Compare commits

..
Author SHA1 Message Date
Socratis Petrides 6744b7f895 fix path issue 2022-08-16 14:30:09 -07:00
psocratis 51d1876427 Merge branch 'dpg-complex-dev' of github.com:mfem/mfem into dpg-complex-dev 2022-08-15 17:12:29 -07:00
psocratis cf18624920 small print edits 2022-08-15 17:12:11 -07:00
Socratis Petrides ac5d8d5993 merge master 2022-08-15 16:27:04 -07:00
Tzanio Kolev fcf50aae53 Merge pull request #3122 from mfem/minres-device
UseDevice in MINRESSolver
2022-08-08 08:27:11 -07:00
Tzanio Kolev e2636e7492 Merge pull request #3123 from mfem/minor-fixes
Minor PA and solver fixes
2022-08-05 08:16:49 -07:00
Veselin Dobrev d70bf954ae Merge pull request #3035 from mfem/pmesh-to-serial-mesh
Save a ParMesh as a serial mesh
2022-08-02 11:40:22 -07:00
Veselin Dobrev 74ea5db428 Merge pull request #3089 from mfem/pmesh-setnodalspace
Set Nodes correctly for ParMesh with ParFESpace using SetNodalFESpace
2022-08-02 11:39:32 -07:00
Tzanio Kolev 6f780be8b6 Merge pull request #3052 from mfem/artv3/hypre-opt/ParCSRMatrixLocalTranspose
Support hypre_ParCSRMatrixLocalTranspose
2022-08-02 11:27:44 -07:00
Will Pazner af81ad2656 Merge pull request #3061 from mfem/artv3/hypre/add-lcublas
add cublas flag for hypre
2022-08-02 09:58:00 -07:00
Will Pazner 9ef3e3533a Minor CGSolver::Mult output fixes 2022-07-30 12:35:17 -07:00
Will Pazner e4d4a84ac8 Use UsesTensorBasis in check LinearForm::SupportsDevice 2022-07-30 12:35:17 -07:00
Will Pazner dbdb234d1d Fix host access of GeometricFactors 2022-07-30 12:35:17 -07:00
Will Pazner 457d39c643 UseDevice in MINRESSolver 2022-07-30 10:36:04 -07:00
Tzanio Kolev b3a37687a0 Merge pull request #3023 from mfem/yohann/explicit-cast-mandel
Add an explicit cast to avoid implicit cast warning.
2022-07-29 07:56:28 -07:00
Tzanio Kolev be0c57cc73 Merge pull request #2953 from mfem/yohann/mixed-mesh
Add support for mixed meshes using libCEED.
2022-07-28 16:32:08 -07:00
Veselin Dobrev 351a5a00f7 Update some comments 2022-07-27 16:31:22 -07:00
Veselin Dobrev 9592ee5ab6 Fix the HYPRE version where hypre_ParCSRMatrixLocalTranspose() was
introduced.

Add a method HypreParMatrix::EnsureMultTranspose() that calls
hypre_ParCSRMatrixLocalTranspose() when HYPRE is built for GPUs.

Use HypreParMatrix::EnsureMultTranspose() in the implementation of
class ParFiniteElementSpace when constructing the parallel
prolongation operator as a HypreParMatrix.
2022-07-27 16:16:44 -07:00
Tzanio Kolev d2764aa218 Update miniapps/electromagnetics/maxwell.cpp 2022-07-27 09:11:45 -07:00
psocratis 5f38694913 several edits for comparison with DST runs 2022-07-27 06:51:45 -07:00
psocratis 967a024dbe setting up the dpg pml proble for comparison with DST 2022-07-27 01:45:43 -07:00
Yohann Dudouit 5e235154a5 Revert "Temporarily disable 2D parallel mixed mesg runs until #2953 is fixed"
This reverts commit e3775d570f.
2022-07-26 16:33:16 -07:00
Yohann Dudouit 6979e3ae40 Fix UsesTensorBasis to return false on mixed meshes.
- Thanks @mlstowell !
2022-07-26 16:17:49 -07:00
Veselin Dobrev f2f489a36e Updated ParMesh::GetSerialMesh() with some overflow checks and
some small tweaks.

Replace some uses of 'long' with 'long long' to better support
Win64 builds where 'long' is 32-bit and 'long long' is 64-bit.
On Linux and MacOS, both types are typically 64-bit.

Updated various "MemoryUsage" methods to return 'std::size_t'
instead of 'long' since the latter is 32-bit in Win64 builds.

Updated CHANGELOG.
2022-07-26 16:09:12 -07:00
Tzanio Kolev e3775d570f Temporarily disable 2D parallel mixed mesg runs until #2953 is fixed 2022-07-26 12:52:14 -07:00
Tzanio Kolev a4acfbb6bd Fixed a bug 2022-07-26 12:46:38 -07:00
Will Pazner 9c2d3f81d0 Merge remote-tracking branch 'origin/master' into artv3/hypre/add-lcublas
# Conflicts:
#	CMakeLists.txt
2022-07-26 11:52:40 -07:00
Veselin Dobrev 3ef72174c8 Merge branch 'master' into pmesh-to-serial-mesh 2022-07-26 10:12:27 -07:00
psocratis c8242b8e98 added pml terms to adjoint graph norm 2022-07-26 17:49:23 +03:00
psocratis c91875c5a9 fix pml coeff bug in uu_dpg maxwell 2022-07-25 17:08:10 +03:00
psocratis 94112d7a7a debugging uw pml maxwell 2022-07-25 15:33:57 +03:00
psocratis c275856ced dpg pml maxwell formulation 2022-07-25 13:14:51 +03:00
Tzanio Kolev 670b7b1ae3 Merge pull request #3000 from mfem/tmop-metrics
Mesh Untangling and worst case quality improvement metrics (TMOP)
2022-07-24 14:32:09 -07:00
psocratis ad58472eb5 acoustics preconditioner edits 2022-07-22 13:00:46 +03:00
psocratis 041ffbd32f format print 2022-07-21 06:39:30 -07:00
psocratis 72683f55ca minor-sample run edit 2022-07-21 02:04:38 -07:00
Tzanio Kolev 2c061c0366 Merge branch 'master' into artv3/hypre-opt/ParCSRMatrixLocalTranspose 2022-07-15 07:39:42 -07:00
Tzanio Kolev 154073caf3 Merge branch 'master' into tmop-metrics 2022-07-15 07:38:46 -07:00
Tzanio Kolev baa438344f Merge branch 'master' into yohann/mixed-mesh 2022-07-15 07:38:14 -07:00
Tzanio Kolev b77b608d21 Merge pull request #3106 from mfem/vcpkg-patch-metis
Use mfem/tpls for vcpkg Metis
2022-07-14 12:46:11 -07:00
Tzanio Kolev 40af7f79ad Update fem/tmop_tools.cpp 2022-07-13 18:29:43 -07:00
Tzanio Kolev 6ec94abe05 Update fem/tmop.hpp 2022-07-13 18:29:36 -07:00
Vladimir Z Tomov 7bfe22ad28 Verified valid input barrier metric. 2022-07-13 17:39:54 -07:00
Vladimir Z Tomov 855d610ba1 Aborted the worst-quality for now, as there are open questions. 2022-07-13 17:26:56 -07:00
Vladimir Z Tomov e29260f2df Removed unnecessary func calls. 2022-07-13 17:07:24 -07:00
Will Pazner 3f0fe1b4eb Use mfem/tpls for vcpkg Metis
Patch the vcpkg portfile for Metis used in GitHub Actions on Windows
to download the metis archive from mfem/tpls rather than the official
Metis server.
2022-07-13 13:47:31 -07:00
Yohann Dudouit dfd3bbe1b4 Remove explicit delete of CeedElemRestriction.
- Double free was creating issues.
2022-07-13 13:32:50 -07:00
Tzanio Kolev e81c4b86c3 Update linalg/hypre_parcsr.cpp 2022-07-13 12:16:58 -07:00
Tzanio Kolev 13543703bd Update linalg/hypre_parcsr.cpp 2022-07-13 12:16:41 -07:00
Tzanio Kolev 9bfaf169ed Update linalg/hypre_parcsr.cpp 2022-07-13 12:16:04 -07:00
Tzanio Kolev 6652c061d5 Merge pull request #3102 from mfem/tmop-da3-race-fix
Fix over-writing fmin race in fem/tmop/tmop_pa_da3.cpp [tmop-da3-race-fix]
2022-07-13 12:14:25 -07:00
Tzanio Kolev 65b0d86736 Merge pull request #3080 from mfem/vector-fe-div-mt-integral
Support map type INTEGRAL in PA VectorFEDivergenceIntegrator
2022-07-13 12:14:04 -07:00
Ketan Mittal bcc694aa41 merge conflict in CHANGELOG 2022-07-12 16:15:51 -07:00
Ketan Mittal 4884063dab reviewer comments 2022-07-12 16:15:02 -07:00
Arturo VargasandTzanio Kolev d4d002aca7 Update linalg/hypre_parcsr.cpp
Co-authored-by: Tzanio Kolev <tzanio@llnl.gov>
2022-07-12 13:51:13 -07:00
Will Pazner 773ea0cc5d Merge pull request #3056 from mfem/yohann/fa-form-system
Full Assembly BC elimination and HypreParMatrix
2022-07-12 10:32:42 -07:00
Tzanio Kolev e9acd4c084 Small fixed + organized CHANGELOG 2022-07-12 08:36:57 -07:00
Tzanio Kolev 9dc2495906 Merge branch 'master' into yohann/mixed-mesh 2022-07-12 08:09:50 -07:00
Ketan Mittal 8692b9ab56 add MPI_Barrier;useful for large meshes 2022-07-11 13:03:40 -07:00
Ketan Mittal 5dcf7e17d8 remove old commented out code 2022-07-11 11:52:28 -07:00
Ketan Mittal e69d5bd59c Merge branch 'master' of https://github.com/mfem/mfem into tmop-metrics 2022-07-11 11:49:44 -07:00
Ketan Mittal b02bfbc799 documentation 2022-07-11 11:49:24 -07:00
Ketan Mittal edbe8ee14b update miniapps 2022-07-11 11:37:50 -07:00
Tzanio Kolev 2a033c3298 Update test_pa_coeff.cpp 2022-07-11 11:30:29 -07:00
Tzanio Kolev 3d7b3b18fb Merge pull request #3012 from researchapps/add/multistage-build
adding multistage-build for slimmer container
2022-07-10 16:44:38 -07:00
Ketan Mittal 47fe9738ec combine untangling and worst case metrics into 1 2022-07-08 16:04:20 -07:00
camierjs 69e9674c06 Fix over-writing fmin race in fem/tmop/tmop_pa_da3.cpp 2022-07-08 09:48:23 -07:00
vsoch 972e13a595 remove PR trigger
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2022-07-07 12:44:48 -06:00
Tzanio Kolev 2208fc9aa8 Merge pull request #3077 from mfem/dlf-map-type
Support map type INTEGRAL in device DomainLFIntegrator
2022-07-07 10:17:19 -07:00
Tzanio Kolev e6c39635c9 Merge pull request #3068 from mfem/smem-hdiv-mass
Optimized shared memory H(div) mass kernels
2022-07-05 12:41:32 -07:00
Tzanio Kolev 5fa59a2f66 Merge pull request #2814 from mfem/enzyme-nonlinear
Nonlinear elasticity example with PA and AD
2022-07-05 12:41:04 -07:00
Tzanio Kolev 8b41d1dd05 Merge pull request #2760 from mfem/ortho-solver
Move OrthoSolver to solvers.hpp/cpp
2022-07-05 12:40:00 -07:00
Veselin Dobrev e7485db5eb Suppress a warning from the Intel compiler in the Hooke miniapp 2022-07-01 17:20:49 -07:00
Veselin Dobrev 4614a69b51 Fix the out-of-source GNU make build in miniapps/hooke 2022-06-29 17:01:37 -07:00
Yohann Dudouit c11576a686 Addressing review feedback from @acfisher. 2022-06-28 15:48:38 -07:00
Veselin Dobrev c93c185315 Building and testing tweaks for miniapps/hooke. 2022-06-28 00:02:52 -07:00
Veselin Dobrev fe55085199 Small additions 2022-06-27 20:16:39 -07:00
Veselin Dobrev 9f13caf64e Small tweaks 2022-06-27 19:57:58 -07:00
Veselin Dobrev fc1a8776ba Merge pull request #3078 from mfem/disable-docker-ci-forks
Disable Build Deploy Container workflow in forks
2022-06-27 16:11:02 -07:00
Veselin Dobrev 01f981d705 Revert no longer needed changes in device.cpp 2022-06-27 16:03:56 -07:00
Yohann Dudouit c225923cce Remove check for GPUHypre + debug. 2022-06-27 15:26:33 -07:00
Yohann Dudouit 8f90dc5c03 Try fixing CI issues. 2022-06-24 12:27:15 -07:00
Tzanio Kolev a46cf91039 Fixed additional instances of implicit type conversion 2022-06-24 09:43:50 -07:00
Arturo Vargas 0aaf837463 add version guards 2022-06-24 08:56:50 -07:00
Arturo Vargas ef53cb55fd Merge branch 'master' into artv3/hypre-opt/ParCSRMatrixLocalTranspose 2022-06-24 08:46:13 -07:00
Veselin Dobrev 9de9bdaa64 Fix a warning in class OrthoSolver in the serial build. 2022-06-23 16:49:50 -07:00
Veselin Dobrev 2bb7d8fe72 Some tweaks and documentation in class OrthoSolver. 2022-06-23 16:33:25 -07:00
Ketan Mittal 0d6809927f minor 2022-06-23 15:27:17 -07:00
Ketan Mittal 023d6e3276 add override 2022-06-23 14:52:43 -07:00
Veselin Dobrev 3dd5cbbe07 Merge pull request #2934 from mfem/artv3/umpire-mem-for-face-geo-facts
Add umpire pools to face geometric factor memory
2022-06-23 12:40:15 -07:00
Ketan Mittal cdc8c9634f add method for setting nodal FESpace in par meshes 2022-06-23 10:03:55 -07:00
Julian Andrej 94578246c6 terrible style application 2022-06-22 13:55:23 -07:00
Julian Andrej 66849d50a8 a little more refined type deduction 2022-06-22 13:53:41 -07:00
Julian Andrej a3dc3fa717 working in comments from reviews 2022-06-22 09:41:17 -07:00
Julian Andrej 33fc6fa644 add a unit test 2022-06-22 09:16:00 -07:00
Yohann Dudouit c0fbb01a73 Remove InitTensorRestriction. 2022-06-21 13:15:59 -07:00
Yohann Dudouit a3429fa4ab Add mixed meshes sample runs with libCEED in ex1 and ex1p. 2022-06-21 12:14:29 -07:00
Will Pazner 1b812b4a36 Support map type INTEGRAL in PA VectorFEDivergenceIntegrator 2022-06-17 19:11:18 -07:00
Will Pazner 96af414790 Disable Build Deploy Container workflow in forks 2022-06-17 11:06:24 -07:00
Tzanio Kolev e327e111ad Merge pull request #3024 from mfem/quiet-unit-tests
Quieter unit tests
2022-06-17 08:15:03 -07:00
Tzanio Kolev 413fb4e44b Merge pull request #3044 from mfem/extend-ex33
Extend `ex33` to arbitrary fractional exponents
2022-06-17 08:14:17 -07:00
Julian Andrej 7e44926d03 more msvc nonsense 2022-06-17 07:56:37 -07:00
Julian Andrej e5f2c551bf Merge branch 'master' of github.com:mfem/mfem into enzyme-nonlinear 2022-06-17 07:55:49 -07:00
Will Pazner c251fa7d78 Support general coefficients in shared memory H(div) mass kernels 2022-06-16 16:43:51 -07:00
Will Pazner 9495bf51dd Merge remote-tracking branch 'origin/hdivpa' into smem-hdiv-mass
# Conflicts:
#	fem/bilininteg_vectorfe.cpp
2022-06-16 16:43:33 -07:00
Tzanio Kolev 29b8f10fdb Merge pull request #3064 from mfem/delete-vector-operators
Explicitly delete some Vector operator overloads
2022-06-16 16:26:54 -07:00
Tzanio Kolev ef98bba35c Merge pull request #3041 from mfem/facequadinterp-smem-eval3d
Shared Memory FaceQuadratureInterpolator::Eval3D
2022-06-16 16:24:52 -07:00
Will Pazner 295d5a0ac9 Support map type INTEGRAL in device DomainLFIntegrator 2022-06-16 12:18:37 -07:00
Yohann Dudouit b81fa9f479 Rename TestSameMatrices to CompareMatricesNonZeros. 2022-06-16 09:49:54 -07:00
Yohann Dudouit c81506c238 Use random values instead of constant values. 2022-06-16 09:24:58 -07:00
Arturo Vargas a2c73fab47 move declaration of m_d_mt before Fnodes 2022-06-16 09:23:56 -07:00
YohannandDylan Copeland 9332beb87a Update linalg/operator.hpp
Co-authored-by: Dylan Copeland <dylancopeland@gmail.com>
2022-06-16 09:13:02 -07:00
Will Pazner 6d5403daab Remove unnecessary declarations 2022-06-16 09:06:10 -07:00
Dylan Copeland 1c7164a5b1 Adding more diagonal assembly tests and making the logic of the tests clearer. 2022-06-15 21:53:05 -05:00
Arturo Vargas 941262e9d3 use my_d_mt instead of d_mt in Fnodes 2022-06-15 18:54:38 -07:00
Will Pazner 5cfeb44ea2 Flatten tensors 2022-06-14 22:03:51 -07:00
Julian Andrej 513b4433b2 plz msvc 2022-06-14 17:25:41 -07:00
Yohann Dudouit 542bd7ecd8 Add note to EliminateRHS. 2022-06-14 17:24:51 -07:00
camierjs 2dd937d526 Reshape input vectors to D1D*(D1D-1)[(D1D-1)] 2022-06-14 16:14:53 -07:00
Julian Andrej c03554d7b0 remove restrict keyword 2022-06-14 15:34:05 -07:00
camierjs ddd5f51c29 Update SmemPAHdivMassApply kernels with tensors 2022-06-14 15:33:29 -07:00
Dylan CopelandandWill Pazner df8b66826b PR suggestion
Co-authored-by: Will Pazner <11493037+pazner@users.noreply.github.com>
2022-06-14 17:05:57 -05:00
Julian Andrej ea45cda9bb include to get CI working 2022-06-14 14:33:23 -07:00
Julian Andrej 2f198f7e2d cmake build 2022-06-14 13:42:53 -07:00
Yohann Dudouit 8a88a7c7a4 Improve ParallelRAP documentation. 2022-06-14 13:01:29 -07:00
Yohann Dudouit 7a9462b41e Add check for device debug and hypre using GPU. 2022-06-14 12:56:04 -07:00
Yohann Dudouit 0ba5fd7e8a Fix A_diag ownership. 2022-06-14 12:46:01 -07:00
Julian Andrej 065b5f9fde add to makefile build system 2022-06-14 12:08:33 -07:00
Julian Andrej f04fdefd1a rework enzyme inclusion 2022-06-14 11:55:27 -07:00
Yohann Dudouit 28c512a2b9 Let A own even if it should not... 2022-06-14 11:52:26 -07:00
Yohann Dudouit 841fe38186 Try something else... 2022-06-13 19:11:29 -07:00
Yohann Dudouit 63b969754f Ownership mon amour... 2022-06-13 18:49:41 -07:00
Yohann Dudouit 2b21ebc361 Fix the fix of the fix. 2022-06-13 18:33:55 -07:00
Yohann Dudouit b9afa1fe99 Fix the fix. 2022-06-13 18:17:51 -07:00
Yohann Dudouit 664dc801d3 Fix bug. 2022-06-13 17:07:34 -07:00
Yohann Dudouit 5275b4926d Move HypreStealOwnership in hypre.hpp/cpp. 2022-06-13 15:47:02 -07:00
Yohann Dudouit 91c73f9481 Update CHANGELOG. 2022-06-13 11:21:34 -07:00
Yohann Dudouit e19ef66f80 Avoid shadowing in SparseMatrix. 2022-06-13 11:15:55 -07:00
Yohann Dudouit 94e763c272 Update documentation about diagonal policy. 2022-06-13 11:10:18 -07:00
Yohann Dudouit b3128b0897 Remove unnecessary header. 2022-06-13 10:59:54 -07:00
Yohann Dudouit fb7fdecb9f Use moved methods. 2022-06-13 10:59:38 -07:00
Yohann Dudouit 6ed5dfd1e6 Move EliminateBC in HypreParMatrix. 2022-06-13 10:58:47 -07:00
Yohann Dudouit 45d5bd70e1 Move ElimnateBC in SparseMatrix. 2022-06-13 10:57:56 -07:00
camierjs 3b1a806bc0 Update test_calcshape to avoid duplicate tests and sync test numbers with master 2022-06-13 10:05:27 -07:00
Julian Andrej 67e0beb41d change name to hooke 2022-06-13 09:22:51 -07:00
camierjs ae2b918ff6 Merge master in quiet-unit-tests 2022-06-13 09:21:45 -07:00
Julian Andrej ed8e6fc20d Merge github.com:mfem/mfem into enzyme-nonlinear 2022-06-13 09:04:52 -07:00
Will Pazner be121033ed Optimize for QuadratureFunctionCoefficient in VectorFEMassIntegrator::AssemblePA 2022-06-12 12:53:04 -07:00
Will Pazner 2d7938ed3e Optimized shared memory H(div) mass kernels 2022-06-12 12:52:15 -07:00
Yohann Dudouit 28bdb1a235 Remove incorrect doc. 2022-06-10 16:19:28 -07:00
Arturo Vargas c78e984d69 add additional guards to avoidusing diagT 2022-06-10 16:03:08 -07:00
Tzanio Kolev 26a18096d3 Merge pull request #3054 from mfem/artv3/convection-trace-orders
Add additional orders to conv + trace
2022-06-10 15:30:50 -07:00
Arturo Vargas ab64e55247 add cublas find to cmake 2022-06-10 14:16:07 -07:00
Arturo Vargas aee9379f34 disable hypre_ParCSRMatrixBooleanMatvecT and make style 2022-06-10 13:31:27 -07:00
Yohann Dudouit 3e40a30e5d Add sample runs with "fa" in ex1 and ex1p. 2022-06-10 11:33:54 -07:00
Yohann Dudouit 24b66d11cc Update CHANGELOG. 2022-06-10 11:28:14 -07:00
Socratis Petrides f40aa8985b parallel example 1D,3D support 2022-06-10 11:27:07 -07:00
Socratis Petrides 0917cebd10 adding support for 1D, 3D and AMR mesh 2022-06-10 11:16:39 -07:00
Ketan Mittal 5ac499ff34 fix bug when saving on rank != 0 2022-06-10 10:50:58 -07:00
Socratis Petrides 38c60734b6 fix typo, increase maxit in CG and remove slow sample run 2022-06-10 10:37:38 -07:00
Ketan Mittal 7d40cb822c functionality to get the serial mesh object on one of the ranks 2022-06-10 10:19:59 -07:00
Yohann Dudouit 3ed49a8ccf Merge remote-tracking branch 'origin/master' into yohann/fa-form-system 2022-06-10 10:18:15 -07:00
Ketan Mittal d7fbcda0fa refactoring 2022-06-10 10:05:37 -07:00
Arturo Vargas 45ee759dd7 Merge branch 'master' into artv3/hypre-opt/ParCSRMatrixLocalTranspose 2022-06-09 16:13:28 -07:00
Tzanio Kolev 6fee4044ef Merge pull request #3047 from mfem/has-sp-mat-elim
Add HasSpMatElim
2022-06-09 10:20:52 -07:00
Tzanio Kolev c6d8097500 Merge pull request #3062 from mfem/newton-summary
Fix no convergence output in Newton solver
2022-06-09 10:20:40 -07:00
Julian Andrej b13e1afad0 update changelog 2022-06-08 17:13:34 -07:00
Julian Andrej 9de38b3f2e Merge branch 'enzyme-nonlinear' of github.com:mfem/mfem into enzyme-nonlinear 2022-06-08 17:12:25 -07:00
Julian Andrej 3f3398f6de add glvis viz 2022-06-08 17:07:27 -07:00
Julian Andrej 6287639acc capitalization 2022-06-08 17:04:41 -07:00
Julian Andrej 91e6559d36 correct gradient type name 2022-06-08 17:04:28 -07:00
Julian Andrej c6d1f20249 Merge github.com:mfem/mfem into enzyme-nonlinear 2022-06-08 17:02:28 -07:00
Julian AndrejandTzanio Kolev a3d2b38f31 Update miniapps/elasticity/kernels/kernel_helpers.hpp
Co-authored-by: Tzanio Kolev <tzanio@llnl.gov>
2022-06-08 17:01:37 -07:00
Julian AndrejandTzanio Kolev 4de70fd432 Update miniapps/elasticity/kernels/kernel_helpers.hpp
Co-authored-by: Tzanio Kolev <tzanio@llnl.gov>
2022-06-08 17:01:31 -07:00
Julian AndrejandTzanio Kolev 71c167805d Update config/defaults.mk
Co-authored-by: Tzanio Kolev <tzanio@llnl.gov>
2022-06-08 17:01:08 -07:00
Julian AndrejandTzanio Kolev 6ef17443a4 Update CHANGELOG
Co-authored-by: Tzanio Kolev <tzanio@llnl.gov>
2022-06-08 17:01:00 -07:00
Julian AndrejandTzanio Kolev 67300f588d Update CHANGELOG
Co-authored-by: Tzanio Kolev <tzanio@llnl.gov>
2022-06-08 17:00:47 -07:00
Tzanio Kolev 26f37ac152 Merge branch 'master' into enzyme-nonlinear 2022-06-08 12:44:47 -07:00
Tzanio Kolev 9fd2fe536d Merge pull request #3060 from mfem/cmake-target-include-dirs
Solves cmake include directory ordering issue
2022-06-08 12:44:13 -07:00
Tzanio Kolev 777e352a76 Merge branch 'master' into enzyme-nonlinear
Conflicts:
	makefile
2022-06-08 11:23:44 -07:00
Will Pazner 4ea8883b23 Delete Vector::operator- and operator+ 2022-06-07 12:14:19 -07:00
Julian Andrej 23a8ffe384 update error message 2022-06-07 12:06:51 -07:00
Julian Andrej 5d110683f6 add missing comments 2022-06-07 12:04:03 -07:00
Will Pazner 7b36ff88a1 Fix no convergence output in Newton solver 2022-06-06 17:33:33 -07:00
Yohann Dudouit 255302eae6 Add forall.hpp in hypre.hpp. 2022-06-06 16:46:55 -07:00
Yohann Dudouit 07f8b8f525 Include "hypre.hpp". 2022-06-06 16:44:15 -07:00
Yohann Dudouit baea0cf188 Fix doc. 2022-06-06 16:32:20 -07:00
Yohann Dudouit aefc9068e0 Minor. 2022-06-06 16:09:15 -07:00
Yohann Dudouit 52137ea095 Add documentation to FABilinearFormExtension::EliminateBC. 2022-06-06 16:07:33 -07:00
Yohann Dudouit e131e0f3a6 Rename SerialEliminateBC and ParallelEliminateBC in EliminateBC. 2022-06-06 16:07:05 -07:00
Will Pazner 33cdfdcd6e Minor Doxygen edits 2022-06-06 15:57:28 -07:00
Yohann Dudouit 21dc848651 Factorize code between bilinearform_ext and lor. 2022-06-06 15:54:18 -07:00
Tom Stitt 1df33bfceb doc fix 2022-06-06 15:45:47 -07:00
Tom Stitt 26cc3465e2 adds SpMat and improves docs 2022-06-06 15:43:25 -07:00
Tom StittandWill Pazner b4787f3fff Update fem/bilinearform.hpp
Co-authored-by: Will Pazner <11493037+pazner@users.noreply.github.com>
2022-06-06 15:24:45 -07:00
Yohann Dudouit 48f4efb5a5 Add a test for variable order using libCEED. 2022-06-06 14:09:26 -07:00
Yohann Dudouit 5218ea2649 Support variable polynomial order. 2022-06-06 14:08:56 -07:00
Arturo Vargas 976d64ff95 add cublas flag 2022-06-06 10:44:45 -07:00
camierjs cc86955b73 Solve cmake include directory ordering issue 2022-06-06 09:02:47 -07:00
Yohann Dudouit f4ce842065 Rename to prevent shadowing. 2022-06-03 13:08:12 -07:00
Yohann Dudouit ae27de9af2 Remove unused variable. 2022-06-03 12:20:56 -07:00
Yohann Dudouit 78cf39781d make style. 2022-06-02 17:09:44 -07:00
Will Pazner fdc0ed7cd7 Use GENERATE_COPY instead of GENERATE 2022-06-02 16:01:40 -07:00
Will Pazner 46a5b8cd81 Use verbose_tests global instead of hard-coded verbose or log flags 2022-06-02 15:34:34 -07:00
Will Pazner b2a7499cbf Add options to enable mfem::out test output and verbose mode
Also move global variable definitions to run_unit_tests.hpp to avoid duplication
in each test main cpp file.
2022-06-02 15:34:00 -07:00
Will Pazner 38d771af7c Use range in GENERATE 2022-06-02 15:33:00 -07:00
Yohann Dudouit 881d0be80a Merge remote-tracking branch 'origin/master' into yohann/mixed-mesh 2022-06-02 14:24:02 -07:00
Will Pazner 15de7d1352 Add unit tests README 2022-06-02 10:40:02 -07:00
Will Pazner b8b0645195 Use CAPTURE and INFO for unit test output 2022-06-01 16:34:20 -07:00
Vladimir Z Tomov 47b42e9f7d SetOperator -> SetSolver 2022-06-01 16:22:58 -07:00
Arturo Vargas b7bd26fe50 add additional orders 2022-06-01 14:58:37 -07:00
Will Pazner c3d2bdaf19 Include mfem::out and mfem::err output in unit tests only with -s flag 2022-06-01 14:51:15 -07:00
Ketan Mittal 8f328237ab remove shadow variable 2022-06-01 09:45:39 -07:00
Ketan Mittal 6872f7bee6 CHANGELOG 2022-06-01 08:52:34 -07:00
Ketan Mittal eed10fe35b remove unused variable 2022-05-31 13:56:59 -07:00
Ketan Mittal cdcc3339d6 fix computation of initial energy in miniapps 2022-05-31 13:42:45 -07:00
Ketan Mittal c911247ee3 Merge branch 'master' of https://github.com/mfem/mfem into tmop-metrics 2022-05-31 11:48:15 -07:00
Ketan Mittal bc546dc598 make worst case metric inherit from untangling metric 2022-05-31 11:48:03 -07:00
YohannandTzanio Kolev 3916f7dabf Update miniapps/toys/mandel.cpp
Co-authored-by: Tzanio Kolev <tzanio@llnl.gov>
2022-05-31 11:33:23 -07:00
Tobias Duswald e91c582d03 Apply changes from review
Co-authored-by:
brendankeith <keith10@llnl.gov>
Co-authored-by: psocratis <petrides1@llnl.gov>
2022-05-27 18:04:57 -07:00
Arturo Vargas d539dc6fb3 optimize At application 2022-05-27 17:38:44 -07:00
Ketan Mittal cb0d8a7af6 wordsmithing 2022-05-27 10:35:47 -07:00
Ketan Mittal e25eb36d29 Merge branch 'master' of https://github.com/mfem/mfem into tmop-metrics 2022-05-27 10:06:05 -07:00
Tobias Duswald 863638bb47 Make serial and parallel example identical 2022-05-26 17:36:05 -07:00
Tobias Duswald c9685df178 Update ex33p to new logic 2022-05-26 17:35:40 -07:00
Tom Stitt 0999fddcab Add HasSpMatElim to check if mat_e is null. Useful check before trying to use SpMatElim, which will fail if mat_e is null 2022-05-26 15:55:54 -07:00
Tom Stitt d1b4d38e5d revert non-specialized called
add more specializations
2022-05-26 14:18:53 -07:00
Julian Andrej 178ceeeaa3 rename methods 2022-05-26 10:30:47 -07:00
Julian Andrej d1cf744f06 clarify neohookean model restriction to 3D 2022-05-26 10:25:41 -07:00
Julian Andrej 4c7b9989d9 clarify symbolic comment 2022-05-26 10:24:54 -07:00
Tobias Duswald d59281d801 Astyle Format 2022-05-25 16:28:12 -07:00
Tobias Duswald 043b338fee Add explanation for computation of coefficients 2022-05-25 16:26:32 -07:00
Tobias Duswald 83074c4c0a Generalize ex33 to alpha > 0 2022-05-25 16:19:10 -07:00
Tom Stitt 9d204c8d81 rename based on pr comments 2022-05-25 12:16:06 -07:00
Tom StittandYohann e237f942e8 Apply suggestions from code review
Co-authored-by: Yohann <dudouit1@llnl.gov>
2022-05-25 12:12:39 -07:00
Ketan Mittal 32f4c4f88e documentation and fixed typo 2022-05-25 11:35:54 -07:00
Tom Stitt 185f63bdc5 add and use shared memory version of FaceQuadratureInterpolator::Eval3D to avoid large runtime allocations due to scratch memory usage 2022-05-24 19:20:21 -07:00
Ketan Mittal c9ddefd68a fix VLA issue 2022-05-24 11:22:34 -07:00
Ketan Mittal 0b7980091e minor 2022-05-24 10:48:00 -07:00
Yohann Dudouit 6bb1aaba5d Refactor RAP and EliminateBC in FABilinearFormExtension 2022-05-24 10:29:48 -07:00
Dylan Copeland 079f9cce33 Generalized diagonal assembly. 2022-05-23 19:42:09 -07:00
Dylan Copeland 244719c39c Generalized coefficient support for H(div) mass integrator, with unit tests. 2022-05-23 16:43:54 -07:00
Socratis Petrides 0de5f1f70b fichera 'oven' problem for maxwell 2022-05-20 18:40:09 -07:00
Will Pazner a1c905b6ee Remove unit test output 2022-05-19 14:54:21 -07:00
Socratis Petrides 18e7b9552c fix preconditioner 2022-05-19 14:12:18 -07:00
Yohann Dudouit fe300a678a Add an explicit cast to avoid warning. 2022-05-19 13:49:33 -07:00
Yohann Dudouit 54c1073f4c Minor simplification. 2022-05-19 12:21:01 -07:00
Ketan Mittal 78458fed0a minor 2022-05-19 11:13:20 -07:00
Ketan Mittal 8497117c61 Merge branch 'master' of https://github.com/mfem/mfem into pmesh-to-serial-mesh 2022-05-19 10:58:55 -07:00
Ketan Mittal d2753a59b0 clean up 2022-05-19 09:18:19 -07:00
Socratis Petrides ee5cc572ce adding parallel maxwell example and pcg solver 2022-05-18 18:07:36 -07:00
Ketan Mittal 6e16d5b7bf minor 2022-05-18 17:31:11 -07:00
Ketan Mittal f273e9b04f make style 2022-05-18 17:28:17 -07:00
Ketan Mittal cb731d4f1a working for surface meshes 2022-05-18 17:28:01 -07:00
Ketan Mittal 7d1b925438 initial commit 2022-05-18 16:10:50 -07:00
Socratis Petrides 1314d0b7d3 use ComplexCholeskyFactors for G 2022-05-18 15:34:11 -07:00
Socratis Petrides 95be3d9c12 resolve conflict with master 2022-05-18 15:33:24 -07:00
Socratis Petrides 3d6f1694b3 fix integration order in CurlIntegrator 2022-05-18 15:33:05 -07:00
Tzanio Kolev 6e82a1953b Merge branch 'master' into enzyme-nonlinear
Conflicts:
	tests/benchmarks/makefile
2022-05-18 14:05:21 -07:00
Socratis Petrides c454ddeb1c merge master 2022-05-18 12:23:35 -07:00
Yohann Dudouit eb0882ed94 Use device version of BC elimination. 2022-05-17 17:46:05 -07:00
Yohann Dudouit 0a051d9428 Add serial test. 2022-05-17 17:45:32 -07:00
Yohann Dudouit 4104e010d5 Add RAP and EliminateBC methods. 2022-05-17 16:55:29 -07:00
Arturo Vargas d9d01bdf5b enable the use of custom allocators for dg trace integrator 2022-05-17 16:13:36 -07:00
Yohann Dudouit beaaa373ee Merge remote-tracking branch 'origin/fa-hypre-par-matrix' into yohann/fa-form-system 2022-05-17 16:12:02 -07:00
Arturo Vargas 80f8a57a43 actually use my_d_mt in face geometric factors 2022-05-17 15:48:44 -07:00
Arturo Vargas c7df56044c Merge branch 'master' into artv3/umpire-mem-for-face-geo-facts 2022-05-17 15:44:22 -07:00
Arturo Vargas 4ffd22a8ec PR review comments 2022-05-17 15:43:50 -07:00
vsoch 65f3507406 add DEBIAN_FRONTEND=noninteractive
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2022-05-17 16:38:08 -06:00
Yohann Dudouit cd161542b3 Remove dead code. 2022-05-17 15:35:19 -07:00
Yohann Dudouit 17ef5ae043 FABilinearFormExtension::FormSystemMatrix and FABilinearFormExtension::FormLinearSystem finally working but give wrong results. 2022-05-17 15:33:08 -07:00
vsoch 654a070e12 fix build context to be config/docker
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2022-05-17 15:50:23 -06:00
vsoch 979954402b ensure pull request tests build
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2022-05-17 15:32:22 -06:00
vsoch bc5fbe767f adding multistage-build for slimmer container
I am currently running into an issue where when I shell inside my backspace turns
into a forward space, and I am hoping someone can reproduce to determine if there
is a bug we need to track down or if I am just a nut :)

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2022-05-16 15:20:26 -06:00
Yohann Dudouit 333e7dc512 Merge branch 'master' into yohann/fa-form-system 2022-05-16 13:53:50 -07:00
Socratis Petrides 878bfef86b minor fix in error calculation 2022-05-12 14:31:10 -07:00
Socratis Petrides bb0b0132b1 fixing graph norm in 2D 2022-05-12 12:28:50 -07:00
Ketan Mittal f04b6a467e computation of quantiles for untangler 2022-05-11 08:50:27 -07:00
Ketan Mittal f3fe49a07c computation of min det(T) and max mu(T) clean up 2022-05-10 13:42:41 -07:00
Ketan Mittal 7f1e9aca34 minor 2022-05-10 08:00:20 -07:00
Ketan Mittal 634519cc89 minor fix 2022-05-09 11:03:06 -07:00
Ketan Mittal 7d8877de64 sample runs for serial miniapp and minor fix 2022-05-09 11:00:41 -07:00
Ketan Mittal 7947c5f2de update to use new metrics 2022-05-09 10:57:56 -07:00
Ketan Mittal b58a6b599f calculate parameter for worst-case metric 2022-05-09 10:57:43 -07:00
Ketan Mittal 0b653bc3cd add shifted barrier and worst-case metric 2022-05-09 10:57:21 -07:00
Socratis Petrides 623fc516f0 merging 2D and 3D uw maxwell 2022-05-06 19:57:59 -07:00
Socratis Petrides 24e142b6b4 fixing BC for E in 2D maxwell 2022-05-06 19:57:32 -07:00
Socratis Petrides 4e75435e20 merging ScalarCurlintegrator to CurlIntegrator 2022-05-06 19:57:11 -07:00
Socratis Petrides 364bc0faa4 2D maxwell uw_dpg with essential BC on H 2022-05-05 20:10:27 -07:00
Socratis Petrides 03f1f5e252 fix sign bug in densmat::GradToCurl 2022-05-05 20:08:28 -07:00
Socratis Petrides 6b69120856 adding ScalarCurlIntegrator (rotated gradient) for scalar H1 2022-05-05 20:07:48 -07:00
Socratis Petrides e591dbe8b0 fix sign bug 2022-05-04 20:35:58 -07:00
Socratis Petrides edd4bae030 uw_maxwell for linear solution 2022-05-04 19:15:34 -07:00
Socratis Petrides 6ea11d6e65 testing new CurlIntegrator, starting UW_maxwell 2022-05-03 19:37:34 -07:00
Socratis Petrides 6e2d4bd6b8 varying options for acoustics 2022-05-03 19:36:28 -07:00
Socratis Petrides 6b40a55988 adding CurlIntegrator for H(curl) vs vector L2 2022-05-03 19:35:54 -07:00
Yohann Dudouit ecf3c10c08 Add support for FA in ex1 and ex1p. 2022-04-27 15:20:36 -07:00
Yohann Dudouit e3297d9e91 Attempt to implement FormLinearSystem and FormSystemMatrix. 2022-04-27 15:20:07 -07:00
Socratis Petrides 7931e85395 EM-diffusion in 2D with primal DPG merging 2D and 3D integrators to TangentTraceIntegrator 2022-04-22 17:45:43 -07:00
Socratis Petrides 1190685292 adding LS maxwell in 2D 2022-04-21 17:42:23 -07:00
Socratis Petrides b0828aa597 fixing VectorFETraceTangentIntegrator, Adding AssempleMatrix2 to CurlCurlIntegrator 2022-04-21 17:42:00 -07:00
Socratis Petrides caa6085362 primal dpg EM diffusion 2022-04-20 17:33:29 -07:00
Socratis Petrides cef5e71448 starting primal dpg EM-diffusion example 2022-04-20 16:05:38 -07:00
Socratis Petrides 078603885e adding tangential trace integrator 2022-04-20 16:03:05 -07:00
Socratis Petrides 8123a2e211 solving complex-acoustics with CG 2022-04-20 16:02:36 -07:00
Socratis Petrides 63e3496131 block preconditioner for indefinite helmholtz (complex case) 2022-04-15 19:23:13 -07:00
Socratis Petrides dddef6be52 testing with block diagonal preconditioner, real indefinite 2022-04-15 17:59:00 -07:00
Will Pazner 107b5c236e Compare RHS vectors in assembly level unit test 2022-04-14 16:39:24 -07:00
Yohann Dudouit 7f58074e97 Add documentation. 2022-04-06 17:30:36 -07:00
Yohann Dudouit 81178ac5fd Add destructor for MixedIntegrator. 2022-04-06 16:43:35 -07:00
Yohann Dudouit 021e39e537 Remove newline. 2022-04-06 16:32:30 -07:00
Yohann Dudouit 3456950640 Verify integrators are used correctly. 2022-04-06 16:31:23 -07:00
Yohann Dudouit 79e352c460 Remove debugging code. 2022-04-06 16:11:40 -07:00
Yohann Dudouit 3c6210d83a Test NLConvection on mixed meshes. 2022-04-06 16:04:26 -07:00
Yohann Dudouit fbf563955d Split Convection tests and test mixed meshes. 2022-04-06 16:03:36 -07:00
Yohann Dudouit 9a72bced50 Fix bugs in MF NLConvection QFunctions. 2022-04-06 16:02:41 -07:00
Yohann Dudouit b5025ea8b0 Add mixed mesh support to MF NLConvection. 2022-04-06 16:02:09 -07:00
Yohann Dudouit d1a5ffa822 Add mixed mesh support to MF Convection. 2022-04-06 16:01:19 -07:00
Yohann Dudouit 82b32e9a30 Clean a bit MixedIntegrator. 2022-04-06 16:00:09 -07:00
Yohann Dudouit a6cd361884 Add mixed mesh tests to "CEED mass & diffusion". 2022-04-06 11:46:16 -07:00
Yohann Dudouit 15c481f52e Add support for mixed meshes to ceed:MFIntegrator. 2022-04-06 11:45:39 -07:00
Yohann Dudouit 3404d4c938 Wrap "WithIndices" functions to generalize code. 2022-04-06 11:12:28 -07:00
Yohann Dudouit 29d1803362 Avoid applying restriction two times... 2022-04-06 10:11:29 -07:00
Yohann Dudouit e5bcaaffb7 Fix bugs in InitCoefficientWithIndices. 2022-04-05 17:33:03 -07:00
Yohann Dudouit 41e90576de Add support for mixed mesh to VectorMass. 2022-04-05 17:32:36 -07:00
Yohann Dudouit 9c4021e35b Add mixed mesh support to VectorDiffusion. 2022-04-05 17:31:32 -07:00
Yohann Dudouit 2530418b8c Switch between MixedPA and PA. 2022-04-05 17:30:57 -07:00
Yohann Dudouit cd5c8571af Add support for mixed meshes to ConvectionIntegrator. 2022-04-05 16:31:17 -07:00
Julian Andrej 0eb2d04854 make enzyme variables extern 2022-04-05 15:50:09 -07:00
Yohann Dudouit 81c951a8b8 Refactor ceed/restriction.cpp.
- Fix bugs on L2.
2022-04-05 15:41:28 -07:00
Yohann Dudouit 8b8141020d Add InitCoeffRestrictionWithIndices.
- Add `restr_type::Coeff`.
- Fix `QuadCoefficient` on mixed meshes.
2022-04-05 15:40:25 -07:00
Julian Andrej c9f5103796 correct includes 2022-04-05 15:32:37 -07:00
Yohann Dudouit 5b96b41815 Remove unnecessary IntegrationRule in InitRestriction. 2022-04-05 14:11:47 -07:00
Yohann Dudouit 482a7f84ea Add support for QuadratureFunctionCoefficient on mixed meshes. 2022-04-05 12:24:48 -07:00
Yohann Dudouit f188b9eebc Simplify restriction.cpp. 2022-04-04 14:20:17 -07:00
Yohann Dudouit 80ddc79123 Factorize code in basis.cpp. 2022-04-04 13:55:10 -07:00
Yohann Dudouit 31005dda60 More fixes to the path... 2022-04-04 13:10:45 -07:00
Yohann Dudouit bd7b0a2c06 Fix libCEED GPU path. 2022-04-04 13:06:47 -07:00
Yohann Dudouit 4e1e6531f3 Add mixed mesh support for DiffusionIntegrator. 2022-04-04 12:18:09 -07:00
Yohann Dudouit 6223000e9a Add a generic GetRule function. 2022-04-04 12:17:27 -07:00
Yohann Dudouit ec689e5d33 Fix InitBasisWithIndices. 2022-04-04 12:16:13 -07:00
Yohann Dudouit f1c472dc20 Add support for pyramids. 2022-04-01 13:52:41 -07:00
Yohann Dudouit 5fe0d860d7 Avoid building ElementRestriction when using CEED. 2022-04-01 13:42:25 -07:00
Yohann Dudouit accae8301b Fix check for tensor element. 2022-04-01 13:41:47 -07:00
Yohann Dudouit f4578552dc Merge branch 'yohann/mixed-mesh' of https://github.com/mfem/mfem into yohann/mixed-mesh 2022-03-31 17:59:27 -07:00
Yohann Dudouit 485f9b07d7 Add mixed_integrator to interface. 2022-03-31 17:58:32 -07:00
Yohann Dudouit 7f9eb72e74 Add documentation to interface.hpp. 2022-03-31 17:56:49 -07:00
Yohann Dudouit 02e4cbe75b Use Mixed mesh for mass PA. 2022-03-31 17:45:59 -07:00
Yohann Dudouit d81a2728b4 Add MixedPAIntegrator for mixed meshes. 2022-03-31 17:45:59 -07:00
Yohann Dudouit 5316e51c4f Use Mixed mesh for mass PA. 2022-03-31 17:29:49 -07:00
Yohann Dudouit b2825c9625 Add MixedPAIntegrator for mixed meshes. 2022-03-31 17:28:41 -07:00
Will Pazner 1ca041cabc Add (failing) unit test for AssemblyLevel::FULL HypreParMatrix 2022-03-31 15:16:16 -07:00
Julian Andrej 41123cdb19 reviewer comments 2022-03-30 13:05:32 -07:00
Jean-Sylvain CAMIER 35d9a405a6 add benchmarks
* Add tests/benchmarks/bench_nle

* Sync & re-use

* Before cleaning

* cleanup and reuse miniapp headers

* Meld toward enzyme-nonlinear
2022-03-30 11:57:36 -07:00
Julian Andrej 8c76b75573 documentation 2022-03-30 09:20:25 -07:00
Julian Andrej 9d06122995 Merge branch 'master' into enzyme-nonlinear 2022-03-30 09:19:55 -07:00
Julian Andrej 73f4c3298e cleanup namespace use 2022-03-30 09:19:45 -07:00
Julian Andrej 2af6d555a3 changelog 2022-03-30 08:33:19 -07:00
Vladimir Z Tomov d413251dcb Merge branch 'master' into ortho-solver 2022-03-29 11:13:18 -07:00
Socratis Petrides 8bdfcd231e finalizing unit tests for ComplexFactors 2022-03-25 17:54:58 -07:00
Socratis Petrides 5af0b1cf8a fixing some bugs in ComplexFactors 2022-03-25 17:54:34 -07:00
Julian Andrej eba4c64e15 little description of the miniapp 2022-03-25 14:36:47 -07:00
Julian Andrej 5ed43cb1b4 formatting 2022-03-25 14:29:55 -07:00
Julian Andrej c9a8df1e0d formatting 2022-03-25 13:54:26 -07:00
Julian Andrej 6de42881be formatting 2022-03-25 11:13:34 -07:00
Julian Andrej db592e1f2a merge tensor_isotropic and tensor header files 2022-03-25 11:06:35 -07:00
Arturo Vargas 3c7241e735 make style 2022-03-24 16:56:35 -07:00
Arturo Vargas d1dd6c9546 add umpire pools to face geometric factor memory 2022-03-24 16:54:59 -07:00
Socratis Petrides 4564b6dd5d unit tests ref matrices 2022-03-24 15:37:45 -07:00
Socratis Petrides 7f7394c991 adding cholesky and lu factors for complex systems. Started adding unit tests 2022-03-24 15:22:34 -07:00
psocratis e4bd8dd615 fix valgrind complaints for the parallel complex case with sc 2022-03-23 20:36:32 -07:00
psocratis 00f23ff6c7 minor valgrind issue on real example 2022-03-23 18:48:05 -07:00
psocratis 9c6553ce2e fixing valgrind issues for the serial case 2022-03-23 13:09:24 -07:00
Socratis Petrides a008739b3d minor 2022-03-22 16:01:13 -07:00
Socratis Petrides 673bb91447 merge with dpg-dev 2022-03-22 14:38:39 -07:00
Socratis Petrides d322228504 testing dpg residual with cholesky factors 2022-03-22 14:13:56 -07:00
Socratis Petrides 77ef3a2e92 Merge branch 'dpg-dev' into dpg-complex-dev 2022-03-22 12:09:23 -07:00
Socratis Petrides 2cc8c18250 fix repo check 2022-03-22 12:08:56 -07:00
Socratis Petrides 48c54c0bbc fix repo-check 2022-03-22 12:05:22 -07:00
Socratis Petrides 57c99323e7 fix repo check 2022-03-22 12:04:26 -07:00
Julian Andrej 7bf7c35218 copyright 2022-03-22 11:46:18 -07:00
Julian Andrej 8da89221b3 copyright notice 2022-03-22 11:37:56 -07:00
Julian Andrej 24824722f2 Merge branch 'master' into enzyme-nonlinear 2022-03-22 11:35:10 -07:00
Socratis Petrides 1b69590800 2022 2022-03-22 10:29:58 -07:00
Socratis Petrides fec64571ac Merge branch 'dpg-dev' into dpg-complex-dev 2022-03-22 10:27:47 -07:00
Socratis Petrides aa9a4887f7 change to 2022 2022-03-22 10:24:38 -07:00
Socratis Petrides 757369beb3 Merge branch 'master' into dpg-dev 2022-03-22 10:19:35 -07:00
Julian Andrej a7a8e61bb3 missing include 2022-03-18 15:28:51 -07:00
Julian Andrej a26a3dde23 refactor 2022-03-18 14:31:50 -07:00
Julian Andrej e404adf317 add gradient caching 2022-03-17 10:49:27 -07:00
Julian Andrej c7a94e8f8b return const T& instead of copying 2022-03-16 13:19:14 -07:00
Julian Andrej b3e6b22b71 remove enzyme loose-types option 2022-03-16 11:40:47 -07:00
Jean-Sylvain CAMIER 73cb59919e Enzyme nonlinear device [enzyme-nonlinear-device] (#2874)
* Debug device runs

* CUDA runs with nvcc

* Optimize ApplyGradient3D

* Cleanup & Simplify

* Device order 3, optimize option & cleanup

* Cleanup, remove original code & meld toward source

* Remove fdual.hpp from miniapps/autodiff/CMakeLists

* Revert std pow, but nvcc errors

* Add value_type pow(value_type a, value_type b)

* Remove unused cuda header

* Remove extra ';'

* remove extra ';'

