Brendan Keith
e7e0ed79e6
fixed BC issue
2024-04-14 14:59:23 -04:00
Brendan Keith
7359466ce4
fix sign error
2024-04-12 08:12:42 -04:00
Brendan Keith
d5814b9d8e
fixed invertibility bug
2024-04-11 22:28:15 -04:00
Brendan Keith
7dd2312ec4
minor
2024-04-11 18:56:53 -04:00
Brendan Keith
aa25a12086
changing to direct solver
2024-04-11 18:05:56 -04:00
Brendan Keith
3341feb1d3
linearized problem solved. memory leak
2024-04-11 17:37:39 -04:00
Brendan Keith
a6f7baeede
fixed the runtime issues with integrators
2024-04-10 11:32:58 -04:00
Brendan Keith
bc2ee7f3a9
layout of ex40.cpp done
2024-04-10 10:17:49 -04:00
Brendan Keith
2bcae01f71
outline of MA code
2024-04-09 21:17:45 -04:00
Brendan Keith
cde13ad145
Merge branch '2x2_matrix_exponential' into MA
2024-04-09 15:26:27 -04:00
Brendan Keith
6baf95a686
Merge branch 'master' into 2x2_matrix_exponential
2024-04-09 07:00:04 -04:00
Tzanio Kolev
91710623f8
Merge pull request #4203 from mfem/stefanozampini/petsc-3.21
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Changes to support PETSc 3.21 (to be released March 29th) and single precision builds
2024-04-08 06:22:04 -07:00
Tzanio Kolev
eddecd5dc6
PETSc version requirement updated to 3.21
2024-04-08 06:21:15 -07:00
Brendan Keith
4ebbbc45ae
override
2024-04-07 22:20:52 -04:00
Brendan Keith
77a3bb103c
style
2024-04-07 22:12:02 -04:00
Brendan Keith
f728fadcf7
more work on ex40
2024-04-07 22:11:21 -04:00
Brendan Keith
ae3b9e23e7
Merge branch 'master' into 2x2_matrix_exponential
2024-04-07 22:09:37 -04:00
Brendan Keith and Dohyun Kim
0494eb22e6
Update fem/coefficient.hpp
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Co-authored-by: Dohyun Kim <dhkim.cse@gmail.com >
2024-04-07 22:08:55 -04:00
Brendan Keith and Dohyun Kim
31a977ac5f
Update fem/coefficient.cpp
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Co-authored-by: Dohyun Kim <dhkim.cse@gmail.com >
2024-04-07 22:08:33 -04:00
Tzanio Kolev
f7b104b4be
Merge pull request #4225 from adam-sim-dev/pardiso-fix
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Fix Pardiso for single precision
2024-04-07 13:01:26 -07:00
Veselin Dobrev
9d4bceaaa3
Merge pull request #4227 from mfem/bugfix/tomstitt/support-partial-gpu-compiles
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Better GPU Guards in `config.hpp`
2024-04-06 18:37:51 -07:00
Brendan Keith
3db9688894
Merge branch '2x2_matrix_exponential' into MA
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Adding coefficients from 2x2_matrix_exponential
2024-04-06 15:33:30 -04:00
Brendan Keith
821c41fba9
remove comments
2024-04-06 11:50:53 -04:00
Brendan Keith
af5a7844a8
test for MatrixArrayVectorCoefficient
2024-04-06 11:16:53 -04:00
adam-sim-dev
f95d82011b
Merge branch 'master' into pardiso-fix
2024-04-06 19:15:42 +08:00
Brendan Keith
9bfa6c051e
Merge branch 'master' into 2x2_matrix_exponential
2024-04-05 18:04:26 -04:00
Brendan Keith
850f0f7e89
typo
2024-04-05 17:45:10 -04:00
Brendan Keith
90ecbf2bfb
Adding TraceCoefficient
2024-04-05 17:44:29 -04:00
Brendan Keith
b0a3350622
added MatrixArrayVectorCoefficient clas
2024-04-05 17:40:59 -04:00
Tzanio Kolev
5bde929475
Merge pull request #4135 from mfem/const-hypreparmatrix-blocks
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Require `const HypreParMatrix*` in `HypreParMatrixFromBlocks()`
2024-04-05 10:03:23 -07:00
Tzanio Kolev
4306815658
Merge pull request #4226 from mfem/najlkin/revert-blockop
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Reverted the change of const qualifiers in BlockOperator
2024-04-05 10:02:43 -07:00
Tzanio Kolev
23b956e834
Merge pull request #4113 from mfem/bugfix/submesh-rt
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Boundary attribute transfer to ParSubMesh
2024-04-05 10:02:05 -07:00
Brendan Keith
3f45c0a9d7
Merge branch '2x2_matrix_exponential' of github.com:mfem/mfem into 2x2_matrix_exponential
2024-04-05 12:38:40 -04:00
Brendan Keith
18bee592c4
move test out of #ifdef MFEM_USE_LAPACK
2024-04-05 12:38:35 -04:00
Brendan Keith
d9dc18c32b
starting ex40
2024-04-05 12:36:35 -04:00
Brendan Keith and Dohyun Kim
bc0ab53d19
Update linalg/densemat.cpp
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Co-authored-by: Dohyun Kim <dhkim.cse@gmail.com >
2024-04-05 08:45:33 -04:00
Brendan Keith
99db13a3c2
missing break;
2024-04-04 17:22:06 -04:00
Brendan Keith
4dcb5933a9
bug in switch
2024-04-04 17:11:32 -04:00
Brendan Keith
1f5f30c9c4
3x3 abort message
2024-04-04 16:27:45 -04:00
Brendan Keith
d453981d3c
style
2024-04-04 16:09:13 -04:00
Brendan Keith
00bf53ed90
introduce the ExponentialMatrixCoefficient class
2024-04-04 15:48:32 -04:00
adam-sim-dev
0a512877b6
Merge branch 'master' into pardiso-fix
2024-04-04 07:44:03 +08:00
Tom Stitt and Veselin Dobrev
eb8ceb35a7
Update config/config.hpp
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Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com >
2024-04-03 15:28:19 -07:00
Tzanio Kolev
056a321bb0
Merge pull request #4044 from mfem/named-attr-sets
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Named attribute sets
2024-04-03 13:42:46 -07:00
Tom Stitt
d42e79f8da
check for device compiler in addition to MFEM_USE_{CUDA,HIP} for defining __host__ __device__; adds back support for libraries that use mfem and do partial gpu builds
2024-04-03 13:32:24 -07:00
aa1d6441f8
General hyperbolic class and Refactored Ex18, Ex18p ( #3598 )
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* include cfl
* include 2x2 periodic mesh to have 2^N elements.
* include computation of initial max char speed for t=0
* reorder classes to avoid incomplete type
* fix function spaces for solution variables
* Initial conditions and problems. Not yet done I think
* problem setting
* begin time stepping implementation
* Initial state assignment
* arg parser!
* default periodic square mesh updated
it seems that 2x2 periodic mesh does not work.
-> This is because 2x2 contains both 0->1 edge and 1->0 edge on the boundary
due to periodic constraint.
I believe that is why 3x3 elements are used in the data folder.
* correct errors in euler flux functions
* General Hyperbolic Form updated
* Burgers example included
* Rename FE_Evolution to HCL
* Give operators more meaningful names
* remove Aflux and include divA.
This will allow us to update operators within HCL class
* Allow variable size of invMe to handle p-refine.
invMe Type: DenseTensor -> vector<DenseMatrix>
* Update method included for HCL.
It is not tested yet.
Also, since Operator does not have Update method,
we needed to restrict Operator to NonlinearForm
* Finalize update functionality. Visualization not yet implemented.
Tested with derefine and refine after system construction.
Current code seems to give correct result.
May require further verification.
* update burgers equation
* Fix 1-d bug!
As MFEM positive/negative elements ordering
does not respect the original mesh ordering,
normal vector can be positive or negative in 1D.
We check this by checking integration point is either right or left for 1D.
* move global constants (num_eq, gas.. etc) inside of the classes
* revert back visualization code.
* Add comments and reorder classes
* Remove redundant example code as it is not used anymore.
* rename and move problem-specific defintions to cpp files
* Merged debugged code.
* shallow water an example with periodic boundary included
* rename num_equation to num_equations and include GetIntRule
* Element-wise form integrator for further refactoring
* just testing...
* rename to DGHyperbolicConservationLaws
* max_char_speed now shared by pointer
* use reference instead of pointer
* Rename HCL class to DGHCL
* Form now have pointer to max_char_speed which points to HCL class max_char_speed.
max_char_speed is not exposed to outside.
Use getter instead.
* MPI_Reduce -> MPI_All_Reduce as all workers share the same max_char_speed
* rename faceform to hyperbolic faceform
* Include HyperbolicElementForm for accurate flux evaluation
* Rename form to formintegrator as this is appropriate name
* evaluation template for element assembly
* funval -> state for readibility
* fix bug in the arguments of AssembleElementVector
* compute flux now takes correct function arguments
* ElementFormIntegrator is done. Not yet tested.🤞
* Euler problem is verified.
Burgers and shallow water will be updated
* correct typo Hyperboilic.... :(
* Burgers done. Euler typo fixed
* Shallow water also done!
* Shallow water gauss bump problem included
* include transformations to flux evaluation functions
* This fixes Allow HCL flux functions utilize space-dependent evaluation dohyun-cse/mfem#1 .
Advection equation is now included
* Now DGHCL takes nonlinear form as an input argument to handle ParNonlinearForm
* Parallel euler implementation
* remove hello from..
* print function updated
* code cleanup
* Euler cleanup and parallel version bug fix
* Burgers code cleanup and parallel implementation
* shallow water updated.
* advection serial parallel done.
* correct typo in option (parallel refine)
* move hyperbolic_conservation_laws file to fem folder
* include path update
* Take NonlinearForm as reference, not a pointer. Updated Makefile, too.
* Documentation and change some variable names
* form integrators are now in heap memory to avoid malloc error
* changed nonlinear form as a pointer
It seems that PyMFEM does not like reference of nonlinear form... :(
* ignore generated files
* max_char_speed get set method instead of pointer
* nonilnForm pointer update
* nonlinearForm pass by reference
* typo correction
* Test for PyMFEM.. Other examples are not updated yet
* example scripts updated
* ternary to max function
* simplify creating parallel version.
* p-refinement done. test needed.
* testing begins!
* update procedure for main class is included.
* Testing. Still having problem. Not identified yet
* Correct size, but incorrect values.
* p-refinement done and remove nonlinear form exposure.
Parallel checking is done by dynamic_cast.
Therefore, there is no reason to expose nonlienar form to user.
This simplifies class creation :)
* p-refinement test done.
It seems that p-refinement does not result in more accurate solution.
* add option for refinement. h-refinement impl start
* h-refine works fine, but threshold should be modified to obtain bounded number of elements.
* namespace update
* examples tested.
* h-refinement done. Update marking procedure by using confidence interval
* formatting and remove cout from derefine
* include adaptive code to make file
* visualization update
* NumericalFlux -> RiemannSolver
* It seems that set is ambiguous for SWIG..
* comment on hDerefine and now use VectorFunctionCoefficient for IC and Velocity
* testing....
* make flux related methods public
* remove commented out codes
* make style
* doxygen update
* update ex18 with new implementation
* Combine Element/Face Form integrators.
* astyle
* remove redundant ;
* remove refinement procedures.
* thread safe clause
* remove using namespace from hpp file
* ProlongToMaxOrderDG included with interpolation
* remove lambda_function type and return VectorFunctionCoeff for initial/velocity
* removed sinpi
* Some comments
* remove other examples and style
* remove examples not included anymore
* std::cout to mfem::out and correct minor bugs
* ignore mesh file
* update makefile
* remove MPI from serial
* remove unused captured variables in lambda functions
* style
* remove ex34 from makefile and reorder initialization
* remove initialization for auxiliary variables in formintegrator
* remove gas constant from the euler system
* fix broken parts due to uninitialization
* move initialization of local variables inside of FormIntegrator constructor
* forgot to update the other constructor!
* ignore mesh and gridfunctions
* resolved memory leak. Need to check
* remove pragma omp atomic
* remove delete nonlinearForm
* resolve shadowing
* correct dof report and remove barrier in visualization
* forgot to update variable name in euler form
* nonlinearForm memory leak resolved.
destructor of nonlinearForm always delete integrators.
