Compare commits
7
Commits
| Author | SHA1 | Date | |
|---|---|---|---|
|
|
3d3e9919f9 | ||
|
|
875430f5d5 | ||
|
|
6aba1af158 | ||
|
|
ce6b9bd4d8 | ||
|
|
cff8552e1a | ||
|
|
5da21c841b | ||
|
|
de45b67215 |
+119
-66
@@ -28,10 +28,8 @@
|
||||
//
|
||||
// The example demonstrates the use of nonlinear operators (the
|
||||
// class ConductionOperator defining C(u)), as well as their
|
||||
// implicit time integration. Note that implementing the method
|
||||
// ConductionOperator::ImplicitSolve is the only requirement for
|
||||
// high-order implicit (SDIRK) time integration. By default, this
|
||||
// example uses the SUNDIALS ODE solvers from CVODE and ARKODE.
|
||||
// implicit time integration. By default, this example uses the
|
||||
// SUNDIALS ODE solvers from CVODE and ARKODE.
|
||||
//
|
||||
// We recommend viewing examples 2, 9 and 10 before viewing this
|
||||
// example.
|
||||
@@ -51,15 +49,16 @@ using namespace mfem;
|
||||
* and K(u) is the diffusion operator with diffusivity depending on u:
|
||||
* (\kappa + \alpha u).
|
||||
*
|
||||
* Class ConductionOperatorOperator represents the above ODE operator in the
|
||||
* general form F(u, k, t) = G(u, t) where
|
||||
* Class ConductionOperator represents the above ODE operator as a
|
||||
* TimeDependentOperator for use with native MFEM integrators and CVODE
|
||||
* integrators, i.e., F(u, k, t) = G(u, t) with F(u, du/dt, t) = du/dt and
|
||||
* G(u, t) = -K(u) u
|
||||
*
|
||||
* 1. F(u, du/dt, t) = du/dt (ODE is expressed in EXPLICIT form)
|
||||
* G(u, t) = - inv(M) K(u) u
|
||||
* 2. F(u, du/dt, t) = M du/dt (ODE is expressed in IMPLICIT form)
|
||||
* G(u, t) = - K(u) u
|
||||
* Class ConductionOperator represents the above ODE operator as an
|
||||
* ARKStepODE for use with ARKODE integrators, i.e., either M du/dt = -K(u) u
|
||||
* (mass form) or du/dt = -inv(M) K(u) u (MFEM form)
|
||||
*/
|
||||
class ConductionOperator : public TimeDependentOperator
|
||||
class ConductionOperator : public TimeDependentOperator, public ARKStepODE
|
||||
{
|
||||
FiniteElementSpace &fespace;
|
||||
Array<int> ess_tdof_list; // this list remains empty for pure Neumann b.c.
|
||||
@@ -81,50 +80,90 @@ class ConductionOperator : public TimeDependentOperator
|
||||
|
||||
mutable Vector z; // auxiliary vector
|
||||
|
||||
const bool use_mass_form;
|
||||
|
||||
public:
|
||||
|
||||
ConductionOperator(FiniteElementSpace &f, const real_t alpha,
|
||||
const real_t kappa, const Vector &u,
|
||||
const Type &ode_expression_type);
|
||||
const bool use_mass_form);
|
||||
|
||||
// Compute K(u_n) for use as an approximation in - K(u) u
|
||||
void SetConductionTensor(const Vector &u);
|
||||
|
||||
/** Compute G(u, t) as defined in the IMPLICIT expression form of the ODE
|
||||
operator, i.e., @a v = - K(u_n) @a u. Note that K(u_n) is an
|
||||
approximation to K(u). */
|
||||
void ExplicitMult(const Vector &u, Vector &v) const override;
|
||||
// ********* methods for MFEM native time integrators *********
|
||||
|
||||
/** Solve for k in F(u, k, t) = G(u, t) for either EXPLICIT or IMPLICIT
|
||||
expression forms of the ODE operator, i.e., @a k = - inv(M) K(u_n) @a u.
|
||||
/** Solve for k in F(u, k, t) = G(u, t), i.e., @a k = - inv(M) K(u_n) @a u.
|
||||
Note that K(u_n) is an approximation to K(u). */
|
||||
void Mult(const Vector &u, Vector &k) const override;
|
||||
|
||||
/** Solve for k in F(u + gam*k, k, t) = G(u + gam*k, t) for either EXPLICIT
|
||||
or IMPLICIT expression forms of the ODE operator, i.e.,
|
||||
[ M + @a gam K(u_n) ] @a k = - K(u_n) @a u . Note that K(u_n) is an
|
||||
approximation to K(u). */
|
||||
/** Solve for k in F(u + gam*k, k, t) = G(u + gam*k, t), i.e.,
|
||||
[ M + @a gam K(u_n) ] @a k = - K(u_n) @a u .
|
||||
Note that K(u_n) is an approximation to K(u). */
|
||||
void ImplicitSolve(const real_t gam, const Vector &u, Vector &k) override;
|
||||
|
||||
/** Setup to solve for dk in [dF/dk + gam*dF/du - gam*dG/du] dk = G - F for
|
||||
either EXPLICIT or IMPLICIT expression forms of the ODE operator, i.e.,
|
||||
[M - @a gam Jf(u)] dk = G - F, where Jf(u) is an approximation of the
|
||||
Jacobian of -K(u) u. The approximation chosen here is Jf(u) = -K(u_n). */
|
||||
int SUNImplicitSetup(const Vector &u, const Vector &fu, int jok, int *jcur,
|
||||
real_t gam) override;
|
||||
// ********* methods for ARKODE time integrators *********
|
||||
|
||||
// TODO: add comments
|
||||
int ARKSize() const override;
|
||||
|
||||
// TODO: add comments
|
||||
bool ARKInMassForm() const override;
|
||||
|
||||
// TODO: add comments
|
||||
void ARKEvaluateRHS(const Vector &u, const real_t t, Vector &result) const override;
|
||||
|
||||
// TODO: add comments
|
||||
int ARKImplicitSetup(const Vector &u, const real_t t, const Vector &fu,
|
||||
int jok, int *jcur, real_t gam) override;
|
||||
|
||||
/** Solve for @a dk in the system in SUNImplicitSetup to the given tolerance,
|
||||
with the residual @a r providing either
|
||||
1. @a r = G - F = inv(M) f(u) - k (EXPLICIT expression form)
|
||||
1. @a r = G - F = f(u) - M k (IMPLICIT expression form)
|
||||
1. @a r = G - F = inv(M) f(u) - k (MFEM form)
|
||||
1. @a r = G - F = f(u) - M k (mass form)
|
||||
*/
|
||||
int SUNImplicitSolve(const Vector &r, Vector &dk, real_t tol) override;
|
||||
int ARKImplicitSolve(const Vector &r, Vector &dk, real_t tol) override;
|
||||
|
||||
int SUNMassSetup() override;
|
||||
int ARKMassSetup(const real_t t) override;
|
||||
|
||||
int SUNMassSolve(const Vector &b, Vector &x, real_t tol) override;
|
||||
int ARKMassSolve(const Vector &b, Vector &x, real_t tol) override;
|
||||
|
||||
int SUNMassMult(const Vector &x, Vector &v) override;
|
||||
int ARKMassMult(const Vector &x, Vector &v) override;
|
||||
|
||||
// ********* methods for CVODE time integrators *********
|
||||
// note these methods merely call the corresponding ARKStepODE methods until
|
||||
// the CVODESolver is refactored to use specialized interface like ARKStepODE
|
||||
|
||||
/** Setup to solve for dk in [dF/dk + gam*dF/du - gam*dG/du] dk = G - F, i.e.,
|
||||
[M - @a gam Jf(u)] dk = G - F, where Jf(u) is an approximation of the
|
||||
Jacobian of -K(u) u. The approximation chosen here is Jf(u) = -K(u_n). */
|
||||
int SUNImplicitSetup(const Vector &u, const Vector &fu, int jok, int *jcur,
|
||||
real_t gam) override
|
||||
{
|
||||
return ARKImplicitSetup(u, 0.0, fu, jok, jcur, gam); // the ODE is autonomous
|
||||
}
|
||||
|
||||
/** Solve for @a dk in the system in SUNImplicitSetup to the given tolerance,
|
||||
with the residual @a r providing @a r = G - F = inv(M) f(u) - k. */
|
||||
int SUNImplicitSolve(const Vector &r, Vector &dk, real_t tol) override
|
||||
{
|
||||
return ARKImplicitSolve(r, dk, tol);
|
||||
}
|
||||
|
||||
int SUNMassSetup() override
|
||||
{
|
||||
return ARKMassSetup(0.0); // the ODE is autonomous
|
||||
}
|
||||
|
||||
int SUNMassSolve(const Vector &b, Vector &x, real_t tol) override
|
||||
{
|
||||
return ARKMassSolve(b, x, tol);
|
||||
}
|
||||
|
||||
int SUNMassMult(const Vector &x, Vector &v) override
|
||||
{
|
||||
return ARKMassMult(x, v);
|
||||
}
|
||||
};
|
||||
|
||||
real_t InitialTemperature(const Vector &x)
|
||||
@@ -245,16 +284,7 @@ int main(int argc, char *argv[])
|
||||
u_gf.GetTrueDofs(u);
|
||||
|
||||
// 6. Initialize the conduction ODE operator and the visualization.