* Simplify KernelHelpers templated calls

* Simplify init part of the helper kernels

* Add linalg/tensor_isotropic.hpp and move B,G near instantiated function calls

* Simplify B & G in elasticity kernels
2022-03-14 10:36:29 -07:00
Socratis Petrides 463b57205d Gaussian beam - Acoustics AMR parallel example 2022-03-07 20:35:41 -08:00
Socratis Petrides 0e9e25f893 adaptive complex example with sc, and parallel sc 2022-03-07 14:50:45 -08:00
Socratis Petrides 6598a8d90b adding parallel sc in the complex case 2022-03-07 12:34:02 -08:00
Socratis Petrides 91fabccd8b static cond for the complex case 2022-03-05 14:38:08 -08:00
Socratis Petrides 950fb937c7 Simplifying ComplexNormalEquations interface 2022-03-04 17:56:47 -08:00
Socratis Petrides ac9b14e8d7 Using OperatorHandle (for ComplexOperator) in FormSystemMatrix and FormLinearSystem 2022-03-04 15:53:23 -08:00
Socratis Petrides b58ac482d3 complex valued acoustics works 2022-03-03 19:58:36 -08:00
Socratis Petrides 1ebd603e62 fix signature in ComplexNormalEquations::EliminateVDofsInRHS 2022-03-03 19:57:52 -08:00
Socratis Petrides 6967342813 minor 2022-03-03 13:06:29 -08:00
Socratis Petrides fe16207d6a Merge branch 'dpg-dev' into dpg-complex-dev 2022-03-01 19:24:18 -08:00
Socratis Petrides ba94547c4d fixing residual computation 2022-03-01 19:20:44 -08:00
Socratis Petrides 02ef0f7f04 debugging complex-dpg 2022-02-28 11:01:11 -08:00
Socratis Petrides fa3a262608 starting complex acoustics/helmholtz examples for uw_dpg 2022-02-25 20:19:00 -08:00
Socratis Petrides 0f5b0eb57e place holder for par complex normal equations and sc 2022-02-25 20:15:53 -08:00
Socratis Petrides 8abd6992d8 DPG normal equations for complex case 2022-02-25 20:14:39 -08:00
Socratis Petrides 7349ece185 Merge branch 'dpg-dev' into dpg-complex-dev 2022-02-25 17:47:42 -08:00
Socratis Petrides 58f7aacce9 fix acoustics graph norm 2022-02-25 17:45:49 -08:00
Socratis Petrides af871ffa7b merge complex-linalg 2022-02-25 13:57:50 -08:00
Socratis Petrides 369d55c7b2 Merge branch 'dpg-dev' into dpg-complex-dev 2022-02-25 13:56:25 -08:00
Julian Andrej 65d63395c0 adapt example for modified dual type 2022-02-24 10:35:37 -08:00
Julian Andrej 9fd331714d adapt dual type to miniapp and remove fdual implementation 2022-02-24 08:37:24 -08:00
Socratis Petrides 3876d111cf unit tests from complex dense matrix: Mult, MultAtB, Inverse, SystemMatrix 2022-02-23 18:17:38 -08:00
Socratis Petrides e3085a1182 adding ComplexDenseMatrix class 2022-02-23 18:16:44 -08:00
Julian Andrej ad0a5e0474 doxygen 2022-02-14 14:52:44 -08:00
Julian Andrej 3b0618405b outstream 2022-02-14 14:21:27 -08:00
Julian Andrej 05e264c53e sane formatting 2022-02-11 10:54:58 -08:00
Julian Andrej cd03b3fd74 copyright notice 2022-02-11 10:24:42 -08:00
Julian Andrej bc6d4e68b4 make enzyme version a variable 2022-02-11 10:22:00 -08:00
psocratis 66e0c79b3f small valgrind fix in the parallel case 2022-02-11 09:50:52 -08:00
Julian Andrej 4beda68a36 add enzyme to makefile build system 2022-02-11 08:04:36 -08:00
Julian AndrejandSam Mish 6a79901fa7 draft for nonlinear elasticity example using PA and AD
Co-authored-by: Sam Mish <mish2@llnl.gov>
2022-02-10 11:53:09 -08:00
psocratis 8b5f9f7720 resolving conflicts 2022-02-09 19:50:00 -08:00
psocratis 98739f8c09 fix valgrind complaints in the serial case 2022-02-09 19:41:48 -08:00
Socratis Petrides 84129a1f83 finished Block-sc in the parallel case, uw_dpgp passes initial tests 2022-02-09 17:04:01 -08:00
Socratis Petrides b6ea025795 cleanup, started on par sc case 2022-02-02 20:18:19 -08:00
Socratis Petrides d528e9d63e filling blockstaticcond destructor 2022-02-01 10:19:19 -08:00
Socratis Petrides d18f11e6c7 blockstatic-cond passes tests for primal-dpg 2022-01-31 17:56:37 -08:00
Socratis Petrides efeb400b27 Block sc FormSystemMatrix. Started on ReduceSystem 2022-01-28 20:01:07 -08:00
Socratis Petrides 1451c3c483 small bug-fix in assembly if doftrans is not null 2022-01-27 17:33:04 -08:00
Socratis Petrides f12d46bdf9 Shur complement assembly and conforming assembly 2022-01-27 17:31:55 -08:00
Socratis Petrides 6dfb809f97 changing GetSubMatrix to const 2022-01-27 17:30:38 -08:00
Socratis Petrides ef8785b852 computing indices for interior/interface local dofs for block-static-cond 2022-01-26 18:24:56 -08:00
Socratis Petrides efd182ec4c visualize mesh in amr for the l-shape problem 2022-01-26 18:23:12 -08:00
Socratis Petrides e7856b982a style 2022-01-26 10:59:38 -08:00
Socratis Petrides 4f4d1f9d2d adding function signatures in blockstaticcond 2022-01-26 10:59:19 -08:00
Socratis Petrides 1a89d5af02 started on static condensation for DPG (block) systems 2022-01-25 19:45:40 -08:00
Socratis Petrides c71b02a915 fix print format 2022-01-21 14:37:21 -08:00
Socratis Petrides 5576f3653e style 2022-01-21 13:45:29 -08:00
Socratis Petrides 7f316dd07b changing strong_dpg to use vdim>1 test space 2022-01-21 13:45:00 -08:00
Socratis Petrides 19b5ae6b9a parallel examples acoustics uw_dpg 2022-01-21 13:44:17 -08:00
Socratis Petrides 94cd8859b2 adding adjoint graphnorm in uw_dpg for acoustics 2022-01-21 13:43:56 -08:00
Socratis Petrides 8ea8b97fc8 adding vdim>1 for test spaces in normalequations 2022-01-21 13:43:00 -08:00
Socratis Petrides f9abc77026 clean up 2022-01-20 16:45:43 -08:00
Socratis Petrides 68e3f9aeb9 adding traditional fosls formulation for acoustics (real) 2022-01-20 16:34:51 -08:00
Socratis Petrides 08f018c299 adding uw dpg formulation for acoustics (real) 2022-01-20 16:33:58 -08:00
Socratis Petrides 69e57546d4 adding 'strong' dpg formulation for acoustics 2022-01-20 16:33:35 -08:00
Socratis Petrides 433a29c9e3 fixing comment in diffusion fosls 2022-01-20 16:32:47 -08:00
Socratis Petrides 92ee7099a4 reorganizing examples 2022-01-19 11:05:16 -08:00
Socratis Petrides 808c9cd2c4 Merge branch 'master' into dpg-dev 2022-01-19 10:10:05 -08:00
Socratis Petrides f3cd0a10e7 minor 2022-01-17 11:30:23 -08:00
Vladimir Z Tomov 7de0cfe77d Fixed unused variable for the serial build. 2022-01-10 21:09:16 -08:00
Vladimir Z Tomov 441b503593 Added serial support, MFEM_USE_MPI checks. 2022-01-10 20:59:24 -08:00
Vladimir Z Tomov f1614c5185 Moved OrthoSolver to solvers.hpp/cpp. 2022-01-10 20:48:44 -08:00
Socratis Petrides e6bb8c8976 small bugfix in updating mesh dependent coefficient 2022-01-05 18:09:49 -08:00
Socratis Petrides 4718577810 bug-fix serial AMR in normalequations P/R Mult in RHS and Sol vector 2021-12-30 19:59:14 -08:00
Socratis Petrides 9e520183c8 Merge branch 'master' into dpg-dev 2021-12-30 09:26:52 -08:00
Socratis Petrides 95a40d7377 clean up convection-diffusion 2021-12-22 14:40:11 -08:00
Socratis Petrides 036846bcd6 adding parallel convection-diffusion with AMR example 2021-12-21 17:59:56 -08:00
Socratis Petrides 6c2968156f Merge branch 'master' into dpg-dev 2021-12-21 10:01:43 -08:00
Socratis Petrides 9ba650f2fd adding Erikson Johnson problem for convection-diffusion UW-DPG 2021-12-17 16:34:22 -08:00
Socratis Petrides ee6cb39ee0 Merge branch 'pncmesh-getessvdof-fix' into dpg-dev 2021-12-16 09:46:14 -08:00
Socratis Petrides 1701a6e84c Merge branch 'master' into dpg-dev 2021-12-16 09:45:02 -08:00
Socratis Petrides f500e5220a Parallel AMR for lshape 2021-12-15 18:28:31 -08:00
Socratis Petrides e078288ecb title fix 2021-12-15 12:40:42 -08:00
Socratis Petrides e46c7ac0e7 fix sample run and title in the example 2021-12-15 12:39:33 -08:00
Socratis Petrides c2b133f3c8 minor visualization edits 2021-12-15 12:37:46 -08:00
Socratis Petrides 373379fbdd lshape mesh 2021-12-15 12:20:41 -08:00
Socratis Petrides bfc3835a1d adding AMR l-shape example in diffusion_uwdpg 2021-12-15 12:20:08 -08:00
Socratis Petrides ab8578a728 add element residual computation to NormalEquations 2021-12-15 12:19:30 -08:00
Socratis Petrides fdaaacfdf3 Started residual based error estimator. Done some refactoring 2021-12-13 17:36:52 -08:00
Socratis Petrides 5d7ebbb51a fixed small size bug in DenseMatrix::GetSubMatrix 2021-12-13 17:35:26 -08:00
Socratis Petrides fe0821413a adding parallel test for uw diffusion 2021-12-09 15:16:49 -08:00
Socratis Petrides 695a5adcb2 ParNormalEquations cleanup 2021-12-09 15:16:15 -08:00
Socratis Petrides b2dfc76f1a minor changes in serial example 2021-12-09 15:13:54 -08:00
Socratis Petrides 76c700b41e adding BlockOperator and BlockMatrix in OpType 2021-12-09 15:13:05 -08:00
Socratis Petrides dc3f10fa63 Passing first tests in parallel for ParNormalEquations 2021-12-08 17:36:34 -08:00
Socratis Petrides 420bb73d6c minor change in normal equations constructor 2021-12-08 17:36:11 -08:00
Socratis Petrides 13648768ae removing unused code 2021-12-08 17:34:00 -08:00
Socratis Petrides 7bfda36bca Starting ParNormalEquations -> adding class methods signatures 2021-12-07 18:48:24 -08:00
Socratis Petrides 46fc3ce9c2 remove not used code 2021-12-07 18:47:20 -08:00
Socratis Petrides b3086ce754 Merge branch 'master' into dpg-dev 2021-12-07 13:05:01 -08:00
Socratis Petrides d1312d354a minor bug-fix in the adjoint graph norm 2021-12-03 20:04:49 -08:00
Socratis Petrides 16fcc3f970 Fixing P and R null diagonal blocks to act as Identity for L2 Space and AMR 2021-12-03 20:04:23 -08:00
Socratis Petrides a6caab3bed PartMult and AddPartMult for BlockMatrix 2021-12-03 19:53:27 -08:00
Socratis Petrides 172b5bdcc9 Modifying DPG examples to use block-diagonal preconditioners 2021-12-02 17:25:03 -08:00
Socratis Petrides 72f83c132d Changing normalequations to use only BlockMatrix 2021-12-02 17:24:25 -08:00
Socratis Petrides 911e394d80 adding EliminateRowCols with saving Ae to BlockMatrix class 2021-12-02 17:22:36 -08:00
Socratis Petrides 4ff29e40c9 Refactoring NormalEquations assemble to use BlockMatrix 2021-12-01 19:00:07 -08:00
Socratis Petrides dac7808875 style 2021-11-30 18:23:31 -08:00
Socratis Petrides 246fd8e6fe started element residual calculation for AMR 2021-11-30 18:23:09 -08:00
Socratis Petrides 5e243e01f8 clean up 2021-11-30 18:22:31 -08:00
Socratis Petrides 56b83ea538 UW-DPG with AMR: fixing Block Prolongation/Restriction Operators 2021-11-30 16:41:21 -08:00
Socratis Petrides cd7371896a removing no longer needed test 2021-11-29 17:30:01 -08:00
Socratis Petrides 3fdd3e2450 style 2021-11-29 17:28:42 -08:00
Socratis Petrides 303ccefd83 completing the descructor 2021-11-29 17:28:17 -08:00
Socratis Petrides 48bcc332f7 fix piola map bug in NormalTraceIntegrator 2021-11-29 17:19:05 -08:00
Socratis Petrides 0c23d23874 new diffusion uw-dpg with adjoint graph norm 2021-11-29 17:17:54 -08:00
Socratis Petrides e76cef225d UW-DPG for diffusion works on quad meshes 2021-11-28 15:03:34 -08:00
Socratis Petrides 6f49201e62 Ultraweak-DPG for poisson prototype 2021-11-27 14:23:24 -08:00
Socratis Petrides 1cb75f7730 adding diffusion UW-DPG 2021-11-24 16:56:15 -08:00
Socratis Petrides ef14d682c5 bug-fix ElementTrasformation 2021-11-24 16:55:45 -08:00
Socratis Petrides 54eb78e0df adding block primal test 2021-11-23 17:13:22 -08:00
Socratis Petrides cd1a3a4fc7 fixing minor bug in B^T G^-1 l 2021-11-23 17:12:02 -08:00
Socratis Petrides ffb50c2416 example tests cleanup 2021-11-23 10:05:44 -08:00
Socratis Petrides f568ca3c6e bug fix on accumulating domain integrators 2021-11-23 10:03:13 -08:00
Socratis Petrides c7fb058051 adding NormalTraceIntegrator and AssembleElementMatrix2 for DivDivIntegrator 2021-11-23 09:58:11 -08:00
Socratis Petrides a4d87d936b Adding NormalEquations Assembly for multiple spaces and integrators. Tested succesfully for primal DPG 2021-11-19 19:52:27 -08:00
Socratis Petrides f26bd4bea1 generalizing NormalEquations assembly for multiple fespaces and integrators 2021-11-18 17:20:30 -08:00
Socratis Petrides 6c001c3f9a adding example test for primal DPG 2021-11-15 17:57:09 -08:00
Socratis Petrides 82573af316 new Primal DPG reproduces ex8 2021-11-15 17:56:16 -08:00
Socratis Petrides 4bfb2d62d9 first primal dpg test runs 2021-11-15 13:41:57 -08:00
Socratis Petrides 0bf7a715db minor cleanup 2021-11-12 20:04:01 -08:00
Socratis Petrides ad68c8f245 Fixing doc complaints 2021-11-12 18:52:48 -08:00
Socratis Petrides 0b430fa5f6 Started NormalEquationsWeakFormulation::Assemble 2021-11-12 18:49:06 -08:00
Socratis Petrides 238d1921c7 adding TraceIntegrator and AssembleTraceFaceMatrix 2021-11-12 18:48:05 -08:00
Socratis Petrides a25783e3b4 Simplifying P and R in BlockBilinearForm 2021-11-04 09:43:40 -07:00
Socratis Petrides 3aa8d49ca8 started implementation of trace_elem_integrators for DPG 2021-11-03 18:29:08 -07:00
Socratis Petrides 4ed6a4a014 fixing minor bug in reference BlockFOSLS case 2021-11-03 15:11:20 -07:00
Socratis Petrides 08f910343b AMR for reference Block FOSLS 2021-11-03 11:16:59 -07:00
Socratis Petrides 9fb0340206 fixing minor bug in P/R for AMR with blockforms 2021-11-03 09:03:18 -07:00
Socratis Petrides db40e8125e Setting Prolongation/Restriction for BlockBilinearForm. Tested for 2D AMR 2021-11-02 18:56:07 -07:00
Socratis Petrides 3e46fce65f simplifying BlockBilinearFrom::Assembly() 2021-11-02 17:53:50 -07:00
Socratis Petrides f649ed6b62 investigating possible bug in high order 3D runs wrt to essential BC elimination (example 1 hexa mesh) 2021-11-01 17:34:59 -07:00
Socratis Petrides a1a3a51d86 simplifying offset calculation wrt neg orientation 2021-11-01 17:34:05 -07:00
Socratis Petrides 6728fc7eda make style 2021-11-01 16:44:38 -07:00
Socratis Petrides 71e9d4e1d9 poisson_fosls - reference implementation 2021-11-01 16:44:00 -07:00
Socratis Petrides 7feb560f9b testing blockbilinearform with FOSLS poisson 2021-11-01 16:43:28 -07:00
Socratis Petrides aa9eadfcdf fixing orientation (sign) bug in blockbilinearform assemble 2021-11-01 16:42:59 -07:00
Socratis Petrides 82122f05cf testing block integrator by borrowing (bi)linearIntegrators 2021-11-01 16:42:20 -07:00
Socratis Petrides 2d64fa2162 fix bug in blocklinearform assemble 2021-11-01 16:41:21 -07:00
Socratis Petrides 8041734755 adding DenseMatrix::SetSubMatrix functions 2021-11-01 16:40:24 -07:00
Socratis Petrides 523891f05f adding BlockLinearForm (assemble) with testblocklinearinteg 2021-10-29 18:32:31 -07:00
Socratis Petrides b3fc46b6f2 Merge branch 'master' into dpg-dev 2021-10-29 16:43:38 -07:00
Socratis Petrides 9271494723 Merge branch 'master' into dpg-dev 2021-10-27 08:45:53 -07:00
Socratis Petrides f2dbcecb92 debugging BlockBilinearForm::Assemble() 2021-10-25 16:47:32 -07:00
Socratis Petrides f2af9748c4 fixing offset computation in BlockBilinearForm::Assemble() 2021-10-22 19:39:51 -07:00
Socratis Petrides 9813dd7722 fix doxygen complaint 2021-10-22 19:28:52 -07:00
Socratis Petrides 3806e68ed1 adding new classes (block(bi)linearForms(integ) in support for DPG methods 2021-10-22 17:58:52 -07:00
275 changed files with 31498 additions and 3880 deletions
+3 -1
View File
@@ -20,6 +20,7 @@ on:
jobs:
build:
if: github.repository == 'mfem/mfem' # Don't run in forks
permissions:
packages: write
strategy:
@@ -27,7 +28,8 @@ jobs:
matrix:
# Dockerfiles to build, a matrix supports future expanded builds
container: [["config/docker/Dockerfile", "ghcr.io/mfem/mfem-ubuntu-base"]]
container: [["config/docker/Dockerfile.base", "ghcr.io/mfem/mfem-ubuntu-base"],
["config/docker/Dockerfile", "ghcr.io/mfem/mfem-ubuntu"]]
runs-on: ubuntu-latest
name: Build
+4
View File
@@ -205,6 +205,10 @@ jobs:
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
run: |
$PortFile = 'C:\vcpkg\ports\metis\portfile.cmake'
$OriginalURL = 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-${METIS_VERSION}.tar.gz'
$NewURL = 'https://github.com/mfem/tpls/raw/gh-pages/metis-5.1.0.tar.gz'
(Get-Content $PortFile).replace($OriginalURL, $NewURL) | Set-Content $PortFile
vcpkg install metis --triplet=x64-windows-static
# MFEM build and test
+2
View File
@@ -307,6 +307,8 @@ miniapps/solvers/sol.*
miniapps/parelag/MultilevelHcurlHdivSolver
miniapps/parelag/*.mesh
miniapps/hooke/hooke
# Unit test binary and outputs
tests/unit/output_meshes
tests/unit/unit_tests
+71 -15
View File
@@ -10,20 +10,23 @@
Version 4.4.1 (development)
===========================
- Added example for body-fitted volumetric and shape integration using the
Algoim library.
- Added WhiteGaussianNoiseDomainLFIntegrator: a LinearFormIntegrator class for
spatial Gaussian white noise.
Meshing improvements
--------------------
- Added support for mixed meshes and pyramids in GSLIB-FindPoints.
- Added a new Zienkiewicz-Zhu patch recovery-based a posteriori error estimator.
See fem/estimators.hpp.
Discretization improvements
---------------------------
- Added support for assembling low-order-refined matrices using a GPU-enabled
"batched" algorithm. The lor_solvers and plor_solvers now fully support GPU
acceleration.
- Added support for ParMoonolith, https://bitbucket.org/zulianp/par_moonolith,
which provides parallel non-conforming, non-matching, variational, volumetric
mesh information transfer. With ParMortarAssember, fields can be exchanged
between arbitrarily distributed and unrelated finite element meshes in a
variationally consistent way.
- Added support for partial assembly and fully matrix-free operators on mixed
meshes (different element types and p-adaptivity) through libCEED, including
device acceleration, e.g. with NVIDIA and AMD GPUs. The p-adaptivity is
currently limited by MFEM capabilities, i.e. 2D serial meshes. All mixed
element topologies are supported in serial and parallel: segment, triangle,
square, tetrahedron, cube, prism, and pyramid.
- Added full assembly and device support for several LinearForm integrators:
* DomainLF: (f, v)
@@ -31,18 +34,59 @@ Version 4.4.1 (development)
* DomainLFGrad: (f, grad(v))
* VectorDomainLFGrad: ((f1x,f1y,f1z,...,fnx,fny,fnz), grad(v1,...,vn))
- Added WhiteGaussianNoiseDomainLFIntegrator: a LinearFormIntegrator class for
spatial Gaussian white noise.
- Added a new Zienkiewicz-Zhu patch recovery-based a posteriori error estimator.
See fem/estimators.hpp.
Linear and nonlinear solvers
----------------------------
New and updated examples and miniapps
-------------------------------------
- Added a new elasticity miniapp, Hooke, that showcases a low-level approach of
using MFEM to solve a nonlinear elasticity problem based on the fundamental
finite element operator decomposition. The miniapp also integrates with
automatic differentiation tools like a native dual number implementation or a
third party library such as Enzyme. See miniapps/elasticity for more details.
- Add a new example code, Example 33/33p, to demonstrate the solution of
spectral fractional PDEs with MFEM.
Integrations, testing and documentation
---------------------------------------
- Added a Dockerfile for a simple MFEM container, see config/docker/README.md.
- Added support for assembling low-order-refined matrices using a GPU-enabled
"batched" algorithm. The lor_solvers and plor_solvers now fully support GPU
acceleration.
- Added support for ParMoonolith, https://bitbucket.org/zulianp/par_moonolith,
which provides parallel non-conforming, non-matching, variational, volumetric
mesh information transfer. With ParMortarAssember, fields can be exchanged
between arbitrarily distributed and unrelated finite element meshes in a
variationally consistent way.
- Added support for the LLVM-based automatic differentiation tool Enzyme, see
https://github.com/EnzymeAD/Enzyme. Build system flags and a convenience
header are provided. The functionality and interaction are demonstrated in a
new miniapp in miniapps/elasticity.
- Added example for body-fitted volumetric and shape integration using the
Algoim library.
- Added Windows 2022 CI testing with GitHub actions.
- Added support for mixed meshes and pyramids in GSLIB-FindPoints.
Miscellaneous
-------------
- Various other simplifications, extensions, and bugfixes in the code.
- Added boundary elimination with device support for `SparseMatrix` and
`HypreParMatrix`.
- When using `AssemblyLevel::FULL`, `FABilinearFormExtension::FormSystemMatrix`
outputs an `OperatorHandle` containing a `SparseMatrix` in serial, and an
`HypreParMatrix` in parallel (instead of a `ConstrainedOperator`).
- Added TMOP metrics for mesh untangling and worst-case quality improvement.
Version 4.4, released on March 21, 2022
=======================================
@@ -75,6 +119,11 @@ Meshing improvements
- Added a simpler interface to access mesh face information, see FaceInformation
and GetFaceInformation in the Mesh class.
- Added the method ParMesh::GetSerialMesh() that reconstructs a partitioned
parallel mesh on a given single rank. Also, added the method
ParMesh::PrintAsSerial() that saves the reconstructed serial mesh to a C++
stream on rank 0.
- Gmsh meshes where all elements have zero physical tag (the default Gmsh output
format if no physical groups are defined) are now successfully loaded, and
elements are reassigned attribute number 1.
@@ -177,6 +226,13 @@ Miscellaneous
- Fixed several MinGW build issues on Windows.
- In various places in the library, replace the use of 'long' with 'long long'
to better support Win64 builds where 'long' is 32-bit and 'long long' is
64-bit. On Linux and MacOS, both types are typically 64-bit.
- Update various "MemoryUsage" methods to return 'std::size_t' instead of 'long'
since the latter is 32-bit in Win64 builds.
- Added 'double' atomicAdd implementation for previous versions of CUDA.
- HypreParVector and Vector now support C++ move semantics, and the copy
+11 -4
View File
@@ -136,6 +136,8 @@ if (MFEM_USE_CUDA)
"CUDA flags set for MFEM" FORCE)
set(CUSPARSE_FOUND TRUE)
set(CUSPARSE_LIBRARIES "cusparse")
set(CUBLAS_FOUND TRUE)
set(CUSBLAS_LIBRARIES "cublas")
endif()
if (XSDK_ENABLE_C)
@@ -452,6 +454,11 @@ if (MFEM_USE_PARELAG)
find_package(PARELAG REQUIRED)
endif()
# Enzyme
if (MFEM_USE_ENZYME)
find_package(ENZYME REQUIRED)
endif()
# MFEM_TIMER_TYPE
if (NOT DEFINED MFEM_TIMER_TYPE)
if (APPLE)
@@ -478,8 +485,8 @@ endif()
set(MFEM_TPLS OPENMP HYPRE BLAS LAPACK SuperLUDist METIS SuiteSparse SUNDIALS
PETSC SLEPC MESQUITE MUMPS STRUMPACK AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
ADIOS2 CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM)
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
set(TPL_LIBRARIES "")
@@ -556,9 +563,9 @@ endif()
message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
target_include_directories(mfem
PUBLIC
${TPL_INCLUDE_DIRS}
$<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}>
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}>)
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}>
${TPL_INCLUDE_DIRS})
set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
+1
View File
@@ -131,6 +131,7 @@ The MFEM source code has the following structure:
│ ├── common
│ ├── electromagnetics
│ ├── gslib
│ ├── hooke
│ ├── meshing
│ ├── mtop
│ ├── navier
+16 -2
View File
@@ -558,6 +558,14 @@ MFEM_USE_PARELAG = YES/NO
use ParELAG. In fact, ParELAG is dependent on MFEM. Therefore, this option
currently only concerns the miniapps.
MFEM_USE_ENZYME = YES/NO
Enables automatic differentiation support through the LLVM plugin Enzyme.
This requires the compiler to be set to clang (>=14.0.0). We also advise to
use the link time optimization (LTO) plugin, to enable functions that you
define over multiple files (compilation units) and want to be differentiated
automatically, to work. This requires to also use LLVM/LLD for linking.
Recommended options are in config/defaults.mk.
MFEM_BUILD_TAG = (any value)
An optional tag to characterize the build. Exported to config/config.mk.
Can be used to identify the MFEM build from other makefiles.
@@ -760,8 +768,6 @@ The specific libraries and their options are:
Options: BLITZ_OPT, BLITZ_LIB
Versions: BLITZ = 1.0.2
- MKL CPardiso (optional), used when MFEM_USE_MKL_CPARDISO = YES.
URL: https://software.intel.com/content/www/us/en/develop/tools/math-kernel-library.html
Options: MKL_CPARDISO_OPT, MKL_CPARDISO_LIB.
@@ -838,6 +844,12 @@ The specific libraries and their options are:
URL: https://github.com/LLNL/parelag
Options: PARELAG_DIR, PARELAG_OPT, PARELAG_LIB.
- Enzyme, used when MFEM_USE_ENZYME = YES. Requires LLVM/Clang >= 14.0.0.
URL: https://github.com/EnzymeAD/Enzyme
Options: ENZYME_DIR, ENZYME_OPT, ENZYME_LIB.
Versions: Enzyme >= v0.0.33.
Building with CMake
===================
The MFEM build system consists of two steps: configuration and compilation.
@@ -976,6 +988,7 @@ MFEM_USE_CALIPER
MFEM_USE_FMS
MFEM_USE_BENCHMARK
MFEM_USE_PARELAG
MFEM_USE_ENZYME
The following options are CMake specific:
@@ -1035,6 +1048,7 @@ The CMake build system adds auto-detection for the following packages/libraries:
- FMS
- BENCHMARK
- ParELAG
- Enzyme
The following built-in CMake packages are also used:
+1
View File
@@ -61,6 +61,7 @@ set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
set(MFEM_USE_BENCHMARK @MFEM_USE_BENCHMARK@)
set(MFEM_USE_PARELAG @MFEM_USE_PARELAG@)
set(MFEM_USE_ENZYME @MFEM_USE_ENZYME@)
set(MFEM_CXX_COMPILER "@CMAKE_CXX_COMPILER@")
set(MFEM_CXX_FLAGS "@CMAKE_CXX_FLAGS@")
+3
View File
@@ -190,4 +190,7 @@
// Enable MFEM functionality based on the Google Benchmark library.
#cmakedefine MFEM_USE_BENCHMARK
// Enable Enzyme for AD
#cmakedefine MFEM_USE_ENZYME
#endif // MFEM_CONFIG_HEADER
+27
View File
@@ -0,0 +1,27 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
message(STATUS "Looking for ENZYME ...")
message(STATUS " in ENZYME_DIR = ${ENZYME_DIR}")
# Make sure the directory and version combination works. Do nothing otherwise.
if(EXISTS "${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
message(STATUS "Found ENZYME: ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
# Set ENZYME_FOUND
set(ENZYME_FOUND TRUE CACHE BOOL "ENZYME was found." FORCE)
# Set CXX flags to accomodate the Enzyme Clang plugin
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Xclang -load -Xclang ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so -mllvm -enzyme-loose-types=1")
set(MFEM_USE_ENZYME YES)
else()
endif()
@@ -894,7 +894,7 @@ function(mfem_export_mk_files)
MFEM_USE_HIP MFEM_USE_RAJA MFEM_USE_OCCA MFEM_USE_CEED MFEM_USE_CALIPER
MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2 MFEM_USE_MKL_CPARDISO
MFEM_USE_ADFORWARD MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG
MFEM_USE_MOONOLITH MFEM_USE_ALGOIM)
MFEM_USE_MOONOLITH MFEM_USE_ALGOIM MFEM_USE_ENZYME)
foreach(var ${CONFIG_MK_BOOL_VARS})
if (${var})
set(${var} YES)
+3
View File
@@ -195,4 +195,7 @@
// Enable functionality based on the Google Benchmark library.
// #define MFEM_USE_BENCHMARK
// Enable the Enzyme LLVM plugin
// #define MFEM_USE_ENZYME
#endif // MFEM_CONFIG_HEADER
+1
View File
@@ -63,6 +63,7 @@ MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
MFEM_USE_BENCHMARK = @MFEM_USE_BENCHMARK@
MFEM_USE_PARELAG = @MFEM_USE_PARELAG@
MFEM_USE_ENZYME = @MFEM_USE_ENZYME@
# Compiler, compile options, and link options
MFEM_CXX = @MFEM_CXX@
+1
View File
@@ -64,6 +64,7 @@ option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
option(MFEM_USE_PARELAG "Enable ParELAG" OFF)
option(MFEM_USE_ENZYME "Enable Enzyme" OFF)
# Optional overrides for autodetected MPIEXEC and MPIEXEC_NUMPROC_FLAG
# set(MFEM_MPIEXEC "mpirun" CACHE STRING "Command for running MPI tests")
+21 -1
View File
@@ -42,6 +42,9 @@ STATIC = YES
SHARED = NO
# CUDA configuration options
#
# If you set MFEM_USE_ENZYME=YES, CUDA_CXX has to be configured to use cuda with
# clang as its host compiler.
CUDA_CXX = nvcc
CUDA_ARCH = sm_60
CUDA_FLAGS = -x=cu --expt-extended-lambda -arch=$(CUDA_ARCH)
@@ -163,6 +166,7 @@ MFEM_USE_ADFORWARD = NO
MFEM_USE_CODIPACK = NO
MFEM_USE_BENCHMARK = NO
MFEM_USE_PARELAG = NO
MFEM_USE_ENZYME = NO
# MPI library compile and link flags
# These settings are used only when building MFEM with MPI + HIP
@@ -203,7 +207,7 @@ HYPRE_OPT = -I$(HYPRE_DIR)/include
HYPRE_LIB = -L$(HYPRE_DIR)/lib -lHYPRE
ifeq (YES,$(MFEM_USE_CUDA))
# This is only necessary when hypre is built with cuda:
HYPRE_LIB += -lcusparse -lcurand
HYPRE_LIB += -lcusparse -lcurand -lcublas
endif
ifeq (YES,$(MFEM_USE_HIP))
# This is only necessary when hypre is built with hip:
@@ -520,6 +524,22 @@ PARELAG_DIR = @MFEM_DIR@/../parelag
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
PARELAG_LIB = -L$(PARELAG_DIR)/build/src -lParELAG
# Enzyme configuration
# If you want to enable automatic differentiation at compile time, use the
# options below, adapted to your configuration. To be more flexible, we
# recommend using the Enzyme plugin during link time optimization. One option is
# to add your options to the global compiler/linker flags like
#
# BASE_FLAGS += -flto
# CXX_XLINKER += -fuse-ld=lld -Wl,--lto-legacy-pass-manager\
# -Wl,-mllvm=-load=$(ENZYME_DIR)/LLDEnzyme-$(ENZYME_VERSION).so -Wl,
#
ENZYME_DIR ?= @MFEM_DIR@/../enzyme
ENZYME_VERSION ?= 14
ENZYME_OPT = -fno-experimental-new-pass-manager -Xclang -load -Xclang $(ENZYME_DIR)/ClangEnzyme-$(ENZYME_VERSION).so
ENZYME_LIB = ""
# If YES, enable some informational messages
VERBOSE = NO
+19 -22
View File
@@ -1,30 +1,27 @@
FROM ghcr.io/rse-ops/cuda-ubuntu-20.04:cuda-11.0.3
FROM ghcr.io/mfem/mfem-ubuntu-base:latest as builder
# docker build -t ghcr.io/mfem/mfem-ubuntu-base .
# docker build -t ghcr.io/mfem/mfem-ubuntu .
COPY ./config/docker/spack.yaml /opt/mfem-env/spack.yaml
RUN apt-get install -y python3 && \
cd /opt/mfem-env && \
. /opt/spack/share/spack/setup-env.sh && \
spack env activate . && \
spack env view regenerate
FROM ubuntu:22.04
COPY --from=builder /opt/view /opt/view
COPY --from=builder /opt/mfem-view /opt/mfem-view
RUN apt-get update && \
apt-get install -y unzip gfortran && \
spack compiler find && \
apt-get install -y libcurl4-openssl-dev libssl-dev
# /code is the working directory for code
WORKDIR /code
COPY . /code
# This is for a spack environment/view to install from there
WORKDIR /opt/mfem-env
RUN . /opt/spack/share/spack/setup-env.sh && \
spack env create -d . && \
echo " concretization: together" >> spack.yaml && \
spack env activate . && \
spack develop --path /code mfem@master+examples+miniapps && \
spack add mfem@master+examples+miniapps && \
spack install
# ensure mfem always on various paths
RUN cd /opt/mfem-env && \
spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
ENV PATH=$PATH:/opt/mfem-view/bin
ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mfem-view/lib:/opt/mfem-view/lib64
ENV DEBIAN_FRONTEND=noninteractive
# The user will see the view on shell into the container
WORKDIR /opt/mfem-env/.spack-env/view/
ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
WORKDIR /opt/mfem-view
ENTRYPOINT ["/bin/bash"]
+47
View File
@@ -0,0 +1,47 @@
FROM ghcr.io/rse-ops/cuda-ubuntu-20.04:cuda-11.0.3
# docker build -f Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
RUN apt-get update && \
apt-get install -y unzip gfortran && \
spack compiler find && \
apt-get install -y libcurl4-openssl-dev libssl-dev
# /code is the working directory for code
WORKDIR /code
COPY . /code
# This is for a spack environment/view to install from there
RUN mkdir -p /opt/mfem-env \
&& (echo "spack:" \
&& echo " view:" \
&& echo " mfem:" \
&& echo " root: /opt/mfem-view" \
&& echo " link_type: copy" \
&& echo " packages:" \
&& echo " all:" \
&& echo " target:" \
&& echo " - x86_64_v3" \
&& echo " config:" \
&& echo " concretizer: clingo" \
&& echo " compiler:" \
&& echo " target:" \
&& echo " - x86_64_v3" \
&& echo " install_missing_compilers: true" \
&& echo " concretization: together") > /opt/mfem-env/spack.yaml
RUN cd /opt/mfem-env && \
. /opt/spack/share/spack/setup-env.sh && \
spack env activate . && \
spack develop --path /code mfem@master+examples+miniapps && \
spack add mfem@master+examples+miniapps # && \
# spack install
# ensure mfem always on various paths
#RUN cd /opt/mfem-env && \
# spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
# Present the software install when we shell in
# The view is at /opt/mfem-env/.spack-env/view
#WORKDIR /opt/software
#ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
+24 -7
View File
@@ -1,7 +1,8 @@
# mfem Docker
We provide a [Dockerfile](Dockerfile) to build an ubuntu base image. You can use
this image for a demo of using mfem! 🎉️
We provide a [Dockerfile.base](Dockerfile.base) to build an ubuntu base image,
and a [Dockerfile](Dockerfile) to build a smaller one with a multi-stage build.
You can use this image for a demo of using mfem! 🎉️
Updated containers are built and deployed on merges to the main branch and releases.
If you want to request a build on demand, you can [manually run the workflow](https://docs.github.com/en/actions/managing-workflow-runs/manually-running-a-workflow) thanks to the workflow dispatch event.
@@ -14,18 +15,33 @@ is the [GitHub packages](https://github.com/features/packages) registry that sup
Docker images and other OCI artifacts. From the root of the repository:
```bash
$ docker build -f config/docker/Dockerfile -t ghcr.io/mfem/mfem-ubuntu-base .
$ docker build -f config/docker/Dockerfile -t ghcr.io/mfem/mfem-ubuntu .
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
```
or this directory:
### Shell Ubuntu
To shell into the container:
```bash
$ docker build -f Dockerfile -t ghcr.io/mfem/mfem-ubuntu-base ../../
$ docker run -it ghcr.io/mfem/mfem-ubuntu
```
### Shell
This smaller image has a view where everything is installed.
To shell into a container (here is an example with ubuntu):
```bash
$ ls
bin etc include lib libexec sbin share var
```
- Examples are in share/mfem/examples
- Examples are in share/mfem/miniapps
You can read more about interaction with these examples and miniapps below.
### Shell Ubuntu Base
To shell into the container:
```bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
@@ -128,3 +144,4 @@ $ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/src bash
In the above, we can pretend your project is in the present working directory (PWD) and we are
binding to source. You can then use the mfem in the container for development, and if you
want to distribute your library or app in a container, you can use the mfem container as the base.
+11
View File
@@ -0,0 +1,11 @@
spack:
specs: [mfem@master+examples+miniapps]
view:
mfem:
root: /opt/mfem-view
link_type: copy
concretization: together
develop:
mfem:
path: /code
spec: mfem@master+examples+miniapps
-86
View File
@@ -1,86 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
#
dimension
3
elements
8
1 5 0 1 10 9 3 4 13 12
1 5 1 2 11 10 4 5 14 13
1 5 3 4 13 12 6 7 16 15
1 5 4 5 14 13 7 8 17 16
1 5 9 10 19 18 12 13 22 21
1 5 10 11 20 19 13 14 23 22
1 5 12 13 22 21 15 16 25 24
1 5 13 14 23 22 16 17 26 25
#
boundary
24
1 3 1 0 9 10
1 3 2 1 10 11
1 3 10 9 18 19
1 3 11 10 19 20
2 3 0 3 12 9
2 3 9 12 21 18
2 3 3 6 15 12
2 3 12 15 24 21
3 3 0 1 4 3
3 3 1 2 5 4
3 3 3 4 7 6
3 3 4 5 8 7
4 3 6 7 16 15
4 3 7 8 17 16
4 3 15 16 25 24
4 3 16 17 26 25
5 3 18 21 22 19
5 3 19 22 23 20
5 3 21 24 25 22
5 3 22 25 26 23
6 3 2 11 14 5
6 3 11 20 23 14
6 3 5 14 17 8
6 3 14 23 26 17
vertices
27
3
0.0 0.0 0.0
0.5 0.0 0.0
1.0 0.0 0.0
0.0 0.0 0.5
0.5 0.0 0.5
1.0 0.0 0.5
0.0 0.0 1.0
0.5 0.0 1.0
1.0 0.0 1.0
0.0 0.5 0.0
0.5 0.5 0.0
1.0 0.5 0.0
0.0 0.5 0.5
0.5 0.5 0.5
1.0 0.5 0.5
0.0 0.5 1.0
0.5 0.5 1.0
1.0 0.5 1.0
0.0 1.0 0.0
0.5 1.0 0.0
1.0 1.0 0.0
0.0 1.0 0.5
0.5 1.0 0.5
1.0 1.0 0.5
0.0 1.0 1.0
0.5 1.0 1.0
1.0 1.0 1.0
-84
View File
@@ -1,84 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
#
dimension
3
elements
8
1 5 0 1 4 3 9 10 13 12
1 5 1 2 5 4 10 11 14 13
1 5 9 10 13 12 18 19 22 21
1 5 10 11 14 13 19 20 23 22
1 5 3 4 7 6 12 13 16 15
1 5 4 5 8 7 13 14 17 16
1 5 12 13 16 15 21 22 25 24
1 5 13 14 17 16 22 23 26 25
boundary
24
1 3 0 1 10 9
1 3 1 2 11 10
1 3 9 10 19 18
1 3 10 11 20 19
3 3 0 3 4 1
3 3 1 4 5 2
3 3 3 6 7 4
3 3 4 7 8 5
3 3 18 19 22 21
3 3 19 20 23 22
3 3 21 22 25 24
3 3 22 23 26 25
3 3 2 5 14 11
3 3 11 14 23 20
3 3 5 8 17 14
3 3 14 17 26 23
3 3 0 9 12 3
3 3 9 18 21 12
3 3 3 12 15 6
3 3 12 21 24 15
2 3 6 15 16 7
2 3 7 16 17 8
2 3 15 24 25 16
2 3 16 25 26 17
vertices
27
3
0.0 0.0 0.0
0.5 0.0 0.0
1.0 0.0 0.0
0.0 0.0 0.5
0.5 0.0 0.5
1.0 0.0 0.5
0.0 0.0 1.0
0.5 0.0 1.0
1.0 0.0 1.0
0.0 0.5 0.0
0.5 0.5 0.0
1.0 0.5 0.0
0.0 0.5 0.5
0.5 0.5 0.5
1.0 0.5 0.5
0.0 0.5 1.0
0.5 0.5 1.0
1.0 0.5 1.0
0.0 1.0 0.0
0.5 1.0 0.0
1.0 1.0 0.0
0.0 1.0 0.5
0.5 1.0 0.5
1.0 1.0 0.5
0.0 1.0 1.0
0.5 1.0 1.0
1.0 1.0 1.0
@@ -0,0 +1,310 @@
// Example run: ./FOSLS2D_maxwell -ref 4 -o 3 -sol 1 -k 3.0
// ∇ × E - ω H = 0
// -ω E + ∇ × H = J
// --------------------------------------------------------------------------
// | | E | H | RHS |
// --------------------------------------------------------------------------
// | F | (∇ × E,∇ × F)+ ω^2 (E,F) | - ω (∇ × H,F) - ω (H,curF) | - ω (J,F) |
// | | | | |
// | G |-ω (E,∇ × G)-ω (∇ × E,G) | (∇ × H,∇ × G)+ ω^2(H,G) | (J,∇ × G) |
// for E in H1 (scalar) we have ∇ × E = [0 1;-1 0] ∇ E
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
// Define exact solution
double E_exact(const Vector &x);
void H_exact(const Vector &x, Vector &H);
double frhs(const Vector &x);
void fvrhs(const Vector &x, Vector &f);
void get_maxwell_solution(const Vector &x, double & E, Vector & curlE, double & curl2E);
int dim;
double omega;
int isol = 0;
int main(int argc, char *argv[])
{
StopWatch chrono;
// 1. Parse command-line options.
// geometry file
const char *mesh_file = "../data/star.mesh";
// finite element order of approximation
int order = 1;
// visualization flag
bool visualization = 1;
int ref = 1;
// number of wavelengths
double k = 0.6;
// optional command line inputs
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree) or -1 for"
" isoparametric space.");
args.AddOption(&ref, "-ref", "--init-refinements",
"Number of initial mesh refinements");
args.AddOption(&k, "-k", "--wavelengths",
"Number of wavelengths.");
args.AddOption(&isol, "-sol", "--solution",
"Exact Solution: 0) Polynomial, 1) Sinusoidal.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
omega = 2.0 * M_PI * k;
// Mesh mesh(1, 1, Element::QUADRILATERAL, true, 1.0, 1.0, false);
Mesh mesh(mesh_file, 1, 1);
dim = mesh.Dimension();
if (dim == 3) {MFEM_ABORT("This is 2D Maxwell")};
for (int i = 0; i < ref; i++)
{
mesh.UniformRefinement();
}
H1_FECollection H1fec(order,dim);
FiniteElementSpace H1fes(&mesh, &H1fec);
ND_FECollection NDfec(order, dim);
FiniteElementSpace NDfes(&mesh, &NDfec);
Array<int> ess_tdof_list;
Array<int> ess_bdr;
if (mesh.bdr_attributes.Size())
{
ess_bdr.SetSize(mesh.bdr_attributes.Max());
ess_bdr = 1;
// Essential BC on E. Nothing on H
H1fes.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
Array<int> block_offsets(3);
block_offsets[0] = 0;
block_offsets[1] = H1fes.GetVSize();
block_offsets[2] = NDfes.GetVSize();
block_offsets.PartialSum();
BlockVector x(block_offsets), b(block_offsets);
x = 0.0;
b = 0.0;
FunctionCoefficient Eex(E_exact);
VectorFunctionCoefficient Hex(dim, H_exact);
GridFunction E_gf;
GridFunction H_gf;
E_gf.MakeRef(&H1fes, x.GetBlock(0));
E_gf.ProjectBdrCoefficient(Eex,ess_bdr);
H_gf.MakeRef(&NDfes, x.GetBlock(1));
FunctionCoefficient f(frhs);
ProductCoefficient f_E(-omega, f);
VectorFunctionCoefficient f_H(1,fvrhs);
LinearForm b_E;
b_E.Update(&H1fes, b.GetBlock(0), 0);
b_E.AddDomainIntegrator(new DomainLFIntegrator(f_E));
b_E.Assemble();
LinearForm b_H;
b_H.Update(&NDfes, b.GetBlock(1), 0);
b_H.AddDomainIntegrator(new VectorFEDomainLFCurlIntegrator(f_H));
b_H.Assemble();
// 7. Bilinear form a(.,.) on the finite element space
ConstantCoefficient one(1.0);
ConstantCoefficient omeg2(pow(omega, 2));
ConstantCoefficient negomega(-(omega));
DenseMatrix mat(2);
mat(0,0) = 0.; mat(0,1) = 1.;
mat(1,0) = -1.; mat(1,1) = 0.;
MatrixConstantCoefficient rot(mat);
BilinearForm a_EE(&H1fes);
a_EE.AddDomainIntegrator(new DiffusionIntegrator(one));
a_EE.AddDomainIntegrator(new MassIntegrator(omeg2));
a_EE.Assemble();
a_EE.EliminateEssentialBC(ess_bdr, x.GetBlock(0), b.GetBlock(0));
a_EE.Finalize();
SparseMatrix &A_EE = a_EE.SpMat();
ScalarMatrixProductCoefficient c1(-omega, rot);
MixedBilinearForm a_EH(&H1fes,&NDfes);
// - omega (rot grad E, G) - (omega E, curl G)
a_EH.AddDomainIntegrator(new MixedVectorGradientIntegrator(c1));
a_EH.AddDomainIntegrator(new MixedScalarWeakCurlIntegrator(negomega));
a_EH.Assemble();
a_EH.EliminateTrialDofs(ess_bdr, x.GetBlock(0), b.GetBlock(1));
a_EH.Finalize();
SparseMatrix &A_EH = a_EH.SpMat();
SparseMatrix * A_HE = Transpose(A_EH);
BilinearForm a_HH(&NDfes);
a_HH.AddDomainIntegrator(new CurlCurlIntegrator(one)); // one is the coeff
a_HH.AddDomainIntegrator(new VectorFEMassIntegrator(omeg2)); // one is the coeff
a_HH.Assemble();
a_HH.Finalize();
SparseMatrix &A_HH = a_HH.SpMat();
BlockMatrix LS_Maxwellop(block_offsets);
LS_Maxwellop.SetBlock(0, 0, &A_EE);
LS_Maxwellop.SetBlock(0, 1, A_HE);
LS_Maxwellop.SetBlock(1, 0, &A_EH);
LS_Maxwellop.SetBlock(1, 1, &A_HH);
UMFPackSolver invE;
invE.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
invE.SetOperator(LS_Maxwellop.GetBlock(0,0));
UMFPackSolver invH;
invH.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
invH.SetOperator(LS_Maxwellop.GetBlock(1,1));
BlockDiagonalPreconditioner prec(block_offsets);
prec.SetDiagonalBlock(0, &invE);
prec.SetDiagonalBlock(1, &invH);
int maxit(5000);
double rtol(1.e-16);
double atol(0.0);
CGSolver pcg;
pcg.SetAbsTol(atol);
pcg.SetRelTol(rtol);
pcg.SetMaxIter(maxit);
pcg.SetOperator(LS_Maxwellop);
pcg.SetPreconditioner(prec);
pcg.SetPrintLevel(3);
pcg.Mult(b, x);
int order_quad = max(2, 2 * order + 1);
const IntegrationRule *irs[Geometry::NumGeom];
for (int i = 0; i < Geometry::NumGeom; ++i)
{
irs[i] = &(IntRules.Get(i, order_quad));
}
double Error_E = E_gf.ComputeL2Error(Eex, irs);
double Error_H = H_gf.ComputeL2Error(Hex, irs);
cout << "|| E_h - E || = " << Error_E << "\n";
cout << "|| H_h - H || = " << Error_H << "\n";
cout << "Total error = " << sqrt(Error_H*Error_H+Error_E*Error_E) << "\n";
GridFunction E_exgf(&H1fes);
E_exgf.ProjectCoefficient(Eex);
GridFunction H_exgf(&NDfes);
H_exgf.ProjectCoefficient(Hex);
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream sol_sock(vishost, visport);
sol_sock.precision(8);
socketstream ex_sock(vishost, visport);
ex_sock.precision(8);
socketstream sol_sockH(vishost, visport);
sol_sockH.precision(8);
socketstream ex_sockH(vishost, visport);
ex_sockH.precision(8);
sol_sock << "solution\n"
<< mesh << E_gf << "window_title 'Numerical E'" << "keys rRljc\n"
<< flush;
ex_sock << "solution\n"
<< mesh << E_exgf << "window_title 'Exact E'" << "keys rRljc\n"
<< flush;
sol_sockH << "solution\n"
<< mesh << H_gf << "window_title 'Numerical H'" << "keys rRljc\n"
<< flush;
ex_sockH << "solution\n"
<< mesh << H_exgf << "window_title 'Exact H'" << "keys rRljc\n"
<< flush;
}
delete A_HE;
return 0;
}
double E_exact(const Vector &x)
{
double E, curl2E;
Vector curlE(2);
get_maxwell_solution(x, E, curlE, curl2E);
return E; //Scalar
}
//define exact solution
void H_exact(const Vector &x, Vector &H)
{
double E, curl2E;
Vector curlE(2);
get_maxwell_solution(x, E, curlE, curl2E);
H[0] = curlE[0]/omega;
H[1] = curlE[1]/omega;
}
double frhs(const Vector &x)
{
double E, curl2E;
Vector curlE(2);
get_maxwell_solution(x, E, curlE, curl2E);
// - omega E + curl H = f
// - omega E + curl (curl E) / omega = f
double f = - omega * E + curl2E / omega;
return f;
}
void fvrhs(const Vector &x, Vector &f)
{
double E, curl2E;
Vector curlE(2);
get_maxwell_solution(x, E, curlE, curl2E);
f[0] = - omega * E + curl2E / omega;
}
void get_maxwell_solution(const Vector &X, double & E, Vector & curlE, double & curl2E)
{
double x = X[0];
double y = X[1];
double Ex, Ey, Exx, Eyy;
if (isol == 0) // polynomial
{
E = x * (1.0 - x) * y * (1.0 - y);
Ex = (1.0 - 2.0 * x) * y * (1.0 - y);
Ey = x * (1.0 - x) * (1.0 - 2.0 * y);
Exx = -2.0 * y * (1.0 - y);
Eyy = -2.0 * x * (1.0 - x);
}
else
{
double s = omega * (y+x);
E = cos(s);
Ex = -omega * sin(s);
Ey = Ex;
Exx = - omega * omega * E;
Eyy = Exx;
}
curlE[0] = Ey;
curlE[1] = -Ex;
curl2E = -Exx - Eyy;
}
+61
View File
@@ -0,0 +1,61 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Use the MFEM build directory
MFEM_DIR ?= ../../..
MFEM_BUILD_DIR ?= ../../..
SRC = $(if $(MFEM_DIR:../../..=),$(MFEM_DIR)/examples/dpg_tests/EM-diffusion,)
CONFIG_MK = $(MFEM_BUILD_DIR)/config/config.mk
MFEM_LIB_FILE = mfem_is_not_built
-include $(CONFIG_MK)
SEQ_EXAMPLES = primal_dpg
PAR_EXAMPLES =
ifeq ($(MFEM_USE_MPI),NO)
EXAMPLES = $(SEQ_EXAMPLES)
else
EXAMPLES = $(PAR_EXAMPLES) $(SEQ_EXAMPLES)
endif
.SUFFIXES:
.SUFFIXES: .o .cpp .mk
.PHONY: all clean clean-build clean-exec
# Remove built-in rule
%: %.cpp
# Replace the default implicit rule for *.cpp files
%: $(SRC)%.cpp $(MFEM_LIB_FILE) $(CONFIG_MK)
$(MFEM_CXX) $(MFEM_FLAGS) $< -o $@ $(MFEM_LIBS)
all: $(EXAMPLES)
MFEM_TESTS = EXAMPLES
include $(MFEM_TEST_MK)
# Testing: Parallel vs. serial runs
RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
%-test-par: %
@$(call mfem-test,$<, $(RUN_MPI), Parallel example)
%-test-seq: %
@$(call mfem-test,$<,, Serial example)
clean: clean-build clean-exec
clean-build:
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
rm -rf *.dSYM *.TVD.*breakpoints
rm -rf ParaView
clean-exec:
@@ -0,0 +1,201 @@
// MFEM primal_dpg example
//
// Compile with: make primal_dpg
//
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
void E_exact(const Vector &, Vector &);
void f_exact(const Vector &, Vector &);
double freq = 1.0, kappa;
int dim;
int main(int argc, char *argv[])
{
// 1. Parse command line options
const char *mesh_file = "../../../data/star.mesh";
int order = 1;
bool static_cond = false;
int ref = 0;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh", "Mesh file to use.");
args.AddOption(&order, "-o", "--order", "Finite element polynomial degree");
args.AddOption(&freq, "-f", "--frequency", "Set the frequency for the exact"
" solution.");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.AddOption(&ref, "-ref", "--refinements",
"Number of refinements.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
kappa = freq * M_PI;
// 2. Read the mesh from the given mesh file, and refine once uniformly.
Mesh mesh(mesh_file);
for (int i = 0; i<ref; i++)
{
mesh.UniformRefinement();
}
dim = mesh.Dimension();
int sdim = mesh.SpaceDimension();
// 3. Define a finite element space on the mesh. Here we use H1 continuous
// high-order Lagrange finite elements of the given order.
ND_FECollection fec(order, mesh.Dimension());
FiniteElementSpace NDfes(&mesh, &fec);
FiniteElementCollection * trace_fec = nullptr;
if (dim == 3)
{
trace_fec = new ND_Trace_FECollection(order,mesh.Dimension());
}
else
{
trace_fec = new H1_Trace_FECollection(order,mesh.Dimension());
}
FiniteElementSpace trace_fes(&mesh, trace_fec);
int test_order = order+1;
ND_FECollection test_fec(test_order,mesh.Dimension());
Array<FiniteElementSpace * > trial_fes;
Array<FiniteElementCollection * > test_fecs;
trial_fes.Append(&NDfes);
trial_fes.Append(&trace_fes);
test_fecs.Append(&test_fec);
NormalEquations * a = new NormalEquations(trial_fes,test_fecs);
ConstantCoefficient one(1.0);
a->AddTrialIntegrator(new CurlCurlIntegrator(one),0,0);
a->AddTrialIntegrator(new VectorFEMassIntegrator(one),0,0);
a->AddTrialIntegrator(new TangentTraceIntegrator,1,0);
a->AddTestIntegrator(new CurlCurlIntegrator(one),0,0);
a->AddTestIntegrator(new VectorFEMassIntegrator(one),0,0);
VectorFunctionCoefficient f(sdim, f_exact);
a->AddDomainLFIntegrator(new VectorFEDomainLFIntegrator(f),0);
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
Array<int> ess_tdof_list;
Array<int> ess_bdr;
if (mesh.bdr_attributes.Size())
{
ess_bdr.SetSize(mesh.bdr_attributes.Max());
ess_bdr = 1;
NDfes.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
Vector X,B;
OperatorPtr Ah;
VectorFunctionCoefficient E(sdim, E_exact);
Array<int> offsets(3);
offsets[0] = 0;
offsets[1] = NDfes.GetVSize();
offsets[2] = trace_fes.GetVSize();
offsets.PartialSum();
BlockVector x(offsets);
x = 0.;
GridFunction E_gf(&NDfes);
E_gf.MakeRef(&NDfes,x.GetBlock(0));
E_gf.ProjectBdrCoefficientTangent(E,ess_bdr);
E_gf.ProjectCoefficient(E);
a->FormLinearSystem(ess_tdof_list,x,Ah,X,B);
BlockMatrix * A = (BlockMatrix *)(Ah.Ptr());
BlockDiagonalPreconditioner * M = new BlockDiagonalPreconditioner(A->RowOffsets());
M->owns_blocks = 1;
for (int i=0; i<A->NumRowBlocks(); i++)
{
M->SetDiagonalBlock(i,new UMFPackSolver(A->GetBlock(i,i)));
}
GMRESSolver cg;
cg.SetRelTol(1e-8);
cg.SetMaxIter(2000);
cg.SetPrintLevel(3);
cg.SetPreconditioner(*M);
cg.SetOperator(*A);
cg.Mult(B, X);
delete M;
a->RecoverFEMSolution(X,x);
E_gf.MakeRef(&NDfes,x.GetData());
double L2Error = E_gf.ComputeL2Error(E);
mfem::out << "L2_error = " << L2Error << endl;
char vishost[] = "localhost";
int visport = 19916;
socketstream solu_sock(vishost, visport);
solu_sock.precision(8);
solu_sock << "solution\n" << mesh << E_gf <<
"window_title 'Numerical u' "
<< flush;
delete trace_fec;
return 0;
}
void E_exact(const Vector &x, Vector &E)
{
if (dim == 3)
{
E(0) = sin(kappa * x(1));
E(1) = sin(kappa * x(2));
E(2) = sin(kappa * x(0));
}
else
{
E(0) = sin(kappa * x(1));
E(1) = sin(kappa * x(0));
if (x.Size() == 3) { E(2) = 0.0; }
}
}
void f_exact(const Vector &x, Vector &f)
{
if (dim == 3)
{
f(0) = (1. + kappa * kappa) * sin(kappa * x(1));
f(1) = (1. + kappa * kappa) * sin(kappa * x(2));
f(2) = (1. + kappa * kappa) * sin(kappa * x(0));
}
else
{
f(0) = (1. + kappa * kappa) * sin(kappa * x(1));
f(1) = (1. + kappa * kappa) * sin(kappa * x(0));
if (x.Size() == 3) { f(2) = 0.0; }
}
}
@@ -0,0 +1,677 @@
// MFEM Ultraweak DPG acoustics example
//
// Compile with: make uw_dpg
//
// - Δ p - ω^2 p = f̃ , in Ω
// p = p_0, on ∂Ω
// First Order System
// ∇ p + i ω u = 0, in Ω
// ∇⋅u + i ω p = f, in Ω
// p = p_0, in ∂Ω
// where f:=f̃/(i ω)
// UW-DPG:
//
// p ∈ L^2(Ω), u ∈ (L^2(Ω))^dim
// p̂ ∈ H^1/2(Ω), û ∈ H^-1/2(Ω)
// -(p, ∇⋅v) + i ω (u , v) + < p̂, v⋅n> = 0, ∀ v ∈ H(div,Ω)
// -(u , ∇ q) + i ω (p , q) + < û, q > = (f,q) ∀ q ∈ H^1(Ω)
// p̂ = p_0 on ∂Ω
// Note:
// p̂ := p on Γ_h (skeleton)
// û := u on Γ_h
// -------------------------------------------------------------
// | | p | u | p̂ | û | RHS |
// -------------------------------------------------------------
// | v | -(p, ∇⋅v) | i ω (u,v) | < p̂, v⋅n> | | |
// | | | | | | |
// | q | i ω (p,q) |-(u , ∇ q) | | < û,q > | (f,q) |
// where (q,v) ∈ H^1(Ω) × H(div,Ω)
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
void acoustics_solution(const Vector & X, complex<double> & p,
vector<complex<double>> &dp, complex<double> & d2p);
void acoustics_solution_r(const Vector & X, double & p,
Vector &dp, double & d2p);
void acoustics_solution_i(const Vector & X, double & p,
Vector &dp, double & d2p);
double p_exact_r(const Vector &x);
double p_exact_i(const Vector &x);
void u_exact_r(const Vector &x, Vector & u);
void u_exact_i(const Vector &x, Vector & u);
double rhs_func_r(const Vector &x);
double rhs_func_i(const Vector &x);
void gradp_exact_r(const Vector &x, Vector &gradu);
void gradp_exact_i(const Vector &x, Vector &gradu);
double divu_exact_r(const Vector &x);
double divu_exact_i(const Vector &x);
double d2_exact_r(const Vector &x);
double d2_exact_i(const Vector &x);
double hatp_exact_r(const Vector & X);
double hatp_exact_i(const Vector & X);
void hatu_exact(const Vector & X, Vector & hatu);
void hatu_exact_r(const Vector & X, Vector & hatu);
void hatu_exact_i(const Vector & X, Vector & hatu);
int dim;
double omega;
enum prob_type
{
plane_wave,
gaussian_beam
};
prob_type prob;
int main(int argc, char *argv[])
{
const char *mesh_file = "../../../data/inline-quad.mesh";
int order = 1;
int delta_order = 1;
bool visualization = true;
double rnum=1.0;
int ref = 1;
double theta = 0.0;
bool adjoint_graph_norm = false;
bool static_cond = false;
int iprob = 0;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree)");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&rnum, "-rnum", "--number_of_wavelenths",
"Number of wavelengths");
args.AddOption(&iprob, "-prob", "--problem", "Problem case"
" 0: plane wave, 1: Gaussian beam");
args.AddOption(&delta_order, "-do", "--delta_order",
"Order enrichment for DPG test space.");
args.AddOption(&theta, "-theta", "--theta",
"Theta parameter for AMR");
args.AddOption(&adjoint_graph_norm, "-graph-norm", "--adjoint-graph-norm",
"-no-graph-norm", "--no-adjoint-graph-norm",
"Enable or disable Adjoint Graph Norm on the test space");
args.AddOption(&ref, "-ref", "--serial_ref",
"Number of serial refinements.");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
if (iprob > 1) { iprob = 0; }
prob = (prob_type)iprob;
omega = 2.*M_PI*rnum;
Mesh mesh(mesh_file, 1, 1);
dim = mesh.Dimension();
// Define spaces
// L2 space for p
FiniteElementCollection *p_fec = new L2_FECollection(order-1,dim);
FiniteElementSpace *p_fes = new FiniteElementSpace(&mesh,p_fec);
// Vector L2 space for u
FiniteElementCollection *u_fec = new L2_FECollection(order-1,dim);
FiniteElementSpace *u_fes = new FiniteElementSpace(&mesh,u_fec, dim);
// H^1/2 space for p̂
FiniteElementCollection * hatp_fec = new H1_Trace_FECollection(order,dim);
FiniteElementSpace *hatp_fes = new FiniteElementSpace(&mesh,hatp_fec);
// H^-1/2 space for û
FiniteElementCollection * hatu_fec = new RT_Trace_FECollection(order-1,dim);
FiniteElementSpace *hatu_fes = new FiniteElementSpace(&mesh,hatu_fec);
// testspace fe collections
int test_order = order+delta_order;
FiniteElementCollection * q_fec = new H1_FECollection(test_order, dim);
FiniteElementCollection * v_fec = new RT_FECollection(test_order-1, dim);
mfem::out << "p_fes space true dofs = " << p_fes->GetTrueVSize() << endl;
mfem::out << "u_fes space true dofs = " << u_fes->GetTrueVSize() << endl;
mfem::out << "hatp_fes space true dofs = " << hatp_fes->GetTrueVSize() << endl;
mfem::out << "hatu_fes space true dofs = " << hatu_fes->GetTrueVSize() << endl;
// Coefficients
ConstantCoefficient one(1.0);
ConstantCoefficient zero(0.0);
Vector vec0(dim); vec0 = 0.;
VectorConstantCoefficient vzero(vec0);
ConstantCoefficient negone(-1.0);
ConstantCoefficient omeg(omega);
ConstantCoefficient omeg2(omega*omega);
ConstantCoefficient negomeg(-omega);
// Normal equation weak formulation
Array<FiniteElementSpace * > trial_fes;
Array<FiniteElementCollection * > test_fec;
trial_fes.Append(p_fes);
trial_fes.Append(u_fes);
trial_fes.Append(hatp_fes);
trial_fes.Append(hatu_fes);
test_fec.Append(q_fec);
test_fec.Append(v_fec);
ComplexNormalEquations * a = new ComplexNormalEquations(trial_fes,test_fec);
a->StoreMatrices();
// i ω (p,q)
a->AddTrialIntegrator(nullptr,new MixedScalarMassIntegrator(omeg),0,0);
// -(u , ∇ q)
a->AddTrialIntegrator(new TransposeIntegrator(new GradientIntegrator(negone)),nullptr,1,0);
// -(p, ∇⋅v)
a->AddTrialIntegrator(new MixedScalarWeakGradientIntegrator(one),nullptr,0,1);
// i ω (u,v)
a->AddTrialIntegrator(nullptr,new TransposeIntegrator(new VectorFEMassIntegrator(omeg)),1,1);
// < p̂, v⋅n>
a->AddTrialIntegrator(new NormalTraceIntegrator,nullptr,2,1);
// < û,q >
a->AddTrialIntegrator(new TraceIntegrator,nullptr,3,0);
// for impedence condition (only on the boundary)
// TODO
// a->AddTrialIntegrator(new TraceIntegrator,nullptr,2,0);
// test integrators
//space-induced norm for H(div) × H1
// (∇q,∇δq)
a->AddTestIntegrator(new DiffusionIntegrator(one),nullptr,0,0);
// (q,δq)
a->AddTestIntegrator(new MassIntegrator(one),nullptr,0,0);
// (∇⋅v,∇⋅δv)
a->AddTestIntegrator(new DivDivIntegrator(one),nullptr,1,1);
// (v,δv)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),nullptr,1,1);
// additional integrators for the adjoint graph norm
if (adjoint_graph_norm)
{
// -i ω (∇q,δv)
a->AddTestIntegrator(nullptr,new MixedVectorGradientIntegrator(negomeg),0,1);
// i ω (v,∇ δq)
a->AddTestIntegrator(nullptr,new MixedVectorWeakDivergenceIntegrator(negomeg),1,0);
// ω^2 (v,δv)
a->AddTestIntegrator(new VectorFEMassIntegrator(omeg2),nullptr,1,1);
// - i ω (∇⋅v,δq)
a->AddTestIntegrator(nullptr,new VectorFEDivergenceIntegrator(negomeg),1,0);
// i ω (q,∇⋅v)
a->AddTestIntegrator(nullptr,new MixedScalarWeakGradientIntegrator(negomeg),0,1);
// ω^2 (q,δq)
a->AddTestIntegrator(new MassIntegrator(omeg2),nullptr,0,0);
}
// RHS
FunctionCoefficient f_rhs_r(rhs_func_r);
FunctionCoefficient f_rhs_i(rhs_func_i);
a->AddDomainLFIntegrator(new DomainLFIntegrator(f_rhs_r),new DomainLFIntegrator(f_rhs_i),0);
FunctionCoefficient hatpex_r(hatp_exact_r);
FunctionCoefficient hatpex_i(hatp_exact_i);
VectorFunctionCoefficient hatuex_r(dim,hatu_exact_r);
VectorFunctionCoefficient hatuex_i(dim,hatu_exact_i);
Array<int> elements_to_refine;
socketstream p_out_r;
socketstream p_out_i;
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
p_out_r.open(vishost, visport);
p_out_i.open(vishost, visport);
}
double res0 = 0.;
double err0 = 0.;
int dof0;
mfem::out << " Refinement |"
<< " Dofs |"
<< " L2 Error |"
<< " Relative % |"
<< " Rate |"
<< " Residual |"
<< " Rate |" << endl;
mfem::out << " --------------------"
<< "-------------------"
<< "-------------------"
<< "-------------------" << endl;
for (int i = 0; i<ref; i++)
{
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
Array<int> ess_tdof_list;
Array<int> ess_bdr;
if (mesh.bdr_attributes.Size())
{
ess_bdr.SetSize(mesh.bdr_attributes.Max());
ess_bdr = 1;
// ess_bdr[1] = 0;
// ess_bdr[2] = 1;
hatp_fes->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
// hatu_fes->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// shift the ess_tdofs
for (int j = 0; j < ess_tdof_list.Size(); j++)
{
ess_tdof_list[j] += p_fes->GetTrueVSize() + u_fes->GetTrueVSize();
// + hatp_fes->GetTrueVSize();
}
Array<int> offsets(5);
offsets[0] = 0;
offsets[1] = p_fes->GetVSize();
offsets[2] = u_fes->GetVSize();
offsets[3] = hatp_fes->GetVSize();
offsets[4] = hatu_fes->GetVSize();
offsets.PartialSum();
Vector x(2*offsets.Last());
x = 0.;
double * xdata = x.GetData();
ComplexGridFunction hatp_gf(hatp_fes);
hatp_gf.real().MakeRef(hatp_fes,&xdata[offsets[2]]);
hatp_gf.imag().MakeRef(hatp_fes,&xdata[offsets.Last()+ offsets[2]]);
hatp_gf.ProjectBdrCoefficient(hatpex_r,hatpex_i, ess_bdr);
// ComplexGridFunction hatu_gf(hatu_fes);
// hatu_gf.real().MakeRef(hatu_fes,&xdata[offsets[3]]);
// hatu_gf.imag().MakeRef(hatu_fes,&xdata[offsets.Last()+ offsets[3]]);
// hatu_gf.ProjectBdrCoefficientNormal(hatuex_r,hatuex_i, ess_bdr);
OperatorPtr Ah;
Vector X,B;
a->FormLinearSystem(ess_tdof_list,x,Ah, X,B);
ComplexOperator * Ahc = Ah.As<ComplexOperator>();
SparseMatrix * Ar = dynamic_cast<BlockMatrix *>(&Ahc->real())->CreateMonolithic();
SparseMatrix * Ai = dynamic_cast<BlockMatrix *>(&Ahc->imag())->CreateMonolithic();
ComplexSparseMatrix Ac(Ar,Ai,true,true);
SparseMatrix * A = Ac.GetSystemMatrix();
mfem::out << "Size of the linear system: " << A->Height() << std::endl;
UMFPackSolver umf(*A);
umf.Mult(B,X);
delete A;
a->RecoverFEMSolution(X,x);
Vector & residuals = a->ComputeResidual(x);
double residual = residuals.Norml2();
elements_to_refine.SetSize(0);
double max_resid = residuals.Max();
for (int iel = 0; iel<mesh.GetNE(); iel++)
{
if (residuals[iel] > theta * max_resid)
{
elements_to_refine.Append(iel);
}
}
ComplexGridFunction p(p_fes);
p.real().MakeRef(p_fes,x.GetData());
p.imag().MakeRef(p_fes,&x.GetData()[offsets.Last()]);
ComplexGridFunction pgf_ex(p_fes);
FunctionCoefficient p_ex_r(p_exact_r);
FunctionCoefficient p_ex_i(p_exact_i);
pgf_ex.ProjectCoefficient(p_ex_r, p_ex_i);
int dofs = X.Size()/2;
double p_err_r = p.real().ComputeL2Error(p_ex_r);
double p_err_i = p.imag().ComputeL2Error(p_ex_i);
double L2Error = sqrt(p_err_r*p_err_r + p_err_i*p_err_i);
double rate_err = (i) ? dim*log(err0/L2Error)/log((double)dof0/dofs) : 0.0;
double rate_res = (i) ? dim*log(res0/residual)/log((double)dof0/dofs) : 0.0;
err0 = L2Error;
res0 = residual;
dof0 = dofs;
mfem::out << std::right << std::setw(11) << i << " | "
<< std::setw(10) << dof0 << " | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << err0 << " | "
<< std::setprecision(3)
<< std::setw(10) << std::fixed << 0.0 << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_err << " | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << res0 << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_res << " | "
<< std::resetiosflags(std::ios::showbase)
<< std::setw(10) << std::scientific
<< std::endl;
if (visualization)
{
p_out_r.precision(8);
p_out_r << "solution\n" << mesh << p.real() <<
"window_title 'Real Numerical presure' "
<< flush;
p_out_i.precision(8);
p_out_i << "solution\n" << mesh << p.imag() <<
"window_title 'Imag Numerical presure' "
<< flush;
}
if (i == ref)
break;
mesh.GeneralRefinement(elements_to_refine,1,1);
for (int i =0; i<trial_fes.Size(); i++)
{
trial_fes[i]->Update(false);
}
a->Update();
}
delete a;
delete q_fec;
delete v_fec;
delete hatp_fes;
delete hatp_fec;
delete hatu_fes;
delete hatu_fec;
delete u_fec;
delete p_fec;
delete u_fes;
delete p_fes;
return 0;
}
double p_exact_r(const Vector &x)
{
double p,d2p;
Vector dp;
acoustics_solution_r(x,p,dp,d2p);
return p;
}
double p_exact_i(const Vector &x)
{
double p,d2p;
Vector dp;
acoustics_solution_i(x,p,dp,d2p);
return p;
}
double hatp_exact_r(const Vector & X)
{
return p_exact_r(X);
}
double hatp_exact_i(const Vector & X)
{
return p_exact_i(X);
}
void gradp_exact_r(const Vector &x, Vector &grad)
{
grad.SetSize(x.Size());
double p,d2p;
acoustics_solution_r(x,p,grad,d2p);
}
void gradp_exact_i(const Vector &x, Vector &grad)
{
grad.SetSize(x.Size());
double p,d2p;
