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27b84d79b8 |
@@ -25,7 +25,7 @@ runs:
|
||||
steps:
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
|
||||
- uses: actions/cache@v4
|
||||
- uses: actions/cache@v5
|
||||
if: ${{env.DEBUG == 'true'}}
|
||||
id: debug
|
||||
with:
|
||||
@@ -53,7 +53,7 @@ runs:
|
||||
run: echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.UBSAN_CXXFLAGS}} >> $GITHUB_ENV
|
||||
shell: bash
|
||||
|
||||
- uses: mfem/github-actions/build-mfem@v2.5
|
||||
- uses: mfem/github-actions/build-mfem@v2.6
|
||||
if: ${{steps.debug.outputs.cache-hit != 'true'}}
|
||||
env:
|
||||
CXXFLAGS: ${{env.CXXFLAGS}}
|
||||
@@ -82,7 +82,7 @@ runs:
|
||||
run: find . -type f -name '*.o' -delete
|
||||
shell: bash
|
||||
|
||||
- uses: actions/upload-artifact@v4
|
||||
- uses: actions/upload-artifact@v7
|
||||
with:
|
||||
name: build-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
path: mfem/build
|
||||
|
||||
@@ -36,7 +36,7 @@ runs:
|
||||
steps:
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
|
||||
- uses: actions/cache@v4
|
||||
- uses: actions/cache@v5
|
||||
if: ${{env.DEBUG == 'true' && inputs.cache-skip != 'true'}}
|
||||
id: debug
|
||||
with:
|
||||
@@ -49,7 +49,7 @@ runs:
|
||||
par: ${{inputs.par}}
|
||||
sanitizer: ${{inputs.sanitizer}}
|
||||
|
||||
- uses: actions/download-artifact@v4
|
||||
- uses: actions/download-artifact@v8
|
||||
with:
|
||||
name: build-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
path: mfem/build
|
||||
|
||||
@@ -23,7 +23,7 @@ inputs:
|
||||
runs:
|
||||
using: 'composite'
|
||||
steps:
|
||||
- uses: actions/cache/restore@v4 # Cache for LLVM libcxx
|
||||
- uses: actions/cache/restore@v5 # Cache for LLVM libcxx
|
||||
with:
|
||||
path: ${{env.LLVM_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
@@ -32,14 +32,14 @@ runs:
|
||||
- uses: ./.github/actions/sanitize/mpi
|
||||
if: ${{inputs.par == 'true'}}
|
||||
|
||||
- uses: actions/cache/restore@v4 # Cache for Hypre
|
||||
- uses: actions/cache/restore@v5 # Cache for Hypre
|
||||
if: ${{inputs.par == 'true'}}
|
||||
with:
|
||||
path: ${{env.HYPRE_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
|
||||
|
||||
- uses: actions/cache/restore@v4 # Cache for Metis
|
||||
- uses: actions/cache/restore@v5 # Cache for Metis
|
||||
if: ${{inputs.par == 'true'}}
|
||||
with:
|
||||
path: ${{env.METIS_DIR}}
|
||||
@@ -51,13 +51,13 @@ runs:
|
||||
run: ln -s -f ${{env.HYPRE_DIR}} hypre && ln -s -f ${{env.METIS_DIR}} metis-4.0
|
||||
shell: bash
|
||||
|
||||
- uses: actions/cache/restore@v4 # Cache for LSAN suppression file
|
||||
- uses: actions/cache/restore@v5 # Cache for LSAN suppression file
|
||||
with:
|
||||
path: ${{env.LSAN_DIR}}
|
||||
fail-on-cache-miss: true
|
||||
key: build-lsan-suppression-file
|
||||
|
||||
- uses: actions/checkout@v4 # Checkout the repository
|
||||
- uses: actions/checkout@v6 # Checkout the repository
|
||||
with:
|
||||
path: mfem
|
||||
# ref: ${{env.BRANCH}}
|
||||
|
||||
@@ -0,0 +1,42 @@
|
||||
# MFEM Pull Request Review Agent Guide
|
||||
|
||||
## Purpose and scope
|
||||
Review MFEM PRs for correctness, maintainability, performance, portability, test coverage, and MFEM consistency. Use the diff and PR context; reference source files, tests, and CI results when available. Follow `CONTRIBUTING.md`, especially Developer Guidelines, PR rules, checklist, and testing.
|
||||
|
||||
## Critical review pillars
|
||||
- Correctness and numerical behavior
|
||||
- API and user-facing impact
|
||||
- Performance implications
|
||||
- Maintainability and portability
|
||||
|
||||
## Review workflow
|
||||
1. Read the PR description, linked issues, and intended behavior.
|
||||
2. Inspect the diff before commenting.
|
||||
3. Identify affected MFEM components, examples, tests, build or docs changes, and downstream APIs.
|
||||
4. Analyze the code against the critical review pillars.
|
||||
5. Compare the change against nearby code and MFEM patterns; flag unmotivated deviations.
|
||||
6. Check whether tests and documentation were updated appropriately.
|
||||
7. Review CI results and suggest actions.
|
||||
8. Produce a structured review with prioritized findings.
|
||||
9. Always limit conclusions to available evidence.
|
||||
|
||||
## MFEM-specific review checklist
|
||||
- Component-aware scope: identify the touched subsystem (FEM, solvers, preconditioners, linear algebra, mesh, examples, miniapps, build, or docs) and assess its impact against the review pillars.
|
||||
- Numerical and algorithmic behavior: assess issues in convergence, stability, tolerances, precision, iteration limits, and failure handling. If clear opportunities exist to improve the algorithmic approach, call them out with expected impact.
|
||||
- API and user-facing impact: assess backward compatibility, user-visible behavior and default changes, migration impact, deprecations, and whether documentation clearly explains user-facing API changes.
|
||||
- Data structure and memory semantics: assess ownership, lifetime, aliasing, container behavior, and device-host synchronization.
|
||||
- Parallel and serial behavior: assess whether the change preserves equivalent semantics in serial and parallel modes where applicable; if logic is currently mode-specific, check whether extension to the other mode is straightforward (clear abstractions, no hard-wired assumptions), document constraints, and call out expected behavior differences explicitly.
|
||||
- Backend and portability impact: assess likely cross-backend risks in CPU, CUDA, HIP, OCCA, RAJA, partial assembly, fallback paths, compiler compatibility, and platform assumptions.
|
||||
- Build, dependency, and configuration impact: assess CMake or make changes, optional dependency behavior, and feature-flag interactions.
|
||||
- Tests and docs alignment: check available regression or unit coverage evidence for changed behavior, and ensure docs are updated for new flags, APIs, options, or behavior changes.
|
||||
- MFEM developer-guideline fit: keep code lean, simple, general, logically separated, and portable; suggest C++17 improvements when they clearly improve safety, clarity, or maintainability.
|
||||
- New source files, examples, or miniapps: if a PR adds source/header files, verify they are properly wired into the relevant `makefile` and `CMakeLists.txt`, referenced in docs where applicable (including `doc/CodeDocumentation.dox`), and added to top-level `.gitignore` only when generated artifacts require it.
|
||||
- Changelog: verify `CHANGELOG` is updated if the PR introduces significant new features or user-facing changes.
|
||||
- MFEM conventions: use `real_t`; use `mfem::out`/`mfem::err` instead of `std::cout`/`std::cerr` in library code; flag large/binary files; if AI assistance is apparent but undisclosed, suggest following `CONTRIBUTING.md`.
|
||||
- Edge cases: if the PR touches complex or error-prone areas, suggest additional tests for edge cases, failure modes, and parallel behavior.
|
||||
|
||||
## Commenting guidelines
|
||||
- Keep comments concise, actionable, and grounded in the diff.
|
||||
- Focus on correctness, behavior changes, and user impact over style nits.
|
||||
- Be professional, concise, collaborative, technically precise, and avoid unsupported assumptions.
|
||||
|
||||
@@ -13,7 +13,7 @@ Note that some of these scripts use the shared MFEM GitHub Actions from the exte
|
||||
|
||||
<https://github.com/mfem/github-actions>
|
||||
|
||||
For a particular action, e.g. `mfem/github-actions/build-mfem@v2.5`, the `v2.5` suffix denotes the branch in the above from which the action is taken.
|
||||
For a particular action, e.g. `mfem/github-actions/build-mfem@v2.5`, the `v2.5` suffix denotes the branch (or tag) in the above from which the action is taken.
|
||||
|
||||
The current CI workflows are:
|
||||
|
||||
|
||||
@@ -43,7 +43,7 @@ jobs:
|
||||
remove-docker-images: 'true'
|
||||
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
# It's easier to reference named variables than indexes of the matrix
|
||||
- name: Set Environment
|
||||
|
||||
@@ -153,7 +153,7 @@ jobs:
|
||||
# /home/runner/work/mfem/mfem/mfem
|
||||
# Note: Done now to access "install-hypre" and "install-metis" actions.
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
with:
|
||||
path: ${{ env.MFEM_TOP_DIR }}
|
||||
# Fetch the complete history for codecov to access commits ID
|
||||
@@ -225,14 +225,14 @@ jobs:
|
||||
- name: cache hypre
|
||||
id: hypre-cache
|
||||
if: matrix.mpi == 'par'
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-v2.5
|
||||
|
||||
- name: get hypre
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
uses: mfem/github-actions/build-hypre@v2.6
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -242,7 +242,7 @@ jobs:
|
||||
|
||||
- name: get hypre (Windows)
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
uses: mfem/github-actions/build-hypre@v2.6
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -255,14 +255,14 @@ jobs:
|
||||
- name: cache metis
|
||||
id: metis-cache
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
|
||||
|
||||
- name: install metis
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.5
|
||||
uses: mfem/github-actions/build-metis@v2.6
|
||||
with:
|
||||
archive: ${{ matrix.os != 'macos-latest' && env.METIS_ARCHIVE || env.METIS_ARCHIVE_MAC }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
@@ -270,7 +270,7 @@ jobs:
|
||||
- name: cache vcpkg (Windows)
|
||||
id: vcpkg-cache
|
||||
if: matrix.os == 'windows-latest'
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: vcpkg_cache
|
||||
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
|
||||
@@ -295,7 +295,8 @@ jobs:
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew update
|
||||
brew install enzyme
|
||||
ENZYME_LLVM=$(brew info enzyme | sed -n 's/^Required:.*\(llvm[^ ]*\).*/\1/p')
|
||||
ENZYME_LLVM=$(brew info enzyme | sed -n 's/^Required.*:.*\(llvm[^ ]*\).*/\1/p')
|
||||
echo "ENZYME_LLVM=$ENZYME_LLVM"
|
||||
LLVM_PREFIX=$(brew --prefix $ENZYME_LLVM)
|
||||
echo "LLVM_PREFIX=$LLVM_PREFIX" >> $GITHUB_ENV
|
||||
echo "OMPI_CC=$LLVM_PREFIX/bin/clang" >> $GITHUB_ENV
|
||||
@@ -303,7 +304,7 @@ jobs:
|
||||
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
uses: mfem/github-actions/build-mfem@v2.5
|
||||
uses: mfem/github-actions/build-mfem@v2.6
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
with:
|
||||
@@ -374,8 +375,10 @@ jobs:
|
||||
# Code coverage (process and upload reports)
|
||||
- name: codecov
|
||||
if: matrix.codecov == 'YES'
|
||||
uses: mfem/github-actions/upload-coverage@v2.5
|
||||
uses: mfem/github-actions/upload-coverage@v2.6
|
||||
with:
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}
|
||||
project_dir: ${{ env.MFEM_TOP_DIR }}
|
||||
directories: "fem general linalg mesh"
|
||||
env:
|
||||
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
|
||||
|
||||
@@ -40,11 +40,11 @@ jobs:
|
||||
|
||||
steps:
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
# Initializes the CodeQL tools for scanning.
|
||||
- name: Initialize CodeQL
|
||||
uses: github/codeql-action/init@v2
|
||||
uses: github/codeql-action/init@v4
|
||||
with:
|
||||
languages: ${{ matrix.language }}
|
||||
# If you wish to specify custom queries, you can do so here or in a config file.
|
||||
@@ -57,7 +57,7 @@ jobs:
|
||||
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
|
||||
# If this step fails, then you should remove it and run the build manually (see below)
|
||||
- name: Autobuild
|
||||
uses: github/codeql-action/autobuild@v2
|
||||
uses: github/codeql-action/autobuild@v4
|
||||
|
||||
# ℹ️ Command-line programs to run using the OS shell.
|
||||
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
|
||||
@@ -70,4 +70,4 @@ jobs:
|
||||
# ./location_of_script_within_repo/buildscript.sh
|
||||
|
||||
- name: Perform CodeQL Analysis
|
||||
uses: github/codeql-action/analyze@v2
|
||||
uses: github/codeql-action/analyze@v4
|
||||
|
||||
@@ -39,7 +39,7 @@ jobs:
|
||||
|
||||
steps:
|
||||
- name: checkout MFEM
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
@@ -50,14 +50,14 @@ jobs:
|
||||
|
||||
- name: Cache Hypre Install
|
||||
id: hypre-cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-v2.5
|
||||
|
||||
- name: Get Hypre
|
||||
if: steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
uses: mfem/github-actions/build-hypre@v2.6
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -65,21 +65,21 @@ jobs:
|
||||
|
||||
- name: Cache Metis Install
|
||||
id: metis-cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
|
||||
|
||||
- name: Install Metis
|
||||
if: steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.5
|
||||
uses: mfem/github-actions/build-metis@v2.6
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build-mfem
|
||||
uses: mfem/github-actions/build-mfem@v2.5
|
||||
uses: mfem/github-actions/build-mfem@v2.6
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
|
||||
@@ -38,7 +38,7 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
- name: copyright check
|
||||
id: copyright
|
||||
@@ -93,7 +93,7 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
- name: get astyle
|
||||
run: |
|
||||
@@ -110,7 +110,7 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
|
||||
- name: get doxygen and graphviz
|
||||
run: |
|
||||
@@ -135,7 +135,7 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v4
|
||||
uses: actions/checkout@v6
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
|
||||
@@ -17,11 +17,11 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
name: 2.19.0
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{env.HYPRE_DIR}}
|
||||
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
|
||||
@@ -30,7 +30,7 @@ jobs:
|
||||
uses: ./.github/actions/sanitize/mpi
|
||||
- name: Build
|
||||
if: steps.cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.5
|
||||
uses: mfem/github-actions/build-hypre@v2.6
|
||||
with:
|
||||
archive: ${{env.HYPRE_TGZ}}
|
||||
dir: ${{env.HYPRE_DIR}}
|
||||
|
||||
@@ -27,13 +27,13 @@ jobs:
|
||||
llvm_use_sanitizer: "Undefined"
|
||||
name: ${{matrix.sanitizer}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
with:
|
||||
NO_FLAGS: true
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{env.LLVM_DIR}}
|
||||
key: build-libcxx-${{env.LLVM_VER}}-${{matrix.sanitizer}}
|
||||
|
||||
@@ -17,11 +17,11 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
name: lsan.supp
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{env.LSAN_DIR}}
|
||||
key: build-lsan-suppression-file
|
||||
|
||||
@@ -17,11 +17,11 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
name: 4.0.3
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/config
|
||||
- name: Cache
|
||||
id: cache
|
||||
uses: actions/cache@v4
|
||||
uses: actions/cache@v5
|
||||
with:
|
||||
path: ${{env.METIS_DIR}}
|
||||
key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
|
||||
@@ -30,7 +30,7 @@ jobs:
|
||||
uses: ./.github/actions/sanitize/mpi
|
||||
- name: Build
|
||||
if: steps.cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.5
|
||||
uses: mfem/github-actions/build-metis@v2.6
|
||||
with:
|
||||
archive: ${{env.METIS_TGZ}}
|
||||
dir: ${{env.METIS_DIR}}
|
||||
|
||||
@@ -28,7 +28,7 @@ jobs:
|
||||
build:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/mfem
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
@@ -40,7 +40,7 @@ jobs:
|
||||
env:
|
||||
ex: ${{inputs.par && 'ex1p' || 'ex1'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -58,7 +58,7 @@ jobs:
|
||||
env:
|
||||
exclude: ${{inputs.par && '-E "_ser"' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -82,7 +82,7 @@ jobs:
|
||||
env:
|
||||
exclude: ${{inputs.par && '-E "_ser"' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -107,7 +107,7 @@ jobs:
|
||||
run: ${{inputs.par && '-R "_cpu_np"' || ''}}
|
||||
exclude: ${{inputs.par && '"unit_tests|debug"' || '"^unit_tests$|debug"'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -131,7 +131,7 @@ jobs:
|
||||
env:
|
||||
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
@@ -146,7 +146,7 @@ jobs:
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
working-directory: mfem/build/tests/unit
|
||||
run: find . -type f -name '*.o' -delete
|
||||
- uses: actions/upload-artifact@v4
|
||||
- uses: actions/upload-artifact@v7
|
||||
with:
|
||||
name: tests-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
path: mfem/build/tests/unit/${{env.unit_tests}}
|
||||
@@ -165,14 +165,14 @@ jobs:
|
||||
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
|
||||
np: ${{inputs.par && '_np=2' || ''}}
|
||||
steps:
|
||||
- uses: actions/checkout@v4
|
||||
- uses: actions/checkout@v6
|
||||
- uses: ./.github/actions/sanitize/restore
|
||||
id: restore
|
||||
with:
|
||||
par: ${{inputs.par}}
|
||||
sanitizer: ${{inputs.sanitizer}}
|
||||
cache-path: mfem/build/tests/unit/${{env.unit_tests}}
|
||||
- uses: actions/download-artifact@v4
|
||||
- uses: actions/download-artifact@v8
|
||||
if: ${{steps.restore.outputs.cache-hit != 'true'}}
|
||||
with:
|
||||
name: tests-${{inputs.par}}-${{inputs.sanitizer}}
|
||||
|
||||
@@ -443,6 +443,10 @@ miniapps/diag-smoothers/mg-abs-l1-jacobi
|
||||
miniapps/contact/contact
|
||||
miniapps/contact/ParaView
|
||||
|
||||
miniapps/plasma/pic/electrostatic-*
|
||||
!miniapps/plasma/pic/electrostatic-*.cpp
|
||||
miniapps/plasma/pic/*.csv
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
|
||||
@@ -85,3 +85,8 @@ opt_par_gcc_10_pumi:
|
||||
extends: .mfem_job_on_dane
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +pumi"
|
||||
|
||||
opt_par_gcc_10_gslib:
|
||||
extends: .mfem_job_on_dane
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +gslib"
|
||||
|
||||
@@ -63,3 +63,8 @@ opt_mpi_cuda_hypre_cuda_gcc:
|
||||
extends: .mfem_job_on_matrix
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +mpi +cuda cuda_arch=90 ^hypre+cuda"
|
||||
|
||||
opt_mpi_cuda_gcc_gslib:
|
||||
extends: .mfem_job_on_matrix
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +mpi +cuda +gslib cuda_arch=90 ^hypre+cuda"
|
||||
|
||||
@@ -32,9 +32,9 @@ mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
|
||||
|
||||
# run
|
||||
if [[ "${MACHINE_NAME}" == "dane" ]]; then
|
||||
salloc --nodes=1 -t 60 --exclusive --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
srun --nodes=1 -t 60 --exclusive --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
elif [[ ${MACHINE_NAME} == "corona" ]]; then
|
||||
salloc --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
srun --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
|
||||
else
|
||||
echo "Unknown machine: MACHINE_NAME=$MACHINE_NAME"
|
||||
exit 1
|
||||
|
||||
@@ -11,8 +11,26 @@
|
||||
Version 4.9.1 (development)
|
||||
===========================
|
||||
|
||||
- Policy for AI-assisted contribution added to CONTRIBUTING.md
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Added NVIDIA cuDSS library interface. Implementation examples have been
|
||||
added to ex1 and ex1p. See https://developer.nvidia.com/cudss for more
|
||||
details. Supported versions >= 0.6.0.
|
||||
|
||||
- Extend FindPointsGSLIB to support surface meshes.
|
||||
|
||||
- Replaced legacy simplex quadrature rules with symmetric positive-weight
|
||||
rules for triangles (orders 0-25) and tetrahedra (orders 0-20). These
|
||||
rules guarantee all-positive weights and interior quadrature points,
|
||||
improving numerical stability. Higher orders fall back to Grundmann-Moller.
|
||||
Triangle rules: Witherden & Vincent, Comput. Math. Appl. 69(10):1232-1241,
|
||||
2015.
|
||||
Tet rules (d=1-13): Witherden & Vincent (ibid).
|
||||
Tet rules (d=14-20): Chuluunbaatar et al., Comput. Math. Appl. 124:89-97,
|
||||
2022.
|
||||
|
||||
- Improved the gridfunction projection routines. Projections work for Scalar,
|
||||
Vector and VectorFE, also NURBS versions. Optionally different types of
|
||||
projections can be selected, default behaviour has not changed.
|
||||
@@ -25,11 +43,28 @@ Meshing improvements
|
||||
- Improved support for 1D NURBS meshes with variable order, including using
|
||||
the patches construct for 1D NURBS meshes.
|
||||
|
||||
- Added the option to include material interfaces (faces separating elements
|
||||
with different element attributes) as additional boundary elements, for
|
||||
parallel visualization, e.g. with GLVis. This is supported by both the Print
|
||||
and PrintAsOne methods of ParMesh. See ParMesh::SetPrintInterfaces().
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Electromagnetics/lorentz miniapp has been updated to leverage the ParticleSet
|
||||
capability.
|
||||
|
||||
GPU computing
|
||||
-------------
|
||||
- Allow specifying GPU kernel launch bounds for native and RAJA GPU backends.
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- Fixed signed DOF handling in parallel grid-function reading (read constructor)
|
||||
and saving via ParGridFunction::SaveAsOne(). Simplified the process of
|
||||
applying the DOF signs by using the new method ApplyDofSigns() in class
|
||||
ParFiniteElementSpace -- the method will return immediately if no sign flips
|
||||
are needed.
|
||||
|
||||
|
||||
Version 4.9, released on Dec 11, 2025
|
||||
=====================================
|
||||
|
||||
+10
-1
@@ -433,6 +433,15 @@ if (MFEM_USE_STRUMPACK)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# cuDSS can only be enabled in CUDA
|
||||
if (MFEM_USE_CUDSS)
|
||||
if (MFEM_USE_CUDA)
|
||||
find_package(CUDSS REQUIRED)
|
||||
else()
|
||||
message(FATAL_ERROR " *** cuDSS requires that CUDA be enabled.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# GnuTLS
|
||||
if (MFEM_USE_GNUTLS)
|
||||
find_package(_GnuTLS REQUIRED)
|
||||
@@ -631,7 +640,7 @@ find_package(Threads REQUIRED)
|
||||
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
|
||||
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB HDF5
|
||||
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
|
||||
ADIOS2 MKL_CPARDISO MKL_PARDISO AMGX MAGMA CUSPARSE CUBLAS CALIPER CODIPACK
|
||||
ADIOS2 MKL_CPARDISO MKL_PARDISO AMGX MAGMA CUSPARSE CUBLAS CUDSS CALIPER CODIPACK
|
||||
BENCHMARK PARELAG TRIBOL MPI_CXX HIP HIPBLAS HIPSPARSE MOONOLITH BLITZ
|
||||
ALGOIM ENZYME CUDA::cudart)
|
||||
|
||||
|
||||
+73
-65
@@ -3,12 +3,13 @@
|
||||
</p>
|
||||
|
||||
<p align="center">
|
||||
<a href="https://github.com/mfem/mfem/blob/master/LICENSE"><img alt="License" src="https://img.shields.io/badge/License-BSD-brightgreen.svg"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Arepo-check+branch%3Amaster"><img alt="Repo check" src="https://github.com/mfem/mfem/actions/workflows/repo-check.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuild-analysis+branch%3Amaster"><img alt="Build Analysis" src="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuilds-and-tests+branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/blob/master/LICENSE"><img alt="License" src="https://img.shields.io/badge/License-BSD-blue.svg"></a>
|
||||
<a href="https://github.com/mfem/mfem/releases/latest"><img alt="GitHub release" src="https://img.shields.io/github/v/release/mfem/mfem"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions/workflows/repo-check.yml?query=branch%3Amaster"><img alt="Repo check" src="https://github.com/mfem/mfem/actions/workflows/repo-check.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml?query=branch%3Amaster"><img alt="Build Analysis" src="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml?query=branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
|
||||
<a href="https://ci.appveyor.com/project/mfem/mfem"><img alt="Build Status" src="https://ci.appveyor.com/api/projects/status/19non9sqm6msi2wy?svg=true"></a>
|
||||
<a href="https://docs.mfem.org/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
|
||||
<a href="https://docs.mfem.org/html/index.html"><img alt="Documentation" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
|
||||
</p>
|
||||
|
||||
|
||||
@@ -24,6 +25,14 @@ must be made under this license.
|
||||
Note also that MFEM has a [Code of Conduct](CODE_OF_CONDUCT.md). By participating
|
||||
in the MFEM community, you agree to abide by its rules.
|
||||
|
||||
## AI Policy
|
||||
- Use of AI code generation in MFEM is allowed but must be disclosed, e.g. by
|
||||
selecting the `AI-assisted` label on the PR.
|
||||
- By submitting a PR, the author acknowledges that they have reviewed and
|
||||
understand the changes they are proposing.
|
||||
- PR authors are still responsible for correctness, licensing, and attribution
|
||||
of all changes.
|
||||
|
||||
If you plan on contributing to MFEM, consider reviewing the
|
||||
[issue tracker](https://github.com/mfem/mfem/issues) first to check if a thread
|
||||
already exists for your desired feature or the bug you ran into. Use a pull
|
||||
@@ -76,7 +85,7 @@ Origin](#developers-certificate-of-origin-11) at the end of this file.*
|
||||
follow the [MFEM PR Rules](#mfem-pr-rules).
|
||||
- When your contribution is fully working and ready to be reviewed, add
|
||||
the `ready-for-review` label.
|
||||
- PRs are treated similarly to journal submission with an "editor" assigning two
|
||||
- PRs are treated similarly to journal submission, with an "editor" assigning two
|
||||
reviewers to evaluate the changes.
|
||||
- The reviewers have 3 weeks to evaluate the PR and work with the author to
|
||||
fix issues and implement improvements.
|
||||
@@ -117,7 +126,7 @@ The MFEM source code has the following structure:
|
||||
│ ├── petsc
|
||||
│ ├── pumi
|
||||
│ ├── sundials
|
||||
| └── superlu
|
||||
│ └── superlu
|
||||
├── fem
|
||||
│ ├── ceed
|
||||
│ ├── dfem
|
||||
@@ -129,10 +138,6 @@ The MFEM source code has the following structure:
|
||||
│ ├── moonolith
|
||||
│ ├── qinterp
|
||||
│ └── tmop
|
||||
│ | ├── assemble
|
||||
│ | ├── metrics
|
||||
│ | ├── mult
|
||||
│ | └── tools
|
||||
├── general
|
||||
├── linalg
|
||||
│ ├── batched
|
||||
@@ -145,11 +150,10 @@ The MFEM source code has the following structure:
|
||||
│ ├── common
|
||||
│ ├── contact
|
||||
│ ├── dfem
|
||||
│ ├── diag-smoothers
|
||||
│ ├── dpg
|
||||
│ ├── electromagnetics
|
||||
│ ├── fluids
|
||||
│ │ ├── navier
|
||||
│ │ └── schrodinger-flow
|
||||
│ ├── gslib
|
||||
│ ├── hdiv-linear-solver
|
||||
│ ├── hooke
|
||||
@@ -159,6 +163,7 @@ The MFEM source code has the following structure:
|
||||
│ ├── nurbs
|
||||
│ ├── parelag
|
||||
│ ├── performance
|
||||
│ ├── plasma
|
||||
│ ├── shifted
|
||||
│ ├── solvers
|
||||
│ ├── spde
|
||||
@@ -189,15 +194,15 @@ respectively.
|
||||
|
||||
- The main finite element classes are:
|
||||
+ [`FiniteElement`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementCollection`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
|
||||
+ [`FiniteElementCollection`](https://docs.mfem.org/html/classmfem_1_1FiniteElementCollection.html)
|
||||
+ [`FiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1FiniteElementSpace.html)
|
||||
+ [`GridFunction`](https://docs.mfem.org/html/classmfem_1_1GridFunction.html)
|
||||
+ [`BilinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html)
|
||||
+ [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://docs.mfem.org/html/classmfem_1_1MixedBilinearForm.html)
|
||||
+ [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html), [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://docs.mfem.org/html/classmfem_1_1MixedBilinearForm.html)
|
||||
|
||||
- The main linear algebra classes and sources are
|
||||
+ [`Operator`](https://docs.mfem.org/html/classmfem_1_1Operator.html) and [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html)
|
||||
+ [`Vector`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html)
|
||||
+ [`Vector`](https://docs.mfem.org/html/classmfem_1_1Vector.html) and [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html)
|
||||
+ [`DenseMatrix`](https://docs.mfem.org/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](https://docs.mfem.org/html/classmfem_1_1SparseMatrix.html)
|
||||
+ Sparse [smoothers](https://docs.mfem.org/html/sparsesmoothers_8hpp.html) and linear [solvers](https://docs.mfem.org/html/solvers_8hpp.html)
|
||||
|
||||
@@ -209,8 +214,8 @@ shared geometric entities between different tasks. The parallel source files
|
||||
have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
|
||||
|
||||
- The main parallel classes are
|
||||
+ [`ParMesh`](https://docs.mfem.org/html/solvers_8hpp.html)
|
||||
+ [`ParNCMesh`](https://docs.mfem.org/html/classmfem_1_1ParMesh.html)
|
||||
+ [`ParMesh`](https://docs.mfem.org/html/classmfem_1_1ParMesh.html)
|
||||
+ [`ParNCMesh`](https://docs.mfem.org/html/classmfem_1_1ParNCMesh.html)
|
||||
+ [`ParFiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1ParFiniteElementSpace.html)
|
||||
+ [`ParGridFunction`](https://docs.mfem.org/html/classmfem_1_1ParGridFunction.html)
|
||||
+ [`ParBilinearForm`](https://docs.mfem.org/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](https://docs.mfem.org/html/classmfem_1_1ParLinearForm.html)
|
||||
@@ -220,14 +225,14 @@ have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
|
||||
#### GPU and general device support
|
||||
|
||||
GPU and multi-core CPU support is based on device kernels supporting different
|
||||
backends (CUDA, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
|
||||
backends (CUDA, HIP, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
|
||||
device/host memory manager.
|
||||
|
||||
- The main device-relevant classes and sources are:
|
||||
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
|
||||
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
|
||||
+ the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
|
||||
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
|
||||
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html), [`hip.hpp`](https://docs.mfem.org/html/hip_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
|
||||
|
||||
#### Utilities, building and documentation
|
||||
- The `general/` directory contains C++ classes that serve as utilities for
|
||||
@@ -241,8 +246,8 @@ device/host memory manager.
|
||||
- `examples` and `miniapps` respectively gather simple and more fully-featured
|
||||
demonstrations of the usage on MFEM. They both rely on `data/` for the
|
||||
collection of meshes.
|
||||
- The `tests/` directory contains a unit test suite and will later contain more
|
||||
tests that run example codes.
|
||||
- The `tests/` directory contains a unit test suite, additional tests, and
|
||||
benchmarks.
|
||||
|
||||
See also the [code overview](https://mfem.org/code-overview/) section on the MFEM
|
||||
website.
|
||||
@@ -276,8 +281,8 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
the top of https://github.com/mfem.
|
||||
- Consider making your membership public by going to https://github.com/orgs/mfem/people
|
||||
and clicking on the organization visibility drop box next to your name.
|
||||
- Project discussions and announcements will be posted at
|
||||
https://github.com/orgs/mfem/teams/everyone.
|
||||
- Project discussions and announcements will be posted at https://github.com/orgs/mfem/discussions,
|
||||
tagging the `@mfem/everyone` team when appropriate.
|
||||
|
||||
#### Structure
|
||||
- The MFEM source code is in the [mfem](https://github.com/mfem/mfem)
|
||||
@@ -337,11 +342,12 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
- Well-designed simple code is frequently more general and powerful.
|
||||
- Lean code base is easier to understand by new collaborators.
|
||||
- New features should be added only if they are necessary or generally useful.
|
||||
- Introduction of language constructions not currently used in MFEM should be
|
||||
- Introduction of language constructs not currently used in MFEM should be
|
||||
justified and generally avoided (to maintain portability to various systems
|
||||
and compilers, including early access hardware).
|
||||
- We prefer basic C++ and the C++03 standard, to keep the code readable by
|
||||
a large audience and to make sure it compiles anywhere.
|
||||
- We prefer basic C++. Use C++17 features judiciously, prioritizing readability,
|
||||
consistency with existing MFEM code, and portability to different systems,
|
||||
compilers and device backends.
|
||||
|
||||
- *Keep the code general and reasonably efficient*
|
||||
- The main goal is fast prototyping for research and application development.
|
||||
@@ -384,7 +390,7 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
- When your branch is ready for other developers to review / comment on
|
||||
the code, create a pull request towards `mfem:master`.
|
||||
|
||||
- Pull request typically have titles like:
|
||||
- Pull requests typically have titles like:
|
||||
|
||||
`Description [new-feature-dev]`
|
||||
|
||||
@@ -405,12 +411,12 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
- Add a description, appropriate labels and assign yourself to the PR. The MFEM
|
||||
team will add reviewers as appropriate.
|
||||
|
||||
- List outstanding TODO items in the description, see PR #222 for an example.
|
||||
- List outstanding TODO items in the description.
|
||||
|
||||
- When your contribution is fully working and ready to be reviewed, add
|
||||
the `ready-for-review` label.
|
||||
or request the `ready-for-review` label.
|
||||
|
||||
- PRs are treated similarly to journal submission with an "editor" assigning
|
||||
- PRs are treated similarly to journal submission, with an "editor" assigning
|
||||
two reviewers to evaluate the changes. The reviewers have 3 weeks to evaluate
|
||||
the PR and work with the author to implement improvements and fix issues.
|
||||
|
||||
@@ -436,7 +442,7 @@ Before you can start, you need a GitHub account, here are a few suggestions:
|
||||
checks in GitHub Actions enforce MFEM-specific rules which are explained in
|
||||
the error messages and the `tests/scripts` directory.
|
||||
|
||||
- Also note that the tests `branch-history` and `repos-checks` found in GitHub
|
||||
- Also note that the tests `branch-history` and `repo-check` found in GitHub
|
||||
Actions can be triggered automatically before each push using git hooks. See
|
||||
the [git hooks README](config/githooks/README.md) for a detailed explanation.
|
||||
|
||||
@@ -493,15 +499,15 @@ Everyone on the MFEM team can be asked to serve as a reviewer on a PR in their a
|
||||
|
||||
3. To ensure the quality of the PR by making sure that the code adheres to the [Developer Guidelines](#developer-guidelines), e.g. all methods, data members, and functions have documentation, including data ownership and lifetime, new examples/miniapps have a corresponding PR in mfem/web, major features have `CHANGELOG` entries, etc.
|
||||
|
||||
3. To seek help from the editors in case of difficulties.
|
||||
4. To seek help from the editors in case of difficulties.
|
||||
|
||||
4. To complete the review in a timely manner: 3 weeks from assignment.
|
||||
5. To complete the review in a timely manner: 3 weeks from assignment.
|
||||
|
||||
5. To test the PR thoroughly before merging in *next*. The PR author is also encouraged to perform testing and inform the reviewers about the results.
|
||||
6. To test the PR thoroughly before merging in *next*. The PR author is also encouraged to perform testing and inform the reviewers about the results.
|
||||
|
||||
6. To monitor the PR impact on the testing in the *next* branch and alert the editors that the PR is ready for merging in *master*.
|
||||
7. To monitor the PR impact on the testing in the *next* branch and alert the editors that the PR is ready for merging in *master*.
|
||||
|
||||
7. The review of bugfixes should be expedited proportional to their importance. The review window can be much less than three weeks in such cases.
|
||||
8. The review of bugfixes should be expedited proportional to their importance. The review window can be much less than three weeks in such cases.
|
||||
|
||||
#### Responsibilities of Authors
|
||||
|
||||
@@ -527,30 +533,30 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Code builds.
|
||||
- [ ] Code passes `make style`.
|
||||
- [ ] Update `CHANGELOG`:
|
||||
- [ ] Is this a new feature users need to be aware of? New or updated example or miniapp?
|
||||
- [ ] Does it make sense to create a new section in the `CHANGELOG` to group with other related features?
|
||||
- [ ] Is this a new feature users need to be aware of? New or updated example or miniapp?
|
||||
- [ ] Does it make sense to create a new section in the `CHANGELOG` to group with other related features?
|
||||
- [ ] Update `INSTALL`:
|
||||
- [ ] Had a new optional library been added? If so, what range of versions of this library are required? (*Make sure the external library is compatible with our BSD license, e.g. it is not licensed under GPL!*)
|
||||
- [ ] Have the version ranges for any required or optional libraries changed?
|
||||
- [ ] Does `make` or `cmake` have a new target?
|
||||
- [ ] Did the requirements or the installation process change? *(rare)*
|
||||
- [ ] Has a new optional library been added? If so, what range of versions of this library are required? (*Make sure the external library is compatible with our BSD license, e.g. it is not licensed under GPL!*)
|
||||
- [ ] Have the version ranges for any required or optional libraries changed?
|
||||
- [ ] Does `make` or `cmake` have a new target?
|
||||
- [ ] Did the requirements or the installation process change? *(rare)*
|
||||
- [ ] Update continuous integration server configurations if necessary (e.g. with new version requirements for each of MFEM's dependencies)
|
||||
- [ ] `.github`
|
||||
- [ ] `.appveyor.yml`
|
||||
- [ ] `.github`
|
||||
- [ ] `.appveyor.yml`
|
||||
- [ ] Update `.gitignore`:
|
||||
- [ ] Check if `make distclean; git status` shows any files that were generated from the source by the project (not an IDE) but we don't want to track in the repository.
|
||||
- [ ] Add new patterns (just for the new files above) and re-run the above test.
|
||||
- [ ] Check if `make distclean; git status` shows any files that were generated from the source by the project (not an IDE) but we don't want to track in the repository.
|
||||
- [ ] Add new patterns (just for the new files above) and re-run the above test.
|
||||
- [ ] New examples:
|
||||
- [ ] All sample runs at the top of the example source file work.
|
||||
- [ ] Update `examples/makefile`:
|
||||
- [ ] All sample runs at the top of the example source file work.
|
||||
- [ ] Update `examples/makefile`:
|
||||
- [ ] Add the example code to the appropriate `SEQ_EXAMPLES` and `PAR_EXAMPLES` variables.
|
||||
- [ ] Add any files generated by it to the `clean` target.
|
||||
- [ ] Add the example binary and any files generated by it to the top-level `.gitignore` file.
|
||||
- [ ] Update `examples/CMakeLists.txt`:
|
||||
- [ ] Update `examples/CMakeLists.txt`:
|
||||
- [ ] Add the example code to the `ALL_EXE_SRCS` variable.
|
||||
- [ ] Make sure `THIS_TEST_OPTIONS` is set correctly for the new example.
|
||||
- [ ] List the new example in `doc/CodeDocumentation.dox`.
|
||||
- [ ] If new examples directory (e.g.`examples/pumi`), list it in `doc/CodeDocumentation.conf.in`
|
||||
- [ ] If new examples directory (e.g. `examples/pumi`), list it in `doc/CodeDocumentation.conf.in`
|
||||
- [ ] Companion pull request for documentation in [mfem/web](https://github.com/mfem/web) repo:
|
||||
- [ ] Update or add example-specific documentation, see e.g. the `src/examples.md`.
|
||||
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
|
||||
@@ -567,13 +573,13 @@ Before a PR can be merged, it should satisfy the following:
|
||||
- [ ] Add/update the `CMakeLists.txt` file in the new miniapp directory.
|
||||
- [ ] Consider adding a new test for the new miniapp.
|
||||
- [ ] List the new miniapp in `doc/CodeDocumentation.dox`
|
||||
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), add it to `MINIAPP_SUBDIRS` in the `makefile`.
|
||||
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), list it in `doc/CodeDocumentation.conf.in`
|
||||
- [ ] If new miniapps directory (e.g. `miniapps/nurbs`), add it to `MINIAPP_SUBDIRS` in the `makefile`.
|
||||
- [ ] If new miniapps directory (e.g. `miniapps/nurbs`), list it in `doc/CodeDocumentation.conf.in`
|
||||
- [ ] Companion pull request for documentation in [mfem/web](https://github.com/mfem/web) repo:
|
||||
- [ ] Update or add miniapp-specific documentation, see e.g. the `src/meshing.md` and `src/electromagnetics.md` files.
|
||||
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
|
||||
- [ ] The miniapps go at the end of the page, and are usually listed only under a specific "Application (PDE)" category.
|
||||
- [ ] Add a short description of the miniapp in the "Extensive Examples" section of `features.md`.
|
||||
- [ ] Update or add miniapp-specific documentation, see e.g. the `src/meshing.md` and `src/electromagnetics.md` files.
|
||||
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
|
||||
- [ ] The miniapps go at the end of the page, and are usually listed only under a specific "Application (PDE)" category.
|
||||
- [ ] Add a short description of the miniapp in the "Extensive Examples" section of `features.md`.
|
||||
- [ ] New capability:
|
||||
- [ ] All new public, protected, and private classes, methods, data members, and functions have full Doxygen-style documentation in source comments. Documentation should include descriptions of member data, function arguments and return values, template parameters, and prerequisites for calling new functions.
|
||||
- [ ] Pointer arguments and return values must specify whether ownership is being transferred or lent with the call.
|
||||
@@ -675,7 +681,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
|
||||
- [ ] Update URL shortlinks:
|
||||
- [ ] Create a shortlink at [http://bit.ly/](http://bit.ly/) for the release tarball, e.g. https://mfem.github.io/releases/mfem-3.1.tgz.
|
||||
- [ ] (LLNL only) Add and commit the new shortlink in the `links` and `links-mfem` files of the internal `mfem/downloads` repo.
|
||||
- [ ] Add the new shortlinks to the MFEM packages in `spack`, `homebrew/science`, `VisIt`, etc.
|
||||
- [ ] Add the new shortlinks to the MFEM package in `spack`.
|
||||
- [ ] Update website in `mfem/web` repo:
|
||||
- Update version and shortlinks in `src/index.md` and `src/download.md`.
|
||||
- Use [cloc-1.62.pl](http://cloc.sourceforge.net/) and `ls -lh` to estimate the SLOC and the tarball size in `src/download.md`.
|
||||
@@ -727,22 +733,24 @@ commit or push, see the [README](config/githooks/README.md) in the `config/githo
|
||||
directory.
|
||||
|
||||
|
||||
### Linux and Mac smoke tests
|
||||
### GitHub Actions smoke tests
|
||||
|
||||
We use GitHub Actions to drive the default tests on the `master` and `next`
|
||||
branches. See the `.github/workflows` files and the logs at
|
||||
[https://github.com/mfem/mfem/actions](https://github.com/mfem/mfem/actions).
|
||||
|
||||
Testing using GitHub Actions should be kept lightweight, as there is a time
|
||||
constraint on jobs. Two virtual machines are configured - Mac (OS X) and Linux.
|
||||
GitHub Actions testing should be kept lightweight, as there is a time
|
||||
constraint on jobs. The current workflows cover Linux, macOS, and Windows
|
||||
configurations.
|
||||
|
||||
- Tests on the `master` branch are triggered whenever a PR is issued on this branch.
|
||||
- Tests on the `next` branch are currently scheduled to run each night.
|
||||
|
||||
### Additional Windows smoke test
|
||||
|
||||
### Windows smoke test
|
||||
We use Appveyor to test building with the MS Visual C++ compiler in a Windows
|
||||
environment, as well as to test the CMake build. See the `.appveyor` file and the
|
||||
build logs at
|
||||
We also use Appveyor to test building with the MS Visual C++ compiler in a Windows
|
||||
environment, as well as to test the CMake build. See the `.appveyor.yml` file
|
||||
and the build logs at
|
||||
[https://ci.appveyor.com/project/mfem/mfem](https://ci.appveyor.com/project/mfem/mfem).
|
||||
|
||||
CMake is used to generate the MSVC Project files and drive the build. A release
|
||||
|
||||
@@ -38,14 +38,13 @@ the option MFEM_USE_METIS.
|
||||
MFEM also includes support for devices such as GPUs, and programming models such
|
||||
as CUDA, HIP, OCCA, OpenMP and RAJA.
|
||||
|
||||
- Starting with version 4.0, MFEM requires a C++11 compiler. We recommend using
|
||||
a newer compiler, e.g. GCC version 4.9 or higher.
|
||||
- Starting with version 4.9, MFEM requires a C++17 compiler.
|
||||
|
||||
- CUDA support requires an NVIDIA GPU and an installation of the CUDA Toolkit
|
||||
https://developer.nvidia.com/cuda-toolkit
|
||||
|
||||
- HIP support requires an AMD GPU and an installation of the ROCm software stack
|
||||
https://rocmdocs.amd.com
|
||||
https://rocm.docs.amd.com
|
||||
|
||||
- OCCA support requires the OCCA library
|
||||
https://libocca.org
|
||||
@@ -83,9 +82,9 @@ Serial build:
|
||||
Parallel build:
|
||||
(download hypre and METIS 4 from above URLs)
|
||||
(build METIS 4 in ../metis-4.0 relative to mfem/)
|
||||
(for METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
|
||||
(build hypre in ../hypre relative to mfem/)
|
||||
make parallel -j 4
|
||||
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
|
||||
|
||||
CUDA build:
|
||||
make cuda -j 4
|
||||
@@ -115,14 +114,14 @@ Serial build:
|
||||
Parallel build:
|
||||
(download hypre and METIS 4 from above URLs)
|
||||
(build METIS 4 in ../metis-4.0 relative to mfem/)
|
||||
(for METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
|
||||
(build hypre in ../hypre relative to mfem/)
|
||||
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
|
||||
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES
|
||||
make -j 4
|
||||
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
|
||||
|
||||
Parallel build with fetching of hypre and METIS:
|
||||
mkdir <mfem-buil-dir> ; cd <mfem-build-dir>
|
||||
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
|
||||
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES -DMFEM_FETCH_TPLS=YES
|
||||
make -j 4
|
||||
|
||||
@@ -134,7 +133,8 @@ CUDA build:
|
||||
|
||||
HIP build:
|
||||
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
|
||||
cmake <mfem-source-dir> -DMFEM_USE_HIP=YES -DHIP_ARCH=gfx942 -DCMAKE_CXX_COMPILER=amdclang++ -DCMAKE_HIP_COMPILER=amdclang++
|
||||
cmake <mfem-source-dir> -DMFEM_USE_HIP=YES -DHIP_ARCH=gfx942 \
|
||||
-DCMAKE_CXX_COMPILER=amdclang++ -DCMAKE_HIP_COMPILER=amdclang++
|
||||
make -j 4
|
||||
|
||||
Example codes (serial/parallel, depending on the build):
|
||||
@@ -269,6 +269,7 @@ Compilers:
|
||||
CXX - C++ compiler, serial build
|
||||
MPICXX - MPI C++ compiler, parallel build
|
||||
CUDA_CXX - The CUDA compiler, 'nvcc' or 'clang++'
|
||||
HIP_CXX - The HIP compiler, e.g. 'hipcc'
|
||||
|
||||
Compiler options:
|
||||
OPTIM_FLAGS - Options for optimized build
|
||||
@@ -395,6 +396,11 @@ MFEM_USE_STRUMPACK = YES/NO
|
||||
classes. When enabled, this option uses the STRUMPACK_* library options, see
|
||||
below.
