Compare commits

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Author SHA1 Message Date
Stowell, Mark L. c968516f36 Merge branch 'complex-coef-dev' of github.com:mfem/mfem into complex-coef-dev 2025-07-22 10:46:29 -07:00
Stowell, Mark L. 9a9d1ea967 Switching to complex_t 2025-07-22 10:45:56 -07:00
Stowell, Mark L. 46ee2ab5dc Adding complex_t type using code by @camierjs 2025-07-22 10:43:59 -07:00
adam-sim-dev fb672667cc Merge branch 'master' into complex-coef-dev 2025-07-15 09:22:34 +08:00
Stowell, Mark L. 1d35fafd21 Removing complex<int> unit test due to a "Build Analysis" error 2025-07-14 13:44:17 -07:00
Stowell, Mark L. a0ed1bfbca Adding ComplexVector unit test 2025-07-14 13:18:58 -07:00
Stowell, Mark L. 0c08279225 Adding coefficient as template argument in SesquilinearForm 2025-07-14 10:40:53 -07:00
Stowell, Mark L. bc84ce3b47 Adding ComplexMatrixConstantCoefficient 2025-07-14 10:40:02 -07:00
Stowell, Mark L. 36abe386e0 Adding DenseMatrix constructor to StdComplexDenseMatrix 2025-07-14 10:39:31 -07:00
Stowell, Mark L. a4868f2a98 Adding ComplexMatrixCoefficient 2025-07-12 16:05:19 -07:00
Stowell, Mark L. 21321b3abc Adding new type of complex dense matrix 2025-07-12 16:05:03 -07:00
Stowell, Mark L. bb4f39c3d7 Avoiding circular dependency 2025-07-12 11:49:55 -07:00
Stowell, Mark L. b605a29988 Making Real/Imag part coefficients publicly available 2025-07-12 11:49:35 -07:00
Stowell, Mark L. 7967e13f1d Moving complex coefficient code into separate files 2025-07-12 10:30:00 -07:00
Stowell, Mark L. b615f22b66 Adding complex coefficient support to ComplexLinearForm classes 2025-07-12 10:20:34 -07:00
Stowell, Mark L. e0fe515f21 Adding ComplexCoefficient methods to ComplexLinearForm classes 2025-07-12 07:42:11 -07:00
Stowell, Mark L. 269ee766db Updating ex22p 2025-07-11 17:14:17 -07:00
Stowell, Mark L. da8a221097 Adding complex coefficients to parallel classes 2025-07-11 17:14:04 -07:00
Stowell, Mark L. 20d6e63df0 Ubuntu portability 2025-07-11 14:48:12 -07:00
Stowell, Mark L. 2288cdcb7f Ubuntu portability 2025-07-11 14:32:25 -07:00
Stowell, Mark L. 233337c9d1 Adding UseDevice to extraction of real and imaginary parts of ComplexVector 2025-07-11 14:26:26 -07:00
Stowell, Mark L. 4d9cd853b7 Fix for Ubuntu portability 2025-07-11 14:18:25 -07:00
Stowell, Mark L. 27352658c3 Using the new complex coefficient classes in ex22 2025-07-11 14:00:22 -07:00
Stowell, Mark L. b8a303a07a Adding Complex coefficient classes 2025-07-11 14:00:02 -07:00
Stowell, Mark L. cee9bf3bb2 Adding a ComplexVector class 2025-07-11 13:59:23 -07:00
701 changed files with 28883 additions and 97885 deletions
@@ -94,16 +94,6 @@ inputs:
description: If true, do not set any CXXFLAGS or LDFLAGS.
default: false
# Unfortunately, "uses:" fields cannot have references to variables like
# ${{env.MFEM_ACTIONS_VERSION}}, so the branch/tag name has to be hard coded.
# Therefore, in the future, when updating the version of the
# mfem/github-actions to use, we'll have to replace:
# - all definitions of MFEM_ACTIONS_VERSION and
# - all "uses:" fields that refer to mfem/github-actions.
MFEM_ACTIONS_VERSION:
description: Version (branch or tag) of the mfem/github-actions to use.
default: v2.7
runs:
using: 'composite'
steps:
@@ -128,7 +118,6 @@ runs:
echo UBSAN_LDFLAGS=${{inputs.UBSAN_LDFLAGS}} >> $GITHUB_ENV
echo MSAN_CXXFLAGS=${{inputs.MSAN_CXXFLAGS}} >> $GITHUB_ENV
echo MSAN_LDFLAGS=${{inputs.MSAN_LDFLAGS}} >> $GITHUB_ENV
echo MFEM_ACTIONS_VERSION=${{inputs.MFEM_ACTIONS_VERSION}} >> $GITHUB_ENV
shell: bash
- name: Env (dir)
+3 -3
View File
@@ -25,7 +25,7 @@ runs:
steps:
- uses: ./.github/actions/sanitize/config
- uses: actions/cache@v5
- uses: actions/cache@v4
if: ${{env.DEBUG == 'true'}}
id: debug
with:
@@ -53,7 +53,7 @@ runs:
run: echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.UBSAN_CXXFLAGS}} >> $GITHUB_ENV
shell: bash
- uses: mfem/github-actions/build-mfem@v2.7
- uses: mfem/github-actions/build-mfem@v2.5
if: ${{steps.debug.outputs.cache-hit != 'true'}}
env:
CXXFLAGS: ${{env.CXXFLAGS}}
@@ -82,7 +82,7 @@ runs:
run: find . -type f -name '*.o' -delete
shell: bash
- uses: actions/upload-artifact@v7
- uses: actions/upload-artifact@v4
with:
name: build-${{inputs.par}}-${{inputs.sanitizer}}
path: mfem/build
-6
View File
@@ -12,11 +12,6 @@
name: 'Install MPI'
description: 'Installs MPI and set up its environment variables'
inputs:
NO_FLAGS:
description: If true, do not set any CXXFLAGS or LDFLAGS.
default: false
runs:
using: 'composite'
steps:
@@ -32,7 +27,6 @@ runs:
shell: bash
- name: Env (bis)
if: ${{ inputs.NO_FLAGS != 'true' }}
run: |
echo CXXFLAGS=${{env.CXXFLAGS}} ${{env.MPI_INC}} >> $GITHUB_ENV
echo LDFLAGS=${{env.LDFLAGS}} ${{env.MPI_LIB}} >> $GITHUB_ENV
+2 -2
View File
@@ -36,7 +36,7 @@ runs:
steps:
- uses: ./.github/actions/sanitize/config
- uses: actions/cache@v5
- uses: actions/cache@v4
if: ${{env.DEBUG == 'true' && inputs.cache-skip != 'true'}}
id: debug
with:
@@ -49,7 +49,7 @@ runs:
par: ${{inputs.par}}
sanitizer: ${{inputs.sanitizer}}
- uses: actions/download-artifact@v8
- uses: actions/download-artifact@v4
with:
name: build-${{inputs.par}}-${{inputs.sanitizer}}
path: mfem/build
+7 -7
View File
@@ -23,7 +23,7 @@ inputs:
runs:
using: 'composite'
steps:
- uses: actions/cache/restore@v5 # Cache for LLVM libcxx
- uses: actions/cache/restore@v4 # Cache for LLVM libcxx
with:
path: ${{env.LLVM_DIR}}
fail-on-cache-miss: true
@@ -32,32 +32,32 @@ runs:
- uses: ./.github/actions/sanitize/mpi
if: ${{inputs.par == 'true'}}
- uses: actions/cache/restore@v5 # Cache for Hypre
- uses: actions/cache/restore@v4 # Cache for Hypre
if: ${{inputs.par == 'true'}}
with:
path: ${{env.HYPRE_DIR}}
fail-on-cache-miss: true
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-${{env.MFEM_ACTIONS_VERSION}}
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
- uses: actions/cache/restore@v5 # Cache for Metis
- uses: actions/cache/restore@v4 # Cache for Metis
if: ${{inputs.par == 'true'}}
with:
path: ${{env.METIS_DIR}}
fail-on-cache-miss: true
key: ${{runner.os}}-build-${{env.METIS_DIR}}-${{env.MFEM_ACTIONS_VERSION}}
key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
- name: Hypre/Metis links
if: ${{inputs.par == 'true'}}
run: ln -s -f ${{env.HYPRE_DIR}} hypre && ln -s -f ${{env.METIS_DIR}} metis-4.0
shell: bash
- uses: actions/cache/restore@v5 # Cache for LSAN suppression file
- uses: actions/cache/restore@v4 # Cache for LSAN suppression file
with:
path: ${{env.LSAN_DIR}}
fail-on-cache-miss: true
key: build-lsan-suppression-file
- uses: actions/checkout@v6 # Checkout the repository
- uses: actions/checkout@v4 # Checkout the repository
with:
path: mfem
# ref: ${{env.BRANCH}}
-42
View File
@@ -1,42 +0,0 @@
# MFEM Pull Request Review Agent Guide
## Purpose and scope
Review MFEM PRs for correctness, maintainability, performance, portability, test coverage, and MFEM consistency. Use the diff and PR context; reference source files, tests, and CI results when available. Follow `CONTRIBUTING.md`, especially Developer Guidelines, PR rules, checklist, and testing.
## Critical review pillars
- Correctness and numerical behavior
- API and user-facing impact
- Performance implications
- Maintainability and portability
## Review workflow
1. Read the PR description, linked issues, and intended behavior.
2. Inspect the diff before commenting.
3. Identify affected MFEM components, examples, tests, build or docs changes, and downstream APIs.
4. Analyze the code against the critical review pillars.
5. Compare the change against nearby code and MFEM patterns; flag unmotivated deviations.
6. Check whether tests and documentation were updated appropriately.
7. Review CI results and suggest actions.
8. Produce a structured review with prioritized findings.
9. Always limit conclusions to available evidence.
## MFEM-specific review checklist
- Component-aware scope: identify the touched subsystem (FEM, solvers, preconditioners, linear algebra, mesh, examples, miniapps, build, or docs) and assess its impact against the review pillars.
- Numerical and algorithmic behavior: assess issues in convergence, stability, tolerances, precision, iteration limits, and failure handling. If clear opportunities exist to improve the algorithmic approach, call them out with expected impact.
- API and user-facing impact: assess backward compatibility, user-visible behavior and default changes, migration impact, deprecations, and whether documentation clearly explains user-facing API changes.
- Data structure and memory semantics: assess ownership, lifetime, aliasing, container behavior, and device-host synchronization.
- Parallel and serial behavior: assess whether the change preserves equivalent semantics in serial and parallel modes where applicable; if logic is currently mode-specific, check whether extension to the other mode is straightforward (clear abstractions, no hard-wired assumptions), document constraints, and call out expected behavior differences explicitly.
- Backend and portability impact: assess likely cross-backend risks in CPU, CUDA, HIP, OCCA, RAJA, partial assembly, fallback paths, compiler compatibility, and platform assumptions.
- Build, dependency, and configuration impact: assess CMake or make changes, optional dependency behavior, and feature-flag interactions.
- Tests and docs alignment: check available regression or unit coverage evidence for changed behavior, and ensure docs are updated for new flags, APIs, options, or behavior changes.
- MFEM developer-guideline fit: keep code lean, simple, general, logically separated, and portable; suggest C++17 improvements when they clearly improve safety, clarity, or maintainability.
- New source files, examples, or miniapps: if a PR adds source/header files, verify they are properly wired into the relevant `makefile` and `CMakeLists.txt`, referenced in docs where applicable (including `doc/CodeDocumentation.dox`), and added to top-level `.gitignore` only when generated artifacts require it.
- Changelog: verify `CHANGELOG` is updated if the PR introduces significant new features or user-facing changes.
- MFEM conventions: use `real_t`; use `mfem::out`/`mfem::err` instead of `std::cout`/`std::cerr` in library code; flag large/binary files; if AI assistance is apparent but undisclosed, suggest following `CONTRIBUTING.md`.
- Edge cases: if the PR touches complex or error-prone areas, suggest additional tests for edge cases, failure modes, and parallel behavior.
## Commenting guidelines
- Keep comments concise, actionable, and grounded in the diff.
- Focus on correctness, behavior changes, and user impact over style nits.
- Be professional, concise, collaborative, technically precise, and avoid unsupported assumptions.
+1 -1
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@@ -13,7 +13,7 @@ Note that some of these scripts use the shared MFEM GitHub Actions from the exte
<https://github.com/mfem/github-actions>
For a particular action, e.g. `mfem/github-actions/build-mfem@v2.5`, the `v2.5` suffix denotes the branch (or tag) in the above from which the action is taken.
For a particular action, e.g. `mfem/github-actions/build-mfem@v2.5`, the `v2.5` suffix denotes the branch in the above from which the action is taken.
The current CI workflows are:
+1 -1
View File
@@ -43,7 +43,7 @@ jobs:
remove-docker-images: 'true'
- name: Checkout
uses: actions/checkout@v6
uses: actions/checkout@v4
# It's easier to reference named variables than indexes of the matrix
- name: Set Environment
+28 -25
View File
@@ -40,7 +40,6 @@ env:
METIS_ARCHIVE_MAC: metis-4.0.3-mac.tgz
METIS_TOP_DIR: metis-4.0.3
MFEM_TOP_DIR: mfem
MFEM_ACTIONS_VERSION: v2.7
# Note for future improvements:
#
@@ -133,14 +132,12 @@ jobs:
hypre-target: int32
precision: fp64
enzyme: true
config-opts: MFEM_USE_ENZYME=YES ENZYME_DIR=$(brew --prefix enzyme) LDFLAGS=-L$LLVM_PREFIX/lib/c++
config-opts: MFEM_USE_ENZYME=YES ENZYME_DIR=$(brew --prefix enzyme)
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}${{ matrix.enzyme && '-enzyme' || '' }}
runs-on: ${{ matrix.os }}
continue-on-error: ${{ matrix.enzyme && true || false }}
steps:
# Fix 'No space left on device' errors for Ubuntu builds.
- name: Run Actions Cleaner
@@ -154,7 +151,7 @@ jobs:
# /home/runner/work/mfem/mfem/mfem
# Note: Done now to access "install-hypre" and "install-metis" actions.
- name: checkout mfem
uses: actions/checkout@v6
uses: actions/checkout@v4
with:
path: ${{ env.MFEM_TOP_DIR }}
# Fetch the complete history for codecov to access commits ID
@@ -171,6 +168,17 @@ jobs:
env
shell: bash
- name: Xcode version setup (MacOS)
if: matrix.os == 'macos-latest'
run: |
XCODE_PATH="/Applications/Xcode_15.3.app"
echo "> sudo xcode-select -s ${XCODE_PATH}"
sudo xcode-select -s ${XCODE_PATH}
echo "> g++ -v"
g++ -v
echo "> clang++ -v"
clang++ -v
# Only get MPI if defined for the job.
# TODO: It would be nice to have only one step, e.g. with a dedicated
# action, but I (@adrienbernede) don't see how at the moment.
@@ -212,14 +220,14 @@ jobs:
- name: cache hypre
id: hypre-cache
if: matrix.mpi == 'par'
uses: actions/cache@v5
uses: actions/cache@v4
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-${{ env.MFEM_ACTIONS_VERSION }}
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-${{ matrix.precision }}-v2.5
- name: get hypre
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.7
uses: mfem/github-actions/build-hypre@v2.5
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
@@ -229,7 +237,7 @@ jobs:
- name: get hypre (Windows)
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.7
uses: mfem/github-actions/build-hypre@v2.5
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
@@ -242,14 +250,14 @@ jobs:
- name: cache metis
id: metis-cache
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
uses: actions/cache@v5
uses: actions/cache@v4
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-${{ env.MFEM_ACTIONS_VERSION }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
- name: install metis
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.7
uses: mfem/github-actions/build-metis@v2.5
with:
archive: ${{ matrix.os != 'macos-latest' && env.METIS_ARCHIVE || env.METIS_ARCHIVE_MAC }}
dir: ${{ env.METIS_TOP_DIR }}
@@ -257,7 +265,7 @@ jobs:
- name: cache vcpkg (Windows)
id: vcpkg-cache
if: matrix.os == 'windows-latest'
uses: actions/cache@v5
uses: actions/cache@v4
with:
path: vcpkg_cache
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
@@ -281,17 +289,14 @@ jobs:
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew update
brew install enzyme
ENZYME_LLVM=$(brew info enzyme | sed -n 's/^Required.*:.*\(llvm[^ ]*\).*/\1/p')
echo "ENZYME_LLVM=$ENZYME_LLVM"
LLVM_PREFIX=$(brew --prefix $ENZYME_LLVM)
echo "LLVM_PREFIX=$LLVM_PREFIX" >> $GITHUB_ENV
echo "OMPI_CC=$LLVM_PREFIX/bin/clang" >> $GITHUB_ENV
echo "OMPI_CXX=$LLVM_PREFIX/bin/clang++" >> $GITHUB_ENV
brew install llvm@19 enzyme
echo "LLVM_PREFIX=$(brew --prefix llvm@19)" >> $GITHUB_ENV
echo "OMPI_CC=$(brew --prefix llvm@19)/bin/clang" >> $GITHUB_ENV
echo "OMPI_CXX=$(brew --prefix llvm@19)/bin/clang++" >> $GITHUB_ENV
# MFEM build and test
- name: build
uses: mfem/github-actions/build-mfem@v2.7
uses: mfem/github-actions/build-mfem@v2.5
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
with:
@@ -362,10 +367,8 @@ jobs:
# Code coverage (process and upload reports)
- name: codecov
if: matrix.codecov == 'YES'
uses: mfem/github-actions/upload-coverage@v2.7
uses: mfem/github-actions/upload-coverage@v2.5
with:
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}-${{ matrix.precision }}
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
project_dir: ${{ env.MFEM_TOP_DIR }}
directories: "fem general linalg mesh"
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+4 -4
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@@ -40,11 +40,11 @@ jobs:
steps:
- name: Checkout repository
uses: actions/checkout@v6
uses: actions/checkout@v4
# Initializes the CodeQL tools for scanning.
- name: Initialize CodeQL
uses: github/codeql-action/init@v4
uses: github/codeql-action/init@v2
with:
languages: ${{ matrix.language }}
# If you wish to specify custom queries, you can do so here or in a config file.
@@ -57,7 +57,7 @@ jobs:
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
# If this step fails, then you should remove it and run the build manually (see below)
- name: Autobuild
uses: github/codeql-action/autobuild@v4
uses: github/codeql-action/autobuild@v2
# ️ Command-line programs to run using the OS shell.
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
@@ -70,4 +70,4 @@ jobs:
# ./location_of_script_within_repo/buildscript.sh
- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v4
uses: github/codeql-action/analyze@v2
+8 -10
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@@ -32,7 +32,6 @@ env:
METIS_ARCHIVE: metis-4.0.3.tar.gz
METIS_TOP_DIR: metis-4.0.3
COVERAGE_ENV: mfem-coverage
MFEM_ACTIONS_VERSION: v2.7
jobs:
gitignore:
@@ -40,7 +39,7 @@ jobs:
steps:
- name: checkout MFEM
uses: actions/checkout@v6
uses: actions/checkout@v4
with:
path: mfem
@@ -51,37 +50,36 @@ jobs:
- name: Cache Hypre Install
id: hypre-cache
uses: actions/cache@v5
uses: actions/cache@v4
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-int32-fp64-${{ env.MFEM_ACTIONS_VERSION }}
key: ${{ runner.os }}-ompi-build-${{ env.HYPRE_TOP_DIR }}-v2.5
- name: Get Hypre
if: steps.hypre-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.7
uses: mfem/github-actions/build-hypre@v2.5
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: int32
precision: fp64
- name: Cache Metis Install
id: metis-cache
uses: actions/cache@v5
uses: actions/cache@v4
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-${{ env.MFEM_ACTIONS_VERSION }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.5
- name: Install Metis
if: steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.7
uses: mfem/github-actions/build-metis@v2.5
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
# MFEM build and test
- name: build-mfem
uses: mfem/github-actions/build-mfem@v2.7
uses: mfem/github-actions/build-mfem@v2.5
with:
os: ${{ runner.os }}
target: opt
+4 -4
View File
@@ -38,7 +38,7 @@ jobs:
github.event.pull_request.head.repo.full_name != github.repository)
steps:
- name: checkout mfem
uses: actions/checkout@v6
uses: actions/checkout@v4
- name: copyright check
id: copyright
@@ -93,7 +93,7 @@ jobs:
github.event.pull_request.head.repo.full_name != github.repository)
steps:
- name: checkout mfem
uses: actions/checkout@v6
uses: actions/checkout@v4
- name: get astyle
run: |
@@ -110,7 +110,7 @@ jobs:
github.event.pull_request.head.repo.full_name != github.repository)
steps:
- name: checkout mfem
uses: actions/checkout@v6
uses: actions/checkout@v4
- name: get doxygen and graphviz
run: |
@@ -135,7 +135,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- name: checkout mfem
uses: actions/checkout@v6
uses: actions/checkout@v4
with:
fetch-depth: 0
+4 -8
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@@ -17,24 +17,20 @@ jobs:
runs-on: ubuntu-latest
name: 2.19.0
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v4
- uses: ./.github/actions/sanitize/config
with:
NO_FLAGS: true
- name: Cache
id: cache
uses: actions/cache@v5
uses: actions/cache@v4
with:
path: ${{env.HYPRE_DIR}}
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-${{ env.MFEM_ACTIONS_VERSION }}
key: ${{runner.os}}-ompi-build-${{env.HYPRE_DIR}}-int32-fp64-v2.5
- name: Setup
if: steps.cache.outputs.cache-hit != 'true'
uses: ./.github/actions/sanitize/mpi
with:
NO_FLAGS: true
- name: Build
if: steps.cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.7
uses: mfem/github-actions/build-hypre@v2.5
with:
archive: ${{env.HYPRE_TGZ}}
dir: ${{env.HYPRE_DIR}}
+2 -2
View File
@@ -27,13 +27,13 @@ jobs:
llvm_use_sanitizer: "Undefined"
name: ${{matrix.sanitizer}}
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v4
- uses: ./.github/actions/sanitize/config
with:
NO_FLAGS: true
- name: Cache
id: cache
uses: actions/cache@v5
uses: actions/cache@v4
with:
path: ${{env.LLVM_DIR}}
key: build-libcxx-${{env.LLVM_VER}}-${{matrix.sanitizer}}
+2 -2
View File
@@ -17,11 +17,11 @@ jobs:
runs-on: ubuntu-latest
name: lsan.supp
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v4
- uses: ./.github/actions/sanitize/config
- name: Cache
id: cache
uses: actions/cache@v5
uses: actions/cache@v4
with:
path: ${{env.LSAN_DIR}}
key: build-lsan-suppression-file
+4 -8
View File
@@ -17,24 +17,20 @@ jobs:
runs-on: ubuntu-latest
name: 4.0.3
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v4
- uses: ./.github/actions/sanitize/config
with:
NO_FLAGS: true
- name: Cache
id: cache
uses: actions/cache@v5
uses: actions/cache@v4
with:
path: ${{env.METIS_DIR}}
key: ${{runner.os}}-build-${{env.METIS_DIR}}-${{env.MFEM_ACTIONS_VERSION}}
key: ${{runner.os}}-build-${{env.METIS_DIR}}-v2.5
- name: Setup
if: steps.cache.outputs.cache-hit != 'true'
uses: ./.github/actions/sanitize/mpi
with:
NO_FLAGS: true
- name: Build
if: steps.cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.7
uses: mfem/github-actions/build-metis@v2.5
with:
archive: ${{env.METIS_TGZ}}
dir: ${{env.METIS_DIR}}
+9 -9
View File
@@ -28,7 +28,7 @@ jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v4
- uses: ./.github/actions/sanitize/mfem
with:
par: ${{inputs.par}}
@@ -40,7 +40,7 @@ jobs:
env:
ex: ${{inputs.par && 'ex1p' || 'ex1'}}
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v4
- uses: ./.github/actions/sanitize/restore
id: restore
with:
@@ -58,7 +58,7 @@ jobs:
env:
exclude: ${{inputs.par && '-E "_ser"' || ''}}
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v4
- uses: ./.github/actions/sanitize/restore
id: restore
with:
@@ -82,7 +82,7 @@ jobs:
env:
exclude: ${{inputs.par && '-E "_ser"' || ''}}
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v4
- uses: ./.github/actions/sanitize/restore
id: restore
with:
@@ -107,7 +107,7 @@ jobs:
run: ${{inputs.par && '-R "_cpu_np"' || ''}}
exclude: ${{inputs.par && '"unit_tests|debug"' || '"^unit_tests$|debug"'}}
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v4
- uses: ./.github/actions/sanitize/restore
id: restore
with:
@@ -131,7 +131,7 @@ jobs:
env:
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v4
- uses: ./.github/actions/sanitize/restore
id: restore
with:
@@ -146,7 +146,7 @@ jobs:
if: ${{steps.restore.outputs.cache-hit != 'true'}}
working-directory: mfem/build/tests/unit
run: find . -type f -name '*.o' -delete
- uses: actions/upload-artifact@v7
- uses: actions/upload-artifact@v4
with:
name: tests-${{inputs.par}}-${{inputs.sanitizer}}
path: mfem/build/tests/unit/${{env.unit_tests}}
@@ -165,14 +165,14 @@ jobs:
unit_tests: ${{inputs.par && 'punit_tests' || 'unit_tests'}}
np: ${{inputs.par && '_np=2' || ''}}
steps:
- uses: actions/checkout@v6
- uses: actions/checkout@v4
- uses: ./.github/actions/sanitize/restore
id: restore
with:
par: ${{inputs.par}}
sanitizer: ${{inputs.sanitizer}}
cache-path: mfem/build/tests/unit/${{env.unit_tests}}
- uses: actions/download-artifact@v8
- uses: actions/download-artifact@v4
if: ${{steps.restore.outputs.cache-hit != 'true'}}
with:
name: tests-${{inputs.par}}-${{inputs.sanitizer}}
-44
View File
@@ -29,47 +29,3 @@ jobs:
operations-per-run: 500
exempt-issue-labels: "bug,WIP,ready-for-review,in-review,in-next"
exempt-pr-labels: "bug,WIP,ready-for-review,in-review,in-next"
# Stale action for PRs with "in-review" label.
stale-in-review-pr:
runs-on: ubuntu-latest
permissions:
issues: write
pull-requests: write
actions: write
steps:
- uses: actions/stale@v9
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
stale-pr-message: ':warning: This PR has been automatically marked as stale because it has not had any activity in the last 150 days. *If no activity occurs in the next 30 days, it will be automatically closed.* Thank you for your contributions.'
only-pr-labels: "in-review"
days-before-pr-stale: 150
days-before-pr-close: 30
days-before-issue-stale: -1
days-before-issue-close: -1
stale-pr-label: 'stale'
operations-per-run: 500
# Stale action for PRs with "WIP" label.
stale-wip-pr:
runs-on: ubuntu-latest
permissions:
issues: write
pull-requests: write
actions: write
steps:
- uses: actions/stale@v9
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
stale-pr-message: ':warning: This PR has been automatically marked as stale because it has not had any activity in the last 300 days. *If no activity occurs in the next 30 days, it will be automatically closed.* Thank you for your contributions.'
only-pr-labels: "WIP"
days-before-pr-stale: 300
days-before-pr-close: 30
days-before-issue-stale: -1
days-before-issue-close: -1
stale-pr-label: 'stale'
operations-per-run: 500
+16 -52
View File
@@ -19,15 +19,9 @@ CMakeFiles/
# Clangd server cache
*.cache*
#vscode settings
/.vscode/
# Backup files
*~
# clangd index
/.cache/
# Default install location
/mfem/
@@ -85,17 +79,12 @@ examples/sol_u.*
examples/sol_p.*
examples/sol_r.*
examples/sol_i.*
examples/sol_z.*
examples/ex6p-checkpoint.*
examples/order.*
examples/ex9.mesh
examples/ex9-mesh.*
examples/ex9-init.*
examples/ex9-final.*
examples/ex41.mesh
examples/ex41-mesh.*
examples/ex41-init.*
examples/ex41-final.*
examples/deformed.*
examples/velocity.*
examples/elastic_energy.*
@@ -219,16 +208,10 @@ miniapps/electromagnetics/volta
miniapps/electromagnetics/tesla
miniapps/electromagnetics/maxwell
miniapps/electromagnetics/joule
miniapps/electromagnetics/lorentz
miniapps/electromagnetics/Volta-AMR*
miniapps/electromagnetics/Tesla-AMR*
miniapps/electromagnetics/Maxwell-Parallel*
miniapps/electromagnetics/Joule_[0-9]*
miniapps/electromagnetics/Lorentz_[0-9]*
miniapps/electromagnetics/Lorentz.dat
miniapps/fluids/schrodinger-flow/schrodinger_flow
miniapps/fluids/schrodinger-flow/pschrodinger_flow
miniapps/electromagnetics/Joule_*
miniapps/gslib/field-diff
miniapps/gslib/field-interp
@@ -237,7 +220,6 @@ miniapps/gslib/pfindpts
miniapps/gslib/schwarz_ex1
miniapps/gslib/schwarz_ex1p
miniapps/gslib/interpolated.gf
miniapps/gslib/particles_redist
miniapps/meshing/mobius-strip
miniapps/meshing/klein-bottle
@@ -284,8 +266,10 @@ miniapps/meshing/refined.mesh
miniapps/meshing/bounding-box*
miniapps/meshing/jacobian-determinant*
miniapps/mtop/ParaView/
miniapps/mtop/mtop_test_iso_elasticity
miniapps/mtop/parheat
miniapps/mtop/ParHeat*
miniapps/mtop/seqheat
miniapps/mtop/SeqHeat*
miniapps/autodiff/paradiff
miniapps/autodiff/seqadiff
@@ -293,28 +277,23 @@ miniapps/autodiff/seqtest
miniapps/autodiff/par_example
miniapps/autodiff/seq_example
miniapps/autodiff/seq_test
miniapps/autodiff/Example/*
miniapps/autodiff/Exampl*
miniapps/fluids/navier/navier_mms
miniapps/fluids/navier/navier_kovasznay
miniapps/fluids/navier/navier_kovasznay_vs
miniapps/fluids/navier/navier_tgv
miniapps/fluids/navier/navier_shear
miniapps/fluids/navier/navier_3dfoc
miniapps/fluids/navier/navier_turbchan
miniapps/fluids/navier/navier_cht
miniapps/fluids/navier/navier_bifurcation
miniapps/fluids/navier/Navier_Bifurcation_[0-9]*
miniapps/fluids/navier/ParaView
miniapps/fluids/navier/tgv_out*.txt
miniapps/fluids/navier/*_output
miniapps/navier/navier_mms
miniapps/navier/navier_kovasznay
miniapps/navier/navier_kovasznay_vs
miniapps/navier/navier_tgv
miniapps/navier/navier_shear
miniapps/navier/navier_3dfoc
miniapps/navier/navier_turbchan
miniapps/navier/navier_cht
miniapps/navier/tgv_out*.txt
miniapps/navier/*_output
miniapps/nurbs/nurbs_ex1
miniapps/nurbs/nurbs_ex1p
miniapps/nurbs/nurbs_ex3
miniapps/nurbs/nurbs_ex5
miniapps/nurbs/nurbs_ex10
miniapps/nurbs/nurbs_ex10p
miniapps/nurbs/nurbs_ex11p
miniapps/nurbs/nurbs_ex24
miniapps/nurbs/nurbs_solenoidal
@@ -340,14 +319,7 @@ miniapps/nurbs/nurbs_naca_cmesh
miniapps/nurbs/naca-cmesh.mesh
miniapps/nurbs/glvis_naca-cmesh.mesh
miniapps/nurbs/Naca_cmesh
miniapps/nurbs/nurbs_mesh_info
miniapps/nurbs/k*_*.dat
miniapps/nurbs/*-Surface.mesh
miniapps/nurbs/*.mesh
miniapps/nurbs/*.sol
miniapps/nurbs/deformed.*
miniapps/nurbs/elastic_energy.*
miniapps/nurbs/velocity.*
miniapps/performance/ex1
miniapps/performance/ex1p
@@ -369,7 +341,6 @@ miniapps/shifted/lsf_integral
miniapps/tools/display-basis
miniapps/tools/load-dc
miniapps/tools/convert-dc
miniapps/tools/compare-dc
miniapps/tools/gridfunction-bounds
miniapps/tools/lor-transfer
miniapps/tools/plor-transfer
@@ -440,13 +411,6 @@ miniapps/tribol/contact-patch-test
miniapps/diag-smoothers/abs-l1-jacobi
miniapps/diag-smoothers/mg-abs-l1-jacobi
miniapps/contact/contact
miniapps/contact/ParaView
miniapps/plasma/pic/electrostatic-*
!miniapps/plasma/pic/electrostatic-*.cpp
miniapps/plasma/pic/*.csv
# Unit test binary and outputs
tests/unit/output_meshes
tests/unit/unit_tests
+70 -529
View File
@@ -9,550 +9,91 @@
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# DESCRIPTION:
###############################################################################
# General GitLab pipelines configurations for supercomputers and Linux clusters
# at Lawrence Livermore National Laboratory (LLNL).
# This entire pipeline is LLNL-specific
#
# Important note: This file is a template provided by llnl/radiuss-shared-ci.
# Remains to set variable values, change the reference to the radiuss-shared-ci
# repo, opt-in and out optional features. The project can then extend it with
# additional stages.
#
# In addition, each project should copy over and complete:
# - .gitlab/custom-jobs-and-variables.yml
# - .gitlab/subscribed-pipelines.yml
#
# The jobs should be specified in a file local to the project,
# - .gitlab/jobs/${CI_MACHINE}.yml
# or generated (see LLNL/Umpire for an example).
###############################################################################
# MAP OF GITLAB CI
#######################
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# File dependencies: direct, through jobs, through variables
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# .gitlab-ci.yml
# ├── .build-and-test [job]
# │ ├── .gitlab/custom-jobs-and-variables.yml
# │ │ ├── .custom_job [job]
# │ │ ├── .reproducer_vars [job]
# │ │ ├── .report_job_success [job]
# │ │ │ └── .gitlab/scripts/report_build_and_test [script]
# │ │ │ ├── .gitlab/scripts/safe_create_rundir [script]
# │ │ │ └── .gitlab/scripts/git_try_to_push [script]
# │ │ ├── .report_job_failure [job]
# │ │ │ └── .gitlab/scripts/report_build_and_test [script]
# │ │ │ ├── .gitlab/scripts/safe_create_rundir [script]
# │ │ │ └── .gitlab/scripts/git_try_to_push [script]
# │ │ └── JOB_CMD [var]
# │ │ └── tests/gitlab/build_and_test [script]
# │ │ └── tests/gitlab/get_mfem_uberenv [script]
# │ ├── <radiuss-shared-ci>/pipelines/matrix.yml [conditional]
# │ │ ├── .on_matrix [job]
# │ │ ├── .matrix_reproducer_init [job]
# │ │ ├── .matrix_reproducer_vars [job]
# │ │ ├── .matrix_reproducer_job [job]
# │ │ ├── .matrix_job_command [job]
# │ │ └── .job_on_matrix [job]
# │ ├── <radiuss-shared-ci>/pipelines/dane.yml [conditional]
# │ │ ├── .on_dane [job]
# │ │ ├── .dane_reproducer_init [job]
# │ │ ├── .dane_reproducer_vars [job]
# │ │ ├── .dane_reproducer_job [job]
# │ │ ├── .dane_job_command [job]
# │ │ ├── .job_on_dane [job]
# │ │ ├── allocate_resources [job]
# │ │ └── release_resources [job]
# │ ├── <radiuss-shared-ci>/pipelines/tioga.yml [conditional]
# │ │ ├── .on_tioga [job]
# │ │ ├── .tioga_reproducer_init [job]
# │ │ ├── .tioga_reproducer_vars [job]
# │ │ ├── .tioga_reproducer_job [job]
# │ │ ├── .tioga_job_command [job]
# │ │ ├── .job_on_tioga [job]
# │ │ ├── allocate_resources [job]
# │ │ └── release_resources [job]
# │ ├── <artifact>/matrix-jobs.yml [conditional, from 'generate-job-lists']
# │ │ ├── .gitlab/jobs/matrix.yml
# │ │ │ ├── .matrix_reproducer_vars [job]
# │ │ │ ├── setup [job]
# │ │ │ │ └── ./tests/gitlab/build_and_test_setup [script]
# │ │ │ ├── opt_mpi_cuda_gcc [job]
# │ │ │ └── opt_mpi_cuda_hypre_cuda_gcc [job]
# │ │ └── .gitlab/jobs/matrix-reports.yml [used conditionally]
# │ │ ├── report_job_success
# │ │ └── report_job_failure
# │ ├── <artifact>/dane-jobs.yml [conditional, from 'generate-job-lists']
# │ │ ├── .gitlab/jobs/dane.yml
# │ │ │ ├── .dane_reproducer_vars [job]
# │ │ │ ├── setup [job]
# │ │ │ │ └── ./tests/gitlab/build_and_test_setup [script]
# │ │ │ ├── debug_ser_gcc_10 [job]
# │ │ │ ├── debug_par_gcc_10 [job]
# │ │ │ ├── opt_ser_gcc_10 [job]
# │ │ │ ├── opt_par_gcc_10 [job]
# │ │ │ ├── opt_par_gcc_10_sundials [job]
# │ │ │ ├── opt_par_gcc_10_petsc [job]
# │ │ │ └── opt_par_gcc_10_pumi [job]
# │ │ └── .gitlab/jobs/dane-reports.yml [used conditionally]
# │ │ ├── report_job_success
# │ │ └── report_job_failure
# │ └── <artifact>/tioga-jobs.yml [conditional, from 'generate-job-lists']
# │ ├── .gitlab/jobs/tioga.yml
# │ │ ├── .tioga_reproducer_vars [job]
# │ │ ├── setup [job]
# │ │ │ └── ./tests/gitlab/build_and_test_setup [script]
# │ │ └── cce_16_0_1 [job]
# │ └── .gitlab/jobs/tioga-reports.yml [used conditionally]
# │ ├── report_job_success
# │ └── report_job_failure
# └── .gitlab/subscribed-pipelines.yml
# ├── .machine-check [job]
# ├── generate-job-lists [job]
# ├── dane-up-check [job]
# ├── dane-build-and-test [job]
# ├── dane-baseline [job]
# │ └── .gitlab/dane-baseline.yml
# │ ├── .on_dane [job]
# │ ├── baselinecheck_mfem_intel_dane [job]
# │ │ └── .gitlab/scripts/baseline [script]
# │ ├── cleanup [job]
# │ ├── report_baseline [job]
# │ │ ├── .gitlab/scripts/safe_create_rundir [script]
# │ │ └── .gitlab/scripts/git_try_to_push [script]
# │ ├── baselinepublish_mfem_dane [job]
# │ │ └── .gitlab/scripts/rebaseline [script]
# │ ├── .gitlab/custom-jobs-and-variables.yml
# │ │ └── <same as above: see .gitlab-ci.yml/.build-and-test>
# │ └── .gitlab/configs/setup-baseline.yml
# │ └── setup_baseline [job]
# ├── tioga-up-check [job]
# ├── tioga-build-and-test [job]
# ├── matrix-up-check [job]
# └── matrix-build-and-test [job]
#
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# File tree hierarchy with file contents highlights
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# In addition to the files in the MFEM repo, the Gitlab CI uses files from the