acoustics_solution_i(x,p,grad,d2p);
}
double d2_exact_r(const Vector &x)
{
double p,d2p;
Vector dp;
acoustics_solution_r(x,p,dp,d2p);
return d2p;
}
double d2_exact_i(const Vector &x)
{
double p,d2p;
Vector dp;
acoustics_solution_i(x,p,dp,d2p);
return d2p;
}
// u = - ∇ p / (i ω )
// = i (∇ p_r + i * ∇ p_i) / ω
// = - ∇ p_i / ω + i ∇ p_r / ω
void u_exact_r(const Vector &x, Vector & u)
{
gradp_exact_i(x,u);
u *= -1./omega;
}
void u_exact_i(const Vector &x, Vector & u)
{
gradp_exact_r(x,u);
u *= 1./omega;
}
void hatu_exact_r(const Vector & X, Vector & hatu)
{
u_exact_r(X,hatu);
}
void hatu_exact_i(const Vector & X, Vector & hatu)
{
u_exact_i(X,hatu);
}
// ∇⋅u = i Δ p / ω
// = i (Δ p_r + i * Δ p_i) / ω
// = - Δ p_i / ω + i Δ p_r / ω
double divu_exact_r(const Vector &x)
{
return -d2_exact_i(x)/omega;
}
double divu_exact_i(const Vector &x)
{
return d2_exact_r(x)/omega;
}
// f = ∇⋅u + i ω p
// f_r = ∇⋅u_r - ω p_i
double rhs_func_r(const Vector &x)
{
double p = p_exact_i(x);
double divu = divu_exact_r(x);
return divu - omega * p;
}
// f_i = ∇⋅u_i + ω p_r
double rhs_func_i(const Vector &x)
{
double p = p_exact_r(x);
double divu = divu_exact_i(x);
return divu + omega * p;
}
void acoustics_solution_r(const Vector & X, double & p,
Vector &dp, double & d2p)
{
complex<double> zp, d2zp;
vector<complex<double>> dzp;
acoustics_solution(X,zp,dzp,d2zp);
p = zp.real();
d2p = d2zp.real();
dp.SetSize(X.Size());
for (int i = 0; i<X.Size(); i++)
{
dp[i] = dzp[i].real();
}
}
void acoustics_solution_i(const Vector & X, double & p,
Vector &dp, double & d2p)
{
complex<double> zp, d2zp;
vector<complex<double>> dzp;
acoustics_solution(X,zp,dzp,d2zp);
p = zp.imag();
d2p = d2zp.imag();
dp.SetSize(X.Size());
for (int i = 0; i<X.Size(); i++)
{
dp[i] = dzp[i].imag();
}
}
void acoustics_solution(const Vector & X, complex<double> & p, vector<complex<double>> & dp,
complex<double> & d2p)
{
dp.resize(X.Size());
complex<double> zi = complex<double>(0., 1.);
switch (prob)
{
case plane_wave:
{
double beta = omega/std::sqrt((double)X.Size());
complex<double> alpha = beta * zi * X.Sum();
p = exp(-alpha);
d2p = - dim * beta * beta * p;
for (int i = 0; i<X.Size(); i++)
{
dp[i] = - zi * beta * p;
}
}
break;
default:
{
double rk = omega;
double alpha = 45 * M_PI/180.;
double sina = sin(alpha);
double cosa = cos(alpha);
// shift the origin
double xprim=X(0) + 0.1;
double yprim=X(1) + 0.1;
double x = xprim*sina - yprim*cosa;
double y = xprim*cosa + yprim*sina;
double dxdxprim = sina, dxdyprim = -cosa;
double dydxprim = cosa, dydyprim = sina;
//wavelength
double rl = 2.*M_PI/rk;
// beam waist radius
double w0 = 0.05;
// function w
double fact = rl/M_PI/(w0*w0);
double aux = 1. + (fact*y)*(fact*y);
double w = w0*sqrt(aux);
double dwdy = w0*fact*fact*y/sqrt(aux);
double d2wdydy = w0*fact*fact*(1. - (fact*y)*(fact*y)/aux)/sqrt(aux);
double phi0 = atan(fact*y);
double dphi0dy = cos(phi0)*cos(phi0)*fact;
double d2phi0dydy = -2.*cos(phi0)*sin(phi0)*fact*dphi0dy;
double r = y + 1./y/(fact*fact);
double drdy = 1. - 1./(y*y)/(fact*fact);
double d2rdydy = 2./(y*y*y)/(fact*fact);
// pressure
complex<double> zi = complex<double>(0., 1.);
complex<double> ze = - x*x/(w*w) - zi*rk*y - zi * M_PI * x * x/rl/r + zi*phi0/2.;
complex<double> zdedx = -2.*x/(w*w) - 2.*zi*M_PI*x/rl/r;
complex<double> zdedy = 2.*x*x/(w*w*w)*dwdy - zi*rk + zi*M_PI*x*x/rl/(r*r)*drdy + zi*dphi0dy/2.;
complex<double> zd2edxdx = -2./(w*w) - 2.*zi*M_PI/rl/r;
complex<double> zd2edxdy = 4.*x/(w*w*w)*dwdy + 2.*zi*M_PI*x/rl/(r*r)*drdy;
complex<double> zd2edydx = zd2edxdy;
complex<double> zd2edydy = -6.*x*x/(w*w*w*w)*dwdy*dwdy + 2.*x*x/(w*w*w)*d2wdydy - 2.*zi*M_PI*x*x/rl/(r*r*r)*drdy*drdy
+ zi*M_PI*x*x/rl/(r*r)*d2rdydy + zi/2.*d2phi0dydy;
double pf = pow(2.0/M_PI/(w*w),0.25);
double dpfdy = -pow(2./M_PI/(w*w),-0.75)/M_PI/(w*w*w)*dwdy;
double d2pfdydy = -1./M_PI*pow(2./M_PI,-0.75)*(-1.5*pow(w,-2.5)
*dwdy*dwdy + pow(w,-1.5)*d2wdydy);
complex<double> zp = pf*exp(ze);
complex<double> zdpdx = zp*zdedx;
complex<double> zdpdy = dpfdy*exp(ze)+zp*zdedy;
complex<double> zd2pdxdx = zdpdx*zdedx + zp*zd2edxdx;
complex<double> zd2pdxdy = zdpdy*zdedx + zp*zd2edxdy;
complex<double> zd2pdydx = dpfdy*exp(ze)*zdedx + zdpdx*zdedy + zp*zd2edydx;
complex<double> zd2pdydy = d2pfdydy*exp(ze) + dpfdy*exp(ze)*zdedy + zdpdy*zdedy + zp*zd2edydy;
p = zp;
dp[0] = (zdpdx*dxdxprim + zdpdy*dydxprim);
dp[1] = (zdpdx*dxdyprim + zdpdy*dydyprim);
d2p = (zd2pdxdx*dxdxprim + zd2pdydx*dydxprim)*dxdxprim + (zd2pdxdy*dxdxprim + zd2pdydy*dydxprim)*dydxprim
+ (zd2pdxdx*dxdyprim + zd2pdydx*dydyprim)*dxdyprim + (zd2pdxdy*dxdyprim + zd2pdydy*dydyprim)*dydyprim;
}
break;
}
}
+294
View File
@@ -0,0 +1,294 @@
// MFEM FOSLS acoustics Example
//
// Compile with: make fosls
//
// Definite/Indefinite Helmholtz
// - Δ p ± ω^2 p = f̃ , in Ω
// p = p_0, on ∂Ω
// First Order System
// ∇ p - ω u = 0, in Ω
// - ∇⋅u ± ω p = f, in Ω
// p = p_0, in ∂Ω
// where f:=f̃/ω
// FOSLS:
// minimize 1/2(||∇p - ω u||^2 + ||-∇⋅u ± ω p - f||^2)
// (p,u) ∈ H^1(Ω) × H(div,Ω)
// -------------------------------------------------------------------
// | | p | u | RHS |
// -------------------------------------------------------------------
// | q | (∇ p,∇ q) + ω^2(p,q) | ∓ ω (∇⋅u,q) - ω (u, ∇ q) | ± ω(f,q) |
// | | | | |
// | v | ∓ ω (p,∇⋅v) - ω (∇ p,v)| (∇⋅u,∇⋅v) + ω^2 (u,v) | -(f,∇⋅v) |
// where (q,v) ∈ H^1(Ω) × H(div,Ω)
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
// #define DEFINITE
double p_exact(const Vector &x);
void u_exact(const Vector &x, Vector & u);
double rhs_func(const Vector &x);
void gradp_exact(const Vector &x, Vector &gradu);
double divu_exact(const Vector &x);
double d2_exact(const Vector &x);
int dim;
double omega;
int main(int argc, char *argv[])
{
// 1. Parse command-line options.
const char *mesh_file = "../../../data/inline-quad.mesh";
int order = 1;
bool visualization = true;
double rnum=1.0;
int sr = 1;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree)");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&rnum, "-rnum", "--number_of_wavelenths",
"Number of wavelengths");
args.AddOption(&sr, "-sr", "--serial_ref",
"Number of serial refinements.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
omega = 2.0 * M_PI * rnum;
Mesh mesh(mesh_file, 1, 1);
dim = mesh.Dimension();
for (int i = 0; i < sr; i++ )
{
mesh.UniformRefinement();
}
FiniteElementCollection *H1fec = new H1_FECollection(order, dim);
FiniteElementCollection *RTfec = new RT_FECollection(order-1, dim);
FiniteElementSpace * H1fes = new FiniteElementSpace(&mesh, H1fec);
FiniteElementSpace * RTfes = new FiniteElementSpace(&mesh, RTfec);
Array<FiniteElementSpace *> fespaces(2);
fespaces[0] = H1fes;
fespaces[1] = RTfes;
Array<int> ess_bdr;
Array<int> ess_tdof_list;
if (mesh.bdr_attributes.Size())
{
ess_bdr.SetSize(mesh.bdr_attributes.Max());
ess_bdr = 1;
fespaces[0]->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
BlockBilinearForm a(fespaces);
a.SetDiagonalPolicy(mfem::Operator::DIAG_KEEP);
cout << "H1 fespace = " << H1fes->GetTrueVSize() << endl;
cout << "RT fespace = " << RTfes->GetTrueVSize() << endl;
ConstantCoefficient one(1.0);
ConstantCoefficient negone(-1.0);
ConstantCoefficient omeg(omega);
ConstantCoefficient negomeg(-omega);
ConstantCoefficient omeg2(omega*omega);
Array2D<BilinearFormIntegrator * > blfi(2,2);
// blfi(0,0) = (∇ p,∇ q) + ω^2(p,q)
SumIntegrator * integ00 = new SumIntegrator();
integ00->AddIntegrator(new DiffusionIntegrator(one));
integ00->AddIntegrator(new MassIntegrator(omeg2));
blfi(0,0) = integ00;
// blfi(0,1) = ∓ ω (∇⋅u,q) - ω (u, ∇ q)
SumIntegrator * integ01 = new SumIntegrator();
#ifdef DEFINITE
// -ω (∇⋅u,q)
integ01->AddIntegrator(new MixedScalarDivergenceIntegrator(negomeg));
#else
// ω (∇⋅u,q)
integ01->AddIntegrator(new MixedScalarDivergenceIntegrator(omeg));
#endif
// - ω (u, ∇ q)
integ01->AddIntegrator(new MixedVectorWeakDivergenceIntegrator(omeg));
blfi(0,1) = integ01;
// blfi(1,0) = ∓ ω (p,∇⋅v) - ω (∇ p,v)
SumIntegrator * integ10 = new SumIntegrator();
#ifdef DEFINITE
// - ω (p,∇⋅v)
integ10->AddIntegrator(new MixedScalarWeakGradientIntegrator(omeg));
#else
// ω (p,∇⋅v)
integ10->AddIntegrator(new MixedScalarWeakGradientIntegrator(negomeg));
#endif
// - ω (∇ p,v)
integ10->AddIntegrator(new MixedVectorGradientIntegrator(negomeg));
blfi(1,0) = integ10;
// blfi(1,1) = (∇⋅u,∇⋅v) + ω^2 (u,v)
SumIntegrator * integ11 = new SumIntegrator();
integ11->AddIntegrator(new DivDivIntegrator(one));
integ11->AddIntegrator(new VectorFEMassIntegrator(omeg2));
blfi(1,1) = integ11;
BlockLinearForm b(fespaces);
Array<LinearFormIntegrator * > lfi(2);
// ± ω (f,q)
FunctionCoefficient f_rhs(rhs_func);
#ifdef DEFINITE
ProductCoefficient w_f(omeg,f_rhs);
#else
ProductCoefficient w_f(negomeg,f_rhs);
#endif
// lfi[0] = new DomainLFIntegrator(w_f);
lfi[0] = new DomainLFIntegrator(w_f);
// -(f,∇⋅v)
ProductCoefficient neg_f(negone,f_rhs);
// lfi[1] = new VectorFEDomainLFDivIntegrator(f_rhs);
lfi[1] = new VectorFEDomainLFDivIntegrator(neg_f);
TestBlockBilinearFormIntegrator * integ = new TestBlockBilinearFormIntegrator();
integ->SetIntegrators(blfi);
a.AddDomainIntegrator(integ);
a.Assemble();
TestBlockLinearFormIntegrator * lininteg = new TestBlockLinearFormIntegrator();
lininteg->SetIntegrators(lfi);
b.AddDomainIntegrator(lininteg);
b.Assemble();
int size = 0;
for (int i = 0; i<fespaces.Size(); i++)
{
size += fespaces[i]->GetVSize();
}
Vector x(size);
x = 0.0;
FunctionCoefficient p_ex(p_exact);
VectorFunctionCoefficient gradp_ex(dim,gradp_exact);
VectorFunctionCoefficient u_ex(dim,u_exact);
FunctionCoefficient divu_ex(divu_exact);
GridFunction p_gf, u_gf;
GridFunction pex_gf(H1fes);
p_gf.MakeRef(H1fes,x,0);
// p_gf.ProjectBdrCoefficient(p_ex,ess_bdr);
p_gf.ProjectCoefficient(p_ex);
pex_gf.ProjectCoefficient(p_ex);
u_gf.MakeRef(RTfes,x,H1fes->GetVSize());
u_gf = 0.;
OperatorPtr A;
Vector X,B;
a.FormLinearSystem(ess_tdof_list,x,b,A,X,B);
GSSmoother M((SparseMatrix&)(*A));
CGSolver cg;
cg.SetRelTol(1e-10);
cg.SetMaxIter(2000);
cg.SetPrintLevel(1);
cg.SetPreconditioner(M);
cg.SetOperator(*A);
cg.Mult(B, X);
a.RecoverFEMSolution(X,b,x);
p_gf.MakeRef(H1fes,x,0);
u_gf.MakeRef(RTfes,x,H1fes->GetVSize());
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream solu_sock(vishost, visport);
solu_sock.precision(8);
solu_sock << "solution\n" << mesh << p_gf <<
"window_title 'Numerical p' "
<< flush;
// socketstream sols_sock(vishost, visport);
// sols_sock.precision(8);
// sols_sock << "solution\n" << mesh << u_gf <<
// "window_title 'Numerical sigma' "
// << flush;
socketstream solex_sock(vishost, visport);
solex_sock.precision(8);
solex_sock << "solution\n" << mesh << pex_gf <<
"window_title 'Exact p' "
<< flush;
}
return 0;
}
double rhs_func(const Vector &x)
{
double p = p_exact(x);
double divu = divu_exact(x);
// f = - ∇⋅u ± ω p,
#ifdef DEFINITE
return -divu + omega * p;
#else
return -divu - omega * p;
#endif
}
double p_exact(const Vector &x)
{
return sin(omega*x.Sum());
}
void gradp_exact(const Vector &x, Vector &grad)
{
grad.SetSize(x.Size());
grad = omega * cos(omega * x.Sum());
}
void u_exact(const Vector &x, Vector & u)
{
gradp_exact(x,u);
u *= 1./omega;
}
double divu_exact(const Vector &x)
{
return d2_exact(x)/omega;
}
double d2_exact(const Vector &x)
{
return -dim * omega * omega * sin(omega*x.Sum());
}
+59
View File
@@ -0,0 +1,59 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Use the MFEM build directory
MFEM_DIR ?= ../../..
MFEM_BUILD_DIR ?= ../../..
SRC = $(if $(MFEM_DIR:../../..=),$(MFEM_DIR)/examples/dpg_tests/acoustics,)
CONFIG_MK = $(MFEM_BUILD_DIR)/config/config.mk
MFEM_LIB_FILE = mfem_is_not_built
-include $(CONFIG_MK)
SEQ_EXAMPLES = fosls uw_dpg strong_dpg complex_uw_dpg
PAR_EXAMPLES = uw_dpgp
ifeq ($(MFEM_USE_MPI),NO)
EXAMPLES = $(SEQ_EXAMPLES)
else
EXAMPLES = $(PAR_EXAMPLES) $(SEQ_EXAMPLES)
endif
.SUFFIXES:
.SUFFIXES: .o .cpp .mk
.PHONY: all clean clean-build clean-exec
# Remove built-in rule
%: %.cpp
# Replace the default implicit rule for *.cpp files
%: $(SRC)%.cpp $(MFEM_LIB_FILE) $(CONFIG_MK)
$(MFEM_CXX) $(MFEM_FLAGS) $< -o $@ $(MFEM_LIBS)
all: $(EXAMPLES)
MFEM_TESTS = EXAMPLES
include $(MFEM_TEST_MK)
# Testing: Parallel vs. serial runs
RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
%-test-par: %
@$(call mfem-test,$<, $(RUN_MPI), Parallel example)
%-test-seq: %
@$(call mfem-test,$<,, Serial example)
clean: clean-build clean-exec
clean-build:
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
rm -rf *.dSYM *.TVD.*breakpoints
clean-exec:
@@ -0,0 +1,837 @@
// MFEM Ultraweak DPG acoustics example
//
// Compile with: make pcomplex_uw_dpg
//
// sample runs
// ./pcomplex_uw_dpg -o 3 -m ../../../data/inline-quad.mesh -sref 2 -pref 3 -rnum 4.1 -prob 0 -sc -graph-norm
// - Δ p - ω^2 p = f̃ , in Ω
// p = p_0, on ∂Ω
// First Order System
// ∇ p + i ω u = 0, in Ω
// ∇⋅u + i ω p = f, in Ω
// p = p_0, in ∂Ω
// where f:=f̃/(i ω)
// UW-DPG:
//
// p ∈ L^2(Ω), u ∈ (L^2(Ω))^dim
// p̂ ∈ H^1/2(Ω), û ∈ H^-1/2(Ω)
// -(p, ∇⋅v) + i ω (u , v) + < p̂, v⋅n> = 0, ∀ v ∈ H(div,Ω)
// -(u , ∇ q) + i ω (p , q) + < û, q > = (f,q) ∀ q ∈ H^1(Ω)
// p̂ = p_0 on ∂Ω
// Note:
// p̂ := p on Γ_h (skeleton)
// û := u on Γ_h
// -------------------------------------------------------------
// | | p | u | p̂ | û | RHS |
// -------------------------------------------------------------
// | v | -(p, ∇⋅v) | i ω (u,v) | < p̂, v⋅n> | | |
// | | | | | | |
// | q | i ω (p,q) |-(u , ∇ q) | | < û,q > | (f,q) |
// where (q,v) ∈ H^1(Ω) × H(div,Ω)
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
void acoustics_solution(const Vector & X, complex<double> & p,
vector<complex<double>> &dp, complex<double> & d2p);
void acoustics_solution_r(const Vector & X, double & p,
Vector &dp, double & d2p);
void acoustics_solution_i(const Vector & X, double & p,
Vector &dp, double & d2p);
double p_exact_r(const Vector &x);
double p_exact_i(const Vector &x);
void u_exact_r(const Vector &x, Vector & u);
void u_exact_i(const Vector &x, Vector & u);
double rhs_func_r(const Vector &x);
double rhs_func_i(const Vector &x);
void gradp_exact_r(const Vector &x, Vector &gradu);
void gradp_exact_i(const Vector &x, Vector &gradu);
double divu_exact_r(const Vector &x);
double divu_exact_i(const Vector &x);
double d2_exact_r(const Vector &x);
double d2_exact_i(const Vector &x);
double hatp_exact_r(const Vector & X);
double hatp_exact_i(const Vector & X);
void hatu_exact(const Vector & X, Vector & hatu);
void hatu_exact_r(const Vector & X, Vector & hatu);
void hatu_exact_i(const Vector & X, Vector & hatu);
int dim;
double omega;
enum prob_type
{
plane_wave,
gaussian_beam
};
prob_type prob;
int main(int argc, char *argv[])
{
Mpi::Init();
int num_procs = Mpi::WorldSize();
int myid = Mpi::WorldRank();
Hypre::Init();
const char *mesh_file = "../../../data/inline-quad.mesh";
int order = 1;
int delta_order = 1;
bool visualization = true;
double rnum=1.0;
double theta = 0.0;
bool adjoint_graph_norm = false;
bool static_cond = false;
int iprob = 0;
int sr = 0;
int pr = 1;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree)");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&rnum, "-rnum", "--number_of_wavelenths",
"Number of wavelengths");
args.AddOption(&iprob, "-prob", "--problem", "Problem case"
" 0: plane wave, 1: Gaussian beam");
args.AddOption(&delta_order, "-do", "--delta_order",
"Order enrichment for DPG test space.");
args.AddOption(&theta, "-theta", "--theta",
"Theta parameter for AMR");
args.AddOption(&adjoint_graph_norm, "-graph-norm", "--adjoint-graph-norm",
"-no-graph-norm", "--no-adjoint-graph-norm",
"Enable or disable Adjoint Graph Norm on the test space");
args.AddOption(&sr, "-sref", "--serial_ref",
"Number of parallel refinements.");
args.AddOption(&pr, "-pref", "--parallel_ref",
"Number of parallel refinements.");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.Parse();
if (!args.Good())
{
if (myid == 0)
{
args.PrintUsage(cout);
}
return 1;
}
if (myid == 0)
{
args.PrintOptions(cout);
}
if (iprob > 1) { iprob = 0; }
prob = (prob_type)iprob;
omega = 2.*M_PI*rnum;
Mesh mesh(mesh_file, 1, 1);
for (int i = 0; i<sr; i++)
{
mesh.UniformRefinement();
}
dim = mesh.Dimension();
mesh.EnsureNCMesh();
ParMesh pmesh(MPI_COMM_WORLD, mesh);
mesh.Clear();
// Define spaces
// L2 space for p
FiniteElementCollection *p_fec = new L2_FECollection(order-1,dim);
ParFiniteElementSpace *p_fes = new ParFiniteElementSpace(&pmesh,p_fec);
// Vector L2 space for u
FiniteElementCollection *u_fec = new L2_FECollection(order-1,dim);
ParFiniteElementSpace *u_fes = new ParFiniteElementSpace(&pmesh,u_fec, dim);
// H^1/2 space for p̂
FiniteElementCollection * hatp_fec = new H1_Trace_FECollection(order,dim);
ParFiniteElementSpace *hatp_fes = new ParFiniteElementSpace(&pmesh,hatp_fec);
// H^-1/2 space for û
FiniteElementCollection * hatu_fec = new RT_Trace_FECollection(order-1,dim);
ParFiniteElementSpace *hatu_fes = new ParFiniteElementSpace(&pmesh,hatu_fec);
// testspace fe collections
int test_order = order+delta_order;
FiniteElementCollection * q_fec = new H1_FECollection(test_order, dim);
FiniteElementCollection * v_fec = new RT_FECollection(test_order-1, dim);
// if (myid == 0)
// {
// mfem::out << "p_fes space true dofs = " << p_fes->GetTrueVSize() << endl;
// mfem::out << "u_fes space true dofs = " << u_fes->GetTrueVSize() << endl;
// mfem::out << "hatp_fes space true dofs = " << hatp_fes->GetTrueVSize() << endl;
// mfem::out << "hatu_fes space true dofs = " << hatu_fes->GetTrueVSize() << endl;
// }
// Coefficients
ConstantCoefficient one(1.0);
ConstantCoefficient zero(0.0);
Vector vec0(dim); vec0 = 0.;
VectorConstantCoefficient vzero(vec0);
ConstantCoefficient negone(-1.0);
ConstantCoefficient omeg(omega);
ConstantCoefficient omeg2(omega*omega);
ConstantCoefficient negomeg(-omega);
// Normal equation weak formulation
Array<ParFiniteElementSpace * > trial_fes;
Array<FiniteElementCollection * > test_fec;
trial_fes.Append(p_fes);
trial_fes.Append(u_fes);
trial_fes.Append(hatp_fes);
trial_fes.Append(hatu_fes);
test_fec.Append(q_fec);
test_fec.Append(v_fec);
ComplexParNormalEquations * a = new ComplexParNormalEquations(trial_fes,test_fec);
a->StoreMatrices();
// i ω (p,q)
a->AddTrialIntegrator(nullptr,new MixedScalarMassIntegrator(omeg),0,0);
// -(u , ∇ q)
a->AddTrialIntegrator(new TransposeIntegrator(new GradientIntegrator(negone)),nullptr,1,0);
// -(p, ∇⋅v)
a->AddTrialIntegrator(new MixedScalarWeakGradientIntegrator(one),nullptr,0,1);
// i ω (u,v)
a->AddTrialIntegrator(nullptr,new TransposeIntegrator(new VectorFEMassIntegrator(omeg)),1,1);
// < p̂, v⋅n>
a->AddTrialIntegrator(new NormalTraceIntegrator,nullptr,2,1);
// < û,q >
a->AddTrialIntegrator(new TraceIntegrator,nullptr,3,0);
// test integrators
//space-induced norm for H(div) × H1
// (∇q,∇δq)
a->AddTestIntegrator(new DiffusionIntegrator(one),nullptr,0,0);
// (q,δq)
a->AddTestIntegrator(new MassIntegrator(one),nullptr,0,0);
// (∇⋅v,∇⋅δv)
a->AddTestIntegrator(new DivDivIntegrator(one),nullptr,1,1);
// (v,δv)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),nullptr,1,1);
// additional integrators for the adjoint graph norm
if (adjoint_graph_norm)
{
// -i ω (∇q,δv)
a->AddTestIntegrator(nullptr,new MixedVectorGradientIntegrator(negomeg),0,1);
// i ω (v,∇ δq)
a->AddTestIntegrator(nullptr,new MixedVectorWeakDivergenceIntegrator(negomeg),1,0);
// ω^2 (v,δv)
a->AddTestIntegrator(new VectorFEMassIntegrator(omeg2),nullptr,1,1);
// - i ω (∇⋅v,δq)
a->AddTestIntegrator(nullptr,new VectorFEDivergenceIntegrator(negomeg),1,0);
// i ω (q,∇⋅v)
a->AddTestIntegrator(nullptr,new MixedScalarWeakGradientIntegrator(negomeg),0,1);
// ω^2 (q,δq)
a->AddTestIntegrator(new MassIntegrator(omeg2),nullptr,0,0);
}
// RHS
FunctionCoefficient f_rhs_r(rhs_func_r);
FunctionCoefficient f_rhs_i(rhs_func_i);
a->AddDomainLFIntegrator(new DomainLFIntegrator(f_rhs_r),new DomainLFIntegrator(f_rhs_i),0);
FunctionCoefficient hatpex_r(hatp_exact_r);
FunctionCoefficient hatpex_i(hatp_exact_i);
VectorFunctionCoefficient hatuex_r(dim,hatu_exact_r);
VectorFunctionCoefficient hatuex_i(dim,hatu_exact_i);
Array<int> elements_to_refine;
socketstream p_out_r;
socketstream p_out_i;
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
p_out_r.open(vishost, visport);
p_out_i.open(vishost, visport);
}
double res0 = 0.;
double err0 = 0.;
int dof0;
if (myid == 0)
{
mfem::out << "\n Ref |"
<< " Mesh |"
<< " Dofs |"
<< " ω |"
<< " L2 Error |"
<< " Relative % |"
<< " Rate |"
<< " Residual |"
<< " Rate |"
<< " PCG it |"
<< " PCG time |" << endl;
mfem::out << " --------------------"
<< "---------------------"
<< "---------------------"
<< "---------------------"
<< "---------------------"
<< "-------------------" << endl;
}
for (int it = 0; it<pr; it++)
{
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
Array<int> ess_tdof_list;
Array<int> ess_bdr;
if (pmesh.bdr_attributes.Size())
{
ess_bdr.SetSize(pmesh.bdr_attributes.Max());
ess_bdr = 1;
// ess_bdr[1] = 0;
// ess_bdr[2] = 0;
hatp_fes->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
// hatu_fes->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// shift the ess_tdofs
for (int j = 0; j < ess_tdof_list.Size(); j++)
{
ess_tdof_list[j] += p_fes->GetTrueVSize() + u_fes->GetTrueVSize();
// + hatp_fes->GetTrueVSize();
}
Array<int> offsets(5);
offsets[0] = 0;
offsets[1] = p_fes->GetVSize();
offsets[2] = u_fes->GetVSize();
offsets[3] = hatp_fes->GetVSize();
offsets[4] = hatu_fes->GetVSize();
offsets.PartialSum();
Vector x(2*offsets.Last());
x = 0.;
double * xdata = x.GetData();
ParComplexGridFunction hatp_gf(hatp_fes);
hatp_gf.real().MakeRef(hatp_fes,&xdata[offsets[2]]);
hatp_gf.imag().MakeRef(hatp_fes,&xdata[offsets.Last()+ offsets[2]]);
hatp_gf.ProjectBdrCoefficient(hatpex_r,hatpex_i, ess_bdr);
// ParComplexGridFunction hatu_gf(hatu_fes);
// hatu_gf.real().MakeRef(hatu_fes,&xdata[offsets[3]]);
// hatu_gf.imag().MakeRef(hatu_fes,&xdata[offsets.Last()+ offsets[3]]);
// hatu_gf.ProjectCoefficientNormal(hatuex_r,hatuex_i, ess_bdr);
OperatorPtr Ah;
Vector X,B;
a->FormLinearSystem(ess_tdof_list,x,Ah, X,B);
ComplexOperator * Ahc = Ah.As<ComplexOperator>();
BlockOperator * BlockA_r = dynamic_cast<BlockOperator *>(&Ahc->real());
BlockOperator * BlockA_i = dynamic_cast<BlockOperator *>(&Ahc->imag());
int num_blocks = BlockA_r->NumRowBlocks();
Array<int> tdof_offsets(2*num_blocks+1);
tdof_offsets[0] = 0;
int skip = (static_cond) ? 0 : 2;
int k = (static_cond) ? 2 : 0;
for (int i=0; i<num_blocks;i++)
{
tdof_offsets[i+1] = trial_fes[i+k]->GetTrueVSize();
tdof_offsets[num_blocks+i+1] = trial_fes[i+k]->GetTrueVSize();
}
tdof_offsets.PartialSum();
BlockOperator blockA(tdof_offsets);
for (int i = 0; i<num_blocks; i++)
{
for (int j = 0; j<num_blocks; j++)
{
blockA.SetBlock(i,j,&BlockA_r->GetBlock(i,j));
blockA.SetBlock(i,j+num_blocks,&BlockA_i->GetBlock(i,j), -1.0);
blockA.SetBlock(i+num_blocks,j+num_blocks,&BlockA_r->GetBlock(i,j));
blockA.SetBlock(i+num_blocks,j,&BlockA_i->GetBlock(i,j));
}
}
X = 0.;
BlockDiagonalPreconditioner * M = new BlockDiagonalPreconditioner(tdof_offsets);
if (!static_cond)
{
HypreBoomerAMG * solver_p = new HypreBoomerAMG((HypreParMatrix &)BlockA_r->GetBlock(0,0));
solver_p->SetPrintLevel(0);
solver_p->SetSystemsOptions(dim);
HypreBoomerAMG * solver_u = new HypreBoomerAMG((HypreParMatrix &)BlockA_r->GetBlock(1,1));
solver_u->SetPrintLevel(0);
solver_u->SetSystemsOptions(dim);
M->SetDiagonalBlock(0,solver_p);
M->SetDiagonalBlock(1,solver_u);
M->SetDiagonalBlock(num_blocks,solver_p);
M->SetDiagonalBlock(num_blocks+1,solver_u);
}
HypreBoomerAMG * solver_hatp = new HypreBoomerAMG((HypreParMatrix &)BlockA_r->GetBlock(skip,skip));
// amg->SetCycleNumSweeps(5, 5);
solver_hatp->SetPrintLevel(0);
HypreSolver * solver_hatu = nullptr;
if (dim == 2)
{
solver_hatu = new HypreAMS((HypreParMatrix &)BlockA_r->GetBlock(skip+1,skip+1),hatu_fes);
dynamic_cast<HypreAMS*>(solver_hatu)->SetPrintLevel(0);
}
else
{
solver_hatu = new HypreADS((HypreParMatrix &)BlockA_r->GetBlock(skip+1,skip+1), hatu_fes);
dynamic_cast<HypreAMS*>(solver_hatu)->SetPrintLevel(0);
}
M->SetDiagonalBlock(skip,solver_hatp);
M->SetDiagonalBlock(skip+1,solver_hatu);
M->SetDiagonalBlock(skip+num_blocks,solver_hatp);
M->SetDiagonalBlock(skip+num_blocks+1,solver_hatu);
StopWatch chrono;
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-7);
cg.SetAbsTol(1e-7);
cg.SetMaxIter(10000);
cg.SetPrintLevel(0);
cg.SetPreconditioner(*M);
cg.SetOperator(blockA);
chrono.Clear();
chrono.Start();
cg.Mult(B, X);
chrono.Stop();
delete M;
int ne = pmesh.GetNE();
MPI_Allreduce(MPI_IN_PLACE,&ne,1,MPI_INT,MPI_SUM,MPI_COMM_WORLD);
int ne_x = (dim == 2) ? (int)sqrt(ne) : (int)cbrt(ne);
ostringstream oss;
double pcg_time = chrono.RealTime();
if (myid == 0)
{
if (dim == 2)
{
oss << ne_x << " x " << ne_x ;
}
else
{
oss << ne_x << " x " << ne_x << " x " << ne_x ;
}
}
int num_iter = cg.GetNumIterations();
a->RecoverFEMSolution(X,x);
Vector & residuals = a->ComputeResidual(x);
double residual = residuals.Norml2();
double maxresidual = residuals.Max();
double globalresidual = residual * residual;
MPI_Allreduce(MPI_IN_PLACE,&maxresidual,1,MPI_DOUBLE,MPI_MAX,MPI_COMM_WORLD);
MPI_Allreduce(MPI_IN_PLACE,&globalresidual,1,MPI_DOUBLE,MPI_SUM,MPI_COMM_WORLD);
globalresidual = sqrt(globalresidual);
elements_to_refine.SetSize(0);
for (int iel = 0; iel<pmesh.GetNE(); iel++)
{
if (residuals[iel] > theta * maxresidual)
{
elements_to_refine.Append(iel);
}
}
ParComplexGridFunction p(p_fes);
p.real().MakeRef(p_fes,x.GetData());
p.imag().MakeRef(p_fes,&x.GetData()[offsets.Last()]);
ParComplexGridFunction u(u_fes);
u.real().MakeRef(u_fes,&x.GetData()[offsets[1]]);
u.imag().MakeRef(u_fes,&x.GetData()[offsets.Last()+offsets[1]]);
// Error in pressure
ParComplexGridFunction pgf_ex(p_fes);
FunctionCoefficient p_ex_r(p_exact_r);
FunctionCoefficient p_ex_i(p_exact_i);
pgf_ex.ProjectCoefficient(p_ex_r, p_ex_i);
double p_err_r = p.real().ComputeL2Error(p_ex_r);
double p_err_i = p.imag().ComputeL2Error(p_ex_i);
double p_error = sqrt(p_err_r*p_err_r + p_err_i*p_err_i);
double p_norm_r = pgf_ex.real().ComputeL2Error(zero);
double p_norm_i = pgf_ex.imag().ComputeL2Error(zero);
double p_norm = sqrt(p_norm_r*p_norm_r + p_norm_i*p_norm_i);
// Error in velocity
ParComplexGridFunction ugf_ex(u_fes);
VectorFunctionCoefficient u_ex_r(dim,u_exact_r);
VectorFunctionCoefficient u_ex_i(dim,u_exact_i);
double u_err_r = u.real().ComputeL2Error(u_ex_r);
double u_err_i = u.imag().ComputeL2Error(u_ex_i);
double u_error = sqrt(u_err_r*u_err_r + u_err_i*u_err_i);
double u_norm_r = pgf_ex.real().ComputeL2Error(vzero);
double u_norm_i = pgf_ex.imag().ComputeL2Error(vzero);
double u_norm = sqrt(u_norm_r*u_norm_r + u_norm_i*u_norm_i);
double L2Error = sqrt(p_error*p_error + u_error*u_error);
double L2norm = sqrt(p_norm*p_norm + u_norm*u_norm);
double rel_err = L2Error/L2norm;
int dofs = p_fes->GlobalTrueVSize()
+ u_fes->GlobalTrueVSize()
+ hatp_fes->GlobalTrueVSize()
+ hatu_fes->GlobalTrueVSize();
double rate_err = (it) ? dim*log(err0/rel_err)/log((double)dof0/dofs) : 0.0;
double rate_res = (it) ? dim*log(res0/globalresidual)/log((double)dof0/dofs) : 0.0;
err0 = rel_err;
res0 = globalresidual;
dof0 = dofs;
if (myid == 0)
{
mfem::out << std::right << std::setw(5) << it << " | "
<< std::setw(16) << oss.str() << " | "
<< std::setw(10) << dof0 << " | "
<< std::setprecision(0) << std::fixed
<< std::setw(2) << 2*rnum << " π | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << err0 << " | "
<< std::setprecision(3)
<< std::setw(10) << std::fixed << rel_err * 100. << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_err << " | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << res0 << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_res << " | "
<< std::setw(6) << std::fixed << num_iter << " | "
<< std::setprecision(5)
<< std::setw(8) << std::fixed << pcg_time << " | "
<< std::scientific
<< std::endl;
}
if (visualization)
{
p_out_r << "parallel " << num_procs << " " << myid << "\n";
p_out_r.precision(8);
p_out_r << "solution\n" << pmesh << p.real() <<
"window_title 'Real Numerical presure' "
<< flush;
p_out_i << "parallel " << num_procs << " " << myid << "\n";
p_out_i.precision(8);
p_out_i << "solution\n" << pmesh << p.imag() <<
"window_title 'Imag Numerical presure' "
<< flush;
}
if (it == pr)
break;
pmesh.GeneralRefinement(elements_to_refine,1,1);
for (int i =0; i<trial_fes.Size(); i++)
{
trial_fes[i]->Update(false);
}
a->Update();
}
delete a;
delete q_fec;
delete v_fec;
delete hatp_fes;
delete hatp_fec;
delete hatu_fes;
delete hatu_fec;
delete u_fec;
delete p_fec;
delete u_fes;
delete p_fes;
return 0;
}
double p_exact_r(const Vector &x)
{
double p,d2p;
Vector dp;
acoustics_solution_r(x,p,dp,d2p);
return p;
}
double p_exact_i(const Vector &x)
{
double p,d2p;
Vector dp;
acoustics_solution_i(x,p,dp,d2p);
return p;
}
double hatp_exact_r(const Vector & X)
{
return p_exact_r(X);
}
double hatp_exact_i(const Vector & X)
{
return p_exact_i(X);
}
void gradp_exact_r(const Vector &x, Vector &grad)
{
grad.SetSize(x.Size());
double p,d2p;
acoustics_solution_r(x,p,grad,d2p);
}
void gradp_exact_i(const Vector &x, Vector &grad)
{
grad.SetSize(x.Size());
double p,d2p;
acoustics_solution_i(x,p,grad,d2p);
}
double d2_exact_r(const Vector &x)
{
double p,d2p;
Vector dp;
acoustics_solution_r(x,p,dp,d2p);
return d2p;
}
double d2_exact_i(const Vector &x)
{
double p,d2p;
Vector dp;
acoustics_solution_i(x,p,dp,d2p);
return d2p;
}
// u = - ∇ p / (i ω )
// = i (∇ p_r + i * ∇ p_i) / ω
// = - ∇ p_i / ω + i ∇ p_r / ω
void u_exact_r(const Vector &x, Vector & u)
{
gradp_exact_i(x,u);
u *= -1./omega;
}
void u_exact_i(const Vector &x, Vector & u)
{
gradp_exact_r(x,u);
u *= 1./omega;
}
void hatu_exact_r(const Vector & X, Vector & hatu)
{
u_exact_r(X,hatu);
}
void hatu_exact_i(const Vector & X, Vector & hatu)
{
u_exact_i(X,hatu);
}
// ∇⋅u = i Δ p / ω
// = i (Δ p_r + i * Δ p_i) / ω
// = - Δ p_i / ω + i Δ p_r / ω
double divu_exact_r(const Vector &x)
{
return -d2_exact_i(x)/omega;
}
double divu_exact_i(const Vector &x)
{
return d2_exact_r(x)/omega;
}
// f = ∇⋅u + i ω p
// f_r = ∇⋅u_r - ω p_i
double rhs_func_r(const Vector &x)
{
double p = p_exact_i(x);
double divu = divu_exact_r(x);
return divu - omega * p;
}
// f_i = ∇⋅u_i + ω p_r
double rhs_func_i(const Vector &x)
{
double p = p_exact_r(x);
double divu = divu_exact_i(x);
return divu + omega * p;
}
void acoustics_solution_r(const Vector & X, double & p,
Vector &dp, double & d2p)
{
complex<double> zp, d2zp;
vector<complex<double>> dzp;
acoustics_solution(X,zp,dzp,d2zp);
p = zp.real();
d2p = d2zp.real();
dp.SetSize(X.Size());
for (int i = 0; i<X.Size(); i++)
{
dp[i] = dzp[i].real();
}
}
void acoustics_solution_i(const Vector & X, double & p,
Vector &dp, double & d2p)
{
complex<double> zp, d2zp;
vector<complex<double>> dzp;
acoustics_solution(X,zp,dzp,d2zp);
p = zp.imag();
d2p = d2zp.imag();
dp.SetSize(X.Size());
for (int i = 0; i<X.Size(); i++)
{
dp[i] = dzp[i].imag();
}
}
void acoustics_solution(const Vector & X, complex<double> & p, vector<complex<double>> & dp,
complex<double> & d2p)
{
dp.resize(X.Size());
complex<double> zi = complex<double>(0., 1.);
switch (prob)
{
case plane_wave:
{
double beta = omega/std::sqrt((double)X.Size());
complex<double> alpha = beta * zi * X.Sum();
p = exp(-alpha);
d2p = - dim * beta * beta * p;
for (int i = 0; i<X.Size(); i++)
{
dp[i] = - zi * beta * p;
}
}
break;
default:
{
double rk = omega;
double alpha = 45 * M_PI/180.;
double sina = sin(alpha);
double cosa = cos(alpha);
// shift the origin
double xprim=X(0) + 0.1;
double yprim=X(1) + 0.1;
double x = xprim*sina - yprim*cosa;
double y = xprim*cosa + yprim*sina;
double dxdxprim = sina, dxdyprim = -cosa;
double dydxprim = cosa, dydyprim = sina;
//wavelength
double rl = 2.*M_PI/rk;
// beam waist radius
double w0 = 0.05;
// function w
double fact = rl/M_PI/(w0*w0);
double aux = 1. + (fact*y)*(fact*y);
double w = w0*sqrt(aux);
double dwdy = w0*fact*fact*y/sqrt(aux);
double d2wdydy = w0*fact*fact*(1. - (fact*y)*(fact*y)/aux)/sqrt(aux);
double phi0 = atan(fact*y);
double dphi0dy = cos(phi0)*cos(phi0)*fact;
double d2phi0dydy = -2.*cos(phi0)*sin(phi0)*fact*dphi0dy;
double r = y + 1./y/(fact*fact);
double drdy = 1. - 1./(y*y)/(fact*fact);
double d2rdydy = 2./(y*y*y)/(fact*fact);
// pressure
complex<double> ze = - x*x/(w*w) - zi*rk*y - zi * M_PI * x * x/rl/r + zi*phi0/2.;
complex<double> zdedx = -2.*x/(w*w) - 2.*zi*M_PI*x/rl/r;
complex<double> zdedy = 2.*x*x/(w*w*w)*dwdy - zi*rk + zi*M_PI*x*x/rl/(r*r)*drdy + zi*dphi0dy/2.;
complex<double> zd2edxdx = -2./(w*w) - 2.*zi*M_PI/rl/r;
complex<double> zd2edxdy = 4.*x/(w*w*w)*dwdy + 2.*zi*M_PI*x/rl/(r*r)*drdy;
complex<double> zd2edydx = zd2edxdy;
complex<double> zd2edydy = -6.*x*x/(w*w*w*w)*dwdy*dwdy + 2.*x*x/(w*w*w)*d2wdydy - 2.*zi*M_PI*x*x/rl/(r*r*r)*drdy*drdy
+ zi*M_PI*x*x/rl/(r*r)*d2rdydy + zi/2.*d2phi0dydy;
double pf = pow(2.0/M_PI/(w*w),0.25);
double dpfdy = -pow(2./M_PI/(w*w),-0.75)/M_PI/(w*w*w)*dwdy;
double d2pfdydy = -1./M_PI*pow(2./M_PI,-0.75)*(-1.5*pow(w,-2.5)
*dwdy*dwdy + pow(w,-1.5)*d2wdydy);
complex<double> zp = pf*exp(ze);
complex<double> zdpdx = zp*zdedx;
complex<double> zdpdy = dpfdy*exp(ze)+zp*zdedy;
complex<double> zd2pdxdx = zdpdx*zdedx + zp*zd2edxdx;
complex<double> zd2pdxdy = zdpdy*zdedx + zp*zd2edxdy;
complex<double> zd2pdydx = dpfdy*exp(ze)*zdedx + zdpdx*zdedy + zp*zd2edydx;
complex<double> zd2pdydy = d2pfdydy*exp(ze) + dpfdy*exp(ze)*zdedy + zdpdy*zdedy + zp*zd2edydy;
p = zp;
dp[0] = (zdpdx*dxdxprim + zdpdy*dydxprim);
dp[1] = (zdpdx*dxdyprim + zdpdy*dydyprim);
d2p = (zd2pdxdx*dxdxprim + zd2pdydx*dydxprim)*dxdxprim + (zd2pdxdy*dxdxprim + zd2pdydy*dydxprim)*dydxprim
+ (zd2pdxdx*dxdyprim + zd2pdydx*dydyprim)*dxdyprim + (zd2pdxdy*dxdyprim + zd2pdydy*dydyprim)*dydyprim;
}
break;
}
}
+271
View File
@@ -0,0 +1,271 @@
// MFEM DPG_strong acoustics Example
//
// Compile with: make strong_dpg
//
// Definite/Indefinite Helmholtz
// - Δ p ± ω^2 p = f̃ , in Ω
// p = p_0, on ∂Ω
// First Order System
// ∇ p - ω u = 0, in Ω
// - ∇⋅u ± ω p = f, in Ω
// p = p_0, in ∂Ω
// where f:=f̃/ω
// Strong DPG formulation
// (p,u) ∈ H^1(Ω) × H(div,Ω)
//
// (∇ p, v) - ω (u,v) = 0, in Ω, ∀ v ∈ (L^2)^dim
// -(∇⋅u, q) ± ω (p,q) = (f,q), in Ω, ∀ q ∈ L^2
// p = p_0, in ∂Ω
//
// ------------------------------------
// | | p | u | RHS |
// ------------------------------------
// | q | ± ω (p,q) | -(∇⋅u,q) | (f,q) |
// | | | | |
// | v | (∇ p, v) | -ω (u,v) | |
// where (q,v) ∈ L^2 × (L^2)^dim
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
// #define DEFINITE
double p_exact(const Vector &x);
void u_exact(const Vector &x, Vector & u);
double rhs_func(const Vector &x);
void gradp_exact(const Vector &x, Vector &gradu);
double divu_exact(const Vector &x);
double d2_exact(const Vector &x);
int dim;
double omega;
int main(int argc, char *argv[])
{
// 1. Parse command-line options.
const char *mesh_file = "../../../data/inline-quad.mesh";
int order = 1;
int delta_order = 1;
bool visualization = true;
double rnum=1.0;
int ref = 1;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree)");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&rnum, "-rnum", "--number_of_wavelenths",
"Number of wavelengths");
args.AddOption(&delta_order, "-do", "--delta_order",
"Order enrichment for DPG test space.");
args.AddOption(&ref, "-ref", "--serial_ref",
"Number of serial refinements.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
omega = 2.0 * M_PI * rnum;
Mesh mesh(mesh_file, 1, 1);
dim = mesh.Dimension();
for (int i = 0; i < ref; i++ )
{
mesh.UniformRefinement();
}
// Define spaces
// H1 space for p
FiniteElementCollection *p_fec = new H1_FECollection(order, dim);
FiniteElementSpace * p_fes = new FiniteElementSpace(&mesh, p_fec);
// H(div) for u
FiniteElementCollection *u_fec = new RT_FECollection(order-1, dim);
FiniteElementSpace * u_fes = new FiniteElementSpace(&mesh, u_fec);
// testspace fe collections
int test_order = order+delta_order;
FiniteElementCollection * q_fec = new L2_FECollection(test_order-1, dim);
FiniteElementCollection * v_fec = new L2_FECollection(test_order-1, dim);
ConstantCoefficient one(1.0);
ConstantCoefficient negone(-1.0);
ConstantCoefficient omeg(omega);
ConstantCoefficient negomeg(-omega);
// Normal equation weak formulation
Array<FiniteElementSpace * > trial_fes;
Array<FiniteElementCollection * > test_fec;
trial_fes.Append(p_fes);
trial_fes.Append(u_fes);
test_fec.Append(q_fec);
test_fec.Append(v_fec);
NormalEquations * a = new NormalEquations(trial_fes,test_fec);
a->SetTestFECollVdim(1,dim);
a->StoreMatrices(true);
// ± ω (p, q)
#ifdef DEFINITE
// ω (p, q)
a->AddTrialIntegrator(new MassIntegrator(omeg),0,0);
#else
// -ω (p, q)
a->AddTrialIntegrator(new MassIntegrator(negomeg),0,0);
#endif
// -(∇⋅u, q)
a->AddTrialIntegrator(new MixedScalarDivergenceIntegrator(negone),1,0);
// -ω (u,v)
a->AddTrialIntegrator(new VectorFEMassIntegrator(negomeg),1,1);
// (∇ p, v)
a->AddTrialIntegrator(new GradientIntegrator(one),0,1);
// (v,δv)
a->AddTestIntegrator(new VectorMassIntegrator(one),1,1);
// (q,δq)
a->AddTestIntegrator(new MassIntegrator(one),0,0);
FunctionCoefficient f_rhs(rhs_func);
a->AddDomainLFIntegrator(new DomainLFIntegrator(f_rhs),0);
Array<int> ess_tdof_list;
Array<int> ess_bdr;
if (mesh.bdr_attributes.Size())
{
ess_bdr.SetSize(mesh.bdr_attributes.Max());
ess_bdr = 1;
p_fes->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
FunctionCoefficient p_ex(p_exact);
VectorFunctionCoefficient gradp_ex(dim,gradp_exact);
VectorFunctionCoefficient u_ex(dim,u_exact);
FunctionCoefficient divu_ex(divu_exact);
GridFunction p_gf, u_gf;
GridFunction pex_gf(p_fes);
Array<int> offsets(3);
offsets[0] = 0;
offsets[1] = p_fes->GetVSize();
offsets[2] = u_fes->GetVSize();
offsets.PartialSum();
BlockVector x(offsets);
x = 0.0;
p_gf.MakeRef(p_fes,x.GetBlock(0));
p_gf.ProjectBdrCoefficient(p_ex,ess_bdr);
u_gf.MakeRef(u_fes,x.GetBlock(1));
a->Assemble();
OperatorPtr Ah;
Vector X,B;
a->FormLinearSystem(ess_tdof_list,x,Ah,X,B);
BlockMatrix * A = Ah.As<BlockMatrix>();
BlockDiagonalPreconditioner * M = new BlockDiagonalPreconditioner(A->RowOffsets());
M->owns_blocks = 1;
for (int i=0; i<A->NumRowBlocks(); i++)
{
M->SetDiagonalBlock(i,new UMFPackSolver(A->GetBlock(i,i)));
}
CGSolver cg;
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(3);
cg.SetPreconditioner(*M);
cg.SetOperator(*A);
cg.Mult(B, X);
delete M;
a->RecoverFEMSolution(X,x);
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream p_out;
socketstream u_out;
p_out.open(vishost, visport);
u_out.open(vishost, visport);
p_out.precision(8);
p_out << "solution\n" << mesh << p_gf <<
"window_title 'Numerical p' "
<< flush;
u_out.precision(8);
u_out << "solution\n" << mesh << u_gf <<
"window_title 'Numerical flux' "
<< flush;
}
return 0;
}
double rhs_func(const Vector &x)
{
double p = p_exact(x);
double divu = divu_exact(x);
// f = - ∇⋅u ± ω p,
#ifdef DEFINITE
return -divu + omega * p;
#else
return -divu - omega * p;
#endif
}
double p_exact(const Vector &x)
{
return sin(omega*x.Sum());
}
void gradp_exact(const Vector &x, Vector &grad)
{
grad.SetSize(x.Size());
grad = omega * cos(omega * x.Sum());
}
void u_exact(const Vector &x, Vector & u)
{
gradp_exact(x,u);
u *= 1./omega;
}
double divu_exact(const Vector &x)
{
return d2_exact(x)/omega;
}
double d2_exact(const Vector &x)
{
return -dim * omega * omega * sin(omega*x.Sum());
}
+546
View File
@@ -0,0 +1,546 @@
// MFEM Ultraweak DPG acoustics example
//
// Compile with: make uw_dpg
//
// ./uw_dpg -m ../../../data/inline-quad.mesh -rnum 40 -theta 0.7 -prob 1 -graph-norm -ref 40 -o 3
// - Δ p ± ω^2 p = f̃ , in Ω
// p = p_0, on ∂Ω
// First Order System
// ∇ p - ω u = 0, in Ω
// - ∇⋅u ± ω p = f, in Ω
// p = p_0, in ∂Ω
// where f:=f̃/ω
// UW-DPG:
//
// p ∈ L^2(Ω), u ∈ (L^2(Ω))^dim
// p̂ ∈ H^1/2(Ω), û ∈ H^-1/2(Ω)
// -(p, ∇⋅v) - ω (u , v) + < p̂, v⋅n> = 0, ∀ v ∈ H(div,Ω)
// (u , ∇ q) ± ω (p , q) + < û, q > = (f,q) ∀ q ∈ H^1(Ω)
// p̂ = p_0 on ∂Ω
// Note:
// p̂ := p on Γ_h (skeleton)
// û := -u on Γ_h
// -------------------------------------------------------------
// | | p | u | p̂ | û | RHS |
// -------------------------------------------------------------
// | v | -(p, ∇⋅v) | - ω (u,v) | < p̂, v⋅n> | | |
// | | | | | | |
// | q | ± ω (p,q) | (u , ∇ q) | | < û,q > | (f,q) |
// where (q,v) ∈ H^1(Ω) × H(div,Ω)
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
// #define DEFINITE
void acoustics_solution(const Vector & X, double & p, Vector & dp, double & d2p);
double p_exact(const Vector &x);
void u_exact(const Vector &x, Vector & u);
double rhs_func(const Vector &x);
double divu_exact(const Vector &x);
double hatp_exact(const Vector & X);
void hatu_exact(const Vector & X, Vector & hatu);
int dim;
double omega;
enum prob_type
{
plane_wave,
gaussian_beam
};
prob_type prob;
int main(int argc, char *argv[])
{
const char *mesh_file = "../../../data/inline-quad.mesh";
int order = 1;
int delta_order = 1;
bool visualization = true;
double rnum=1.0;
int ref = 1;
double theta = 0.0;
bool adjoint_graph_norm = false;
int iprob = 0;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree)");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&rnum, "-rnum", "--number_of_wavelenths",
"Number of wavelengths");
args.AddOption(&delta_order, "-do", "--delta_order",
"Order enrichment for DPG test space.");
args.AddOption(&theta, "-theta", "--theta",
"Theta parameter for AMR");
args.AddOption(&iprob, "-prob", "--problem", "Problem case"
" 0: plane wave, 1: Gaussian beam");
args.AddOption(&adjoint_graph_norm, "-graph-norm", "--adjoint-graph-norm",
"-no-graph-norm", "--no-adjoint-graph-norm",
"Enable or disable Adjoint Graph Norm on the test space");
args.AddOption(&ref, "-ref", "--serial_ref",
"Number of serial refinements.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
if (iprob > 1) { iprob = 0; }
prob = (prob_type)iprob;
omega = 2.0 * M_PI * rnum;
Mesh mesh(mesh_file, 1, 1);
dim = mesh.Dimension();
// Define spaces
// L2 space for p
FiniteElementCollection *p_fec = new L2_FECollection(order-1,dim);
FiniteElementSpace *p_fes = new FiniteElementSpace(&mesh,p_fec);
// Vector L2 space for u
FiniteElementCollection *u_fec = new L2_FECollection(order-1,dim);
FiniteElementSpace *u_fes = new FiniteElementSpace(&mesh,u_fec, dim);
// H^1/2 space for p̂
FiniteElementCollection * hatp_fec = new H1_Trace_FECollection(order,dim);
FiniteElementSpace *hatp_fes = new FiniteElementSpace(&mesh,hatp_fec);
// H^-1/2 space for û
FiniteElementCollection * hatu_fec = new RT_Trace_FECollection(order-1,dim);
FiniteElementSpace *hatu_fes = new FiniteElementSpace(&mesh,hatu_fec);
// testspace fe collections
int test_order = order+delta_order;
FiniteElementCollection * q_fec = new H1_FECollection(test_order, dim);
FiniteElementCollection * v_fec = new RT_FECollection(test_order-1, dim);
// Coefficients
ConstantCoefficient one(1.0);
ConstantCoefficient zero(0.0);
Vector vec0(dim); vec0 = 0.;
VectorConstantCoefficient vzero(vec0);
ConstantCoefficient negone(-1.0);
ConstantCoefficient omeg(omega);
ConstantCoefficient omeg2(omega*omega);
ConstantCoefficient negomeg(-omega);
// Normal equation weak formulation
Array<FiniteElementSpace * > trial_fes;
Array<FiniteElementCollection * > test_fec;
trial_fes.Append(p_fes);
trial_fes.Append(u_fes);
trial_fes.Append(hatp_fes);
trial_fes.Append(hatu_fes);
test_fec.Append(q_fec);
test_fec.Append(v_fec);
NormalEquations * a = new NormalEquations(trial_fes,test_fec);
a->StoreMatrices(true);
// ± ω (p,q)
#ifdef DEFINITE
a->AddTrialIntegrator(new MixedScalarMassIntegrator(omeg),0,0);
#else
a->AddTrialIntegrator(new MixedScalarMassIntegrator(negomeg),0,0);
#endif
// (u , ∇ q)
a->AddTrialIntegrator(new TransposeIntegrator(new GradientIntegrator(one)),1,0);
// -(p, ∇⋅v)
a->AddTrialIntegrator(new MixedScalarWeakGradientIntegrator(one),0,1);
// - ω (u,v)
a->AddTrialIntegrator(new TransposeIntegrator(new VectorFEMassIntegrator(negomeg)),1,1);
// < p̂, v⋅n>
a->AddTrialIntegrator(new NormalTraceIntegrator,2,1);
// < û,q >
a->AddTrialIntegrator(new TraceIntegrator,3,0);
// test integrators
//space-induced norm for H(div) × H1
// (∇q,∇δq)
a->AddTestIntegrator(new DiffusionIntegrator(one),0,0);
// (q,δq)
a->AddTestIntegrator(new MassIntegrator(one),0,0);
// (∇⋅v,∇⋅δv)
a->AddTestIntegrator(new DivDivIntegrator(one),1,1);
// (v,δv)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),1,1);
// additional integrators for the adjoint graph norm
if (adjoint_graph_norm)
{
// -ω (∇q,δv)
a->AddTestIntegrator(new MixedVectorGradientIntegrator(negomeg),0,1);
// -ω (v,δq)
a->AddTestIntegrator(new MixedVectorWeakDivergenceIntegrator(omeg),1,0);
// ω^2 (v,δv)
a->AddTestIntegrator(new VectorFEMassIntegrator(omeg2),1,1);
#ifdef DEFINITE
// - ω (∇⋅v,δq)
a->AddTestIntegrator(new VectorFEDivergenceIntegrator(negomeg),1,0);
// - ω (q,∇⋅v)
a->AddTestIntegrator(new MixedScalarWeakGradientIntegrator(omeg),0,1);
#else
// ω (∇⋅v,δq)
a->AddTestIntegrator(new VectorFEDivergenceIntegrator(omeg),1,0);
// ω (q,∇⋅v)
a->AddTestIntegrator(new MixedScalarWeakGradientIntegrator(negomeg),0,1);
#endif
// ω^2 (q,δq)
a->AddTestIntegrator(new MassIntegrator(omeg2),0,0);
}
// RHS
FunctionCoefficient f_rhs(rhs_func);
a->AddDomainLFIntegrator(new DomainLFIntegrator(f_rhs),0);
FunctionCoefficient hatpex(hatp_exact);
FunctionCoefficient pex(p_exact);
VectorFunctionCoefficient uex(dim,u_exact);
Array<int> elements_to_refine;
GridFunction hatp_gf;
socketstream p_out;
// socketstream u_out;
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
p_out.open(vishost, visport);
// u_out.open(vishost, visport);
}
double res0 = 0.;
double err0 = 0.;
int dof0;
mfem::out << " Refinement |"
<< " Dofs |"
<< " L2 Error |"
<< " Relative % |"
<< " Rate |"
<< " Residual |"
<< " Rate |" << endl;
mfem::out << " --------------------"
<< "-------------------"
<< "-------------------"
<< "-------------------" << endl;
for (int i = 0; i<ref; i++)
{
a->Assemble();
Array<int> ess_tdof_list;
Array<int> ess_bdr;
if (mesh.bdr_attributes.Size())
{
ess_bdr.SetSize(mesh.bdr_attributes.Max());
ess_bdr = 1;
hatp_fes->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// shift the ess_tdofs
for (int i = 0; i < ess_tdof_list.Size(); i++)
{
ess_tdof_list[i] += p_fes->GetTrueVSize() + u_fes->GetTrueVSize();
}
Array<int> offsets(5);
offsets[0] = 0;
offsets[1] = p_fes->GetVSize();
offsets[2] = u_fes->GetVSize();
offsets[3] = hatp_fes->GetVSize();
offsets[4] = hatu_fes->GetVSize();
offsets.PartialSum();
BlockVector x(offsets);
x = 0.0;
hatp_gf.MakeRef(hatp_fes,x.GetBlock(2));
hatp_gf.ProjectBdrCoefficient(hatpex,ess_bdr);
OperatorPtr Ah;
Vector X,B;
a->FormLinearSystem(ess_tdof_list,x,Ah,X,B);
BlockMatrix * A = Ah.As<BlockMatrix>();
BlockDiagonalPreconditioner * M = new BlockDiagonalPreconditioner(A->RowOffsets());
M->owns_blocks = 1;
for (int i=0; i<A->NumRowBlocks(); i++)
{
M->SetDiagonalBlock(i,new UMFPackSolver(A->GetBlock(i,i)));
}
CGSolver cg;
cg.SetRelTol(1e-8);
cg.SetMaxIter(20000);
cg.SetPrintLevel(3);
cg.SetPreconditioner(*M);
cg.SetOperator(*A);
cg.Mult(B, X);
delete M;
a->RecoverFEMSolution(X,x);
Vector & residuals = a->ComputeResidual(x);
double residual = residuals.Norml2();
elements_to_refine.SetSize(0);
double max_resid = residuals.Max();
for (int iel = 0; iel<mesh.GetNE(); iel++)
{
if (residuals[iel] > theta * max_resid)
{
elements_to_refine.Append(iel);
}
}
GridFunction p_gf;
p_gf.MakeRef(p_fes,x.GetBlock(0));
GridFunction u_gf;
u_gf.MakeRef(u_fes,x.GetBlock(1));
GridFunction pex_gf(p_fes);
GridFunction uex_gf(u_fes);
pex_gf.ProjectCoefficient(pex);
uex_gf.ProjectCoefficient(uex);
// Error
int dofs = X.Size();
double p_err = p_gf.ComputeL2Error(pex);
double p_norm = pex_gf.ComputeL2Error(zero);
double u_err = u_gf.ComputeL2Error(uex);
double u_norm = uex_gf.ComputeL2Error(vzero);
double L2Error = sqrt(p_err*p_err + u_err*u_err);
double L2norm = sqrt(p_norm * p_norm + u_norm * u_norm);
double rel_error = L2Error/L2norm;
double rate_err = (i) ? dim*log(err0/L2Error)/log((double)dof0/dofs) : 0.0;
double rate_res = (i) ? dim*log(res0/residual)/log((double)dof0/dofs) : 0.0;
err0 = L2Error;
res0 = residual;
dof0 = dofs;
mfem::out << std::right << std::setw(11) << i << " | "
<< std::setw(10) << dof0 << " | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << err0 << " | "
<< std::setprecision(3)
<< std::setw(10) << std::fixed << rel_error * 100. << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_err << " | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << res0 << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_res << " | "
<< std::resetiosflags(std::ios::showbase)
<< std::endl;
if (visualization)
{
p_out.precision(8);
p_out << "solution\n" << mesh << p_gf <<
"window_title 'Numerical presure' "
<< flush;
// u_out.precision(8);
// u_out << "solution\n" << mesh << u_gf <<
// "window_title 'Numerical velocity' "
// << flush;
}
if (i == ref)
break;
mesh.GeneralRefinement(elements_to_refine,1,1);
for (int i =0; i<trial_fes.Size(); i++)
{
trial_fes[i]->Update(false);
}
a->Update();
}
delete a;
delete q_fec;
delete v_fec;
delete hatp_fes;
delete hatp_fec;
delete hatu_fes;
delete hatu_fec;
delete u_fec;
delete p_fec;
delete u_fes;
delete p_fes;
return 0;
}
double rhs_func(const Vector &x)
{
double p = p_exact(x);
double divu = divu_exact(x);
// f = - ∇⋅u ± ω p,
#ifdef DEFINITE
return -divu + omega * p;
#else
return -divu - omega * p;
#endif
}
double p_exact(const Vector &x)
{
double p, d2p;
Vector dp;
acoustics_solution(x,p,dp,d2p);
return p;
}
void u_exact(const Vector &x, Vector & u)
{
double p, d2p;
acoustics_solution(x,p,u,d2p);
u *= 1./omega;
}
double divu_exact(const Vector &x)
{
double p, d2p;
Vector dp;
acoustics_solution(x,p,dp,d2p);
return d2p/omega;
}
double hatp_exact(const Vector & X)
{
return p_exact(X);
}
void hatu_exact(const Vector & X, Vector & hatu)
{
u_exact(X,hatu);
hatu *= -1.;
}
void acoustics_solution(const Vector & X, double & p, Vector & dp, double & d2p)
{
dp.SetSize(X.Size());
switch (prob)
{
case plane_wave:
{
p = sin(omega*X.Sum());
dp = omega * cos(omega * X.Sum());
d2p = -dim * omega * omega * sin(omega*X.Sum());
}
break;
default:
{
double rk = omega;
double alpha = 45 * M_PI/180.;
double sina = sin(alpha);
double cosa = cos(alpha);
// shift the origin
double xprim=X(0) + 0.1;
double yprim=X(1) + 0.1;
double x = xprim*sina - yprim*cosa;
double y = xprim*cosa + yprim*sina;
double dxdxprim = sina, dxdyprim = -cosa;
double dydxprim = cosa, dydyprim = sina;
//wavelength
double rl = 2.*M_PI/rk;
// beam waist radius
double w0 = 0.05;
// function w
double fact = rl/M_PI/(w0*w0);
double aux = 1. + (fact*y)*(fact*y);
double w = w0*sqrt(aux);
double dwdy = w0*fact*fact*y/sqrt(aux);
double d2wdydy = w0*fact*fact*(1. - (fact*y)*(fact*y)/aux)/sqrt(aux);
double phi0 = atan(fact*y);
double dphi0dy = cos(phi0)*cos(phi0)*fact;
double d2phi0dydy = -2.*cos(phi0)*sin(phi0)*fact*dphi0dy;
double r = y + 1./y/(fact*fact);
double drdy = 1. - 1./(y*y)/(fact*fact);
double d2rdydy = 2./(y*y*y)/(fact*fact);
// pressure
complex<double> zi = complex<double>(0., 1.);
complex<double> ze = - x*x/(w*w) - zi*rk*y - zi * M_PI * x * x/rl/r + zi*phi0/2.;
complex<double> zdedx = -2.*x/(w*w) - 2.*zi*M_PI*x/rl/r;
complex<double> zdedy = 2.*x*x/(w*w*w)*dwdy - zi*rk + zi*M_PI*x*x/rl/(r*r)*drdy + zi*dphi0dy/2.;
complex<double> zd2edxdx = -2./(w*w) - 2.*zi*M_PI/rl/r;
complex<double> zd2edxdy = 4.*x/(w*w*w)*dwdy + 2.*zi*M_PI*x/rl/(r*r)*drdy;
complex<double> zd2edydx = zd2edxdy;
complex<double> zd2edydy = -6.*x*x/(w*w*w*w)*dwdy*dwdy + 2.*x*x/(w*w*w)*d2wdydy - 2.*zi*M_PI*x*x/rl/(r*r*r)*drdy*drdy
+ zi*M_PI*x*x/rl/(r*r)*d2rdydy + zi/2.*d2phi0dydy;
double pf = pow(2.0/M_PI/(w*w),0.25);
double dpfdy = -pow(2./M_PI/(w*w),-0.75)/M_PI/(w*w*w)*dwdy;
double d2pfdydy = -1./M_PI*pow(2./M_PI,-0.75)*(-1.5*pow(w,-2.5)
*dwdy*dwdy + pow(w,-1.5)*d2wdydy);
complex<double> zp = pf*exp(ze);
complex<double> zdpdx = zp*zdedx;
complex<double> zdpdy = dpfdy*exp(ze)+zp*zdedy;
complex<double> zd2pdxdx = zdpdx*zdedx + zp*zd2edxdx;
complex<double> zd2pdxdy = zdpdy*zdedx + zp*zd2edxdy;
complex<double> zd2pdydx = dpfdy*exp(ze)*zdedx + zdpdx*zdedy + zp*zd2edydx;
complex<double> zd2pdydy = d2pfdydy*exp(ze) + dpfdy*exp(ze)*zdedy + zdpdy*zdedy + zp*zd2edydy;
p = zp.real();
dp[0] = (zdpdx*dxdxprim + zdpdy*dydxprim).real();
dp[1] = (zdpdx*dxdyprim + zdpdy*dydyprim).real();
d2p = ( (zd2pdxdx*dxdxprim + zd2pdydx*dydxprim)*dxdxprim + (zd2pdxdy*dxdxprim + zd2pdydy*dydxprim)*dydxprim
+ (zd2pdxdx*dxdyprim + zd2pdydx*dydyprim)*dxdyprim + (zd2pdxdy*dxdyprim + zd2pdydy*dydyprim)*dydyprim ).real();
}
break;
}
}
+525
View File
@@ -0,0 +1,525 @@
// MFEM Ultraweak DPG MPI acoustics (Helmholtz) example
//
// Compile with: make uw_dpgp
//
// - Δ p ± ω^2 p = f̃ , in Ω
// p = p_0, on ∂Ω
//
// First Order System
// ∇ p - ω u = 0, in Ω
// - ∇⋅u ± ω p = f, in Ω
// p = p_0, in ∂Ω
// where f:=f̃/ω
//
// UW-DPG:
//
// p ∈ L^2(Ω), u ∈ (L^2(Ω))^dim
// p̂ ∈ H^1/2(Ω), û ∈ H^-1/2(Ω)
// -(p, ∇⋅v) - ω (u , v) + < p̂, v⋅n> = 0, ∀ v ∈ H(div,Ω)
// (u , ∇ q) ± ω (p , q) + < û, q > = (f,q) ∀ q ∈ H^1(Ω)
// p̂ = p_0 on ∂Ω
// Note:
// p̂ := p on Γ_h (skeleton)
// û := -u on Γ_h
// -------------------------------------------------------------
// | | p | u | p̂ | û | RHS |
// -------------------------------------------------------------
// | v | -(p, ∇⋅v) | - ω (u,v) | < p̂, v⋅n> | | |
// | | | | | | |
// | q | ± ω (p,q) | (u , ∇ q) | | < û,q > | (f,q) |
// where (q,v) ∈ H^1(Ω) × H(div,Ω)
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
// #define DEFINITE
double p_exact(const Vector &x);
void u_exact(const Vector &x, Vector & u);
double rhs_func(const Vector &x);
void gradp_exact(const Vector &x, Vector &gradu);
double divu_exact(const Vector &x);
double d2_exact(const Vector &x);
double hatp_exact(const Vector & X);
void hatu_exact(const Vector & X, Vector & hatu);
int dim;
double omega;
int main(int argc, char *argv[])
{
Mpi::Init();
int num_procs = Mpi::WorldSize();
int myid = Mpi::WorldRank();
Hypre::Init();
// 1. Parse command-line options.
const char *mesh_file = "../../../data/inline-quad.mesh";
int order = 1;
int delta_order = 1;
bool visualization = true;
double rnum=1.0;
int sr = 0;
int pr = 1;
double theta = 0.0;
bool adjoint_graph_norm = false;
bool static_cond = false;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree)");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&rnum, "-rnum", "--number_of_wavelenths",
"Number of wavelengths");
args.AddOption(&delta_order, "-do", "--delta_order",
"Order enrichment for DPG test space.");
args.AddOption(&theta, "-theta", "--theta",
"Theta parameter for AMR");
args.AddOption(&adjoint_graph_norm, "-graph-norm", "--adjoint-graph-norm",
"-no-graph-norm", "--no-adjoint-graph-norm",
"Enable or disable Adjoint Graph Norm on the test space");
args.AddOption(&sr, "-sref", "--serial_ref",
"Number of parallel refinements.");
args.AddOption(&pr, "-pref", "--parallel_ref",
"Number of parallel refinements.");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.Parse();
if (!args.Good())
{
if (myid == 0)
{
args.PrintUsage(cout);
}
return 1;
}
if (myid == 0)
{
args.PrintOptions(cout);
}
omega = 2.0 * M_PI * rnum;
Mesh mesh(mesh_file, 1, 1);
for (int i = 0; i<sr; i++)
{
mesh.UniformRefinement();
}
dim = mesh.Dimension();
mesh.EnsureNCMesh();
ParMesh pmesh(MPI_COMM_WORLD, mesh);
mesh.Clear();
// Define spaces
// L2 space for p
FiniteElementCollection *p_fec = new L2_FECollection(order-1,dim);
ParFiniteElementSpace *p_fes = new ParFiniteElementSpace(&pmesh,p_fec);
// Vector L2 space for u
FiniteElementCollection *u_fec = new L2_FECollection(order-1,dim);
ParFiniteElementSpace *u_fes = new ParFiniteElementSpace(&pmesh,u_fec, dim);
// H^1/2 space for p̂
FiniteElementCollection * hatp_fec = new H1_Trace_FECollection(order,dim);
ParFiniteElementSpace *hatp_fes = new ParFiniteElementSpace(&pmesh,hatp_fec);
// H^-1/2 space for û
FiniteElementCollection * hatu_fec = new RT_Trace_FECollection(order-1,dim);
ParFiniteElementSpace *hatu_fes = new ParFiniteElementSpace(&pmesh,hatu_fec);
// testspace fe collections
int test_order = order+delta_order;
FiniteElementCollection * q_fec = new H1_FECollection(test_order, dim);
FiniteElementCollection * v_fec = new RT_FECollection(test_order-1, dim);
Array<ParFiniteElementSpace * > trial_fes;
trial_fes.Append(p_fes);
trial_fes.Append(u_fes);
trial_fes.Append(hatp_fes);
trial_fes.Append(hatu_fes);
Array<FiniteElementCollection * > test_fec;
test_fec.Append(q_fec);
test_fec.Append(v_fec);
ConstantCoefficient one(1.0);
ConstantCoefficient zero(0.0);
Vector vec0(dim); vec0 = 0.;
VectorConstantCoefficient vzero(vec0);
ConstantCoefficient negone(-1.0);
ConstantCoefficient omeg(omega);
ConstantCoefficient omeg2(omega*omega);
ConstantCoefficient negomeg(-omega);
ParNormalEquations * a = new ParNormalEquations(trial_fes,test_fec);
a->StoreMatrices(true);
// Integrators
// ± ω (p,q)
#ifdef DEFINITE
a->AddTrialIntegrator(new MixedScalarMassIntegrator(omeg),0,0);
#else
a->AddTrialIntegrator(new MixedScalarMassIntegrator(negomeg),0,0);
#endif
// (u , ∇ q)
a->AddTrialIntegrator(new TransposeIntegrator(new GradientIntegrator(one)),1,0);
// -(p, ∇⋅v)
a->AddTrialIntegrator(new MixedScalarWeakGradientIntegrator(one),0,1);
// - ω (u,v)
a->AddTrialIntegrator(new TransposeIntegrator(new VectorFEMassIntegrator(negomeg)),1,1);
// < p̂, v⋅n>
a->AddTrialIntegrator(new NormalTraceIntegrator,2,1);
// < û,q >
a->AddTrialIntegrator(new TraceIntegrator,3,0);
// test integrators
//space-induced norm for H(div) × H1
// (∇q,∇δq)
a->AddTestIntegrator(new DiffusionIntegrator(one),0,0);
// (q,δq)
a->AddTestIntegrator(new MassIntegrator(one),0,0);
// (∇⋅v,∇⋅δv)
a->AddTestIntegrator(new DivDivIntegrator(one),1,1);
// (v,δv)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),1,1);
// additional integrators for the adjoint graph norm
if (adjoint_graph_norm)
{
// -ω (∇q,δv)
a->AddTestIntegrator(new MixedVectorGradientIntegrator(negomeg),0,1);
// -ω (v,δq)
a->AddTestIntegrator(new MixedVectorWeakDivergenceIntegrator(omeg),1,0);
// ω^2 (v,δv)
a->AddTestIntegrator(new VectorFEMassIntegrator(omeg2),1,1);
#ifdef DEFINITE
// - ω (∇⋅v,δq)
a->AddTestIntegrator(new VectorFEDivergenceIntegrator(negomeg),1,0);
// - ω (q,∇⋅v)
a->AddTestIntegrator(new MixedScalarWeakGradientIntegrator(omeg),0,1);
#else
// ω (∇⋅v,δq)
a->AddTestIntegrator(new VectorFEDivergenceIntegrator(omeg),1,0);
// ω (q,∇⋅v)
a->AddTestIntegrator(new MixedScalarWeakGradientIntegrator(negomeg),0,1);
#endif
// ω^2 (q,δq)
a->AddTestIntegrator(new MassIntegrator(omeg2),0,0);
}
// RHS
FunctionCoefficient f_rhs(rhs_func);
a->AddDomainLFIntegrator(new DomainLFIntegrator(f_rhs),0);
FunctionCoefficient hatpex(hatp_exact);
FunctionCoefficient pex(p_exact);
VectorFunctionCoefficient uex(dim,u_exact);
Array<int> elements_to_refine;
ParGridFunction hatp_gf;
socketstream p_out;
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
p_out.open(vishost, visport);
}
double res0 = 0.;
double err0 = 0.;
int dof0;
if (myid == 0)
{
mfem::out << "\n Refinement |"
<< " Dofs |"
<< " ω |"
<< " L2 Error |"
<< " Relative % |"
<< " Rate |"
<< " Residual |"
<< " Rate |"
<< " PCG it |" << endl;
mfem::out << " --------------------"
<< "---------------------"
<< "---------------------"
<< "---------------------"
<< "----------------" << endl;
}
for (int i = 0; i<pr; i++)
{
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
Array<int> ess_tdof_list;
Array<int> ess_bdr;
if (pmesh.bdr_attributes.Size())
{
ess_bdr.SetSize(pmesh.bdr_attributes.Max());
ess_bdr = 1;
hatp_fes->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// shift the ess_tdofs
for (int j = 0; j < ess_tdof_list.Size(); j++)
{
ess_tdof_list[j] += p_fes->GetTrueVSize() + u_fes->GetTrueVSize();
}
Array<int> offsets(5);
offsets[0] = 0;
offsets[1] = p_fes->GetVSize();
offsets[2] = u_fes->GetVSize();
offsets[3] = hatp_fes->GetVSize();
offsets[4] = hatu_fes->GetVSize();
offsets.PartialSum();
BlockVector x(offsets);
x = 0.0;
hatp_gf.MakeRef(hatp_fes,x.GetBlock(2));
hatp_gf.ProjectBdrCoefficient(hatpex,ess_bdr);
Vector X,B;
OperatorPtr Ah;
a->FormLinearSystem(ess_tdof_list,x,Ah,X,B);
BlockOperator * A = Ah.As<BlockOperator>();
BlockDiagonalPreconditioner * M = new BlockDiagonalPreconditioner(A->RowOffsets());
M->owns_blocks = 1;
int skip = 0;
if (!static_cond)
{
HypreBoomerAMG * amg0 = new HypreBoomerAMG((HypreParMatrix &)A->GetBlock(0,0));
HypreBoomerAMG * amg1 = new HypreBoomerAMG((HypreParMatrix &)A->GetBlock(1,1));
amg0->SetPrintLevel(0);
amg1->SetPrintLevel(0);
// amg0->SetRelaxType(16);
// amg1->SetRelaxType(16);
M->SetDiagonalBlock(0,amg0);
M->SetDiagonalBlock(1,amg1);
skip = 2;
}
HypreBoomerAMG * amg2 = new HypreBoomerAMG((HypreParMatrix &)A->GetBlock(skip,skip));
amg2->SetPrintLevel(0);
// amg2->SetRelaxType(16);
M->SetDiagonalBlock(skip,amg2);
HypreSolver * prec;
if (dim == 2)
{
prec = new HypreAMS((HypreParMatrix &)A->GetBlock(skip+1,skip+1), hatu_fes);
}
else
{
prec = new HypreADS((HypreParMatrix &)A->GetBlock(skip+1,skip+1), hatu_fes);
}
M->SetDiagonalBlock(skip+1,prec);
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-7);
cg.SetMaxIter(20000);
cg.SetPrintLevel(0);
cg.SetPreconditioner(*M);
cg.SetOperator(*A);
cg.Mult(B, X);
int num_iter = cg.GetNumIterations();
delete M;
a->RecoverFEMSolution(X,x);
Vector & residuals = a->ComputeResidual(x);