|
||||
|
||||
MFEM_USE_CUDSS = YES/NO
|
||||
Enable MFEM functionality based on the cuDSS library. When using cuDSS, CUDA
|
||||
support must be also enabled in MFEM, i.e. MFEM_USE_CUDA=YES must be set.
|
||||
When enabled, this option uses the CUDSS_* library options, see below.
|
||||
|
||||
MFEM_USE_GINKGO = YES/NO
|
||||
Enable MFEM functionality based on the Ginkgo library, which provides
|
||||
iterative linear solvers and preconditioners with OpenMP, CUDA backends, see
|
||||
@@ -554,13 +560,13 @@ MFEM_USE_RAJA = YES/NO
|
||||
MFEM_USE_OCCA = YES/NO
|
||||
Enables support for the OCCA library in MFEM. OCCA is an open-source library
|
||||
which aims to make it easy to program different types of devices (e.g. CPU,
|
||||
GPU, FPGA) by providing an unified API for interacting with JIT-compiled
|
||||
GPU, FPGA) by providing a unified API for interacting with JIT-compiled
|
||||
backends. In order to use the OCCA CUDA backend, CUDA support must be enabled
|
||||
in MFEM as well, i.e. MFEM_USE_CUDA=YES must be set.
|
||||
|
||||
MFEM_USE_GSLIB = YES/NO
|
||||
Enables MFEM functionality based on the GSLIB library, and specifically its
|
||||
FindPoints component, which provides a robust algorithms to evaluate finite
|
||||
FindPoints component, which provides robust algorithms to evaluate finite
|
||||
element functions in a collection of points in physical space. When enabled,
|
||||
the user can use the GSLIB-FindPoints methods as shown in miniapps/gslib.
|
||||
|
||||
@@ -719,9 +725,18 @@ The specific libraries and their options are:
|
||||
Options: STRUMPACK_OPT, STRUMPACK_LIB.
|
||||
Versions: STRUMPACK >= 3.0.0.
|
||||
|
||||
- Ginkgo (optional), used when MFEM_USE_GINKGO = YES. Note that Ginkgo needs a
|
||||
C++ compiler that supports the C++-17 standard. For additional requirements
|
||||
and dependencies of specific modules, see the Ginkgo webpage below.
|
||||
- CUDSS (optional), used when MFEM_USE_CUDSS = YES. Note that CUDSS requires
|
||||
CUDA 12.x toolkit and the cuDSS libraries. The supported communication backend
|
||||
is OpenMPI 4.x (default), and OpenMPI 4.x or a later version must be pre-built.
|
||||
The source files in the cuDSS tarball provide guidance for developing custom
|
||||
MPI implementations.
|
||||
URL: https://developer.nvidia.com/cudss
|
||||
https://docs.nvidia.com/cuda/cudss/advanced_features.html#communication-layer-library-in-cudss
|
||||
Options: CUDSS_OPT, CUDSS_LIB.
|
||||
Versions: cuDSS >= 0.6.0.
|
||||
|
||||
- Ginkgo (optional), used when MFEM_USE_GINKGO = YES. Ginkgo may have additional
|
||||
requirements and module-specific dependencies; see the webpage below.
|
||||
URL: https://ginkgo-project.github.io
|
||||
Options: GINKGO_OPT, GINKGO_LIB, GINKGO_DIR, GINKGO_BUILD_TYPE (Release or
|
||||
Debug).
|
||||
@@ -793,7 +808,7 @@ The specific libraries and their options are:
|
||||
Options: CONDUIT_OPT, CONDUIT_LIB.
|
||||
Versions: Conduit >= 0.3.1.
|
||||
|
||||
- ADIOS2 (optional) used when MFEM_USE_ADIOS2 = YES.
|
||||
- ADIOS2 (optional), used when MFEM_USE_ADIOS2 = YES.
|
||||
URL: https://adios2.readthedocs.io/
|
||||
Versions: ADIOS >= 2.5.0.
|
||||
|
||||
@@ -869,7 +884,7 @@ The specific libraries and their options are:
|
||||
Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
|
||||
Versions: RAJA >= 2022.10.3.
|
||||
|
||||
- Moonolith (optional), use when MFEM_USE_MOONOLITH = YES.
|
||||
- Moonolith (optional), used when MFEM_USE_MOONOLITH = YES.
|
||||
URL: https://bitbucket.org/zulianp/par_moonolith
|
||||
Options: MOONOLITH_DIR
|
||||
Versions: MOONOLITH >= 1.1.0.
|
||||
@@ -957,7 +972,7 @@ CMAKE_BUILD_TYPE which can be set to standard values like "Debug", and "Release"
|
||||
To use a specific generator use the "-G <generator>" option of cmake:
|
||||
|
||||
cmake <mfem-source-dir> -G "Xcode"
|
||||
cmake <mfem-source-dir> -G "Visual Studio 12 2013"
|
||||
cmake <mfem-source-dir> -G "Visual Studio 17 2022"
|
||||
cmake <mfem-source-dir> -G "MinGW Makefiles"
|
||||
|
||||
With CMake it is possible to build MFEM as a shared library using the standard
|
||||
@@ -1202,7 +1217,7 @@ larger problems, there are two options:
|
||||
Specific options for HIP
|
||||
========================
|
||||
MFEM expects the `ROCM_PATH` environment variable to be set to the path of the
|
||||
ROCM install, as well as having `$ROCM_PATH/bin` in `PATH`.
|
||||
ROCm install, as well as having `$ROCM_PATH/bin` in `PATH`.
|
||||
|
||||
Specific options for RAJA+HIP+MPI
|
||||
=================================
|
||||
|
||||
@@ -28,6 +28,7 @@ license files. These software products and their licenses are as follows:
|
||||
* AmgXWrapper (linalg/amgxsolver.{hpp,cpp}) -- MIT license
|
||||
* Catch++ (tests/unit/catch.hpp) -- Boost 1.0 license
|
||||
* Gecko (general/gecko.{cpp,hpp}) -- BSD 3-clause license
|
||||
* gslib (fem/gslib.{cpp,hpp}, mesh/bb_grid_map.{cpp,hpp}) -- BSD 3-clause license
|
||||
* Picojson (fem/picojson.h) -- Custom 2-clause license
|
||||
* TinyXML2 (general/tinyxml2.{cpp,h}) -- zlib license
|
||||
* Zstr (general/zstr.hpp) -- MIT license
|
||||
|
||||
@@ -35,6 +35,7 @@ set(MFEM_USE_SUITESPARSE @MFEM_USE_SUITESPARSE@)
|
||||
set(MFEM_USE_SUPERLU @MFEM_USE_SUPERLU@)
|
||||
set(MFEM_USE_MUMPS @MFEM_USE_MUMPS@)
|
||||
set(MFEM_USE_STRUMPACK @MFEM_USE_STRUMPACK@)
|
||||
set(MFEM_USE_CUDSS @MFEM_USE_CUDSS@)
|
||||
set(MFEM_USE_GINKGO @MFEM_USE_GINKGO@)
|
||||
set(MFEM_USE_AMGX @MFEM_USE_AMGX@)
|
||||
set(MFEM_USE_MAGMA @MFEM_USE_MAGMA@)
|
||||
@@ -109,6 +110,14 @@ if (MFEM_USE_RAJA)
|
||||
find_dependency(RAJA)
|
||||
endif()
|
||||
|
||||
if (MFEM_USE_CUDSS)
|
||||
find_dependency(cudss)
|
||||
endif (MFEM_USE_CUDSS)
|
||||
|
||||
if (MFEM_USE_UMPIRE)
|
||||
find_dependency(umpire)
|
||||
endif()
|
||||
|
||||
if (NOT TARGET mfem)
|
||||
include(${CMAKE_CURRENT_LIST_DIR}/MFEMTargets.cmake)
|
||||
endif (NOT TARGET mfem)
|
||||
|
||||
@@ -108,6 +108,15 @@
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
#cmakedefine MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable MFEM functionality based on the cuDSS library.
|
||||
#cmakedefine MFEM_USE_CUDSS
|
||||
|
||||
// CUDSS communication layer library path
|
||||
#cmakedefine MFEM_CUDSS_COMM_LIB "@MFEM_CUDSS_COMM_LIB@"
|
||||
|
||||
// CUDSS threading layer library path
|
||||
#cmakedefine MFEM_CUDSS_THREADING_LIB "@MFEM_CUDSS_THREADING_LIB@"
|
||||
|
||||
// Enable functionality based on the Ginkgo library.
|
||||
#cmakedefine MFEM_USE_GINKGO
|
||||
|
||||
|
||||
@@ -0,0 +1,68 @@
|
||||
if (NOT cudss_DIR AND CUDSS_DIR)
|
||||
set(cudss_DIR ${CUDSS_DIR}/lib/cmake/cudss)
|
||||
endif()
|
||||
message(STATUS "Looking for CUDSS ...")
|
||||
message(STATUS " in CUDSS_DIR = ${CUDSS_DIR}")
|
||||
message(STATUS " cudss_DIR = ${cudss_DIR}")
|
||||
find_package(cudss)
|
||||
set(CUDSS_FOUND ${cudss_FOUND})
|
||||
set(CUDSS_LIBRARIES "cudss")
|
||||
if (CUDSS_FOUND)
|
||||
message(STATUS
|
||||
"Found CUDSS target: ${CUDSS_LIBRARIES} (version: ${cudss_VERSION})")
|
||||
else()
|
||||
set(msg STATUS)
|
||||
if (CUDSS_FIND_REQUIRED)
|
||||
set(msg FATAL_ERROR)
|
||||
endif()
|
||||
message(${msg}
|
||||
"CUDSS not found. Please set CUDSS_DIR to the install prefix.")
|
||||
endif()
|
||||
|
||||
if(CUDSS_FOUND AND TARGET cudss)
|
||||
get_target_property(CUDSS_LIBRARY_LOCATION cudss IMPORTED_LOCATION)
|
||||
if(NOT CUDSS_LIBRARY_LOCATION)
|
||||
get_target_property(CUDSS_LIBRARY_LOCATION cudss IMPORTED_LOCATION_RELEASE)
|
||||
endif()
|
||||
if(CUDSS_LIBRARY_LOCATION)
|
||||
get_filename_component(CUDSS_LIBRARY_DIR "${CUDSS_LIBRARY_LOCATION}" DIRECTORY)
|
||||
else()
|
||||
message(WARNING "Could not determine the location of the cuDSS library.")
|
||||
endif()
|
||||
else()
|
||||
message(WARNING "cuDSS target not available; cannot determine library directory.")
|
||||
endif()
|
||||
|
||||
# Set the full name of the cuDSS threading library if OpenMP is enabled.
|
||||
# The threading layer library (libcudss_mtlayer_gomp.so) is located under the
|
||||
# cuDSS library directory by default.
|
||||
if (MFEM_USE_OPENMP)
|
||||
find_file(
|
||||
CUDSS_THREADING_LIB
|
||||
NAMES libcudss_mtlayer_gomp.so
|
||||
PATHS ${CUDSS_LIBRARY_DIR}
|
||||
NO_DEFAULT_PATH
|
||||
)
|
||||
if (NOT DEFINED MFEM_CUDSS_THREADING_LIB AND CUDSS_THREADING_LIB)
|
||||
set(MFEM_CUDSS_THREADING_LIB "${CUDSS_THREADING_LIB}")
|
||||
endif()
|
||||
message(STATUS "CUDSS threading layer library: ${MFEM_CUDSS_THREADING_LIB}")
|
||||
endif()
|
||||
|
||||
# Set the full name of the cuDSS communication library if MFEM use OpenMPI.
|
||||
# The communication layer library (libcudss_commlayer_mpi.so) is located under the
|
||||
# cuDSS library directory by default.
|
||||
# The communication layer library is used pre-built communication layers for OpenMPI
|
||||
# by default.
|
||||
if (MFEM_USE_MPI)
|
||||
find_file(
|
||||
CUDSS_COMM_LIB
|
||||
NAMES libcudss_commlayer_openmpi.so
|
||||
PATHS ${CUDSS_LIBRARY_DIR}
|
||||
NO_DEFAULT_PATH
|
||||
)
|
||||
if (NOT DEFINED MFEM_CUDSS_COMM_LIB AND CUDSS_COMM_LIB)
|
||||
set(MFEM_CUDSS_COMM_LIB "${CUDSS_COMM_LIB}")
|
||||
endif()
|
||||
message(STATUS "CUDSS communication layer library: ${MFEM_CUDSS_COMM_LIB}")
|
||||
endif()
|
||||
@@ -14,12 +14,12 @@
|
||||
# - UMPIRE_LIBRARIES
|
||||
# - UMPIRE_INCLUDE_DIRS
|
||||
|
||||
if (NOT umpire_DIR AND UMPIRE_DIR)
|
||||
set(umpire_DIR ${UMPIRE_DIR}/lib/cmake/umpire)
|
||||
if (NOT umpire_ROOT AND UMPIRE_DIR)
|
||||
set(umpire_ROOT ${UMPIRE_DIR})
|
||||
endif()
|
||||
message(STATUS "Looking for UMPIRE ...")
|
||||
message(STATUS " in UMPIRE_DIR = ${UMPIRE_DIR}")
|
||||
message(STATUS " umpire_DIR = ${umpire_DIR}")
|
||||
message(STATUS " umpire_ROOT = ${umpire_ROOT}")
|
||||
find_package(umpire CONFIG)
|
||||
set(UMPIRE_FOUND ${umpire_FOUND})
|
||||
set(UMPIRE_LIBRARIES "umpire")
|
||||
|
||||
@@ -157,4 +157,28 @@ constexpr real_t operator""_r(unsigned long long v)
|
||||
#endif
|
||||
#endif // MFEM_USE_MPI not defined
|
||||
|
||||
#ifndef MFEM_USE_CUDA
|
||||
#ifdef MFEM_USE_CUDSS
|
||||
#error Building with cuDSS (MFEM_USE_CUDSS=YES) requires CUDA (MFEM_USE_CUDA=YES)
|
||||
#endif
|
||||
#endif // MFEM_USE_CUDSS not defined
|
||||
|
||||
#ifdef NVTX_DBG_HPP
|
||||
#include NVTX_DBG_HPP // IWYU pragma: keep
|
||||
#else
|
||||
#define db1(...)
|
||||
#define dbg(...)
|
||||
#define dbl(...)
|
||||
#define dba(...)
|
||||
#define dbc(...)
|
||||
#define NVTX_MARK_FUNCTION
|
||||
#define NVTX_MARK_BEGIN(...)
|
||||
#define NVTX_MARK_INI(...)
|
||||
#define NVTX_MARK_END(...)
|
||||
#define NVTX_MARK(...)
|
||||
#define NVTX_INI(...)
|
||||
#define NVTX_END(...)
|
||||
#define NVTX(...)
|
||||
#endif
|
||||
|
||||
#endif // MFEM_CONFIG_HPP
|
||||
|
||||
@@ -108,6 +108,15 @@
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
// #define MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable MFEM functionality based on the cuDSS library.
|
||||
// #define MFEM_USE_CUDSS
|
||||
|
||||
// CUDSS communication layer library path
|
||||
// #define MFEM_CUDSS_COMM_LIB "@MFEM_CUDSS_COMM_LIB@"
|
||||
|
||||
// CUDSS threading layer library path
|
||||
// #define MFEM_CUDSS_THREADING_LIB "@MFEM_CUDSS_THREADING_LIB@"
|
||||
|
||||
// Enable MFEM features based on the Ginkgo library.
|
||||
// #define MFEM_USE_GINKGO
|
||||
|
||||
|
||||
@@ -36,6 +36,9 @@ MFEM_USE_SUPERLU = @MFEM_USE_SUPERLU@
|
||||
MFEM_USE_SUPERLU5 = @MFEM_USE_SUPERLU5@
|
||||
MFEM_USE_MUMPS = @MFEM_USE_MUMPS@
|
||||
MFEM_USE_STRUMPACK = @MFEM_USE_STRUMPACK@
|
||||
MFEM_USE_CUDSS = @MFEM_USE_CUDSS@
|
||||
MFEM_CUDSS_COMM_LIB = @MFEM_CUDSS_COMM_LIB@
|
||||
MFEM_CUDSS_THREADING_LIB = @MFEM_CUDSS_THREADING_LIB@
|
||||
MFEM_USE_GINKGO = @MFEM_USE_GINKGO@
|
||||
MFEM_USE_AMGX = @MFEM_USE_AMGX@
|
||||
MFEM_USE_MAGMA = @MFEM_USE_MAGMA@
|
||||
|
||||
@@ -38,6 +38,7 @@ option(MFEM_USE_SUPERLU "Enable SuperLU_DIST usage" OFF)
|
||||
option(MFEM_USE_SUPERLU5 "Use the old SuperLU_DIST 5.1 version" OFF)
|
||||
option(MFEM_USE_MUMPS "Enable MUMPS usage" OFF)
|
||||
option(MFEM_USE_STRUMPACK "Enable STRUMPACK usage" OFF)
|
||||
option(MFEM_USE_CUDSS "Enable cuDSS usage" OFF)
|
||||
option(MFEM_USE_GINKGO "Enable Ginkgo usage" OFF)
|
||||
option(MFEM_USE_AMGX "Enable AmgX usage" OFF)
|
||||
option(MFEM_USE_MAGMA "Enable MAGMA usage" OFF)
|
||||
|
||||
+15
-1
@@ -153,6 +153,7 @@ MFEM_USE_SUPERLU = NO
|
||||
MFEM_USE_SUPERLU5 = NO
|
||||
MFEM_USE_MUMPS = NO
|
||||
MFEM_USE_STRUMPACK = NO
|
||||
MFEM_USE_CUDSS = NO
|
||||
MFEM_USE_GINKGO = NO
|
||||
MFEM_USE_AMGX = NO
|
||||
MFEM_USE_MAGMA = NO
|
||||
@@ -368,6 +369,19 @@ STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
|
||||
STRUMPACK_LIB = -L$(STRUMPACK_DIR)/lib -lstrumpack $(MPI_FORTRAN_LIB)\
|
||||
$(SCOTCH_LIB) $(SCALAPACK_LIB)
|
||||
|
||||
# CUDSS library configuration
|
||||
CUDSS_DIR = @MFEM_DIR@/../cudss
|
||||
CUDSS_INCLUDE_DIR = $(CUDSS_DIR)/include
|
||||
CUDSS_LIBRARY_DIR = $(CUDSS_DIR)/lib
|
||||
CUDSS_OPT = -I$(CUDSS_INCLUDE_DIR)
|
||||
CUDSS_LIB = \
|
||||
$(XLINKER)-rpath,$(CUDSS_LIBRARY_DIR) -L$(CUDSS_LIBRARY_DIR) -lcudss
|
||||
# The cuDSS communication and threading libraries.
|
||||
MFEM_CUDSS_COMM_LIB = $(abspath $(wildcard $(or $(CUDSS_COMM_LIB),\
|
||||
$(subst @MFEM_DIR@,$(MFEM_DIR), $(CUDSS_LIBRARY_DIR)/libcudss_commlayer_openmpi.so))))
|
||||
MFEM_CUDSS_THREADING_LIB = $(abspath $(wildcard $(or $(CUDSS_THREADING_LIB),\
|
||||
$(subst @MFEM_DIR@,$(MFEM_DIR),$(CUDSS_LIBRARY_DIR)/libcudss_mtlayer_gomp.so))))
|
||||
|
||||
# Ginkgo library configuration
|
||||
GINKGO_DIR = @MFEM_DIR@/../ginkgo/install
|
||||
GINKGO_SEARCH_DIR = $(subst @MFEM_DIR@,$(MFEM_DIR),$(GINKGO_DIR))
|
||||
@@ -621,7 +635,7 @@ PARELAG_LIB = -L$(PARELAG_DIR)/build/src -lParELAG
|
||||
AXOM_DIR = @MFEM_DIR@/../axom
|
||||
TRIBOL_DIR = @MFEM_DIR@/../tribol
|
||||
TRIBOL_OPT = -I$(TRIBOL_DIR)/include -I$(AXOM_DIR)/include
|
||||
TRIBOL_LIB = -L$(TRIBOL_DIR)/lib -ltribol -lredecomp -L$(AXOM_DIR)/lib -laxom_mint\
|
||||
TRIBOL_LIB = -L$(TRIBOL_DIR)/lib -ltribol -ltribol_shared -lredecomp -L$(AXOM_DIR)/lib -laxom_mint\
|
||||
-laxom_slam -laxom_slic -laxom_core
|
||||
|
||||
# Enzyme configuration
|
||||
|
||||
@@ -215,7 +215,7 @@ if (MFEM_ENABLE_TESTING)
|
||||
add_test(NAME ex1p_ceed_np=${MFEM_MPI_NP}
|
||||
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
|
||||
${MPIEXEC_PREFLAGS}
|
||||
$<TARGET_FILE:ex1p> "-no-vis" "-d ceed-cpu" "-pa" "-a"
|
||||
$<TARGET_FILE:ex1p> "-no-vis" "-d" "ceed-cpu" "-pa" "-a"
|
||||
${MPIEXEC_POSTFLAGS})
|
||||
endif()
|
||||
endif()
|
||||
|
||||
@@ -64,7 +64,7 @@ PARALLEL_NAME := Parallel AMGX example
|
||||
$(MFEM_LIB_FILE):
|
||||
$(error The MFEM library is not build)
|
||||
|
||||
clean: clean-build
|
||||
clean: clean-build clean-exec
|
||||
|
||||
clean-build:
|
||||
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
|
||||
|
||||
@@ -64,12 +64,12 @@ ex1p-test-par: ex1p
|
||||
$(MFEM_LIB_FILE):
|
||||
$(error The MFEM library is not built)
|
||||
|
||||
clean: clean-build clean-exec $(SUBDIRS_CLEAN)
|
||||
clean: clean-build clean-exec
|
||||
|
||||
clean-build:
|
||||
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
|
||||
rm -rf *.dSYM *.TVD.*breakpoints
|
||||
|
||||
clean-exec:
|
||||
@rm -f refined.mesh displaced.mesh mesh.* ex5.mesh
|
||||
@rm -f sphere_refined.* sol.* sol_u.* sol_p.* sol_r.* sol_i.*
|
||||
@rm -f refined.mesh mesh.*
|
||||
@rm -f sol.*
|
||||
|
||||
+23
-11
@@ -224,17 +224,29 @@ int main(int argc, char *argv[])
|
||||
// 11. Solve the linear system A X = B.
|
||||
if (!pa)
|
||||
{
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
|
||||
GSSmoother M((SparseMatrix&)(*A));
|
||||
PCG(*A, M, B, X, 1, 200, 1e-12, 0.0);
|
||||
#else
|
||||
// If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
|
||||
UMFPackSolver umf_solver;
|
||||
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
umf_solver.SetOperator(*A);
|
||||
umf_solver.Mult(B, X);
|
||||
#ifdef MFEM_USE_CUDSS
|
||||
if (Device::Allows(Backend::CUDA_MASK))
|
||||
{
|
||||
// Use cuDSS to solve the system.
|
||||
CuDSSSolver cudss_solver;
|
||||
cudss_solver.SetOperator(*A);
|
||||
cudss_solver.Mult(B, X);
|
||||
}
|
||||
else
|
||||
#endif
|
||||
{
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
|
||||
GSSmoother M((SparseMatrix&)(*A));
|
||||
PCG(*A, M, B, X, 1, 200, 1e-12, 0.0);
|
||||
#else
|
||||
// If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
|
||||
UMFPackSolver umf_solver;
|
||||
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
umf_solver.SetOperator(*A);
|
||||
umf_solver.Mult(B, X);
|
||||
#endif
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -273,7 +285,7 @@ int main(int argc, char *argv[])
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << mesh << x << flush;
|
||||
|
||||
+2
-2
@@ -5,9 +5,9 @@
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tri.mesh
|
||||
// mpirun -np 4 ex12p -m ../data/beam-quad.mesh
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 462 -n 10 -o 2 -elast
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 464 -n 10 -o 2 -elast
|
||||
// mpirun -np 4 ex12p -m ../data/beam-hex.mesh -s 3878
|
||||
// mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 81
|
||||
// mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 82
|
||||
// mpirun -np 4 ex12p -m ../data/beam-tri.mesh -s 3877 -o 2 -sys
|
||||
// mpirun -np 4 ex12p -m ../data/beam-quad.mesh -s 4544 -n 6 -o 3 -elast
|
||||
// mpirun -np 4 ex12p -m ../data/beam-quad-nurbs.mesh
|
||||
|
||||
+47
-22
@@ -83,6 +83,9 @@ int main(int argc, char *argv[])
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = true;
|
||||
bool algebraic_ceed = false;
|
||||
#ifdef MFEM_USE_CUDSS
|
||||
bool cudss_solver = false;
|
||||
#endif
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -102,6 +105,10 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&algebraic_ceed, "-a", "--algebraic",
|
||||
"-no-a", "--no-algebraic",
|
||||
"Use algebraic Ceed solver");
|
||||
#endif
|
||||
#ifdef MFEM_USE_CUDSS
|
||||
args.AddOption(&cudss_solver, "-cudss", "--cudss-solver", "-no-cudss",
|
||||
"--no-cudss-solver", "Use the cuDSS Solver.");
|
||||
#endif
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
@@ -248,33 +255,51 @@ int main(int argc, char *argv[])
|
||||
// 13. Solve the linear system A X = B.
|
||||
// * With full assembly, use the BoomerAMG preconditioner from hypre.
|
||||
// * With partial assembly, use Jacobi smoothing, for now.
|
||||
Solver *prec = NULL;
|
||||
if (pa)
|
||||
#ifdef MFEM_USE_CUDSS
|
||||
if (!pa && (Device::Allows(Backend::CUDA_MASK) && cudss_solver))
|
||||
{
|
||||
if (UsesTensorBasis(fespace))
|
||||
{
|
||||
if (algebraic_ceed)
|
||||
{
|
||||
prec = new ceed::AlgebraicSolver(a, ess_tdof_list);
|
||||
}
|
||||
else
|
||||
{
|
||||
prec = new OperatorJacobiSmoother(a, ess_tdof_list);
|
||||
}
|
||||
}
|
||||
// Solve using a direct solver with cuDSS
|
||||
CuDSSSolver cudss_solver(MPI_COMM_WORLD);
|
||||
cudss_solver.SetMatrixSymType(
|
||||
CuDSSSolver::SYMMETRIC_POSITIVE_DEFINITE);
|
||||
cudss_solver.SetMatrixViewType(CuDSSSolver::UPPER);
|
||||
cudss_solver.SetOperator(*A);
|
||||
cudss_solver.Mult(B, X);
|
||||
}
|
||||
else
|
||||
#endif
|
||||
{
|
||||
prec = new HypreBoomerAMG;
|
||||
Solver *prec = NULL;
|
||||
if (pa)
|
||||
{
|
||||
if (UsesTensorBasis(fespace))
|
||||
{
|
||||
if (algebraic_ceed)
|
||||
{
|
||||
prec = new ceed::AlgebraicSolver(a, ess_tdof_list);
|
||||
}
|
||||
else
|
||||
{
|
||||
prec = new OperatorJacobiSmoother(a, ess_tdof_list);
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
prec = new HypreBoomerAMG;
|
||||
}
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(2000);
|
||||
cg.SetPrintLevel(1);
|
||||
if (prec)
|
||||
{
|
||||
cg.SetPreconditioner(*prec);
|
||||
}
|
||||
cg.SetOperator(*A);
|
||||
cg.Mult(B, X);
|
||||
delete prec;
|
||||
}
|
||||
CGSolver cg(MPI_COMM_WORLD);
|
||||
cg.SetRelTol(1e-12);
|
||||
cg.SetMaxIter(2000);
|
||||
cg.SetPrintLevel(1);
|
||||
if (prec) { cg.SetPreconditioner(*prec); }
|
||||
cg.SetOperator(*A);
|
||||
cg.Mult(B, X);
|
||||
delete prec;
|
||||
|
||||
// 14. Recover the parallel grid function corresponding to X. This is the
|
||||
// local finite element solution on each processor.
|
||||
|
||||
+27
-9
@@ -302,15 +302,21 @@ int main(int argc, char *argv[])
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock_r(vishost, visport);
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_r.precision(8);
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_r << "solution\n" << *pmesh << u_exact->real()
|
||||
<< "window_title 'Exact: Real Part'" << flush;
|
||||
// Make sure all ranks have sent their real solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
|
||||
<< "window_title 'Exact: Imaginary Part'" << flush;
|
||||
// Make sure all ranks have sent their imaginary solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
}
|
||||
|
||||
// 11. Set up the parallel sesquilinear form a(.,.) on the finite element
|
||||
@@ -534,15 +540,21 @@ int main(int argc, char *argv[])
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock_r(vishost, visport);
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_r.precision(8);
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_r << "solution\n" << *pmesh << u.real()
|
||||
<< "window_title 'Solution: Real Part'" << flush;
|
||||
// Make sure all ranks have sent their real solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_i << "solution\n" << *pmesh << u.imag()
|
||||
<< "window_title 'Solution: Imaginary Part'" << flush;
|
||||
// Make sure all ranks have sent their imaginary solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
}
|
||||
if (visualization && exact_sol)
|
||||
{
|
||||
@@ -551,15 +563,21 @@ int main(int argc, char *argv[])
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock_r(vishost, visport);
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_r.precision(8);
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_r << "solution\n" << *pmesh << u_exact->real()
|
||||
<< "window_title 'Error: Real Part'" << flush;
|
||||
// Make sure all ranks have sent their real solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
socketstream sol_sock_i(vishost, visport);
|
||||
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock_i.precision(8);
|
||||
sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
|
||||
<< "window_title 'Error: Imaginary Part'" << flush;
|
||||
// Make sure all ranks have sent their imaginary solution before initiating
|
||||
// another set of GLVis connections (one from each rank):
|
||||
MPI_Barrier(pmesh->GetComm());
|
||||
}
|
||||
if (visualization)
|
||||
{
|
||||
|
||||
@@ -95,6 +95,15 @@ int main(int argc, char *argv[])
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
if (amg_elast && !static_cond && reorder_space)
|
||||
{
|
||||
if (myid == 0)
|
||||
cerr << "\nThe AMG elasticity solver requires ordering byVDIM! "
|
||||
<< "Ignoring the specified option -nodes/--by-nodes.\n"
|
||||
<< endl;
|
||||
reorder_space = false;
|
||||
}
|
||||
|
||||
// 3. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
|
||||
+11
-52
@@ -5,8 +5,8 @@
|
||||
// Sample runs:
|
||||
// ex37 -alpha 10
|
||||
// ex37 -alpha 10 -pv
|
||||
// ex37 -lambda 0.1 -mu 0.1
|
||||
// ex37 -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
|
||||
// ex37 -lambda 0.1 -mu 0.1 -growth 1
|
||||
// ex37 -o 2 -alpha 10.0 -mi 50 -vf 0.4 -ntol 1e-5 -growth 1.5
|
||||
// ex37 -r 6 -o 1 -alpha 25.0 -epsilon 0.02 -mi 50 -ntol 1e-5
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to solve a
|
||||
@@ -55,53 +55,6 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Newton iteration tolerance
|
||||
* @param max_its Newton maximum iteration number
|
||||
* @return real_t Final volume, ∫_Ω sigmoid(ψ)
|
||||
*/
|
||||
real_t proj(GridFunction &psi, real_t target_volume, real_t tol=1e-12,
|
||||
int max_its=10)
|
||||
{
|
||||
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
|
||||
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
|
||||
|
||||
LinearForm int_sigmoid_psi(psi.FESpace());
|
||||
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
LinearForm int_der_sigmoid_psi(psi.FESpace());
|
||||
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
|
||||
der_sigmoid_psi));
|
||||
bool done = false;
|
||||
for (int k=0; k<max_its; k++) // Newton iteration
|
||||
{
|
||||
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
|
||||
const real_t f = int_sigmoid_psi.Sum() - target_volume;
|
||||
|
||||
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
|
||||
const real_t df = int_der_sigmoid_psi.Sum();
|
||||
|
||||
const real_t dc = -f/df;
|
||||
psi += dc;
|
||||
if (abs(dc) < tol) { done = true; break; }
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
int_sigmoid_psi.Assemble();
|
||||
return int_sigmoid_psi.Sum();
|
||||
}
|
||||
|
||||
/*
|
||||
* ---------------------------------------------------------------
|
||||
* ALGORITHM PREAMBLE
|
||||
@@ -180,10 +133,11 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 5;
|
||||
int order = 2;
|
||||
real_t alpha = 1.0;
|
||||
real_t growth = 2;
|
||||
real_t epsilon = 0.01;
|
||||
real_t vol_fraction = 0.5;
|
||||
int max_it = 1e3;
|
||||
real_t itol = 1e-1;
|
||||
real_t itol = 1e-2;
|
||||
real_t ntol = 1e-4;
|
||||
real_t rho_min = 1e-6;
|
||||
real_t lambda = 1.0;
|
||||
@@ -198,6 +152,8 @@ int main(int argc, char *argv[])
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
|
||||
"Step length for gradient descent.");
|
||||
args.AddOption(&growth, "-growth", "--alpha-growth-rate",
|
||||
"Growth rate of step length for gradient descent.");
|
||||
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
|
||||
"Length scale for ρ.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
@@ -332,6 +288,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
|
||||
FilterSolver->SetupFEM();
|
||||
FilterSolver->AssembleDiffusionBilinear();
|
||||
|
||||
BilinearForm mass(&control_fes);
|
||||
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
|
||||
@@ -385,7 +342,7 @@ int main(int argc, char *argv[])
|
||||
// 11. Iterate:
|
||||
for (int k = 1; k <= max_it; k++)
|
||||
{
|
||||
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
|
||||
if (k > 1) { alpha = std::pow((real_t) k,growth); }
|
||||
|
||||
mfem::out << "\nStep = " << k << std::endl;
|
||||
|
||||
@@ -422,7 +379,9 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Step 5 - Update design variable ψ ← proj(ψ - αG)
|
||||
psi.Add(-alpha, grad);
|
||||
const real_t material_volume = proj(psi, target_volume);
|
||||
GridFunction alpha_grad(grad);
|
||||
alpha_grad *= alpha;
|
||||
const real_t material_volume = proj(psi, alpha_grad, target_volume);
|
||||
|
||||
// Compute ||ρ - ρ_old|| in control fes.
|
||||
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
|
||||
+189
-29
@@ -137,7 +137,7 @@ public:
|
||||
exponent(exponent_), rho_min(rho_min_)
|
||||
{
|
||||
MFEM_ASSERT(rho_min_ >= 0.0, "rho_min must be >= 0");
|
||||
MFEM_ASSERT(rho_min_ < 1.0, "rho_min must be > 1");
|
||||
MFEM_ASSERT(rho_min_ < 1.0, "rho_min must be < 1");
|
||||
MFEM_ASSERT(u, "displacement field is not set");
|
||||
MFEM_ASSERT(rho_filter, "density field is not set");
|
||||
}
|
||||
@@ -231,9 +231,12 @@ private:
|
||||
FiniteElementCollection * fec = nullptr;
|
||||
FiniteElementSpace * fes = nullptr;
|
||||
Array<int> ess_bdr;
|
||||
Array<int> ess_tdof_list;
|
||||
Array<int> neumann_bdr;
|
||||
GridFunction * u = nullptr;
|
||||
LinearForm * b = nullptr;
|
||||
BilinearForm * a = nullptr;
|
||||
OperatorPtr A;
|
||||
bool parallel;
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParMesh * pmesh = nullptr;
|
||||
@@ -267,6 +270,8 @@ public:
|
||||
void ResetFEM();
|
||||
void SetupFEM();
|
||||
|
||||
void UpdateEssentialTDofs();
|
||||
void AssembleDiffusionBilinear(bool update_ess_tdofs=true);
|
||||
void Solve();
|
||||
GridFunction * GetFEMSolution();
|
||||
LinearForm * GetLinearForm() {return b;}
|
||||
@@ -371,6 +376,130 @@ public:
|
||||
|
||||
};
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* using the Illinois method
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param alpha_grad alpha multiplied by gradient
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Illinois iteration tolerance
|
||||
* @param max_its Illinois maximum iteration number
|
||||
* @return real_t Final volume (∫_Ω sigmoid(ψ) dx)
|
||||
*/
|
||||
real_t proj(GridFunction &psi, GridFunction &alpha_grad, real_t target_volume,
|
||||
real_t tol = 1e-12, int max_its = 100)
|
||||
{
|
||||
#ifdef MFEM_USE_MPI
|
||||
FiniteElementSpace *fes = psi.FESpace();
|
||||
ParFiniteElementSpace *pfes = dynamic_cast<ParFiniteElementSpace*>(fes);
|
||||
#endif
|
||||
ConstantCoefficient zero_cf(0.0);
|
||||
real_t a = -alpha_grad.ComputeMaxError(zero_cf);
|
||||
real_t b = -a;
|
||||
real_t y = 0.0;
|
||||
|
||||
MappedGridFunctionCoefficient sigmoid_psi(
|
||||
&psi, [&y](const real_t x) { return sigmoid(x + y); });
|
||||
std::unique_ptr<LinearForm> int_sigmoid_psi;
|
||||
#ifdef MFEM_USE_MPI
|
||||
ParGridFunction *par_psi = dynamic_cast<ParGridFunction *>(&psi);
|
||||
if (par_psi)
|
||||
{
|
||||
int_sigmoid_psi.reset(new ParLinearForm(par_psi->ParFESpace()));
|
||||
}
|
||||
else
|
||||
{
|
||||
int_sigmoid_psi.reset(new LinearForm(psi.FESpace()));
|
||||
}
|
||||
#else
|
||||
int_sigmoid_psi.reset(new LinearForm(psi.FESpace()));
|
||||
#endif
|
||||
int_sigmoid_psi->AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
|
||||
y = a;
|
||||
int_sigmoid_psi->Assemble();
|
||||
real_t f_a = int_sigmoid_psi->Sum(); // f_a := f(a) + θ vol(Ω)
|
||||
|
||||
y = b;
|
||||
int_sigmoid_psi->Assemble();
|
||||
real_t f_b = int_sigmoid_psi->Sum(); // f_b := f(b) + θ vol(Ω)
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (pfes)
|
||||
{
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f_a, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f_b, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
}
|
||||
#endif
|
||||
f_a -= target_volume; // f_a := f(a)
|
||||
f_b -= target_volume; // f_b := f(b)
|
||||
real_t c = 0.0;
|
||||
real_t f_c = 0.0;
|
||||
int side = 0;
|
||||
|
||||
bool done = false;
|
||||
for (int k=0; k < max_its; k++)
|
||||
{
|
||||
c = (f_a * b - f_b * a) / (f_a - f_b);
|
||||
|
||||
if (abs(b - a) < tol * abs(b + a)) { done = true; break; }
|
||||
|
||||
y = c;
|
||||
int_sigmoid_psi->Assemble();
|
||||
f_c = int_sigmoid_psi->Sum(); // f_c := f(c) + θ vol(Ω)
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (pfes)
|
||||
{
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f_c, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
}
|
||||
#endif
|
||||
f_c -= target_volume; // f_c := f(c)
|
||||
|
||||
if (f_c * f_b > 0)
|
||||
{
|
||||
b = c;
|
||||
f_b = f_c;
|
||||
if (side == -1) { f_a /= 2.0; }
|
||||
side = -1;
|
||||
}
|
||||
else if (f_c * f_a > 0)
|
||||
{
|
||||
a = c;
|
||||
f_a = f_c;
|
||||
if (side == 1) { f_b /= 2.0; }
|
||||
side = 1;
|
||||
}
|
||||
else
|
||||
{
|
||||
done = true; break;
|
||||
}
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
y = 0.0;
|
||||
psi += c;
|
||||
int_sigmoid_psi->Assemble();
|
||||
real_t material_volume = int_sigmoid_psi->Sum();
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (pfes)
|
||||
{
|
||||
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1,
|
||||
MPITypeMap<real_t>::mpi_type, MPI_SUM, MPI_COMM_WORLD);
|
||||
}
|
||||
#endif
|
||||
return material_volume;
|
||||
}
|
||||
|
||||
// Poisson solver
|
||||
|
||||
@@ -422,12 +551,8 @@ void DiffusionSolver::SetupFEM()
|
||||
}
|
||||
}
|
||||
|
||||
void DiffusionSolver::Solve()
|
||||
void DiffusionSolver::UpdateEssentialTDofs()
|
||||
{
|
||||
OperatorPtr A;
|
||||
Vector B, X;
|
||||
Array<int> ess_tdof_list;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
@@ -440,7 +565,39 @@ void DiffusionSolver::Solve()
|
||||
#else
|
||||
fes->GetEssentialTrueDofs(ess_bdr,ess_tdof_list);
|
||||
#endif
|
||||
*u=0.0;
|
||||
}
|
||||
|
||||
void DiffusionSolver::AssembleDiffusionBilinear(bool update_ess_tdofs)
|
||||
{
|
||||
if (update_ess_tdofs)
|
||||
{
|
||||
UpdateEssentialTDofs();
|
||||
}
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
a = new ParBilinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
a = new BilinearForm(fes);
|
||||
}
|
||||
#else
|
||||
a = new BilinearForm(fes);
|
||||
#endif
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(*diffcf));
|
||||
if (masscf)
|
||||
{
|
||||
a->AddDomainIntegrator(new MassIntegrator(*masscf));
|
||||
}
|
||||
a->Assemble();
|
||||
a->FormSystemMatrix(ess_tdof_list, A);
|
||||
}
|
||||
|
||||
void DiffusionSolver::Solve()
|
||||
{
|
||||
Vector B, X;
|
||||
|
||||
if (b)
|
||||
{
|
||||
delete b;
|
||||
@@ -475,31 +632,33 @@ void DiffusionSolver::Solve()
|
||||
|
||||
b->Assemble();
|
||||
|
||||
BilinearForm * a = nullptr;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
a = new ParBilinearForm(pfes);
|
||||
}
|
||||
else
|
||||
{
|
||||
a = new BilinearForm(fes);
|
||||
}
|
||||
#else
|
||||
a = new BilinearForm(fes);
|
||||
#endif
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(*diffcf));
|
||||
if (masscf)
|
||||
{
|
||||
a->AddDomainIntegrator(new MassIntegrator(*masscf));
|
||||
}
|
||||
a->Assemble();
|
||||
*u=0.0;
|
||||
if (essbdr_cf)
|
||||
{
|
||||
u->ProjectBdrCoefficient(*essbdr_cf,ess_bdr);
|
||||
}
|
||||
a->FormLinearSystem(ess_tdof_list, *u, *b, A, X, B);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (parallel)
|
||||
{
|
||||
X.SetSize(pfes->TrueVSize());
|
||||
B.SetSize(pfes->TrueVSize());
|
||||
dynamic_cast<ParGridFunction*>(u)->ParallelAssemble(X);
|
||||
dynamic_cast<ParLinearForm*>(b)->ParallelAssemble(B);
|
||||
dynamic_cast<ParBilinearForm*>(a)->ParallelEliminateTDofsInRHS(
|
||||
ess_tdof_list, X, B);
|
||||
}
|
||||
else
|
||||
{
|
||||
X.NewDataAndSize(u->GetData(), u->Size());
|
||||
B.NewDataAndSize(b->GetData(), b->Size());
|
||||
a->EliminateVDofsInRHS(ess_tdof_list, X, B);
|
||||
}
|
||||
#else
|
||||
X.NewDataAndSize(u->GetData(), u->Size());
|
||||
B.NewDataAndSize(b->GetData(), b->Size());
|
||||
a->EliminateVDofsInRHS(ess_tdof_list, X, B);
|
||||
#endif
|
||||
|
||||
CGSolver * cg = nullptr;
|
||||
Solver * M = nullptr;
|
||||
@@ -528,7 +687,6 @@ void DiffusionSolver::Solve()
|
||||
delete M;
|
||||
delete cg;
|
||||
a->RecoverFEMSolution(X, *b, *u);
|
||||
delete a;
|
||||
}
|
||||
|
||||
GridFunction * DiffusionSolver::GetFEMSolution()
|
||||
@@ -560,6 +718,8 @@ DiffusionSolver::~DiffusionSolver()
|
||||
#endif
|
||||
delete fec; fec = nullptr;
|
||||
delete b;
|
||||
A.Clear();
|
||||
delete a;
|
||||
}
|
||||
|
||||
|
||||
|
||||
+11
-60
@@ -4,8 +4,8 @@
|
||||
//
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex37p -alpha 10 -pv
|
||||
// mpirun -np 4 ex37p -lambda 0.1 -mu 0.1
|
||||
// mpirun -np 4 ex37p -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
|
||||
// mpirun -np 4 ex37p -lambda 0.1 -mu 0.1 -growth 1
|
||||
// mpirun -np 4 ex37p -o 2 -alpha 10.0 -mi 50 -vf 0.4 -ntol 1e-5 -growth 1.5
|
||||
// mpirun -np 4 ex37p -r 6 -o 2 -alpha 10.0 -epsilon 0.02 -mi 50 -ntol 1e-5
|
||||
//
|
||||
// Description: This example code demonstrates the use of MFEM to solve a
|
||||
@@ -54,61 +54,6 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
/**
|
||||
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
|
||||
* ∫_Ω ρ dx = θ vol(Ω) as follows:
|
||||
*
|
||||
* 1. Compute the root of the R → R function
|
||||
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
|
||||
* 2. Set ψ ← ψ + c.
|
||||
*
|
||||
* @param psi a GridFunction to be updated
|
||||
* @param target_volume θ vol(Ω)
|
||||
* @param tol Newton iteration tolerance
|
||||
* @param max_its Newton maximum iteration number
|
||||
* @return real_t Final volume, ∫_Ω sigmoid(ψ)
|
||||
*/
|
||||
real_t proj(ParGridFunction &psi, real_t target_volume, real_t tol=1e-12,
|
||||
int max_its=10)
|
||||
{
|
||||
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
|
||||
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
|
||||
|
||||
ParLinearForm int_sigmoid_psi(psi.ParFESpace());
|
||||
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
|
||||
ParLinearForm int_der_sigmoid_psi(psi.ParFESpace());
|
||||
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
|
||||
der_sigmoid_psi));
|
||||
bool done = false;
|
||||
for (int k=0; k<max_its; k++) // Newton iteration
|
||||
{
|
||||
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
|
||||
real_t f = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &f, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
f -= target_volume;
|
||||
|
||||
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
|
||||
real_t df = int_der_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &df, 1, MPITypeMap<real_t>::mpi_type,
|
||||
MPI_SUM, MPI_COMM_WORLD);
|
||||
|
||||
const real_t dc = -f/df;
|
||||
psi += dc;
|
||||
if (abs(dc) < tol) { done = true; break; }
|
||||
}
|
||||
if (!done)
|
||||
{
|
||||
mfem_warning("Projection reached maximum iteration without converging. "
|
||||
"Result may not be accurate.");
|
||||
}
|
||||
int_sigmoid_psi.Assemble();
|
||||
real_t material_volume = int_sigmoid_psi.Sum();
|
||||
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1,
|
||||
MPITypeMap<real_t>::mpi_type, MPI_SUM, MPI_COMM_WORLD);
|
||||
return material_volume;
|
||||
}
|
||||
|
||||
/*
|
||||
* ---------------------------------------------------------------
|
||||
* ALGORITHM PREAMBLE
|
||||
@@ -193,10 +138,11 @@ int main(int argc, char *argv[])
|
||||
int ref_levels = 5;
|
||||
int order = 2;
|
||||
real_t alpha = 1.0;
|
||||
real_t growth = 2;
|
||||
real_t epsilon = 0.01;
|
||||
real_t vol_fraction = 0.5;
|
||||
int max_it = 1e3;
|
||||
real_t itol = 1e-1;
|
||||
real_t itol = 1e-2;
|
||||
real_t ntol = 1e-4;
|
||||
real_t rho_min = 1e-6;
|
||||
real_t lambda = 1.0;
|
||||
@@ -211,6 +157,8 @@ int main(int argc, char *argv[])
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
|
||||
"Step length for gradient descent.");
|
||||
args.AddOption(&growth, "-growth", "--alpha-growth-rate",
|
||||
"Growth rate of step length for gradient descent.");
|
||||
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
|
||||
"Length scale for ρ.");
|
||||
args.AddOption(&max_it, "-mi", "--max-it",
|
||||
@@ -359,6 +307,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
|
||||
FilterSolver->SetupFEM();
|
||||
FilterSolver->AssembleDiffusionBilinear();
|
||||
|
||||
ParBilinearForm mass(&control_fes);
|
||||
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
|
||||
@@ -412,7 +361,7 @@ int main(int argc, char *argv[])
|
||||
// 11. Iterate:
|
||||
for (int k = 1; k <= max_it; k++)
|
||||
{
|
||||
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
|
||||
if (k > 1) { alpha = std::pow((real_t) k,growth); }
|
||||
|
||||
if (myid == 0)
|
||||
{
|
||||
@@ -452,7 +401,9 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Step 5 - Update design variable ψ ← proj(ψ - αG)
|
||||
psi.Add(-alpha, grad);
|
||||
const real_t material_volume = proj(psi, target_volume);
|
||||
ParGridFunction alpha_grad(grad);
|
||||
alpha_grad *= alpha;
|
||||
const real_t material_volume = proj(psi, alpha_grad, target_volume);
|
||||
|
||||
// Compute ||ρ - ρ_old|| in control fes.