This results in double deletion of the form integrator if we use for both domain and face integration.
To resolve this issue, just create two integrators and pass it to nonlinearForm
* proper header setting and faster test by reducing mesh size
* delete ex18.hpp
* move lengthy functions to cpp
* header order changed
* simpler inclusion.. still have duplicated symbols
* resolved linker problem and include pnonlinear
* remove commented out functions
* documentation
* fixing memory leak..
* delete nonlinearForm
* formatting
* distclean update
* Ignore binaries and result files
* copyright
* Riemann solver comment, input updated.
Riemann solver is now passed as reference
* pass riemann solver by reference
* move default normal flux eval to cpp
* Advection uses inferred dimension from velocity field
* integration rule uses Jacobian order, too
* delete not implemented
* mark override
* format
* unique ptr and mark override
* use single HyperbolicFormIntegrator
* static GetRule
* proper creation without copying
* proper jacobian order in GetRule
* moved member function implementation to cpp file
* new line
* pass by reference
* removed 4x4 mesh and update ignore
* doxygen updated
* remove constructor with integration rule.
Users can set integration rule via NonlinearFormIntegrator::SetIntRule
* useExternalData to indicate ownership of integrator for nonlinear form
* extract flux function from the form integrator
As suggested by @pazner, flux function is now seperated from form integrator. By doing so, riemann solver takes simpler argument but can access to equation-specific information.
* documentation
* documentation --
* initialization order
* update naming of form integrators
* initialization order...
* use normal wavespeed
* shorter Rusanov flux evaluation
* minor code style update
See, https://github.com/mfem/mfem/pull/3598#pullrequestreview-1803234677
* fix syntax error due to pointer -> reference
* std::
* Update fem/nonlinearform.hpp
Co-authored-by: Will Pazner <11493037+pazner@users.noreply.github.com >
* return Mesh instead of string
* Moved DG to ex18.hpp and other styling updates
- Ex18p not yet updated
* update similar to previous commit
* remove ResetMaxChar in the constructor + comment update
Since reset max char will be called each Mult() call, we do not need reset in the constructor
* comment and include functional
* removed inlined namewspace
* style
* move common functions to hpp
* formatting and minor fixes in parallel code.
* update filename and fix typo in `GetMovingVortexInit`
* add hyperbolic to changelog and ex18 comment update
* removed Kelvin–Helmholtz instability example
It is hard to get a satisfactory result with the current DG method without additional treatment.
* fluxFunction is now input of RiemannSolver::Eval instead of being a member.
* compatibility check between flux function and Riemann solver
Some Riemann solver are system-specific. Such Riemann solver can prevent user-error by overriding `IsCompatible`.
* More error-proofing constructors of `RiemannSolver` and `HyperbolicFormIntegrator`
* documentation
* header file description updated
* add examples in the comment
* style
* copyright update
* use unique_ptr in the constructor to make ownership clear
* removed unused member, dim
* Some minor edits, mostly formatting
* add option for pre-assembly
* remove unused ComputeFlux
* keep momentum variable as in serial code
* Fix warnings
* preassembly by default and minor optimization
* remove mutable vector and revert back variable name
flux is now a local variable that changes size at each element. So, it would better to remove it from member variables.
* std::sqrt instead of sqrt
* another minor optimization
* rename options and add comments
* linearized->interpolated
* typo correction in comment
* remove auto from example
Co-authored-by: Chris Vogl <vogl2@llnl.gov >
* Comment update
Correct condition check comment on weak-divergence, and additional comments on auxiliary variable
* Momentum for visualization should be shifted.
FE implementation is correct, but visualization was using u[0,dim). It should be u[1,dim) and now fixed.
* example comments
* style..
* strangely, a trailing space was not updated.
* Fix the thread-safe build. Some doxygen and formatting tweaks.
* fix doxygen error
* Some small tweaks in ex18/ex18p; remove small diffs between the
serial and the parallel versions.
* Small formatting tweaks in ex18.hpp
* unused problem mesh transform
* Remove transformation dependent integration order
* Minor formatting
* support general precision
* format
---------
Co-authored-by: adam-sim-dev <adam.d.schmidt@hotmail.com >
Co-authored-by: Will Pazner <11493037+pazner@users.noreply.github.com >
Co-authored-by: Veselin Dobrev <dobrev@llnl.gov >
Co-authored-by: Chris Vogl <vogl2@llnl.gov >
Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com >
2024-04-03 13:30:41 -07:00
Jan Nikl
6289562498
Fixed BDPMinresSolver.
2024-04-03 10:11:47 -07:00
Jan Nikl
5b79660c96
Fixed Block*Preconditioner comments.
2024-04-03 10:02:54 -07:00
Jan Nikl
cf5af75215
Revert "Added const qualifiers to Operator arguments of BlockOperator."
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This reverts commit d843cd6e8a .
2024-04-03 09:24:42 -07:00
adam-sim-dev
1bd99dde78
Merge branch 'master' into pardiso-fix
2024-04-03 23:57:27 +08:00
Tzanio Kolev
687ef84488
Merge pull request #4056 from mfem/yohann/fa-dg-amr
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Add support for `AssemblyLevel::FULL` for DG on `NCMesh`.
2024-04-03 08:34:29 -07:00
adam-sim-dev
6fab40ce8b
Fix Pardiso for single precision
2024-04-03 22:52:47 +08:00
Eric B. Chin
215cb4c585
Merge branch 'master' into const-hypreparmatrix-blocks
2024-04-02 14:02:12 -07:00
Eric B. Chin
4c93ddddc3
fn sig spacing
2024-04-02 13:59:02 -07:00
Stowell, Mark L
d61d1159ec
Re-enforcing "max boundary attribute + 1" convention
2024-04-02 12:24:04 -07:00
Tzanio Kolev
558bb87bab
Merge pull request #4015 from mfem/tmop-pa-diag-fix
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TMOP PA diagonal kernels with non-diagonal targets.
2024-04-02 12:07:25 -07:00
Stowell, Mark L
496d083c63
Removing device sample runs
2024-04-02 11:26:24 -07:00
Yohann
61cf6735db
Update fem/restriction.cpp
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Omitted `double`
2024-04-02 09:32:30 -07:00
Yohann
c0924ad9e6
Apply suggestions from code review
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Replace `double` with `real_t`.
2024-04-02 09:31:51 -07:00
Stefano Zampini
040ae1609b
Merge remote-tracking branch 'origin/master' into stefanozampini/petsc-3.21
2024-04-02 12:04:25 +02:00
Stefano Zampini
503a2e2529
ex3p: Skip unsupported PETSc version in three dimensions
2024-04-02 12:00:51 +02:00
Tzanio Kolev
7bf2a79920
Merge pull request #4151 from mfem/ProjectBdrCoefficient-par-consistency
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Broadcast values to other processors to have a consistent GridFunction
2024-03-31 10:41:55 -07:00
Tzanio Kolev
1d37883cc7
Merge pull request #4211 from mfem/hypre-sync-fix
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Fix a synchronization issue with some HypreParMatrix constructors
2024-03-31 10:41:02 -07:00
Veselin Dobrev
442360f80d
In the GNU make build system, creating an archive from all unit
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test object files does not work with Catch2. Instead, combine the
object files into a single object file using 'ld -r'.
2024-03-30 23:29:56 -07:00
Veselin Dobrev
731ea03c80
In the GNU make build system, create an archive from all unit test
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object files to avoid a linking issue with long link commands and
CUDA.
2024-03-30 20:39:17 -07:00
Veselin Dobrev
891b17221e
Fix nvcc warning
2024-03-30 14:38:19 -07:00
Veselin Dobrev
8af7493023
Add ex38,ex39,ex39p to the GNU make build system.
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Updated ex38.cpp to return MFEM_SKIP_RETURN_VALUE when MFEM is
built without LAPACK.
In the examples CMakeLists.txt, treat ex38 similar to other tests
that are conditionally skipped.
2024-03-30 14:09:01 -07:00
Tzanio Kolev
0181312468
Optional visualization in Example 34/34p
2024-03-29 16:21:04 -07:00
Stowell, Mark L
49bff9daef
Fixing GLVis output which gets passed the -no-vis option
2024-03-28 14:24:39 -07:00
Veselin Dobrev
2970564990
In the TMOP method/kernel AssembleDiagonalPA_Kernel_3D, add limits
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on D1D and Q1D for CUDA/ROCM that are specific to this kernel.
2024-03-27 22:04:12 -07:00
Veselin Dobrev
4fb4ab4397
In the TMOP method/kernel AssembleDiagonalPA_Kernel_3D, reduce the
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size of the required shared memory and some other small tweaks.
2024-03-27 19:30:33 -07:00
Veselin Dobrev
a3fd440078
Merge branch 'master' into tmop-pa-diag-fix
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Resolved conflicts:
fem/tmop/tmop_pa_h2d.cpp
fem/tmop/tmop_pa_h3d.cpp
2024-03-27 15:34:51 -07:00
Stowell, Mark L
386fa30275
Merge remote-tracking branch 'origin/master' into named-attr-sets
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# Conflicts:
# CHANGELOG
# mesh/mesh.hpp
2024-03-27 13:52:45 -07:00
Stowell, Mark L
56c76c0d16
double -> real_t
2024-03-27 13:07:27 -07:00
Stowell, Mark L
094346dc9e
Merge remote-tracking branch 'origin/master' into bugfix/submesh-rt
2024-03-27 13:06:49 -07:00
Julian Andrej
1ec42ff5c1
remove include
2024-03-27 11:58:22 -07:00
Julian Andrej
6a1cf0d4f1
guard tests for real_t
2024-03-27 11:38:44 -07:00
Julian Andrej
c2dc05c433
change to real_t
2024-03-27 11:35:13 -07:00
Stowell, Mark L
74e4f76268
Re-enabling corrected unit test
2024-03-26 19:35:49 -07:00
Stowell, Mark L
7d3906e67c
Switching to modified unit test
2024-03-26 18:55:13 -07:00
Stowell, Mark L
9a4398cb66
make style
2024-03-26 18:45:14 -07:00
Stowell, Mark L
fd5e104558
Re-enabling new unit test
2024-03-26 18:33:43 -07:00
Veselin Dobrev
5485f2becf
Merge branch 'master' into ProjectBdrCoefficient-par-consistency
2024-03-26 18:28:09 -07:00
Stowell, Mark L
b778e649d6
Adding new miniapps to gitignore
2024-03-26 17:04:38 -07:00
Veselin Dobrev
ecb72984e0
The meshing miniapp 'pmesh-fitting' should now work with hypre build
...
with GPU support.
2024-03-26 16:54:50 -07:00
Veselin Dobrev
c0e6dc573b
Merge branch 'master' into hypre-sync-fix
2024-03-26 16:50:29 -07:00
Stowell, Mark L
5b481db1a3
Disabling new or modified unit tests
2024-03-26 16:40:36 -07:00
Stowell, Mark L
a0f4cc6790
Adding testing of new miniapps
2024-03-26 16:05:32 -07:00
Stowell, Mark L
f315883342
Merge branch 'bugfix/submesh-rt' of github.com:mfem/mfem into bugfix/submesh-rt
2024-03-26 15:15:05 -07:00
Stowell, Mark L
c5e74c1b6a
Adding new miniapps to to make and cmake files
2024-03-26 15:14:24 -07:00
Stowell, Mark L
63d33a88be
Improving visualization in new miniapps
2024-03-26 15:13:41 -07:00
Stefano Zampini
ed39df11da
Fix single precision examples and SLEPc
2024-03-27 00:05:52 +03:00
Stefano Zampini
38c9bc75b5
PETSc: last updates to real_t
2024-03-26 23:10:40 +03:00
Stefano Zampini
440be80704
Merge branch 'stefanozampini/petsc-3.21' of github.com:mfem/mfem into stefanozampini/petsc-3.21
2024-03-26 23:09:34 +03:00
Stefano Zampini
a79c2b81cd
PETSc: update to real_t
2024-03-26 23:07:55 +03:00
Stefano Zampini
a2734e6888
Fix hybridization example
2024-03-26 23:03:59 +03:00
Stefano Zampini
d26ea85877
Merge remote-tracking branch 'origin/master' into stefanozampini/petsc-3.21
2024-03-26 22:20:57 +03:00
Julian Andrej
6a301e2a31
initialize gridfunction
2024-03-26 12:18:07 -07:00
Tzanio Kolev
bcdf7cc648
Merge pull request #3922 from mfem/float
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Generalize floating point type
2024-03-26 12:08:04 -07:00
Veselin Dobrev
0110cb715d
Resolve the issue described in the parent commit
2024-03-25 23:00:16 -07:00
Veselin Dobrev
4e80106811
Add a set of tests that illustrate an issue with some HypreParMatrix
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constructors that wrap external data (SparseMatrix or Table) and
reorder it to make the diagonal entry first in each row.