double residual = residuals.Norml2();
double maxresidual = residuals.Max();
double globalresidual = residual * residual;
MPI_Allreduce(MPI_IN_PLACE,&maxresidual,1,MPI_DOUBLE,MPI_MAX,MPI_COMM_WORLD);
MPI_Allreduce(MPI_IN_PLACE,&globalresidual,1,MPI_DOUBLE,MPI_SUM,MPI_COMM_WORLD);
globalresidual = sqrt(globalresidual);
elements_to_refine.SetSize(0);
for (int iel = 0; iel<pmesh.GetNE(); iel++)
{
if (residuals[iel] > theta * maxresidual)
{
elements_to_refine.Append(iel);
}
}
ParGridFunction p_gf;
p_gf.MakeRef(p_fes,x.GetBlock(0));
ParGridFunction u_gf;
u_gf.MakeRef(u_fes,x.GetBlock(1));
ParGridFunction pex_gf(p_fes);
ParGridFunction uex_gf(u_fes);
pex_gf.ProjectCoefficient(pex);
uex_gf.ProjectCoefficient(uex);
int dofs = p_fes->GlobalTrueVSize()
+ u_fes->GlobalTrueVSize()
+ hatp_fes->GlobalTrueVSize()
+ hatu_fes->GlobalTrueVSize();
double p_err = p_gf.ComputeL2Error(pex);
double p_norm = pex_gf.ComputeL2Error(zero);
double u_err = u_gf.ComputeL2Error(uex);
double u_norm = uex_gf.ComputeL2Error(vzero);
double L2Error = sqrt(p_err*p_err + u_err*u_err);
double L2norm = sqrt(p_norm * p_norm + u_norm * u_norm);
double rel_error = L2Error/L2norm;
double rate_err = (i) ? dim*log(err0/L2Error)/log((double)dof0/dofs) : 0.0;
double rate_res = (i) ? dim*log(res0/globalresidual)/log((double)dof0/dofs) : 0.0;
err0 = L2Error;
res0 = globalresidual;
dof0 = dofs;
std::ios oldState(nullptr);
if (myid == 0)
{
mfem::out << std::right << std::setw(11) << i << " | "
<< std::setw(10) << dof0 << " | "
<< std::setprecision(0) << std::fixed
<< std::setw(2) << 2*rnum << " π | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << err0 << " | "
<< std::setprecision(3)
<< std::setw(10) << std::fixed << rel_error * 100. << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_err << " | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << res0 << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_res << " | "
<< std::setw(6) << std::fixed << num_iter << " | "
<< std::setprecision(5)
<< std::scientific
<< std::endl;
}
if (visualization)
{
p_out << "parallel " << num_procs << " " << myid << "\n";
p_out.precision(8);
p_out << "solution\n" << pmesh << p_gf <<
"window_title 'Numerical pressure' "
<< flush;
}
if (i == pr)
break;
pmesh.GeneralRefinement(elements_to_refine,1,1);
for (int i =0; i<trial_fes.Size(); i++)
{
trial_fes[i]->Update(false);
}
a->Update();
}
delete a;
delete q_fec;
delete v_fec;
delete hatp_fes;
delete hatp_fec;
delete hatu_fes;
delete hatu_fec;
delete u_fec;
delete p_fec;
delete u_fes;
delete p_fes;
return 0;
}
double rhs_func(const Vector &x)
{
double p = p_exact(x);
double divu = divu_exact(x);
// f = - ∇⋅u ± ω p,
#ifdef DEFINITE
return -divu + omega * p;
#else
return -divu - omega * p;
#endif
}
double p_exact(const Vector &x)
{
return sin(omega*x.Sum());
}
void gradp_exact(const Vector &x, Vector &grad)
{
grad.SetSize(x.Size());
grad = omega * cos(omega * x.Sum());
}
void u_exact(const Vector &x, Vector & u)
{
gradp_exact(x,u);
u *= 1./omega;
}
double divu_exact(const Vector &x)
{
return d2_exact(x)/omega;
}
double d2_exact(const Vector &x)
{
return -dim * omega * omega * sin(omega*x.Sum());
}
double hatp_exact(const Vector & X)
{
return p_exact(X);
}
void hatu_exact(const Vector & X, Vector & hatu)
{
u_exact(X,hatu);
hatu *= -1.;
}
@@ -0,0 +1,59 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Use the MFEM build directory
MFEM_DIR ?= ../../..
MFEM_BUILD_DIR ?= ../../..
SRC = $(if $(MFEM_DIR:../../..=),$(MFEM_DIR)/examples/dpg_tests/convection-diffusion,)
CONFIG_MK = $(MFEM_BUILD_DIR)/config/config.mk
MFEM_LIB_FILE = mfem_is_not_built
-include $(CONFIG_MK)
SEQ_EXAMPLES = uw_dpg
PAR_EXAMPLES = uw_dpgp
ifeq ($(MFEM_USE_MPI),NO)
EXAMPLES = $(SEQ_EXAMPLES)
else
EXAMPLES = $(PAR_EXAMPLES) $(SEQ_EXAMPLES)
endif
.SUFFIXES:
.SUFFIXES: .o .cpp .mk
.PHONY: all clean clean-build clean-exec
# Remove built-in rule
%: %.cpp
# Replace the default implicit rule for *.cpp files
%: $(SRC)%.cpp $(MFEM_LIB_FILE) $(CONFIG_MK)
$(MFEM_CXX) $(MFEM_FLAGS) $< -o $@ $(MFEM_LIBS)
all: $(EXAMPLES)
MFEM_TESTS = EXAMPLES
include $(MFEM_TEST_MK)
# Testing: Parallel vs. serial runs
RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
%-test-par: %
@$(call mfem-test,$<, $(RUN_MPI), Parallel example)
%-test-seq: %
@$(call mfem-test,$<,, Serial example)
clean: clean-build clean-exec
clean-build:
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
rm -rf *.dSYM *.TVD.*breakpoints
clean-exec:
@@ -0,0 +1,652 @@
// MFEM Ultraweak DPG example
//
// Compile with: make uw_dpg
//
// sample runs
// ./uw_dpg -m ../../../data/inline-quad.mesh -o 3 -ref 10 -test-norm 2 -do 1 -prob 1 -eps 1e-4
// - εΔu + ∇⋅(βu) = f, in Ω
// u = u_0, on ∂Ω
// First Order System
// - ∇⋅σ + ∇⋅(βu) = f, in Ω
// 1/ε σ - ∇u = 0, in Ω
// u = u_0, on ∂Ω
// UW-DPG:
//
// u ∈ L^2(Ω), σ ∈ (L^2(Ω))^dim
// û ∈ H^1/2, σ̂ ∈ H^-1/2
// -(βu , ∇v) + (σ , ∇v) + < f̂ , v > = (f,v), ∀ v ∈ H^1(Ω)
// (u , ∇⋅τ) + 1/ε (σ , τ) + < û , τ⋅n > = 0, ∀ τ ∈ H(div,Ω)
// û = u_0 on ∂Ω
// Note:
// f̂ := βu - σ
// û := -u
// -------------------------------------------------------------
// | | u | σ | û | f̂ | RHS |
// -------------------------------------------------------------
// | v |-(βu , ∇v) | (σ , ∇v) | | < f̂ ,v > | (f,v) |
// | | | | | | |
// | τ | (u ,∇⋅τ) | 1/ε(σ , τ)| <û,τ⋅n> | | 0 |
// where (v,τ) ∈ H^1(Ω_h) × H(div,Ω_h)
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
enum prob_type
{
polynomial,
EJ,
general
};
enum test_norm_type
{
standard,
adjoint_graph,
robust
};
prob_type prob;
test_norm_type test_norm;
Vector beta;
double epsilon;
// Function returns the solution u, and gradient du and the Laplacian d2u
void solution(const Vector & x, double & u, Vector & du, double & d2u);
double exact_u(const Vector & X);
void exact_sigma(const Vector & X, Vector & sigma);
double exact_hatu(const Vector & X);
void exact_hatf(const Vector & X, Vector & hatf);
double f_exact(const Vector & X);
int main(int argc, char *argv[])
{
// 1. Parse command-line options.
const char *mesh_file = "../../../data/inline-quad.mesh";
int order = 1;
int delta_order = 1;
int ref = 1;
bool visualization = true;
int iprob = 0;
int itest_norm = 0;
double theta = 0.7;
epsilon = 1e0;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree).");
args.AddOption(&delta_order, "-do", "--delta_order",
"Order enrichment for DPG test space.");
args.AddOption(&epsilon, "-eps", "--epsilon",
"Epsilon coefficient");
args.AddOption(&ref, "-ref", "--num_refinements",
"Number of uniform refinements");
args.AddOption(&theta, "-theta", "--theta",
"Theta parameter for AMR");
args.AddOption(&iprob, "-prob", "--problem", "Problem case"
" 0: polynomial, 1: EJ ,2: General");
args.AddOption(&itest_norm, "-test-norm", "--test-norm", "Choice of test norm"
" 0: Standard, 1: Adjoint Graph, 2: Robust");
args.AddOption(&beta, "-beta", "--beta",
"Vector Coefficient beta");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
if (iprob > 2) { iprob = 2; }
prob = (prob_type)iprob;
test_norm = (test_norm_type)itest_norm;
if (prob == prob_type::EJ)
{
mesh_file = "../../../data/inline-quad.mesh";
}
Mesh mesh(mesh_file, 1, 1);
int dim = mesh.Dimension();
if (beta.Size() == 0)
{
beta.SetSize(dim);
beta[0] = 1.;
beta[1] = 0.;
}
// Define spaces
// L2 space for u
FiniteElementCollection *u_fec = new L2_FECollection(order-1,dim);
FiniteElementSpace *u_fes = new FiniteElementSpace(&mesh,u_fec);
// Vector L2 space for σ
FiniteElementCollection *sigma_fec = new L2_FECollection(order-1,dim);
FiniteElementSpace *sigma_fes = new FiniteElementSpace(&mesh,sigma_fec, dim);
// H^1/2 space for û
FiniteElementCollection * hatu_fec = new H1_Trace_FECollection(order,dim);
FiniteElementSpace *hatu_fes = new FiniteElementSpace(&mesh,hatu_fec);
// H^-1/2 space for σ̂
FiniteElementCollection * hatf_fec = new RT_Trace_FECollection(order-1,dim);
FiniteElementSpace *hatf_fes = new FiniteElementSpace(&mesh,hatf_fec);
// testspace fe collections
int test_order = order+delta_order;
FiniteElementCollection * v_fec = new H1_FECollection(test_order, dim);
FiniteElementCollection * tau_fec = new RT_FECollection(test_order-1, dim);
// Coefficients
ConstantCoefficient one(1.0);
ConstantCoefficient negone(-1.0);
ConstantCoefficient eps(epsilon);
ConstantCoefficient eps1(1./epsilon);
ConstantCoefficient negeps1(-1./epsilon);
ConstantCoefficient eps2(1/(epsilon*epsilon));
ConstantCoefficient negeps(-epsilon);
VectorConstantCoefficient betacoeff(beta);
Vector negbeta = beta;
negbeta.Neg();
ConstantCoefficient zero(0.0);
Vector vec0(dim); vec0 = 0.;
VectorConstantCoefficient vzero(vec0);
DenseMatrix bbt(beta.Size());
MultVVt(beta, bbt);
MatrixConstantCoefficient bbtcoeff(bbt);
VectorConstantCoefficient negbetacoeff(negbeta);
// Normal equation weak formulation
Array<FiniteElementSpace * > trial_fes;
Array<FiniteElementCollection * > test_fec;
trial_fes.Append(u_fes);
trial_fes.Append(sigma_fes);
trial_fes.Append(hatu_fes);
trial_fes.Append(hatf_fes);
test_fec.Append(v_fec);
test_fec.Append(tau_fec);
FiniteElementCollection *coeff_fec = new L2_FECollection(0,dim);
FiniteElementSpace *coeff_fes = new FiniteElementSpace(&mesh,coeff_fec);
GridFunction c1_gf, c2_gf;
GridFunctionCoefficient c1_coeff(&c1_gf);
GridFunctionCoefficient c2_coeff(&c2_gf);
NormalEquations * a = new NormalEquations(trial_fes,test_fec);
a->StoreMatrices(true);
//-(βu , ∇v)
a->AddTrialIntegrator(new MixedScalarWeakDivergenceIntegrator(betacoeff),0,0);
// (σ,∇ v)
a->AddTrialIntegrator(new TransposeIntegrator(new GradientIntegrator(one)),1,0);
// (u ,∇⋅τ)
a->AddTrialIntegrator(new MixedScalarWeakGradientIntegrator(negone),0,1);
// 1/ε (σ,τ)
a->AddTrialIntegrator(new TransposeIntegrator(new VectorFEMassIntegrator(eps1)),1,1);
// <û,τ⋅n>
a->AddTrialIntegrator(new NormalTraceIntegrator,2,1);
// <f̂ ,v>
a->AddTrialIntegrator(new TraceIntegrator,3,0);
switch (test_norm)
{
case standard:
{
// (∇v,∇δv)
mfem::out << "\n Test norm: Standard" << endl;
a->AddTestIntegrator(new DiffusionIntegrator(one),0,0);
// (v,δv)
a->AddTestIntegrator(new MassIntegrator(one),0,0);
// (∇⋅τ,∇⋅δτ)
a->AddTestIntegrator(new DivDivIntegrator(one),1,1);
// (τ,δτ)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),1,1);
}
break;
case adjoint_graph:
{
mfem::out << "\n Test norm: Adjoint Graph" << endl;
// (∇v,∇δv)
a->AddTestIntegrator(new DiffusionIntegrator(one),0,0);
// (β⋅∇v, β⋅∇δv)
a->AddTestIntegrator(new DiffusionIntegrator(bbtcoeff), 0,0);
// (v,δv)
a->AddTestIntegrator(new MassIntegrator(one),0,0);
// (∇⋅τ,∇⋅δτ)
a->AddTestIntegrator(new DivDivIntegrator(one),1,1);
// (τ,δτ)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),1,1);
// 1/ε^2 (τ,δτ)
a->AddTestIntegrator(new VectorFEMassIntegrator(eps2),1,1);
// 1/ε (∇v, δτ)
a->AddTestIntegrator(new MixedVectorGradientIntegrator(eps1),0,1);
// - (β ⋅ ∇v,∇⋅δτ)
a->AddTestIntegrator(new MixedGradDivIntegrator(betacoeff),0,1);
// 1/ε (τ,∇δv)
a->AddTestIntegrator(new MixedVectorWeakDivergenceIntegrator(negeps1),1,0);
// -(β ∇⋅τ ,∇⋅δv)
a->AddTestIntegrator(new MixedDivGradIntegrator(betacoeff),1,0);
}
break;
default:
{
mfem::out << "\n Test norm: Robust" << endl;
c1_gf.SetSpace(coeff_fes);
c2_gf.SetSpace(coeff_fes);
Array<int> dofs;
for (int i =0; i < mesh.GetNE(); i++)
{
double volume = mesh.GetElementVolume(i);
double c1 = min(epsilon/volume, 1.);
double c2 = min(1./epsilon, 1./volume);
// double c2 = 1.;
coeff_fes->GetElementDofs(i,dofs);
c1_gf.SetSubVector(dofs,c1);
c2_gf.SetSubVector(dofs,c2);
}
// c1 (v,δv)
a->AddTestIntegrator(new MassIntegrator(c1_coeff),0,0);
// ε (∇v,∇δv)
a->AddTestIntegrator(new DiffusionIntegrator(eps),0,0);
// (β⋅∇v, β⋅∇δv)
a->AddTestIntegrator(new DiffusionIntegrator(bbtcoeff), 0,0);
// c2 (τ,δτ)
a->AddTestIntegrator(new VectorFEMassIntegrator(c2_coeff),1,1);
// (∇⋅τ,∇⋅δτ)
a->AddTestIntegrator(new DivDivIntegrator(one),1,1);
}
break;
}
FunctionCoefficient f(f_exact);
// if (prob != prob_type::EJ)
// {
a->AddDomainLFIntegrator(new DomainLFIntegrator(f),0);
// }
FunctionCoefficient hatuex(exact_hatu);
VectorFunctionCoefficient hatfex(dim,exact_hatf);
Array<int> elements_to_refine;
FunctionCoefficient uex(exact_u);
VectorFunctionCoefficient sigmaex(dim,exact_sigma);
GridFunction hatu_gf;
GridFunction hatf_gf;
// socketstream uex_out;
socketstream u_out;
// socketstream sigma_out;
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
u_out.open(vishost, visport);
// uex_out.open(vishost, visport);
// sigma_out.open(vishost, visport);
}
double res0 = 0.;
double err0 = 0.;
int dof0;
mfem::out << " Refinement |"
<< " Dofs |"
<< " L2 Error |"
<< " Relative % |"
<< " Rate |"
<< " Residual |"
<< " Rate |" << endl;
mfem::out << " --------------------"
<< "-------------------"
<< "-------------------"
<< "-------------------" << endl;
for (int i = 0; i<=ref; i++)
{
a->Assemble();
Array<int> ess_tdof_list_uhat;
Array<int> ess_tdof_list_fhat;
Array<int> ess_bdr_uhat;
Array<int> ess_bdr_fhat;
if (mesh.bdr_attributes.Size())
{
ess_bdr_uhat.SetSize(mesh.bdr_attributes.Max());
ess_bdr_fhat.SetSize(mesh.bdr_attributes.Max());
// ess_bdr_uhat = 1;
// ess_bdr_fhat = 0;
ess_bdr_uhat = 0;
ess_bdr_fhat = 1;
ess_bdr_uhat[1] = 1;
ess_bdr_fhat[1] = 0;
hatu_fes->GetEssentialTrueDofs(ess_bdr_uhat, ess_tdof_list_uhat);
hatf_fes->GetEssentialTrueDofs(ess_bdr_fhat, ess_tdof_list_fhat);
}
// shift the ess_tdofs
int n = ess_tdof_list_uhat.Size();
int m = ess_tdof_list_fhat.Size();
Array<int> ess_tdof_list(n+m);
for (int j = 0; j < n; j++)
{
ess_tdof_list[j] = ess_tdof_list_uhat[j]
+ u_fes->GetTrueVSize()
+ sigma_fes->GetTrueVSize();
}
for (int j = 0; j < m; j++)
{
ess_tdof_list[j+n] = ess_tdof_list_fhat[j]
+ u_fes->GetTrueVSize()
+ sigma_fes->GetTrueVSize()
+ hatu_fes->GetTrueVSize();
}
Array<int> offsets(5);
offsets[0] = 0;
offsets[1] = u_fes->GetVSize();
offsets[2] = sigma_fes->GetVSize();
offsets[3] = hatu_fes->GetVSize();
offsets[4] = hatf_fes->GetVSize();
offsets.PartialSum();
BlockVector x(offsets);
x = 0.0;
hatu_gf.MakeRef(hatu_fes,x.GetBlock(2));
hatf_gf.MakeRef(hatf_fes,x.GetBlock(3));
hatu_gf.ProjectBdrCoefficient(hatuex,ess_bdr_uhat);
hatf_gf.ProjectBdrCoefficientNormal(hatfex,ess_bdr_fhat);
OperatorPtr Ah;
Vector X,B;
a->FormLinearSystem(ess_tdof_list,x,Ah,X,B);
BlockMatrix * A = Ah.As<BlockMatrix>();
// BlockDiagonalPreconditioner * M = new BlockDiagonalPreconditioner(A->RowOffsets());
// M->owns_blocks = 1;
// for (int i=0; i<A->NumRowBlocks(); i++)
// {
// M->SetDiagonalBlock(i,new UMFPackSolver(A->GetBlock(i,i)));
// }
CGSolver cg;
cg.SetRelTol(1e-12);
cg.SetMaxIter(200000);
cg.SetPrintLevel(0);
// cg.SetPreconditioner(*M);
cg.SetOperator(*A);
cg.Mult(B, X);
// delete M;
a->RecoverFEMSolution(X,x);
Vector & residuals = a->ComputeResidual(x);
double residual = residuals.Norml2();
elements_to_refine.SetSize(0);
double max_resid = residuals.Max();
for (int iel = 0; iel<mesh.GetNE(); iel++)
{
if (residuals[iel] > theta * max_resid)
{
elements_to_refine.Append(iel);
}
}
GridFunction uex_gf(u_fes);
uex_gf.ProjectCoefficient(uex);
GridFunction sigmaex_gf(sigma_fes);
sigmaex_gf.ProjectCoefficient(sigmaex);
GridFunction u_gf;
u_gf.MakeRef(u_fes,x.GetBlock(0));
GridFunction sigma_gf;
sigma_gf.MakeRef(sigma_fes,x.GetBlock(1));
int dofs = X.Size();
double u_err = u_gf.ComputeL2Error(uex);
double u_norm = uex_gf.ComputeL2Error(zero);
// mfem::out << "u_err = " << u_err << endl;
double sigma_err = sigma_gf.ComputeL2Error(sigmaex);
double sigma_norm = sigmaex_gf.ComputeL2Error(vzero);
// mfem::out << "sigma_err = " << sigma_err << endl;
double L2Error = sqrt(u_err*u_err + sigma_err*sigma_err);
double L2norm = sqrt(u_norm * u_norm + sigma_norm * sigma_norm);
double rel_error = L2Error/L2norm;
double rate_err = (i) ? dim*log(err0/L2Error)/log((double)dof0/dofs) : 0.0;
double rate_res = (i) ? dim*log(res0/residual)/log((double)dof0/dofs) : 0.0;
err0 = L2Error;
res0 = residual;
dof0 = dofs;
mfem::out << std::right << std::setw(11) << i << " | "
<< std::setw(10) << dof0 << " | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << err0 << " | "
<< std::setprecision(3)
<< std::setw(10) << std::fixed << rel_error * 100. << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_err << " | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << res0 << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_res << " | "
<< std::resetiosflags(std::ios::showbase)
<< std::endl;
if (visualization)
{
// uex_out.precision(8);
// uex_out << "solution\n" << mesh << uex_gf <<
// "window_title 'Exact u' "
// << flush;
u_out.precision(8);
u_out << "solution\n" << mesh << u_gf <<
"window_title 'Numerical u' "
<< flush;
// sigma_out.precision(8);
// sigma_out << "solution\n" << mesh << sigma_gf <<
// "window_title 'Numerical flux' "
// << flush;
}
if (i == ref)
break;
mesh.GeneralRefinement(elements_to_refine,1,1);
for (int i =0; i<trial_fes.Size(); i++)
{
trial_fes[i]->Update(false);
}
a->Update();
if (test_norm == test_norm_type::robust)
{
coeff_fes->Update();
c1_gf.Update();
c2_gf.Update();
Array<int> dofs;
for (int i = 0; i < mesh.GetNE(); i++)
{
double volume = mesh.GetElementVolume(i);
double c1 = min(epsilon/volume, 1.);
double c2 = min(1./epsilon, 1./volume);
// double c2 = 1.;
coeff_fes->GetElementDofs(i,dofs);
c1_gf.SetSubVector(dofs,c1);
c2_gf.SetSubVector(dofs,c2);
}
}
}
delete coeff_fes;
delete coeff_fec;
delete a;
delete tau_fec;
delete v_fec;
delete hatf_fes;
delete hatf_fec;
delete hatu_fes;
delete hatu_fec;
delete sigma_fes;
delete sigma_fec;
delete u_fec;
delete u_fes;
return 0;
}
void solution(const Vector & X, double & u, Vector & du, double & d2u)
{
double x = X[0];
double y = X[1];
double z = 0.;
if (X.Size() == 3) z = X[2];
du.SetSize(X.Size());
du = 0.;
d2u = 0.;
switch(prob)
{
case polynomial:
{
int n=2;
int m=2;
u = pow(x,n)*pow(y,m);
du[0] = n * pow(x,n-1) * pow(y,m);
du[1] = m * pow(x,n) * pow(y,m-1);
d2u = n * (n-1) * pow(x,n-2) * pow(y,m)
+ m * (m-1) * pow(x,n) * pow(y,m-2);
}
break;
case EJ:
{
double alpha = sqrt(1. + 4. * epsilon * epsilon * M_PI * M_PI);
double r1 = (1. + alpha) / (2.*epsilon);
double r2 = (1. - alpha) / (2.*epsilon);
double denom = exp(-r2) - exp(-r1);
double g1 = exp(r2*(x-1.));
double g1_x = r2*g1;
double g1_xx = r2*g1_x;
double g2 = exp(r1*(x-1.));
double g2_x = r1*g2;
double g2_xx = r1*g2_x;
double g = g1-g2;
double g_x = g1_x - g2_x;
double g_xx = g1_xx - g2_xx;
u = g * cos(M_PI * y)/denom;
double u_x = g_x * cos(M_PI * y)/denom;
double u_xx = g_xx * cos(M_PI * y)/denom;
double u_y = -M_PI * g * sin(M_PI*y)/denom;
double u_yy = -M_PI * M_PI * u;
du[0] = u_x;
du[1] = u_y;
d2u = u_xx + u_yy;
}
break;
default:
{
double alpha = M_PI * (x + y + z);
u = sin(alpha);
du.SetSize(X.Size());
for (int i = 0; i<du.Size(); i++)
{
du[i] = M_PI * cos(alpha);
}
d2u = - M_PI*M_PI * u * du.Size();
}
break;
}
}
double exact_u(const Vector & X)
{
double u, d2u;
Vector du;
solution(X,u,du,d2u);
return u;
}
void exact_sigma(const Vector & X, Vector & sigma)
{
double u, d2u;
Vector du;
solution(X,u,du,d2u);
// σ = ε ∇ u
sigma = du;
sigma *= epsilon;
}
double exact_hatu(const Vector & X)
{
return -exact_u(X);
}
void exact_hatf(const Vector & X, Vector & hatf)
{
Vector sigma;
exact_sigma(X,sigma);
double u = exact_u(X);
hatf.SetSize(X.Size());
for (int i = 0; i<hatf.Size(); i++)
{
hatf[i] = beta[i] * u - sigma[i];
}
}
double f_exact(const Vector & X)
{
// f = - εΔu + ∇⋅(βu)
double u, d2u;
Vector du;
solution(X,u,du,d2u);
double s = 0;
for (int i = 0; i<du.Size(); i++)
{
s += beta[i] * du[i];
}
return -epsilon * d2u + s;
}
@@ -0,0 +1,704 @@
// MFEM Ultraweak DPG example
//
// Compile with: make uw_dpgp
//
// sample runs
// mpirun -np 6 ./uw_dpgp -m ../../../data/inline-quad.mesh -o 3 -ref 10 -test-norm 2 -do 1 -prob 1 -eps 1e-4
// - εΔu + ∇⋅(βu) = f, in Ω
// u = u_0, on ∂Ω
// First Order System
// - ∇⋅σ + ∇⋅(βu) = f, in Ω
// 1/ε σ - ∇u = 0, in Ω
// u = u_0, on ∂Ω
// UW-DPG:
//
// u ∈ L^2(Ω), σ ∈ (L^2(Ω))^dim
// û ∈ H^1/2, f̂ ∈ H^-1/2
// -(βu , ∇v) + (σ , ∇v) + < f̂ , v > = (f,v), ∀ v ∈ H^1(Ω)
// (u , ∇⋅τ) + 1/ε (σ , τ) + < û , τ⋅n > = 0, ∀ τ ∈ H(div,Ω)
// û = u_0 on ∂Ω
// Note:
// f̂ := βu - σ
// û := -u
// -------------------------------------------------------------
// | | u | σ | û | f̂ | RHS |
// -------------------------------------------------------------
// | v |-(βu , ∇v) | (σ , ∇v) | | < f̂ ,v > | (f,v) |
// | | | | | | |
// | τ | (u ,∇⋅τ) | 1/ε(σ , τ)| <û,τ⋅n> | | 0 |
// where (v,τ) ∈ H^1(Ω_h) × H(div,Ω_h)
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
enum prob_type
{
polynomial,
EJ,
general
};
enum test_norm_type
{
standard,
adjoint_graph,
robust
};
prob_type prob;
test_norm_type test_norm;
Vector beta;
double epsilon;
// Function returns the solution u, and gradient du and the Laplacian d2u
void solution(const Vector & x, double & u, Vector & du, double & d2u);
double exact_u(const Vector & X);
void exact_sigma(const Vector & X, Vector & sigma);
double exact_hatu(const Vector & X);
void exact_hatf(const Vector & X, Vector & hatf);
double f_exact(const Vector & X);
int main(int argc, char *argv[])
{
Mpi::Init();
int num_procs = Mpi::WorldSize();
int myid = Mpi::WorldRank();
Hypre::Init();
// 1. Parse command-line options.
const char *mesh_file = "../../../data/inline-quad.mesh";
int order = 1;
int delta_order = 1;
int ref = 1;
bool visualization = true;
int iprob = 0;
int itest_norm = 0;
double theta = 0.7;
bool static_cond = false;
epsilon = 1e0;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree).");
args.AddOption(&delta_order, "-do", "--delta_order",
"Order enrichment for DPG test space.");
args.AddOption(&epsilon, "-eps", "--epsilon",
"Epsilon coefficient");
args.AddOption(&ref, "-ref", "--num_refinements",
"Number of uniform refinements");
args.AddOption(&theta, "-theta", "--theta",
"Theta parameter for AMR");
args.AddOption(&iprob, "-prob", "--problem", "Problem case"
" 0: lshape, 1: General");
args.AddOption(&itest_norm, "-test-norm", "--test-norm", "Choice of test norm"
" 0: Standard, 1: Adjoint Graph, 2: Robust");
args.AddOption(&beta, "-beta", "--beta",
"Vector Coefficient beta");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
if (myid == 0)
{
args.PrintUsage(cout);
}
return 1;
}
if (myid == 0)
{
args.PrintOptions(cout);
}
if (iprob > 2) { iprob = 2; }
prob = (prob_type)iprob;
test_norm = (test_norm_type)itest_norm;
if (prob == prob_type::EJ)
{
mesh_file = "../../../data/inline-quad.mesh";
}
Mesh mesh(mesh_file, 1, 1);
int dim = mesh.Dimension();
if (beta.Size() == 0)
{
beta.SetSize(dim);
beta[0] = 1.;
beta[1] = 0.;
}
mesh.EnsureNCMesh();
ParMesh pmesh(MPI_COMM_WORLD, mesh);
mesh.Clear();
// Define spaces
// L2 space for u
FiniteElementCollection *u_fec = new L2_FECollection(order-1,dim);
ParFiniteElementSpace *u_fes = new ParFiniteElementSpace(&pmesh,u_fec);
// Vector L2 space for σ
FiniteElementCollection *sigma_fec = new L2_FECollection(order-1,dim);
ParFiniteElementSpace *sigma_fes = new ParFiniteElementSpace(&pmesh,sigma_fec, dim);
// H^1/2 space for û
FiniteElementCollection * hatu_fec = new H1_Trace_FECollection(order,dim);
ParFiniteElementSpace *hatu_fes = new ParFiniteElementSpace(&pmesh,hatu_fec);
// H^-1/2 space for σ̂
FiniteElementCollection * hatf_fec = new RT_Trace_FECollection(order-1,dim);
ParFiniteElementSpace *hatf_fes = new ParFiniteElementSpace(&pmesh,hatf_fec);
// testspace fe collections
int test_order = order+delta_order;
FiniteElementCollection * v_fec = new H1_FECollection(test_order, dim);
FiniteElementCollection * tau_fec = new RT_FECollection(test_order-1, dim);
// Coefficients
ConstantCoefficient one(1.0);
ConstantCoefficient negone(-1.0);
ConstantCoefficient eps(epsilon);
ConstantCoefficient eps1(1./epsilon);
ConstantCoefficient negeps1(-1./epsilon);
ConstantCoefficient eps2(1/(epsilon*epsilon));
ConstantCoefficient negeps(-epsilon);
VectorConstantCoefficient betacoeff(beta);
Vector negbeta = beta;
negbeta.Neg();
DenseMatrix bbt(beta.Size());
MultVVt(beta, bbt);
MatrixConstantCoefficient bbtcoeff(bbt);
VectorConstantCoefficient negbetacoeff(negbeta);
// Normal equation weak formulation
Array<ParFiniteElementSpace * > trial_fes;
Array<FiniteElementCollection * > test_fec;
trial_fes.Append(u_fes);
trial_fes.Append(sigma_fes);
trial_fes.Append(hatu_fes);
trial_fes.Append(hatf_fes);
test_fec.Append(v_fec);
test_fec.Append(tau_fec);
ParNormalEquations * a = new ParNormalEquations(trial_fes,test_fec);
a->StoreMatrices(true);
//-(βu , ∇v)
a->AddTrialIntegrator(new MixedScalarWeakDivergenceIntegrator(betacoeff),0,0);
// (σ,∇ v)
a->AddTrialIntegrator(new TransposeIntegrator(new GradientIntegrator(one)),1,0);
// (u ,∇⋅τ)
a->AddTrialIntegrator(new MixedScalarWeakGradientIntegrator(negone),0,1);
// 1/ε (σ,τ)
a->AddTrialIntegrator(new TransposeIntegrator(new VectorFEMassIntegrator(eps1)),1,1);
// <û,τ⋅n>
a->AddTrialIntegrator(new NormalTraceIntegrator,2,1);
// <f̂ ,v>
a->AddTrialIntegrator(new TraceIntegrator,3,0);
FiniteElementCollection *coeff_fec = new L2_FECollection(0,dim);
ParFiniteElementSpace *coeff_fes = new ParFiniteElementSpace(&pmesh,coeff_fec);
ParGridFunction c1_gf, c2_gf;
GridFunctionCoefficient c1_coeff(&c1_gf);
GridFunctionCoefficient c2_coeff(&c2_gf);
switch (test_norm)
{
case standard:
{
if (myid == 0)
{
mfem::out << "\n Test norm: Standard" << endl;
}
// (∇v,∇δv)
a->AddTestIntegrator(new DiffusionIntegrator(one),0,0);
// (v,δv)
a->AddTestIntegrator(new MassIntegrator(one),0,0);
// (∇⋅τ,∇⋅δτ)
a->AddTestIntegrator(new DivDivIntegrator(one),1,1);
// (τ,δτ)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),1,1);
}
break;
case adjoint_graph:
{
if (myid == 0)
{
mfem::out << "\n Test norm: Adjoint Graph" << endl;
}
// (∇v,∇δv)
a->AddTestIntegrator(new DiffusionIntegrator(one),0,0);
// (β⋅∇v, β⋅∇δv)
a->AddTestIntegrator(new DiffusionIntegrator(bbtcoeff), 0,0);
// (v,δv)
a->AddTestIntegrator(new MassIntegrator(one),0,0);
// (∇⋅τ,∇⋅δτ)
a->AddTestIntegrator(new DivDivIntegrator(one),1,1);
// (τ,δτ)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),1,1);
// 1/ε^2 (τ,δτ)
a->AddTestIntegrator(new VectorFEMassIntegrator(eps2),1,1);
// 1/ε (∇v, δτ)
a->AddTestIntegrator(new MixedVectorGradientIntegrator(eps1),0,1);
// - (β ⋅ ∇v,∇⋅δτ)
a->AddTestIntegrator(new MixedGradDivIntegrator(betacoeff),0,1);
// 1/ε (τ,∇δv)
a->AddTestIntegrator(new MixedVectorWeakDivergenceIntegrator(negeps1),1,0);
// -(β ∇⋅τ ,∇⋅δv)
a->AddTestIntegrator(new MixedDivGradIntegrator(betacoeff),1,0);
}
break;
default:
{
if (myid == 0)
{
mfem::out << "\n Test norm: Robust" << endl;
}
c1_gf.SetSpace(coeff_fes);
c2_gf.SetSpace(coeff_fes);
Array<int> dofs;
for (int i =0; i < pmesh.GetNE(); i++)
{
double volume = pmesh.GetElementVolume(i);
double c1 = min(epsilon/volume, 1.);
double c2 = min(1./epsilon, 1./volume);
coeff_fes->GetElementDofs(i,dofs);
c1_gf.SetSubVector(dofs,c1);
c2_gf.SetSubVector(dofs,c2);
}
// c1 (v,δv)
a->AddTestIntegrator(new MassIntegrator(c1_coeff),0,0);
// ε (∇v,∇δv)
a->AddTestIntegrator(new DiffusionIntegrator(eps),0,0);
// (β⋅∇v, β⋅∇δv)
a->AddTestIntegrator(new DiffusionIntegrator(bbtcoeff), 0,0);
// c2 (τ,δτ)
a->AddTestIntegrator(new VectorFEMassIntegrator(c2_coeff),1,1);
// (∇⋅τ,∇⋅δτ)
a->AddTestIntegrator(new DivDivIntegrator(one),1,1);
}
break;
}
FunctionCoefficient f(f_exact);
// if (prob != prob_type::EJ)
// {
a->AddDomainLFIntegrator(new DomainLFIntegrator(f),0);
// }
FunctionCoefficient hatuex(exact_hatu);
VectorFunctionCoefficient hatfex(dim,exact_hatf);
Array<int> elements_to_refine;
FunctionCoefficient uex(exact_u);
VectorFunctionCoefficient sigmaex(dim,exact_sigma);
ParGridFunction hatu_gf;
ParGridFunction hatf_gf;
// socketstream uex_out;
socketstream u_out;
// socketstream sigma_out;
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
u_out.open(vishost, visport);
// uex_out.open(vishost, visport);
// sigma_out.open(vishost, visport);
}
double res0 = 0.;
double err0 = 0.;
int dof0;
if (myid == 0)
{
mfem::out << " Refinement |"
<< " Dofs |"
<< " L2 Error |"
<< " Rate |"
<< " Residual |"
<< " Rate |"
<< " CG iter |" << endl;
mfem::out << " --------------------"
<< "-------------------"
<< "-------------------"
<< "-------------------" << endl;
}
for (int i = 0; i<ref; i++)
{
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
Array<int> ess_tdof_list_uhat;
Array<int> ess_tdof_list_fhat;
Array<int> ess_bdr_uhat;
Array<int> ess_bdr_fhat;
if (pmesh.bdr_attributes.Size())
{
ess_bdr_uhat.SetSize(pmesh.bdr_attributes.Max());
ess_bdr_fhat.SetSize(pmesh.bdr_attributes.Max());
// ess_bdr_uhat = 1;
// ess_bdr_fhat = 0;
ess_bdr_uhat = 0;
ess_bdr_fhat = 1;
ess_bdr_uhat[1] = 1;
ess_bdr_fhat[1] = 0;
hatu_fes->GetEssentialTrueDofs(ess_bdr_uhat, ess_tdof_list_uhat);
hatf_fes->GetEssentialTrueDofs(ess_bdr_fhat, ess_tdof_list_fhat);
}
// shift the ess_tdofs
int n = ess_tdof_list_uhat.Size();
int m = ess_tdof_list_fhat.Size();
Array<int> ess_tdof_list(n+m);
for (int j = 0; j < n; j++)
{
ess_tdof_list[j] = ess_tdof_list_uhat[j]
+ u_fes->GetTrueVSize()
+ sigma_fes->GetTrueVSize();
}
for (int j = 0; j < m; j++)
{
ess_tdof_list[j+n] = ess_tdof_list_fhat[j]
+ u_fes->GetTrueVSize()
+ sigma_fes->GetTrueVSize()
+ hatu_fes->GetTrueVSize();
}
Array<int> offsets(5);
offsets[0] = 0;
offsets[1] = u_fes->GetVSize();
offsets[2] = sigma_fes->GetVSize();
offsets[3] = hatu_fes->GetVSize();
offsets[4] = hatf_fes->GetVSize();
offsets.PartialSum();
BlockVector x(offsets);
x = 0.0;
hatu_gf.MakeRef(hatu_fes,x.GetBlock(2));
hatu_gf.ProjectBdrCoefficient(hatuex,ess_bdr_uhat);
hatf_gf.MakeRef(hatf_fes,x.GetBlock(3));
hatf_gf.ProjectBdrCoefficientNormal(hatfex,ess_bdr_fhat);
OperatorPtr Ah;
Vector X,B;
a->FormLinearSystem(ess_tdof_list,x,Ah,X,B);
BlockOperator * A = Ah.As<BlockOperator>();
BlockDiagonalPreconditioner * M = new BlockDiagonalPreconditioner(A->RowOffsets());
M->owns_blocks = 1;
int skip = 0;
if (!static_cond)
{
HypreBoomerAMG * amg0 = new HypreBoomerAMG((HypreParMatrix &)A->GetBlock(0,0));
HypreBoomerAMG * amg1 = new HypreBoomerAMG((HypreParMatrix &)A->GetBlock(1,1));
amg0->SetPrintLevel(0);
amg1->SetPrintLevel(0);
M->SetDiagonalBlock(0,amg0);
M->SetDiagonalBlock(1,amg1);
skip = 2;
}
HypreBoomerAMG * amg2 = new HypreBoomerAMG((HypreParMatrix &)A->GetBlock(skip,skip));
amg2->SetPrintLevel(0);
M->SetDiagonalBlock(skip,amg2);
HypreSolver * prec;
if (dim == 2)
{
prec = new HypreAMS((HypreParMatrix &)A->GetBlock(skip+1,skip+1), hatf_fes);
}
else
{
prec = new HypreADS((HypreParMatrix &)A->GetBlock(skip+1,skip+1), hatf_fes);
}
M->SetDiagonalBlock(skip+1,prec);
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-6);
cg.SetMaxIter(200000);
cg.SetPrintLevel(-1);
cg.SetPreconditioner(*M);
cg.SetOperator(*A);
cg.Mult(B, X);
int num_iter = cg.GetNumIterations();
delete M;
a->RecoverFEMSolution(X,x);
Vector & residuals = a->ComputeResidual(x);
double residual = residuals.Norml2();
double maxresidual = residuals.Max();
double gresidual = residual * residual;
MPI_Allreduce(MPI_IN_PLACE,&maxresidual,1,MPI_DOUBLE,MPI_MAX,MPI_COMM_WORLD);
MPI_Allreduce(MPI_IN_PLACE,&gresidual,1,MPI_DOUBLE,MPI_SUM,MPI_COMM_WORLD);
gresidual = sqrt(gresidual);
elements_to_refine.SetSize(0);
for (int iel = 0; iel<pmesh.GetNE(); iel++)
{
if (residuals[iel] > theta * maxresidual)
{
elements_to_refine.Append(iel);
}
}
ParGridFunction u_gf;
u_gf.MakeRef(u_fes,x.GetBlock(0));
ParGridFunction sigma_gf;
sigma_gf.MakeRef(sigma_fes,x.GetBlock(1));
int dofs = u_fes->GlobalTrueVSize()
+ sigma_fes->GlobalTrueVSize()
+ hatu_fes->GlobalTrueVSize()
+ hatf_fes->GlobalTrueVSize();
double u_err = u_gf.ComputeL2Error(uex);
double sigma_err = sigma_gf.ComputeL2Error(sigmaex);
double L2Error = sqrt(u_err*u_err + sigma_err*sigma_err);
double rate_err = (i) ? dim*log(err0/L2Error)/log((double)dof0/dofs) : 0.0;
double rate_res = (i) ? dim*log(res0/gresidual)/log((double)dof0/dofs) : 0.0;
err0 = L2Error;
res0 = gresidual;
dof0 = dofs;
if (myid == 0)
{
mfem::out << std::right << std::setw(11) << i << " | "
<< std::setw(10) << dof0 << " | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << err0 << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_err << " | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << res0 << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_res << " | "
<< std::setw(6) << std::fixed << num_iter << " | "
<< std::resetiosflags(std::ios::showbase)
<< std::endl;
}
if (visualization)
{
// uex_out.precision(8);
// uex_out << "parallel " << num_procs << " " << myid << "\n";
// uex_out << "solution\n" << pmesh << uex_gf <<
// "window_title 'Exact u' "
// << flush;
u_out << "parallel " << num_procs << " " << myid << "\n";
u_out.precision(8);
u_out << "solution\n" << pmesh << u_gf <<
"window_title 'Numerical u' "
<< flush;
// sigma_out << "parallel " << num_procs << " " << myid << "\n";
// sigma_out.precision(8);
// sigma_out << "solution\n" << pmesh << sigma_gf <<
// "window_title 'Numerical flux' "
// << flush;
}
if (i == ref-1)
break;
pmesh.GeneralRefinement(elements_to_refine,1,1);
for (int i =0; i<trial_fes.Size(); i++)
{
trial_fes[i]->Update(false);
}
a->Update();
if (test_norm == test_norm_type::robust)
{
coeff_fes->Update();
c1_gf.Update();
c2_gf.Update();
Array<int> edofs;
for (int i = 0; i < pmesh.GetNE(); i++)
{
double volume = pmesh.GetElementVolume(i);
double c1 = min(epsilon/volume, 1.);
double c2 = min(1./epsilon, 1./volume);
coeff_fes->GetElementDofs(i,edofs);
c1_gf.SetSubVector(edofs,c1);
c2_gf.SetSubVector(edofs,c2);
}
}
}
delete coeff_fes;
delete coeff_fec;
delete a;
delete tau_fec;
delete v_fec;
delete hatf_fes;
delete hatf_fec;
delete hatu_fes;
delete hatu_fec;
delete sigma_fec;
delete sigma_fes;
delete u_fec;
delete u_fes;
return 0;
}
void solution(const Vector & X, double & u, Vector & du, double & d2u)
{
double x = X[0];
double y = X[1];
double z = 0.;
if (X.Size() == 3) z = X[2];
du.SetSize(X.Size());
du = 0.;
d2u = 0.;
switch(prob)
{
case polynomial:
{
int n=2;
int m=2;
u = pow(x,n)*pow(y,m);
du[0] = n * pow(x,n-1) * pow(y,m);
du[1] = m * pow(x,n) * pow(y,m-1);
d2u = n * (n-1) * pow(x,n-2) * pow(y,m)
+ m * (m-1) * pow(x,n) * pow(y,m-2);
}
break;
case EJ:
{
double alpha = sqrt(1. + 4. * epsilon * epsilon * M_PI * M_PI);
double r1 = (1. + alpha) / (2.*epsilon);
double r2 = (1. - alpha) / (2.*epsilon);
double denom = exp(-r2) - exp(-r1);
double g1 = exp(r2*(x-1.));
double g1_x = r2*g1;
double g1_xx = r2*g1_x;
double g2 = exp(r1*(x-1.));
double g2_x = r1*g2;
double g2_xx = r1*g2_x;
double g = g1-g2;
double g_x = g1_x - g2_x;
double g_xx = g1_xx - g2_xx;
u = g * cos(M_PI * y)/denom;
double u_x = g_x * cos(M_PI * y)/denom;
double u_xx = g_xx * cos(M_PI * y)/denom;
double u_y = -M_PI * g * sin(M_PI*y)/denom;
double u_yy = -M_PI * M_PI * u;
du[0] = u_x;
du[1] = u_y;
d2u = u_xx + u_yy;
}
break;
default:
{
double alpha = M_PI * (x + y + z);
u = sin(alpha);
du.SetSize(X.Size());
for (int i = 0; i<du.Size(); i++)
{
du[i] = M_PI * cos(alpha);
}
d2u = - M_PI*M_PI * u * du.Size();
}
break;
}
}
double exact_u(const Vector & X)
{
double u, d2u;
Vector du;
solution(X,u,du,d2u);
return u;
}
void exact_sigma(const Vector & X, Vector & sigma)
{
double u, d2u;
Vector du;
solution(X,u,du,d2u);
// σ = ε ∇ u
sigma = du;
sigma *= epsilon;
}
double exact_hatu(const Vector & X)
{
return -exact_u(X);
}
void exact_hatf(const Vector & X, Vector & hatf)
{
Vector sigma;
exact_sigma(X,sigma);
double u = exact_u(X);
hatf.SetSize(X.Size());
for (int i = 0; i<hatf.Size(); i++)
{
hatf[i] = beta[i] * u - sigma[i];
}
}
double f_exact(const Vector & X)
{
// f = - εΔu + ∇⋅(βu)
double u, d2u;
Vector du;
solution(X,u,du,d2u);
double s = 0;
for (int i = 0; i<du.Size(); i++)
{
s += beta[i] * du[i];
}
return -epsilon * d2u + s;
}
+203
View File
@@ -0,0 +1,203 @@
// MFEM Fosls 1
//
// Compile with: make blkfosls
//
// - Δ u = f, in Ω
// u = 0, on ∂Ω
// First Order System
// ∇ u - σ = 0, in Ω
// - ∇⋅σ = f, in Ω
// u = 0, in ∂Ω
// FOSLS:
// minimize 1/2(||∇u - σ||^2 + ||∇ ⋅ σ - f||^2)
// -------------------------------------------------
// | | u | σ | RHS |
// -------------------------------------------------
// | v | (∇u,∇v) | -(σ,∇v) | 0 |
// | | | | |
// | τ | -(∇u,τ) | (∇⋅σ, ∇⋅τ) + (σ,τ) | -(f,∇⋅τ ) |
// where (u,τ) ∈ H^1(Ω) × H(div,Ω)
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
int main(int argc, char *argv[])
{
// 1. Parse command-line options.
const char *mesh_file = "../../../data/inline-quad.mesh";
int order = 1;
bool visualization = true;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree) or -1 for"
" isoparametric space.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
// 3. Read the mesh from the given mesh file. We can handle triangular,
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
// the same code.
Mesh mesh(mesh_file, 1, 1);
int dim = mesh.Dimension();
// 5. Define a finite element space on the mesh. Here we use continuous
// Lagrange finite elements of the specified order. If order < 1, we
// instead use an isoparametric/isogeometric space.
FiniteElementCollection *fec0 = new H1_FECollection(order, dim);
FiniteElementCollection *fec1 = new RT_FECollection(order-1, dim);
FiniteElementSpace fespace0(&mesh, fec0);
FiniteElementSpace fespace1(&mesh, fec1);
Array<FiniteElementSpace *> fespaces(2);
fespaces[0] = &fespace0;
fespaces[1] = &fespace1;
Array<int> ess_bdr;
Array<int> ess_tdof_list;
if (mesh.bdr_attributes.Size())
{
ess_bdr.SetSize(mesh.bdr_attributes.Max());
ess_bdr = 1;
fespaces[0]->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
BlockBilinearForm a(fespaces);
a.SetDiagonalPolicy(mfem::Operator::DIAG_KEEP);
cout << "H1 fespace = " << fespace0.GetVSize() << endl;
cout << "RT fespace = " << fespace1.GetVSize() << endl;
FiniteElementCollection *fec2 = new RT_Trace_FECollection(order-1, dim);
FiniteElementSpace RT_trace_fes(&mesh, fec2);
cout << "RT trace = " << RT_trace_fes.GetVSize() << endl;
// for (int i = 0; i<mesh.GetNE(); i++)
// {
// // const FiniteElement * fe = fespace1.GetFE(i);
// // fespace1.GetTraceElement()
// Array<int> faces, ori;
// mesh.GetElementEdges(i, faces, ori);
// for (int f = 0; f<faces.Size(); f++)
// {
// const FiniteElement * fe_trace = RT_trace_fes.GetFaceElement(faces[f]);
// cout << fe_trace->GetDof() << endl;
// Array<int> face_dofs;
// RT_trace_fes.GetFaceDofs(faces[f],face_dofs);
// cout << "face dofs = " << endl;
// face_dofs.Print();
// }
// // cout << fe->GetGeomType() << endl;
// Array<int> vdofs;
// RT_trace_fes.GetElementVDofs(i, vdofs);
// cout << "trace dofs = " << endl;
// vdofs.Print();
// fespace1.GetElementVDofs(i, vdofs);
// cout << "elem dofs = " << endl;
// vdofs.Print();
// cin.get();
// }
ConstantCoefficient one(1.0);
ConstantCoefficient negone(-1.0);
Array2D<BilinearFormIntegrator * > blfi(2,2);
blfi(0,0) = new DiffusionIntegrator(one);
blfi(0,1) = new MixedVectorWeakDivergenceIntegrator(one);
blfi(1,0) = new MixedVectorGradientIntegrator(negone);
BilinearFormIntegrator * divdiv = new DivDivIntegrator(one);
BilinearFormIntegrator * mass = new VectorFEMassIntegrator(one);
SumIntegrator * suminteg = new SumIntegrator();
suminteg->AddIntegrator(divdiv);
suminteg->AddIntegrator(mass);
blfi(1,1) = suminteg;
TestBlockBilinearFormIntegrator * integ = new TestBlockBilinearFormIntegrator();
integ->SetIntegrators(blfi);
a.AddDomainIntegrator(integ);
a.Assemble();
BlockLinearForm b(fespaces);
TestBlockLinearFormIntegrator * lininteg = new TestBlockLinearFormIntegrator();
Array<LinearFormIntegrator * > lfi(2);
lfi[0] = nullptr;
lfi[1] = new VectorFEDomainLFDivIntegrator(negone);
lininteg->SetIntegrators(lfi);
b.AddDomainIntegrator(lininteg);
b.Assemble();
// need to implement blkgridfunction later but for now Vector would do
int size = 0;
for (int i = 0; i<fespaces.Size(); i++)
{
size += fespaces[i]->GetVSize();
}
Vector x(size);
x = 0.0;
OperatorPtr A;
Vector X,B;
a.FormLinearSystem(ess_tdof_list,x,b,A,X,B);
GSSmoother M((SparseMatrix&)(*A));
CGSolver cg;
cg.SetRelTol(1e-6);
cg.SetMaxIter(200);
cg.SetPrintLevel(1);
cg.SetPreconditioner(M);
cg.SetOperator(*A);
cg.Mult(B, X);
a.RecoverFEMSolution(X,b,x);
GridFunction u_gf, sigma_gf;
double *data = x.GetData();
u_gf.MakeRef(fespaces[0],&data[0]);
sigma_gf.MakeRef(fespaces[1],&data[fespaces[0]->GetVSize()]);
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream solu_sock(vishost, visport);
solu_sock.precision(8);
solu_sock << "solution\n" << mesh << u_gf <<
"window_title 'Numerical u' "
<< flush;
socketstream sols_sock(vishost, visport);
sols_sock.precision(8);
sols_sock << "solution\n" << mesh << sigma_gf <<
"window_title 'Numerical sigma' "
<< flush;
}
delete fec0;
return 0;
}
+223
View File
@@ -0,0 +1,223 @@
// MFEM Fosls example
//
// Compile with: make fosls
//
// - Δ u = f, in Ω
// u = 0, on ∂Ω
// First Order System
// ∇ u - σ = 0, in Ω
// - ∇⋅σ = f, in Ω
// u = 0, in ∂Ω
// FOSLS:
// minimize 1/2(||∇u - σ||^2 + ||∇ ⋅ σ - f||^2)
// -------------------------------------------------
// | | u | σ | RHS |
// -------------------------------------------------
// | v | (∇u,∇v) | -(σ,∇v) | 0 |
// | | | | |
// | τ | -(∇u,τ) | (∇⋅σ, ∇⋅τ) + (σ,τ) | -(f,∇⋅τ ) |
// where (u,τ) ∈ H^1(Ω) × H(div,Ω)
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
int main(int argc, char *argv[])
{
// 1. Parse command-line options.
const char *mesh_file = "../../../data/inline-quad.mesh";
int order = 1;
bool visualization = true;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree) or -1 for"
" isoparametric space.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
// 3. Read the mesh from the given mesh file. We can handle triangular,
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
// the same code.
Mesh mesh(mesh_file, 1, 1);
int dim = mesh.Dimension();
FiniteElementCollection *H1fec = new H1_FECollection(order,dim);
FiniteElementSpace *H1fes = new FiniteElementSpace(&mesh, H1fec);
FiniteElementCollection *RTfec = new RT_FECollection(order-1,dim);
FiniteElementSpace *RTfes = new FiniteElementSpace(&mesh, RTfec);
// Coefficients
ConstantCoefficient one(1.0);
ConstantCoefficient negone(-1.0);
// Linear forms
LinearForm b_0(H1fes);
// (f,∇⋅τ )
LinearForm b_1(RTfes);
b_1.AddDomainIntegrator(new VectorFEDomainLFDivIntegrator(negone));
// Bilinear forms
// (∇u,∇v)
BilinearForm a_00(H1fes);
a_00.AddDomainIntegrator(new DiffusionIntegrator(one));
// -(σ,∇v)
MixedBilinearForm a_01(RTfes, H1fes);
a_01.AddDomainIntegrator(new MixedVectorWeakDivergenceIntegrator(
one)); // (-1 is included)
// // -(∇u,τ)
// MixedBilinearForm()
MixedBilinearForm a_10(H1fes, RTfes);
a_10.AddDomainIntegrator(new MixedVectorGradientIntegrator(negone));
// (∇⋅σ, ∇⋅τ) + (σ,τ)
BilinearForm a_11(RTfes);
a_11.AddDomainIntegrator(new DivDivIntegrator(one));
a_11.AddDomainIntegrator(new VectorFEMassIntegrator(one));
Array<int> ess_bdr;
Array<int> ess_tdof_list;
if (mesh.bdr_attributes.Size())
{
ess_bdr.SetSize(mesh.bdr_attributes.Max());
ess_bdr = 1;
H1fes->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
Array<int> block_Toffsets(3);
block_Toffsets[0] = 0;
block_Toffsets[1] = H1fes->GetTrueVSize();
block_Toffsets[2] = RTfes->GetTrueVSize();
block_Toffsets.PartialSum();
Vector rhs_H1(H1fes->GetVSize()); rhs_H1 = 0.;
Vector rhs_RT(RTfes->GetVSize()); rhs_RT = 0.;
Vector x_H1(H1fes->GetVSize()); x_H1 = 0.;
Vector x_RT(RTfes->GetVSize()); x_RT = 0.;
Vector RHS_H1(H1fes->GetTrueVSize()); RHS_H1 = 0.0;
Vector RHS_RT(RTfes->GetTrueVSize()); RHS_RT = 0.0;
Vector X_H1(H1fes->GetTrueVSize()); X_H1 = 0.0;
Vector X_RT(RTfes->GetTrueVSize()); X_RT = 0.0;
b_0.Update(H1fes,rhs_H1,0);
b_0.Assemble();
b_1.Update(RTfes,rhs_RT,0);
b_1.Assemble();
// Assembly and BC
a_00.Assemble();
SparseMatrix A_00;
a_00.FormLinearSystem(ess_tdof_list,x_H1,rhs_H1,
A_00,X_H1,RHS_H1);
a_01.Assemble();
SparseMatrix A_01;
Array<int> empty;
a_01.FormRectangularSystemMatrix(empty, ess_tdof_list,A_01);
a_10.Assemble();
SparseMatrix A_10;
a_10.FormRectangularLinearSystem(ess_tdof_list,empty,x_H1,rhs_RT,
A_10,X_H1,RHS_RT);
a_11.Assemble();
SparseMatrix A_11;
a_11.FormSystemMatrix(empty,A_11);
BlockMatrix BlockA(block_Toffsets);
BlockA.SetBlock(0,0,&A_00);
BlockA.SetBlock(0,1,&A_01);
BlockA.SetBlock(1,0,&A_10);
BlockA.SetBlock(1,1,&A_11);
BlockVector RHS(block_Toffsets);
RHS.GetBlock(0) = RHS_H1;
RHS.GetBlock(1) = RHS_RT;
BlockVector X(block_Toffsets);
X.GetBlock(0) = X_H1;
X.GetBlock(1) = X_RT;
SparseMatrix * A = BlockA.CreateMonolithic();
GSSmoother M(*A);
CGSolver cg;
cg.SetRelTol(1e-6);
cg.SetMaxIter(2000);
cg.SetPrintLevel(1);
cg.SetPreconditioner(M);
cg.SetOperator(*A);
cg.Mult(RHS, X);
GridFunction u_gf(H1fes), sigma_gf(RTfes);
u_gf = 0.;
sigma_gf = 0.;
const SparseMatrix * P = H1fes->GetConformingProlongation();
if (P)
{
a_00.RecoverFEMSolution(X.GetBlock(0),rhs_H1,u_gf);
a_11.RecoverFEMSolution(X.GetBlock(1),rhs_RT,sigma_gf);
}
else
{
u_gf.MakeRef(X.GetBlock(0),0);
sigma_gf.MakeRef(X.GetBlock(1),0);
}
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream solu_sock(vishost, visport);
solu_sock.precision(8);
solu_sock << "solution\n" << mesh << u_gf <<
"window_title 'Numerical u' "
<< flush;
socketstream sols_sock(vishost, visport);
sols_sock.precision(8);
sols_sock << "solution\n" << mesh << sigma_gf <<
"window_title 'Numerical sigma' "
<< flush;
}
return 0;
}
+61
View File
@@ -0,0 +1,61 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Use the MFEM build directory
MFEM_DIR ?= ../../..
MFEM_BUILD_DIR ?= ../../..
SRC = $(if $(MFEM_DIR:../../..=),$(MFEM_DIR)/examples/dpg_tests/diffusion,)
CONFIG_MK = $(MFEM_BUILD_DIR)/config/config.mk
MFEM_LIB_FILE = mfem_is_not_built
-include $(CONFIG_MK)
SEQ_EXAMPLES = blkfosls fosls primal_dpg \
uw_dpg
PAR_EXAMPLES = uw_dpgp
ifeq ($(MFEM_USE_MPI),NO)
EXAMPLES = $(SEQ_EXAMPLES)
else
EXAMPLES = $(PAR_EXAMPLES) $(SEQ_EXAMPLES)
endif
.SUFFIXES:
.SUFFIXES: .o .cpp .mk
.PHONY: all clean clean-build clean-exec
# Remove built-in rule
%: %.cpp
# Replace the default implicit rule for *.cpp files
%: $(SRC)%.cpp $(MFEM_LIB_FILE) $(CONFIG_MK)
$(MFEM_CXX) $(MFEM_FLAGS) $< -o $@ $(MFEM_LIBS)
all: $(EXAMPLES)
MFEM_TESTS = EXAMPLES
include $(MFEM_TEST_MK)
# Testing: Parallel vs. serial runs
RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
%-test-par: %
@$(call mfem-test,$<, $(RUN_MPI), Parallel example)
%-test-seq: %
@$(call mfem-test,$<,, Serial example)
clean: clean-build clean-exec
clean-build:
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
rm -rf *.dSYM *.TVD.*breakpoints
rm -rf ParaView
clean-exec:
+179
View File
@@ -0,0 +1,179 @@
// MFEM primal_dpg example
//
// Compile with: make primal_dpg
//
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
int main(int argc, char *argv[])
{
// 1. Parse command line options
const char *mesh_file = "../../../data/star.mesh";
int order = 1;
bool static_cond = false;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh", "Mesh file to use.");
args.AddOption(&order, "-o", "--order", "Finite element polynomial degree");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.ParseCheck();
// 2. Read the mesh from the given mesh file, and refine once uniformly.
Mesh mesh(mesh_file);
// mesh.UniformRefinement();
// 3. Define a finite element space on the mesh. Here we use H1 continuous
// high-order Lagrange finite elements of the given order.
H1_FECollection fec(order, mesh.Dimension());
FiniteElementSpace H1fes(&mesh, &fec);
RT_Trace_FECollection trace_fec(order-1, mesh.Dimension());
FiniteElementSpace RTtrace_fes(&mesh, &trace_fec);
int dim = mesh.Dimension();
int test_order = order;
if (dim == 2 && (order%2 == 0 || (mesh.MeshGenerator() & 2 && order > 1)))
{
test_order++;
}
test_order++;
H1_FECollection test_fec(test_order,mesh.Dimension());
Array<FiniteElementSpace * > trial_fes;
Array<FiniteElementCollection * > test_fecs;
trial_fes.Append(&H1fes);
trial_fes.Append(&RTtrace_fes);
test_fecs.Append(&test_fec);
NormalEquations * a = new NormalEquations(trial_fes,test_fecs);
ConstantCoefficient one(1.0);
a->AddTrialIntegrator(new DiffusionIntegrator(one),0,0);
a->AddTrialIntegrator(new TraceIntegrator,1,0);
BilinearFormIntegrator * diffusion = new DiffusionIntegrator(one);
BilinearFormIntegrator * mass = new MassIntegrator(one);
a->AddTestIntegrator(diffusion,0,0);
a->AddTestIntegrator(mass,0,0);
a->AddDomainLFIntegrator(new DomainLFIntegrator(one),0);
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
Array<int> ess_tdof_list;
if (mesh.bdr_attributes.Size())
{
Array<int> ess_bdr(mesh.bdr_attributes.Max());
ess_bdr = 1;
H1fes.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
Vector X,B;
OperatorPtr Ah;
int size = H1fes.GetVSize() + RTtrace_fes.GetVSize();
Vector x(size);
x = 0.0;
a->FormLinearSystem(ess_tdof_list,x,Ah,X,B);
BlockMatrix * A = (BlockMatrix *)(Ah.Ptr());
BlockDiagonalPreconditioner * M = new BlockDiagonalPreconditioner(A->RowOffsets());
M->owns_blocks = 1;
for (int i=0; i<A->NumRowBlocks(); i++)
{
M->SetDiagonalBlock(i,new UMFPackSolver(A->GetBlock(i,i)));
}
CGSolver cg;
cg.SetRelTol(1e-6);
cg.SetMaxIter(2000);
cg.SetPrintLevel(3);
cg.SetPreconditioner(*M);
cg.SetOperator(*A);
cg.Mult(B, X);
delete M;
a->RecoverFEMSolution(X,x);
GridFunction u_gf;
double *data = x.GetData();
u_gf.MakeRef(&H1fes,data);
GridFunction s_gf;
s_gf.MakeRef(&RTtrace_fes,&data[H1fes.GetVSize()]);
RT_FECollection RTfec(order-1, mesh.Dimension());
FiniteElementSpace RTfes(&mesh, &RTfec);
GridFunction sigma_gf(&RTfes);
sigma_gf = 0.0;
for (int i = 0; i<mesh.GetNE(); i++)
{
Array<int> strace_dofs;
Array<int> trace_dofs;
Vector dofs;
RTtrace_fes.GetElementDofs(i,trace_dofs);
strace_dofs.SetSize(trace_dofs.Size());
// shift dofs;
for (int j = 0; j< trace_dofs.Size(); j++)
{
int offset = trace_dofs[j] < 0 ? -H1fes.GetVSize() : H1fes.GetVSize();
strace_dofs[j] = offset + trace_dofs[j];
}
x.GetSubVector(strace_dofs, dofs);
sigma_gf.SetSubVector(trace_dofs,dofs);
}
ParaViewDataCollection paraview_dc("DPG_example", &mesh);
paraview_dc.SetPrefixPath("ParaView");
paraview_dc.SetLevelsOfDetail(order);
paraview_dc.SetCycle(0);
paraview_dc.SetDataFormat(VTKFormat::BINARY);
paraview_dc.SetHighOrderOutput(true);
paraview_dc.SetTime(0.0); // set the time
paraview_dc.RegisterField("field",&u_gf);
paraview_dc.RegisterField("flux",&sigma_gf);
// paraview_dc.RegisterField("flux",&s_gf);
paraview_dc.Save();
char vishost[] = "localhost";
int visport = 19916;
socketstream solu_sock(vishost, visport);
solu_sock.precision(8);
solu_sock << "solution\n" << mesh << u_gf <<
"window_title 'Numerical u' "
<< flush;
socketstream soltrace_sock(vishost, visport);
soltrace_sock.precision(8);
soltrace_sock << "solution\n" << mesh << sigma_gf <<
"window_title 'Flux sigma_n' "
<< flush;
}
+403
View File
@@ -0,0 +1,403 @@
// MFEM Ultraweak DPG example
//
// Compile with: make uw_dpg
//
// sample runs
// ./uw_dpg -m ../lshape2.mesh -o 2 -ref 20 -graph-norm -do 1 -prob 0
// - Δ u = f, in Ω
// u = u_0, on ∂Ω
// First Order System
// ∇ u - σ = 0, in Ω
// - ∇⋅σ = f, in Ω
// u = 0, in ∂Ω
// UW-DPG:
//
// u ∈ L^2(Ω), σ ∈ (L^2(Ω))^dim
// û ∈ H^1/2, σ̂ ∈ H^-1/2
// -(u , ∇⋅τ) - (σ , τ) + < û, τ⋅n> = 0, ∀ τ ∈ H(div,Ω)
// (σ , ∇ v) + < σ̂, v > = (f,v) ∀ v ∈ H^1(Ω)
// û = 0 on ∂Ω
// Note:
// û := u
// σ̂ := -σ
// -------------------------------------------------------------
// | | u | σ | û | σ̂ | RHS |
// -------------------------------------------------------------
// | τ | -(u,∇⋅τ) | -(σ,τ) | < û, τ⋅n> | | 0 |
// | | | | | | |
// | v | | (σ,∇ v) | | <σ̂,v> | (f,v) |
// where (τ,v) ∈ H(div,Ω) × H^1(Ω)
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
enum prob_type
{
lshape,
general
};
prob_type prob;
void solution(const Vector & X, double & u, Vector & du, double & d2u);
double exact_u(const Vector & X)
{
double u, d2u;
Vector du;
solution(X,u,du,d2u);
return u;
}
void exact_sigma(const Vector & X, Vector & sigma)
{
double u, d2u;
Vector du;
solution(X,u,du,d2u);
// σ = ∇ u
sigma = du;
}
double exact_hatu(const Vector & X)
{
return exact_u(X);
}
void exact_hatsigma(const Vector & X, Vector & hatsigma)
{
exact_sigma(X,hatsigma);
hatsigma *= -1.;
}
double f_exact(const Vector & X)
{
double u, d2u;
Vector du;
solution(X,u,du,d2u);
return -d2u;
}
int main(int argc, char *argv[])
{
// 1. Parse command-line options.
const char *mesh_file = "../../../data/inline-quad.mesh";
int order = 1;
int delta_order = 1;
int ref = 1;
bool adjoint_graph_norm = false;
bool visualization = true;
int iprob = 0;
bool static_cond = false;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree).");
args.AddOption(&delta_order, "-do", "--delta_order",
"Order enrichment for DPG test space.");
args.AddOption(&ref, "-ref", "--num_refinements",
"Number of uniform refinements");
args.AddOption(&adjoint_graph_norm, "-graph-norm", "--adjoint-graph-norm",
"-no-graph-norm", "--no-adjoint-graph-norm",
"Enable or disable Adjoint Graph Norm on the test space");
args.AddOption(&iprob, "-prob", "--problem", "Problem case"
" 0: lshape, 1: General");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
if (iprob > 1) { iprob = 1; }
prob = (prob_type)iprob;
if (prob == prob_type::lshape)
{
mesh_file = "../lshape2.mesh";
}
Mesh mesh(mesh_file, 1, 1);
int dim = mesh.Dimension();
mesh.UniformRefinement();
// Define spaces
// L2 space for u
FiniteElementCollection *u_fec = new L2_FECollection(order-1,dim);
FiniteElementSpace *u_fes = new FiniteElementSpace(&mesh,u_fec);
// Vector L2 space for σ
FiniteElementCollection *sigma_fec = new L2_FECollection(order-1,dim);
FiniteElementSpace *sigma_fes = new FiniteElementSpace(&mesh,sigma_fec, dim);
// H^1/2 space for û
FiniteElementCollection * hatu_fec = new H1_Trace_FECollection(order,dim);
FiniteElementSpace *hatu_fes = new FiniteElementSpace(&mesh,hatu_fec);
// H^-1/2 space for σ̂
FiniteElementCollection * hatsigma_fec = new RT_Trace_FECollection(order-1,dim);
FiniteElementSpace *hatsigma_fes = new FiniteElementSpace(&mesh,hatsigma_fec);
// testspace fe collections
int test_order = order+delta_order;
FiniteElementCollection * tau_fec = new RT_FECollection(test_order-1, dim);
FiniteElementCollection * v_fec = new H1_FECollection(test_order, dim);
// Coefficients
ConstantCoefficient one(1.0);
ConstantCoefficient negone(-1.0);
// Normal equation weak formulation
Array<FiniteElementSpace * > trial_fes;
Array<FiniteElementCollection * > test_fec;
trial_fes.Append(u_fes);
trial_fes.Append(sigma_fes);
trial_fes.Append(hatu_fes);
trial_fes.Append(hatsigma_fes);
test_fec.Append(tau_fec);
test_fec.Append(v_fec);
NormalEquations * a = new NormalEquations(trial_fes,test_fec);
a->StoreMatrices(true);
// -(u,∇⋅τ)
a->AddTrialIntegrator(new MixedScalarWeakGradientIntegrator(one),0,0);
// -(σ,τ)
a->AddTrialIntegrator(new TransposeIntegrator(new VectorFEMassIntegrator(negone)),1,0);
// (σ,∇ v)
a->AddTrialIntegrator(new TransposeIntegrator(new GradientIntegrator(one)),1,1);
// <û,τ⋅n>
a->AddTrialIntegrator(new NormalTraceIntegrator,2,0);
// <σ̂,v>
a->AddTrialIntegrator(new TraceIntegrator,3,1);
// test integrators (space-induced norm for H(div) × H1)
// (∇⋅τ,∇⋅δτ)
a->AddTestIntegrator(new DivDivIntegrator(one),0,0);
// (τ,δτ)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),0,0);
// (∇v,∇δv)
a->AddTestIntegrator(new DiffusionIntegrator(one),1,1);
// (v,δv)
a->AddTestIntegrator(new MassIntegrator(one),1,1);
// additional terms for adjoint graph norm
if (adjoint_graph_norm)
{
// -(∇v,δτ)
a->AddTestIntegrator(new MixedVectorGradientIntegrator(negone),1,0);
// -(τ,∇δv)
a->AddTestIntegrator(new MixedVectorWeakDivergenceIntegrator(one),0,1);
// (τ,δτ)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),0,0);
}
// RHS
FunctionCoefficient f(f_exact);
if (prob == prob_type::general)
{
a->AddDomainLFIntegrator(new DomainLFIntegrator(f),1);
}
FunctionCoefficient hatuex(exact_hatu);
Array<int> elements_to_refine;
GridFunction hatu_gf;
socketstream u_out;
// socketstream sigma_out;
socketstream mesh_out;
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
u_out.open(vishost, visport);
// sigma_out.open(vishost, visport);
mesh_out.open(vishost, visport);
}
for (int iref = 0; iref<ref; iref++)
{
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
Array<int> ess_tdof_list;
Array<int> ess_bdr;
if (mesh.bdr_attributes.Size())
{
ess_bdr.SetSize(mesh.bdr_attributes.Max());
ess_bdr = 1;
hatu_fes->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// shift the ess_tdofs
for (int i = 0; i < ess_tdof_list.Size(); i++)
{
ess_tdof_list[i] += u_fes->GetTrueVSize() + sigma_fes->GetTrueVSize();
}
Array<int> offsets(5);
offsets[0] = 0;
offsets[1] = u_fes->GetVSize();
offsets[2] = sigma_fes->GetVSize();
offsets[3] = hatu_fes->GetVSize();
offsets[4] = hatsigma_fes->GetVSize();
offsets.PartialSum();
BlockVector x(offsets);
x = 0.0;
hatu_gf.MakeRef(hatu_fes,x.GetBlock(2));
hatu_gf.ProjectBdrCoefficient(hatuex,ess_bdr);
OperatorPtr Ah;
Vector X,B;
a->FormLinearSystem(ess_tdof_list,x,Ah,X,B);
BlockMatrix * A = Ah.As<BlockMatrix>();
BlockDiagonalPreconditioner * M = new BlockDiagonalPreconditioner(A->RowOffsets());
M->owns_blocks = 1;
for (int i=0; i<A->NumRowBlocks(); i++)
{
M->SetDiagonalBlock(i,new GSSmoother(A->GetBlock(i,i)));
}
CGSolver cg;
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(3);
cg.SetPreconditioner(*M);
cg.SetOperator(*A);
cg.Mult(B, X);
delete M;
a->RecoverFEMSolution(X,x);
Vector & residuals = a->ComputeResidual(x);
double residual = residuals.Norml2();
cout << "Residual = " << residual << endl;
elements_to_refine.SetSize(0);
double max_resid = residuals.Max();
double theta = 0.7;
for (int iel = 0; iel<mesh.GetNE(); iel++)
{
if (residuals[iel] > theta * max_resid)
{
elements_to_refine.Append(iel);
}
}
GridFunction u_gf;
u_gf.MakeRef(u_fes,x.GetBlock(0));
GridFunction sigma_gf;
sigma_gf.MakeRef(sigma_fes,x.GetBlock(1));
if (visualization)
{
u_out.precision(8);
string keys = (iref == 0) ? "keys em\n" : "keys";
u_out << "solution\n" << mesh << u_gf
<< "window_title 'Numerical u' "
<< flush;
// sigma_out.precision(8);
// sigma_out << "solution\n" << mesh << sigma_gf <<
// "window_title 'Numerical flux' "
// << flush;
mesh_out.precision(8);
mesh_out << "mesh\n" << mesh
<< keys
<< "window_title 'Mesh' "
<< flush;
}
mesh.GeneralRefinement(elements_to_refine);
for (int i =0; i<trial_fes.Size(); i++)
{
trial_fes[i]->Update(false);
}
a->Update();
}
delete a;
delete tau_fec;
delete v_fec;
delete hatsigma_fes;
delete hatsigma_fec;
delete hatu_fes;
delete hatu_fec;
delete sigma_fec;
delete sigma_fes;
delete u_fec;
delete u_fes;
return 0;
}
void solution(const Vector & X, double & u, Vector & du, double & d2u)
{
double x = X[0];
double y = X[1];
double z = 0.;
if (X.Size() == 3) z = X[2];
du.SetSize(X.Size());
du = 0.;
d2u = 0.;
switch(prob)
{
case lshape:
{
double r = sqrt(x*x + y*y);
double alpha = 2./3.;
double theta = atan2(y,x);
if (theta < 0) theta += 2*M_PI;
u = pow(r,alpha) * sin(alpha * theta);
}
break;
default:
{
double alpha = M_PI * (x + y + z);
u = sin(alpha);
du.SetSize(X.Size());
for (int i = 0; i<du.Size(); i++)
{
du[i] = M_PI * cos(alpha);
}
d2u = - M_PI*M_PI * u * du.Size();
}
break;
}
}
+404
View File
@@ -0,0 +1,404 @@
// MFEM UW DPG parallel example
//
// Compile with: make poisson_fosls
//
// - Δ u = f, in Ω
// u = 0, on ∂Ω
// First Order System
// ∇ u - σ = 0, in Ω
// - ∇⋅σ = f, in Ω
// u = 0, in ∂Ω
// UW-DPG:
//
// u ∈ L^2(Ω), σ ∈ (L^2(Ω))^dim
// û ∈ H^1/2, σ̂ ∈ H^-1/2
// -(u , ∇⋅τ) + < û, τ⋅n> - (σ , τ) = 0, ∀ τ ∈ H(div,Ω)
// (σ , ∇ v) - < σ̂, v > = (f,v) ∀ v ∈ H^1(Ω)
// û = 0 on ∂Ω
// -------------------------------------------------------------
// | | u | σ | û | σ̂ | RHS |
// -------------------------------------------------------------
// | τ | -(u,∇⋅τ) | -(σ,τ) | < û, τ⋅n> | | 0 |
// | | | | | | |
// | v | | (σ,∇ v) | | -<σ̂,v> | (f,v) |
// where (τ,v) ∈ H(div,Ω) × H^1(Ω)
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
enum prob_type
{
lshape,
general
};
prob_type prob;
double exact(const Vector & X)
{
double x = X[0];
double y = X[1];
double r = sqrt(x*x + y*y);
double alpha = 2./3.;
double theta = atan2(y,x);
if (theta < 0) theta += 2*M_PI;
return pow(r,alpha) * sin(alpha * theta);
}
void gradexact(const Vector & X, Vector & grad)
{
grad.SetSize(2);
double x = X[0];
double y = X[1];
double r = sqrt(x*x + y*y);
double alpha = 2./3.;
double theta = atan2(y,x);
if (theta < 0) theta += 2*M_PI;
double r_x = x/r;
double r_y = y/r;
double theta_x = - y / (r*r);
double theta_y = x / (r*r);
double beta = alpha * pow(r,alpha - 1.);
grad[0] = beta*(r_x * sin(alpha*theta) + r * theta_x * cos(alpha*theta));
grad[1] = beta*(r_y * sin(alpha*theta) + r * theta_y * cos(alpha*theta));
}
int main(int argc, char *argv[])
{
MPI_Session mpi;
int num_procs = mpi.WorldSize();
int myid = mpi.WorldRank();
// 1. Parse command-line options.
const char *mesh_file = "../../../data/inline-quad.mesh";
int order = 1;
int delta_order = 1;
int ref = 1;
bool adjoint_graph_norm = false;
bool visualization = true;
int iprob = 0;
bool static_cond = false;
double theta = 0.7;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree).");
args.AddOption(&delta_order, "-do", "--delta_order",
"Order enrichment for DPG test space.");
args.AddOption(&ref, "-ref", "--num_refinements",
"Number of uniform refinements");
args.AddOption(&theta, "-theta", "--theta_factor",
"Refinement factor");
args.AddOption(&adjoint_graph_norm, "-graph-norm", "--adjoint-graph-norm",
"-no-graph-norm", "--no-adjoint-graph-norm",
"Enable or disable Adjoint Graph Norm on the test space");
args.AddOption(&iprob, "-prob", "--problem", "Problem case"