|
||||
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
|
||||
|
||||
@@ -76,4 +76,4 @@ clean-build:
|
||||
rm -rf *.dSYM *.TVD.*breakpoints
|
||||
|
||||
clean-exec:
|
||||
@rm -f refined.mesh sol.gf
|
||||
@rm -f refined.mesh sol.gf mesh.* sol.*
|
||||
|
||||
+7
-2
@@ -71,6 +71,7 @@ endif
|
||||
|
||||
SUBDIRS_ALL = $(addsuffix /all,$(SUBDIRS))
|
||||
SUBDIRS_TEST = $(addsuffix /test,$(SUBDIRS))
|
||||
SUBDIRS_TEST_NOCLEAN = $(addsuffix /test-noclean,$(SUBDIRS))
|
||||
SUBDIRS_CLEAN = $(addsuffix /clean,$(SUBDIRS))
|
||||
SUBDIRS_TPRINT = $(addsuffix /test-print,$(SUBDIRS))
|
||||
|
||||
@@ -87,8 +88,9 @@ SUBDIRS_TPRINT = $(addsuffix /test-print,$(SUBDIRS))
|
||||
|
||||
all: $(EXAMPLES) $(SUBDIRS_ALL)
|
||||
|
||||
.PHONY: $(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_CLEAN) $(SUBDIRS_TPRINT)
|
||||
$(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_CLEAN):
|
||||
.PHONY: $(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_TEST_NOCLEAN) \
|
||||
$(SUBDIRS_CLEAN) $(SUBDIRS_TPRINT)
|
||||
$(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_TEST_NOCLEAN) $(SUBDIRS_CLEAN):
|
||||
$(MAKE) -C $(@D) $(@F)
|
||||
$(SUBDIRS_TPRINT):
|
||||
@$(MAKE) -C $(@D) $(@F)
|
||||
@@ -107,6 +109,7 @@ endif
|
||||
MFEM_TESTS = EXAMPLES
|
||||
include $(MFEM_TEST_MK)
|
||||
test: $(SUBDIRS_TEST)
|
||||
test-noclean: $(SUBDIRS_TEST_NOCLEAN)
|
||||
test-print: $(SUBDIRS_TPRINT)
|
||||
|
||||
# Testing: Parallel vs. serial runs
|
||||
@@ -157,6 +160,8 @@ ex37-test-seq: ex37
|
||||
@$(call mfem-test,$<,, Serial example,-mi 3)
|
||||
ex37p-test-par: ex37p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-mi 3)
|
||||
ex39-test-seq: ex39
|
||||
@$(call mfem-test,$<,, Serial example,-m ../data/compass.mesh)
|
||||
ex41-test-seq: ex41
|
||||
@$(call mfem-test,$<,, Serial example,-tf 1.0)
|
||||
ex41p-test-par: ex41p
|
||||
|
||||
@@ -57,6 +57,8 @@ set(SRCS
|
||||
integ/lininteg_domain_grad.cpp
|
||||
integ/lininteg_domain_vectorfe.cpp
|
||||
integ/nonlininteg_vecconvection_pa.cpp
|
||||
integ/nonlininteg_vecconvection_pa_diag.cpp
|
||||
integ/nonlininteg_vecconvection_pa_grad.cpp
|
||||
integ/nonlininteg_vecconvection_mf.cpp
|
||||
coefficient.cpp
|
||||
complex_fem.cpp
|
||||
@@ -171,8 +173,12 @@ set(SRCS
|
||||
tmop_tools.cpp
|
||||
tmop_amr.cpp
|
||||
gslib.cpp
|
||||
gslib/findptsedge_local_2.cpp
|
||||
gslib/findptsedge_local_3.cpp
|
||||
gslib/findptssurf_local_3.cpp
|
||||
gslib/findpts_local_2.cpp
|
||||
gslib/findpts_local_3.cpp
|
||||
gslib/interpolate_local_1.cpp
|
||||
gslib/interpolate_local_2.cpp
|
||||
gslib/interpolate_local_3.cpp
|
||||
transfer.cpp
|
||||
|
||||
@@ -729,7 +729,8 @@ void BilinearForm::Assemble(int skip_zeros)
|
||||
tr = mesh -> GetBdrFaceTransformations (i);
|
||||
if (tr != NULL)
|
||||
{
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs);
|
||||
mfem::DofTransformation doftrans;
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs, doftrans);
|
||||
fe1 = fes -> GetFE (tr -> Elem1No);
|
||||
// The fe2 object is really a dummy and not used on the boundaries,
|
||||
// but we can't dereference a NULL pointer, and we don't want to
|
||||
@@ -743,6 +744,7 @@ void BilinearForm::Assemble(int skip_zeros)
|
||||
|
||||
boundary_face_integs[k] -> AssembleFaceMatrix (*fe1, *fe2, *tr,
|
||||
elemmat);
|
||||
doftrans.TransformDual(elemmat);
|
||||
mat -> AddSubMatrix (vdofs, vdofs, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
@@ -1723,6 +1725,7 @@ void MixedBilinearForm::Assemble(int skip_zeros)
|
||||
}
|
||||
}
|
||||
|
||||
DofTransformation dom_dof_trans, ran_dof_trans;
|
||||
for (int i = 0; i < trial_fes -> GetNBE(); i++)
|
||||
{
|
||||
const int bdr_attr = mesh->GetBdrAttribute(i);
|
||||
@@ -1731,8 +1734,8 @@ void MixedBilinearForm::Assemble(int skip_zeros)
|
||||
ftr = mesh -> GetBdrFaceTransformations (i);
|
||||
if (ftr != NULL)
|
||||
{
|
||||
trial_fes->GetElementVDofs(ftr->Elem1No, trial_vdofs);
|
||||
test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs);
|
||||
trial_fes->GetElementVDofs(ftr->Elem1No, trial_vdofs, dom_dof_trans);
|
||||
test_fes->GetElementVDofs(ftr->Elem1No, test_vdofs, ran_dof_trans);
|
||||
trial_fe1 = trial_fes->GetFE(ftr->Elem1No);
|
||||
test_fe1 = test_fes->GetFE(ftr->Elem1No);
|
||||
// The test_fe2 object is really a dummy and not used on the
|
||||
@@ -1748,6 +1751,7 @@ void MixedBilinearForm::Assemble(int skip_zeros)
|
||||
boundary_face_integs[k]->AssembleFaceMatrix(*trial_fe1, *test_fe1, *trial_fe2,
|
||||
*test_fe2,
|
||||
*ftr, elemmat);
|
||||
TransformDual(ran_dof_trans, dom_dof_trans, elemmat);
|
||||
mat->AddSubMatrix(test_vdofs, trial_vdofs, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
|
||||
+28
-2
@@ -2651,14 +2651,22 @@ public:
|
||||
void AddMultMF(const Vector &x, Vector &y) const override;
|
||||
bool SupportsCeed() const override { return DeviceCanUseCeed(); }
|
||||
|
||||
// PA AddMultPA kernels
|
||||
using VectorMassAddMultPAType =
|
||||
void(*)(const int, const int,
|
||||
const Array<real_t>&, const Vector&,
|
||||
const Vector&, Vector&, const int, const int);
|
||||
|
||||
MFEM_REGISTER_KERNELS(VectorMassAddMultPA,
|
||||
VectorMassAddMultPAType,
|
||||
(int, int, int));
|
||||
|
||||
// PA DiagonalPA kernels
|
||||
using VectorMassAssembleDiagonalPAType =
|
||||
void(*)(const int, const int, const int,
|
||||
const real_t*, const real_t*, real_t*);
|
||||
MFEM_REGISTER_KERNELS(VectorMassAssembleDiagonalPA,
|
||||
VectorMassAssembleDiagonalPAType,
|
||||
(int /*dim*/, int /*q1d*/));
|
||||
};
|
||||
|
||||
|
||||
@@ -2710,7 +2718,7 @@ public:
|
||||
|
||||
|
||||
/** Integrator for $(-Q u, \nabla v)$ for Nedelec ($u$) and $H^1$ ($v$) elements.
|
||||
This is equivalent to a weak divergence of the $H(curl$ basis functions. */
|
||||
This is equivalent to a weak divergence of the $H(curl)$ basis functions. */
|
||||
class VectorFEWeakDivergenceIntegrator: public BilinearFormIntegrator
|
||||
{
|
||||
protected:
|
||||
@@ -3060,6 +3068,24 @@ public:
|
||||
void AddMultPA(const Vector &x, Vector &y) const override;
|
||||
void AddMultTransposePA(const Vector &x, Vector &y) const override;
|
||||
|
||||
using VectorDivergenceAddMultPAType =
|
||||
void (*)(const int ne,
|
||||
const Array<real_t> &b, const Array<real_t> &g, const Array<real_t> &bt,
|
||||
const Vector &op, const Vector &x, Vector &y,
|
||||
const int tr_d1d, const int te_d1d, const int q1d);
|
||||
MFEM_REGISTER_KERNELS(VectorDivergenceAddMultPA,
|
||||
VectorDivergenceAddMultPAType,
|
||||
(int, int, int, int));
|
||||
|
||||
using VectorDivergenceAddMultTransposePAType =
|
||||
void (*)(const int ne,
|
||||
const Array<real_t> &bt, const Array<real_t> >, const Array<real_t> &b,
|
||||
const Vector &q, const Vector &x, Vector &y,
|
||||
const int tr_d1d, const int te_d1d, const int q1d);
|
||||
MFEM_REGISTER_KERNELS(VectorDivergenceAddMultTransposePA,
|
||||
VectorDivergenceAddMultTransposePAType,
|
||||
(int, int, int, int));
|
||||
|
||||
static const IntegrationRule &GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
const ElementTransformation &Trans);
|
||||
|
||||
@@ -52,6 +52,9 @@ public:
|
||||
/// Get the time for time dependent coefficients
|
||||
real_t GetTime() { return time; }
|
||||
|
||||
/// Returns dimension of the vector.
|
||||
int GetVDim() { return 1; }
|
||||
|
||||
/** @brief Evaluate the coefficient in the element described by @a T at the
|
||||
point @a ip. */
|
||||
/** @note When this method is called, the caller must make sure that the
|
||||
|
||||
+13
-26
@@ -830,15 +830,9 @@ ParComplexGridFunction::ParComplexGridFunction(ParMesh *m, std::istream &input)
|
||||
int vsize = pfes->GetVSize();
|
||||
Vector::Load(input, 2*vsize);
|
||||
|
||||
real_t *data_ = const_cast<real_t*>(HostRead());
|
||||
for (int i = 0; i < vsize; i++)
|
||||
{
|
||||
if (pfes->GetDofSign(i) < 0)
|
||||
{
|
||||
data_[i] = -data_[i];
|
||||
data_[i+vsize] = -data_[i+vsize];
|
||||
}
|
||||
}
|
||||
real_t *h_data = HostReadWrite();
|
||||
pfes->ApplyDofSigns(h_data);
|
||||
pfes->ApplyDofSigns(h_data + vsize);
|
||||
|
||||
|
||||
// if the mesh is a legacy (v1.1) NC mesh, it has old vertex ordering
|
||||
@@ -1051,15 +1045,14 @@ void ParComplexGridFunction::Save(std::ostream &os) const
|
||||
os << '\n';
|
||||
|
||||
int vsize = pfes->GetVSize();
|
||||
real_t *data_ = const_cast<real_t*>(HostRead());
|
||||
for (int i = 0; i < vsize; i++)
|
||||
{
|
||||
if (pfes->GetDofSign(i) < 0)
|
||||
{
|
||||
data_[i] = -data_[i];
|
||||
data_[i+vsize] = -data_[i+vsize];
|
||||
}
|
||||
}
|
||||
// We use const_cast + HostRead (instead of HostReadWrite) because we only
|
||||
// need to change the host data temporarily and this way we do not invalidate
|
||||
// the data if it is on device. If we use HostReadWrite here, later calls to
|
||||
// Read or ReadWrite will need to copy the data from host to device. With the
|
||||
// approach used here, the host-to-device copy is avoided.
|
||||
real_t *h_data = const_cast<real_t*>(HostRead());
|
||||
pfes->ApplyDofSigns(h_data);
|
||||
pfes->ApplyDofSigns(h_data + vsize);
|
||||
|
||||
if (pfes->GetOrdering() == Ordering::byNODES)
|
||||
{
|
||||
@@ -1070,14 +1063,8 @@ void ParComplexGridFunction::Save(std::ostream &os) const
|
||||
Vector::Print(os, pfes->GetVDim());
|
||||
}
|
||||
|
||||
for (int i = 0; i < vsize; i++)
|
||||
{
|
||||
if (pfes->GetDofSign(i) < 0)
|
||||
{
|
||||
data_[i] = -data_[i];
|
||||
data_[i+vsize] = -data_[i+vsize];
|
||||
}
|
||||
}
|
||||
pfes->ApplyDofSigns(h_data);
|
||||
pfes->ApplyDofSigns(h_data + vsize);
|
||||
|
||||
os.flush();
|
||||
}
|
||||
|
||||
@@ -114,6 +114,10 @@ void ConduitDataCollection::Save()
|
||||
n_mesh["fields"][name]);
|
||||
}
|
||||
|
||||
// TODO: in parallel, we need to call ParFiniteElementSpace::ApplyDofSigns
|
||||
// for all ParGridFunction objects before and after saving, see
|
||||
// ParGridFunction::Save.
|
||||
|
||||
// save mesh data
|
||||
SaveMeshAndFields(myid,
|
||||
n_mesh,
|
||||
|
||||
+18
-5
@@ -492,6 +492,8 @@ void VisItDataCollection::SaveRootFile()
|
||||
to_padded_string(cycle, pad_digits_cycle) +
|
||||
".mfem_root";
|
||||
std::ofstream root_file(root_name);
|
||||
MFEM_VERIFY(root_file.is_open(),
|
||||
"Failed to open ofstream " << root_name);
|
||||
root_file << GetVisItRootString();
|
||||
if (!root_file)
|
||||
{
|
||||
@@ -977,7 +979,10 @@ void ParaViewDataCollection::Save()
|
||||
// Save the local part of the mesh and grid functions fields to the local
|
||||
// VTU file. Also save coefficient fields.
|
||||
{
|
||||
std::ofstream os(vtu_prefix + GenerateVTUFileName("proc", myid));
|
||||
std::string os_str = vtu_prefix + GenerateVTUFileName("proc", myid);
|
||||
std::ofstream os(os_str);
|
||||
MFEM_VERIFY(os.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
os.precision(precision);
|
||||
SaveDataVTU(os, levels_of_detail);
|
||||
}
|
||||
@@ -989,7 +994,10 @@ void ParaViewDataCollection::Save()
|
||||
"QuadratureFunction output is not supported for "
|
||||
"ParaViewDataCollection on domain boundary!");
|
||||
const std::string &field_name = qfield.first;
|
||||
std::ofstream os(vtu_prefix + GenerateVTUFileName(field_name, myid));
|
||||
std::string os_str = vtu_prefix + GenerateVTUFileName(field_name, myid);
|
||||
std::ofstream os(os_str);
|
||||
MFEM_VERIFY(os.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
qfield.second->SaveVTU(os, pv_data_format, GetCompressionLevel(), field_name);
|
||||
}
|
||||
|
||||
@@ -1000,7 +1008,10 @@ void ParaViewDataCollection::Save()
|
||||
{
|
||||
// Create the main PVTU file
|
||||
{
|
||||
std::ofstream pvtu_out(vtu_prefix + GeneratePVTUFileName("data"));
|
||||
std::string os_str = vtu_prefix + GeneratePVTUFileName("data");
|
||||
std::ofstream pvtu_out(os_str);
|
||||
MFEM_VERIFY(pvtu_out.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
WritePVTUHeader(pvtu_out);
|
||||
|
||||
// Grid function fields and coefficient fields
|
||||
@@ -1055,8 +1066,10 @@ void ParaViewDataCollection::Save()
|
||||
const std::string &q_field_name = q_field.first;
|
||||
std::string q_fname = GeneratePVTUPath() + "/"
|
||||
+ GeneratePVTUFileName(q_field_name);
|
||||
|
||||
std::ofstream pvtu_out(col_path + "/" + q_fname);
|
||||
std::string os_str = col_path + "/" + q_fname;
|
||||
std::ofstream pvtu_out(os_str);
|
||||
MFEM_VERIFY(pvtu_out.is_open(),
|
||||
"Failed to open ofstream " << os_str);
|
||||
WritePVTUHeader(pvtu_out);
|
||||
int vec_dim = q_field.second->GetVDim();
|
||||
pvtu_out << "<PPointData>\n";
|
||||
|
||||
@@ -57,7 +57,7 @@ void DGMassApply(const int e,
|
||||
}
|
||||
else if (DIM == 3)
|
||||
{
|
||||
SmemPAMassApply3D_Element<TD1D,TQ1D,ACCUM>(e, NE, B, pa_data, x, y);
|
||||
SmemPAMassApply3D_Element<TD1D,TQ1D,NBZ,ACCUM>(e, NE, B, pa_data, x, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
|
||||
+6
-6
@@ -320,8 +320,8 @@ public:
|
||||
error estimation procedure where the flux averaging is replaced by a global
|
||||
L2 projection (requiring a mass matrix solve).
|
||||
|
||||
The required BilinearFormIntegrator must implement the methods
|
||||
ComputeElementFlux() and ComputeFluxEnergy().
|
||||
The required BilinearFormIntegrator must implement the method
|
||||
ComputeElementFlux().
|
||||
|
||||
Implemented for the parallel case only.
|
||||
*/
|
||||
@@ -357,8 +357,8 @@ protected:
|
||||
|
||||
public:
|
||||
/** @brief Construct a new L2ZienkiewiczZhuEstimator object.
|
||||
@param integ This BilinearFormIntegrator must implement the methods
|
||||
ComputeElementFlux() and ComputeFluxEnergy().
|
||||
@param integ This BilinearFormIntegrator must implement the method
|
||||
ComputeElementFlux().
|
||||
@param sol The solution field whose error is to be estimated.
|
||||
@param flux_fes The L2ZienkiewiczZhuEstimator assumes ownership of this
|
||||
FiniteElementSpace and will call its Update() method when
|
||||
@@ -382,8 +382,8 @@ public:
|
||||
{ }
|
||||
|
||||
/** @brief Construct a new L2ZienkiewiczZhuEstimator object.
|
||||
@param integ This BilinearFormIntegrator must implement the methods
|
||||
ComputeElementFlux() and ComputeFluxEnergy().
|
||||
@param integ This BilinearFormIntegrator must implement the method
|
||||
ComputeElementFlux().
|
||||
@param sol The solution field whose error is to be estimated.
|
||||
@param flux_fes The L2ZienkiewiczZhuEstimator does NOT assume ownership
|
||||
of this FiniteElementSpace; will call its Update() method
|
||||
|
||||
+3
-3
@@ -349,7 +349,7 @@ public:
|
||||
vector-valued finite elements, which is also the width of the
|
||||
DenseMatrix argument in
|
||||
CalcPhysVShape(ElementTransformation &Trans, DenseMatrix &shape). */
|
||||
int GetPhysRangeDim(int /* space_dim */) const { return vdim; }
|
||||
virtual int GetPhysRangeDim(int /* space_dim */) const { return vdim; }
|
||||
|
||||
/** Returns the dimension of the curl for vector-valued finite elements,
|
||||
which is also the width of the DenseMatrix argument in
|
||||
@@ -360,7 +360,7 @@ public:
|
||||
finite elements, which is also the width of the DenseMatrix argument in
|
||||
CalcPhysCurlShape(ElementTransformation &Trans, DenseMatrix &curl_shape).
|
||||
*/
|
||||
int GetPhysCurlDim(int /* space_dim */) const { return cdim; }
|
||||
virtual int GetPhysCurlDim(int /* space_dim */) const { return cdim; }
|
||||
|
||||
/// Returns the Geometry::Type of the reference element.
|
||||
Geometry::Type GetGeomType() const { return geom_type; }
|
||||
@@ -1017,7 +1017,7 @@ public:
|
||||
VectorFiniteElement(int D, Geometry::Type G, int Do, int O, int M,
|
||||
int F = FunctionSpace::Pk);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const { return space_dim; }
|
||||
int GetPhysRangeDim(int space_dim) const override { return space_dim; }
|
||||
};
|
||||
|
||||
/// @brief Class for computing 1D special polynomials and their associated basis
|
||||
|
||||
+4
-4
@@ -663,8 +663,8 @@ public:
|
||||
const int cb_type = BasisType::GaussLobatto,
|
||||
const int ob_type = BasisType::GaussLegendre);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const { return 2; }
|
||||
int GetPhysCurlDim(int space_dim) const { return 1; }
|
||||
int GetPhysRangeDim(int space_dim) const override { return 2; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 1; }
|
||||
|
||||
void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const override;
|
||||
@@ -708,8 +708,8 @@ private:
|
||||
DenseMatrix &I) const;
|
||||
|
||||
public:
|
||||
int GetPhysRangeDim(int space_dim) const { return 3; }
|
||||
int GetPhysCurlDim(int space_dim) const { return 3; }
|
||||
int GetPhysRangeDim(int space_dim) const override { return 3; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 3; }
|
||||
|
||||
using FiniteElement::CalcVShape;
|
||||
using FiniteElement::CalcPhysCurlShape;
|
||||
|
||||
+4
-4
@@ -510,8 +510,8 @@ public:
|
||||
RT_R2D_SegmentElement(const int p,
|
||||
const int ob_type = BasisType::GaussLegendre);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const { return 2; }
|
||||
int GetPhysCurlDim(int space_dim) const { return 0; }
|
||||
int GetPhysRangeDim(int space_dim) const override { return 2; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 0; }
|
||||
|
||||
void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const override;
|
||||
@@ -550,8 +550,8 @@ private:
|
||||
DenseMatrix &I) const;
|
||||
|
||||
public:
|
||||
int GetPhysRangeDim(int space_dim) const { return 3; }
|
||||
int GetPhysCurlDim(int space_dim) const { return 0; }
|
||||
int GetPhysRangeDim(int space_dim) const override { return 3; }
|
||||
int GetPhysCurlDim(int space_dim) const override { return 0; }
|
||||
|
||||
using FiniteElement::CalcVShape;
|
||||
|
||||
|
||||
@@ -3934,6 +3934,16 @@ const FiniteElement *FiniteElementSpace::GetBE(int i) const
|
||||
return BE;
|
||||
}
|
||||
|
||||
const FiniteElement *FiniteElementSpace::GetTypicalBE() const
|
||||
{
|
||||
if (mesh->GetNBE() > 0) { return GetBE(0); }
|
||||
|
||||
Geometry::Type geom = mesh->GetTypicalFaceGeometry();
|
||||
const FiniteElement *be = fec->FiniteElementForGeometry(geom);
|
||||
MFEM_VERIFY(be != nullptr, "Could not determine a typical BE!");
|
||||
return be;
|
||||
}
|
||||
|
||||
const FiniteElement *FiniteElementSpace::GetFaceElement(int i) const
|
||||
{
|
||||
MFEM_VERIFY(!IsVariableOrder(), "not implemented");
|
||||
@@ -3964,6 +3974,11 @@ const FiniteElement *FiniteElementSpace::GetFaceElement(int i) const
|
||||
return fe;
|
||||
}
|
||||
|
||||
const FiniteElement *FiniteElementSpace::GetTypicalFaceElement() const
|
||||
{
|
||||
return fec->FiniteElementForGeometry(mesh->GetTypicalFaceGeometry());
|
||||
}
|
||||
|
||||
const FiniteElement *FiniteElementSpace::GetEdgeElement(int i,
|
||||
int variant) const
|
||||
{
|
||||
|
||||
+13
-1
@@ -839,7 +839,7 @@ public:
|
||||
Note: For vector-valued elements, the results pads up the range dimension
|
||||
to the spatial dimension. E.g., consider a stack of 5 vector-valued
|
||||
elements each representing 2D vectors, living in a 3 dimensional space.
|
||||
Then this fucntion would give 15, not 10.
|
||||
Then this function would give 15, not 10.
|
||||
*/
|
||||
int GetVectorDim() const;
|
||||
|
||||
@@ -1323,12 +1323,24 @@ public:
|
||||
associated with i'th boundary face in the mesh object. */
|
||||
const FiniteElement *GetBE(int i) const;
|
||||
|
||||
/// @brief Return a "typical" boundary element.
|
||||
///
|
||||
/// This can be used in situations where the local mesh partition may be
|
||||
/// empty.
|
||||
const FiniteElement *GetTypicalBE() const;
|
||||
|
||||
/** @brief Returns pointer to the FiniteElement in the FiniteElementCollection
|
||||
associated with i'th face in the mesh object. Faces in this case refer
|
||||
to the MESHDIM-1 primitive so in 2D they are segments and in 1D they are
|
||||
points.*/
|
||||
const FiniteElement *GetFaceElement(int i) const;
|
||||
|
||||
/// @brief Return a "typical" face element.
|
||||
///
|
||||
/// This can be used in situations where the local mesh partition may be
|
||||
/// empty.
|
||||
const FiniteElement *GetTypicalFaceElement() const;
|
||||
|
||||
/** @brief Returns pointer to the FiniteElement in the FiniteElementCollection
|
||||
associated with i'th edge in the mesh object. */
|
||||
const FiniteElement *GetEdgeElement(int i, int variant = 0) const;
|
||||
|
||||
+84
-74
@@ -345,27 +345,6 @@ void GridFunction::ComputeFlux(BilinearFormIntegrator &blfi,
|
||||
}
|
||||
}
|
||||
|
||||
int GridFunction::VectorDim() const
|
||||
{
|
||||
const FiniteElement *fe = fes->GetTypicalFE();
|
||||
if (!fe || fe->GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
return fes->GetVDim();
|
||||
}
|
||||
return fes->GetVDim()*std::max(fes->GetMesh()->SpaceDimension(),
|
||||
fe->GetRangeDim());
|
||||
}
|
||||
|
||||
int GridFunction::CurlDim() const
|
||||
{
|
||||
const FiniteElement *fe = fes->GetTypicalFE();
|
||||
if (!fe || fe->GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
return 2 * fes->GetMesh()->SpaceDimension() - 3;
|
||||
}
|
||||
return fes->GetVDim()*fe->GetCurlDim();
|
||||
}
|
||||
|
||||
void GridFunction::GetTrueDofs(Vector &tv) const
|
||||
{
|
||||
const SparseMatrix *R = fes->GetRestrictionMatrix();
|
||||
@@ -2050,6 +2029,18 @@ void GridFunction::AccumulateAndCountBdrValues(
|
||||
Coefficient *coeff[], VectorCoefficient *vcoeff, const Array<int> &attr,
|
||||
Array<int> &values_counter)
|
||||
{
|
||||
if (vcoeff)
|
||||
{
|
||||
MFEM_VERIFY(fes->GetVDim() == vcoeff->GetVDim(),
|
||||
"vcoeff vdim != fes VDim");
|
||||
MFEM_VERIFY(fes->GetTypicalBE()->GetMapType() == FiniteElement::VALUE &&
|
||||
fes->GetTypicalBE()->GetRangeType() ==
|
||||
FiniteElement::SCALAR,
|
||||
"Can only call ProjectBdrCoefficient on scalar value-type "
|
||||
"boundary elements. "
|
||||
"Did you intended to call ProjectBdrCoefficientNormal or "
|
||||
"ProjectBdrCoefficientTangent for vector finite elements?");
|
||||
}
|
||||
Array<int> vdofs;
|
||||
Vector vc;
|
||||
|
||||
@@ -2202,6 +2193,9 @@ void GridFunction::AccumulateAndCountBdrTangentValues(
|
||||
VectorCoefficient &vcoeff, const Array<int> &bdr_attr,
|
||||
Array<int> &values_counter)
|
||||
{
|
||||
MFEM_VERIFY(fes->GetTypicalBE()->GetPhysRangeDim(
|
||||
fes->GetMesh()->SpaceDimension()) == vcoeff.GetVDim(),
|
||||
"vcoeff vdim != PhysRangeDim");
|
||||
const FiniteElement *fe;
|
||||
ElementTransformation *T;
|
||||
Array<int> dofs;
|
||||
@@ -2355,6 +2349,9 @@ void GridFunction::ProjectDeltaCoefficient(DeltaCoefficient &delta_coeff,
|
||||
|
||||
void GridFunction::ProjectCoefficient(Coefficient &coeff, ProjectType type)
|
||||
{
|
||||
MFEM_VERIFY(
|
||||
VectorDim() == 1,
|
||||
"Cannot project scalar Coefficient onto vector GridFunction");
|
||||
DeltaCoefficient *delta_c = dynamic_cast<DeltaCoefficient *>(&coeff);
|
||||
DofTransformation doftrans;
|
||||
Array<int> vdofs;
|
||||
@@ -2630,6 +2627,7 @@ void GridFunction::ProjectCoefficient(
|
||||
void GridFunction::ProjectCoefficient(VectorCoefficient &vcoeff,
|
||||
ProjectType type)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == vcoeff.GetVDim(), "vcoeff vdim != VectorDim()");
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
DofTransformation doftrans;
|
||||
@@ -2945,6 +2943,7 @@ void GridFunction::ProjectCoefficientElementL2(VectorCoefficient &vcoeff)
|
||||
void GridFunction::ProjectCoefficient(
|
||||
VectorCoefficient &vcoeff, Array<int> &dofs)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == vcoeff.GetVDim(), "vcoeff vdim != VectorDim()");
|
||||
int el = -1;
|
||||
ElementTransformation *T = NULL;
|
||||
const FiniteElement *fe = NULL;
|
||||
@@ -2974,6 +2973,7 @@ void GridFunction::ProjectCoefficient(
|
||||
|
||||
void GridFunction::ProjectCoefficient(VectorCoefficient &vcoeff, int attribute)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == vcoeff.GetVDim(), "vcoeff vdim != VectorDim()");
|
||||
int i;
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
@@ -3030,9 +3030,14 @@ void GridFunction::ProjectCoefficient(Coefficient *coeff[])
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff,
|
||||
Array<int> &dof_attr)
|
||||
void GridFunction::ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff, Array<int> &dof_attr)
|
||||
{
|
||||
std::visit([&](auto* c)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == c->GetVDim(), "coeff vdim != VectorDim()");
|
||||
}, coeff);
|
||||
|
||||
Array<int> vdofs;
|
||||
Vector vals;
|
||||
|
||||
@@ -3046,7 +3051,10 @@ void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff,
|
||||
{
|
||||
fes->GetElementVDofs(i, vdofs);
|
||||
vals.SetSize(vdofs.Size());
|
||||
fes->GetFE(i)->Project(coeff, *fes->GetElementTransformation(i), vals);
|
||||
std::visit([&](auto* c)
|
||||
{
|
||||
fes->GetFE(i)->Project(*c, *fes->GetElementTransformation(i), vals);
|
||||
}, coeff);
|
||||
|
||||
// the values in shared dofs are determined from the element with maximal
|
||||
// attribute
|
||||
@@ -3062,17 +3070,15 @@ void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff,
|
||||
}
|
||||
}
|
||||
|
||||
void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff)
|
||||
{
|
||||
Array<int> dof_attr;
|
||||
ProjectDiscCoefficient(coeff, dof_attr);
|
||||
}
|
||||
|
||||
void GridFunction::ProjectDiscCoefficient(Coefficient &coeff, AvgType type)
|
||||
{
|
||||
// Harmonic (x1 ... xn) = [ (1/x1 + ... + 1/xn) / n ]^-1.
|
||||
// Arithmetic(x1 ... xn) = (x1 + ... + xn) / n.
|
||||
|
||||
MFEM_VERIFY(
|
||||
VectorDim() == 1,
|
||||
"Cannot project a scalar coefficient onto a vector GridFunction");
|
||||
|
||||
Array<int> zones_per_vdof;
|
||||
AccumulateAndCountZones(coeff, type, zones_per_vdof);
|
||||
|
||||
@@ -3082,6 +3088,7 @@ void GridFunction::ProjectDiscCoefficient(Coefficient &coeff, AvgType type)
|
||||
void GridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff,
|
||||
AvgType type)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == coeff.GetVDim(), "coeff vdim != VectorDim()");
|
||||
Array<int> zones_per_vdof;
|
||||
AccumulateAndCountZones(coeff, type, zones_per_vdof);
|
||||
|
||||
@@ -3137,52 +3144,33 @@ void GridFunction::ProjectBdrCoefficient(Coefficient *coeff[],
|
||||
}
|
||||
|
||||
void GridFunction::ProjectBdrCoefficientNormal(
|
||||
VectorCoefficient &vcoeff, const Array<int> &bdr_attr)
|
||||
Coefficient *coeff, VectorCoefficient *vcoeff, const Array<int> &bdr_attr)
|
||||
{
|
||||
#if 0
|
||||
// implementation for the case when the face dofs are integrals of the
|
||||
// normal component.
|
||||
const FiniteElement *fe;
|
||||
ElementTransformation *T;
|
||||
Array<int> dofs;
|
||||
int dim = vcoeff.GetVDim();
|
||||
Vector vc(dim), nor(dim), lvec, shape;
|
||||
|
||||
for (int i = 0; i < fes->GetNBE(); i++)
|
||||
MFEM_VERIFY(fes->GetVDim() == 1, "fespace VDim != 1");
|
||||
MFEM_VERIFY(fes->GetTypicalBE()->GetRangeType() == FiniteElement::SCALAR &&
|
||||
fes->GetTypicalBE()->GetMapType() == FiniteElement::INTEGRAL,
|
||||
"Not an RT FE space!");
|
||||
if (vcoeff)
|
||||
{
|
||||
if (bdr_attr[fes->GetBdrAttribute(i)-1] == 0)
|
||||
{
|
||||
continue;
|
||||
}
|
||||
fe = fes->GetBE(i);
|
||||
T = fes->GetBdrElementTransformation(i);
|
||||
int intorder = 2*fe->GetOrder(); // !!!
|
||||
const IntegrationRule &ir = IntRules.Get(fe->GetGeomType(), intorder);
|
||||
int nd = fe->GetDof();
|
||||
lvec.SetSize(nd);
|
||||
shape.SetSize(nd);
|
||||
lvec = 0.0;
|
||||
for (int j = 0; j < ir.GetNPoints(); j++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir.IntPoint(j);
|
||||
T->SetIntPoint(&ip);
|
||||
vcoeff.Eval(vc, *T, ip);
|
||||
CalcOrtho(T->Jacobian(), nor);
|
||||
fe->CalcShape(ip, shape);
|
||||
lvec.Add(ip.weight * (vc * nor), shape);
|
||||
}
|
||||
fes->GetBdrElementDofs(i, dofs);
|
||||
SetSubVector(dofs, lvec);
|
||||
MFEM_VERIFY(vcoeff->GetVDim() == fes->GetMesh()->SpaceDimension(),
|
||||
"vcoeff vdim (" << vcoeff->GetVDim()
|
||||
<< ") != SpaceDimension ("
|
||||
<< fes->GetMesh()->SpaceDimension() << ")");
|
||||
}
|
||||
#else
|
||||
|
||||
// implementation for the case when the face dofs are scaled point
|
||||
// values of the normal component.
|
||||
const FiniteElement *fe;
|
||||
ElementTransformation *T;
|
||||
Array<int> dofs;
|
||||
int dim = vcoeff.GetVDim();
|
||||
Vector vc(dim), nor(dim), lvec;
|
||||
Vector vc, nor, lvec;
|
||||
DofTransformation doftrans;
|
||||
if (vcoeff)
|
||||
{
|
||||
const int dim = vcoeff->GetVDim();
|
||||
vc.SetSize(dim);
|
||||
nor.SetSize(dim);
|
||||
}
|
||||
|
||||
for (int i = 0; i < fes->GetNBE(); i++)
|
||||
{
|
||||
@@ -3198,15 +3186,22 @@ void GridFunction::ProjectBdrCoefficientNormal(
|
||||
{
|
||||
const IntegrationPoint &ip = ir.IntPoint(j);
|
||||
T->SetIntPoint(&ip);
|
||||
vcoeff.Eval(vc, *T, ip);
|
||||
CalcOrtho(T->Jacobian(), nor);
|
||||
lvec(j) = (vc * nor);
|
||||
if (coeff)
|
||||
{
|
||||
const real_t c = coeff->Eval(*T, ip);
|
||||
lvec(j) = c * T->Weight();
|
||||
}
|
||||
else if (vcoeff)
|
||||
{
|
||||
vcoeff->Eval(vc, *T, ip);
|
||||
CalcOrtho(T->Jacobian(), nor);
|
||||
lvec(j) = (vc * nor);
|
||||
}
|
||||
}
|
||||
fes->GetBdrElementDofs(i, dofs, doftrans);
|
||||
doftrans.TransformPrimal(lvec);
|
||||
SetSubVector(dofs, lvec);
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
void GridFunction::ProjectBdrCoefficientTangent(
|
||||
@@ -5007,6 +5002,14 @@ real_t ExtrudeCoefficient::Eval(ElementTransformation &T,
|
||||
return sol_in.Eval(*T_in, ip);
|
||||
}
|
||||
|
||||
void VectorExtrudeCoefficient::Eval(Vector &v, ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
{
|
||||
ElementTransformation *T_in =
|
||||
mesh_in->GetElementTransformation(T.ElementNo / n);
|
||||
T_in->SetIntPoint(&ip);
|
||||
sol_in.Eval(v, *T_in, ip);
|
||||
}
|
||||
|
||||
GridFunction *Extrude1DGridFunction(Mesh *mesh, Mesh *mesh2d,
|
||||
GridFunction *sol, const int ny)
|
||||
@@ -5057,10 +5060,17 @@ GridFunction *Extrude1DGridFunction(Mesh *mesh, Mesh *mesh2d,
|
||||
return NULL;
|
||||
}
|
||||
FiniteElementSpace *solfes2d;
|
||||
// assuming sol is scalar
|
||||
solfes2d = new FiniteElementSpace(mesh2d, solfec2d);
|
||||
const int vdim = sol->FESpace()->GetVDim();
|
||||
solfes2d = new FiniteElementSpace(mesh2d, solfec2d, vdim);
|
||||
sol2d = new GridFunction(solfes2d);
|
||||
sol2d->MakeOwner(solfec2d);
|
||||
if (vdim > 1)
|
||||
{
|
||||
VectorGridFunctionCoefficient vcsol(sol);
|
||||
VectorExtrudeCoefficient vc2d(mesh, vcsol, ny);
|
||||
sol2d->ProjectCoefficient(vc2d);
|
||||
}
|
||||
else
|
||||
{
|
||||
GridFunctionCoefficient csol(sol);
|
||||
ExtrudeCoefficient c2d(mesh, csol, ny);
|
||||
@@ -5758,4 +5768,4 @@ std::pair<real_t, real_t> GridFunction::EstimateFunctionMaximum(
|
||||
return std::make_pair(global_max_lower, global_max_upper);
|
||||
}
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
+93
-21
@@ -23,6 +23,7 @@
|
||||
#include <limits>
|
||||
#include <ostream>
|
||||
#include <string>
|
||||
#include <variant>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -79,10 +80,18 @@ protected:
|
||||
bool wcoef,
|
||||
int subdomain);
|
||||
|
||||
/** Project a discontinuous vector coefficient in a continuous space and
|
||||
return in dof_attr the maximal attribute of the elements containing each
|
||||
degree of freedom. */
|
||||
void ProjectDiscCoefficient(VectorCoefficient &coeff, Array<int> &dof_attr);
|
||||
/** @brief Project a discontinuous (vector) coefficient as a grid function on
|
||||
a continuous finite element space. Return in dof_attr the maximal
|
||||
attribute of the elements containing each degree of freedom. */
|
||||
virtual void ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff, Array<int> &dof_attr);
|
||||
|
||||
/** @brief Project a discontinuous (vector) coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
virtual void ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff)
|
||||
{ Array<int> dof_attr; ProjectDiscCoefficient(coeff, dof_attr); };
|
||||
|
||||
/** Helper function for ProjectCoefficientElementL2 */
|
||||
void ProjectCoefficientElementL2_(Coefficient &coeff, Vector &sol, Vector &Va);
|
||||
@@ -150,11 +159,13 @@ public:
|
||||
|
||||
FiniteElementCollection *OwnFEC() { return fec_owned; }
|
||||
|
||||
/// Shortcut for calling FiniteElementSpace::GetVectorDim() on the underlying #fes
|
||||
int VectorDim() const;
|
||||
/** @brief Shortcut for calling FiniteElementSpace::GetVectorDim() on the
|
||||
underlying #fes */
|
||||
int VectorDim() const { return fes->GetVectorDim(); }
|
||||
|
||||
/// Shortcut for calling FiniteElementSpace::GetCurlDim() on the underlying #fes
|
||||
int CurlDim() const;
|
||||
/** @brief Shortcut for calling FiniteElementSpace::GetCurlDim() on the
|
||||
underlying #fes */
|
||||
int CurlDim() const { return fes->GetCurlDim(); }
|
||||
|
||||
/// Read only access to the (optional) internal true-dof Vector.
|
||||
const Vector &GetTrueVector() const
|
||||
@@ -513,10 +524,17 @@ public:
|
||||
but using an array of scalar coefficients for each component. */
|
||||
void ProjectCoefficient(Coefficient *coeff[]);
|
||||
|
||||
/** @brief Project a discontinuous coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
virtual void ProjectDiscCoefficient(Coefficient &coeff)
|
||||
{ ProjectDiscCoefficient(&coeff); }
|
||||
|
||||
/** @brief Project a discontinuous vector coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
virtual void ProjectDiscCoefficient(VectorCoefficient &coeff);
|
||||
virtual void ProjectDiscCoefficient(VectorCoefficient &coeff)
|
||||
{ ProjectDiscCoefficient(&coeff); }
|
||||
|
||||
enum AvgType {ARITHMETIC, HARMONIC};
|
||||
/** @brief Projects a discontinuous coefficient so that the values in shared
|
||||
@@ -532,6 +550,9 @@ public:
|
||||
std::unique_ptr<GridFunction> ProlongateToMaxOrder() const;
|
||||
|
||||
protected:
|
||||
void ProjectBdrCoefficientNormal(Coefficient *coeff, VectorCoefficient *vcoeff,
|
||||
const Array<int> &attr);
|
||||
|
||||
/** @brief Accumulates (depending on @a type) the values of @a coeff at all
|
||||
shared vdofs and counts in how many zones each vdof appears. */
|
||||
void AccumulateAndCountZones(Coefficient &coeff, AvgType type,
|
||||
@@ -656,15 +677,26 @@ public:
|
||||
virtual void ProjectBdrCoefficient(Coefficient *coeff[],
|
||||
const Array<int> &attr);
|
||||
|
||||
/** Project the normal component of the given VectorCoefficient on
|
||||
the boundary. Only boundary attributes that are marked in
|
||||
'bdr_attr' are projected. Assumes RT-type VectorFE GridFunction. */
|
||||
/** @brief Project the normal component of the given VectorCoefficient on
|
||||
the boundary. */
|
||||
/** Only boundary attributes that are marked in @a bdr_attr are
|
||||
projected. Assumes RT-type vector finite element GridFunction. */
|
||||
void ProjectBdrCoefficientNormal(VectorCoefficient &vcoeff,
|
||||
const Array<int> &bdr_attr);
|
||||
const Array<int> &bdr_attr)
|
||||
{ ProjectBdrCoefficientNormal(NULL, &vcoeff, bdr_attr); }
|
||||
|
||||
/** @brief Project the given Coefficient in the normal direction on the
|
||||
boundary. */
|
||||
/** Only boundary attributes that are marked in @a bdr_attr are projected.
|
||||
Assumes RT-type vector finite element GridFunction. */
|
||||
void ProjectBdrCoefficientNormal(Coefficient &coeff,
|
||||
const Array<int> &bdr_attr)
|
||||
{ ProjectBdrCoefficientNormal(&coeff, NULL, bdr_attr); }
|
||||
|
||||
/** @brief Project the tangential components of the given VectorCoefficient
|
||||
on the boundary. Only boundary attributes that are marked in @a bdr_attr
|
||||
are projected. Assumes ND-type VectorFE GridFunction. */
|
||||
on the boundary. */
|
||||
/** Only boundary attributes that are marked in @a bdr_attr
|
||||
are projected. Assumes ND-type vector finite element GridFunction. */
|
||||
virtual void ProjectBdrCoefficientTangent(VectorCoefficient &vcoeff,
|
||||
const Array<int> &bdr_attr);
|
||||
|
||||
@@ -1735,8 +1767,8 @@ public:
|
||||
const int ref_factor=1, const int vdim=-1) const;
|
||||
|
||||
/// Computes the \ref PLBound for the gridfunction with number of control
|
||||
/// points based on \p ref_factor, and returns the bounds for each element
|
||||
/// ordered byNodes:
|
||||
/// points based on @a ref_factor, and returns the bounds for each element
|
||||
/// ordered byNODES:
|
||||
/// lower_{0,0}, lower_{1,0}, ..., lower_{ne-1,0},
|
||||
/// lower_{0,1}, ..., lower_{ne-1,vdim-1}. We also return the
|
||||
/// PLBound object used to compute the bounds.
|
||||
@@ -1770,7 +1802,7 @@ public:
|
||||
const int vdim = -1) const;
|
||||
|
||||
/// Compute bounds on the grid function for all the elements. The bounds
|
||||
/// are returned in @b lower and @b upper, ordered byNodes:
|
||||
/// are returned in @b lower and @b upper, ordered byNODES:
|
||||
/// lower_{0,0}, lower_{1,0}, ..., lower_{ne-1,0},
|
||||
/// lower_{0,1}, ..., lower_{ne-1,vdim-1}
|
||||
void GetElementBounds(const PLBound &plb, Vector &lower, Vector &upper,
|
||||
@@ -1914,7 +1946,7 @@ real_t ComputeElementLpDistance(real_t p, int i,
|
||||
GridFunction& gf1, GridFunction& gf2);
|
||||
|
||||
|
||||
/// Class used for extruding scalar GridFunctions
|
||||
/// Class used for extruding a scalar coefficient
|
||||
class ExtrudeCoefficient : public Coefficient
|
||||
{
|
||||
private:
|
||||
@@ -1922,13 +1954,53 @@ private:
|
||||
Mesh *mesh_in;
|
||||
Coefficient &sol_in;
|
||||
public:
|
||||
/// Constructs an instance of VectorExtrudeCoefficient
|
||||
/**
|
||||
* @param m 1D mesh
|
||||
* @param s 1D vector coefficient
|
||||
* @param n_ number of transverse elements of the extruded mesh
|
||||
*/
|
||||
ExtrudeCoefficient(Mesh *m, Coefficient &s, int n_)
|
||||
: n(n_), mesh_in(m), sol_in(s) { }
|
||||
: n(n_), mesh_in(m), sol_in(s)
|
||||
{ MFEM_VERIFY(n > 0, "Number of transverse elements must be positive!"); }
|
||||
|
||||
real_t Eval(ElementTransformation &T, const IntegrationPoint &ip) override;
|
||||
|
||||
virtual ~ExtrudeCoefficient() { }
|
||||
};
|
||||
|
||||
/// Extrude a scalar 1D GridFunction, after extruding the mesh with Extrude1D.