The issue only appears when using HYPRE + CUDA/ROCM build.
This commit can be used to see the issue by running either of
the unit tests, 'punit_tests' or 'pcunit_tests'.
The issue will be resolved in the next commit to this branch.
2024-03-25 22:51:55 -07:00
Veselin Dobrev
8487564f0d
Merge branch 'master' into float
2024-03-25 13:07:23 -07:00
Veselin Dobrev
f37a8142cb
Update two doxygen comments
2024-03-25 13:05:43 -07:00
Veselin Dobrev
7be646b8ce
Fix the HIP build with single precision.
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Fix warnings about RAND_MAX when using single precision.
Introduce an inline function `real_t rand_real()` that returns a
random number in the interval [0,1) using rand(). This function
handles better the case of single precision where the expression
`real_t(rand())/(real_t(RAND_MAX)+1)` can return 1.0f due to round-off
when rand() returns a number close to RAND_MAX.
Use `rand_real()` in a few places that before used code similar to
`real_t(rand())/(real_t(RAND_MAX)+1)`.
2024-03-24 10:43:15 -07:00
Veselin Dobrev
ad32ab68e0
In the CMake build system add the cublas dependency of hypre.
2024-03-23 17:26:01 -07:00
Veselin Dobrev
91204ea52e
Update the CMake build system to conditionally exclude tests that
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return MFEM_SKIP_RETURN_VALUE under certain config conditions. These
exclusions will need to be updated manually when a test is modified
to return or no longer return MFEM_SKIP_RETURN_VALUE.
Added some tests missing from the CMake tests compared to the
GNU make tests.
2024-03-23 16:15:46 -07:00
Vladimir Z Tomov
8c98ecbf91
fixed some tolerances during testing.
2024-03-22 23:48:18 -07:00
Veselin Dobrev
dcc81ec67f
Add early "skip" exit in the miniapp 'pmesh-fitting' when using hypre
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build with GPU support -- there are error messages about non-SPD
operator in the 'lin_solver' in ParAdvectorCGOper::Mult().
2024-03-22 19:02:05 -07:00
Veselin Dobrev
a974d724ef
Instantiate Memory<T>::PrintFlags() and
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Memory<real_t>::CompareHostAndDevice() for T = real_t
instead of T = double.
Extend Vector and DenseMatrix constructors from fixed size
arrays of type real_t to any type T -- this was one simple way
to get the tests to build with nvcc with single precision.
Fix the building of tests/unit/linalg/test_matrix_hypre.cpp with
single precision when using hypre built with GPU support.
Fix a warning from nvcc in miniapps/tools/tmop-check-metric.cpp.
2024-03-22 18:12:49 -07:00
Socratis Petrides
c3a56ba4b5
Merge branch 'master' into bugfix/submesh-rt
2024-03-22 12:47:26 -07:00
Veselin Dobrev
90d3a987fe
Modified the unit tests to print that they are not supported with
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single precision and return the "skip" exit code.
2024-03-22 11:31:45 -07:00
Veselin Dobrev
5e778cdb1f
Increase a tolerance for single precision in 'navier_kovasznay' to
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allow the test to pass with additional compilers/platforms.
2024-03-21 17:47:47 -07:00
Veselin Dobrev
a0a2fe2128
Introduce separate tolerances for single precision in the navier
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miniapp.
2024-03-21 17:30:33 -07:00
Veselin Dobrev
c57ef1cd2d
Remove diplicate output of MFEM_USE_SINGLE in 'make info'
2024-03-21 16:16:44 -07:00
Veselin Dobrev
6facf1d3c0
Fix the single precision tests of the miniapps 'navier_kovasznay' and
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'block-solvers'.
2024-03-21 15:24:31 -07:00
Veselin Dobrev
7b20790ded
Mentioned the "General floating point type support" discussion in
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CHANGELOG and INSTALL.
Added MFEM_PRECISION to the output from 'make info'.
2024-03-21 12:02:49 -07:00
Tzanio Kolev
189d4d7900
Merge pull request #4199 from mfem/gitlab-quartz-baseline-switch
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Update the GitLab "quartz-baseline" pipeline to use the Quartz-specific baseline results
2024-03-20 10:59:55 -07:00
Sebastian Grimberg
79d0284b3d
Further examples/petsc style consistency
2024-03-20 09:09:46 -07:00
Sebastian Grimberg
e51be179a4
Consistency with ex14p and ex17p
2024-03-20 09:06:50 -07:00
Sebastian Grimberg
2cbbbe09d4
Fix typo (EX2_ARGS_BDDC_3D -> EX3_ARGS_BDDC_3D) and text wrapping
2024-03-20 09:03:29 -07:00
Tzanio Kolev
8c2212c457
Merge pull request #4121 from mfem/artv3/raja-v2023.06.01-update
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Update RAJA for v2023.06.00 and beyond
2024-03-20 07:28:18 -07:00
Stefano Zampini
19154e65ba
add 3D HCURL bddc test to CMakeList
2024-03-20 16:02:19 +03:00
Veselin Dobrev
6f37514d3f
In the GNU make and CMake build systems, modify how the floating-point
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precision is specified: it is now controlled by the single option
MFEM_PRECISION (single/Single/SINGLE/double/Double/DOUBLE) which is
converted into settings for MFEM_USE_SINGLE and MFEM_USE_DOUBLE which
are then used as before.
2024-03-19 15:32:15 -07:00
Stefano Zampini
e34c323edf
Petsc: Support 3.21
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add missing 3D Hcurl test (fixed in PETSc main) see https://github.com/mfem/mfem/issues/4050
PetscH2Solver::H2SolverConstructor fix ignored error codes
2024-03-19 17:33:03 +03:00
Veselin Dobrev
1314428770
Fix two 'make test' failures in a CUDA build using HYPRE+CUDA.
2024-03-18 17:53:18 -07:00
Veselin Dobrev
e7400c2552
Make mfem::operator""_r a host+device function -- this was needed to
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suppress nvcc warning.
Mention MFEM_USE_{SINGLE,DOUBLE} in the INSTALL file.
Other small updates.
2024-03-18 13:40:22 -07:00
Dylan Copeland
64fa92bb1c
Introducing ""_r for casting to real_t.
2024-03-18 12:32:46 -07:00
Veselin Dobrev
f12827db31
Tweak ex25/ex25p to try to remove diffs with 'master'
2024-03-18 06:30:14 -07:00
Veselin Dobrev
d66d1f4cd9
Move up MFEM_USE_{SINGLE,DOUBLE} in the output from 'make info'
2024-03-18 06:23:42 -07:00
Veselin Dobrev
b7a47d21f5
In quartz-baseline.yml, check for “baseline-quartz.diff” instead of “baseline-${SYS_TYPE}.diff”
2024-03-17 19:13:56 -07:00
Veselin Dobrev
6b566568f1
In the GitLab "quartz-baseline" pipeline, use result files with
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prefix "baseline-quartz".
2024-03-17 15:52:11 -07:00
Veselin Dobrev
c201035164
Move the MFEM_USE_{DOUBLE,SINGLE} options closer to the beginning
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of the various config settings -- they are important settings and
should appear earlier.
Move the definition of mfem::real_t to config.hpp along with some
macros from globals.hpp -- I think this a better place for them.
Added support for single precision to ex10 and ex10p.
Added explicit compile time checks and error messages to make
sure HYPRE is compiled with the same precision as MFEM.
Fixed an issue affecting the visualization of the results from
ex10 and ex10p on nonconforming meshes.
2024-03-16 11:32:11 -07:00
Dylan Copeland
c87b67e4f6
Reverting some changes to abs, min, max.
2024-03-16 11:10:06 -07:00
Veselin Dobrev
3122df854e
Fixes for building examples and miniapps in single precision mode
2024-03-15 16:32:39 -07:00
Dylan Copeland
81affd9558
Merge branch 'master' of github.com:mfem/mfem into float
2024-03-15 13:03:21 -07:00
Dylan Copeland
d57b1d8a2e
Some complex fixes.
2024-03-15 12:59:28 -07:00
Tzanio Kolev
37e03ab550
Merge pull request #4198 from mfem/ci-sanitize-update
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Workaround for the sanitizer failures
2024-03-15 12:50:32 -07:00
Dylan Copeland
36e4caff61
Revert branch-history
2024-03-15 12:11:20 -07:00
Dylan Copeland
c009fb9bde
Merge branch 'master' of github.com:mfem/mfem into float
2024-03-15 11:31:39 -07:00
Veselin Dobrev
d9fe115eb9
Add a temoprary workaround based on
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https://github.com/actions/runner-images/issues/9491
Fix a warning in the "build-container" action.
2024-03-15 10:39:14 -07:00
Veselin Dobrev
c23cbdf0d1
Try to use clang 15 in the sanitizers CI to see if that solves the
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recent failures of this action which uses clang 14.
2024-03-15 09:31:34 -07:00
Veselin Dobrev
daff379773
Merge pull request #4173 from mfem/feature/tomstitt/avoid-some-memcpys
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Avoid some unnecessary memcpys
2024-03-15 09:08:23 -07:00
Mark L. Stowell
8dde119d0c
Merge branch 'master' into bugfix/submesh-rt
2024-03-14 11:30:49 -07:00
Stowell, Mark L
d9b5b6c11c
Cleaning up comments in new multidomain miniapps
2024-03-14 11:29:00 -07:00
Tzanio Kolev
ac88580605
Merge pull request #4187 from mfem/fix/block-solver-hypre-error
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Fix hypre error in block solver
2024-03-14 09:12:54 -07:00
Tzanio Kolev
ad0feb11ac
Merge pull request #4067 from mfem/diagonal-pa-markers
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Add attribute marker support for AssembleDiagonalPA
2024-03-14 09:12:38 -07:00
Julian Andrej
a6254e863f
includes
2024-03-13 13:49:58 -07:00
Julian Andrej
eefada3110
correction
2024-03-13 12:14:13 -07:00
Julian Andrej
8adfc1c557
provide unit test
2024-03-13 11:59:47 -07:00
Vladimir Z Tomov
2ef8230757
Merge branch 'master' into tmop-pa-diag-fix
2024-03-13 08:55:39 -07:00
Vladimir Z Tomov
241a5ca8a3
style
2024-03-12 22:39:54 -07:00
Vladimir Z Tomov
587c8950ee
Improved the 3D diagonal PA computation.
2024-03-12 22:38:33 -07:00
Vladimir Z Tomov
efc5e8e8eb
Improved the 2D diagonal PA computation.
2024-03-12 22:09:37 -07:00
Sebastian Grimberg
8c41990e58
Fix bug for libCEED backends
2024-03-12 11:46:48 -07:00
Chak Shing Lee
3f5e45242a
fix the way we eliminate Hcurl essential dofs
2024-03-11 20:56:18 -07:00
Veselin Dobrev
58aaa226e5
Merge pull request #4156 from mfem/feature/iterative-solver-virtual-norm
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Make IterativeSolver::Dot virtual to enable custom inner products in derived solvers
2024-03-11 19:46:54 -07:00
Tzanio Kolev
70941b49b1
Merge pull request #4084 from mfem/mem_inact
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[Enzyme] Mark additional memmanager fn/vars as inactive
2024-03-07 08:09:06 -08:00
Dylan Copeland
d2e89166f9
Merge branch 'master' of github.com:mfem/mfem into float
2024-03-05 10:23:02 -08:00
Tzanio Kolev
94aeedce94
Merge pull request #3648 from mfem/nurbs-ref-formula
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NURBS refinement by formulas
2024-03-05 09:11:57 -08:00
Seth Watts
80d0281784
Fix formatting
2024-03-04 15:21:41 -08:00
Seth Watts
3106d3883b
Further docs updates from PR request; fix formatting
2024-03-04 15:19:49 -08:00
Seth Watts
97bdd3c188
Attempt to manually fix styling
2024-03-04 12:43:02 -08:00
Seth Watts
936f0f3f9f
Update documentation based on PR feedback
2024-03-04 12:11:05 -08:00
Tom Stitt
c43da76cff
only ReadWrite eadata if add==true, other just Write
2024-03-04 12:02:24 -08:00
Seth Watts
0fb42c387b
Switch from virtual Norm to virtual Dot
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Based on PR feedback, switch to virtual Dot so that Norm method is always
consistent, i.e., it is always an inner product norm. This is important to
avoid inconsistent inner products and norms in concrete derived solvers.