" 0: lshape, 1: General");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.Parse();
if (!args.Good())
{
if (myid == 0)
{
args.PrintUsage(cout);
}
return 1;
}
if (myid == 0)
{
args.PrintOptions(cout);
}
if (iprob > 1) { iprob = 1; }
prob = (prob_type)iprob;
if (prob == prob_type::lshape)
{
mesh_file = "../lshape2.mesh";
}
Mesh mesh(mesh_file, 1, 1);
int dim = mesh.Dimension();
mesh.UniformRefinement();
mesh.EnsureNCMesh();
ParMesh pmesh(MPI_COMM_WORLD, mesh);
mesh.Clear();
// Define spaces
// L2 space for u
FiniteElementCollection *u_fec = new L2_FECollection(order-1,dim);
ParFiniteElementSpace *u_fes = new ParFiniteElementSpace(&pmesh,u_fec);
// Vector L2 space for σ
FiniteElementCollection *sigma_fec = new L2_FECollection(order-1,dim);
ParFiniteElementSpace *sigma_fes = new ParFiniteElementSpace(&pmesh,sigma_fec, dim);
// H^1/2 space for û
FiniteElementCollection * hatu_fec = new H1_Trace_FECollection(order,dim);
ParFiniteElementSpace *hatu_fes = new ParFiniteElementSpace(&pmesh,hatu_fec);
// H^-1/2 space for σ̂
FiniteElementCollection * hatsigma_fec = new RT_Trace_FECollection(order-1,dim);
ParFiniteElementSpace *hatsigma_fes = new ParFiniteElementSpace(&pmesh,hatsigma_fec);
// testspace fe collections
int test_order = order+delta_order;
FiniteElementCollection * tau_fec = new RT_FECollection(test_order-1, dim);
FiniteElementCollection * v_fec = new H1_FECollection(test_order, dim);
// Coefficients
ConstantCoefficient one(1.0);
ConstantCoefficient negone(-1.0);
// Normal equation weak formulation
Array<ParFiniteElementSpace * > trial_fes;
Array<FiniteElementCollection * > test_fec;
trial_fes.Append(u_fes);
trial_fes.Append(sigma_fes);
trial_fes.Append(hatu_fes);
trial_fes.Append(hatsigma_fes);
test_fec.Append(tau_fec);
test_fec.Append(v_fec);
ParNormalEquations * a = new ParNormalEquations(trial_fes,test_fec);
a->StoreMatrices(true);
// -(u,∇⋅τ)
a->AddTrialIntegrator(new MixedScalarWeakGradientIntegrator(one),0,0);
// -(σ,τ)
TransposeIntegrator * mass = new TransposeIntegrator(new VectorFEMassIntegrator(negone));
a->AddTrialIntegrator(mass,1,0);
// (σ,∇ v)
TransposeIntegrator * grad = new TransposeIntegrator(new GradientIntegrator(one));
a->AddTrialIntegrator(grad,1,1);
// <û,τ⋅n>
a->AddTrialIntegrator(new NormalTraceIntegrator,2,0);
// -<σ̂,v> (sign is included in σ̂)
a->AddTrialIntegrator(new TraceIntegrator,3,1);
// test integrators (space-induced norm for H(div) × H1)
// (∇⋅τ,∇⋅δτ)
a->AddTestIntegrator(new DivDivIntegrator(one),0,0);
// (τ,δτ)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),0,0);
// (∇v,∇δv)
a->AddTestIntegrator(new DiffusionIntegrator(one),1,1);
// (v,δv)
a->AddTestIntegrator(new MassIntegrator(one),1,1);
// additional terms for adjoint graph norm
if (adjoint_graph_norm)
{
// -(∇v,δτ)
a->AddTestIntegrator(new MixedVectorGradientIntegrator(negone),1,0);
// -(τ,∇δv)
a->AddTestIntegrator(new MixedVectorWeakDivergenceIntegrator(one),0,1);
// (τ,δτ)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),0,0);
}
// RHS
if (prob == prob_type::general)
{
a->AddDomainLFIntegrator(new DomainLFIntegrator(one),1);
}
FunctionCoefficient uex(exact);
Array<int> elements_to_refine;
ParGridFunction hatu_gf;
socketstream u_out;
socketstream sigma_out;
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
u_out.open(vishost, visport);
sigma_out.open(vishost, visport);
}
for (int i = 0; i<ref; i++)
{
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
Array<int> ess_tdof_list;
Array<int> ess_bdr;
if (pmesh.bdr_attributes.Size())
{
ess_bdr.SetSize(pmesh.bdr_attributes.Max());
ess_bdr = 1;
hatu_fes->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// shift the ess_tdofs
for (int i = 0; i < ess_tdof_list.Size(); i++)
{
ess_tdof_list[i] += u_fes->GetTrueVSize() + sigma_fes->GetTrueVSize();
}
Array<int> offsets(5);
offsets[0] = 0;
offsets[1] = u_fes->GetVSize();
offsets[2] = sigma_fes->GetVSize();
offsets[3] = hatu_fes->GetVSize();
offsets[4] = hatsigma_fes->GetVSize();
offsets.PartialSum();
BlockVector x(offsets);
x = 0.0;
if (prob == prob_type::lshape)
{
hatu_gf.MakeRef(hatu_fes,x.GetBlock(2));
hatu_gf.ProjectBdrCoefficient(uex,ess_bdr);
}
Vector X,B;
OperatorPtr Ah;
a->FormLinearSystem(ess_tdof_list,x,Ah,X,B);
BlockOperator * A = Ah.As<BlockOperator>();
BlockDiagonalPreconditioner * M = new BlockDiagonalPreconditioner(A->RowOffsets());
M->owns_blocks = 1;
int skip = 0;
if (!static_cond)
{
HypreBoomerAMG * amg0 = new HypreBoomerAMG((HypreParMatrix &)A->GetBlock(0,0));
HypreBoomerAMG * amg1 = new HypreBoomerAMG((HypreParMatrix &)A->GetBlock(1,1));
amg0->SetPrintLevel(0);
amg1->SetPrintLevel(0);
M->SetDiagonalBlock(0,amg0);
M->SetDiagonalBlock(1,amg1);
skip=2;
}
HypreBoomerAMG * amg2 = new HypreBoomerAMG((HypreParMatrix &)A->GetBlock(skip,skip));
amg2->SetPrintLevel(0);
M->SetDiagonalBlock(skip,amg2);
HypreSolver * prec;
if (dim == 2)
{
prec = new HypreAMS((HypreParMatrix &)A->GetBlock(skip+1,skip+1), hatsigma_fes);
}
else
{
prec = new HypreADS((HypreParMatrix &)A->GetBlock(skip+1,skip+1), hatsigma_fes);
}
M->SetDiagonalBlock(skip+1,prec);
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(3);
cg.SetPreconditioner(*M);
cg.SetOperator(*A);
cg.Mult(B, X);
delete M;
a->RecoverFEMSolution(X,x);
Vector & residuals = a->ComputeResidual(x);
double residual = residuals.Norml2();
double maxresidual = residuals.Max();
double globalresidual = residual * residual;
MPI_Allreduce(MPI_IN_PLACE,&maxresidual,1,MPI_DOUBLE,MPI_MAX,MPI_COMM_WORLD);
MPI_Allreduce(MPI_IN_PLACE,&globalresidual,1,MPI_DOUBLE,MPI_SUM,MPI_COMM_WORLD);
globalresidual = sqrt(globalresidual);
if (myid == 0)
{
cout << "Global Residual = " << globalresidual << endl;
}
elements_to_refine.SetSize(0);
for (int iel = 0; iel<pmesh.GetNE(); iel++)
{
if (residuals[iel] > theta * maxresidual)
{
elements_to_refine.Append(iel);
}
}
ParGridFunction u_gf;
u_gf.MakeRef(u_fes,x.GetBlock(0));
ParGridFunction sigma_gf;
sigma_gf.MakeRef(sigma_fes,x.GetBlock(1));
if (visualization)
{
u_out << "parallel " << num_procs << " " << myid << "\n";
u_out.precision(8);
u_out << "solution\n" << pmesh << u_gf <<
"window_title 'Numerical u' "
<< flush;
sigma_out << "parallel " << num_procs << " " << myid << "\n";
sigma_out.precision(8);
sigma_out << "solution\n" << pmesh << sigma_gf <<
"window_title 'Numerical flux' "
<< flush;
}
if (i == ref-1)
{
break;
}
pmesh.GeneralRefinement(elements_to_refine);
for (int i =0; i<trial_fes.Size(); i++)
{
trial_fes[i]->Update(false);
}
a->Update();
}
delete a;
delete tau_fec;
delete v_fec;
delete hatsigma_fes;
delete hatsigma_fec;
delete hatu_fes;
delete hatu_fec;
delete sigma_fec;
delete sigma_fes;
delete u_fec;
delete u_fes;
return 0;
}
+59
View File
@@ -0,0 +1,59 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Use the MFEM build directory
MFEM_DIR ?= ../../..
MFEM_BUILD_DIR ?= ../../..
SRC = $(if $(MFEM_DIR:../../..=),$(MFEM_DIR)/examples/dpg_tests/grad-div,)
CONFIG_MK = $(MFEM_BUILD_DIR)/config/config.mk
MFEM_LIB_FILE = mfem_is_not_built
-include $(CONFIG_MK)
SEQ_EXAMPLES = primal_dpg
PAR_EXAMPLES =
ifeq ($(MFEM_USE_MPI),NO)
EXAMPLES = $(SEQ_EXAMPLES)
else
EXAMPLES = $(PAR_EXAMPLES) $(SEQ_EXAMPLES)
endif
.SUFFIXES:
.SUFFIXES: .o .cpp .mk
.PHONY: all clean clean-build clean-exec
# Remove built-in rule
%: %.cpp
# Replace the default implicit rule for *.cpp files
%: $(SRC)%.cpp $(MFEM_LIB_FILE) $(CONFIG_MK)
$(MFEM_CXX) $(MFEM_FLAGS) $< -o $@ $(MFEM_LIBS)
all: $(EXAMPLES)
MFEM_TESTS = EXAMPLES
include $(MFEM_TEST_MK)
# Testing: Parallel vs. serial runs
RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
%-test-par: %
@$(call mfem-test,$<, $(RUN_MPI), Parallel example)
%-test-seq: %
@$(call mfem-test,$<,, Serial example)
clean: clean-build clean-exec
clean-build:
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
rm -rf *.dSYM *.TVD.*breakpoints
clean-exec:
+176
View File
@@ -0,0 +1,176 @@
// MFEM primal dpg example for grad-dic problem
//
// Compile with: make primal_dpg
//
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
// Exact solution, F, and r.h.s., f. See below for implementation.
void F_exact(const Vector &, Vector &);
void f_exact(const Vector &, Vector &);
double freq = 1.0, kappa;
int main(int argc, char *argv[])
{
// 1. Parse command line options
const char *mesh_file = "../../../data/star.mesh";
int order = 1;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh", "Mesh file to use.");
args.AddOption(&order, "-o", "--order", "Finite element polynomial degree");
args.ParseCheck();
kappa = freq * M_PI;
// 2. Read the mesh from the given mesh file, and refine once uniformly.
Mesh mesh(mesh_file);
// mesh.UniformRefinement();
RT_FECollection fec(order-1, mesh.Dimension());
FiniteElementSpace RTfes(&mesh, &fec);
H1_Trace_FECollection trace_fec(order, mesh.Dimension());
FiniteElementSpace H1trace_fes(&mesh, &trace_fec);
int dim = mesh.Dimension();
int test_order = order;
if (dim == 2 && (order%2 == 0 || (mesh.MeshGenerator() & 2 && order > 1)))
{
test_order++;
}
test_order++;
RT_FECollection test_fec(test_order,mesh.Dimension());
Array<FiniteElementSpace *> trial_fes;
Array<FiniteElementCollection * > test_fecs;
trial_fes.Append(&RTfes);
trial_fes.Append(&H1trace_fes);
test_fecs.Append(&test_fec);
GridFunction rt_gf(&RTfes);
VectorFunctionCoefficient F(dim, F_exact);
rt_gf.ProjectCoefficient(F);
Vector x(RTfes.GetVSize()+H1trace_fes.GetVSize());
x = 0.;
x.SetVector(rt_gf,0);
ConstantCoefficient alpha(1.0);
ConstantCoefficient beta(1.0);
NormalEquations * a = new NormalEquations(trial_fes,test_fecs);
a->AddTrialIntegrator(new DivDivIntegrator(alpha),0,0);
a->AddTrialIntegrator(new VectorFEMassIntegrator(beta),0,0);
a->AddTrialIntegrator(new NormalTraceIntegrator,1,0);
a->AddTestIntegrator(new DivDivIntegrator(alpha),0,0);
a->AddTestIntegrator(new VectorFEMassIntegrator(beta),0,0);
VectorFunctionCoefficient f(dim, f_exact);
a->AddDomainLFIntegrator(new VectorFEDomainLFIntegrator(f),0);
a->Assemble();
Array<int> ess_tdof_list;
if (mesh.bdr_attributes.Size())
{
Array<int> ess_bdr(mesh.bdr_attributes.Max());
ess_bdr = 1;
RTfes.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
Vector X,B;
OperatorPtr Ah;
a->FormLinearSystem(ess_tdof_list,x,Ah,X,B);
BlockMatrix * A = (BlockMatrix *)(Ah.Ptr());
BlockDiagonalPreconditioner * M = new BlockDiagonalPreconditioner(A->RowOffsets());
M->owns_blocks = 1;
for (int i=0; i<A->NumRowBlocks(); i++)
{
M->SetDiagonalBlock(i,new UMFPackSolver(A->GetBlock(i,i)));
}
CGSolver cg;
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(3);
cg.SetPreconditioner(*M);
cg.SetOperator(*A);
cg.Mult(B, X);
delete M;
a->RecoverFEMSolution(X,x);
// GridFunction u_gf;
double *data = x.GetData();
rt_gf.MakeRef(&RTfes,data);
GridFunction exact_gf(&RTfes);
exact_gf.ProjectCoefficient(F);
char vishost[] = "localhost";
int visport = 19916;
socketstream solu_sock(vishost, visport);
solu_sock.precision(8);
solu_sock << "solution\n" << mesh << rt_gf <<
"window_title 'Numerical u' "
<< flush;
socketstream soltrace_sock(vishost, visport);
soltrace_sock.precision(8);
soltrace_sock << "solution\n" << mesh << exact_gf <<
"window_title 'Exact' "
<< flush;
}
// The exact solution (for non-surface meshes)
void F_exact(const Vector &p, Vector &F)
{
int dim = p.Size();
double x = p(0);
double y = p(1);
// double z = (dim == 3) ? p(2) : 0.0; // Uncomment if F is changed to depend on z
F(0) = cos(kappa*x)*sin(kappa*y);
F(1) = cos(kappa*y)*sin(kappa*x);
if (dim == 3)
{
F(2) = 0.0;
}
}
// The right hand side
void f_exact(const Vector &p, Vector &f)
{
int dim = p.Size();
double x = p(0);
double y = p(1);
// double z = (dim == 3) ? p(2) : 0.0; // Uncomment if f is changed to depend on z
double temp = 1 + 2*kappa*kappa;
f(0) = temp*cos(kappa*x)*sin(kappa*y);
f(1) = temp*cos(kappa*y)*sin(kappa*x);
if (dim == 3)
{
f(2) = 0;
}
}
+51
View File
@@ -0,0 +1,51 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see mesh/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
#
dimension
2
elements
3
1 3 0 1 4 3
1 3 3 4 7 6
1 3 1 2 5 4
boundary
8
1 1 0 1
1 1 1 2
1 1 2 5
2 1 5 4
2 1 4 7
1 1 7 6
1 1 6 3
1 1 3 0
vertices
8
nodes
FiniteElementSpace
FiniteElementCollection: H1_2D_P1
VDim: 2
Ordering: 1
-1 1
-1 -0
-1 -1
0 1
0 -0
0 -1
1 1
1 -0
@@ -0,0 +1,907 @@
// MFEM Ultraweak DPG Maxwell example
//
// Compile with: make complex_uw_dpg
//
// ∇×(1/μ ∇×E) - ω^2 ϵ E = Ĵ , in Ω
// E×n = E_0, on ∂Ω
// First Order System
// i ω μ H + ∇ × E = 0, in Ω
// -i ω ϵ E + ∇ × H = J, in Ω
// E × n = E_0, on ∂Ω
// note: Ĵ = -iωJ
// in 2D
// E is vector valued and H is scalar.
// (∇ × E, F) = (E, ∇ × F) + < n × E , F>
// or (∇ ⋅ AE , F) = (AE, ∇ F) + < AE ⋅ n, F>
// where A = A = [0 1; -1 0];
// UW-DPG:
//
// in 3D
// E,H ∈ (L^2(Ω))^3
// Ê ∈ H_0^1/2(Ω)(curl, Γ_h), Ĥ ∈ H^-1/2(curl, Γ_h)
// i ω μ (H,F) + (E,∇ × F) + < Ê, F × n > = 0, ∀ F ∈ H(curl,Ω)
// -i ω ϵ (E,G) + (H,∇ × G) + < Ĥ, G × n > = (J,G) ∀ G ∈ H(curl,Ω)
// Ê × n = E_0 on ∂Ω
// -------------------------------------------------------------------------
// | | E | H | Ê | Ĥ | RHS |
// -------------------------------------------------------------------------
// | F | (E,∇ × F) | i ω μ (H,F) | < n × Ê, F > | | |
// | | | | | | |
// | G | -i ω ϵ (E,G) | (H,∇ × G) | | < n × Ĥ, G > | (J,G) |
// where (F,G) ∈ H(curl,Ω) × H(curl,Ω)
// in 2D
// E ∈ L^2(Ω)^2, H ∈ L^2(Ω)
// Ê ∈ H^-1/2(Ω)(Γ_h), Ĥ ∈ H^1/2(Γ_h)
// i ω μ (H,F) + (E, ∇ × F) + < AÊ, F > = 0, ∀ F ∈ H^1
// -i ω ϵ (E,G) + (H,∇ × G) + < Ĥ, G × n > = (J,G) ∀ G ∈ H(curl,Ω)
// Ê = E_0 on ∂Ω
// -------------------------------------------------------------------------
// | | E | H | Ê | Ĥ | RHS |
// -------------------------------------------------------------------------
// | F | (E,∇ × F) | i ω μ (H,F) | < Ê, F > | | |
// | | | | | | |
// | G | -i ω ϵ (E,G) | (H,∇ × G) | | < Ĥ, G × n > | (J,G) |
// where (F,G) ∈ H^1 × H(curl,Ω)
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
void E_exact_r(const Vector &x, Vector & E_r);
void E_exact_i(const Vector &x, Vector & E_i);
void H_exact_r(const Vector &x, Vector & H_r);
void H_exact_i(const Vector &x, Vector & H_i);
void rhs_func_r(const Vector &x, Vector & J_r);
void rhs_func_i(const Vector &x, Vector & J_i);
void curlE_exact_r(const Vector &x, Vector &curlE_r);
void curlE_exact_i(const Vector &x, Vector &curlE_i);
void curlH_exact_r(const Vector &x,Vector &curlH_r);
void curlH_exact_i(const Vector &x,Vector &curlH_i);
void curlcurlE_exact_r(const Vector &x, Vector & curlcurlE_r);
void curlcurlE_exact_i(const Vector &x, Vector & curlcurlE_i);
void hatE_exact_r(const Vector & X, Vector & hatE_r);
void hatE_exact_i(const Vector & X, Vector & hatE_i);
void hatH_exact_r(const Vector & X, Vector & hatH_r);
void hatH_exact_i(const Vector & X, Vector & hatH_i);
double hatH_exact_scalar_r(const Vector & X);
double hatH_exact_scalar_i(const Vector & X);
void maxwell_solution(const Vector & X,
std::vector<complex<double>> &E,
std::vector<complex<double>> &curlE,
std::vector<complex<double>> &curlcurlE);
void maxwell_solution_r(const Vector & X, Vector &E_r,
Vector &curlE_r,
Vector &curlcurlE_r);
void maxwell_solution_i(const Vector & X, Vector &E_i,
Vector &curlE_i,
Vector &curlcurlE_i);
int dim;
int dimc;
double omega;
double mu = 1.0;
double epsilon = 1.0;
enum prob_type
{
polynomial,
plane_wave,
fichera_oven
};
prob_type prob;
int main(int argc, char *argv[])
{
const char *mesh_file = "../../../data/inline-hex.mesh";
int order = 1;
int delta_order = 1;
bool visualization = true;
double rnum=1.0;
int ref = 1;
double theta = 0.0;
bool adjoint_graph_norm = false;
bool static_cond = false;
int iprob = 0;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree)");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&rnum, "-rnum", "--number_of_wavelenths",
"Number of wavelengths");
args.AddOption(&mu, "-mu", "--permeability",
"Permeability of free space (or 1/(spring constant)).");
args.AddOption(&epsilon, "-eps", "--permittivity",
"Permittivity of free space (or mass constant).");
args.AddOption(&iprob, "-prob", "--problem", "Problem case"
" 0: polynomial, 1: plane wave, 2: Gaussian beam");
args.AddOption(&delta_order, "-do", "--delta_order",
"Order enrichment for DPG test space.");
args.AddOption(&theta, "-theta", "--theta",
"Theta parameter for AMR");
args.AddOption(&adjoint_graph_norm, "-graph-norm", "--adjoint-graph-norm",
"-no-graph-norm", "--no-adjoint-graph-norm",
"Enable or disable Adjoint Graph Norm on the test space");
args.AddOption(&ref, "-ref", "--serial_ref",
"Number of serial refinements.");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
if (iprob > 2) { iprob = 0; }
prob = (prob_type)iprob;
omega = 2.*M_PI*rnum;
Mesh mesh(mesh_file, 1, 1);
dim = mesh.Dimension();
dimc = (dim == 3) ? 3 : 1;
int test_order = order+delta_order;
// Define spaces
// L2 space for E
FiniteElementCollection *E_fec = new L2_FECollection(order-1,dim);
FiniteElementSpace *E_fes = new FiniteElementSpace(&mesh,E_fec,dim);
// Vector L2 space for H
FiniteElementCollection *H_fec = new L2_FECollection(order-1,dim);
FiniteElementSpace *H_fes = new FiniteElementSpace(&mesh,H_fec, dimc);
// H^-1/2 (curl) space for Ê
FiniteElementCollection * hatE_fec = nullptr;
FiniteElementCollection * hatH_fec = nullptr;
FiniteElementCollection * F_fec = nullptr;
if (dim == 3)
{
hatE_fec = new ND_Trace_FECollection(order,dim);
hatH_fec = new ND_Trace_FECollection(order,dim);
F_fec = new ND_FECollection(test_order, dim);
}
else
{
hatE_fec = new RT_Trace_FECollection(order-1,dim);
hatH_fec = new H1_Trace_FECollection(order,dim);
F_fec = new H1_FECollection(test_order, dim);
}
FiniteElementSpace *hatE_fes = new FiniteElementSpace(&mesh,hatE_fec);
FiniteElementSpace *hatH_fes = new FiniteElementSpace(&mesh,hatH_fec);
FiniteElementCollection * G_fec = new ND_FECollection(test_order, dim);
mfem::out << "E_fes space true dofs = " << E_fes->GetTrueVSize() << endl;
mfem::out << "H_fes space true dofs = " << H_fes->GetTrueVSize() << endl;
mfem::out << "hatE_fes space true dofs = " << hatE_fes->GetTrueVSize() << endl;
mfem::out << "hatH_fes space true dofs = " << hatH_fes->GetTrueVSize() << endl;
// // Coefficients
Vector dim_zero(dim); dim_zero = 0.0;
Vector dimc_zero(dimc); dimc_zero = 0.0;
VectorConstantCoefficient E_zero(dim_zero);
VectorConstantCoefficient H_zero(dimc_zero);
ConstantCoefficient one(1.0);
ConstantCoefficient eps2omeg2(epsilon*epsilon*omega*omega);
ConstantCoefficient mu2omeg2(mu*mu*omega*omega);
ConstantCoefficient muomeg(mu*omega);
ConstantCoefficient negepsomeg(-epsilon*omega);
ConstantCoefficient epsomeg(epsilon*omega);
ConstantCoefficient negmuomeg(-mu*omega);
DenseMatrix rot_mat(2);
rot_mat(0,0) = 0.; rot_mat(0,1) = 1.;
rot_mat(1,0) = -1.; rot_mat(1,1) = 0.;
MatrixConstantCoefficient rot(rot_mat);
ScalarMatrixProductCoefficient epsrot(epsomeg,rot);
ScalarMatrixProductCoefficient negepsrot(negepsomeg,rot);
// Normal equation weak formulation
Array<FiniteElementSpace * > trial_fes;
Array<FiniteElementCollection * > test_fec;
trial_fes.Append(E_fes);
trial_fes.Append(H_fes);
trial_fes.Append(hatE_fes);
trial_fes.Append(hatH_fes);
test_fec.Append(F_fec);
test_fec.Append(G_fec);
ComplexNormalEquations * a = new ComplexNormalEquations(trial_fes,test_fec);
a->StoreMatrices();
// (E,∇ × F)
a->AddTrialIntegrator(new TransposeIntegrator(new CurlIntegrator(one)),nullptr,0,0);
// -i ω ϵ (E , G)
a->AddTrialIntegrator(nullptr,new TransposeIntegrator(new VectorFEMassIntegrator(negepsomeg)),0,1);
// i ω μ (H, F)
if (dim == 3)
{
a->AddTrialIntegrator(nullptr,new TransposeIntegrator(new VectorFEMassIntegrator(muomeg)),1,0);
}
else
{
a->AddTrialIntegrator(nullptr,new MixedScalarMassIntegrator(muomeg),1,0);
}
// (H,∇ × G)
a->AddTrialIntegrator(new TransposeIntegrator(new CurlIntegrator(one)),nullptr,1,1);
// < n×Ê,F>
if (dim == 3)
{
a->AddTrialIntegrator(new TangentTraceIntegrator,nullptr,2,0);
}
else
{
a->AddTrialIntegrator(new TraceIntegrator,nullptr,2,0);
}
// < n×Ĥ ,G>
a->AddTrialIntegrator(new TangentTraceIntegrator,nullptr,3,1);
// test integrators
//space-induced norm for H(curl) × H(curl)
if (dim == 3)
{
// (∇×F,∇×δF)
a->AddTestIntegrator(new CurlCurlIntegrator(one),nullptr,0,0);
// (F,δF)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),nullptr,0,0);
}
else
{
// (∇F,∇δF)
a->AddTestIntegrator(new DiffusionIntegrator(one),nullptr,0,0);
// (F,δF)
a->AddTestIntegrator(new MassIntegrator(one),nullptr,0,0);
}
// (∇×G ,∇× δG)
a->AddTestIntegrator(new CurlCurlIntegrator(one),nullptr,1,1);
// (G,δG)
a->AddTestIntegrator(new VectorFEMassIntegrator(one),nullptr,1,1);
// additional integrators for the adjoint graph norm
if (adjoint_graph_norm)
{
if(dim == 3)
{
// μ^2 ω^2 (F,δF)
a->AddTestIntegrator(new VectorFEMassIntegrator(mu2omeg2),nullptr,0,0);
// -i ω μ (F,∇ × δG) = (F, ω μ ∇ × δ G)
a->AddTestIntegrator(nullptr,new MixedVectorWeakCurlIntegrator(negmuomeg),0,1);
// -i ω ϵ (∇ × F, δG)
a->AddTestIntegrator(nullptr,new MixedVectorCurlIntegrator(negepsomeg),0,1);
// i ω μ (∇ × G,δF)
a->AddTestIntegrator(nullptr,new MixedVectorCurlIntegrator(epsomeg),1,0);
// i ω ϵ (G, ∇ × δF )
a->AddTestIntegrator(nullptr,new MixedVectorWeakCurlIntegrator(muomeg),1,0);
// ϵ^2 ω^2 (G,δG)
a->AddTestIntegrator(new VectorFEMassIntegrator(eps2omeg2),nullptr,1,1);
}
else
{
// μ^2 ω^2 (F,δF)
a->AddTestIntegrator(new MassIntegrator(mu2omeg2),nullptr,0,0);
// -i ω μ (F,∇ × δG) = i (F, -ω μ ∇ × δ G)
a->AddTestIntegrator(nullptr,
new TransposeIntegrator(new CurlIntegrator(negmuomeg)),0,1);
// -i ω ϵ (∇ × F, δG) = i (- ω ϵ A ∇ F,δG), A = [0 1; -1; 0]
a->AddTestIntegrator(nullptr,new MixedVectorGradientIntegrator(negepsrot),0,1);
// i ω μ (∇ × G,δF) = i (ω μ ∇ × G, δF )
a->AddTestIntegrator(nullptr,new CurlIntegrator(muomeg),1,0);
// i ω ϵ (G, ∇ × δF ) = i (ω ϵ G, A ∇ δF) = i ( G , ω ϵ A ∇ δF)
a->AddTestIntegrator(nullptr,
new TransposeIntegrator(new MixedVectorGradientIntegrator(epsrot)),1,0);
// or i ( ω ϵ A^t G, ∇ δF) = i (- ω ϵ A G, ∇ δF)
// a->AddTestIntegrator(nullptr,
// new MixedVectorWeakDivergenceIntegrator(epsrot),1,0);
// ϵ^2 ω^2 (G,δG)
a->AddTestIntegrator(new VectorFEMassIntegrator(eps2omeg2),nullptr,1,1);
}
}
// RHS
VectorFunctionCoefficient f_rhs_r(dim,rhs_func_r);
VectorFunctionCoefficient f_rhs_i(dim,rhs_func_i);
a->AddDomainLFIntegrator(new VectorFEDomainLFIntegrator(f_rhs_r),
new VectorFEDomainLFIntegrator(f_rhs_i),1);
VectorFunctionCoefficient hatEex_r(dim,hatE_exact_r);
VectorFunctionCoefficient hatEex_i(dim,hatE_exact_i);
VectorFunctionCoefficient hatHex_r(dimc,hatH_exact_r);
VectorFunctionCoefficient hatHex_i(dimc,hatH_exact_i);
FunctionCoefficient hatH_2D_ex_r(hatH_exact_scalar_r);
FunctionCoefficient hatH_2D_ex_i(hatH_exact_scalar_i);
Array<int> elements_to_refine;
socketstream E_out_r;
socketstream Eex_out_r;
// socketstream E_out_i;
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
E_out_r.open(vishost, visport);
Eex_out_r.open(vishost, visport);
// E_out_i.open(vishost, visport);
}
double res0 = 0.;
double err0 = 0.;
int dof0;
mfem::out << " Refinement |"
<< " Dofs |"
<< " L2 Error |"
<< " Relative % |"
<< " Rate |"
<< " Residual |"
<< " Rate |" << endl;
mfem::out << " --------------------"
<< "-------------------"
<< "-------------------"
<< "-------------------" << endl;
for (int i = 0; i<ref; i++)
{
if (static_cond) { a->EnableStaticCondensation(); }
a->Assemble();
Array<int> ess_tdof_list;
Array<int> ess_bdr;
if (mesh.bdr_attributes.Size())
{
ess_bdr.SetSize(mesh.bdr_attributes.Max());
ess_bdr = 1;
hatE_fes->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
// hatH_fes->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// shift the ess_tdofs
for (int j = 0; j < ess_tdof_list.Size(); j++)
{
ess_tdof_list[j] += E_fes->GetTrueVSize() + H_fes->GetTrueVSize();
// + hatE_fes->GetTrueVSize();
}
Array<int> offsets(5);
offsets[0] = 0;
offsets[1] = E_fes->GetVSize();
offsets[2] = H_fes->GetVSize();
offsets[3] = hatE_fes->GetVSize();
offsets[4] = hatH_fes->GetVSize();
offsets.PartialSum();
Vector x(2*offsets.Last());
x = 0.;
double * xdata = x.GetData();
ComplexGridFunction hatE_gf(hatE_fes);
hatE_gf.real().MakeRef(hatE_fes,&xdata[offsets[2]]);
hatE_gf.imag().MakeRef(hatE_fes,&xdata[offsets.Last()+ offsets[2]]);
ComplexGridFunction hatH_gf(hatH_fes);
hatH_gf.real().MakeRef(hatH_fes,&xdata[offsets[3]]);
hatH_gf.imag().MakeRef(hatH_fes,&xdata[offsets.Last()+ offsets[3]]);
if (dim == 3)
{
hatE_gf.ProjectBdrCoefficientTangent(hatEex_r,hatEex_i, ess_bdr);
// hatH_gf.ProjectBdrCoefficientTangent(hatHex_r,hatHex_i, ess_bdr);
}
else
{
hatE_gf.ProjectBdrCoefficientNormal(hatEex_r,hatEex_i, ess_bdr);
// hatH_gf.ProjectBdrCoefficient(hatH_2D_ex_r,hatH_2D_ex_i, ess_bdr);
}
OperatorPtr Ah;
Vector X,B;
a->FormLinearSystem(ess_tdof_list,x,Ah, X,B);
ComplexOperator * Ahc = Ah.As<ComplexOperator>();
SparseMatrix * Ar = dynamic_cast<BlockMatrix *>(&Ahc->real())->CreateMonolithic();
SparseMatrix * Ai = dynamic_cast<BlockMatrix *>(&Ahc->imag())->CreateMonolithic();
ComplexSparseMatrix Ac(Ar,Ai,true,true);
SparseMatrix * A = Ac.GetSystemMatrix();
UMFPackSolver umf(*A);
umf.Mult(B,X);
delete A;
a->RecoverFEMSolution(X,x);
Vector & residuals = a->ComputeResidual(x);
double residual = residuals.Norml2();
elements_to_refine.SetSize(0);
double max_resid = residuals.Max();
for (int iel = 0; iel<mesh.GetNE(); iel++)
{
if (residuals[iel] > theta * max_resid)
{
elements_to_refine.Append(iel);
}
}
ComplexGridFunction E(E_fes);
E.real().MakeRef(E_fes,x.GetData());
E.imag().MakeRef(E_fes,&x.GetData()[offsets.Last()]);
VectorFunctionCoefficient E_ex_r(dim,E_exact_r);
VectorFunctionCoefficient E_ex_i(dim,E_exact_i);
ComplexGridFunction H(H_fes);
H.real().MakeRef(H_fes,&x.GetData()[offsets[1]]);
H.imag().MakeRef(H_fes,&x.GetData()[offsets.Last()+offsets[1]]);
VectorFunctionCoefficient H_ex_r(dimc,H_exact_r);
VectorFunctionCoefficient H_ex_i(dimc,H_exact_i);
int dofs = X.Size()/2;
double E_err_r = E.real().ComputeL2Error(E_ex_r);
double E_err_i = E.imag().ComputeL2Error(E_ex_i);
double H_err_r = H.real().ComputeL2Error(H_ex_r);
double H_err_i = H.imag().ComputeL2Error(H_ex_i);
double L2Error = sqrt( E_err_r*E_err_r + E_err_i*E_err_i
+ H_err_r*H_err_r + H_err_i*H_err_i );
ComplexGridFunction Egf_ex(E_fes);
ComplexGridFunction Hgf_ex(H_fes);
Egf_ex.ProjectCoefficient(E_ex_r, E_ex_i);
Hgf_ex.ProjectCoefficient(H_ex_r, H_ex_i);
double E_norm_r = Egf_ex.real().ComputeL2Error(E_zero);
double E_norm_i = Egf_ex.imag().ComputeL2Error(E_zero);
double H_norm_r = Hgf_ex.real().ComputeL2Error(H_zero);
double H_norm_i = Hgf_ex.imag().ComputeL2Error(H_zero);
double L2norm = sqrt( E_norm_r*E_norm_r + E_norm_i*E_norm_i
+ H_norm_r*H_norm_r + H_norm_i*H_norm_i );
double rel_err = L2Error/L2norm;
double rate_err = (i) ? dim*log(err0/rel_err)/log((double)dof0/dofs) : 0.0;
double rate_res = (i) ? dim*log(res0/residual)/log((double)dof0/dofs) : 0.0;
err0 = rel_err;
res0 = residual;
dof0 = dofs;
mfem::out << std::right << std::setw(11) << i << " | "
<< std::setw(10) << dof0 << " | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << err0 << " | "
<< std::setprecision(3)
<< std::setw(10) << std::fixed << rel_err*100 << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_err << " | "
<< std::setprecision(3)
<< std::setw(10) << std::scientific << res0 << " | "
<< std::setprecision(2)
<< std::setw(6) << std::fixed << rate_res << " | "
<< std::resetiosflags(std::ios::showbase)
<< std::setw(10) << std::scientific
<< std::endl;
if (visualization)
{
E_out_r.precision(8);
E_out_r << "solution\n" << mesh << E.real() <<
"window_title 'Real Numerical Electric field' "
<< flush;
// E_out_i.precision(8);
// E_out_i << "solution\n" << mesh << E.imag() <<
// "window_title 'Imag Numerical Electric field' "
// << flush;
Eex_out_r.precision(8);
Eex_out_r << "solution\n" << mesh << Egf_ex.real()
<< "window_title 'Real Exact Electric field' "
<< flush;
// socketstream E_i_sock(vishost, visport);
// E_i_sock.precision(8);
// E_i_sock << "solution\n" << mesh << Egf_ex.imag()
// << "window_title 'Imag Exact Electric field' "
// << flush;
}
if (i == ref-1)
break;
mesh.GeneralRefinement(elements_to_refine,1,1);
for (int i =0; i<trial_fes.Size(); i++)
{
trial_fes[i]->Update(false);
}
a->Update();
}
delete a;
delete F_fec;
delete G_fec;
delete hatH_fes;
delete hatH_fec;
delete hatE_fes;
delete hatE_fec;
delete H_fec;
delete E_fec;
delete H_fes;
delete E_fes;
return 0;
}
void E_exact_r(const Vector &x, Vector & E_r)
{
Vector curlE_r;
Vector curlcurlE_r;
maxwell_solution_r(x,E_r,curlE_r,curlcurlE_r);
}
void E_exact_i(const Vector &x, Vector & E_i)
{
Vector curlE_i;
Vector curlcurlE_i;
maxwell_solution_i(x,E_i,curlE_i,curlcurlE_i);
}
void curlE_exact_r(const Vector &x, Vector &curlE_r)
{
Vector E_r;
Vector curlcurlE_r;
maxwell_solution_r(x,E_r,curlE_r,curlcurlE_r);
}
void curlE_exact_i(const Vector &x, Vector &curlE_i)
{
Vector E_i;
Vector curlcurlE_i;
maxwell_solution_i(x,E_i,curlE_i,curlcurlE_i);
}
void curlcurlE_exact_r(const Vector &x, Vector & curlcurlE_r)
{
Vector E_r;
Vector curlE_r;
maxwell_solution_r(x,E_r,curlE_r,curlcurlE_r);
}
void curlcurlE_exact_i(const Vector &x, Vector & curlcurlE_i)
{
Vector E_i;
Vector curlE_i;
maxwell_solution_i(x,E_i,curlE_i,curlcurlE_i);
}
void H_exact_r(const Vector &x, Vector & H_r)
{
// H = i ∇ × E / ω μ
// H_r = - ∇ × E_i / ω μ
Vector curlE_i;
curlE_exact_i(x,curlE_i);
H_r.SetSize(dimc);
for (int i = 0; i<dimc; i++)
{
H_r(i) = - curlE_i(i) / (omega * mu);
}
}
void H_exact_i(const Vector &x, Vector & H_i)
{
// H = i ∇ × E / ω μ
// H_i = ∇ × E_r / ω μ
Vector curlE_r;
curlE_exact_r(x,curlE_r);
H_i.SetSize(dimc);
for (int i = 0; i<dimc; i++)
{
H_i(i) = curlE_r(i) / (omega * mu);
}
}
void curlH_exact_r(const Vector &x,Vector &curlH_r)
{
// ∇ × H_r = - ∇ ×× E_i / ω μ
Vector curlcurlE_i;
curlcurlE_exact_i(x,curlcurlE_i);
curlH_r.SetSize(dim);
for (int i = 0; i<dim; i++)
{
curlH_r(i) = -curlcurlE_i(i) / (omega * mu);
}
}
void curlH_exact_i(const Vector &x,Vector &curlH_i)
{
// ∇ × H_i = ∇ ×× E_r / ω μ
Vector curlcurlE_r;
curlcurlE_exact_r(x,curlcurlE_r);
curlH_i.SetSize(dim);
for (int i = 0; i<dim; i++)
{
curlH_i(i) = curlcurlE_r(i) / (omega * mu);
}
}
void hatE_exact_r(const Vector & x, Vector & hatE_r)
{
if (dim == 3)
{
E_exact_r(x,hatE_r);
}
else
{
Vector E_r;
E_exact_r(x,E_r);
hatE_r.SetSize(hatE_r.Size());
// rotate E_hat
hatE_r[0] = E_r[1];
hatE_r[1] = -E_r[0];
}
}
void hatE_exact_i(const Vector & x, Vector & hatE_i)
{
if (dim == 3)
{
E_exact_i(x,hatE_i);
}
else
{
Vector E_i;
E_exact_i(x,E_i);
hatE_i.SetSize(hatE_i.Size());
// rotate E_hat
hatE_i[0] = E_i[1];
hatE_i[1] = -E_i[0];
}
}
void hatH_exact_r(const Vector & x, Vector & hatH_r)
{
H_exact_r(x,hatH_r);
}
void hatH_exact_i(const Vector & x, Vector & hatH_i)
{
H_exact_i(x,hatH_i);
}
double hatH_exact_scalar_r(const Vector & x)
{
Vector hatH_r;
H_exact_r(x,hatH_r);
return hatH_r[0];
}
double hatH_exact_scalar_i(const Vector & x)
{
Vector hatH_i;
H_exact_i(x,hatH_i);
return hatH_i[0];
}
// J = -i ω ϵ E + ∇ × H
// J_r + iJ_i = -i ω ϵ (E_r + i E_i) + ∇ × (H_r + i H_i)
void rhs_func_r(const Vector &x, Vector & J_r)
{
// J_r = ω ϵ E_i + ∇ × H_r
Vector E_i, curlH_r;
E_exact_i(x,E_i);
curlH_exact_r(x,curlH_r);
J_r.SetSize(dim);
for (int i = 0; i<dim; i++)
{
J_r(i) = omega * epsilon * E_i(i) + curlH_r(i);
}
}
void rhs_func_i(const Vector &x, Vector & J_i)
{
// J_i = - ω ϵ E_r + ∇ × H_i
Vector E_r, curlH_i;
E_exact_r(x,E_r);
curlH_exact_i(x,curlH_i);
J_i.SetSize(dim);
for (int i = 0; i<dim; i++)
{
J_i(i) = -omega * epsilon * E_r(i) + curlH_i(i);
}
}
void maxwell_solution(const Vector & X, std::vector<complex<double>> &E,
std::vector<complex<double>> &curlE,
std::vector<complex<double>> &curlcurlE)
{
double x = X(0);
double y = X(1);
double z;
if (dim == 3) z = X(2);
E.resize(dim);
curlE.resize(dimc);
curlcurlE.resize(dim);
switch (prob)
{
case prob_type::polynomial:
{
if (dim == 3)
{
E[0] = y * z * (1.0 - y) * (1.0 - z);
E[1] = x * y * z * (1.0 - x) * (1.0 - z);
E[2] = x * y * (1.0 - x) * (1.0 - y);
curlE[0] = (1.0 - x) * x * (y*(2.0*z-3.0)+1.0);
curlE[1] = 2.0*(1.0 - y)*y*(x-z);
curlE[2] = (z-1)*z*(1.0+y*(2.0*x-3.0));
curlcurlE[0] = 2.0 * y * (1.0 - y) - (2.0 * x - 3.0) * z * (1 - z);
curlcurlE[1] = 2.0 * y * (x * (1.0 - x) + (1.0 - z) * z);
curlcurlE[2] = 2.0 * y * (1.0 - y) + x * (3.0 - 2.0 * z) * (1.0 - x);
}
else
{
E[0] = y * (1.0 - y);
E[1] = x * y * (1.0 - x);
curlE[0] = y*(3.0 - 2*x) - 1.0;
curlcurlE[0] = 3.0 - 2*x;
curlcurlE[1] = 2.0*y;
}
}
break;
case prob_type::plane_wave:
{
std::complex<double> zi(0,1);
std::complex<double> pw = exp(-zi * omega * (X.Sum()));
E[0] = pw;
E[1] = 0.0;
if (dim == 3)
{
E[2] = 0.0;
curlE[0] = 0.0;
curlE[1] = -zi * omega * pw;
curlE[2] = zi * omega * pw;
curlcurlE[0] = 2.0 * omega * omega * pw;
curlcurlE[1] = - omega * omega * pw;
curlcurlE[2] = - omega * omega * pw;
}
else
{
curlE[0] = zi * omega * pw;
curlcurlE[0] = omega * omega * pw;
curlcurlE[1] = - omega * omega * pw ;
}
}
break;
default:
MFEM_ABORT("Fichera 'oven' problem not implemented yet");
break;
}
}
void maxwell_solution_r(const Vector & X, Vector &E_r,
Vector &curlE_r,
Vector &curlcurlE_r)
{
E_r.SetSize(dim);
curlE_r.SetSize(dimc);
curlcurlE_r.SetSize(dim);
std::vector<complex<double>> E;
std::vector<complex<double>> curlE;
std::vector<complex<double>> curlcurlE;
maxwell_solution(X,E,curlE,curlcurlE);
for (int i = 0; i<dim ; i++)
{
E_r(i) = E[i].real();
curlcurlE_r(i) = curlcurlE[i].real();
}
for (int i = 0; i<dimc; i++)
{
curlE_r(i) = curlE[i].real();
}
}
void maxwell_solution_i(const Vector & X, Vector &E_i,
Vector &curlE_i,
Vector &curlcurlE_i)
{
E_i.SetSize(dim);
curlE_i.SetSize(dimc);
curlcurlE_i.SetSize(dim);
std::vector<complex<double>> E;
std::vector<complex<double>> curlE;
std::vector<complex<double>> curlcurlE;
maxwell_solution(X,E,curlE,curlcurlE);
for (int i = 0; i<dim; i++)
{
E_i(i) = E[i].imag();
curlcurlE_i(i) = curlcurlE[i].imag();
}
for (int i = 0; i<dimc; i++)
{
curlE_i(i) = curlE[i].imag();
}
}
File diff suppressed because it is too large Load Diff
+59
View File
@@ -0,0 +1,59 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Use the MFEM build directory
MFEM_DIR ?= ../../..
MFEM_BUILD_DIR ?= ../../..
SRC = $(if $(MFEM_DIR:../../..=),$(MFEM_DIR)/examples/dpg_tests/acoustics,)
CONFIG_MK = $(MFEM_BUILD_DIR)/config/config.mk
MFEM_LIB_FILE = mfem_is_not_built
-include $(CONFIG_MK)
SEQ_EXAMPLES = complex_uw_dpg complex_uw_dpg_2D
PAR_EXAMPLES = pcomplex_uw_dpg
ifeq ($(MFEM_USE_MPI),NO)
EXAMPLES = $(SEQ_EXAMPLES)
else
EXAMPLES = $(PAR_EXAMPLES) $(SEQ_EXAMPLES)
endif
.SUFFIXES:
.SUFFIXES: .o .cpp .mk
.PHONY: all clean clean-build clean-exec
# Remove built-in rule
%: %.cpp
# Replace the default implicit rule for *.cpp files
%: $(SRC)%.cpp $(MFEM_LIB_FILE) $(CONFIG_MK)
$(MFEM_CXX) $(MFEM_FLAGS) $< -o $@ $(MFEM_LIBS)
all: $(EXAMPLES)
MFEM_TESTS = EXAMPLES
include $(MFEM_TEST_MK)
# Testing: Parallel vs. serial runs
RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
%-test-par: %
@$(call mfem-test,$<, $(RUN_MPI), Parallel example)
%-test-seq: %
@$(call mfem-test,$<,, Serial example)
clean: clean-build clean-exec
clean-build:
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
rm -rf *.dSYM *.TVD.*breakpoints
clean-exec:
File diff suppressed because it is too large Load Diff
@@ -0,0 +1,253 @@
// Test integrator
// (∇ × E, F)
#include "mfem.hpp"
#include <fstream>
#include <iostream>
using namespace std;
using namespace mfem;
void E_exact_r(const Vector &x, Vector & E_r);
void curlE_exact_r(const Vector &x, Vector &curlE_r);
void maxwell_solution(const Vector & X,
std::vector<complex<double>> &E,
std::vector<complex<double>> &curlE,
std::vector<complex<double>> &curlcurlE);
void maxwell_solution_r(const Vector & X, Vector &E_r,
Vector &curlE_r,
Vector &curlcurlE_r);
int dim;
int dimc;
double omega;
enum prob_type
{
polynomial,
plane_wave,
fichera_oven
};
prob_type prob;
int main(int argc, char *argv[])
{
const char *mesh_file = "../../../data/inline-hex.mesh";
int order = 1;
int delta_order = 1;
bool visualization = true;
double rnum=1.0;
int ref = 1;
double theta = 0.0;
bool adjoint_graph_norm = false;
bool static_cond = false;
int iprob = 0;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&order, "-o", "--order",
"Finite element order (polynomial degree)");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&rnum, "-rnum", "--number_of_wavelenths",
"Number of wavelengths");
args.AddOption(&iprob, "-prob", "--problem", "Problem case"
" 0: polynomial, 1: plane wave, 2: Gaussian beam");
args.AddOption(&delta_order, "-do", "--delta_order",
"Order enrichment for DPG test space.");
args.AddOption(&theta, "-theta", "--theta",
"Theta parameter for AMR");
args.AddOption(&adjoint_graph_norm, "-graph-norm", "--adjoint-graph-norm",
"-no-graph-norm", "--no-adjoint-graph-norm",
"Enable or disable Adjoint Graph Norm on the test space");
args.AddOption(&ref, "-ref", "--serial_ref",
"Number of serial refinements.");
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
"--no-static-condensation", "Enable static condensation.");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
args.PrintOptions(cout);
if (iprob > 2) { iprob = 0; }
prob = (prob_type)iprob;
omega = 2.*M_PI*rnum;
Mesh mesh(mesh_file, 1, 1);
dim = mesh.Dimension();
dimc = (dim == 3) ? 3 : 1;
// Define spaces
// L2 space for E
FiniteElementCollection *E_fec = new ND_FECollection(order,dim);
FiniteElementSpace *E_fes = new FiniteElementSpace(&mesh,E_fec);
FiniteElementCollection *curlE_fec = new L2_FECollection(order-1,dim);
FiniteElementSpace *curlE_fes = new FiniteElementSpace(&mesh,curlE_fec,dimc);
mfem::out << "E_fes space true dofs = " << E_fes->GetTrueVSize() << endl;
mfem::out << "curlE_fes space true dofs = " << curlE_fes->GetTrueVSize() << endl;
GridFunction E_gf(E_fes);
VectorFunctionCoefficient E_cf(dim,E_exact_r);
E_gf.ProjectCoefficient(E_cf);
GridFunction curlE_gf(curlE_fes);
VectorFunctionCoefficient curlE_cf(dimc,curlE_exact_r);
curlE_gf.ProjectCoefficient(curlE_cf);
char vishost[] = "localhost";
int visport = 19916;
socketstream E_sock(vishost, visport);
E_sock.precision(8);
E_sock << "solution\n"
<< mesh << E_gf
<< "window_title 'Exact E'" << flush;
socketstream curlE_sock(vishost, visport);
curlE_sock.precision(8);
curlE_sock << "solution\n"
<< mesh << curlE_gf
<< "window_title 'Exact curlE'" << flush;
MixedBilinearForm a(E_fes,curlE_fes);
a.AddDomainIntegrator(new CurlIntegrator());
a.Assemble();
Array<int> empty;
SparseMatrix A;
a.FormRectangularSystemMatrix(empty,empty,A);
Vector curl_load(A.Height());
A.Mult(E_gf,curl_load);
BilinearForm m(curlE_fes);
m.AddDomainIntegrator(new VectorMassIntegrator);
m.Assemble();
SparseMatrix M;
m.FormSystemMatrix(empty, M);
GSSmoother prec(M);
PCG(M, prec, curl_load, curlE_gf, 1, 200, 1e-12, 0.0);
socketstream curlE2_sock(vishost, visport);
curlE2_sock.precision(8);
curlE2_sock << "solution\n"
<< mesh << curlE_gf
<< "window_title 'Numerical curlE'" << flush;
delete E_fec;
delete E_fes;
delete curlE_fec;
delete curlE_fes;
return 0;
}
void E_exact_r(const Vector &x, Vector & E_r)
{
Vector curlE_r;
Vector curlcurlE_r;
maxwell_solution_r(x,E_r,curlE_r,curlcurlE_r);
}
void curlE_exact_r(const Vector &x, Vector &curlE_r)
{
Vector E_r;
Vector curlcurlE_r;
maxwell_solution_r(x,E_r,curlE_r,curlcurlE_r);
}
void maxwell_solution(const Vector & X, std::vector<complex<double>> &E,
std::vector<complex<double>> &curlE,
std::vector<complex<double>> &curlcurlE)
{
double x = X(0);
double y = X(1);
double z;
if (dim == 3)
{
z = X(2);
}
E.resize(dim);
curlE.resize(dimc);
curlcurlE.resize(dim);
if (dim == 3)
{
E[0] = y * z * (1.0 - y) * (1.0 - z);
E[1] = x * y * z * (1.0 - x) * (1.0 - z);
E[2] = x * y * (1.0 - x) * (1.0 - y);
curlE[0] = (1.0 - x) * x * (y*(2.0*z-3.0)+1.0);
curlE[1] = 2.0*(1.0 - y)*y*(x-z);
curlE[2] = (z-1)*z*(1.0+y*(2.0*x-3.0));
curlcurlE[0] = 2.0 * y * (1.0 - y) - (2.0 * x - 3.0) * z * (1 - z);
curlcurlE[1] = 2.0 * y * (x * (1.0 - x) + (1.0 - z) * z);
curlcurlE[2] = 2.0 * y * (1.0 - y) + x * (3.0 - 2.0 * z) * (1.0 - x);
}
else if (dim == 2)
{
double c = 2.0*M_PI;
E[0] = sin(c * y);
E[1] = sin(c * x);
curlE[0] = c * (cos(c*x) - cos(c*y));
curlcurlE[0] = c*c * sin(c*y);
curlcurlE[1] = c*c * sin(c*x);
}
else
{
MFEM_ABORT("Dimension cannot be 1");
}
}
void maxwell_solution_r(const Vector & X, Vector &E_r,
Vector &curlE_r,
Vector &curlcurlE_r)
{
E_r.SetSize(dim);
curlE_r.SetSize(dimc);
curlcurlE_r.SetSize(dim);
std::vector<complex<double>> E;
std::vector<complex<double>> curlE;
std::vector<complex<double>> curlcurlE;
maxwell_solution(X,E,curlE,curlcurlE);
for (int i = 0; i<dim; i++)
{
E_r(i) = E[i].real();
curlcurlE_r(i) = curlcurlE[i].real();
}
for (int i = 0; i<dimc; i++)
{
curlE_r(i) = curlE[i].real();
}
}
+9
View File
@@ -30,6 +30,7 @@
//
// Device sample runs:
// ex1 -pa -d cuda
// ex1 -fa -d cuda
// ex1 -pa -d raja-cuda
// * ex1 -pa -d raja-hip
// ex1 -pa -d occa-cuda
@@ -37,9 +38,13 @@
// ex1 -pa -d occa-omp
// ex1 -pa -d ceed-cpu
// ex1 -pa -d ceed-cpu -o 4 -a
// ex1 -pa -d ceed-cpu -m ../data/square-mixed.mesh
// ex1 -pa -d ceed-cpu -m ../data/fichera-mixed.mesh
// * ex1 -pa -d ceed-cuda
// * ex1 -pa -d ceed-hip
// ex1 -pa -d ceed-cuda:/gpu/cuda/shared
// ex1 -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/square-mixed.mesh
// ex1 -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/fichera-mixed.mesh
// ex1 -m ../data/beam-hex.mesh -pa -d cuda
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cpu
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cuda:/gpu/cuda/ref
@@ -73,6 +78,7 @@ int main(int argc, char *argv[])
int order = 1;
bool static_cond = false;
bool pa = false;
bool fa = false;
const char *device_config = "cpu";
bool visualization = true;
bool algebraic_ceed = false;
@@ -87,6 +93,8 @@ int main(int argc, char *argv[])
"--no-static-condensation", "Enable static condensation.");
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
"--no-partial-assembly", "Enable Partial Assembly.");
args.AddOption(&fa, "-fa", "--full-assembly", "-no-fa",
"--no-full-assembly", "Enable Full Assembly.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
#ifdef MFEM_USE_CEED
@@ -184,6 +192,7 @@ int main(int argc, char *argv[])
// domain integrator.
BilinearForm a(&fespace);
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
if (fa) { a.SetAssemblyLevel(AssemblyLevel::FULL); }
a.AddDomainIntegrator(new DiffusionIntegrator(one));
// 10. Assemble the bilinear form and the corresponding linear system,
+9
View File
@@ -30,13 +30,18 @@
//
// Device sample runs:
// mpirun -np 4 ex1p -pa -d cuda
// mpirun -np 4 ex1p -fa -d cuda
// mpirun -np 4 ex1p -pa -d occa-cuda
// mpirun -np 4 ex1p -pa -d raja-omp
// mpirun -np 4 ex1p -pa -d ceed-cpu
// mpirun -np 4 ex1p -pa -d ceed-cpu -o 4 -a
// mpirun -np 4 ex1p -pa -d ceed-cpu -m ../data/square-mixed.mesh
// mpirun -np 4 ex1p -pa -d ceed-cpu -m ../data/fichera-mixed.mesh
// * mpirun -np 4 ex1p -pa -d ceed-cuda
// * mpirun -np 4 ex1p -pa -d ceed-hip
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/square-mixed.mesh
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/fichera-mixed.mesh
// mpirun -np 4 ex1p -m ../data/beam-tet.mesh -pa -d ceed-cpu
//
// Description: This example code demonstrates the use of MFEM to define a
@@ -74,6 +79,7 @@ int main(int argc, char *argv[])
int order = 1;
bool static_cond = false;
bool pa = false;
bool fa = false;
const char *device_config = "cpu";
bool visualization = true;
bool algebraic_ceed = false;
@@ -88,6 +94,8 @@ int main(int argc, char *argv[])
"--no-static-condensation", "Enable static condensation.");
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
"--no-partial-assembly", "Enable Partial Assembly.");
args.AddOption(&fa, "-fa", "--full-assembly", "-no-fa",
"--no-full-assembly", "Enable Full Assembly.");
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
#ifdef MFEM_USE_CEED
@@ -211,6 +219,7 @@ int main(int argc, char *argv[])
// Diffusion domain integrator.
ParBilinearForm a(&fespace);
if (pa) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
if (fa) { a.SetAssemblyLevel(AssemblyLevel::FULL); }
a.AddDomainIntegrator(new DiffusionIntegrator(one));
// 12. Assemble the parallel bilinear form and the corresponding linear
+1 -1
View File
@@ -182,7 +182,7 @@ int main(int argc, char *argv[])
}
for (int level = 0; level < order_refinements; ++level)
{
collections.Append(new H1_FECollection(std::pow(2, level+1), dim));
collections.Append(new H1_FECollection((int)std::pow(2, level+1), dim));
fespaces.AddOrderRefinedLevel(collections.Last());
}
+1 -1
View File
@@ -219,7 +219,7 @@ int main(int argc, char *argv[])
}
for (int level = 0; level < order_refinements; ++level)
{
collections.Append(new H1_FECollection(std::pow(2, level+1), dim));
collections.Append(new H1_FECollection((int)std::pow(2, level+1), dim));
fespaces->AddOrderRefinedLevel(collections.Last());
}
+280 -68
View File
@@ -3,34 +3,63 @@
// Compile with: make ex33
//
// Sample runs: ex33 -m ../data/square-disc.mesh -alpha 0.33 -o 2
// ex33 -m ../data/square-disc.mesh -alpha 4.5 -o 3
// ex33 -m ../data/star.mesh -alpha 1.4 -o 3
// ex33 -m ../data/star.mesh -alpha 0.99 -o 3
// ex33 -m ../data/inline-quad.mesh -alpha 0.5 -o 3
// ex33 -m ../data/amr-quad.mesh -alpha 1.5 -o 3
// ex33 -m ../data/disc-nurbs.mesh -alpha 0.33 -o 3
// ex33 -m ../data/disc-nurbs.mesh -alpha 2.4 -o 3 -r 4
// ex33 -m ../data/l-shape.mesh -alpha 0.33 -o 3 -r 4
// ex33 -m ../data/l-shape.mesh -alpha 1.7 -o 3 -r 5
//
// Verification runs:
// ex33 -m ../data/inline-segment.mesh -ver -alpha 1.7 -o 2 -r 2
// ex33 -m ../data/inline-quad.mesh -ver -alpha 1.2 -o 2 -r 2
// ex33 -m ../data/amr-quad.mesh -ver -alpha 2.6 -o 2 -r 2
// ex33 -m ../data/inline-hex.mesh -ver -alpha 0.3 -o 2 -r 1
//
// Note: the analytic solution to this problem is u = ∏_{i=0}^{dim-1} sin(π x_i)
// for all alpha.
//
// Description:
//
// In this example we solve the following fractional PDE with MFEM:
//
// ( - Δ )^α u = f in Ω, u = 0 on ∂Ω, 0 < α < 1,
// ( - Δ )^α u = f in Ω, u = 0 on ∂Ω, 0 < α,
//
// To solve this FPDE, we rely on a rational approximation [2] of the normal
// linear operator A^{-α}, where A = - Δ (with associated homogeneous
// boundary conditions). Namely, we first approximate the operator
// To solve this FPDE, we apply the operator ( - Δ )^(-N), where the integer
// N is given by floor(α). By doing so, we obtain
//
// A^{-α} ≈ Σ_{i=0}^N c_i (A + d_i I)^{-1}, d_0 = 0, d_i > 0,
// ( - Δ )^(α-N) u = ( - Δ )^(-N) f in Ω, u = 0 on ∂Ω, 0 < α.
//
// We first compute the right hand side by solving the integer order PDE
//
// ( - Δ )^N g = f in Ω, g = ( - Δ )^k g = 0 on ∂Ω, k = 1,..,N-1
//
// The remaining FPDE is then given by
//
// ( - Δ )^(α-N) u = g in Ω, u = 0 on ∂Ω.
//
// We rely on a rational approximation [2] of the normal linear operator
// A^{-α + N}, where A = - Δ (with associated homogeneous boundary conditions)
// and (a-N) in (0,1). We approximate the operator
//
// A^{-α+N} ≈ Σ_{i=0}^M c_i (A + d_i I)^{-1}, d_0 = 0, d_i > 0,
//
// where I is the L2-identity operator and the coefficients c_i and d_i
// are generated offline to a prescribed accuracy in a pre-processing step.
// We use the triple-A algorithm [1] to generate the rational approximation
// that this partial fractional expansion derives from. We then solve N+1
// that this partial fractional expansion derives from. We then solve M+1
// independent integer-order PDEs,
//
// A u_i + d_i u_i = c_i f in Ω, u_i = 0 on ∂Ω, i=0,...,N,
// A u_i + d_i u_i = c_i g in Ω, u_i = 0 on ∂Ω, i=0,...,M,
//
// using MFEM and sum u_i to arrive at an approximate solution of the FPDE
//
// u ≈ Σ_{i=0}^N u_i.
// u ≈ Σ_{i=0}^M u_i.
//
// (If alpha is an integer, we stop after the first PDE was solved.)
//
// References:
//
@@ -47,6 +76,8 @@
#include "mfem.hpp"
#include <fstream>
#include <iostream>
#include <math.h>
#include <string>
#include "ex33.hpp"
@@ -59,8 +90,9 @@ int main(int argc, char *argv[])
const char *mesh_file = "../data/star.mesh";
int order = 1;
int num_refs = 3;
bool visualization = true;
double alpha = 0.5;
bool visualization = true;
bool verification = false;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
@@ -75,6 +107,9 @@ int main(int argc, char *argv[])
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&verification, "-ver", "--verification", "-no-ver",
"--no-verification",
"Use sinusoidal function (f) for analytic comparison.");
args.Parse();
if (!args.Good())
{
@@ -84,9 +119,31 @@ int main(int argc, char *argv[])
args.PrintOptions(cout);
Array<double> coeffs, poles;
int progress_steps = 1;
// 2. Compute the coefficients that define the integer-order PDEs.
ComputePartialFractionApproximation(alpha,coeffs,poles);
// 2. Compute the rational expansion coefficients that define the
// integer-order PDEs.
const int power_of_laplace = floor(alpha);
double exponent_to_approximate = alpha - power_of_laplace;
bool integer_order = false;
// Check if alpha is an integer or not.
if (abs(exponent_to_approximate) > 1e-12)
{
mfem::out << "Approximating the fractional exponent "
<< exponent_to_approximate
<< endl;
ComputePartialFractionApproximation(exponent_to_approximate, coeffs,
poles);
// If the example is build without LAPACK, the exponent_to_approximate
// might be modified by the function call above.
alpha = exponent_to_approximate + power_of_laplace;
}
else
{
integer_order = true;
mfem::out << "Treating integer order PDE." << endl;
}
// 3. Read the mesh from the given mesh file.
Mesh mesh(mesh_file, 1, 1);
@@ -99,8 +156,8 @@ int main(int argc, char *argv[])
}
// 5. Define a finite element space on the mesh.
FiniteElementCollection *fec = new H1_FECollection(order, dim);
FiniteElementSpace fespace(&mesh, fec);
H1_FECollection fec(order, dim);
FiniteElementSpace fespace(&mesh, &fec);
cout << "Number of finite element unknowns: "
<< fespace.GetTrueVSize() << endl;
@@ -114,79 +171,234 @@ int main(int argc, char *argv[])
}
// 7. Define diffusion coefficient, load, and solution GridFunction.
ConstantCoefficient f(1.0);
auto func = [&alpha](const Vector &x)
{
double val = 1.0;
for (int i=0; i<x.Size(); i++)
{
val *= sin(M_PI*x(i));
}
return pow(x.Size()*pow(M_PI,2), alpha) * val;
};
FunctionCoefficient f(func);
ConstantCoefficient one(1.0);
GridFunction u(&fespace);
u = 0.;
GridFunction x(&fespace);
GridFunction g(&fespace);
u = 0.0;
x = 0.0;
g = 0.0;
// 8. Prepare for visualization.
char vishost[] = "localhost";
int visport = 19916;
socketstream xout, uout;
ostringstream oss_x, oss_u;
if (visualization)
// 9. Set up the linear form b(.) for integer-order PDE solves.
LinearForm b(&fespace);
if (verification)
{
xout.open(vishost, visport);
xout.precision(8);
uout.open(vishost, visport);
uout.precision(8);
// This statement is only relevant for the verification of the code. It
// uses a different f such that an analytic solution is known and easy
// to compare with the numerical one. The FPDE becomes:
// (-Δ)^α u = (2\pi ^2)^α sin(\pi x) sin(\pi y) on [0,1]^2
// -> u(x,y) = sin(\pi x) sin(\pi y)
b.AddDomainIntegrator(new DomainLFIntegrator(f));
}
for (int i = 0; i < coeffs.Size(); i++)
else
{
// 9. Set up the linear form b(.) for integer-order PDE solve.
LinearForm b(&fespace);
ProductCoefficient cf(coeffs[i], f);
b.AddDomainIntegrator(new DomainLFIntegrator(cf));
b.Assemble();
b.AddDomainIntegrator(new DomainLFIntegrator(one));
}
b.Assemble();
// 10. Define GridFunction for integer-order PDE solve.
GridFunction x(&fespace);
x = 0.0;
// ------------------------------------------------------------------------
// 10. Solve the PDE (-Δ)^N g = f, i.e. compute g = (-Δ)^{-1}^N f.
// ------------------------------------------------------------------------
// 11. Set up the bilinear form a(.,.) for integer-order PDE solve.
BilinearForm a(&fespace);
a.AddDomainIntegrator(new DiffusionIntegrator(one));
ConstantCoefficient c2(-poles[i]);
a.AddDomainIntegrator(new MassIntegrator(c2));
a.Assemble();
if (power_of_laplace > 0)
{
// 10.1 Compute Stiffnes Matrix
BilinearForm k(&fespace);
k.AddDomainIntegrator(new DiffusionIntegrator(one));
k.Assemble();
// 12. Assemble the bilinear form and the corresponding linear system.
OperatorPtr A;
// 10.2 Compute Mass Matrix
BilinearForm m(&fespace);
m.AddDomainIntegrator(new MassIntegrator(one));
m.Assemble();
SparseMatrix mass;
Array<int> empty;
m.FormSystemMatrix(empty, mass);
// 10.3 Form the system of equations
Vector B, X;
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
OperatorPtr Op;
k.FormLinearSystem(ess_tdof_list, g, b, Op, X, B);
GSSmoother M((SparseMatrix&)(*Op));
// 13. Solve the linear system A X = B.
GSSmoother M((SparseMatrix&)(*A));
mfem::out << "\nSolving PDE -Δ u + " << -poles[i]
<< " u = " << coeffs[i] << " f " << endl;
PCG(*A, M, B, X, 3, 200, 1e-12, 0.0);
// 14. Recover the solution as a finite element grid function.
a.RecoverFEMSolution(X, b, x);
// 15. Accumulate integer-order PDE solutions.
u+=x;
// 16. Send the solutions by socket to a GLVis server.
if (visualization)
mfem::out << "\nComputing (-Δ) ^ -" << power_of_laplace
<< " ( f ) " << endl;
for (int i = 0; i < power_of_laplace; i++)
{
oss_x.str(""); oss_x.clear();
oss_x << "Solution of PDE -Δ u + " << -poles[i]
<< " u = " << coeffs[i] << " f";
xout << "solution\n" << mesh << x
<< "window_title '" << oss_x.str() << "'" << flush;
// 10.4 Solve the linear system Op X = B (N times).
PCG(*Op, M, B, X, 3, 300, 1e-12, 0.0);
oss_u.str(""); oss_u.clear();
oss_u << "Solution of fractional PDE -Δ^" << alpha
<< " u = f";
uout << "solution\n" << mesh << u
<< "window_title '" << oss_u.str() << "'" << flush;
// 10.5 Visualize the solution g of -Δ ^ N g = f in the last step
if (i == power_of_laplace - 1)
{
// Needed for visualization and solution verification.
k.RecoverFEMSolution(X, b, g);
if (integer_order && verification)
{
// For an integer order PDE, g is also our solution u.
u+=g;
}
if (visualization)
{
socketstream fout;
ostringstream oss_f;
fout.open(vishost, visport);
fout.precision(8);
oss_f.str(""); oss_f.clear();
oss_f << "Step " << progress_steps++ << ": Solution of PDE -Δ ^ "
<< power_of_laplace
<< " g = f";
fout << "solution\n" << mesh << g
<< "window_title '" << oss_f.str() << "'" << flush;
}
}
// 10.6 Prepare for next iteration (primal / dual space)
mass.Mult(X, B);
X.SetSubVectorComplement(ess_tdof_list,0.0);
}
// 10.7 Extract solution for the next step. The b now corresponds to the
// function g in the PDE.
const SparseMatrix * R = fespace.GetRestrictionMatrix();
if (R)
{
R->MultTranspose(B,b);
}
else
{
b = B;
}
}
// 17. Free the used memory.
delete fec;
// ------------------------------------------------------------------------
// 11. Solve the fractional PDE by solving M integer order PDEs and adding
// up the solutions.
// ------------------------------------------------------------------------
if (!integer_order)
{
// Setup visualization.
socketstream xout, uout;
ostringstream oss_x, oss_u;
if (visualization)
{
xout.open(vishost, visport);
xout.precision(8);
uout.open(vishost, visport);
uout.precision(8);
}
// Iterate over all expansion coefficient that contribute to the
// solution.
for (int i = 0; i < coeffs.Size(); i++)
{
mfem::out << "\nSolving PDE -Δ u + " << -poles[i]
<< " u = " << coeffs[i] << " g " << endl;
// 11.1 Reset GridFunction for integer-order PDE solve.
x = 0.0;
// 11.2 Set up the bilinear form a(.,.) for integer-order PDE solve.
BilinearForm a(&fespace);
a.AddDomainIntegrator(new DiffusionIntegrator(one));
ConstantCoefficient d_i(-poles[i]);
a.AddDomainIntegrator(new MassIntegrator(d_i));
a.Assemble();
// 11.3 Assemble the bilinear form and the corresponding linear system.
OperatorPtr A;
Vector B, X;
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
// 11.4 Solve the linear system A X = B.
GSSmoother M((SparseMatrix&)(*A));
PCG(*A, M, B, X, 3, 300, 1e-12, 0.0);
// 11.5 Recover the solution as a finite element grid function.
a.RecoverFEMSolution(X, b, x);
// 11.6 Accumulate integer-order PDE solutions.
x *= coeffs[i];
u += x;
// 11.7 Send fractional PDE solution to a GLVis server.
if (visualization)
{
oss_x.str(""); oss_x.clear();
oss_x << "Step " << progress_steps
<< ": Solution of PDE -Δ u + " << -poles[i]
<< " u = " << coeffs[i] << " g";
xout << "solution\n" << mesh << x
<< "window_title '" << oss_x.str() << "'" << flush;
oss_u.str(""); oss_u.clear();
oss_u << "Step " << progress_steps + 1
<< ": Solution of fractional PDE (-Δ)^" << alpha
<< " u = f";
uout << "solution\n" << mesh << u
<< "window_title '" << oss_u.str() << "'"
<< flush;
}
}
}
// ------------------------------------------------------------------------
// 12. (optional) Verify the solution.
// ------------------------------------------------------------------------
if (verification)
{
auto solution = [] (const Vector &x)
{
double val = 1.0;
for (int i=0; i<x.Size(); i++)
{
val *= sin(M_PI*x(i));
}
return val;
};
FunctionCoefficient sol(solution);
double l2_error = u.ComputeL2Error(sol);
string analytic_solution,expected_mesh;
switch (dim)
{
case 1:
analytic_solution = "sin(π x)";
expected_mesh = "inline_segment.mesh";
break;
case 2:
analytic_solution = "sin(π x) sin(π y)";
expected_mesh = "inline_quad.mesh";
break;
default:
analytic_solution = "sin(π x) sin(π y) sin(π z)";
expected_mesh = "inline_hex.mesh";
break;
}
mfem::out << "\n" << string(80,'=')
<< "\n\nSolution Verification in "<< dim << "D \n\n"
<< "Analytic solution : " << analytic_solution << "\n"
<< "Expected mesh : " << expected_mesh <<"\n"
<< "Your mesh : " << mesh_file << "\n"
<< "L2 error : " << l2_error << "\n\n"
<< string(80,'=') << endl;
}
return 0;
}
+15 -4
View File
@@ -32,6 +32,7 @@
#include "mfem.hpp"
#include <fstream>
#include <iostream>
#include <string>
using namespace std;
using namespace mfem;
@@ -249,6 +250,13 @@ void PartialFractionExpansion(double scale, Array<double> & poles,
coeffs.SetSize(psize);
coeffs = scale;
// Note: C p(z)/q(z) = Σ_i c_i / (z - p_i) results in an system of equations
// where the N unknowns are the coefficients c_i. After multiplying the
// system with q(z), the coefficients c_i can be computed analytically by
// choosing N values for z. Choosing z_j = = p_j diagonalizes the system and
// one can obtain an analytic form for the c_i coefficients. The result is
// implemented in the code block below.
for (int i=0; i<psize; i++)
{
double tmp_numer=1.0;
@@ -305,9 +313,12 @@ void ComputePartialFractionApproximation(double & alpha,
if (print_warning)
{
mfem::out
<< "\nMFEM is compiled without LAPACK.\nUsing precomputed values for PartialFractionApproximation. \n"
<< "Only alpha = 0.33, 0.5, and 0.99 are available.\nThe default is alpha = 0.5."
<< std::endl;
<< "\n" << string(80, '=')
<< "\nMFEM is compiled without LAPACK."
<< "\nUsing precomputed values for PartialFractionApproximation."
<< "\nOnly alpha = 0.33, 0.5, and 0.99 are available."
<< "\nThe default is alpha = 0.5.\n" << string(80, '=') << "\n"
<< endl;
}
const double eps = std::numeric_limits<double>::epsilon();
@@ -351,7 +362,7 @@ void ComputePartialFractionApproximation(double & alpha,
if (print_warning)
{
mfem::out << "Using precomputed values for alpha = "
mfem::out << "=> Using precomputed values for alpha = "
<< alpha << "\n" << std::endl;
}
+294 -143
View File
@@ -3,34 +3,63 @@
// Compile with: make ex33p
//
// Sample runs: mpirun -np 4 ex33p -m ../data/square-disc.mesh -alpha 0.33 -o 2
// mpirun -np 4 ex33p -m ../data/square-disc.mesh -alpha 4.5 -o 3
// mpirun -np 4 ex33p -m ../data/star.mesh -alpha 1.4 -o 3
// mpirun -np 4 ex33p -m ../data/star.mesh -alpha 0.99 -o 3
// mpirun -np 4 ex33p -m ../data/inline-quad.mesh -alpha 0.5 -o 3
// mpirun -np 4 ex33p -m ../data/disc-nurbs.mesh -alpha 0.33 -o 3
// mpirun -np 4 ex33p -m ../data/amr-quad.mesh -alpha 1.5 -o 3
// mpirun -np 4 ex33p -m ../data/disc-nurbs.mesh -alpha 0.33 -o 3 -r 2
// mpirun -np 4 ex33p -m ../data/disc-nurbs.mesh -alpha 2.4 -o 3 -r 4
// mpirun -np 4 ex33p -m ../data/l-shape.mesh -alpha 0.33 -o 3 -r 4
// mpirun -np 4 ex33p -m ../data/l-shape.mesh -alpha 1.7 -o 3 -r 5
//
// Verification runs:
// mpirun -np 4 ex33p -m ../data/inline-segment.mesh -ver -alpha 1.7 -o 2 -r 2
// mpirun -np 4 ex33p -m ../data/inline-quad.mesh -ver -alpha 1.2 -o 2 -r 2
// mpirun -np 4 ex33p -m ../data/amr-quad.mesh -ver -alpha 2.6 -o 2 -r 2
// mpirun -np 4 ex33p -m ../data/inline-hex.mesh -ver -alpha 0.3 -o 2 -r 1
// Note: the analytic solution to this problem is u = ∏_{i=0}^{dim-1} sin(π x_i)
// for all alpha.
//
// Description:
//
// In this example we solve the following fractional PDE with MFEM:
//
// ( - Δ )^α u = f in Ω, u = 0 on ∂Ω, 0 < α < 1,
// ( - Δ )^α u = f in Ω, u = 0 on ∂Ω, 0 < α,
//
// To solve this FPDE, we rely on a rational approximation [2] of the normal
// linear operator A^{-α}, where A = - Δ (with associated homogeneous
// boundary conditions). Namely, we first approximate the operator
// To solve this FPDE, we apply the operator ( - Δ )^(-N), where the integer
// N is given by floor(α). By doing so, we obtain
//
// A^{-α} ≈ Σ_{i=0}^N c_i (A + d_i I)^{-1}, d_0 = 0, d_i > 0,
// ( - Δ )^(α-N) u = ( - Δ )^(-N) f in Ω, u = 0 on ∂Ω, 0 < α.
//
// We first compute the right hand side by solving the integer order PDE
//
// ( - Δ )^N g = f in Ω, g = ( - Δ )^k g = 0 on ∂Ω, k = 1,..,N-1
//
// The remaining FPDE is then given by
//