|
||||
ConductionOperator::Type ode_expression_type;
|
||||
if (use_mass_solver)
|
||||
{
|
||||
ode_expression_type = ConductionOperator::Type::IMPLICIT;
|
||||
}
|
||||
else
|
||||
{
|
||||
ode_expression_type = ConductionOperator::Type::EXPLICIT;
|
||||
}
|
||||
ConductionOperator oper(fespace, alpha, kappa, u, ode_expression_type);
|
||||
ConductionOperator oper(fespace, alpha, kappa, u, use_mass_solver);
|
||||
|
||||
u_gf.SetFromTrueDofs(u);
|
||||
{
|
||||
@@ -352,7 +382,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
std::unique_ptr<ARKStepSolver> arkode(
|
||||
new ARKStepSolver(arkode_solver_type));
|
||||
arkode->Init(oper);
|
||||
arkode->Init(&oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 11 || ode_solver_type == 14)
|
||||
@@ -445,9 +475,10 @@ int main(int argc, char *argv[])
|
||||
ConductionOperator::ConductionOperator(FiniteElementSpace &fes,
|
||||
const real_t alpha, const real_t kappa,
|
||||
const Vector &u,
|
||||
const Type &ode_expression_type)
|
||||
: TimeDependentOperator(fes.GetTrueVSize(), 0.0, ode_expression_type),
|
||||
fespace(fes), M(&fespace), alpha(alpha), kappa(kappa), z(height)
|
||||
const bool use_mass_form)
|
||||
: TimeDependentOperator(fes.GetTrueVSize(), 0.0),
|
||||
fespace(fes), M(&fespace), alpha(alpha), kappa(kappa), z(height),
|
||||
use_mass_form(use_mass_form)
|
||||
{
|
||||
// specify a relative tolerance for all solves with MFEM integrators
|
||||
const real_t rel_tol = 1e-8;
|
||||
@@ -474,6 +505,16 @@ ConductionOperator::ConductionOperator(FiniteElementSpace &fes,
|
||||
SetConductionTensor(u);
|
||||
}
|
||||
|
||||
int ConductionOperator::ARKSize() const
|
||||
{
|
||||
return z.Size();
|
||||
}
|
||||
|
||||
bool ConductionOperator::ARKInMassForm() const
|
||||
{
|
||||
return use_mass_form;
|
||||
}
|
||||
|
||||
void ConductionOperator::SetConductionTensor(const Vector &u)
|
||||
{
|
||||
// Compute K(u_n).
|
||||
@@ -491,17 +532,27 @@ void ConductionOperator::SetConductionTensor(const Vector &u)
|
||||
K->FormSystemMatrix(ess_tdof_list, Kmat);
|
||||
}
|
||||
|
||||
void ConductionOperator::ExplicitMult(const Vector &u, Vector &v) const
|
||||
void ConductionOperator::ARKEvaluateRHS(const Vector &u, const real_t t,
|
||||
Vector &result) const
|
||||
{
|
||||
// Compute - K(u_n) u.
|
||||
Kmat.Mult(u, v);
|
||||
v.Neg();
|
||||
if (use_mass_form) // compute -K(u_n) u.
|
||||
{
|
||||
Kmat.Mult(u, result);
|
||||
result.Neg();
|
||||
}
|
||||
else // compute -inv(M) K(u_n) u
|
||||
{
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg();
|
||||
M_solver.Mult(z, result);
|
||||
}
|
||||
}
|
||||
|
||||
void ConductionOperator::Mult(const Vector &u, Vector &k) const
|
||||
{
|
||||
// Compute - inv(M) K(u_n) u.
|
||||
ExplicitMult(u, z);
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg();
|
||||
M_solver.Mult(z, k);
|
||||
}
|
||||
|
||||
@@ -509,14 +560,16 @@ void ConductionOperator::ImplicitSolve(const real_t gam, const Vector &u,
|
||||
Vector &k)
|
||||
{
|
||||
// Solve for k in M k = - K(u_n) [u + gam*k].
|
||||
ExplicitMult(u, z);
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg();
|
||||
T = std::unique_ptr<SparseMatrix>(Add(1.0, Mmat, gam, Kmat));
|
||||
T_solver.SetOperator(*T);
|
||||
T_solver.Mult(z, k);
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNImplicitSetup(const Vector &u, const Vector &fu,
|
||||
int jok, int *jcur, real_t gam)
|
||||
int ConductionOperator::ARKImplicitSetup(const Vector &u, const real_t t,
|
||||
const Vector &fu, int jok, int *jcur,
|
||||
real_t gam)
|
||||
{
|
||||
// Compute T = M + gamma K(u_n).
|
||||
T = std::unique_ptr<SparseMatrix>(Add(1.0, Mmat, gam, Kmat));
|
||||
@@ -525,22 +578,22 @@ int ConductionOperator::SUNImplicitSetup(const Vector &u, const Vector &fu,
|
||||
return SUN_SUCCESS;
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNImplicitSolve(const Vector &r, Vector &dk,
|
||||
int ConductionOperator::ARKImplicitSolve(const Vector &r, Vector &dk,
|
||||
real_t tol)
|
||||
{
|
||||
// Solve the system [M + gamma K(u_n)] dk = - K(u_n) u - M k.
|
||||
// What value r is providing depends on the ODE expression form:
|
||||
// EXPLICIT form: r = -inv(M) K(u_n) u - k
|
||||
// IMPLICIT form: r = -K(u_n) u - M k
|
||||
// MFEM form: r = -inv(M) K(u_n) u - k
|
||||
// mass form: r = -K(u_n) u - M k
|
||||
T_solver.SetRelTol(tol);
|
||||
if (isExplicit())
|
||||
if (use_mass_form)
|
||||
{
|
||||
Mmat.Mult(r, z);
|
||||
T_solver.Mult(z, dk);
|
||||
T_solver.Mult(r, dk);
|
||||
}
|
||||
else
|
||||
{
|
||||
T_solver.Mult(r, dk);
|
||||
Mmat.Mult(r, z);
|
||||
T_solver.Mult(z, dk);
|
||||
}
|
||||
if (T_solver.GetConverged())
|
||||
{
|
||||
@@ -552,13 +605,13 @@ int ConductionOperator::SUNImplicitSolve(const Vector &r, Vector &dk,
|
||||
}
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNMassSetup()
|
||||
int ConductionOperator::ARKMassSetup(const real_t t)
|
||||
{
|
||||
// Do nothing b/c mass solver was setup in constructor.