# radiuss/radiuss-shared-ci project, see below, after the <mfem-root> tree.
#
# <mfem root>
# ├── .gitlab-ci.yml [this file]
# │ ├── <jobs>
# │ │ └── .build-and-test
# │ ├── <included files>
# │ │ ├── .gitlab/subscribed-pipelines.yml
# │ │ ├── .gitlab/custom-jobs-and-variables.yml [by ".build-and-test"]
# │ │ ├── <artifact> [by ".build-and-test"]
# │ │ │ ├── artifact: '${CI_MACHINE}-jobs.yml'
# │ │ │ └── job: 'generate-job-lists'
# │ │ └── <external> [by ".build-and-test"]
# │ │ ├── project: 'radiuss/radiuss-shared-ci'
# │ │ ├── ref: 'v2025.09.1'
# │ │ └── file: 'pipelines/${CI_MACHINE}.yml'
# │ └── <defined variables>
# │ ├── CUSTOM_CI_BUILDS_DIR
# │ ├── USER_CI_TOP_DIR
# │ ├── SHARED_REPOS_DIR
# │ ├── AUTOTEST_ROOT
# │ ├── MFEM_DATA_DIR
# │ ├── AUTOTEST
# │ ├── AUTOTEST_COMMIT
# │ ├── REBASELINE
# │ ├── GITHUB_PROJECT_NAME
# │ └── GITHUB_PROJECT_ORG
# ├── .gitlab
# │ ├── configs
# │ │ └── setup-baseline.yml
# │ │ ├── <jobs>
# │ │ │ └── setup_baseline
# │ │ └── <used variables>
# │ │ ├── MACHINE_NAME
# │ │ ├── REBASELINE
# │ │ ├── AUTOTEST
# │ │ ├── AUTOTEST_COMMIT
# │ │ ├── BUILD_ROOT
# │ │ ├── TPLS_REPO
# │ │ ├── TESTS_REPO
# │ │ ├── AUTOTEST_ROOT
# │ │ └── AUTOTEST_REPO
# │ ├── jobs
# │ │ ├── matrix-reports.yml
# │ │ │ ├── <jobs>
# │ │ │ │ ├── report_job_success
# │ │ │ │ └── report_job_failure
# │ │ │ └── <used jobs>
# │ │ │ ├── .on_matrix
# │ │ │ ├── .report_job_success
# │ │ │ └── .report_job_failure
# │ │ ├── matrix.yml
# │ │ │ ├── <jobs>
# │ │ │ │ ├── .matrix_reproducer_vars
# │ │ │ │ ├── setup
# │ │ │ │ ├── opt_mpi_cuda_gcc
# │ │ │ │ └── opt_mpi_cuda_hypre_cuda_gcc
# │ │ │ ├── <used jobs>
# │ │ │ │ ├── .reproducer_vars
# │ │ │ │ ├── .on_matrix
# │ │ │ │ └── .job_on_matrix
# │ │ │ ├── <included and used files>
# │ │ │ │ └── tests/gitlab/build_and_test_setup [by "setup"]
# │ │ │ └── <defined variables>
# │ │ │ └── SPEC
# │ │ ├── dane-reports.yml
# │ │ │ ├── <jobs>
# │ │ │ │ ├── report_job_success
# │ │ │ │ └── report_job_failure
# │ │ │ └── <used jobs>
# │ │ │ ├── .on_dane
# │ │ │ ├── .report_job_success
# │ │ │ └── .report_job_failure
# │ │ ├── dane.yml
# │ │ │ ├── <jobs>
# │ │ │ │ ├── .dane_reproducer_vars
# │ │ │ │ ├── setup
# │ │ │ │ ├── debug_ser_gcc_10
# │ │ │ │ ├── debug_par_gcc_10
# │ │ │ │ ├── opt_ser_gcc_10
# │ │ │ │ ├── opt_par_gcc_10
# │ │ │ │ ├── opt_par_gcc_10_sundials
# │ │ │ │ ├── opt_par_gcc_10_petsc
# │ │ │ │ └── opt_par_gcc_10_pumi
# │ │ │ ├── <used jobs>
# │ │ │ │ ├── .reproducer_vars
# │ │ │ │ ├── .on_dane
# │ │ │ │ └── .job_on_dane
# │ │ │ ├── <included and used files>
# │ │ │ │ └── tests/gitlab/build_and_test_setup [by "setup"]
# │ │ │ └── <defined variables>
# │ │ │ ├── SPEC
# │ │ │ └── THREADS
# │ │ ├── tioga-reports.yml
# │ │ │ ├── <jobs>
# │ │ │ │ ├── report_job_success
# │ │ │ │ └── report_job_failure
# │ │ │ └── <used jobs>
# │ │ │ ├── .on_tioga
# │ │ │ ├── .report_job_success
# │ │ │ └── .report_job_failure
# │ │ └── tioga.yml
# │ │ ├── <jobs>
# │ │ │ ├── .tioga_reproducer_vars
# │ │ │ ├── setup
# │ │ │ └── opt_mpi_rocm_hypre_rocm
# │ │ ├── <used jobs>
# │ │ │ ├── .reproducer_vars
# │ │ │ ├── .on_tioga
# │ │ │ └── .job_on_tioga
# │ │ ├── <included and used files>
# │ │ │ └── tests/gitlab/build_and_test_setup [by "setup"]
# │ │ └── <defined variables>
# │ │ ├── SPEC
# │ │ └── THREADS
# │ ├── scripts
# │ │ ├── baseline
# │ │ │ └── <used variables>
# │ │ │ ├── BASELINE_TEST
# │ │ │ ├── SYS_TYPE
# │ │ │ ├── MACHINE_NAME
# │ │ │ ├── CI_PROJECT_DIR
# │ │ │ ├── ARTIFACTS_DIR
# │ │ │ ├── BUILD_ROOT
# │ │ │ └── TPLS_DIR
# │ │ ├── git_try_to_push
# │ │ ├── rebaseline
# │ │ │ └── <used variables>
# │ │ │ ├── CI_PROJECT_DIR
# │ │ │ ├── ARTIFACTS_DIR
# │ │ │ ├── SYS_TYPE
# │ │ │ ├── BUILD_ROOT
# │ │ │ ├── MACHINE_NAME
# │ │ │ └── CI_PIPELINE_ID
# │ │ ├── report_build_and_test
# │ │ │ ├── <used files>
# │ │ │ │ ├── .gitlab/scripts/safe_create_rundir
# │ │ │ │ └── .gitlab/scripts/git_try_to_push
# │ │ │ └── <used variables>
# │ │ │ ├── AUTOTEST_ROOT
# │ │ │ ├── CI_COMMIT_REF_SLUG
# │ │ │ ├── CI_PROJECT_DIR
# │ │ │ ├── CI_PIPELINE_URL
# │ │ │ ├── AUTOTEST_COMMIT
# │ │ │ └── CI_MACHINE
# │ │ └── safe_create_rundir
# │ ├── custom-jobs-and-variables.yml
# │ │ ├── <jobs>
# │ │ │ ├── .custom_job
# │ │ │ ├── .reproducer_vars
# │ │ │ ├── .report_job_success
# │ │ │ └── .report_job_failure
# │ │ ├── <used files>
# │ │ │ ├── tests/gitlab/build_and_test [in JOB_CMD]
# │ │ │ └── .gitlab/scripts/report_build_and_test [by .report_job_*]
# │ │ ├── <defined variables>
# │ │ │ ├── JOB_CMD
# │ │ │ ├── BUILD_ROOT
# │ │ │ ├── ALLOC_NAME
# │ │ │ ├── TPLS_REPO
# │ │ │ ├── TESTS_REPO
# │ │ │ ├── AUTOTEST_REPO
# │ │ │ ├── MFEM_DATA_REPO
# │ │ │ ├── ARTIFACTS_DIR: artifacts
# │ │ │ ├── SLURM_OVERLAP: 1
# │ │ │ ├── DANE_SHARED_ALLOC
# │ │ │ ├── DANE_JOB_ALLOC
# │ │ │ ├── TIOGA_SHARED_ALLOC
# │ │ │ ├── TIOGA_JOB_ALLOC
# │ │ │ └── MATRIX_JOB_ALLOC
# │ │ └── <used variables>
# │ │ ├── SPEC
# │ │ ├── BUILD_ROOT
# │ │ └── ...
# │ ├── dane-baseline.yml
# │ │ ├── <jobs>
# │ │ │ ├── .on_dane
# │ │ │ ├── baselinecheck_mfem_intel_dane
# │ │ │ ├── cleanup
# │ │ │ ├── report_baseline
# │ │ │ └── baselinepublish_mfem_dane
# │ │ ├── <included and used files>
# │ │ │ ├── .gitlab/custom-jobs-and-variables.yml
# │ │ │ ├── .gitlab/configs/setup-baseline.yml
# │ │ │ ├── .gitlab/scripts/rebaseline
# │ │ │ ├── .gitlab/scripts/baseline
# │ │ │ └── .gitlab/scripts/git_try_to_push
# │ │ ├── <defined variables>
# │ │ │ ├── BASELINE_TEST: baseline
# │ │ │ ├── MACHINE_NAME: dane
# │ │ │ ├── TPLS_DIR
# │ │ │ └── export MFEM_TEST_NP
# │ │ └── <used variables>
# │ │ ├── ON_DANE
# │ │ ├── AUTOTEST [defined by .gitlab-ci.yml]
# │ │ ├── BUILD_ROOT [defined by custom-jobs-and-variables.yml]
# │ │ ├── TPLS_DIR [defined by this file]
# │ │ ├── ARTIFACTS_DIR [defined by custom-jobs-and-variables.yml]
# │ │ ├── MACHINE_NAME [defined by this file]
# │ │ ├── AUTOTEST_COMMIT [defined by .gitlab-ci.yml]
# │ │ ├── AUTOTEST_ROOT [defined by .gitlab-ci.yml]
# │ │ ├── BASELINE_TEST [defined by this file]
# │ │ └── REBASELINE [defined by .gitlab-ci.yml]
# │ └── subscribed-pipelines.yml
# │ ├── <jobs>
# │ │ ├── .machine-check
# │ │ ├── generate-job-lists
# │ │ ├── dane-up-check
# │ │ ├── dane-build-and-test
# │ │ ├── dane-baseline
# │ │ ├── tioga-up-check
# │ │ ├── tioga-build-and-test
# │ │ ├── matrix-up-check
# │ │ └── matrix-build-and-test
# │ ├── <used jobs>
# │ │ └── .build-and-test [from ".gitlab-ci.yml"]
# │ ├── <included files>
# │ │ └── .gitlab/dane-baseline.yml [by "dane-baseline"]
# │ └── <used variables>
# │ ├── GITHUB_PROJECT_ORG
# │ ├── GITHUB_PROJECT_NAME
# │ ├── AUTOTEST
# │ ├── AUTOTEST_COMMIT
# │ └── REBASELINE
# └── tests
# ├── gitlab
# │ ├── build_and_test
# │ │ ├── <builds and tests a given MFEM spec with uberenv>
# │ │ ├── <used files>
# │ │ │ ├── tests/uberenv/uberenv.py [deps mode, cloned]
# │ │ │ └── tests/gitlab/get_mfem_uberenv [deps mode]
# │ │ └── <used variables>
# │ │ ├── SYS_TYPE
# │ │ ├── THREADS [num. parallel jobs to build MFEM]
# │ │ ├── MODULE_LIST [modules to load]
# │ │ ├── CI_JOB_ID
# │ │ ├── USE_DEV_SHM
# │ │ ├── SPACK_DEBUG
# │ │ ├── DEBUG_MODE
# │ │ ├── REGISTRY_TOKEN
# │ │ ├── CI_REGISTRY_USER (defined by Gitlab)
# │ │ ├── USER
# │ │ ├── CI_REGISTRY_IMAGE (defined by Gitlab)
# │ │ └── CI_JOB_TOKEN (defined by Gitlab)
# │ ├── build_and_test_setup
# │ │ ├── <updates MFEM_DATA_REPO and AUTOTEST_REPO using locks>
# │ │ └── <used variables>
# │ │ ├── MFEM_DATA_REPO
# │ │ ├── SHARED_REPOS_DIR
# │ │ ├── AUTOTEST_REPO
# │ │ └── AUTOTEST_ROOT
# │ └── get_mfem_uberenv
# │ ├── <github.com/mfem/mfem-uberenv.git -> tests/uberenv>
# │ └── <defines the uberenv hash to use>
# └── uberenv [cloned by tests/gitlab/get_mfem_uberenv]
# └── uberenv.py
#
# <root of radiuss/radiuss-shared-ci, ref: 'v2025.09.1'>
# └── pipelines
# ├── matrix.yml
# │ ├── <jobs>
# │ │ ├── .on_matrix
# │ │ ├── .matrix_reproducer_init
# │ │ ├── .matrix_reproducer_vars
# │ │ ├── .matrix_reproducer_job
# │ │ ├── .matrix_job_command
# │ │ └── .job_on_matrix
# │ ├── <used jobs>
# │ │ └── .custom_job [from .gitlab/custom-jobs-and-variables.yml]
# │ └── <used variables>
# │ ├── ON_MATRIX
# │ ├── ADVANCED_JOB
# │ ├── ALL_TARGETS
# │ ├── SYS_TYPE
# │ ├── LLNL_SERVICE_USER
# │ ├── USER
# │ ├── GITHUB_PROJECT_NAME
# │ ├── GITHUB_PROJECT_ORG
# │ ├── MATRIX_JOB_ALLOC
# │ └── JOB_CMD
# ├── dane.yml
# │ ├── <jobs>
# │ │ ├── .on_dane
# │ │ ├── .dane_reproducer_init
# │ │ ├── .dane_reproducer_vars
# │ │ ├── .dane_reproducer_job
# │ │ ├── .dane_job_command
# │ │ ├── .job_on_dane
# │ │ ├── allocate_resources
# │ │ └── release_resources
# │ ├── <used jobs>
# │ │ └── .custom_job [from .gitlab/custom-jobs-and-variables.yml]
# │ ├── <defined variables>
# │ │ └── export JOBID
# │ └── <used variables>
# │ ├── ON_DANE
# │ ├── ADVANCED_JOB
# │ ├── ALL_TARGETS
# │ ├── SYS_TYPE
# │ ├── LLNL_SERVICE_USER
# │ ├── USER
# │ ├── GITHUB_PROJECT_NAME
# │ ├── GITHUB_PROJECT_ORG
# │ ├── DANE_JOB_ALLOC
# │ ├── JOB_CMD
# │ ├── JOBID
# │ ├── ALLOC_NAME
# │ └── DANE_SHARED_ALLOC
# └── tioga.yml
# ├── <jobs>
# │ ├── .on_tioga
# │ ├── .tioga_reproducer_init
# │ ├── .tioga_reproducer_vars
# │ ├── .tioga_reproducer_job
# │ ├── .tioga_job_command
# │ ├── .job_on_tioga
# │ ├── allocate_resources
# │ └── release_resources
# ├── <used jobs>
# │ └── .custom_job [from .gitlab/custom-jobs-and-variables.yml]
# ├── <defined variables>
# │ └── PROXY
# └── <used variables>
# ├── ON_TIOGA
# ├── ADVANCED_JOB
# ├── ALL_TARGETS
# ├── SYS_TYPE
# ├── LLNL_SERVICE_USER
# ├── USER
# ├── GITHUB_PROJECT_NAME
# ├── GITHUB_PROJECT_ORG
# ├── TIOGA_JOB_ALLOC
# ├── JOB_CMD
# ├── PROXY
# ├── ALLOC_NAME
# └── TIOGA_SHARED_ALLOC
# at Lawrence Livermore National Laboratory (LLNL). This entire pipeline is
# LLNL-specific!
include:
- project: 'lc-templates/id_tokens'
file: 'id_tokens.yml'
# The pipeline is divided into stages. Usually, jobs in a given stage wait for
# the preceding stages to complete before to start. However, we sometimes use
# the "needs" keyword and express the DAG of jobs for more efficiency.
# - We use setup and setup_baseline phases to download content outside of mfem
# directory.
# - Allocate/Release is where ruby resource are allocated/released once for all.
# - Build and Test is where we build and MFEM for multiple toolchains.
# - Baseline_checks gathers baseline-type test suites execution
# - Baseline_publish, only available on master, allows to update baseline
# results
stages:
- sub-pipelines
###############################################################################
# We define the following GitLab pipeline variables:
variables:
##### LC GITLAB CONFIGURATION
CUSTOM_CI_BUILDS_DIR: "/usr/workspace/mfem/gitlab-runner"
##### PROJECT VARIABLES
USER_CI_TOP_DIR: "${CUSTOM_CI_BUILDS_DIR}/${GITLAB_USER_LOGIN}"
SHARED_REPOS_DIR: "${USER_CI_TOP_DIR}/repos"
AUTOTEST_ROOT: "${SHARED_REPOS_DIR}"
# MFEM_DATA_DIR is setup in '.gitlab/configs/setup-build-and-test.yml' and
# used in '.gitlab/configs/<machine>-config.yml':
MFEM_DATA_DIR: "${SHARED_REPOS_DIR}/mfem-data"
# AUTOTEST: enable (ON/YES) or disable (any other value) test reporting. See
# also AUTOTEST_COMMIT.
AUTOTEST: "OFF"
# AUTOTEST_COMMIT: used only when AUTOTEST is set to ON/YES.
# * If AUTOTEST_COMMIT is set to ON/YES, reporting jobs will commit their
# files to the MFEM/autotest repo.
# * If AUTOTEST_COMMIT is NOT set to ON/YES, reporting jobs will NOT commit
# their files to the MFEM/autotest repo. Instead they will just show the
# contents of the report files and remove them.
AUTOTEST_COMMIT: "ON"
# REBASELINE:
# Defines the default choice for updating the saved baseline results. By default
# the baseline can only be updated from the master branch. This variable offers
# the option to manually ask for rebaselining from another branch if necessary.
REBASELINE: "OFF"
REBASELINE: "NO"
AUTOTEST: "NO"
# AUTOTEST_COMMIT: used only when AUTOTEST is set to YES.
# * If AUTOTEST_COMMIT is NOT set to NO, reporting jobs will commit their
# files to the MFEM/autotest repo.
# * If AUTOTEST_COMMIT is set to NO, reporting jobs will NOT commit their
# files to the MFEM/autotest repo. Instead they will just show the contents
# of the report files and remove them.
AUTOTEST_COMMIT: "YES"
##### SHARED_CI CONFIGURATION
# Required information about GitHub repository
GITHUB_PROJECT_NAME: "mfem"
GITHUB_PROJECT_ORG: "MFEM"
# Override the pattern describing branches that will skip the "draft PR filter
# test". Add protected branches here. See default value in
# preliminary-ignore-draft-pr.yml.
# ALWAYS_RUN_PATTERN: ""
###############################################################################
##### High level stages
# We organize the test-pipelines stage with sub-pipelines. Each sub-pipeline
# corresponds to a test batch on a given machine.
stages:
- prerequisites
- test-pipelines
###############################################################################
# Template for jobs triggering a build-and-test sub-pipeline:
.build-and-test:
stage: test-pipelines
# Trigger subpipelines:
ruby-build-and-test:
stage: sub-pipelines
variables:
# Explicitly pass down values that are not always propagated to child
# pipelines, e.g. when a variable is set in the "Settings -> CI" web
# interface (project variables).
# Note: in some cases, this does not work as expected, e.g. when the
# variable is not re-defined in the web interface; in such cases, the child
# pipeline gets a definition like '${AUTOTEST}', i.e. it behaves as if
# AUTOTEST is undefined, even though there is a default value in
# .gitlab-ci.yml.
# Explicitly pass down values that we want to be able to set when triggering
# pipelines manually or using scheduling
AUTOTEST: "${AUTOTEST}"
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
trigger:
include:
- local: '.gitlab/custom-jobs-and-variables.yml'
- project: 'radiuss/radiuss-shared-ci'
ref: 'v2025.09.1'
file: 'pipelines/${CI_MACHINE}.yml'
- artifact: '${CI_MACHINE}-jobs.yml'
job: 'generate-job-lists'
include: .gitlab/ruby-build-and-test.yml
strategy: depend
forward:
pipeline_variables: true
###############################################################################
include:
# Sets ID tokens for every job using `default:`
- project: 'lc-templates/id_tokens'
file: 'id_tokens.yml'
# [Optional] checks preliminary to running the actual CI test
#- project: 'radiuss/radiuss-shared-ci'
# ref: 'v2025.09.1'
# file: 'preliminary-ignore-draft-pr.yml'
# pipelines subscribed by the project
- local: '.gitlab/subscribed-pipelines.yml'
ruby-baseline:
stage: sub-pipelines
variables:
# Explicitly pass down values that we want to be able to set when triggering
# pipelines manually or using scheduling
REBASELINE: "${REBASELINE}"
AUTOTEST: "${AUTOTEST}"
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
trigger:
include: .gitlab/ruby-baseline.yml
strategy: depend
lassen-build-and-test:
stage: sub-pipelines
variables:
# Explicitly pass down values that we want to be able to set when triggering
# pipelines manually or using scheduling
AUTOTEST: "${AUTOTEST}"
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
trigger:
include: .gitlab/lassen-build-and-test.yml
strategy: depend
corona-build-and-test:
stage: sub-pipelines
variables:
# Explicitly pass down values that we want to be able to set when triggering
# pipelines manually or using scheduling
AUTOTEST: "${AUTOTEST}"
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
trigger:
include: .gitlab/corona-build-and-test.yml
strategy: depend
+14 -36
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@@ -15,18 +15,18 @@ and nightly testing on GitLab.
## Top level
The root configuration file is `.gitlab-ci.yml` at the root of MFEM repo. This
file only defines three stages, a prerequisites one, and two main stages in
which we trigger several sub-pipelines.
The root configuration file is `.gitlab-ci.yml` at the root of MFEM repo.
This file only defines one stage, in which we trigger several
sub-pipelines.
We use sub-pipelines to isolate the test for one combination of `machine`
and `test type`.
Machines typically include:
* Dane: Intel Sapphire Rapids
* Matrix: Intel Sapphire Rapids + Nvidia H100 GPU
* Tioga: AMD MI250X GPU
* Ruby: 2nd Gen Intel Xeon (Cascade Lake)
* Lassen: Power9 + Nvidia GPU
* Corona: AMD GPU
Test types include:
@@ -39,31 +39,9 @@ altering the scheduling, execution and displaying of the others.
## Sub-pipelines
### build-and-test
The build-and-test sub-pipelines leverage RADIUSS Shared CI to share most of
the CI implementation. RADIUSS Shared CI provides a shared CI infrastructure
vetted on most LC systems of interest and efficiently leveraging each machine
scheduler to increase CI throughput. The maintenance of RADIUSS Shared CI is
shared among several RADIUSS projects.
Jobs for the build-and-test sub-pipelines are defined in the jobs directory.
Because build-and-test jobs leverage Uberenv and Spack to build the
dependencies automatically, the jobs essentially consists in a `spack spec`
defined in the jobs files, and some scheduling parameters defined in the
`.gitlab/custom-jobs-and-variables.yml` file.
Build-and-test jobs all run the `tests/gitlab/build_and_test` script.
The build-and-test pipelines are controlled by the
`.gitlab/subscribed-pipelines.yml` which defines which machines to run on and
implements additional features like machine availability check, and job list
generation.
### baseline
Baseline sub-pipelines are described by files with names reflecting the
machine it runs on, e.g. `dane-baseline`.
Each file is this directory is the root configuration file for one
sub-pipeline. The naming reflects the corresponding couple (`machine`,
`test_type`).
Those files define the *stages* and the *jobs* for the sub-pipeline. They
also contain any configuration that cannot be shared. For the most part
@@ -85,11 +63,11 @@ usage function. This should be improved.
# More testing
## Adding a new target to a build-and-test pipeline
## Adding a new target to a build_and_test pipeline
`build-and-test` pipelines rely on Spack to install dependencies. Spack is
`build_and_test` pipelines rely on Spack to install dependencies. Spack is
driven by Uberenv which helps freezing Spack configuration: the goal being to
point to a specific commit in Spack and isolate its configuration so that it is
point to specific commit in Spack and isolate its configuration so that it is
not influenced by the user environment. More documentation about this can be
found in `tests/gitlab`.
@@ -98,13 +76,13 @@ with a spack spec of MFEM, within the limits permitted by the MFEM spack
package.
In any build-and-test sub-pipeline a job basically consists in defining the
spack spec to use. Adding a job on Dane for example resumes to:
spack spec to use. Adding a job on ruby for example resumes to:
```yaml
<job_name>:
variables:
SPEC: "<spack_spec>"
extends: .job_on_dane
extends: .build_and_test_on_ruby
```
The remaining and non trivial work is to make sure this spec is working. To
+40
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@@ -0,0 +1,40 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
include:
- project: 'lc-templates/id_tokens'
file: 'id_tokens.yml'
# We define the following GitLab pipeline variables:
variables:
# The path to the shared resource between all jobs. For example, external
# repositories like 'tests' and 'tpls' are cloned here. Also, 'tpls' is built
# once for all targets, so that build happen here. The BUILD_ROOT is unique to
# the pipeline, preventing any form of concurrency with other pipelines. This
# also means that the BUILD_ROOT directory will never be cleaned.
# TODO: add a clean-up mechanism
BUILD_ROOT: ${USER_CI_TOP_DIR}/${CI_PROJECT_NAME}-${MACHINE_NAME}-pipeline-${CI_PIPELINE_ID}
# On LLNL's ruby, there is only one allocation shared among jobs in order to
# save time and resource. This allocation has to be uniquely named so that we
# are sure to retrieve it.
ALLOC_NAME: ${CI_PROJECT_NAME}_ci_${CI_PIPELINE_ID}
# Git repositories used in the pipeline
TPLS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tpls.git
TESTS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tests.git
AUTOTEST_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/autotest.git
MFEM_DATA_REPO: https://github.com/mfem/data.git
# Directory used to place artifacts.
ARTIFACTS_DIR: artifacts
SLURM_OVERLAP: 1
+59
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@@ -0,0 +1,59 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# GitLab pipeline configuration for the Corona machine at LLNL
variables:
MACHINE_NAME: corona
.on_corona:
tags:
- shell
- corona
rules:
# Don't run corona jobs if...
# Note: This makes corona an "opt-in" machine. To activate builds on corona
# for a given GitLab clone of MFEM, go to Setting/CI-CD/variables, and set
# "ON_CORONA" to "ON". An LC account on for corona is required to trigger a
# pipeline there.
- if: '$CI_COMMIT_BRANCH =~ /_cnone/ || $ON_CORONA != "ON"'
when: never
# Don't run autotest update if...
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
when: never
# Report success on success status
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
when: on_success
# Report failure on failure status
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
when: on_failure
# Always release resource
- if: '$CI_JOB_NAME =~ /release_resource/'
when: always
# Always cleanup
- if: '$CI_JOB_NAME =~ /cleanup/'
when: always
# Default is to run if previous stage succeeded
- when: on_success
# Spack helped builds
# Generic corona build job, extending build script
.build_and_test_on_corona:
extends: [.on_corona]
stage: build_and_test
script:
# THREADS is used by 'tests/gitlab/build_and_test', run below
- export THREADS=12
- echo ${ALLOC_NAME}
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
- echo ${JOBID}
- echo ${MFEM_DATA_DIR}
- echo ${SPEC}
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 15 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
+48
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@@ -0,0 +1,48 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# GitLab pipelines configurations for the Lassen machine at LLNL
variables:
MACHINE_NAME: lassen
.on_lassen:
tags:
- shell
- lassen
rules:
- if: '$CI_COMMIT_BRANCH =~ /_lnone/ || $ON_LASSEN == "OFF"' #run except if ...
when: never
# Don't run autotest update if...
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
when: never
# Report success on success status
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
when: on_success
# Report failure on failure status
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
when: on_failure
# Always cleanup
- if: '$CI_JOB_NAME =~ /cleanup/'
when: always
- when: on_success
# Lassen uses a different job scheduler (spectrum lsf) that does not allow
# pre-allocation the same way slurm does. We use the pci queue on lassen
# to speed-up the allocation.
.build_and_test_on_lassen:
extends: [.on_lassen]
stage: build_and_test
script:
- echo ${MFEM_DATA_DIR}
- echo ${SPEC}
# Next script uses 'THREADS': leaving it empty --> it uses 'make all -j'
- lalloc 1 -W 45 -q pci --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
needs: [setup]
+77
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@@ -0,0 +1,77 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Jobs report
.report_job_success:
script:
- echo ${MACHINE_NAME}
- echo ${AUTOTEST}
- echo ${AUTOTEST_COMMIT}
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
- cd ${AUTOTEST_ROOT}
- |
(
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
# Report SUCCESS while holding the file lock on 'autotest.lock'.
# The next script uses the following environment variables:
# - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
# - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
# It also calls the script '.gitlab/scripts/safe_create_rundir'.
${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_success
err=$?
# sleep for a period to allow NFS to propagate the above changes;
# clearly, there is no guarantee that other NFS clients will see the
# changes even after the timeout
sleep 10
exit $err
) 9> autotest.lock
.report_job_failure:
script:
- echo ${MACHINE_NAME}
- echo ${AUTOTEST}
- echo ${AUTOTEST_COMMIT}
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
- cd ${AUTOTEST_ROOT}
- |
(
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
# Report FAILURE while holding the file lock on 'autotest.lock'.
# The next script uses the following environment variables:
# - MACHINE_NAME, AUTOTEST_ROOT, AUTOTEST_COMMIT
# - CI_COMMIT_REF_SLUG, CI_PROJECT_DIR, CI_PIPELINE_URL
# It also calls the script '.gitlab/scripts/safe_create_rundir'.
${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test_failure
err=$?
# sleep for a period to allow NFS to propagate the above changes;
# clearly, there is no guarantee that other NFS clients will see the
# changes even after the timeout
sleep 10
exit $err
) 9> autotest.lock
+55
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@@ -0,0 +1,55 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# GitLab pipelines configurations for the Ruby machine at LLNL
variables:
MACHINE_NAME: ruby
.on_ruby:
tags:
- shell
- ruby
rules:
# Don't run ruby jobs if...
- if: '$CI_COMMIT_BRANCH =~ /_qnone/ || $ON_RUBY == "OFF"'
when: never
# Don't run autotest update if...
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
when: never
# Report success on success status
- if: '$CI_JOB_NAME =~ /report_job_success/ && $AUTOTEST == "YES"'
when: on_success
# Report failure on failure status
- if: '$CI_JOB_NAME =~ /report_job_failure/ && $AUTOTEST == "YES"'
when: on_failure
# Always release resource
- if: '$CI_JOB_NAME =~ /release_resource/'
when: always
# Always cleanup
- if: '$CI_JOB_NAME =~ /cleanup/'
when: always
# Default is to run if previous stage succeeded
- when: on_success
# Spack helped builds
# Generic ruby build job, extending build script
.build_and_test_on_ruby:
extends: [.on_ruby]
stage: build_and_test
script:
# THREADS is used by 'tests/gitlab/build_and_test', run below
- export THREADS=16
- echo ${ALLOC_NAME}
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
- echo ${JOBID}
- echo ${MFEM_DATA_DIR}
- echo ${SPEC}
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) --reservation=ci -t 45 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
+1 -1
View File
@@ -18,7 +18,7 @@
setup_baseline:
tags:
- shell
- dane
- ruby
stage: setup
variables:
GIT_STRATEGY: none
+90
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@@ -0,0 +1,90 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
# script then symlinks the repo to the parent directory of the MFEM source
# directory. Unit tests that depend on the mfem/data repo will then detect that
# this directory is present and be enabled.
setup:
tags:
- shell
- ruby
stage: setup
variables:
GIT_STRATEGY: none
script:
#
# Setup MFEM_DATA_DIR=${SHARED_REPOS_DIR}/mfem-data, see '.gitlab-ci.yml'
# and '.gitlab/configs/<machine>-config.yml'
#
- echo "MACHINE_NAME = ${MACHINE_NAME}"
- echo "AUTOTEST = ${AUTOTEST}"
- echo "AUTOTEST_COMMIT = ${AUTOTEST_COMMIT}"
- echo "SHARED_REPOS_DIR ${SHARED_REPOS_DIR}"
- mkdir -p ${SHARED_REPOS_DIR} && cd ${SHARED_REPOS_DIR}
- command -v flock || echo "Required command 'flock' not found"
- |
(
date
echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
# try every 5 seconds; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
done
echo "Acquired lock on '$PWD/mfem-data.lock'"
date
# clone/update the mfem/data repo while holding the file lock on
# 'mfem-data.lock'
err=0
if [[ ! -d "mfem-data" ]]; then
git clone ${MFEM_DATA_REPO} "mfem-data"
else
cd "mfem-data" && git pull && cd ..
fi || err=1
# sleep for a period to allow NFS to propagate the above changes;
# clearly, there is no guarantee that other NFS clients will see the
# changes even after the timeout
sleep 10
exit $err
) 9> mfem-data.lock
#
# Setup ${AUTOTEST_ROOT}/autotest:
#
- echo "AUTOTEST_ROOT ${AUTOTEST_ROOT}"
- mkdir -p ${AUTOTEST_ROOT} && cd ${AUTOTEST_ROOT}
- |
(
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do
sleep 5
done
echo "Acquired lock on '$PWD/autotest.lock'"
date
# clone/update the autotest repo while holding the file lock on
# 'autotest.lock'
err=0
if [[ ! -d "autotest" ]]; then
git clone ${AUTOTEST_REPO}
else
cd autotest && git pull && cd ..
fi || err=1
# sleep for a period to allow NFS to propagate the above changes;
# clearly, there is no guarantee that other NFS clients will see the
# changes even after the timeout
sleep 10
exit $err
) 9> autotest.lock
+67
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@@ -0,0 +1,67 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
stages:
- setup
- allocate_resource
- build_and_test
- release_resource_and_report
# Slurm shared allocation
allocate_resource:
variables:
GIT_STRATEGY: none
extends: .on_corona
stage: allocate_resource
script:
- echo ${ALLOC_NAME}
- salloc --exclusive --nodes=1 --partition=mi60 --time=45 --no-shell --job-name=${ALLOC_NAME}
timeout: 6h
needs: [setup]
# Build and test jobs, simply provide a spec
rocm_gcc_8.3.1:
variables:
SPEC: "@develop%gcc@8.3.1+rocm amdgpu_target=gfx906"
extends: .build_and_test_on_corona
needs: [allocate_resource]
# Release slurm allocation
release_resource:
variables:
GIT_STRATEGY: none
extends: .on_corona
stage: release_resource_and_report
script:
- echo ${ALLOC_NAME}
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
- echo ${JOBID}
- ([[ -n "${JOBID}" ]] && scancel ${JOBID})
needs: [rocm_gcc_8.3.1]
# Jobs report
report_job_success:
stage: release_resource_and_report
extends:
- .on_corona
- .report_job_success
report_job_failure:
stage: release_resource_and_report
extends:
- .on_corona
- .report_job_failure
include:
- local: .gitlab/configs/common.yml
- local: .gitlab/configs/corona-config.yml
- local: .gitlab/configs/setup-build-and-test.yml
- local: .gitlab/configs/report-build-and-test.yml
-132
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@@ -1,132 +0,0 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
include:
- project: 'lc-templates/id_tokens'
file: 'id_tokens.yml'
# We define the following GitLab pipeline variables:
variables:
# Set the build-and-test command.
# Nested variables are allowed and useful to customize the job command. We
# protect variables with quotes so that their value may remain a string even if
# they contain whitespaces.
JOB_CMD:
value: tests/gitlab/build_and_test --spec \"${SPEC}\" --data-dir ${MFEM_DATA_DIR} --data
# The path to the shared resource between all jobs in the 'dane-baseline'
# pipeline. For example, external repositories like 'tests' and 'tpls' are
# cloned here. Also, 'tpls' is built once for all targets, so that build happens
# here. The BUILD_ROOT is unique to the pipeline, preventing any form of
# concurrency with other pipelines. This directory is removed by the 'cleanup'
# stage in the 'dane-baseline' pipeline.
BUILD_ROOT: ${USER_CI_TOP_DIR}/${CI_PROJECT_NAME}-${CI_MACHINE}-pipeline-${CI_PIPELINE_ID}
# On LLNL's dane and tioga, the 'build-and-test' pipelines creates only one
# allocation shared among jobs in the pipeline in order to save time and
# resources. This allocation has to be uniquely named so that we are sure to
# retrieve it and avoid collisions.
ALLOC_NAME: ${CI_PROJECT_NAME}_ci_${CI_PIPELINE_ID}
# Git repositories used in the pipelines:
# - TPLS_REPO and TESTS_REPO are used only by the 'dane-baseline' pipeline
# - AUTOTEST_REPO is used by all pipelines
# - MFEM_DATA_REPO is used only by the 'build-and-test' pipelines
TPLS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tpls.git
TESTS_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/tests.git
AUTOTEST_REPO: ssh://git@mybitbucket.llnl.gov:7999/mfem/autotest.git
MFEM_DATA_REPO: https://github.com/mfem/data.git
# Directory used to place artifacts:
# - ARTIFACTS_DIR is only used by the 'dane-baseline' pipeline
ARTIFACTS_DIR: artifacts
SLURM_OVERLAP: 1
# Dane
# Arguments for top level allocation
DANE_SHARED_ALLOC: "--exclusive --reservation=ci --time=60 --nodes=1"
# Arguments for job level allocation
# Note: We repeat the reservation, necessary when jobs are manually re-triggered.
DANE_JOB_ALLOC: "--reservation=ci --overlap --nodes=1"
# Tioga
# Arguments for top level allocation
TIOGA_SHARED_ALLOC: "--queue=pci --exclusive --time-limit=45m --nodes=1"
# Arguments for job level allocation
TIOGA_JOB_ALLOC: "--nodes=1 --begin-time=+5s"
# Matrix
# Arguments for top level allocation
MATRIX_SHARED_ALLOC: "-p pdebug --exclusive --time=45 --nodes=1 -G 4"
# Arguments for job level allocation
# Note: We repeat the reservation, necessary when jobs are manually re-triggered.
MATRIX_JOB_ALLOC: "--overlap --nodes=1"
# Configuration shared by build and test jobs specific to this project.
# Not all configuration can be shared. Here projects can fine tune the
# CI behavior.
# See Umpire for an example (export junit test reports).
.custom_job:
artifacts:
reports:
# Note: this part is not used by the 'dane-baseline' pipeline.
# FIXME: BUILD_ROOT, TPLS_REPO, TESTS_REPO are not needed here.
# Also, the definition of SHARED_REPOS_DIR is wrong.
.reproducer_vars:
script:
- |
echo -e "
# Variables \n
export SPEC=\"${SPEC//\"/\\\"}\" \n
# Directories \n
export BUILD_ROOT=\"\${working_dir}\" \n
export SHARED_REPOS_DIR=\"\${BUILD_ROOT}/..\" \n
export MFEM_DATA_DIR=\"\${SHARED_REPOS_DIR}/mfem-data\" \n
# Repositories \n
export TPLS_REPO=\"${TPLS_REPO//\"/\\\"}\" \n
export TESTS_REPO=\"${TESTS_REPO//\"/\\\"}\" \n
export AUTOTEST_REPO=\"${AUTOTEST_REPO//\"/\\\"}\" \n
export MFEM_DATA_REPO=\"${MFEM_DATA_REPO//\"/\\\"}\" \n
# Setup directories \n
./tests/gitlab/build_and_test_setup \n
# Using the CI build cache is optional and requires a token. Set it like so: \n
# export REGISTRY_TOKEN=\"<your token here>\" \n"
#
# Jobs report
.report_job_success:
script:
- ${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test SUCCESS
rules:
- when: on_success
.report_job_failure:
script:
- ${CI_PROJECT_DIR}/.gitlab/scripts/report_build_and_test FAILURE
rules:
- when: on_failure
# Keep the following for debugging purposes: renaming this job from
# '.show_variables' to 'show_variables' will insert this debug job at the
# beginning of all child pipelines.
.show_variables:
tags: [shell, oslic]
variables:
GIT_STRATEGY: none
stage: .pre
script:
- |
echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
echo "AUTOTEST=${AUTOTEST}"
echo "AUTOTEST_COMMIT=${AUTOTEST_COMMIT}"
echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
# Fail the job on purpose to prevent the rest of the pipeline from running
false
-19
View File
@@ -1,19 +0,0 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Jobs report
report_job_success:
extends: [.on_dane, .report_job_success]
stage: jobs-stage-3
report_job_failure:
extends: [.on_dane, .report_job_failure]
stage: jobs-stage-3
-92
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@@ -1,92 +0,0 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Override reproducer section to define MFEM specific variables.