|
||||
/// Class used for extruding a vector coefficient
|
||||
class VectorExtrudeCoefficient : public VectorCoefficient
|
||||
{
|
||||
private:
|
||||
int n;
|
||||
Mesh *mesh_in;
|
||||
VectorCoefficient &sol_in;
|
||||
public:
|
||||
/// Constructs an instance of VectorExtrudeCoefficient
|
||||
/**
|
||||
* @param m 1D mesh
|
||||
* @param s 1D vector coefficient
|
||||
* @param n_ number of transverse elements of the extruded mesh
|
||||
*/
|
||||
VectorExtrudeCoefficient(Mesh *m, VectorCoefficient &s, int n_)
|
||||
: VectorCoefficient(s.GetVDim()), n(n_), mesh_in(m), sol_in(s)
|
||||
{ MFEM_VERIFY(n > 0, "Number of transverse elements must be positive!"); }
|
||||
|
||||
void Eval(Vector &v, ElementTransformation &T,
|
||||
const IntegrationPoint &ip) override;
|
||||
using VectorCoefficient::Eval;
|
||||
|
||||
virtual ~VectorExtrudeCoefficient() { }
|
||||
};
|
||||
|
||||
/// Extrude a 1D GridFunction, after extruding the mesh with Extrude1D()
|
||||
/**
|
||||
* @param mesh 1D mesh
|
||||
* @param mesh2d extruded mesh
|
||||
* @param sol grid function
|
||||
* @param ny number of transverse elements of the extruded mesh
|
||||
*/
|
||||
GridFunction *Extrude1DGridFunction(Mesh *mesh, Mesh *mesh2d,
|
||||
GridFunction *sol, const int ny);
|
||||
|
||||
|
||||
+2394
-161
File diff suppressed because it is too large
Load Diff
+349
-67
@@ -21,6 +21,45 @@
|
||||
|
||||
#ifdef MFEM_USE_GSLIB
|
||||
|
||||
/* gslib license and copyright statement for code adapted from gslib:
|
||||
|
||||
Copyright (c) 2008-2024, UCHICAGO ARGONNE, LLC.
|
||||
|
||||
The UChicago Argonne, LLC as Operator of Argonne National
|
||||
Laboratory holds copyright in the Software. The copyright holder
|
||||
reserves all rights except those expressly granted to licensees,
|
||||
and U.S. Government license rights.
|
||||
|
||||
Redistribution and use in source and binary forms, with or without
|
||||
modification, are permitted provided that the following conditions
|
||||
are met:
|
||||
|
||||
1. Redistributions of source code must retain the above copyright
|
||||
notice, this list of conditions and the disclaimer below.
|
||||
|
||||
2. Redistributions in binary form must reproduce the above copyright
|
||||
notice, this list of conditions and the disclaimer (as noted below)
|
||||
in the documentation and/or other materials provided with the
|
||||
distribution.
|
||||
|
||||
3. Neither the name of ANL nor the names of its contributors
|
||||
may be used to endorse or promote products derived from this software
|
||||
without specific prior written permission.
|
||||
|
||||
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
|
||||
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
|
||||
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
|
||||
FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL
|
||||
UCHICAGO ARGONNE, LLC, THE U.S. DEPARTMENT OF
|
||||
ENERGY OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
|
||||
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED
|
||||
TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
|
||||
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
|
||||
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
|
||||
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
|
||||
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||
*/
|
||||
|
||||
namespace gslib
|
||||
{
|
||||
struct comm;
|
||||
@@ -86,7 +125,7 @@ protected:
|
||||
void *fdataD;
|
||||
struct gslib::crystal *cr; // gslib's internal data
|
||||
struct gslib::comm *gsl_comm; // gslib's internal data
|
||||
int dim, points_cnt; // mesh dimension and number of points
|
||||
int dim, spacedim, points_cnt; // mesh dimension and number of points
|
||||
Array<unsigned int> gsl_code, gsl_proc, gsl_elem, gsl_mfem_elem;
|
||||
Vector gsl_mesh, gsl_ref, gsl_dist, gsl_mfem_ref;
|
||||
Array<unsigned int> recv_proc, recv_index; // data for custom interpolation
|
||||
@@ -104,18 +143,23 @@ protected:
|
||||
bool gpu_to_cpu_fallback = false;
|
||||
|
||||
// Device specific data used for FindPoints
|
||||
struct
|
||||
struct DEV_STRUCT
|
||||
{
|
||||
bool setup_device = false;
|
||||
bool find_device = false;
|
||||
int local_hash_size, dof1d, dof1d_sol, h_o_size, h_nx;
|
||||
int local_hash_size, dof1d, dof1d_sol, lh_nx, gh_nx;
|
||||
double newt_tol; // Tolerance specified during setup for Newton solve
|
||||
struct gslib::crystal *cr;
|
||||
struct gslib::hash_data_3 *hash3;
|
||||
struct gslib::hash_data_2 *hash2;
|
||||
mutable Vector bb, wtend, gll1d, lagcoeff, gll1d_sol, lagcoeff_sol;
|
||||
mutable Array<unsigned int> loc_hash_offset;
|
||||
mutable Vector loc_hash_min, loc_hash_fac;
|
||||
mutable Array<unsigned int> lh_offset, gh_offset;
|
||||
mutable Vector lh_min, lh_fac, gh_min, gh_fac;
|
||||
// Tolerance to mark points found on the surface as CODE_INTERNAL
|
||||
// or CODE_BORDER. This is needed because we cannot only use reference
|
||||
// space coordinates to determine if a point is located inside the
|
||||
// element or not.
|
||||
mutable double surf_dist_tol;
|
||||
} DEV;
|
||||
|
||||
/// Use GSLIB for communication and interpolation
|
||||
@@ -127,88 +171,157 @@ protected:
|
||||
Vector &field_out,
|
||||
const int field_out_ordering);
|
||||
|
||||
/// Since GSLIB is designed to work with quads/hexes, we split every
|
||||
/// triangle/tet/prism/pyramid element into quads/hexes.
|
||||
/** @brief Since GSLIB is designed to work with quads/hexes, we split every
|
||||
* triangle/tet/prism/pyramid element into quads/hexes. */
|
||||
virtual void SetupSplitMeshes();
|
||||
|
||||
/// Setup integration points that will be used to interpolate the nodal
|
||||
/// location at points expected by GSLIB.
|
||||
/** @brief Setup integration points that will be used to interpolate the
|
||||
* nodal location at points expected by GSLIB. */
|
||||
virtual void SetupIntegrationRuleForSplitMesh(Mesh *mesh,
|
||||
IntegrationRule *irule,
|
||||
int order);
|
||||
|
||||
/// Helper function that calls \ref SetupSplitMeshes and
|
||||
/// \ref SetupIntegrationRuleForSplitMesh.
|
||||
/** @brief Helper function that calls \ref SetupSplitMeshes and
|
||||
* \ref SetupIntegrationRuleForSplitMesh. */
|
||||
virtual void SetupSplitMeshesAndIntegrationRules(const int order);
|
||||
|
||||
/// Get GridFunction value at the points expected by GSLIB.
|
||||
virtual void GetNodalValues(const GridFunction *gf_in, Vector &node_vals) const;
|
||||
|
||||
/// Map {r,s,t} coordinates from [-1,1] to [0,1] for MFEM. For simplices,
|
||||
/// find the original element number (that was split into micro quads/hexes)
|
||||
/// during the setup phase.
|
||||
/** @brief Map {r,s,t} coordinates from [-1,1] to [0,1] for MFEM. For
|
||||
* simplices, find the original element number (that was split into
|
||||
* micro quads/hexes) during the setup phase. */
|
||||
virtual void MapRefPosAndElemIndices();
|
||||
|
||||
// Device functions
|
||||
// FindPoints locally on device for 3D.
|
||||
/// FindPoints locally on device for 3D.
|
||||
void FindPointsLocal3(const Vector &point_pos, int point_pos_ordering,
|
||||
Array<unsigned int> &gsl_code_dev_l,
|
||||
Array<unsigned int> &gsl_elem_dev_l, Vector &gsl_ref_l,
|
||||
Vector &gsl_dist_l, int npt);
|
||||
|
||||
// FindPoints locally on device for 2D.
|
||||
/// FindPoints locally on device for 2D.
|
||||
void FindPointsLocal2(const Vector &point_pos, int point_pos_ordering,
|
||||
Array<unsigned int> &gsl_code_dev_l,
|
||||
Array<unsigned int> &gsl_elem_dev_l, Vector &gsl_ref_l,
|
||||
Vector &gsl_dist_l, int npt);
|
||||
|
||||
// Interpolate on device for 3D.
|
||||
/// FindPoints locally on device for 3D surface elements.
|
||||
void FindPointsSurfLocal3(const Vector &point_pos,
|
||||
int point_pos_ordering,
|
||||
Array<unsigned int> &gsl_code_dev_l,
|
||||
Array<unsigned int> &gsl_elem_dev_l,
|
||||
Vector &gsl_ref_l,
|
||||
Vector &gsl_dist_l,
|
||||
int npt);
|
||||
|
||||
/// FindPoints locally on device for 3D edge elements.
|
||||
void FindPointsEdgeLocal3(const Vector &point_pos,
|
||||
int point_pos_ordering,
|
||||
Array<unsigned int> &gsl_code_dev_l,
|
||||
Array<unsigned int> &gsl_elem_dev_l,
|
||||
Vector &gsl_ref_l,
|
||||
Vector &gsl_dist_l,
|
||||
int npt);
|
||||
|
||||
/// FindPoints locally on device for 2D edge elements.
|
||||
void FindPointsEdgeLocal2(const Vector &point_pos,
|
||||
int point_pos_ordering,
|
||||
Array<unsigned int> &gsl_code_dev_l,
|
||||
Array<unsigned int> &gsl_elem_dev_l,
|
||||
Vector &gsl_ref_l,
|
||||
Vector &gsl_dist_l,
|
||||
int npt);
|
||||
|
||||
/// Interpolate on device for 3D.
|
||||
void InterpolateLocal3(const Vector &field_in,
|
||||
Array<int> &gsl_elem_dev_l,
|
||||
Vector &gsl_ref_l,
|
||||
Vector &field_out,
|
||||
int npt, int ncomp,
|
||||
int nel, int dof1dsol);
|
||||
// Interpolate on device for 2D.
|
||||
int dof1dsol);
|
||||
|
||||
/// Interpolate on device for 2D.
|
||||
void InterpolateLocal2(const Vector &field_in,
|
||||
Array<int> &gsl_elem_dev_l,
|
||||
Vector &gsl_ref_l,
|
||||
Vector &field_out,
|
||||
int npt, int ncomp,
|
||||
int nel, int dof1dsol);
|
||||
int dof1dsol);
|
||||
|
||||
// Prepare data for device functions.
|
||||
/// Interpolate on device for 1D.
|
||||
void InterpolateLocal1(const Vector &field_in,
|
||||
Array<int> &gsl_elem_dev_l,
|
||||
Vector &gsl_ref_l,
|
||||
Vector &field_out,
|
||||
int npt, int ncomp, int dof1dsol);
|
||||
|
||||
/// Prepare data for device execution for volume meshes.
|
||||
void SetupDevice();
|
||||
|
||||
/** Searches positions given in physical space by @a point_pos.
|
||||
/** @brief Searches positions given in physical space by @a point_pos.
|
||||
These positions can be ordered byNodes: (XXX...,YYY...,ZZZ) or
|
||||
byVDim: (XYZ,XYZ,....XYZ) specified by @a point_pos_ordering. */
|
||||
void FindPointsOnDevice(const Vector &point_pos,
|
||||
const int point_pos_ordering = Ordering::byNODES);
|
||||
|
||||
/** Interpolation of field values at prescribed reference space positions.
|
||||
@param[in] field_in_evec E-vector of grid function to be interpolated.
|
||||
Assumed ordering is NDOFSxVDIMxNEL
|
||||
@param[in] nel Number of elements in the mesh.
|
||||
@param[in] ncomp Number of components in the field.
|
||||
@param[in] dof1dsol Number of degrees of freedom in each reference
|
||||
space direction.
|
||||
@param[in] ordering Ordering of the out field values: byNodes/byVDIM
|
||||
|
||||
@param[out] field_out Interpolated values. For points that are not found
|
||||
the value is set to #default_interp_value. */
|
||||
/** @brief Interpolation of field values at prescribed reference space
|
||||
* positions.
|
||||
* @param[in] field_in_evec E-vector of grid function to be interpolated.
|
||||
* Assumed ordering is NDOFSxVDIMxNEL
|
||||
* @param[in] nel Number of elements in the mesh.
|
||||
* @param[in] ncomp Number of components in the field.
|
||||
* @param[in] dof1dsol Number of degrees of freedom in each reference
|
||||
* space direction.
|
||||
* @param[in] ordering Ordering of the out field values: byNodes/byVDIM
|
||||
*
|
||||
* @param[out] field_out Interpolated values. For points that are not
|
||||
* found the value is set to
|
||||
* #default_interp_value. */
|
||||
void InterpolateOnDevice(const Vector &field_in_evec, Vector &field_out,
|
||||
const int nel, const int ncomp,
|
||||
const int dof1dsol, const int ordering);
|
||||
|
||||
/** @brief Interpolation of field values at prescribed reference space
|
||||
* positions for surface meshes. */
|
||||
void InterpolateSurfBase(const Vector &field_in, Vector &field_out,
|
||||
const int nel, const int ncomp,
|
||||
const int dof1dsol, const int field_out_ordering);
|
||||
|
||||
/// Preprocess 2D surface mesh needed for FindPoints.
|
||||
void findptsedge_setup_2(DEV_STRUCT &devs,
|
||||
const double *const elx[2],
|
||||
const unsigned n,
|
||||
const uint nel,
|
||||
const unsigned m,
|
||||
const double bbox_tol,
|
||||
const uint local_hash_size,
|
||||
const uint global_hash_size);
|
||||
|
||||
/// Preprocess 3D surface mesh needed for FindPoints.
|
||||
void findptssurf_setup_3(DEV_STRUCT &devs,
|
||||
const double *const elx[3],
|
||||
const unsigned n,
|
||||
const uint nel,
|
||||
const unsigned m,
|
||||
const double bbox_tol,
|
||||
const uint local_hash_size,
|
||||
const uint global_hash_size,
|
||||
const int rD);
|
||||
|
||||
public:
|
||||
/// Serial constructor
|
||||
FindPointsGSLIB();
|
||||
|
||||
/// Serial constructor + setup with given Mesh (see \ref Setup)
|
||||
FindPointsGSLIB(Mesh &mesh_in, const double bb_t = 0.1,
|
||||
const double newt_tol = 1.0e-12,
|
||||
const int npt_max = 256);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
/// Constructor for ParMesh
|
||||
FindPointsGSLIB(MPI_Comm comm_);
|
||||
|
||||
/// Constructor + setup with given ParMesh (see \ref Setup)
|
||||
FindPointsGSLIB(ParMesh &mesh_in, const double bb_t = 0.1,
|
||||
const double newt_tol = 1.0e-12,
|
||||
const int npt_max = 256);
|
||||
@@ -218,8 +331,10 @@ public:
|
||||
FindPointsGSLIB(const FindPointsGSLIB&) = delete;
|
||||
FindPointsGSLIB& operator=(const FindPointsGSLIB&) = delete;
|
||||
|
||||
/** Initializes the internal mesh in gslib, by sending the positions of the
|
||||
Gauss-Lobatto nodes of the input Mesh object \p m.
|
||||
/** @brief Preprocess the internal mesh in gslib.
|
||||
|
||||
@details Initializes the internal mesh in gslib, by sending the
|
||||
positions of the Gauss-Lobatto nodes of the input Mesh object \p m.
|
||||
Note: not tested with periodic (L2).
|
||||
Note: the input mesh \p m must have Nodes set.
|
||||
|
||||
@@ -230,13 +345,22 @@ public:
|
||||
search methods.
|
||||
@param[in] npt_max (Optional) Number of points for simultaneous
|
||||
iteration. This alters performance and
|
||||
memory footprint.*/
|
||||
|
||||
memory footprint.
|
||||
*/
|
||||
void Setup(Mesh &m, const double bb_t = 0.1, const double newt_tol = 1.0e-12,
|
||||
const int npt_max = 256);
|
||||
/** Searches positions given in physical space by \p point_pos.
|
||||
These positions can be ordered byNodes: (XXX...,YYY...,ZZZ) or
|
||||
|
||||
/// Preprocess the surface mesh to compute data for FindPoints.
|
||||
void SetupSurf(Mesh &m,
|
||||
const double bb_t = 0.1,
|
||||
const double newt_tol = 1.0e-12,
|
||||
const int npt_max = 256);
|
||||
|
||||
/** @brief Searches positions given in physical space by \p point_pos.
|
||||
|
||||
@details These positions can be ordered byNodes: (XXX...,YYY...,ZZZ) or
|
||||
byVDim: (XYZ,XYZ,....XYZ) specified by \p point_pos_ordering.
|
||||
|
||||
This function populates the following member variables:
|
||||
#gsl_code Return codes for each point: inside element (0),
|
||||
element boundary (1), not found (2).
|
||||
@@ -255,19 +379,34 @@ public:
|
||||
#gsl_dist Distance between the sought and the found point
|
||||
in physical space. */
|
||||
void FindPoints(const Vector &point_pos,
|
||||
const int point_pos_ordering = Ordering::byNODES);
|
||||
int point_pos_ordering = Ordering::byNODES);
|
||||
|
||||
/// Convenience function when point positions are in a ParticleVector
|
||||
void FindPoints(const ParticleVector &point_pos)
|
||||
{
|
||||
FindPoints(point_pos, point_pos.GetOrdering());
|
||||
}
|
||||
|
||||
/** @brief Searches positions given in physical space by \p point_pos on
|
||||
* surface mesh. */
|
||||
void FindPointsSurf(const Vector &point_pos,
|
||||
int point_pos_ordering = Ordering::byNODES);
|
||||
|
||||
/// Convenience function when point positions are in a ParticleVector
|
||||
void FindPointsSurf(const ParticleVector &point_pos)
|
||||
{
|
||||
FindPointsSurf(point_pos, point_pos.GetOrdering());
|
||||
}
|
||||
|
||||
/// Setup FindPoints and search positions
|
||||
void FindPoints(Mesh &m, const Vector &point_pos,
|
||||
const int point_pos_ordering = Ordering::byNODES,
|
||||
const double bb_t = 0.1, const double newt_tol = 1.0e-12,
|
||||
const int npt_max = 256);
|
||||
|
||||
/** Interpolation of field values at prescribed reference space positions.
|
||||
/** @brief Interpolation of field values at prescribed reference space
|
||||
* positions.
|
||||
|
||||
@param[in] field_in Function values that will be interpolated on the
|
||||
reference positions. Note: it is assumed that
|
||||
\p field_in is in H1 and in the same space as the
|
||||
@@ -276,19 +415,36 @@ public:
|
||||
the value is set to #default_interp_value.
|
||||
The output ordering is determined from field_in.*/
|
||||
virtual void Interpolate(const GridFunction &field_in, Vector &field_out);
|
||||
|
||||
/// Interpolation of field values, with output ordering specification.
|
||||
virtual void Interpolate(const GridFunction &field_in, Vector &field_out,
|
||||
const int field_out_ordering);
|
||||
/** Search positions and interpolate. The ordering (byNODES or byVDIM) of
|
||||
the output values in \p field_out corresponds to the ordering used
|
||||
in the input GridFunction \p field_in. */
|
||||
|
||||
/** @brief Same as Interpolate but for surface meshes */
|
||||
virtual void InterpolateSurf(const GridFunction &field_in,
|
||||
Vector &field_out);
|
||||
|
||||
/** @brief Same as Interpolate but for surface meshes with specified output
|
||||
ordering */
|
||||
virtual void InterpolateSurf(const GridFunction &field_in,
|
||||
Vector &field_out,
|
||||
const int field_out_ordering);
|
||||
|
||||
/** @brief Search positions and interpolate.
|
||||
*
|
||||
* @details The ordering (byNODES or byVDIM) of the output values in
|
||||
* \p field_out corresponds to the ordering used in the input
|
||||
* GridFunction \p field_in.
|
||||
*/
|
||||
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
|
||||
Vector &field_out,
|
||||
const int point_pos_ordering = Ordering::byNODES);
|
||||
int point_pos_ordering = Ordering::byNODES);
|
||||
|
||||
/// Search positions and interpolate with given point and output ordering.
|
||||
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
|
||||
Vector &field_out, const int point_pos_ordering,
|
||||
const int field_out_ordering);
|
||||
|
||||
/** Setup FindPoints, search positions and interpolate. The ordering (byNODES
|
||||
or byVDIM) of the output values in \p field_out corresponds to the
|
||||
ordering used in the input GridFunction \p field_in. */
|
||||
@@ -296,32 +452,36 @@ public:
|
||||
const GridFunction &field_in, Vector &field_out,
|
||||
const int point_pos_ordering = Ordering::byNODES);
|
||||
|
||||
/// Average type to be used for L2 functions in-case a point is located at
|
||||
/// an element boundary where the function might be multi-valued.
|
||||
/** @brief Average type to be used for L2 functions in-case a point is
|
||||
* located at an element boundary where the function might be multi-valued.
|
||||
*/
|
||||
virtual void SetL2AvgType(AvgType avgtype_) { avgtype = avgtype_; }
|
||||
|
||||
/// Set the default interpolation value for points that are not found in the
|
||||
/// mesh.
|
||||
/** @brief Set the default interpolation value for points that are not found in the mesh. */
|
||||
virtual void SetDefaultInterpolationValue(double interp_value_)
|
||||
{
|
||||
default_interp_value = interp_value_;
|
||||
}
|
||||
|
||||
/// Set the tolerance for detecting points outside the 'curvilinear' boundary
|
||||
/// that gslib may return as found on the boundary. Points found on boundary
|
||||
/// with distance greater than @ bdr_tol are marked as not found.
|
||||
/** @brief Tolerance for detecting points outside the 'curvilinear' boundary.
|
||||
*
|
||||
* @details When using FindPoints, gslib may return points as found on the
|
||||
* boundary even when they are slightly outside the domain. This tolerance
|
||||
* is used to filter such points based on the distance^2 value and mark them
|
||||
* as not found.*/
|
||||
virtual void SetDistanceToleranceForPointsFoundOnBoundary(double bdr_tol_)
|
||||
{
|
||||
bdr_tol = bdr_tol_;
|
||||
}
|
||||
|
||||
/// Enable/Disable use of CPU functions for GPU data if the gslib version
|
||||
/// is older.
|
||||
/** @brief Enable/Disable use of CPU functions for GPU data if the gslib
|
||||
* version is older. */
|
||||
virtual void SetGPUtoCPUFallback(bool mode) { gpu_to_cpu_fallback = mode; }
|
||||
|
||||
/** Cleans up memory allocated internally by gslib.
|
||||
Note that in parallel, this must be called before MPI_Finalize(), as it
|
||||
calls MPI_Comm_free() for internal gslib communicators. FreeData is
|
||||
/** @brief Cleans up memory allocated internally by gslib.
|
||||
|
||||
@details Note that in parallel, this must be called before MPI_Finalize,
|
||||
as it calls MPI_Comm_free() for internal gslib communicators. FreeData is
|
||||
also called by the class destructor and there are no memory leaks if the
|
||||
destructor is called before MPI_Finalize(). If the destructor is called
|
||||
after MPI_Finalize(), there will be an error because gslib will try to
|
||||
@@ -329,8 +489,8 @@ public:
|
||||
*/
|
||||
virtual void FreeData();
|
||||
|
||||
/// Return code for each point searched by FindPoints: inside element (0), on
|
||||
/// element boundary (1), or not found (2).
|
||||
/** @brief Return code for each point searched by FindPoints:
|
||||
* inside element (0), element boundary (1), or not found (2). */
|
||||
virtual const Array<unsigned int> &GetCode() const { return gsl_code; }
|
||||
/// Return element number for each point found by FindPoints.
|
||||
virtual const Array<unsigned int> &GetElem() const { return gsl_mfem_elem; }
|
||||
@@ -338,15 +498,15 @@ public:
|
||||
virtual const Array<unsigned int> &GetProc() const { return gsl_proc; }
|
||||
/// Return reference coordinates for each point found by FindPoints.
|
||||
virtual const Vector &GetReferencePosition() const { return gsl_mfem_ref; }
|
||||
/// Return distance between the sought and the found point in physical space,
|
||||
/// for each point found by FindPoints.
|
||||
/// Return distance between the sought and the found point in physical space.
|
||||
virtual const Vector &GetDist() const { return gsl_dist; }
|
||||
|
||||
/// Return element number for each point found by FindPoints corresponding to
|
||||
/// GSLIB mesh. gsl_mfem_elem != gsl_elem for mesh with simplices.
|
||||
/** @brief Return element number for each point found by FindPoints
|
||||
* corresponding to GSLIB mesh. gsl_mfem_elem != gsl_elem for mesh with
|
||||
* simplices. */
|
||||
virtual const Array<unsigned int> &GetGSLIBElem() const { return gsl_elem; }
|
||||
/// Return reference coordinates in [-1,1] (internal range in GSLIB) for each
|
||||
/// point found by FindPoints.
|
||||
/** @brief Return reference coordinates in [-1,1] (internal range in GSLIB)
|
||||
* for each point found by FindPoints. */
|
||||
virtual const Vector &GetGSLIBReferencePosition() const { return gsl_ref; }
|
||||
|
||||
/// Get array of indices of not-found points.
|
||||
@@ -389,7 +549,7 @@ public:
|
||||
|
||||
/// Return the axis-aligned bounding boxes (AABB) computed during \ref Setup.
|
||||
/// The size of the returned vector is (nel x nverts x dim), where nel is the
|
||||
/// number of elements (after splitting for simplcies), nverts is number of
|
||||
/// number of elements (after splitting for simplicies), nverts is number of
|
||||
/// vertices (4 in 2D, 8 in 3D), and dim is the spatial dimension.
|
||||
void GetAxisAlignedBoundingBoxes(Vector &aabb) const;
|
||||
|
||||
@@ -403,6 +563,18 @@ public:
|
||||
/// \p obbV, a vector of size (nel x nverts x dim) .
|
||||
void GetOrientedBoundingBoxes(DenseTensor &obbA, Vector &obbC,
|
||||
Vector &obbV) const;
|
||||
|
||||
/** @brief Return the bounding boxes as a mesh on rank 0.
|
||||
*
|
||||
* @param[in] type Bounding-box type: 0 - AABB, 1 - OBB.
|
||||
*
|
||||
* @return On rank 0, returns a newly allocated mesh containing the
|
||||
* bounding boxes. The caller owns the returned pointer and is responsible
|
||||
* for deleting it. On other ranks, returns nullptr.
|
||||
*/
|
||||
Mesh *GetBoundingBoxMesh(int type);
|
||||
|
||||
virtual const Vector &GetGLLMesh() const { return gsl_mesh; }
|
||||
};
|
||||
|
||||
/** \brief OversetFindPointsGSLIB enables use of findpts for arbitrary number of
|
||||
@@ -530,6 +702,116 @@ public:
|
||||
void GS(Vector &senddata, GSOp op);
|
||||
};
|
||||
|
||||
#if defined(MFEM_USE_MPI)
|
||||
/** \brief Class to map a point in physical space to candidate ranks.
|
||||
*
|
||||
* This class builds a Cartesian-aligned tensor grid that covers the entire
|
||||
* domain and precomputes which ranks have elements intersecting each
|
||||
* grid cell. Given a point in physical space, the grid cell containing
|
||||
* the point is determined, and the list of candidate ranks whose
|
||||
* elements intersect that cell is returned. This yields a fast, conservative
|
||||
* point-to-rank candidate query. This is used internally by FindPointsGSLIB
|
||||
* to speed up point searches in parallel.
|
||||
*
|
||||
* See Mittal et al., "General Field Evaluation in High-Order Meshes on GPUs".
|
||||
* (2025). Computers & Fluids. for technical details.
|
||||
*
|
||||
*/
|
||||
class GlobalBBoxTensorGridMap
|
||||
{
|
||||
private:
|
||||
struct gslib::crystal *cr = nullptr; // gslib's internal data
|
||||
struct gslib::comm *gsl_comm = nullptr; // gslib's internal data
|
||||
int sdim, n_local_cells, num_procs;
|
||||
Array<int> gmap_n;
|
||||
Vector gmap_bnd_min, gmap_bnd_max;
|
||||
Vector gmap_fac;
|
||||
Array<int> ggrid_map;
|
||||
|
||||
void SetupCrystal(const MPI_Comm &comm);
|
||||
public:
|
||||
/// Constructor for a given mesh and number of tensor grid divisions
|
||||
GlobalBBoxTensorGridMap(ParMesh &pmesh, int nx);
|
||||
|
||||
/** @brief Constructor for given element bounds and spatial dimension.
|
||||
*
|
||||
* @details This constructor must be called collectively on \a comm.
|
||||
* Supports spatial dimensions 1, 2, and 3, and accepts nel == 0 on a rank.
|
||||
*
|
||||
* Assumes elmin, elmax Ordering::byNodes:
|
||||
* elmin -> [x_{0,min},x_{1,min},... ,y_{0,min},y_{1,min},..,z_{nel-1,min}]
|
||||
* elmax -> [x_{0,max},x_{1,max},... ,y_{0,max},y_{1,max},..,z_{nel-1,max}]
|
||||
* Note elmin, elmax can be obtained using GridFunction::GetElementBounds()
|
||||
*
|
||||
* When by_max_size=false, n gives the number of tensor-grid divisions in
|
||||
* each direction. When by_max_size=true, n is a per-rank size hint used to
|
||||
* derive a uniform global resolution. The communicator-wide sum of n is
|
||||
* converted to nx = ceil(pow(sum(n), 1./sdim)) in each direction, so n is
|
||||
* not a hard cap on ggrid_map.Size().
|
||||
*/
|
||||
GlobalBBoxTensorGridMap(const MPI_Comm &comm, Vector &elmin,
|
||||
Vector &elmax, int nel, int sdim, int n,
|
||||
bool by_max_size);
|
||||
|
||||
/** @brief Constructor for given element bounds, spatial dimension, and
|
||||
* tensor-grid divisions in each direction.
|
||||
*
|
||||
* @details This constructor must be called collectively on \a comm.
|
||||
* Supports spatial dimensions 1, 2, and 3, and accepts nel == 0 on a rank.
|
||||
* Requires nx.Size() == sdim and positive entries in nx.
|
||||
*
|
||||
* Assumes elmin, elmax Ordering::byNodes:
|
||||
* elmin -> [x_{0,min},x_{1,min},... ,y_{0,min},y_{1,min},..,z_{nel-1,min}]
|
||||
* elmax -> [x_{0,max},x_{1,max},... ,y_{0,max},y_{1,max},..,z_{nel-1,max}]
|
||||
* Note elmin, elmax can be obtained using GridFunction::GetElementBounds()
|
||||
*/
|
||||
GlobalBBoxTensorGridMap(const MPI_Comm &comm, Vector &elmin,
|
||||
Vector &elmax, int nel, int sdim, Array<int> &nx);
|
||||
|
||||
~GlobalBBoxTensorGridMap();
|
||||
|
||||
/** @brief Get list of procs corresponding to the list of points.
|
||||
*
|
||||
* @details This method must be called collectively on the communicator
|
||||
* used to construct the map. The input points can be ordered byNodes:
|
||||
* (XXX...,YYY...,ZZZ) or byVDIM: (XYZ,XYZ,...), as specified by
|
||||
* \a ordering.
|
||||
*
|
||||
* The output map contains one entry for each input point, keyed by the
|
||||
* point's local index in \a xyz. Points with no candidate ranks, including
|
||||
* points outside the global bounding box, have an empty list of candidate
|
||||
* ranks.
|
||||
*/
|
||||
void MapPointsToProcs(Vector &xyz, int ordering,
|
||||
std::map<int, std::vector<int>> &pt_to_procs) const;
|
||||
|
||||
// Some getters
|
||||
const Array<int> &GetGridMap() const { return ggrid_map; }
|
||||
const Vector &GetGridFac() const { return gmap_fac; }
|
||||
const Vector &GetGridMin() const { return gmap_bnd_min; }
|
||||
const Vector &GetGridMax() const { return gmap_bnd_max; }
|
||||
const Array<int> &GetGridN() const { return gmap_n; }
|
||||
|
||||
private:
|
||||
/// Setup the map given element bounds and number of tensor grid divisions.
|
||||
void Setup(const MPI_Comm &comm, Vector &elmin, Vector &elmax,
|
||||
int nel, Array<int> &nx);
|
||||
|
||||
/// Get global hash cell index for a given point.
|
||||
int GetGlobalGridCellFromPoint(Vector &xyz) const;
|
||||
|
||||
/** @brief Get owning proc and local index on that proc for given global
|
||||
* grid cell index. */
|
||||
void GlobalGridCellToProcAndLocalIndex(int i, int &proc, int &idx) const;
|
||||
|
||||
/// Map a point to proc and local index of the corresponding grid cell
|
||||
void GetProcAndLocalIndexFromPoint(Vector &xyz, int &proc, int &idx) const;
|
||||
|
||||
/// Given local cell index, return list of procs saved in the map
|
||||
Array<int> MapCellToProcs(int l_idx) const;
|
||||
};
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_GSLIB
|
||||
|
||||
@@ -254,7 +254,7 @@ get_edge(const double *elx[2], const double *wtend, int ei,
|
||||
edge.dxdn[d] = workspace + (2 + d) * pN; //dxdn and dydn at DOFs along edge
|
||||
}
|
||||
|
||||
if (side_init != (1u << ei))
|
||||
if (static_cast<unsigned>(side_init) != (1u << ei))
|
||||
{
|
||||
#define ELX(d, j, k) elx[d][j + k * pN] // assumes lexicographic ordering
|
||||
for (int d = 0; d < 2; ++d)
|
||||
@@ -562,7 +562,7 @@ newton_area_fin:
|
||||
int f = flags >> (2 * dd) & 3u;
|
||||
res->r[dd] = f == 0 ? r0[dd] + dr[dd] : (f == 1 ? -1 : 1);
|
||||
}
|
||||
res->flags = flags | (p->flags << 5);
|
||||
res->flags = flags | ((p->flags & FLAG_MASK) << 5);
|
||||
}
|
||||
|
||||
// Full Newton solve on the face. One of r/s/t is constrained.
|
||||
@@ -635,7 +635,8 @@ newton_edge_fin:
|
||||
res->r[de] = nr;
|
||||
res->r[dn]=p->r[dn];
|
||||
res->dist2p = -v;
|
||||
res->flags = flags | new_flags | (p->flags << 5);
|
||||
res->flags = flags | new_flags | ((p->flags & FLAG_MASK) << 5);
|
||||
#undef EVAL
|
||||
}
|
||||
|
||||
// Find closest mesh node to the sought point.
|
||||
@@ -714,7 +715,6 @@ static void FindPointsLocal2D_Kernel(const int npt,
|
||||
const double *lagcoeff,
|
||||
const int pN = 0)
|
||||
{
|
||||
#define MAX_CONST(a, b) (((a) > (b)) ? (a) : (b))
|
||||
const int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
const int D1D = T_D1D ? T_D1D : pN;
|
||||
const int p_NE = D1D*D1D;
|
||||
@@ -729,7 +729,7 @@ static void FindPointsLocal2D_Kernel(const int npt,
|
||||
// 3D1D for seed, 10D1D+6 for area, 3D1D+9 for edge
|
||||
constexpr int size1 = 10*MD1 + 6;
|
||||
constexpr int size2 = MD1*4; // edge constraints
|
||||
constexpr int size3 = MD1*MD1*MD1*DIM; // local element coordinates
|
||||
constexpr int size3 = MD1*MD1*DIM; // local element coordinates
|
||||
|
||||
MFEM_SHARED double r_workspace[size1];
|
||||
MFEM_SHARED findptsElementPoint_t el_pts[2];
|
||||
@@ -1162,9 +1162,9 @@ void FindPointsGSLIB::FindPointsLocal2(const Vector &point_pos,
|
||||
auto pgslm = gsl_mesh.Read();
|
||||
auto pwt = DEV.wtend.Read();
|
||||
auto pbb = DEV.bb.Read();
|
||||
auto plhm = DEV.loc_hash_min.Read();
|
||||
auto plhf = DEV.loc_hash_fac.Read();
|
||||
auto plho = DEV.loc_hash_offset.ReadWrite();
|
||||
auto plhm = DEV.lh_min.Read();
|
||||
auto plhf = DEV.lh_fac.Read();
|
||||
auto plho = DEV.lh_offset.ReadWrite();
|
||||
auto pcode = code.Write();
|
||||
auto pelem = elem.Write();
|
||||
auto pref = ref.Write();
|
||||
@@ -1177,30 +1177,32 @@ void FindPointsGSLIB::FindPointsLocal2(const Vector &point_pos,
|
||||
case 2:
|
||||
return FindPointsLocal2D_Kernel<2>(
|
||||
npt, DEV.newt_tol, pp, point_pos_ordering, pgslm, NE_split_total, pwt,
|
||||
pbb, DEV.h_nx, plhm, plhf, plho, pcode, pelem, pref, pdist,
|
||||
pbb, DEV.lh_nx, plhm, plhf, plho, pcode, pelem, pref, pdist,
|
||||
pgll1d, plc);
|
||||
case 3:
|
||||
return FindPointsLocal2D_Kernel<3>(
|
||||
npt, DEV.newt_tol, pp, point_pos_ordering, pgslm, NE_split_total, pwt,
|
||||
pbb, DEV.h_nx, plhm, plhf, plho, pcode, pelem, pref, pdist,
|
||||
pbb, DEV.lh_nx, plhm, plhf, plho, pcode, pelem, pref, pdist,
|
||||
pgll1d, plc);
|
||||
case 4:
|
||||
return FindPointsLocal2D_Kernel<4>(
|
||||
npt, DEV.newt_tol, pp, point_pos_ordering, pgslm, NE_split_total, pwt,
|
||||
pbb, DEV.h_nx, plhm, plhf, plho, pcode, pelem, pref, pdist,
|
||||
pbb, DEV.lh_nx, plhm, plhf, plho, pcode, pelem, pref, pdist,
|
||||
pgll1d, plc);
|
||||
case 5:
|
||||
return FindPointsLocal2D_Kernel<5>(
|
||||
npt, DEV.newt_tol, pp, point_pos_ordering, pgslm, NE_split_total, pwt,
|
||||
pbb, DEV.h_nx, plhm, plhf, plho, pcode, pelem, pref, pdist,
|
||||
pbb, DEV.lh_nx, plhm, plhf, plho, pcode, pelem, pref, pdist,
|
||||
pgll1d, plc);
|
||||
default:
|
||||
return FindPointsLocal2D_Kernel(npt, DEV.newt_tol, pp, point_pos_ordering,
|
||||
pgslm, NE_split_total, pwt, pbb, DEV.h_nx,
|
||||
pgslm, NE_split_total, pwt, pbb, DEV.lh_nx,
|
||||
plhm, plhf, plho, pcode, pelem,
|
||||
pref, pdist, pgll1d, plc, DEV.dof1d);
|
||||
}
|
||||
}
|
||||
#undef DIM2
|
||||
#undef DIM
|
||||
#undef CODE_INTERNAL
|
||||
#undef CODE_BORDER
|
||||
#undef CODE_NOT_FOUND
|
||||
|
||||
@@ -294,7 +294,7 @@ get_face(const double *elx[3], const double *wtend, int fi, double *workspace,
|
||||
face.dxdn[d] = workspace+(3+d)*p_Nfr;
|
||||
}
|
||||
|
||||
if (side_init != (1u << fi))
|
||||
if (static_cast<unsigned>(side_init) != (1u << fi))
|
||||
{
|
||||
const int e_stride[3] = {1, pN, pN*pN};
|
||||
#define ELX(d, j, k, l) elx[d][j*e_stride[d1]+k*e_stride[d2]+l*e_stride[dn]]
|
||||
@@ -342,7 +342,7 @@ get_edge(const double *elx[3], const double *wtend, int ei, double *workspace,
|
||||
|
||||
if (jidx >= 3*pN) { return edge; }
|
||||
|
||||
if (side_init != (64u << ei))
|
||||
if (static_cast<unsigned>(side_init) != (64u << ei))
|
||||
{
|
||||
const int e_stride[3] = {1, pN, pN*pN};
|
||||
#define ELX(d, j, k, l) elx[d][j*e_stride[de]+k*e_stride[dn1]+l*e_stride[dn2]]
|
||||
@@ -706,7 +706,7 @@ newton_vol_fin:
|
||||
int f = flags >> (2*dd) & 3u;
|
||||
res->r[dd] = f == 0 ? r0[dd]+dr[dd] : (f == 1 ? -1 : 1);
|
||||
}
|
||||
res->flags = flags | (p->flags << 7);
|
||||
res->flags = flags | ((p->flags & FLAG_MASK) << 7);
|
||||
}
|
||||
|
||||
// Full Newton solve on the face. One of r/s/t is constrained.
|
||||
@@ -889,7 +889,7 @@ newton_face_fin:
|
||||
res->r[dn] = p->r[dn];
|
||||
res->r[d1] = r[0];
|
||||
res->r[d2] = r[1];
|
||||
res->flags = new_flags | (p->flags << 7);
|
||||
res->flags = new_flags | ((p->flags & FLAG_MASK) << 7);
|
||||
}
|
||||
|
||||
// Full Newton solve on the edge. Two of r/s/t are constrained.
|
||||
@@ -973,7 +973,8 @@ newton_edge_fin:
|
||||
res->r[dn1] = p->r[dn1];
|
||||
res->r[dn2] = p->r[dn2];
|
||||
res->dist2p = -v;
|
||||
res->flags = flags | new_flags | (p->flags << 7);
|
||||
res->flags = flags | new_flags | ((p->flags & FLAG_MASK) << 7);
|
||||
#undef EVAL
|
||||
}
|
||||
|
||||
// Find closest mesh node to the sought point.