|
||||
return SUN_SUCCESS;
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNMassSolve(const Vector &b, Vector &x, real_t tol)
|
||||
int ConductionOperator::ARKMassSolve(const Vector &b, Vector &x, real_t tol)
|
||||
{
|
||||
// Solve the system M x = b.
|
||||
M_solver.SetRelTol(tol);
|
||||
@@ -573,7 +626,7 @@ int ConductionOperator::SUNMassSolve(const Vector &b, Vector &x, real_t tol)
|
||||
}
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNMassMult(const Vector &x, Vector &v)
|
||||
int ConductionOperator::ARKMassMult(const Vector &x, Vector &v)
|
||||
{
|
||||
// Compute M x.
|
||||
Mmat.Mult(x, v);
|
||||
|
||||
+119
-66
@@ -29,10 +29,8 @@
|
||||
//
|
||||
// The example demonstrates the use of nonlinear operators (the
|
||||
// class ConductionOperator defining C(u)), as well as their
|
||||
// implicit time integration. Note that implementing the method
|
||||
// ConductionOperator::ImplicitSolve is the only requirement for
|
||||
// high-order implicit (SDIRK) time integration. By default, this
|
||||
// example uses the SUNDIALS ODE solvers from CVODE and ARKODE.
|
||||
// implicit time integration. By default, this example uses the
|
||||
// SUNDIALS ODE solvers from CVODE and ARKODE.
|
||||
//
|
||||
// We recommend viewing examples 2, 9 and 10 before viewing this
|
||||
// example.
|
||||
@@ -52,15 +50,16 @@ using namespace mfem;
|
||||
* and K(u) is the diffusion operator with diffusivity depending on u:
|
||||
* (\kappa + \alpha u).
|
||||
*
|
||||
* Class ConductionOperatorOperator represents the above ODE operator in the
|
||||
* general form F(u, k, t) = G(u, t) where either
|
||||
* Class ConductionOperator represents the above ODE operator as a
|
||||
* TimeDependentOperator for use with native MFEM integrators and CVODE
|
||||
* integrators, i.e., F(u, k, t) = G(u, t) with F(u, du/dt, t) = du/dt and
|
||||
* G(u, t) = -K(u) u
|
||||
*
|
||||
* 1. F(u, du/dt, t) = du/dt (ODE is expressed in EXPLICIT form)
|
||||
* G(u, t) = - inv(M) K(u) u
|
||||
* 2. F(u, du/dt, t) = M du/dt (ODE is expressed in IMPLICIT form)
|
||||
* G(u, t) = - K(u) u
|
||||
* Class ConductionOperator represents the above ODE operator as an
|
||||
* ARKStepODE for use with ARKODE integrators, i.e., either M du/dt = -K(u) u
|
||||
* (mass form) or du/dt = -inv(M) K(u) u (MFEM form)
|
||||
*/
|
||||
class ConductionOperator : public TimeDependentOperator
|
||||
class ConductionOperator : public TimeDependentOperator, public ARKStepODE
|
||||
{
|
||||
ParFiniteElementSpace &fespace;
|
||||
Array<int> ess_tdof_list; // this list remains empty for pure Neumann b.c.
|
||||
@@ -82,50 +81,90 @@ class ConductionOperator : public TimeDependentOperator
|
||||
|
||||
mutable Vector z; // auxiliary vector
|
||||
|
||||
const bool use_mass_form;
|
||||
|
||||
public:
|
||||
|
||||
ConductionOperator(ParFiniteElementSpace &f, const real_t alpha,
|
||||
const real_t kappa, const Vector &u,
|
||||
const Type &ode_expression_type);
|
||||
const bool use_mass_form);
|
||||
|
||||
// Compute K(u_n) for use as an approximation in - K(u) u
|
||||
void SetConductionTensor(const Vector &u);
|
||||
|
||||
/** Compute G(u, t) as defined in the IMPLICIT expression form of the ODE
|
||||
operator, i.e., @a v = - K(u_n) @a u. Note that K(u_n) is an
|
||||
approximation to K(u). */
|
||||
void ExplicitMult(const Vector &u, Vector &v) const override;
|
||||
// ********* methods for MFEM native time integrators *********
|
||||
|
||||
/** Solve for k in F(u, k, t) = G(u, t) for either EXPLICIT or IMPLICIT
|
||||
expression forms of the ODE operator, i.e., @a k = - inv(M) K(u_n) @a u.
|
||||
/** Solve for k in F(u, k, t) = G(u, t), i.e., @a k = - inv(M) K(u_n) @a u.
|
||||
Note that K(u_n) is an approximation to K(u). */
|
||||
void Mult(const Vector &u, Vector &k) const override;
|
||||
|
||||
/** Solve for k in F(u + gam*k, k, t) = G(u + gam*k, t) for either EXPLICIT
|
||||
or IMPLICIT expression forms of the ODE operator, i.e.,
|
||||
[ M + @a gam K(u_n) ] @a k = - K(u_n) @a u . Note that K(u_n) is an
|
||||
approximation to K(u). */
|
||||
/** Solve for k in F(u + gam*k, k, t) = G(u + gam*k, t), i.e.,
|
||||
[ M + @a gam K(u_n) ] @a k = - K(u_n) @a u .
|
||||
Note that K(u_n) is an approximation to K(u). */
|
||||
void ImplicitSolve(const real_t gam, const Vector &u, Vector &k) override;
|
||||
|
||||
/** Setup to solve for dk in [dF/dk + gam*dF/du - gam*dG/du] dk = G - F for
|
||||
either EXPLICIT or IMPLICIT expression forms of the ODE operator, i.e.,
|
||||
[M - @a gam Jf(u)] dk = G - F, where Jf(u) is an approximation of the
|
||||
Jacobian of -K(u) u. The approximation chosen here is Jf(u) = -K(u_n). */
|
||||
int SUNImplicitSetup(const Vector &u, const Vector &fu, int jok, int *jcur,
|
||||
real_t gam) override;
|
||||
// ********* methods for ARKODE time integrators *********
|
||||
|
||||
// TODO: add comments
|
||||
int ARKSize() const override;
|
||||
|
||||
// TODO: add comments
|
||||
bool ARKInMassForm() const override;
|
||||
|
||||
// TODO: add comments
|
||||
void ARKEvaluateRHS(const Vector &u, const real_t t, Vector &result) const override;
|
||||
|
||||
// TODO: add comments
|
||||
int ARKImplicitSetup(const Vector &u, const real_t t, const Vector &fu,
|
||||
int jok, int *jcur, real_t gam) override;
|
||||
|
||||
/** Solve for @a dk in the system in SUNImplicitSetup to the given tolerance,
|
||||
with the residual @a r providing either
|
||||
1. @a r = G - F = inv(M) f(u) - k (EXPLICIT expression form)
|
||||
1. @a r = G - F = f(u) - M k (IMPLICIT expression form)
|
||||
1. @a r = G - F = inv(M) f(u) - k (MFEM form)
|
||||
1. @a r = G - F = f(u) - M k (mass form)
|
||||
*/
|
||||
int SUNImplicitSolve(const Vector &r, Vector &dk, real_t tol) override;
|
||||
int ARKImplicitSolve(const Vector &r, Vector &dk, real_t tol) override;
|
||||
|
||||
int SUNMassSetup() override;
|
||||
int ARKMassSetup(const real_t t) override;
|
||||
|
||||
int SUNMassSolve(const Vector &b, Vector &x, real_t tol) override;
|
||||
int ARKMassSolve(const Vector &b, Vector &x, real_t tol) override;
|
||||
|
||||
int SUNMassMult(const Vector &x, Vector &v) override;
|
||||
int ARKMassMult(const Vector &x, Vector &v) override;
|
||||
|
||||
// ********* methods for CVODE time integrators *********
|
||||
// note these methods merely call the corresponding ARKStepODE methods until
|
||||
// the CVODESolver is refactored to use specialized interface like ARKStepODE
|
||||
|
||||
/** Setup to solve for dk in [dF/dk + gam*dF/du - gam*dG/du] dk = G - F, i.e.,
|
||||
[M - @a gam Jf(u)] dk = G - F, where Jf(u) is an approximation of the
|
||||
Jacobian of -K(u) u. The approximation chosen here is Jf(u) = -K(u_n). */
|
||||
int SUNImplicitSetup(const Vector &u, const Vector &fu, int jok, int *jcur,
|
||||
real_t gam) override
|
||||
{
|
||||
return ARKImplicitSetup(u, 0.0, fu, jok, jcur, gam); // the ODE is autonomous
|
||||
}
|
||||
|
||||
/** Solve for @a dk in the system in SUNImplicitSetup to the given tolerance,
|
||||
with the residual @a r providing @a r = G - F = inv(M) f(u) - k. */
|
||||
int SUNImplicitSolve(const Vector &r, Vector &dk, real_t tol) override
|
||||
{
|
||||
return ARKImplicitSolve(r, dk, tol);
|
||||
}
|
||||
|
||||
int SUNMassSetup() override
|
||||
{
|
||||
return ARKMassSetup(0.0); // the ODE is autonomous
|
||||
}
|
||||
|
||||
int SUNMassSolve(const Vector &b, Vector &x, real_t tol) override
|
||||
{
|
||||
return ARKMassSolve(b, x, tol);
|
||||
}
|
||||
|
||||
int SUNMassMult(const Vector &x, Vector &v) override
|
||||
{
|
||||
return ARKMassMult(x, v);
|
||||
}
|
||||
};
|
||||
|
||||
real_t InitialTemperature(const Vector &x)
|
||||
@@ -273,16 +312,7 @@ int main(int argc, char *argv[])
|
||||
u_gf.GetTrueDofs(u);
|
||||
|
||||
// 8. Initialize the conduction ODE operator and the visualization.