2024-03-04 11:11:14 -08:00
Julian Andrej
20c9a68ee9
remove comments
2024-03-04 08:08:04 -08:00
Dylan Copeland
cd2d93e822
Fix partially overriden NURBSUniformRefinement function.
2024-03-03 19:57:15 -08:00
Dylan Copeland
a71af01887
Bug fix for linear spacing.
2024-03-03 19:45:14 -08:00
William S. Moses
e6f687d5af
fix style
2024-03-01 16:10:01 -05:00
Julian Andrej
6dc01f9737
prefix macros with MFEM_
2024-03-01 13:00:53 -08:00
William S. Moses
7bd4738564
fix
2024-03-01 14:41:17 -05:00
William S. Moses
e1e4ec6f95
try again
2024-03-01 14:34:45 -05:00
William S. Moses
925f4dc7de
try docs again
2024-03-01 14:27:01 -05:00
Julian Andrej
a14fea50f6
Revert "change order of attribute and comment for doxygen"
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This reverts commit fdc724036d .
2024-03-01 08:50:37 -08:00
Julian Andrej
fdc724036d
change order of attribute and comment for doxygen
2024-03-01 08:42:01 -08:00
Stowell, Mark L
91bcdd1ab2
Mostly documentation and style fixes
2024-02-29 14:17:22 -08:00
Stowell, Mark L
dd02c49856
Exchanging floating point for integer
2024-02-29 13:54:14 -08:00
Stowell, Mark L
35c2fc9a79
Adding RT to the pre-existing ParSubMesh unit tests
2024-02-29 10:55:19 -08:00
Stowell, Mark L
7d149334b6
make style
2024-02-29 10:54:46 -08:00
Julian Andrej
2c4672dd26
fix compilation
2024-02-29 10:49:35 -08:00
Julian Andrej
2260cbbdd4
Merge remote-tracking branch 'origin/master' into mem_inact
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# Conflicts:
# general/error.hpp
2024-02-29 10:45:32 -08:00
Julian Andrej
b5e9b21370
make style
2024-02-29 10:41:22 -08:00
Stowell, Mark L
eeb2eb2a07
Fix for boundaries of 2D meshes
2024-02-28 15:50:39 -08:00
Stowell, Mark L
5ffbee1199
Adding unit test for parallel sub-meshes with interior boundaries
2024-02-28 13:16:56 -08:00
Mark L. Stowell
001e3cd8fc
Merge branch 'master' into bugfix/submesh-rt
2024-02-28 10:57:22 -08:00
Tzanio Kolev
edcd7ee0ea
Merge pull request #4149 from mfem/old-doxygen-filter-fix
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Support older doxygen versions to some extend: fix the INPUT_FILTER handling
2024-02-27 21:28:38 -08:00
Stowell, Mark L
954b3dce73
Updating examples
2024-02-27 21:02:45 -08:00
Stowell, Mark L
c521b4b8d6
Changing AttributeSets into a simple wrapper class around ArraysByName
2024-02-27 20:18:07 -08:00
Stowell, Mark L
e5508fc1b4
Clarifying documentation
2024-02-27 20:17:17 -08:00
Stowell, Mark L
3f0e74c732
Merge branch 'named-attr-sets' of github.com:mfem/mfem into named-attr-sets
2024-02-27 19:14:11 -08:00
Mark L. Stowell
c87a46f4b3
Merge branch 'master' into named-attr-sets
2024-02-27 19:12:58 -08:00
Stowell, Mark L
cbf819362d
Fixing doxygen reference errors
2024-02-27 19:10:05 -08:00
Stowell, Mark L
08c25c64cf
Removing Mesh::AttrToMarker and adding similar limited functionality to the AttributeSets class
2024-02-27 17:30:51 -08:00
William S. Moses
cfde6fed39
fixup
2024-02-27 20:08:45 -05:00
Seth Watts
cc5dcee3b3
Make IterativeSolver::Norm virtual to enable custom norms in derived solvers
2024-02-27 07:51:58 -08:00
Stowell, Mark L
be4089e9be
Modifying output format as discussed in a meeting
2024-02-26 16:41:49 -08:00
Stowell, Mark L
1c95d630ba
Creating Print* methods on the AttributeSets class so that the output width can be defined in one location
2024-02-26 16:41:00 -08:00
Stowell, Mark L
1281f0de29
Trimming examples
2024-02-26 16:37:58 -08:00
Stowell, Mark L
0645d5eca5
Removing unnecessary file
2024-02-26 16:37:30 -08:00
Stowell, Mark L
c8a68cf60e
Updating copyright dates
2024-02-26 13:11:27 -08:00
dylan-copeland
d9fa483c70
Update copyright year.
2024-02-26 10:13:00 -08:00
dylan-copeland
c866fefed1
Merge branch 'master' of github.com:mfem/mfem into nurbs-ref-formula
2024-02-26 10:03:47 -08:00
Tzanio Kolev
44e9f62af1
Merge pull request #4073 from mfem/nlf-boundaryintegrators-dev
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Addition of Boundary Integration to `NonlinearForm`s [nlf-boundaryintegrators-dev]
2024-02-25 16:08:28 -08:00
Tzanio Kolev
c512d36e70
Merge pull request #4139 from mfem/fix-smem-pa-hdiv-mass-apply-2d
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In SmemPAHdivMassApply2D<D1D,Q1D>, fix the case when D1D < Q1D
2024-02-25 16:07:25 -08:00
Tzanio Kolev
57fee17ad7
Merge pull request #4134 from mfem/FindPointsGSLIB-empty-partition-fix
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FindPoints fix for empty partition
2024-02-25 16:06:59 -08:00
Julian Andrej
2f94ba3786
Broadcast values to other processors to have a consistent GridFunction
2024-02-23 13:27:58 -08:00
Veselin Dobrev
d8733d4bf9
Add quotes to the command for the INPUT_FILTER doxygen setting.
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This allows older versions of Doxygen (tested with 1.8.14) to apply
the filter correctly.
2024-02-22 14:40:44 -08:00
Tzanio Kolev
9a21f59e60
Merge pull request #4126 from mfem/nurbs-helper-dev
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NURBS dof functions [nurbs-helper-dev]
2024-02-21 12:23:56 -08:00
Tzanio Kolev
5b7e80c3d1
Merge pull request #4059 from mfem/integrate-qfunction
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QuadratureFunction::Integrate
2024-02-21 12:23:27 -08:00
Stowell, Mark L
668ad9a800
Adding unit tests (and fixing newly uncovered bugs) for sorting and removing duplicates in ArraysByName
2024-02-20 14:28:42 -08:00
Stowell, Mark L
c795d6bd00
Adding class description for ArraysByName
2024-02-20 14:27:28 -08:00
Stowell, Mark L
0f862ccfc3
Adding unit tests of sorting and removing duplicates from arrays
2024-02-20 14:26:32 -08:00
Stowell, Mark L
d64cb93f89
Updating copyright dates
2024-02-20 14:25:39 -08:00
Stowell, Mark L
dfa86e0668
Improved comments in new examples
2024-02-20 14:25:01 -08:00
Tzanio Kolev
409e8328f4
Merge pull request #4103 from mfem/doxy-math-dev
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Better math in code comments
2024-02-19 15:51:11 -08:00
Tzanio Kolev
f238ba54ec
Merge branch 'master' into doxy-math-dev
2024-02-19 15:08:45 -08:00
Tzanio Kolev
1be2cea900
Merge pull request #4034 from mfem/getbdrelementadjacentelement2-rename
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Rename Mesh::GetBdrElementAdjacentElement2 to Mesh::GetBdrElementAdjacentElementWithInverseOrientation
2024-02-19 15:06:56 -08:00
Tzanio Kolev
8132d10cdd
Fix math style in comments
2024-02-19 15:05:20 -08:00
Tzanio Kolev
04abf688f7
Merge branch 'master' into doxy-math-dev
2024-02-19 15:00:50 -08:00
Tzanio Kolev
28527c59c6
Merge pull request #4120 from mfem/cmake-cxx-std-fix
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In CMake, allow users to configure the C++ standard and some related options
2024-02-19 14:59:48 -08:00
Veselin Dobrev
de445cbeb2
In SmemPAHdivMassApply2D<D1D,Q1D>, fix the case when D1D < Q1D.
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Note: such cases are currently not instatiated in the library.
Reported-by: Tom Stitt <tomstitt@users.noreply.github.com >
2024-02-17 13:41:41 -08:00
Will Pazner
d461ee1bca
Update nodes_sequence more places in Mesh
2024-02-15 17:15:10 -08:00
Arturo Vargas
5c9d9aca95
Merge branch 'master' into artv3/raja-v2023.06.01-update
2024-02-14 09:09:20 -08:00
Arturo Vargas
3224d79ee5
Update CHANGELOG
2024-02-14 09:08:57 -08:00
Eric B. Chin
8a1e61967a
Merge branch 'master' into const-hypreparmatrix-blocks
2024-02-13 16:51:03 -08:00
Eric B. Chin
5a15bbe2e9
reordering functions, add doxygen
2024-02-13 16:50:38 -08:00
Eric B. Chin
2887738161
add deprecated version
2024-02-13 16:43:33 -08:00
Veselin Dobrev
db77249ac0
Merge pull request #4003 from mfem/multigrid-ess-dof-fix
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Fix handling of essential DOFs in GeometricMultigrid
2024-02-13 12:51:43 -08:00
Tzanio Kolev
b32b9f0517
Merge pull request #4089 from mfem/det-surface
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Make GeometricFactors::DETERMINANTS work with surface meshes
2024-02-13 12:13:31 -08:00
Tzanio Kolev
f3022bcf43
Merge pull request #4101 from mfem/sjg/elasticity-integ-using
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Silence partial override warnings from #3806
2024-02-13 12:12:56 -08:00
Tzanio Kolev
8ba0ca7f84
Merge pull request #4058 from mfem/sjg/getnodalvalues-device-fix
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Fix GridFunction::GetNodalValues when the vector has use_dev = true
2024-02-13 12:12:05 -08:00
Will Pazner
4df15bf526
Early return in QuadratureSpaceBase::GetWeights with empty mesh partitions
2024-02-12 17:12:42 -08:00
Eric B. Chin
e428593ab0
formatting
2024-02-12 15:17:46 -08:00
Eric B. Chin
f0a9546c03
add const to hypreparmatrix pointers
2024-02-12 15:10:48 -08:00
Veselin Dobrev
1b76dbd97c
In the constructor of class GeometricMultigrid, allow the input
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array ess_bdr to be empty.
2024-02-11 21:02:43 -08:00
Arturo Vargas
e939e4e432
fix raja logic
2024-02-11 13:58:43 -08:00
Tzanio Kolev
dd49332094
Merge pull request #3862 from mfem/block-solvers/bramble-pasciak-dev
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Add Bramble-Pasciak solver to the block-solvers miniapp [block-solvers/bramble-pasciak-dev]
2024-02-10 18:31:40 -08:00
Tzanio Kolev
3cb5367a63
Merge pull request #4040 from mfem/constrained-transpose-dev
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Implement `MultTranspose` for `ConstrainedOperator`.