|
||||
@@ -1252,7 +1253,6 @@ static void FindPointsLocal3DKernel(const int npt,
|
||||
case 0: // findpt_vol
|
||||
{
|
||||
double *wtr = r_workspace_ptr;
|
||||
|
||||
double *resid = wtr+6*D1D;
|
||||
double *jac = resid+3;
|
||||
double *resid_temp = jac+9;
|
||||
@@ -1503,7 +1503,7 @@ static void FindPointsLocal3DKernel(const int npt,
|
||||
// Hes_T is transposed version (i.e. in col major)
|
||||
// n1*[2, 1, 1, 0, 0]
|
||||
// j==1 => wt_j = wt+n1
|
||||
double *wt_j = wt+D1D*(2-(row+1) / 2);
|
||||
double *wt_j = wt+D1D*(2 - (row+1)/2);
|
||||
const double *x = e_x[row+1][d];
|
||||
hes_T[j] = 0.0;
|
||||
for (int k = 0; k < D1D; ++k)
|
||||
@@ -1522,7 +1522,6 @@ static void FindPointsLocal3DKernel(const int npt,
|
||||
hes[j] += resid[d]*hes_T[j*3+d];
|
||||
}
|
||||
}
|
||||
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(l,x,1)
|
||||
@@ -1780,6 +1779,7 @@ static void FindPointsLocal3DKernel(const int npt,
|
||||
} //findpts_local
|
||||
} //elp
|
||||
});
|
||||
#undef MAXC
|
||||
}
|
||||
|
||||
void FindPointsGSLIB::FindPointsLocal3(const Vector &point_pos,
|
||||
@@ -1796,9 +1796,9 @@ void FindPointsGSLIB::FindPointsLocal3(const Vector &point_pos,
|
||||
auto pgslm = gsl_mesh.Read();
|
||||
auto pwt = DEV.wtend.Read();
|
||||
auto pbb = DEV.bb.Read();
|
||||
auto plhm = DEV.loc_hash_min.Read();
|
||||
auto plhf = DEV.loc_hash_fac.Read();
|
||||
auto plho = DEV.loc_hash_offset.ReadWrite();
|
||||
auto plhm = DEV.lh_min.Read();
|
||||
auto plhf = DEV.lh_fac.Read();
|
||||
auto plho = DEV.lh_offset.ReadWrite();
|
||||
auto pcode = code.Write();
|
||||
auto pelem = elem.Write();
|
||||
auto pref = ref.Write();
|
||||
@@ -1809,31 +1809,31 @@ void FindPointsGSLIB::FindPointsLocal3(const Vector &point_pos,
|
||||
{
|
||||
case 2:
|
||||
FindPointsLocal3DKernel<2>(npt, DEV.newt_tol, pp, point_pos_ordering,
|
||||
pgslm, NE_split_total, pwt, pbb, DEV.h_nx, plhm,
|
||||
pgslm, NE_split_total, pwt, pbb, DEV.lh_nx, plhm,
|
||||
plhf, plho, pcode, pelem, pref, pdist, pgll1d,
|
||||
plc);
|
||||
break;
|
||||
case 3:
|
||||
FindPointsLocal3DKernel<3>(npt, DEV.newt_tol, pp, point_pos_ordering,
|
||||
pgslm, NE_split_total, pwt, pbb, DEV.h_nx, plhm,
|
||||
pgslm, NE_split_total, pwt, pbb, DEV.lh_nx, plhm,
|
||||
plhf, plho, pcode, pelem, pref, pdist, pgll1d,
|
||||
plc);
|
||||
break;
|
||||
case 4:
|
||||
FindPointsLocal3DKernel<4>(npt, DEV.newt_tol, pp, point_pos_ordering,
|
||||
pgslm, NE_split_total, pwt, pbb, DEV.h_nx, plhm,
|
||||
pgslm, NE_split_total, pwt, pbb, DEV.lh_nx, plhm,
|
||||
plhf, plho, pcode, pelem, pref, pdist, pgll1d,
|
||||
plc);
|
||||
break;
|
||||
case 5:
|
||||
FindPointsLocal3DKernel<5>(npt, DEV.newt_tol, pp, point_pos_ordering,
|
||||
pgslm, NE_split_total, pwt, pbb, DEV.h_nx, plhm,
|
||||
pgslm, NE_split_total, pwt, pbb, DEV.lh_nx, plhm,
|
||||
plhf, plho, pcode, pelem, pref, pdist, pgll1d,
|
||||
plc);
|
||||
break;
|
||||
default:
|
||||
FindPointsLocal3DKernel(npt, DEV.newt_tol, pp, point_pos_ordering, pgslm,
|
||||
NE_split_total, pwt, pbb, DEV.h_nx, plhm, plhf,
|
||||
NE_split_total, pwt, pbb, DEV.lh_nx, plhm, plhf,
|
||||
plho, pcode, pelem, pref, pdist, pgll1d, plc,
|
||||
DEV.dof1d);
|
||||
}
|
||||
|
||||
@@ -0,0 +1,725 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../gslib.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
|
||||
#ifdef MFEM_USE_GSLIB
|
||||
|
||||
#ifdef MFEM_HAVE_GCC_PRAGMA_DIAGNOSTIC
|
||||
#pragma GCC diagnostic push
|
||||
#pragma GCC diagnostic ignored "-Wunused-function"
|
||||
#endif
|
||||
#include "gslib.h"
|
||||
#ifndef GSLIB_RELEASE_VERSION //gslib v1.0.7
|
||||
#define GSLIB_RELEASE_VERSION 10007
|
||||
#endif
|
||||
#ifdef MFEM_HAVE_GCC_PRAGMA_DIAGNOSTIC
|
||||
#pragma GCC diagnostic pop
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
#if GSLIB_RELEASE_VERSION >= 10009
|
||||
#define CODE_INTERNAL 0
|
||||
#define CODE_BORDER 1
|
||||
#define CODE_NOT_FOUND 2
|
||||
#define sDIM 2
|
||||
#define sDIM2 4
|
||||
#define rDIM 1
|
||||
|
||||
struct findptsElementPoint_t
|
||||
{
|
||||
double x[sDIM], r, oldr, dist2, dist2p, tr;
|
||||
int flags;
|
||||
};
|
||||
|
||||
struct findptsElementGEdge_t
|
||||
{
|
||||
double *x[sDIM];
|
||||
};
|
||||
|
||||
struct findptsElementGPT_t
|
||||
{
|
||||
double x[sDIM], jac[sDIM*rDIM], hes[sDIM*rDIM];
|
||||
};
|
||||
|
||||
struct dbl_range_t
|
||||
{
|
||||
double min, max;
|
||||
};
|
||||
|
||||
struct obbox_t
|
||||
{
|
||||
double c0[sDIM], A[sDIM*sDIM];
|
||||
dbl_range_t x[sDIM];
|
||||
};
|
||||
|
||||
struct findptsLocalHashData_t
|
||||
{
|
||||
int hash_n;
|
||||
dbl_range_t bnd[sDIM];
|
||||
double fac[sDIM];
|
||||
unsigned int *offset;
|
||||
};
|
||||
|
||||
static MFEM_HOST_DEVICE inline void lag_eval_second_der(double *p0, double x,
|
||||
int i, const double *z,
|
||||
const double *lCoeff,
|
||||
int pN)
|
||||
{
|
||||
double u0 = 1, u1 = 0, u2 = 0;
|
||||
for (int j = 0; j < pN; ++j)
|
||||
{
|
||||
if (i != j)
|
||||
{
|
||||
double d_j = 2 * (x-z[j]);
|
||||
u2 = d_j * u2 + u1;
|
||||
u1 = d_j * u1 + u0;
|
||||
u0 = d_j * u0;
|
||||
}
|
||||
}
|
||||
double *p1 = p0 + pN, *p2 = p0 + 2 * pN;
|
||||
p0[i] = lCoeff[i] * u0;
|
||||
p1[i] = 2.0 * lCoeff[i] * u1;
|
||||
p2[i] = 8.0 * lCoeff[i] * u2;
|
||||
}
|
||||
|
||||
/* positive when possibly inside */
|
||||
static MFEM_HOST_DEVICE inline double obbox_axis_test(const obbox_t *const b,
|
||||
const double x[sDIM])
|
||||
{
|
||||
double b_d;
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
b_d = (x[d] - b->x[d].min) * (b->x[d].max - x[d]);
|
||||
if (b_d < 0) // if outside in any dimension
|
||||
{
|
||||
return b_d;
|
||||
}
|
||||
}
|
||||
return b_d; // only positive if inside
|
||||
}
|
||||
|
||||
/* positive when given point is possibly inside given obbox b */
|
||||
static MFEM_HOST_DEVICE inline double obbox_test(const obbox_t *const b,
|
||||
const double x[sDIM])
|
||||
{
|
||||
const double bxyz = obbox_axis_test(b,x);
|
||||
if (bxyz<0) // test if point is in AABB
|
||||
{
|
||||
return bxyz;
|
||||
}
|
||||
else // test OBB only if inside AABB
|
||||
{
|
||||
double dxyz[sDIM];
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
dxyz[d] = x[d] - b->c0[d];
|
||||
}
|
||||
double test = 1;
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
double rst = 0;
|
||||
for (int e=0; e<sDIM; ++e)
|
||||
{
|
||||
rst += b->A[d*2 + e] * dxyz[e];
|
||||
}
|
||||
double brst = (rst+1)*(1-rst);
|
||||
test = test<0 ? test : brst;
|
||||
}
|
||||
return test;
|
||||
}
|
||||
}
|
||||
|
||||
/* Hash index in the hash table to the elements that possibly contain the point x */
|
||||
static MFEM_HOST_DEVICE inline int hash_index(const findptsLocalHashData_t *p,
|
||||
const double x[2])
|
||||
{
|
||||
const int n = p->hash_n;
|
||||
int sum = 0;
|
||||
for (int d=sDIM-1; d>=0; --d)
|
||||
{
|
||||
sum *= n;
|
||||
int i = (int)floor((x[d] - p->bnd[d].min) * p->fac[d]);
|
||||
sum += i<0 ? 0 : (n-1 < i ? n-1 : i);
|
||||
}
|
||||
return sum;
|
||||
}
|
||||
|
||||
static MFEM_HOST_DEVICE inline double l2norm2(const double x[2])
|
||||
{
|
||||
return x[0] * x[0] + x[1] * x[1];
|
||||
}
|
||||
|
||||
/* the bit structure of flags is CRR
|
||||
the C bit --- 1<<2 --- is set when the point is converged
|
||||
RR is 0 = 00b if r is unconstrained,
|
||||
1 = 01b if r is constrained at -1, i.e., rmin
|
||||
2 = 10b if r is constrained at +1, i.e., rmax
|
||||
*/
|
||||
|
||||
#define CONVERGED_FLAG (1u<<2)
|
||||
#define FLAG_MASK 0x07u // = 111b
|
||||
|
||||
/* returns 1 if r direction (the only free direction in 2D) is constrained.
|
||||
returns 1 if either 1st or 2nd bit of flags is set.
|
||||
*/
|
||||
static MFEM_HOST_DEVICE inline int num_constrained(const int flags)
|
||||
{
|
||||
return ((flags | flags>>1) & 1u);
|
||||
}
|
||||
|
||||
/* pi=0, r=-1; pi=1, r=+1 */
|
||||
static MFEM_HOST_DEVICE inline int point_index(const int x)
|
||||
{
|
||||
return ((x>>1) & 1u);
|
||||
}
|
||||
|
||||
/* check reduction in objective against prediction, and adjust
|
||||
trust region radius (p->tr) accordingly;
|
||||
may reject the prior step, returning 1; otherwise returns 0
|
||||
sets out->dist2, out->index, out->x, out->oldr in any event,
|
||||
leaving out->r, out->dr, out->flags to be set when returning 0 */
|
||||
static MFEM_HOST_DEVICE bool reject_prior_step_q(findptsElementPoint_t *out,
|
||||
const double resid[2],
|
||||
const findptsElementPoint_t *p,
|
||||
const double tol)
|
||||
{
|
||||
const double dist2 = l2norm2(resid);
|
||||
const double decr = p->dist2 - dist2;
|
||||
const double pred = p->dist2p;
|
||||
out->x[0] = p->x[0];
|
||||
out->x[1] = p->x[1];
|
||||
out->oldr = p->r;
|
||||
out->dist2 = dist2;
|
||||
if (decr >= 0.01*pred)
|
||||
{
|
||||
if (decr >= 0.9*pred) // very good iteration
|
||||
{
|
||||
out->tr = p->tr*2;
|
||||
}
|
||||
else // somewhat good iteration
|
||||
{
|
||||
out->tr = p->tr;
|
||||
}
|
||||
return false;
|
||||
}
|
||||
else
|
||||
{
|
||||
/* reject step; note: the point will pass through this routine
|
||||
again, and we set things up here so it gets classed as a
|
||||
"very good iteration" --- this doubles the trust radius,
|
||||
which is why we divide by 4 below */
|
||||
double v0 = fabs(p->r - p->oldr);
|
||||
out->tr = v0/4.0;
|
||||
out->dist2 = p->dist2;
|
||||
out->r = p->oldr;
|
||||
out->flags = p->flags>>3;
|
||||
out->dist2p = -HUGE_VAL;
|
||||
if (pred < dist2*tol)
|
||||
{
|
||||
out->flags |= CONVERGED_FLAG;
|
||||
}
|
||||
return true;
|
||||
}
|
||||
}
|
||||
|
||||
static MFEM_HOST_DEVICE inline void newton_edge( findptsElementPoint_t *const
|
||||
out,
|
||||
const double jac[2],
|
||||
const double rhess,
|
||||
const double resid[2],
|
||||
int flags,
|
||||
const findptsElementPoint_t *const p,
|
||||
const double tol )
|
||||
{
|
||||
const double tr = p->tr;
|
||||
const double A = jac[0] * jac[0] + jac[1] * jac[1] -
|
||||
rhess; // A = J^T J - resid_d H_d
|
||||
const double y = jac[0]*resid[0] + jac[1]*resid[1]; // y = J^T resid
|
||||
|
||||
const double oldr = p->r;
|
||||
double dr, newr, tdr, tnewr, v, tv;
|
||||
int new_flags=0, tnew_flags=0;
|
||||
|
||||
#define EVAL(dr) ( (dr*A - 2*y) * dr )
|
||||
if (A>0)
|
||||
{
|
||||
dr = y/A;
|
||||
if (fabs(dr)<tol)
|
||||
{
|
||||
dr=0.0;
|
||||
newr = oldr;
|
||||
}
|
||||
else
|
||||
{
|
||||
newr = oldr+dr;
|
||||
}
|
||||
|
||||
if (fabs(dr)<tr && fabs(newr)<1)
|
||||
{
|
||||
v = EVAL(dr);
|
||||
goto newton_edge_fin;
|
||||
}
|
||||
}
|
||||
|
||||
if ((newr=oldr-tr) > -1)
|
||||
{
|
||||
dr = -tr;
|
||||
}
|
||||
else
|
||||
{
|
||||
newr = -1, dr = -1-oldr, new_flags = flags|1u;
|
||||
}
|
||||
v = EVAL(dr);
|
||||
|
||||
if ((tnewr=oldr+tr) < 1)
|
||||
{
|
||||
tdr = tr;
|
||||
}
|
||||
else
|
||||
{
|
||||
tnewr = 1, tdr = 1-oldr, tnew_flags = flags|2u;
|
||||
}
|
||||
tv = EVAL(tdr);
|
||||
|
||||
if (tv<v)
|
||||
{
|
||||
newr = tnewr, dr = tdr, v = tv, new_flags = tnew_flags;
|
||||
}
|
||||
#undef EVAL
|
||||
|
||||
newton_edge_fin:
|
||||
// check convergence by testing if change in r is less than tol
|
||||
if (fabs(dr)<tol)
|
||||
{
|
||||
new_flags |= CONVERGED_FLAG;
|
||||
}
|
||||
out->r = newr;
|
||||
out->dist2p = -v;
|
||||
out->flags = flags | new_flags | ((p->flags & FLAG_MASK)<<3);
|
||||
}
|
||||
|
||||
static MFEM_HOST_DEVICE void seed_j( const double *elx[sDIM],
|
||||
const double x[sDIM],
|
||||
const double *z,
|
||||
double *dist2,
|
||||
double *r,
|
||||
const int ir,
|
||||
const int pN )
|
||||
{
|
||||
double dx[sDIM];
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
dx[d] = x[d] - elx[d][ir];
|
||||
}
|
||||
dist2[ir] = HUGE_VAL;
|
||||
const double dist2_rs = l2norm2(dx);
|
||||
if (dist2[ir]>dist2_rs)
|
||||
{
|
||||
dist2[ir] = dist2_rs;
|
||||
r[ir] = z[ir];
|
||||
}
|
||||
}
|
||||
|
||||
template<int T_D1D = 0>
|
||||
static void FindPointsEdgeLocal2D_Kernel( const int npt,
|
||||
const double tol,
|
||||
const double dist2tol,
|
||||
const double *x,
|
||||
const int point_pos_ordering,
|
||||
const double *xElemCoord,
|
||||
const int nel,
|
||||
const double *wtend,
|
||||
const double *boxinfo,
|
||||
const int hash_n,
|
||||
const double *hashMin,
|
||||
const double *hashFac,
|
||||
unsigned int *hashOffset,
|
||||
unsigned int *const code_base,
|
||||
unsigned int *const el_base,
|
||||
double *const r_base,
|
||||
double *const dist2_base,
|
||||
const double *gll1D,
|
||||
const double *lagcoeff,
|
||||
const int pN = 0 )
|
||||
{
|
||||
const int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
const int D1D = T_D1D ? T_D1D : pN;
|
||||
const int p_NEL = nel*D1D;
|
||||
MFEM_VERIFY(MD1<=DofQuadLimits::MAX_D1D,
|
||||
"Increase Max allowable polynomial order.");
|
||||
MFEM_VERIFY(pN<=DofQuadLimits::MAX_D1D,
|
||||
"Increase Max allowable polynomial order.");
|
||||
MFEM_VERIFY(D1D!=0, "Polynomial order not specified.");
|
||||
const int nThreads = D1D*sDIM;
|
||||
|
||||
mfem::forall_2D(npt, nThreads, 1, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
// 2D1D for seed, 3D1D + 7 for edge
|
||||
constexpr int size1 = 3*MD1 + 7;
|
||||
// edge coordinates = D1D*2
|
||||
constexpr int size2 = 2*MD1;
|
||||
// local element coordinates in shared memory
|
||||
constexpr int size3 = MD1*sDIM;
|
||||
|
||||
MFEM_SHARED findptsElementPoint_t el_pts[2];
|
||||
MFEM_SHARED double r_workspace[size1];
|
||||
|
||||
MFEM_SHARED double constraint_workspace[size2];
|
||||
|
||||
MFEM_SHARED double elem_coords[MD1 <= 6 ? size3 : 1];
|
||||
|
||||
double *r_workspace_ptr = r_workspace;
|
||||
findptsElementPoint_t *fpt, *tmp;
|
||||
fpt = el_pts + 0;
|
||||
tmp = el_pts + 1;
|
||||
|
||||
// x and y coord index within point_pos for point i
|
||||
int id_x = point_pos_ordering == 0 ? i : i*sDIM;
|
||||
int id_y = point_pos_ordering == 0 ? i+npt : i*sDIM+1;
|
||||
double x_i[2] = {x[id_x], x[id_y]};
|
||||
|
||||
unsigned int *code_i = code_base + i;
|
||||
double *dist2_i = dist2_base + i;
|
||||
|
||||
//---------------- map_points_to_els --------------------
|
||||
findptsLocalHashData_t hash;
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
hash.bnd[d].min = hashMin[d];
|
||||
hash.fac[d] = hashFac[d];
|
||||
}
|
||||
hash.hash_n = hash_n;
|
||||
hash.offset = hashOffset;
|
||||
|
||||
const int hi = hash_index(&hash, x_i);
|
||||
const unsigned int *elp = hash.offset + hash.offset[hi];
|
||||
const unsigned int *const ele = hash.offset + hash.offset[hi+1];
|
||||
*code_i = CODE_NOT_FOUND;
|
||||
*dist2_i = HUGE_VAL;
|
||||
|
||||
for (; elp!=ele; ++elp)
|
||||
{
|
||||
const unsigned int el = *elp;
|
||||
|
||||
obbox_t box;
|
||||
int n_box_ents = 3*sDIM + sDIM2;
|
||||
|
||||
for (int idx = 0; idx < sDIM; ++idx)
|
||||
{
|
||||
box.c0[idx] = boxinfo[n_box_ents*el + idx];
|
||||
box.x[idx].min = boxinfo[n_box_ents*el + sDIM + idx];
|
||||
box.x[idx].max = boxinfo[n_box_ents*el + 2*sDIM + idx];
|
||||
}
|
||||
|
||||
for (int idx = 0; idx < sDIM2; ++idx)
|
||||
{
|
||||
box.A[idx] = boxinfo[n_box_ents*el + 3*sDIM + idx];
|
||||
}
|
||||
|
||||
if (obbox_test(&box,x_i)>=0)
|
||||
{
|
||||
//------------ findpts_local ------------------
|
||||
{
|
||||
if (MD1 <= 6)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(j,x,D1D*sDIM)
|
||||
{
|
||||
const int qp = j % D1D;
|
||||
const int d = j / D1D;
|
||||
elem_coords[qp + d*D1D] =
|
||||
xElemCoord[qp + el*D1D + d*p_NEL];
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
|
||||
const double *elx[sDIM];
|
||||
for (int d=0; d<sDIM; d++)
|
||||
{
|
||||
elx[d] = MD1<= 6 ? &elem_coords[d*D1D] :
|
||||
xElemCoord + d*p_NEL + el*D1D;
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
//// findpts_el ////
|
||||
{
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
fpt->dist2 = HUGE_VAL;
|
||||
fpt->dist2p = 0;
|
||||
fpt->tr = 1;
|
||||
}
|
||||
MFEM_FOREACH_THREAD(j,x,sDIM)
|
||||
{
|
||||
fpt->x[j] = x_i[j];
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
{
|
||||
double *dist2_temp = r_workspace_ptr;
|
||||
double *r_temp = dist2_temp + D1D;
|
||||
MFEM_FOREACH_THREAD(j,x,D1D)
|
||||
{
|
||||
seed_j(elx, x_i, gll1D, dist2_temp, r_temp, j, D1D);
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
for (int ir=0; ir<D1D; ++ir)
|
||||
{
|
||||
if (dist2_temp[ir]<fpt->dist2)
|
||||
{
|
||||
fpt->dist2 = dist2_temp[ir];
|
||||
fpt->r = r_temp[ir];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
} //seed done
|
||||
|
||||
// Initialize tmp struct with fpt values before starting Newton iterations
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
tmp->dist2 = HUGE_VAL;
|
||||
tmp->dist2p = 0;
|
||||
tmp->tr = 1;
|
||||
tmp->flags = 0;
|
||||
tmp->r = fpt->r;
|
||||
}
|
||||
MFEM_FOREACH_THREAD(j,x,sDIM)
|
||||
{
|
||||
tmp->x[j] = fpt->x[j];
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
|
||||
for (int step=0; step<50; step++)
|
||||
{
|
||||
int nc = num_constrained(tmp->flags & FLAG_MASK);
|
||||
switch (nc)
|
||||
{
|
||||
case 0:
|
||||
{
|
||||
double *wt = r_workspace_ptr;
|
||||
double *resid = wt + 3*D1D;
|
||||
double *jac = resid + sDIM;
|
||||
double *hess = jac + sDIM*rDIM;
|
||||
|
||||
findptsElementGEdge_t edge;
|
||||
MFEM_FOREACH_THREAD(j,x,D1D)
|
||||
{
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
edge.x[d] = constraint_workspace + d*D1D;
|
||||
edge.x[d][j] = elx[d][j];
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// compute basis function info upto 2nd derivative
|
||||
MFEM_FOREACH_THREAD(j,x,D1D)
|
||||
{
|
||||
lag_eval_second_der(wt, tmp->r, j, gll1D,
|
||||
lagcoeff, D1D);
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(j,x,sDIM)
|
||||
{
|
||||
resid[j] = tmp->x[j];
|
||||
jac[j] = 0.0;
|
||||
hess[j] = 0.0;
|
||||
for (int k=0; k<D1D; ++k)
|
||||
{
|
||||
resid[j] -= wt[ k]*edge.x[j][k];
|
||||
jac[j] += wt[D1D+k]*edge.x[j][k];
|
||||
hess[j] += wt[2*D1D+k]*edge.x[j][k];
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
hess[2] = resid[0]*hess[0] + resid[1]*hess[1];
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
if (!reject_prior_step_q(fpt, resid, tmp, tol))
|
||||
{
|
||||
newton_edge(fpt, jac, hess[2], resid,
|
||||
tmp->flags & FLAG_MASK, tmp, tol);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
break;
|
||||
}
|
||||
case 1: // r is constrained to either -1 or 1
|
||||
{
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
const int pi = point_index(tmp->flags &
|
||||
FLAG_MASK);
|
||||
const double *wt = wtend + pi*3*D1D;
|
||||
findptsElementGPT_t gpt;
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
gpt.x[d] = elx[d][pi*(D1D-1)];
|
||||
gpt.jac[d] = 0.0;
|
||||
gpt.hes[d] = 0.0;
|
||||
for (int k=0; k<D1D; ++k)
|
||||
{
|
||||
gpt.jac[d] += wt[D1D +k]*elx[d][k];
|
||||
gpt.hes[d] += wt[2*D1D+k]*elx[d][k];
|
||||
}
|
||||
}
|
||||
|
||||
const double *const pt_x = gpt.x;
|
||||
const double *const jac = gpt.jac;
|
||||
const double *const hes = gpt.hes;
|
||||
double resid[sDIM], steep, sr;
|
||||
resid[0] = fpt->x[0] - pt_x[0];
|
||||
resid[1] = fpt->x[1] - pt_x[1];
|
||||
steep = jac[0]*resid[0] + jac[1]*resid[1];
|
||||
sr = steep*tmp->r;
|
||||
if ( !reject_prior_step_q(fpt, resid, tmp, tol) )
|
||||
{
|
||||
if (sr<0)
|
||||
{
|
||||
const double rhess = resid[0]*hes[0] +
|
||||
resid[1]*hes[1];
|
||||
newton_edge(fpt, jac, rhess,
|
||||
resid, 0, tmp, tol);
|
||||
}
|
||||
else // sr==0
|
||||
{
|
||||
fpt->r = tmp->r;
|
||||
fpt->dist2p = 0;
|
||||
fpt->flags = tmp->flags | CONVERGED_FLAG;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
break;
|
||||
} // case 1
|
||||
} //switch
|
||||
if (fpt->flags & CONVERGED_FLAG)
|
||||
{
|
||||
break;
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
*tmp = *fpt;
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
} //for int step<50
|
||||
} //findpts_el
|
||||
|
||||
bool converged_internal =
|
||||
((fpt->flags&FLAG_MASK) == CONVERGED_FLAG) &&
|
||||
(fpt->dist2<dist2tol);
|
||||
|
||||
if (*code_i == CODE_NOT_FOUND || converged_internal ||
|
||||
fpt->dist2 < *dist2_i)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
*(el_base+i) = el;
|
||||
*code_i = converged_internal ? CODE_INTERNAL : CODE_BORDER;
|
||||
*dist2_i = fpt->dist2;
|
||||
*(r_base+i) = fpt->r;
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
if (converged_internal)
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
} //findpts_local
|
||||
} //obbox_test
|
||||
} //elp
|
||||
});
|
||||
}
|
||||
|
||||
void FindPointsGSLIB::FindPointsEdgeLocal2( const Vector &point_pos,
|
||||
int point_pos_ordering,
|
||||
Array<unsigned int> &code,
|
||||
Array<unsigned int> &elem,
|
||||
Vector &ref,
|
||||
Vector &dist,
|
||||
int npt )
|
||||
{
|
||||
if (npt==0)
|
||||
{
|
||||
return;
|
||||
}
|
||||
MFEM_VERIFY(dim==1 && spacedim==2,"Function for 2D edges only");
|
||||
bool use_dev = point_pos.UseDevice();
|
||||
auto pp = point_pos.Read(use_dev);
|
||||
auto pgslm = gsl_mesh.Read(use_dev);
|
||||
auto pwt = DEV.wtend.Read(use_dev);
|
||||
auto pbb = DEV.bb.Read(use_dev);
|
||||
auto plhm = DEV.lh_min.Read(use_dev);
|
||||
auto plhf = DEV.lh_fac.Read(use_dev);
|
||||
auto plho = DEV.lh_offset.ReadWrite(use_dev);
|
||||
auto pcode = code.Write(use_dev);
|
||||
auto pelem = elem.Write(use_dev);
|
||||
auto pref = ref.Write(use_dev);
|
||||
auto pdist = dist.Write(use_dev);
|
||||
auto pgll1d = DEV.gll1d.ReadWrite(use_dev);
|
||||
auto plc = DEV.lagcoeff.Read(use_dev);
|
||||
double dist2tol = DEV.surf_dist_tol;
|
||||
switch (DEV.dof1d)
|
||||
{
|
||||
case 2:
|
||||
return FindPointsEdgeLocal2D_Kernel<2>(
|
||||
npt, DEV.newt_tol, dist2tol, pp, point_pos_ordering, pgslm,
|
||||
NE_split_total, pwt, pbb, DEV.lh_nx, plhm, plhf,
|
||||
plho, pcode, pelem, pref, pdist, pgll1d, plc);
|
||||
case 3:
|
||||
return FindPointsEdgeLocal2D_Kernel<3>(
|
||||
npt, DEV.newt_tol, dist2tol, pp, point_pos_ordering, pgslm,
|
||||
NE_split_total, pwt, pbb, DEV.lh_nx, plhm, plhf,
|
||||
plho, pcode, pelem, pref, pdist, pgll1d, plc);
|
||||
case 4:
|
||||
return FindPointsEdgeLocal2D_Kernel<4>(
|
||||
npt, DEV.newt_tol, dist2tol, pp, point_pos_ordering, pgslm,
|
||||
NE_split_total, pwt, pbb, DEV.lh_nx, plhm, plhf,
|
||||
plho, pcode, pelem, pref, pdist, pgll1d, plc);
|
||||
default:
|
||||
return FindPointsEdgeLocal2D_Kernel(
|
||||
npt, DEV.newt_tol, dist2tol, pp, point_pos_ordering, pgslm,
|
||||
NE_split_total, pwt, pbb, DEV.lh_nx, plhm, plhf,
|
||||
plho, pcode, pelem, pref, pdist, pgll1d, plc, DEV.dof1d);
|
||||
}
|
||||
}
|
||||
#undef sDIM
|
||||
#undef rDIM
|
||||
#undef sDIM2
|
||||
#undef CODE_INTERNAL
|
||||
#undef CODE_BORDER
|
||||
#undef CODE_NOT_FOUND
|
||||
#else
|
||||
void FindPointsGSLIB::FindPointsEdgeLocal2( const Vector &point_pos,
|
||||
int point_pos_ordering,
|
||||
Array<unsigned int> &code,
|
||||
Array<unsigned int> &elem,
|
||||
Vector &ref,
|
||||
Vector &dist,
|
||||
int npt ) {} ;
|
||||
#endif
|
||||
} // namespace mfem
|
||||
|
||||
#endif //ifdef MFEM_USE_GSLIB
|
||||
@@ -0,0 +1,733 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../gslib.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
|
||||
#ifdef MFEM_USE_GSLIB
|
||||
|
||||
|
||||
#ifdef MFEM_HAVE_GCC_PRAGMA_DIAGNOSTIC
|
||||
#pragma GCC diagnostic push
|
||||
#pragma GCC diagnostic ignored "-Wunused-function"
|
||||
#endif
|
||||
#include "gslib.h"
|
||||
#ifndef GSLIB_RELEASE_VERSION //gslib v1.0.7
|
||||
#define GSLIB_RELEASE_VERSION 10007
|
||||
#endif
|
||||
#ifdef MFEM_HAVE_GCC_PRAGMA_DIAGNOSTIC
|
||||
#pragma GCC diagnostic pop
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
#if GSLIB_RELEASE_VERSION >= 10009
|
||||
#define CODE_INTERNAL 0
|
||||
#define CODE_BORDER 1
|
||||
#define CODE_NOT_FOUND 2
|
||||
#define sDIM 3
|
||||
#define rDIM 1
|
||||
#define sDIM2 (sDIM*sDIM)
|
||||
#define rDIM2 (rDIM*rDIM)
|
||||
|
||||
struct findptsElementPoint_t
|
||||
{
|
||||
double x[sDIM], r, oldr, dist2, dist2p, tr;
|
||||
int flags;
|
||||
};
|
||||
|
||||
struct findptsElementGEdge_t
|
||||
{
|
||||
double *x[sDIM], *dxdn[sDIM], *d2xdn[sDIM];
|
||||
};
|
||||
|
||||
struct findptsElementGPT_t
|
||||
{
|
||||
double x[sDIM], jac[sDIM], hes[sDIM*(1+1)];
|
||||
};
|
||||
|
||||
struct dbl_range_t
|
||||
{
|
||||
double min, max;
|
||||
};
|
||||
|
||||
struct obbox_t
|
||||
{
|
||||
double c0[sDIM], A[sDIM*sDIM];
|
||||
dbl_range_t x[sDIM];
|
||||
};
|
||||
|
||||
struct findptsLocalHashData_t
|
||||
{
|
||||
int hash_n;
|
||||
dbl_range_t bnd[sDIM];
|
||||
double fac[sDIM];
|
||||
unsigned int *offset;
|
||||
};
|
||||
|
||||
static MFEM_HOST_DEVICE inline void lag_eval_second_der(double *p0, double x,
|
||||
int i, const double *z,
|
||||
const double *lCoeff,
|
||||
int pN)
|
||||
{
|
||||
double u0 = 1, u1 = 0, u2 = 0;
|
||||
for (int j=0; j<pN; ++j)
|
||||
{
|
||||
if (i!=j)
|
||||
{
|
||||
double d_j = 2 * (x-z[j]);
|
||||
u2 = d_j * u2 + u1;
|
||||
u1 = d_j * u1 + u0;
|
||||
u0 = d_j * u0;
|
||||
}
|
||||
}
|
||||
double *p1 = p0 + pN, *p2 = p0 + 2 * pN;
|
||||
p0[i] = lCoeff[i] * u0;
|
||||
p1[i] = 2.0 * lCoeff[i] * u1;
|
||||
p2[i] = 8.0 * lCoeff[i] * u2;
|
||||
}
|
||||
|
||||
/* positive when possibly inside */
|
||||
static MFEM_HOST_DEVICE inline double obbox_axis_test(const obbox_t *const b,
|
||||
const double x[sDIM])
|
||||
{
|
||||
double b_d;
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
b_d = (x[d] - b->x[d].min) * (b->x[d].max - x[d]);
|
||||
if (b_d < 0) // if outside in any dimension
|
||||
{
|
||||
return b_d;
|
||||
}
|
||||
}
|
||||
return b_d; // only positive if inside in all dimensions
|
||||
}
|
||||
|
||||
/* positive when possibly inside */
|
||||
static MFEM_HOST_DEVICE inline double obbox_test(const obbox_t *const b,
|
||||
const double x[sDIM])
|
||||
{
|
||||
const double bxyz = obbox_axis_test(b, x);
|
||||
if (bxyz<0)
|
||||
{
|
||||
return bxyz;
|
||||
}
|
||||
else
|
||||
{
|
||||
double dxyz[3];
|
||||
// dxyz: distance of the point from the center of the OBB
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
dxyz[d] = x[d] - b->c0[d];
|
||||
}
|
||||
// transform dxyz to the local coordinate system of the OBB,
|
||||
// and check if the point is inside the OBB [-1,1]^sDIM
|
||||
double test = 1;
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
double rst = 0;
|
||||
for (int e=0; e<sDIM; ++e)
|
||||
{
|
||||
rst += b->A[d*sDIM + e] * dxyz[e];
|
||||
}
|
||||
double brst = (rst+1)*(1-rst);
|
||||
test = test<0 ? test : brst;
|
||||
}
|
||||
return test;
|
||||
}
|
||||
}
|
||||
|
||||
/* Hash index in the hash table to the elements that possibly contain the point x */
|
||||
static MFEM_HOST_DEVICE inline int hash_index(const findptsLocalHashData_t *p,
|
||||
const double x[sDIM])
|
||||
{
|
||||
const int n = p->hash_n;
|
||||
int sum = 0;
|
||||
for (int d=sDIM-1; d>=0; --d)
|
||||
{
|
||||
sum *= n;
|
||||
int i = (int)floor((x[d] - p->bnd[d].min) * p->fac[d]);
|
||||
sum += i<0 ? 0 : (n-1 < i ? n-1 : i);
|
||||
}
|
||||
return sum;
|
||||
}
|
||||
|
||||
|
||||
static MFEM_HOST_DEVICE inline double norm2(const double x[sDIM])
|
||||
{
|
||||
return ( x[0]*x[0] + x[1]*x[1] + x[2]*x[2] );
|
||||
}
|
||||
|
||||
/* the bit structure of flags is CRR
|
||||
the C bit --- 1<<2 --- is set when the point is converged
|
||||
RR is 0 = 00b if r is unconstrained,
|
||||
1 = 01b if r is constrained at -1, i.e., rmin
|
||||
2 = 10b if r is constrained at +1, i.e., rmax
|
||||
*/
|
||||
#define CONVERGED_FLAG (1u<<2)
|
||||
#define FLAG_MASK 0x07u
|
||||
|
||||
/* returns the number of constrained reference coordinates, max 2
|
||||
*/
|
||||
static MFEM_HOST_DEVICE inline int num_constrained(const int flags)
|
||||
{
|
||||
const int y = (flags | flags>>1);
|
||||
return (y & 1u) + (y>>2 & 1u);
|
||||
}
|
||||
|
||||
static MFEM_HOST_DEVICE inline int point_index(const int x)
|
||||
{
|
||||
return ((x>>1)&1u) | ((x>>2)&2u);
|
||||
}
|
||||
|
||||
/* check reduction in objective against prediction, and adjust
|
||||
trust region radius (p->tr) accordingly;
|
||||
may reject the prior step, returning 1; otherwise returns 0
|
||||
sets out->dist2, out->index, out->x, out->oldr in any event,
|
||||
leaving out->r, out->dr, out->flags to be set when returning 0 */
|
||||
static MFEM_HOST_DEVICE bool reject_prior_step_q(findptsElementPoint_t *out,
|
||||
const double resid[3],
|
||||
const findptsElementPoint_t *p,
|
||||
const double tol)
|
||||
{
|
||||
const double dist2 = norm2(resid);
|
||||
const double decr = p->dist2 - dist2;
|
||||
const double pred = p->dist2p;
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
out->x[d] = p->x[d];
|
||||
}
|
||||
out->oldr = p->r;
|
||||
out->dist2 = dist2;
|
||||
if (decr>=0.01*pred)
|
||||
{
|
||||
if (decr>=0.9*pred) // very good iteration
|
||||
{
|
||||
out->tr = 2*p->tr;
|
||||
}
|
||||
else // good iteration
|
||||
{
|
||||
out->tr = p->tr;
|
||||
}
|
||||
return false;
|
||||
}
|
||||
else // if the iteration in not good
|
||||
{
|
||||
/* reject step; note: the point will pass through this routine
|
||||
again, and we set things up here so it gets classed as a
|
||||
"very good iteration" --- this doubles the trust radius,
|
||||
which is why we divide by 4 below */
|
||||
double v0 = fabs(p->r - p->oldr);
|
||||
out->tr = v0/4.0;
|
||||
out->dist2 = p->dist2;
|
||||
out->r = p->oldr;
|
||||
out->flags = p->flags>>3;
|
||||
out->dist2p = -HUGE_VAL;
|
||||
if (pred<dist2*tol)
|
||||
{
|
||||
out->flags |= CONVERGED_FLAG;
|
||||
}
|
||||
return true;
|
||||
}
|
||||
}
|
||||
|
||||
static MFEM_HOST_DEVICE inline void newton_edge(findptsElementPoint_t *const
|
||||
out,
|
||||
const double jac[sDIM*rDIM],
|
||||
const double rhes,
|
||||
const double resid[sDIM],
|
||||
int flags,
|
||||
const findptsElementPoint_t *const p,
|
||||
const double tol)
|
||||
{
|
||||
const double tr = p->tr;
|
||||
/* A = J^T J - resid_d H_d */
|
||||
const double A = jac[0]*jac[0]+ jac[1] * jac[1] + jac[2] * jac[2]
|
||||
- rhes;
|
||||
/* y = J^T r */
|
||||
const double y = jac[0]*resid[0] + jac[1]*resid[1] + jac[0+2]*resid[2];
|
||||
|
||||
const double oldr = p->r;
|
||||
double dr, nr, tdr, tnr;
|
||||
double v, tv;
|
||||
int new_flags = 0, tnew_flags = 0;
|
||||
|
||||
#define EVAL(dr) (dr*A - 2*y)*dr
|
||||
|
||||
/* if A is not SPD, quadratic model has no minimum */
|
||||
if (A>0)
|
||||
{
|
||||
dr = y/A;
|
||||
|
||||
if (fabs(dr)<tol)
|
||||
{
|
||||
dr=0.0;
|
||||
nr = oldr;
|
||||
}
|
||||
else
|
||||
{
|
||||
nr = oldr+dr;
|
||||
}
|
||||
if ( fabs(dr)<tr && fabs(nr)<1 )
|
||||
{
|
||||
v = EVAL(dr);
|
||||
goto newton_edge_fin;
|
||||
}
|
||||
}
|
||||
|
||||
if ( (nr=oldr-tr)>-1 )
|
||||
{
|
||||
dr = -tr;
|
||||
}
|
||||
else
|
||||
{
|
||||
nr = -1, dr = -1-oldr, new_flags = flags | 1u;
|
||||
}
|
||||
v = EVAL(dr);
|
||||
|
||||
if ( (tnr = oldr+tr)<1 )
|
||||
{
|
||||
tdr = tr;
|
||||
}
|
||||
else
|
||||
{
|
||||
tnr = 1, tdr = 1-oldr, tnew_flags = flags | 2u;
|
||||
}
|
||||
tv = EVAL(tdr);
|
||||
|
||||
if (tv<v)
|
||||
{
|
||||
nr = tnr, dr = tdr, v = tv, new_flags = tnew_flags;
|
||||
}
|
||||
|
||||
newton_edge_fin:
|
||||
/* check convergence */
|
||||
if ( fabs(dr)<tol )
|
||||
{
|
||||
new_flags |= CONVERGED_FLAG;
|
||||
}
|
||||
out->r = nr;
|
||||
out->dist2p = -v;
|
||||
out->flags = flags | new_flags | ((p->flags & FLAG_MASK)<<3);
|
||||
#undef EVAL
|
||||
}
|
||||
|
||||
static MFEM_HOST_DEVICE void seed_j(const double *elx[sDIM],
|
||||
const double x[sDIM],
|
||||
const double *z,
|
||||
double *dist2,
|
||||
double *r,
|
||||
const int ir,
|
||||
const int pN)
|
||||
{
|
||||
if (ir>=pN)
|
||||
{
|
||||
return;
|
||||
}
|
||||
|
||||
double dx[sDIM];
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
dx[d] = x[d] - elx[d][ir];
|
||||
}
|
||||
dist2[ir] = norm2(dx);;
|
||||
r[ir] = z[ir];
|
||||
}
|
||||
|
||||
template<int T_D1D = 0>
|
||||
static void FindPointsEdgeLocal3D_Kernel(const int npt,
|
||||
const double tol,
|
||||
const double dist2tol,
|
||||
const double *x,
|
||||
const int point_pos_ordering,
|
||||
const double *xElemCoord,
|
||||
const int nel,
|
||||
const double *wtend,
|
||||
const double *boxinfo,
|
||||
const int hash_n,
|
||||
const double *hashMin,
|
||||
const double *hashFac,
|
||||
unsigned int *hashOffset,
|
||||
unsigned int *const code_base,
|
||||
unsigned int *const el_base,
|
||||
double *const r_base,
|
||||
double *const dist2_base,
|
||||
const double *gll1D,
|
||||
const double *lagcoeff,
|
||||
const int pN = 0)
|
||||
{
|
||||
const int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
const int D1D = T_D1D ? T_D1D : pN;
|
||||
const int p_NEL = nel*D1D;
|
||||
MFEM_VERIFY(MD1<=DofQuadLimits::MAX_D1D,
|
||||
"Increase Max allowable polynomial order.");
|
||||
MFEM_VERIFY(pN<=DofQuadLimits::MAX_D1D,
|
||||
"Increase Max allowable polynomial order.");
|
||||
MFEM_VERIFY(D1D!=0, "Polynomial order not specified.");
|
||||
const int nThreads = D1D*sDIM;
|
||||
|
||||
mfem::forall_2D(npt, nThreads, 1, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
constexpr int size1 = 3*MD1 + 13;
|
||||
constexpr int size2 = 3*MD1;
|
||||
constexpr int size3 = MD1*sDIM;
|
||||
|
||||
MFEM_SHARED findptsElementPoint_t el_pts[2];
|
||||
MFEM_SHARED double r_workspace[size1];
|
||||
|
||||
MFEM_SHARED double constraint_workspace[size2];
|
||||
|
||||
MFEM_SHARED double elem_coords[MD1 <= 6 ? size3 : 1];
|
||||
|
||||
double *r_workspace_ptr = r_workspace;
|
||||
findptsElementPoint_t *fpt, *tmp;
|
||||
fpt = el_pts + 0;
|
||||
tmp = el_pts + 1;
|
||||
|
||||
int id_x = point_pos_ordering==0 ? i : i*sDIM;
|
||||
int id_y = point_pos_ordering==0 ? npt+i : 1+i*sDIM;
|
||||
int id_z = point_pos_ordering==0 ? 2*npt+i : 2+i*sDIM;
|
||||
double x_i[3] = {x[id_x], x[id_y], x[id_z]};
|
||||
|
||||
unsigned int *code_i = code_base + i;
|
||||
double *dist2_i = dist2_base + i;
|
||||
|
||||
//// map_points_to_els ////
|
||||
findptsLocalHashData_t hash;
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
hash.bnd[d].min = hashMin[d];
|
||||
hash.fac[d] = hashFac[d];
|
||||
}
|
||||
hash.hash_n = hash_n;
|
||||
hash.offset = hashOffset;
|
||||
|
||||
const unsigned int hi = hash_index(&hash, x_i);
|
||||
const unsigned int *elp = hash.offset + hash.offset[hi];
|
||||
const unsigned int *const ele = hash.offset + hash.offset[hi+1];
|
||||
*code_i = CODE_NOT_FOUND;
|
||||
*dist2_i = HUGE_VAL;
|
||||
|
||||
for (; elp!=ele; ++elp)
|
||||
{
|
||||
const unsigned int el = *elp;
|
||||
obbox_t box;
|
||||
int n_box_ents = 3*sDIM + sDIM2;
|
||||
|
||||
for (int idx = 0; idx < sDIM; ++idx)
|
||||
{
|
||||
box.c0[idx] = boxinfo[n_box_ents*el + idx];
|
||||
box.x[idx].min = boxinfo[n_box_ents*el + sDIM + idx];
|
||||
box.x[idx].max = boxinfo[n_box_ents*el + 2*sDIM + idx];
|
||||
}
|
||||
for (int idx = 0; idx < sDIM2; ++idx)
|
||||
{
|
||||
box.A[idx] = boxinfo[n_box_ents*el + 3*sDIM + idx];
|
||||
}
|
||||
|
||||
if (obbox_test(&box, x_i)>=0)
|
||||
{
|
||||
//// findpts_local ////
|
||||
{
|
||||
if (MD1 <= 6)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(j,x,D1D*sDIM)
|
||||
{
|
||||
const int qp = j % D1D;
|
||||
const int d = j / D1D;
|
||||
elem_coords[qp + d*D1D] =
|
||||
xElemCoord[qp + el*D1D + d*p_NEL];
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
|
||||
const double *elx[sDIM];
|
||||
for (int d=0; d<sDIM; d++)
|
||||
{
|
||||
elx[d] = MD1<= 6 ? &elem_coords[d*D1D] :
|
||||
xElemCoord + d*p_NEL + el*D1D;
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
//// findpts_el ////
|
||||
{
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
fpt->dist2 = HUGE_VAL;
|
||||
fpt->dist2p = 0;
|
||||
fpt->tr = 1.0;
|
||||
}
|
||||
MFEM_FOREACH_THREAD(j,x,sDIM)
|
||||
{
|
||||
fpt->x[j] = x_i[j];
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
//// seed ////
|
||||
{
|
||||
double *dist2_temp = r_workspace_ptr;
|
||||
double *r_temp = dist2_temp + D1D;
|
||||
MFEM_FOREACH_THREAD(j,x,nThreads)
|
||||
{
|
||||
seed_j(elx, x_i, gll1D, dist2_temp, r_temp, j, D1D);
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
fpt->dist2 = HUGE_VAL;
|
||||
for (int ir=0; ir<D1D; ++ir)
|
||||
{
|
||||
if (dist2_temp[ir] < fpt->dist2)
|
||||
{
|
||||
fpt->dist2 = dist2_temp[ir];
|
||||
fpt->r = r_temp[ir];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
} //seed done
|
||||
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
tmp->dist2 = HUGE_VAL;
|
||||
tmp->dist2p = 0;
|
||||
tmp->tr = 1;
|
||||
tmp->flags = 0;
|
||||
tmp->r = fpt->r;
|
||||
}
|
||||
MFEM_FOREACH_THREAD(j,x,sDIM)
|
||||
{
|
||||
tmp->x[j] = fpt->x[j];
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
for (int step=0; step<50; step++)
|
||||
{
|
||||
switch (num_constrained(tmp->flags & FLAG_MASK))
|
||||
{
|
||||
case 0:
|
||||
{
|
||||
double *wt = r_workspace_ptr;
|
||||
double *resid = wt + 3*D1D;
|
||||
double *jac = resid + sDIM;
|
||||
double *hess = jac + sDIM*rDIM;
|
||||
|
||||
findptsElementGEdge_t edge;
|
||||
MFEM_FOREACH_THREAD(j,x,D1D)
|
||||
{
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
edge.x[d] = constraint_workspace + d*D1D;
|
||||
edge.x[d][j] = elx[d][j];
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(j,x,D1D)
|
||||
{
|
||||
lag_eval_second_der(wt, tmp->r, j, gll1D,
|
||||
lagcoeff, D1D);
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(j,x,sDIM)
|
||||
{
|
||||
resid[j] = tmp->x[j];
|
||||
jac[j] = 0.0;
|
||||
hess[j] = 0.0;
|
||||
for (int k=0; k<D1D; ++k)
|
||||
{
|
||||
resid[j] -= wt[ k]*edge.x[j][k];
|
||||
jac[j] += wt[D1D+k]*edge.x[j][k];
|
||||
hess[j] += wt[2*D1D+k]*edge.x[j][k];
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
hess[3] = resid[0]*hess[0] + resid[1]*hess[1] +
|
||||
resid[2]*hess[2];
|
||||
}
|
||||
|
||||
MFEM_FOREACH_THREAD(l,x,1)
|
||||
{
|
||||
if (!reject_prior_step_q(fpt,resid,tmp,tol))
|
||||
{
|
||||
newton_edge(fpt,jac,hess[3],resid,
|
||||
tmp->flags&FLAG_MASK,tmp,tol);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
break;
|
||||
}
|
||||
case 1:
|
||||
{
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
const int pi = point_index(tmp->flags &
|
||||
FLAG_MASK);
|
||||
const double *wt = wtend + pi*3*D1D;
|
||||
findptsElementGPT_t gpt;
|
||||
for (int d=0; d<sDIM; ++d)
|
||||
{
|
||||
gpt.x[d] = elx[d][pi*(D1D-1)];
|
||||
gpt.jac[d] = 0.0;
|
||||
gpt.hes[d] = 0.0;
|
||||
for (int k=0; k<D1D; ++k)
|
||||
{
|
||||
gpt.jac[d] += wt[D1D +k]*elx[d][k];
|
||||
gpt.hes[d] += wt[2*D1D+k]*elx[d][k];
|
||||
}
|
||||
}
|
||||
|
||||
const double *const pt_x = gpt.x;
|
||||
const double *const jac = gpt.jac;
|
||||
const double *const hes = gpt.hes;
|
||||
double resid[sDIM], steep, sr;
|
||||
resid[0] = fpt->x[0] - pt_x[0];
|
||||
resid[1] = fpt->x[1] - pt_x[1];
|
||||
resid[2] = fpt->x[2] - pt_x[2];
|
||||
steep = jac[0]*resid[0] + jac[1]*resid[1] +
|
||||
jac[2]*resid[2];
|
||||
sr = steep*tmp->r;
|
||||
if (!reject_prior_step_q(fpt, resid, tmp, tol))
|
||||
{
|
||||
if (sr<0)
|
||||
{
|
||||
const double rhess = resid[0]*hes[0] +
|
||||
resid[1]*hes[1] +
|
||||
resid[2]*hes[2];
|
||||
newton_edge(fpt, jac, rhess,
|
||||
resid, 0, tmp, tol);
|
||||
}
|
||||
else // sr==0
|
||||
{
|
||||
fpt->r = tmp->r;
|
||||
fpt->dist2p = 0;
|
||||
fpt->flags = tmp->flags | CONVERGED_FLAG;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
break;
|
||||
} // case 1
|
||||
} //switch
|
||||
if (fpt->flags & CONVERGED_FLAG)
|
||||
{
|
||||
break;
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
*tmp = *fpt;
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
} // for step<50
|
||||
} // findpts_el
|
||||
|
||||
bool converged_internal =
|
||||
((fpt->flags&FLAG_MASK) == CONVERGED_FLAG) &&
|
||||
(fpt->dist2<dist2tol);
|
||||
if (*code_i==CODE_NOT_FOUND || converged_internal ||
|
||||
fpt->dist2<*dist2_i)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
*(el_base+i) = el;
|
||||
*code_i = converged_internal?CODE_INTERNAL:CODE_BORDER;
|
||||
*dist2_i = fpt->dist2;
|
||||
*(r_base+i) = fpt->r;
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
if (converged_internal)
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
} // findpts_local
|
||||
} // obbox_test
|
||||
} // elp
|
||||
});
|
||||
}
|
||||
|
||||
void FindPointsGSLIB::FindPointsEdgeLocal3(const Vector &point_pos,
|
||||
int point_pos_ordering,
|
||||
Array<unsigned int> &code,
|
||||
Array<unsigned int> &elem,
|
||||
Vector &ref,
|
||||
Vector &dist,
|
||||
int npt)
|
||||
{
|
||||
if (npt == 0)
|
||||
{
|
||||
return;
|
||||
}
|
||||
MFEM_VERIFY(spacedim==3 && dim == 1,"Function for 3D edges only");
|
||||
bool use_dev = point_pos.UseDevice();
|
||||
auto pp = point_pos.Read(use_dev);
|
||||
auto pgslm = gsl_mesh.Read(use_dev);
|
||||
auto pwt = DEV.wtend.Read(use_dev);
|
||||
auto pbb = DEV.bb.Read(use_dev);
|
||||
auto plhm = DEV.lh_min.Read(use_dev);
|
||||
auto plhf = DEV.lh_fac.Read(use_dev);
|
||||
auto plho = DEV.lh_offset.ReadWrite(use_dev);
|
||||
auto pcode = code.Write(use_dev);
|
||||
auto pelem = elem.Write(use_dev);
|
||||
auto pref = ref.Write(use_dev);
|
||||
auto pdist = dist.Write(use_dev);
|
||||
auto pgll1d = DEV.gll1d.ReadWrite(use_dev);
|
||||
auto plc = DEV.lagcoeff.Read(use_dev);
|
||||
double dist2tol = DEV.surf_dist_tol;
|
||||
switch (DEV.dof1d)
|
||||
{
|
||||
case 2:
|
||||
return FindPointsEdgeLocal3D_Kernel<2>(
|
||||
npt, DEV.newt_tol, dist2tol, pp, point_pos_ordering, pgslm,
|
||||
NE_split_total, pwt, pbb, DEV.lh_nx, plhm, plhf,
|
||||
plho, pcode, pelem, pref, pdist, pgll1d, plc);
|
||||
case 3:
|
||||
return FindPointsEdgeLocal3D_Kernel<3>(
|
||||
npt, DEV.newt_tol, dist2tol, pp, point_pos_ordering, pgslm,
|
||||
NE_split_total, pwt, pbb, DEV.lh_nx, plhm, plhf,
|
||||
plho, pcode, pelem, pref, pdist, pgll1d, plc);
|
||||
case 4:
|
||||
return FindPointsEdgeLocal3D_Kernel<4>(
|
||||
npt, DEV.newt_tol, dist2tol, pp, point_pos_ordering, pgslm,
|
||||
NE_split_total, pwt, pbb, DEV.lh_nx, plhm, plhf,
|
||||
plho, pcode, pelem, pref, pdist, pgll1d, plc);
|
||||
default:
|
||||
return FindPointsEdgeLocal3D_Kernel(
|
||||
npt, DEV.newt_tol, dist2tol, pp, point_pos_ordering, pgslm,
|
||||
NE_split_total, pwt, pbb, DEV.lh_nx, plhm, plhf,
|
||||
plho, pcode, pelem, pref, pdist, pgll1d, plc, DEV.dof1d);
|
||||
}
|
||||
}
|
||||
#undef rDIM2
|
||||
#undef sDIM2
|
||||
#undef rDIM
|
||||
#undef sDIM
|
||||
#undef CODE_INTERNAL
|
||||
#undef CODE_BORDER
|
||||
#undef CODE_NOT_FOUND
|
||||
#else
|
||||
void FindPointsGSLIB::FindPointsEdgeLocal3( const Vector &point_pos,
|
||||
int point_pos_ordering,
|
||||
Array<unsigned int> &code,
|
||||
Array<unsigned int> &elem,
|
||||
Vector &ref,
|
||||
Vector &dist,
|
||||
int npt ) {} ;
|
||||
#endif
|
||||
} // namespace mfem
|
||||
|
||||
#endif //ifdef MFEM_USE_GSLIB
|
||||
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,157 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../gslib.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
#include "../../linalg/kernels.hpp"
|
||||
|
||||
#ifdef MFEM_USE_GSLIB
|
||||
|
||||
#ifdef MFEM_HAVE_GCC_PRAGMA_DIAGNOSTIC
|
||||
#pragma GCC diagnostic push
|
||||
#pragma GCC diagnostic ignored "-Wunused-function"
|
||||
#endif
|
||||
#include "gslib.h"
|
||||
#ifndef GSLIB_RELEASE_VERSION //gslib v1.0.7
|
||||
#define GSLIB_RELEASE_VERSION 10007
|
||||
#endif
|
||||
#ifdef MFEM_HAVE_GCC_PRAGMA_DIAGNOSTIC
|
||||
#pragma GCC diagnostic pop
|
||||
#endif
|
||||
namespace mfem
|
||||
{
|
||||
#if GSLIB_RELEASE_VERSION >= 10009
|
||||
#define CODE_INTERNAL 0
|
||||
#define CODE_BORDER 1
|
||||
#define CODE_NOT_FOUND 2
|
||||
|
||||
static MFEM_HOST_DEVICE void lagrange_eval(double *p0, double x,
|
||||
int i, int p_Nq,
|
||||
double *z, double *lagrangeCoeff)
|
||||
{
|
||||
double p_i = (1 << (p_Nq - 1));
|
||||
for (int j=0; j<p_Nq; ++j)
|
||||
{
|
||||
p_i *= j==i ? 1 : x-z[j];
|
||||
}
|
||||
p0[i] = lagrangeCoeff[i] * p_i;
|
||||
}
|
||||
|
||||
template<int T_D1D = 0>
|
||||
static void InterpolateLocal1DKernel(const double *const gf_in,
|
||||
int *const el,
|
||||
double *const r,
|
||||
double *const int_out,
|
||||
const int npt,
|
||||
const int nfields,
|
||||
double *gll1D,
|
||||
double *lagcoeff,
|
||||
const int pN = 0)
|
||||
{
|
||||
const int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
const int D1D = T_D1D ? T_D1D : pN;
|
||||
const int p_Nq = D1D;
|
||||
MFEM_VERIFY(MD1 <= DofQuadLimits::MAX_D1D,
|
||||
"Increase Max allowable polynomial order.");
|
||||
MFEM_VERIFY(pN<=DofQuadLimits::MAX_D1D,
|
||||
"Increase Max allowable polynomial order.");
|
||||
MFEM_VERIFY(D1D != 0, "Polynomial order not specified.");
|
||||
// for each point of the npt points, create a thread block of size dof1Dsol
|
||||
mfem::forall_2D(npt, D1D, 1, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
MFEM_SHARED double wtr[MD1];
|
||||
MFEM_SHARED double sums[MD1];
|
||||
|
||||
// Evaluate basis functions at the reference space coordinates
|
||||
MFEM_FOREACH_THREAD(j,x,D1D)
|
||||
{
|
||||
lagrange_eval(wtr, r[i], j, p_Nq, gll1D, lagcoeff);
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
for (int fld=0; fld<nfields; ++fld)
|
||||
{
|
||||
// If using GetNodalValues, ordering is NDOFS x NEL x VDIM and the
|
||||
// offset would be `el[i] * p_Nq + fld * gf_offset`.