.dane_reproducer_vars:
script:
- !reference [.reproducer_vars, script]
# TODO: Setup script should be defined as a bash script (but then GIT_STRATEGY
# cannot be "none" anymore).
# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
# script then symlinks the repo to the parent directory of the MFEM source
# directory. Unit tests that depend on the mfem/data repo will then detect that
# this directory is present and be enabled.
setup:
extends: .on_dane
stage: jobs-stage-1
script:
- ./tests/gitlab/build_and_test_setup
########################
# Overridden shared jobs
########################
# When using shared jobs, we can duplicate them here to override description and
# add necessary changes.
# We keep ${PROJECT_<MACHINE>_VARIANTS} and ${PROJECT_<MACHINE>_DEPS} So that
# the comparison with the original job is easier.
############
# Extra jobs
############
# We do not recommend using ${PROJECT_<MACHINE>_VARIANTS} and
# ${PROJECT_<MACHINE>_DEPS} in the extra jobs. There is not reason not to fully
# describe the spec here.
.mfem_job_on_dane:
extends: .job_on_dane
stage: jobs-stage-2
variables:
# Dane has 224 threads/node and we run 7 separate jobs: 224=7*32
THREADS: 28
debug_ser_gcc_10:
extends: .mfem_job_on_dane
variables:
SPEC: "%gcc@10.3.1 +debug~mpi"
debug_par_gcc_10:
extends: .mfem_job_on_dane
variables:
SPEC: "%gcc@10.3.1 +debug+mpi"
opt_ser_gcc_10:
extends: .mfem_job_on_dane
variables:
SPEC: "%gcc@10.3.1 ~mpi"
opt_par_gcc_10:
extends: .mfem_job_on_dane
variables:
SPEC: "%gcc@10.3.1"
opt_par_gcc_10_sundials:
extends: .mfem_job_on_dane
variables:
SPEC: "%gcc@10.3.1 +sundials"
opt_par_gcc_10_petsc:
extends: .mfem_job_on_dane
variables:
SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
opt_par_gcc_10_pumi:
extends: .mfem_job_on_dane
variables:
SPEC: "%gcc@10.3.1 +pumi"
opt_par_gcc_10_gslib:
extends: .mfem_job_on_dane
variables:
SPEC: "%gcc@10.3.1 +gslib"
-19
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@@ -1,19 +0,0 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Jobs report
report_job_success:
extends: [.on_matrix, .report_job_success]
stage: jobs-stage-3
report_job_failure:
extends: [.on_matrix, .report_job_failure]
stage: jobs-stage-3
-70
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@@ -1,70 +0,0 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Override reproducer section to define UMPIRE specific variables.
.matrix_reproducer_vars:
script:
- !reference [.reproducer_vars, script]
#TODO: Setup script should be defined as a bash script (but then GIT_STRATEGY cannot be "none" anymore).
# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
# script then symlinks the repo to the parent directory of the MFEM source
# directory. Unit tests that depend on the mfem/data repo will then detect that
# this directory is present and be enabled.
setup:
extends: .on_matrix
stage: jobs-stage-1
script:
- ./tests/gitlab/build_and_test_setup
########################
# Overridden shared jobs
########################
# When using shared jobs , we can duplicate them here to override description and add necessary changes.
# We keep ${PROJECT_<MACHINE>_VARIANTS} and ${PROJECT_<MACHINE>_DEPS} So that
# the comparison with the original job is easier.
############
# Extra jobs
############
# We do not recommend using ${PROJECT_<MACHINE>_VARIANTS} and
# ${PROJECT_<MACHINE>_DEPS} in the extra jobs. There is not reason not to fully
# describe the spec here.
.mfem_job_on_matrix:
extends: .job_on_matrix
stage: jobs-stage-2
variables:
# We run 2 jobs on 1 node that has 112 threads
THREADS: 48
# These modules need to be consistent with the uberenv configurations:
MODULE_LIST: "gcc/10.3.1-magic cuda/12.9.1"
allocate_resources:
timeout: 4h
opt_mpi_cuda_gcc:
extends: .mfem_job_on_matrix
variables:
SPEC: "%gcc@10.3.1 +mpi +cuda cuda_arch=90"
opt_mpi_cuda_hypre_cuda_gcc:
extends: .mfem_job_on_matrix
variables:
SPEC: "%gcc@10.3.1 +mpi +cuda cuda_arch=90 ^hypre+cuda"
opt_mpi_cuda_gcc_gslib:
extends: .mfem_job_on_matrix
variables:
SPEC: "%gcc@10.3.1 +mpi +cuda +gslib cuda_arch=90 ^hypre+cuda"
-20
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@@ -1,20 +0,0 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Jobs report
report_job_success:
extends: [.on_tioga, .report_job_success]
stage: jobs-stage-3
report_job_failure:
extends: [.on_tioga, .report_job_failure]
stage: jobs-stage-3
-70
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@@ -1,70 +0,0 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Override reproducer section to define UMPIRE specific variables.
.tioga_reproducer_vars:
script:
- !reference [.reproducer_vars, script]
#TODO: Setup script should be defined as a bash script (but then GIT_STRATEGY cannot be "none" anymore).
# Setup clones the mfem/data repo in ${SHARED_REPOS_DIR}. The build_and_test
# script then symlinks the repo to the parent directory of the MFEM source
# directory. Unit tests that depend on the mfem/data repo will then detect that
# this directory is present and be enabled.
setup:
extends: .on_tioga
stage: jobs-stage-1
script:
- ./tests/gitlab/build_and_test_setup
########################
# Overridden shared jobs
########################
# When using shared jobs , we can duplicate them here to override description and add necessary changes.
# We keep ${PROJECT_<MACHINE>_VARIANTS} and ${PROJECT_<MACHINE>_DEPS} So that
# the comparison with the original job is easier.
############
# Extra jobs
############
# We do not recommend using ${PROJECT_<MACHINE>_VARIANTS} and
# ${PROJECT_<MACHINE>_DEPS} in the extra jobs. There is not reason not to fully
# describe the spec here.
# Build and test jobs, simply provide a spec
#.tioga_job_command:
# script:
# - echo PROXY="${PROXY}"
# - echo TIOGA_JOB_ALLOC="${TIOGA_JOB_ALLOC}"
# - "printf '#!/bin/bash\n%s\n' \"${JOB_CMD}\" > flux_script.sh"
# - cat flux_script.sh
# - ${PROXY} flux watch $( ${PROXY} flux batch -o output.stdout.type=kvs ${TIOGA_JOB_ALLOC} flux_script.sh )
# - rm -f flux_script.sh
.mfem_job_on_tioga:
extends: .job_on_tioga
stage: jobs-stage-2
variables:
# We run 1 job on 1 node that has 64 threads
THREADS: 64
opt_mpi_rocm_hypre_rocm:
extends: .mfem_job_on_tioga
variables:
SPEC: "%rocmcc@=6.3.1 +rocm amdgpu_target=gfx90a ^hypre+rocm"
# cce_16_0_1:
# extends: .mfem_job_on_tioga
# variables:
# SPEC: "%cce@=16.0.1"
+44
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@@ -0,0 +1,44 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
stages:
- setup
- build_and_test
- report
opt_mpi_cuda_gcc:
variables:
SPEC: "%gcc@8.3.1 +mpi +cuda cuda_arch=70"
extends: .build_and_test_on_lassen
opt_mpi_cuda_hypre_cuda_gcc:
variables:
SPEC: "%gcc@8.3.1 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
extends: .build_and_test_on_lassen
# Jobs report
report_job_success:
stage: report
extends:
- .on_lassen
- .report_job_success
report_job_failure:
stage: report
extends:
- .on_lassen
- .report_job_failure
include:
- local: .gitlab/configs/common.yml
- local: .gitlab/configs/lassen-config.yml
- local: .gitlab/configs/setup-build-and-test.yml
- local: .gitlab/configs/report-build-and-test.yml
@@ -11,7 +11,6 @@
variables:
BASELINE_TEST: baseline
MACHINE_NAME: dane
stages:
- setup
@@ -20,27 +19,8 @@ stages:
- cleanup
- baseline_publish
.on_dane:
tags:
- shell
- dane
rules:
# Don't run dane jobs if...
- if: '$ON_DANE == "OFF"'
when: never
# Don't run autotest update if...
# Note: in some cases, the content of AUTOTEST can be '${AUTOTEST}', so we
# need to treat that value as the default value of 'OFF'.
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "ON" && $AUTOTEST != "YES"'
when: never
# Always cleanup
- if: '$CI_JOB_NAME =~ /cleanup/'
when: always
# Default is to run if previous stage succeeded
- when: on_success
baselinecheck_mfem_intel_dane:
extends: [.on_dane]
baselinecheck_mfem_intel_ruby:
extends: [.on_ruby]
stage: baseline_check
variables:
# TPLS_DIR is used in .gitlab/scripts/baseline to provide the tpls location
@@ -49,13 +29,10 @@ baselinecheck_mfem_intel_dane:
# .gitlab/configs/setup-baseline.yml.
TPLS_DIR: ${BUILD_ROOT}/tpls
script:
- echo "AUTOTEST=$AUTOTEST"
- echo "AUTOTEST_COMMIT=$AUTOTEST_COMMIT"
- echo "AUTOTEST_ROOT=$AUTOTEST_ROOT"
- echo ${BUILD_ROOT}
- echo ${TPLS_DIR}
# Used by the tests in MFEM/tests, dane has 224 threads/node:
- export MFEM_TEST_NP=192
# Used by the tests in MFEM/tests:
- export MFEM_TEST_NP=48
# The next script uses the following environment variables:
# * BASELINE_TEST, SYS_TYPE, CI_PROJECT_DIR, ARTIFACTS_DIR,
# * BUILD_ROOT, TPLS_DIR, MACHINE_NAME
@@ -67,7 +44,7 @@ baselinecheck_mfem_intel_dane:
allow_failure: true
cleanup:
extends: .on_dane
extends: .on_ruby
stage: cleanup
variables:
GIT_STRATEGY: none
@@ -76,7 +53,7 @@ cleanup:
- rm -rf "${BUILD_ROOT}" || true
report_baseline:
extends: [.on_dane]
extends: [.on_ruby]
stage: baseline_report
script:
- echo ${MACHINE_NAME}
@@ -112,13 +89,7 @@ report_baseline:
cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
fi
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
# Note: in some cases, the content of AUTOTEST_COMMIT can be
# '${AUTOTEST_COMMIT}', so we need to treat that value as the default
# value of 'ON'.
if [[ "$AUTOTEST_COMMIT" == '${AUTOTEST_COMMIT}' ]]; then
AUTOTEST_COMMIT="ON"
fi
if [[ "$AUTOTEST_COMMIT" == "ON" || "$AUTOTEST_COMMIT" == "YES" ]]; then
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
@@ -142,12 +113,12 @@ report_baseline:
exit $err
) 9> autotest.lock
baselinepublish_mfem_dane:
extends: [.on_dane]
baselinepublish_mfem_ruby:
extends: [.on_ruby]
stage: baseline_publish
rules:
# - if: '$CI_COMMIT_BRANCH == "master" || $REBASELINE == "ON"'
- if: '$REBASELINE == "ON"'
# - if: '$CI_COMMIT_BRANCH == "master" || $REBASELINE == "YES"'
- if: '$REBASELINE == "YES"'
when: manual
script:
- echo ${BUILD_ROOT}
@@ -157,5 +128,6 @@ baselinepublish_mfem_dane:
- .gitlab/scripts/rebaseline
include:
- local: .gitlab/custom-jobs-and-variables.yml
- local: .gitlab/configs/common.yml
- local: .gitlab/configs/ruby-config.yml
- local: .gitlab/configs/setup-baseline.yml
+94
View File
@@ -0,0 +1,94 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
stages:
- setup
- allocate_resource
- build_and_test
- release_resource_and_report
# Allocate
allocate_resource:
variables:
GIT_STRATEGY: none
extends: .on_ruby
stage: allocate_resource
script:
- echo ${ALLOC_NAME}
- salloc --exclusive --nodes=1 --reservation=ci --time=60 --no-shell --job-name=${ALLOC_NAME}
timeout: 6h
# GitLab jobs for the Ruby machine at LLNL
debug_ser_gcc_10:
variables:
SPEC: "%gcc@10.3.1 +debug~mpi"
extends: .build_and_test_on_ruby
debug_par_gcc_10:
variables:
SPEC: "%gcc@10.3.1 +debug+mpi"
extends: .build_and_test_on_ruby
opt_ser_gcc_10:
variables:
SPEC: "%gcc@10.3.1 ~mpi"
extends: .build_and_test_on_ruby
opt_par_gcc_10:
variables:
SPEC: "%gcc@10.3.1"
extends: .build_and_test_on_ruby
opt_par_gcc_10_sundials:
variables:
SPEC: "%gcc@10.3.1 +sundials"
extends: .build_and_test_on_ruby
opt_par_gcc_10_petsc:
variables:
SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
extends: .build_and_test_on_ruby
opt_par_gcc_10_pumi:
variables:
SPEC: "%gcc@10.3.1 +pumi"
extends: .build_and_test_on_ruby
# Release
release_resource:
variables:
GIT_STRATEGY: none
extends: .on_ruby
stage: release_resource_and_report
script:
- echo ${ALLOC_NAME}
- export JOBID=$(squeue -h --name=${ALLOC_NAME} --format=%A)
- echo ${JOBID}
- ([[ -n "${JOBID}" ]] && scancel ${JOBID})
# Jobs report
report_job_success:
stage: release_resource_and_report
extends:
- .on_ruby
- .report_job_success
report_job_failure:
stage: release_resource_and_report
extends:
- .on_ruby
- .report_job_failure
include:
- local: .gitlab/configs/common.yml
- local: .gitlab/configs/ruby-config.yml
- local: .gitlab/configs/setup-build-and-test.yml
- local: .gitlab/configs/report-build-and-test.yml
+6 -4
View File
@@ -14,7 +14,7 @@
# locals
glob_err=${BASELINE_TEST}.err
base=${BASELINE_TEST}-${SYS_TYPE}
if [[ "${MACHINE_NAME}" == "dane" ]]; then
if [[ "${MACHINE_NAME}" == "ruby" ]]; then
base="${BASELINE_TEST}-${MACHINE_NAME}"
fi
base_diff=${base}.diff
@@ -31,10 +31,12 @@ cd tests
mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
# run
if [[ "${MACHINE_NAME}" == "dane" ]]; then
srun --nodes=1 -t 60 --exclusive --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
if [[ "${MACHINE_NAME}" == "ruby" ]]; then
salloc --nodes=1 --exclusive --reservation=ci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
elif [[ ${MACHINE_NAME} == "corona" ]]; then
srun --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
salloc --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
elif [[ ${MACHINE_NAME} == "lassen" ]]; then
lalloc 1 -q pci ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
else
echo "Unknown machine: MACHINE_NAME=$MACHINE_NAME"
exit 1
+2 -2
View File
@@ -11,7 +11,7 @@
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# There will be collision between corona and dane baselines.
# There will be collision between corona and ruby baselines.
# Once the corresponding files have been generated, we can switch to machine
# specific ref.
ARTIFACT_PATH=${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/baseline-${SYS_TYPE}
@@ -21,7 +21,7 @@ PATCH_FILE=${ARTIFACT_PATH}.patch
FULL_FILE=${ARTIFACT_PATH}.out
DIFF_FILE=${ARTIFACT_PATH}.diff
# There will be collision between corona and dane baselines.
# There will be collision between corona and ruby baselines.
# Once the corresponding files have been generated, we can switch to machine
# specific ref.
SAVED_NAME=baseline-${SYS_TYPE}.saved
-118
View File
@@ -1,118 +0,0 @@
#!/bin/bash
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
function info_msg ()
{
echo "[Information:] ${1}"
}
function error_msg ()
{
echo "[Error:] ${1}"
}
# Perform a report while holding a lock file to prevent concurrency on
# the destination.
# Usage:
# locked_clone <report_function> <lock_name>
function locked_report ()
{
if ! command -v flock
then
error_msg "Required command 'flock' not found"
exit 1
fi
info_msg "Will report ${1} while holding a lock in ${2}"
( date; info_msg "Waiting to acquire lock on '${PWD}/${2}.lock' ..."
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
# try every 5 seconds; we may want to add a counter for the number of
# retries to interrupt a potential infinite loop
while ! flock -n 9; do sleep 5; done
date; info_msg "Acquired lock on '${PWD}/${2}.lock'"
report ${1}
err=$?
# sleep for a period to allow NFS to propagate the above changes;
# clearly, there is no guarantee that other NFS clients will see the
# changes even after the timeout
sleep 10
exit $err
) 9> ${2}.lock
}
function report ()
{
if [[ "${1}" == "SUCCESS" ]]
then
info_msg "All the ${MACHINE_NAME} jobs passed"
status_msg="The 'build-and-test' jobs on ${MACHINE_NAME} were SUCCESSFUL."
elif [[ "${1}" == "FAILURE" ]]
then
info_msg "At least one failure on ${MACHINE_NAME}"
status_msg="Some 'build-and-test' jobs on ${MACHINE_NAME} FAILED."
else
error_msg "Unknown status: ${1} ... aborting"
exit 1
fi
cd ${AUTOTEST_ROOT}/autotest || \
{ error_msg "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
mkdir -p ${MACHINE_NAME}
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
printf "%s\n" "${status_msg}" \
"Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.err
msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
if [[ "${1}" == "FAILURE" ]]
then
# Create 'autotest-email.html' to indicate failure:
cp ${rundir}/gitlab.err ${rundir}/autotest-email.html
fi
# Note: in some cases, the content of AUTOTEST_COMMIT can be
# '${AUTOTEST_COMMIT}', so we need to treat that value as the default
# value of 'ON'.
if [[ "$AUTOTEST_COMMIT" == '${AUTOTEST_COMMIT}' ]]; then
AUTOTEST_COMMIT="ON"
fi
if [[ "$AUTOTEST_COMMIT" == "ON" || "$AUTOTEST_COMMIT" == "YES" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
else
for file in ${rundir}/*; do
echo "------------------------------"
echo "Content of '$file'"
echo "******************************"
cat $file
echo "******************************"
done
rm -rf ${rundir} || true
fi
}
export MACHINE_NAME=${CI_MACHINE}
info_msg "MACHINE_NAME is ${MACHINE_NAME}"
info_msg "AUTOTEST_ROOT is ${AUTOTEST_ROOT}"
info_msg "AUTOTEST=$AUTOTEST"
info_msg "AUTOTEST_COMMIT=$AUTOTEST_COMMIT"
cd ${AUTOTEST_ROOT} && locked_report ${1} autotest
+45
View File
@@ -0,0 +1,45 @@
#!/bin/bash
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
echo "Runs if there was at least one failure on ${MACHINE_NAME}"
cd ${AUTOTEST_ROOT}/autotest || \
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
mkdir -p ${MACHINE_NAME}
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
printf "%s\n" "Some 'build-and-test' jobs on ${MACHINE_NAME} FAILED." \
"Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.err
msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
# Create 'autotest-email.html' to indicate failure:
cp ${rundir}/gitlab.err ${rundir}/autotest-email.html
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
else
for file in ${rundir}/*; do
echo "------------------------------"
echo "Content of '$file'"
echo "******************************"
cat $file
echo "******************************"
done
rm -rf ${rundir} || true
fi
+42
View File
@@ -0,0 +1,42 @@
#!/bin/bash
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
echo "Can only run if all the ${MACHINE_NAME} jobs passed"
cd ${AUTOTEST_ROOT}/autotest || \
{ echo "Invalid 'autotest' dir: ${AUTOTEST_ROOT}/autotest"; exit 1; }
mkdir -p ${MACHINE_NAME}
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-ci-${CI_COMMIT_REF_SLUG}"
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir $rundir)
printf "%s\n" "The 'build-and-test' jobs on ${MACHINE_NAME} were SUCCESSFUL." \
"Pipeline URL:" "$CI_PIPELINE_URL" > ${rundir}/gitlab.out
msg="GitLab CI log for build-and-test on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
else
for file in ${rundir}/*; do
echo "------------------------------"
echo "Content of '$file'"
echo "******************************"
cat $file
echo "******************************"
done
rm -rf ${rundir} || true
fi
-130
View File
@@ -1,130 +0,0 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# The template job to test whether a machine is up.
# Expects CI_MACHINE defined to machine name.
.machine-check:
stage: prerequisites
tags: [shell, oslic]
variables:
GIT_STRATEGY: none
script:
- |
if [[ $(jq '.[env.CI_MACHINE].total_nodes_up' /usr/global/tools/lorenz/data/loginnodeStatus) == 0 ]]
then
echo -e "\e[31mNo node available on ${CI_MACHINE}\e[0m"
false && \
curl --url "https://api.github.com/repos/${GITHUB_PROJECT_ORG}/${GITHUB_PROJECT_NAME}/statuses/${CI_COMMIT_SHA}" \
--header 'Content-Type: application/json' \
--header "authorization: Bearer ${GITHUB_TOKEN}" \
--data "{ \"state\": \"failure\", \"target_url\": \"${CI_PIPELINE_URL}\", \"description\": \"GitLab ${CI_MACHINE} down\", \"context\": \"ci/gitlab/${CI_MACHINE}\" }"
exit 1
fi
###
# Trigger a build-and-test pipeline for a machine.
# Comment the jobs for machines you dont need.
###
# One job to generate the job list for all the subpipelines
generate-job-lists:
stage: prerequisites
tags: [shell, oslic]
variables:
LOCAL_JOBS_PATH: ".gitlab/jobs"
script:
- |
echo "AUTOTEST=$AUTOTEST"
echo "AUTOTEST_COMMIT=$AUTOTEST_COMMIT"
echo "AUTOTEST_ROOT=$AUTOTEST_ROOT"
- |
cat ${LOCAL_JOBS_PATH}/dane.yml > dane-jobs.yml
if [[ ${AUTOTEST} == "ON" || ${AUTOTEST} == "YES" ]]
then
cat ${LOCAL_JOBS_PATH}/dane-reports.yml >> dane-jobs.yml
fi
- |
cat ${LOCAL_JOBS_PATH}/matrix.yml > matrix-jobs.yml
if [[ ${AUTOTEST} == "ON" || ${AUTOTEST} == "YES" ]]
then
cat ${LOCAL_JOBS_PATH}/matrix-reports.yml >> matrix-jobs.yml
fi
- |
cat ${LOCAL_JOBS_PATH}/tioga.yml > tioga-jobs.yml
if [[ ${AUTOTEST} == "ON" || ${AUTOTEST} == "YES" ]]
then
cat ${LOCAL_JOBS_PATH}/tioga-reports.yml >> tioga-jobs.yml
fi
artifacts:
paths:
- dane-jobs.yml
- matrix-jobs.yml
- tioga-jobs.yml
# DANE
dane-up-check:
variables:
CI_MACHINE: "dane"
extends: [.machine-check]
dane-build-and-test:
variables:
CI_MACHINE: "dane"
needs: [dane-up-check, generate-job-lists]
extends: [.build-and-test]
# DANE, MFEM Specific
dane-baseline:
stage: test-pipelines
variables:
# Explicitly pass down values that are not always propagated to child
# pipelines, e.g. when a variable is set in the "Settings -> CI" web
# interface (project variables).
# Note: in some cases, this does not work as expected, e.g. when the
# variable is not re-defined in the web interface; in such cases, the child
# pipeline gets a definition like '${AUTOTEST}', i.e. it behaves as if
# AUTOTEST is undefined, even though there is a default value in
# .gitlab-ci.yml.
AUTOTEST: "${AUTOTEST}"
AUTOTEST_COMMIT: "${AUTOTEST_COMMIT}"
trigger:
include: .gitlab/dane-baseline.yml
strategy: depend
forward:
pipeline_variables: true
needs: [dane-up-check]
# TIOGA
tioga-up-check:
variables:
CI_MACHINE: "tioga"
extends: [.machine-check]
tioga-build-and-test:
variables:
CI_MACHINE: "tioga"
needs: [tioga-up-check, generate-job-lists]
extends: [.build-and-test]
# Matrix
matrix-up-check:
variables:
CI_MACHINE: "matrix"
extends: [.machine-check]
matrix-build-and-test:
variables:
CI_MACHINE: "matrix"
needs: [matrix-up-check, generate-job-lists]
extends: [.build-and-test]
+29 -249
View File
@@ -8,92 +8,9 @@
https://mfem.org
Version 4.9.1 (development)
Version 4.8.1 (development)
===========================
- Added policy for AI-assisted contribution to CONTRIBUTING.md.
Discretization improvements
---------------------------
- Added GPU-enabled partial assembly for simplicial Bernstein H1 basis based on
ragged tensor algorithms (see DOI: 10.1137/11082539X) for mass and diffusion
integrators.
- Replaced legacy simplex quadrature rules with symmetric positive weight rules
for triangles (orders 0-25) and tetrahedra (orders 0-20). These rules
guarantee all-positive weights and interior quadrature points, improving
numerical stability. Higher orders fall back to Grundmann-Moller.
* Triangle rules: Witherden and Vincent, DOI: 10.1016/j.camwa.2015.03.017
* Tet rules (d=1-13): Witherden and Vincent (same as above)
* Tet rules (d=14-20): Chuluunbaatar et al., DOI: 10.1016/j.camwa.2022.08.016
- Added support for general 1D Gauss-Jacobi quadrature rules and Stroud conical
quadrature rules on triangles and tetrahedra.
- Improved the GridFunction projection routines. Projections work for Scalar,
Vector and VectorFE, also NURBS versions. Optionally different types of
projections can be selected, default behavior has not changed.
- Added GridFunction projection methods for trace spaces, i.e., project
coefficients on the mesh skeleton.
- Added methods to estimate function extremum using piecewise linear bounds plus
recursive subdivision.
- Extend FindPointsGSLIB to support surface meshes.
Meshing improvements
--------------------
- Added option to guarantee mesh validity during TMOP-based r-adaptivity, using
bounds on the determinant of the mesh transformation Jacobian.
- Added PA support for TMOP's adaptive limiting functionality. Multiple
GridFunctions and Coefficients can be combined to form a composite term.
- Improved support for 1D NURBS meshes with variable order, including using
the patches construct for 1D NURBS meshes.
- Added the option to include material interfaces (faces separating elements
with different element attributes) as additional boundary elements, for
parallel visualization, e.g. with GLVis. This is supported by both the Print
and PrintAsOne methods of ParMesh. See ParMesh::SetPrintInterfaces().
Linear and nonlinear solvers
----------------------------
- Added support for trace spaces in PRefinementTransferOperator. This is used in
PRefinement multigrid methods for problems posed on trace spaces (see e.g. the
DPG miniapps).
GPU computing
-------------
- Added device assembly support for 3D H(curl) VectorFEDomainLFIntegrator.
- Added NVIDIA cuDSS library interface. Implementation examples have been
added to ex1 and ex1p. See https://developer.nvidia.com/cudss for more
details. Supported versions >= 0.6.0.
- Allow specifying GPU kernel launch bounds for native and RAJA GPU backends.
- Added support for FiniteElement::MapType::INTEGRAL spaces to
QuadratureInterpolator.
New and updated examples and miniapps
-------------------------------------
- The Lorentz miniapp (in miniapps/electromagnetics) has been updated to
leverage the ParticleSet capability.
- Added (Complex)PRefinementMultigrid solver option in the DPG miniapps.
Miscellaneous
-------------
- Fixed signed DOF handling in ParGridFunction reading (read constructor) and
saving via SaveAsOne(). Simplified the process of applying the DOF signs by
using the new method ApplyDofSigns() in class ParFiniteElementSpace: the
method will return immediately if no sign flips are needed.
Version 4.9, released on Dec 11, 2025
=====================================
Starting with this version, MFEM requires a C++17 compiler.
Discretization improvements
@@ -102,199 +19,62 @@ Discretization improvements
nonlinear finite element operators, based on Enzyme or dual numbers AD at
quadrature points. These features are part of the new mfem::future namespace
and some of the API can change in the future. See the new dFEM minimal surface
miniapp in the miniapps/dfem/ directory for illustration of dFEM's use. Using
Enzyme for AD in MFEM is tested with clang v19 and requires clang/LLVM built
with plugin support. See INSTALL for more details.
miniapp in the miniapps/dfem/ directory for illustration of dFEM's use.
- Introduced initial support for particle methods in MFEM with new classes
Particle, ParticleSet and ParticleVector.
* Particle is a convenient interface for individual particle data.
* ParticleSet manages and stores particle data in a struct-of-arrays form,
carrying particle coordinates and IDs along with an arbitrary number of
Vector and integer data for each particle.
* ParticleVector is a Vector-derived container that stores vector data for an
arbitrary number of particles contiguously based on specified vdim/ordering.
See the new particle miniapps in miniapps/gslib/ and miniapps/fluids/navier/.
- Added a new miniapp and specialized AMG solver (AMGF) for optimization-based
contact mechanics. The miniapp solves large-scale frictionless contact using a
self-contained Interior Point (IP) solver, mortar-based contact constraints
provided by Tribol. The resulting linear systems are solved with the new AMGF
solver (see below). Benchmark examples include the two-block, ironing, and
beam-sphere problems. See the miniapps/contact/ directory.
- Added support for boundary integration to the hyperbolic framework. Two new
classes BdrHyperbolicDirichletIntegrator and BoundaryHyperbolicFlowIntegrator
have been introduced for implementation of weak Dirichlet boundary conditions
with a general flux or for the linear case respectively.
- Added a method to compute piecewise linear bounds on high-order functions on
tensor-product elements.
- Added support for interior face integration enabling DG methods in
ParMixedBilinearForm, ParNonlinearForm and ParBlockNonlinearForm.
- Using Enzyme for AD in MFEM is tested with clang v19 and requires clang/LLVM
built with plugin support. See INSTALL for more details.
- In the ParMoonolith integration, added support for variational resampling of
H1 vector fields.
- Introduced IMEX ODE solvers based on a split-operator framework. Added
examples ex41 and ex41p demonstrating IMEX DG/CG discretizations of the
convectiondiffusion equation, with ex41p using DG LOR preconditioning.
Meshing improvements
--------------------
- The TMOP kernel hierarchy has been restructured to reduce compilation time.
Most large kernels have been split into smaller specific kernels for each
metric. The directory structure has been updated with assemble, metrics, mult
and tools subdirectories. New kernel dispatch and specialization system has
also been integrated. Unit tests have been revised to ensure --all tests pass.
- Introduced NC-patch NURBS meshes, which are conforming element-wise but allow
for nonconforming patch topology. This new mesh format supports element
spacing formulas for refinement, as well as local refinement factors for a
subset of knot vectors.
- Added support for higher order meshes in Mesh::MakeSimplicial and
ParMesh::MakeSimplicial.
- Added a new miniapp for interpolating a surface grid of points in 3D using a
smooth NURBS surface, that can then be sampled at arbitrary resolution while
staying close to the original geometry. See miniapps/nurbs/nurbs_surface.
- Parallel anisotropic refinement of hexahedral meshes is now supported,
provided that neighboring hexahedra are not refined in conflicting directions.
A new ParMesh method is added to check for such conflicts, before refinement.
- Added support for higher order meshes in (Par)Mesh::MakeSimplicial.
Linear and nonlinear solvers
----------------------------
- Added FilteredSolver: a base class for solvers with filtering. It handles
cases where a solver performs well except in small subspaces, by adding a
filtering step formulated as a subspace correction.
- Added AMGFSolver: a derived class of FilteredSolver, specialized for AMG with
Filtering (AMGF), providing robust preconditioning for linear systems arising
in constrained optimization problems such as frictionless contact.
Added 'GetResiduals' and 'GetFinalAbsResidualNorm' to 'HyprePCG',
'HypreGMRES', and 'HypreFGMRES' to get 'r' and '|r|_p'. Note that the latter
computes '|r|_p' from 'r' instead of returning a cached value like the
relative 'GetFinalResidualNorm'. These require Hypre >= 2.15.0.
Changed the default solver parameters for 'HyprePCG' to 'tol=1e-6' and
'max_iter=1000'. This matches the default parameters in Hypre 3.0.
Added various helper functions for querying/modifying Hypre solvers:
'HypreSmoother::GetType', 'HypreSmoother::GetSOROptions',
'HypreSmoother::GetPolyOptions', 'HypreSmoother::GetWindowParameters',
'HypreSmoother::IsOperatorSymmetric', 'HyprePCG::GetTol',
'HyprePCG::GetAbsTol', 'HyprePCG::GetMaxIter', 'HyprePCG::SetUseTwoNorm',
'HypreGMRES::GetTol', 'HypreGMRES::GetAbsTol', 'HypreGMRES::GetMaxIter',
'HypreGMRES::GetKDim', 'HypreFGMRES::GetTol', 'HypreFGMRES::GetMaxIter',
'HypreFGMRES::GetKDim', and 'HypreBoomerAMG::GetMaxIter'.
GPU computing
-------------
- Added the 'gpu', 'raja-gpu', and 'ceed-gpu' backend aliases/shortcuts which
automatically select between CUDA or HIP.
- Added the option to enable GPU-aware MPI in MFEM using the environment
variable 'MFEM_GPU_AWARE_MPI' set to any value. Setting this environment
variable is an alternative to calling 'Device::SetGPUAwareMPI(true)'.
- Implemented a GPU-accelerated matrix-free AMR derefinement GridFunction update
operator. This supports mixed geometry meshes and variable order spaces, and
is the default derefinement operator constructed by FiniteElementSpace::Update
and ParFiniteElementSpace::Update. The operator requires the finite element
space to be nonconforming.
- The function Vector::SetSubVector(const Array<int> &, const real_t) now
executes on device if either the vector or the array have the device flag
set. This is most often used for setting constant essential boundary
conditions. A new function Vector::SetSubVectorHost has been added in cases
where host execution is always needed (e.g. when the DOFs array is small).
- Introduced MFEM_FOREACH_THREAD_DIRECT, which directly maps loop tasks to GPU
threads, assigning one task per thread.
- The function Vector::SetSubVector(const Array<int> &, const real_t) now
executes on device if either the vector or the array have the device flag
set. This is most often used for setting constant essential BCs. A new method,
SetSubVectorHost, has been added for cases where host execution is always
needed (e.g. when the DOFs array is small).
- Added GPU support in GradientGridFunction and InnerProduct Coefficient classes
by implementing their Project methods.
- Added new method: GridFunction::GetGradients, with GPU support, for computing
the gradients of a GridFunction on all elements.
- The CUDA-specific names used by some of the unit tests like 'cunit_tests' and
'pcunit_tests' were replaced by names using 'gpu' instead of 'c' (short for
CUDA) or 'cuda'. These tests automatically run the CUDA/HIP tests based on the
MFEM build configuration.
New and updated examples and miniapps
-------------------------------------
- Added the miniapps/fluids directory and moved the previous Navier and the new
incompressible Schrödinger flow miniapps into it.
- Introduced the new Incompressible Schrödinger Flow (ISF) miniapp, which models
inviscid fluid dynamics by solving the linear Schrödinger equation, leveraging
the hydrodynamical analogy to quantum mechanics.
- New particle-related miniapps:
* New transient Navier-Stokes fluid-particles solver NavierParticles in
miniapps/fluids/navier/navier_particles, for modeling tracer particles in
fluid flow, demonstrating use of the new ParticleSet class.
* New Navier miniapp, miniapps/fluids/navier/navier_bifurcation, showing the
use of NavierParticles in a 2D bifurcating channel flow.
* New FindPointsGSLIB miniapp, miniapps/gslib/particles_redist, showing
parallel-redistribution of particle data between MPI ranks.
* Particle visualization features in common/particles_extras for viewing
particle locations and trajectories (ParticleTrajectories) using GLVis.
- Added a new miniapp (meshing/mesh-bounding-boxes) that computes the bounding
boxes for each element of a given mesh, and the bounds on the determinant of
the Jacobian of the transformation.
- Added a new miniapp (tools/gridfunction-bounds) to compute piecewise linear
bounds on a given high-order grid function.
- Added a new miniapp (electromagnetics/lorentz) which computes the trajectory
of a charged particle, subject to Lorentz forces, in electrostatic and/or
magnetostatic fields as computed by the volta or tesla miniapps.
- Added miniapps to demonstrate an implementation of the absolute-value
l1-Jacobi preconditioners in partially assembled operators. This includes
L(1)-Jacobi preconditioners in partially assembled operators. This includes
Multigrid wrapper to demonstrate the effectiveness of these Jacobi-type
operators as smoothers. See the miniapps/diag-smoothers/ directory.
- Updated the mtop miniapp with a GPU enabled forward and adjoint solver for
isotropic linear elasticity.
Miscellaneous
-------------
- Introduced MFEM_FETCH_TPLS CMake option to enable downloading, configuring,
and building of TPLs alongside MFEM (currently supported TPLs are hypre,
METIS, and GSLIB).
- Added quadrature function support to the VisIt and Conduit data collections.
- Added access to the internal parallel matrix in Par(Mixed)BilinearForm and
related utility methods for elimination of BCs.
- FindPointsGSLIB has a new constructor that accepts the mesh object and
internally calls the Setup() method so users do not have to. The FreeData()
method has also been moved to the destructor so users do not need to manually
free-up the memory if the destructor is called before MPI_Finalize().
- Added parallel Address Sanitizer, serial and parallel Undefined Behavior
Sanitizer and serial Memory Sanitizer GitHub actions tests on Ubuntu.
operators as smoothers.
These miniapps can be found in `miniapps/diag-smoothers`.
API changes
-----------
- mfem::internal::tensor and mfem::internal::dual have been moved to
mfem::future::tensor and mfem::future::dual.
- API addition: in class `Operator`, added virtual functions: `AbsMult`, and
`AbsMultTranspose`; in class `Vector`, added `Abs` and `Pow`.
- API addition: in class Operator, added virtual functions: AbsMult, and
AbsMultTranspose; in class Vector, added Abs and Pow.
- ParBilinearForm::EliminateEssentialVDofsInRhs() has been deprecated in favor
of ParallelEliminateEssentialTDofsInRhs().
Miscellaneous
-------------
- Added the "gpu", "raja-gpu", and "ceed-gpu" backend aliases/shortcuts which
automatically select between CUDA or HIP.
- The CUDA-specific names used by some of the unit tests like 'cunit_tests' and
'pcunit_tests' were replaced by names using 'gpu' instead of 'c' (short for
CUDA) or 'cuda'. These tests automatically run the CUDA/HIP tests based on the
MFEM build configuration.
- Added the option to enable GPU-aware MPI in MFEM using the environment
variable 'MFEM_GPU_AWARE_MPI' set to any value. Setting this environment
variable is an alternative to calling 'Device::SetGPUAwareMPI(true)'.
- Added parallel Address Sanitizer, serial and parallel Undefined Behavior
Sanitizer and serial Memory Sanitizer GitHub actions tests on Ubuntu.