2024-02-10 18:31:06 -08:00
Stowell, Mark L
cdaabd67ee
Recreating interior boundary elements in submeshes
2024-02-10 14:13:49 -08:00
Stowell, Mark L
950fd77063
Adding explanatory comments and switching to FaceInformation struct for cleaner code
2024-02-10 13:35:32 -08:00
Stowell, Mark L
e2c9258889
Communicating interior boundary attributes during ParSubMesh construction
2024-02-10 11:57:01 -08:00
Stowell, Mark L
f62bf0bb6b
merging master into current branch
2024-02-10 11:55:40 -08:00
Stowell, Mark L
37578e2fb8
Replacing multidomain_rt.cpp which was accidentally overwritten
2024-02-09 15:12:26 -08:00
Will Pazner
57e3102935
Deprecate GeometricMultigrid constructor without essential boundaries
2024-02-09 10:43:58 -08:00
Will Pazner
b785573016
Merge remote-tracking branch 'origin/master' into multigrid-ess-dof-fix
2024-02-09 10:42:34 -08:00
Tzanio Kolev
0b75f6caca
Merge pull request #4109 from mfem/bugfix/submesh-issue-4107
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Fix for issue 4107 in ParSubMesh
2024-02-09 08:16:43 -08:00
Tzanio Kolev
53693305dd
Merge pull request #4098 from mfem/mesh-geom-comment
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Update mesh file comments
2024-02-09 08:15:50 -08:00
JacobLotz
3cdc57e906
clean up
2024-02-09 14:00:45 +01:00
JacobLotz
26a480f831
Add two functions
2024-02-09 13:58:06 +01:00
Socratis Petrides
9364fc377f
minor
2024-02-08 15:25:00 -08:00
Tzanio Kolev
f5f62ac93c
Update tests/unit/mesh/test_geometric_factors.cpp
2024-02-08 10:42:53 -08:00
Will Pazner
eea68c8b96
Merge remote-tracking branch 'origin/master' into integrate-qfunction
2024-02-08 10:27:39 -08:00
Will Pazner
fbe53c7548
Move forall kernel out of QuadratureSpaceBase::ConstructWeights
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Fix nvcc issue: '__host__ __device__ lambda cannot have private or
protected access within its class'
2024-02-08 09:09:11 -08:00
Will Pazner
a67d9f9158
Replace all calls to Mesh::GetBdrElementBaseGeometry with Mesh::GetBdrElementGeometry
2024-02-07 10:38:41 -08:00
Will Pazner and Veselin Dobrev
11f6944a82
Update fem/geom.cpp
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Co-authored-by: Veselin Dobrev <v-dobrev@users.noreply.github.com >
2024-02-07 10:38:06 -08:00
Arturo Vargas
b54f08a765
update raja for v2023.06.01 and beyond
2024-02-07 10:30:22 -08:00
Will Pazner
76006e9b14
Fix typo
2024-02-07 09:32:45 -08:00
Veselin Dobrev
ec804f711f
In the CMake build system, fix a bug where the C++ standard,
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CMAKE_CXX_STANDARD, and related CMake flags cannot be set at
config time by the user.
Reported-by: @cyrush (issue #4117 )
2024-02-07 09:21:43 -08:00
victor-decaria-nnl
5957cf2e43
Update test_operator.cpp
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explicitly write 0 as 0.0
2024-02-07 11:01:34 -05:00
victor-decaria-nnl
7039f52ed6
Update operator.hpp
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Make override notation consistent with rest of class
2024-02-07 10:40:32 -05:00
victor-decaria-nnl
db5ba25e2f
Merge branch 'master' into constrained-transpose-dev
2024-02-07 10:33:05 -05:00
Will Pazner
b553219eb9
Merge remote-tracking branch 'origin/master' into getbdrelementadjacentelement2-rename
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# Conflicts:
# mesh/mesh.cpp
2024-02-06 16:10:43 -08:00
Will Pazner
231b0970e1
Wrap long lines
2024-02-06 16:06:49 -08:00
Will Pazner
74e31a4216
Check for compatible dimensions in QuadratureInterpolator determinant computation
2024-02-06 16:03:51 -08:00
Mittal, Ketan
66d8a7a958
fix ptr for empty partition
2024-02-06 15:45:25 -08:00
Vladimir Z Tomov
706ef524c7
Merge branch 'master' into nlf-boundaryintegrators-dev
2024-02-06 12:31:03 -08:00
Tomov
b90039cbbf
style
2024-02-06 12:17:57 -08:00
Tomov
2a75319cc9
minor
2024-02-06 12:14:42 -08:00
Tomov
df69bdacd0
Added a unit test.
2024-02-06 12:13:09 -08:00
Dylan Copeland
61f950a68d
Defined and documented magic number for skipped test return value. Changed errors for failing tests to return this value.
2024-02-06 12:07:29 -08:00
Dylan Copeland
046a874cfb
Merge branch 'master' of github.com:mfem/mfem into float
2024-02-06 10:56:41 -08:00
Tzanio Kolev
5339837bd3
Merge pull request #4053 from mfem/solvers-dox
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Solvers dox
2024-02-05 16:53:56 -08:00
Will Pazner
6db3c3b136
Bugfix
2024-02-05 11:31:23 -08:00
Will Pazner
2e71be8a83
Split Det2D into Det2D and Det2DSurface
2024-02-05 11:24:15 -08:00
Justin Laughlin
7e7f1df500
Merge branch 'master' into mesh-geom-comment
2024-02-05 10:40:02 -08:00
Sebastian Grimberg
5480f0833f
Fix missing using in ElasticityComponentIntegrator
2024-02-05 08:38:18 -08:00
Stowell, Mark L
970833e98c
Adding ND and RT variants of multidomain miniapp
2024-02-04 20:19:02 -08:00
Stowell, Mark L
ef07982ea4
Removing variants of multidomain miniapp
2024-02-04 20:16:40 -08:00
Stowell, Mark L
5ddf07f7cd
Merge branch 'bugfix/submesh-issue-4107' of github.com:mfem/mfem into bugfix/submesh-issue-4107
2024-02-04 13:04:46 -08:00
Stowell, Mark L
4107b6605c
ND and RT variants of multidomain miniapp
2024-02-04 13:03:08 -08:00
Gabriel Esteban Pinochet Soto
4e247edd8a
Small typo
2024-02-04 00:25:41 -08:00
Gabriel Esteban Pinochet Soto
9857d6a987
Apply correction from d53f982
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- Remove repeated constructors from the wrapper ex5 in
div_free_solver.xpp
- Append "const" in concordance to d53f982 in file darcy_solver.xpp
2024-02-04 00:09:16 -08:00
Gabriel Pinochet Soto and Tzanio Kolev
60aa4a04fc
Apply suggestions from code review
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Co-authored-by: Tzanio Kolev <tzanio@llnl.gov >
2024-02-04 00:06:14 -08:00
Tzanio Kolev
444815b74b
Typo
2024-02-03 16:05:12 -08:00
Tzanio Kolev
0aa21d66c4
Update CONTRIBUTING.md
2024-02-03 16:01:53 -08:00
Tzanio Kolev
b86173353c
Converted a few Doxygen-style math formulas
2024-02-03 15:56:34 -08:00
Tzanio Kolev
3f6f94f7a2
Mention math in comments in CONTRIBUTING, add a check for old style
2024-02-03 15:54:00 -08:00
Gabriel Esteban Pinochet Soto
5637e30f96
Remove typos. Update Copyright.
2024-02-03 14:58:25 -08:00
Gabriel Esteban Pinochet Soto
2a86934778
Update CHANGELOG. Update Copyright.
2024-02-03 14:44:38 -08:00
Tzanio Kolev
d53f982761
Merge branch 'master' into block-solvers/bramble-pasciak-dev
2024-02-03 14:31:32 -08:00
Tzanio Kolev
1f4ff30101
Merge branch 'master' into bugfix/submesh-issue-4107
2024-02-03 14:27:46 -08:00
Tzanio Kolev
33617ce3a7
Merge pull request #4066 from mfem/el_transform_back
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Add optional tolerance to ElmentTransformation::TransformBack
2024-02-03 14:24:07 -08:00
Tzanio Kolev
bc3373ec09
Merge pull request #4064 from mfem/constrained-operator-addmult
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Override AddMult for ConstrainedOperator
2024-02-03 14:23:34 -08:00
Tzanio Kolev
3dda9a5042
Merge pull request #4078 from mfem/najlkin/misc-bugfix
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Various minor bug/deficiency fixes
2024-02-03 14:22:35 -08:00
Stowell, Mark L
b87027927f
Uncommenting calls to earlier communication code
2024-02-02 17:13:56 -08:00
Gabriel Esteban Pinochet Soto
91b9d9dc92
Update copyright
2024-02-02 13:16:40 -08:00
Tzanio Kolev and Dennis Ogiermann
7d2b5b8e07
Update doc/CodeDocumentation.conf.in
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Co-authored-by: Dennis Ogiermann <termi-official@users.noreply.github.com >
2024-02-02 11:25:09 -08:00
Tzanio Kolev
b666ec0c93
Merge pull request #4077 from mfem/najlkin/sparsemat-print-fix
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Fix and improvement of the print methods in SparseMatrix
2024-02-01 17:52:55 -08:00
Tzanio Kolev
a1ceea97fb
Trying to fix Doxygen GitHub CI
2024-02-01 17:35:25 -08:00
Jan Nikl
4a421e6c1f
Added notes about synchronization to the print methods.
2024-02-01 14:41:03 -08:00
Gabriel Pinochet Soto
ca46e03800
Merge branch 'master' into block-solvers/bramble-pasciak-dev
2024-02-01 12:44:47 -08:00
Tzanio Kolev
44d33d17f3
Switch to MathJax_3
2024-02-01 11:48:14 -08:00
Sebastian Grimberg
4caab0f153
Resolve Doxygen error (docstring is already in the base class)
2024-02-01 08:55:18 -08:00
Will Pazner
58319e5f94
Mark ConstrainedOperator::~ConstrainedOperator as override
2024-02-01 06:48:52 -08:00
Tzanio Kolev and Will Pazner
c03968e614
Update doc/CodeDocumentation.conf.in
...
Co-authored-by: Will Pazner <11493037+pazner@users.noreply.github.com >
2024-01-31 16:16:40 -08:00
Vladimir Tomov
04a7dad296
Update amgxsolver.hpp
2024-01-31 15:43:50 -08:00
Tzanio Kolev
eaec7fcbba
Merge branch 'master' into doxy-math-dev
2024-01-31 14:50:04 -08:00
Tzanio Kolev
71ab3f2856
Filter to use plain instead of Doxygen-style LaTeX in comments
2024-01-31 14:44:37 -08:00
Tzanio Kolev
b17f011297
Merge branch 'master' into sjg/getnodalvalues-device-fix
2024-01-31 13:19:06 -08:00
Tzanio Kolev
8ec618739c
Merge branch 'master' into najlkin/sparsemat-print-fix
2024-01-31 13:19:01 -08:00
Tzanio Kolev
9bd163dc1d
Merge branch 'master' into el_transform_back
2024-01-31 13:18:52 -08:00
Tzanio Kolev
4e4c97b4dd
Merge branch 'master' into constrained-operator-addmult
2024-01-31 13:18:29 -08:00
Sebastian Grimberg
eed6842c00
Silence many compiler warnings about partial overrides
2024-01-31 11:25:03 -08:00
Aaron Fisher
208db48024
Fixed a capitalization in the dox
2024-01-31 11:07:04 -08:00
Aaron Fisher
bfe3c8f070
Merge branch 'master' into solvers-dox
2024-01-31 11:04:10 -08:00
Tzanio Kolev
da1a96477f
Merge pull request #4093 from mfem/2024-copyright
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Update COPYRIGHT to 2010-2024
2024-01-31 06:34:05 -08:00
Tzanio Kolev
1fcb4e4d03
Merge pull request #4090 from mfem/actions-nodejs-update
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Bump GitHub actions versions
2024-01-31 06:33:45 -08:00
Dylan Copeland
6c07599447
Replace mesh/geom.hpp with fem/geom.hpp in mesh file comments.
2024-01-30 21:01:34 -08:00
Robert Carson
d64fb2c5a5
Merge branch 'master' into el_transform_back
2024-01-30 17:31:23 -08:00
Robert Carson
1deac8c6bf
Add documentation for new param in ElementTransformation::TransformBack
2024-01-30 17:30:28 -08:00
Tzanio Kolev
7261837f95
Merge branch 'master' into 2024-copyright
2024-01-30 11:52:35 -08:00
Socratis Petrides
0ad4acf6a5
edits to mumps interface to accomodate single precision
2024-01-29 17:55:00 -08:00
Socratis Petrides
097e93e4ab
adjusting some dpg sample runs to accomodate single precision
2024-01-29 17:52:27 -08:00
Tzanio Kolev
2458a62361
Merge pull request #3972 from mfem/bilinearform-dox
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Doxygen improvements to bilinearform
2024-01-27 19:37:23 -08:00
Tzanio Kolev
de328c333c
Merge pull request #4087 from mfem/quartz-timeout
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Increase time for testing on Quartz from 45 to 60 minutes
2024-01-27 13:23:53 -08:00
Tzanio Kolev
87290fbf56
Update Copyright to 2010-2024
2024-01-27 13:06:49 -08:00
Veselin Dobrev
f345e14543
Merge pull request #4081 from mfem/bugfix-lorelast
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Bugfix for lor elasticity miniapp kernel
2024-01-26 11:01:07 -08:00
Will Pazner
b2c17a5c3a
Bump GitHub actions versions
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Node.js 16 actions are deprecated, this updates to the versions of the actions
using Node.js 20.