// ( - Δ )^(α-N) u = g in Ω, u = 0 on ∂Ω.
//
// We rely on a rational approximation [2] of the normal linear operator
// A^{-α + N}, where A = - Δ (with associated homogeneous boundary conditions)
// and (a-N) in (0,1). We approximate the operator
//
// A^{-α+N} ≈ Σ_{i=0}^M c_i (A + d_i I)^{-1}, d_0 = 0, d_i > 0,
//
// where I is the L2-identity operator and the coefficients c_i and d_i
// are generated offline to a prescribed accuracy in a pre-processing step.
// We use the triple-A algorithm [1] to generate the rational approximation
// that this partial fractional expansion derives from. We then solve N+1
// that this partial fractional expansion derives from. We then solve M+1
// independent integer-order PDEs,
//
// A u_i + d_i u_i = c_i f in Ω, u_i = 0 on ∂Ω, i=0,...,N,
// A u_i + d_i u_i = c_i g in Ω, u_i = 0 on ∂Ω, i=0,...,M,
//
// using MFEM and sum u_i to arrive at an approximate solution of the FPDE
//
// u ≈ Σ_{i=0}^N u_i.
// u ≈ Σ_{i=0}^M u_i.
//
// (If alpha is an integer, we stop after the first PDE was solved.)
//
// References:
//
@@ -47,6 +76,8 @@
#include "mfem.hpp"
#include <fstream>
#include <iostream>
#include <math.h>
#include <string>
#include "ex33.hpp"
@@ -65,9 +96,9 @@ int main(int argc, char *argv[])
const char *mesh_file = "../data/star.mesh";
int order = 1;
int num_refs = 3;
bool visualization = true;
bool visualize_x = false;
double alpha = 0.5;
bool visualization = true;
bool verification = false;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
@@ -79,12 +110,12 @@ int main(int argc, char *argv[])
"Number of uniform refinements");
args.AddOption(&alpha, "-alpha", "--alpha",
"Fractional exponent");
args.AddOption(&visualize_x, "-vis_x", "--visualize_x", "-no-vis_x",
"--no-visualization_x",
"Enable or disable GLVis visualization of each integer-order PDE solution.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization of the fractional PDE solution.");
"Enable or disable GLVis visualization.");
args.AddOption(&verification, "-ver", "--verification", "-no-ver",
"--no-verification",
"Use sinusoidal function (f) for analytic comparison.");
args.Parse();
if (!args.Good())
{
@@ -97,61 +128,51 @@ int main(int argc, char *argv[])
}
Array<double> coeffs, poles;
int progress_steps = 1;
// 2. Compute the coefficients that define the integer-order PDEs.
ComputePartialFractionApproximation(alpha,coeffs,poles);
int num_par_solves;
int max_par_solves = max(1,num_procs/2);
for (num_par_solves=max_par_solves; num_par_solves>0; num_par_solves--)
// 2. Compute the rational expansion coefficients that define the
// integer-order PDEs.
const int power_of_laplace = floor(alpha);
double exponent_to_approximate = alpha - power_of_laplace;
bool integer_order = false;
// Check if alpha is an integer or not.
if (abs(exponent_to_approximate) > 1e-12)
{
if (num_procs%num_par_solves==0 && num_par_solves<coeffs.Size())
if (Mpi::Root())
{
break;
mfem::out << "Approximating the fractional exponent "
<< exponent_to_approximate
<< endl;
}
ComputePartialFractionApproximation(exponent_to_approximate, coeffs,
poles);
// If the example is build without LAPACK, the exponent_to_approximate
// might be modified by the function call above.
alpha = exponent_to_approximate + power_of_laplace;
}
else
{
integer_order = true;
if (Mpi::Root())
{
mfem::out << "Treating integer order PDE." << endl;
}
}
if (num_par_solves == 1) {num_par_solves = num_procs;}
int solver_ranks = num_procs/num_par_solves;
// 3. Split the MPI communicator:
// row_comm is used for parallel partition of the mesh
// col_comm is used for independent integer-order solves
int row_color = myid / solver_ranks; // Determine color based on row
int col_color = myid % solver_ranks; // Determine color based on col
MPI_Comm row_comm, col_comm;
MPI_Comm_split(MPI_COMM_WORLD, row_color, myid, &row_comm);
MPI_Comm_split(MPI_COMM_WORLD, col_color, myid, &col_comm);
int row_rank, row_size, col_rank, col_size;
MPI_Comm_rank(row_comm, &row_rank);
MPI_Comm_size(row_comm, &row_size);
MPI_Comm_rank(col_comm, &col_rank);
MPI_Comm_size(col_comm, &col_size);
if (Mpi::Root())
{
mfem::out << "\nTotal number of MPI ranks = " << num_procs << endl;
mfem::out << "Number of independent parallel solves = " << col_size << endl;
mfem::out << "Number of MPI ranks within each solve = " << row_size
<<"\n" << endl;
}
// 4. Read the mesh from the given mesh file.
// 3. Read the mesh from the given mesh file.
Mesh mesh(mesh_file, 1, 1);
int dim = mesh.Dimension();
// 5. Refine the mesh to increase the resolution.
// 4. Refine the mesh to increase the resolution.
for (int i = 0; i < num_refs; i++)
{
mesh.UniformRefinement();
}
ParMesh pmesh(row_comm, mesh);
ParMesh pmesh(MPI_COMM_WORLD, mesh);
mesh.Clear();
// 6. Define a finite element space on the mesh.
// 5. Define a finite element space on the mesh.
H1_FECollection fec(order, dim);
ParFiniteElementSpace fespace(&pmesh, &fec);
if (Mpi::Root())
@@ -160,7 +181,7 @@ int main(int argc, char *argv[])
<< fespace.GetTrueVSize() << endl;
}
// 7. Determine the list of true (i.e. conforming) essential boundary dofs.
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
Array<int> ess_tdof_list;
if (pmesh.bdr_attributes.Size())
{
@@ -169,120 +190,250 @@ int main(int argc, char *argv[])
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
}
// 8. Define diffusion coefficient, load, and solution GridFunction.
ConstantCoefficient f(1.0);
// 7. Define diffusion coefficient, load, and solution GridFunction.
auto func = [&alpha](const Vector &x)
{
double val = 1.0;
for (int i=0; i<x.Size(); i++)
{
val *= sin(M_PI*x(i));
}
return pow(x.Size()*pow(M_PI,2), alpha) * val;
};
FunctionCoefficient f(func);
ConstantCoefficient one(1.0);
ParGridFunction u(&fespace);
ParGridFunction x(&fespace);
ParGridFunction g(&fespace);
u = 0.0;
x = 0.0;
g = 0.0;
// 8. Prepare for visualization.
char vishost[] = "localhost";
int visport = 19916;
// 9. Set up the linear form b(.) for integer-order PDE solves.
ParLinearForm b(&fespace);
b.AddDomainIntegrator(new DomainLFIntegrator(f));
if (verification)
{
// This statement is only relevant for the verification of the code. It
// uses a different f such that an analytic solution is known and easy
// to compare with the numerical one. The FPDE becomes:
// (-Δ)^α u = (2\pi ^2)^α sin(\pi x) sin(\pi y) on [0,1]^2
// -> u(x,y) = sin(\pi x) sin(\pi y)
b.AddDomainIntegrator(new DomainLFIntegrator(f));
}
else
{
b.AddDomainIntegrator(new DomainLFIntegrator(one));
}
b.Assemble();
int my_coeff_size = max(coeffs.Size()/col_size,1);
int ibeg = col_rank*my_coeff_size;
if (ibeg + 2*my_coeff_size > coeffs.Size())
// ------------------------------------------------------------------------
// 10. Solve the PDE (-Δ)^N g = f, i.e. compute g = (-Δ)^{-1}^N f.
// ------------------------------------------------------------------------
if (power_of_laplace > 0)
{
my_coeff_size = coeffs.Size()-col_rank*my_coeff_size;
}
else if (ibeg > coeffs.Size() - 1)
{
my_coeff_size = 0;
}
// 10.1 Compute Stiffnes Matrix
ParBilinearForm k(&fespace);
k.AddDomainIntegrator(new DiffusionIntegrator(one));
k.Assemble();
int iend = ibeg+my_coeff_size;
// 10.2 Compute Mass Matrix
ParBilinearForm m(&fespace);
m.AddDomainIntegrator(new MassIntegrator(one));
m.Assemble();
HypreParMatrix mass;
Array<int> empty;
m.FormSystemMatrix(empty, mass);
for (int i = ibeg; i < iend; i++)
{
// 10. Reset GridFunction for integer-order PDE solve.
x = 0.0;
// 11. Set up the bilinear form a(.,.) for integer-order PDE solve.
ParBilinearForm a(&fespace);
a.AddDomainIntegrator(new DiffusionIntegrator(one));
ConstantCoefficient d_i(-poles[i]);
a.AddDomainIntegrator(new MassIntegrator(d_i));
a.Assemble();
// 12. Assemble the bilinear form and the corresponding linear system.
OperatorPtr A;
// 10.3 Form the system of equations
Vector B, X;
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
// 13. Solve the linear system A X = B.
HypreBoomerAMG * prec = new HypreBoomerAMG;
prec->SetPrintLevel(-1);
int print_level = (col_rank==0) ? 3 : 0;
if (Mpi::Root())
{
mfem::out << "\nMPI rank " << myid
<< ": Solving PDE -Δ u + " << -poles[i]
<< " u = " << coeffs[i] << " f " << endl;
}
CGSolver cg(row_comm);
OperatorPtr Op;
k.FormLinearSystem(ess_tdof_list, g, b, Op, X, B);
HypreBoomerAMG prec;
prec.SetPrintLevel(-1);
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(print_level);
cg.SetPreconditioner(*prec);
cg.SetOperator(*A);
cg.Mult(B, X);
delete prec;
cg.SetPrintLevel(3);
cg.SetPreconditioner(prec);
cg.SetOperator(*Op);
// 14. Recover the solution as a finite element grid function.
a.RecoverFEMSolution(X, b, x);
// 15. Accumulate integer-order PDE solutions.
x *= coeffs[i];
u += x;
// 16. Send integer-order PDE solutions to a GLVis server.
if (visualize_x)
if (Mpi::Root())
{
if (col_rank > 0 && i < iend-1)
mfem::out << "\nComputing (-Δ) ^ -" << power_of_laplace
<< " ( f ) " << endl;
}
for (int i = 0; i < power_of_laplace; i++)
{
// 10.4 Solve the linear system Op X = B (N times).
cg.Mult(B, X);
// 10.5 Visualize the solution g of -Δ ^ N g = f in the last step
if (i == power_of_laplace - 1)
{
MPI_Status status;
MPI_Recv(nullptr,0,MPI_INT, col_rank-1,0,col_comm,&status);
// Needed for visualization and solution verification.
k.RecoverFEMSolution(X, b, g);
if (integer_order && verification)
{
// For an integer order PDE, g is also our solution u.
u+=g;
}
if (visualization)
{
socketstream fout;
ostringstream oss_f;
fout.open(vishost, visport);
fout.precision(8);
oss_f.str(""); oss_f.clear();
oss_f << "Step " << progress_steps++ << ": Solution of PDE -Δ ^ "
<< power_of_laplace
<< " g = f";
fout << "parallel " << num_procs << " " << myid << "\n"
<< "solution\n" << pmesh << g
<< "window_title '" << oss_f.str() << "'" << flush;
}
}
char vishost[] = "localhost";
int visport = 19916;
socketstream xout(vishost, visport);
// 10.6 Prepare for next iteration (primal / dual space)
mass.Mult(X, B);
X.SetSubVectorComplement(ess_tdof_list,0.0);
}
// 10.7 Extract solution for the next step. The b now corresponds to the
// function g in the PDE.
const SparseMatrix* rm = fespace.GetRestrictionMatrix();
rm->MultTranspose(B, b);
}
// ------------------------------------------------------------------------
// 11. Solve the fractional PDE by solving M integer order PDEs and adding
// up the solutions.
// ------------------------------------------------------------------------
if (!integer_order)
{
// Setup visualization.
socketstream xout, uout;
ostringstream oss_x, oss_u;
if (visualization)
{
xout.open(vishost, visport);
xout.precision(8);
ostringstream oss;
oss << "Solution of PDE -Δ u + " << -poles[i]
<< " u = " << coeffs[i] << " f" ;
xout << "parallel " << row_size << " " << row_rank << "\n";
xout << "solution\n" << pmesh << x
<< "window_title '" << oss.str() << "'" << flush;
if (col_rank < col_size-1)
uout.open(vishost, visport);
uout.precision(8);
}
// Iterate over all expansion coefficient that contribute to the
// solution.
for (int i = 0; i < coeffs.Size(); i++)
{
if (Mpi::Root())
{
MPI_Send(nullptr,0,MPI_INT,col_rank+1,0,col_comm);
mfem::out << "\nSolving PDE -Δ u + " << -poles[i]
<< " u = " << coeffs[i] << " g " << endl;
}
// 11.1 Reset GridFunction for integer-order PDE solve.
x = 0.0;
// 11.2 Set up the bilinear form a(.,.) for integer-order PDE solve.
ParBilinearForm a(&fespace);
a.AddDomainIntegrator(new DiffusionIntegrator(one));
ConstantCoefficient d_i(-poles[i]);
a.AddDomainIntegrator(new MassIntegrator(d_i));
a.Assemble();
// 11.3 Assemble the bilinear form and the corresponding linear system.
OperatorPtr A;
Vector B, X;
a.FormLinearSystem(ess_tdof_list, x, b, A, X, B);
// 11.4 Solve the linear system A X = B.
HypreBoomerAMG prec;
prec.SetPrintLevel(-1);
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(3);
cg.SetPreconditioner(prec);
cg.SetOperator(*A);
cg.Mult(B, X);
// 11.5 Recover the solution as a finite element grid function.
a.RecoverFEMSolution(X, b, x);
// 11.6 Accumulate integer-order PDE solutions.
x *= coeffs[i];
u += x;
// 11.7 Send fractional PDE solution to a GLVis server.
if (visualization)
{
oss_x.str(""); oss_x.clear();
oss_x << "Step " << progress_steps
<< ": Solution of PDE -Δ u + " << -poles[i]
<< " u = " << coeffs[i] << " g";
xout << "parallel " << num_procs << " " << myid << "\n"
<< "solution\n" << pmesh << x
<< "window_title '" << oss_x.str() << "'" << flush;
oss_u.str(""); oss_u.clear();
oss_u << "Step " << progress_steps + 1
<< ": Solution of fractional PDE (-Δ)^" << alpha
<< " u = f";
uout << "parallel " << num_procs << " " << myid << "\n"
<< "solution\n" << pmesh << u
<< "window_title '" << oss_u.str() << "'"
<< flush;
}
}
}
// 17. Accumulate for the fractional PDE solution
MPI_Allreduce(MPI_IN_PLACE, u.GetData(), u.Size(),
MPI_DOUBLE, MPI_SUM,col_comm);
// 18. Send fractional PDE solution to a GLVis server.
if (visualization)
// ------------------------------------------------------------------------
// 12. (optional) Verify the solution.
// ------------------------------------------------------------------------
if (verification)
{
if (col_rank == 0)
auto solution = [] (const Vector &x)
{
char vishost[] = "localhost";
int visport = 19916;
socketstream uout(vishost, visport);
uout.precision(8);
ostringstream oss;
oss << "Solution of fractional PDE -Δ^" << alpha
<< " u = f" ;
uout << "parallel " << row_size << " " << row_rank << "\n";
uout << "solution\n" << pmesh << u
<< "window_title '" << oss.str() << "'" << flush;
double val = 1.0;
for (int i=0; i<x.Size(); i++)
{
val *= sin(M_PI*x(i));
}
return val;
};
FunctionCoefficient sol(solution);
double l2_error = u.ComputeL2Error(sol);
if (Mpi::Root())
{
string analytic_solution,expected_mesh;
switch (dim)
{
case 1:
analytic_solution = "sin(π x)";
expected_mesh = "inline_segment.mesh";
break;
case 2:
analytic_solution = "sin(π x) sin(π y)";
expected_mesh = "inline_quad.mesh";
break;
default:
analytic_solution = "sin(π x) sin(π y) sin(π z)";
expected_mesh = "inline_hex.mesh";
break;
}
mfem::out << "\n" << string(80,'=')
<< "\n\nSolution Verification in "<< dim << "D \n\n"
<< "Analytic solution : " << analytic_solution << "\n"
<< "Expected mesh : " << expected_mesh <<"\n"
<< "Your mesh : " << mesh_file << "\n"
<< "L2 error : " << l2_error << "\n\n"
<< string(80,'=') << endl;
}
}
+27 -5
View File
@@ -72,8 +72,8 @@ int main(int argc, char *argv[])
// largest number that gives a final mesh with no more than 10,000
// elements.
{
int ref_levels =
(int)floor(log(10000./mesh->GetNE())/log(2.)/dim);
int ref_levels = 1;
// (int)floor(log(10000./mesh->GetNE())/log(2.)/dim);
for (int l = 0; l < ref_levels; l++)
{
mesh->UniformRefinement();
@@ -147,6 +147,8 @@ int main(int argc, char *argv[])
F.AddDomainIntegrator(new DomainLFIntegrator(one));
F.Assemble();
// 7. Set up the mixed bilinear form for the primal trial unknowns, B0,
// the mixed bilinear form for the interfacial unknowns, Bhat,
// the inverse stiffness matrix on the discontinuous test space, Sinv,
@@ -187,10 +189,17 @@ int main(int argc, char *argv[])
// 8. Set up the 1x2 block Least Squares DPG operator, B = [B0 Bhat],
// the normal equation operator, A = B^t Sinv B, and
// the normal equation right-hand-size, b = B^t Sinv F.
BlockOperator B(offsets_test, offsets);
// BlockOperator B(offsets_test, offsets);
BlockMatrix B(offsets_test, offsets);
B.SetBlock(0,0,&matB0);
B.SetBlock(0,1,&matBhat);
RAPOperator A(B, matSinv, B);
SparseMatrix * Bh = B.CreateMonolithic();
SparseMatrix * A = RAP(*Bh, matSinv, *Bh);
// RAPOperator A(B, matSinv, B);
{
Vector SinvF(s_test);
matSinv.Mult(F,SinvF);
@@ -234,7 +243,20 @@ int main(int argc, char *argv[])
// 10. Solve the normal equation system using the PCG iterative solver.
// Check the weighted norm of residual for the DPG least square problem.
// Wrap the primal variable in a GridFunction for visualization purposes.
PCG(A, P, b, x, 1, 200, 1e-12, 0.0);
// PCG(*A, P, b, x, 1, 200, 1e-12, 0.0);
GSSmoother M(*A);
CGSolver cg;
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(3);
cg.SetPreconditioner(M);
cg.SetOperator(*A);
cg.Mult(b, x);
{
Vector LSres(s_test);
+40 -4
View File
@@ -305,38 +305,66 @@ public:
/// Finalizes the matrix initialization.
virtual void Finalize(int skip_zeros = 1);
/// Returns a const reference to the sparse matrix.
/** @brief Returns a const reference to the sparse matrix: \f$ M \f$
This will fail if HasSpMat() is false. */
const SparseMatrix &SpMat() const
{
MFEM_VERIFY(mat, "mat is NULL and can't be dereferenced");
return *mat;
}
/// Returns a reference to the sparse matrix: \f$ M \f$
/** @brief Returns a reference to the sparse matrix: \f$ M \f$
This will fail if HasSpMat() is false. */
SparseMatrix &SpMat()
{
MFEM_VERIFY(mat, "mat is NULL and can't be dereferenced");
return *mat;
}
/** @brief Returns true if the sparse matrix is not null, false otherwise.
@sa SpMat(). */
bool HasSpMat()
{
return mat != nullptr;
}
/** @brief Nullifies the internal matrix \f$ M \f$ and returns a pointer
to it. Used for transfering ownership. */
SparseMatrix *LoseMat() { SparseMatrix *tmp = mat; mat = NULL; return tmp; }
/// Returns a const reference to the sparse matrix of eliminated b.c.: \f$ M_e \f$
/** @brief Returns a const reference to the sparse matrix of eliminated b.c.:
\f$ M_e \f$
This will fail if HasSpMatElim() is false. */
const SparseMatrix &SpMatElim() const
{
MFEM_VERIFY(mat_e, "mat_e is NULL and can't be dereferenced");
return *mat_e;
}
/// Returns a reference to the sparse matrix of eliminated b.c.: \f$ M_e \f$
/** @brief Returns a reference to the sparse matrix of eliminated b.c.:
\f$ M_e \f$
This will fail if HasSpMatElim() is false. */
SparseMatrix &SpMatElim()
{
MFEM_VERIFY(mat_e, "mat_e is NULL and can't be dereferenced");
return *mat_e;
}
/** @brief Returns true if the sparse matrix of eliminated b.c.s is not null,
false otherwise.
@sa SpMatElim(). */
bool HasSpMatElim()
{
return mat_e != nullptr;
}
/// Adds new Domain Integrator. Assumes ownership of @a bfi.
void AddDomainIntegrator(BilinearFormIntegrator *bfi);
/// Adds new Domain Integrator restricted to certain elements specified by
@@ -410,6 +438,14 @@ public:
virtual const Operator *GetOutputRestriction() const
{ return GetRestriction(); }
/// @brief Compute serial RAP operator and store it in @a A as a SparseMatrix.
void SerialRAP(OperatorHandle &A)
{
MFEM_ASSERT(mat, "SerialRAP requires the SparseMatrix to be assembled.");
ConformingAssemble();
A.Reset(mat, false);
}
/** @brief Form the linear system A X = B, corresponding to this bilinear
form and the linear form @a b(.). */
/** This method applies any necessary transformations to the linear system
+52
View File
@@ -251,6 +251,7 @@ PABilinearFormExtension::PABilinearFormExtension(BilinearForm *form)
void PABilinearFormExtension::SetupRestrictionOperators(const L2FaceValues m)
{
if ( Device::Allows(Backend::CEED_MASK) ) { return; }
ElementDofOrdering ordering = UsesTensorBasis(*a->FESpace())?
ElementDofOrdering::LEXICOGRAPHIC:
ElementDofOrdering::NATIVE;
@@ -956,6 +957,57 @@ void FABilinearFormExtension::Assemble()
}
}
void FABilinearFormExtension::RAP(OperatorHandle &A)
{
#ifdef MFEM_USE_MPI
if ( auto pa = dynamic_cast<ParBilinearForm*>(a) )
{
pa->ParallelRAP(*pa->mat, A);
}
else
#endif
{
a->SerialRAP(A);
}
}
void FABilinearFormExtension::EliminateBC(const Array<int> &ess_dofs,
OperatorHandle &A)
{
#ifdef MFEM_USE_MPI
if ( dynamic_cast<ParBilinearForm*>(a) )
{
A.As<HypreParMatrix>()->EliminateBC(ess_dofs,
DiagonalPolicy::DIAG_ONE);
}
else
#endif
{
A.As<SparseMatrix>()->EliminateBC(ess_dofs,
DiagonalPolicy::DIAG_ONE);
}
}
void FABilinearFormExtension::FormSystemMatrix(const Array<int> &ess_dofs,
OperatorHandle &A)
{
RAP(A);
EliminateBC(ess_dofs, A);
}
void FABilinearFormExtension::FormLinearSystem(const Array<int> &ess_tdof_list,
Vector &x, Vector &b,
OperatorHandle &A,
Vector &X, Vector &B,
int copy_interior)
{
Operator *A_out;
Operator::FormLinearSystem(ess_tdof_list, x, b, A_out, X, B, copy_interior);
delete A_out;
FormSystemMatrix(ess_tdof_list, A);
}
void FABilinearFormExtension::DGMult(const Vector &x, Vector &y) const
{
#ifdef MFEM_USE_MPI
+9
View File
@@ -125,6 +125,15 @@ public:
FABilinearFormExtension(BilinearForm *form);
void Assemble();
void RAP(OperatorHandle &A);
/** @note Always does `DIAG_ONE` policy to be consistent with
`Operator::FormConstrainedSystemOperator`. */
void EliminateBC(const Array<int> &ess_dofs, OperatorHandle &A);
void FormSystemMatrix(const Array<int> &ess_tdof_list, OperatorHandle &A);
void FormLinearSystem(const Array<int> &ess_tdof_list,
Vector &x, Vector &b,
OperatorHandle &A, Vector &X, Vector &B,
int copy_interior = 0);
void Mult(const Vector &x, Vector &y) const;
void MultTranspose(const Vector &x, Vector &y) const;
+423 -2
View File
@@ -144,6 +144,14 @@ void BilinearFormIntegrator::AssembleFaceMatrix (
" is not implemented for this class.");
}
void BilinearFormIntegrator::AssembleTraceFaceMatrix(int elem,
const FiniteElement &trial_face_fe, const FiniteElement &test_fe,
FaceElementTransformations &Trans, DenseMatrix &elmat)
{
mfem_error ("BilinearFormIntegrator::AssembleTraceFaceMatrix(...)\n"
" is not implemented for this class.");
}
void BilinearFormIntegrator::AssembleFaceMatrix(
const FiniteElement &trial_face_fe, const FiniteElement &test_fe1,
const FiniteElement &test_fe2, FaceElementTransformations &Trans,
@@ -793,6 +801,84 @@ const IntegrationRule &GradientIntegrator::GetRule(const FiniteElement
}
void CurlIntegrator::AssembleElementMatrix2(
const FiniteElement &trial_fe, const FiniteElement &test_fe,
ElementTransformation &Trans, DenseMatrix &elmat)
{
int dim = trial_fe.GetDim();
int trial_dof = trial_fe.GetDof();
int test_dof = test_fe.GetDof();
int dimc = (dim == 3) ? 3 : 1;
MFEM_ASSERT(trial_fe.GetMapType() == mfem::FiniteElement::H_CURL ||
dim == 2 && trial_fe.GetMapType() == mfem::FiniteElement::VALUE,
"Trial finite element must be either 2D/3D H(Curl) or 2D H1");
MFEM_ASSERT(test_fe.GetMapType() == mfem::FiniteElement::VALUE ||
test_fe.GetMapType() == mfem::FiniteElement::INTEGRAL,
"Test finite element must be in H1/L2");
bool spaceH1 = (trial_fe.GetMapType() == mfem::FiniteElement::VALUE);
if (spaceH1)
{
dshape.SetSize(trial_dof,dim);
curlshape.SetSize(dim*trial_dof,1);
dimc = dim;
}
else
{
curlshape.SetSize(trial_dof,dimc);
elmat_comp.SetSize(test_dof, trial_dof);
}
elmat.SetSize(dimc * test_dof, trial_dof);
shape.SetSize(test_dof);
elmat = 0.0;
double c;
Vector d_col;
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
int order = trial_fe.GetOrder() + test_fe.GetOrder() + Trans.OrderJ();
ir = &IntRules.Get(trial_fe.GetGeomType(), order);
}
for (int i = 0; i < ir->GetNPoints(); i++)
{
const IntegrationPoint &ip = ir->IntPoint(i);
Trans.SetIntPoint(&ip);
if (spaceH1)
{
trial_fe.CalcPhysDShape(Trans, dshape);
dshape.GradToCurl(curlshape);
}
else
{
trial_fe.CalcPhysCurlShape(Trans, curlshape);
}
test_fe.CalcPhysShape(Trans, shape);
c = ip.weight*Trans.Weight();
if (Q)
{
c *= Q->Eval(Trans, ip);
}
shape *= c;
for (int d = 0; d < dimc; ++d)
{
double * curldata = &(curlshape.GetData())[d*trial_dof];
for (int jj = 0; jj < trial_dof; ++jj)
{
for (int ii = 0; ii < test_dof; ++ii)
{
elmat(d * test_dof + ii, jj) += shape(ii) * curldata[jj];
}
}
}
}
}
void DiffusionIntegrator::AssembleElementMatrix
( const FiniteElement &el, ElementTransformation &Trans,
DenseMatrix &elmat )
@@ -2003,6 +2089,84 @@ void CurlCurlIntegrator::AssembleElementMatrix
}
}
void CurlCurlIntegrator::AssembleElementMatrix2(const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &Trans,
DenseMatrix &elmat)
{
int tr_nd = trial_fe.GetDof();
int te_nd = test_fe.GetDof();
dim = trial_fe.GetDim();
int dimc = trial_fe.GetCurlDim();
double w;
#ifdef MFEM_THREAD_SAFE
Vector D;
DenseMatrix curlshape(tr_nd,dimc), curlshape_dFt(tr_nd,dimc), M;
DenseMatrix te_curlshape(te_nd,dimc), te_curlshape_dFt(te_nd,dimc), M;
#else
curlshape.SetSize(tr_nd,dimc);
curlshape_dFt.SetSize(tr_nd,dimc);
te_curlshape.SetSize(te_nd,dimc);
te_curlshape_dFt.SetSize(te_nd,dimc);
#endif
elmat.SetSize(te_nd, tr_nd);
if (MQ) { M.SetSize(dimc); }
if (DQ) { D.SetSize(dimc); }
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
int order;
if (trial_fe.Space() == FunctionSpace::Pk)
{
order = test_fe.GetOrder() + trial_fe.GetOrder() - 2;
}
else
{
order = test_fe.GetOrder() + trial_fe.GetOrder() + trial_fe.GetDim() - 1;
}
ir = &IntRules.Get(trial_fe.GetGeomType(), order);
}
elmat = 0.0;
for (int i = 0; i < ir->GetNPoints(); i++)
{
const IntegrationPoint &ip = ir->IntPoint(i);
Trans.SetIntPoint(&ip);
w = ip.weight * Trans.Weight();
trial_fe.CalcPhysCurlShape(Trans, curlshape_dFt);
test_fe.CalcPhysCurlShape(Trans, te_curlshape_dFt);
if (MQ)
{
MQ->Eval(M, Trans, ip);
M *= w;
Mult(te_curlshape_dFt, M, te_curlshape);
AddMultABt(te_curlshape, curlshape_dFt, elmat);
}
else if (DQ)
{
DQ->Eval(D, Trans, ip);
D *= w;
AddMultADBt(te_curlshape_dFt,D,curlshape_dFt,elmat);
}
else
{
if (Q)
{
w *= Q->Eval(Trans, ip);
}
curlshape_dFt *= w;
AddMultABt(te_curlshape_dFt, curlshape_dFt, elmat);
}
}
}
void CurlCurlIntegrator
::ComputeElementFlux(const FiniteElement &el, ElementTransformation &Trans,
Vector &u, const FiniteElement &fluxelem, Vector &flux,
@@ -2586,6 +2750,55 @@ void DivDivIntegrator::AssembleElementMatrix(
}
}
void DivDivIntegrator::AssembleElementMatrix2(
const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &Trans,
DenseMatrix &elmat)
{
int tr_nd = trial_fe.GetDof();
int te_nd = test_fe.GetDof();
double c;
#ifdef MFEM_THREAD_SAFE
Vector divshape(tr_nd);
Vector te_divshape(te_nd);
#else
divshape.SetSize(tr_nd);
te_divshape.SetSize(te_nd);
#endif
elmat.SetSize(te_nd,tr_nd);
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
int order = 2 * max(test_fe.GetOrder(),
trial_fe.GetOrder()) - 2; // <--- OK for RTk
ir = &IntRules.Get(test_fe.GetGeomType(), order);
}
elmat = 0.0;
for (int i = 0; i < ir -> GetNPoints(); i++)
{
const IntegrationPoint &ip = ir->IntPoint(i);
trial_fe.CalcDivShape(ip,divshape);
test_fe.CalcDivShape(ip,te_divshape);
Trans.SetIntPoint (&ip);
c = ip.weight / Trans.Weight();
if (Q)
{
c *= Q -> Eval (Trans, ip);
}
te_divshape *= c;
AddMultVWt(te_divshape, divshape, elmat);
}
}
void VectorDiffusionIntegrator::AssembleElementMatrix(
const FiniteElement &el,
@@ -3780,7 +3993,7 @@ void NormalTraceJumpIntegrator::AssembleFaceMatrix(
for (i = 0; i < ndof1; i++)
for (j = 0; j < face_ndof; j++)
{
elmat(i, j) -= shape1_n(i) * face_shape(j);
elmat(i, j) += shape1_n(i) * face_shape(j);
}
if (ndof2)
{
@@ -3788,12 +4001,220 @@ void NormalTraceJumpIntegrator::AssembleFaceMatrix(
for (i = 0; i < ndof2; i++)
for (j = 0; j < face_ndof; j++)
{
elmat(ndof1+i, j) += shape2_n(i) * face_shape(j);
elmat(ndof1+i, j) -= shape2_n(i) * face_shape(j);
}
}
}
}
void TraceIntegrator::AssembleTraceFaceMatrix(int elem,
const FiniteElement &trial_face_fe,
const FiniteElement &test_fe,
FaceElementTransformations & Trans,
DenseMatrix &elmat)
{
int i, j, face_ndof, ndof;
int order;
face_ndof = trial_face_fe.GetDof();
ndof = test_fe.GetDof();
face_shape.SetSize(face_ndof);
shape.SetSize(ndof);
elmat.SetSize(ndof, face_ndof);
elmat = 0.0;
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
order = test_fe.GetOrder();
order += trial_face_fe.GetOrder();
if (trial_face_fe.GetMapType() == FiniteElement::VALUE)
{
order += Trans.OrderW();
}
ir = &IntRules.Get(Trans.GetGeometryType(), order);
}
int iel = Trans.Elem1->ElementNo;
if (iel != elem)
{
MFEM_VERIFY(elem == Trans.Elem2->ElementNo, "Elem != Trans.Elem2->ElementNo");
}
double scale = 1.0;
if (iel != elem) { scale = -1.; }
for (int p = 0; p < ir->GetNPoints(); p++)
{
const IntegrationPoint &ip = ir->IntPoint(p);
// Set the integration point in the face and the neighboring elements
Trans.SetAllIntPoints(&ip);
// Trace finite element shape function
trial_face_fe.CalcPhysShape(Trans,face_shape);
// Finite element shape function
ElementTransformation * eltrans = (iel == elem) ? Trans.Elem1 : Trans.Elem2;
test_fe.CalcPhysShape(*eltrans, shape);
face_shape *= Trans.Weight()*ip.weight;
for (i = 0; i < ndof; i++)
{
for (j = 0; j < face_ndof; j++)
{
elmat(i, j) += scale * shape(i) * face_shape(j);
}
}
}
}
void NormalTraceIntegrator::AssembleTraceFaceMatrix(int elem,
const FiniteElement &trial_face_fe,
const FiniteElement &test_fe,
FaceElementTransformations &Trans,
DenseMatrix &elmat)
{
int i, j, face_ndof, ndof, dim;
int order;
MFEM_VERIFY(trial_face_fe.GetMapType() == FiniteElement::VALUE, "");
face_ndof = trial_face_fe.GetDof();
ndof = test_fe.GetDof();
dim = test_fe.GetDim();
face_shape.SetSize(face_ndof);
normal.SetSize(dim);
shape.SetSize(ndof,dim);
shape_n.SetSize(ndof);
elmat.SetSize(ndof, face_ndof);
elmat = 0.0;
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
order = test_fe.GetOrder();
order += trial_face_fe.GetOrder();
ir = &IntRules.Get(Trans.GetGeometryType(), order);
}
int iel = Trans.Elem1->ElementNo;
if (iel != elem)
{
MFEM_VERIFY(elem == Trans.Elem2->ElementNo, "Elem != Trans.Elem2->ElementNo");
}
double scale = 1.0;
if (iel != elem) { scale = -1.; }
for (int p = 0; p < ir->GetNPoints(); p++)
{
const IntegrationPoint &ip = ir->IntPoint(p);
Trans.SetAllIntPoints(&ip);
trial_face_fe.CalcPhysShape(Trans, face_shape);
CalcOrtho(Trans.Jacobian(),normal);
ElementTransformation * etrans = (iel == elem) ? Trans.Elem1 : Trans.Elem2;
test_fe.CalcVShape(*etrans, shape);
shape.Mult(normal, shape_n);
face_shape *= ip.weight;
for (i = 0; i < ndof; i++)
{
for (j = 0; j < face_ndof; j++)
{
elmat(i, j) += scale * shape_n(i) * face_shape(j);
}
}
}
}
void TangentTraceIntegrator::AssembleTraceFaceMatrix(int elem,
const FiniteElement &trial_face_fe,
const FiniteElement &test_fe,
FaceElementTransformations & Trans,
DenseMatrix &elmat)
{
MFEM_VERIFY(test_fe.GetMapType() == FiniteElement::H_CURL, "");
int face_ndof, ndof, dim;
int order;
dim = test_fe.GetDim();
if (dim == 3)
{
std::string msg =
"Trial space should be ND face trace and test space should be a ND vector field in 3D ";
MFEM_VERIFY(trial_face_fe.GetMapType() == FiniteElement::H_CURL &&
trial_face_fe.GetDim() == 2 && test_fe.GetDim() == 3, msg);
}
else
{
std::string msg =
"Trial space should be H1 edge trace and test space should be a ND vector field in 2D";
MFEM_VERIFY(trial_face_fe.GetMapType() == FiniteElement::VALUE &&
trial_face_fe.GetDim() == 1 && test_fe.GetDim() == 2, msg);
}
face_ndof = trial_face_fe.GetDof();
ndof = test_fe.GetDof();
int dimc = (dim == 3) ? 3 : 1;
face_shape.SetSize(face_ndof,dimc);
shape_n.SetSize(ndof,dimc);
shape.SetSize(ndof,dim);
normal.SetSize(dim);
DenseMatrix face_shape_n(face_ndof,dimc);
elmat.SetSize(ndof, face_ndof);
elmat = 0.0;
const IntegrationRule *ir = IntRule;
if (ir == NULL)
{
order = test_fe.GetOrder();
order += trial_face_fe.GetOrder();
ir = &IntRules.Get(Trans.GetGeometryType(), order);
}
int iel = Trans.Elem1->ElementNo;
if (iel != elem)
{
MFEM_VERIFY(elem == Trans.Elem2->ElementNo, "Elem != Trans.Elem2->ElementNo");
}
double scale = 1.0;
if (iel != elem) { scale = -1.; }
for (int p = 0; p < ir->GetNPoints(); p++)
{
const IntegrationPoint &ip = ir->IntPoint(p);
// Set the integration point in the face and the neighboring elements
Trans.SetAllIntPoints(&ip);
// Trace finite element shape function
if (dim == 3)
{
trial_face_fe.CalcVShape(Trans,face_shape);
}
else
{
face_shape.GetColumnReference(0,temp);
trial_face_fe.CalcPhysShape(Trans,temp);
}
CalcOrtho(Trans.Jacobian(),normal);
ElementTransformation * eltrans = (iel == elem) ? Trans.Elem1 : Trans.Elem2;
test_fe.CalcVShape(*eltrans, shape);
// rotate
cross_product(normal, shape, shape_n);
const double w = scale*ip.weight;
AddMult_a_ABt(w,shape_n, face_shape, elmat);
}
}
void NormalInterpolator::AssembleElementMatrix2(
const FiniteElement &dom_fe, const FiniteElement &ran_fe,
+126 -2
View File
@@ -151,6 +151,12 @@ public:
FaceElementTransformations &Trans,
DenseMatrix &elmat);
virtual void AssembleTraceFaceMatrix(int elem,
const FiniteElement &trial_face_fe,
const FiniteElement &test_fe,
FaceElementTransformations &Trans,
DenseMatrix &elmat);
/** Abstract method used for assembling TraceFaceIntegrators in a
MixedBilinearForm. */
virtual void AssembleFaceMatrix(const FiniteElement &trial_face_fe,
@@ -2069,6 +2075,31 @@ public:
ElementTransformation &Trans);
};
/** Class for integrating the bilinear form a(u,v) := (Q curl u, v) where Q is a
scalar coefficient, and v is a vector with components v_i in the L2 or H1 space.
u can be in H(curl) (2D or 3D) or it can be a scalar H1.
Note: If u is scalar H1 then curl u = [0 1; -1 0] grad u */
class CurlIntegrator : public BilinearFormIntegrator
{
protected:
Coefficient *Q;
private:
Vector shape;
DenseMatrix dshape;
DenseMatrix curlshape;
DenseMatrix elmat_comp;
public:
CurlIntegrator() : Q{NULL} { }
CurlIntegrator(Coefficient *q_) : Q{q_} { }
CurlIntegrator(Coefficient &q) : Q{&q} { }
virtual void AssembleElementMatrix2(const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &Trans,
DenseMatrix &elmat);
};
/** Class for integrating the bilinear form a(u,v) := (Q grad u, grad v) where Q
can be a scalar or a matrix coefficient. */
class DiffusionIntegrator: public BilinearFormIntegrator
@@ -2524,6 +2555,7 @@ private:
#ifndef MFEM_THREAD_SAFE
Vector D;
DenseMatrix curlshape, curlshape_dFt, M;
DenseMatrix te_curlshape, te_curlshape_dFt;
DenseMatrix vshape, projcurl;
#endif
@@ -2557,6 +2589,11 @@ public:
ElementTransformation &Trans,
DenseMatrix &elmat);
virtual void AssembleElementMatrix2(const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &Trans,
DenseMatrix &elmat);
virtual void ComputeElementFlux(const FiniteElement &el,
ElementTransformation &Trans,
Vector &u, const FiniteElement &fluxelem,
@@ -2725,7 +2762,7 @@ protected:
private:
#ifndef MFEM_THREAD_SAFE
Vector divshape;
Vector divshape, te_divshape;
#endif
// PA extension
@@ -2737,11 +2774,16 @@ private:
public:
DivDivIntegrator() { Q = NULL; }
DivDivIntegrator(Coefficient &q) : Q(&q) { }
DivDivIntegrator(Coefficient &q, const IntegrationRule *ir = NULL) :
BilinearFormIntegrator(ir), Q(&q) { }
virtual void AssembleElementMatrix(const FiniteElement &el,
ElementTransformation &Trans,
DenseMatrix &elmat);
virtual void AssembleElementMatrix2(const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &Trans,
DenseMatrix &elmat);
const Coefficient *GetCoefficient() const { return Q; }
};
@@ -3258,6 +3300,88 @@ public:
DenseMatrix &elmat);
};
/** Integrator for the DPG form: < v, w > over a face (the interface) where
the trial variable v is defined on the interface
(H^-1/2 i.e., v:=un normal trace of H(div))
and the test variable w is in an H1-conforming space. */
class TraceIntegrator : public BilinearFormIntegrator
{
private:
Vector face_shape, shape;
public:
TraceIntegrator() { }
void AssembleTraceFaceMatrix(int elem,
const FiniteElement &trial_face_fe,
const FiniteElement &test_fe,
FaceElementTransformations &Trans,
DenseMatrix &elmat);
};
/** Integrator for the form: < v, w.n > over a face (the interface) where
the trial variable v is defined on the interface (H^1/2, i.e., trace of H1)
and the test variable w is in an H(div)-conforming space. */
class NormalTraceIntegrator : public BilinearFormIntegrator
{
private:
Vector face_shape, normal, shape_n;
DenseMatrix shape;
public:
NormalTraceIntegrator() { }
virtual void AssembleTraceFaceMatrix(int ielem,
const FiniteElement &trial_face_fe,
const FiniteElement &test_fe,
FaceElementTransformations &Trans,
DenseMatrix &elmat);
};
/** Integrator for the form: < v, w × n > over a face (the interface)
* In 3D the trial variable v is defined on the interface (H^-1/2(curl), trace of H(curl))
* In 2D it's defined on the interface (H^1/2, trace of H1)
* The test variable w is in an H(curl)-conforming space. */
class TangentTraceIntegrator : public BilinearFormIntegrator
{
private:
DenseMatrix face_shape, shape, shape_n;
Vector normal;
Vector temp;
void cross_product(const Vector & x, const DenseMatrix & Y, DenseMatrix & Z)
{
int dim = x.Size();
MFEM_VERIFY(Y.Width() == dim, "Size missmatch");
int dimc = dim == 3 ? dim : 1;
int h = Y.Height();
Z.SetSize(h,dimc);
if (dim == 3)
{
for (int i = 0; i<h; i++)
{
Z(i,0) = x(2) * Y(i,1) - x(1) * Y(i,2);
Z(i,1) = x(0) * Y(i,2) - x(2) * Y(i,0);
Z(i,2) = x(1) * Y(i,0) - x(0) * Y(i,1);
}
}
else
{
for (int i = 0; i<h; i++)
{
Z(i,0) = x(1) * Y(i,0) - x(0) * Y(i,1);
}
}
}
public:
TangentTraceIntegrator() { }
void AssembleTraceFaceMatrix(int elem,
const FiniteElement &trial_face_fe,
const FiniteElement &test_fe,
FaceElementTransformations &Trans,
DenseMatrix &elmat);
};
/** Abstract class to serve as a base for local interpolators to be used in the
DiscreteLinearOperator class. */
class DiscreteInterpolator : public BilinearFormIntegrator { };
+10 -1
View File
@@ -30,7 +30,16 @@ void ConvectionIntegrator::AssembleMF(const FiniteElementSpace &fes)
if (DeviceCanUseCeed())
{
delete ceedOp;
ceedOp = new ceed::MFConvectionIntegrator(fes, *ir, Q, alpha);
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
fes.IsVariableOrder();
if (mixed)
{
ceedOp = new ceed::MixedMFConvectionIntegrator(*this, fes, Q, alpha);
}
else
{
ceedOp = new ceed::MFConvectionIntegrator(fes, *ir, Q, alpha);
}
return;
}
MFEM_ABORT("Error: ConvectionIntegrator::AssembleMF only implemented with"
+12 -1
View File
@@ -1386,7 +1386,16 @@ void ConvectionIntegrator::AssemblePA(const FiniteElementSpace &fes)
if (DeviceCanUseCeed())
{
delete ceedOp;
ceedOp = new ceed::PAConvectionIntegrator(fes, *ir, Q, alpha);
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
fes.IsVariableOrder();
if (mixed)
{
ceedOp = new ceed::MixedPAConvectionIntegrator(*this, fes, Q, alpha);
}
else
{
ceedOp = new ceed::PAConvectionIntegrator(fes, *ir, Q, alpha);
}
return;
}
const int dims = el.GetDim();
@@ -1497,6 +1506,7 @@ static void PAConvectionApply(const int dim,
{
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return SmemPAConvectionApply3D<2,2>(NE,B,G,Bt,Gt,op,x,y);
case 0x23: return SmemPAConvectionApply3D<2,3>(NE,B,G,Bt,Gt,op,x,y);
case 0x24: return SmemPAConvectionApply3D<2,4>(NE,B,G,Bt,Gt,op,x,y);
case 0x26: return SmemPAConvectionApply3D<2,6>(NE,B,G,Bt,Gt,op,x,y);
@@ -1548,6 +1558,7 @@ static void PAConvectionApplyT(const int dim,
{
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return SmemPAConvectionApplyT3D<2,2>(NE,B,G,Bt,Gt,op,x,y);
case 0x23: return SmemPAConvectionApplyT3D<2,3>(NE,B,G,Bt,Gt,op,x,y);
case 0x24: return SmemPAConvectionApplyT3D<2,4>(NE,B,G,Bt,Gt,op,x,y);
case 0x26: return SmemPAConvectionApplyT3D<2,6>(NE,B,G,Bt,Gt,op,x,y);
+6 -1
View File
@@ -136,6 +136,9 @@ static void PADGTraceSetup(const int dim,
void DGTraceIntegrator::SetupPA(const FiniteElementSpace &fes, FaceType type)
{
const MemoryType mt = (pa_mt == MemoryType::DEFAULT) ?
Device::GetDeviceMemoryType() : pa_mt;
nf = fes.GetNFbyType(type);
if (nf==0) { return; }
// Assumes tensor-product elements
@@ -153,7 +156,7 @@ void DGTraceIntegrator::SetupPA(const FiniteElementSpace &fes, FaceType type)
geom = mesh->GetFaceGeometricFactors(
*ir,
FaceGeometricFactors::DETERMINANTS |
FaceGeometricFactors::NORMALS, type);
FaceGeometricFactors::NORMALS, type, mt);
maps = &el.GetDofToQuad(*ir, DofToQuad::TENSOR);
dofs1D = maps->ndof;
quad1D = maps->nqpt;
@@ -695,6 +698,7 @@ static void PADGTraceApply(const int dim,
{
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return SmemPADGTraceApply3D<2,2,1>(NF,B,Bt,op,x,y);
case 0x23: return SmemPADGTraceApply3D<2,3,1>(NF,B,Bt,op,x,y);
case 0x34: return SmemPADGTraceApply3D<3,4,2>(NF,B,Bt,op,x,y);
case 0x45: return SmemPADGTraceApply3D<4,5,2>(NF,B,Bt,op,x,y);
@@ -1124,6 +1128,7 @@ static void PADGTraceApplyTranspose(const int dim,
{
switch ((D1D << 4 ) | Q1D)
{
case 0x22: return SmemPADGTraceApplyTranspose3D<2,2>(NF,B,Bt,op,x,y);
case 0x23: return SmemPADGTraceApplyTranspose3D<2,3>(NF,B,Bt,op,x,y);
case 0x34: return SmemPADGTraceApplyTranspose3D<3,4>(NF,B,Bt,op,x,y);
case 0x45: return SmemPADGTraceApplyTranspose3D<4,5>(NF,B,Bt,op,x,y);
+10 -1
View File
@@ -33,7 +33,16 @@ void DiffusionIntegrator::AssembleMF(const FiniteElementSpace &fes)
MFEM_VERIFY(!VQ && !MQ,
"Only scalar coefficient supported for DiffusionIntegrator"
" with libCEED");
ceedOp = new ceed::MFDiffusionIntegrator(fes, *ir, Q);
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
fes.IsVariableOrder();
if (mixed)
{
ceedOp = new ceed::MixedMFDiffusionIntegrator(*this, fes, Q);
}
else
{
ceedOp = new ceed::MFDiffusionIntegrator(fes, *ir, Q);
}
return;
}
MFEM_ABORT("Error: DiffusionIntegrator::AssembleMF only implemented with"
+16 -4
View File
@@ -271,18 +271,21 @@ void PADiffusionSetup3D(const int Q1D,
D(qx,qy,qz,1,e) = D12; // 1,2
D(qx,qy,qz,2,e) = w_detJ * (A11*R13 + A12*R23 + A13*R33); // 1,3
const double D21 = w_detJ * (A21*R11 + A22*R21 + A23*R31);
const double D22 = w_detJ * (A21*R12 + A22*R22 + A23*R32);
const double D23 = w_detJ * (A21*R13 + A22*R23 + A23*R33);
const double D33 = w_detJ * (A31*R13 + A32*R23 + A33*R33);
D(qx,qy,qz,3,e) = symmetric ? D22 : D21; // 2,2 or 2,1
D(qx,qy,qz,4,e) = symmetric ? D23 : D22; // 2,3 or 2,2
D(qx,qy,qz,5,e) = symmetric ? D33 : D23; // 3,3 or 2,3
if (!symmetric)
if (symmetric)
{
D(qx,qy,qz,3,e) = D22; // 2,2
}
else
{
D(qx,qy,qz,3,e) = w_detJ * (A21*R11 + A22*R21 + A23*R31); // 2,1
D(qx,qy,qz,6,e) = w_detJ * (A31*R11 + A32*R21 + A33*R31); // 3,1
D(qx,qy,qz,7,e) = w_detJ * (A31*R12 + A32*R22 + A33*R32); // 3,2
D(qx,qy,qz,8,e) = D33; // 3,3
@@ -365,7 +368,16 @@ void DiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
MFEM_VERIFY(!VQ && !MQ,
"Only scalar coefficient supported for DiffusionIntegrator"
" with libCEED");
ceedOp = new ceed::PADiffusionIntegrator(fes, *ir, Q);
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
fes.IsVariableOrder();
if (mixed)
{
ceedOp = new ceed::MixedPADiffusionIntegrator(*this, fes, Q);
}
else
{
ceedOp = new ceed::PADiffusionIntegrator(fes, *ir, Q);
}
return;
}
const int dims = el.GetDim();
+626 -31
View File
@@ -24,18 +24,20 @@ namespace mfem
// PA H(div) Mass Assemble 2D kernel
void PAHdivSetup2D(const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &w,
const Vector &j,
Vector &coeff_,
Vector &op)
{
const bool symmetric = (coeffDim != 4);
const int NQ = Q1D*Q1D;
auto W = w.Read();
auto J = Reshape(j.Read(), NQ, 2, 2, NE);
auto coeff = Reshape(coeff_.Read(), NQ, NE);
auto y = Reshape(op.Write(), NQ, 3, NE);
auto C = Reshape(coeff_.Read(), coeffDim, NQ, NE);
auto y = Reshape(op.Write(), NQ, symmetric ? 3 : 4, NE);
MFEM_FORALL(e, NE,
{
@@ -45,28 +47,60 @@ void PAHdivSetup2D(const int Q1D,
const double J21 = J(q,1,0,e);
const double J12 = J(q,0,1,e);
const double J22 = J(q,1,1,e);
const double c_detJ = W[q] * coeff(q, e) / ((J11*J22)-(J21*J12));
// (c/detJ) J^T J
y(q,0,e) = c_detJ * (J11*J11 + J21*J21); // 1,1
y(q,1,e) = c_detJ * (J11*J12 + J21*J22); // 1,2
y(q,2,e) = c_detJ * (J12*J12 + J22*J22); // 2,2
const double c_detJ = W[q] / ((J11*J22)-(J21*J12));
// (1/detJ) J^T C J
if (coeffDim == 3 || coeffDim == 4) // Matrix coefficient
{
const double C11 = C(0,q,e);
const double C12 = C(1,q,e);
const double C21 = symmetric ? C12 : C(2,q,e);
const double C22 = symmetric ? C(2,q,e) : C(3,q,e);
const double R11 = C11*J11 + C12*J21;
const double R21 = C21*J11 + C22*J21;
const double R12 = C11*J12 + C12*J22;
const double R22 = C21*J12 + C22*J22;
y(q,0,e) = c_detJ * (J11*R11 + J21*R21); // 1,1
y(q,1,e) = c_detJ * (J11*R12 + J21*R22); // 1,2
if (symmetric)
{
y(q,2,e) = c_detJ * (J12*R12 + J22*R22); // 2,2
}
else
{
y(q,2,e) = c_detJ * (J12*R11 + J22*R21); // 2,1
y(q,3,e) = c_detJ * (J12*R12 + J22*R22); // 2,2
}
}
else // Vector or scalar coefficient
{
const double C1 = C(0,q,e);
const double C2 = (coeffDim == 2 ? C(1,q,e) : C1);
y(q,0,e) = c_detJ * (J11*C1*J11 + J21*C2*J21); // 1,1
y(q,1,e) = c_detJ * (J11*C1*J12 + J21*C2*J22); // 1,2
y(q,2,e) = c_detJ * (J12*C1*J12 + J22*C2*J22); // 2,2
}
}
});
}
// PA H(div) Mass Assemble 3D kernel
void PAHdivSetup3D(const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &w,
const Vector &j,
Vector &coeff_,
Vector &op)
{
const bool symmetric = (coeffDim != 9);
const int NQ = Q1D*Q1D*Q1D;
auto W = w.Read();
auto J = Reshape(j.Read(), NQ, 3, 3, NE);
auto coeff = Reshape(coeff_.Read(), NQ, NE);
auto y = Reshape(op.Write(), NQ, 6, NE);
auto C = Reshape(coeff_.Read(), coeffDim, NQ, NE);
auto y = Reshape(op.Write(), NQ, symmetric ? 6 : 9, NE);
MFEM_FORALL(e, NE,
{
@@ -84,14 +118,58 @@ void PAHdivSetup3D(const int Q1D,
const double detJ = J11 * (J22 * J33 - J32 * J23) -
/* */ J21 * (J12 * J33 - J32 * J13) +
/* */ J31 * (J12 * J23 - J22 * J13);
const double c_detJ = W[q] * coeff(q, e) / detJ;
// (c/detJ) J^T J
y(q,0,e) = c_detJ * (J11*J11 + J21*J21 + J31*J31); // 1,1
y(q,1,e) = c_detJ * (J12*J11 + J22*J21 + J32*J31); // 2,1
y(q,2,e) = c_detJ * (J13*J11 + J23*J21 + J33*J31); // 3,1
y(q,3,e) = c_detJ * (J12*J12 + J22*J22 + J32*J32); // 2,2
y(q,4,e) = c_detJ * (J13*J12 + J23*J22 + J33*J32); // 3,2
y(q,5,e) = c_detJ * (J13*J13 + J23*J23 + J33*J33); // 3,3
const double c_detJ = W[q] / detJ;
// (1/detJ) J^T C J
if (coeffDim == 6 || coeffDim == 9) // Matrix coefficient version
{
double M[3][3];
M[0][0] = C(0, q, e);
M[0][1] = C(1, q, e);
M[0][2] = C(2, q, e);
M[1][0] = (!symmetric) ? C(3, q, e) : M[0][1];
M[1][1] = (!symmetric) ? C(4, q, e) : C(3, q, e);
M[1][2] = (!symmetric) ? C(5, q, e) : C(4, q, e);
M[2][0] = (!symmetric) ? C(6, q, e) : M[0][2];
M[2][1] = (!symmetric) ? C(7, q, e) : M[1][2];
M[2][2] = (!symmetric) ? C(8, q, e) : C(5, q, e);
int idx = 0;
for (int i=0; i<3; ++i)
for (int j = (symmetric ? i : 0); j<3; ++j)
{
y(q,idx,e) = 0.0;
for (int k=0; k<3; ++k)
{
double MJ_kj = 0.0;
for (int l=0; l<3; ++l)
{
MJ_kj += M[k][l] * J(q,l,j,e);
}
y(q,idx,e) += J(q,k,i,e) * MJ_kj;
}
y(q,idx,e) *= c_detJ;
idx++;
}
}
else // Vector or scalar coefficient version
{
int idx = 0;
for (int i=0; i<3; ++i)
for (int j=i; j<3; ++j)
{
y(q,idx,e) = 0.0;
for (int k=0; k<3; ++k)
{
y(q,idx,e) += J(q,k,i,e) * C(coeffDim == 3 ? k : 0, q, e) * J(q,k,j,e);
}
y(q,idx,e) *= c_detJ;
idx++;
}
}
}
});
}
@@ -99,6 +177,7 @@ void PAHdivSetup3D(const int Q1D,
void PAHdivMassApply2D(const int D1D,
const int Q1D,
const int NE,
const bool symmetric,
const Array<double> &Bo_,
const Array<double> &Bc_,
const Array<double> &Bot_,
@@ -115,7 +194,7 @@ void PAHdivMassApply2D(const int D1D,
auto Bc = Reshape(Bc_.Read(), Q1D, D1D);
auto Bot = Reshape(Bot_.Read(), D1D-1, Q1D);
auto Bct = Reshape(Bct_.Read(), D1D, Q1D);
auto op = Reshape(op_.Read(), Q1D, Q1D, 3, NE);
auto op = Reshape(op_.Read(), Q1D, Q1D, symmetric ? 3 : 4, NE);
auto x = Reshape(x_.Read(), 2*(D1D-1)*D1D, NE);
auto y = Reshape(y_.ReadWrite(), 2*(D1D-1)*D1D, NE);
@@ -178,11 +257,12 @@ void PAHdivMassApply2D(const int D1D,
{
const double O11 = op(qx,qy,0,e);
const double O12 = op(qx,qy,1,e);
const double O22 = op(qx,qy,2,e);
const double O21 = symmetric ? O12 : op(qx,qy,2,e);
const double O22 = symmetric ? op(qx,qy,2,e) : op(qx,qy,3,e);
const double massX = mass[qy][qx][0];
const double massY = mass[qy][qx][1];
mass[qy][qx][0] = (O11*massX)+(O12*massY);
mass[qy][qx][1] = (O12*massX)+(O22*massY);
mass[qy][qx][1] = (O21*massX)+(O22*massY);
}
}
@@ -225,9 +305,179 @@ void PAHdivMassApply2D(const int D1D,
}); // end of element loop
}
template<int T_D1D = 0, int T_Q1D = 0>
void SmemPAHdivMassApply2D(const int NE,
const bool symmetric,
const Array<double> &Bo_,
const Array<double> &Bc_,
const Array<double> &Bot_,
const Array<double> &Bct_,
const Vector &op_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
MFEM_CONTRACT_VAR(Bot_);
MFEM_CONTRACT_VAR(Bct_);
static constexpr int VDIM = 2;
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
const auto bo = Reshape(Bo_.Read(), Q1D, D1D-1);
const auto bc = Reshape(Bc_.Read(), Q1D, D1D);
const auto D = Reshape(op_.Read(), Q1D, Q1D, symmetric ? 3 : 4, NE);
const auto x = Reshape(x_.Read(), D1D*(D1D-1), VDIM, NE);
auto y = y_.ReadWrite();
MFEM_FORALL_3D(e, NE, Q1D, Q1D, VDIM,
{
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MQ1 = T_Q1D ? T_Q1D : HDIV_MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : HDIV_MAX_D1D;
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
MFEM_SHARED double smo[MQ1*(MD1-1)];
DeviceMatrix Bo(smo, D1D-1, Q1D);
MFEM_SHARED double smc[MQ1*MD1];
DeviceMatrix Bc(smc, D1D, Q1D);
MFEM_SHARED double sm0[VDIM*MDQ*MDQ];
MFEM_SHARED double sm1[VDIM*MDQ*MDQ];
DeviceMatrix X(sm0, D1D*(D1D-1), VDIM);
DeviceCube QD(sm1, Q1D, D1D, VDIM);
DeviceCube QQ(sm0, Q1D, Q1D, VDIM);
// Load X, Bo and Bc into shared memory
MFEM_FOREACH_THREAD(vd,z,VDIM)
{
MFEM_FOREACH_THREAD(dy,y,D1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
if (qx < D1D && dy < (D1D-1)) { X(qx + dy*D1D,vd) = x(qx+dy*D1D,vd,e); }
if (tidz == 0)
{
if (dy < (D1D-1)) { Bo(dy,qx) = bo(qx,dy); }
Bc(dy,qx) = bc(qx,dy);
}
}
}
}
MFEM_SYNC_THREAD;
// Apply B operator
MFEM_FOREACH_THREAD(vd,z,VDIM)
{
const int nx = (vd == 0) ? D1D : D1D-1;
const int ny = (vd == 1) ? D1D : D1D-1;
DeviceCube Xxy(X, nx, ny, VDIM);
DeviceMatrix Bx = (vd == 0) ? Bc : Bo;
MFEM_FOREACH_THREAD(dy,y,ny)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double dq = 0.0;
for (int dx = 0; dx < nx; ++dx)
{
dq += Xxy(dx,dy,vd) * Bx(dx,qx);
}
QD(qx,dy,vd) = dq;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(vd,z,VDIM)
{
const int ny = (vd == 1) ? D1D : D1D-1;
DeviceMatrix By = (vd == 1) ? Bc : Bo;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double qq = 0.0;
for (int dy = 0; dy < ny; ++dy)
{
qq += QD(qx,dy,vd) * By(dy,qy);
}
QQ(qx,qy,vd) = qq;
}
}
}
MFEM_SYNC_THREAD;
// Apply D operator
if (tidz == 0)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
const double Qx = QQ(qx,qy,0);
const double Qy = QQ(qx,qy,1);
const double D11 = D(qx,qy,0,e);
const double D12 = D(qx,qy,1,e);
const double D21 = symmetric ? D12 : D(qx,qy,2,e);
const double D22 = symmetric ? D(qx,qy,2,e) : D(qx,qy,3,e);
QQ(qx,qy,0) = D11*Qx + D12*Qy;
QQ(qx,qy,1) = D21*Qx + D22*Qy;
}
}
}
MFEM_SYNC_THREAD;
// Apply Bt operator
MFEM_FOREACH_THREAD(vd,z,VDIM)
{
const int nx = (vd == 0) ? D1D : D1D-1;
DeviceMatrix Btx = (vd == 0) ? Bc : Bo;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,nx)
{
double qd = 0.0;
for (int qx = 0; qx < Q1D; ++qx)
{
qd += QQ(qx,qy,vd) * Btx(dx,qx);
}
QD(dx,qy,vd) = qd;
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(vd,z,VDIM)
{
const int nx = (vd == 0) ? D1D : D1D-1;
const int ny = (vd == 1) ? D1D : D1D-1;
DeviceMatrix Bty = (vd == 1) ? Bc : Bo;
DeviceTensor<4> Yxy(y, nx, ny, VDIM, NE);
MFEM_FOREACH_THREAD(dy,y,ny)
{
MFEM_FOREACH_THREAD(dx,x,nx)
{
double dd = 0.0;
for (int qy = 0; qy < Q1D; ++qy)
{
dd += QD(dx,qy,vd) * Bty(dy,qy);
}
Yxy(dx,dy,vd,e) += dd;
}
}
}
MFEM_SYNC_THREAD;
});
}
void PAHdivMassAssembleDiagonal2D(const int D1D,
const int Q1D,
const int NE,
const bool symmetric,
const Array<double> &Bo_,
const Array<double> &Bc_,
const Vector &op_,
@@ -238,7 +488,7 @@ void PAHdivMassAssembleDiagonal2D(const int D1D,
auto Bo = Reshape(Bo_.Read(), Q1D, D1D-1);
auto Bc = Reshape(Bc_.Read(), Q1D, D1D);
auto op = Reshape(op_.Read(), Q1D, Q1D, 3, NE);
auto op = Reshape(op_.Read(), Q1D, Q1D, symmetric ? 3 : 4, NE);
auto diag = Reshape(diag_.ReadWrite(), 2*(D1D-1)*D1D, NE);
MFEM_FORALL(e, NE,
@@ -259,7 +509,7 @@ void PAHdivMassAssembleDiagonal2D(const int D1D,
for (int qy = 0; qy < Q1D; ++qy)
{
const double wy = (c == 1) ? Bc(qy,dy) : Bo(qy,dy);
mass[qx] += wy*wy*((c == 0) ? op(qx,qy,0,e) : op(qx,qy,2,e));
mass[qx] += wy*wy*((c == 0) ? op(qx,qy,0,e) : op(qx,qy,symmetric ? 2 : 3,e));
}
}
@@ -283,6 +533,7 @@ void PAHdivMassAssembleDiagonal2D(const int D1D,
void PAHdivMassAssembleDiagonal3D(const int D1D,
const int Q1D,
const int NE,
const bool symmetric,
const Array<double> &Bo_,
const Array<double> &Bc_,
const Vector &op_,
@@ -294,7 +545,7 @@ void PAHdivMassAssembleDiagonal3D(const int D1D,
auto Bo = Reshape(Bo_.Read(), Q1D, D1D-1);
auto Bc = Reshape(Bc_.Read(), Q1D, D1D);
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, 6, NE);
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
auto diag = Reshape(diag_.ReadWrite(), 3*(D1D-1)*(D1D-1)*D1D, NE);
MFEM_FORALL(e, NE,
@@ -307,7 +558,8 @@ void PAHdivMassAssembleDiagonal3D(const int D1D,
const int D1Dy = (c == 1) ? D1D : D1D - 1;
const int D1Dx = (c == 0) ? D1D : D1D - 1;
const int opc = (c == 0) ? 0 : ((c == 1) ? 3 : 5);
const int opc = (c == 0) ? 0 : ((c == 1) ? (symmetric ? 3 : 4) :
(symmetric ? 5 : 8));
double mass[HDIV_MAX_Q1D];
@@ -350,6 +602,7 @@ void PAHdivMassAssembleDiagonal3D(const int D1D,
void PAHdivMassApply3D(const int D1D,
const int Q1D,
const int NE,
const bool symmetric,
const Array<double> &Bo_,
const Array<double> &Bc_,
const Array<double> &Bot_,
@@ -366,7 +619,7 @@ void PAHdivMassApply3D(const int D1D,
auto Bc = Reshape(Bc_.Read(), Q1D, D1D);
auto Bot = Reshape(Bot_.Read(), D1D-1, Q1D);
auto Bct = Reshape(Bct_.Read(), D1D, Q1D);
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, 6, NE);
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
auto x = Reshape(x_.Read(), 3*(D1D-1)*(D1D-1)*D1D, NE);
auto y = Reshape(y_.ReadWrite(), 3*(D1D-1)*(D1D-1)*D1D, NE);
@@ -461,15 +714,19 @@ void PAHdivMassApply3D(const int D1D,
const double O11 = op(qx,qy,qz,0,e);
const double O12 = op(qx,qy,qz,1,e);
const double O13 = op(qx,qy,qz,2,e);
const double O22 = op(qx,qy,qz,3,e);
const double O23 = op(qx,qy,qz,4,e);
const double O33 = op(qx,qy,qz,5,e);
const double O21 = symmetric ? O12 : op(qx,qy,qz,3,e);
const double O22 = symmetric ? op(qx,qy,qz,3,e) : op(qx,qy,qz,4,e);
const double O23 = symmetric ? op(qx,qy,qz,4,e) : op(qx,qy,qz,5,e);
const double O31 = symmetric ? O13 : op(qx,qy,qz,6,e);
const double O32 = symmetric ? O23 : op(qx,qy,qz,7,e);
const double O33 = symmetric ? op(qx,qy,qz,5,e) : op(qx,qy,qz,8,e);
const double massX = mass[qz][qy][qx][0];
const double massY = mass[qz][qy][qx][1];
const double massZ = mass[qz][qy][qx][2];
mass[qz][qy][qx][0] = (O11*massX)+(O12*massY)+(O13*massZ);
mass[qz][qy][qx][1] = (O12*massX)+(O22*massY)+(O23*massZ);
mass[qz][qy][qx][2] = (O13*massX)+(O23*massY)+(O33*massZ);
mass[qz][qy][qx][1] = (O21*massX)+(O22*massY)+(O23*massZ);
mass[qz][qy][qx][2] = (O31*massX)+(O32*massY)+(O33*massZ);
}
}
}
@@ -537,6 +794,337 @@ void PAHdivMassApply3D(const int D1D,
}); // end of element loop
}
template<int T_D1D = 0, int T_Q1D = 0>
void SmemPAHdivMassApply3D(const int NE,
const bool symmetric,
const Array<double> &Bo_,
const Array<double> &Bc_,
const Array<double> &Bot_,
const Array<double> &Bct_,
const Vector &op_,
const Vector &x_,
Vector &y_,
const int d1d = 0,
const int q1d = 0)
{
MFEM_CONTRACT_VAR(Bot_);
MFEM_CONTRACT_VAR(Bct_);
static constexpr int VDIM = 3;
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
const auto bo = Reshape(Bo_.Read(), Q1D, D1D-1);
const auto bc = Reshape(Bc_.Read(), Q1D, D1D);
const auto D = Reshape(op_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
const auto x = Reshape(x_.Read(), D1D*(D1D-1)*(D1D-1), VDIM, NE);
auto y = y_.ReadWrite();
MFEM_FORALL_3D(e, NE, Q1D, Q1D, VDIM,
{
const int tidz = MFEM_THREAD_ID(z);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
constexpr int MQ1 = T_Q1D ? T_Q1D : HDIV_MAX_Q1D;
constexpr int MD1 = T_D1D ? T_D1D : HDIV_MAX_D1D;
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
MFEM_SHARED double smo[MQ1*(MD1-1)];
DeviceMatrix Bo(smo, D1D-1, Q1D);
MFEM_SHARED double smc[MQ1*MD1];
DeviceMatrix Bc(smc, D1D, Q1D);
MFEM_SHARED double sm0[VDIM*MDQ*MDQ*MDQ];
MFEM_SHARED double sm1[VDIM*MDQ*MDQ*MDQ];
DeviceMatrix X(sm0, D1D*(D1D-1)*(D1D-1), VDIM);
DeviceTensor<4> QDD(sm1, Q1D, D1D, D1D, VDIM);
DeviceTensor<4> QQD(sm0, Q1D, Q1D, D1D, VDIM);
DeviceTensor<4> QQQ(sm1, Q1D, Q1D, Q1D, VDIM);
DeviceTensor<4> DQQ(sm0, D1D, Q1D, Q1D, VDIM);
DeviceTensor<4> DDQ(sm1, D1D, D1D, Q1D, VDIM);
// Load X into shared memory
MFEM_FOREACH_THREAD(vd,z,VDIM)
{
MFEM_FOREACH_THREAD(dz,y,D1D-1)
{
MFEM_FOREACH_THREAD(dy,x,D1D-1)
{
MFEM_UNROLL(MD1)
for (int dx = 0; dx < D1D; ++dx)
{
X(dx+(dy+dz*(D1D-1))*D1D,vd) = x(dx+(dy+dz*(D1D-1))*D1D,vd,e);
}
}
}
}
// Load Bo and Bc into shared memory
if (tidz == 0)
{
MFEM_FOREACH_THREAD(d,y,D1D-1)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
Bo(d,q) = bo(q,d);
}
}
MFEM_FOREACH_THREAD(d,y,D1D)
{
MFEM_FOREACH_THREAD(q,x,Q1D)
{
Bc(d,q) = bc(q,d);
}
}
}
MFEM_SYNC_THREAD;
// Apply B operator
MFEM_FOREACH_THREAD(vd,z,VDIM)
{
const int nx = (vd == 0) ? D1D : D1D-1;
const int ny = (vd == 1) ? D1D : D1D-1;
const int nz = (vd == 2) ? D1D : D1D-1;
DeviceTensor<4> Xxyz(X, nx, ny, nz, VDIM);
DeviceMatrix Bx = (vd == 0) ? Bc : Bo;
MFEM_FOREACH_THREAD(dy,y,ny)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < nz; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(MD1)
for (int dx = 0; dx < nx; ++dx)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < nz; ++dz)
{
u[dz] += Xxyz(dx,dy,dz,vd) * Bx(dx,qx);
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < nz; ++dz) { QDD(qx,dy,dz,vd) = u[dz]; }
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(vd,z,VDIM)
{
const int ny = (vd == 1) ? D1D : D1D-1;
const int nz = (vd == 2) ? D1D : D1D-1;
DeviceMatrix By = (vd == 1) ? Bc : Bo;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < nz; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(MD1)
for (int dy = 0; dy < ny; ++dy)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < nz; ++dz)
{
u[dz] += QDD(qx,dy,dz,vd) * By(dy,qy);
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < nz; ++dz) { QQD(qx,qy,dz,vd) = u[dz]; }
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(vd,z,VDIM)
{
const int nz = (vd == 2) ? D1D : D1D-1;
DeviceMatrix Bz = (vd == 2) ? Bc : Bo;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
double u[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = 0.0; }
MFEM_UNROLL(MD1)
for (int dz = 0; dz < nz; ++dz)
{
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQD(qx,qy,dz,vd) * Bz(dz,qz);
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz) { QQQ(qx,qy,qz,vd) = u[qz]; }
}
}
}
MFEM_SYNC_THREAD;
// Apply D operator
if (tidz == 0)
{
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(qx,x,Q1D)
{
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
const double Qx = QQQ(qx,qy,qz,0);
const double Qy = QQQ(qx,qy,qz,1);
const double Qz = QQQ(qx,qy,qz,2);
const double D11 = D(qx,qy,qz,0,e);
const double D12 = D(qx,qy,qz,1,e);
const double D13 = D(qx,qy,qz,2,e);
const double D21 = symmetric ? D12 : D(qx,qy,qz,3,e);
const double D22 = symmetric ? D(qx,qy,qz,3,e) : D(qx,qy,qz,4,e);
const double D23 = symmetric ? D(qx,qy,qz,4,e) : D(qx,qy,qz,5,e);
const double D31 = symmetric ? D13 : D(qx,qy,qz,6,e);
const double D32 = symmetric ? D23 : D(qx,qy,qz,7,e);
const double D33 = symmetric ? D(qx,qy,qz,5,e) : D(qx,qy,qz,8,e);
QQQ(qx,qy,qz,0) = D11*Qx + D12*Qy + D13*Qz;
QQQ(qx,qy,qz,1) = D21*Qx + D22*Qy + D23*Qz;
QQQ(qx,qy,qz,2) = D31*Qx + D32*Qy + D33*Qz;
}
}
}
}
MFEM_SYNC_THREAD;
// Apply Bt operator
MFEM_FOREACH_THREAD(vd,z,VDIM)
{
const int nx = (vd == 0) ? D1D : D1D-1;
DeviceMatrix Btx = (vd == 0) ? Bc : Bo;
MFEM_FOREACH_THREAD(qy,y,Q1D)
{
MFEM_FOREACH_THREAD(dx,x,nx)
{
double u[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = 0.0; }
MFEM_UNROLL(MQ1)
for (int qx = 0; qx < Q1D; ++qx)
{
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += QQQ(qx,qy,qz,vd) * Btx(dx,qx);
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz) { DQQ(dx,qy,qz,vd) = u[qz]; }
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(vd,z,VDIM)
{
const int nx = (vd == 0) ? D1D : D1D-1;
const int ny = (vd == 1) ? D1D : D1D-1;
DeviceMatrix Bty = (vd == 1) ? Bc : Bo;
MFEM_FOREACH_THREAD(dy,y,ny)
{
MFEM_FOREACH_THREAD(dx,x,nx)
{
double u[Q1D];
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz) { u[qz] = 0.0; }
MFEM_UNROLL(MQ1)
for (int qy = 0; qy < Q1D; ++qy)
{
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
u[qz] += DQQ(dx,qy,qz,vd) * Bty(dy,qy);
}
}
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz) { DDQ(dx,dy,qz,vd) = u[qz]; }
}
}
}
MFEM_SYNC_THREAD;
MFEM_FOREACH_THREAD(vd,z,VDIM)
{
const int nx = (vd == 0) ? D1D : D1D-1;
const int ny = (vd == 1) ? D1D : D1D-1;
const int nz = (vd == 2) ? D1D : D1D-1;
DeviceTensor<5> Yxyz(y, nx, ny, nz, VDIM, NE);
DeviceMatrix Btz = (vd == 2) ? Bc : Bo;
MFEM_FOREACH_THREAD(dy,y,ny)
{
MFEM_FOREACH_THREAD(dx,x,nx)
{
double u[D1D];
MFEM_UNROLL(MD1)
for (int dz = 0; dz < nz; ++dz) { u[dz] = 0.0; }
MFEM_UNROLL(MQ1)
for (int qz = 0; qz < Q1D; ++qz)
{
MFEM_UNROLL(MD1)
for (int dz = 0; dz < nz; ++dz)
{
u[dz] += DDQ(dx,dy,qz,vd) * Btz(dz,qz);
}
}
MFEM_UNROLL(MD1)
for (int dz = 0; dz < nz; ++dz) { Yxyz(dx,dy,dz,vd,e) += u[dz]; }
}
}
}
MFEM_SYNC_THREAD;
});
}
void PAHdivMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const bool symmetric,
const Array<double> &Bo,
const Array<double> &Bc,
const Array<double> &Bot,
const Array<double> &Bct,
const Vector &op,
const Vector &x,
Vector &y)
{
const int id = (D1D << 4) | Q1D;
if (dim == 2)
{
switch (id)
{
case 0x22: return SmemPAHdivMassApply2D<2,2>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
case 0x33: return SmemPAHdivMassApply2D<3,3>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
case 0x44: return SmemPAHdivMassApply2D<4,4>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
case 0x55: return SmemPAHdivMassApply2D<5,5>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
default: // fallback