Version 4.8, released on Apr 9, 2025
====================================
+42 -108
View File
@@ -59,7 +59,7 @@ project(mfem NONE)
# Current version of MFEM, see also `makefile`.
# mfem_VERSION = (string)
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
set(${PROJECT_NAME}_VERSION 4.9.1)
set(${PROJECT_NAME}_VERSION 4.8.1)
# Prohibit in-source build
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
@@ -133,49 +133,33 @@ if (MFEM_USE_CUDA)
if (NOT CMAKE_CUDA_HOST_COMPILER)
set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
endif()
if (NOT CMAKE_CUDA_ARCHITECTURES)
# make CUDA_ARCH resemble the same form as CMAKE_CUDA_ARCHITECTURES
string(REPLACE "sm_" "" CUDA_ARCH_TMP "${CUDA_ARCH}")
string(REPLACE "," ";" CUDA_ARCH "${CUDA_ARCH_TMP}")
set(CMAKE_CUDA_ARCHITECTURES "${CUDA_ARCH}")
if (CMAKE_VERSION VERSION_LESS 3.18.0)
set(CUDA_FLAGS "-arch=${CUDA_ARCH} ${CUDA_FLAGS}")
elseif (NOT CMAKE_CUDA_ARCHITECTURES)
string(REGEX REPLACE "^sm_" "" ARCH_NUMBER "${CUDA_ARCH}")
if ("${CUDA_ARCH}" STREQUAL "sm_${ARCH_NUMBER}")
set(CMAKE_CUDA_ARCHITECTURES "${ARCH_NUMBER}")
else()
message(FATAL_ERROR "Unknown CUDA_ARCH: ${CUDA_ARCH}")
endif()
else()
set(CUDA_ARCH "CMAKE_CUDA_ARCHITECTURES: ${CMAKE_CUDA_ARCHITECTURES}")
endif()
message(STATUS "Using CUDA architecture: ${CUDA_ARCH}")
enable_language(CUDA)
if (CMAKE_VERSION VERSION_LESS 3.18.0)
# backup try to detect if this is clang or nvcc
if(CMAKE_CUDA_COMPILER MATCHES "nvcc$")
# nvcc
set(MFEM_CUDA_COMPILER_IS_NVCC ON)
set(CUDA_FLAGS "${CUDA_FLAGS} --expt-extended-lambda --expt-relaxed-constexpr")
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
set(CUDA_FLAGS "-arch=${CMAKE_CUDA_ARCHITECTURES} ${CUDA_FLAGS}")
else()
# build -gencode sequence for multiple architectures
foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
set(CUDA_FLAGS
"-gencode arch=compute_${ENTRY},code=sm_${ENTRY} ${CUDA_FLAGS}")
endforeach()
endif()
else()
# build cuda-gpu-arch sequence for multiple architectures
# does not support all/all-major/native
foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
set(CUDA_FLAGS "-cuda-gpu-arch=sm_${ENTRY} ${CUDA_FLAGS}")
endforeach()
endif()
# backup try to detect if this is clang or nvcc
if(CMAKE_CUDA_COMPILER MATCHES "nvcc$")
# nvcc
set(MFEM_CUDA_COMPILER_IS_NVCC ON)
set(CUDA_FLAGS "${CUDA_FLAGS} --expt-extended-lambda --expt-relaxed-constexpr")
endif()
else()
# TODO: all, native, all-major require CMake 3.24+
# backport support for CMake 3.18 to 3.24
if (CMAKE_CUDA_COMPILER_ID STREQUAL "NVIDIA")
# nvcc
set(MFEM_CUDA_COMPILER_IS_NVCC ON)
set(CUDA_FLAGS
"${CUDA_FLAGS} --expt-extended-lambda --expt-relaxed-constexpr")
endif()
if (CMAKE_CUDA_COMPILER_ID STREQUAL "NVIDIA")
# nvcc
set(MFEM_CUDA_COMPILER_IS_NVCC ON)
set(CUDA_FLAGS "${CUDA_FLAGS} --expt-extended-lambda --expt-relaxed-constexpr")
endif()
endif()
set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD} CACHE STRING
"CUDA standard to use.")
@@ -258,16 +242,10 @@ endif()
# AMD HIP
if (MFEM_USE_HIP)
if (NOT CMAKE_HIP_ARCHITECTURES)
if (HIP_ARCH)
set(CMAKE_HIP_ARCHITECTURES CACHE STRING "HIP targets to compile for" "${HIP_ARCH}")
set(GPU_TARGETS "${HIP_ARCH}" CACHE STRING "HIP targets to compile for" FORCE)
endif()
else()
set(HIP_ARCH CACHE STRING "HIP targets to compile for" "${CMAKE_HIP_ARCHITECTURES}")
set(GPU_TARGETS "${CMAKE_HIP_ARCHITECTURES}" CACHE STRING "HIP targets to compile for" FORCE)
if (HIP_ARCH)
message(STATUS "Using HIP architecture: ${HIP_ARCH}")
set(GPU_TARGETS "${HIP_ARCH}" CACHE STRING "HIP targets to compile for")
endif()
message(STATUS "Using HIP architecture: ${CMAKE_HIP_ARCHITECTURES}")
if (ROCM_PATH)
list(INSERT CMAKE_PREFIX_PATH 0 ${ROCM_PATH})
endif()
@@ -300,22 +278,6 @@ if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
endif()
endif()
# Warn user if deprecated FETCH_TPLS is provided
if (DEFINED FETCH_TPLS)
message(STATUS "Setting MFEM_FETCH_TPLS to user-provided value of FETCH_TPLS (i.e., MFEM_FETCH_TPLS=${FETCH_TPLS})")
set (MFEM_FETCH_TPLS FETCH_TPLS)
message(DEPRECATION "The use of FETCH_TPLS is deprecated and will be removed in future verison. Please use MFEM_FETCH_TPLS instead.")
endif()
# Umpire (must be included before hypre, so hypre can use it if needed)
if (MFEM_USE_UMPIRE)
# umpire uses FindCUDA, which needs CMP0146=OLD in CMake >= 3.27
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.27.0)
cmake_policy(SET CMP0146 OLD)
endif()
find_package(UMPIRE REQUIRED)
endif()
# MPI -> hypre; PETSc (optional)
if (MFEM_USE_MPI)
find_package(MPI REQUIRED)
@@ -433,15 +395,6 @@ if (MFEM_USE_STRUMPACK)
endif()
endif()
# cuDSS can only be enabled in CUDA
if (MFEM_USE_CUDSS)
if (MFEM_USE_CUDA)
find_package(CUDSS REQUIRED)
else()
message(FATAL_ERROR " *** cuDSS requires that CUDA be enabled.")
endif()
endif()
# GnuTLS
if (MFEM_USE_GNUTLS)
find_package(_GnuTLS REQUIRED)
@@ -542,13 +495,14 @@ endif()
# RAJA
if (MFEM_USE_RAJA)
# RAJA uses FindCUDA, which needs CMP0146=OLD in CMake >= 3.27
if(CMAKE_VERSION VERSION_GREATER_EQUAL 3.27.0)
cmake_policy(SET CMP0146 OLD)
endif()
find_package(RAJA REQUIRED)
endif()
# UMPIRE
if (MFEM_USE_UMPIRE)
find_package(UMPIRE REQUIRED)
endif()
# GOOGLE-BENCHMARK
if (MFEM_USE_BENCHMARK)
find_package(Benchmark REQUIRED)
@@ -640,29 +594,20 @@ find_package(Threads REQUIRED)
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB HDF5
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
ADIOS2 MKL_CPARDISO MKL_PARDISO AMGX MAGMA CUSPARSE CUBLAS CUDSS CALIPER CODIPACK
ADIOS2 MKL_CPARDISO MKL_PARDISO AMGX MAGMA CUSPARSE CUBLAS CALIPER CODIPACK
BENCHMARK PARELAG TRIBOL MPI_CXX HIP HIPBLAS HIPSPARSE MOONOLITH BLITZ
ALGOIM ENZYME CUDA::cudart)
ALGOIM ENZYME)
# Add all created targets and *_FOUND libraries in the variables TPL_TARGETS and
# TPL_LIBRARIES, respectively.
set(TPL_TARGETS)
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
set(TPL_LIBRARIES "")
set(TPL_INCLUDE_DIRS "")
foreach(TPL IN LISTS MFEM_TPLS)
if (${TPL}_FOUND OR TARGET ${TPL})
if (${TPL}_FOUND)
message(STATUS "MFEM: using package ${TPL}")
if (TARGET ${TPL})
list(APPEND TPL_TARGETS ${TPL})
else()
list(APPEND TPL_LIBRARIES ${${TPL}_LIBRARIES})
list(APPEND TPL_INCLUDE_DIRS ${${TPL}_INCLUDE_DIRS})
endif()
list(APPEND TPL_LIBRARIES ${${TPL}_LIBRARIES})
list(APPEND TPL_INCLUDE_DIRS ${${TPL}_INCLUDE_DIRS})
endif()
endforeach(TPL)
# reverse to remove the first instance of entries in TPL_LIBRARIES
# so later duplicates are kept (for dependency ordering)
list(REVERSE TPL_LIBRARIES)
list(REMOVE_DUPLICATES TPL_LIBRARIES)
list(REVERSE TPL_LIBRARIES)
@@ -734,12 +679,8 @@ set(MFEM_INSTALL_DIR ${CMAKE_INSTALL_PREFIX})
# Declaring the library
mfem_add_library(mfem ${SOURCES} ${HEADERS} ${MASTER_HEADERS})
target_compile_features(mfem PUBLIC cxx_std_${CMAKE_CXX_STANDARD})
# message(STATUS "TPL_LIBRARIES = ${TPL_LIBRARIES}")
target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES} ${TPL_TARGETS})
if (TPL_TARGETS)
add_dependencies(mfem ${TPL_TARGETS})
endif()
target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES})
if (MINGW)
target_link_libraries(mfem PRIVATE ws2_32)
endif()
@@ -881,12 +822,11 @@ add_dependencies(exec
# - https://cmake.org/Bug/view.php?id=8438
# Add a target to copy the mfem data directory to the build directory
# Implementable as a single copy_directory_if_different command w/ CMake >= 3.26
file(GLOB DATA_FILES CONFIGURE_DEPENDS ${PROJECT_SOURCE_DIR}/data/*)
add_custom_target(copy_data
COMMAND ${CMAKE_COMMAND} -E make_directory data
COMMAND ${CMAKE_COMMAND} -E copy_if_different ${DATA_FILES} data
COMMENT "Syncing the data directory ...")
add_custom_command(OUTPUT data_is_copied
COMMAND ${CMAKE_COMMAND} -E copy_directory ${PROJECT_SOURCE_DIR}/data data
COMMAND ${CMAKE_COMMAND} -E touch data_is_copied
COMMENT "Copying the data directory ...")
add_custom_target(copy_data DEPENDS data_is_copied)
# Add 'copy_data' as a prerequisite for all executables, if the source and the
# build directories are not the same.
if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
@@ -1018,15 +958,9 @@ install(FILES
install(EXPORT ${PROJECT_NAME_UC}Targets
DESTINATION ${INSTALL_CMAKE_DIR})
# Install the data directory if present, i.e. if the copy_data target is built
install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/data
DESTINATION ${MFEM_INSTALL_DIR} OPTIONAL)
#-------------------------------------------------------------------------------
# Create 'config.mk' from 'config.mk.in' for the build and install locations and
# define install rules for 'config.mk' and 'test.mk'
#-------------------------------------------------------------------------------
if (MFEM_USE_CUDA OR MFEM_USE_HIP)
option(MFEM_EXPORT_GPU_CONFIG "Export config.mk for GPU-enabled downstream packages" ON)
endif()
mfem_export_mk_files()
+60 -75
View File
@@ -3,13 +3,12 @@
</p>
<p align="center">
<a href="https://github.com/mfem/mfem/blob/master/LICENSE"><img alt="License" src="https://img.shields.io/badge/License-BSD-blue.svg"></a>
<a href="https://github.com/mfem/mfem/releases/latest"><img alt="GitHub release" src="https://img.shields.io/github/v/release/mfem/mfem"></a>
<a href="https://github.com/mfem/mfem/actions/workflows/repo-check.yml?query=branch%3Amaster"><img alt="Repo check" src="https://github.com/mfem/mfem/actions/workflows/repo-check.yml/badge.svg?branch=master"></a>
<a href="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml?query=branch%3Amaster"><img alt="Build Analysis" src="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml/badge.svg?branch=master"></a>
<a href="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml?query=branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
<a href="https://github.com/mfem/mfem/blob/master/LICENSE"><img alt="License" src="https://img.shields.io/badge/License-BSD-brightgreen.svg"></a>
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Arepo-check+branch%3Amaster"><img alt="Repo check" src="https://github.com/mfem/mfem/actions/workflows/repo-check.yml/badge.svg?branch=master"></a>
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuild-analysis+branch%3Amaster"><img alt="Build Analysis" src="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml/badge.svg?branch=master"></a>
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuilds-and-tests+branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
<a href="https://ci.appveyor.com/project/mfem/mfem"><img alt="Build Status" src="https://ci.appveyor.com/api/projects/status/19non9sqm6msi2wy?svg=true"></a>
<a href="https://docs.mfem.org/html/index.html"><img alt="Documentation" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
<a href="https://docs.mfem.org/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
</p>
@@ -25,14 +24,6 @@ must be made under this license.
Note also that MFEM has a [Code of Conduct](CODE_OF_CONDUCT.md). By participating
in the MFEM community, you agree to abide by its rules.
## AI Policy
- Use of AI code generation in MFEM is allowed but must be disclosed, e.g. by
selecting the `AI-assisted` label on the PR.
- By submitting a PR, the author acknowledges that they have reviewed and
understand the changes they are proposing.
- PR authors are still responsible for correctness, licensing, and attribution
of all changes.
If you plan on contributing to MFEM, consider reviewing the
[issue tracker](https://github.com/mfem/mfem/issues) first to check if a thread
already exists for your desired feature or the bug you ran into. Use a pull
@@ -85,7 +76,7 @@ Origin](#developers-certificate-of-origin-11) at the end of this file.*
follow the [MFEM PR Rules](#mfem-pr-rules).
- When your contribution is fully working and ready to be reviewed, add
the `ready-for-review` label.
- PRs are treated similarly to journal submission, with an "editor" assigning two
- PRs are treated similarly to journal submission with an "editor" assigning two
reviewers to evaluate the changes.
- The reviewers have 3 weeks to evaluate the PR and work with the author to
fix issues and implement improvements.
@@ -126,7 +117,7 @@ The MFEM source code has the following structure:
│ ├── petsc
│ ├── pumi
│ ├── sundials
└── superlu
| └── superlu
├── fem
│ ├── ceed
│ ├── dfem
@@ -148,22 +139,19 @@ The MFEM source code has the following structure:
│ ├── adjoint
│ ├── autodiff
│ ├── common
│ ├── contact
│ ├── dfem
│ ├── diag-smoothers
│ ├── dpg
│ ├── electromagnetics
│ ├── fluids
│ ├── gslib
│ ├── hdiv-linear-solver
│ ├── hooke
│ ├── meshing
│ ├── mtop
│ ├── multidomain
│ ├── navier
│ ├── nurbs
│ ├── parelag
│ ├── performance
│ ├── plasma
│ ├── shifted
│ ├── solvers
│ ├── spde
@@ -194,15 +182,15 @@ respectively.
- The main finite element classes are:
+ [`FiniteElement`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
+ [`FiniteElementCollection`](https://docs.mfem.org/html/classmfem_1_1FiniteElementCollection.html)
+ [`FiniteElementCollection`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
+ [`FiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1FiniteElementSpace.html)
+ [`GridFunction`](https://docs.mfem.org/html/classmfem_1_1GridFunction.html)
+ [`BilinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html)
+ [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html), [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://docs.mfem.org/html/classmfem_1_1MixedBilinearForm.html)
+ [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://docs.mfem.org/html/classmfem_1_1MixedBilinearForm.html)
- The main linear algebra classes and sources are
+ [`Operator`](https://docs.mfem.org/html/classmfem_1_1Operator.html) and [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html)
+ [`Vector`](https://docs.mfem.org/html/classmfem_1_1Vector.html) and [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html)
+ [`Vector`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html)
+ [`DenseMatrix`](https://docs.mfem.org/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](https://docs.mfem.org/html/classmfem_1_1SparseMatrix.html)
+ Sparse [smoothers](https://docs.mfem.org/html/sparsesmoothers_8hpp.html) and linear [solvers](https://docs.mfem.org/html/solvers_8hpp.html)
@@ -214,8 +202,8 @@ shared geometric entities between different tasks. The parallel source files
have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
- The main parallel classes are
+ [`ParMesh`](https://docs.mfem.org/html/classmfem_1_1ParMesh.html)
+ [`ParNCMesh`](https://docs.mfem.org/html/classmfem_1_1ParNCMesh.html)
+ [`ParMesh`](https://docs.mfem.org/html/solvers_8hpp.html)
+ [`ParNCMesh`](https://docs.mfem.org/html/classmfem_1_1ParMesh.html)
+ [`ParFiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1ParFiniteElementSpace.html)
+ [`ParGridFunction`](https://docs.mfem.org/html/classmfem_1_1ParGridFunction.html)
+ [`ParBilinearForm`](https://docs.mfem.org/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](https://docs.mfem.org/html/classmfem_1_1ParLinearForm.html)
@@ -225,14 +213,14 @@ have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
#### GPU and general device support
GPU and multi-core CPU support is based on device kernels supporting different
backends (CUDA, HIP, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
backends (CUDA, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
device/host memory manager.
- The main device-relevant classes and sources are:
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
+ the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html), [`hip.hpp`](https://docs.mfem.org/html/hip_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
#### Utilities, building and documentation
- The `general/` directory contains C++ classes that serve as utilities for
@@ -246,8 +234,8 @@ device/host memory manager.
- `examples` and `miniapps` respectively gather simple and more fully-featured
demonstrations of the usage on MFEM. They both rely on `data/` for the
collection of meshes.
- The `tests/` directory contains a unit test suite, additional tests, and
benchmarks.
- The `tests/` directory contains a unit test suite and will later contain more
tests that run example codes.
See also the [code overview](https://mfem.org/code-overview/) section on the MFEM
website.
@@ -281,8 +269,8 @@ Before you can start, you need a GitHub account, here are a few suggestions:
the top of https://github.com/mfem.
- Consider making your membership public by going to https://github.com/orgs/mfem/people
and clicking on the organization visibility drop box next to your name.
- Project discussions and announcements will be posted at https://github.com/orgs/mfem/discussions,
tagging the `@mfem/everyone` team when appropriate.
- Project discussions and announcements will be posted at
https://github.com/orgs/mfem/teams/everyone.
#### Structure
- The MFEM source code is in the [mfem](https://github.com/mfem/mfem)
@@ -342,12 +330,11 @@ Before you can start, you need a GitHub account, here are a few suggestions:
- Well-designed simple code is frequently more general and powerful.
- Lean code base is easier to understand by new collaborators.
- New features should be added only if they are necessary or generally useful.
- Introduction of language constructs not currently used in MFEM should be
- Introduction of language constructions not currently used in MFEM should be
justified and generally avoided (to maintain portability to various systems
and compilers, including early access hardware).
- We prefer basic C++. Use C++17 features judiciously, prioritizing readability,
consistency with existing MFEM code, and portability to different systems,
compilers and device backends.
- We prefer basic C++ and the C++03 standard, to keep the code readable by
a large audience and to make sure it compiles anywhere.
- *Keep the code general and reasonably efficient*
- The main goal is fast prototyping for research and application development.
@@ -390,7 +377,7 @@ Before you can start, you need a GitHub account, here are a few suggestions:
- When your branch is ready for other developers to review / comment on
the code, create a pull request towards `mfem:master`.
- Pull requests typically have titles like:
- Pull request typically have titles like:
`Description [new-feature-dev]`
@@ -411,12 +398,12 @@ Before you can start, you need a GitHub account, here are a few suggestions:
- Add a description, appropriate labels and assign yourself to the PR. The MFEM
team will add reviewers as appropriate.
- List outstanding TODO items in the description.
- List outstanding TODO items in the description, see PR #222 for an example.
- When your contribution is fully working and ready to be reviewed, add
or request the `ready-for-review` label.
the `ready-for-review` label.
- PRs are treated similarly to journal submission, with an "editor" assigning
- PRs are treated similarly to journal submission with an "editor" assigning
two reviewers to evaluate the changes. The reviewers have 3 weeks to evaluate
the PR and work with the author to implement improvements and fix issues.
@@ -442,7 +429,7 @@ Before you can start, you need a GitHub account, here are a few suggestions:
checks in GitHub Actions enforce MFEM-specific rules which are explained in
the error messages and the `tests/scripts` directory.
- Also note that the tests `branch-history` and `repo-check` found in GitHub
- Also note that the tests `branch-history` and `repos-checks` found in GitHub
Actions can be triggered automatically before each push using git hooks. See
the [git hooks README](config/githooks/README.md) for a detailed explanation.
@@ -499,15 +486,15 @@ Everyone on the MFEM team can be asked to serve as a reviewer on a PR in their a
3. To ensure the quality of the PR by making sure that the code adheres to the [Developer Guidelines](#developer-guidelines), e.g. all methods, data members, and functions have documentation, including data ownership and lifetime, new examples/miniapps have a corresponding PR in mfem/web, major features have `CHANGELOG` entries, etc.
4. To seek help from the editors in case of difficulties.
3. To seek help from the editors in case of difficulties.
5. To complete the review in a timely manner: 3 weeks from assignment.
4. To complete the review in a timely manner: 3 weeks from assignment.
6. To test the PR thoroughly before merging in *next*. The PR author is also encouraged to perform testing and inform the reviewers about the results.
5. To test the PR thoroughly before merging in *next*. The PR author is also encouraged to perform testing and inform the reviewers about the results.
7. To monitor the PR impact on the testing in the *next* branch and alert the editors that the PR is ready for merging in *master*.
6. To monitor the PR impact on the testing in the *next* branch and alert the editors that the PR is ready for merging in *master*.
8. The review of bugfixes should be expedited proportional to their importance. The review window can be much less than three weeks in such cases.
7. The review of bugfixes should be expedited proportional to their importance. The review window can be much less than three weeks in such cases.
#### Responsibilities of Authors
@@ -533,30 +520,30 @@ Before a PR can be merged, it should satisfy the following:
- [ ] Code builds.
- [ ] Code passes `make style`.
- [ ] Update `CHANGELOG`:
- [ ] Is this a new feature users need to be aware of? New or updated example or miniapp?
- [ ] Does it make sense to create a new section in the `CHANGELOG` to group with other related features?
- [ ] Is this a new feature users need to be aware of? New or updated example or miniapp?
- [ ] Does it make sense to create a new section in the `CHANGELOG` to group with other related features?
- [ ] Update `INSTALL`:
- [ ] Has a new optional library been added? If so, what range of versions of this library are required? (*Make sure the external library is compatible with our BSD license, e.g. it is not licensed under GPL!*)
- [ ] Have the version ranges for any required or optional libraries changed?
- [ ] Does `make` or `cmake` have a new target?
- [ ] Did the requirements or the installation process change? *(rare)*
- [ ] Had a new optional library been added? If so, what range of versions of this library are required? (*Make sure the external library is compatible with our BSD license, e.g. it is not licensed under GPL!*)
- [ ] Have the version ranges for any required or optional libraries changed?
- [ ] Does `make` or `cmake` have a new target?
- [ ] Did the requirements or the installation process change? *(rare)*
- [ ] Update continuous integration server configurations if necessary (e.g. with new version requirements for each of MFEM's dependencies)
- [ ] `.github`
- [ ] `.appveyor.yml`
- [ ] `.github`
- [ ] `.appveyor.yml`
- [ ] Update `.gitignore`:
- [ ] Check if `make distclean; git status` shows any files that were generated from the source by the project (not an IDE) but we don't want to track in the repository.
- [ ] Add new patterns (just for the new files above) and re-run the above test.
- [ ] Check if `make distclean; git status` shows any files that were generated from the source by the project (not an IDE) but we don't want to track in the repository.
- [ ] Add new patterns (just for the new files above) and re-run the above test.
- [ ] New examples:
- [ ] All sample runs at the top of the example source file work.
- [ ] Update `examples/makefile`:
- [ ] All sample runs at the top of the example source file work.
- [ ] Update `examples/makefile`:
- [ ] Add the example code to the appropriate `SEQ_EXAMPLES` and `PAR_EXAMPLES` variables.
- [ ] Add any files generated by it to the `clean` target.
- [ ] Add the example binary and any files generated by it to the top-level `.gitignore` file.
- [ ] Update `examples/CMakeLists.txt`:
- [ ] Update `examples/CMakeLists.txt`:
- [ ] Add the example code to the `ALL_EXE_SRCS` variable.
- [ ] Make sure `THIS_TEST_OPTIONS` is set correctly for the new example.
- [ ] List the new example in `doc/CodeDocumentation.dox`.
- [ ] If new examples directory (e.g. `examples/pumi`), list it in `doc/CodeDocumentation.conf.in`
- [ ] If new examples directory (e.g.`examples/pumi`), list it in `doc/CodeDocumentation.conf.in`
- [ ] Companion pull request for documentation in [mfem/web](https://github.com/mfem/web) repo:
- [ ] Update or add example-specific documentation, see e.g. the `src/examples.md`.
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
@@ -573,13 +560,13 @@ Before a PR can be merged, it should satisfy the following:
- [ ] Add/update the `CMakeLists.txt` file in the new miniapp directory.
- [ ] Consider adding a new test for the new miniapp.
- [ ] List the new miniapp in `doc/CodeDocumentation.dox`
- [ ] If new miniapps directory (e.g. `miniapps/nurbs`), add it to `MINIAPP_SUBDIRS` in the `makefile`.
- [ ] If new miniapps directory (e.g. `miniapps/nurbs`), list it in `doc/CodeDocumentation.conf.in`
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), add it to `MINIAPP_SUBDIRS` in the `makefile`.
- [ ] If new miniapps directory (e.g.`miniapps/nurbs`), list it in `doc/CodeDocumentation.conf.in`
- [ ] Companion pull request for documentation in [mfem/web](https://github.com/mfem/web) repo:
- [ ] Update or add miniapp-specific documentation, see e.g. the `src/meshing.md` and `src/electromagnetics.md` files.
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
- [ ] The miniapps go at the end of the page, and are usually listed only under a specific "Application (PDE)" category.
- [ ] Add a short description of the miniapp in the "Extensive Examples" section of `features.md`.
- [ ] Update or add miniapp-specific documentation, see e.g. the `src/meshing.md` and `src/electromagnetics.md` files.
- [ ] Add the description, labels and screenshots in `src/examples.md` and `src/img`.
- [ ] The miniapps go at the end of the page, and are usually listed only under a specific "Application (PDE)" category.
- [ ] Add a short description of the miniapp in the "Extensive Examples" section of `features.md`.
- [ ] New capability:
- [ ] All new public, protected, and private classes, methods, data members, and functions have full Doxygen-style documentation in source comments. Documentation should include descriptions of member data, function arguments and return values, template parameters, and prerequisites for calling new functions.
- [ ] Pointer arguments and return values must specify whether ownership is being transferred or lent with the call.
@@ -681,7 +668,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
- [ ] Update URL shortlinks:
- [ ] Create a shortlink at [http://bit.ly/](http://bit.ly/) for the release tarball, e.g. https://mfem.github.io/releases/mfem-3.1.tgz.
- [ ] (LLNL only) Add and commit the new shortlink in the `links` and `links-mfem` files of the internal `mfem/downloads` repo.
- [ ] Add the new shortlinks to the MFEM package in `spack`.
- [ ] Add the new shortlinks to the MFEM packages in `spack`, `homebrew/science`, `VisIt`, etc.
- [ ] Update website in `mfem/web` repo:
- Update version and shortlinks in `src/index.md` and `src/download.md`.
- Use [cloc-1.62.pl](http://cloc.sourceforge.net/) and `ls -lh` to estimate the SLOC and the tarball size in `src/download.md`.
@@ -733,24 +720,22 @@ commit or push, see the [README](config/githooks/README.md) in the `config/githo
directory.
### GitHub Actions smoke tests
### Linux and Mac smoke tests
We use GitHub Actions to drive the default tests on the `master` and `next`
branches. See the `.github/workflows` files and the logs at
[https://github.com/mfem/mfem/actions](https://github.com/mfem/mfem/actions).
GitHub Actions testing should be kept lightweight, as there is a time
constraint on jobs. The current workflows cover Linux, macOS, and Windows
configurations.
Testing using GitHub Actions should be kept lightweight, as there is a time
constraint on jobs. Two virtual machines are configured - Mac (OS X) and Linux.
- Tests on the `master` branch are triggered whenever a PR is issued on this branch.
- Tests on the `next` branch are currently scheduled to run each night.
### Additional Windows smoke test
We also use Appveyor to test building with the MS Visual C++ compiler in a Windows
environment, as well as to test the CMake build. See the `.appveyor.yml` file
and the build logs at
### Windows smoke test
We use Appveyor to test building with the MS Visual C++ compiler in a Windows
environment, as well as to test the CMake build. See the `.appveyor` file and the
build logs at
[https://ci.appveyor.com/project/mfem/mfem](https://ci.appveyor.com/project/mfem/mfem).
CMake is used to generate the MSVC Project files and drive the build. A release
+17 -52
View File
@@ -38,13 +38,14 @@ the option MFEM_USE_METIS.
MFEM also includes support for devices such as GPUs, and programming models such
as CUDA, HIP, OCCA, OpenMP and RAJA.
- Starting with version 4.9, MFEM requires a C++17 compiler.
- Starting with version 4.0, MFEM requires a C++11 compiler. We recommend using
a newer compiler, e.g. GCC version 4.9 or higher.
- CUDA support requires an NVIDIA GPU and an installation of the CUDA Toolkit
https://developer.nvidia.com/cuda-toolkit
- HIP support requires an AMD GPU and an installation of the ROCm software stack
https://rocm.docs.amd.com
https://rocmdocs.amd.com
- OCCA support requires the OCCA library
https://libocca.org
@@ -82,9 +83,9 @@ Serial build:
Parallel build:
(download hypre and METIS 4 from above URLs)
(build METIS 4 in ../metis-4.0 relative to mfem/)
(for METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
(build hypre in ../hypre relative to mfem/)
make parallel -j 4
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
CUDA build:
make cuda -j 4
@@ -114,16 +115,11 @@ Serial build:
Parallel build:
(download hypre and METIS 4 from above URLs)
(build METIS 4 in ../metis-4.0 relative to mfem/)
(for METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
(build hypre in ../hypre relative to mfem/)
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES
make -j 4
Parallel build with fetching of hypre and METIS:
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
cmake <mfem-source-dir> -DMFEM_USE_MPI=YES -DMFEM_FETCH_TPLS=YES
make -j 4
(For METIS 5, see https://mfem.org/building/#parallel-build-using-metis-5)
CUDA build:
(this build requires CMake 3.17 or newer)
@@ -133,8 +129,7 @@ CUDA build:
HIP build:
mkdir <mfem-build-dir> ; cd <mfem-build-dir>
cmake <mfem-source-dir> -DMFEM_USE_HIP=YES -DHIP_ARCH=gfx942 \
-DCMAKE_CXX_COMPILER=amdclang++ -DCMAKE_HIP_COMPILER=amdclang++
cmake <mfem-source-dir> -DMFEM_USE_HIP=YES -DHIP_ARCH=gfx942 -DCMAKE_CXX_COMPILER=amdclang++ -DCMAKE_HIP_COMPILER=amdclang++
make -j 4
Example codes (serial/parallel, depending on the build):
@@ -269,7 +264,6 @@ Compilers:
CXX - C++ compiler, serial build
MPICXX - MPI C++ compiler, parallel build
CUDA_CXX - The CUDA compiler, 'nvcc' or 'clang++'
HIP_CXX - The HIP compiler, e.g. 'hipcc'
Compiler options:
OPTIM_FLAGS - Options for optimized build
@@ -396,11 +390,6 @@ MFEM_USE_STRUMPACK = YES/NO
classes. When enabled, this option uses the STRUMPACK_* library options, see
below.
MFEM_USE_CUDSS = YES/NO
Enable MFEM functionality based on the cuDSS library. When using cuDSS, CUDA
support must be also enabled in MFEM, i.e. MFEM_USE_CUDA=YES must be set.
When enabled, this option uses the CUDSS_* library options, see below.
MFEM_USE_GINKGO = YES/NO
Enable MFEM functionality based on the Ginkgo library, which provides
iterative linear solvers and preconditioners with OpenMP, CUDA backends, see
@@ -560,13 +549,13 @@ MFEM_USE_RAJA = YES/NO
MFEM_USE_OCCA = YES/NO
Enables support for the OCCA library in MFEM. OCCA is an open-source library
which aims to make it easy to program different types of devices (e.g. CPU,
GPU, FPGA) by providing a unified API for interacting with JIT-compiled
GPU, FPGA) by providing an unified API for interacting with JIT-compiled
backends. In order to use the OCCA CUDA backend, CUDA support must be enabled
in MFEM as well, i.e. MFEM_USE_CUDA=YES must be set.
MFEM_USE_GSLIB = YES/NO
Enables MFEM functionality based on the GSLIB library, and specifically its
FindPoints component, which provides robust algorithms to evaluate finite
FindPoints component, which provides a robust algorithms to evaluate finite
element functions in a collection of points in physical space. When enabled,
the user can use the GSLIB-FindPoints methods as shown in miniapps/gslib.
@@ -674,7 +663,6 @@ The specific libraries and their options are:
- OpenMP (optional), usually part of compiler, used when either MFEM_USE_OPENMP
or MFEM_USE_LEGACY_OPENMP is set to YES.
Options: OPENMP_OPT, OPENMP_LIB.
Versions: OpenMP >= 3.1 when MFEM_USE_OPENMP=YES.
- High-resolution POSIX clocks: when using MFEM_TIMER_TYPE = 2, it may be
necessary to link with a system library (e.g. librt.so).
@@ -725,24 +713,13 @@ The specific libraries and their options are:
Options: STRUMPACK_OPT, STRUMPACK_LIB.
Versions: STRUMPACK >= 3.0.0.
- CUDSS (optional), used when MFEM_USE_CUDSS = YES. Note that CUDSS requires
CUDA 12.x toolkit and the cuDSS libraries. The supported communication backend
is OpenMPI 4.x (default), and OpenMPI 4.x or a later version must be pre-built.
The source files in the cuDSS tarball provide guidance for developing custom
MPI implementations.
URL: https://developer.nvidia.com/cudss
https://docs.nvidia.com/cuda/cudss/advanced_features.html#communication-layer-library-in-cudss
Options: CUDSS_OPT, CUDSS_LIB.
Versions: cuDSS >= 0.6.0.
- Ginkgo (optional), used when MFEM_USE_GINKGO = YES. Ginkgo may have additional
requirements and module-specific dependencies; see the webpage below.
- Ginkgo (optional), used when MFEM_USE_GINKGO = YES. Note that Ginkgo needs a
C++ compiler that supports the C++-17 standard. For additional requirements
and dependencies of specific modules, see the Ginkgo webpage below.
URL: https://ginkgo-project.github.io
Options: GINKGO_OPT, GINKGO_LIB, GINKGO_DIR, GINKGO_BUILD_TYPE (Release or
Debug).
Versions: Ginkgo >= 1.9.0. When building Ginkgo with distributed support, a
recent version of the "develop" branch is required (1.11 as defined
in include/ginkgo/config.hpp).
Versions: Ginkgo >= 1.9.0.
- AmgX (optional), used when MFEM_USE_AMGX = YES.
URL: https://github.com/NVIDIA/AMGX
@@ -808,7 +785,7 @@ The specific libraries and their options are:
Options: CONDUIT_OPT, CONDUIT_LIB.
Versions: Conduit >= 0.3.1.
- ADIOS2 (optional), used when MFEM_USE_ADIOS2 = YES.
- ADIOS2 (optional) used when MFEM_USE_ADIOS2 = YES.
URL: https://adios2.readthedocs.io/
Versions: ADIOS >= 2.5.0.
@@ -865,7 +842,6 @@ The specific libraries and their options are:
- HIP (optional), used when MFEM_USE_HIP = YES.
URL: https://rocmdocs.amd.com
Options: HIP_CXX, HIP_ARCH, HIP_OPT, HIP_LIB.
Versions: ROCm >= 5.6.1.
- OCCA (optional), used when MFEM_USE_OCCA = YES.
URL: https://libocca.org
@@ -876,7 +852,7 @@ The specific libraries and their options are:
URL: https://github.com/CEED/libCEED
https://ceed.exascaleproject.org/libceed
Options: CEED_DIR, CEED_OPT, CEED_LIB.
Versions: libCEED >= 0.12.0.
Versions: libCEED >= 0.12.
- RAJA (optional), used when MFEM_USE_RAJA = YES.
Beginning with MFEM v4.5.1, only RAJA v2022.10.3+ is supported.
@@ -884,7 +860,7 @@ The specific libraries and their options are:
Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
Versions: RAJA >= 2022.10.3.
- Moonolith (optional), used when MFEM_USE_MOONOLITH = YES.
- Moonolith (optional), use when MFEM_USE_MOONOLITH = YES.
URL: https://bitbucket.org/zulianp/par_moonolith
Options: MOONOLITH_DIR
Versions: MOONOLITH >= 1.1.0.
@@ -972,7 +948,7 @@ CMAKE_BUILD_TYPE which can be set to standard values like "Debug", and "Release"
To use a specific generator use the "-G <generator>" option of cmake:
cmake <mfem-source-dir> -G "Xcode"
cmake <mfem-source-dir> -G "Visual Studio 17 2022"
cmake <mfem-source-dir> -G "Visual Studio 12 2013"
cmake <mfem-source-dir> -G "MinGW Makefiles"
With CMake it is possible to build MFEM as a shared library using the standard
@@ -1098,10 +1074,6 @@ The following options are CMake specific:
MFEM_ENABLE_TESTING - Enable the ctest framework for testing.
MFEM_ENABLE_EXAMPLES - Build all of the examples by default.
MFEM_ENABLE_MINIAPPS - Build all of the miniapps by default.
MFEM_FETCH_TPLS - Enable fetching of all supported third-party libraries.
MFEM_FETCH_GSLIB - Enable fetching of gslib.
MFEM_FETCH_HYPRE - Enable fetching of hypre.
MFEM_FETCH_METIS - Enable fetching of metis.
External libraries (CMake):
---------------------------
@@ -1163,13 +1135,6 @@ The following built-in CMake packages are also used:
set the <LIBNAME>_LIBRARIES option directly; the configuration option
<LIBNAME>_DIR is not supported.
The MFEM CMake build system also provides fetching (automated building) for the
packages/libraries listed below. Note that when fetching is enabled, any related
auto-detection functionality is disabled.
- GSLIB
- HYPRE
- METIS
Building without GNU make or CMake
==================================
@@ -1217,7 +1182,7 @@ larger problems, there are two options:
Specific options for HIP
========================
MFEM expects the `ROCM_PATH` environment variable to be set to the path of the
ROCm install, as well as having `$ROCM_PATH/bin` in `PATH`.
ROCM install, as well as having `$ROCM_PATH/bin` in `PATH`.