|
||||
ConductionOperator::Type ode_expression_type;
|
||||
if (use_mass_solver)
|
||||
{
|
||||
ode_expression_type = ConductionOperator::Type::IMPLICIT;
|
||||
}
|
||||
else
|
||||
{
|
||||
ode_expression_type = ConductionOperator::Type::EXPLICIT;
|
||||
}
|
||||
ConductionOperator oper(fespace, alpha, kappa, u, ode_expression_type);
|
||||
ConductionOperator oper(fespace, alpha, kappa, u, use_mass_solver);
|
||||
|
||||
u_gf.SetFromTrueDofs(u);
|
||||
{
|
||||
@@ -394,7 +424,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
std::unique_ptr<ARKStepSolver> arkode(
|
||||
new ARKStepSolver(MPI_COMM_WORLD, arkode_solver_type));
|
||||
arkode->Init(oper);
|
||||
arkode->Init(&oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 11 || ode_solver_type == 14)
|
||||
@@ -497,10 +527,11 @@ int main(int argc, char *argv[])
|
||||
ConductionOperator::ConductionOperator(ParFiniteElementSpace &fes,
|
||||
const real_t alpha, const real_t kappa,
|
||||
const Vector &u,
|
||||
const Type &ode_expression_type)
|
||||
: TimeDependentOperator(fes.GetTrueVSize(), 0.0, ode_expression_type),
|
||||
const bool use_mass_form)
|
||||
: TimeDependentOperator(fes.GetTrueVSize(), 0.0),
|
||||
fespace(fes), M(&fespace), alpha(alpha), kappa(kappa),
|
||||
M_solver(fes.GetComm()), T_solver(fes.GetComm()), z(height)
|
||||
M_solver(fes.GetComm()), T_solver(fes.GetComm()), z(height),
|
||||
use_mass_form(use_mass_form)
|
||||
{
|
||||
// specify a relative tolerance for all solves with MFEM integrators
|
||||
const real_t rel_tol = 1e-8;
|
||||
@@ -528,6 +559,16 @@ ConductionOperator::ConductionOperator(ParFiniteElementSpace &fes,
|
||||
SetConductionTensor(u);
|
||||
}
|
||||
|
||||
int ConductionOperator::ARKSize() const
|
||||
{
|
||||
return z.Size();
|
||||
}
|
||||
|
||||
bool ConductionOperator::ARKInMassForm() const
|
||||
{
|
||||
return use_mass_form;
|
||||
}
|
||||
|
||||
void ConductionOperator::SetConductionTensor(const Vector &u)
|
||||
{
|
||||
// Compute K(u_n).
|
||||
@@ -545,17 +586,27 @@ void ConductionOperator::SetConductionTensor(const Vector &u)
|
||||
K->FormSystemMatrix(ess_tdof_list, Kmat);
|
||||
}
|
||||
|
||||
void ConductionOperator::ExplicitMult(const Vector &u, Vector &v) const
|
||||
void ConductionOperator::ARKEvaluateRHS(const Vector &u, const real_t t,
|
||||
Vector &result) const
|
||||
{
|
||||
// Compute - K(u_n) u.
|
||||
Kmat.Mult(u, v);
|
||||
v.Neg();
|
||||
if (use_mass_form) // compute -K(u_n) u.
|
||||
{
|
||||
Kmat.Mult(u, result);
|
||||
result.Neg();
|
||||
}
|
||||
else // compute -inv(M) K(u_n) u
|
||||
{
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg();
|
||||
M_solver.Mult(z, result);
|
||||
}
|
||||
}
|
||||
|
||||
void ConductionOperator::Mult(const Vector &u, Vector &k) const
|
||||
{
|
||||
// Compute - inv(M) K(u_n) u.
|
||||
ExplicitMult(u, z);
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg();
|
||||
M_solver.Mult(z, k);
|
||||
}
|
||||
|
||||
@@ -563,14 +614,16 @@ void ConductionOperator::ImplicitSolve(const real_t gam, const Vector &u,
|
||||
Vector &k)
|
||||
{
|
||||
// Solve for k in M k = - K(u_n) [u + gam*k].
|
||||
ExplicitMult(u, z);
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg();
|
||||
T = std::unique_ptr<HypreParMatrix>(Add(1.0, Mmat, gam, Kmat));
|
||||
T_solver.SetOperator(*T);
|
||||
T_solver.Mult(z, k);
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNImplicitSetup(const Vector &u, const Vector &fu,
|
||||
int jok, int *jcur, real_t gam)
|
||||
int ConductionOperator::ARKImplicitSetup(const Vector &u, const real_t t,
|
||||
const Vector &fu, int jok, int *jcur,
|
||||
real_t gam)
|
||||
{
|
||||
// Compute T = M + gamma K(u_n).
|
||||
T = std::unique_ptr<HypreParMatrix>(Add(1.0, Mmat, gam, Kmat));
|
||||
@@ -579,22 +632,22 @@ int ConductionOperator::SUNImplicitSetup(const Vector &u, const Vector &fu,
|
||||
return SUN_SUCCESS;
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNImplicitSolve(const Vector &r, Vector &dk,
|
||||
int ConductionOperator::ARKImplicitSolve(const Vector &r, Vector &dk,
|
||||
real_t tol)
|
||||
{
|
||||
// Solve the system [M + gamma K(u_n)] dk = - K(u_n) u - M k.
|
||||
// What value r is providing depends on the ODE expression form:
|
||||
// EXPLICIT form: r = -inv(M) K(u_n) u - k
|
||||
// IMPLICIT form: r = -K(u_n) u - M k
|
||||
// MFEM form: r = -inv(M) K(u_n) u - k
|
||||
// mass form: r = -K(u_n) u - M k
|
||||
T_solver.SetRelTol(tol);
|
||||
if (isExplicit())
|
||||
if (use_mass_form)
|
||||
{
|
||||
Mmat.Mult(r, z);
|
||||
T_solver.Mult(z, dk);
|
||||
T_solver.Mult(r, dk);
|
||||
}
|
||||
else
|
||||
{
|
||||
T_solver.Mult(r, dk);
|
||||
Mmat.Mult(r, z);
|
||||
T_solver.Mult(z, dk);
|
||||
}
|
||||
if (T_solver.GetConverged())
|
||||
{
|
||||
@@ -606,13 +659,13 @@ int ConductionOperator::SUNImplicitSolve(const Vector &r, Vector &dk,
|
||||
}
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNMassSetup()
|
||||
int ConductionOperator::ARKMassSetup(const real_t t)
|
||||
{
|
||||
// Do nothing b/c mass solver was setup in constructor.