2024-01-26 10:13:58 -08:00
Will Pazner
7a8294dd42
Make GeometricFactors::DETERMINANTS work with surface meshes
2024-01-25 23:38:33 -08:00
Tzanio Kolev
77c8eeb8ea
Use CI reservation on Quartz
2024-01-25 14:50:23 -08:00
Dylan Copeland
81054158c9
Remove unnecessary copy constructors.
2024-01-25 11:54:29 -08:00
dylan-copeland
f6266d9c86
Copy constructors for all classes derived from SpacingFunction.
2024-01-25 10:11:36 -08:00
William S. Moses
372358f7e9
mark read/write as dynamic-cast like
2024-01-25 12:36:58 -05:00
William S. Moses
549774f4c2
make docs okay with attributes
2024-01-25 12:09:16 -05:00
Tzanio Kolev
d959baa18a
Increase time for testing on Quartz from 45 to 60 minutes
2024-01-25 09:03:13 -08:00
Jan Nikl
3ae6ec61e5
Changed using to stub for ParMesh::FaceIsTrueInterior().
2024-01-25 08:59:41 -08:00
dylan-copeland
3cc2fbe2aa
Fix mac build.
2024-01-24 22:00:01 -08:00
Dylan Copeland
a8bb51b18e
Reformat long lines.
2024-01-24 21:14:20 -08:00
William S. Moses
cc2365869d
[Enzyme] Mark additional memmanager fn/vars as inactive
2024-01-25 00:08:46 -05:00
Dylan Copeland
6e269b0cef
Using unique_ptr instead of raw pointers.
2024-01-24 20:58:12 -08:00
Jan Nikl
ae2443eded
Added a unit test for sparse matrix printing.
2024-01-24 15:22:06 -08:00
Jan Nikl
c3a455d86f
Fixed auto reference in div_free_solver.
2024-01-24 12:23:20 -08:00
Aaron Fisher
650387111d
Addressing some more copy edits.
2024-01-24 11:58:16 -08:00
Aaron Fisher
6239b924ad
Merge branch 'master' into solvers-dox
2024-01-23 16:49:33 -08:00
Aaron Fisher
332528b068
Addressed typos found in review, broke up comments to keep within the 80 line limit.
2024-01-23 16:48:26 -08:00
Dylan Copeland
ba37ea1ec1
Write v1.0 file when there are no spacing formulas. Update CHANGELOG.
2024-01-23 13:19:05 -08:00
Julian Andrej
2950d62c49
bugfix for lor elasticity miniapp kernel
2024-01-23 13:10:47 -08:00
Aaron Fisher
ecfe032565
make style
2024-01-23 12:29:25 -08:00
Aaron Fisher
c0f969def9
Fixed a doxygen error and some link warnings.
2024-01-23 12:28:24 -08:00
Aaron Fisher
44c6cf4c13
make style
2024-01-23 11:40:09 -08:00
Aaron Fisher
15e887969a
Fixed lines that were longer than 80 chars.
2024-01-23 11:38:56 -08:00
Aaron Fisher
c613091a32
Merge branch 'master' into bilinearform-dox
2024-01-23 11:22:32 -08:00
Dylan Copeland
424f1306dd
GetFineKnots return by value.
2024-01-23 10:59:32 -08:00
Dylan Copeland
3b0db206dd
Merge branch 'master' of github.com:mfem/mfem into nurbs-ref-formula
2024-01-23 10:47:40 -08:00
dylan-copeland
d2c1ead422
Restore destructors.
2024-01-23 09:27:59 -08:00
dylan-copeland
9ab210fcee
Another attempt at SpacingFunction initialization.
2024-01-23 09:09:05 -08:00
dylan-copeland
765c23e9f3
Doxygen fix
2024-01-22 23:17:07 -08:00
dylan-copeland
773be1fa98
Adjust last commit.
2024-01-22 23:13:09 -08:00
dylan-copeland
d74f6f03d4
Review suggestions.
2024-01-22 23:01:40 -08:00
Jan Nikl
7a2ab45ae0
Fixed div-free solver miniapp to work with constant operators.
2024-01-22 16:55:41 -08:00
Jan Nikl
a0ae98f400
Added const qualifier to boundary attributes in ParGridFunction projection methods.
2024-01-22 16:23:43 -08:00
Jan Nikl
20dbb8efba
Added support of integral elements to L2 error.
2024-01-22 14:38:02 -08:00
Jan Nikl
2d582d80c9
Added const qualifier for boundary attributes in GridFunction projection methods.
2024-01-22 14:38:02 -08:00
Jan Nikl
63c9716056
Fixed VectorDiffusionOperator::AssembleElementVector().
2024-01-22 14:38:02 -08:00
Jan Nikl
55a35c8818
Fixed boundary trace integration in MixedBilinearForm.
2024-01-22 14:38:02 -08:00
Jan Nikl
e311b00349
Added closed GL quadrature into the closed ones.
2024-01-22 14:38:02 -08:00
Jan Nikl
34aac72833
Added default NULL value of the integration rule for quadrature integrators as it is not used anyway.
2024-01-22 14:38:02 -08:00
Jan Nikl
755eb9d65f
Added const qualifier to quadrature function coefficient.
2024-01-22 14:38:02 -08:00
Jan Nikl
f8040db3ec
Made available FaceIsTrueInterior in ParMesh as it is supposed to be probably.
2024-01-22 14:38:02 -08:00
Jan Nikl
d843cd6e8a
Added const qualifiers to Operator arguments of BlockOperator.
2024-01-22 14:38:02 -08:00
Jan Nikl
1a9cf065d9
Adding printing of non-finalized sparse matrices.
2024-01-22 13:38:50 -08:00
Jan Nikl
19d1c7226e
Fixed printing methods of sparse matrices on devices.
2024-01-22 13:38:35 -08:00
Jan Nikl
4c547f52c2
Minor optimization of SparseMatrix::EliminateCol().
2024-01-22 10:16:37 -08:00
Joseph Signorelli
88fe87f4bc
Application of make style
2024-01-20 17:48:20 -06:00
Stowell, Mark L
bc44bb9ebf
Removing unused instantiations to avoid errors in CI
2024-01-19 11:22:58 -08:00
Stowell, Mark L
bec527fe0b
Removing unit tests related to convertible type methods
2024-01-19 10:57:56 -08:00
Stowell, Mark L
68d117accd
Merge remote-tracking branch 'origin/master' into named-attr-sets
...
# Conflicts:
# tests/unit/CMakeLists.txt
2024-01-19 10:44:59 -08:00
Stowell, Mark L
047acf0b7c
Fixing corner case where attribute arrays are zero length
2024-01-19 10:41:44 -08:00
dylan-copeland
7ad98e4952
Fix shadowed variable.
2024-01-18 15:33:32 -08:00
Dylan Copeland
1959a5c613
New NURBS mesh file format with spacing formulas in their own section.
2024-01-18 13:12:20 -08:00
Will Pazner
8d234b5358
Make sure cache in QuadratureSpaceBase::GetWeights is invalidated properly
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Add unit test to test this case
2024-01-17 22:17:25 -08:00
Will Pazner
6d35c65f95
Add Mesh::nodes_sequence to track geometric factor invalidation
2024-01-17 22:16:35 -08:00
Will Pazner
4bfe05a9a5
Use InnerProduct instead of operator* in QuadratureFunction::Integrate
2024-01-17 21:47:00 -08:00
Stowell, Mark L
1009445194
Fixing Mesh::AttrToMarker when attrs is empty.
2024-01-17 21:25:26 -08:00
Stowell, Mark L
5f72e2d601
Declaring Mesh::AttrToMarker as static
2024-01-17 21:15:21 -08:00
Stowell, Mark L
b23efc92df
Tweaking "inline" declarations in header
2024-01-17 21:08:53 -08:00
Stowell, Mark L
495c730f39
Trimming the example codes
2024-01-17 21:07:57 -08:00
dylan-copeland
64fcc9d3b3
Remove spacing keyword.
2024-01-17 17:49:20 -08:00
dylan-copeland
cc33cfdfc6
Reverting to sign trick, to eliminate "spacing" keyword in knotvectors. Reverting appveyor.yml.
2024-01-17 17:34:48 -08:00
Stowell, Mark L
8680ca4bcf
Moving templated code to header and adding more template instantiations
2024-01-17 17:06:10 -08:00
Aaron Fisher
404db17f43
Merge branch 'master' into bilinearform-dox
2024-01-17 16:18:02 -08:00
Aaron Fisher
56d59c8e71
make style
2024-01-17 16:15:17 -08:00
Stowell, Mark L
0364c990a0
Merge remote-tracking branch 'origin/master' into named-attr-sets
2024-01-17 08:25:21 -08:00
dylan-copeland
a8c0f7122b
appveyor
2024-01-16 21:18:32 -08:00
Dylan Copeland
9c5d160ebc
Merge branch 'master' of github.com:mfem/mfem into nurbs-ref-formula
2024-01-16 21:00:07 -08:00
Dylan Copeland
0c14bb478b
Only debug build for appveyor.
2024-01-16 20:15:58 -08:00
Dylan Copeland
b3bec4d97e
appveyor.yml
2024-01-16 19:08:48 -08:00
Stowell, Mark L
23a7b101cd
Removing GetNames(set<string>&) method in favor of returning by value
2024-01-16 16:46:21 -08:00
Stowell, Mark L
599ee41f2f
Replacing call to removed "Copy" method
2024-01-16 16:25:24 -08:00
Stowell, Mark L
ed95441729
Removing "Copy" method and declaring copy/move constructors and operators as "default"
2024-01-16 12:24:23 -08:00
Stowell, Mark L
f273eea4c6
Updating unit test to check all copy/move constructors and assignment operators
2024-01-16 12:23:37 -08:00
Stowell, Mark L
ed8fa3a89b
Fixing comparison in unit test
2024-01-14 15:29:07 -08:00
Stowell, Mark L
ec92ba8aa4
Removing custom iterator headache (thanks @pazner!)
2024-01-14 15:17:10 -08:00
Stowell, Mark L
dfd7376d74
More "friend" fixes
2024-01-14 14:47:32 -08:00
Stowell, Mark L
3abd1bd2d1
Typo in doxygen command
2024-01-14 14:43:05 -08:00
Stowell, Mark L
2b3b8a9ee6
Adjusting "friend" declarations to satisfy different compilers
2024-01-14 14:23:18 -08:00
Stowell, Mark L
64521d5848
Fixing errors found by CI
2024-01-14 12:02:06 -08:00
Stowell, Mark L
f6dfb11945
Merge remote-tracking branch 'origin/master' into named-attr-sets
...
# Conflicts:
# mesh/mesh.hpp
2024-01-14 11:40:43 -08:00
Stowell, Mark L
64e11cce6b
Manually adjusting indenting to conform to standard style (not sure why astyle failed to modify this)
2024-01-14 11:13:57 -08:00
Stowell, Mark L
3b4ea628f0
Altering Mesh and the new examples to use the new AttributeSets container class
2024-01-14 11:06:45 -08:00
Stowell, Mark L
b9e7116648
Adding unit tests for the new container class
2024-01-14 11:05:24 -08:00
Stowell, Mark L
f6e13f92c0
Adding an AttributeSets class for use within the Mesh class
2024-01-14 11:04:11 -08:00
Stowell, Mark L
c57e1c33c9
Adding a container class for maps of arrays keyed by strings
2024-01-14 11:02:05 -08:00
Gabriel Pinochet Soto
5f79b7b9be
Merge branch 'master' into block-solvers/bramble-pasciak-dev
2024-01-14 01:43:22 -08:00
Will Pazner
f6e89b638e
Add attribute marker support for AssembleDiagonalPA
...
Add unit test for PA diagonal assembly with element and boundary attribute
markers.
Resolves #3998 .