Specific options for RAJA+HIP+MPI
=================================
-1
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@@ -28,7 +28,6 @@ license files. These software products and their licenses are as follows:
* AmgXWrapper (linalg/amgxsolver.{hpp,cpp}) -- MIT license
* Catch++ (tests/unit/catch.hpp) -- Boost 1.0 license
* Gecko (general/gecko.{cpp,hpp}) -- BSD 3-clause license
* gslib (fem/gslib.{cpp,hpp}, mesh/bb_grid_map.{cpp,hpp}) -- BSD 3-clause license
* Picojson (fem/picojson.h) -- Custom 2-clause license
* TinyXML2 (general/tinyxml2.{cpp,h}) -- zlib license
* Zstr (general/zstr.hpp) -- MIT license
-34
View File
@@ -35,7 +35,6 @@ set(MFEM_USE_SUITESPARSE @MFEM_USE_SUITESPARSE@)
set(MFEM_USE_SUPERLU @MFEM_USE_SUPERLU@)
set(MFEM_USE_MUMPS @MFEM_USE_MUMPS@)
set(MFEM_USE_STRUMPACK @MFEM_USE_STRUMPACK@)
set(MFEM_USE_CUDSS @MFEM_USE_CUDSS@)
set(MFEM_USE_GINKGO @MFEM_USE_GINKGO@)
set(MFEM_USE_AMGX @MFEM_USE_AMGX@)
set(MFEM_USE_MAGMA @MFEM_USE_MAGMA@)
@@ -85,39 +84,6 @@ set_and_check(MFEM_LIBRARY_DIR "@PACKAGE_LIB_INSTALL_DIR@")
check_required_components(MFEM)
include(CMakeFindDependencyMacro)
if (MFEM_USE_CUDA)
# required for projects linking to MFEM+CUDA, even if they don't use CUDA directly
find_dependency(CUDAToolkit)
endif (MFEM_USE_CUDA)
if (MFEM_USE_HIP)
# hip/rocm uses the modern MFEM way of linking to targets, need to find dependencies
find_dependency(HIP)
find_dependency(HIPBLAS)
find_dependency(HIPSPARSE)
if (MFEM_USE_MPI)
# assume HYPRE uses HIP
# alternatively could check HYPRE_USING_HIP
find_dependency(rocsparse)
find_dependency(rocrand)
find_dependency(rocsolver)
endif (MFEM_USE_MPI)
endif (MFEM_USE_HIP)
if (MFEM_USE_RAJA)
find_dependency(RAJA)
endif()
if (MFEM_USE_CUDSS)
find_dependency(cudss)
endif (MFEM_USE_CUDSS)
if (MFEM_USE_UMPIRE)
find_dependency(umpire)
endif()
if (NOT TARGET mfem)
include(${CMAKE_CURRENT_LIST_DIR}/MFEMTargets.cmake)
endif (NOT TARGET mfem)
-9
View File
@@ -108,15 +108,6 @@
// Enable MFEM functionality based on the STRUMPACK library.
#cmakedefine MFEM_USE_STRUMPACK
// Enable MFEM functionality based on the cuDSS library.
#cmakedefine MFEM_USE_CUDSS
// CUDSS communication layer library path
#cmakedefine MFEM_CUDSS_COMM_LIB "@MFEM_CUDSS_COMM_LIB@"
// CUDSS threading layer library path
#cmakedefine MFEM_CUDSS_THREADING_LIB "@MFEM_CUDSS_THREADING_LIB@"
// Enable functionality based on the Ginkgo library.
#cmakedefine MFEM_USE_GINKGO
-68
View File
@@ -1,68 +0,0 @@
if (NOT cudss_DIR AND CUDSS_DIR)
set(cudss_DIR ${CUDSS_DIR}/lib/cmake/cudss)
endif()
message(STATUS "Looking for CUDSS ...")
message(STATUS " in CUDSS_DIR = ${CUDSS_DIR}")
message(STATUS " cudss_DIR = ${cudss_DIR}")
find_package(cudss)
set(CUDSS_FOUND ${cudss_FOUND})
set(CUDSS_LIBRARIES "cudss")
if (CUDSS_FOUND)
message(STATUS
"Found CUDSS target: ${CUDSS_LIBRARIES} (version: ${cudss_VERSION})")
else()
set(msg STATUS)
if (CUDSS_FIND_REQUIRED)
set(msg FATAL_ERROR)
endif()
message(${msg}
"CUDSS not found. Please set CUDSS_DIR to the install prefix.")
endif()
if(CUDSS_FOUND AND TARGET cudss)
get_target_property(CUDSS_LIBRARY_LOCATION cudss IMPORTED_LOCATION)
if(NOT CUDSS_LIBRARY_LOCATION)
get_target_property(CUDSS_LIBRARY_LOCATION cudss IMPORTED_LOCATION_RELEASE)
endif()
if(CUDSS_LIBRARY_LOCATION)
get_filename_component(CUDSS_LIBRARY_DIR "${CUDSS_LIBRARY_LOCATION}" DIRECTORY)
else()
message(WARNING "Could not determine the location of the cuDSS library.")
endif()
else()
message(WARNING "cuDSS target not available; cannot determine library directory.")
endif()
# Set the full name of the cuDSS threading library if OpenMP is enabled.
# The threading layer library (libcudss_mtlayer_gomp.so) is located under the
# cuDSS library directory by default.
if (MFEM_USE_OPENMP)
find_file(
CUDSS_THREADING_LIB
NAMES libcudss_mtlayer_gomp.so
PATHS ${CUDSS_LIBRARY_DIR}
NO_DEFAULT_PATH
)
if (NOT DEFINED MFEM_CUDSS_THREADING_LIB AND CUDSS_THREADING_LIB)
set(MFEM_CUDSS_THREADING_LIB "${CUDSS_THREADING_LIB}")
endif()
message(STATUS "CUDSS threading layer library: ${MFEM_CUDSS_THREADING_LIB}")
endif()
# Set the full name of the cuDSS communication library if MFEM use OpenMPI.
# The communication layer library (libcudss_commlayer_mpi.so) is located under the
# cuDSS library directory by default.
# The communication layer library is used pre-built communication layers for OpenMPI
# by default.
if (MFEM_USE_MPI)
find_file(
CUDSS_COMM_LIB
NAMES libcudss_commlayer_openmpi.so
PATHS ${CUDSS_LIBRARY_DIR}
NO_DEFAULT_PATH
)
if (NOT DEFINED MFEM_CUDSS_COMM_LIB AND CUDSS_COMM_LIB)
set(MFEM_CUDSS_COMM_LIB "${CUDSS_COMM_LIB}")
endif()
message(STATUS "CUDSS communication layer library: ${MFEM_CUDSS_COMM_LIB}")
endif()
+1 -36
View File
@@ -9,45 +9,10 @@
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Defines the following variables if fetching of TPLs is disabled (default):
# Defines the following variables:
# - GSLIB_FOUND
# - GSLIB_LIBRARIES
# - GSLIB_INCLUDE_DIRS
# otherwise, the following are defined:
# - GSLIB (imported library target)
if (MFEM_FETCH_GSLIB OR MFEM_FETCH_TPLS)
enable_language(C)
set(GSLIB_FETCH_VERSION 1.0.9)
add_library(GSLIB STATIC IMPORTED)
# set options (technically flags because GSLIB does not use cmake)
string(TOUPPER "${CMAKE_BUILD_TYPE}" BUILD_TYPE)
set(GSLIB_FLAGS "${CMAKE_C_FLAGS} ${CMAKE_C_FLAGS_${BUILD_TYPE}}")
if (BUILD_SHARED_LIBS)
set(GSLIB_FLAGS "${GSLIB_FLAGS} -fPIC")
endif()
# define external project and create future include directory so it is present
# to pass CMake checks at end of MFEM configuration step
message(STATUS "Will fetch GSLIB ${GSLIB_FETCH_VERSION} to be built with ${GSLIB_FLAGS}")
set(PREFIX ${CMAKE_BINARY_DIR}/fetch/gslib)
include(ExternalProject)
ExternalProject_Add(gslib
GIT_REPOSITORY https://github.com/Nek5000/gslib
GIT_TAG v${GSLIB_FETCH_VERSION}
GIT_SHALLOW TRUE
UPDATE_DISCONNECTED TRUE
PREFIX ${PREFIX}
CONFIGURE_COMMAND ""
BUILD_COMMAND cd ${PREFIX}/src/gslib && $(MAKE) clean && $(MAKE) DESTDIR=${PREFIX} MPI=$<BOOL:${MFEM_USE_MPI}> "CFLAGS=${GSLIB_FLAGS}"
INSTALL_COMMAND "")
file(MAKE_DIRECTORY ${PREFIX}/include)
# set imported library target properties
add_dependencies(GSLIB gslib)
set_target_properties(GSLIB PROPERTIES
IMPORTED_LOCATION ${PREFIX}/lib/libgs.a
INTERFACE_INCLUDE_DIRECTORIES ${PREFIX}/include)
return()
endif()
include(MfemCmakeUtilities)
mfem_find_package(GSLIB GSLIB GSLIB_DIR "include" gslib.h "lib" gs
+3 -99
View File
@@ -9,25 +9,21 @@
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Defines the following variables if fetching of TPLs is disabled (default):
# Defines the following variables:
# - HYPRE_FOUND
# - HYPRE_LIBRARIES
# - HYPRE_INCLUDE_DIRS
# - HYPRE_VERSION
# - HYPRE_USING_CUDA (internal)
# - HYPRE_USING_HIP (internal)
# otherwise, the following are defined:
# - HYPRE (imported library target)
# - HYPRE_VERSION (cache variable)
if (HYPRE_FOUND OR TARGET HYPRE)
if (HYPRE_FOUND)
if (HYPRE_USING_CUDA)
find_package(CUDAToolkit REQUIRED)
endif()
if (HYPRE_USING_HIP)
find_package(rocsparse REQUIRED)
find_package(rocrand REQUIRED)
find_package(rocsolver REQUIRED)
endif()
if (HYPRE_LIBRARIES AND HYPRE_INCLUDE_DIRS AND HYPRE_VERSION)
find_package_handle_standard_args(HYPRE
@@ -37,97 +33,6 @@ if (HYPRE_FOUND OR TARGET HYPRE)
endif()
endif()
if (MFEM_FETCH_HYPRE OR MFEM_FETCH_TPLS)
set(HYPRE_FETCH_VERSION 2.33.0)
set(HYPRE_FETCH_TAG "v${HYPRE_FETCH_VERSION}" CACHE STRING "Tag, branch, or commit for HYPRE")
add_library(HYPRE STATIC IMPORTED)
# set options and associated dependencies
set(HYPRE_CMAKE_OPTIONS "")
list(APPEND HYPRE_CMAKE_OPTIONS -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE})
if (BUILD_SHARED_LIBS)
list(APPEND HYPRE_CMAKE_OPTIONS -DCMAKE_POSITION_INDEPENDENT_CODE:BOOL=ON)
endif()
# collect all HYPRE_ENABLE variables and pass them to hypre, assuming they are BOOL.
get_cmake_property(all_vars VARIABLES)
foreach(var ${all_vars})
if(var MATCHES "^HYPRE_ENABLE")
list(APPEND HYPRE_CMAKE_OPTIONS "-D${var}:BOOL=${${var}}")
endif()
endforeach()
# process all MFEM_USE variables that impact hypre
if (MFEM_USE_CUDA)
list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_CUDA:BOOL=ON -DCMAKE_CUDA_ARCHITECTURES:STRING=${CMAKE_CUDA_ARCHITECTURES})
find_package(CUDAToolkit REQUIRED)
target_link_libraries(HYPRE INTERFACE CUDA::cusparse CUDA::curand CUDA::cublas)
elseif (MFEM_USE_HIP)
list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_HIP:BOOL=ON)
find_package(rocsparse REQUIRED)
find_package(rocrand REQUIRED)
target_link_libraries(HYPRE INTERFACE rocsparse rocrand)
endif()
if (MFEM_USE_CUDA OR MFEM_USE_HIP)
if (MFEM_USE_UMPIRE)
if (EXISTS ${umpire_DIR})
list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_UMPIRE:BOOL=ON -Dumpire_DIR:PATH=${umpire_DIR})
else()
message(FATAL_ERROR "MFEM_USE_UMPIRE=ON, however umpire_DIR isn't visible to HYPRE")
endif()
else()
list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_UMPIRE:BOOL=OFF)
message(WARNING
"================================================================================
Umpire is disabled while building HYPRE with GPU support.
This is not recommended for performance reasons!
Consider enabling Umpire with -DMFEM_USE_UMPIRE=ON and providing -DUMPIRE_DIR.
================================================================================")
endif()
endif()
if (MFEM_USE_SINGLE)
list(APPEND HYPRE_CMAKE_OPTIONS -DHYPRE_ENABLE_SINGLE:BOOL=ON)
endif()
# define external project and create future include directory so it is present
# to pass CMake checks at end of MFEM configuration step
message(STATUS "Will fetch HYPRE ${HYPRE_FETCH_TAG} to be built with ${HYPRE_CMAKE_OPTIONS}")
set(HYPRE_INSTALL ${CMAKE_BINARY_DIR}/fetch/hypre)
include(ExternalProject)
ExternalProject_Add(hypre
GIT_REPOSITORY https://github.com/hypre-space/hypre.git
GIT_TAG ${HYPRE_FETCH_TAG}
GIT_SHALLOW TRUE
GIT_PROGRESS TRUE
UPDATE_DISCONNECTED TRUE
SOURCE_SUBDIR src
PREFIX ${HYPRE_INSTALL}
CMAKE_CACHE_ARGS -DCMAKE_INSTALL_PREFIX:PATH=${HYPRE_INSTALL} -DCMAKE_INSTALL_LIBDIR:PATH=lib ${HYPRE_CMAKE_OPTIONS})
file(MAKE_DIRECTORY ${HYPRE_INSTALL}/include)
# set imported library target properties
add_dependencies(HYPRE hypre)
set_target_properties(HYPRE PROPERTIES
IMPORTED_LOCATION ${HYPRE_INSTALL}/lib/libHYPRE.a
INTERFACE_INCLUDE_DIRECTORIES ${HYPRE_INSTALL}/include)
# convert HYPRE version to integer
if (HYPRE_FETCH_TAG MATCHES "^v?([0-9]+)\\.([0-9]+)\\.([0-9]+)$")
# Exact release tag X.Y.Z
string(REGEX MATCHALL "[0-9]+" HYPRE_SPLIT_VERSION "${HYPRE_FETCH_TAG}")
elseif (HYPRE_FETCH_VERSION MATCHES "([0-9]+)\\.([0-9]+)(\\.([0-9]+))?")
string(REGEX MATCHALL "[0-9]+" HYPRE_SPLIT_VERSION "${HYPRE_FETCH_VERSION}")
else (NOT DEFINED HYPRE_VERSION)
message(FATAL_ERROR "Unable to find HYPRE release version. Please provide it via -DHYPRE_VERSION")
endif()
if (HYPRE_SPLIT_VERSION AND NOT DEFINED HYPRE_VERSION)
list(GET HYPRE_SPLIT_VERSION 0 HYPRE_MAJOR_VERSION)
list(GET HYPRE_SPLIT_VERSION 1 HYPRE_MINOR_VERSION)
if (HYPRE_SPLIT_VERSION GREATER 2)
list(GET HYPRE_SPLIT_VERSION 2 HYPRE_PATCH_VERSION)
else()
set(HYPRE_PATCH_VERSION 0)
endif()
math(EXPR HYPRE_VERSION "10000*${HYPRE_MAJOR_VERSION} + 100*${HYPRE_MINOR_VERSION} + ${HYPRE_PATCH_VERSION}")
set(HYPRE_VERSION ${HYPRE_VERSION} CACHE STRING "HYPRE version." FORCE)
endif()
return()
endif()
include(MfemCmakeUtilities)
mfem_find_package(HYPRE HYPRE HYPRE_DIR "include" "HYPRE.h" "lib" "HYPRE"
"Paths to headers required by HYPRE." "Libraries required by HYPRE."
@@ -192,8 +97,7 @@ endif()
if (HYPRE_FOUND AND HYPRE_USING_HIP)
find_package(rocsparse REQUIRED)
find_package(rocrand REQUIRED)
find_package(rocsolver REQUIRED)
list(APPEND HYPRE_LIBRARIES ${rocsparse_LIBRARIES} ${rocrand_LIBRARIES} roc::rocsolver roc::rocblas)
list(APPEND HYPRE_LIBRARIES ${rocsparse_LIBRARIES} ${rocrand_LIBRARIES})
set(HYPRE_LIBRARIES ${HYPRE_LIBRARIES} CACHE STRING
"HYPRE libraries + dependencies." FORCE)
message(STATUS "Updated HYPRE_LIBRARIES: ${HYPRE_LIBRARIES}")
+1 -38
View File
@@ -9,47 +9,10 @@
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Defines the following variables if fetching of TPLs is disabled (default):
# Defines the following variables:
# - METIS_FOUND
# - METIS_LIBRARIES
# - METIS_INCLUDE_DIRS
# - METIS_VERSION_5
# otherwise, the following are defined:
# - METIS (imported library target)
# - METIS_VERSION_5 (cache variable)
if (MFEM_FETCH_METIS OR MFEM_FETCH_TPLS)
enable_language(C)
set(METIS_FETCH_VERSION 4.0.3)
add_library(METIS STATIC IMPORTED)
# set options (technically flags because METIS does not use cmake)
set(METIS_FLAGS "-Wno-implicit-int -Wno-incompatible-pointer-types")
string(TOUPPER "${CMAKE_BUILD_TYPE}" BUILD_TYPE)
set(METIS_FLAGS "${METIS_FLAGS} ${CMAKE_C_FLAGS} ${CMAKE_C_FLAGS_${BUILD_TYPE}}")
if (BUILD_SHARED_LIBS)
set(METIS_FLAGS "${METIS_FLAGS} -fPIC")
endif()
# define external project
message(STATUS "Will fetch METIS ${METIS_FETCH_VERSION} to be built with ${METIS_FLAGS}")
set(PREFIX ${CMAKE_BINARY_DIR}/fetch/metis)
include(ExternalProject)
ExternalProject_Add(metis
GIT_REPOSITORY https://github.com/mfem/tpls
GIT_TAG b60352fbe9675d374b00828055e55be4584c7995 # tag from 1/16/25
GIT_SHALLOW TRUE
UPDATE_DISCONNECTED TRUE
PREFIX ${PREFIX}
CONFIGURE_COMMAND tar -xzf ../metis/metis-${METIS_FETCH_VERSION}-mac.tgz --strip=1
BUILD_COMMAND $(MAKE) clean && $(MAKE) "OPTFLAGS=${METIS_FLAGS}"
INSTALL_COMMAND mkdir -p ${PREFIX}/lib && cp libmetis.a ${PREFIX}/lib/)
# set imported library target properties
add_dependencies(METIS metis)
set_target_properties(METIS PROPERTIES
IMPORTED_LOCATION ${PREFIX}/lib/libmetis.a)
# set cache variables that would otherwise be set after mfem_find_package call
set(METIS_VERSION_5 FALSE CACHE BOOL "Is METIS version 5?")
return()
endif()
include(MfemCmakeUtilities)
mfem_find_package(METIS METIS METIS_DIR "include;Lib" "metis.h"
+3 -3
View File
@@ -14,12 +14,12 @@
# - UMPIRE_LIBRARIES
# - UMPIRE_INCLUDE_DIRS
if (NOT umpire_ROOT AND UMPIRE_DIR)
set(umpire_ROOT ${UMPIRE_DIR})
if (NOT umpire_DIR AND UMPIRE_DIR)
set(umpire_DIR ${UMPIRE_DIR}/lib/cmake/umpire)
endif()
message(STATUS "Looking for UMPIRE ...")
message(STATUS " in UMPIRE_DIR = ${UMPIRE_DIR}")
message(STATUS " umpire_ROOT = ${umpire_ROOT}")
message(STATUS " umpire_DIR = ${umpire_DIR}")
find_package(umpire CONFIG)
set(UMPIRE_FOUND ${umpire_FOUND})
set(UMPIRE_LIBRARIES "umpire")
+18 -92
View File
@@ -701,6 +701,7 @@ endfunction(mfem_find_library)
# Extract compile and link options needed by the given target.
#
function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
if (NOT TARGET ${Target})
return()
endif()
@@ -717,7 +718,7 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
get_target_property(IsImported ${tgt} IMPORTED)
# message(STATUS "${tgt}[IMPORTED]: ${IsImported}")
# Generally, the possible target types are: STATIC_LIBRARY, MODULE_LIBRARY,
# SHARED_LIBRARY, INTERFACE_LIBRARY, UNKNOWN_LIBRARY, EXECUTABLE.
# SHARED_LIBRARY, INTERFACE_LIBRARY, EXECUTABLE.
get_target_property(type ${tgt} TYPE)
# message(STATUS "${tgt}[TYPE]: ${type}")
unset(ImportConfig)
@@ -765,7 +766,7 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
else()
message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
endif()
elseif ("${type}" STREQUAL "SHARED_LIBRARY" OR "${type}" STREQUAL "UNKNOWN_LIBRARY")
elseif ("${type}" STREQUAL "SHARED_LIBRARY")
get_target_property(Location ${tgt} LOCATION)
if (Location)
get_filename_component(Dir ${Location} DIRECTORY)
@@ -798,12 +799,7 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
# message(STATUS "Lib = ${Lib}")
# Filter-out generator expressions
if (NOT ("${Lib}" MATCHES "^\\$"))
if(NOT ("${Lib}" STREQUAL "dl"))
list(APPEND LinkOpts "${Lib}")
else()
# for some reason libdl doesn't include the "-l"
list(APPEND LinkOpts "-ldl")
endif()
list(APPEND LinkOpts "${Lib}")
endif()
else()
mfem_get_target_options(${Lib} COpts LOpts)
@@ -892,18 +888,9 @@ function(mfem_export_mk_files)
set(${var} NO)
endif()
endforeach()
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
set(MFEM_CXX ${CMAKE_CUDA_COMPILER})
if(MFEM_CUDA_COMPILER_IS_NVCC)
set(MFEM_HOST_CXX ${CMAKE_CUDA_HOST_COMPILER})
else()
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
endif()
else()
# mfem doesn't use enable_language(HIP)
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
endif()
# TODO: Add support for MFEM_USE_CUDA=YES
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
set(MFEM_HOST_CXX ${MFEM_CXX})
set(MFEM_CPPFLAGS "")
get_target_property(cxx_std mfem CXX_STANDARD)
# For now, we ignore the setting of the CXX_EXTENSIONS property. If this
@@ -913,50 +900,6 @@ function(mfem_export_mk_files)
string(STRIP
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
MFEM_CXXFLAGS)
if(MFEM_EXPORT_GPU_CONFIG)
if (MFEM_USE_CUDA)
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} ${CMAKE_CUDA_FLAGS}")
if (MFEM_CUDA_COMPILER_IS_NVCC)
set(MFEM_CXXFLAGS "-x=cu ${MFEM_CXXFLAGS} -ccbin ${CMAKE_CXX_COMPILER} --forward-unknown-to-host-compiler")
# The following intentionally hides CUDA deprecation warnings
foreach(ENTRY IN LISTS CUDAToolkit_INCLUDE_DIRS)
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -isystem ${ENTRY}")
endforeach()
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
# architecture flags not part of CMAKE_CUDA_FLAGS
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -arch=${CMAKE_CUDA_ARCHITECTURES}")
else()
foreach (ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
set(MFEM_CXXFLAGS
"${MFEM_CXXFLAGS} -gencode arch=compute_${ENTRY},code=sm_${ENTRY}")
endforeach()
endif()
endif()
else()
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xcuda --cuda-path=${CUDAToolkit_LIBRARY_ROOT}")
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
# architecture flags not part of CMAKE_CUDA_FLAGS
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
# TODO: not supported
else()
foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
set(MFEM_CXXFLAGS "-cuda-gpu-arch=sm_${ENTRY} ${MFEM_CXXFLAGS}")
endforeach()
endif()
endif()
endif()
elseif (MFEM_USE_HIP)
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xhip")
foreach(ENTRY IN LISTS CMAKE_HIP_ARCHITECTURES)
set(MFEM_CXXFLAGS "--offload-arch=${ENTRY} ${MFEM_CXXFLAGS}")
endforeach()
endif()
endif()
set(MFEM_TPLFLAGS "")
foreach(dir ${TPL_INCLUDE_DIRS})
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
@@ -987,26 +930,14 @@ function(mfem_export_mk_files)
set(MFEM_SHARED NO)
set(MFEM_STATIC YES)
endif()
if (MFEM_USE_CUDA)
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} -lcudart")
endif()
set(MFEM_BUILD_TAG "${CMAKE_SYSTEM}")
set(MFEM_PREFIX "${CMAKE_INSTALL_PREFIX}")
# For the next 4 variables, these are the values for the build-tree version of
# For the next 4 variable, these are the values for the build-tree version of
# 'config.mk'
set(MFEM_INC_DIR "${PROJECT_BINARY_DIR}")
set(MFEM_LIB_DIR "${PROJECT_BINARY_DIR}")
set(MFEM_TEST_MK "${PROJECT_SOURCE_DIR}/config/test.mk")
set(MFEM_CONFIG_EXTRA "MFEM_BUILD_DIR ?= ${PROJECT_BINARY_DIR}")
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
if (MFEM_CUDA_COMPILER_IS_NVCC)
set(MFEM_XLINKER "-Xlinker=")
else()
set(MFEM_XLINKER "${CMAKE_CUDA_LINKER_WRAPPER_FLAG}")
endif()
else()
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
endif()
set(MFEM_MPIEXEC ${MPIEXEC})
if (NOT MFEM_MPIEXEC)
set(MFEM_MPIEXEC "mpirun")
@@ -1054,21 +985,16 @@ function(mfem_export_mk_files)
# handle interfaces (e.g., SCOREC::apf)
if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*" OR "${lib}" MATCHES "ParMoonolith::.*")
elseif (TARGET "${lib}")
mfem_get_target_options(${lib} CompileOpts2 LinkOpts2)
# remove generator expressions
string(GENEX_STRIP "${CompileOpts2}" CompileOpts)
string(GENEX_STRIP "${LinkOpts2}" LinkOpts)
mfem_get_target_options(${lib} CompileOpts LinkOpts)
# Removing duplicates may lead to issues:
# list(REMOVE_DUPLICATES CompileOpts)
# list(REMOVE_DUPLICATES LinkOpts)
# message(WARNING "${lib}[LinkOpts]: ${LinkOpts}")
# message(WARNING "${lib}[CompileOpts]: ${CompileOpts}")
foreach(LOpt IN LISTS LinkOpts)
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpt}")
endforeach()
foreach(COpt IN LISTS CompileOpts)
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpt}")
endforeach()
string(REPLACE ";" " " COpts "${CompileOpts}")
string(REPLACE ";" " " LOpts "${LinkOpts}")
# message(STATUS "${lib}[COpts]: '${COpts}'")
# message(STATUS "${lib}[LOpts]: '${LOpts}'")
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpts}")
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpts}")
# message(FATAL_ERROR "***** interface lib found ... exiting *****")
# handle static and shared libs
elseif ("${suffix}" STREQUAL "${CMAKE_SHARED_LIBRARY_SUFFIX}")
@@ -1076,7 +1002,7 @@ function(mfem_export_mk_files)
get_filename_component(fullLibName ${lib} NAME_WE)
string(REGEX REPLACE "^lib" "" libname ${fullLibName})
set(MFEM_EXT_LIBS
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
else()
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${lib}")
endif()
@@ -1085,7 +1011,7 @@ function(mfem_export_mk_files)
# Create the build-tree version of 'config.mk'
configure_file(
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
"${PROJECT_BINARY_DIR}/config/config.mk" @ONLY)
"${PROJECT_BINARY_DIR}/config/config.mk")
# Copy 'test.mk' from the source-tree to the build-tree
configure_file(
"${PROJECT_SOURCE_DIR}/config/test.mk"
@@ -1103,7 +1029,7 @@ function(mfem_export_mk_files)
# Create the install-tree version of 'config.mk'
configure_file(
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
"${PROJECT_BINARY_DIR}/config/config-install.mk" @ONLY)
"${PROJECT_BINARY_DIR}/config/config-install.mk")
# Install rules for 'config.mk' and 'test.mk'
install(FILES ${PROJECT_SOURCE_DIR}/config/test.mk
+1 -10
View File
@@ -23,14 +23,11 @@
#include "_config.hpp"
#endif
#include <cstdint>
#include <climits>
namespace mfem
{
#if (defined(MFEM_USE_CUDA) && defined(__CUDACC__)) || \
(defined(MFEM_USE_HIP) && defined(__HIP__))
(defined(MFEM_USE_HIP) && defined(__HIPCC__))
#define MFEM_HOST_DEVICE __host__ __device__
#else
#define MFEM_HOST_DEVICE
@@ -157,10 +154,4 @@ constexpr real_t operator""_r(unsigned long long v)
#endif
#endif // MFEM_USE_MPI not defined
#ifndef MFEM_USE_CUDA
#ifdef MFEM_USE_CUDSS
#error Building with cuDSS (MFEM_USE_CUDSS=YES) requires CUDA (MFEM_USE_CUDA=YES)
#endif
#endif // MFEM_USE_CUDSS not defined
#endif // MFEM_CONFIG_HPP
-9
View File
@@ -108,15 +108,6 @@
// Enable MFEM functionality based on the STRUMPACK library.
// #define MFEM_USE_STRUMPACK
// Enable MFEM functionality based on the cuDSS library.
// #define MFEM_USE_CUDSS
// CUDSS communication layer library path
// #define MFEM_CUDSS_COMM_LIB "@MFEM_CUDSS_COMM_LIB@"
// CUDSS threading layer library path
// #define MFEM_CUDSS_THREADING_LIB "@MFEM_CUDSS_THREADING_LIB@"
// Enable MFEM features based on the Ginkgo library.
// #define MFEM_USE_GINKGO
-4
View File
@@ -36,9 +36,6 @@ MFEM_USE_SUPERLU = @MFEM_USE_SUPERLU@
MFEM_USE_SUPERLU5 = @MFEM_USE_SUPERLU5@
MFEM_USE_MUMPS = @MFEM_USE_MUMPS@
MFEM_USE_STRUMPACK = @MFEM_USE_STRUMPACK@
MFEM_USE_CUDSS = @MFEM_USE_CUDSS@
MFEM_CUDSS_COMM_LIB = @MFEM_CUDSS_COMM_LIB@
MFEM_CUDSS_THREADING_LIB = @MFEM_CUDSS_THREADING_LIB@
MFEM_USE_GINKGO = @MFEM_USE_GINKGO@
MFEM_USE_AMGX = @MFEM_USE_AMGX@
MFEM_USE_MAGMA = @MFEM_USE_MAGMA@
@@ -91,7 +88,6 @@ MFEM_BUILD_TAG = @MFEM_BUILD_TAG@
MFEM_PREFIX = @MFEM_PREFIX@
MFEM_INC_DIR = @MFEM_INC_DIR@
MFEM_LIB_DIR = @MFEM_LIB_DIR@
MFEM_XLINKER = @MFEM_XLINKER@
# Location of test.mk
MFEM_TEST_MK = @MFEM_TEST_MK@
-8
View File
@@ -38,7 +38,6 @@ option(MFEM_USE_SUPERLU "Enable SuperLU_DIST usage" OFF)
option(MFEM_USE_SUPERLU5 "Use the old SuperLU_DIST 5.1 version" OFF)
option(MFEM_USE_MUMPS "Enable MUMPS usage" OFF)
option(MFEM_USE_STRUMPACK "Enable STRUMPACK usage" OFF)
option(MFEM_USE_CUDSS "Enable cuDSS usage" OFF)
option(MFEM_USE_GINKGO "Enable Ginkgo usage" OFF)
option(MFEM_USE_AMGX "Enable AmgX usage" OFF)
option(MFEM_USE_MAGMA "Enable MAGMA usage" OFF)
@@ -90,13 +89,6 @@ option(MFEM_ENABLE_EXAMPLES "Build all of the examples" OFF)
option(MFEM_ENABLE_MINIAPPS "Build all of the miniapps" OFF)
option(MFEM_ENABLE_BENCHMARKS "Build all of the benchmarks" OFF)
# Allow a user to specify fetching of certain third-party libraries instead of
# searching for existing installations.
option(MFEM_FETCH_TPLS "Enable fetching of all supported third-party libraries" OFF)
option(MFEM_FETCH_GSLIB "Enable fetching of GSLIB" OFF)
option(MFEM_FETCH_HYPRE "Enable fetching of hypre" OFF)
option(MFEM_FETCH_METIS "Enable fetching of METIS" OFF)
# Setting CXX/MPICXX on the command line or in user.cmake will overwrite the
# autodetected C++ compiler.
# set(CXX g++)
+3 -18
View File
@@ -18,7 +18,6 @@
# Some choices below are based on the OS type:
NOTMAC := $(subst Darwin,,$(shell uname -s))
ASTYLE_BIN = astyle
ETAGS_BIN = $(shell command -v etags 2> /dev/null)
EGREP_BIN = $(shell command -v egrep 2> /dev/null)
@@ -58,7 +57,7 @@ CUDA_DIR = $(or $(CUDA_HOME),$(patsubst %/,%,$(dir \
CLANG_CUDA_FLAGS = -xcuda --cuda-path=$(CUDA_DIR) --cuda-gpu-arch=$(CUDA_ARCH)
# flags for nvcc
NVCC_FLAGS = -x=cu --expt-extended-lambda --expt-relaxed-constexpr \
-arch=$(CUDA_ARCH) -isystem "$(CUDA_DIR)/include"
-arch=$(CUDA_ARCH)
# Prefixes for passing flags to the host compiler and linker when using
# CUDA_CXX=nvcc
CUDA_XCOMPILER = -Xcompiler=
@@ -153,7 +152,6 @@ MFEM_USE_SUPERLU = NO
MFEM_USE_SUPERLU5 = NO
MFEM_USE_MUMPS = NO
MFEM_USE_STRUMPACK = NO
MFEM_USE_CUDSS = NO
MFEM_USE_GINKGO = NO
MFEM_USE_AMGX = NO
MFEM_USE_MAGMA = NO
@@ -369,19 +367,6 @@ STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
STRUMPACK_LIB = -L$(STRUMPACK_DIR)/lib -lstrumpack $(MPI_FORTRAN_LIB)\
$(SCOTCH_LIB) $(SCALAPACK_LIB)
# CUDSS library configuration
CUDSS_DIR = @MFEM_DIR@/../cudss
CUDSS_INCLUDE_DIR = $(CUDSS_DIR)/include
CUDSS_LIBRARY_DIR = $(CUDSS_DIR)/lib
CUDSS_OPT = -I$(CUDSS_INCLUDE_DIR)