return PAHdivMassApply2D(D1D,Q1D,NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
}
}
else if (dim == 3)
{
switch (id)
{
case 0x23: return SmemPAHdivMassApply3D<2,3>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
case 0x34: return SmemPAHdivMassApply3D<3,4>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
case 0x45: return SmemPAHdivMassApply3D<4,5>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
case 0x56: return SmemPAHdivMassApply3D<5,6>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
case 0x67: return SmemPAHdivMassApply3D<6,7>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
case 0x78: return SmemPAHdivMassApply3D<7,8>(NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
default: // fallback
return PAHdivMassApply3D(D1D,Q1D,NE,symmetric,Bo,Bc,Bot,Bct,op,x,y);
}
}
}
// PA H(div) div-div assemble 2D kernel
// NOTE: this is identical to PACurlCurlSetup3D
static void PADivDivSetup2D(const int Q1D,
@@ -626,7 +1214,7 @@ static void PADivDivApply2D(const int D1D,
{
double div[MAX_Q1D][MAX_Q1D];
// div[qy][qx] will be computed as du_x/dx + duy_/dy
// div[qy][qx] will be computed as du_x/dx + du_y/dy
for (int qy = 0; qy < Q1D; ++qy)
{
@@ -1209,6 +1797,13 @@ VectorFEDivergenceIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
}
}
if (test_el->GetMapType() == FiniteElement::INTEGRAL)
{
const GeometricFactors *geom =
mesh->GetGeometricFactors(*ir, GeometricFactors::DETERMINANTS);
coeff /= geom->detJ;
}
if (trial_el->GetDerivType() == mfem::FiniteElement::DIV && dim == 3)
{
PADivL2Setup3D(quad1D, ne, ir->GetWeights(), coeff, pa_data);
+10 -1
View File
@@ -31,7 +31,16 @@ void MassIntegrator::AssembleMF(const FiniteElementSpace &fes)
if (DeviceCanUseCeed())
{
delete ceedOp;
ceedOp = new ceed::MFMassIntegrator(fes, *ir, Q);
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
fes.IsVariableOrder();
if (mixed)
{
ceedOp = new ceed::MixedMFMassIntegrator(*this, fes, Q);
}
else
{
ceedOp = new ceed::MFMassIntegrator(fes, *ir, Q);
}
return;
}
MFEM_ABORT("Error: MassIntegrator::AssembleMF only implemented with"
+10 -1
View File
@@ -38,7 +38,16 @@ void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
if (DeviceCanUseCeed())
{
delete ceedOp;
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q);
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
fes.IsVariableOrder();
if (mixed)
{
ceedOp = new ceed::MixedPAMassIntegrator(*this, fes, Q);
}
else
{
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q);
}
return;
}
int map_type = el.GetMapType();
+10 -1
View File
@@ -149,7 +149,16 @@ void VectorDiffusionIntegrator::AssemblePA(const FiniteElementSpace &fes)
if (DeviceCanUseCeed())
{
delete ceedOp;
ceedOp = new ceed::PADiffusionIntegrator(fes, *ir, Q);
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
fes.IsVariableOrder();
if (mixed)
{
ceedOp = new ceed::MixedPADiffusionIntegrator(*this, fes, Q);
}
else
{
ceedOp = new ceed::PADiffusionIntegrator(fes, *ir, Q);
}
return;
}
const int dims = el.GetDim();
+13 -1
View File
@@ -30,7 +30,19 @@ void VectorDiffusionIntegrator::AssembleMF(const FiniteElementSpace &fes)
if (DeviceCanUseCeed())
{
delete ceedOp;
ceedOp = new ceed::MFDiffusionIntegrator(fes, *ir, Q);
MFEM_VERIFY(!VQ && !MQ,
"Only scalar coefficient supported for DiffusionIntegrator"
" with libCEED");
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
fes.IsVariableOrder();
if (mixed)
{
ceedOp = new ceed::MixedMFDiffusionIntegrator(*this, fes, Q);
}
else
{
ceedOp = new ceed::MFDiffusionIntegrator(fes, *ir, Q);
}
return;
}
MFEM_ABORT("Error: VectorDiffusionIntegrator::AssembleMF only implemented"
+10 -1
View File
@@ -34,7 +34,16 @@ void VectorMassIntegrator::AssemblePA(const FiniteElementSpace &fes)
if (DeviceCanUseCeed())
{
delete ceedOp;
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q);
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
fes.IsVariableOrder();
if (mixed)
{
ceedOp = new ceed::MixedPAMassIntegrator(*this, fes, Q);
}
else
{
ceedOp = new ceed::PAMassIntegrator(fes, *ir, Q);
}
return;
}
dim = mesh->Dimension();
+10 -1
View File
@@ -34,7 +34,16 @@ void VectorMassIntegrator::AssembleMF(const FiniteElementSpace &fes)
if (DeviceCanUseCeed())
{
delete ceedOp;
ceedOp = new ceed::MFMassIntegrator(fes, *ir, Q);
const bool mixed = mesh->GetNumGeometries(mesh->Dimension()) > 1 ||
fes.IsVariableOrder();
if (mixed)
{
ceedOp = new ceed::MixedMFMassIntegrator(*this, fes, Q);
}
else
{
ceedOp = new ceed::MFMassIntegrator(fes, *ir, Q);
}
return;
}
MFEM_ABORT("Error: VectorMassIntegrator::AssembleMF only implemented with"
+98 -86
View File
@@ -11,6 +11,7 @@
#include "../general/forall.hpp"
#include "bilininteg.hpp"
#include "gridfunc.hpp"
namespace mfem
{
@@ -89,6 +90,7 @@ void SmemPAHcurlMassApply3D(const int D1D,
Vector &y);
void PAHdivSetup2D(const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &w,
const Vector &j,
@@ -96,6 +98,7 @@ void PAHdivSetup2D(const int Q1D,
Vector &op);
void PAHdivSetup3D(const int Q1D,
const int coeffDim,
const int NE,
const Array<double> &w,
const Vector &j,
@@ -149,6 +152,7 @@ void PAHcurlH1ApplyTranspose3D(const int D1D,
void PAHdivMassAssembleDiagonal2D(const int D1D,
const int Q1D,
const int NE,
const bool symmetric,
const Array<double> &Bo_,
const Array<double> &Bc_,
const Vector &op_,
@@ -157,32 +161,24 @@ void PAHdivMassAssembleDiagonal2D(const int D1D,
void PAHdivMassAssembleDiagonal3D(const int D1D,
const int Q1D,
const int NE,
const bool symmetric,
const Array<double> &Bo_,
const Array<double> &Bc_,
const Vector &op_,
Vector &diag_);
void PAHdivMassApply2D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Bc_,
const Array<double> &Bot_,
const Array<double> &Bct_,
const Vector &op_,
const Vector &x_,
Vector &y_);
void PAHdivMassApply3D(const int D1D,
const int Q1D,
const int NE,
const Array<double> &Bo_,
const Array<double> &Bc_,
const Array<double> &Bot_,
const Array<double> &Bct_,
const Vector &op_,
const Vector &x_,
Vector &y_);
void PAHdivMassApply(const int dim,
const int D1D,
const int Q1D,
const int NE,
const bool symmetric,
const Array<double> &Bo,
const Array<double> &Bc,
const Array<double> &Bot,
const Array<double> &Bct,
const Vector &op,
const Vector &x,
Vector &y);
void PAHcurlL2Setup(const int NQ,
const int coeffDim,
@@ -818,68 +814,79 @@ void VectorFEMassIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
pa_data.SetSize((symmetric ? symmDims : MQfullDim) * nq * ne,
Device::GetMemoryType());
Vector coeff(coeffDim * ne * nq);
coeff = 1.0;
auto coeffh = Reshape(coeff.HostWrite(), coeffDim, nq, ne);
if (Q || DQ || MQ)
Vector coeff;
auto *qf_c = dynamic_cast<QuadratureFunctionCoefficient*>(Q);
if (qf_c)
{
Vector DM(DQ ? coeffDim : 0);
DenseMatrix M;
DenseSymmetricMatrix SM;
const QuadratureFunction &qf = qf_c->GetQuadFunction();
qf.Read();
coeff.MakeRef(const_cast<QuadratureFunction&>(qf), 0);
}
else
{
coeff.SetSize(coeffDim * ne * nq);
coeff = 1.0;
auto coeffh = Reshape(coeff.HostWrite(), coeffDim, nq, ne);
if (Q || DQ || MQ)
{
Vector DM(DQ ? coeffDim : 0);
DenseMatrix M;
DenseSymmetricMatrix SM;
if (DQ)
{
MFEM_VERIFY(coeffDim == dim, "");
}
if (SMQ)
{
MFEM_VERIFY(SMQ->GetSize() == dim, "");
SM.SetSize(dim);
}
else if (MQ)
{
MFEM_VERIFY(coeffDim == MQdim, "");
MFEM_VERIFY(MQ->GetHeight() == dim && MQ->GetWidth() == dim, "");
M.SetSize(dim);
}
for (int e=0; e<ne; ++e)
{
ElementTransformation *tr = mesh->GetElementTransformation(e);
for (int p=0; p<nq; ++p)
if (DQ)
{
if (SMQ)
{
SMQ->Eval(SM, *tr, ir->IntPoint(p));
int cnt = 0;
for (int i=0; i<dim; ++i)
for (int j=i; j<dim; ++j, ++cnt)
{
coeffh(cnt, p, e) = SM(i,j);
}
}
else if (MQ)
{
MQ->Eval(M, *tr, ir->IntPoint(p));
MFEM_VERIFY(coeffDim == dim, "");
}
if (SMQ)
{
MFEM_VERIFY(SMQ->GetSize() == dim, "");
SM.SetSize(dim);
}
else if (MQ)
{
MFEM_VERIFY(coeffDim == MQdim, "");
MFEM_VERIFY(MQ->GetHeight() == dim && MQ->GetWidth() == dim, "");
M.SetSize(dim);
}
for (int i=0; i<dim; ++i)
for (int j=0; j<dim; ++j)
{
coeffh(j+(i*dim), p, e) = M(i,j);
}
}
else if (DQ)
for (int e=0; e<ne; ++e)
{
ElementTransformation *tr = mesh->GetElementTransformation(e);
for (int p=0; p<nq; ++p)
{
DQ->Eval(DM, *tr, ir->IntPoint(p));
for (int i=0; i<coeffDim; ++i)
if (SMQ)
{
coeffh(i, p, e) = DM[i];
SMQ->Eval(SM, *tr, ir->IntPoint(p));
int cnt = 0;
for (int i=0; i<dim; ++i)
for (int j=i; j<dim; ++j, ++cnt)
{
coeffh(cnt, p, e) = SM(i,j);
}
}
else if (MQ)
{
MQ->Eval(M, *tr, ir->IntPoint(p));
for (int i=0; i<dim; ++i)
for (int j=0; j<dim; ++j)
{
coeffh(j+(i*dim), p, e) = M(i,j);
}
}
else if (DQ)
{
DQ->Eval(DM, *tr, ir->IntPoint(p));
for (int i=0; i<coeffDim; ++i)
{
coeffh(i, p, e) = DM[i];
}
}
else
{
coeffh(0, p, e) = Q->Eval(*tr, ir->IntPoint(p));
}
}
else
{
coeffh(0, p, e) = Q->Eval(*tr, ir->IntPoint(p));
}
}
}
@@ -897,12 +904,12 @@ void VectorFEMassIntegrator::AssemblePA(const FiniteElementSpace &trial_fes,
}
else if (trial_div && test_div && dim == 3)
{
PAHdivSetup3D(quad1D, ne, ir->GetWeights(), geom->J,
PAHdivSetup3D(quad1D, coeffDim, ne, ir->GetWeights(), geom->J,
coeff, pa_data);
}
else if (trial_div && test_div && dim == 2)
{
PAHdivSetup2D(quad1D, ne, ir->GetWeights(), geom->J,
PAHdivSetup2D(quad1D, coeffDim, ne, ir->GetWeights(), geom->J,
coeff, pa_data);
}
else if (((trial_curl && test_div) || (trial_div && test_curl)) &&
@@ -963,7 +970,7 @@ void VectorFEMassIntegrator::AssembleDiagonalPA(Vector& diag)
else if (trial_fetype == mfem::FiniteElement::DIV &&
test_fetype == trial_fetype)
{
PAHdivMassAssembleDiagonal3D(dofs1D, quad1D, ne,
PAHdivMassAssembleDiagonal3D(dofs1D, quad1D, ne, symmetric,
mapsO->B, mapsC->B, pa_data, diag);
}
else
@@ -971,7 +978,7 @@ void VectorFEMassIntegrator::AssembleDiagonalPA(Vector& diag)
MFEM_ABORT("Unknown kernel.");
}
}
else
else // 2D
{
if (trial_fetype == mfem::FiniteElement::CURL && test_fetype == trial_fetype)
{
@@ -981,7 +988,7 @@ void VectorFEMassIntegrator::AssembleDiagonalPA(Vector& diag)
else if (trial_fetype == mfem::FiniteElement::DIV &&
test_fetype == trial_fetype)
{
PAHdivMassAssembleDiagonal2D(dofs1D, quad1D, ne,
PAHdivMassAssembleDiagonal2D(dofs1D, quad1D, ne, symmetric,
mapsO->B, mapsC->B, pa_data, diag);
}
else
@@ -1034,8 +1041,8 @@ void VectorFEMassIntegrator::AddMultPA(const Vector &x, Vector &y) const
}
else if (trial_div && test_div)
{
PAHdivMassApply3D(dofs1D, quad1D, ne, mapsO->B, mapsC->B, mapsO->Bt,
mapsC->Bt, pa_data, x, y);
PAHdivMassApply(3, dofs1D, quad1D, ne, symmetric, mapsO->B, mapsC->B, mapsO->Bt,
mapsC->Bt, pa_data, x, y);
}
else if (trial_curl && test_div)
{
@@ -1056,7 +1063,7 @@ void VectorFEMassIntegrator::AddMultPA(const Vector &x, Vector &y) const
MFEM_ABORT("Unknown kernel.");
}
}
else
else // 2D
{
if (trial_curl && test_curl)
{
@@ -1065,8 +1072,8 @@ void VectorFEMassIntegrator::AddMultPA(const Vector &x, Vector &y) const
}
else if (trial_div && test_div)
{
PAHdivMassApply2D(dofs1D, quad1D, ne, mapsO->B, mapsC->B, mapsO->Bt,
mapsC->Bt, pa_data, x, y);
PAHdivMassApply(2, dofs1D, quad1D, ne, symmetric, mapsO->B, mapsC->B, mapsO->Bt,
mapsC->Bt, pa_data, x, y);
}
else if ((trial_curl && test_div) || (trial_div && test_curl))
{
@@ -1111,6 +1118,11 @@ void VectorFEMassIntegrator::AddMultTransposePA(const Vector &x,
if (symmetricSpaces)
{
if (MQ && dynamic_cast<SymmetricMatrixCoefficient*>(MQ) == NULL)
{
MFEM_ABORT("VectorFEMassIntegrator transpose not implemented for asymmetric MatrixCoefficient");
}
this->AddMultPA(x, y);
}
}
+512
View File
@@ -0,0 +1,512 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
namespace mfem
{
BlockBilinearForm::BlockBilinearForm(Array<FiniteElementSpace *> & fespaces_) :
Matrix(0), fespaces(fespaces_)
{
height = 0;
nblocks = fespaces.Size();
dof_offsets.SetSize(nblocks+1);
tdof_offsets.SetSize(nblocks+1);
dof_offsets[0] = 0;
tdof_offsets[0] = 0;
for (int i =0; i<nblocks; i++)
{
dof_offsets[i+1] = fespaces[i]->GetVSize();
tdof_offsets[i+1] = fespaces[i]->GetTrueVSize();
}
dof_offsets.PartialSum();
tdof_offsets.PartialSum();
height = dof_offsets[nblocks];
width = height;
mat = mat_e = NULL;
extern_bfs = 0;
element_matrices = NULL;
diag_policy = DIAG_KEEP;
}
// Allocate appropriate SparseMatrix and assign it to mat
void BlockBilinearForm::AllocMat()
{
mat = new SparseMatrix(height);
}
void BlockBilinearForm::BuildProlongation()
{
P = new BlockMatrix(dof_offsets, tdof_offsets);
R = new BlockMatrix(tdof_offsets, dof_offsets);
for (int i = 0; i<nblocks; i++)
{
const SparseMatrix *P_ = fespaces[i]->GetConformingProlongation();
const SparseMatrix *R_ = fespaces[i]->GetRestrictionMatrix();
P->SetBlock(i,i,const_cast<SparseMatrix*>(P_));
R->SetBlock(i,i,const_cast<SparseMatrix*>(R_));
}
}
void BlockBilinearForm::ConformingAssemble()
{
Finalize(0);
MFEM_ASSERT(mat, "the BilinearForm is not assembled");
if (!P) { BuildProlongation(); }
SparseMatrix * Pm = P->CreateMonolithic();
SparseMatrix *Pt = Transpose(*Pm);
SparseMatrix *PtA = mfem::Mult(*Pt, *mat);
delete mat;
if (mat_e)
{
SparseMatrix *PtAe = mfem::Mult(*Pt, *mat_e);
delete mat_e;
mat_e = PtAe;
}
delete Pt;
mat = mfem::Mult(*PtA, *Pm);
delete PtA;
if (mat_e)
{
SparseMatrix *PtAeP = mfem::Mult(*mat_e, *Pm);
delete mat_e;
mat_e = PtAeP;
}
delete Pm;
height = mat->Height();
width = mat->Width();
}
void BlockBilinearForm::Mult(const Vector &x, Vector &y) const
{
// TODO
}
double& BlockBilinearForm::Elem (int i, int j)
{
return mat -> Elem(i,j);
}
const double& BlockBilinearForm::Elem (int i, int j) const
{
return mat -> Elem(i,j);
}
MatrixInverse * BlockBilinearForm::Inverse() const
{
return mat -> Inverse();
}
void BlockBilinearForm::Finalize(int skip_zeros)
{
mat->Finalize(skip_zeros);
if (mat_e) { mat_e->Finalize(skip_zeros); }
}
/// Adds new Block Domain Integrator. Assumes ownership of @a bfi.
void BlockBilinearForm::AddDomainIntegrator(BlockBilinearFormIntegrator *bfi)
{
domain_integs.Append(bfi);
}
/// Assembles the form i.e. sums over all domain integrators.
void BlockBilinearForm::Assemble(int skip_zeros)
{
ElementTransformation *eltrans;
DofTransformation * doftrans_j, *doftrans_k;
Mesh *mesh = fespaces[0] -> GetMesh();
DenseMatrix elmat, *elmat_p;
int nblocks = fespaces.Size();
Array<const FiniteElement *> fe(nblocks);
Array<int> vdofs_j, vdofs_k;
Array<int> offsetvdofs_j;
Array<int> elementblockoffsets(nblocks+1);
elementblockoffsets[0] = 0;
Array<int> blockoffsets(nblocks+1);
blockoffsets[0] = 0;
for (int i =0; i<nblocks; i++)
{
blockoffsets[i+1] = fespaces[i]->GetVSize();
}
blockoffsets.PartialSum();
// mfem::out << "blockoffsets = " ; blockoffsets.Print();
if (mat == NULL)
{
AllocMat();
}
if (domain_integs.Size())
{
// loop through elements
for (int i = 0; i < mesh -> GetNE(); i++)
{
if (element_matrices)
{
elmat_p = &(*element_matrices)(i);
}
else
{
elmat.SetSize(0);
for (int k = 0; k < domain_integs.Size(); k++)
{
for (int j = 0; j<nblocks; j++)
{
fe[j] = fespaces[j]->GetFE(i);
elementblockoffsets[j+1] = fe[j]->GetDof();
}
elementblockoffsets.PartialSum();
eltrans = mesh->GetElementTransformation(i);
domain_integs[k]->AssembleElementMatrix(fe, *eltrans, elemmat);
if (elmat.Size() == 0)
{
elmat = elemmat;
}
else
{
elmat += elemmat;
}
}
}
if (elmat.Size() == 0)
{
continue;
}
else
{
elmat_p = &elmat;
}
vdofs.SetSize(0);
for (int j = 0; j<nblocks; j++)
{
doftrans_j = fespaces[j]->GetElementVDofs(i, vdofs_j);
int jbeg = elementblockoffsets[j];
int jend = elementblockoffsets[j+1]-1;
int offset_j = blockoffsets[j];
offsetvdofs_j.SetSize(vdofs_j.Size());
for (int l = 0; l<vdofs_j.Size(); l++)
{
offsetvdofs_j[l] = vdofs_j[l]<0 ? -offset_j + vdofs_j[l]
: offset_j + vdofs_j[l];
}
vdofs.Append(offsetvdofs_j);
for (int k = 0; k<nblocks; k++)
{
doftrans_k = fespaces[k]->GetElementVDofs(i, vdofs_k);
if (doftrans_k || doftrans_j)
{
int kbeg = elementblockoffsets[k];
int kend = elementblockoffsets[k+1]-1;
DenseMatrix A;
elmat_p->GetSubMatrix(jbeg,jend,kbeg, kend, A);
TransformDual(doftrans_j, doftrans_k, A);
elmat_p->SetSubMatrix(jbeg,kbeg,A);
}
}
}
mat->AddSubMatrix(vdofs,vdofs,*elmat_p, skip_zeros);
}
}
}
void BlockBilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list,
Vector &x,
Vector &b, OperatorHandle &A, Vector &X,
Vector &B, int copy_interior)
{
FormSystemMatrix(ess_tdof_list, A);
if (!P)
{
EliminateVDofsInRHS(ess_tdof_list, x, b);
X.MakeRef(x, 0, x.Size());
B.MakeRef(b, 0, b.Size());
if (!copy_interior) { X.SetSubVectorComplement(ess_tdof_list, 0.0); }
}
else // non conforming space
{
B.SetSize(P->Width());
P->MultTranspose(b, B);
X.SetSize(R->Height());
mfem::out << "R height, width = " << R->Height() <<" x "<< R->Width() <<
std::endl;
R->Mult(x, X);
EliminateVDofsInRHS(ess_tdof_list, X, B);
if (!copy_interior) { X.SetSubVectorComplement(ess_tdof_list, 0.0); }
}
}
void BlockBilinearForm::FormSystemMatrix(const Array<int> &ess_tdof_list,
OperatorHandle &A)
{
if (!mat_e)
{
const SparseMatrix *P_ = fespaces[0]->GetConformingProlongation();
if (P_) { ConformingAssemble(); }
EliminateVDofs(ess_tdof_list, diag_policy);
const int remove_zeros = 0;
Finalize(remove_zeros);
}
A.Reset(mat, false);
}
void BlockBilinearForm::RecoverFEMSolution(const Vector &X, const Vector &b,
Vector &x)
{
if (!P)
{
x.SyncMemory(X);
}
else
{
// Apply conforming prolongation
x.SetSize(P->Height());
P->Mult(X, x);
}
}
void BlockBilinearForm::ComputeElementMatrices()
{
MFEM_ABORT("BlockBilinearForm::ComputeElementMatrices:not implemented yet")
}
void BlockBilinearForm::ComputeElementMatrix(int i, DenseMatrix &elmat)
{
if (element_matrices)
{
elmat.SetSize(element_matrices->SizeI(), element_matrices->SizeJ());
elmat = element_matrices->GetData(i);
return;
}
int nblocks = fespaces.Size();
Array<const FiniteElement *> fe(nblocks);
ElementTransformation *eltrans;
elmat.SetSize(0);
if (domain_integs.Size())
{
for (int j = 0; j<nblocks; j++)
{
fe[j] = fespaces[j]->GetFE(i);
}
eltrans = fespaces[0]->GetElementTransformation(i);
domain_integs[0]->AssembleElementMatrix(fe, *eltrans, elmat);
for (int k = 1; k < domain_integs.Size(); k++)
{
domain_integs[k]->AssembleElementMatrix(fe, *eltrans, elemmat);
elmat += elemmat;
}
}
else
{
int matsize = 0;
for (int j = 0; j<nblocks; j++)
{
matsize += fespaces[j]->GetFE(i)->GetDof();
}
elmat.SetSize(matsize);
elmat = 0.0;
}
}
void BlockBilinearForm::EliminateEssentialBC(const Array<int> &bdr_attr_is_ess,
const Vector &sol, Vector &rhs,
DiagonalPolicy dpolicy)
{
MFEM_ABORT("BlockBilinearForm::EliminateEssentialBC: not implemented yet");
// Array<int> ess_dofs, conf_ess_dofs;
// fes->GetEssentialVDofs(bdr_attr_is_ess, ess_dofs);
// if (fes->GetVSize() == height)
// {
// EliminateEssentialBCFromDofs(ess_dofs, sol, rhs, dpolicy);
// }
// else
// {
// fes->GetRestrictionMatrix()->BooleanMult(ess_dofs, conf_ess_dofs);
// EliminateEssentialBCFromDofs(conf_ess_dofs, sol, rhs, dpolicy);
// }
}
void BlockBilinearForm::EliminateEssentialBC(const Array<int> &bdr_attr_is_ess,
DiagonalPolicy dpolicy)
{
MFEM_ABORT("BlockBilinearForm::EliminateEssentialBC: not implemented yet");
// Array<int> ess_dofs, conf_ess_dofs;
// fes->GetEssentialVDofs(bdr_attr_is_ess, ess_dofs);
// if (fes->GetVSize() == height)
// {
// EliminateEssentialBCFromDofs(ess_dofs, dpolicy);
// }
// else
// {
// fes->GetRestrictionMatrix()->BooleanMult(ess_dofs, conf_ess_dofs);
// EliminateEssentialBCFromDofs(conf_ess_dofs, dpolicy);
// }
}
void BlockBilinearForm::EliminateEssentialBCDiag (const Array<int>
&bdr_attr_is_ess,
double value)
{
MFEM_ABORT("BlockBilinearForm::EliminateEssentialBCDiag: not implemented yet");
// Array<int> ess_dofs, conf_ess_dofs;
// fes->GetEssentialVDofs(bdr_attr_is_ess, ess_dofs);
// if (fes->GetVSize() == height)
// {
// EliminateEssentialBCFromDofsDiag(ess_dofs, value);
// }
// else
// {
// fes->GetRestrictionMatrix()->BooleanMult(ess_dofs, conf_ess_dofs);
// EliminateEssentialBCFromDofsDiag(conf_ess_dofs, value);
// }
}
void BlockBilinearForm::EliminateVDofs(const Array<int> &vdofs,
const Vector &sol, Vector &rhs,
DiagonalPolicy dpolicy)
{
vdofs.HostRead();
for (int i = 0; i < vdofs.Size(); i++)
{
int vdof = vdofs[i];
if ( vdof >= 0 )
{
mat -> EliminateRowCol (vdof, sol(vdof), rhs, dpolicy);
}
else
{
mat -> EliminateRowCol (-1-vdof, sol(-1-vdof), rhs, dpolicy);
}
}
}
void BlockBilinearForm::EliminateVDofs(const Array<int> &vdofs,
DiagonalPolicy dpolicy)
{
if (mat_e == NULL)
{
mat_e = new SparseMatrix(height);
}
// mat -> EliminateCols(vdofs, *mat_e,)
for (int i = 0; i < vdofs.Size(); i++)
{
int vdof = vdofs[i];
if ( vdof >= 0 )
{
mat -> EliminateRowCol (vdof, *mat_e, dpolicy);
}
else
{
mat -> EliminateRowCol (-1-vdof, *mat_e, dpolicy);
}
}
}
void BlockBilinearForm::EliminateEssentialBCFromDofs(
const Array<int> &ess_dofs, const Vector &sol, Vector &rhs,
DiagonalPolicy dpolicy)
{
MFEM_ASSERT(ess_dofs.Size() == height, "incorrect dof Array size");
MFEM_ASSERT(sol.Size() == height, "incorrect sol Vector size");
MFEM_ASSERT(rhs.Size() == height, "incorrect rhs Vector size");
for (int i = 0; i < ess_dofs.Size(); i++)
{
if (ess_dofs[i] < 0)
{
mat -> EliminateRowCol (i, sol(i), rhs, dpolicy);
}
}
}
void BlockBilinearForm::EliminateEssentialBCFromDofs (const Array<int>
&ess_dofs,
DiagonalPolicy dpolicy)
{
MFEM_ASSERT(ess_dofs.Size() == height, "incorrect dof Array size");
for (int i = 0; i < ess_dofs.Size(); i++)
{
if (ess_dofs[i] < 0)
{
mat -> EliminateRowCol (i, dpolicy);
}
}
}
void BlockBilinearForm::EliminateEssentialBCFromDofsDiag (
const Array<int> &ess_dofs,
double value)
{
MFEM_ASSERT(ess_dofs.Size() == height, "incorrect dof Array size");
for (int i = 0; i < ess_dofs.Size(); i++)
{
if (ess_dofs[i] < 0)
{
mat -> EliminateRowColDiag (i, value);
}
}
}
void BlockBilinearForm::EliminateVDofsInRHS(
const Array<int> &vdofs, const Vector &x, Vector &b)
{
mat_e->AddMult(x, b, -1.);
mat->PartMult(vdofs, x, b);
}
BlockBilinearForm::~BlockBilinearForm()
{
delete mat_e;
delete mat;
delete element_matrices;
for (int k=0; k < domain_integs.Size(); k++)
{
delete domain_integs[k];
}
for (int k=0; k < trace_integs.Size(); k++)
{
delete trace_integs[k];
}
delete P;
delete R;
}
} // namespace mfem
+288
View File
@@ -0,0 +1,288 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_BLOCKBILINEARFORM
#define MFEM_BLOCKBILINEARFORM
#include "../config/config.hpp"
#include "../linalg/linalg.hpp"
namespace mfem
{
/** @brief A "square matrix" operator for the associated FE space and
BLFIntegrators The sum of all the BLFIntegrators can be used form the matrix
M. */
class BlockBilinearForm : public Matrix
{
protected:
int nblocks;
Array<int> dof_offsets;
Array<int> tdof_offsets;
/// Sparse matrix \f$ M \f$ to be associated with the form. Owned.
SparseMatrix *mat;
/** @brief Sparse Matrix \f$ M_e \f$ used to store the eliminations
from the b.c. Owned.
\f$ M + M_e = M_{original} \f$ */
SparseMatrix *mat_e;
/// FE spaces on which the block form lives. Not owned.
Array<FiniteElementSpace * > fespaces;
/** @brief Indicates the Mesh::sequence corresponding to the current state of
the BilinearForm. */
long sequence;
/** @brief Indicates the BlockBilinearFormIntegrator%s stored in #domain_integs,
are owned by another BlockBilinearForm. */
int extern_bfs;
/// Set of Domain Integrators to be applied.
Array<BlockBilinearFormIntegrator * > domain_integs;
/// Trace integrators.
Array<BlockBilinearFormIntegrator * > trace_integs;
DenseMatrix elemmat;
Array<int> vdofs;
DenseTensor *element_matrices; ///< Owned.
BlockMatrix * P = nullptr; // Block Prolongation
BlockMatrix * R = nullptr; // Block Restriction
/** This data member allows one to specify what should be done to the
diagonal matrix entries and corresponding RHS values upon elimination of
the constrained DoFs. */
DiagonalPolicy diag_policy;
// Allocate appropriate SparseMatrix and assign it to mat
void AllocMat();
void ConformingAssemble();
void BuildProlongation();
private:
public:
/// Creates bilinear form associated with FE spaces @a *fespaces.
BlockBilinearForm(Array<FiniteElementSpace * > & fespaces_);
/// Get the size of the BilinearForm as a square matrix.
int Size() const { return height; }
/// Pre-allocate the internal SparseMatrix before assembly.
void AllocateMatrix() { if (mat == NULL) { AllocMat(); } }
/// Returns a reference to: \f$ M_{ij} \f$
const double &operator()(int i, int j) { return (*mat)(i,j); }
/// Matrix vector multiplication: \f$ y = M x \f$
virtual void Mult(const Vector &x, Vector &y) const;
/** @brief Matrix vector multiplication with the original uneliminated
matrix. The original matrix is \f$ M + M_e \f$ so we have:
\f$ y = M x + M_e x \f$ */
void FullMult(const Vector &x, Vector &y) const
{ mat->Mult(x, y); mat_e->AddMult(x, y); }
virtual double &Elem(int i, int j);
virtual const double &Elem(int i, int j) const;
virtual MatrixInverse *Inverse() const;
/// Finalizes the matrix initialization.
virtual void Finalize(int skip_zeros = 1);
/// Returns a const reference to the sparse matrix.
const SparseMatrix &SpMat() const
{
MFEM_VERIFY(mat, "mat is NULL and can't be dereferenced");
return *mat;
}
/// Returns a reference to the sparse matrix: \f$ M \f$
SparseMatrix &SpMat()
{
MFEM_VERIFY(mat, "mat is NULL and can't be dereferenced");
return *mat;
}
/// Returns a const reference to the sparse matrix of eliminated b.c.: \f$ M_e \f$
const SparseMatrix &SpMatElim() const
{
MFEM_VERIFY(mat_e, "mat_e is NULL and can't be dereferenced");
return *mat_e;
}
/// Returns a reference to the sparse matrix of eliminated b.c.: \f$ M_e \f$
SparseMatrix &SpMatElim()
{
MFEM_VERIFY(mat_e, "mat_e is NULL and can't be dereferenced");
return *mat_e;
}
/// Adds new Domain Integrator. Assumes ownership of @a bfi.
void AddDomainIntegrator(BlockBilinearFormIntegrator *bfi);
/// Adds new Trace Integrator. Assumes ownership of @a bfi.
void AddTraceIntegrator(BlockBilinearFormIntegrator *bfi);
/// Sets all sparse values of \f$ M \f$ and \f$ M_e \f$ to 'a'.
void operator=(const double a)
{
if (mat != NULL) { *mat = a; }
if (mat_e != NULL) { *mat_e = a; }
}
/// Assembles the form i.e. sums over all domain integrators.
void Assemble(int skip_zeros = 1);
virtual void FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
Vector &b, OperatorHandle &A, Vector &X,
Vector &B, int copy_interior = 0);
/** @brief Form the linear system A X = B, corresponding to this bilinear
form and the linear form @a b(.). */
/** Version of the method FormLinearSystem() where the system matrix is
returned in the variable @a A, of type OpType, holding a *reference* to
the system matrix (created with the method OpType::MakeRef()). The
reference will be invalidated when SetOperatorType(), Update(), or the
destructor is called. */
template <typename OpType>
void FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x, Vector &b,
OpType &A, Vector &X, Vector &B,
int copy_interior = 0)
{
OperatorHandle Ah;
FormLinearSystem(ess_tdof_list, x, b, Ah, X, B, copy_interior);
OpType *A_ptr = Ah.Is<OpType>();
MFEM_VERIFY(A_ptr, "invalid OpType used");
A.MakeRef(*A_ptr);
}
virtual void FormSystemMatrix(const Array<int> &ess_tdof_list,
OperatorHandle &A);
/// Form the linear system matrix A, see FormLinearSystem() for details.
/** Version of the method FormSystemMatrix() where the system matrix is
returned in the variable @a A, of type OpType, holding a *reference* to
the system matrix (created with the method OpType::MakeRef()). The
reference will be invalidated when SetOperatorType(), Update(), or the
destructor is called. */
template <typename OpType>
void FormSystemMatrix(const Array<int> &ess_tdof_list, OpType &A)
{
OperatorHandle Ah;
FormSystemMatrix(ess_tdof_list, Ah);
OpType *A_ptr = Ah.Is<OpType>();
MFEM_VERIFY(A_ptr, "invalid OpType used");
A.MakeRef(*A_ptr);
}
virtual void RecoverFEMSolution(const Vector &X, const Vector &b, Vector &x);
void ComputeElementMatrices();
/// Free the memory used by the element matrices.
void FreeElementMatrices()
{ delete element_matrices; element_matrices = NULL; }
/// Compute the element matrix of the given element
/** The element matrix is computed by calling the domain integrators
or the one stored internally by a prior call of ComputeElementMatrices()
is returned when available.
*/
void ComputeElementMatrix(int i, DenseMatrix &elmat);
/// Eliminate essential boundary DOFs from the system.
/** The array @a bdr_attr_is_ess marks boundary attributes that constitute
the essential part of the boundary. By default, the diagonal at the
essential DOFs is set to 1.0. This behavior is controlled by the argument
@a dpolicy. */
void EliminateEssentialBC(const Array<int> &bdr_attr_is_ess,
const Vector &sol, Vector &rhs,
DiagonalPolicy dpolicy = DIAG_ONE);
/// Eliminate essential boundary DOFs from the system matrix.
void EliminateEssentialBC(const Array<int> &bdr_attr_is_ess,
DiagonalPolicy dpolicy = DIAG_ONE);
/// Perform elimination and set the diagonal entry to the given value
void EliminateEssentialBCDiag(const Array<int> &bdr_attr_is_ess,
double value);
/// Eliminate the given @a vdofs.
/** NOTE: here, @a vdofs is a list of DOFs from all the fespaces
In this case the eliminations are applied to the internal \f$ M \f$
and @a rhs without storing the elimination matrix \f$ M_e \f$. */
void EliminateVDofs(const Array<int> &vdofs, const Vector &sol, Vector &rhs,
DiagonalPolicy dpolicy = DIAG_ONE);
/// Eliminate the given @a vdofs (all the fespaces), storing the eliminated part internally in \f$ M_e \f$.
/** This method works in conjunction with EliminateVDofsInRHS() and allows
elimination of boundary conditions in multiple right-hand sides. In this
method, @a vdofs is a list of DOFs. */
void EliminateVDofs(const Array<int> &vdofs,
DiagonalPolicy dpolicy = DIAG_ONE);
/** @brief Similar to
EliminateVDofs(const Array<int> &, const Vector &, Vector &, DiagonalPolicy)
but here @a ess_dofs is a marker (boolean) array on all vector-dofs
(@a ess_dofs[i] < 0 is true). */
void EliminateEssentialBCFromDofs(const Array<int> &ess_dofs, const Vector &sol,
Vector &rhs, DiagonalPolicy dpolicy = DIAG_ONE);
/** @brief Similar to EliminateVDofs(const Array<int> &, DiagonalPolicy) but
here @a ess_dofs is a marker (boolean) array on all vector-dofs
(@a ess_dofs[i] < 0 is true). */
void EliminateEssentialBCFromDofs(const Array<int> &ess_dofs,
DiagonalPolicy dpolicy = DIAG_ONE);
/// Perform elimination and set the diagonal entry to the given value
void EliminateEssentialBCFromDofsDiag(const Array<int> &ess_dofs,
double value);
/** @brief Use the stored eliminated part of the matrix (see
EliminateVDofs(const Array<int> &, DiagonalPolicy)) to modify the r.h.s.
@a b; @a vdofs is a list of DOFs (non-directional, i.e. >= 0). */
void EliminateVDofsInRHS(const Array<int> &vdofs, const Vector &x,
Vector &b);
/// Sets diagonal policy used upon construction of the linear system.
/** Policies include:
- DIAG_ZERO (Set the diagonal values to zero)
- DIAG_ONE (Set the diagonal values to one)
- DIAG_KEEP (Keep the diagonal values)
*/
void SetDiagonalPolicy(DiagonalPolicy policy)
{
diag_policy = policy;
}
/// Destroys bilinear form.
virtual ~BlockBilinearForm();
};
} // namespace mfem
#endif
+136
View File
@@ -0,0 +1,136 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
namespace mfem
{
void BlockBilinearFormIntegrator::AssembleElementMatrix(
const Array<const FiniteElement *> &el,
ElementTransformation &Trans,
DenseMatrix &elmat)
{
mfem_error ("BlockBilinearFormIntegrator::AssembleElementMatrix\n"
" is not implemented for this class.");
}
void BlockLinearFormIntegrator::AssembleRHSElementVect(
const Array<const FiniteElement *> &el,
ElementTransformation &Trans,
Vector &elvect)
{
mfem_error ("BlockLinearFormIntegrator::AssembleElementVector\n"
" is not implemented for this class.");
}
/** Given a particular Finite Element computes the element vector */
void TestBlockBilinearFormIntegrator::AssembleElementMatrix
(const Array<const FiniteElement *> &el,
ElementTransformation &Trans,
DenseMatrix &elmat)
{
int nd = 0;
int nblocks = el.Size();
Array<int> offsets(nblocks+1);
offsets[0] = 0;
for (int i = 0; i<nblocks; i++)
{
nd += el[i]->GetDof();
offsets[i+1] = el[i]->GetDof();
}
offsets.PartialSum();
elmat.SetSize(nd);
elmat = 0.0;
DenseMatrix dmat;
if (blfis.NumRows())
{
// Get the matrices directly from the existing BilinearFormIntegrators
for (int i = 0; i<nblocks; i++)
{
// mfem::out << "i = " << i << std::endl;
int offset_i = offsets[i];
const FiniteElement * fe_i = el[i];
for (int j = 0; j<nblocks; j++)
{
// mfem::out << "j = " << j << std::endl;
BilinearFormIntegrator * blfi = blfis(i,j);
if (!blfi) { continue; }
if (j == i)
{
blfi->AssembleElementMatrix(*fe_i,Trans,dmat);
// mfem::out << "j 1 = " << j << std::endl;
elmat.SetSubMatrix(offset_i,dmat);
}
else
{
const FiniteElement * fe_j = el[j];
blfi->AssembleElementMatrix2(*fe_j,*fe_i,Trans,dmat);
// mfem::out << "j 2 = " << j << std::endl;
int offset_j = offsets[j];
elmat.SetSubMatrix(offset_i,offset_j,dmat);
}
}
}
return;
}
// else compute the matrices
elmat = 25.0;
// TODO
}
/** Given a particular Finite Element computes the element vector */
void TestBlockLinearFormIntegrator::AssembleRHSElementVect
(const Array<const FiniteElement *> &el,
ElementTransformation &Trans,
Vector &elvector)
{
int nd = 0;
int nblocks = el.Size();
Array<int> offsets(nblocks+1);
offsets[0] = 0;
for (int i = 0; i<nblocks; i++)
{
nd += el[i]->GetDof();
offsets[i+1] = el[i]->GetDof();
}
offsets.PartialSum();
elvector.SetSize(nd);
elvector = 0.0;
Vector subvector;
if (lfis.Size())
{
// Get the matrices directly from the existing BilinearFormIntegrators
for (int i = 0; i<nblocks; i++)
{
int offset = offsets[i];
const FiniteElement * fe_i = el[i];
LinearFormIntegrator * lfi = lfis[i];
if (!lfi)
{
continue;
}
lfi->AssembleRHSElementVect(*fe_i,Trans,subvector);
elvector.SetVector(subvector,offset);
}
return;
}
// else, compute the block linear form integrator
// elvector = 1.0;
// TODO
}
} // namespace mfem
+147
View File
@@ -0,0 +1,147 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_BLOCKINTEG
#define MFEM_BLOCKINTEG
#include "../config/config.hpp"
#include "fe.hpp"
#include "coefficient.hpp"
#include "fespace.hpp"
namespace mfem
{
/** The abstract base class BlockBilinearFormIntegrator is
a generalization of the BilinearFormIntegrator class suitable
for block formulations. */
class BlockBilinearFormIntegrator
{
protected:
const IntegrationRule *IntRule;
BlockBilinearFormIntegrator(const IntegrationRule *ir = NULL)
: IntRule(ir) { }
public:
/// Given a particular Finite Element computes the element matrix elmat.
virtual void AssembleElementMatrix(const Array<const FiniteElement *> &el,
ElementTransformation &Trans,
DenseMatrix &elmat);
virtual ~BlockBilinearFormIntegrator() { }
};
/** The abstract base class BlockBilinearFormIntegrator is
a generalization of the BilinearFormIntegrator class suitable
for block formulations. */
class BlockLinearFormIntegrator
{
protected:
const IntegrationRule *IntRule;
BlockLinearFormIntegrator(const IntegrationRule *ir = NULL)
: IntRule(ir) { }
public:
/// Given a particular Finite Element computes the element matrix elmat.
virtual void AssembleRHSElementVect(const Array<const FiniteElement *> &el,
ElementTransformation &Trans,
Vector &elvect);
virtual ~BlockLinearFormIntegrator() { }
};
class TestBlockBilinearFormIntegrator: public BlockBilinearFormIntegrator
{
protected:
Coefficient *Q;
Array<const FiniteElementSpace * > fespaces;
const DofToQuad *maps; ///< Not owned
const GeometricFactors *geom; ///< Not owned
int dim, ne, nq, dofs1D, quad1D;
Array2D<BilinearFormIntegrator *> blfis;
public:
TestBlockBilinearFormIntegrator(const IntegrationRule *ir = NULL)
: BlockBilinearFormIntegrator(ir), Q(NULL), maps(NULL), geom(NULL) { }
/// Construct a mass integrator with coefficient q
TestBlockBilinearFormIntegrator(Coefficient &q,
const IntegrationRule *ir = NULL)
: BlockBilinearFormIntegrator(ir), Q(&q), maps(NULL), geom(NULL) { }
TestBlockBilinearFormIntegrator(Array2D<BilinearFormIntegrator *> blfis_)
: BlockBilinearFormIntegrator(NULL), blfis(blfis_) { }
void SetIntegrators(Array2D<BilinearFormIntegrator *> blfis_)
{
blfis = blfis_;
}
/** Given a particular Finite Element computes the element matrix
elmat. */
virtual void AssembleElementMatrix(const Array<const FiniteElement *> &el,
ElementTransformation &Trans,
DenseMatrix &elmat);
virtual ~TestBlockBilinearFormIntegrator() { }
};
/** Class for local vector assembly */
class TestBlockLinearFormIntegrator: public BlockLinearFormIntegrator
{
protected:
Coefficient *Q;
Array<const FiniteElementSpace * > fespaces;
const DofToQuad *maps; ///< Not owned
const GeometricFactors *geom; ///< Not owned
int dim, ne, nq, dofs1D, quad1D;
Array<LinearFormIntegrator *> lfis;
public:
TestBlockLinearFormIntegrator(const IntegrationRule *ir = NULL)
: BlockLinearFormIntegrator(ir), Q(NULL), maps(NULL), geom(NULL) { }
/// Construct a test linear integrator with coefficient q
TestBlockLinearFormIntegrator(Coefficient &q, const IntegrationRule *ir = NULL)
: BlockLinearFormIntegrator(ir), Q(&q), maps(NULL), geom(NULL) { }
TestBlockLinearFormIntegrator(Array<LinearFormIntegrator *> lfis_)
: BlockLinearFormIntegrator(NULL), lfis(lfis_) { }
void SetIntegrators(Array<LinearFormIntegrator *> lfis_)
{
lfis = lfis_;
}
/** Given a particular Finite Element computes the element vector */
virtual void AssembleRHSElementVect(const Array<const FiniteElement *> &el,
ElementTransformation &Trans,
Vector &elvector);
};
} // namespace mfem
#endif
+123
View File
@@ -0,0 +1,123 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "fem.hpp"
namespace mfem
{
BlockLinearForm::BlockLinearForm(Array<FiniteElementSpace * > & fespaces_) :
Vector(0), fespaces(fespaces_)
{
int s = 0;
int nblocks = fespaces.Size();
for (int i =0; i<nblocks; i++)
{
s += fespaces[i]->GetVSize();
}
// mfem::out << "size = " << size << std::endl;
SetSize(s);
}
void BlockLinearForm::AddDomainIntegrator(BlockLinearFormIntegrator *lfi)
{
domain_integs.Append(lfi);
}
void BlockLinearForm::Assemble()
{
ElementTransformation *eltrans;
DofTransformation *doftrans;
Mesh *mesh = fespaces[0] -> GetMesh();
Vector subvect,elvect, *elvect_p;
int nblocks = fespaces.Size();
Array<const FiniteElement *> fe(nblocks);
Array<int> offsetvdofs;
Array<int> elementblockoffsets(nblocks+1);
elementblockoffsets[0] = 0;
Array<int> blockoffsets(nblocks+1);
blockoffsets[0] = 0;
for (int i =0; i<nblocks; i++)
{
blockoffsets[i+1] = fespaces[i]->GetVSize();
}
blockoffsets.PartialSum();
Vector::operator=(0.0);
if (domain_integs.Size())
{
// loop through elements
for (int i = 0; i < mesh -> GetNE(); i++)
{
elvect.SetSize(0);
for (int k = 0; k < domain_integs.Size(); k++)
{
for (int j = 0; j<nblocks; j++)
{
fe[j] = fespaces[j]->GetFE(i);
elementblockoffsets[j+1] = fe[j]->GetDof();
}
elementblockoffsets.PartialSum();
eltrans = mesh->GetElementTransformation(i);
domain_integs[k]->AssembleRHSElementVect(fe, *eltrans, elemvect);
if (elvect.Size() == 0)
{
elvect = elemvect;
}
else
{
elvect += elemvect;
}
}
if (elvect.Size() == 0)
{
continue;
}
else
{
elvect_p = &elvect;
}
double *data = elvect_p->GetData();
for (int j = 0; j<nblocks; j++)
{
doftrans = fespaces[j]->GetElementVDofs(i, vdofs);
int offset = blockoffsets[j];
offsetvdofs.SetSize(vdofs.Size());
for (int l = 0; l<vdofs.Size(); l++)
{
offsetvdofs[l] = vdofs[l]<0 ? -offset + vdofs[l]
: offset + vdofs[l];
}
int jbeg = elementblockoffsets[j];
int jend = elementblockoffsets[j+1]-1;
subvect.SetSize(jend-jbeg+1);
subvect.SetData(&data[jbeg]);
if (doftrans)
{
doftrans->TransformDual(subvect);
}
AddElementVector(offsetvdofs,subvect);
}
}
}
}
} // name space mfem
+49
View File
@@ -0,0 +1,49 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_BLOCKLINEARFORM
#define MFEM_BLOCKLINEARFORM
#include "../config/config.hpp"
#include "../linalg/linalg.hpp"
namespace mfem
{
class BlockLinearForm : public Vector
{
protected:
/// FE spaces on which the LinearForm lives. Not owned.
Array<FiniteElementSpace * > fespaces;
/// Set of Domain Integrators to be applied.
Array<BlockLinearFormIntegrator*> domain_integs;
Vector elemvect;
Array<int> vdofs;
public:
BlockLinearForm(Array<FiniteElementSpace * > & fespaces_);
/// Adds new Domain Integrator. Assumes ownership of @a lfi.
void AddDomainIntegrator(BlockLinearFormIntegrator *lfi);
/// Assembles the block linear form i.e. sums over all domain integrators.
void Assemble();
};
} // namespace mfem
#endif
+969
View File
@@ -0,0 +1,969 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "blockstaticcond.hpp"
namespace mfem
{
BlockStaticCondensation::BlockStaticCondensation(Array<FiniteElementSpace *> &
fes_)
{
SetSpaces(fes_);
Array<int> rvdofs;
Array<int> vdofs;
Array<int> rdof_edof0;
for (int k = 0; k<nblocks; k++)
{
if (!tr_fes[k]) { continue; }
rdof_edof0.SetSize(tr_fes[k]->GetVSize());
for (int i = 0; i < mesh->GetNE(); i++)
{
fes[k]->GetElementVDofs(i, vdofs);
tr_fes[k]->GetElementVDofs(i, rvdofs);
const int vdim = fes[k]->GetVDim();
const int nsd = vdofs.Size()/vdim;
const int nsrd = rvdofs.Size()/vdim;
for (int vd = 0; vd < vdim; vd++)
{
for (int j = 0; j < nsrd; j++)
{
int rvdof = rvdofs[j+nsrd*vd];
int vdof = vdofs[j+nsd*vd];
if (rvdof < 0)
{
rvdof = -1-rvdof;
vdof = -1-vdof;
}
MFEM_ASSERT(vdof >= 0, "incompatible volume and trace FE spaces");
rdof_edof0[rvdof] = vdof + dof_offsets[k];
}
}
}
rdof_edof.Append(rdof_edof0);
}
}
void BlockStaticCondensation::SetSpaces(Array<FiniteElementSpace*> & fes_)
{
#ifdef MFEM_USE_MPI
ParMesh *pmesh = nullptr;
parallel = false;
if (dynamic_cast<ParFiniteElementSpace *>(fes_[0]))
{
parallel = true;
}
#else
parallel = false;
#endif
fes=fes_;
nblocks = fes.Size();
rblocks = 0;
tr_fes.SetSize(nblocks);
mesh = fes[0]->GetMesh();
IsTraceSpace.SetSize(nblocks);
const FiniteElementCollection * fec;
for (int i = 0; i < nblocks; i++)
{
fec = fes[i]->FEColl();
IsTraceSpace[i] =
(dynamic_cast<const H1_Trace_FECollection*>(fec) ||
dynamic_cast<const ND_Trace_FECollection*>(fec) ||
dynamic_cast<const RT_Trace_FECollection*>(fec));
#ifdef MFEM_USE_MPI
if (parallel)
{
pmesh = dynamic_cast<ParMesh *>(mesh);
tr_fes[i] = (fec->GetContType() == FiniteElementCollection::DISCONTINUOUS) ?
nullptr : (IsTraceSpace[i]) ? fes[i] :
new ParFiniteElementSpace(pmesh, fec->GetTraceCollection(), fes[i]->GetVDim(),
fes[i]->GetOrdering());
}
else
{
tr_fes[i] = (fec->GetContType() == FiniteElementCollection::DISCONTINUOUS) ?
nullptr : (IsTraceSpace[i]) ? fes[i] :
new FiniteElementSpace(mesh, fec->GetTraceCollection(), fes[i]->GetVDim(),
fes[i]->GetOrdering());
}
#else
// skip if it's an L2 space (no trace space to construct)
tr_fes[i] = (fec->GetContType() == FiniteElementCollection::DISCONTINUOUS) ?
nullptr : (IsTraceSpace[i]) ? fes[i] :
new FiniteElementSpace(mesh, fec->GetTraceCollection(), fes[i]->GetVDim(),
fes[i]->GetOrdering());
#endif
if (tr_fes[i]) { rblocks++; }
}
if (parallel)
{
ess_tdofs.SetSize(rblocks);
for (int i = 0; i<rblocks; i++)
{
ess_tdofs[i] = new Array<int>();
}
}
Init();
}
void BlockStaticCondensation::ComputeOffsets()
{
dof_offsets.SetSize(nblocks+1);
tdof_offsets.SetSize(nblocks+1);
dof_offsets[0] = 0;
tdof_offsets[0] = 0;
rdof_offsets.SetSize(rblocks+1);
rtdof_offsets.SetSize(rblocks+1);
rdof_offsets[0] = 0;
rtdof_offsets[0] = 0;
int j=0;
for (int i =0; i<nblocks; i++)
{
dof_offsets[i+1] = fes[i]->GetVSize();
tdof_offsets[i+1] = fes[i]->GetTrueVSize();
if (tr_fes[i])
{
rdof_offsets[j+1] = tr_fes[i]->GetVSize();
rtdof_offsets[j+1] = tr_fes[i]->GetTrueVSize();
j++;
}
}
rdof_offsets.PartialSum();
rtdof_offsets.PartialSum();
dof_offsets.PartialSum();
tdof_offsets.PartialSum();
}
void BlockStaticCondensation::Init()
{
lmat.SetSize(mesh->GetNE());
lvec.SetSize(mesh->GetNE());
for (int i = 0; i < mesh->GetNE(); i++)
{
lmat[i] = nullptr;
lvec[i] = nullptr;
}
ComputeOffsets();
S = new BlockMatrix(rdof_offsets);
S->owns_blocks = 1;
for (int i = 0; i<S->NumRowBlocks(); i++)
{
int h = rdof_offsets[i+1] - rdof_offsets[i];
for (int j = 0; j<S->NumColBlocks(); j++)
{
int w = rdof_offsets[j+1] - rdof_offsets[j];
S->SetBlock(i,j,new SparseMatrix(h, w));
}
}
y = new BlockVector(rdof_offsets);
*y = 0.;
}
void BlockStaticCondensation::GetReduceElementIndicesAndOffsets(int el,
Array<int> & trace_ldofs,
Array<int> & interior_ldofs,
Array<int> & offsets) const
{
int dim = mesh->Dimension();
offsets.SetSize(tr_fes.Size()+1); offsets = 0;
Array<int> dofs;
Array<int> faces, ori;
if (dim == 1)
{
mesh->GetElementVertices(el, faces);
}
if (dim == 2)
{
mesh->GetElementEdges(el, faces, ori);
}
else //dim = 3
{
mesh->GetElementFaces(el,faces,ori);
}
int numfaces = faces.Size();
trace_ldofs.SetSize(0);
interior_ldofs.SetSize(0);
// construct Array of bubble dofs to be extracted
int skip=0;
Array<int> tr_dofs;
Array<int> int_dofs;
for (int i = 0; i<tr_fes.Size(); i++)
{
int td = 0;
int ndof;
// if it's an L2 space (bubbles)
if (!tr_fes[i])
{
ndof = fes[i]->GetVDim()*fes[i]->GetFE(el)->GetDof();
td = 0;
}
else if (IsTraceSpace[i])
{
for (int iface = 0; iface < numfaces; iface++)
{
td += fes[i]->GetVDim()*fes[i]->GetFaceElement(faces[iface])->GetDof();
}
ndof = td;
}
else
{
Array<int> trace_dofs;
ndof = fes[i]->GetVDim()*fes[i]->GetFE(el)->GetDof();
tr_fes[i]->GetElementVDofs(el, trace_dofs);
td = trace_dofs.Size(); // number of trace dofs
}
offsets[i+1] = td;
tr_dofs.SetSize(td);
int_dofs.SetSize(ndof - td);
for (int j = 0; j<td; j++)
{
tr_dofs[j] = skip + j;
}
for (int j = 0; j<ndof-td; j++)
{
int_dofs[j] = skip + td + j;
}
skip+=ndof;
trace_ldofs.Append(tr_dofs);
interior_ldofs.Append(int_dofs);
}
offsets.PartialSum();
}
void BlockStaticCondensation::GetReduceElementVDofs(int el,
Array<int> & rdofs) const
{
Array<int> faces, ori;
int dim = mesh->Dimension();
if (dim == 1)
{
mesh->GetElementVertices(el, faces);
}
if (dim == 2)
{
mesh->GetElementEdges(el, faces, ori);
}
else //dim = 3
{
mesh->GetElementFaces(el,faces,ori);
}
int numfaces = faces.Size();
rdofs.SetSize(0);
int skip = 0;
for (int i = 0; i<tr_fes.Size(); i++)
{
if (!tr_fes[i]) { continue; }
Array<int> vdofs;
if (IsTraceSpace[i])
{
Array<int> face_vdofs;
for (int k = 0; k < numfaces; k++)
{
int iface = faces[k];
tr_fes[i]->GetFaceVDofs(iface, face_vdofs);
vdofs.Append(face_vdofs);
}
}
else
{
tr_fes[i]->GetElementVDofs(el, vdofs);
}
for (int j=0; j<vdofs.Size(); j++)
{
vdofs[j] = (vdofs[j]>=0) ? vdofs[j]+rdof_offsets[skip] :
vdofs[j]-rdof_offsets[skip];
}
skip++;
rdofs.Append(vdofs);
}
}
void BlockStaticCondensation::GetElementVDofs(int el, Array<int> & vdofs) const
{
Array<int> faces, ori;
int dim = mesh->Dimension();
if (dim == 1)
{
mesh->GetElementVertices(el, faces);
}
if (dim == 2)
{
mesh->GetElementEdges(el, faces, ori);
}
else //dim = 3
{
mesh->GetElementFaces(el,faces,ori);
}
int numfaces = faces.Size();
vdofs.SetSize(0);
for (int i = 0; i<tr_fes.Size(); i++)
{
Array<int> dofs;
if (IsTraceSpace[i])
{
Array<int> face_vdofs;
for (int k = 0; k < numfaces; k++)
{
int iface = faces[k];
fes[i]->GetFaceVDofs(iface, face_vdofs);
dofs.Append(face_vdofs);
}
}
else
{
fes[i]->GetElementVDofs(el, dofs);
}
for (int j=0; j<dofs.Size(); j++)
{
dofs[j] = (dofs[j]>=0) ? dofs[j]+dof_offsets[i] :
dofs[j]-dof_offsets[i];
}
vdofs.Append(dofs);
}
}
void BlockStaticCondensation::GetLocalShurComplement(int el,
const Array<int> & tr_idx, const Array<int> & int_idx,
const DenseMatrix & elmat, const Vector & elvect,
DenseMatrix & rmat, Vector & rvect)
{
int rdofs = tr_idx.Size();
int idofs = int_idx.Size();
MFEM_VERIFY(idofs != 0, "Number of interior dofs is zero");
MFEM_VERIFY(rdofs != 0, "Number of interface dofs is zero");
rmat.SetSize(rdofs);
rvect.SetSize(rdofs);
DenseMatrix A_tt, A_ti, A_it, A_ii;
Vector y_t, y_i;
elmat.GetSubMatrix(tr_idx,A_tt);
elmat.GetSubMatrix(tr_idx,int_idx, A_ti);
elmat.GetSubMatrix(int_idx, tr_idx, A_it);
elmat.GetSubMatrix(int_idx, A_ii);
elvect.GetSubVector(tr_idx, y_t);
elvect.GetSubVector(int_idx, y_i);
DenseMatrixInverse lu(A_ii);
lu.Factor();
lmat[el] = new DenseMatrix(idofs,rdofs);
lvec[el] = new Vector(idofs);
lu.Mult(A_it,*lmat[el]);
lu.Mult(y_i,*lvec[el]);
// LHS
mfem::Mult(A_ti,*lmat[el],rmat);
rmat.Neg();
rmat.Add(1., A_tt);
// RHS
A_ti.Mult(*lvec[el], rvect);
rvect.Neg();
rvect.Add(1., y_t);
}
void BlockStaticCondensation::AssembleReducedSystem(int el,
DenseMatrix &elmat,
Vector & elvect)
{
// Get Shur Complement
Array<int> tr_idx, int_idx;
Array<int> offsets;
// Get local element idx and offsets for global assembly
GetReduceElementIndicesAndOffsets(el, tr_idx,int_idx, offsets);
DenseMatrix rmat, *rmatptr;
Vector rvec, *rvecptr;
// Extract the reduced matrices based on tr_idx and int_idx
if (int_idx.Size()!=0)
{
GetLocalShurComplement(el,tr_idx,int_idx, elmat, elvect, rmat, rvec);
rmatptr = &rmat;
rvecptr = &rvec;
}
else
{
rmatptr = &elmat;
rvecptr = &elvect;
}
// Assemble global mat and rhs
DofTransformation * doftrans_i, *doftrans_j;
Array<int> faces, ori;
int dim = mesh->Dimension();
if (dim == 1)
{
mesh->GetElementVertices(el, faces);
}
if (dim == 2)
{
mesh->GetElementEdges(el, faces, ori);
}
else //dim = 3
{
mesh->GetElementFaces(el,faces,ori);
}
int numfaces = faces.Size();
int skip_i=0;
for (int i = 0; i<tr_fes.Size(); i++)
{
if (!tr_fes[i]) { continue; }
Array<int> vdofs_i;
doftrans_i = nullptr;
if (IsTraceSpace[i])
{
Array<int> face_vdofs;
for (int k = 0; k < numfaces; k++)
{
int iface = faces[k];
tr_fes[i]->GetFaceVDofs(iface, face_vdofs);
vdofs_i.Append(face_vdofs);
}
}
else
{
doftrans_i = tr_fes[i]->GetElementVDofs(el, vdofs_i);
}
int skip_j=0;
for (int j = 0; j<tr_fes.Size(); j++)
{
if (!tr_fes[j]) { continue; }
Array<int> vdofs_j;
doftrans_j = nullptr;
if (IsTraceSpace[j])
{
Array<int> face_vdofs;
for (int k = 0; k < numfaces; k++)
{
int iface = faces[k];
tr_fes[j]->GetFaceVDofs(iface, face_vdofs);
vdofs_j.Append(face_vdofs);
}
}
else
{
doftrans_j = tr_fes[j]->GetElementVDofs(el, vdofs_j);
}
DenseMatrix Ae;
rmatptr->GetSubMatrix(offsets[i],offsets[i+1],
offsets[j],offsets[j+1], Ae);
if (doftrans_i || doftrans_j)
{
TransformDual(doftrans_i, doftrans_j, Ae);
}
S->GetBlock(skip_i,skip_j).AddSubMatrix(vdofs_i,vdofs_j, Ae);
skip_j++;
}
// assemble rhs
double * data = rvecptr->GetData();
Vector vec1;
// ref subvector
vec1.SetDataAndSize(&data[offsets[i]],
offsets[i+1]-offsets[i]);
if (doftrans_i)
{
doftrans_i->TransformDual(vec1);
}
y->GetBlock(skip_i).AddElementVector(vdofs_i,vec1);
skip_i++;
}
}
void BlockStaticCondensation::BuildProlongation()
{
P = new BlockMatrix(rdof_offsets, rtdof_offsets);
R = new BlockMatrix(rtdof_offsets, rdof_offsets);
P->owns_blocks = 0;
R->owns_blocks = 0;
int skip = 0;
for (int i = 0; i<nblocks; i++)
{
if (!tr_fes[i]) { continue; }
const SparseMatrix *P_ = tr_fes[i]->GetConformingProlongation();
if (P_)
{
const SparseMatrix *R_ = tr_fes[i]->GetRestrictionMatrix();
P->SetBlock(skip,skip,const_cast<SparseMatrix*>(P_));
R->SetBlock(skip,skip,const_cast<SparseMatrix*>(R_));
}
skip++;
}
}
#ifdef MFEM_USE_MPI
void BlockStaticCondensation::BuildParallelProlongation()
{
MFEM_VERIFY(parallel, "BuildParallelProlongation: wrong code path");
pP = new BlockOperator(rdof_offsets, rtdof_offsets);
R = new BlockMatrix(rtdof_offsets, rdof_offsets);
pP->owns_blocks = 0;
R->owns_blocks = 0;
int skip = 0;
for (int i = 0; i<nblocks; i++)
{
if (!tr_fes[i]) { continue; }
const HypreParMatrix *P_ =
dynamic_cast<ParFiniteElementSpace *>(tr_fes[i])->Dof_TrueDof_Matrix();
if (P_)
{
const SparseMatrix *R_ = tr_fes[i]->GetRestrictionMatrix();
pP->SetBlock(skip,skip,const_cast<HypreParMatrix*>(P_));
R->SetBlock(skip,skip,const_cast<SparseMatrix*>(R_));
}
skip++;
}
}
void BlockStaticCondensation::ParallelAssemble(BlockMatrix *m)
{
if (!pP) { BuildParallelProlongation(); }
pS = new BlockOperator(rtdof_offsets);
pS_e = new BlockOperator(rtdof_offsets);
pS->owns_blocks = 1;
pS_e->owns_blocks = 1;
HypreParMatrix * A = nullptr;
HypreParMatrix * PtAP = nullptr;
int skip_i=0;
ParFiniteElementSpace * pfes_i = nullptr;
ParFiniteElementSpace * pfes_j = nullptr;
for (int i = 0; i<nblocks; i++)
{
if (!tr_fes[i]) { continue; }
pfes_i = dynamic_cast<ParFiniteElementSpace*>(fes[i]);
HypreParMatrix * Pi = (HypreParMatrix*)(&pP->GetBlock(skip_i,skip_i));
int skip_j=0;
for (int j = 0; j<nblocks; j++)
{
if (!tr_fes[j]) { continue; }
if (m->IsZeroBlock(skip_i,skip_j)) { continue; }
if (skip_i == skip_j)
{
// Make block diagonal square hypre matrix
A = new HypreParMatrix(pfes_i->GetComm(), pfes_i->GlobalVSize(),
pfes_i->GetDofOffsets(),&m->GetBlock(skip_i,skip_i));
PtAP = RAP(A,Pi);
delete A;
pS_e->SetBlock(skip_i,skip_i,PtAP->EliminateRowsCols(*ess_tdofs[skip_i]));
}
else
{
pfes_j = dynamic_cast<ParFiniteElementSpace*>(fes[j]);
HypreParMatrix * Pj = (HypreParMatrix*)(&pP->GetBlock(skip_j,skip_j));
A = new HypreParMatrix(pfes_i->GetComm(), pfes_i->GlobalVSize(),
pfes_j->GlobalVSize(), pfes_i->GetDofOffsets(),
pfes_j->GetDofOffsets(), &m->GetBlock(skip_i,skip_j));
PtAP = RAP(Pi,A,Pj);
delete A;
pS_e->SetBlock(skip_i,skip_j,PtAP->EliminateCols(*ess_tdofs[skip_j]));
PtAP->EliminateRows(*ess_tdofs[skip_i]);
}
pS->SetBlock(skip_i,skip_j,PtAP);
skip_j++;
}
skip_i++;
}
}
#endif
void BlockStaticCondensation::ConformingAssemble(int skip_zeros)
{
Finalize(0);
if (!P) { BuildProlongation(); }
BlockMatrix * Pt = Transpose(*P);
BlockMatrix * PtA = mfem::Mult(*Pt, *S);
delete S;
if (S_e)
{
BlockMatrix *PtAe = mfem::Mult(*Pt, *S_e);
delete S_e;
S_e = PtAe;
}
delete Pt;
S = mfem::Mult(*PtA, *P);
delete PtA;
if (S_e)
{
BlockMatrix *PtAeP = mfem::Mult(*S_e, *P);
S_e = PtAeP;
}
height = S->Height();
width = S->Width();
}
void BlockStaticCondensation::Finalize(int skip_zeros)
{
if (S) { S->Finalize(skip_zeros); }
if (S_e) { S_e->Finalize(skip_zeros); }
}
void BlockStaticCondensation::FormSystemMatrix(Operator::DiagonalPolicy
diag_policy)
{
if (parallel)
{
FillEssTdofLists(ess_rtdof_list);
if (S)
{
const int remove_zeros = 0;
Finalize(remove_zeros);
ParallelAssemble(S);
delete S;
S=nullptr;
delete S_e;
S_e = nullptr;
}
}
else
{
if (!S_e)
{
bool conforming = true;
for (int i = 0; i<nblocks; i++)
{
if (!tr_fes[i]) { continue; }
const SparseMatrix *P_ = tr_fes[i]->GetConformingProlongation();
if (P_)
{
conforming = false;
break;
}
}
if (!conforming) { ConformingAssemble(0); }
const int remove_zeros = 0;
EliminateReducedTrueDofs(ess_rtdof_list, diag_policy);
Finalize(remove_zeros);
}
}
}
void BlockStaticCondensation::ConvertMarkerToReducedTrueDofs(
Array<int> & tdof_marker,
Array<int> & rtdof_marker)
{
// convert tdof_marker to dof_marker
rtdof_marker.SetSize(0);
Array<int> tdof_marker0;
Array<int> dof_marker0;
Array<int> dof_marker;
int * data = tdof_marker.GetData();
for (int i = 0; i<nblocks; i++)
{
tdof_marker0.MakeRef(&data[tdof_offsets[i]],tdof_offsets[i+1]-tdof_offsets[i]);
const SparseMatrix * R = fes[i]->GetRestrictionMatrix();
if (!R)
{
dof_marker0.MakeRef(tdof_marker0);
}
else
{
dof_marker0.SetSize(fes[i]->GetVSize());
R->BooleanMultTranspose(tdof_marker0, dof_marker0);
}
dof_marker.Append(dof_marker0);
}
int rdofs = rdof_edof.Size();
Array<int> rdof_marker(rdofs);
for (int i = 0; i < rdofs; i++)
{
rdof_marker[i] = dof_marker[rdof_edof[i]];
}
// convert rdof_marker to rtdof_marker
Array<int> rtdof_marker0;
Array<int> rdof_marker0;
int * rdata = rdof_marker.GetData();
int k=0;
for (int i = 0; i<nblocks; i++)
{
if (!tr_fes[i]) { continue; }
rdof_marker0.MakeRef(&rdata[rdof_offsets[k]],rdof_offsets[k+1]-rdof_offsets[k]);
const SparseMatrix *tr_R = tr_fes[i]->GetRestrictionMatrix();
if (!tr_R)
{
rtdof_marker0.MakeRef(rdof_marker0);
}
else
{
rtdof_marker0.SetSize(tr_fes[i]->GetTrueVSize());
tr_R->BooleanMult(rdof_marker0, rtdof_marker0);
}
rtdof_marker.Append(rtdof_marker0);
k++;
}
}
void BlockStaticCondensation::FillEssTdofLists(const Array<int> & ess_tdof_list)
{
int j;
for (int i = 0; i<ess_tdof_list.Size(); i++)
{
int tdof = ess_tdof_list[i];
for (j = 0; j < rblocks; j++)
{
if (rtdof_offsets[j+1] > tdof) { break; }
}
ess_tdofs[j]->Append(tdof-rtdof_offsets[j]);
}
}
void BlockStaticCondensation::SetEssentialTrueDofs(const Array<int>
&ess_tdof_list)
{
Array<int> tdof_marker;
Array<int> rtdof_marker;
FiniteElementSpace::ListToMarker(ess_tdof_list,tdof_offsets.Last(),tdof_marker);
ConvertMarkerToReducedTrueDofs(tdof_marker, rtdof_marker);
FiniteElementSpace::MarkerToList(rtdof_marker,ess_rtdof_list);
}
void BlockStaticCondensation::EliminateReducedTrueDofs(const Array<int>
&ess_rtdof_list,
Matrix::DiagonalPolicy dpolicy)
{
MFEM_VERIFY(!parallel, "EliminateReducedTrueDofs::Wrong Code path");
if (S_e == NULL)
{
Array<int> offsets;
offsets.MakeRef( (P) ? rtdof_offsets : rdof_offsets);
S_e = new BlockMatrix(offsets);
S_e->owns_blocks = 1;
for (int i = 0; i<S_e->NumRowBlocks(); i++)
{
int h = offsets[i+1] - offsets[i];
for (int j = 0; j<S_e->NumColBlocks(); j++)
{
int w = offsets[j+1] - offsets[j];
S_e->SetBlock(i,j,new SparseMatrix(h, w));
}
}
}
S->EliminateRowCols(ess_rtdof_list,S_e,dpolicy);
}
void BlockStaticCondensation::EliminateReducedTrueDofs(Matrix::DiagonalPolicy
dpolicy)
{
EliminateReducedTrueDofs(ess_rtdof_list, dpolicy);
}
void BlockStaticCondensation::ReduceSolution(const Vector &sol,
Vector &sc_sol) const
{
MFEM_ASSERT(sol.Size() == dof_offsets.Last(), "'sol' has incorrect size");
const int nrdofs = rdof_offsets.Last();
Vector sol_r;
if (!R)
{
sc_sol.SetSize(nrdofs);
sol_r.SetDataAndSize(sc_sol.GetData(), sc_sol.Size());
}
else
{
sol_r.SetSize(nrdofs);
}
for (int i = 0; i < nrdofs; i++)
{
sol_r(i) = sol(rdof_edof[i]);
}
if (R)
{
// wrap vector into a block vector
BlockVector blsol_r(sol_r,rdof_offsets);
sc_sol.SetSize(R->Height());
R->Mult(blsol_r, sc_sol);
}
}
void BlockStaticCondensation::ReduceSystem(Vector &x, Vector &X,
Vector &B,
int copy_interior) const
{
ReduceSolution(x, X);
if (parallel)
{
B.SetSize(pP->Width());
pP->MultTranspose(*y,B);
Vector tmp(B.Size());
pS_e->Mult(X,tmp);
B-=tmp;
for (int j = 0; j<rblocks; j++)
{
if (!ess_tdofs[j]->Size()) { continue; }
HypreParMatrix *Ah = (HypreParMatrix *)(&pS->GetBlock(j,j));
Vector diag;
Ah->GetDiag(diag);
for (int i = 0; i < ess_tdofs[j]->Size(); i++)
{
int tdof = (*ess_tdofs[j])[i];
int gdof = tdof + rtdof_offsets[j];
B(gdof) = diag(tdof)*X(gdof);
}
}
}
else
{
if (!P)
{
S_e->AddMult(X,*y,-1.);
S->PartMult(ess_rtdof_list,X,*y);
B.MakeRef(*y, 0, y->Size());
}
else
{
B.SetSize(P->Width());
P->MultTranspose(*y, B);
S_e->AddMult(X,B,-1.);
S->PartMult(ess_rtdof_list,X,B);
}
}
if (!copy_interior) { X.SetSubVectorComplement(ess_rtdof_list, 0.0); }
}
void BlockStaticCondensation::ComputeSolution(const Vector &sc_sol,
Vector &sol) const
{
const int nrdofs = rdof_offsets.Last();
const int nrtdofs = rtdof_offsets.Last();
MFEM_VERIFY(sc_sol.Size() == nrtdofs, "'sc_sol' has incorrect size");
Vector sol_r;
if (parallel)
{
sol_r.SetSize(nrdofs);
pP->Mult(sc_sol, sol_r);
}
else
{
if (!P)
{
sol_r.SetDataAndSize(sc_sol.GetData(), sc_sol.Size());
}
else
{
sol_r.SetSize(nrdofs);
P->Mult(sc_sol, sol_r);
}
}
if (rdof_offsets.Last() == dof_offsets.Last())
{
sol = sol_r;
return;
}
else
{
sol.SetSize(dof_offsets.Last());
}
Vector lsr; // element (local) sc solution vector
Vector lsi; // element (local) interior solution vector
const int NE = mesh->GetNE();
Array<int> trace_vdofs;
Array<int> vdofs;
Array<int> tr_offsets;
Vector lsol;
for (int iel = 0; iel < NE; iel++)
{
lsol.SetSize(lmat[iel]->Width() + lmat[iel]->Height());
// GetReduceElementIndicesAndOffsets(iel, trace_ldofs, interior_ldofs, tr_offsets);
GetReduceElementVDofs(iel, trace_vdofs);
lsr.SetSize(trace_vdofs.Size());
sol_r.GetSubVector(trace_vdofs, lsr);
// complete the interior dofs
lsi.SetSize(lmat[iel]->Height());
lmat[iel]->Mult(lsr,lsi);
lsi.Neg();
lsi+=*lvec[iel];
Array<int> tr_idx,int_idx,idx_offs;
GetReduceElementIndicesAndOffsets(iel,tr_idx, int_idx, idx_offs);
lsol.SetSubVector(tr_idx,lsr);
lsol.SetSubVector(int_idx,lsi);
GetElementVDofs(iel, vdofs);
sol.SetSubVector(vdofs,lsol);
}
}
BlockStaticCondensation::~BlockStaticCondensation()
{
delete S_e; S_e = nullptr;
delete S; S=nullptr;
delete y; y=nullptr;
if (P) { delete P; } P=nullptr;
if (R) { delete R; } R=nullptr;
if (parallel)
{
delete pS; pS=nullptr;
delete pS_e; pS_e=nullptr;
for (int i = 0; i<rblocks; i++)
{
delete ess_tdofs[i];
}
delete pP; pP=nullptr;
}
for (int i=0; i<lmat.Size(); i++)
{
delete lmat[i]; lmat[i] = nullptr;
delete lvec[i]; lvec[i] = nullptr;
}
}
}
+191
View File
@@ -0,0 +1,191 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_BLOCK_STATIC_CONDENSATION
#define MFEM_BLOCK_STATIC_CONDENSATION
#include "../config/config.hpp"
#include "fespace.hpp"
#ifdef MFEM_USE_MPI
#include "pfespace.hpp"
#endif
namespace mfem
{
class BlockStaticCondensation
{
int height, width;
int nblocks; // original number of blocks
int rblocks; // reduces number of blocks
Mesh * mesh = nullptr;
bool parallel = false;
// original set of Finite Element Spaces
Array<FiniteElementSpace *> fes;
// indicates if the original space is already a trace space
Array<bool> IsTraceSpace;
// New set of "reduced" Finite Element Spaces
// (after static condensation)
Array<FiniteElementSpace *> tr_fes;
Array<int> dof_offsets;
Array<int> tdof_offsets;
Array<int> rdof_offsets;
Array<int> rtdof_offsets;
// Schur complement matrix
// S = A_ii - A_ib (A_bb)^{-1} A_bi.
BlockMatrix * S = nullptr;
BlockMatrix * S_e = nullptr;
BlockVector * y = nullptr;
Array<DenseMatrix * > lmat;
Array<Vector * > lvec;
Array<int> rdof_edof; // Map from reduced dofs to exposed dofs
Array<int> ess_rtdof_list;
