO statements preceding the REQUIRE are displayed
INFO("p=" << p << ", l=" << l << ", m=" << m << ", n=" << n << ", o=" << o);
REQUIRE(fabs(relerr) < 1e-11);
}
}
}
}
}
}
}