CUDSS_LIB = \
$(XLINKER)-rpath,$(CUDSS_LIBRARY_DIR) -L$(CUDSS_LIBRARY_DIR) -lcudss
# The cuDSS communication and threading libraries.
MFEM_CUDSS_COMM_LIB = $(abspath $(wildcard $(or $(CUDSS_COMM_LIB),\
$(subst @MFEM_DIR@,$(MFEM_DIR), $(CUDSS_LIBRARY_DIR)/libcudss_commlayer_openmpi.so))))
MFEM_CUDSS_THREADING_LIB = $(abspath $(wildcard $(or $(CUDSS_THREADING_LIB),\
$(subst @MFEM_DIR@,$(MFEM_DIR),$(CUDSS_LIBRARY_DIR)/libcudss_mtlayer_gomp.so))))
# Ginkgo library configuration
GINKGO_DIR = @MFEM_DIR@/../ginkgo/install
GINKGO_SEARCH_DIR = $(subst @MFEM_DIR@,$(MFEM_DIR),$(GINKGO_DIR))
@@ -422,7 +407,7 @@ AMGX_LIB = -L$(AMGX_DIR)/lib -lamgx -lcusparse -lcusolver -lcublas -lnvToolsExt
# MAGMA library configuration
MAGMA_DIR = @MFEM_DIR@/../magma
MAGMA_OPT = -I$(MAGMA_DIR)/include
MAGMA_LIB = -L$(MAGMA_DIR)/lib -l:libmagma.a $(LAPACK_LIB)
MAGMA_LIB = -L$(MAGMA_DIR)/lib -l:libmagma.a -lcublas -lcusparse $(LAPACK_LIB)
# GnuTLS library configuration
GNUTLS_OPT =
@@ -635,7 +620,7 @@ PARELAG_LIB = -L$(PARELAG_DIR)/build/src -lParELAG
AXOM_DIR = @MFEM_DIR@/../axom
TRIBOL_DIR = @MFEM_DIR@/../tribol
TRIBOL_OPT = -I$(TRIBOL_DIR)/include -I$(AXOM_DIR)/include
TRIBOL_LIB = -L$(TRIBOL_DIR)/lib -ltribol -ltribol_shared -lredecomp -L$(AXOM_DIR)/lib -laxom_mint\
TRIBOL_LIB = -L$(TRIBOL_DIR)/lib -ltribol -lredecomp -L$(AXOM_DIR)/lib -laxom_mint\
-laxom_slam -laxom_slic -laxom_core
# Enzyme configuration
+1 -1
View File
@@ -101,7 +101,7 @@ $ cd ../miniapps
$ ls
CMakeLists.txt common meshing nurbs shifted toys
adjoint electromagnetics mtop parelag solvers
autodiff gslib fluids performance tools
autodiff gslib navier performance tools
```
And an example in "toys"
+2 -14
View File
@@ -85,10 +85,6 @@ groups_serial=(
"DPG miniapps:"
"miniapps/dpg"
"{acoustics,convection-diffusion,diffusion,maxwell}.cpp"'
'"isf"
"Schrodinger flow miniapps:"
"miniapps/fluids/schrodinger-flow"
"schrodinger_flow.cpp"'
'"gslib"
"GSLIB miniapps:"
"miniapps/gslib"
@@ -170,10 +166,6 @@ groups_parallel=(
"miniapps/electromagnetics"
"joule.cpp"'
# "{joule,maxwell,tesla,volta}.cpp"' # todo: multiline sample runs
'"isf"
"Schrodinger flow miniapps:"
"miniapps/fluids/schrodinger-flow"
"pschrodinger_flow.cpp"'
'"adjoint"
"Adjoint miniapps:"
"miniapps/adjoint"
@@ -199,7 +191,7 @@ groups_parallel=(
# todo: miniapps/multidomain
'"navier"
"Navier miniapps:"
"miniapps/fluids/navier"
"miniapps/navier"
"navier_cht.cpp"'
# todo: add other navier miniapps
'"nurbs"
@@ -289,10 +281,6 @@ groups_all=(
"miniapps/electromagnetics"
"joule.cpp"'
# "{joule,maxwell,tesla,volta}.cpp"' # todo: multiline sample runs
'"isf"
"Schrodinger flow miniapps:"
"miniapps/fluids/schrodinger-flow"
"{,p}schrodinger_flow.cpp"'
'"adjoint"
"Adjoint miniapps:"
"miniapps/adjoint"
@@ -320,7 +308,7 @@ groups_all=(
# todo: miniapps/multidomain
'"navier"
"Navier miniapps:"
"miniapps/fluids/navier"
"miniapps/navier"
"navier_cht.cpp"'
# todo: add other navier miniapps
'"nurbs"
-156
View File
@@ -1,156 +0,0 @@
MFEM mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
# PYRAMID = 7
#
dimension
2
elements
25
3 3 0 1 2 3
3 3 1 4 5 2
3 3 4 6 7 5
3 3 6 8 9 7
3 3 8 10 11 9
3 3 10 12 13 11
3 3 12 14 15 13
3 3 14 16 17 15
3 3 16 18 19 17
3 3 18 20 21 19
3 3 20 22 23 21
3 3 22 24 25 23
3 3 24 26 27 25
3 3 26 28 29 27
3 3 28 30 31 29
3 3 30 32 33 31
3 3 32 34 35 33
3 3 17 19 36 37
3 3 37 36 38 39
3 3 39 38 40 41
3 3 41 40 42 43
3 3 43 42 44 45
3 3 45 44 46 47
3 3 47 46 48 49
3 3 49 48 50 51
boundary
52
2 1 0 1
2 1 2 3
1 1 3 0
2 1 1 4
2 1 5 2
2 1 4 6
2 1 7 5
2 1 6 8
2 1 9 7
2 1 8 10
2 1 11 9
2 1 10 12
2 1 13 11
2 1 12 14
2 1 15 13
2 1 14 16
2 1 17 15
2 1 16 18
2 1 18 20
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3 1 34 35
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2 1 19 36
2 1 37 17
2 1 36 38
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2 1 43 41
2 1 42 44
2 1 45 43
2 1 44 46
2 1 47 45
2 1 46 48
2 1 49 47
2 1 48 50
4 1 50 51
2 1 51 49
vertices
52
2
0 0
1 0
1 1
0 1
2 0
2 1
3 0
3 1
4 0
4 1
5 0
5 1
6 0
6 1
7 0
7 1
8 0
8 1
9 0
9 1
10 0
10 1
11 0
11 1
12 0
12 1
13 0
13 1
14 0
14 1
15 0
15 1
16 0
16 1
17 0
17 1
9 2
8 2
9 3
8 3
9 4
8 4
9 5
8 5
9 6
8 6
9 7
8 7
9 8
8 8
9 9
8 9
-593
View File
@@ -1,593 +0,0 @@
MFEM mesh v1.0
# Created by: Pointwise
# MFEM Geometry Types:
#
# POINT = 0
# SEGMENT = 1
# TRIANGLE = 2
# SQUARE = 3
# TETRAHEDRON = 4
# CUBE = 5
# PRISM = 6
dimension
2
elements
160
1 3 1 164 163 0
1 3 164 165 162 163
1 3 2 166 164 1
1 3 166 132 165 164
1 3 3 167 166 2
1 3 167 131 132 166
1 3 4 168 167 3
1 3 168 130 131 167
1 3 5 169 168 4
1 3 169 129 130 168
1 3 6 170 169 5
1 3 170 128 129 169
1 3 171 172 170 6
1 3 172 127 128 170
1 3 124 125 172 171
1 3 125 126 127 172
1 3 162 165 173 161
1 3 165 132 133 173
1 3 161 173 174 160
1 3 173 133 134 174
1 3 160 174 175 159
1 3 174 134 135 175
1 3 6 7 176 171
1 3 7 8 177 176
1 3 171 176 123 124
1 3 176 177 122 123
1 3 159 175 178 158
1 3 175 135 136 178
1 3 158 178 179 157
1 3 178 136 137 179
1 3 157 179 180 156
1 3 179 137 138 180
1 3 122 177 181 121
1 3 177 8 182 181
1 3 8 9 183 182
1 3 9 10 184 183
1 3 10 11 185 184
1 3 11 12 186 185
1 3 12 13 187 186
1 3 13 14 15 187
1 3 121 181 119 120
1 3 181 182 118 119
1 3 182 183 117 118
1 3 183 184 188 117
1 3 184 185 109 188
1 3 185 186 108 109
1 3 186 187 189 108
1 3 187 15 16 189
1 3 109 110 190 188
1 3 110 111 191 190
1 3 111 112 113 191
1 3 188 190 116 117
1 3 190 191 115 116
1 3 191 113 114 115
1 3 189 192 107 108
1 3 192 193 106 107
1 3 193 194 105 106
1 3 194 195 104 105
1 3 195 196 103 104
1 3 16 17 192 189
1 3 17 18 193 192
1 3 18 19 194 193
1 3 19 20 195 194
1 3 20 21 196 195
1 3 97 98 197 96
1 3 98 99 198 197
1 3 99 100 199 198
1 3 100 101 200 199
1 3 101 102 201 200
1 3 102 103 202 201
1 3 103 196 203 202
1 3 196 21 22 203
1 3 96 197 204 95
1 3 197 198 39 204
1 3 198 199 38 39
1 3 199 200 205 38
1 3 200 201 32 205
1 3 201 202 31 32
1 3 202 203 206 31
1 3 203 22 23 206
1 3 32 33 207 205
1 3 33 34 35 207
1 3 205 207 37 38
1 3 207 35 36 37
1 3 39 40 208 204
1 3 40 41 209 208
1 3 41 42 210 209
1 3 42 43 211 210
1 3 43 44 212 211
1 3 204 208 94 95
1 3 208 209 93 94
1 3 209 210 92 93
1 3 210 211 91 92
1 3 211 212 90 91
1 3 90 212 213 89
1 3 212 44 214 213
1 3 44 45 215 214
1 3 45 46 216 215
1 3 46 47 217 216
1 3 47 48 218 217
1 3 48 49 219 218
1 3 49 50 51 219
1 3 89 213 87 88
1 3 213 214 86 87
1 3 214 215 85 86
1 3 215 216 84 85
1 3 216 217 83 84
1 3 217 218 82 83
1 3 218 219 220 82
1 3 219 51 52 220
1 3 53 221 220 52
1 3 221 81 82 220
1 3 54 222 221 53
1 3 222 80 81 221
1 3 55 223 222 54
1 3 223 79 80 222
1 3 26 27 224 25
1 3 27 28 29 224
1 3 25 224 225 24
1 3 224 29 30 225
1 3 24 225 206 23
1 3 225 30 31 206
1 3 154 155 226 153
1 3 155 156 180 226
1 3 153 226 227 152
1 3 226 180 138 227
1 3 152 227 228 151
1 3 227 138 139 228
1 3 151 228 229 150
1 3 228 139 140 229
1 3 150 229 230 149
1 3 229 140 141 230
1 3 149 230 231 148
1 3 230 141 142 231
1 3 148 231 232 147
1 3 231 142 143 232
1 3 147 232 145 146
1 3 232 143 144 145
1 3 56 233 223 55
1 3 233 78 79 223
1 3 57 234 233 56
1 3 234 77 78 233
1 3 58 235 234 57
1 3 235 76 77 234
1 3 61 236 59 60
1 3 236 235 58 59
1 3 62 237 236 61
1 3 237 76 235 236
1 3 63 238 237 62
1 3 238 75 76 237
1 3 64 239 238 63
1 3 239 74 75 238
1 3 65 240 239 64
1 3 240 73 74 239
1 3 66 241 240 65
1 3 241 72 73 240
1 3 67 242 241 66
1 3 242 71 72 241
1 3 68 69 242 67
1 3 69 70 71 242
boundary
164
3 1 0 1
3 1 1 2
3 1 2 3
3 1 3 4
3 1 4 5
3 1 5 6
3 1 6 7
3 1 7 8
3 1 8 9
3 1 9 10
3 1 10 11
3 1 11 12
3 1 12 13
3 1 13 14
3 1 16 17
3 1 17 18
3 1 18 19
3 1 19 20
3 1 20 21
3 1 21 22
3 1 22 23
3 1 23 24
3 1 24 25
3 1 25 26
3 1 26 27
3 1 27 28
3 1 28 29
3 1 29 30
3 1 30 31
3 1 31 32
3 1 32 33
3 1 33 34
3 1 34 35
3 1 35 36
3 1 36 37
3 1 37 38
3 1 38 39
3 1 39 40
3 1 40 41
3 1 41 42
3 1 42 43
3 1 43 44
3 1 49 50
3 1 48 49
3 1 47 48
3 1 46 47
3 1 45 46
3 1 44 45
3 1 52 53
3 1 53 54
3 1 54 55
3 1 57 58
3 1 56 57
3 1 55 56
3 1 60 61
3 1 61 62
3 1 62 63
3 1 63 64
3 1 64 65
3 1 65 66
3 1 66 67
3 1 67 68
3 1 75 76
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3 1 73 74
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3 1 70 71
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3 1 81 82
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3 1 94 95
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3 1 96 97
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3 1 108 109
3 1 109 110
3 1 110 111
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3 1 112 113
3 1 113 114
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3 1 116 117
3 1 119 120
3 1 118 119
3 1 117 118
3 1 131 132
3 1 130 131
3 1 129 130
3 1 128 129
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3 1 126 127
3 1 132 133
3 1 133 134
3 1 134 135
3 1 137 138
3 1 136 137
3 1 135 136
3 1 138 139
3 1 139 140
3 1 140 141
3 1 141 142
3 1 142 143
3 1 143 144
3 1 147 148
3 1 146 147
3 1 153 154
3 1 152 153
3 1 151 152
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3 1 148 149
3 1 156 157
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3 1 161 162
3 1 160 161
3 1 159 160
2 1 69 70
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3 1 88 89
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3 1 121 122
3 1 120 121
3 1 123 124
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3 1 125 126
3 1 124 125
1 1 144 145
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3 1 15 16
3 1 14 15
3 1 50 51
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3 1 59 60
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3 1 154 155
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3 1 163 0
3 1 162 163
vertices
243
2
4 4
4 3.5
4 3
4 2.5
4 2
4 1.5
4 1
4.5 1
5 1
5 1.5
5 2
5 2.5
5 3
5 3.5
5 4
5.500 4
6 4
6.500 4
7 4
7.5 4
8 4
8.5 4
9 4
9.5 4
10 4
10.5 4
11 4
11 3.5
11 3
10.5 3
10 3
9.5 3
9.5 2.5
10 2.5
10.5 2.5
10.5 2
10.5 1.5
10 1.5
9.5 1.5
9.5 1
10 1
10.5 1
11 1
11.5 1
12 1
12 1.5
12 2
12 2.5
12 3
12 3.5
12 4
12.5 4
13 4
13.333 3.75
13.666 3.5
14.000 3.25
14.333 3.5
14.666 3.75
15.000 4
15.500 4
16.000 4
16.000 3.5
16.000 3
16.000 2.5
16.000 2
16.000 1.5
16.000 1
16.000 0.5
16.000 0
15.500 0
15.000 0
15.000 0.5000000000000002
15.000 1
15.000 1.5
15.000 2
15.000 2.5
15.000 3
14.666 2.75
14.333 2.5
14.000 2.25
13.666 2.5
13.333 2.75
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13 2.5
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11.5 0
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10.5 0
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9.5 0
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8.5 0
8.5 0.5
8.5 1
8.5 1.5
8.5 2
8.5 2.5
8.5 3
8 3
7.5 3
7 3
6.500 3
6 3
6 2.5
6.5 2.5
7 2.5
7.5 2.5
7.5 2
7.5 1.5
7.000 1.5
6.5 1.5
6 1.5
6 1
6 0.5
6 0
5.5 0
5 0
4.5 0
4 0
3.5 0
3 0
3 0.500
3 1
3 1.5
3 2
3 2.5
3 3
2.666 2.75
2.333 2.5
2.000 2.25
1.666 2.5
1.333 2.75
1.000 3
1.000 2.5
1.000 2
1.000 1.5
1.000 1
1.000 0.5000
1.000 0
0.5000 0
0.0000 0
0.0000 0.5
0.0000 1
0.0000 1.5
0.0000 2
0.0000 2.5
0.0000 3
0.0000 3.5
0.0000 4
0.5000 4
1.000 4
1.333 3.75
1.666 3.5
2.000 3.25
2.333 3.5
2.666 3.75
3 4
3.5 4
3.5 3.5
3 3.5
3.5 3
3.5 2.5
3.5 2
3.5 1.5
3.5 1
4 0.5
3.5 0.5
2.666 3.25
2.333 3
2.000 2.75
4.5 0.5
5 0.5
1.666 3
1.333 3.25
1.000 3.5
5.5 0.5
5.500 1
5.500 1.5
5.500 2
5.500 2.5
5.500 3
5.500 3.5
6 2
6 3.5
6.5 2
7 2
6.5 3.5
7 3.5
7.5 3.5
8 3.5
8.5 3.5
9 0.5
9 1
9 1.5
9 2
9 2.5
9 3
9 3.5
9.5 0.5
9.5 2
9.5 3.5
10 2
10 0.5
10.5 0.5
11 0.5
11.5 0.5
12 0.5
12.5 0.500
12.5 1
12.5 1.5
12.5 2
12.5 2.5
12.5 3
12.5 3.5
13 3.5
13.333 3.250
13.666 3
14.000 2.75
10.5 3.5
10 3.5
0.500 3.5
0.500 3
0.500 2.5
0.500 2
0.500 1.5
0.500 1
0.500 0.5
14.333 3
14.666 3.25
15.000 3.5
15.500 3.5
15.500 3
15.500 2.5
15.500 2
15.500 1.5
15.500 1
15.500 0.5
-342
View File
@@ -1,342 +0,0 @@
MFEM NURBS NC-patch mesh v1.0
dimension
3
elements
13
0 1 5 0 8 10 11 9 4 6 7 5
0 1 5 0 18 8 24 32 30 23 36 38
0 1 5 0 0 18 32 14 12 30 38 29
0 1 5 0 32 24 10 20 38 36 26 35
0 1 5 0 14 32 20 2 29 38 35 16
0 1 5 0 30 23 36 38 31 22 37 39
0 1 5 0 12 30 38 29 13 31 39 28
0 1 5 0 38 36 26 35 39 37 27 34
0 1 5 0 29 38 35 16 28 39 34 17
0 1 5 0 31 22 37 39 19 9 25 33
0 1 5 0 13 31 39 28 1 19 33 15
0 1 5 0 39 37 27 34 33 25 11 21
0 1 5 0 28 39 34 17 15 33 21 3
boundary
31
9999 3 8 10 6 4
9999 3 10 11 7 6
9999 3 11 9 5 7
9999 3 9 8 4 5
9999 3 4 6 7 5
9999 3 32 24 8 18
9999 3 18 8 23 30
9999 3 14 32 18 0
9999 3 0 18 30 12
9999 3 14 0 12 29
9999 3 20 10 24 32
9999 3 10 20 35 26
9999 3 2 20 32 14
9999 3 20 2 16 35
9999 3 2 14 29 16
9999 3 30 23 22 31
9999 3 12 30 31 13
9999 3 29 12 13 28
9999 3 26 35 34 27
9999 3 35 16 17 34
9999 3 16 29 28 17
9999 3 31 22 9 19
9999 3 19 9 25 33
9999 3 13 31 19 1
9999 3 28 13 1 15
9999 3 1 19 33 15
9999 3 27 34 21 11
9999 3 33 25 11 21
9999 3 34 17 3 21
9999 3 17 28 15 3
9999 3 15 33 21 3
vertex_to_knotspan
8
23 0 1 8 10 11 9
22 0 2 8 10 11 9
24 1 0 8 10 11 9
36 1 1 8 10 11 9
37 1 2 8 10 11 9
25 1 3 8 10 11 9
26 2 1 8 10 11 9
27 2 2 8 10 11 9
coordinates
40
3
0 0 0
0 1 0
4 0 0
4 1 0
0 0 4
0 1 4
4 0 4
4 1 4
0 0 2
0 1 2
4 0 2
4 1 2
0 0.333333333333333 0
0 0.666666666666667 0
2 0 0
2 1 0
4 0.333333333333334 0
4 0.666666666666667 0
0 0 1
0 1 1
4 0 1
4 1 1
0 0.666666666666667 2
0 0.333333333333333 2
2 0 2
2 1 2
4 0.333333333333333 2
4 0.666666666666667 2
2 0.666666666666667 0
2 0.333333333333333 0
0 0.333333333333333 1
0 0.666666666666667 1
1.81325211007895 0 1
1.81325211007895 1 1
4 0.666666666666667 1
4 0.333333333333333 1
2 0.333333333333333 2
2 0.666666666666667 2
1.81325211007895 0.333333333333333 1
1.81325211007895 0.666666666666667 1
edges
87
0 8 10
1 10 11
0 9 11
1 8 9
0 4 6
1 6 7
0 5 7
1 4 5
2 4 8
2 6 10
2 7 11
2 5 9
9 18 8
7 8 24
9 32 24
7 18 32
9 30 23
7 23 36
9 38 36
7 30 38
3 18 30
3 8 23
3 24 36
3 32 38
8 0 18
8 14 32
7 0 14
8 12 30
8 29 38
7 12 29
3 0 12
3 14 29
6 24 10
9 20 10
6 32 20
6 36 26
9 35 26
6 38 35
3 10 26
3 20 35
8 2 20
6 14 2
8 16 35
6 29 16
3 2 16
9 31 22
7 22 37
9 39 37
7 31 39
4 30 31
4 23 22
4 36 37
4 38 39
8 13 31
8 28 39
7 13 28
4 12 13
4 29 28
6 37 27
9 34 27
6 39 34
4 26 27
4 35 34
8 17 34
6 28 17
4 16 17
9 19 9
7 9 25
9 33 25
7 19 33
5 31 19
5 22 9
5 37 25
5 39 33
8 1 19
8 15 33
7 1 15
5 13 1
5 28 15
6 25 11
9 21 11
6 33 21
5 27 11
5 34 21
8 3 21
6 15 3
5 17 3
knotvectors
10
1 3 0 0 0.5 1 1
1 4 0 0 0.333333333333333 0.666666666666667 1 1
1 3 0 0 0.5 1 1
1 2 0 0 1 1
1 2 0 0 1 1
1 2 0 0 1 1
1 2 0 0 1 1
1 2 0 0 1 1
1 2 0 0 1 1
1 2 0 0 1 1
spacing
0
weights
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
FiniteElementSpace
FiniteElementCollection: NURBS1
VDim: 3
Ordering: 1
0 0 0
0 1 0
4 0 0
4 1 0
0 0 4
0 1 4
4 0 4
4 1 4
0 0 2
0 1 2
4 0 2
4 1 2
0 0.333333333333333 0
0 0.666666666666667 0
2 0 0
2 1 0
4 0.333333333333334 0
4 0.666666666666667 0
0 0 1
0 1 1
4 0 1
4 1 1
0 0.666666666666667 2
0 0.333333333333333 2
2 0 2
2 1 2
4 0.333333333333333 2
4 0.666666666666667 2
2 0.666666666666667 0
2 0.333333333333333 0
0 0.333333333333333 1
0 0.666666666666667 1
1.81325211007895 0 1
1.81325211007895 1 1
4 0.666666666666667 1
4 0.333333333333333 1
2 0.333333333333333 2
2 0.666666666666667 2
1.81325211007895 0.333333333333333 1
1.81325211007895 0.666666666666667 1
2 0 4
4 0.333333333333333 4
4 0.666666666666667 4
2 1 4
0 0.333333333333333 4
0 0.666666666666667 4
0 0 3
4 0 3
4 1 3
0 1 3
2 0 3
4 0.333333333333333 3
4 0.666666666666667 3
2 1 3
0 0.666666666666667 3
0 0.333333333333333 3
2 0.333333333333333 4
2 0.666666666666667 4
2 0.333333333333333 3
2 0.666666666666667 3
-96
View File
@@ -1,96 +0,0 @@
MFEM NURBS NC-patch mesh v1.0
dimension
2
# rank attr geom ref_type nodes/children
elements
3
0 1 3 0 0 4 5 1
0 1 3 0 6 7 4 2
0 1 3 0 6 3 5 7
# attr geom nodes
boundary
7
1 1 0 4
1 1 5 1
1 1 1 0
1 1 2 6
1 1 6 3
1 1 4 2
1 1 5 3
vertex_to_knotspan
1
7 1 4 5
# top-level node coordinates
coordinates
8
2
0 0
0 1
2 0
2 1
1 0
1 1
2 0.5
1 0.5
edges
11
0 0 4
1 4 5
0 1 5
1 0 1
2 6 7
4 7 4
2 2 4
4 6 2
3 6 3
2 3 5
3 7 5
knotvectors
5
1 3 0 0 0.5 1 1
1 3 0 0 0.5 1 1
1 2 0 0 1 1
1 2 0 0 1 1
1 2 0 0 1 1
spacing
0
weights
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
FiniteElementSpace
FiniteElementCollection: NURBS1
VDim: 2
Ordering: 1
0 0
0 1
2 0
2 1
1 0
1 1
2 0.5
1 0.5
0.5 0
0.5 1
0 0.5
0.5 0.5
mfem_mesh_end
@@ -1,86 +0,0 @@
MFEM NURBS mesh v1.0
dimension
1
# Four segments with different NURBS orders, described via patches.
elements
4
1 1 0 1
2 1 2 3
3 1 4 5
4 1 6 7
boundary
0
edges
4
0 0 1
1 2 3
2 4 5
3 6 7
vertices
8
patches
# Patch 0: linear (order 1, 3 spans)
knotvectors
1
1 4 0 0 .4 .6 1 1
dimension
2
controlpoints
0.0 0.0 1.0
0.6 0.4 1.0
0.4 0.6 1.0
1.0 1.0 1.0
# Patch 1: quadratic (order 2, 2 spans)
knotvectors
1
2 4 0 0 0 .5 1 1 1
dimension
2
controlpoints
1.0 0.0 1.0
1.9 0.0 1.21
2.0 0.9 1.22
2.0 1.0 1.0
# Patch 2: cubic (order 3, 3 spans)
knotvectors
1
3 6 0 0 0 0 .33 .66 1 1 1 1
dimension
2
controlpoints
2.0 0.0 1.0
2.1 0.2 1.31
3.5 0.4 1.32
2.5 0.6 1.33
2.9 1.0 1.34
3.0 1.0 1.0
# Patch 3: quartic (order 4, 1 span)
knotvectors
1
4 5 0 0 0 0 0 1 1 1 1 1
dimension
2
controlpoints
3.0 0.0 1.0
3.45 0.5 1.41
3.50 1.0 1.42
3.75 0.8 1.43
4.0 0.0 1.0
-79
View File
@@ -1,79 +0,0 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
# Three segments with different NURBS orders, described via patches.
elements
3
1 1 0 1
2 1 2 3
3 1 4 5
boundary
6
1 0 0
1 0 1
1 0 2
1 0 3
1 0 4
1 0 5
edges
3
0 0 1
1 2 3
2 4 5
vertices
6
patches
# Patch 0: linear (order 1, 2 control points)
knotvectors
1
1 2 0 0 1 1
dimension
2
controlpoints
0.0 0.0 1.0
1.0 1.0 1.0
# Patch 1: quadratic (order 2, 3 control points)
knotvectors
1
2 3 0 0 0 1 1 1
dimension
2
controlpoints
1.0 0.0 1.0
1.02 1.02 1.2
2.0 1.0 1.0
# Patch 2: cubic (order 3, 4 control points)
knotvectors
1
3 4 0 0 0 0 1 1 1 1
dimension
2
controlpoints
2.0 0.0 1.0
2.03 0.83 1.31
2.33 1.03 1.32
3.0 1.0 1.0
-72
View File
@@ -1,72 +0,0 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
elements
3
1 1 0 1
2 1 2 3
3 1 4 5
boundary
6
1 0 0
1 0 1
1 0 2
1 0 3
1 0 4
1 0 5
edges
3
0 0 1
1 2 3
2 4 5
vertices
6
# Edge 0: linear (order 1, 2 control points)
# Edge 1: quadratic (order 2, 3 control points)
# Edge 2: cubic (order 3, 4 control points)
knotvectors
3
1 2 0 0 1 1
2 3 0 0 0 1 1 1
3 4 0 0 0 0 1 1 1 1
# One weight per control point, in the same order as the control points; (2 + 3 + 4) = 9 weights total
weights
1
1
1
1
1
1
1.2
1.31
1.32
FiniteElementSpace
FiniteElementCollection: NURBS
VDim: 2
Ordering: 1
0.0 0.0
1.0 1.0
1.0 0.0
2.0 1.0
2.0 0.0
3.0 1.0
1.02 1.02
2.03 0.83
2.33 1.03
-79
View File
@@ -1,79 +0,0 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
# Three segments with different NURBS orders, described via patches.
elements
3
1 1 0 1
2 1 2 3
3 1 4 5
boundary
6
1 0 0
1 0 1
1 0 2
1 0 3
1 0 4
1 0 5
edges
3
0 0 1
1 2 3
2 4 5
vertices
6
patches
# Patch 0: linear (order 1, 2 control points)
knotvectors
1
1 2 0 0 1 1
dimension
3
controlpoints
0.0 0.0 0.01 1.0
1.0 1.0 1.01 1.0
# Patch 1: quadratic (order 2, 3 control points)
knotvectors
1
2 3 0 0 0 1 1 1
dimension
3
controlpoints
1.0 0.0 0.02 1.0
1.02 1.02 0.52 1.2
2.0 1.0 1.02 1.0
# Patch 2: cubic (order 3, 4 control points)
knotvectors
1
3 4 0 0 0 0 1 1 1 1
dimension
3
controlpoints
2.0 0.0 0.03 1.0
2.03 0.83 0.33 1.31
2.33 1.03 0.63 1.32
3.0 1.0 1.03 1.0
-72
View File
@@ -1,72 +0,0 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
1
elements
3
1 1 0 1
2 1 2 3
3 1 4 5
boundary
6
1 0 0
1 0 1
1 0 2
1 0 3
1 0 4
1 0 5
edges
3
0 0 1
1 2 3
2 4 5
vertices
6
# Edge 0: linear (order 1, 2 control points)
# Edge 1: quadratic (order 2, 3 control points)
# Edge 2: cubic (order 3, 4 control points)
knotvectors
3
1 2 0 0 1 1
2 3 0 0 0 1 1 1
3 4 0 0 0 0 1 1 1 1
# One weight per control point, in the same order as the control points; (2 + 3 + 4) = 9 weights total
weights
1
1
1
1
1
1
1.2
1.31
1.32
FiniteElementSpace
FiniteElementCollection: NURBS
VDim: 3
Ordering: 1
0.0 0.0 0.01
1.0 1.0 1.01
1.0 0.0 0.02
2.0 1.0 1.02
2.0 0.0 0.03
3.0 1.0 1.03
1.02 1.02 0.52
2.03 0.83 0.33
2.33 1.03 0.63
+2 -4
View File
@@ -48,7 +48,7 @@ PROJECT_NAME = MFEM
# could be handy for archiving the generated documentation or if some version
# control system is used.
PROJECT_NUMBER = v4.9.1
PROJECT_NUMBER = v4.8.1
# Using the PROJECT_BRIEF tag one can provide an optional one line description
# for a project that appears at the top of each page and should give viewer a
@@ -973,13 +973,10 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
@MFEM_SOURCE_DIR@/miniapps/adjoint \
@MFEM_SOURCE_DIR@/miniapps/autodiff \
@MFEM_SOURCE_DIR@/miniapps/common \
@MFEM_SOURCE_DIR@/miniapps/contact \
@MFEM_SOURCE_DIR@/miniapps/dfem \
@MFEM_SOURCE_DIR@/miniapps/dpg \
@MFEM_SOURCE_DIR@/miniapps/dpg/util \
@MFEM_SOURCE_DIR@/miniapps/electromagnetics \
@MFEM_SOURCE_DIR@/miniapps/fluids/navier \
@MFEM_SOURCE_DIR@/miniapps/fluids/schrodinger-flow \
@MFEM_SOURCE_DIR@/miniapps/gslib \
@MFEM_SOURCE_DIR@/miniapps/hdiv-linear-solver \
@MFEM_SOURCE_DIR@/miniapps/hooke \
@@ -990,6 +987,7 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
@MFEM_SOURCE_DIR@/miniapps/meshing \
@MFEM_SOURCE_DIR@/miniapps/mtop \
@MFEM_SOURCE_DIR@/miniapps/multidomain \
@MFEM_SOURCE_DIR@/miniapps/navier \
@MFEM_SOURCE_DIR@/miniapps/nurbs \
@MFEM_SOURCE_DIR@/miniapps/parelag \
@MFEM_SOURCE_DIR@/miniapps/performance \
+1 -8
View File
@@ -117,8 +117,6 @@ namespace mfem {
* - <a class="el" href="ex39p_8cpp_source.html">Example 39p</a>: parallel named mesh attributes
* - <a class="el" href="ex40_8cpp_source.html">Example 40</a>: eikonal equation
* - <a class="el" href="ex40p_8cpp_source.html">Example 40p</a>: parallel eikonal equation
* - <a class="el" href="ex41_8cpp_source.html">Example 41</a>: DG/CG IMEX time-dependent advection-diffusion
* - <a class="el" href="ex41p_8cpp_source.html">Example 41p</a>: parallel DG/CG IMEX time-dependent advection-diffusion
*
* <H4>AmgX Examples</H4>
* - Variants of Examples
@@ -190,8 +188,6 @@ namespace mfem {
* <a class="el" href="nurbs__ex1p_8cpp_source.html">1p</a>,
* <a class="el" href="nurbs__ex3_8cpp_source.html">3</a>,
* <a class="el" href="nurbs__ex5_8cpp_source.html">5</a>,
* <a class="el" href="nurbs__ex10_8cpp_source.html">10</a>,
* <a class="el" href="nurbs__ex10p_8cpp_source.html">10p</a>,
* <a class="el" href="nurbs__ex11p_8cpp_source.html">11p</a>, and
* <a class="el" href="nurbs__ex24_8cpp_source.html">24</a>,
* demonstrating howto perform NURBS-based Isogeometric Analysis.
@@ -200,14 +196,12 @@ namespace mfem {
* - <a class="el" href="nurbs__curveint_8cpp_source.html">NURBS Interpolation</a>: NURBS interpolation of given geometry
* - <a class="el" href="nurbs__naca__cmesh_8cpp_source.html">NURBS NACA Mesher</a>: generate NURBS based mesh around a NACA foil
* - <a class="el" href="nurbs__printfunc_8cpp_source.html">NURBS Printer</a>: print the NURBS-basis
* - <a class="el" href="nurbs__mesh_info_8cpp_source.html">NURBS Mesh info</a>: print the info of a NURBS mesh
*
* <H3>Miniapps</H3>
* - <a class="el" href="volta_8cpp_source.html">Volta</a>: simple electrostatics simulation code
* - <a class="el" href="tesla_8cpp_source.html">Tesla</a>: simple magnetostatics simulation code
* - <a class="el" href="maxwell_8cpp_source.html">Maxwell</a>: simple transient full-wave electromagnetics simulation code
* - <a class="el" href="joule_8cpp_source.html">Joule</a>: transient magnetics and Joule heating miniapp
* - <a class="el" href="lorentz_8cpp_source.html">Lorentz</a>: simple particle tracking code based on the Lorentz force
* - <a class="el" href="classmfem_1_1navier_1_1NavierSolver.html">Navier</a>: solve the transient incompressible Navier-Stokes equations
* - <a class="el" href="mobius-strip_8cpp_source.html">Mobius Strip</a>: generate various Mobius strip-like meshes
* - <a class="el" href="klein-bottle_8cpp_source.html">Klein Bottle</a>: generate three types of Klein bottle surfaces
@@ -239,8 +233,7 @@ namespace mfem {
* - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Poisson problem
* - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Poisson problem
* - <a class="el" href="generate__random__field_8cpp_source.html">SPDE Solvers</a>: SPDE solver random field generation
* - <a class="el" href="contact-patch-test_8cpp_source.html">Tribol</a>: mortar contact patch test for elasticity
* - <a class="el" href="contact_8cpp_source.html">Contact</a>: Frictionless contact examples using <a class="el" href="classmfem_1_1IPSolver.html#details">IP optimization</a> and the <a class="el" href="classmfem_1_1AMGFSolver.html#details">AMGF solver</a>
* - <a class="el" href="contact-patch-test_8cpp_source.html">Contact</a>: mortar contact patch test for elasticity
* - <a class="el" href="multidomain_8cpp_source.html">Multidomain miniapp</a>: Multidomain and Submesh demonstration miniapp
* - <a class="el" href="pdiffusion_8cpp_source.html">DPG Diffusion example</a>: DPG formulation for the diffusion problem
* - <a class="el" href="pmaxwell_8cpp_source.html">DPG Maxwell example</a>: DPG formulation for the indefinite Maxwell problem
-13
View File
@@ -46,7 +46,6 @@ list(APPEND ALL_EXE_SRCS
ex38.cpp
ex39.cpp
ex40.cpp
ex41.cpp
)
if (MFEM_USE_MPI)
@@ -90,7 +89,6 @@ if (MFEM_USE_MPI)
ex37p.cpp
ex39p.cpp
ex40p.cpp
ex41p.cpp
)
endif()
@@ -133,8 +131,6 @@ if (MFEM_ENABLE_TESTING)
list(APPEND THIS_TEST_OPTIONS "-dg")
elseif(${TEST_NAME} MATCHES "ex37p*")
list(APPEND THIS_TEST_OPTIONS "-mi" "3")
elseif(${TEST_NAME} MATCHES "ex41p*")
list(APPEND THIS_TEST_OPTIONS "-tf" "1.0")
endif()
if (NOT (${TEST_NAME} MATCHES ".*p$"))
@@ -209,15 +205,6 @@ if (MFEM_ENABLE_TESTING)
$<TARGET_FILE:ex25p> "-no-vis" "--mumps-solver"
${MPIEXEC_POSTFLAGS})
endif()
# Parallel libCEED example
if (MFEM_USE_CEED AND MFEM_USE_MPI)
add_test(NAME ex1p_ceed_np=${MFEM_MPI_NP}
COMMAND ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${MFEM_MPI_NP}
${MPIEXEC_PREFLAGS}
$<TARGET_FILE:ex1p> "-no-vis" "-d" "ceed-cpu" "-pa" "-a"
${MPIEXEC_POSTFLAGS})
endif()
endif()
# Include the examples/amgx directory if AmgX is enabled
+1 -1
View File
@@ -64,7 +64,7 @@ PARALLEL_NAME := Parallel AMGX example
$(MFEM_LIB_FILE):
$(error The MFEM library is not build)
clean: clean-build clean-exec
clean: clean-build
clean-build:
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
+3 -3
View File
@@ -64,12 +64,12 @@ ex1p-test-par: ex1p
$(MFEM_LIB_FILE):
$(error The MFEM library is not built)
clean: clean-build clean-exec
clean: clean-build clean-exec $(SUBDIRS_CLEAN)
clean-build:
rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
rm -rf *.dSYM *.TVD.*breakpoints
clean-exec:
@rm -f refined.mesh mesh.*
@rm -f sol.*
@rm -f refined.mesh displaced.mesh mesh.* ex5.mesh
@rm -f sphere_refined.* sol.* sol_u.* sol_p.* sol_r.* sol_i.*
+21 -35
View File
@@ -27,7 +27,6 @@
// ex1 -m ../data/fichera-amr.mesh
// ex1 -m ../data/mobius-strip.mesh
// ex1 -m ../data/mobius-strip.mesh -o -1 -sc
// ex1 -m ../data/nc3-nurbs.mesh -o -1
//
// Device sample runs:
// ex1 -pa -d cuda
@@ -50,10 +49,6 @@
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cpu
// ex1 -m ../data/beam-tet.mesh -pa -d ceed-cuda:/gpu/cuda/ref
//
// Device simplices sample runs:
// ex1 -pa -d gpu -m ../data/inline-tet.mesh
// ex1 -pa -d gpu -m ../data/inline-tri.mesh
//
// Description: This example code demonstrates the use of MFEM to define a
// simple finite element discretization of the Poisson problem
// -Delta u = 1 with homogeneous Dirichlet boundary conditions.
@@ -142,25 +137,25 @@ int main(int argc, char *argv[])
}
// 5. Define a finite element space on the mesh. Here we use continuous
// Lagrange finite elements of the specified order.
// - If order < 1, we instead use an isoparametric/isogeometric space.
// - If the mesh is simplicial and partial assembly is requested,
// we use the positive basis, which supports device execution.
// Lagrange finite elements of the specified order. If order < 1, we
// instead use an isoparametric/isogeometric space.
FiniteElementCollection *fec;
auto basis_type = (pa && mesh.IsSimplexMesh()) ?
BasisType::Positive : BasisType::GaussLobatto;
bool delete_fec;
if (order > 0)
{
fec = new H1_FECollection(order, dim, basis_type);
fec = new H1_FECollection(order, dim);
delete_fec = true;
}
else if (mesh.GetNodes())
{
fec = mesh.GetNodes()->OwnFEC();
delete_fec = false;
cout << "Using isoparametric FEs: " << fec->Name() << endl;
}
else
{
fec = new H1_FECollection(order = 1, dim, basis_type);
fec = new H1_FECollection(order = 1, dim);
delete_fec = true;
}
FiniteElementSpace fespace(&mesh, fec);
cout << "Number of finite element unknowns: "
@@ -228,29 +223,17 @@ int main(int argc, char *argv[])
// 11. Solve the linear system A X = B.
if (!pa)
{
#ifdef MFEM_USE_CUDSS
if (Device::Allows(Backend::CUDA_MASK))
{
// Use cuDSS to solve the system.
CuDSSSolver cudss_solver;
cudss_solver.SetOperator(*A);
cudss_solver.Mult(B, X);
}
else
#endif
{
#ifndef MFEM_USE_SUITESPARSE
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
GSSmoother M((SparseMatrix&)(*A));
PCG(*A, M, B, X, 1, 200, 1e-12, 0.0);
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
GSSmoother M((SparseMatrix&)(*A));
PCG(*A, M, B, X, 1, 200, 1e-12, 0.0);
#else
// If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
UMFPackSolver umf_solver;
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
umf_solver.SetOperator(*A);
umf_solver.Mult(B, X);
// If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
UMFPackSolver umf_solver;
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
umf_solver.SetOperator(*A);
umf_solver.Mult(B, X);
#endif
}
}
else
{
@@ -289,14 +272,17 @@ int main(int argc, char *argv[])
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
int visport = 19916;
socketstream sol_sock(vishost, visport);
sol_sock.precision(8);
sol_sock << "solution\n" << mesh << x << flush;
}
// 15. Free the used memory.
if (order > 0) { delete fec; }
if (delete_fec)
{
delete fec;
}
return 0;
}
+2 -2
View File
@@ -5,9 +5,9 @@
// Sample runs:
// mpirun -np 4 ex12p -m ../data/beam-tri.mesh
// mpirun -np 4 ex12p -m ../data/beam-quad.mesh
// mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 464 -n 10 -o 2 -elast
// mpirun -np 4 ex12p -m ../data/beam-tet.mesh -s 462 -n 10 -o 2 -elast
// mpirun -np 4 ex12p -m ../data/beam-hex.mesh -s 3878
// mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 82
// mpirun -np 4 ex12p -m ../data/beam-wedge.mesh -s 81
// mpirun -np 4 ex12p -m ../data/beam-tri.mesh -s 3877 -o 2 -sys
// mpirun -np 4 ex12p -m ../data/beam-quad.mesh -s 4544 -n 6 -o 3 -elast
// mpirun -np 4 ex12p -m ../data/beam-quad-nurbs.mesh
+6 -29
View File
@@ -105,7 +105,6 @@ int main(int argc, char *argv[])
bool visualization = true;
bool visit = false;
int vis_steps = 5;
bool solve_implicit_state = false;
int precision = 8;
cout.precision(precision);
@@ -127,9 +126,6 @@ int main(int argc, char *argv[])
"Alpha coefficient.");
args.AddOption(&kappa, "-k", "--kappa",
"Kappa coefficient offset.");
args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
"-imp-slope", "--implicit-slope",
"Implicitly solve for stage state or slope.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
@@ -183,11 +179,6 @@ int main(int argc, char *argv[])
// 7. Initialize the conduction operator and the visualization.
ConductionOperator oper(fespace, alpha, kappa, u);
using ImplicitVariableType = ConductionOperator::ImplicitVariableType;
ImplicitVariableType imp_var = solve_implicit_state ?