2024-01-12 21:56:25 -08:00
Robert Carson
6c4f179751
make style
2024-01-11 10:56:53 -08:00
Robert Carson
c54bc0aa55
Add ability to set tolerance in TransformBack func of the ElementTransformation class
2024-01-11 10:48:14 -08:00
Will Pazner
68e513c40e
Use Write instead of ReadWrite in TensorProductPRefinementTransferOperator
...
Can avoid some unnecessary H to D memcpy
2024-01-11 10:06:28 -08:00
Will Pazner
a8708fc6ca
Override AddMult for ConstrainedOperator
...
Use existing workspace vector to avoid extra allocations
2024-01-10 09:43:43 -08:00
Stowell, Mark L
341e00aa09
Adding return by value options for sets of set names
2024-01-09 10:42:43 -08:00
Stowell, Mark L
d90a567378
Removing unneeded scopes
2024-01-09 10:28:42 -08:00
Stowell, Mark L
37f9fc565d
make style
2024-01-08 15:46:44 -08:00
Stowell, Mark L
860e16f693
Modifying CHANGELOG
2024-01-08 15:46:33 -08:00
Stowell, Mark L
373d088d0c
Renaming new examples and editing their headers
2024-01-08 15:42:58 -08:00
Will Pazner
2fc95046d4
Add QuadratureSpaceBase::Integrate for vdim > 1
2024-01-08 12:02:20 -08:00
Will Pazner
975f03b0f0
Support QuadratureFunction::Integrate with vdim > 1
2024-01-08 11:56:41 -08:00
Will Pazner
ee0118f954
QuadratureFunction::Integrate in parallel
2024-01-08 11:55:44 -08:00
Will Pazner
e37048bfdd
Merge remote-tracking branch 'origin/master' into integrate-qfunction
2024-01-08 11:13:16 -08:00
Will Pazner
8a4c9ca23c
Merge branch 'face-qfunction-coefficient' into integrate-qfunction
...
# Conflicts:
# fem/qspace.hpp
# tests/unit/fem/test_quadf_coef.cpp
2024-01-08 11:12:56 -08:00
Sebastian Grimberg
c6b1d45b25
Fix GridFunction::GetNodalValues when the vector has use_dev = true
2024-01-05 16:00:20 -08:00
Stowell, Mark L
696f0e2f2b
Adding attribute array -> marker array methods to Mesh class
2024-01-05 15:04:25 -08:00
Stowell, Mark L
9844e4d925
Improvements to RemoveFromAttributeSet and RemoveFromBdrAttributeSet
2024-01-05 14:40:03 -08:00
Stowell, Mark L
ae9689cad1
Switching to ranged-for loop in mesh reader
2024-01-05 13:51:07 -08:00
Stowell, Mark L
8ac2f38e41
Switching to range-based for loops
2024-01-04 17:34:43 -08:00
Yohann
957848d6ad
Merge branch 'master' into yohann/fa-dg-amr
2024-01-04 16:30:18 -08:00
Yohann Dudouit
a2667cd239
Add parallel support for full assembly on NCMesh.
2024-01-04 16:18:51 -08:00
Aaron Fisher
46d15e9b7c
make style
2024-01-04 11:57:40 -08:00
Aaron Fisher
25e0fe3a8d
Merge branch 'master' into solvers-dox
2024-01-03 14:12:18 -08:00
Aaron Fisher
3ac5bf85a6
Did an editing pass on the solver documentation I just added.
2024-01-03 14:11:15 -08:00
Joseph Signorelli
18301c0dbc
BNFI for GetGridFunctionEnergy and GetEnergyBlocked
2024-01-03 16:05:55 -06:00
Joseph Signorelli
1f65d89031
Delete bnfi added to destructors
2024-01-03 15:47:17 -06:00
Joseph Signorelli
018da9aee1
Addition of bnfi to MultBlocked + ComputeGradientBlocked
2024-01-03 15:46:09 -06:00
Aaron Fisher
8a1f7aacbf
Improved doxygen for superlu integration.
2024-01-03 13:15:00 -08:00
Joseph Signorelli
5ee2001860
Addition of bnfi to Mult and GetGradient
2024-01-03 15:09:08 -06:00
Joseph Signorelli
3472238513
Addition of bdr integrator vars, and get + add methods
2024-01-03 15:03:48 -06:00
Aaron Fisher
f058ab27cf
Merge branch 'master' into bilinearform-dox
2024-01-02 12:28:50 -08:00
Aaron Fisher
40326625a6
Fixed a dox bug in VectorBoundaryLFIntegrator.
2024-01-02 12:24:45 -08:00
Aaron Fisher
d49bb363e1
Clarified a couple of dox messages.
2024-01-02 12:17:36 -08:00
Aaron Fisher and Dennis Ogiermann
810b05fbe7
Update fem/bilinearform.hpp
...
Co-authored-by: Dennis Ogiermann <termi-official@users.noreply.github.com >
2024-01-02 12:08:56 -08:00
Aaron Fisher and Dennis Ogiermann
d46c264e5b
Update fem/bilinearform.hpp
...
Co-authored-by: Dennis Ogiermann <termi-official@users.noreply.github.com >
2024-01-02 12:08:45 -08:00
Aaron Fisher and Dennis Ogiermann
4499e1ff36
Update fem/bilinearform.hpp
...
Co-authored-by: Dennis Ogiermann <termi-official@users.noreply.github.com >
2024-01-02 12:03:42 -08:00
Yohann Dudouit
8eef6da0c1
Add support for full assembly on non-conforming meshes.
2023-12-29 09:55:43 -08:00
Will Pazner
81d1a2fc1f
Refactor Mesh::GetBdrElementAdjacentElement2
2023-12-28 14:29:41 -08:00
Stowell, Mark L
a5b53962e6
Adding Doxygen style comments
2023-12-22 15:45:19 -08:00
Stowell, Mark L
0b4d6a181d
Fixing shadowed variables flagged by GitHub testing
2023-12-22 11:38:45 -08:00
Stowell, Mark L
e51c4e8bff
Adding example files and test program
2023-12-21 19:16:45 -08:00
Stowell, Mark L
c3e7eb045d
Adding support for named attribute sets
2023-12-21 19:15:45 -08:00
Aaron Fisher
4add47bb17
Improved doxygen for the strumpack integration.
2023-12-21 17:20:56 -08:00
Aaron Fisher
8a4e8ba308
Improved the doxygen for the slepc interface.
2023-12-21 13:53:40 -08:00
Aaron Fisher
dd628ae003
Improvements to Doxygen in Solvers.h
2023-12-20 15:57:34 -08:00
Aaron Fisher
3f994038fa
Add improvements to the MUMPS doxygen.
2023-12-20 12:58:37 -08:00
Aaron Fisher
7bbab61e2b
Significant improvements to the amgx solver doxygen. Fixed a couple doxygen errors in ex37.
2023-12-20 12:08:10 -08:00
Will Pazner
8fdc0c81cb
Fix CHANGELOG
2023-12-19 15:19:47 -08:00
Will Pazner
cd2233936c
Fix bugs in Bramble-Pasciak solver with empty mesh partitions
2023-12-19 13:15:16 -08:00
Gabriel Esteban Pinochet Soto
6f32219308
Add inverse power iteration
2023-12-19 12:43:48 -08:00
Aaron Fisher
fb5ebf0abb
Merge branch 'master' into bilinearform-dox
2023-12-19 11:20:06 -08:00
Gabriel Esteban Pinochet Soto
6b8dd71da7
Remove shared pointed for BilForms.
2023-12-19 10:54:50 -08:00
Gabriel Esteban Pinochet Soto
87d5d1e0b6
Merge branch 'master' of https://github.com/mfem/mfem into block-solvers/bramble-pasciak-dev
2023-12-19 10:18:45 -08:00
dylan-copeland
02276956bd
Merge branch 'master' of github.com:mfem/mfem into nurbs-ref-formula
2023-12-19 09:15:43 -08:00
Victor DeCaria
5f5a0e5fe6
Implement transpose of constrained operator.
2023-12-19 10:02:53 -07:00
Will Pazner
311be95810
Rename GetBdrElementAdjacentElement2 to GetBdrElementAdjacentElementWithInverseOrientation
2023-12-15 09:17:10 -08:00
Aaron Fisher and Dennis Ogiermann
1cda92a06c
Update fem/bilinearform.hpp
...
Co-authored-by: Dennis Ogiermann <termi-official@users.noreply.github.com >
2023-12-12 11:27:38 -08:00
Aaron Fisher and Dennis Ogiermann
0905c430e6
Update fem/bilinearform.hpp
...
Co-authored-by: Dennis Ogiermann <termi-official@users.noreply.github.com >
2023-12-12 11:27:27 -08:00
Aaron Fisher and Dennis Ogiermann
35c8f43d37
Update fem/bilinearform.hpp
...
Co-authored-by: Dennis Ogiermann <termi-official@users.noreply.github.com >
2023-12-12 11:27:13 -08:00
Aaron Fisher and Dennis Ogiermann
6df0133c11
Update fem/bilinearform.hpp
...
Co-authored-by: Dennis Ogiermann <termi-official@users.noreply.github.com >
2023-12-12 11:27:03 -08:00
Aaron Fisher and Dennis Ogiermann
9c69032e49
Update fem/bilinearform.hpp
...
Co-authored-by: Dennis Ogiermann <termi-official@users.noreply.github.com >
2023-12-12 11:26:46 -08:00
Aaron Fisher and Dennis Ogiermann
49cfe29ce9
Update fem/bilinearform.hpp
...
Co-authored-by: Dennis Ogiermann <termi-official@users.noreply.github.com >
2023-12-12 11:26:33 -08:00
Vladimir Z Tomov
9d3125efe6
style
2023-12-06 18:46:14 -08:00
Vladimir Z Tomov
f890c279c2
Fixed the 3d diagonal kernel.
2023-12-06 18:36:40 -08:00
Vladimir Z Tomov
077d9fc6bd
3d unit test (failing)
2023-12-06 18:08:38 -08:00
Vladimir Z Tomov
9d2c0d185f
Fix 2D diagonal kernel + unit test.
2023-12-06 17:39:13 -08:00
Dylan Copeland
f8a8392ff8
Merge branch 'master' of github.com:mfem/mfem into nurbs-ref-formula
2023-12-05 14:34:06 -08:00
Will Pazner and Sebastian Grimberg
61c23059c6
Use '= default' for default Multigrid constructor
...
Co-authored-by: Sebastian Grimberg <sjg@amazon.com >
2023-12-01 11:44:08 -08:00
Will Pazner
68873fa4d4
Update ex26 and ex26p to use constrained prolongation operators
...
Resolves issue #4002
2023-11-30 19:50:51 -08:00
Will Pazner
9c01a3eca7
Use RectangularConstrainedOperator for prolongations in GeometricMultigrid
...
This fixes a bug in the multigrid solver. If the prolongation operators are not
constrained, then their transpose will have nontrivial action on the essential
DOFs, resulting in degraded convergence.
2023-11-30 19:50:51 -08:00
Will Pazner
da68746692
Make FiniteElementSpace::GetEssentialTrueDofs const
2023-11-30 19:47:07 -08:00
Aaron Fisher
4e485b82b2
make style
2023-11-15 16:44:31 -08:00
Aaron Fisher
134d71d66f
Fixed some spacing issues I broke and added doxygen to the remaining methods that didn't have it.
2023-11-15 16:40:30 -08:00
Aaron Fisher
80ac2d549f
Merge branch 'master' into bilinearform-dox
2023-11-09 11:52:32 -08:00
Aaron Fisher
90fcbacb97
Fixed a reference to the DiagonalPolicy enum.
2023-11-09 11:51:15 -08:00
Aaron Fisher
1d711039b0
Improved and expanded the doxygen comments in BilinearForm
2023-11-08 14:42:54 -08:00
Dylan Copeland
023d8b190a
Updated mesh files with spacing formulas to new format.
2023-11-06 11:56:26 -08:00
Dylan Copeland
dee96f98fa
Merge branch 'master' of github.com:mfem/mfem into nurbs-ref-formula
2023-11-06 11:23:27 -08:00
Dylan Copeland
f49051867a
Replaced minus-sign trick with a "spacing" keyword in knotvectors. Added newlines in spacing formula printing.
2023-11-06 11:17:53 -08:00
Dylan Copeland
f0e5bccbfb
Adding parameters for relative numbers of elements in piecewise spacing.
2023-11-06 10:09:52 -08:00
Dylan Copeland
041ce914d8
Making NURBSUniformRefinement public and removing NURBS-specific inputs from UnioformRefinement.