|
||||
return SUN_SUCCESS;
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNMassSolve(const Vector &b, Vector &x, real_t tol)
|
||||
int ConductionOperator::ARKMassSolve(const Vector &b, Vector &x, real_t tol)
|
||||
{
|
||||
// Solve the system M x = b.
|
||||
M_solver.SetRelTol(tol);
|
||||
@@ -627,7 +680,7 @@ int ConductionOperator::SUNMassSolve(const Vector &b, Vector &x, real_t tol)
|
||||
}
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNMassMult(const Vector &x, Vector &v)
|
||||
int ConductionOperator::ARKMassMult(const Vector &x, Vector &v)
|
||||
{
|
||||
// Compute M x.
|
||||
Mmat.Mult(x, v);
|
||||
|
||||
@@ -119,7 +119,7 @@ public:
|
||||
and advection matrices, and b describes the flow on the boundary. This can
|
||||
be written as a general ODE, du/dt = M^{-1} (K u + b), and this class is
|
||||
used to evaluate the right-hand side. */
|
||||
class FE_Evolution : public TimeDependentOperator
|
||||
class FE_Evolution : public TimeDependentOperator, public ARKStepODE
|
||||
{
|
||||
private:
|
||||
BilinearForm &M, &K;
|
||||
@@ -133,9 +133,14 @@ private:
|
||||
public:
|
||||
FE_Evolution(BilinearForm &M_, BilinearForm &K_, const Vector &b_);
|
||||
|
||||
// TimeDependentOperator methods for MFEM native and CVODE time integrators
|
||||
virtual void Mult(const Vector &x, Vector &y) const;
|
||||
virtual void ImplicitSolve(const double dt, const Vector &x, Vector &k);
|
||||
|
||||
// ARKStepODE methods for ARKODE time integrators
|
||||
int ARKSize() const override;
|
||||
void ARKEvaluateRHS(const Vector &u, const real_t t, Vector& result) const override;
|
||||
|
||||
virtual ~FE_Evolution();
|
||||
};
|
||||
|
||||
@@ -404,14 +409,14 @@ int main(int argc, char *argv[])
|
||||
ode_solver = cvode; break;
|
||||
case 8:
|
||||
arkode = new ARKStepSolver(ARKStepSolver::EXPLICIT);
|
||||
arkode->Init(adv);
|
||||
arkode->Init(&adv);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
arkode->SetOrder(4);
|
||||
ode_solver = arkode; break;
|
||||
case 9:
|
||||
arkode = new ARKStepSolver(ARKStepSolver::EXPLICIT);
|
||||
arkode->Init(adv);
|
||||
arkode->Init(&adv);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
arkode->SetERKTableNum(ARKODE_FEHLBERG_13_7_8);
|
||||
@@ -520,6 +525,19 @@ void FE_Evolution::ImplicitSolve(const double dt, const Vector &x, Vector &k)
|
||||
dg_solver->Mult(z, k);
|
||||
}
|
||||
|
||||
int FE_Evolution::ARKSize() const
|
||||
{
|
||||
return z.Size();
|
||||
}
|
||||
|
||||
void FE_Evolution::ARKEvaluateRHS(const Vector &u, const real_t t, Vector &result) const
|
||||
{
|
||||
// y = M^{-1} (K x + b)
|
||||
K.Mult(u, z);
|
||||
z += b;
|
||||
M_solver.Mult(z, result);
|
||||
}
|
||||
|
||||
FE_Evolution::~FE_Evolution()
|
||||
{
|
||||
delete M_prec;
|
||||
|
||||
@@ -206,7 +206,7 @@ public:
|
||||
and advection matrices, and b describes the flow on the boundary. This can
|
||||
be written as a general ODE, du/dt = M^{-1} (K u + b), and this class is
|
||||
used to evaluate the right-hand side. */
|
||||
class FE_Evolution : public TimeDependentOperator
|
||||
class FE_Evolution : public TimeDependentOperator, public ARKStepODE
|
||||
{
|
||||
private:
|
||||
OperatorHandle M, K;
|
||||
@@ -221,9 +221,14 @@ public:
|
||||
FE_Evolution(ParBilinearForm &M_, ParBilinearForm &K_, const Vector &b_,
|
||||
PrecType prec_type);
|
||||
|
||||
// TimeDependentOperator methods for MFEM native and CVODE time integrators
|
||||
virtual void Mult(const Vector &x, Vector &y) const;
|
||||
virtual void ImplicitSolve(const double dt, const Vector &x, Vector &k);
|
||||
|
||||
// ARKStepODE methods for ARKODE time integrators
|
||||
int ARKSize() const override;
|
||||
void ARKEvaluateRHS(const Vector &u, const real_t t, Vector& result) const override;
|
||||
|
||||
virtual ~FE_Evolution();
|
||||
};
|
||||
|
||||
@@ -575,7 +580,7 @@ int main(int argc, char *argv[])
|
||||
case 8:
|
||||
case 9:
|
||||
arkode = new ARKStepSolver(MPI_COMM_WORLD, ARKStepSolver::EXPLICIT);
|
||||
arkode->Init(adv);
|
||||
arkode->Init(&adv);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 9)
|
||||
@@ -743,6 +748,19 @@ void FE_Evolution::Mult(const Vector &x, Vector &y) const
|
||||
M_solver.Mult(z, y);
|
||||
}
|
||||
|
||||
int FE_Evolution::ARKSize() const
|
||||
{
|
||||
return z.Size();
|
||||
}
|
||||
|
||||
void FE_Evolution::ARKEvaluateRHS(const Vector &u, const real_t t, Vector &result) const
|
||||
{
|
||||
// y = M^{-1} (K x + b)
|
||||
K->Mult(u, z);
|
||||
z += b;
|
||||
M_solver.Mult(z, result);
|
||||
}
|
||||
|
||||
FE_Evolution::~FE_Evolution()
|
||||
{
|
||||
delete M_prec;
|
||||
|
||||
+3
-3
@@ -578,7 +578,7 @@ public:
|
||||
|
||||
Presently, this method is used by SUNDIALS ARKStep integrator, for more
|
||||
details, see the ARKode User Guide. */
|
||||
virtual int SUNMassSetup();
|
||||
MFEM_DEPRECATED virtual int SUNMassSetup();
|
||||
|
||||
/** @brief Solve the mass matrix linear system M @a x = @a b, where M is
|
||||
defined by the method SUNMassSetup().
|
||||
@@ -591,7 +591,7 @@ public:
|
||||
|
||||
Presently, this method is used by SUNDIALS ARKStep integrator, for more
|
||||
details, see the ARKode User Guide. */
|
||||
virtual int SUNMassSolve(const Vector &b, Vector &x, real_t tol);
|
||||
MFEM_DEPRECATED virtual int SUNMassSolve(const Vector &b, Vector &x, real_t tol);
|
||||
|
||||
/** @brief Compute the mass matrix-vector product @a v = M @a x, where M is
|
||||
defined by the method SUNMassSetup().