BlockMatrix * P = nullptr; // Block Prolongation
BlockMatrix * R = nullptr; // Block Restriction
#ifdef MFEM_USE_MPI
BlockOperator * pS = nullptr;
BlockOperator * pS_e = nullptr;
// Block HypreParMatrix for Prolongation
BlockOperator * pP = nullptr;
#endif
bool Parallel() const { return parallel; }
// tr_idx (trace dofs indices)
// int_idx (interior dof indices)
void GetReduceElementIndicesAndOffsets(int el, Array<int> & tr_idx,
Array<int> & int_idx,
Array<int> & offsets) const;
void GetReduceElementVDofs(int el, Array<int> & rdofs) const;
void GetElementVDofs(int el, Array<int> & vdofs) const;
// S = A_ii - A_ib (A_bb)^{-1} A_bi.
// y = y_i - A_ib (A_bb)^{-1} y_b
void GetLocalShurComplement(int el, const Array<int> & tr_idx,
const Array<int> & int_idx,
const DenseMatrix & elmat, const Vector & elvect,
DenseMatrix & rmat, Vector & rvect);
void ComputeOffsets();
void BuildProlongation();
#ifdef MFEM_USE_MPI
void BuildParallelProlongation();
#endif
// ess_tdof list for each space
Array<Array<int> *> ess_tdofs;
void FillEssTdofLists(const Array<int> & ess_tdof_list);
void ConformingAssemble(int skip_zeros);
/** Restrict a marker Array on the true FE spaces dofs to a marker Array on
the reduced/trace true FE spaces dofs. */
void ConvertMarkerToReducedTrueDofs(Array<int> & tdof_marker,
Array<int> & rtdof_marker);
public:
BlockStaticCondensation(Array<FiniteElementSpace *> & fes_);
~BlockStaticCondensation();
void SetSpaces(Array<FiniteElementSpace*> & fes_);
void Init();
/** Assemble the contribution to the Schur complement from the given
element matrix 'elmat'; save the other blocks internally: A_bb_inv, A_bi,
and A_bi. */
void AssembleReducedSystem(int el, DenseMatrix &elmat,
Vector & elvect);
/// Finalize the construction of the Schur complement matrix.
void Finalize(int skip_zeros = 0);
/// Determine and save internally essential reduced true dofs.
void SetEssentialTrueDofs(const Array<int> &ess_tdof_list);
/// Eliminate the given reduced true dofs from the Schur complement matrix S.
void EliminateReducedTrueDofs(const Array<int> &ess_rtdof_list,
Matrix::DiagonalPolicy dpolicy);
void EliminateReducedTrueDofs(Matrix::DiagonalPolicy dpolicy);
bool HasEliminatedBC() const
{
#ifndef MFEM_USE_MPI
return S_e;
#else
return S_e || pS_e;
#endif
}
/// Return the serial Schur complement matrix.
BlockMatrix &GetMatrix() { return *S; }
/// Return the eliminated part of the serial Schur complement matrix.
BlockMatrix &GetMatrixElim() { return *S_e; }
#ifdef MFEM_USE_MPI
/// Return the parallel Schur complement matrix.
BlockOperator &GetParallelMatrix() { return *pS; }
/// Return the eliminated part of the parallel Schur complement matrix.
BlockOperator &GetParallelMatrixElim() { return *pS_e; }
void ParallelAssemble(BlockMatrix *m);
#endif
void FormSystemMatrix(Operator::DiagonalPolicy diag_policy);
/** Restrict a solution vector on the full FE space dofs to a vector on the
reduced/trace true FE space dofs. */
void ReduceSolution(const Vector &sol, Vector &sc_sol) const;
/** @brief Set the reduced solution `X` and r.h.s `B` vectors from the full
linear system solution `x` and r.h.s. `b` vectors.
This method should be called after the internal reduced essential dofs
have been set using SetEssentialTrueDofs() and both the Schur complement
and its eliminated part have been finalized. */
void ReduceSystem(Vector &x, Vector &X, Vector &B,
int copy_interior = 0) const;
/** Restrict a list of true FE space dofs to a list of reduced/trace true FE
space dofs. */
void ConvertListToReducedTrueDofs(const Array<int> &ess_tdof_list,
Array<int> &ess_rtdof_list) const;
/** Given a solution of the reduced system 'sc_sol' and the RHS 'b' for the
full linear system, compute the solution of the full system 'sol'. */
void ComputeSolution(const Vector &sc_sol, Vector &sol) const;
};
}
#endif
@@ -62,6 +62,20 @@ PAConvectionIntegrator::PAConvectionIntegrator(
#endif
}
MixedPAConvectionIntegrator::MixedPAConvectionIntegrator(
const ConvectionIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::VectorCoefficient *Q,
const double alpha)
{
#ifdef MFEM_USE_CEED
ConvectionOperatorInfo info(fes.GetMesh()->Dimension(), alpha);
Assemble(integ, info, fes, Q);
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
}
MFConvectionIntegrator::MFConvectionIntegrator(
const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
@@ -77,6 +91,20 @@ MFConvectionIntegrator::MFConvectionIntegrator(
#endif
}
MixedMFConvectionIntegrator::MixedMFConvectionIntegrator(
const ConvectionIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::VectorCoefficient *Q,
const double alpha)
{
#ifdef MFEM_USE_CEED
ConvectionOperatorInfo info(fes.GetMesh()->Dimension(), alpha);
Assemble(integ, info, fes, Q);
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
}
} // namespace ceed
} // namespace mfem
+21 -2
View File
@@ -13,6 +13,7 @@
#define MFEM_LIBCEED_CONV_HPP
#include "../../interface/integrator.hpp"
#include "../../interface/mixed_integrator.hpp"
#include "../../../fespace.hpp"
namespace mfem
@@ -26,21 +27,39 @@ class PAConvectionIntegrator : public PAIntegrator
{
public:
PAConvectionIntegrator(const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
const mfem::IntegrationRule &ir,
mfem::VectorCoefficient *Q,
const double alpha);
};
class MixedPAConvectionIntegrator : public MixedIntegrator<PAIntegrator>
{
public:
MixedPAConvectionIntegrator(const ConvectionIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::VectorCoefficient *Q,
const double alpha);
};
/// Represent a ConvectionIntegrator with AssemblyLevel::None using libCEED.
class MFConvectionIntegrator : public MFIntegrator
{
public:
MFConvectionIntegrator(const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
const mfem::IntegrationRule &ir,
mfem::VectorCoefficient *Q,
const double alpha);
};
class MixedMFConvectionIntegrator : public MixedIntegrator<MFIntegrator>
{
public:
MixedMFConvectionIntegrator(const ConvectionIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::VectorCoefficient *Q,
const double alpha);
};
}
}
@@ -60,6 +60,32 @@ PADiffusionIntegrator::PADiffusionIntegrator(
#endif
}
MixedPADiffusionIntegrator::MixedPADiffusionIntegrator(
const DiffusionIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q)
{
#ifdef MFEM_USE_CEED
DiffusionOperatorInfo info(fes.GetMesh()->Dimension());
Assemble(integ, info, fes, Q);
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
}
MixedPADiffusionIntegrator::MixedPADiffusionIntegrator(
const VectorDiffusionIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q)
{
#ifdef MFEM_USE_CEED
DiffusionOperatorInfo info(fes.GetMesh()->Dimension());
Assemble(integ, info, fes, Q);
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
}
MFDiffusionIntegrator::MFDiffusionIntegrator(
const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
@@ -74,6 +100,32 @@ MFDiffusionIntegrator::MFDiffusionIntegrator(
#endif
}
MixedMFDiffusionIntegrator::MixedMFDiffusionIntegrator(
const DiffusionIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q)
{
#ifdef MFEM_USE_CEED
DiffusionOperatorInfo info(fes.GetMesh()->Dimension());
Assemble(integ, info, fes, Q);
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
}
MixedMFDiffusionIntegrator::MixedMFDiffusionIntegrator(
const VectorDiffusionIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q)
{
#ifdef MFEM_USE_CEED
DiffusionOperatorInfo info(fes.GetMesh()->Dimension());
Assemble(integ, info, fes, Q);
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
}
} // namespace ceed
} // namespace mfem
+27 -2
View File
@@ -13,6 +13,7 @@
#define MFEM_LIBCEED_DIFF_HPP
#include "../../interface/integrator.hpp"
#include "../../interface/mixed_integrator.hpp"
#include "../../../fespace.hpp"
namespace mfem
@@ -26,19 +27,43 @@ class PADiffusionIntegrator : public PAIntegrator
{
public:
PADiffusionIntegrator(const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
const mfem::IntegrationRule &ir,
mfem::Coefficient *Q);
};
class MixedPADiffusionIntegrator : public MixedIntegrator<PAIntegrator>
{
public:
MixedPADiffusionIntegrator(const DiffusionIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q);
MixedPADiffusionIntegrator(const VectorDiffusionIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q);
};
/// Represent a DiffusionIntegrator with AssemblyLevel::None using libCEED.
class MFDiffusionIntegrator : public MFIntegrator
{
public:
MFDiffusionIntegrator(const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
const mfem::IntegrationRule &ir,
mfem::Coefficient *Q);
};
class MixedMFDiffusionIntegrator : public MixedIntegrator<MFIntegrator>
{
public:
MixedMFDiffusionIntegrator(const DiffusionIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q);
MixedMFDiffusionIntegrator(const VectorDiffusionIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q);
};
}
}
+48
View File
@@ -59,6 +59,30 @@ PAMassIntegrator::PAMassIntegrator(const mfem::FiniteElementSpace &fes,
#endif
}
MixedPAMassIntegrator::MixedPAMassIntegrator(const MassIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q)
{
#ifdef MFEM_USE_CEED
MassOperatorInfo info;
Assemble(integ, info, fes, Q);
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
}
MixedPAMassIntegrator::MixedPAMassIntegrator(const VectorMassIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q)
{
#ifdef MFEM_USE_CEED
MassOperatorInfo info;
Assemble(integ, info, fes, Q);
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
}
MFMassIntegrator::MFMassIntegrator(const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
mfem::Coefficient *Q)
@@ -72,6 +96,30 @@ MFMassIntegrator::MFMassIntegrator(const mfem::FiniteElementSpace &fes,
#endif
}
MixedMFMassIntegrator::MixedMFMassIntegrator(const MassIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q)
{
#ifdef MFEM_USE_CEED
MassOperatorInfo info;
Assemble(integ, info, fes, Q);
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
}
MixedMFMassIntegrator::MixedMFMassIntegrator(const VectorMassIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q)
{
#ifdef MFEM_USE_CEED
MassOperatorInfo info;
Assemble(integ, info, fes, Q);
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
}
} // namespace ceed
} // namespace mfem
+27 -2
View File
@@ -13,6 +13,7 @@
#define MFEM_LIBCEED_MASS_HPP
#include "../../interface/integrator.hpp"
#include "../../interface/mixed_integrator.hpp"
#include "../../../fespace.hpp"
namespace mfem
@@ -26,19 +27,43 @@ class PAMassIntegrator : public PAIntegrator
{
public:
PAMassIntegrator(const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
const mfem::IntegrationRule &ir,
mfem::Coefficient *Q);
};
class MixedPAMassIntegrator : public MixedIntegrator<PAIntegrator>
{
public:
MixedPAMassIntegrator(const MassIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q);
MixedPAMassIntegrator(const VectorMassIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q);
};
/// Represent a MassIntegrator with AssemblyLevel::None using libCEED.
class MFMassIntegrator : public MFIntegrator
{
public:
MFMassIntegrator(const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
const mfem::IntegrationRule &ir,
mfem::Coefficient *Q);
};
class MixedMFMassIntegrator : public MixedIntegrator<MFIntegrator>
{
public:
MixedMFMassIntegrator(const MassIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q);
MixedMFMassIntegrator(const VectorMassIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q);
};
}
}
@@ -60,6 +60,19 @@ PAVectorConvectionNLFIntegrator::PAVectorConvectionNLFIntegrator(
#endif
}
MixedPAVectorConvectionNLIntegrator::MixedPAVectorConvectionNLIntegrator(
const VectorConvectionNLFIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q)
{
#ifdef MFEM_USE_CEED
NLConvectionOperatorInfo info(fes.GetMesh()->Dimension());
Assemble(integ, info, fes, Q);
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
}
MFVectorConvectionNLFIntegrator::MFVectorConvectionNLFIntegrator(
const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
@@ -74,6 +87,19 @@ MFVectorConvectionNLFIntegrator::MFVectorConvectionNLFIntegrator(
#endif
}
MixedMFVectorConvectionNLIntegrator::MixedMFVectorConvectionNLIntegrator(
const VectorConvectionNLFIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q)
{
#ifdef MFEM_USE_CEED
NLConvectionOperatorInfo info(fes.GetMesh()->Dimension());
Assemble(integ, info, fes, Q);
#else
MFEM_ABORT("MFEM must be built with MFEM_USE_CEED=YES to use libCEED.");
#endif
}
} // namespace ceed
} // namespace mfem
@@ -13,6 +13,7 @@
#define MFEM_LIBCEED_NLCONV_HPP
#include "../../interface/integrator.hpp"
#include "../../interface/mixed_integrator.hpp"
#include "../../../fespace.hpp"
namespace mfem
@@ -31,6 +32,15 @@ public:
mfem::Coefficient *coeff);
};
class MixedPAVectorConvectionNLIntegrator : public MixedIntegrator<PAIntegrator>
{
public:
MixedPAVectorConvectionNLIntegrator(
const VectorConvectionNLFIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q);
};
/** Represent a VectorConvectionNLFIntegrator with AssemblyLevel::None
using libCEED. */
class MFVectorConvectionNLFIntegrator : public MFIntegrator
@@ -41,6 +51,15 @@ public:
mfem::Coefficient *coeff);
};
class MixedMFVectorConvectionNLIntegrator : public MixedIntegrator<MFIntegrator>
{
public:
MixedMFVectorConvectionNLIntegrator(
const VectorConvectionNLFIntegrator &integ,
const mfem::FiniteElementSpace &fes,
mfem::Coefficient *Q);
};
}
}
@@ -327,13 +327,13 @@ CEED_QFUNCTION(f_apply_conv_mf_const)(void *ctx, CeedInt Q,
const CeedScalar A33 = J11 * J22 - J12 * J21;
const CeedScalar w = qw[i] * coeff;
const CeedScalar qd00 = w * A11;
const CeedScalar qd01 = w * A21;
const CeedScalar qd02 = w * A31;
const CeedScalar qd10 = w * A12;
const CeedScalar qd10 = w * A21;
const CeedScalar qd20 = w * A31;
const CeedScalar qd01 = w * A12;
const CeedScalar qd11 = w * A22;
const CeedScalar qd12 = w * A32;
const CeedScalar qd20 = w * A13;
const CeedScalar qd21 = w * A23;
const CeedScalar qd21 = w * A32;
const CeedScalar qd02 = w * A13;
const CeedScalar qd12 = w * A23;
const CeedScalar qd22 = w * A33;
const CeedScalar u0 = u[i + Q * 0];
const CeedScalar u1 = u[i + Q * 1];
@@ -440,13 +440,13 @@ CEED_QFUNCTION(f_apply_conv_mf_quad)(void *ctx, CeedInt Q,
const CeedScalar A33 = J11 * J22 - J12 * J21;
const CeedScalar w = qw[i] * c[i];
const CeedScalar qd00 = w * A11;
const CeedScalar qd01 = w * A21;
const CeedScalar qd02 = w * A31;
const CeedScalar qd10 = w * A12;
const CeedScalar qd10 = w * A21;
const CeedScalar qd20 = w * A31;
const CeedScalar qd01 = w * A12;
const CeedScalar qd11 = w * A22;
const CeedScalar qd12 = w * A32;
const CeedScalar qd20 = w * A13;
const CeedScalar qd21 = w * A23;
const CeedScalar qd21 = w * A32;
const CeedScalar qd02 = w * A13;
const CeedScalar qd12 = w * A23;
const CeedScalar qd22 = w * A33;
const CeedScalar u0 = u[i + Q * 0];
const CeedScalar u1 = u[i + Q * 1];
+37 -15
View File
@@ -36,6 +36,8 @@ static CeedElemTopology GetCeedTopology(Geometry::Type geom)
return CEED_TOPOLOGY_HEX;
case Geometry::PRISM:
return CEED_TOPOLOGY_PRISM;
case Geometry::PYRAMID:
return CEED_TOPOLOGY_PYRAMID;
default:
MFEM_ABORT("This type of element is not supported");
return CEED_TOPOLOGY_PRISM; // Silence warning
@@ -43,11 +45,11 @@ static CeedElemTopology GetCeedTopology(Geometry::Type geom)
}
static void InitNonTensorBasis(const mfem::FiniteElementSpace &fes,
const mfem::FiniteElement &fe,
const mfem::IntegrationRule &ir,
Ceed ceed, CeedBasis *basis)
{
const mfem::DofToQuad &maps = fes.GetFE(0)->
GetDofToQuad(ir,mfem::DofToQuad::FULL);
const mfem::DofToQuad &maps = fe.GetDofToQuad(ir, mfem::DofToQuad::FULL);
mfem::Mesh *mesh = fes.GetMesh();
const int dim = mesh->Dimension();
const int ndofs = maps.ndof;
@@ -62,18 +64,18 @@ static void InitNonTensorBasis(const mfem::FiniteElementSpace &fes,
if (dim>2) { qX(2,i) = ip.z; }
qW(i) = ip.weight;
}
CeedBasisCreateH1(ceed, GetCeedTopology(fes.GetFE(0)->GetGeomType()),
CeedBasisCreateH1(ceed, GetCeedTopology(fe.GetGeomType()),
fes.GetVDim(), ndofs, nqpts,
maps.Bt.GetData(), maps.Gt.GetData(),
qX.GetData(), qW.GetData(), basis);
}
static void InitTensorBasis(const mfem::FiniteElementSpace &fes,
const mfem::FiniteElement &fe,
const mfem::IntegrationRule &ir,
Ceed ceed, CeedBasis *basis)
{
const mfem::DofToQuad &maps =
fes.GetFE(0)->GetDofToQuad(ir, mfem::DofToQuad::TENSOR);
const mfem::DofToQuad &maps = fe.GetDofToQuad(ir, mfem::DofToQuad::TENSOR);
mfem::Mesh *mesh = fes.GetMesh();
const int ndofs = maps.ndof;
const int nqpts = maps.nqpt;
@@ -96,28 +98,30 @@ static void InitTensorBasis(const mfem::FiniteElementSpace &fes,
qW.GetData(), basis);
}
void InitBasis(const FiniteElementSpace &fes,
const IntegrationRule &irm,
Ceed ceed, CeedBasis *basis)
static void InitBasisImpl(const FiniteElementSpace &fes,
const FiniteElement &fe,
const IntegrationRule &ir,
Ceed ceed, CeedBasis *basis)
{
// Check for FES -> basis, restriction in hash tables
const mfem::FiniteElement *fe = fes.GetFE(0);
const int P = fe->GetDof();
const int Q = irm.GetNPoints();
const int P = fe.GetDof();
const int Q = ir.GetNPoints();
const int ncomp = fes.GetVDim();
BasisKey basis_key(&fes, &irm, ncomp, P, Q);
BasisKey basis_key(&fes, &ir, ncomp, P, Q);
auto basis_itr = mfem::internal::ceed_basis_map.find(basis_key);
const bool tensor = dynamic_cast<const mfem::TensorBasisElement *>
(&fe) != nullptr;
// Init or retreive key values
if (basis_itr == mfem::internal::ceed_basis_map.end())
{
if (UsesTensorBasis(fes))
if ( tensor )
{
InitTensorBasis(fes, irm, ceed, basis);
InitTensorBasis(fes, fe, ir, ceed, basis);
}
else
{
InitNonTensorBasis(fes, irm, ceed, basis);
InitNonTensorBasis(fes, fe, ir, ceed, basis);
}
mfem::internal::ceed_basis_map[basis_key] = *basis;
}
@@ -127,6 +131,24 @@ void InitBasis(const FiniteElementSpace &fes,
}
}
void InitBasis(const FiniteElementSpace &fes,
const IntegrationRule &ir,
Ceed ceed, CeedBasis *basis)
{
const mfem::FiniteElement &fe = *fes.GetFE(0);
InitBasisImpl(fes, fe, ir, ceed, basis);
}
void InitBasisWithIndices(const FiniteElementSpace &fes,
const IntegrationRule &ir,
int nelem,
const int* indices,
Ceed ceed, CeedBasis *basis)
{
const mfem::FiniteElement &fe = *fes.GetFE(indices[0]);
InitBasisImpl(fes, fe, ir, ceed, basis);
}
#endif
} // namespace ceed
+18 -3
View File
@@ -22,17 +22,32 @@ namespace ceed
#ifdef MFEM_USE_CEED
/** @brief Initialize a CeedBasis.
/** @brief Initialize a CeedBasis for non-mixed meshes.
@param[in] fes Input finite element space.
@param[in] irm Input integration rule.
@param[in] ir Input integration rule.
@param[in] ceed Input Ceed object.
@param[out] basis The address of the initialized CeedBasis object.
*/
void InitBasis(const FiniteElementSpace &fes,
const IntegrationRule &irm,
const IntegrationRule &ir,
Ceed ceed, CeedBasis *basis);
/** @brief Initialize a CeedBasis for mixed meshes.
@param[in] fes The finite element space.
@param[in] ir is the integration rule for the operator.
@param[in] nelem The number of elements.
@param[in] indices The indices of the elements of same type in the
`FiniteElementSpace`.
@param[in] ceed The Ceed object.
@param[out] basis The `CeedBasis` to initialize. */
void InitBasisWithIndices(const FiniteElementSpace &fes,
const IntegrationRule &ir,
int nelem,
const int* indices,
Ceed ceed, CeedBasis *basis);
#endif
} // namespace ceed
+221 -3
View File
@@ -14,6 +14,7 @@
#ifdef MFEM_USE_CEED
#include "../../../general/forall.hpp"
#include "../../../config/config.hpp"
#include "../../../linalg/vector.hpp"
#include "../../../linalg/dtensor.hpp"
@@ -77,7 +78,14 @@ struct QuadCoefficient : VariableCoefficient
/** @brief Initializes an mfem::ceed::Coefficient @a coeff_ptr from an
mfem::Coefficient @a Q, an mfem::Mesh @a mesh, and an mfem::IntegrationRule
@a ir. */
@a ir.
@param[in] Q is the coefficient from the `Integrator`.
@param[in] mesh is the mesh.
@param[in] ir is the integration rule.
@param[out] coeff_ptr is the structure to store the coefficient for the
`CeedOperator`.
@param[out] ctx is the Context associated to the QFunction. */
template <typename Context>
void InitCoefficient(mfem::Coefficient *Q, mfem::Mesh &mesh,
const mfem::IntegrationRule &ir,
@@ -143,8 +151,15 @@ void InitCoefficient(mfem::Coefficient *Q, mfem::Mesh &mesh,
/** @brief Initializes an mfem::ceed::Coefficient @a coeff_ptr from an
mfem::VectorCoefficient @a Q, an mfem::Mesh @a mesh, and an
mfem::IntegrationRule @a ir. */
mfem::VectorCoefficient @a VQ, an mfem::Mesh @a mesh, and an
mfem::IntegrationRule @a ir.
@param[in] VQ is the vector coefficient from the `Integrator`.
@param[in] mesh is the mesh.
@param[in] ir is the integration rule.
@param[out] coeff_ptr is the structure to store the coefficient for the
`CeedOperator`.
@param[out] ctx is the Context associated to the QFunction. */
template <typename Context>
void InitCoefficient(mfem::VectorCoefficient *VQ, mfem::Mesh &mesh,
const mfem::IntegrationRule &ir,
@@ -214,6 +229,209 @@ void InitCoefficient(mfem::VectorCoefficient *VQ, mfem::Mesh &mesh,
}
}
/** @brief Initializes an mfem::ceed::Coefficient @a coeff_ptr from an
mfem::Coefficient @a Q, an mfem::Mesh @a mesh, and an mfem::IntegrationRule
@a ir for the elements given by the indices @a indices.
@param[in] Q is the coefficient from the `Integrator`.
@param[in] mesh is the mesh.
@param[in] ir is the integration rule.
@param[in] nelem The number of elements.
@param[in] indices The indices of the elements of same type in the
`FiniteElementSpace`.
@param[out] coeff_ptr is the structure to store the coefficient for the
`CeedOperator`.
@param[out] ctx is the Context associated to the QFunction. */
template <typename Context>
void InitCoefficientWithIndices(mfem::Coefficient *Q, mfem::Mesh &mesh,
const mfem::IntegrationRule &ir,
int nelem,
const int* indices,
Coefficient*& coeff_ptr, Context &ctx)
{
if ( Q == nullptr )
{
Coefficient *ceedCoeff = new Coefficient(1);
ctx.coeff = 1.0;
coeff_ptr = ceedCoeff;
}
else if (ConstantCoefficient *const_coeff =
dynamic_cast<ConstantCoefficient*>(Q))
{
Coefficient *ceedCoeff = new Coefficient(1);
ctx.coeff = const_coeff->constant;
coeff_ptr = ceedCoeff;
}
else if (GridFunctionCoefficient* gf_coeff =
dynamic_cast<GridFunctionCoefficient*>(Q))
{
GridCoefficient *ceedCoeff =
new GridCoefficient(*gf_coeff->GetGridFunction());
coeff_ptr = ceedCoeff;
}
else if (QuadratureFunctionCoefficient *cQ =
dynamic_cast<QuadratureFunctionCoefficient*>(Q))
{
QuadCoefficient *ceedCoeff = new QuadCoefficient(1);
const int ne = mesh.GetNE();
const int nq = ir.GetNPoints();
const mfem::QuadratureFunction &qFun = cQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == nq * ne,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
ceedCoeff->coeff.SetSize(nq * nelem);
Memory<int> m_indices((int*)indices, nelem, false);
auto in = Reshape(qFun.Read(), nq, ne);
auto d_indices = Read(m_indices, nelem);
auto out = Reshape(ceedCoeff->coeff.Write(), nq, nelem);
MFEM_FORALL(i, nelem * nq,
{
const int q = i%nq;
const int sub_e = i/nq;
const int e = d_indices[sub_e];
out(q, sub_e) = in(q, e);
});
m_indices.DeleteDevice();
InitVector(ceedCoeff->coeff, ceedCoeff->coeffVector);
coeff_ptr = ceedCoeff;
}
else
{
QuadCoefficient *ceedCoeff = new QuadCoefficient(1);
const int nq = ir.GetNPoints();
ceedCoeff->coeff.SetSize(nq * nelem);
auto C = Reshape(ceedCoeff->coeff.HostWrite(), nq, nelem);
for (int i = 0; i < nelem; ++i)
{
const int e = indices[i];
mfem::ElementTransformation &T = *mesh.GetElementTransformation(e);
for (int q = 0; q < nq; ++q)
{
C(q, i) = Q->Eval(T, ir.IntPoint(q));
}
}
InitVector(ceedCoeff->coeff, ceedCoeff->coeffVector);
coeff_ptr = ceedCoeff;
}
}
/** @brief Initializes an mfem::ceed::Coefficient @a coeff_ptr from an
mfem::VectorCoefficient @a Q, an mfem::Mesh @a mesh, and an
mfem::IntegrationRule @a ir for the elements given by the indices @a indices.
@param[in] VQ is the vector coefficient from the `Integrator`.
@param[in] mesh is the mesh.
@param[in] ir is the integration rule.
@param[in] nelem The number of elements.
@param[in] indices The indices of the elements of same type in the
`FiniteElementSpace`.
@param[out] coeff_ptr is the structure to store the coefficient for the
`CeedOperator`.
@param[out] ctx is the Context associated to the QFunction. */
template <typename Context>
void InitCoefficientWithIndices(mfem::VectorCoefficient *VQ, mfem::Mesh &mesh,
const mfem::IntegrationRule &ir,
int nelem,
const int* indices,
Coefficient *&coeff_ptr, Context &ctx)
{
if (VectorConstantCoefficient *const_coeff =
dynamic_cast<VectorConstantCoefficient*>(VQ))
{
const int vdim = const_coeff->GetVDim();
const mfem::Vector &val = const_coeff->GetVec();
Coefficient *ceedCoeff = new Coefficient(vdim);
for (int i = 0; i < vdim; i++)
{
ctx.coeff[i] = val[i];
}
coeff_ptr = ceedCoeff;
}
else if (VectorGridFunctionCoefficient* vgf_coeff =
dynamic_cast<VectorGridFunctionCoefficient*>(VQ))
{
GridCoefficient *ceedCoeff =
new GridCoefficient(*vgf_coeff->GetGridFunction());
coeff_ptr = ceedCoeff;
}
else if (VectorQuadratureFunctionCoefficient *cQ =
dynamic_cast<VectorQuadratureFunctionCoefficient*>(VQ))
{
QuadCoefficient *ceedCoeff = new QuadCoefficient(cQ->GetVDim());
const int dim = mesh.Dimension();
const int ne = mesh.GetNE();
const int nq = ir.GetNPoints();
const mfem::QuadratureFunction &qFun = cQ->GetQuadFunction();
MFEM_VERIFY(qFun.Size() == dim * nq * ne,
"Incompatible QuadratureFunction dimension \n");
MFEM_VERIFY(&ir == &qFun.GetSpace()->GetElementIntRule(0),
"IntegrationRule used within integrator and in"
" QuadratureFunction appear to be different");
ceedCoeff->coeff.SetSize(dim * nq * nelem);
Memory<int> m_indices((int*)indices, nelem, false);
auto in = Reshape(qFun.Read(), dim, nq, ne);
auto d_indices = Read(m_indices, nelem);
auto out = Reshape(ceedCoeff->coeff.Write(), dim, nq, nelem);
MFEM_FORALL(i, nelem * nq,
{
const int q = i%nq;
const int sub_e = i/nq;
const int e = d_indices[sub_e];
for (int d = 0; d < dim; d++)
{
out(d, q, sub_e) = in(d, q, e);
}
});
m_indices.DeleteDevice();
InitVector(ceedCoeff->coeff, ceedCoeff->coeffVector);
coeff_ptr = ceedCoeff;
}
else
{
const int dim = mesh.Dimension();
QuadCoefficient *ceedCoeff = new QuadCoefficient(dim);
const int nq = ir.GetNPoints();
ceedCoeff->coeff.SetSize(dim * nq * nelem);
auto C = Reshape(ceedCoeff->coeff.HostWrite(), dim, nq, nelem);
mfem::DenseMatrix Q_ir;
for (int i = 0; i < nelem; ++i)
{
const int e = indices[i];
mfem::ElementTransformation &T = *mesh.GetElementTransformation(e);
VQ->Eval(Q_ir, T, ir);
for (int q = 0; q < nq; ++q)
{
for (int d = 0; d < dim; ++d)
{
C(d, q, i) = Q_ir(d, q);
}
}
}
InitVector(ceedCoeff->coeff, ceedCoeff->coeffVector);
coeff_ptr = ceedCoeff;
}
}
template <typename Coeff, typename Context>
void InitCoefficient(Coeff *Q, mfem::Mesh &mesh,
const mfem::IntegrationRule &ir, int nelem,
const int* indices, Coefficient *&coeff_ptr, Context &ctx)
{
if (indices)
{
InitCoefficientWithIndices(Q, mesh, ir, nelem, indices, coeff_ptr, ctx);
}
else
{
InitCoefficient(Q, mesh, ir, coeff_ptr, ctx);
}
}
} // namespace ceed
} // namespace mfem
+182 -83
View File
@@ -18,6 +18,7 @@
#include "operator.hpp"
#include "coefficient.hpp"
#include "restriction.hpp"
#include "util.hpp"
#include "ceed.hpp"
namespace mfem
@@ -86,6 +87,7 @@ protected:
CeedQFunctionContext build_ctx;
CeedOperator build_oper;
public:
PAIntegrator()
: Operator(),
trial_basis(nullptr), test_basis(nullptr), mesh_basis(nullptr),
@@ -95,23 +97,51 @@ protected:
qdata(nullptr), coeff(nullptr), build_ctx(nullptr), build_oper(nullptr)
{ }
public:
/** This method assembles the PAIntegrator.
/** @brief This method assembles the `PAIntegrator` with the given
`CeedOperatorInfo` @a info, an `mfem::FiniteElementSpace` @a fes, an
`mfem::IntegrationRule` @a ir, and `mfem::Coefficient` or
`mfem::VectorCoefficient` @a Q.
The `CeedOperatorInfo` type is expected to inherit from `OperatorInfo`,
and contain a `Context` type relevant to the qFunctions.
@param[in] info the `CeedOperatorInfo` describing the `CeedOperator`,
the `CeedOperatorInfo` type is expected to inherit from
`OperatorInfo` and contain a `Context` type relevant to
the qFunctions.
@param[in] fes the `FiniteElementSpace` for the form,
@param[in] ir the `IntegrationRule` for the numerical integration,
@param[in] Q `Coefficient` or `VectorCoefficient`. */
@param[in] info is the structure describing the CeedOperator to assemble.
@param[in] fes is the finite element space.
@param[in] ir is the integration rule for the operator.
@param[in] Q is the coefficient from the `Integrator`. */
template <typename CeedOperatorInfo, typename CoeffType>
void Assemble(CeedOperatorInfo &info,
const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
const mfem::IntegrationRule &ir,
CoeffType *Q)
{
Assemble(info, fes, fes, irm, Q);
Assemble(info, fes, ir, fes.GetNE(), nullptr, Q);
}
/** @brief This method assembles the `PAIntegrator` with the given
`CeedOperatorInfo` @a info, an `mfem::FiniteElementSpace` @a fes, an
`mfem::IntegrationRule` @a ir, and `mfem::Coefficient` or
`mfem::VectorCoefficient` @a Q for the elements given by the indices
@a indices.
The `CeedOperatorInfo` type is expected to inherit from `OperatorInfo`,
and contain a `Context` type relevant to the qFunctions.
@param[in] info is the structure describing the CeedOperator to assemble.
@param[in] fes is the finite element space.
@param[in] ir is the integration rule for the operator.
@param[in] nelem The number of elements.
@param[in] indices The indices of the elements of same type in the
`FiniteElementSpace`. If `indices == nullptr`, assumes
that the `FiniteElementSpace` is not mixed.
@param[in] Q is the coefficient from the `Integrator`. */
template <typename CeedOperatorInfo, typename CoeffType>
void Assemble(CeedOperatorInfo &info,
const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &ir,
int nelem,
const int* indices,
CoeffType *Q)
{
Assemble(info, fes, fes, ir, nelem, indices, Q);
}
/** This method assembles the PAIntegrator for mixed forms.
@@ -128,12 +158,40 @@ public:
void Assemble(CeedOperatorInfo &info,
const mfem::FiniteElementSpace &trial_fes,
const mfem::FiniteElementSpace &test_fes,
const mfem::IntegrationRule &irm,
const mfem::IntegrationRule &ir,
CoeffType *Q)
{
Assemble(info, trial_fes, test_fes, ir, trial_fes.GetNE(), nullptr, Q);
}
/** This method assembles the PAIntegrator for mixed forms on mixed meshes.
@param[in] info the `CeedOperatorInfo` describing the `CeedOperator`,
the `CeedOperatorInfo` type is expected to inherit from
`OperatorInfo` and contain a `Context` type relevant to
the qFunctions.
@param[in] trial_fes the trial `FiniteElementSpace` for the form,
@param[in] test_fes the test `FiniteElementSpace` for the form,
@param[in] ir the `IntegrationRule` for the numerical integration,
@param[in] nelem The number of elements,
@param[in] indices The indices of the elements of same type in the
`FiniteElementSpace`. If `indices == nullptr`, assumes
that the `FiniteElementSpace` is not mixed,
@param[in] Q `Coefficient` or `VectorCoefficient`. */
template <typename CeedOperatorInfo, typename CoeffType>
void Assemble(CeedOperatorInfo &info,
const mfem::FiniteElementSpace &trial_fes,
const mfem::FiniteElementSpace &test_fes,
const mfem::IntegrationRule &ir,
int nelem,
const int* indices,
CoeffType *Q)
{
Ceed ceed(internal::ceed);
mfem::Mesh &mesh = *trial_fes.GetMesh();
InitCoefficient(Q, mesh, irm, coeff, info.ctx);
MFEM_VERIFY(!(!indices && mesh.GetNumGeometries(mesh.Dimension()) > 1),
"Use ceed::MixedIntegrator on mixed meshes.");
InitCoefficient(Q, mesh, ir, nelem, indices, coeff, info.ctx);
bool const_coeff = coeff->IsConstant();
std::string build_func = const_coeff ? info.build_func_const
: info.build_func_quad;
@@ -145,7 +203,6 @@ public:
info.trial_op,
info.test_op
};
CeedInt nqpts, nelem = mesh.GetNE();
CeedInt dim = mesh.SpaceDimension();
CeedInt trial_vdim = trial_fes.GetVDim();
CeedInt test_vdim = test_fes.GetVDim();
@@ -153,23 +210,23 @@ public:
mesh.EnsureNodes();
if ( &trial_fes == &test_fes )
{
InitBasisAndRestriction(trial_fes, irm, ceed,
&trial_basis, &trial_restr);
InitBasisAndRestriction(trial_fes, ir, nelem, indices,
ceed, &trial_basis, &trial_restr);
test_basis = trial_basis;
test_restr = trial_restr;
}
else
{
InitBasisAndRestriction(trial_fes, irm, ceed,
&trial_basis, &trial_restr);
InitBasisAndRestriction(test_fes, irm, ceed,
&test_basis, &test_restr);
InitBasisAndRestriction(trial_fes, ir, nelem, indices,
ceed, &trial_basis, &trial_restr);
InitBasisAndRestriction(test_fes, ir, nelem, indices,
ceed, &test_basis, &test_restr);
}
const mfem::FiniteElementSpace *mesh_fes = mesh.GetNodalFESpace();
MFEM_VERIFY(mesh_fes, "the Mesh has no nodal FE space");
InitBasisAndRestriction(*mesh_fes, irm, ceed, &mesh_basis,
&mesh_restr);
InitBasisAndRestriction(*mesh_fes, ir, nelem, indices,
ceed, &mesh_basis, &mesh_restr);
CeedInt trial_nqpts, test_nqpts;
CeedBasisGetNumQuadraturePoints(trial_basis, &trial_nqpts);
@@ -177,7 +234,7 @@ public:
MFEM_VERIFY(trial_nqpts == test_nqpts,
"Trial and test basis must have the same number of quadrature"
" points.");
nqpts = trial_nqpts;
CeedInt nqpts = trial_nqpts;
const int qdatasize = op.qdatasize;
InitStridedRestriction(*mesh_fes, nelem, nqpts, qdatasize,
@@ -221,8 +278,10 @@ public:
CeedOperatorCreate(ceed, build_qfunc, NULL, NULL, &build_oper);
if (GridCoefficient *gridCoeff = dynamic_cast<GridCoefficient*>(coeff))
{
InitBasisAndRestriction(*gridCoeff->gf.FESpace(), irm, ceed,
&gridCoeff->basis, &gridCoeff->restr);
InitBasisAndRestriction(*gridCoeff->gf.FESpace(), ir,
nelem, indices, ceed,
&gridCoeff->basis,
&gridCoeff->restr);
CeedOperatorSetField(build_oper, "coeff", gridCoeff->restr,
gridCoeff->basis, gridCoeff->coeffVector);
}
@@ -231,7 +290,8 @@ public:
{
const int ncomp = quadCoeff->ncomp;
CeedInt strides[3] = {ncomp, 1, ncomp*nqpts};
InitStridedRestriction(*mesh_fes, nelem, nqpts, ncomp, strides,
InitStridedRestriction(*mesh.GetNodalFESpace(),
nelem, nqpts, ncomp, strides,
&quadCoeff->restr);
CeedOperatorSetField(build_oper, "coeff", quadCoeff->restr,
CEED_BASIS_COLLOCATED, quadCoeff->coeffVector);
@@ -254,22 +314,17 @@ public:
switch (op.trial_op)
{
case EvalMode::None:
CeedQFunctionAddInput(apply_qfunc, "u", trial_vdim,
CEED_EVAL_NONE);
CeedQFunctionAddInput(apply_qfunc, "u", trial_vdim, CEED_EVAL_NONE);
break;
case EvalMode::Interp:
CeedQFunctionAddInput(apply_qfunc, "u", trial_vdim,
CEED_EVAL_INTERP);
CeedQFunctionAddInput(apply_qfunc, "u", trial_vdim, CEED_EVAL_INTERP);
break;
case EvalMode::Grad:
CeedQFunctionAddInput(apply_qfunc, "gu", trial_vdim*dim,
CEED_EVAL_GRAD);
CeedQFunctionAddInput(apply_qfunc, "gu", trial_vdim*dim, CEED_EVAL_GRAD);
break;
case EvalMode::InterpAndGrad:
CeedQFunctionAddInput(apply_qfunc, "u", trial_vdim,
CEED_EVAL_INTERP);
CeedQFunctionAddInput(apply_qfunc, "gu", trial_vdim*dim,
CEED_EVAL_GRAD);
CeedQFunctionAddInput(apply_qfunc, "u", trial_vdim, CEED_EVAL_INTERP);
CeedQFunctionAddInput(apply_qfunc, "gu", trial_vdim*dim, CEED_EVAL_GRAD);
break;
}
// qdata
@@ -278,22 +333,17 @@ public:
switch (op.test_op)
{
case EvalMode::None:
CeedQFunctionAddOutput(apply_qfunc, "v", test_vdim,
CEED_EVAL_NONE);
CeedQFunctionAddOutput(apply_qfunc, "v", test_vdim, CEED_EVAL_NONE);
break;
case EvalMode::Interp:
CeedQFunctionAddOutput(apply_qfunc, "v", test_vdim,
CEED_EVAL_INTERP);
CeedQFunctionAddOutput(apply_qfunc, "v", test_vdim, CEED_EVAL_INTERP);
break;
case EvalMode::Grad:
CeedQFunctionAddOutput(apply_qfunc, "gv", test_vdim*dim,
CEED_EVAL_GRAD);
CeedQFunctionAddOutput(apply_qfunc, "gv", test_vdim*dim, CEED_EVAL_GRAD);
break;
case EvalMode::InterpAndGrad:
CeedQFunctionAddOutput(apply_qfunc, "v", test_vdim,
CEED_EVAL_INTERP);
CeedQFunctionAddOutput(apply_qfunc, "gv", test_vdim*dim,
CEED_EVAL_GRAD);
CeedQFunctionAddOutput(apply_qfunc, "v", test_vdim, CEED_EVAL_INTERP);
CeedQFunctionAddOutput(apply_qfunc, "gv", test_vdim*dim, CEED_EVAL_GRAD);
break;
}
CeedQFunctionSetContext(apply_qfunc, build_ctx);
@@ -308,18 +358,14 @@ public:
CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
break;
case EvalMode::Interp:
CeedOperatorSetField(oper, "u", trial_restr, trial_basis,
CEED_VECTOR_ACTIVE);
CeedOperatorSetField(oper, "u", trial_restr, trial_basis, CEED_VECTOR_ACTIVE);
break;
case EvalMode::Grad:
CeedOperatorSetField(oper, "gu", trial_restr, trial_basis,
CEED_VECTOR_ACTIVE);
CeedOperatorSetField(oper, "gu", trial_restr, trial_basis, CEED_VECTOR_ACTIVE);
break;
case EvalMode::InterpAndGrad:
CeedOperatorSetField(oper, "u", trial_restr, trial_basis,
CEED_VECTOR_ACTIVE);
CeedOperatorSetField(oper, "gu", trial_restr, trial_basis,
CEED_VECTOR_ACTIVE);
CeedOperatorSetField(oper, "u", trial_restr, trial_basis, CEED_VECTOR_ACTIVE);
CeedOperatorSetField(oper, "gu", trial_restr, trial_basis, CEED_VECTOR_ACTIVE);
break;
}
// qdata
@@ -333,18 +379,14 @@ public:
CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
break;
case EvalMode::Interp:
CeedOperatorSetField(oper, "v", test_restr, test_basis,
CEED_VECTOR_ACTIVE);
CeedOperatorSetField(oper, "v", test_restr, test_basis, CEED_VECTOR_ACTIVE);
break;
case EvalMode::Grad:
CeedOperatorSetField(oper, "gv", test_restr, test_basis,
CEED_VECTOR_ACTIVE);
CeedOperatorSetField(oper, "gv", test_restr, test_basis, CEED_VECTOR_ACTIVE);
break;
case EvalMode::InterpAndGrad:
CeedOperatorSetField(oper, "v", test_restr, test_basis,
CEED_VECTOR_ACTIVE);
CeedOperatorSetField(oper, "gv", test_restr, test_basis,
CEED_VECTOR_ACTIVE);
CeedOperatorSetField(oper, "v", test_restr, test_basis, CEED_VECTOR_ACTIVE);
CeedOperatorSetField(oper, "gv", test_restr, test_basis, CEED_VECTOR_ACTIVE);
break;
}
@@ -402,6 +444,7 @@ protected:
Coefficient *coeff;
CeedQFunctionContext build_ctx;
public:
MFIntegrator()
: Operator(),
trial_basis(nullptr), test_basis(nullptr), mesh_basis(nullptr),
@@ -410,23 +453,51 @@ protected:
apply_qfunc(nullptr), node_coords(nullptr),
qdata(nullptr), coeff(nullptr), build_ctx(nullptr) { }
public:
/** This method assembles the MFIntegrator.
/** @brief This method assembles the `MFIntegrator` with the given
`CeedOperatorInfo` @a info, an `mfem::FiniteElementSpace` @a fes, an
`mfem::IntegrationRule` @a ir, and `mfem::Coefficient` or
`mfem::VectorCoefficient` @a Q.
The `CeedOperatorInfo` type is expected to inherit from `OperatorInfo`,
and contain a `Context` type relevant to the qFunctions.
@param[in] info the `CeedOperatorInfo` describing the `CeedOperator`,
the `CeedOperatorInfo` type is expected to inherit from
`OperatorInfo` and contain a `Context` type relevant to
the qFunctions.
@param[in] fes the `FiniteElementSpace` for the form,
@param[in] ir the `IntegrationRule` for the numerical integration,
@param[in] Q `Coefficient` or `VectorCoefficient`. */
@param[in] info is the structure describing the CeedOperator to assemble.
@param[in] fes is the finite element space.
@param[in] ir is the integration rule for the operator.
@param[in] Q is the coefficient from the `Integrator`. */
template <typename CeedOperatorInfo, typename CoeffType>
void Assemble(CeedOperatorInfo &info,
const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &irm,
const mfem::IntegrationRule &ir,
CoeffType *Q)
{
Assemble(info, fes, fes, irm, Q);
Assemble(info, fes, ir, fes.GetNE(), nullptr, Q);
}
/** @brief This method assembles the `MFIntegrator` with the given
`CeedOperatorInfo` @a info, an `mfem::FiniteElementSpace` @a fes, an
`mfem::IntegrationRule` @a ir, and `mfem::Coefficient` or
`mfem::VectorCoefficient` @a Q for the elements given by the indices
@a indices.
The `CeedOperatorInfo` type is expected to inherit from `OperatorInfo`,
and contain a `Context` type relevant to the qFunctions.
@param[in] info is the structure describing the CeedOperator to assemble.
@param[in] fes is the finite element space.
@param[in] ir is the integration rule for the operator.
@param[in] nelem The number of elements.
@param[in] indices The indices of the elements of same type in the
`FiniteElementSpace`. If `indices == nullptr`, assumes
that the `FiniteElementSpace` is not mixed.
@param[in] Q is the coefficient from the `Integrator`. */
template <typename CeedOperatorInfo, typename CoeffType>
void Assemble(CeedOperatorInfo &info,
const mfem::FiniteElementSpace &fes,
const mfem::IntegrationRule &ir,
int nelem,
const int* indices,
CoeffType *Q)
{
Assemble(info, fes, fes, ir, nelem, indices, Q);
}
/** This method assembles the MFIntegrator for mixed forms.
@@ -443,12 +514,40 @@ public:
void Assemble(CeedOperatorInfo &info,
const mfem::FiniteElementSpace &trial_fes,
const mfem::FiniteElementSpace &test_fes,
const mfem::IntegrationRule &irm,
const mfem::IntegrationRule &ir,
CoeffType *Q)
{
Assemble(info, trial_fes, test_fes, ir, trial_fes.GetNE(), nullptr, Q);
}
/** This method assembles the MFIntegrator for mixed forms.
@param[in] info the `CeedOperatorInfo` describing the `CeedOperator`,
the `CeedOperatorInfo` type is expected to inherit from
`OperatorInfo` and contain a `Context` type relevant to
the qFunctions.
@param[in] trial_fes the trial `FiniteElementSpace` for the form,
@param[in] test_fes the test `FiniteElementSpace` for the form,
@param[in] ir the `IntegrationRule` for the numerical integration,
@param[in] nelem The number of elements,
@param[in] indices The indices of the elements of same type in the
`FiniteElementSpace`. If `indices == nullptr`, assumes
that the `FiniteElementSpace` is not mixed,
@param[in] Q `Coefficient` or `VectorCoefficient`. */
template <typename CeedOperatorInfo, typename CoeffType>
void Assemble(CeedOperatorInfo &info,
const mfem::FiniteElementSpace &trial_fes,
const mfem::FiniteElementSpace &test_fes,
const mfem::IntegrationRule &ir,
int nelem,
const int* indices,
CoeffType *Q)
{
Ceed ceed(internal::ceed);
Mesh &mesh = *trial_fes.GetMesh();
InitCoefficient(Q, mesh, irm, coeff, info.ctx);
MFEM_VERIFY(!(!indices && mesh.GetNumGeometries(mesh.Dimension()) > 1),
"Use ceed::MixedIntegrator on mixed meshes.");
InitCoefficient(Q, mesh, ir, nelem, indices, coeff, info.ctx);
bool const_coeff = coeff->IsConstant();
std::string apply_func = const_coeff ? info.apply_func_mf_const
: info.apply_func_mf_quad;
@@ -459,7 +558,7 @@ public:
info.trial_op,
info.test_op
};
CeedInt nqpts, nelem = mesh.GetNE();
CeedInt dim = mesh.SpaceDimension();
CeedInt trial_vdim = trial_fes.GetVDim();
CeedInt test_vdim = test_fes.GetVDim();
@@ -467,22 +566,22 @@ public:
mesh.EnsureNodes();
if ( &trial_fes == &test_fes )
{
InitBasisAndRestriction(trial_fes, irm, ceed,
InitBasisAndRestriction(trial_fes, ir, nelem, indices, ceed,
&trial_basis, &trial_restr);
test_basis = trial_basis;
test_restr = trial_restr;
}
else
{
InitBasisAndRestriction(trial_fes, irm, ceed,
InitBasisAndRestriction(trial_fes, ir, nelem, indices, ceed,
&trial_basis, &trial_restr);
InitBasisAndRestriction(test_fes, irm, ceed,
InitBasisAndRestriction(test_fes, ir, nelem, indices, ceed,
&test_basis, &test_restr);
}
const mfem::FiniteElementSpace *mesh_fes = mesh.GetNodalFESpace();
MFEM_VERIFY(mesh_fes, "the Mesh has no nodal FE space");
InitBasisAndRestriction(*mesh_fes, irm, ceed, &mesh_basis,
InitBasisAndRestriction(*mesh_fes, ir, nelem, indices, ceed, &mesh_basis,
&mesh_restr);
CeedInt trial_nqpts, test_nqpts;
@@ -491,7 +590,7 @@ public:
MFEM_VERIFY(trial_nqpts == test_nqpts,
"Trial and test basis must have the same number of quadrature"
" points.");
nqpts = trial_nqpts;
CeedInt nqpts = trial_nqpts;
InitVector(*mesh.GetNodes(), node_coords);
@@ -572,8 +671,8 @@ public:
// coefficient
if (GridCoefficient *gridCoeff = dynamic_cast<GridCoefficient*>(coeff))
{
InitBasisAndRestriction(*gridCoeff->gf.FESpace(), irm, ceed,
&gridCoeff->basis, &gridCoeff->restr);
InitBasisAndRestriction(*gridCoeff->gf.FESpace(), ir, nelem, indices,
ceed, &gridCoeff->basis, &gridCoeff->restr);
CeedOperatorSetField(oper, "coeff", gridCoeff->restr,
gridCoeff->basis, gridCoeff->coeffVector);
}
+2
View File
@@ -22,6 +22,8 @@
#include "coefficient.hpp"
// PA or MF Operator using libCEED.
#include "integrator.hpp"
// PA Operator supporting mixed finite element spaces.
#include "mixed_integrator.hpp"
// Utility functions
#include "util.hpp"
// Wrapper to include <ceed.h>
+126
View File
@@ -0,0 +1,126 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_LIBCEED_MIXED_INTEGRATOR
#define MFEM_LIBCEED_MIXED_INTEGRATOR
#include "ceed.hpp"
#include "integrator.hpp"
#include <unordered_map>
namespace mfem
{
namespace ceed
{
/** @brief This class wraps a `ceed::PAIntegrator` or `ceed::MFIntegrator` to
support mixed finite element spaces. */
template <typename CeedInteg>
class MixedIntegrator : public ceed::Operator
{
#ifdef MFEM_USE_CEED
using ElementKey = std::pair<int, int>; //< Element::Type, Order >
struct key_hash
{
std::size_t operator()(const ElementKey& k) const
{
return k.first + 2 * k.second;
}
};
using ElementsMap = std::unordered_map<const ElementKey, int*, key_hash>;
std::vector<CeedInteg*> sub_ops;
public:
template <typename Integrator, typename CeedOperatorInfo, typename CoeffType>
void Assemble(const Integrator &integ,
CeedOperatorInfo &info,
const mfem::FiniteElementSpace &fes,
CoeffType *Q)
{
ElementsMap count;
ElementsMap element_indices;
ElementsMap offsets;
// Count the number of elements of each type
for (int i = 0; i < fes.GetNE(); i++)
{
ElementKey key(fes.GetElementType(i), fes.GetElementOrder(i));
auto value = count.find(key);
if (value == count.end())
{
count[key] = new int(1);
}
else
{
(*value->second)++;
}
}
// Initialization of the arrays
for ( const auto& value : count )
{
element_indices[value.first] = new int[*value.second];
offsets[value.first] = new int(0);
}
// Populates the indices arrays for each element type
for (int i = 0; i < fes.GetNE(); i++)
{
ElementKey key(fes.GetElementType(i), fes.GetElementOrder(i));
int &offset = *(offsets[key]);
int* indices_array = element_indices[key];
indices_array[offset] = i;
offset++;
}
// Create composite CeedOperator
CeedCompositeOperatorCreate(internal::ceed, &oper);
// Create each sub-CeedOperator
sub_ops.reserve(element_indices.size());
for (const auto& value : element_indices)
{
const int* indices = value.second;
const int first_index = indices[0];
const mfem::FiniteElement &el = *fes.GetFE(first_index);
auto &T = *fes.GetMesh()->GetElementTransformation(first_index);
MFEM_ASSERT(!integ.GetIntegrationRule(),
"Mixed mesh integrators should not have an"
" IntegrationRule.");
const IntegrationRule &ir = GetRule(integ, el, el, T);
auto sub_op = new CeedInteg();
int nelem = *count[value.first];
sub_op->Assemble(info, fes, ir, nelem, indices, Q);
sub_ops.push_back(sub_op);
CeedCompositeOperatorAddSub(oper, sub_op->GetCeedOperator());
}
const int ndofs = fes.GetVDim() * fes.GetNDofs();
CeedVectorCreate(internal::ceed, ndofs, &u);
CeedVectorCreate(internal::ceed, ndofs, &v);
}
virtual ~MixedIntegrator()
{
for (auto sub_op : sub_ops)
{
delete sub_op;
}
}
#endif
};
} // namespace ceed
} // namespace mfem
#endif // MFEM_LIBCEED_MIXED_INTEGRATOR
+195 -56
View File
@@ -20,8 +20,8 @@ namespace ceed
#ifdef MFEM_USE_CEED
static void InitNonTensorRestriction(const mfem::FiniteElementSpace &fes,
Ceed ceed, CeedElemRestriction *restr)
static void InitNativeRestr(const mfem::FiniteElementSpace &fes,
Ceed ceed, CeedElemRestriction *restr)
{
const mfem::FiniteElement *fe = fes.GetFE(0);
const int P = fe->GetDof();
@@ -31,77 +31,173 @@ static void InitNonTensorRestriction(const mfem::FiniteElementSpace &fes,
const mfem::TensorBasisElement * tfe =
dynamic_cast<const mfem::TensorBasisElement *>(fe);
const int stride = compstride == 1 ? fes.GetVDim() : 1;
if (tfe) // Lexicographic ordering using dof_map
const mfem::Array<int>& dof_map = tfe->GetDofMap();
for (int i = 0; i < fes.GetNE(); i++)
{
const mfem::Array<int>& dof_map = tfe->GetDofMap();
for (int i = 0; i < fes.GetNE(); i++)
const int el_offset = P * i;
for (int j = 0; j < P; j++)
{
const int el_offset = P * i;
for (int j = 0; j < P; j++)
{
tp_el_dof[j+el_offset] = stride*el_dof.GetJ()[dof_map[j]+el_offset];
}
}
}
else // Native ordering
{
for (int e = 0; e < fes.GetNE(); e++)
{
for (int i = 0; i < P; i++)
{
tp_el_dof[i + e*P] = stride*el_dof.GetJ()[i + e*P];
}
tp_el_dof[j+el_offset] = stride*el_dof.GetJ()[dof_map[j]+el_offset];
}
}
CeedElemRestrictionCreate(ceed, fes.GetNE(), P, fes.GetVDim(),
compstride, (fes.GetVDim())*(fes.GetNDofs()),
CEED_MEM_HOST, CEED_COPY_VALUES,
tp_el_dof.GetData(), restr);
}
// TODO fuse Tensor and NonTensor Restriction
void InitTensorRestriction(const mfem::FiniteElementSpace &fes,
Ceed ceed, CeedElemRestriction *restr)
static void InitLexicoRestr(const mfem::FiniteElementSpace &fes,
Ceed ceed, CeedElemRestriction *restr)
{
const mfem::FiniteElement *fe = fes.GetFE(0);
const int P = fe->GetDof();
CeedInt compstride = fes.GetOrdering()==Ordering::byVDIM ? 1 : fes.GetNDofs();
const mfem::Table &el_dof = fes.GetElementToDofTable();
mfem::Array<int> tp_el_dof(el_dof.Size_of_connections());
const int stride = compstride == 1 ? fes.GetVDim() : 1;
for (int e = 0; e < fes.GetNE(); e++)
{
for (int i = 0; i < P; i++)
{
tp_el_dof[i + e*P] = stride*el_dof.GetJ()[i + e*P];
}
}
CeedElemRestrictionCreate(ceed, fes.GetNE(), P, fes.GetVDim(),
compstride, (fes.GetVDim())*(fes.GetNDofs()),
CEED_MEM_HOST, CEED_COPY_VALUES,
tp_el_dof.GetData(), restr);
}
static void InitRestrictionImpl(const mfem::FiniteElementSpace &fes,
Ceed ceed, CeedElemRestriction *restr)
{
const mfem::FiniteElement *fe = fes.GetFE(0);
const mfem::TensorBasisElement * tfe =
dynamic_cast<const mfem::TensorBasisElement *>(fe);
MFEM_VERIFY(tfe, "invalid FE");
if ( tfe && tfe->GetDofMap().Size()>0 ) // Native ordering using dof_map
{
InitNativeRestr(fes, ceed, restr);
}
else // Lexicographic ordering
{
InitLexicoRestr(fes, ceed, restr);
}
}
static void InitNativeRestrWithIndices(
const mfem::FiniteElementSpace &fes,
int nelem,
const int* indices,
Ceed ceed, CeedElemRestriction *restr)
{
const mfem::FiniteElement *fe = fes.GetFE(indices[0]);
const int P = fe->GetDof();
CeedInt compstride = fes.GetOrdering()==Ordering::byVDIM ? 1 : fes.GetNDofs();
mfem::Array<int> tp_el_dof(nelem*P);
const mfem::TensorBasisElement * tfe =
dynamic_cast<const mfem::TensorBasisElement *>(fe);
Array<int> dofs;
const int stride = compstride == 1 ? fes.GetVDim() : 1;
const mfem::Array<int>& dof_map = tfe->GetDofMap();
CeedInt compstride = fes.GetOrdering()==Ordering::byVDIM ? 1 : fes.GetNDofs();
const mfem::Table &el_dof = fes.GetElementToDofTable();
mfem::Array<int> tp_el_dof(el_dof.Size_of_connections());
const int dof = fe->GetDof();
const int stride = compstride == 1 ? fes.GetVDim() : 1;
if (dof_map.Size()>0)
for (int i = 0; i < nelem; i++)
{
for (int i = 0; i < fes.GetNE(); i++)
const int elem_index = indices[i];
fes.GetElementDofs(elem_index, dofs);
const int el_offset = P * i;
for (int j = 0; j < P; j++)
{
const int el_offset = dof * i;
for (int j = 0; j < dof; j++)
{
tp_el_dof[j+el_offset] = stride*el_dof.GetJ()[dof_map[j]+el_offset];
}
tp_el_dof[j + el_offset] = stride*dofs[dof_map[j]];
}
}
else // dof_map.Size == 0, means dof_map[j]==j;
{
for (int i = 0; i < fes.GetNE(); i++)
{
const int el_offset = dof * i;
for (int j = 0; j < dof; j++)
{
tp_el_dof[j+el_offset] = stride*el_dof.GetJ()[j+el_offset];
}
}
}
CeedElemRestrictionCreate(ceed, fes.GetNE(), dof, fes.GetVDim(),
CeedElemRestrictionCreate(ceed, nelem, P, fes.GetVDim(),
compstride, (fes.GetVDim())*(fes.GetNDofs()),
CEED_MEM_HOST, CEED_COPY_VALUES,
tp_el_dof.GetData(), restr);
}
static void InitLexicoRestrWithIndices(
const mfem::FiniteElementSpace &fes,
int nelem,
const int* indices,
Ceed ceed, CeedElemRestriction *restr)
{
const mfem::FiniteElement *fe = fes.GetFE(indices[0]);
const int P = fe->GetDof();
CeedInt compstride = fes.GetOrdering()==Ordering::byVDIM ? 1 : fes.GetNDofs();
mfem::Array<int> tp_el_dof(nelem*P);
Array<int> dofs;
const int stride = compstride == 1 ? fes.GetVDim() : 1;
for (int i = 0; i < nelem; i++)
{
const int elem_index = indices[i];
fes.GetElementDofs(elem_index, dofs);
const int el_offset = P * i;
for (int j = 0; j < P; j++)
{
tp_el_dof[j + el_offset] = stride*dofs[j];
}
}
CeedElemRestrictionCreate(ceed, nelem, P, fes.GetVDim(),
compstride, (fes.GetVDim())*(fes.GetNDofs()),
CEED_MEM_HOST, CEED_COPY_VALUES,
tp_el_dof.GetData(), restr);
}
static void InitRestrictionWithIndicesImpl(
const mfem::FiniteElementSpace &fes,
int nelem,
const int* indices,
Ceed ceed, CeedElemRestriction *restr)
{
const mfem::FiniteElement *fe = fes.GetFE(indices[0]);
const mfem::TensorBasisElement * tfe =
dynamic_cast<const mfem::TensorBasisElement *>(fe);
if ( tfe && tfe->GetDofMap().Size()>0 ) // Native ordering using dof_map
{
InitNativeRestrWithIndices(fes, nelem, indices, ceed, restr);
}
else // Lexicographic ordering
{
InitLexicoRestrWithIndices(fes, nelem, indices, ceed, restr);
}
}
static void InitCoeffRestrictionWithIndicesImpl(
const mfem::FiniteElementSpace &fes,
int nelem,
const int* indices,
int nquads,
int ncomp,
Ceed ceed,
CeedElemRestriction *restr)
{
mfem::Array<int> tp_el_dof(nelem*nquads);
const int stride_quad = ncomp;
const int stride_elem = ncomp*nquads;
// TODO generalize to support different #quads
for (int i = 0; i < nelem; i++)
{
const int elem_index = indices[i];
const int el_offset = elem_index * stride_elem;
for (int j = 0; j < nquads; j++)
{
tp_el_dof[j + nquads * i] = j * stride_quad + el_offset;
}
}
CeedElemRestrictionCreate(ceed, nelem, nquads, ncomp, 1,
ncomp*fes.GetNE()*nquads,
CEED_MEM_HOST, CEED_COPY_VALUES,
tp_el_dof.GetData(), restr);
}
void InitStridedRestriction(const mfem::FiniteElementSpace &fes,
CeedInt nelem, CeedInt nqpts, CeedInt qdatasize,
const CeedInt *strides,
@@ -139,14 +235,57 @@ void InitRestriction(const FiniteElementSpace &fes,
// Init or retreive key values
if (restr_itr == mfem::internal::ceed_restr_map.end())
{
if (UsesTensorBasis(fes))
{
InitTensorRestriction(fes, ceed, restr);
}
else
{
InitNonTensorRestriction(fes, ceed, restr);
}
InitRestrictionImpl(fes, ceed, restr);
mfem::internal::ceed_restr_map[restr_key] = *restr;
}
else
{
*restr = restr_itr->second;
}
}
void InitRestrictionWithIndices(const FiniteElementSpace &fes,
int nelem,
const int* indices,
Ceed ceed,
CeedElemRestriction *restr)
{
// Check for FES -> basis, restriction in hash tables
const mfem::FiniteElement *fe = fes.GetFE(indices[0]);
const int P = fe->GetDof();
const int ncomp = fes.GetVDim();
RestrKey restr_key(&fes, nelem, P, ncomp, restr_type::Standard);
auto restr_itr = mfem::internal::ceed_restr_map.find(restr_key);
// Init or retreive key values
if (restr_itr == mfem::internal::ceed_restr_map.end())
{
InitRestrictionWithIndicesImpl(fes, nelem, indices, ceed, restr);
mfem::internal::ceed_restr_map[restr_key] = *restr;
}
else
{
*restr = restr_itr->second;
}
}
void InitCoeffRestrictionWithIndices(const FiniteElementSpace &fes,
int nelem,
const int* indices,
int nquads,
int ncomp,
Ceed ceed,
CeedElemRestriction *restr)
{
// Check for FES -> basis, restriction in hash tables
RestrKey restr_key(&fes, nelem, nquads, ncomp, restr_type::Coeff);
auto restr_itr = mfem::internal::ceed_restr_map.find(restr_key);
// Init or retreive key values
if (restr_itr == mfem::internal::ceed_restr_map.end())
{
InitCoeffRestrictionWithIndicesImpl(fes, nelem, indices, nquads, ncomp,
ceed, restr);
mfem::internal::ceed_restr_map[restr_key] = *restr;
}
else
+51 -25
View File
@@ -21,37 +21,63 @@ namespace ceed
{
#ifdef MFEM_USE_CEED
/// @brief Initialize a strided CeedElemRestriction
/** @a nelem is the number of elements,
@a nqpts is the total number of quadrature points
@a qdatasize is the number of data per quadrature point
@a strides Array for strides between [nodes, components, elements].
Data for node i, component j, element k can be found in the L-vector at
index i*strides[0] + j*strides[1] + k*strides[2]. CEED_STRIDES_BACKEND may
be used with vectors created by a Ceed backend. */
void InitStridedRestriction(const mfem::FiniteElementSpace &fes,
CeedInt nelem, CeedInt nqpts, CeedInt qdatasize,
const CeedInt *strides,
CeedElemRestriction *restr);
/** @brief Initialize a CeedElemRestriction for non-mixed meshes.
/** @brief Initialize a CeedElemRestriction.
*
* @param[in] fes Input finite element space.
* @param[in] ceed Input Ceed object.
@param[out] restr The address of the initialized CeedElemRestriction object.
@param[in] fes Input finite element space.
@param[in] ceed Input Ceed object.
@param[out] restr The address of the initialized CeedElemRestriction object.
*/
void InitRestriction(const FiniteElementSpace &fes,
Ceed ceed,
CeedElemRestriction *restr);
/** @brief Initialize a CeedElemRestriction.
*
* @param[in] fes Input finite element space.
* @param[in] ceed Input Ceed object.
@param[out] restr The address of the initialized CeedElemRestriction object.
*/
void InitTensorRestriction(const FiniteElementSpace &fes,
Ceed ceed, CeedElemRestriction *restr);
/** @brief Initialize a CeedElemRestriction for mixed meshes.
@param[in] fes The finite element space.
@param[in] ceed The Ceed object.
@param[in] nelem The number of elements.
@param[in] indices The indices of the elements of same type in the
`FiniteElementSpace`.
@param[out] restr The `CeedElemRestriction` to initialize. */
void InitRestrictionWithIndices(const FiniteElementSpace &fes,
int nelem,
const int* indices,
Ceed ceed,
CeedElemRestriction *restr);
/** @brief Initialize a strided CeedElemRestriction
@param[in] nelem is the number of elements.
@param[in] nqpts is the total number of quadrature points.
@param[in] qdatasize is the number of data per quadrature point.
@param[in] strides Array for strides between [nodes, components, elements].
Data for node i, component j, element k can be found in the L-vector at
index i*strides[0] + j*strides[1] + k*strides[2]. CEED_STRIDES_BACKEND may
be used with vectors created by a Ceed backend.
@param[out] restr The `CeedElemRestriction` to initialize. */
void InitStridedRestriction(const mfem::FiniteElementSpace &fes,
CeedInt nelem, CeedInt nqpts, CeedInt qdatasize,
const CeedInt *strides,
CeedElemRestriction *restr);
/** @brief Initialize a CeedElemRestriction for a mfem::Coefficient on a mixed
mesh.
@param[in] fes The finite element space.
@param[in] nelem is the number of elements.
@param[in] indices The indices of the elements of same type in the
`FiniteElementSpace`.
@param[in] nquads is the total number of quadrature points
@param[in] ncomp is the number of data per quadrature point
@param[in] ceed The Ceed object.
@param[out] restr The `CeedElemRestriction` to initialize. */
void InitCoeffRestrictionWithIndices(const FiniteElementSpace &fes,
int nelem,
const int* indices,
int nquads,
int ncomp,
Ceed ceed,
CeedElemRestriction *restr);
#endif
+88
View File
@@ -99,6 +99,34 @@ void InitBasisAndRestriction(const FiniteElementSpace &fes,
InitRestriction(fes, ceed, restr);
}
void InitBasisAndRestrictionWithIndices(const FiniteElementSpace &fes,
const IntegrationRule &irm,
int nelem,
const int* indices,
Ceed ceed, CeedBasis *basis,
CeedElemRestriction *restr)
{
InitBasisWithIndices(fes, irm, nelem, indices, ceed, basis);
InitRestrictionWithIndices(fes, nelem, indices, ceed, restr);
}
void InitBasisAndRestriction(const FiniteElementSpace &fes,
const IntegrationRule &irm,
int nelem,
const int* indices,
Ceed ceed, CeedBasis *basis,
CeedElemRestriction *restr)
{
if (indices)
{
InitBasisAndRestrictionWithIndices(fes,irm,nelem,indices,ceed,basis,restr);
}
else
{
InitBasisAndRestriction(fes,irm,ceed,basis,restr);
}
}
// Assumes a tensor-product operator with one active field
int CeedOperatorGetActiveField(CeedOperator oper, CeedOperatorField *field)
{
@@ -158,6 +186,66 @@ int CeedOperatorGetActiveField(CeedOperator oper, CeedOperatorField *field)
return 0;
}
template <>
const IntegrationRule & GetRule<MassIntegrator>(
const MassIntegrator &integ,
const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &trans)
{
return MassIntegrator::GetRule(trial_fe, test_fe, trans);
}
template <>
const IntegrationRule & GetRule<VectorMassIntegrator>(
const VectorMassIntegrator &integ,
const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &trans)
{
return MassIntegrator::GetRule(trial_fe, test_fe, trans);
}
template <>
const IntegrationRule & GetRule<ConvectionIntegrator>(
const ConvectionIntegrator &integ,
const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &trans)
{
return ConvectionIntegrator::GetRule(trial_fe, test_fe, trans);
}
template <>
const IntegrationRule & GetRule<VectorConvectionNLFIntegrator>(
const VectorConvectionNLFIntegrator &integ,
const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &trans)
{
return VectorConvectionNLFIntegrator::GetRule(trial_fe, trans);
}
template <>
const IntegrationRule & GetRule<DiffusionIntegrator>(
const DiffusionIntegrator &integ,
const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &trans)
{
return DiffusionIntegrator::GetRule(trial_fe, test_fe);
}
template <>
const IntegrationRule & GetRule<VectorDiffusionIntegrator>(
const VectorDiffusionIntegrator &integ,
const FiniteElement &trial_fe,
const FiniteElement &test_fe,
ElementTransformation &trans)
{
return DiffusionIntegrator::GetRule(trial_fe, test_fe);
}
std::string ceed_path;
const std::string &GetCeedPath()

Some files were not shown because too many files have changed in this diff Show More