|
||||
// R->Mult produces element vectors in NDOFS x VDIM x NEL layout.
|
||||
const int elemOffset = el[i]*nfields*p_Nq + fld*p_Nq;
|
||||
MFEM_FOREACH_THREAD(j,x,D1D)
|
||||
{
|
||||
sums[j] = wtr[j] * gf_in[elemOffset + j];
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD(j,x,1)
|
||||
{
|
||||
double sumv = 0.0;
|
||||
// sum the contributions of each lagrange polynomial
|
||||
for (int jj=0; jj<D1D; ++jj)
|
||||
{
|
||||
sumv += sums[jj];
|
||||
}
|
||||
int_out[fld*npt + i] = sumv;
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void FindPointsGSLIB::InterpolateLocal1( const Vector &field_in,
|
||||
Array<int> &gsl_elem_dev_l,
|
||||
Vector &gsl_ref_l,
|
||||
Vector &field_out,
|
||||
int npt,
|
||||
int ncomp,
|
||||
int dof1Dsol )
|
||||
{
|
||||
MFEM_VERIFY(dim == 1, "Kernel for edges only.");
|
||||
if (npt == 0) { return; }
|
||||
bool use_dev = field_in.UseDevice();
|
||||
auto pfin = field_in.Read(use_dev);
|
||||
auto pgsl = gsl_elem_dev_l.ReadWrite(use_dev);
|
||||
auto pgslr = gsl_ref_l.ReadWrite(use_dev);
|
||||
auto pfout = field_out.Write(use_dev);
|
||||
auto pgll = DEV.gll1d_sol.ReadWrite(use_dev);
|
||||
auto plcf = DEV.lagcoeff_sol.ReadWrite(use_dev);
|
||||
switch (dof1Dsol)
|
||||
{
|
||||
case 2: return InterpolateLocal1DKernel<2>(pfin, pgsl, pgslr, pfout,
|
||||
npt, ncomp,
|
||||
pgll, plcf);
|
||||
case 3: return InterpolateLocal1DKernel<3>(pfin, pgsl, pgslr, pfout,
|
||||
npt, ncomp,
|
||||
pgll, plcf);
|
||||
case 4: return InterpolateLocal1DKernel<4>(pfin, pgsl, pgslr, pfout,
|
||||
npt, ncomp,
|
||||
pgll, plcf);
|
||||
case 5: return InterpolateLocal1DKernel<5>(pfin, pgsl, pgslr, pfout,
|
||||
npt, ncomp,
|
||||
pgll, plcf);
|
||||
default: return InterpolateLocal1DKernel(pfin, pgsl, pgslr, pfout,
|
||||
npt, ncomp,
|
||||
pgll, plcf, dof1Dsol);
|
||||
}
|
||||
}
|
||||
#undef CODE_INTERNAL
|
||||
#undef CODE_BORDER
|
||||
#undef CODE_NOT_FOUND
|
||||
#else
|
||||
void FindPointsGSLIB::InterpolateLocal1(const Vector &field_in,
|
||||
Array<int> &gsl_elem_dev_l,
|
||||
Vector &gsl_ref_l,
|
||||
Vector &field_out,
|
||||
int npt, int ncomp,
|
||||
int dof1Dsol) {};
|
||||
#endif
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif //ifdef MFEM_USE_GSLIB
|
||||
@@ -52,8 +52,6 @@ static void InterpolateLocal2DKernel(const double *const gf_in,
|
||||
double *const int_out,
|
||||
const int npt,
|
||||
const int ncomp,
|
||||
const int nel,
|
||||
const int gf_offset,
|
||||
double *gll1D,
|
||||
double *lagcoeff,
|
||||
const int pN = 0)
|
||||
@@ -64,6 +62,8 @@ static void InterpolateLocal2DKernel(const double *const gf_in,
|
||||
const int p_Np = D1D*D1D;
|
||||
MFEM_VERIFY(MD1 <= DofQuadLimits::MAX_D1D,
|
||||
"Increase Max allowable polynomial order.");
|
||||
MFEM_VERIFY(pN<=DofQuadLimits::MAX_D1D,
|
||||
"Increase Max allowable polynomial order.");
|
||||
MFEM_VERIFY(D1D != 0, "Polynomial order not specified.");
|
||||
mfem::forall_2D(npt, D1D, D1D, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
@@ -82,9 +82,9 @@ static void InterpolateLocal2DKernel(const double *const gf_in,
|
||||
|
||||
for (int fld = 0; fld < Nfields; ++fld)
|
||||
{
|
||||
// If using GetNodalValues, ordering is NDOFSxNELxVDIM
|
||||
// const int elemOffset = el[i] * p_Np + fld * gf_offset;
|
||||
//if using R->Mult for L -> E-Vec use below: NDOFSxVDIMxNEL
|
||||
// If using GetNodalValues, ordering is NDOFS x NEL x VDIM and the
|
||||
// offset would be `el[i] * p_Np + fld * gf_offset`.
|
||||
// R->Mult produces element vectors in NDOFS x VDIM x NEL layout.
|
||||
const int elemOffset = el[i] * p_Np * Nfields + fld * p_Np;
|
||||
MFEM_FOREACH_THREAD(j,x,D1D)
|
||||
{
|
||||
@@ -120,32 +120,32 @@ void FindPointsGSLIB::InterpolateLocal2(const Vector &field_in,
|
||||
Vector &gsl_ref_l,
|
||||
Vector &field_out,
|
||||
int npt, int ncomp,
|
||||
int nel, int dof1Dsol)
|
||||
int dof1Dsol)
|
||||
{
|
||||
if (npt == 0) { return; }
|
||||
const int gf_offset = field_in.Size()/ncomp;
|
||||
auto pfin = field_in.Read();
|
||||
auto pgsl = gsl_elem_dev_l.ReadWrite();
|
||||
auto pgslr = gsl_ref_l.ReadWrite();
|
||||
auto pfout = field_out.Write();
|
||||
auto pgll = DEV.gll1d_sol.ReadWrite();
|
||||
auto plcf = DEV.lagcoeff_sol.ReadWrite();
|
||||
bool use_dev = field_in.UseDevice();
|
||||
auto pfin = field_in.Read(use_dev);
|
||||
auto pgsl = gsl_elem_dev_l.ReadWrite(use_dev);
|
||||
auto pgslr = gsl_ref_l.ReadWrite(use_dev);
|
||||
auto pfout = field_out.Write(use_dev);
|
||||
auto pgll = DEV.gll1d_sol.ReadWrite(use_dev);
|
||||
auto plcf = DEV.lagcoeff_sol.ReadWrite(use_dev);
|
||||
switch (dof1Dsol)
|
||||
{
|
||||
case 2: return InterpolateLocal2DKernel<2>(pfin, pgsl, pgslr, pfout,
|
||||
npt, ncomp, nel, gf_offset,
|
||||
npt, ncomp,
|
||||
pgll, plcf);
|
||||
case 3: return InterpolateLocal2DKernel<3>(pfin, pgsl, pgslr, pfout,
|
||||
npt, ncomp, nel, gf_offset,
|
||||
npt, ncomp,
|
||||
pgll, plcf);
|
||||
case 4: return InterpolateLocal2DKernel<4>(pfin, pgsl, pgslr, pfout,
|
||||
npt, ncomp, nel, gf_offset,
|
||||
npt, ncomp,
|
||||
pgll, plcf);
|
||||
case 5: return InterpolateLocal2DKernel<5>(pfin, pgsl, pgslr, pfout,
|
||||
npt, ncomp, nel, gf_offset,
|
||||
npt, ncomp,
|
||||
pgll, plcf);
|
||||
default: return InterpolateLocal2DKernel(pfin, pgsl, pgslr, pfout,
|
||||
npt, ncomp, nel, gf_offset,
|
||||
npt, ncomp,
|
||||
pgll, plcf, dof1Dsol);
|
||||
}
|
||||
}
|
||||
@@ -160,7 +160,7 @@ void FindPointsGSLIB::InterpolateLocal2(const Vector &field_in,
|
||||
Vector &gsl_ref_l,
|
||||
Vector &field_out,
|
||||
int npt, int ncomp,
|
||||
int nel, int dof1Dsol) {};
|
||||
int dof1Dsol) {};
|
||||
#endif
|
||||
} // namespace mfem
|
||||
|
||||
|
||||
@@ -52,8 +52,6 @@ static void InterpolateLocal3DKernel(const double *const gf_in,
|
||||
double *const int_out,
|
||||
const int npt,
|
||||
const int ncomp,
|
||||
const int nel,
|
||||
const int gf_offset,
|
||||
double *gll1D,
|
||||
double *lagcoeff,
|
||||
const int pN = 0)
|
||||
@@ -84,9 +82,9 @@ static void InterpolateLocal3DKernel(const double *const gf_in,
|
||||
|
||||
for (int fld = 0; fld < Nfields; ++fld)
|
||||
{
|
||||
// If using GetNodalValues, ordering is NDOFSxNELxVDIM
|
||||
// const int elemOffset = el[i] * p_Np + fld * gf_offset;
|
||||
//if using R->Mult for L -> E-Vec use below.
|
||||
// If using GetNodalValues, ordering is NDOFS x NEL x VDIM and the
|
||||
// offset would be `el[i] * p_Np + fld * gf_offset`.
|
||||
// R->Mult produces element vectors in NDOFS x VDIM x NEL layout.
|
||||
const int elemOffset = el[i] * p_Np * Nfields + fld * p_Np;
|
||||
MFEM_FOREACH_THREAD(j,x,D1D)
|
||||
{
|
||||
@@ -125,37 +123,38 @@ void FindPointsGSLIB::InterpolateLocal3(const Vector &field_in,
|
||||
Vector &gsl_ref_l,
|
||||
Vector &field_out,
|
||||
int npt, int ncomp,
|
||||
int nel, int dof1Dsol)
|
||||
int dof1Dsol)
|
||||
{
|
||||
if (npt == 0) { return; }
|
||||
const int gf_offset = field_in.Size()/ncomp;
|
||||
auto pfin = field_in.Read();
|
||||
auto pgsle = gsl_elem_dev_l.ReadWrite();
|
||||
auto pgslr = gsl_ref_l.ReadWrite();
|
||||
auto pfout = field_out.Write();
|
||||
auto pgll = DEV.gll1d_sol.ReadWrite();
|
||||
auto plcf = DEV.lagcoeff_sol.ReadWrite();
|
||||
bool use_dev = field_in.UseDevice();
|
||||
auto pfin = field_in.Read(use_dev);
|
||||
auto pgsle = gsl_elem_dev_l.ReadWrite(use_dev);
|
||||
auto pgslr = gsl_ref_l.ReadWrite(use_dev);
|
||||
auto pfout = field_out.Write(use_dev);
|
||||
auto pgll = DEV.gll1d_sol.ReadWrite(use_dev);
|
||||
auto plcf = DEV.lagcoeff_sol.ReadWrite(use_dev);
|
||||
switch (dof1Dsol)
|
||||
{
|
||||
case 2: return InterpolateLocal3DKernel<2>(pfin, pgsle, pgslr, pfout,
|
||||
npt, ncomp, nel, gf_offset,
|
||||
npt, ncomp,
|
||||
pgll, plcf);
|
||||
case 3: return InterpolateLocal3DKernel<3>(pfin, pgsle, pgslr, pfout,
|
||||
npt, ncomp, nel, gf_offset,
|
||||
npt, ncomp,
|
||||
pgll, plcf);
|
||||
case 4: return InterpolateLocal3DKernel<4>(pfin, pgsle, pgslr, pfout,
|
||||
npt, ncomp, nel, gf_offset,
|
||||
npt, ncomp,
|
||||
pgll, plcf);
|
||||
case 5: return InterpolateLocal3DKernel<5>(pfin, pgsle, pgslr, pfout,
|
||||
npt, ncomp, nel, gf_offset,
|
||||
npt, ncomp,
|
||||
pgll, plcf);
|
||||
default: return InterpolateLocal3DKernel(pfin, pgsle, pgslr, pfout,
|
||||
npt, ncomp, nel, gf_offset,
|
||||
npt, ncomp,
|
||||
pgll, plcf, dof1Dsol);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
#undef MAXC
|
||||
#undef CODE_INTERNAL
|
||||
#undef CODE_BORDER
|
||||
#undef CODE_NOT_FOUND
|
||||
@@ -165,7 +164,7 @@ void FindPointsGSLIB::InterpolateLocal3(const Vector &field_in,
|
||||
Vector &gsl_ref_l,
|
||||
Vector &field_out,
|
||||
int npt, int ncomp,
|
||||
int nel, int dof1Dsol) {};
|
||||
int dof1Dsol) {};
|
||||
#endif
|
||||
} // namespace mfem
|
||||
|
||||
|
||||
@@ -91,15 +91,15 @@ void ElasticityAddMultPA(const int dim, const int nDofs,
|
||||
void ElasticityAssembleDiagonalPA(const int dim, const int nDofs,
|
||||
const CoefficientVector &lambda,
|
||||
const CoefficientVector &mu, const GeometricFactors &geom,
|
||||
const DofToQuad &maps, QuadratureFunction &QVec, Vector &diag)
|
||||
const DofToQuad &maps, const IntegrationRule &ir, Vector &diag)
|
||||
{
|
||||
switch (dim)
|
||||
{
|
||||
case 2:
|
||||
ElasticityAssembleDiagonalPA_<2>(nDofs, lambda, mu, geom, maps, QVec, diag);
|
||||
ElasticityAssembleDiagonalPA_<2>(nDofs, lambda, mu, geom, maps, ir, diag);
|
||||
break;
|
||||
case 3:
|
||||
ElasticityAssembleDiagonalPA_<3>(nDofs, lambda, mu, geom, maps, QVec, diag);
|
||||
ElasticityAssembleDiagonalPA_<3>(nDofs, lambda, mu, geom, maps, ir, diag);
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Only dimensions 2 and 3 supported.");
|
||||
|
||||
@@ -38,7 +38,6 @@
|
||||
#include "../../linalg/vector.hpp"
|
||||
#include "../../linalg/tensor.hpp"
|
||||
#include "../quadinterpolator.hpp"
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../coefficient.hpp"
|
||||
#include "../qfunction.hpp"
|
||||
|
||||
@@ -133,12 +132,12 @@ void ElasticityAssembleEA(const int dim, const int i_block, const int j_block,
|
||||
/// @param[in] mu Quadrature function for second Lame param.
|
||||
/// @param[in] geom Geometric factors corresponding to fespace.
|
||||
/// @param[in] maps DofToQuad maps for one element (assume elements all same).
|
||||
/// @param QVec Scratch Q-Vector. nQuad x dim x dim x dim x dim x numEls.
|
||||
/// @param[in] ir Integration rule.
|
||||
/// @param[out] diag diagonal of A. nDofs x dim x numEls.
|
||||
void ElasticityAssembleDiagonalPA(const int dim, const int nDofs,
|
||||
const CoefficientVector &lambda,
|
||||
const CoefficientVector &mu, const GeometricFactors &geom,
|
||||
const DofToQuad &maps, QuadratureFunction &QVec, Vector &diag);
|
||||
const DofToQuad &maps, const IntegrationRule &ir, Vector &diag);
|
||||
|
||||
/// Templated implementation of ElasticityAddMultPA.
|
||||
template<int dim, int i_block = -1, int j_block = -1>
|
||||
@@ -280,77 +279,62 @@ void ElasticityAddMultPA_(const int nDofs, const FiniteElementSpace &fespace,
|
||||
template<int dim>
|
||||
void ElasticityAssembleDiagonalPA_(const int nDofs,
|
||||
const CoefficientVector &lambda,
|
||||
const CoefficientVector &mu, const GeometricFactors &geom,
|
||||
const DofToQuad &maps, QuadratureFunction &QVec, Vector &diag)
|
||||
const CoefficientVector &mu,
|
||||
const GeometricFactors &geom,
|
||||
const DofToQuad &maps,
|
||||
const IntegrationRule &ir,
|
||||
Vector &diag)
|
||||
{
|
||||
using future::tensor;
|
||||
using future::make_tensor;
|
||||
using future::det;
|
||||
using future::inv;
|
||||
using future::make_tensor;
|
||||
using future::tensor;
|
||||
|
||||
// Assuming all elements are the same
|
||||
const auto &ir = QVec.GetIntRule(0);
|
||||
static constexpr int d = dim;
|
||||
const int numPoints = ir.GetNPoints();
|
||||
const int numEls = lambda.Size()/numPoints;
|
||||
const int numEls = lambda.Size() / numPoints;
|
||||
|
||||
const auto lamDev = Reshape(lambda.Read(), numPoints, numEls);
|
||||
const auto muDev = Reshape(mu.Read(), numPoints, numEls);
|
||||
const auto J = Reshape(geom.J.Read(), numPoints, d, d, numEls);
|
||||
auto Q = Reshape(QVec.ReadWrite(), numPoints, d,d, d, numEls);
|
||||
const real_t *ipWeights = ir.GetWeights().Read();
|
||||
mfem::forall_2D(numEls, numPoints,1, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(p, x,numPoints)
|
||||
{
|
||||
auto invJ = inv(make_tensor<d, d>(
|
||||
[&](int i, int j) { return J(p, i, j, e); }));
|
||||
const real_t w = ipWeights[p] /det(invJ);
|
||||
for (int n = 0; n < d; n++)
|
||||
{
|
||||
for (int m = 0; m < d; m++)
|
||||
{
|
||||
for (int q = 0; q < d; q++)
|
||||
{
|
||||
// compute contraction of 4*sym(grad(u))sym(grad(v)) term.
|
||||
// this contraction could be made slightly cheaper using Voigt
|
||||
// notation, but repeated entries are summed for simplicity.
|
||||
real_t contraction = 0.;
|
||||
for (int a = 0; a < d; a++)
|
||||
{
|
||||
for (int b = 0; b < d; b++)
|
||||
{
|
||||
contraction += ((a == q)*invJ(m,b) + (b==q)*invJ(m,a))*((a == q)
|
||||
*invJ(n, b) + (b==q)*invJ(n,a));
|
||||
}
|
||||
}
|
||||
// lambda*div(u)*div(v) + 2*mu*sym(grad(u))*sym(grad(v))
|
||||
// contraction = 4*sym(grad(u))sym(grad(v))
|
||||
Q(p,m,n,q,e) = w*(lamDev(p, e)*invJ(m,q)*invJ(n,q)
|
||||
+ 0.5*muDev(p, e)*contraction);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
|
||||
// Reduce quadrature function to an E-Vector
|
||||
const auto QRead = Reshape(QVec.Read(), numPoints, d, d, d, numEls);
|
||||
auto diagDev = Reshape(diag.Write(), nDofs, d, numEls);
|
||||
const auto G = Reshape(maps.G.Read(), numPoints, d, nDofs);
|
||||
auto diagDev = Reshape(diag.Write(), nDofs, d, numEls);
|
||||
|
||||
mfem::forall_2D(numEls, d, nDofs, [=] MFEM_HOST_DEVICE (int e)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(i, y, nDofs)
|
||||
MFEM_FOREACH_THREAD_DIRECT(i, y, nDofs)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q, x, d)
|
||||
MFEM_FOREACH_THREAD_DIRECT(q, x, d)
|
||||
{
|
||||
real_t sum = 0.;
|
||||
for (int n = 0; n < d; n++)
|
||||
real_t sum = 0.0;
|
||||
for (int p = 0; p < numPoints; p++)
|
||||
{
|
||||
for (int m = 0; m < d; m++)
|
||||
auto invJ = inv(make_tensor<d, d>([&](int r, int c) { return J(p, r, c, e); }));
|
||||
const real_t w = ipWeights[p] / det(invJ);
|
||||
|
||||
for (int n = 0; n < d; n++)
|
||||
{
|
||||
for (int p = 0; p < numPoints; p++ )
|
||||
for (int m = 0; m < d; m++)
|
||||
{
|
||||
sum += QRead(p,m,n,q,e)*G(p,m,i)*G(p,n,i);
|
||||
// compute contraction of 4*sym(grad(u))sym(grad(v)) term.
|
||||
// this contraction could be made slightly cheaper using Voigt
|
||||
// notation, but repeated entries are summed for simplicity.
|
||||
real_t contraction = 0.;
|
||||
for (int a = 0; a < d; a++)
|
||||
{
|
||||
for (int b = 0; b < d; b++)
|
||||
{
|
||||
contraction += ((a == q) * invJ(m, b) + (b == q) * invJ(m, a)) *
|
||||
((a == q) * invJ(n, b) + (b == q) * invJ(n, a));
|
||||
}
|
||||
}
|
||||
// lambda*div(u)*div(v) + 2*mu*sym(grad(u))*sym(grad(v))
|
||||
// contraction = 4*sym(grad(u))sym(grad(v))
|
||||
const real_t Q = w *
|
||||
(lamDev(p, e) * invJ(m, q) * invJ(n, q) + 0.5 * muDev(p, e) * contraction);
|
||||
sum += Q * G(p, m, i) * G(p, n, i);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -10,7 +10,6 @@
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include "../bilininteg.hpp"
|
||||
#include "../gridfunc.hpp"
|
||||
#include "../qfunction.hpp"
|
||||
#include "bilininteg_elasticity_kernels.hpp"
|
||||
|
||||
@@ -59,9 +58,8 @@ void ElasticityIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
|
||||
void ElasticityIntegrator::AssembleDiagonalPA(Vector &diag)
|
||||
{
|
||||
q_vec->SetVDim(vdim*vdim*vdim*vdim);
|
||||
internal::ElasticityAssembleDiagonalPA(vdim, ndofs, *lambda_quad, *mu_quad,
|
||||
*geom, *maps, *q_vec, diag);
|
||||
*geom, *maps, *IntRule, diag);
|
||||
}
|
||||
|
||||
void ElasticityIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
|
||||
@@ -197,15 +197,21 @@ static void EAHdivAssemble3D(const int NE,
|
||||
// Assemble (one row per thread)
|
||||
MFEM_FOREACH_THREAD(idx_i, x, NDOF)
|
||||
{
|
||||
// NOTE: due to an llvm backend bug, usage of the modulus operator
|
||||
// has been removed from this foreach section.
|
||||
const int ic = idx_i / NDOF_C;
|
||||
const int idx_ii = idx_i % NDOF_C;
|
||||
const int idx_ii = idx_i - ic * NDOF_C; // idx_i % NDOF_C
|
||||
|
||||
const int nx_i = (ic == 0) ? D1D : D1D-1;
|
||||
const int ny_i = (ic == 1) ? D1D : D1D-1;
|
||||
|
||||
const int ix = idx_ii % nx_i;
|
||||
const int iy = (idx_ii / nx_i) % ny_i;
|
||||
const int iz = (idx_ii / nx_i) / ny_i;
|
||||
const int qx_i = idx_ii / nx_i;
|
||||
const int ix = idx_ii - qx_i * nx_i; // idx_ii % nx_i
|
||||
|
||||
const int qy_i = qx_i / ny_i;
|
||||
const int iy = qx_i - qy_i * ny_i; // (idx_ii / nx_i) % ny_i
|
||||
|
||||
const int iz = qy_i; // (idx_ii / nx_i) / ny_i
|
||||
|
||||
const real_t (&Bi1)[MQ1][MD1] = (ic == 0) ? r_Bc : r_Bo;
|
||||
const real_t (&Bi2)[MQ1][MD1] = (ic == 1) ? r_Bc : r_Bo;
|
||||
@@ -214,14 +220,18 @@ static void EAHdivAssemble3D(const int NE,
|
||||
for (int idx_j = 0; idx_j < NDOF; ++idx_j)
|
||||
{
|
||||
const int jc = idx_j / NDOF_C;
|
||||
const int idx_jj = idx_j % NDOF_C;
|
||||
const int idx_jj = idx_j - jc * NDOF_C; // idx_j % NDOF_C
|
||||
|
||||
const int nx_j = (jc == 0) ? D1D : D1D-1;
|
||||
const int ny_j = (jc == 1) ? D1D : D1D-1;
|
||||
|
||||
const int jx = idx_jj % nx_j;
|
||||
const int jy = (idx_jj / nx_j) % ny_j;
|
||||
const int jz = (idx_jj / nx_j) / ny_j;
|
||||
const int qx_j = idx_jj / nx_j;
|
||||
const int jx = idx_jj - qx_j * nx_j; // idx_jj % nx_j
|
||||
|
||||
const int qy_j = qx_j / ny_j;
|
||||
const int jy = qx_j - qy_j * ny_j; // (idx_jj / nx_j) % ny_j
|
||||
|
||||
const int jz = qy_j; // (idx_jj / nx_j) / ny_j
|
||||
|
||||
const real_t (&Bj1)[MQ1][MD1] = (jc == 0) ? r_Bc : r_Bo;
|
||||
const real_t (&Bj2)[MQ1][MD1] = (jc == 1) ? r_Bc : r_Bo;
|
||||
|
||||
@@ -181,6 +181,12 @@ constexpr int NBZ(int D1D)
|
||||
{
|
||||
return ipow(2, D(D1D) >= 0 ? D(D1D) : 0);
|
||||
}
|
||||
constexpr int NBZ3D(int MDQ)
|
||||
{
|
||||
return MDQ > 0 ? std::min<int>(
|
||||
(128 + MDQ * MDQ * MDQ - 1) / (MDQ * MDQ * MDQ), 64)
|
||||
: 1;
|
||||
}
|
||||
}
|
||||
|
||||
// Shared memory PA Mass Diagonal 2D kernel
|
||||
@@ -804,19 +810,23 @@ void PAMassApply3D_Element(const int e,
|
||||
}
|
||||
}
|
||||
|
||||
template<int T_D1D, int T_Q1D, bool ACCUMULATE = true>
|
||||
MFEM_HOST_DEVICE inline
|
||||
void SmemPAMassApply3D_Element(const int e,
|
||||
const int NE,
|
||||
const real_t *b_,
|
||||
const real_t *d_,
|
||||
const real_t *x_,
|
||||
real_t *y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
template <int T_D1D, int T_Q1D, int TBATCH, bool ACCUMULATE = true>
|
||||
MFEM_HOST_DEVICE inline void
|
||||
SmemPAMassApply3D_Element(const int e, const int NE, const real_t *b_,
|
||||
const real_t *d_, const real_t *x_, real_t *y_,
|
||||
int d1d = 0, int q1d = 0)
|
||||
{
|
||||
constexpr int D1D = T_D1D ? T_D1D : d1d;
|
||||
constexpr int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
static_assert(TBATCH > 0, "TBATCH must be positive");
|
||||
#if defined(__CUDA_ARCH__) || defined(__HIP_DEVICE_COMPILE__)
|
||||
constexpr int tbatch = TBATCH;
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
#else
|
||||
// host always batch size 1
|
||||
constexpr int tbatch = 1;
|
||||
constexpr int tidz = 0;
|
||||
#endif
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
@@ -829,33 +839,37 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
MFEM_SHARED real_t sDQ[MQ1*MD1];
|
||||
real_t (*B)[MD1] = (real_t (*)[MD1]) sDQ;
|
||||
real_t (*Bt)[MQ1] = (real_t (*)[MQ1]) sDQ;
|
||||
MFEM_SHARED real_t sm0[MDQ*MDQ*MDQ];
|
||||
MFEM_SHARED real_t sm1[MDQ*MDQ*MDQ];
|
||||
real_t (*X)[MD1][MD1] = (real_t (*)[MD1][MD1]) sm0;
|
||||
real_t (*DDQ)[MD1][MQ1] = (real_t (*)[MD1][MQ1]) sm1;
|
||||
real_t (*DQQ)[MQ1][MQ1] = (real_t (*)[MQ1][MQ1]) sm0;
|
||||
real_t (*QQQ)[MQ1][MQ1] = (real_t (*)[MQ1][MQ1]) sm1;
|
||||
real_t (*QQD)[MQ1][MD1] = (real_t (*)[MQ1][MD1]) sm0;
|
||||
real_t (*QDD)[MD1][MD1] = (real_t (*)[MD1][MD1]) sm1;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_SHARED real_t sm0[tbatch][MDQ*MDQ*MDQ];
|
||||
MFEM_SHARED real_t sm1[tbatch][MDQ*MDQ*MDQ];
|
||||
real_t (*X)[MD1][MD1] = (real_t (*)[MD1][MD1]) (sm0+tidz);
|
||||
real_t (*DDQ)[MD1][MQ1] = (real_t (*)[MD1][MQ1]) (sm1+tidz);
|
||||
real_t (*DQQ)[MQ1][MQ1] = (real_t (*)[MQ1][MQ1]) (sm0+tidz);
|
||||
real_t (*QQQ)[MQ1][MQ1] = (real_t (*)[MQ1][MQ1]) (sm1+tidz);
|
||||
real_t (*QQD)[MQ1][MD1] = (real_t (*)[MQ1][MD1]) (sm0+tidz);
|
||||
real_t (*QDD)[MD1][MD1] = (real_t (*)[MD1][MD1]) (sm1+tidz);
|
||||
MFEM_FOREACH_THREAD(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD(dx, x, D1D)
|
||||
{
|
||||
MFEM_UNROLL(MD1)
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
X[dz][dy][dx] = x(dx,dy,dz,e);
|
||||
X[dz][dy][dx] = x(dx, dy, dz, e);
|
||||
}
|
||||
}
|
||||
MFEM_FOREACH_THREAD(dx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(dx, x, Q1D) { B[dx][dy] = b(dx, dy); }
|
||||
}
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy, y, D1D)
|
||||
{
|
||||
B[dx][dy] = b(dx,dy);
|
||||
MFEM_FOREACH_THREAD(dx, x, Q1D) { B[dx][dy] = b(dx, dy); }
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(qx, x, Q1D)
|
||||
{
|
||||
real_t u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
@@ -880,9 +894,9 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
MFEM_FOREACH_THREAD(qy, y, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(qx, x, Q1D)
|
||||
{
|
||||
real_t u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
@@ -907,9 +921,9 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
MFEM_FOREACH_THREAD(qy, y, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(qx, x, Q1D)
|
||||
{
|
||||
real_t u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
@@ -929,22 +943,22 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
MFEM_UNROLL(MQ1)
|
||||
for (int qz = 0; qz < Q1D; qz++)
|
||||
{
|
||||
QQQ[qz][qy][qx] = u[qz] * d(qx,qy,qz,e);
|
||||
QQQ[qz][qy][qx] = u[qz] * d(qx, qy, qz, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(di,y,D1D)
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
MFEM_FOREACH_THREAD(di, y, D1D)
|
||||
{
|
||||
Bt[di][q] = b(q,di);
|
||||
MFEM_FOREACH_THREAD(q, x, Q1D) { Bt[di][q] = b(q, di); }
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
MFEM_FOREACH_THREAD(qy, y, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD(dx, x, D1D)
|
||||
{
|
||||
real_t u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
@@ -969,9 +983,9 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD(dx, x, D1D)
|
||||
{
|
||||
real_t u[Q1D];
|
||||
MFEM_UNROLL(MQ1)
|
||||
@@ -996,9 +1010,9 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
MFEM_FOREACH_THREAD(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
MFEM_FOREACH_THREAD(dx, x, D1D)
|
||||
{
|
||||
real_t u[D1D];
|
||||
MFEM_UNROLL(MD1)
|
||||
@@ -1020,11 +1034,11 @@ void SmemPAMassApply3D_Element(const int e,
|
||||
{
|
||||
if (ACCUMULATE)
|
||||
{
|
||||
y(dx,dy,dz,e) += u[dz];
|
||||
y(dx, dy, dz, e) += u[dz];
|
||||
}
|
||||
else
|
||||
{
|
||||
y(dx,dy,dz,e) = u[dz];
|
||||
y(dx, dy, dz, e) = u[dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1115,8 +1129,8 @@ inline void PAMassApply3D(const int NE,
|
||||
});
|
||||
}
|
||||
|
||||
// Shared memory PA Mass Apply 2D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0>
|
||||
// Shared memory PA Mass Apply 3D kernel
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int TBATCH=1>
|
||||
inline void SmemPAMassApply3D(const int NE,
|
||||
const Array<real_t> &b_,
|
||||
const Array<real_t> &bt_,
|
||||
@@ -1126,6 +1140,9 @@ inline void SmemPAMassApply3D(const int NE,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
static_assert(T_D1D > 0, "T_D1D must be positive");
|
||||
static_assert(T_Q1D > 0, "T_Q1D must be positive");
|
||||
static_assert(TBATCH > 0, "TBATCH must be positive");
|
||||
MFEM_CONTRACT_VAR(bt_);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
@@ -1137,9 +1154,11 @@ inline void SmemPAMassApply3D(const int NE,
|
||||
const auto d = d_.Read();
|
||||
const auto x = x_.Read();
|
||||
auto y = y_.ReadWrite();
|
||||
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
|
||||
mfem::forall_2D_batch<T_Q1D * T_Q1D * TBATCH>(NE, Q1D, Q1D, TBATCH,
|
||||
[=] MFEM_HOST_DEVICE(int e)
|
||||
{
|
||||
internal::SmemPAMassApply3D_Element<T_D1D,T_Q1D>(e, NE, b, d, x, y, d1d, q1d);
|
||||
internal::SmemPAMassApply3D_Element<T_D1D, T_Q1D, TBATCH>(e, NE, b, d, x,
|
||||
y, d1d, q1d);
|
||||
});
|
||||
}
|
||||
|
||||
@@ -1394,7 +1413,16 @@ ApplyKernelType MassIntegrator::ApplyPAKernels::Kernel()
|
||||
{
|
||||
if constexpr (DIM == 1) { return internal::PAMassApply1D; }
|
||||
else if constexpr (DIM == 2) { return internal::SmemPAMassApply2D<T_D1D,T_Q1D>; }
|
||||
else if constexpr (DIM == 3) { return internal::SmemPAMassApply3D<T_D1D, T_Q1D>; }
|
||||
else if constexpr (DIM == 3)
|
||||
{
|
||||
constexpr int MDQ = T_D1D >= T_Q1D ? T_D1D : T_Q1D;
|
||||
// max 64 threads in z limit in cuda and hip
|
||||
if constexpr (MDQ > 0)
|
||||
{
|
||||
return internal::SmemPAMassApply3D<T_D1D, T_Q1D,
|
||||
internal::mass::NBZ3D(MDQ)>;
|
||||
}
|
||||
}
|
||||
MFEM_ABORT("");
|
||||
}
|
||||
|
||||
|
||||
+323
-834
File diff suppressed because it is too large
Load Diff
@@ -205,157 +205,40 @@ void VectorMassIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
|
||||
}
|
||||
|
||||
template <const int T_D1D = 0, const int T_Q1D = 0>
|
||||
static void PAVectorMassAssembleDiagonal2D(const int NE,
|
||||
const Array<real_t> &b,
|
||||
const Vector &pa_data, Vector &diag,
|
||||
const int d1d = 0, const int q1d = 0)
|
||||
{
|
||||
constexpr int VDIM = 2;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
const auto B = Reshape(b.Read(), Q1D, D1D);
|
||||
const auto D = Reshape(pa_data.Read(), Q1D, Q1D, NE);
|
||||
auto Y = Reshape(diag.ReadWrite(), D1D, D1D, VDIM, NE);
|
||||
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE(int e)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
|
||||
real_t temp[max_Q1D][max_D1D];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
temp[qx][dy] = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
temp[qx][dy] += B(qy, dy) * B(qy, dy) * D(qx, qy, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
real_t temp1 = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
temp1 += B(qx, dx) * B(qx, dx) * temp[qx][dy];
|
||||
}
|
||||
Y(dx, dy, 0, e) = temp1;
|
||||
Y(dx, dy, 1, e) = temp1;
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template <const int T_D1D = 0, const int T_Q1D = 0>
|
||||
static void PAVectorMassAssembleDiagonal3D(const int NE,
|
||||
const Array<real_t> &B_,
|
||||
const Vector &pa_data, Vector &diag,
|
||||
const int d1d = 0, const int q1d = 0)
|
||||
{
|
||||
constexpr int VDIM = 3;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
const auto B = Reshape(B_.Read(), Q1D, D1D);
|
||||
MFEM_VERIFY(pa_data.Size() == Q1D * Q1D * Q1D * NE, "pa_data size error");
|
||||
const auto D = Reshape(pa_data.Read(), Q1D, Q1D, Q1D, NE);
|
||||
auto Y = Reshape(diag.ReadWrite(), D1D, D1D, D1D, VDIM, NE);
|
||||
mfem::forall(NE, [=] MFEM_HOST_DEVICE(int e)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : DofQuadLimits::MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : DofQuadLimits::MAX_Q1D;
|
||||
|
||||
real_t temp[max_Q1D][max_Q1D][max_D1D];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
temp[qx][qy][dz] = 0.0;
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
temp[qx][qy][dz] +=
|
||||
B(qz, dz) * B(qz, dz) * D(qx, qy, qz, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
real_t temp2[max_Q1D][max_D1D][max_D1D];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
temp2[qx][dy][dz] = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
temp2[qx][dy][dz] +=
|
||||
B(qy, dy) * B(qy, dy) * temp[qx][qy][dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
real_t temp3 = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
temp3 += B(qx, dx) * B(qx, dx) * temp2[qx][dy][dz];
|
||||
}
|
||||
Y(dx, dy, dz, 0, e) = temp3;
|
||||
Y(dx, dy, dz, 1, e) = temp3;
|
||||
Y(dx, dy, dz, 2, e) = temp3;
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
static void PAVectorMassAssembleDiagonal(const int dim, const int D1D,
|
||||
const int Q1D, const int NE,
|
||||
const Array<real_t> &B,
|
||||
const Vector &pa_data,
|
||||
Vector &diag)
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
return PAVectorMassAssembleDiagonal2D(NE, B, pa_data, diag, D1D, Q1D);
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
return PAVectorMassAssembleDiagonal3D(NE, B, pa_data, diag, D1D, Q1D);
|
||||
}
|
||||
MFEM_ABORT("Dimension not implemented.");
|
||||
}
|
||||
|
||||
void VectorMassIntegrator::AssembleDiagonalPA(Vector &diag)
|
||||
{
|
||||
if (DeviceCanUseCeed()) { ceedOp->GetDiagonal(diag); }
|
||||
else
|
||||
{
|
||||
MFEM_VERIFY(coeff_vdim == 1, "coeff_vdim != 1");
|
||||
MFEM_VERIFY(!VQ && !MQ, "VQ and MQ not supported");
|
||||
PAVectorMassAssembleDiagonal(dim, dofs1D, quad1D, ne, maps->B, pa_data, diag);
|
||||
}
|
||||
if (DeviceCanUseCeed()) { return ceedOp->GetDiagonal(diag); }
|
||||
|
||||
MFEM_VERIFY(coeff_vdim == 1, "coeff_vdim != 1");
|
||||
MFEM_VERIFY(!VQ && !MQ, "VQ and MQ not supported");
|
||||
|
||||
// Add the VectorMassAssembleDiagonalPA specializations
|
||||
static const auto vector_mass_assemble_diagonal_kernel_specializations =
|
||||
( // 2D
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<2, 2>::Add(),
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<2, 3>::Add(),
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<2, 4>::Add(),
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<2, 5>::Add(),
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<2, 6>::Add(),
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<2, 7>::Add(),
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<2, 8>::Add(),
|
||||
// 3D
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<3, 2>::Add(),
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<3, 3>::Add(),
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<3, 4>::Add(),
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<3, 5>::Add(),
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<3, 6>::Add(),
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<3, 7>::Add(),
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Specialization<3, 8>::Add(),
|
||||
true);
|
||||
MFEM_CONTRACT_VAR(vector_mass_assemble_diagonal_kernel_specializations);
|
||||
|
||||
VectorMassAssembleDiagonalPA::Run(dim, quad1D, // templated arguments
|
||||
ne, dofs1D, quad1D,
|
||||
maps->B.Read(),
|
||||
pa_data.Read(),
|
||||
diag.ReadWrite());
|
||||
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -176,8 +176,145 @@ void SmemPAVectorMassApply3D(const int NE,
|
||||
});
|
||||
}
|
||||
|
||||
template <int T_Q1D = 0, int T_MDQ = 16>
|
||||
static void SmemPAVectorMassAssembleDiagonal2D(const int ne,
|
||||
const int d1d,
|
||||
const int q1d,
|
||||
const real_t *b_r,
|
||||
const real_t *d_r,
|
||||
real_t *y_rw)
|
||||
{
|
||||
constexpr int VDIM = 2;
|
||||
|
||||
const int D1D = d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
MFEM_VERIFY(Q1D <= T_MDQ && D1D <= Q1D, "");
|
||||
|
||||
const auto B = Reshape(b_r, Q1D, D1D);
|
||||
const auto D = Reshape(d_r, Q1D, Q1D, ne);
|
||||
auto Y = Reshape(y_rw, D1D, D1D, VDIM, ne);
|
||||
|
||||
mfem::forall_2D<T_Q1D*T_Q1D>(
|
||||
ne, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
|
||||
{
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : T_MDQ;
|
||||
|
||||
MFEM_SHARED real_t sm[MQ1][MQ1];
|
||||
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx, x, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy, y, D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
u += B(qy, dy) * B(qy, dy) * D(qx, qy, e);
|
||||
}
|
||||
sm[qx][dy] = u;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(dx, x, D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
u += B(qx, dx) * B(qx, dx) * sm[qx][dy];
|
||||
}
|
||||
Y(dx, dy, 0, e) = u;
|
||||
Y(dx, dy, 1, e) = u;
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template <int T_Q1D = 0, int T_MDQ = 12>
|
||||
static void SmemPAVectorMassAssembleDiagonal3D(const int ne,
|
||||
const int d1d,
|
||||
const int q1d,
|
||||
const real_t *b_r,
|
||||
const real_t *d_r,
|
||||
real_t *y_rw)
|
||||
{
|
||||
constexpr int VDIM = 3;
|
||||
|
||||
const int D1D = d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
MFEM_VERIFY(Q1D <= T_MDQ && D1D <= Q1D, "");
|
||||
|
||||
const auto B = Reshape(b_r, Q1D, D1D);
|
||||
const auto D = Reshape(d_r, Q1D, Q1D, Q1D, ne);
|
||||
auto Y = Reshape(y_rw, D1D, D1D, D1D, VDIM, ne);
|
||||
|
||||
mfem::forall_3D<T_Q1D*T_Q1D*T_Q1D>(
|
||||
ne, Q1D, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
|
||||
{
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : T_MDQ;
|
||||
|
||||
MFEM_SHARED real_t sm[2][MQ1][MQ1][MQ1];
|
||||
|
||||
MFEM_FOREACH_THREAD_DIRECT(dz, z, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(qy, y, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx, x, Q1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u += B(qz, dz) * B(qz, dz) * D(qx, qy, qz, e);
|
||||
}
|
||||
sm[0][dz][qy][qx] = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD_DIRECT(dz, z, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx, x, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy, y, D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