|
||||
@@ -603,7 +603,7 @@ public:
|
||||
|
||||
Presently, this method is used by SUNDIALS ARKStep integrator, for more
|
||||
details, see the ARKode User Guide. */
|
||||
virtual int SUNMassMult(const Vector &x, Vector &v);
|
||||
MFEM_DEPRECATED virtual int SUNMassMult(const Vector &x, Vector &v);
|
||||
|
||||
virtual ~TimeDependentOperator() { }
|
||||
};
|
||||
|
||||
+106
-42
@@ -1367,6 +1367,84 @@ CVODESSolver::~CVODESSolver()
|
||||
// ARKStep interface
|
||||
// ---------------------------------------------------------------------------
|
||||
|
||||
ARKStepSolver::TimeDependentOperatorWrapper::TimeDependentOperatorWrapper(
|
||||
TimeDependentOperator *f)
|
||||
{
|
||||
tdo = f;
|
||||
}
|
||||
|
||||
int ARKStepSolver::TimeDependentOperatorWrapper::ARKSize() const
|
||||
{
|
||||
return tdo->Height();
|
||||
}
|
||||
|
||||
bool ARKStepSolver::TimeDependentOperatorWrapper::ARKInMassForm() const
|
||||
{
|
||||
return (tdo->isExplicit() == false);
|
||||
}
|
||||
|
||||
void ARKStepSolver::TimeDependentOperatorWrapper::ARKSetEvalMode(
|
||||
const ARKEvalMode new_eval_mode)
|
||||
{
|
||||
if (new_eval_mode == NORMAL)
|
||||
tdo->SetEvalMode(tdo->NORMAL);
|
||||
else if (new_eval_mode == ADDITIVE_TERM_1)
|
||||
tdo->SetEvalMode(tdo->ADDITIVE_TERM_1);
|
||||
else if (new_eval_mode == ADDITIVE_TERM_2)
|
||||
tdo->SetEvalMode(tdo->ADDITIVE_TERM_2);
|
||||
else
|
||||
mfem_error("Unrecognized evaluation mode.");
|
||||
}
|
||||
|
||||
void ARKStepSolver::TimeDependentOperatorWrapper::ARKEvaluateRHS(
|
||||
const Vector &u, const real_t t, Vector &result) const
|
||||
{
|
||||
tdo->SetTime(t);
|
||||
if (ARKInMassForm())
|
||||
tdo->Mult(u, result);
|
||||
else
|
||||
tdo->ExplicitMult(u, result);
|
||||
}
|
||||
|
||||
int ARKStepSolver::TimeDependentOperatorWrapper::ARKImplicitSetup(
|
||||
const Vector &u, const real_t t, const Vector &v, int jok, int *jcur,
|
||||
real_t gamma)
|
||||
{
|
||||
tdo->SetTime(t);
|
||||
return tdo->SUNImplicitSetup(u, v, jok, jcur, gamma);
|
||||
}
|
||||
|
||||
int ARKStepSolver::TimeDependentOperatorWrapper::ARKImplicitSolve(
|
||||
const Vector &r, Vector &dk, real_t tol)
|
||||
{
|
||||
return tdo->SUNImplicitSolve(r, dk, tol);
|
||||
}
|
||||
|
||||
int ARKStepSolver::TimeDependentOperatorWrapper::ARKMassSetup(const real_t t)
|
||||
{
|
||||
tdo->SetTime(t);
|
||||
return tdo->SUNMassSetup();
|
||||
}
|
||||
|
||||
int ARKStepSolver::TimeDependentOperatorWrapper::ARKMassSolve(const Vector &b,
|
||||
Vector &x, real_t tol)
|
||||
{
|
||||
return tdo->SUNMassSolve(b, x, tol);
|
||||
}
|
||||
|
||||
int ARKStepSolver::TimeDependentOperatorWrapper::ARKMassMult(const Vector &x,
|
||||
const real_t t, Vector &v)
|
||||
{
|
||||
tdo->SetTime(t);
|
||||
return tdo->SUNMassMult(x, v);
|
||||
}
|
||||
|
||||
int ARKStepSolver::TimeDependentOperatorWrapper::ARKMassMult(const Vector &x,
|
||||
Vector &v)
|
||||
{
|
||||
return tdo->SUNMassMult(x, v);
|
||||
}
|
||||
|
||||
int ARKStepSolver::RHS1(sunrealtype t, const N_Vector y, N_Vector result,
|
||||
void *user_data)
|
||||
{
|
||||
@@ -1381,19 +1459,11 @@ int ARKStepSolver::RHS1(sunrealtype t, const N_Vector y, N_Vector result,
|
||||
// or fe(t, y) in one of
|
||||
// 1. y' = fe(t, y) + fi(t, y)
|
||||
// 2. M y' = fe(t, y) + fi(t, y)
|
||||
self->f->SetTime(t);
|
||||
if (self->rk_type == IMEX)
|
||||
{
|
||||
self->f->SetEvalMode(TimeDependentOperator::ADDITIVE_TERM_1);
|
||||
}
|
||||
if (self->f->isExplicit()) // ODE is in form 1
|
||||
{
|
||||
self->f->Mult(mfem_y, mfem_result);
|
||||
}
|
||||
else // ODE is in form 2
|
||||
{
|
||||
self->f->ExplicitMult(mfem_y, mfem_result);
|
||||
self->f_arkstep->ARKSetEvalMode(ARKStepODE::ADDITIVE_TERM_1);
|
||||
}
|
||||
self->f_arkstep->ARKEvaluateRHS(mfem_y, t, mfem_result);
|
||||
|
||||
// Return success
|
||||
return (0);
|
||||
@@ -1410,16 +1480,8 @@ int ARKStepSolver::RHS2(sunrealtype t, const N_Vector y, N_Vector result,
|
||||
// Compute fi(t, y) in one of
|
||||
// 1. y' = fe(t, y) + fi(t, y) (ODE is expressed in EXPLICIT form)
|
||||
// 2. M y' = fe(t, y) + fi(y, t) (ODE is expressed in IMPLICIT form)
|
||||
self->f->SetTime(t);
|
||||
self->f->SetEvalMode(TimeDependentOperator::ADDITIVE_TERM_2);
|
||||
if (self->f->isExplicit())
|
||||
{
|
||||
self->f->Mult(mfem_y, mfem_result);
|
||||
}
|
||||
else
|
||||
{
|
||||
self->f->ExplicitMult(mfem_y, mfem_result);
|
||||
}
|
||||
self->f_arkstep->ARKSetEvalMode(ARKStepODE::ADDITIVE_TERM_2);
|
||||
self->f_arkstep->ARKEvaluateRHS(mfem_y, t, mfem_result);
|
||||
|
||||
// Return success
|
||||
return (0);
|
||||
@@ -1436,12 +1498,11 @@ int ARKStepSolver::LinSysSetup(sunrealtype t, N_Vector y, N_Vector fy,
|
||||
ARKStepSolver *self = static_cast<ARKStepSolver*>(GET_CONTENT(A));
|
||||
|
||||
// Compute the linear system
|
||||
self->f->SetTime(t);
|
||||
if (self->rk_type == IMEX)
|
||||
{
|
||||
self->f->SetEvalMode(TimeDependentOperator::ADDITIVE_TERM_2);
|
||||
self->f_arkstep->ARKSetEvalMode(ARKStepODE::ADDITIVE_TERM_2);
|
||||
}
|
||||
return (self->f->SUNImplicitSetup(mfem_y, mfem_fy, jok, jcur, gamma));
|
||||
return (self->f_arkstep->ARKImplicitSetup(mfem_y, t, mfem_fy, jok, jcur, gamma));
|
||||
}
|
||||
|
||||
int ARKStepSolver::LinSysSolve(SUNLinearSolver LS, SUNMatrix, N_Vector x,
|
||||
@@ -1454,9 +1515,9 @@ int ARKStepSolver::LinSysSolve(SUNLinearSolver LS, SUNMatrix, N_Vector x,
|
||||
// Solve the linear system
|
||||
if (self->rk_type == IMEX)
|
||||
{
|
||||
self->f->SetEvalMode(TimeDependentOperator::ADDITIVE_TERM_2);
|
||||
self->f_arkstep->ARKSetEvalMode(ARKStepODE::ADDITIVE_TERM_2);
|
||||
}
|
||||
return (self->f->SUNImplicitSolve(mfem_b, mfem_x, tol));
|
||||
return (self->f_arkstep->ARKImplicitSolve(mfem_b, mfem_x, tol));
|
||||
}
|
||||
|
||||
int ARKStepSolver::MassSysSetup(sunrealtype t, SUNMatrix M,
|
||||
@@ -1465,8 +1526,7 @@ int ARKStepSolver::MassSysSetup(sunrealtype t, SUNMatrix M,
|
||||
ARKStepSolver *self = static_cast<ARKStepSolver*>(GET_CONTENT(M));
|
||||
|
||||
// Compute the mass matrix system
|
||||
self->f->SetTime(t);
|
||||
return (self->f->SUNMassSetup());