ImplicitVariableType::STATE
: ImplicitVariableType::SLOPE;
oper.SetImplicitVariableType(imp_var);
u_gf.SetFromTrueDofs(u);
{
@@ -325,14 +316,11 @@ void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
}
void ConductionOperator::ImplicitSolve(const real_t dt,
const Vector &u, Vector &k)
const Vector &u, Vector &du_dt)
{
// Solve the equation:
// M*k = -K(u + dt*k) for k = du/dt, if solving for stage-slope
// or
// M*k = -dt*K(k) + M*u for k = u_s, if solving for stage-state
// where K is linearized by using u from the previous timestep, and
// the stage-state and slope relation: du/dt = (u_s - u)/dt.
// du_dt = M^{-1}*[-K(u + dt*du_dt)]
// for du_dt, where K is linearized by using u from the previous timestep
if (!T)
{
T = Add(1.0, Mmat, dt, Kmat);
@@ -340,20 +328,9 @@ void ConductionOperator::ImplicitSolve(const real_t dt,
T_solver.SetOperator(*T);
}
MFEM_VERIFY(dt == current_dt, ""); // SDIRK methods use the same dt
// Construct current right-hand side for stage state vs. slope solve
if (ImplicitVarTypeIsState())
{
// k, on return, is the stage value u_s
Mmat.Mult(u, z);
}
else
{
// k, on return, is the stage slope du/dt
Kmat.Mult(u, z);
z.Neg();
}
T_solver.Mult(z, k);
Kmat.Mult(u, z);
z.Neg();
T_solver.Mult(z, du_dt);
}
void ConductionOperator::SetParameters(const Vector &u)
+6 -29
View File
@@ -115,7 +115,6 @@ int main(int argc, char *argv[])
bool visit = false;
int vis_steps = 5;
bool adios2 = false;
bool solve_implicit_state = false;
int precision = 8;
cout.precision(precision);
@@ -139,9 +138,6 @@ int main(int argc, char *argv[])
"Alpha coefficient.");
args.AddOption(&kappa, "-k", "--kappa",
"Kappa coefficient offset.");
args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
"-imp-slope", "--implicit-slope",
"Implicitly solve for stage state or slope.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
@@ -216,11 +212,6 @@ int main(int argc, char *argv[])
// 9. Initialize the conduction operator and the VisIt visualization.
ConductionOperator oper(fespace, alpha, kappa, u);
using ImplicitVariableType = ConductionOperator::ImplicitVariableType;
ImplicitVariableType imp_var = solve_implicit_state ?
ImplicitVariableType::STATE
: ImplicitVariableType::SLOPE;
oper.SetImplicitVariableType(imp_var);
u_gf.SetFromTrueDofs(u);
{
@@ -416,14 +407,11 @@ void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
}
void ConductionOperator::ImplicitSolve(const real_t dt,
const Vector &u, Vector &k)
const Vector &u, Vector &du_dt)
{
// Solve the equation:
// M*k = -K(u + dt*k) for k = du/dt, if solving for stage-slope
// or
// M*k = -dt*K(k) + M*u for k = u_s, if solving for stage-state
// where K is linearized by using u from the previous timestep, and
// the stage-state and slope relation: du/dt = (u_s - u)/dt.
// du_dt = M^{-1}*[-K(u + dt*du_dt)]
// for du_dt, where K is linearized by using u from the previous timestep
if (!T)
{
T = Add(1.0, Mmat, dt, Kmat);
@@ -431,20 +419,9 @@ void ConductionOperator::ImplicitSolve(const real_t dt,
T_solver.SetOperator(*T);
}
MFEM_VERIFY(dt == current_dt, ""); // SDIRK methods use the same dt
// Construct current right-hand side for stage state vs. slope solve
if (ImplicitVarTypeIsState())
{
// k, on return, is the stage value u
Mmat.Mult(u, z);
}
else
{
// k, on return, is the stage slope du/dt
Kmat.Mult(u, z);
z.Neg();
}
T_solver.Mult(z, k);
Kmat.Mult(u, z);
z.Neg();
T_solver.Mult(z, du_dt);
}
void ConductionOperator::SetParameters(const Vector &u)
+34 -60
View File
@@ -42,11 +42,7 @@
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/square-mixed.mesh
// mpirun -np 4 ex1p -pa -d ceed-cuda:/gpu/cuda/shared -m ../data/fichera-mixed.mesh
// mpirun -np 4 ex1p -pa -d ceed-cpu -m ../data/beam-tet.mesh
//
// Device simplices sample runs:
// mpirun -np 4 ex1p -pa -d gpu -m ../data/inline-tet.mesh
// mpirun -np 4 ex1p -pa -d gpu -m ../data/inline-tri.mesh
// mpirun -np 4 ex1p -m ../data/beam-tet.mesh -pa -d ceed-cpu
//
// Description: This example code demonstrates the use of MFEM to define a
// simple finite element discretization of the Poisson problem
@@ -87,9 +83,6 @@ int main(int argc, char *argv[])
const char *device_config = "cpu";
bool visualization = true;
bool algebraic_ceed = false;
#ifdef MFEM_USE_CUDSS
bool cudss_solver = false;
#endif
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
@@ -109,10 +102,6 @@ int main(int argc, char *argv[])
args.AddOption(&algebraic_ceed, "-a", "--algebraic",
"-no-a", "--no-algebraic",
"Use algebraic Ceed solver");
#endif
#ifdef MFEM_USE_CUDSS
args.AddOption(&cudss_solver, "-cudss", "--cudss-solver", "-no-cudss",
"--no-cudss-solver", "Use the cuDSS Solver.");
#endif
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
@@ -169,20 +158,19 @@ int main(int argc, char *argv[])
}
// 7. Define a parallel finite element space on the parallel mesh. Here we
// use continuous Lagrange finite elements of the specified order.
// - If order < 1, we instead use an isoparametric/isogeometric space.
// - If the mesh is simplicial and partial assembly is requested,
// we use the positive basis, which supports device execution.
// use continuous Lagrange finite elements of the specified order. If
// order < 1, we instead use an isoparametric/isogeometric space.
FiniteElementCollection *fec;
auto basis_type = (pa && pmesh.IsSimplexMesh()) ?
BasisType::Positive : BasisType::GaussLobatto;
bool delete_fec;
if (order > 0)
{
fec = new H1_FECollection(order, dim, basis_type);
fec = new H1_FECollection(order, dim);
delete_fec = true;
}
else if (pmesh.GetNodes())
{
fec = pmesh.GetNodes()->OwnFEC();
delete_fec = false;
if (myid == 0)
{
cout << "Using isoparametric FEs: " << fec->Name() << endl;
@@ -190,7 +178,8 @@ int main(int argc, char *argv[])
}
else
{
fec = new H1_FECollection(order = 1, dim, basis_type);
fec = new H1_FECollection(order = 1, dim);
delete_fec = true;
}
ParFiniteElementSpace fespace(&pmesh, fec);
HYPRE_BigInt size = fespace.GlobalTrueVSize();
@@ -259,51 +248,33 @@ int main(int argc, char *argv[])
// 13. Solve the linear system A X = B.
// * With full assembly, use the BoomerAMG preconditioner from hypre.
// * With partial assembly, use Jacobi smoothing, for now.
#ifdef MFEM_USE_CUDSS
if (!pa && (Device::Allows(Backend::CUDA_MASK) && cudss_solver))
Solver *prec = NULL;
if (pa)
{
// Solve using a direct solver with cuDSS
CuDSSSolver cudss_solver(MPI_COMM_WORLD);
cudss_solver.SetMatrixSymType(
CuDSSSolver::SYMMETRIC_POSITIVE_DEFINITE);
cudss_solver.SetMatrixViewType(CuDSSSolver::UPPER);
cudss_solver.SetOperator(*A);
cudss_solver.Mult(B, X);
}
else
#endif
{
Solver *prec = NULL;
if (pa)
if (UsesTensorBasis(fespace))
{
if (UsesTensorBasis(fespace))
if (algebraic_ceed)
{
if (algebraic_ceed)
{
prec = new ceed::AlgebraicSolver(a, ess_tdof_list);
}
else
{
prec = new OperatorJacobiSmoother(a, ess_tdof_list);
}
prec = new ceed::AlgebraicSolver(a, ess_tdof_list);
}
else
{
prec = new OperatorJacobiSmoother(a, ess_tdof_list);
}
}
else
{
prec = new HypreBoomerAMG;
}
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(1);
if (prec)
{
cg.SetPreconditioner(*prec);
}
cg.SetOperator(*A);
cg.Mult(B, X);
delete prec;
}
else
{
prec = new HypreBoomerAMG;
}
CGSolver cg(MPI_COMM_WORLD);
cg.SetRelTol(1e-12);
cg.SetMaxIter(2000);
cg.SetPrintLevel(1);
if (prec) { cg.SetPreconditioner(*prec); }
cg.SetOperator(*A);
cg.Mult(B, X);
delete prec;
// 14. Recover the parallel grid function corresponding to X. This is the
// local finite element solution on each processor.
@@ -337,7 +308,10 @@ int main(int argc, char *argv[])
}
// 17. Free the used memory.
if (order > 0) { delete fec; }
if (delete_fec)
{
delete fec;
}
return 0;
}
+1 -1
View File
@@ -119,7 +119,7 @@ int main(int argc, char *argv[])
}
LinearForm b(&fespace);
b.AddBoundaryIntegrator(new VectorBoundaryLFIntegrator(f));
b.AddDomainIntegrator(new VectorBoundaryLFIntegrator(f));
// 6. Set up the bilinear form a(.,.) on the finite element space
// corresponding to the linear elasticity integrator with piece-wise
+1 -1
View File
@@ -140,7 +140,7 @@ int main(int argc, char *argv[])
}
ParLinearForm b(&fespace);
b.AddBoundaryIntegrator(new VectorBoundaryLFIntegrator(f));
b.AddDomainIntegrator(new VectorBoundaryLFIntegrator(f));
// 6. Set up the bilinear form a(.,.) on the finite element space
// corresponding to the linear elasticity integrator with piece-wise
+35 -79
View File
@@ -62,14 +62,9 @@ static real_t epsilon_ = 1.0;
static real_t sigma_ = 20.0;
static real_t omega_ = 10.0;
real_t u0_real_exact(const Vector &);
real_t u0_imag_exact(const Vector &);
void u1_real_exact(const Vector &, Vector &);
void u1_imag_exact(const Vector &, Vector &);
void u2_real_exact(const Vector &, Vector &);
void u2_imag_exact(const Vector &, Vector &);
complex<real_t> u0_exact(const Vector &x);
void u1_exact(const Vector &, ComplexVector &);
void u2_exact(const Vector &, ComplexVector &);
bool check_for_inline_mesh(const char * mesh_file);
@@ -215,54 +210,48 @@ int main(int argc, char *argv[])
ComplexGridFunction * u_exact = NULL;
if (exact_sol) { u_exact = new ComplexGridFunction(fespace); }
FunctionCoefficient u0_r(u0_real_exact);
FunctionCoefficient u0_i(u0_imag_exact);
VectorFunctionCoefficient u1_r(dim, u1_real_exact);
VectorFunctionCoefficient u1_i(dim, u1_imag_exact);
VectorFunctionCoefficient u2_r(dim, u2_real_exact);
VectorFunctionCoefficient u2_i(dim, u2_imag_exact);
ComplexFunctionCoefficient u0(u0_exact);
ComplexVectorFunctionCoefficient u1(dim, u1_exact);
ComplexVectorFunctionCoefficient u2(dim, u2_exact);
ConstantCoefficient zeroCoef(0.0);
ConstantCoefficient oneCoef(1.0);
ComplexConstantCoefficient oneCoef(1.0);
Vector zeroVec(dim); zeroVec = 0.0;
Vector oneVec(dim); oneVec = 0.0; oneVec[(prob==2)?(dim-1):0] = 1.0;
VectorConstantCoefficient zeroVecCoef(zeroVec);
VectorConstantCoefficient oneVecCoef(oneVec);
ComplexVectorConstantCoefficient oneVecCoef(oneVec);
switch (prob)
{
case 0:
if (exact_sol)
{
u.ProjectBdrCoefficient(u0_r, u0_i, ess_bdr);
u_exact->ProjectCoefficient(u0_r, u0_i);
u.ProjectBdrCoefficient(u0, ess_bdr);
u_exact->ProjectCoefficient(u0);
}
else
{
u.ProjectBdrCoefficient(oneCoef, zeroCoef, ess_bdr);
u.ProjectBdrCoefficient(oneCoef, ess_bdr);
}
break;
case 1:
if (exact_sol)
{
u.ProjectBdrCoefficientTangent(u1_r, u1_i, ess_bdr);
u_exact->ProjectCoefficient(u1_r, u1_i);
u.ProjectBdrCoefficientTangent(u1, ess_bdr);
u_exact->ProjectCoefficient(u1);
}
else
{
u.ProjectBdrCoefficientTangent(oneVecCoef, zeroVecCoef, ess_bdr);
u.ProjectBdrCoefficientTangent(oneVecCoef, ess_bdr);
}
break;
case 2:
if (exact_sol)
{
u.ProjectBdrCoefficientNormal(u2_r, u2_i, ess_bdr);
u_exact->ProjectCoefficient(u2_r, u2_i);
u.ProjectBdrCoefficientNormal(u2, ess_bdr);
u_exact->ProjectCoefficient(u2);
}
else
{
u.ProjectBdrCoefficientNormal(oneVecCoef, zeroVecCoef, ess_bdr);
u.ProjectBdrCoefficientNormal(oneVecCoef, ess_bdr);
}
break;
default: break; // This should be unreachable
@@ -300,27 +289,24 @@ int main(int argc, char *argv[])
ConstantCoefficient lossCoef(omega_ * sigma_);
ConstantCoefficient negMassCoef(omega_ * omega_ * epsilon_);
ComplexConstantCoefficient complexMassCoef(-omega_ * omega_ * epsilon_,
omega_ * sigma_);
SesquilinearForm *a = new SesquilinearForm(fespace, conv);
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
switch (prob)
{
case 0:
a->AddDomainIntegrator(new DiffusionIntegrator(stiffnessCoef),
NULL);
a->AddDomainIntegrator(new MassIntegrator(massCoef),
new MassIntegrator(lossCoef));
a->AddDomainIntegrator<DiffusionIntegrator>(stiffnessCoef);
a->AddDomainIntegrator<MassIntegrator>(complexMassCoef);
break;
case 1:
a->AddDomainIntegrator(new CurlCurlIntegrator(stiffnessCoef),
NULL);
a->AddDomainIntegrator(new VectorFEMassIntegrator(massCoef),
new VectorFEMassIntegrator(lossCoef));
a->AddDomainIntegrator<CurlCurlIntegrator>(stiffnessCoef);
a->AddDomainIntegrator<VectorFEMassIntegrator>(complexMassCoef);
break;
case 2:
a->AddDomainIntegrator(new DivDivIntegrator(stiffnessCoef),
NULL);
a->AddDomainIntegrator(new VectorFEMassIntegrator(massCoef),
new VectorFEMassIntegrator(lossCoef));
a->AddDomainIntegrator<DivDivIntegrator>(stiffnessCoef);
a->AddDomainIntegrator<VectorFEMassIntegrator>(complexMassCoef);
break;
default: break; // This should be unreachable
}
@@ -436,29 +422,24 @@ int main(int argc, char *argv[])
if (exact_sol)
{
real_t err_r = -1.0;
real_t err_i = -1.0;
real_t err_u = -1.0;
switch (prob)
{
case 0:
err_r = u.real().ComputeL2Error(u0_r);
err_i = u.imag().ComputeL2Error(u0_i);
err_u = u.ComputeL2Error(u0);
break;
case 1:
err_r = u.real().ComputeL2Error(u1_r);
err_i = u.imag().ComputeL2Error(u1_i);
err_u = u.ComputeL2Error(u1);
break;
case 2:
err_r = u.real().ComputeL2Error(u2_r);
err_i = u.imag().ComputeL2Error(u2_i);
err_u = u.ComputeL2Error(u2);
break;
default: break; // This should be unreachable
}
cout << endl;
cout << "|| Re (u_h - u) ||_{L^2} = " << err_r << endl;
cout << "|| Im (u_h - u) ||_{L^2} = " << err_i << endl;
cout << "|| u_h - u ||_{L^2} = " << err_u << endl;
cout << endl;
}
@@ -471,13 +452,10 @@ int main(int argc, char *argv[])
ofstream sol_r_ofs("sol_r.gf");
ofstream sol_i_ofs("sol_i.gf");
ofstream sol_z_ofs("sol_z.gf");
sol_r_ofs.precision(8);
sol_i_ofs.precision(8);
sol_z_ofs.precision(8);
u.real().Save(sol_r_ofs);
u.imag().Save(sol_i_ofs);
u.Save(sol_z_ofs);
}
// 14. Send the solution by socket to a GLVis server.
@@ -567,36 +545,14 @@ complex<real_t> u0_exact(const Vector &x)
return std::exp(-i * kappa * x[dim - 1]);
}
real_t u0_real_exact(const Vector &x)
{
return u0_exact(x).real();
}
real_t u0_imag_exact(const Vector &x)
{
return u0_exact(x).imag();
}
void u1_real_exact(const Vector &x, Vector &v)
void u1_exact(const Vector &x, ComplexVector &v)
{
int dim = x.Size();
v.SetSize(dim); v = 0.0; v[0] = u0_real_exact(x);
v.SetSize(dim); v = 0.0; v[0] = u0_exact(x);
}
void u1_imag_exact(const Vector &x, Vector &v)
void u2_exact(const Vector &x, ComplexVector &v)
{
int dim = x.Size();
v.SetSize(dim); v = 0.0; v[0] = u0_imag_exact(x);
}
void u2_real_exact(const Vector &x, Vector &v)
{
int dim = x.Size();
v.SetSize(dim); v = 0.0; v[dim-1] = u0_real_exact(x);
}
void u2_imag_exact(const Vector &x, Vector &v)
{
int dim = x.Size();
v.SetSize(dim); v = 0.0; v[dim-1] = u0_imag_exact(x);
v.SetSize(dim); v = 0.0; v[dim-1] = u0_exact(x);
}
+60 -65
View File
@@ -62,6 +62,10 @@ static real_t epsilon_ = 1.0;
static real_t sigma_ = 20.0;
static real_t omega_ = 10.0;
complex<real_t> u0_exact(const Vector &x);
void u1_exact(const Vector &, ComplexVector &);
void u2_exact(const Vector &, ComplexVector &);
real_t u0_real_exact(const Vector &);
real_t u0_imag_exact(const Vector &);
@@ -244,13 +248,22 @@ int main(int argc, char *argv[])
ParComplexGridFunction * u_exact = NULL;
if (exact_sol) { u_exact = new ParComplexGridFunction(fespace); }
ComplexFunctionCoefficient u0(u0_exact);
ComplexVectorFunctionCoefficient u1(dim, u1_exact);
ComplexVectorFunctionCoefficient u2(dim, u2_exact);
ComplexConstantCoefficient oneCoef(1.0);
Vector oneVec(dim); oneVec = 0.0; oneVec[(prob==2)?(dim-1):0] = 1.0;
ComplexVectorConstantCoefficient oneVecCoef(oneVec);
FunctionCoefficient u0_r(u0_real_exact);
FunctionCoefficient u0_i(u0_imag_exact);
VectorFunctionCoefficient u1_r(dim, u1_real_exact);
VectorFunctionCoefficient u1_i(dim, u1_imag_exact);
VectorFunctionCoefficient u2_r(dim, u2_real_exact);
VectorFunctionCoefficient u2_i(dim, u2_imag_exact);
/*
ConstantCoefficient zeroCoef(0.0);
ConstantCoefficient oneCoef(1.0);
@@ -258,40 +271,40 @@ int main(int argc, char *argv[])
Vector oneVec(dim); oneVec = 0.0; oneVec[(prob==2)?(dim-1):0] = 1.0;
VectorConstantCoefficient zeroVecCoef(zeroVec);
VectorConstantCoefficient oneVecCoef(oneVec);
*/
switch (prob)
{
case 0:
if (exact_sol)
{
u.ProjectBdrCoefficient(u0_r, u0_i, ess_bdr);
u_exact->ProjectCoefficient(u0_r, u0_i);
u.ProjectBdrCoefficient(u0, ess_bdr);
u_exact->ProjectCoefficient(u0);
}
else
{
u.ProjectBdrCoefficient(oneCoef, zeroCoef, ess_bdr);
u.ProjectBdrCoefficient(oneCoef, ess_bdr);
}
break;
case 1:
if (exact_sol)
{
u.ProjectBdrCoefficientTangent(u1_r, u1_i, ess_bdr);
u_exact->ProjectCoefficient(u1_r, u1_i);
u.ProjectBdrCoefficientTangent(u1, ess_bdr);
u_exact->ProjectCoefficient(u1);
}
else
{
u.ProjectBdrCoefficientTangent(oneVecCoef, zeroVecCoef, ess_bdr);
u.ProjectBdrCoefficientTangent(oneVecCoef, ess_bdr);
}
break;
case 2:
if (exact_sol)
{
u.ProjectBdrCoefficientNormal(u2_r, u2_i, ess_bdr);
u_exact->ProjectCoefficient(u2_r, u2_i);
u.ProjectBdrCoefficientNormal(u2, ess_bdr);
u_exact->ProjectCoefficient(u2);
}
else
{
u.ProjectBdrCoefficientNormal(oneVecCoef, zeroVecCoef, ess_bdr);
u.ProjectBdrCoefficientNormal(oneVecCoef, ess_bdr);
}
break;
default: break; // This should be unreachable
@@ -302,21 +315,15 @@ int main(int argc, char *argv[])
char vishost[] = "localhost";
int visport = 19916;
socketstream sol_sock_r(vishost, visport);
socketstream sol_sock_i(vishost, visport);
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
sol_sock_r.precision(8);
sol_sock_i.precision(8);
sol_sock_r << "solution\n" << *pmesh << u_exact->real()
<< "window_title 'Exact: Real Part'" << flush;
// Make sure all ranks have sent their real solution before initiating
// another set of GLVis connections (one from each rank):
MPI_Barrier(pmesh->GetComm());
socketstream sol_sock_i(vishost, visport);
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
sol_sock_i.precision(8);
sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
<< "window_title 'Exact: Imaginary Part'" << flush;
// Make sure all ranks have sent their imaginary solution before initiating
// another set of GLVis connections (one from each rank):
MPI_Barrier(pmesh->GetComm());
}
// 11. Set up the parallel sesquilinear form a(.,.) on the finite element
@@ -337,27 +344,24 @@ int main(int argc, char *argv[])
ConstantCoefficient lossCoef(omega_ * sigma_);
ConstantCoefficient negMassCoef(omega_ * omega_ * epsilon_);
ComplexConstantCoefficient complexMassCoef(-omega_ * omega_ * epsilon_,
omega_ * sigma_);
ParSesquilinearForm *a = new ParSesquilinearForm(fespace, conv);
if (pa) { a->SetAssemblyLevel(AssemblyLevel::PARTIAL); }
switch (prob)
{
case 0:
a->AddDomainIntegrator(new DiffusionIntegrator(stiffnessCoef),
NULL);
a->AddDomainIntegrator(new MassIntegrator(massCoef),
new MassIntegrator(lossCoef));
a->AddDomainIntegrator<DiffusionIntegrator>(stiffnessCoef);
a->AddDomainIntegrator<MassIntegrator>(complexMassCoef);
break;
case 1:
a->AddDomainIntegrator(new CurlCurlIntegrator(stiffnessCoef),
NULL);
a->AddDomainIntegrator(new VectorFEMassIntegrator(massCoef),
new VectorFEMassIntegrator(lossCoef));
a->AddDomainIntegrator<CurlCurlIntegrator>(stiffnessCoef);
a->AddDomainIntegrator<VectorFEMassIntegrator>(complexMassCoef);
break;
case 2:
a->AddDomainIntegrator(new DivDivIntegrator(stiffnessCoef),
NULL);
a->AddDomainIntegrator(new VectorFEMassIntegrator(massCoef),
new VectorFEMassIntegrator(lossCoef));
a->AddDomainIntegrator<DivDivIntegrator>(stiffnessCoef);
a->AddDomainIntegrator<VectorFEMassIntegrator>(complexMassCoef);
break;
default: break; // This should be unreachable
}
@@ -481,22 +485,18 @@ int main(int argc, char *argv[])
if (exact_sol)
{
real_t err_r = -1.0;
real_t err_i = -1.0;
real_t err_u = -1.0;
switch (prob)
{
case 0:
err_r = u.real().ComputeL2Error(u0_r);
err_i = u.imag().ComputeL2Error(u0_i);
err_u = u.ComputeL2Error(u0);
break;
case 1:
err_r = u.real().ComputeL2Error(u1_r);
err_i = u.imag().ComputeL2Error(u1_i);
err_u = u.ComputeL2Error(u1);
break;
case 2:
err_r = u.real().ComputeL2Error(u2_r);
err_i = u.imag().ComputeL2Error(u2_i);
err_u = u.ComputeL2Error(u2);
break;
default: break; // This should be unreachable
}
@@ -504,8 +504,7 @@ int main(int argc, char *argv[])
if ( myid == 0 )
{
cout << endl;
cout << "|| Re (u_h - u) ||_{L^2} = " << err_r << endl;
cout << "|| Im (u_h - u) ||_{L^2} = " << err_i << endl;
cout << "|| u_h - u ||_{L^2} = " << err_u << endl;
cout << endl;
}
}
@@ -513,11 +512,10 @@ int main(int argc, char *argv[])
// 15. Save the refined mesh and the solution in parallel. This output can be
// viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
{
ostringstream mesh_name, sol_r_name, sol_i_name, sol_z_name;
ostringstream mesh_name, sol_r_name, sol_i_name;
mesh_name << "mesh." << setfill('0') << setw(6) << myid;
sol_r_name << "sol_r." << setfill('0') << setw(6) << myid;
sol_i_name << "sol_i." << setfill('0') << setw(6) << myid;
sol_z_name << "sol_z." << setfill('0') << setw(6) << myid;
ofstream mesh_ofs(mesh_name.str().c_str());
mesh_ofs.precision(8);
@@ -525,13 +523,10 @@ int main(int argc, char *argv[])
ofstream sol_r_ofs(sol_r_name.str().c_str());
ofstream sol_i_ofs(sol_i_name.str().c_str());
ofstream sol_z_ofs(sol_z_name.str().c_str());
sol_r_ofs.precision(8);
sol_i_ofs.precision(8);
sol_z_ofs.precision(8);
u.real().Save(sol_r_ofs);
u.imag().Save(sol_i_ofs);
u.Save(sol_z_ofs);
}
// 16. Send the solution by socket to a GLVis server.
@@ -540,21 +535,15 @@ int main(int argc, char *argv[])
char vishost[] = "localhost";
int visport = 19916;
socketstream sol_sock_r(vishost, visport);
socketstream sol_sock_i(vishost, visport);
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
sol_sock_r.precision(8);
sol_sock_i.precision(8);
sol_sock_r << "solution\n" << *pmesh << u.real()
<< "window_title 'Solution: Real Part'" << flush;
// Make sure all ranks have sent their real solution before initiating
// another set of GLVis connections (one from each rank):
MPI_Barrier(pmesh->GetComm());
socketstream sol_sock_i(vishost, visport);
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
sol_sock_i.precision(8);
sol_sock_i << "solution\n" << *pmesh << u.imag()
<< "window_title 'Solution: Imaginary Part'" << flush;
// Make sure all ranks have sent their imaginary solution before initiating
// another set of GLVis connections (one from each rank):
MPI_Barrier(pmesh->GetComm());
}
if (visualization && exact_sol)
{
@@ -563,21 +552,15 @@ int main(int argc, char *argv[])
char vishost[] = "localhost";
int visport = 19916;
socketstream sol_sock_r(vishost, visport);
socketstream sol_sock_i(vishost, visport);
sol_sock_r << "parallel " << num_procs << " " << myid << "\n";
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
sol_sock_r.precision(8);
sol_sock_i.precision(8);
sol_sock_r << "solution\n" << *pmesh << u_exact->real()
<< "window_title 'Error: Real Part'" << flush;
// Make sure all ranks have sent their real solution before initiating
// another set of GLVis connections (one from each rank):
MPI_Barrier(pmesh->GetComm());
socketstream sol_sock_i(vishost, visport);
sol_sock_i << "parallel " << num_procs << " " << myid << "\n";
sol_sock_i.precision(8);
sol_sock_i << "solution\n" << *pmesh << u_exact->imag()
<< "window_title 'Error: Imaginary Part'" << flush;
// Make sure all ranks have sent their imaginary solution before initiating
// another set of GLVis connections (one from each rank):
MPI_Barrier(pmesh->GetComm());
}
if (visualization)
{
@@ -649,6 +632,12 @@ real_t u0_imag_exact(const Vector &x)
return u0_exact(x).imag();
}
void u1_exact(const Vector &x, ComplexVector &v)
{
int dim = x.Size();
v.SetSize(dim); v = 0.0; v[0] = u0_exact(x);
}
void u1_real_exact(const Vector &x, Vector &v)
{
int dim = x.Size();
@@ -661,6 +650,12 @@ void u1_imag_exact(const Vector &x, Vector &v)
v.SetSize(dim); v = 0.0; v[0] = u0_imag_exact(x);
}
void u2_exact(const Vector &x, ComplexVector &v)
{
int dim = x.Size();
v.SetSize(dim); v = 0.0; v[dim-1] = u0_exact(x);
}
void u2_real_exact(const Vector &x, Vector &v)
{
int dim = x.Size();
-9
View File
@@ -95,15 +95,6 @@ int main(int argc, char *argv[])
args.PrintOptions(cout);
}
if (amg_elast && !static_cond && reorder_space)
{
if (myid == 0)
cerr << "\nThe AMG elasticity solver requires ordering byVDIM! "
<< "Ignoring the specified option -nodes/--by-nodes.\n"
<< endl;
reorder_space = false;
}
// 3. Enable hardware devices such as GPUs, and programming models such as
// CUDA, OCCA, RAJA and OpenMP based on command line options.
Device device(device_config);
+52 -11
View File
@@ -5,8 +5,8 @@
// Sample runs:
// ex37 -alpha 10
// ex37 -alpha 10 -pv
// ex37 -lambda 0.1 -mu 0.1 -growth 1
// ex37 -o 2 -alpha 10.0 -mi 50 -vf 0.4 -ntol 1e-5 -growth 1.5
// ex37 -lambda 0.1 -mu 0.1
// ex37 -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
// ex37 -r 6 -o 1 -alpha 25.0 -epsilon 0.02 -mi 50 -ntol 1e-5
//
// Description: This example code demonstrates the use of MFEM to solve a
@@ -55,6 +55,53 @@
using namespace std;
using namespace mfem;
/**
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
* ∫_Ω ρ dx = θ vol(Ω) as follows:
*
* 1. Compute the root of the R → R function
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
* 2. Set ψ ← ψ + c.
*
* @param psi a GridFunction to be updated
* @param target_volume θ vol(Ω)
* @param tol Newton iteration tolerance
* @param max_its Newton maximum iteration number
* @return real_t Final volume, ∫_Ω sigmoid(ψ)
*/
real_t proj(GridFunction &psi, real_t target_volume, real_t tol=1e-12,
int max_its=10)
{
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
LinearForm int_sigmoid_psi(psi.FESpace());
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
LinearForm int_der_sigmoid_psi(psi.FESpace());
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
der_sigmoid_psi));
bool done = false;
for (int k=0; k<max_its; k++) // Newton iteration
{
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
const real_t f = int_sigmoid_psi.Sum() - target_volume;
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
const real_t df = int_der_sigmoid_psi.Sum();
const real_t dc = -f/df;
psi += dc;
if (abs(dc) < tol) { done = true; break; }
}
if (!done)
{
mfem_warning("Projection reached maximum iteration without converging. "
"Result may not be accurate.");
}
int_sigmoid_psi.Assemble();
return int_sigmoid_psi.Sum();
}
/*
* ---------------------------------------------------------------
* ALGORITHM PREAMBLE
@@ -133,11 +180,10 @@ int main(int argc, char *argv[])
int ref_levels = 5;
int order = 2;
real_t alpha = 1.0;
real_t growth = 2;
real_t epsilon = 0.01;
real_t vol_fraction = 0.5;
int max_it = 1e3;
real_t itol = 1e-2;
real_t itol = 1e-1;
real_t ntol = 1e-4;
real_t rho_min = 1e-6;
real_t lambda = 1.0;
@@ -152,8 +198,6 @@ int main(int argc, char *argv[])
"Order (degree) of the finite elements.");
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
"Step length for gradient descent.");
args.AddOption(&growth, "-growth", "--alpha-growth-rate",
"Growth rate of step length for gradient descent.");
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
"Length scale for ρ.");
args.AddOption(&max_it, "-mi", "--max-it",
@@ -288,7 +332,6 @@ int main(int argc, char *argv[])
}
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
FilterSolver->SetupFEM();
FilterSolver->AssembleDiffusionBilinear();
BilinearForm mass(&control_fes);
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
@@ -342,7 +385,7 @@ int main(int argc, char *argv[])
// 11. Iterate:
for (int k = 1; k <= max_it; k++)
{
if (k > 1) { alpha = std::pow((real_t) k,growth); }
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
mfem::out << "\nStep = " << k << std::endl;
@@ -379,9 +422,7 @@ int main(int argc, char *argv[])
// Step 5 - Update design variable ψ ← proj(ψ - αG)
psi.Add(-alpha, grad);
GridFunction alpha_grad(grad);
alpha_grad *= alpha;
const real_t material_volume = proj(psi, alpha_grad, target_volume);
const real_t material_volume = proj(psi, target_volume);
// Compute ||ρ - ρ_old|| in control fes.
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
+23 -183
View File
@@ -137,7 +137,7 @@ public:
exponent(exponent_), rho_min(rho_min_)
{
MFEM_ASSERT(rho_min_ >= 0.0, "rho_min must be >= 0");
MFEM_ASSERT(rho_min_ < 1.0, "rho_min must be < 1");
MFEM_ASSERT(rho_min_ < 1.0, "rho_min must be > 1");
MFEM_ASSERT(u, "displacement field is not set");
MFEM_ASSERT(rho_filter, "density field is not set");
}
@@ -231,12 +231,9 @@ private:
FiniteElementCollection * fec = nullptr;
FiniteElementSpace * fes = nullptr;
Array<int> ess_bdr;
Array<int> ess_tdof_list;
Array<int> neumann_bdr;
GridFunction * u = nullptr;
LinearForm * b = nullptr;
BilinearForm * a = nullptr;
OperatorPtr A;
bool parallel;
#ifdef MFEM_USE_MPI
ParMesh * pmesh = nullptr;
@@ -270,8 +267,6 @@ public:
void ResetFEM();
void SetupFEM();
void UpdateEssentialTDofs();
void AssembleDiffusionBilinear(bool update_ess_tdofs=true);
void Solve();
GridFunction * GetFEMSolution();
LinearForm * GetLinearForm() {return b;}
@@ -376,130 +371,6 @@ public:
};
/**
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
* ∫_Ω ρ dx = θ vol(Ω) as follows:
*
* 1. Compute the root of the R → R function
* f(c) = ∫_Ω sigmoid(ψ + c) dx - θ vol(Ω)
* using the Illinois method
* 2. Set ψ ← ψ + c.
*
* @param psi a GridFunction to be updated
* @param alpha_grad alpha multiplied by gradient
* @param target_volume θ vol(Ω)
* @param tol Illinois iteration tolerance
* @param max_its Illinois maximum iteration number
* @return real_t Final volume (∫_Ω sigmoid(ψ) dx)
*/
real_t proj(GridFunction &psi, GridFunction &alpha_grad, real_t target_volume,
real_t tol = 1e-12, int max_its = 100)
{
#ifdef MFEM_USE_MPI
FiniteElementSpace *fes = psi.FESpace();
ParFiniteElementSpace *pfes = dynamic_cast<ParFiniteElementSpace*>(fes);
#endif
ConstantCoefficient zero_cf(0.0);
real_t a = -alpha_grad.ComputeMaxError(zero_cf);
real_t b = -a;
real_t y = 0.0;
MappedGridFunctionCoefficient sigmoid_psi(
&psi, [&y](const real_t x) { return sigmoid(x + y); });
std::unique_ptr<LinearForm> int_sigmoid_psi;
#ifdef MFEM_USE_MPI
ParGridFunction *par_psi = dynamic_cast<ParGridFunction *>(&psi);
if (par_psi)
{
int_sigmoid_psi.reset(new ParLinearForm(par_psi->ParFESpace()));
}
else
{
int_sigmoid_psi.reset(new LinearForm(psi.FESpace()));
}
#else
int_sigmoid_psi.reset(new LinearForm(psi.FESpace()));
#endif
int_sigmoid_psi->AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
y = a;
int_sigmoid_psi->Assemble();
real_t f_a = int_sigmoid_psi->Sum(); // f_a := f(a) + θ vol(Ω)
y = b;
int_sigmoid_psi->Assemble();
real_t f_b = int_sigmoid_psi->Sum(); // f_b := f(b) + θ vol(Ω)
#ifdef MFEM_USE_MPI
if (pfes)
{
MPI_Allreduce(MPI_IN_PLACE, &f_a, 1, MPITypeMap<real_t>::mpi_type,
MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(MPI_IN_PLACE, &f_b, 1, MPITypeMap<real_t>::mpi_type,
MPI_SUM, MPI_COMM_WORLD);
}
#endif
f_a -= target_volume; // f_a := f(a)
f_b -= target_volume; // f_b := f(b)
real_t c = 0.0;
real_t f_c = 0.0;
int side = 0;
bool done = false;
for (int k=0; k < max_its; k++)
{
c = (f_a * b - f_b * a) / (f_a - f_b);
if (abs(b - a) < tol * abs(b + a)) { done = true; break; }
y = c;
int_sigmoid_psi->Assemble();
f_c = int_sigmoid_psi->Sum(); // f_c := f(c) + θ vol(Ω)
#ifdef MFEM_USE_MPI
if (pfes)
{
MPI_Allreduce(MPI_IN_PLACE, &f_c, 1, MPITypeMap<real_t>::mpi_type,
MPI_SUM, MPI_COMM_WORLD);
}
#endif
f_c -= target_volume; // f_c := f(c)
if (f_c * f_b > 0)
{
b = c;
f_b = f_c;
if (side == -1) { f_a /= 2.0; }
side = -1;
}
else if (f_c * f_a > 0)
{
a = c;
f_a = f_c;
if (side == 1) { f_b /= 2.0; }
side = 1;
}
else
{
done = true; break;
}
}
if (!done)
{
mfem_warning("Projection reached maximum iteration without converging. "
"Result may not be accurate.");
}
y = 0.0;
psi += c;
int_sigmoid_psi->Assemble();
real_t material_volume = int_sigmoid_psi->Sum();
#ifdef MFEM_USE_MPI
if (pfes)
{
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1,
MPITypeMap<real_t>::mpi_type, MPI_SUM, MPI_COMM_WORLD);
}
#endif
return material_volume;
}
// Poisson solver
@@ -551,8 +422,12 @@ void DiffusionSolver::SetupFEM()
}
}
void DiffusionSolver::UpdateEssentialTDofs()
void DiffusionSolver::Solve()
{
OperatorPtr A;
Vector B, X;
Array<int> ess_tdof_list;
#ifdef MFEM_USE_MPI
if (parallel)
{
@@ -565,39 +440,7 @@ void DiffusionSolver::UpdateEssentialTDofs()
#else
fes->GetEssentialTrueDofs(ess_bdr,ess_tdof_list);
#endif
}
void DiffusionSolver::AssembleDiffusionBilinear(bool update_ess_tdofs)
{
if (update_ess_tdofs)
{
UpdateEssentialTDofs();
}
#ifdef MFEM_USE_MPI
if (parallel)
{
a = new ParBilinearForm(pfes);
}
else
{
a = new BilinearForm(fes);
}
#else
a = new BilinearForm(fes);
#endif
a->AddDomainIntegrator(new DiffusionIntegrator(*diffcf));
if (masscf)
{
a->AddDomainIntegrator(new MassIntegrator(*masscf));
}
a->Assemble();
a->FormSystemMatrix(ess_tdof_list, A);
}
void DiffusionSolver::Solve()
{
Vector B, X;
*u=0.0;
if (b)
{
delete b;
@@ -632,33 +475,31 @@ void DiffusionSolver::Solve()
b->Assemble();
*u=0.0;
if (essbdr_cf)
{
u->ProjectBdrCoefficient(*essbdr_cf,ess_bdr);
}
BilinearForm * a = nullptr;
#ifdef MFEM_USE_MPI
if (parallel)
{
X.SetSize(pfes->TrueVSize());
B.SetSize(pfes->TrueVSize());
dynamic_cast<ParGridFunction*>(u)->ParallelAssemble(X);
dynamic_cast<ParLinearForm*>(b)->ParallelAssemble(B);
dynamic_cast<ParBilinearForm*>(a)->ParallelEliminateTDofsInRHS(
ess_tdof_list, X, B);
a = new ParBilinearForm(pfes);
}
else
{
X.NewDataAndSize(u->GetData(), u->Size());
B.NewDataAndSize(b->GetData(), b->Size());
a->EliminateVDofsInRHS(ess_tdof_list, X, B);
a = new BilinearForm(fes);
}
#else
X.NewDataAndSize(u->GetData(), u->Size());
B.NewDataAndSize(b->GetData(), b->Size());
a->EliminateVDofsInRHS(ess_tdof_list, X, B);
a = new BilinearForm(fes);
#endif
a->AddDomainIntegrator(new DiffusionIntegrator(*diffcf));
if (masscf)
{
a->AddDomainIntegrator(new MassIntegrator(*masscf));
}
a->Assemble();
if (essbdr_cf)
{
u->ProjectBdrCoefficient(*essbdr_cf,ess_bdr);
}
a->FormLinearSystem(ess_tdof_list, *u, *b, A, X, B);
CGSolver * cg = nullptr;
Solver * M = nullptr;
@@ -687,6 +528,7 @@ void DiffusionSolver::Solve()
delete M;
delete cg;
a->RecoverFEMSolution(X, *b, *u);
delete a;
}
GridFunction * DiffusionSolver::GetFEMSolution()
@@ -718,8 +560,6 @@ DiffusionSolver::~DiffusionSolver()
#endif
delete fec; fec = nullptr;
delete b;
A.Clear();
delete a;
}
+60 -11
View File
@@ -4,8 +4,8 @@
//
// Sample runs:
// mpirun -np 4 ex37p -alpha 10 -pv
// mpirun -np 4 ex37p -lambda 0.1 -mu 0.1 -growth 1
// mpirun -np 4 ex37p -o 2 -alpha 10.0 -mi 50 -vf 0.4 -ntol 1e-5 -growth 1.5
// mpirun -np 4 ex37p -lambda 0.1 -mu 0.1
// mpirun -np 4 ex37p -o 2 -alpha 5.0 -mi 50 -vf 0.4 -ntol 1e-5
// mpirun -np 4 ex37p -r 6 -o 2 -alpha 10.0 -epsilon 0.02 -mi 50 -ntol 1e-5
//
// Description: This example code demonstrates the use of MFEM to solve a
@@ -54,6 +54,61 @@
using namespace std;
using namespace mfem;
/**
* @brief Bregman projection of ρ = sigmoid(ψ) onto the subspace
* ρ dx = θ vol(Ω) as follows:
*
* 1. Compute the root of the R R function
* f(c) = sigmoid(ψ + c) dx - θ vol(Ω)
* 2. Set ψ ψ + c.