2023-11-01 13:10:35 -07:00
Dylan Copeland
7515dc1c33
Fix memory leak.
2023-10-30 18:20:01 -07:00
Dylan Copeland
b769136be3
Fixing unit test.
2023-10-30 16:10:58 -07:00
Dylan Copeland
2ec09d5851
Fix last commit.
2023-10-25 11:08:11 -07:00
Dylan Copeland
c357367365
Improved documentation.
2023-10-25 10:46:47 -07:00
Will Pazner
74368a0890
Merge remote-tracking branch 'origin/master' into block-solvers/bramble-pasciak-dev
2023-10-23 12:41:19 -07:00
Gabriel Esteban Pinochet Soto
9c7cc2efb7
Modify SumOperator
...
- Correct issues with size of auxiliar vector
- Resize auxiliar vector for Mult and MultTranspose
2023-10-18 10:26:47 -07:00
Gabriel Esteban Pinochet Soto
50666e7ed1
Minor corrections.
...
- Change refinement flags. Modify makefiles.
- Use ParseCheck()
- Some formatting
- Remove using namespace statements
- Replace ResetTimer with Restart
- Remove and clarify some commentaries
- Change initialization of offsets_ in DarcySolver
- Remove default constructors
- Grammar
- Modify SumOperator. Rename and remove one vector.
2023-10-17 20:17:57 -07:00
Gabriel Esteban Pinochet Soto
65e8f66d38
Merge branch 'master' of https://github.com/mfem/mfem into block-solvers/bramble-pasciak-dev
2023-10-17 19:53:31 -07:00
Tzanio Kolev
5472b2468c
Merge branch 'master' into nurbs-ref-formula
2023-10-17 18:17:25 -07:00
Dylan Copeland
ad243930a1
Documentation.
2023-10-16 19:39:46 -07:00
Dylan Copeland
fe5645d0cc
Merge branch 'master' of github.com:mfem/mfem into nurbs-ref-formula
2023-10-16 19:22:44 -07:00
Dylan Copeland
106a47ae5d
Added NURBS tolerance input in mesh-explorer refinement and coarsening. Fixed a bug in KnotVector copy constructor.
2023-10-16 19:22:25 -07:00
Dylan Copeland
4650332a8a
Minor formatting.
2023-10-09 23:23:52 -07:00
Dylan Copeland
23fd868775
Merge branch 'master' of github.com:mfem/mfem into nurbs-ref-formula
2023-10-09 23:12:26 -07:00
Dylan Copeland
42782cb22a
More documentation, and another unit test.
2023-10-09 23:11:29 -07:00
Dylan Copeland
b31988842e
Documentation for spacing functions.
2023-10-09 16:45:51 -07:00
Dylan Copeland
040b496d4d
New unit test for NURBS refinement and coarsening.
2023-10-08 15:35:34 -07:00
Dylan Copeland
693b319c97
Generalized mesh-explorer NURBS refinement to allow for different refinement factors in each dimension.
2023-10-07 20:28:06 -07:00
Dylan Copeland
de4b3a397b
Generalized refinement and coarsening for NURBS meshes with spacing formulas and different numbers of elements in each direction. Added an example of such a mesh.
2023-10-06 23:07:13 -07:00
Dylan Copeland
e89580e82a
Adding NURBS coarsening option in mesh-explorer.
2023-10-06 14:55:19 -07:00
Dylan Copeland
01139e91d2
Enabling multiple NURBS refinements by non-nested spacing formulas, by first coarsening.
2023-10-06 10:52:40 -07:00
Dylan Copeland
dbb15e539c
Implemented knot removal for NURBS meshes.
2023-10-05 12:57:15 -07:00
Dylan Copeland
47ac017e36
Merge branch 'master' of github.com:mfem/mfem into nurbs-ref-formula
2023-09-28 13:32:42 -07:00
Dylan Copeland
65a26340e8
Added option for NURBS refinement by a factor. Implemented piecewise spacing functions with an example mesh file.
2023-09-28 13:31:38 -07:00
Will Pazner
8711685494
Add QuadratureFunction::Integrate unit tests
2023-09-20 11:49:07 -07:00
Will Pazner
dda1002ff1
Add QuadratureFunction::Integrate
2023-09-20 11:48:58 -07:00
Will Pazner
082dbe45d4
Add QuadratureSpaceBase::GetWeights
2023-09-20 11:48:53 -07:00
Dylan Copeland
f6b19999b3
Fixing a bug by deep-copying knotvector spacing by a new clone function.
2023-09-15 15:45:27 -07:00
Gabriel Esteban Pinochet Soto
1364914e7d
Small fix. Use MFEM_LAPACK macro.
2023-09-13 12:22:42 -07:00
Gabriel Esteban Pinochet Soto
84a248e42c
Add return nullptr
2023-09-13 11:55:33 -07:00
Gabriel Esteban Pinochet Soto
9d2c4c899c
Use MFEM_USE_LAPACK macro.
2023-09-13 10:30:04 -07:00
Gabriel Esteban Pinochet Soto
08b87fd9fe
Disable iterative mode in SumOperator
2023-09-12 14:15:12 -07:00
Gabriel Esteban Pinochet Soto
41131c3e0c
Remove unused varaible in BramblePasciakSolver
2023-09-12 13:42:36 -07:00
Gabriel Esteban Pinochet Soto
bfcb60ccec
Override SetPreconditioner.
2023-09-12 12:59:44 -07:00
Gabriel Esteban Pinochet Soto
26a6c3c735
Update tests options in makefiles.
2023-09-12 12:05:08 -07:00
Gabriel Esteban Pinochet Soto
0ec2ea20de
Make style.
2023-09-12 10:52:09 -07:00
Gabriel Esteban Pinochet Soto
1a4d4d4a61
Merge branch 'master' of github.com:mfem/mfem into block-solvers/bramble-pasciak-dev
2023-09-12 10:42:56 -07:00
Gabriel Esteban Pinochet Soto
ffb58713b1
Small change to SumOperator constructor.
...
- To decide if we can add two iterative solvers.
2023-09-12 10:32:13 -07:00
Gabriel Esteban Pinochet Soto
c90d52d32b
Modify makefile. Minor fixes.
...
- Move assert into ConstructMassPreconditioner
- Update makefile
2023-09-11 17:58:16 -07:00
Gabriel Esteban Pinochet Soto
05ace32f42
Cleaner code.
...
- Add description to README
- Remove commentaries in BPCG
- Move assert into ConstructMassPreconditioner
2023-09-11 11:21:27 -07:00
Chak Shing Lee
fcc35e6c6f
remove one target in makefile
2023-09-06 14:54:28 -07:00
Chak Shing Lee
e60b446438
remove unused lines
2023-09-06 14:18:30 -07:00
Chak Shing Lee
78d869d6fe
Merge branch 'csl/bilinearform-vdofs-fix' of https://github.com/mfem/mfem into block-solvers/bramble-pasciak-dev
2023-09-06 11:13:01 -07:00
Chak Shing Lee
2d8d46a208
use M instead of Q to construct the (1,1)-block preconditioner in BramblePasciakSolver. adjust documentation and print
2023-09-05 11:22:24 -07:00
Chak Shing Lee
40abb09c99
resolve conflicts with master
2023-09-01 16:58:24 -07:00
Gabriel Esteban Pinochet Soto
bf9bdddfdc
Restructure of the code.
...
- Remove overloaded BramblePasciakSolver::Init function
- Move MFEM pre-defined BPSolver setting to the constructor
- Add pointers to solvers in BramblePasciakSolver class
- Simplify options
- Remove redundant option in Parameter structs
- Rename AddOperator to SumOperator
- Wrap *.cpp files into namespace scopes
- Add some documentation
- Make style
2023-09-01 14:15:47 -07:00
Gabriel Esteban Pinochet Soto
2b88ef81ae
Add serial and parallel refinement flag.
2023-08-28 16:50:53 -07:00
Gabriel Esteban Pinochet Soto
5fc779e128
Reorganize functions
...
- Move general-purpose functions to block-solvers.cpp
- Reorganize code
- TODO Serial and parallel refinement flags
2023-08-28 14:01:19 -07:00
Gabriel Esteban Pinochet Soto
2ca61c74b0
Remove warnings.
...
- Remove warnings concerning unset/unused operators.
2023-08-22 17:29:46 -07:00
Gabriel Esteban Pinochet Soto
98e2af65da
Modify documentation.
...
- Remove characters.
2023-08-21 10:34:54 -07:00
Gabriel Esteban Pinochet Soto
46a8bca7f5
Add documentation
2023-08-21 10:30:56 -07:00
Gabriel Esteban Pinochet Soto
cb95ddc422
Remove draft elasticity. Add documentation.
...
- Remove draft. Comment CMake files.
- Add some explanation regarding BPCG and BP transform.
- Make style.
2023-08-21 10:12:52 -07:00
Gabriel Esteban Pinochet Soto
aae0f2b7f2
Compartmentalization of block-solvers.
...
- Add bramble_pasciack.xpp, darcy_solver.xpp
- Move solvers to their respective files and headders
- Update makefile and CMakeList.txt
- (WIP) Add draft elasticity solver (similar to darcy_solver)
- (WIP) Add specific classes to handle the elasticity FES
- (WIP) Define basic block structure
2023-08-17 17:55:16 -07:00
Gabriel Esteban Pinochet Soto
31b17b2913
Condense Init functions.
...
- Define operator pointers when required.
- Use OperatorPtr for solver_ in BPSClass.
- Add MFEM Warnings.
- Add H preconditioner.
2023-08-14 14:44:26 -07:00
Gabriel Esteban Pinochet Soto
6f3cf11d58
Indentation fix (make style).
2023-08-10 16:25:23 -07:00
Gabriel Esteban Pinochet Soto
0631cea458
Update BramblePasciakSolver::GetNumIterations.
2023-08-10 16:15:35 -07:00
Gabriel Esteban Pinochet Soto
79f2d77612
Add BPCGSolver. Modify BramblePasciakSolver class.
...
- Add class BPCGSolver as a derived class of CGSolver.
- Add bool use_bpcg in BramblePasciakSolver.
- Storage main matrices in BramblePasciakSolver.
- Remaining operators stored as pointers.
- Update linalg/operator.hpp (make style).
- TODO Fix bug final_iter.
2023-08-10 15:51:36 -07:00
Gabriel Esteban Pinochet Soto
08deeaacd9
Add AddOperator operator.
2023-08-07 10:35:26 -07:00
Gabriel Esteban Pinochet Soto
b4a0df6f5c
Add parameter control. Add some documentation.
...
- Add parameter control for the default preconditioner.
- Add brief explanation of the current class.
- Include some relevant citations.
2023-08-07 10:29:28 -07:00
Chak Shing Lee
17271c5d27
fix doc
2023-08-02 18:57:15 -07:00
Chak Shing Lee
da5222a860
some minor adjustment, and renaming of variables to match with other DarcySolver
2023-08-02 18:42:47 -07:00
Gabriel Esteban Pinochet Soto
b765c24d1c
Check style with make style
2023-07-31 15:17:47 -07:00
Gabriel Esteban Pinochet Soto
3056cddd22
Add Bramble-Pasciak solver.
...
- Modify DarcyProblem class.
- Add Bramble-Pasciak class.
- Define Bramble-Pasciak constructors.
- Define Bramble-Pasciak Mult.
- Update header accordingly.
2023-07-31 15:17:47 -07:00
Dylan Copeland
39c7d02ddb
Merge branch 'master' of github.com:mfem/mfem into nurbs-ref-formula
2023-06-16 15:40:10 -07:00
Dylan Copeland
1e35df5351
Copying spacing data when degree is elevated.
2023-06-15 15:56:13 -07:00
Dylan Copeland
48496dbfa4
Adding option to scale spacing parameters on refinement.
2023-05-11 15:36:44 -07:00
Dylan Copeland
759f82ed44
Adding destructor.
2023-05-04 18:50:09 -07:00
Dylan Copeland
d65eb0bd7d
Implemented NURBS refinement by formulas, along with some relative spacing formulas. Added a new version of data/pipe-nurbs.mesh with logarithmic spacing.
2023-05-04 18:19:37 -07:00
Will Pazner
d2775b3d53
Merge remote-tracking branch 'origin/master' into face-qfunction-coefficient
2023-04-12 20:08:40 -07:00