u += B(qy, dy) * B(qy, dy) * sm[0][dz][qy][qx];
|
||||
}
|
||||
sm[1][dz][dy][qx] = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD_DIRECT(dz, z, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(dx, x, D1D)
|
||||
{
|
||||
real_t u = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
u += B(qx, dx) * B(qx, dx) * sm[1][dz][dy][qx];
|
||||
}
|
||||
Y(dx, dy, dz, 0, e) = u;
|
||||
Y(dx, dy, dz, 1, e) = u;
|
||||
Y(dx, dy, dz, 2, e) = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
} // namespace internal
|
||||
|
||||
// AddMultPA kernels
|
||||
template<int DIM, int T_D1D, int T_Q1D>
|
||||
VectorMassIntegrator::VectorMassAddMultPAType
|
||||
VectorMassIntegrator::VectorMassAddMultPA::Kernel()
|
||||
@@ -190,11 +327,11 @@ VectorMassIntegrator::VectorMassAddMultPA::Kernel()
|
||||
{
|
||||
return internal::SmemPAVectorMassApply3D<T_D1D, T_Q1D>;
|
||||
}
|
||||
MFEM_ABORT("Unsupported kernel");
|
||||
else { MFEM_ABORT("Unsupported kernel"); }
|
||||
}
|
||||
|
||||
inline VectorMassIntegrator::VectorMassAddMultPAType
|
||||
VectorMassIntegrator::VectorMassAddMultPA::Fallback(int dim, int d1d, int q1d)
|
||||
VectorMassIntegrator::VectorMassAddMultPA::Fallback(int dim, int, int)
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
@@ -207,6 +344,36 @@ VectorMassIntegrator::VectorMassAddMultPA::Fallback(int dim, int d1d, int q1d)
|
||||
else { MFEM_ABORT("Unsupported kernel"); }
|
||||
}
|
||||
|
||||
// DiagonalPA kernels
|
||||
template<int DIM, int T_Q1D>
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPAType
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Kernel()
|
||||
{
|
||||
if constexpr (DIM == 2)
|
||||
{
|
||||
return internal::SmemPAVectorMassAssembleDiagonal2D<T_Q1D>;
|
||||
}
|
||||
else if constexpr (DIM == 3)
|
||||
{
|
||||
return internal::SmemPAVectorMassAssembleDiagonal3D<T_Q1D>;
|
||||
}
|
||||
else { MFEM_ABORT("Unsupported kernel"); }
|
||||
}
|
||||
|
||||
inline VectorMassIntegrator::VectorMassAssembleDiagonalPAType
|
||||
VectorMassIntegrator::VectorMassAssembleDiagonalPA::Fallback(int dim, int)
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
return internal::SmemPAVectorMassAssembleDiagonal2D;
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
return internal::SmemPAVectorMassAssembleDiagonal3D;
|
||||
}
|
||||
else { MFEM_ABORT("Unsupported kernel"); }
|
||||
}
|
||||
|
||||
/// \endcond DO_NOT_DOCUMENT
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,351 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include <utility>
|
||||
|
||||
#include "../kernels.hpp"
|
||||
#include "../nonlininteg.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int T_MDQ = 16>
|
||||
static void SmemPAConvectionNLGradDiagonal2D(const int NE,
|
||||
const real_t *b,
|
||||
const real_t *g,
|
||||
const real_t *a,
|
||||
const real_t *u,
|
||||
real_t *de,
|
||||
const int d1d,
|
||||
const int q1d)
|
||||
{
|
||||
static constexpr int VDIM = 2, DIM = 2;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
const auto A = Reshape(a, VDIM, DIM, Q1D, Q1D, NE);
|
||||
const auto U = Reshape(u, D1D, D1D, VDIM, NE);
|
||||
auto D = Reshape(de, D1D, D1D, VDIM, NE);
|
||||
|
||||
mfem::forall_2D<T_Q1D * T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
|
||||
{
|
||||
constexpr int MD1 = T_D1D ? T_D1D : T_MDQ;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : T_MDQ;
|
||||
|
||||
MFEM_SHARED real_t sM[3][MQ1][MQ1], sQ[3][MQ1][MQ1];
|
||||
MFEM_SHARED real_t sB[MD1][MQ1], sG[MD1][MQ1];
|
||||
|
||||
kernels::internal::v_regs2d_t<VDIM, MQ1> r0, r1;
|
||||
kernels::internal::vd_regs2d_t<VDIM, DIM, MQ1> g0, g1;
|
||||
|
||||
kernels::internal::LoadMatrix(D1D, Q1D, b, sB);
|
||||
kernels::internal::LoadMatrix(D1D, Q1D, g, sG);
|
||||
|
||||
kernels::internal::LoadDofs2d(e, D1D, U, r0);
|
||||
kernels::internal::Eval2d(D1D, Q1D, sM[0], sB, r0, r1);
|
||||
|
||||
kernels::internal::LoadDofs2d(e, D1D, U, g0);
|
||||
kernels::internal::Grad2d(D1D, Q1D, sM[0], sB, sG, g0, g1);
|
||||
|
||||
for (int v = 0; v < VDIM; ++v)
|
||||
{
|
||||
future::tensor<real_t, VDIM> e_v = {};
|
||||
e_v[v] = real_t(1);
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx, x, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(qy, y, Q1D)
|
||||
{
|
||||
const future::tensor<real_t, VDIM> u_val =
|
||||
{
|
||||
r1[0][qy][qx], r1[1][qy][qx]
|
||||
};
|
||||
const future::tensor<real_t, VDIM, DIM> Q_adj =
|
||||
{
|
||||
{ { A(0, 0, qx, qy, e), A(1, 0, qx, qy, e) },
|
||||
{ A(0, 1, qx, qy, e), A(1, 1, qx, qy, e) }
|
||||
}
|
||||
};
|
||||
const future::tensor<real_t, VDIM, DIM> grad_U =
|
||||
{
|
||||
{ { g1[0][0][qy][qx], g1[1][0][qy][qx] },
|
||||
{ g1[0][1][qy][qx], g1[1][1][qy][qx] }
|
||||
}
|
||||
};
|
||||
const auto one = Q_adj * u_val;
|
||||
const auto two = transpose(grad_U) * (Q_adj * e_v);
|
||||
sQ[0][qx][qy] = one[0];
|
||||
sQ[1][qx][qy] = one[1];
|
||||
sQ[2][qx][qy] = two[v];
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx, x, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy, y, D1D)
|
||||
{
|
||||
real_t s[3] = {};
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const real_t By = sB[dy][qy], Gy = sG[dy][qy];
|
||||
s[0] += By * By * sQ[0][qx][qy];
|
||||
s[1] += Gy * By * sQ[1][qx][qy];
|
||||
s[2] += By * By * sQ[2][qx][qy];
|
||||
}
|
||||
sM[0][qx][dy] = s[0];
|
||||
sM[1][qx][dy] = s[1];
|
||||
sM[2][qx][dy] = s[2];
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(dx, x, D1D)
|
||||
{
|
||||
real_t d = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const real_t Bx = sB[dx][qx], Gx = sG[dx][qx];
|
||||
d += Gx * Bx * sM[0][qx][dy] +
|
||||
Bx * Bx * sM[1][qx][dy] +
|
||||
Bx * Bx * sM[2][qx][dy];
|
||||
}
|
||||
D(dx, dy, v, e) += d;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int T_MDQ = 16>
|
||||
static void SmemPAConvectionNLGradDiagonal3D(const int NE,
|
||||
const real_t *b,
|
||||
const real_t *g,
|
||||
const real_t *a,
|
||||
const real_t *u,
|
||||
real_t *de,
|
||||
const int d1d,
|
||||
const int q1d)
|
||||
{
|
||||
static constexpr int VDIM = 3, DIM = 3;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
const auto A = Reshape(a, VDIM, DIM, Q1D, Q1D, Q1D, NE);
|
||||
const auto U = Reshape(u, D1D, D1D, D1D, VDIM, NE);
|
||||
auto D = Reshape(de, D1D, D1D, D1D, VDIM, NE);
|
||||
|
||||
mfem::forall_2D<T_Q1D * T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
|
||||
{
|
||||
constexpr int MD1 = T_D1D ? T_D1D : T_MDQ;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : T_MDQ;
|
||||
|
||||
MFEM_SHARED real_t sM[4][MQ1][MQ1], sQ[4][MQ1][MQ1];
|
||||
MFEM_SHARED real_t sB[MD1][MQ1], sG[MD1][MQ1];
|
||||
|
||||
kernels::internal::v_regs3d_t<VDIM, MQ1> r0, r1;
|
||||
kernels::internal::vd_regs3d_t<VDIM, DIM, MQ1> g0, g1;
|
||||
|
||||
kernels::internal::LoadMatrix(D1D, Q1D, b, sB);
|
||||
kernels::internal::LoadMatrix(D1D, Q1D, g, sG);
|
||||
|
||||
kernels::internal::LoadDofs3d(e, D1D, U, r0);
|
||||
kernels::internal::Eval3d(D1D, Q1D, sM[0], sB, r0, r1);
|
||||
|
||||
kernels::internal::LoadDofs3d(e, D1D, U, g0);
|
||||
kernels::internal::Grad3d(D1D, Q1D, sM[0], sB, sG, g0, g1);
|
||||
|
||||
for (int v = 0; v < VDIM; ++v)
|
||||
{
|
||||
future::tensor<real_t, VDIM> e_v = {};
|
||||
e_v[v] = real_t(1);
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(qy, y, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx, x, Q1D)
|
||||
{
|
||||
real_t s[4] = {};
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
const future::tensor<real_t, VDIM> u_val =
|
||||
{
|
||||
r1[0][qz][qy][qx], r1[1][qz][qy][qx], r1[2][qz][qy][qx]
|
||||
};
|
||||
const future::tensor<real_t, VDIM, DIM> Q_adj = {{
|
||||
{A(0,0,qx,qy,qz,e), A(1,0,qx,qy,qz,e), A(2,0,qx,qy,qz,e)},
|
||||
{A(0,1,qx,qy,qz,e), A(1,1,qx,qy,qz,e), A(2,1,qx,qy,qz,e)},
|
||||
{A(0,2,qx,qy,qz,e), A(1,2,qx,qy,qz,e), A(2,2,qx,qy,qz,e)}
|
||||
}
|
||||
};
|
||||
const future::tensor<real_t, VDIM, DIM> grad_U = {{
|
||||
{g1[0][0][qz][qy][qx], g1[1][0][qz][qy][qx], g1[2][0][qz][qy][qx]},
|
||||
{g1[0][1][qz][qy][qx], g1[1][1][qz][qy][qx], g1[2][1][qz][qy][qx]},
|
||||
{g1[0][2][qz][qy][qx], g1[1][2][qz][qy][qx], g1[2][2][qz][qy][qx]}
|
||||
}
|
||||
};
|
||||
const auto one = Q_adj * u_val;
|
||||
const auto two = transpose(grad_U) * (Q_adj * e_v);
|
||||
|
||||
const real_t Bz = sB[dz][qz], Gz = sG[dz][qz];
|
||||
s[0] += one[0] * Bz * Bz;
|
||||
s[1] += one[1] * Bz * Bz;
|
||||
s[2] += one[2] * Bz * Gz;
|
||||
s[3] += two[v] * Bz * Bz;
|
||||
}
|
||||
sQ[0][qx][qy] = s[0];
|
||||
sQ[1][qx][qy] = s[1];
|
||||
sQ[2][qx][qy] = s[2];
|
||||
sQ[3][qx][qy] = s[3];
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx, x, Q1D)
|
||||
{
|
||||
real_t s[4] = {};
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const real_t By = sB[dy][qy], Gy = sG[dy][qy];
|
||||
s[0] += By * By * sQ[0][qx][qy];
|
||||
s[1] += Gy * By * sQ[1][qx][qy];
|
||||
s[2] += By * By * sQ[2][qx][qy];
|
||||
s[3] += By * By * sQ[3][qx][qy];
|
||||
}
|
||||
sM[0][dy][qx] = s[0];
|
||||
sM[1][dy][qx] = s[1];
|
||||
sM[2][dy][qx] = s[2];
|
||||
sM[3][dy][qx] = s[3];
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(dx, x, D1D)
|
||||
{
|
||||
real_t d = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const real_t Bx = sB[dx][qx], Gx = sG[dx][qx];
|
||||
d += Gx * Bx * sM[0][dy][qx];
|
||||
d += Bx * Bx * sM[1][dy][qx];
|
||||
d += Bx * Bx * sM[2][dy][qx];
|
||||
d += Bx * Bx * sM[3][dy][qx];
|
||||
}
|
||||
D(dx, dy, dz, v, e) += d;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void VectorConvectionNLFIntegrator::AssembleGradDiagonalPA(Vector &de) const
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
if (static auto ini = false; !std::exchange(ini, true))
|
||||
{
|
||||
VectorConvectionNLFGradDiagPA2D::Specialization<2, 2>::Add();
|
||||
VectorConvectionNLFGradDiagPA2D::Specialization<2, 3>::Add();
|
||||
VectorConvectionNLFGradDiagPA2D::Specialization<3, 4>::Add();
|
||||
VectorConvectionNLFGradDiagPA2D::Specialization<3, 5>::Add();
|
||||
VectorConvectionNLFGradDiagPA2D::Specialization<4, 5>::Add();
|
||||
VectorConvectionNLFGradDiagPA2D::Specialization<4, 6>::Add();
|
||||
VectorConvectionNLFGradDiagPA2D::Specialization<5, 7>::Add();
|
||||
VectorConvectionNLFGradDiagPA2D::Specialization<5, 8>::Add();
|
||||
}
|
||||
VectorConvectionNLFGradDiagPA2D::Run(d1d, q1d, ne,
|
||||
maps->B.Read(),
|
||||
maps->G.Read(),
|
||||
pa_adj.Read(),
|
||||
pa_u.Read(),
|
||||
de.ReadWrite(),
|
||||
d1d, q1d);
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
if (static auto ini = false; !std::exchange(ini, true))
|
||||
{
|
||||
VectorConvectionNLFGradDiagPA3D::Specialization<2, 3>::Add();
|
||||
VectorConvectionNLFGradDiagPA3D::Specialization<2, 4>::Add();
|
||||
VectorConvectionNLFGradDiagPA3D::Specialization<2, 5>::Add();
|
||||
VectorConvectionNLFGradDiagPA3D::Specialization<3, 4>::Add();
|
||||
VectorConvectionNLFGradDiagPA3D::Specialization<3, 5>::Add();
|
||||
VectorConvectionNLFGradDiagPA3D::Specialization<3, 6>::Add();
|
||||
VectorConvectionNLFGradDiagPA3D::Specialization<4, 6>::Add();
|
||||
VectorConvectionNLFGradDiagPA3D::Specialization<4, 7>::Add();
|
||||
VectorConvectionNLFGradDiagPA3D::Specialization<4, 8>::Add();
|
||||
VectorConvectionNLFGradDiagPA3D::Specialization<5, 7>::Add();
|
||||
VectorConvectionNLFGradDiagPA3D::Specialization<5, 8>::Add();
|
||||
}
|
||||
VectorConvectionNLFGradDiagPA3D::Run(d1d, q1d, ne,
|
||||
maps->B.Read(),
|
||||
maps->G.Read(),
|
||||
pa_adj.Read(),
|
||||
pa_u.Read(),
|
||||
de.ReadWrite(),
|
||||
d1d, q1d);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Unsupported dimension");
|
||||
}
|
||||
}
|
||||
|
||||
/// \cond DO_NOT_DOCUMENT
|
||||
|
||||
template<int T_D1D, int T_Q1D>
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFGradDiagPAType
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFGradDiagPA2D::Kernel()
|
||||
{
|
||||
static_assert(T_D1D <= T_Q1D, "d1d > q1d is not supported");
|
||||
return SmemPAConvectionNLGradDiagonal2D<T_D1D, T_Q1D>;
|
||||
}
|
||||
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFGradDiagPAType
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFGradDiagPA2D::Fallback
|
||||
(int d1d, int q1d)
|
||||
{
|
||||
MFEM_VERIFY(d1d <= q1d, "d1d > q1d is not supported");
|
||||
MFEM_VERIFY(d1d <= 16, "d1d > 16 is not supported");
|
||||
MFEM_VERIFY(q1d <= 16, "q1d > 16 is not supported");
|
||||
return SmemPAConvectionNLGradDiagonal2D<>;
|
||||
}
|
||||
|
||||
template<int T_D1D, int T_Q1D>
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFGradDiagPAType
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFGradDiagPA3D::Kernel()
|
||||
{
|
||||
static_assert(T_D1D <= T_Q1D, "d1d > q1d is not supported");
|
||||
return SmemPAConvectionNLGradDiagonal3D<T_D1D, T_Q1D>;
|
||||
}
|
||||
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFGradDiagPAType
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFGradDiagPA3D::Fallback
|
||||
(int d1d, int q1d)
|
||||
{
|
||||
MFEM_VERIFY(d1d <= q1d, "d1d > q1d is not supported");
|
||||
MFEM_VERIFY(d1d <= 16, "d1d > 16 is not supported");
|
||||
MFEM_VERIFY(q1d <= 16, "q1d > 16 is not supported");
|
||||
return SmemPAConvectionNLGradDiagonal3D<>;
|
||||
}
|
||||
|
||||
/// \endcond DO_NOT_DOCUMENT
|
||||
|
||||
} // namespace mfem
|
||||
@@ -0,0 +1,319 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#include <utility>
|
||||
|
||||
#include "../kernels.hpp"
|
||||
#include "../nonlininteg.hpp"
|
||||
#include "../../general/forall.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
void VectorConvectionNLFIntegrator::AssembleGradPA(
|
||||
const Vector &u, const FiniteElementSpace &fes)
|
||||
{
|
||||
this->pa_u = u;
|
||||
AssemblePA(fes);
|
||||
|
||||
if (static auto done = false; !std::exchange(done, true))
|
||||
{
|
||||
// 2D
|
||||
VectorConvectionNLFAddMultGradPA2D::Specialization<2, 2>::Add();
|
||||
VectorConvectionNLFAddMultGradPA2D::Specialization<2, 3>::Add();
|
||||
VectorConvectionNLFAddMultGradPA2D::Specialization<3, 4>::Add();
|
||||
VectorConvectionNLFAddMultGradPA2D::Specialization<3, 5>::Add();
|
||||
VectorConvectionNLFAddMultGradPA2D::Specialization<4, 5>::Add();
|
||||
VectorConvectionNLFAddMultGradPA2D::Specialization<4, 6>::Add();
|
||||
VectorConvectionNLFAddMultGradPA2D::Specialization<5, 7>::Add();
|
||||
VectorConvectionNLFAddMultGradPA2D::Specialization<5, 8>::Add();
|
||||
VectorConvectionNLFAddMultGradPA2D::Specialization<6, 8>::Add();
|
||||
// 3D
|
||||
VectorConvectionNLFAddMultGradPA3D::Specialization<2, 3>::Add();
|
||||
VectorConvectionNLFAddMultGradPA3D::Specialization<2, 4>::Add();
|
||||
VectorConvectionNLFAddMultGradPA3D::Specialization<2, 5>::Add();
|
||||
VectorConvectionNLFAddMultGradPA3D::Specialization<3, 4>::Add();
|
||||
VectorConvectionNLFAddMultGradPA3D::Specialization<3, 5>::Add();
|
||||
VectorConvectionNLFAddMultGradPA3D::Specialization<3, 6>::Add();
|
||||
VectorConvectionNLFAddMultGradPA3D::Specialization<4, 5>::Add();
|
||||
VectorConvectionNLFAddMultGradPA3D::Specialization<4, 6>::Add();
|
||||
VectorConvectionNLFAddMultGradPA3D::Specialization<5, 6>::Add();
|
||||
VectorConvectionNLFAddMultGradPA3D::Specialization<4, 7>::Add();
|
||||
VectorConvectionNLFAddMultGradPA3D::Specialization<4, 8>::Add();
|
||||
VectorConvectionNLFAddMultGradPA3D::Specialization<5, 7>::Add();
|
||||
VectorConvectionNLFAddMultGradPA3D::Specialization<5, 8>::Add();
|
||||
}
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int T_MDQ = 16>
|
||||
static void SmemPAConvectionNLGradApply2D(const int ne,
|
||||
const real_t *b,
|
||||
const real_t *g,
|
||||
const real_t *a,
|
||||
const real_t *u,
|
||||
const real_t *du,
|
||||
real_t *y,
|
||||
const int d1d,
|
||||
const int q1d)
|
||||
{
|
||||
static constexpr int VDIM = 2, DIM = 2;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
const auto A = Reshape(a, VDIM, DIM, Q1D, Q1D, ne);
|
||||
const auto U = Reshape(u, D1D, D1D, VDIM, ne);
|
||||
const auto dU = Reshape(du, D1D, D1D, VDIM, ne);
|
||||
auto Y = Reshape(y, D1D, D1D, VDIM, ne);
|
||||
|
||||
mfem::forall_2D<T_Q1D * T_Q1D>(ne, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
|
||||
{
|
||||
constexpr int MD1 = T_D1D ? T_D1D : T_MDQ;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : T_MDQ;
|
||||
|
||||
MFEM_SHARED real_t smem[MQ1][MQ1];
|
||||
MFEM_SHARED real_t sB[MD1][MQ1], sG[MD1][MQ1];
|
||||
|
||||
kernels::internal::vd_regs2d_t<VDIM, DIM, MQ1> g0, g1, g2;
|
||||
kernels::internal::v_regs2d_t<DIM, MQ1> r0, r1, r2;
|
||||
|
||||
kernels::internal::LoadMatrix(D1D, Q1D, b, sB);
|
||||
kernels::internal::LoadMatrix(D1D, Q1D, g, sG);
|
||||
|
||||
kernels::internal::LoadDofs2d(e, D1D, dU, g0);
|
||||
kernels::internal::Grad2d(D1D, Q1D, smem, sB, sG, g0, g1); // δu gradient
|
||||
|
||||
kernels::internal::LoadDofs2d(e, D1D, U, r0);
|
||||
kernels::internal::Eval2d(D1D, Q1D, smem, sB, r0, r2); // u value
|
||||
|
||||
kernels::internal::LoadDofs2d(e, D1D, dU, r0);
|
||||
kernels::internal::Eval2d(D1D, Q1D, smem, sB, r0, r1); // δu value
|
||||
|
||||
kernels::internal::LoadDofs2d(e, D1D, U, g0);
|
||||
kernels::internal::Grad2d(D1D, Q1D, smem, sB, sG, g0, g2); // u gradient
|
||||
|
||||
MFEM_FOREACH_THREAD_DIRECT(qy, y, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx, x, Q1D)
|
||||
{
|
||||
// First part of the Jacobian: u·∇δu
|
||||
const future::tensor<real_t, DIM> u_val =
|
||||
{
|
||||
r2[0][qy][qx], r2[1][qy][qx]
|
||||
};
|
||||
const future::tensor<real_t, VDIM, DIM> Q_adj =
|
||||
{
|
||||
{ { A(0, 0, qx, qy, e), A(1, 0, qx, qy, e) },
|
||||
{ A(0, 1, qx, qy, e), A(1, 1, qx, qy, e) }
|
||||
}
|
||||
};
|
||||
const future::tensor<real_t, VDIM, DIM> grad_dU =
|
||||
{
|
||||
{ { g1[0][0][qy][qx], g1[1][0][qy][qx] },
|
||||
{ g1[0][1][qy][qx], g1[1][1][qy][qx] }
|
||||
}
|
||||
};
|
||||
const auto one = transpose(grad_dU) * (Q_adj * u_val);
|
||||
|
||||
// Second part of the Jacobian: δu·∇u
|
||||
const future::tensor<real_t, DIM> du_val =
|
||||
{
|
||||
r1[0][qy][qx], r1[1][qy][qx]
|
||||
};
|
||||
const future::tensor<real_t, VDIM, DIM> grad_U =
|
||||
{
|
||||
{ { g2[0][0][qy][qx], g2[1][0][qy][qx] },
|
||||
{ g2[0][1][qy][qx], g2[1][1][qy][qx] }
|
||||
}
|
||||
};
|
||||
const auto two = transpose(grad_U) * (Q_adj * du_val);
|
||||
|
||||
// u⋅∇δu + δu⋅∇u
|
||||
r0[0][qy][qx] = one[0] + two[0];
|
||||
r0[1][qy][qx] = one[1] + two[1];
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
kernels::internal::EvalTranspose2d(D1D, Q1D, smem, sB, r0, r1);
|
||||
kernels::internal::WriteDofs2d(e, D1D, r1, Y);
|
||||
});
|
||||
}
|
||||
|
||||
template<int T_D1D = 0, int T_Q1D = 0, int T_MDQ = 16>
|
||||
static void SmemPAConvectionNLGradApply3D(const int ne,
|
||||
const real_t *b,
|
||||
const real_t *g,
|
||||
const real_t *a,
|
||||
const real_t *u,
|
||||
const real_t *du,
|
||||
real_t *y,
|
||||
const int d1d,
|
||||
const int q1d)
|
||||
{
|
||||
static constexpr int VDIM = 3, DIM = 3;
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
const auto A = Reshape(a, VDIM, DIM, Q1D, Q1D, Q1D, ne);
|
||||
const auto U = Reshape(u, D1D, D1D, D1D, VDIM, ne);
|
||||
const auto dU = Reshape(du, D1D, D1D, D1D, VDIM, ne);
|
||||
auto Y = Reshape(y, D1D, D1D, D1D, VDIM, ne);
|
||||
|
||||
mfem::forall_2D<T_Q1D * T_Q1D>(ne, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
|
||||
{
|
||||
constexpr int MD1 = T_D1D ? T_D1D : T_MDQ;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : T_MDQ;
|
||||
|
||||
MFEM_SHARED real_t smem[MQ1][MQ1];
|
||||
MFEM_SHARED real_t sB[MD1][MQ1], sG[MD1][MQ1];
|
||||
|
||||
kernels::internal::v_regs3d_t<VDIM, MQ1> r0, r1, r2;
|
||||
kernels::internal::vd_regs3d_t<VDIM, DIM, MQ1> g0, g1, g2;
|
||||
|
||||
kernels::internal::LoadMatrix(D1D, Q1D, b, sB);
|
||||
kernels::internal::LoadMatrix(D1D, Q1D, g, sG);
|
||||
|
||||
kernels::internal::LoadDofs3d(e, D1D, dU, g0);
|
||||
kernels::internal::Grad3d(D1D, Q1D, smem, sB, sG, g0, g1); // δu gradient
|
||||
|
||||
kernels::internal::LoadDofs3d(e, D1D, U, r0);
|
||||
kernels::internal::Eval3d(D1D, Q1D, smem, sB, r0, r2); // u value
|
||||
|
||||
kernels::internal::LoadDofs3d(e, D1D, dU, r0);
|
||||
kernels::internal::Eval3d(D1D, Q1D, smem, sB, r0, r1); // δu value
|
||||
|
||||
kernels::internal::LoadDofs3d(e, D1D, U, g0);
|
||||
kernels::internal::Grad3d(D1D, Q1D, smem, sB, sG, g0, g2); // u gradient
|
||||
|
||||
for (int qz = 0; qz < Q1D; qz++)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(qy, y, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx, x, Q1D)
|
||||
{
|
||||
// First part of the Jacobian: u·∇δu
|
||||
const future::tensor<real_t, DIM> u_val =
|
||||
{
|
||||
r2[0][qz][qy][qx],
|
||||
r2[1][qz][qy][qx],
|
||||
r2[2][qz][qy][qx]
|
||||
};
|
||||
const future::tensor<real_t, VDIM, DIM> Q_adj = {{
|
||||
{A(0,0,qx,qy,qz,e), A(1,0,qx,qy,qz,e), A(2,0,qx,qy,qz,e)},
|
||||
{A(0,1,qx,qy,qz,e), A(1,1,qx,qy,qz,e), A(2,1,qx,qy,qz,e)},
|
||||
{A(0,2,qx,qy,qz,e), A(1,2,qx,qy,qz,e), A(2,2,qx,qy,qz,e)}
|
||||
}
|
||||
};
|
||||
const future::tensor<real_t, DIM, DIM> grad_dU = {{
|
||||
{g1[0][0][qz][qy][qx], g1[1][0][qz][qy][qx], g1[2][0][qz][qy][qx]},
|
||||
{g1[0][1][qz][qy][qx], g1[1][1][qz][qy][qx], g1[2][1][qz][qy][qx]},
|
||||
{g1[0][2][qz][qy][qx], g1[1][2][qz][qy][qx], g1[2][2][qz][qy][qx]}
|
||||
}
|
||||
};
|
||||
const auto one = transpose(grad_dU) * (Q_adj * u_val);
|
||||
|
||||
// Second part of the Jacobian: δu·∇u
|
||||
const future::tensor<real_t, DIM> du_val =
|
||||
{
|
||||
r1[0][qz][qy][qx], r1[1][qz][qy][qx], r1[2][qz][qy][qx]
|
||||
};
|
||||
const future::tensor<real_t, VDIM, DIM> grad_U = {{
|
||||
{g2[0][0][qz][qy][qx], g2[1][0][qz][qy][qx], g2[2][0][qz][qy][qx]},
|
||||
{g2[0][1][qz][qy][qx], g2[1][1][qz][qy][qx], g2[2][1][qz][qy][qx]},
|
||||
{g2[0][2][qz][qy][qx], g2[1][2][qz][qy][qx], g2[2][2][qz][qy][qx]}
|
||||
}
|
||||
};
|
||||
const auto two = transpose(grad_U) * (Q_adj * du_val);
|
||||
|
||||
// u⋅∇δu + δu⋅∇u
|
||||
r0[0][qz][qy][qx] = one[0] + two[0];
|
||||
r0[1][qz][qy][qx] = one[1] + two[1];
|
||||
r0[2][qz][qy][qx] = one[2] + two[2];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
kernels::internal::EvalTranspose3d(D1D, Q1D, smem, sB, r0, r1);
|
||||
kernels::internal::WriteDofs3d(e, D1D, r1, Y);
|
||||
});
|
||||
}
|
||||
|
||||
void VectorConvectionNLFIntegrator::AddMultGradPA(const Vector &x,
|
||||
Vector &y) const
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
VectorConvectionNLFAddMultGradPA2D::Run(d1d, q1d, ne,
|
||||
maps->B.Read(),
|
||||
maps->G.Read(),
|
||||
pa_adj.Read(),
|
||||
pa_u.Read(),
|
||||
x.Read(),
|
||||
y.ReadWrite(),
|
||||
d1d, q1d);
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
VectorConvectionNLFAddMultGradPA3D::Run(d1d, q1d, ne,
|
||||
maps->B.Read(),
|
||||
maps->G.Read(),
|
||||
pa_adj.Read(),
|
||||
pa_u.Read(),
|
||||
x.Read(),
|
||||
y.ReadWrite(),
|
||||
d1d, q1d);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Unsupported dimension");
|
||||
}
|
||||
}
|
||||
|
||||
/// \cond DO_NOT_DOCUMENT
|
||||
|
||||
template<int T_D1D, int T_Q1D>
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFAddMultGradPAType
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFAddMultGradPA2D::Kernel()
|
||||
{
|
||||
static_assert(T_D1D <= T_Q1D, "d1d > q1d is not supported");
|
||||
return SmemPAConvectionNLGradApply2D<T_D1D, T_Q1D>;
|
||||
}
|
||||
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFAddMultGradPAType
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFAddMultGradPA2D::Fallback
|
||||
(int d1d, int q1d)
|
||||
{
|
||||
MFEM_VERIFY(d1d <= q1d, "d1d > q1d is not supported");
|
||||
MFEM_VERIFY(d1d <= 16, "d1d > 16 is not supported");
|
||||
MFEM_VERIFY(q1d <= 16, "q1d > 16 is not supported");
|
||||
return SmemPAConvectionNLGradApply2D<>;
|
||||
}
|
||||
|
||||
template<int T_D1D, int T_Q1D>
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFAddMultGradPAType
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFAddMultGradPA3D::Kernel()
|
||||
{
|
||||
static_assert(T_D1D <= T_Q1D, "d1d > q1d is not supported");
|
||||
return SmemPAConvectionNLGradApply3D<T_D1D, T_Q1D>;
|
||||
}
|
||||
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFAddMultGradPAType
|
||||
VectorConvectionNLFIntegrator::VectorConvectionNLFAddMultGradPA3D::Fallback
|
||||
(int d1d, int q1d)
|
||||
{
|
||||
MFEM_VERIFY(d1d <= q1d, "d1d > q1d is not supported");
|
||||
MFEM_VERIFY(d1d <= 16, "d1d > 16 is not supported");
|
||||
MFEM_VERIFY(q1d <= 16, "q1d > 16 is not supported");
|
||||
return SmemPAConvectionNLGradApply3D<>;
|
||||
}
|
||||
|
||||
/// \endcond DO_NOT_DOCUMENT
|
||||
|
||||
} // namespace mfem
|
||||
+811
-327
File diff suppressed because it is too large
Load Diff
+63
-64
@@ -43,56 +43,52 @@ public:
|
||||
index = i;
|
||||
}
|
||||
|
||||
void Set3w(const real_t x1, const real_t x2, const real_t x3, const real_t w)
|
||||
{ x = x1; y = x2; z = x3; weight = w; }
|
||||
void Set2w(const real_t x1, const real_t x2, const real_t w)
|
||||
{ x = x1; y = x2; weight = w; }
|
||||
void Set1w(const real_t x1, const real_t w)
|
||||
{ x = x1; weight = w; }
|
||||
|
||||
void Set3w(const real_t *p) { Set3w(p[0], p[1], p[2], p[3]); }
|
||||
void Set2w(const real_t *p) { Set2w(p[0], p[1], p[2]); }
|
||||
void Set1w(const real_t *p) { Set1w(p[0], p[1]); }
|
||||
|
||||
void Set3(const real_t x1, const real_t x2, const real_t x3)
|
||||
{ x = x1; y = x2; z = x3; }
|
||||
void Set2(const real_t x1, const real_t x2)
|
||||
{ x = x1; y = x2; }
|
||||
void Set1(const real_t x1)
|
||||
{ x = x1; }
|
||||
|
||||
void Set3(const real_t *p) { Set3(p[0], p[1], p[2]); }
|
||||
void Set2(const real_t *p) { Set2(p[0], p[1]); }
|
||||
void Set1(const real_t *p) { Set1(p[0]); }
|
||||
|
||||
void Set(const real_t x1, const real_t x2, const real_t x3, const real_t w)
|
||||
{ Set3w(x1, x2, x3, w); }
|
||||
|
||||
void Set(const real_t *p, const int dim)
|
||||
{
|
||||
MFEM_ASSERT(1 <= dim && dim <= 3, "invalid dim: " << dim);
|
||||
x = p[0];
|
||||
if (dim > 1)
|
||||
switch (dim)
|
||||
{
|
||||
y = p[1];
|
||||
if (dim > 2)
|
||||
{
|
||||
z = p[2];
|
||||
}
|
||||
case 3: Set3(p); break;
|
||||
case 2: Set2(p); break;
|
||||
case 1: Set1(p); break;
|
||||
}
|
||||
}
|
||||
|
||||
void Get(real_t *p, const int dim) const
|
||||
{
|
||||
MFEM_ASSERT(1 <= dim && dim <= 3, "invalid dim: " << dim);
|
||||
p[0] = x;
|
||||
if (dim > 1)
|
||||
switch (dim)
|
||||
{
|
||||
p[1] = y;
|
||||
if (dim > 2)
|
||||
{
|
||||
p[2] = z;
|
||||
}
|
||||
case 3: p[2] = z;
|
||||
case 2: p[1] = y;
|
||||
case 1: p[0] = x;
|
||||
}
|
||||
}
|
||||
|
||||
void Set(const real_t x1, const real_t x2, const real_t x3, const real_t w)
|
||||
{ x = x1; y = x2; z = x3; weight = w; }
|
||||
|
||||
void Set3w(const real_t *p) { x = p[0]; y = p[1]; z = p[2]; weight = p[3]; }
|
||||
|
||||
void Set3(const real_t x1, const real_t x2, const real_t x3)
|
||||
{ x = x1; y = x2; z = x3; }
|
||||
|
||||
void Set3(const real_t *p) { x = p[0]; y = p[1]; z = p[2]; }
|
||||
|
||||
void Set2w(const real_t x1, const real_t x2, const real_t w)
|
||||
{ x = x1; y = x2; weight = w; }
|
||||
|
||||
void Set2w(const real_t *p) { x = p[0]; y = p[1]; weight = p[2]; }
|
||||
|
||||
void Set2(const real_t x1, const real_t x2) { x = x1; y = x2; }
|
||||
|
||||
void Set2(const real_t *p) { x = p[0]; y = p[1]; }
|
||||
|
||||
void Set1w(const real_t x1, const real_t w) { x = x1; weight = w; }
|
||||
|
||||
void Set1w(const real_t *p) { x = p[0]; weight = p[1]; }
|
||||
};
|
||||
|
||||
/// Class for an integration rule - an Array of IntegrationPoint.
|
||||
@@ -125,18 +121,6 @@ private:
|
||||
void AddTriPoints3b(const int off, const real_t b, const real_t weight)
|
||||
{ AddTriPoints3(off, (1. - b)/2., b, weight); }
|
||||
|
||||
void AddTriPoints3R(const int off, const real_t a, const real_t b,
|
||||
const real_t c, const real_t weight)
|
||||
{
|
||||
IntPoint(off + 0).Set2w(a, b, weight);
|
||||
IntPoint(off + 1).Set2w(c, a, weight);
|
||||
IntPoint(off + 2).Set2w(b, c, weight);
|
||||
}
|
||||
|
||||
void AddTriPoints3R(const int off, const real_t a, const real_t b,
|
||||
const real_t weight)
|
||||
{ AddTriPoints3R(off, a, b, 1. - a - b, weight); }
|
||||
|
||||
void AddTriPoints6(const int off, const real_t a, const real_t b,
|
||||
const real_t c, const real_t weight)
|
||||
{
|
||||
@@ -183,14 +167,6 @@ private:
|
||||
AddTetPoints3(off + 1, a, 1. - 3.*a, weight);
|
||||
}
|
||||
|
||||
// given b, add the permutations of (a,a,a,b), where 3*a + b = 1
|
||||
void AddTetPoints4b(const int off, const real_t b, const real_t weight)
|
||||
{
|
||||
const real_t a = (1. - b)/3.;
|
||||
IntPoint(off).Set(a, a, a, weight);
|
||||
AddTetPoints3(off + 1, a, b, weight);
|
||||
}
|
||||
|
||||
// add the permutations of (a,a,b,b), 2*(a + b) = 1
|
||||
void AddTetPoints6(const int off, const real_t a, const real_t weight)
|
||||
{
|
||||
@@ -209,14 +185,37 @@ private:
|
||||
AddTetPoints6(off + 6, a, bc, cb, weight);
|
||||
}
|
||||
|
||||
// given (b,c), add the permutations of (a,a,b,c), 2*a + b + c = 1
|
||||
void AddTetPoints12bc(const int off, const real_t b, const real_t c,
|
||||
const real_t weight)
|
||||
// add all 24 permutations of (a,b,c,d) where a+b+c+d = 1, all distinct
|
||||
void AddTetPoints24(const int off, const real_t a, const real_t b,
|
||||
const real_t c, const real_t weight)
|
||||
{
|
||||
const real_t a = (1. - b - c)/2.;
|
||||
AddTetPoints3(off, a, b, weight);
|
||||
AddTetPoints3(off + 3, a, c, weight);
|
||||
AddTetPoints6(off + 6, a, b, c, weight);
|
||||
const real_t d = 1. - a - b - c;
|
||||
// all 24 permutations of 4 distinct barycentric coordinates
|
||||
// permuting which coordinate goes to x, y, z (4th is 1-x-y-z)
|
||||
IntPoint(off + 0).Set(a, b, c, weight);
|
||||
IntPoint(off + 1).Set(a, b, d, weight);
|
||||
IntPoint(off + 2).Set(a, c, b, weight);
|
||||
IntPoint(off + 3).Set(a, c, d, weight);
|
||||
IntPoint(off + 4).Set(a, d, b, weight);
|
||||
IntPoint(off + 5).Set(a, d, c, weight);
|
||||
IntPoint(off + 6).Set(b, a, c, weight);
|
||||
IntPoint(off + 7).Set(b, a, d, weight);
|
||||
IntPoint(off + 8).Set(b, c, a, weight);
|
||||
IntPoint(off + 9).Set(b, c, d, weight);
|
||||
IntPoint(off + 10).Set(b, d, a, weight);
|
||||
IntPoint(off + 11).Set(b, d, c, weight);
|
||||
IntPoint(off + 12).Set(c, a, b, weight);
|
||||
IntPoint(off + 13).Set(c, a, d, weight);
|
||||
IntPoint(off + 14).Set(c, b, a, weight);
|
||||
IntPoint(off + 15).Set(c, b, d, weight);
|
||||
IntPoint(off + 16).Set(c, d, a, weight);
|
||||
IntPoint(off + 17).Set(c, d, b, weight);
|
||||
IntPoint(off + 18).Set(d, a, b, weight);
|
||||
IntPoint(off + 19).Set(d, a, c, weight);
|
||||
IntPoint(off + 20).Set(d, b, a, weight);
|
||||
IntPoint(off + 21).Set(d, b, c, weight);
|
||||
IntPoint(off + 22).Set(d, c, a, weight);
|
||||
IntPoint(off + 23).Set(d, c, b, weight);
|
||||
}
|
||||
|
||||
public:
|
||||
|
||||
+9
-2
@@ -83,7 +83,7 @@ constexpr int SetMaxOf(int n) { return NextMultipleOf<4>(n); }
|
||||
#endif // CUDA/HIP && DEVICE_COMPILE
|
||||
|
||||
/// Load 2D matrix into shared memory
|
||||
template <int MQ1>
|
||||
template <int MQ1, bool TRANSPOSE = false>
|
||||
inline MFEM_HOST_DEVICE void LoadMatrix(const int d1d, const int q1d,
|
||||
const real_t *M, real_t (*N)[MQ1])
|
||||
{
|
||||
@@ -91,7 +91,14 @@ inline MFEM_HOST_DEVICE void LoadMatrix(const int d1d, const int q1d,
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx, x, q1d)
|
||||
{
|
||||
N[dy][qx] = M[dy * q1d + qx];
|
||||
if constexpr (TRANSPOSE)
|
||||
{
|
||||
N[dy][qx] = M[qx * d1d + dy];
|
||||
}
|
||||
else
|
||||
{
|
||||
N[dy][qx] = M[dy * q1d + qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
+3
-1
@@ -297,7 +297,8 @@ void LinearForm::Assemble()
|
||||
tr = mesh->GetBdrFaceTransformations(i);
|
||||
if (tr != NULL)
|
||||
{
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs);
|
||||
mfem::DofTransformation doftrans;
|
||||
fes -> GetElementVDofs (tr -> Elem1No, vdofs, doftrans);
|
||||
for (int k = 0; k < boundary_face_integs.Size(); k++)
|
||||
{
|
||||
if (boundary_face_integs_marker[k] &&
|
||||
@@ -307,6 +308,7 @@ void LinearForm::Assemble()
|
||||
boundary_face_integs[k]->
|
||||
AssembleRHSElementVect(*fes->GetFE(tr->Elem1No),
|
||||
*tr, elemvect);
|
||||
doftrans.TransformDual(elemvect);
|
||||
AddElementVector (vdofs, elemvect);
|
||||
}
|
||||
}
|
||||
|
||||
+2
-2
@@ -164,8 +164,8 @@ private:
|
||||
|
||||
public:
|
||||
/// Constructs the domain integrator $ (Q, \nabla v) $
|
||||
DomainLFGradIntegrator(VectorCoefficient &QF)
|
||||
: DeltaLFIntegrator(QF), Q(QF) { }
|
||||
DomainLFGradIntegrator(VectorCoefficient &QF, const IntegrationRule *ir = NULL)
|
||||
: DeltaLFIntegrator(QF, ir), Q(QF) { }
|
||||
|
||||
bool SupportsDevice() const override { return true; }
|
||||
|
||||
|
||||
+4
-4
@@ -284,12 +284,12 @@ GeometricMultigrid::GeometricMultigrid(
|
||||
ownedProlongations.SetSize(nlevels - 1);
|
||||
ownedProlongations = have_ess_bdr;
|
||||
|
||||
if (have_ess_bdr)
|
||||
essentialTrueDofs.SetSize(nlevels);
|
||||
for (int level = 0; level < nlevels; ++level)
|
||||
{
|
||||
essentialTrueDofs.SetSize(nlevels);
|
||||
for (int level = 0; level < nlevels; ++level)
|
||||
essentialTrueDofs[level] = new Array<int>;
|
||||
if (have_ess_bdr)
|
||||
{
|
||||
essentialTrueDofs[level] = new Array<int>;
|
||||
fespaces.GetFESpaceAtLevel(level).GetEssentialTrueDofs(
|
||||
ess_bdr, *essentialTrueDofs[level]);
|
||||
}
|
||||
|
||||
+1
-2
@@ -187,8 +187,7 @@ public:
|
||||
/// mesh boundary element attributes that define the essential DOFs.