|
||||
return (self->f_arkstep->ARKMassSetup(t));
|
||||
}
|
||||
|
||||
int ARKStepSolver::MassSysSolve(SUNLinearSolver LS, SUNMatrix, N_Vector x,
|
||||
@@ -1477,7 +1537,7 @@ int ARKStepSolver::MassSysSolve(SUNLinearSolver LS, SUNMatrix, N_Vector x,
|
||||
ARKStepSolver *self = static_cast<ARKStepSolver*>(GET_CONTENT(LS));
|
||||
|
||||
// Solve the mass matrix system
|
||||
return (self->f->SUNMassSolve(mfem_b, mfem_x, tol));
|
||||
return (self->f_arkstep->ARKMassSolve(mfem_b, mfem_x, tol));
|
||||
}
|
||||
|
||||
int ARKStepSolver::MassMult1(SUNMatrix M, N_Vector x, N_Vector v)
|
||||
@@ -1487,7 +1547,7 @@ int ARKStepSolver::MassMult1(SUNMatrix M, N_Vector x, N_Vector v)
|
||||
ARKStepSolver *self = static_cast<ARKStepSolver*>(GET_CONTENT(M));
|
||||
|
||||
// Compute the mass matrix-vector product
|
||||
return (self->f->SUNMassMult(mfem_x, mfem_v));
|
||||
return (self->f_arkstep->ARKMassMult(mfem_x, mfem_v));
|
||||
}
|
||||
|
||||
int ARKStepSolver::MassMult2(N_Vector x, N_Vector v, sunrealtype t,
|
||||
@@ -1498,8 +1558,7 @@ int ARKStepSolver::MassMult2(N_Vector x, N_Vector v, sunrealtype t,
|
||||
ARKStepSolver *self = static_cast<ARKStepSolver*>(mtimes_data);
|
||||
|
||||
// Compute the mass matrix-vector product
|
||||
self->f->SetTime(t);
|
||||
return (self->f->SUNMassMult(mfem_x, mfem_v));
|
||||
return (self->f_arkstep->ARKMassMult(mfem_x, t, mfem_v));
|
||||
}
|
||||
|
||||
ARKStepSolver::ARKStepSolver(Type type)
|
||||
@@ -1518,13 +1577,12 @@ ARKStepSolver::ARKStepSolver(MPI_Comm comm, Type type)
|
||||
}
|
||||
#endif
|
||||
|
||||
void ARKStepSolver::Init(TimeDependentOperator &f_)
|
||||
void ARKStepSolver::Init(ARKStepODE *f_ark_)
|
||||
{
|
||||
// Initialize the base class
|
||||
ODESolver::Init(f_);
|
||||
f_arkstep = f_ark_;
|
||||
|
||||
// Get the vector length
|
||||
long local_size = f_.Height();
|
||||
long local_size = f_arkstep->ARKSize();
|
||||
#ifdef MFEM_USE_MPI
|
||||
long global_size;
|
||||
#endif
|
||||
@@ -1538,7 +1596,7 @@ void ARKStepSolver::Init(TimeDependentOperator &f_)
|
||||
}
|
||||
|
||||
// Get current time
|
||||
double t = f_.GetTime();
|
||||
double t = f ? f->GetTime() : 0.0;
|
||||
|
||||
if (sundials_mem)
|
||||
{
|
||||
@@ -1617,6 +1675,12 @@ void ARKStepSolver::Init(TimeDependentOperator &f_)
|
||||
reinit = true;
|
||||
}
|
||||
|
||||
void ARKStepSolver::Init(TimeDependentOperator &f_)
|
||||
{
|
||||
f_tdo = std::make_unique<TimeDependentOperatorWrapper>(&f_);
|
||||
Init(f_tdo.get());
|
||||
}
|
||||
|
||||
void ARKStepSolver::Step(Vector &x, real_t &t, real_t &dt)
|
||||
{
|
||||
Y->MakeRef(x, 0, x.Size());
|
||||
@@ -1709,6 +1773,9 @@ void ARKStepSolver::UseSundialsLinearSolver()
|
||||
|
||||
void ARKStepSolver::UseMFEMMassLinearSolver(int tdep)
|
||||
{
|
||||
// Check that the ODE is expressed in mass form
|
||||
MFEM_VERIFY(f_arkstep->ARKInMassForm(), "ODE operator is not in mass form.")
|
||||
|
||||
// Free any existing matrix and linear solver
|
||||
if (M != NULL) { SUNMatDestroy(M); M = NULL; }
|
||||
if (LSM != NULL) { SUNLinSolFree(LSM); LSM = NULL; }
|
||||
@@ -1739,13 +1806,13 @@ void ARKStepSolver::UseMFEMMassLinearSolver(int tdep)
|
||||
flag = MFEM_ARKode(SetMassFn)(sundials_mem, ARKStepSolver::MassSysSetup);
|
||||
MFEM_VERIFY(flag == ARK_SUCCESS,
|
||||
"error in " STR(MFEM_ARKode(SetMassFn)) "()");
|
||||
|
||||
// Check that the ODE is not expressed in EXPLICIT form
|
||||
MFEM_VERIFY(!f->isExplicit(), "ODE operator is expressed in EXPLICIT form")
|
||||
}
|
||||
|
||||
void ARKStepSolver::UseSundialsMassLinearSolver(int tdep)
|
||||
{
|
||||
// Check that the ODE is expressed in mass form
|
||||
MFEM_VERIFY(f_arkstep->ARKInMassForm(), "ODE operator is not in mass form.")
|
||||
|
||||
// Free any existing matrix and linear solver
|
||||
if (M != NULL) { SUNMatDestroy(A); M = NULL; }
|
||||
if (LSM != NULL) { SUNLinSolFree(LSM); LSM = NULL; }
|
||||
@@ -1764,9 +1831,6 @@ void ARKStepSolver::UseSundialsMassLinearSolver(int tdep)
|
||||
ARKStepSolver::MassMult2, this);
|
||||
MFEM_VERIFY(flag == ARK_SUCCESS,
|
||||
"error in " STR(MFEM_ARKode(SetMassTimes)) "()");
|
||||
|
||||
// Check that the ODE is not expressed in EXPLICIT form
|
||||
MFEM_VERIFY(!f->isExplicit(), "ODE operator is expressed in EXPLICIT form")
|
||||
}
|
||||
|
||||
void ARKStepSolver::SetStepMode(int itask)
|
||||
|
||||
+130
-2
@@ -706,9 +706,130 @@ public:
|
||||
// Interface to ARKode's ARKStep module -- Additive Runge-Kutta methods
|
||||
// ---------------------------------------------------------------------------
|
||||
|
||||
// Interface for defining ODE systems to be evolved using ARKStepSolver:
|
||||
//
|
||||
// 1) du/dt = inv(M) f(u,t) ("MFEM" form)
|
||||
// 2) M dy/dt = f(u,t) ("mass" form)
|
||||
//
|
||||
// where f(u,t) might be additively split, i.e., f(u,t) = f1(u,t) + f2(u,t)
|
||||
class ARKStepODE
|
||||
{
|
||||
|
||||
public:
|
||||
|
||||
// the size of the ODE system
|
||||
virtual int ARKSize() const = 0;
|
||||
|
||||
// return if the ODE system is of the form M du/dt = f(u,t), note the MFEM
|
||||
// default is to use the form du/dt = int(M) f(u,t)
|
||||
virtual bool ARKInMassForm() const { return false; };
|
||||
|
||||
// these flags are used by ARKStepSolver for switching between RK and ARK methods
|
||||
enum ARKEvalMode
|
||||
{ NORMAL, // evaluate f(u,t)
|
||||
ADDITIVE_TERM_1, // evaluate f1(u,t)
|
||||
ADDITIVE_TERM_2 // evaluate f2(u,t)
|
||||
};
|
||||
virtual void ARKSetEvalMode(const ARKEvalMode new_eval_mode) {}
|
||||
|
||||
// evaluate either f(u,t) (mass form) or inv(M(t)) f(u,t) (MFEM form),
|
||||
// which is necessary for solving ODEs with ERK or IMEX
|
||||
virtual void ARKEvaluateRHS(const Vector &u, const real_t t, Vector &result) const
|
||||
{
|
||||
mfem_error("This function must be specified for ERK or IMEX methods.");
|
||||
}
|
||||
|
||||
/** setup linear system for solving [M(t) - gamma Jf(u)] dk = f(u) - M(t) k,
|
||||
which is necessary for solving ODEs with DIRK or IMEX methods
|
||||
@param[in] u The state at which A(@a u,t) should be evaluated.