|
||||
///
|
||||
/// If @a ess_bdr is empty, or all its entries are 0, then no essential
|
||||
/// boundary conditions are imposed and the protected array essentialTrueDofs
|
||||
/// remains empty.
|
||||
/// boundary conditions are imposed.
|
||||
GeometricMultigrid(const FiniteElementSpaceHierarchy& fespaces_,
|
||||
const Array<int> &ess_bdr);
|
||||
|
||||
|
||||
+44
-4
@@ -18,6 +18,7 @@
|
||||
#include "fespace.hpp"
|
||||
#include "ceed/interface/operator.hpp"
|
||||
#include "integrator.hpp"
|
||||
#include "kernel_dispatch.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -384,10 +385,10 @@ private:
|
||||
DenseMatrix dshape, dshapex, EF, gradEF, ELV, elmat_comp;
|
||||
Vector shape;
|
||||
// PA extension
|
||||
Vector pa_data;
|
||||
int dim, ne, nq, d1d, q1d;
|
||||
Vector pa_adj, pa_u;
|
||||
const DofToQuad *maps; ///< Not owned
|
||||
const GeometricFactors *geom; ///< Not owned
|
||||
int dim, ne, nq;
|
||||
|
||||
public:
|
||||
VectorConvectionNLFIntegrator(Coefficient &q): Q(&q) { }
|
||||
@@ -411,12 +412,51 @@ public:
|
||||
|
||||
void AssemblePA(const FiniteElementSpace &fes) override;
|
||||
|
||||
void AssembleMF(const FiniteElementSpace &fes) override;
|
||||
void AssembleGradPA(const Vector &x, const FiniteElementSpace &fes) override;
|
||||
|
||||
void AddMultPA(const Vector &x, Vector &y) const override;
|
||||
|
||||
void AddMultMF(const Vector &x, Vector &y) const override;
|
||||
using VectorConvectionNLFAddMultPAType =
|
||||
void(*)(const int ne, const real_t *B, const real_t *G, const real_t *A,
|
||||
const real_t *x, real_t *y,
|
||||
const int d1d, const int q1d);
|
||||
MFEM_REGISTER_KERNELS(VectorConvectionNLFAddMultPA,
|
||||
VectorConvectionNLFAddMultPAType,
|
||||
(int, int, int));
|
||||
|
||||
void AddMultGradPA(const Vector &x, Vector &y) const override;
|
||||
|
||||
using VectorConvectionNLFAddMultGradPAType =
|
||||
void(*)(const int ne, const real_t *B, const real_t *G, const real_t *A,
|
||||
const real_t *u, const real_t *x, real_t *y,
|
||||
const int d1d, const int q1d);
|
||||
|
||||
MFEM_REGISTER_KERNELS(VectorConvectionNLFAddMultGradPA2D,
|
||||
VectorConvectionNLFAddMultGradPAType,
|
||||
(int, int));
|
||||
|
||||
MFEM_REGISTER_KERNELS(VectorConvectionNLFAddMultGradPA3D,
|
||||
VectorConvectionNLFAddMultGradPAType,
|
||||
(int, int));
|
||||
|
||||
void AssembleGradDiagonalPA(Vector &) const override;
|
||||
|
||||
using VectorConvectionNLFGradDiagPAType =
|
||||
void (*)(const int ne, const real_t *B, const real_t *G, const real_t *A,
|
||||
const real_t *u, real_t *y,
|
||||
const int d1d, const int q1d);
|
||||
|
||||
MFEM_REGISTER_KERNELS(VectorConvectionNLFGradDiagPA2D,
|
||||
VectorConvectionNLFGradDiagPAType,
|
||||
(int, int));
|
||||
|
||||
MFEM_REGISTER_KERNELS(VectorConvectionNLFGradDiagPA3D,
|
||||
VectorConvectionNLFGradDiagPAType,
|
||||
(int, int));
|
||||
|
||||
void AssembleMF(const FiniteElementSpace &fes) override;
|
||||
|
||||
void AddMultMF(const Vector &x, Vector &y) const override;
|
||||
|
||||
protected:
|
||||
const IntegrationRule* GetDefaultIntegrationRule(
|
||||
|
||||
+31
-3
@@ -349,6 +349,7 @@ void ParFiniteElementSpace::GetGroupComm(
|
||||
}
|
||||
}
|
||||
|
||||
bool have_sign_flips = false;
|
||||
if (g_ldof_sign)
|
||||
{
|
||||
g_ldof_sign->SetSize(GetNDofs());
|
||||
@@ -428,6 +429,7 @@ void ParFiniteElementSpace::GetGroupComm(
|
||||
if (g_ldof_sign)
|
||||
{
|
||||
(*g_ldof_sign)[dofs[l]] = -1;
|
||||
have_sign_flips = true;
|
||||
}
|
||||
}
|
||||
else
|
||||
@@ -466,6 +468,7 @@ void ParFiniteElementSpace::GetGroupComm(
|
||||
if (g_ldof_sign)
|
||||
{
|
||||
(*g_ldof_sign)[dofs[l]] = -1;
|
||||
have_sign_flips = true;
|
||||
}
|
||||
}
|
||||
else
|
||||
@@ -504,6 +507,7 @@ void ParFiniteElementSpace::GetGroupComm(
|
||||
if (g_ldof_sign)
|
||||
{
|
||||
(*g_ldof_sign)[dofs[l]] = -1;
|
||||
have_sign_flips = true;
|
||||
}
|
||||
}
|
||||
else
|
||||
@@ -527,12 +531,18 @@ void ParFiniteElementSpace::GetGroupComm(
|
||||
group_ldof.GetI()[gr+1] = group_ldof_counter;
|
||||
}
|
||||
|
||||
if (g_ldof_sign && have_sign_flips == false)
|
||||
{
|
||||
g_ldof_sign->DeleteAll();
|
||||
}
|
||||
|
||||
gc.Finalize();
|
||||
}
|
||||
|
||||
void ParFiniteElementSpace::ApplyLDofSigns(Array<int> &dofs) const
|
||||
{
|
||||
MFEM_ASSERT(Conforming(), "wrong code path");
|
||||
if (!HaveDofSigns()) { return; }
|
||||
|
||||
for (int i = 0; i < dofs.Size(); i++)
|
||||
{
|
||||
@@ -559,6 +569,24 @@ void ParFiniteElementSpace::ApplyLDofSigns(Table &el_dof) const
|
||||
ApplyLDofSigns(all_dofs);
|
||||
}
|
||||
|
||||
void ParFiniteElementSpace::ApplyDofSigns(real_t *h_data) const
|
||||
{
|
||||
if (!HaveDofSigns()) { return; }
|
||||
|
||||
const bool byvdim = (ordering == Ordering::byVDIM);
|
||||
for (int i = 0; i < ndofs; i++)
|
||||
{
|
||||
if (ldof_sign[i] < 0)
|
||||
{
|
||||
for (int d = 0; d < vdim; d++)
|
||||
{
|
||||
const int idx = byvdim ? d+vdim*i : i+ndofs*d;
|
||||
h_data[idx] = -h_data[idx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void ParFiniteElementSpace::GetElementDofs(int i, Array<int> &dofs,
|
||||
DofTransformation &doftrans) const
|
||||
{
|
||||
@@ -1193,15 +1221,15 @@ void ParFiniteElementSpace::GetEssentialTrueDofsVar(const Array<int>
|
||||
MFEM_VERIFY(IsVariableOrder() && R,
|
||||
"GetEssentialTrueDofsVar is only for variable-order spaces");
|
||||
|
||||
true_ess_dofs.SetSize(R->Height(), Device::GetDeviceMemoryType());
|
||||
true_ess_dofs.SetSize(R->Height());
|
||||
true_ess_dofs.HostWrite();
|
||||
true_ess_dofs = 0;
|
||||
|
||||
const int ntdofs = tdof2ldof.Size();
|
||||
MFEM_VERIFY(vdim * ntdofs == R->NumRows() &&
|
||||
vdim * ntdofs == true_ess_dofs.Size(), "");
|
||||
MFEM_VERIFY(ldof_ltdof.Size() == ndofs && ess_dofs.Size() == vdim * ndofs, "");
|
||||
|
||||
true_ess_dofs = 0;
|
||||
|
||||
const bool bynodes = (ordering == Ordering::byNODES);
|
||||
const int vdim_factor = bynodes ? 1 : vdim;
|
||||
const int num_true_dofs = R->NumRows() / vdim;
|
||||
|
||||
+14
-2
@@ -340,8 +340,20 @@ public:
|
||||
|
||||
inline ParMesh *GetParMesh() const { return pmesh; }
|
||||
|
||||
int GetDofSign(int i)
|
||||
{ return NURBSext || Nonconforming() ? 1 : ldof_sign[VDofToDof(i)]; }
|
||||
/** @brief Return true if the parallel FE space has DOFs with signs opposite
|
||||
of the DOFs in the respective serial FE space. */
|
||||
bool HaveDofSigns() const { return ldof_sign.Size() != 0; }
|
||||
|
||||
/** @brief Apply the DOF signs to the given host data @a h_data which must be
|
||||
of size GetVSize() if HaveDofSigns() is true. If HaveDofSigns() is false,
|
||||
this method is no-op and returns immediately. */
|
||||
void ApplyDofSigns(real_t *h_data) const;
|
||||
|
||||
/** @brief Return -1 if the given (vector) DOF @a i has a sign opposite of
|
||||
the DOF in the respecive serial FE space. Otherwise, return 1. */
|
||||
int GetDofSign(int i) const
|
||||
{ return !HaveDofSigns() ? 1 : ldof_sign[VDofToDof(i)]; }
|
||||
|
||||
HYPRE_BigInt *GetDofOffsets() const { return dof_offsets; }
|
||||
HYPRE_BigInt *GetTrueDofOffsets() const { return tdof_offsets; }
|
||||
HYPRE_BigInt GlobalVSize() const
|
||||
|
||||
+33
-10
@@ -80,6 +80,8 @@ ParGridFunction::ParGridFunction(ParMesh *pmesh, std::istream &input)
|
||||
fes->GetOrdering());
|
||||
delete fes;
|
||||
fes = pfes;
|
||||
|
||||
pfes->ApplyDofSigns(HostReadWrite());
|
||||
}
|
||||
|
||||
void ParGridFunction::Update()
|
||||
@@ -545,6 +547,8 @@ void ParGridFunction::GetElementDofValues(int el, Vector &dof_vals) const
|
||||
|
||||
void ParGridFunction::ProjectCoefficient(Coefficient &coeff, ProjectType type)
|
||||
{
|
||||
MFEM_VERIFY(VectorDim() == 1,
|
||||
"Cannot project scalar coefficient onto vector ParGridFunction");
|
||||
DeltaCoefficient *delta_c = dynamic_cast<DeltaCoefficient *>(&coeff);
|
||||
|
||||
if (delta_c == NULL)
|
||||
@@ -715,7 +719,8 @@ void ParGridFunction::ProjectCoefficientElementL2(VectorCoefficient &vcoeff)
|
||||
}
|
||||
|
||||
|
||||
void ParGridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff)
|
||||
void ParGridFunction::ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff)
|
||||
{
|
||||
// local maximal element attribute for each dof
|
||||
Array<int> ldof_attr;
|
||||
@@ -761,6 +766,9 @@ void ParGridFunction::ProjectDiscCoefficient(VectorCoefficient &coeff)
|
||||
|
||||
void ParGridFunction::ProjectDiscCoefficient(Coefficient &coeff, AvgType type)
|
||||
{
|
||||
MFEM_VERIFY(
|
||||
VectorDim() == 1,
|
||||
"Cannot project scalar coefficient onto a vector ParGridFunction");
|
||||
// Harmonic (x1 ... xn) = [ (1/x1 + ... + 1/xn) / n ]^-1.
|
||||
// Arithmetic(x1 ... xn) = (x1 + ... + xn) / n.
|
||||
|
||||
@@ -786,6 +794,8 @@ void ParGridFunction::ProjectDiscCoefficient(VectorCoefficient &vcoeff,
|
||||
// Harmonic (x1 ... xn) = [ (1/x1 + ... + 1/xn) / n ]^-1.
|
||||
// Arithmetic(x1 ... xn) = (x1 + ... + xn) / n.
|
||||
|
||||
MFEM_VERIFY(VectorDim() == vcoeff.GetVDim(), "vcoeff vdim != VectorDim()");
|
||||
|
||||
// Number of zones that contain a given dof.
|
||||
Array<int> zones_per_vdof;
|
||||
AccumulateAndCountZones(vcoeff, type, zones_per_vdof);
|
||||
@@ -858,6 +868,12 @@ void ParGridFunction::ProjectBdrCoefficient(
|
||||
#endif
|
||||
}
|
||||
|
||||
void ParGridFunction::ProjectBdrCoefficient(VectorCoefficient &vcoeff,
|
||||
const Array<int> &attr)
|
||||
{
|
||||
ProjectBdrCoefficient(NULL, &vcoeff, attr);
|
||||
}
|
||||
|
||||
void ParGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient &vcoeff,
|
||||
const Array<int> &bdr_attr)
|
||||
{
|
||||
@@ -1068,18 +1084,17 @@ real_t ParGridFunction::ComputeDGFaceJumpError(Coefficient *exsol,
|
||||
|
||||
void ParGridFunction::Save(std::ostream &os) const
|
||||
{
|
||||
real_t *data_ = const_cast<real_t*>(HostRead());
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
if (pfes->GetDofSign(i) < 0) { data_[i] = -data_[i]; }
|
||||
}
|
||||
// We use const_cast + HostRead (instead of HostReadWrite) because we only
|
||||
// need to change the host data temporarily and this way we do not invalidate
|
||||
// the data if it is on device. If we use HostReadWrite here, later calls to
|
||||
// Read or ReadWrite will need to copy the data from host to device. With the
|
||||
// approach used here, the host-to-device copy is avoided.
|
||||
real_t *h_data = const_cast<real_t*>(HostRead());
|
||||
pfes->ApplyDofSigns(h_data);
|
||||
|
||||
GridFunction::Save(os);
|
||||
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
if (pfes->GetDofSign(i) < 0) { data_[i] = -data_[i]; }
|
||||
}
|
||||
pfes->ApplyDofSigns(h_data);
|
||||
}
|
||||
|
||||
void ParGridFunction::Save(const char *fname, int precision) const
|
||||
@@ -1250,7 +1265,13 @@ void ParGridFunction::SaveAsOne(std::ostream &os) const
|
||||
int *nfdofs = new int[NRanks];
|
||||
int *nrdofs = new int[NRanks];
|
||||
|
||||
// We use const_cast + HostRead (instead of HostReadWrite) because we only
|
||||
// need to change the host data temporarily and this way we do not invalidate
|
||||
// the data if it is on device. If we use HostReadWrite here, later calls to
|
||||
// Read or ReadWrite will need to copy the data from host to device. With the
|
||||
// approach used here, the host-to-device copy is avoided.
|
||||
real_t * h_data = const_cast<real_t *>(this->HostRead());
|
||||
pfes->ApplyDofSigns(h_data); // temporarily flip the dof signs
|
||||
|
||||
values[0] = h_data;
|
||||
nv[0] = pfes -> GetVSize();
|
||||
@@ -1357,6 +1378,8 @@ void ParGridFunction::SaveAsOne(std::ostream &os) const
|
||||
MPI_Send(h_data, nv[0], MPITypeMap<real_t>::mpi_type, 0, 460, MyComm);
|
||||
}
|
||||
|
||||
pfes->ApplyDofSigns(h_data); // restore the original h_data
|
||||
|
||||
delete [] values;
|
||||
delete [] nv;
|
||||
delete [] nvdofs;
|
||||
|
||||
+7
-7
@@ -63,6 +63,12 @@ protected:
|
||||
void ProjectBdrCoefficient(Coefficient *coeff[], VectorCoefficient *vcoeff,
|
||||
const Array<int> &attr);
|
||||
|
||||
/** @brief Project a discontinuous (vector) coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
virtual void ProjectDiscCoefficient(
|
||||
std::variant<Coefficient*, VectorCoefficient*> coeff) override;
|
||||
|
||||
public:
|
||||
ParGridFunction() { pfes = NULL; }
|
||||
|
||||
@@ -268,11 +274,6 @@ public:
|
||||
ProjectType type = ProjectType::DEFAULT) override;
|
||||
|
||||
using GridFunction::ProjectDiscCoefficient;
|
||||
/** @brief Project a discontinuous vector coefficient as a grid function on
|
||||
a continuous finite element space. The values in shared dofs are
|
||||
determined from the element with maximal attribute. */
|
||||
void ProjectDiscCoefficient(VectorCoefficient &coeff) override;
|
||||
|
||||
void ProjectDiscCoefficient(Coefficient &coeff, AvgType type) override;
|
||||
|
||||
void ProjectDiscCoefficient(VectorCoefficient &vcoeff, AvgType type) override;
|
||||
@@ -280,8 +281,7 @@ public:
|
||||
using GridFunction::ProjectBdrCoefficient;
|
||||
|
||||
void ProjectBdrCoefficient(VectorCoefficient &vcoeff,
|
||||
const Array<int> &attr) override
|
||||
{ ProjectBdrCoefficient(NULL, &vcoeff, attr); }
|
||||
const Array<int> &attr) override;
|
||||
|
||||
void ProjectBdrCoefficient(Coefficient *coeff[],
|
||||
const Array<int> &attr) override
|
||||
|
||||
+11
-5
@@ -321,12 +321,17 @@ void ParL2FaceRestriction::DoubleValuedConformingMult(
|
||||
const int vd = vdim;
|
||||
const bool t = byvdim;
|
||||
const int threshold = ndofs;
|
||||
const int nsdofs = pfes.GetFaceNbrVSize();
|
||||
const int nsdofs = pfes.GetFaceNbrVSize() / vd;
|
||||
auto d_indices1 = scatter_indices1.Read();
|
||||
auto d_indices2 = scatter_indices2.Read();
|
||||
auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
|
||||
auto d_x_shared = Reshape(face_nbr_data.Read(),
|
||||
t?vd:nsdofs, t?nsdofs:vd);
|
||||
const int ne_shared = nsdofs / elem_dofs;
|
||||
const int nedof = elem_dofs;
|
||||
// Note: the shape of face_nbr_data, as determined by
|
||||
// ParFiniteElementSpace::ExchangeFaceNbrData, is (elem_dofs, vdim,
|
||||
// ne_shared), independent of the ordering (byNODES or byVDIM) of the finite
|
||||
// element space.
|
||||
auto d_x_shared = Reshape(face_nbr_data.Read(), elem_dofs, vd, ne_shared);
|
||||
auto d_y = Reshape(y.Write(), nface_dofs, vd, 2, nf);
|
||||
mfem::forall(nfdofs, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
@@ -346,8 +351,9 @@ void ParL2FaceRestriction::DoubleValuedConformingMult(
|
||||
}
|
||||
else if (idx2>=threshold) // shared boundary
|
||||
{
|
||||
d_y(dof, c, 1, face) = d_x_shared(t?c:(idx2-threshold),
|
||||
t?(idx2-threshold):c);
|
||||
const int e_shared = (idx2 - threshold) / nedof;
|
||||
const int i_shared = (idx2 - threshold) % nedof;
|
||||
d_y(dof, c, 1, face) = d_x_shared(i_shared,c,e_shared);
|
||||
}
|
||||
else // true boundary
|
||||
{
|
||||
|
||||
+3
-6
@@ -1398,20 +1398,17 @@ void L2FaceRestriction::PermuteAndSetSharedFaceDofsScatterIndices2(
|
||||
const int dim = fes.GetMesh()->Dimension();
|
||||
const int dof1d = fes.GetTypicalFE()->GetOrder()+1;
|
||||
fes.GetTypicalFE()->GetFaceMap(face_id2, face_map);
|
||||
Array<int> face_nbr_dofs;
|
||||
const ParFiniteElementSpace &pfes =
|
||||
static_cast<const ParFiniteElementSpace&>(this->fes);
|
||||
pfes.GetFaceNbrElementVDofs(elem_index, face_nbr_dofs);
|
||||
|
||||
for (int face_dof_elem1 = 0; face_dof_elem1 < face_dofs; ++face_dof_elem1)
|
||||
{
|
||||
const int face_dof_elem2 = PermuteFaceL2(dim, face_id1, face_id2,
|
||||
orientation, dof1d, face_dof_elem1);
|
||||
const int volume_dof_elem2 = face_map[face_dof_elem2];
|
||||
const int global_dof_elem2 = face_nbr_dofs[volume_dof_elem2];
|
||||
// Encode the volume DOF index and element index
|
||||
const int global_dof_elem2 = elem_index*elem_dofs + volume_dof_elem2;
|
||||
const int restriction_dof_elem2 = face_dofs*face_index + face_dof_elem1;
|
||||
// Trick to differentiate dof location inter/shared
|
||||
scatter_indices2[restriction_dof_elem2] = ndofs+global_dof_elem2;
|
||||
scatter_indices2[restriction_dof_elem2] = ndofs + global_dof_elem2;
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
+66
-10
@@ -3797,13 +3797,18 @@ void TMOP_Integrator::EnableLimiting(const GridFunction &n0, Coefficient &w0,
|
||||
|
||||
void TMOP_Integrator::EnableAdaptiveLimiting(const GridFunction &z0,
|
||||
Coefficient &coeff,
|
||||
AdaptivityEvaluator &ae)
|
||||
AdaptivityEvaluator &ae,
|
||||
real_t delta_max)
|
||||
{
|
||||
MFEM_VERIFY(delta_max > 0.0,
|
||||
"EnableAdaptiveLimiting requires delta_max > 0.0.");
|
||||
|
||||
adapt_lim_gf0 = &z0;
|
||||
delete adapt_lim_gf;
|
||||
adapt_lim_gf = new GridFunction(z0);
|
||||
adapt_lim_coeff = &coeff;
|
||||
adapt_lim_eval = &ae;
|
||||
adapt_lim_delta_max = delta_max;
|
||||
|
||||
adapt_lim_eval->SetSerialMetaInfo(*z0.FESpace()->GetMesh(),
|
||||
*z0.FESpace());
|
||||
@@ -3814,14 +3819,19 @@ void TMOP_Integrator::EnableAdaptiveLimiting(const GridFunction &z0,
|
||||
#ifdef MFEM_USE_MPI
|
||||
void TMOP_Integrator::EnableAdaptiveLimiting(const ParGridFunction &z0,
|
||||
Coefficient &coeff,
|
||||
AdaptivityEvaluator &ae)
|
||||
AdaptivityEvaluator &ae,
|
||||
real_t delta_max)
|
||||
{
|
||||
MFEM_VERIFY(delta_max > 0.0,
|
||||
"EnableAdaptiveLimiting requires delta_max > 0.0.");
|
||||
|
||||
adapt_lim_gf0 = &z0;
|
||||
adapt_lim_pgf0 = &z0;
|
||||
delete adapt_lim_gf;
|
||||
adapt_lim_gf = new GridFunction(z0);
|
||||
adapt_lim_coeff = &coeff;
|
||||
adapt_lim_eval = &ae;
|
||||
adapt_lim_delta_max = delta_max;
|
||||
|
||||
adapt_lim_eval->SetParMetaInfo(*z0.ParFESpace()->GetParMesh(),
|
||||
*z0.ParFESpace());
|
||||
@@ -4297,7 +4307,8 @@ real_t TMOP_Integrator::GetElementEnergy(const FiniteElement &el,
|
||||
// Contribution from the adaptive limiting term.
|
||||
if (adaptive_limiting)
|
||||
{
|
||||
const real_t diff = adapt_lim_gf_q(i) - adapt_lim_gf0_q(i);
|
||||
const real_t diff = (adapt_lim_gf_q(i) - adapt_lim_gf0_q(i)) /
|
||||
adapt_lim_delta_max;
|
||||
val += adapt_lim_coeff->Eval(*Tpr, ip) * lim_normal * diff * diff;
|
||||
}
|
||||
|
||||
@@ -4848,14 +4859,16 @@ void TMOP_Integrator::AssembleElemVecAdaptLim(const FiniteElement &el,
|
||||
grad_phys.Mult(adapt_lim_gf_e, grad_ptr);
|
||||
|
||||
Vector adapt_lim_gf_grad_q(dim);
|
||||
|
||||
for (int q = 0; q < nqp; q++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir.IntPoint(q);
|
||||
el.CalcShape(ip, shape);
|
||||
|
||||
adapt_lim_gf_grad_e.MultTranspose(shape, adapt_lim_gf_grad_q);
|
||||
adapt_lim_gf_grad_q *= 2.0 * (adapt_lim_gf_q(q) - adapt_lim_gf0_q(q));
|
||||
adapt_lim_gf_grad_q *= 2.0 * (adapt_lim_gf_q(q) - adapt_lim_gf0_q(q)) /
|
||||
adapt_lim_delta_max / adapt_lim_delta_max;
|
||||
adapt_lim_gf_grad_q *= weights(q) * lim_normal * adapt_lim_coeff->Eval(Tpr, ip);
|
||||
|
||||
AddMultVWt(shape, adapt_lim_gf_grad_q, mat);
|
||||
}
|
||||
}
|
||||
@@ -4902,7 +4915,11 @@ void TMOP_Integrator::AssembleElemGradAdaptLim(const FiniteElement &el,
|
||||
Vector gg_ptr(adapt_lim_gf_hess_q.GetData(), dim*dim);
|
||||
adapt_lim_gf_hess_e.MultTranspose(shape, gg_ptr);
|
||||
|
||||
const real_t w = weights(q) * lim_normal * adapt_lim_coeff->Eval(Tpr, ip);
|
||||
const real_t coeff = adapt_lim_coeff->Eval(Tpr, ip);
|
||||
const real_t factor =
|
||||
weights(q) * lim_normal * coeff * 2.0 /
|
||||
(adapt_lim_delta_max * adapt_lim_delta_max);
|
||||
|
||||
for (int i = 0; i < dof * dim; i++)
|
||||
{
|
||||
const int idof = i % dof, idim = i / dof;
|
||||
@@ -4910,10 +4927,11 @@ void TMOP_Integrator::AssembleElemGradAdaptLim(const FiniteElement &el,
|
||||
{
|
||||
const int jdof = j % dof, jdim = j / dof;
|
||||
const real_t entry =
|
||||
w * ( 2.0 * adapt_lim_gf_grad_q(idim) * shape(idof) *
|
||||
/* */ adapt_lim_gf_grad_q(jdim) * shape(jdof) +
|
||||
2.0 * (adapt_lim_gf_q(q) - adapt_lim_gf0_q(q)) *
|
||||
adapt_lim_gf_hess_q(idim, jdim) * shape(idof) * shape(jdof));
|
||||
factor *
|
||||
(adapt_lim_gf_grad_q(idim) * shape(idof) *
|
||||
adapt_lim_gf_grad_q(jdim) * shape(jdof) +
|
||||
(adapt_lim_gf_q(q) - adapt_lim_gf0_q(q)) *
|
||||
adapt_lim_gf_hess_q(idim, jdim) * shape(idof) * shape(jdof));
|
||||
mat(i, j) += entry;
|
||||
if (i != j) { mat(j, i) += entry; }
|
||||
}
|
||||
@@ -5671,6 +5689,22 @@ UpdateAfterMeshPositionChange(const Vector &d, const FiniteElementSpace &d_fes)
|
||||
if (adapt_lim_gf)
|
||||
{
|
||||
adapt_lim_eval->ComputeAtNewPosition(x_loc, *adapt_lim_gf, ordering);
|
||||
if (PA.enabled)
|
||||
{
|
||||
PA.AL_grads_assembled = false;
|
||||
|
||||
// Step 1 of PA.ALFmF0 update: subtract the old ALF.
|
||||
PA.ALFmF0 -= PA.ALF;
|
||||
|
||||
// Refresh PA.ALF from the updated adapt_lim_gf.
|
||||
const ElementDofOrdering ord = ElementDofOrdering::LEXICOGRAPHIC;
|
||||
const Operator *alf_R =
|
||||
adapt_lim_gf->FESpace()->GetElementRestriction(ord);
|
||||
alf_R->Mult(*adapt_lim_gf, PA.ALF);
|
||||
|
||||
// Step 2 of PA.ALFmF0 update: add the new ALF.
|
||||
PA.ALFmF0 += PA.ALF;
|
||||
}
|
||||
}
|
||||
|
||||
// Update surf_fit_gf (and optionally its gradients) if surface
|
||||
@@ -5931,6 +5965,28 @@ void TMOPComboIntegrator::EnableLimiting(const GridFunction &n0,
|
||||
for (int i = 1; i < tmopi.Size(); i++) { tmopi[i]->DisableLimiting(); }
|
||||
}
|
||||
|
||||
void TMOPComboIntegrator::EnableAdaptiveLimiting(const GridFunction &z0,
|
||||
Coefficient &coeff,
|
||||
AdaptivityEvaluator &ae,
|
||||
real_t delta_max)
|
||||
{
|
||||
MFEM_VERIFY(tmopi.Size() > 0, "No TMOP_Integrators were added.");
|
||||
|
||||
tmopi[0]->EnableAdaptiveLimiting(z0, coeff, ae, delta_max);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
void TMOPComboIntegrator::EnableAdaptiveLimiting(const ParGridFunction &z0,
|
||||
Coefficient &coeff,
|
||||
AdaptivityEvaluator &ae,
|
||||
real_t delta_max)
|
||||
{
|
||||
MFEM_VERIFY(tmopi.Size() > 0, "No TMOP_Integrators were added.");
|
||||
|
||||
tmopi[0]->EnableAdaptiveLimiting(z0, coeff, ae, delta_max);
|
||||
}
|
||||
#endif
|
||||
|
||||
void TMOPComboIntegrator::SetLimitingNodes(const GridFunction &n0)
|
||||
{
|
||||
MFEM_VERIFY(tmopi.Size() > 0, "No TMOP_Integrators were added.");
|
||||
|
||||
+62
-11
@@ -1440,6 +1440,7 @@ public:
|
||||
void Eval_d2(const Vector &x, const Vector &x0, real_t dist,
|
||||
DenseMatrix &d2) const override
|
||||
{
|
||||
MFEM_CONTRACT_VAR(x0);
|
||||
MFEM_ASSERT(x.Size() == x0.Size(), "Bad input.");
|
||||
|
||||
d2.Diag(1.0 / (dist * dist), x.Size());
|
||||
@@ -2044,6 +2045,7 @@ protected:
|
||||
GridFunction *adapt_lim_gf; // Owned. Updated by adapt_lim_eval.
|
||||
Coefficient *adapt_lim_coeff; // Not owned.
|
||||
AdaptivityEvaluator *adapt_lim_eval; // Not owned.
|
||||
real_t adapt_lim_delta_max = 1.0;
|
||||
|
||||
// Surface fitting.
|
||||
const Array<bool> *surf_fit_marker; // Not owned. Nodes to fit.
|
||||
@@ -2110,9 +2112,20 @@ protected:
|
||||
// Updated by every call to PANonlinearFormExtension::GetGradient().
|
||||
// MC: Q-Vector for the metric Coefficient.
|
||||
// Updated when the mesh nodes change.
|
||||
// ALC: Q-Vector for spatial weight used for the adaptive limiting term.
|
||||
// Updated when the mesh nodes change.
|
||||
// ALF: E-Vector constructed using adaptive limiting GF zeta.
|
||||
// The zeta is remapped when the mesh nodes change.
|
||||
// ALFmF0: E-Vector constructed using adaptive limiting GF zeta.
|
||||
// It stores difference zeta-zeta0, as all computations use this.
|
||||
// ALFG: Q-Vector for gradient of ALF at quadrature points.
|
||||
// Updated by every call to PANonlinearFormExtension::GetGradient().
|
||||
// ALFH: Q-Vector for Hessian of ALF at quadrature points.
|
||||
// Updated by every call to PANonlinearFormExtension::GetGradient().
|
||||
//
|
||||
// maps: Dof2Quad map for fes associated with the nodal coordinates.
|
||||
// maps_lim: Dof2Quad map for fes associated with the limiting dist GridFunc.
|
||||
// maps: Dof2Quad map for fes associated with the nodal coordinates.
|
||||
// maps_lim: Dof2Quad map for fes associated with the limiting dist GF.
|
||||
// maps_nodes: like maps, but the quad points are the FE nodes.
|
||||
//
|
||||
// Jtr_debug_grad
|
||||
// We keep track if Jtr was set by AssembleGradPA() in Jtr_debug_grad: it
|
||||
@@ -2131,9 +2144,13 @@ protected:
|
||||
mutable DenseTensor Jtr;
|
||||
mutable bool Jtr_needs_update;
|
||||
mutable bool Jtr_debug_grad;
|
||||
mutable Vector E, O, X0, XL, H, C0, LD, H0, MC;
|
||||
mutable Vector E, O, X0, XL, H, C0, LD, H0, MC, ALC,
|
||||
ALF, ALFmF0, ALFG, ALFH;
|
||||
mutable bool AL_grads_assembled;
|
||||
real_t al_delta;
|
||||
const DofToQuad *maps;
|
||||
const DofToQuad *maps_lim = nullptr;
|
||||
const DofToQuad *maps_nodes = nullptr;
|
||||
const GeometricFactors *geom;
|
||||
const FiniteElementSpace *fes;
|
||||
const IntegrationRule *ir;
|
||||
@@ -2216,16 +2233,25 @@ protected:
|
||||
return EnergyIntegrationRule(el);
|
||||
}
|
||||
|
||||
//
|
||||
// Auxiliary PA methods
|
||||
//
|
||||
|
||||
// PA quadrature data computation - metric term / limiting / adapt limiting.
|
||||
void AssembleGradPA_2D(const Vector&) const;
|
||||
void AssembleGradPA_3D(const Vector&) const;
|
||||
void AssembleGradPA_C0_2D(const Vector&) const;
|
||||
void AssembleGradPA_C0_3D(const Vector&) const;
|
||||
void AssembleGradPA_AdaptLim_2D(const Vector&) const;
|
||||
void AssembleGradPA_AdaptLim_3D(const Vector&) const;
|
||||
|
||||
// PA energy computation - metric term / limiting / adaptive limiting.
|
||||
void GetLocalStateEnergyPA_2D(const Vector &x, real_t &energy) const;
|
||||
void GetLocalStateEnergyPA_3D(const Vector&, real_t &energy) const;
|
||||
void GetLocalStateEnergyPA_3D(const Vector &x, real_t &energy) const;
|
||||
real_t GetLocalStateEnergyPA_C0_2D(const Vector&) const;
|
||||
real_t GetLocalStateEnergyPA_C0_3D(const Vector&) const;
|
||||
real_t GetLocalStateEnergyPA_AdaptLim_2D() const;
|
||||
real_t GetLocalStateEnergyPA_AdaptLim_3D() const;
|
||||
void GetLocalNormalizationEnergiesPA_2D(const Vector &x,
|
||||
real_t &met_energy,
|
||||
real_t &lim_energy) const;
|
||||
@@ -2233,22 +2259,35 @@ protected:
|
||||
real_t &met_energy,
|
||||
real_t &lim_energy) const;
|
||||
|
||||
// PA gradient computation - metric term / limiting / adaptive limiting.
|
||||
void AddMultPA_2D(const Vector&, Vector&) const;
|
||||
void AddMultPA_3D(const Vector&, Vector&) const;
|
||||
void AddMultPA_C0_2D(const Vector&, Vector&) const;
|
||||
void AddMultPA_C0_3D(const Vector&, Vector&) const;
|
||||
void AddMultPA_AdaptLim_2D(const Vector&, Vector&) const;
|
||||
void AddMultPA_AdaptLim_3D(const Vector&, Vector&) const;
|
||||
|
||||
// PA Hessian AddMult - metric term / limiting / adaptive limiting.
|
||||
void AddMultGradPA_2D(const Vector&, Vector&) const;
|
||||
void AddMultGradPA_3D(const Vector&, Vector&) const;
|
||||
void AddMultGradPA_C0_2D(const Vector&, Vector&) const;
|
||||
void AddMultGradPA_C0_3D(const Vector&, Vector&) const;
|
||||
void AddMultGradPA_AdaptLim_2D(const Vector&, Vector&) const;
|
||||
void AddMultGradPA_AdaptLim_3D(const Vector&, Vector&) const;
|
||||
|
||||
// PA diagonal assemblies - metric term / limiting / adaptive limiting.
|
||||
void AssembleDiagonalPA_2D(Vector&) const;
|
||||
void AssembleDiagonalPA_3D(Vector&) const;
|
||||
void AssembleDiagonalPA_C0_2D(Vector&) const;
|
||||
void AssembleDiagonalPA_C0_3D(Vector&) const;
|
||||
void AssembleDiagonalPA_AdaptLim_2D(Vector&) const;
|
||||
void AssembleDiagonalPA_AdaptLim_3D(Vector&) const;
|
||||
|
||||
// Setup of PA data structures related to the limiting term.
|
||||
void AssemblePA_Limiting();
|
||||
// Setup of PA data structures related to the adaptive limiting term.
|
||||
void AssemblePA_AdaptLim();
|
||||
// Compute reference->target Jacobians for all quad points.
|
||||
void ComputeAllElementTargets(const Vector &xe = Vector()) const;
|
||||
// Updates the Q-vectors for the metric_coeff and lim_coeff, based on the
|
||||
// new physical positions of the quadrature points.
|
||||
@@ -2351,21 +2390,23 @@ public:
|
||||
|
||||
/** @brief Restriction of the node positions to certain regions.
|
||||
|
||||
Adds the term $ \int c (z(x) - z_0(x_0))^2 $, where z0(x0) is a given
|
||||
function on the starting mesh, and z(x) is its image on the new mesh.
|
||||
Minimizing this term means that a node at x0 is allowed to move to a
|
||||
position x(x0) only if z(x) ~ z0(x0).
|
||||
Adds the term $ \int c (z(x) - z_0(x_0))^2 / delta_max^2 $, where z0(x0)
|
||||
is a given function on the starting mesh, and z(x) is its image on the
|
||||
new mesh. Minimizing this term means that a node at x0 is allowed to
|
||||
move to a position x(x0) only if z(x) ~ z0(x0).
|
||||
Such term can be used for tangential mesh relaxation.
|
||||
|
||||
@param[in] z0 Function z0 that controls the adaptive limiting.
|
||||
@param[in] coeff Coefficient c for the above integral.
|
||||
@param[in] ae AdaptivityEvaluator to compute z(x) from z0(x0). */
|
||||
@param[in] ae AdaptivityEvaluator to compute z(x) from z0(x0).
|
||||
@param[in] delta_max Controls the allowable deviation from z0.
|
||||
Smaller values activate the term faster. */
|
||||
void EnableAdaptiveLimiting(const GridFunction &z0, Coefficient &coeff,
|
||||
AdaptivityEvaluator &ae);
|
||||
AdaptivityEvaluator &ae, real_t delta_max = 1.0);
|
||||
#ifdef MFEM_USE_MPI
|
||||
/// Parallel support for adaptive limiting.
|
||||
void EnableAdaptiveLimiting(const ParGridFunction &z0, Coefficient &coeff,
|
||||
AdaptivityEvaluator &ae);
|
||||
AdaptivityEvaluator &ae, real_t delta_max = 1.0);
|
||||
#endif
|
||||
|
||||
/** @brief Fitting of certain DOFs to the zero level set of a function.
|
||||
@@ -2588,6 +2629,16 @@ public:
|
||||
void EnableLimiting(const GridFunction &n0, Coefficient &w0,
|
||||
TMOP_LimiterFunction *lfunc = NULL);
|
||||
|
||||
/// Adds the adaptive limiting term to the first integrator.
|
||||
void EnableAdaptiveLimiting(const GridFunction &z0, Coefficient &coeff,
|
||||
AdaptivityEvaluator &ae, real_t delta_max = 1.0);
|
||||
#ifdef MFEM_USE_MPI
|
||||
/// Parallel support for adaptive limiting.
|
||||
void EnableAdaptiveLimiting(const ParGridFunction &z0, Coefficient &coeff,
|
||||
AdaptivityEvaluator &ae, real_t delta_max = 1.0);
|
||||
#endif
|
||||
|
||||
|
||||
/// Update the original/reference nodes used for limiting.
|
||||
void SetLimitingNodes(const GridFunction &n0);
|
||||
|
||||
|
||||
@@ -11,7 +11,9 @@
|
||||
|
||||
#include "../pa.hpp"
|
||||
#include "../../tmop.hpp"
|
||||
#include "../../kernels.hpp"
|
||||
#include "../../../general/forall.hpp"
|
||||
#include "../../../linalg/kernels.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -64,6 +66,93 @@ void TMOP_AssembleDiagPA_C0_2D(const int NE,
|
||||
});
|
||||
}
|
||||
|
||||
// Diagonal assembly for AdaptLim limiting (2D)
|
||||
template <int MD1, int MQ1, int T_D1D = 0, int T_Q1D = 0>
|
||||
void TMOP_AssembleDiagPA_AdaptLim_2D(const real_t lim_normal,
|
||||
const real_t adapt_lim_delta_max,
|
||||
const bool const_coeff,
|
||||
const DeviceTensor<3, const real_t> &ALC,
|
||||
const int NE,
|
||||
const DeviceTensor<5, const real_t> &J,
|
||||
const ConstDeviceMatrix &W,
|
||||
const real_t *b,
|
||||
const DeviceTensor<4, const real_t> &ALF_grad,
|
||||
const DeviceTensor<5, const real_t> &ALF_hess,
|
||||
const ConstDeviceCube &ALFmF0,
|
||||
DeviceTensor<4> &D,
|
||||
const int d1d,
|
||||
const int q1d)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
|
||||
const real_t normal_inv_delta_sq =
|
||||
2.0 * lim_normal / (adapt_lim_delta_max * adapt_lim_delta_max);
|
||||
|
||||
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
|
||||
{
|
||||
MFEM_SHARED real_t sB[MD1][MQ1];
|
||||
MFEM_SHARED real_t smem[MQ1][MQ1];
|
||||
kernels::internal::LoadMatrix(D1D, Q1D, b, sB);
|
||||
|
||||
// ALF and ALF0 values at quad points.
|
||||
kernels::internal::s_regs2d_t<MQ1> alf_dof, alf_quad;
|
||||
kernels::internal::LoadDofs2d(e, D1D, ALFmF0, alf_dof);
|
||||
kernels::internal::Eval2d(D1D, Q1D, smem, sB, alf_dof, alf_quad);
|
||||
|
||||
MFEM_SHARED real_t qd[MQ1 * MD1];
|
||||
DeviceTensor<2, real_t> QD(qd, MQ1, MD1);
|
||||
|
||||
for (int v = 0; v < 2; v++)
|
||||
{
|
||||
// Contract in y.
|
||||
MFEM_FOREACH_THREAD_DIRECT(qx, x, Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy, y, D1D)
|
||||
{
|
||||
QD(qx, dy) = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const real_t By = sB[dy][qy];
|
||||
const real_t bb = By * By;
|
||||
|
||||
const real_t *Jtr = &J(0, 0, qx, qy, e);
|
||||
const real_t detJtr = kernels::Det<2>(Jtr);
|
||||
const real_t weight = W(qx, qy) * detJtr;
|
||||
const real_t coeff = const_coeff ? ALC(0, 0, 0) : ALC(qx, qy, e);
|
||||
const real_t factor = weight * coeff * normal_inv_delta_sq;
|
||||
|
||||
const real_t diff = alf_quad(qy, qx);
|
||||
const real_t grad_v = ALF_grad(v, qx, qy, e);
|
||||
const real_t hess_vv = ALF_hess(v, v, qx, qy, e);
|
||||
const real_t hdiag = factor * (grad_v * grad_v + diff * hess_vv);
|
||||
|
||||
QD(qx, dy) += bb * hdiag;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
|
||||
// Contract in x.
|
||||
MFEM_FOREACH_THREAD_DIRECT(dy, y, D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD_DIRECT(dx, x, D1D)
|
||||
{
|
||||
real_t d = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const real_t Bx = sB[dx][qx];
|
||||
const real_t bb = Bx * Bx;
|
||||
d += bb * QD(qx, dy);
|
||||
}
|
||||
D(dx, dy, v, e) += d;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
MFEM_TMOP_MDQ_REGISTER(TMOPAssembleDiagCoef2D, TMOP_AssembleDiagPA_C0_2D);
|
||||
MFEM_TMOP_MDQ_SPECIALIZE(TMOPAssembleDiagCoef2D);
|
||||
|
||||
@@ -80,4 +169,34 @@ void TMOP_Integrator::AssembleDiagonalPA_C0_2D(Vector &diagonal) const
|
||||
TMOPAssembleDiagCoef2D::Run(d, q, NE, B, H0, D, d, q);
|
||||
}
|
||||
|
||||
MFEM_TMOP_MDQ_REGISTER(TMOPAssembleDiagAdaptLim2D,
|
||||
TMOP_AssembleDiagPA_AdaptLim_2D);
|
||||
MFEM_TMOP_MDQ_SPECIALIZE(TMOPAssembleDiagAdaptLim2D);
|
||||
|
||||
void TMOP_Integrator::AssembleDiagonalPA_AdaptLim_2D(Vector &diagonal) const
|
||||
{
|
||||
const real_t ln = lim_normal;
|
||||
const real_t delta_max = PA.al_delta;
|
||||
const int NE = PA.ne, d = PA.maps->ndof, q = PA.maps->nqpt;
|
||||
|
||||
MFEM_VERIFY(d <= DeviceDofQuadLimits::Get().MAX_D1D, "");
|
||||
MFEM_VERIFY(q <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
|
||||
|
||||
const bool const_coeff = PA.ALC.Size() == 1;
|
||||
const auto ALC = const_coeff
|
||||
? Reshape(PA.ALC.Read(), 1, 1, 1)
|
||||
: Reshape(PA.ALC.Read(), q, q, NE);
|
||||
|
||||
const auto J = Reshape(PA.Jtr.Read(), 2, 2, q, q, NE);
|
||||
const auto W = Reshape(PA.ir->GetWeights().Read(), q, q);
|
||||
const auto *B = PA.maps->B.Read();
|
||||
const auto ALFmF0 = Reshape(PA.ALFmF0.Read(), d, d, NE);
|
||||
const auto ALF_grad = Reshape(PA.ALFG.Read(), 2, q, q, NE);
|
||||
const auto ALF_hess = Reshape(PA.ALFH.Read(), 2, 2, q, q, NE);
|
||||
auto D = Reshape(diagonal.ReadWrite(), d, d, 2, NE);
|
||||
|
||||
TMOPAssembleDiagAdaptLim2D::Run(d, q, ln, delta_max, const_coeff, ALC, NE,
|
||||
J, W, B, ALF_grad, ALF_hess, ALFmF0, D, d, q);
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user