|
||||
@param[in] t The time at which A(u,@a t) should be evaluated.
|
||||
@param[in] v The value of inv(M) f(u,t) or f(u,t) for depending on form.
|
||||
@param[in] jok Flag indicating if the Jacobian should be updated.
|
||||
@param[out] jcur Flag to signal if the Jacobian was updated.
|
||||
@param[in] gamma The scaled time step value. */
|
||||
virtual int ARKImplicitSetup(const Vector &u, const real_t t, const Vector &v,
|
||||
int jok, int *jcur, real_t gamma)
|
||||
{
|
||||
mfem_error("This function must be specified for DIRK or IMEX methods.");
|
||||
}
|
||||
|
||||
/** solve for dk in [M - gamma Jf(u)] dk = r, where r is either
|
||||
inv(M) f(u,t) - k (MFEM form)
|
||||
f(u,t) - M k f(u) - M k (mass form)
|
||||
when using DIRK or IMEX methods
|
||||
@param[in] r inv(M) f(u,t) - k or f(u,t) - M k, depending on form.
|
||||
@param[in,out] dk On input, the initial guess. On output, the solution.
|
||||
@param[in] tol Linear solve tolerance. */
|
||||
virtual int ARKImplicitSolve(const Vector &r, Vector &dk, real_t tol)
|
||||
{
|
||||
mfem_error("This function must be specified for DIRK or IMEX methods.");
|
||||
}
|
||||
|
||||
/** for mass form ODEs using an MFEM mass solver, setup the mass linear
|
||||
system M(t) x = b
|
||||
@param[in] t The time at which M(@a t) should be evaluated. */
|
||||
virtual int ARKMassSetup(const real_t t)
|
||||
{
|
||||
mfem_error("This function must be specified to use MFEM mass solvers for mass form ODEs.");
|
||||
}
|
||||
|
||||
/** for mass form ODEs using an MFEM mass solver, solve for x in M(t) x = b
|
||||
@param[in] b The linear system right-hand side.
|
||||
@param[in,out] x On input, the initial guess. On output, the solution.
|
||||
@param[in] tol Linear solve tolerance. */
|
||||
virtual int ARKMassSolve(const Vector &b, Vector &x, real_t tol)
|
||||
{
|
||||
mfem_error("This function must be specified to use MFEM mass solver for mass form ODEs.");
|
||||
}
|
||||
|
||||
/** for mass form ODEs using an MFEM mass solver, evaluate M(t) x
|
||||
@param[in] x The vector to multiply.
|
||||
@param[out] v The result of the matrix-vector product. */
|
||||
virtual int ARKMassMult(const Vector &x, Vector &v)
|
||||
{
|
||||
mfem_error("This function must be specified to use MFEM mass solver for mass form ODEs.");
|
||||
}
|
||||
|
||||
/** for mass form ODEs using a SUNDIALS mass solver, evaluate M(t) x
|
||||
@param[in] x The vector to multiply.
|
||||
@param[in] t The time at which M(@a t) should be evaluated.
|
||||
@param[out] v The result of the matrix-vector product. */
|
||||
virtual int ARKMassMult(const Vector &x, const real_t t, Vector &v)
|
||||
{
|
||||
mfem_error("This function must be specified to use SUNDIALS mass solver for mass form ODEs.");
|
||||
}
|
||||
|
||||
};
|
||||
|
||||
/// Interface to ARKode's ARKStep module -- additive Runge-Kutta methods.
|
||||
class ARKStepSolver : public ODESolver, public SundialsSolver
|
||||
{
|
||||
|
||||
// Wrapper class to provide backwards compatability with user code that
|
||||
// derives from TimeDependentOperator instead of ARKStepODE
|
||||
class TimeDependentOperatorWrapper : public ARKStepODE
|
||||
{
|
||||
TimeDependentOperator *tdo;
|
||||
|
||||
public:
|
||||
|
||||
TimeDependentOperatorWrapper(TimeDependentOperator *f);
|
||||
|
||||
int ARKSize() const override;
|
||||
bool ARKInMassForm() const override;
|
||||
void ARKSetEvalMode(const ARKEvalMode new_eval_mode) override;
|
||||
void ARKEvaluateRHS(const Vector &u, const real_t t, Vector &result) const override;
|
||||
int ARKImplicitSetup(const Vector &u, const real_t t, const Vector &v,
|
||||
int jok, int *jcur, real_t gamma) override;
|
||||
int ARKImplicitSolve(const Vector &r, Vector &dk, real_t tol) override;
|
||||
int ARKMassSetup(const real_t t) override;
|
||||
int ARKMassSolve(const Vector &b, Vector &x, real_t tol) override;
|
||||
int ARKMassMult(const Vector &x, Vector &v) override;
|
||||
int ARKMassMult(const Vector &x, const real_t t, Vector &v) override;
|
||||
|
||||
};
|
||||
|
||||
|
||||
public:
|
||||
/// Types of ARKODE solvers.
|
||||
enum Type
|
||||
@@ -722,6 +843,8 @@ protected:
|
||||
Type rk_type; ///< Runge-Kutta type.
|
||||
int step_mode; ///< ARKStep step mode (ARK_NORMAL or ARK_ONE_STEP).
|
||||
bool use_implicit; ///< True for implicit or imex integration.
|
||||
ARKStepODE* f_arkstep;
|
||||
std::unique_ptr<TimeDependentOperatorWrapper> f_tdo; // for backwards compatibility
|
||||
|
||||
/** @name Wrappers to compute the ODE RHS functions.
|
||||
RHS1 is explicit RHS and RHS2 the implicit RHS for IMEX integration. When
|
||||
@@ -784,14 +907,19 @@ public:
|
||||
then ARKStepReInit() will be called in the next call to Step(). If the
|
||||
problem size has changed, the ARKStep memory is freed and realloced
|
||||
for the new problem size. */
|
||||
/** @param[in] f_ The TimeDependentOperator that defines the ODE system
|
||||
/** @param[in] f_ The ARKStepODE that defines the ODE system
|
||||
|
||||
@note All other methods must be called after Init().
|
||||
|
||||
@note If this method is called a second time with a different problem
|
||||
size, then any non-default user-set options will be lost and will need
|
||||
to be set again. */
|
||||
void Init(TimeDependentOperator &f_) override;
|
||||
void Init(ARKStepODE *f_ark_);
|
||||
|
||||
// This method is provided for backwards compatibility with classes that
|
||||
// derive TimeDependentOperator instead of ARKStepODE; however, those classes
|
||||
// should be migrated.
|
||||
MFEM_DEPRECATED void Init(TimeDependentOperator &f_) override;
|
||||
|
||||
/// Integrate the ODE with ARKode using the specified step mode.
|
||||
/**
|
||||
|
||||
Reference in New Issue
Block a user