*
* @param psi a GridFunction to be updated
* @param target_volume θ vol(Ω)
* @param tol Newton iteration tolerance
* @param max_its Newton maximum iteration number
* @return real_t Final volume, sigmoid(ψ)
*/
real_t proj(ParGridFunction &psi, real_t target_volume, real_t tol=1e-12,
int max_its=10)
{
MappedGridFunctionCoefficient sigmoid_psi(&psi, sigmoid);
MappedGridFunctionCoefficient der_sigmoid_psi(&psi, der_sigmoid);
ParLinearForm int_sigmoid_psi(psi.ParFESpace());
int_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(sigmoid_psi));
ParLinearForm int_der_sigmoid_psi(psi.ParFESpace());
int_der_sigmoid_psi.AddDomainIntegrator(new DomainLFIntegrator(
der_sigmoid_psi));
bool done = false;
for (int k=0; k<max_its; k++) // Newton iteration
{
int_sigmoid_psi.Assemble(); // Recompute f(c) with updated ψ
real_t f = int_sigmoid_psi.Sum();
MPI_Allreduce(MPI_IN_PLACE, &f, 1, MPITypeMap<real_t>::mpi_type,
MPI_SUM, MPI_COMM_WORLD);
f -= target_volume;
int_der_sigmoid_psi.Assemble(); // Recompute df(c) with updated ψ
real_t df = int_der_sigmoid_psi.Sum();
MPI_Allreduce(MPI_IN_PLACE, &df, 1, MPITypeMap<real_t>::mpi_type,
MPI_SUM, MPI_COMM_WORLD);
const real_t dc = -f/df;
psi += dc;
if (abs(dc) < tol) { done = true; break; }
}
if (!done)
{
mfem_warning("Projection reached maximum iteration without converging. "
"Result may not be accurate.");
}
int_sigmoid_psi.Assemble();
real_t material_volume = int_sigmoid_psi.Sum();
MPI_Allreduce(MPI_IN_PLACE, &material_volume, 1,
MPITypeMap<real_t>::mpi_type, MPI_SUM, MPI_COMM_WORLD);
return material_volume;
}
/*
* ---------------------------------------------------------------
* ALGORITHM PREAMBLE
@@ -138,11 +193,10 @@ int main(int argc, char *argv[])
int ref_levels = 5;
int order = 2;
real_t alpha = 1.0;
real_t growth = 2;
real_t epsilon = 0.01;
real_t vol_fraction = 0.5;
int max_it = 1e3;
real_t itol = 1e-2;
real_t itol = 1e-1;
real_t ntol = 1e-4;
real_t rho_min = 1e-6;
real_t lambda = 1.0;
@@ -157,8 +211,6 @@ int main(int argc, char *argv[])
"Order (degree) of the finite elements.");
args.AddOption(&alpha, "-alpha", "--alpha-step-length",
"Step length for gradient descent.");
args.AddOption(&growth, "-growth", "--alpha-growth-rate",
"Growth rate of step length for gradient descent.");
args.AddOption(&epsilon, "-epsilon", "--epsilon-thickness",
"Length scale for ρ.");
args.AddOption(&max_it, "-mi", "--max-it",
@@ -307,7 +359,6 @@ int main(int argc, char *argv[])
}
FilterSolver->SetEssentialBoundary(ess_bdr_filter);
FilterSolver->SetupFEM();
FilterSolver->AssembleDiffusionBilinear();
ParBilinearForm mass(&control_fes);
mass.AddDomainIntegrator(new InverseIntegrator(new MassIntegrator(one)));
@@ -361,7 +412,7 @@ int main(int argc, char *argv[])
// 11. Iterate:
for (int k = 1; k <= max_it; k++)
{
if (k > 1) { alpha = std::pow((real_t) k,growth); }
if (k > 1) { alpha *= ((real_t) k) / ((real_t) k-1); }
if (myid == 0)
{
@@ -401,9 +452,7 @@ int main(int argc, char *argv[])
// Step 5 - Update design variable ψ ← proj(ψ - αG)
psi.Add(-alpha, grad);
ParGridFunction alpha_grad(grad);
alpha_grad *= alpha;
const real_t material_volume = proj(psi, alpha_grad, target_volume);
const real_t material_volume = proj(psi, target_volume);
// Compute ||ρ - ρ_old|| in control fes.
real_t norm_increment = zerogf.ComputeL1Error(succ_diff_rho);
+1 -5
View File
@@ -9,7 +9,6 @@
// ex4 -m ../data/beam-hex.mesh -o 2 -pa
// ex4 -m ../data/escher.mesh
// ex4 -m ../data/fichera.mesh -o 2 -hb
// ex4 -m ../data/fichera.mesh -o 2 -hb -ea
// ex4 -m ../data/fichera-q2.vtk
// ex4 -m ../data/fichera-q3.mesh -o 2 -sc
// ex4 -m ../data/square-disc-nurbs.mesh
@@ -19,7 +18,6 @@
// ex4 -m ../data/amr-quad.mesh
// ex4 -m ../data/amr-hex.mesh
// ex4 -m ../data/amr-hex.mesh -o 2 -hb
// ex4 -m ../data/amr-hex.mesh -o 2 -hb -ea
// ex4 -m ../data/fichera-amr.mesh -o 2 -sc
// ex4 -m ../data/ref-prism.mesh -o 1
// ex4 -m ../data/octahedron.mesh -o 1
@@ -27,8 +25,6 @@
//
// Device sample runs:
// ex4 -m ../data/star.mesh -pa -d cuda
// ex4 -m ../data/star.mesh -hb -ea -d cuda
// ex4 -m ../data/amr-quad.mesh -hb -ea -d cuda
// ex4 -m ../data/star.mesh -pa -d raja-cuda
// ex4 -m ../data/star.mesh -pa -d raja-omp
// ex4 -m ../data/beam-hex.mesh -pa -d cuda
@@ -197,7 +193,7 @@ int main(int argc, char *argv[])
cout << "Size of linear system: " << A->Height() << endl;
// 11. Solve the linear system A X = B.
if (!pa && (!ea || hybridization))
if (!pa)
{
#ifndef MFEM_USE_SUITESPARSE
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
-589
View File
@@ -1,589 +0,0 @@
// MFEM Example 41
//
// Compile with: make ex41
//
// Sample runs:
// ex41
// ex41 -cg
// ex41 -m ../data/periodic-hexagon.mesh -p 0 -r 2 -dt 0.005 -tf 10
// ex41 -m ../data/periodic-square.mesh -p 1 -r 2 -dt 0.005 -tf 9
// ex41 -m ../data/periodic-hexagon.mesh -p 1 -r 2 -dt 0.005 -tf 9
// ex41 -m ../data/amr-quad.mesh -p 1 -r 2 -dt 0.002 -tf 9
// ex41 -m ../data/star-q3.mesh -p 1 -r 2 -dt 0.001 -tf 9
// ex41 -m ../data/star-mixed.mesh -p 1 -r 2 -dt 0.005 -tf 9
// ex41 -m ../data/disc-nurbs.mesh -p 1 -r 3 -dt 0.005 -tf 9
// ex41 -m ../data/disc-nurbs.mesh -p 2 -r 3 -dt 0.005 -tf 9
// ex41 -m ../data/periodic-square.mesh -p 3 -r 4 -dt 0.0025 -tf 9 -vs 20
// ex41 -m ../data/periodic-cube.mesh -p 0 -r 2 -o 2 -dt 0.01 -tf 8
//
// Device sample runs:
//
// Description: This example code solves the time-dependent advection-diffusion
// equation du/dt + v.grad(u) - a div(grad(u)) = 0, where v is a
// given fluid velocity, a is the diffusion coefficient, and
// u0(x)=u(0,x) is a given initial condition.
//
// The example demonstrates the use of Discontinuous Galerkin (DG)
// bilinear forms in MFEM (face integrators), and the use of IMEX
// ODE time integrators.
//
// The option to use continuous finite elements is available too.
#include "mfem.hpp"
using namespace std;
using namespace mfem;
// Mesh bounding box
Vector bb_min, bb_max;
// Velocity coefficient
template<int problem=0>
void velocity_function(const Vector &x, Vector &v)
{
int dim = x.Size();
// map to the reference [-1,1] domain
Vector X(dim);
for (int i = 0; i < dim; i++)
{
real_t center = (bb_min[i] + bb_max[i]) * 0.5;
X(i) = 2 * (x(i) - center) / (bb_max[i] - bb_min[i]);
}
switch (problem)
{
case 0:
{
// Translations in 1D, 2D, and 3D
switch (dim)
{
case 1: v(0) = 1.0; break;
case 2: v(0) = sqrt(2./3.); v(1) = sqrt(1./3.); break;
case 3: v(0) = sqrt(3./6.); v(1) = sqrt(2./6.); v(2) = sqrt(1./6.);
break;
}
break;
}
case 1:
case 2:
{
// Clockwise rotation in 2D around the origin
const real_t w = M_PI/2;
switch (dim)
{
case 1: v(0) = 1.0; break;
case 2: v(0) = w*X(1); v(1) = -w*X(0); break;
case 3: v(0) = w*X(1); v(1) = -w*X(0); v(2) = 0.0; break;
}
break;
}
case 3:
{
// Clockwise twisting rotation in 2D around the origin
const real_t w = M_PI/2;
real_t d = max((X(0)+1.)*(1.-X(0)),0.) * max((X(1)+1.)*(1.-X(1)),0.);
d = d*d;
switch (dim)
{
case 1: v(0) = 1.0; break;
case 2: v(0) = d*w*X(1); v(1) = -d*w*X(0); break;
case 3: v(0) = d*w*X(1); v(1) = -d*w*X(0); v(2) = 0.0; break;
}
break;
}
}
}
// Initial condition
template<int problem=0>
real_t u0_function(const Vector &x)
{
int dim = x.Size();
// map to the reference [-1,1] domain
Vector X(dim);
for (int i = 0; i < dim; i++)
{
real_t center = (bb_min[i] + bb_max[i]) * 0.5;
X(i) = 2 * (x(i) - center) / (bb_max[i] - bb_min[i]);
}
switch (problem)
{
case 0:
case 1:
{
switch (dim)
{
case 1:
return exp(-40.*pow(X(0)-0.5,2));
case 2:
case 3:
{
real_t rx = 0.45, ry = 0.25, cx = 0., cy = -0.2, w = 10.;
if (dim == 3)
{
const real_t s = (1. + 0.25*cos(2*M_PI*X(2)));
rx *= s;
ry *= s;
}
return ( std::erfc(w*(X(0)-cx-rx))*std::erfc(-w*(X(0)-cx+rx)) *
std::erfc(w*(X(1)-cy-ry))*std::erfc(-w*(X(1)-cy+ry)) )/16;
}
}
}
case 2:
{
real_t x_ = X(0), y_ = X(1), rho, phi;
rho = std::hypot(x_, y_);
phi = atan2(y_, x_);
return pow(sin(M_PI*rho),2)*sin(3*phi);
}
case 3:
{
const real_t f = M_PI;
return sin(f*X(0))*sin(f*X(1));
}
}
return 0.0;
}
/// Solver for the implicit part of the ODE (the diffusion term).
/// Solves systems of the form: (M + dt*S) k = rhs.
class Implicit_Solver : public Solver
{
private:
SparseMatrix &M, &S, A;
CGSolver linear_solver;
BlockILU prec;
real_t dt;
public:
Implicit_Solver(SparseMatrix &M_, SparseMatrix &S_,
const FiniteElementSpace &fes)
: M(M_),
S(S_),
prec(fes.GetTypicalFE()->GetDof(),
BlockILU::Reordering::MINIMUM_DISCARDED_FILL),
dt(1.0)
{
linear_solver.iterative_mode = false;
linear_solver.SetRelTol(1e-9);
linear_solver.SetAbsTol(0.0);
linear_solver.SetMaxIter(100);
linear_solver.SetPrintLevel(0);
linear_solver.SetPreconditioner(prec);
}
void SetTimeStep(real_t dt_)
{
real_t ddt = dt-dt_;
real_t epsilon;
epsilon = std::numeric_limits<real_t>::epsilon();
epsilon*=10;
if (std::abs(ddt) > epsilon)
{
dt = dt_;
// Form operator A = M + dt*S
A = S;
A *= dt;
A += M;
// this will also call SetOperator on the preconditioner
linear_solver.SetOperator(A);
}
}
void SetOperator(const Operator &op) override
{
linear_solver.SetOperator(op);
}
void Mult(const Vector &x, Vector &y) const override
{
linear_solver.Mult(x, y);
}
};
/** A time-dependent operator for the right-hand side of the ODE. The weak
form of the advection-diffusion equation is M du/dt = K u - S u + b,
where M is the mass matrix, K and S are the advection and diffusion
matrices, and b describes the flow on the boundary. In the case of IMEX
evolution, the diffusion term is treated implicitly, and the advection
term is treated explicitly. */
class IMEX_Evolution : public TimeDependentOperator
{
private:
BilinearForm &M, &K, &S;
const Vector &b;
unique_ptr<Solver> M_prec;
CGSolver M_solver;
unique_ptr<Implicit_Solver> implicit_solver;
mutable Vector z;
public:
IMEX_Evolution(BilinearForm &M_, BilinearForm &K_, BilinearForm &S_,
const Vector &b_);
/// Evaluate k1=M^{-1}*G1(u,t); -> k1 = M^{-1}*(K*u + b)
void Mult1(const Vector &x, Vector &y) const;
/// Evaluate k2: M*k2 = G2(u+k2*dt,t); -> (M+S*dt)*k2=-S*u
void ImplicitSolve2(const real_t dt, const Vector &x, Vector &k);
void Mult(const Vector &x, Vector &y) const override
{
if (TimeDependentOperator::EvalMode::ADDITIVE_TERM_1 == GetEvalMode())
{
Mult1(x,y);
}
else
{
mfem_error("TimeDependentOperator::Mult() is not overridden!");
}
}
void ImplicitSolve(const real_t dt, const Vector &x, Vector &k) override
{
if (TimeDependentOperator::EvalMode::ADDITIVE_TERM_2 == GetEvalMode())
{
ImplicitSolve2(dt,x,k);
}
else
{
mfem_error("TimeDependentOperator::ImplicitSolve() is not overridden!");
}
}
};
int main(int argc, char *argv[])
{
// 1. Parse command-line options.
int problem = 0;
const char *mesh_file = "../data/periodic-square.mesh";
int ref_levels = 2;
int order = 3;
int ode_solver_type = 64; //IMEXRK3(3,4,3)
real_t t_final = 10.0;
real_t dt = 0.01;
bool paraview = false;
bool cg = false;
int vis_steps = 50;
real_t diffusion_term = 0.01;
real_t kappa = -1.0;
real_t sigma = -1.0;
bool visualization = true;
bool visit = false;
bool binary = false;
int precision = 8;
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh", "Mesh file to use.");
args.AddOption(&problem, "-p", "--problem",
"Problem setup to use. See options in velocity_function().");
args.AddOption(&ref_levels, "-r", "--refine",
"Number of times to refine the mesh uniformly.");
args.AddOption(&order, "-o", "--order", "Order of the finite elements.");
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
ODESolver::IMEXTypes.c_str());
args.AddOption(&t_final, "-tf", "--t-final", "Final time; start time is 0.");
args.AddOption(&dt, "-dt", "--time-step", "Time step.");
args.AddOption(&diffusion_term, "-dc", "--diffusion-coeff",
"Diffusion coefficient in the PDE.");
args.AddOption(&paraview, "-paraview", "--paraview-datafiles", "-no-paraview",
"--no-paraview-datafiles",
"Save data files for ParaView (paraview.org) visualization.");
args.AddOption(&vis_steps, "-vs", "--visualization-steps",
"Visualize every n-th timestep.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&binary, "-binary", "--binary-datafiles", "-ascii",
"--ascii-datafiles",
"Use binary (Sidre) or ascii format for VisIt data files.");
args.AddOption(&visit, "-visit", "--visit-datafiles", "-no-visit",
"--no-visit-datafiles",
"Save data files for VisIt (visit.llnl.gov) visualization.");
args.AddOption(&cg, "-cg", "--continuous-galerkin", "-dg",
"--discontinuous-galerkin",
"Use Continuous-Galerkin Finite elements (Default is DG)");
args.Parse();
if (!args.Good())
{
args.PrintUsage(cout);
return 1;
}
if (kappa < 0)
{
kappa = (order+1)*(order+1);
}
args.PrintOptions(cout);
// 2. Read the mesh from the given mesh file. We can handle geometrically
// periodic meshes in this code.
Mesh mesh(mesh_file);
const int dim = mesh.Dimension();
// 3. Define the IMEX (Split) ODE solver used for time integration. The IMEX
// solvers currently available are: 61 - Forward Backward Euler,
// 62 - IMEXRK2(2,2,2), 63 - IMEXRK2(2,3,2), and 64 - IMEX_DIRK_RK3.
unique_ptr<ODESolver> ode_solver = ODESolver::SelectIMEX(ode_solver_type);
// 4. Refine the mesh to increase the resolution. In this example we do
// 'ref_levels' of uniform refinement, where 'ref_levels' is a
// command-line parameter.
for (int lev = 0; lev < ref_levels; lev++) {mesh.UniformRefinement();}
if (mesh.NURBSext) {mesh.SetCurvature(max(order, 1));}
mesh.GetBoundingBox(bb_min, bb_max, max(order, 1));
// 5. Define the discontinuous DG finite element space of the given
// polynomial order on the refined mesh.
FiniteElementCollection *fec = NULL;
if (cg)
{
fec = new H1_FECollection(order, dim);
}
else
{
fec = new DG_FECollection(order, dim, BasisType::GaussLobatto);
}
FiniteElementSpace fes(&mesh, fec);
cout << "Number of unknowns: " << fes.GetVSize() << endl;
// 6. Set up and assemble the bilinear and linear forms corresponding to the
// DG discretization. The DGTraceIntegrator involves integrals over mesh
// interior faces.
std::unique_ptr<VectorFunctionCoefficient> velocity;
if (0==problem)
{
velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<0>));
}
else if (1==problem)
{
velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<1>));
}
else if (2==problem)
{
velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<2>));
}
else if (3==problem)
{
velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<3>));
}
ConstantCoefficient diff_coeff(diffusion_term);
BilinearForm m(&fes);
BilinearForm k(&fes);
BilinearForm s(&fes);
Vector b(fes.GetTrueVSize());
b = 0.0; //The inflow on the boundaries is set to zero.
m.AddDomainIntegrator(new MassIntegrator);
constexpr real_t alpha = -1.0;
k.AddDomainIntegrator(new ConvectionIntegrator(*velocity, alpha));
s.AddDomainIntegrator(new DiffusionIntegrator(diff_coeff));
if (!cg)
{
k.AddInteriorFaceIntegrator(new NonconservativeDGTraceIntegrator(*velocity,
alpha));
k.AddBdrFaceIntegrator(new NonconservativeDGTraceIntegrator(*velocity, alpha));
s.AddInteriorFaceIntegrator(new DGDiffusionIntegrator(diff_coeff, sigma,
kappa));
s.AddBdrFaceIntegrator(new DGDiffusionIntegrator(diff_coeff, sigma, kappa));
}
int skip_zeros = 0;
m.Assemble(skip_zeros);
k.Assemble(skip_zeros);
s.Assemble(skip_zeros);
m.Finalize(skip_zeros);
k.Finalize(skip_zeros);
s.Finalize(skip_zeros);
// 7. Define the initial conditions.
std::unique_ptr<FunctionCoefficient> u0;
if (0==problem)
{
u0.reset(new FunctionCoefficient(u0_function<0>));
}
else if (1==problem)
{
u0.reset(new FunctionCoefficient(u0_function<1>));
}
else if (2==problem)
{
u0.reset(new FunctionCoefficient(u0_function<2>));
}
else if (3==problem)
{
u0.reset(new FunctionCoefficient(u0_function<3>));
}
GridFunction u(&fes);
u.ProjectCoefficient(*u0);
// Create data collection for solution output: either VisItDataCollection for
// ascii data files, or SidreDataCollection for binary data files.
DataCollection *dc = NULL;
if (visit)
{
if (binary)
{
#ifdef MFEM_USE_SIDRE
dc = new SidreDataCollection("Example41", &mesh);
#else
MFEM_ABORT("Must build with MFEM_USE_SIDRE=YES for binary output.");
#endif
}
else
{
dc = new VisItDataCollection("Example41", &mesh);
dc->SetPrecision(precision);
}
dc->RegisterField("solution", &u);
dc->SetCycle(0);
dc->SetTime(0.0);
dc->Save();
}
// 8. Set up paraview visualization, if desired.
unique_ptr<ParaViewDataCollection> pv;
if (paraview)
{
pv = make_unique<ParaViewDataCollection>("Example41", &mesh);
pv->SetPrefixPath("ParaView");
pv->RegisterField("solution", &u);
pv->SetLevelsOfDetail(order);
pv->SetDataFormat(VTKFormat::BINARY);
pv->SetHighOrderOutput(true);
pv->SetCycle(0);
pv->SetTime(0.0);
pv->Save();
}
socketstream sout;
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
sout.open(vishost, visport);
if (!sout)
{
cout << "Unable to connect to GLVis server at "
<< vishost << ':' << visport << endl;
visualization = false;
cout << "GLVis visualization disabled.\n";
}
else
{
sout.precision(precision);
sout << "solution\n" << mesh << u;
sout << "pause\n";
sout << flush;
cout << "GLVis visualization paused."
<< " Press space (in the GLVis window) to resume it.\n";
}
}
// 9. Define the time-dependent evolution operator describing the ODE
// right-hand side, and perform time-integration (looping over the time
// iterations, ti, with a time-step dt).
IMEX_Evolution adv(m, k, s, b);
real_t t = 0.0;
adv.SetTime(t);
ode_solver->Init(adv);
bool done = false;
for (int ti = 0; !done; )
{
real_t dt_real = min(dt, t_final - t);
ode_solver->Step(u, t, dt_real);
ti++;
done = (t >= t_final - 1e-8*dt);
if (done || ti % vis_steps == 0)
{
cout << "time step: " << ti << ", time: " << t << endl;
if (paraview)
{
pv->SetCycle(ti);
pv->SetTime(t);
pv->Save();
}
if (visualization)
{
sout << "solution\n" << mesh << u << flush;
}
if (visit)
{
dc->SetCycle(ti);
dc->SetTime(t);
dc->Save();
}
}
}
delete fec;
return 0;
}
// Implementation of class IMEX_Evolution
IMEX_Evolution::IMEX_Evolution(BilinearForm &M_, BilinearForm &K_,
BilinearForm &S_, const Vector &b_)
: TimeDependentOperator(M_.FESpace()->GetTrueVSize()),
M(M_), K(K_), S(S_), b(b_), z(height)
{
Array<int> ess_tdof_list;
if (M.GetAssemblyLevel() == AssemblyLevel::LEGACY)
{
M_prec = make_unique<DSmoother>(M.SpMat());
M_solver.SetOperator(M.SpMat());
implicit_solver = make_unique<Implicit_Solver>(M.SpMat(), S.SpMat(),
*M.FESpace());
}
else
{
MFEM_ABORT("Implicit time integration is not supported with partial assembly");
}
M_solver.SetPreconditioner(*M_prec);
M_solver.iterative_mode = false;
M_solver.SetRelTol(1e-9);
M_solver.SetAbsTol(0.0);
M_solver.SetMaxIter(100);
M_solver.SetPrintLevel(0);
}
void IMEX_Evolution::Mult1(const Vector &x, Vector &y) const
{
// Perform the explicit step
// y = M^{-1} (K x + b)
K.Mult(x, z);
z += b;
M_solver.Mult(z, y);
}
void IMEX_Evolution::ImplicitSolve2(const real_t dt, const Vector &x, Vector &k)
{
// Perform the implicit step
// solve for k, k = -(M+dt S)^{-1} S x
MFEM_VERIFY(implicit_solver != NULL,
"Implicit time integration is not supported with partial assembly");
S.Mult(x, z);
z.Neg();
implicit_solver->SetTimeStep(dt);
implicit_solver->Mult(z, k);
}
-737
View File
@@ -1,737 +0,0 @@
// MFEM Example 41 - Parallel Version
//
// Compile with: make ex41p
//
// Sample runs:
// mpirun -np 4 ex41p
// mpirun -np 4 ex41p -cg
// mpirun -np 4 ex41p -m ../data/periodic-hexagon.mesh -p 0 -dt 0.005 -tf 10
// mpirun -np 4 ex41p -m ../data/periodic-square.mesh -p 1 -dt 0.005 -tf 9
// mpirun -np 4 ex41p -m ../data/periodic-hexagon.mesh -p 1 -dt 0.005 -tf 9
// mpirun -np 4 ex41p -m ../data/star-q3.mesh -p 1 -rp 1 -dt 0.001 -tf 9
// mpirun -np 4 ex41p -m ../data/disc-nurbs.mesh -p 1 -rp 1 -dt 0.005 -tf 9
// mpirun -np 4 ex41p -m ../data/disc-nurbs.mesh -p 2 -rp 1 -dt 0.005 -tf 9
// mpirun -np 4 ex41p -m ../data/periodic-square.mesh -rp 2 -dt 0.0025 -tf 9 -vs 20
// mpirun -np 4 ex41p -m ../data/periodic-cube.mesh -p 0 -rs 2 -o 2 -dt 0.01 -tf 8
//
// Device sample runs:
//
// Description: This example code solves the time-dependent advection-diffusion
// equation du/dt + v.grad(u) - a div(grad(u)) = 0, where v is a
// given fluid velocity, a is the diffusion coefficient, and
// u0(x)=u(0,x) is a given initial condition.
//
// The example demonstrates the use of Discontinuous Galerkin (DG)
// bilinear forms in MFEM (face integrators), DG-LOR Preconditioning
// and the use of IMEX ODE time integrators.
//
// The Option to use Continuous Finite Elements is available too.
#include "mfem.hpp"
using namespace std;
using namespace mfem;
// Mesh bounding box
Vector bb_min, bb_max;
// Velocity coefficient
template<int problem=0>
void velocity_function(const Vector &x, Vector &v)
{
int dim = x.Size();
// map to the reference [-1,1] domain
Vector X(dim);
for (int i = 0; i < dim; i++)
{
real_t center = (bb_min[i] + bb_max[i]) * 0.5;
X(i) = 2 * (x(i) - center) / (bb_max[i] - bb_min[i]);
}
switch (problem)
{
case 0:
{
// Translations in 1D, 2D, and 3D
switch (dim)
{
case 1: v(0) = 1.0; break;
case 2: v(0) = sqrt(2./3.); v(1) = sqrt(1./3.); break;
case 3: v(0) = sqrt(3./6.); v(1) = sqrt(2./6.); v(2) = sqrt(1./6.);
break;
}
break;
}
case 1:
case 2:
{
// Clockwise rotation in 2D around the origin
const real_t w = M_PI/2;
switch (dim)
{
case 1: v(0) = 1.0; break;
case 2: v(0) = w*X(1); v(1) = -w*X(0); break;
case 3: v(0) = w*X(1); v(1) = -w*X(0); v(2) = 0.0; break;
}
break;
}
case 3:
{
// Clockwise twisting rotation in 2D around the origin
const real_t w = M_PI/2;
real_t d = max((X(0)+1.)*(1.-X(0)),0.) * max((X(1)+1.)*(1.-X(1)),0.);
d = d*d;
switch (dim)
{
case 1: v(0) = 1.0; break;
case 2: v(0) = d*w*X(1); v(1) = -d*w*X(0); break;
case 3: v(0) = d*w*X(1); v(1) = -d*w*X(0); v(2) = 0.0; break;
}
break;
}
}
}
// Initial condition
template<int problem=0>
real_t u0_function(const Vector &x)
{
int dim = x.Size();
// map to the reference [-1,1] domain
Vector X(dim);
for (int i = 0; i < dim; i++)
{
real_t center = (bb_min[i] + bb_max[i]) * 0.5;
X(i) = 2 * (x(i) - center) / (bb_max[i] - bb_min[i]);
}
switch (problem)
{
case 0:
case 1:
{
switch (dim)
{
case 1:
return exp(-40.*pow(X(0)-0.5,2));
case 2:
case 3:
{
real_t rx = 0.45, ry = 0.25, cx = 0., cy = -0.2, w = 10.;
if (dim == 3)
{
const real_t s = (1. + 0.25*cos(2*M_PI*X(2)));
rx *= s;
ry *= s;
}
return ( std::erfc(w*(X(0)-cx-rx))*std::erfc(-w*(X(0)-cx+rx)) *
std::erfc(w*(X(1)-cy-ry))*std::erfc(-w*(X(1)-cy+ry)) )/16;
}
}
}
case 2:
{
real_t x_ = X(0), y_ = X(1), rho, phi;
rho = std::hypot(x_, y_);
phi = atan2(y_, x_);
return pow(sin(M_PI*rho),2)*sin(3*phi);
}
case 3:
{
const real_t f = M_PI;
return sin(f*X(0))*sin(f*X(1));
}
}
return 0.0;
}
class Implicit_Solver : public Solver
{
private:
HypreParMatrix &M, &S;
HypreParMatrix *A;
CGSolver linear_solver;
real_t dt;
SparseMatrix M_diag;
public:
Implicit_Solver(HypreParMatrix &M_, HypreParMatrix &S_,
const FiniteElementSpace &fes)
: M(M_),
S(S_),
A(nullptr),
linear_solver(M.GetComm()),
dt(1.0)
{
linear_solver.iterative_mode = false;
linear_solver.SetRelTol(1e-9);
linear_solver.SetAbsTol(0.0);
linear_solver.SetMaxIter(100);
linear_solver.SetPrintLevel(0);
M.GetDiag(M_diag);
}
void SetTimeStep(real_t dt_)
{
real_t ddt = dt-dt_;
// syncronize ddt across all processes
MPI_Comm comm = M.GetComm();
int myrank;
MPI_Comm_rank(comm, &myrank);
MPI_Bcast(&ddt, 1, MPI_DOUBLE, 0, comm);
real_t epsilon;
epsilon = std::numeric_limits<real_t>::epsilon();
// allow for some tolerance in the time stepping process
epsilon*=10;
if (fabs(ddt) > epsilon)
{
if (0==myrank)
{
cout << "Updating Implicit_Solver time step from " << dt
<< " to " << dt_ << endl;
}
delete A;
dt = dt_;
// Form operator A = M + dt*S
A = Add(dt, S, 1.0, M);
linear_solver.SetOperator(*A);
}
}
void SetOperator(const Operator &op) override
{
linear_solver.SetOperator(op);
}
void Mult(const Vector &x, Vector &y) const override
{
linear_solver.Mult(x, y);
}
void SetPreconditioner(Solver &precond)
{
linear_solver.SetPreconditioner(precond);
}
~Implicit_Solver() override
{
delete A;
}
};
/** A time-dependent operator for the right-hand side of the ODE. The DG weak
form of the advection-diffusion equation is (M + dt S) du/dt = Su - K u + b
, where M and K are the mass and advection matrices, and b describes the
flow on the boundary. In the case of IMEX evolution, the diffusion term is
treated implicitly, and the advection term is treated explicitly. */
class IMEX_Evolution : public TimeDependentOperator
{
private:
OperatorHandle M, K, S, A;
const Vector &b;
Solver *M_prec;
CGSolver M_solver;
Implicit_Solver *implicit_solver;
LORSolver<HypreBoomerAMG>* lor_solver;
mutable Vector z;
mutable Vector w;
public:
IMEX_Evolution(ParBilinearForm &M_, ParBilinearForm &K_, ParBilinearForm &S_,
const Vector &b_, ParBilinearForm &A_);
virtual
~IMEX_Evolution()
{
delete implicit_solver;
delete lor_solver;
delete M_prec;
}
void Mult1(const Vector &x, Vector &y) const;
void ImplicitSolve2(const real_t dt, const Vector &x, Vector &k);
void Mult(const Vector &x, Vector &y) const override
{
if (TimeDependentOperator::EvalMode::ADDITIVE_TERM_1 == GetEvalMode())
{
Mult1(x,y);
}
else
{
mfem_error("TimeDependentOperator::Mult() is not overridden!");
}
}
void ImplicitSolve(const real_t dt, const Vector &x, Vector &k) override
{
if (TimeDependentOperator::EvalMode::ADDITIVE_TERM_2 == GetEvalMode())
{
ImplicitSolve2(dt,x,k);
}
else
{
mfem_error("TimeDependentOperator::ImplicitSolve() is not overridden!");
}
}
};
int main(int argc, char *argv[])
{
// 1. Initialize MPI and HYPRE.
Mpi::Init();
int num_procs = Mpi::WorldSize();
int myid = Mpi::WorldRank();
Hypre::Init();
// 2. Parse command-line options.
int problem = 0;
const char *mesh_file = "../data/periodic-square.mesh";
int ser_ref_levels = 2;
int par_ref_levels = 0;
int order = 3;
int ode_solver_type = 64; // 61 - Forward Backward Euler
// 62 - IMEXRK2(2,2,2)
// 63 - IMEXRK2(2,3,2)
// 64 - IMEXRK3(3,4,3)
real_t t_final = 10.0;
real_t dt = 0.01;
bool paraview = false;
bool cg = false;
int vis_steps = 50;
bool adios2 = false;
bool binary = false;
real_t diffusion_term = 0.01;
real_t kappa = -1.0;
real_t sigma = -1.0;
bool visualization = true;
bool visit = false;
int precision = 16;
cout.precision(precision);
OptionsParser args(argc, argv);
args.AddOption(&mesh_file, "-m", "--mesh",
"Mesh file to use.");
args.AddOption(&problem, "-p", "--problem",
"Problem setup to use. See options in velocity_function().");
args.AddOption(&ser_ref_levels, "-rs", "--refine-serial",
"Number of times to refine the mesh uniformly in serial.");
args.AddOption(&par_ref_levels, "-rp", "--refine-parallel",
"Number of times to refine the mesh uniformly in parallel.");
args.AddOption(&order, "-o", "--order",
"Order (degree) of the finite elements.");
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
ODESolver::IMEXTypes.c_str());
args.AddOption(&t_final, "-tf", "--t-final",
"Final time; start time is 0.");
args.AddOption(&dt, "-dt", "--time-step",
"Time step.");
args.AddOption(&diffusion_term, "-dc", "--diffusion-coeff",
"Diffusion coefficient in the PDE.");
args.AddOption(&paraview, "-paraview", "--paraview-datafiles", "-no-paraview",
"--no-paraview-datafiles",
"Save data files for ParaView (paraview.org) visualization.");
args.AddOption(&visit, "-visit", "--visit-datafiles", "-no-visit",
"--no-visit-datafiles",
"Save data files for VisIt (visit.llnl.gov) visualization.");
args.AddOption(&adios2, "-adios2", "--adios2-streams", "-no-adios2",
"--no-adios2-streams",
"Save data using adios2 streams.");
args.AddOption(&binary, "-binary", "--binary-datafiles", "-ascii",
"--ascii-datafiles",
"Use binary (Sidre) or ascii format for VisIt data files.");
args.AddOption(&vis_steps, "-vs", "--visualization-steps",
"Visualize every n-th timestep.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&cg, "-cg", "--continuous-galerkin", "-dg",
"--discontinuous-galerkin",
"Use Continuous-Galerkin Finite elements (Default is DG)");
args.Parse();
if (!args.Good())
{
if (Mpi::Root())
{
args.PrintUsage(cout);
}
return 1;
}
if (Mpi::Root())
{
args.PrintOptions(cout);
}
if (kappa < 0)
{
kappa = (order+1)*(order+1);
}
// 3. Read the mesh from the given mesh file. We can handle geometrically
// periodic meshes in this code.
Mesh *mesh = new Mesh(mesh_file);
const int dim = mesh->Dimension();
// 4. Define the IMEX (Split) ODE solver used for time integration. The IMEX
// solvers currently available are: 55 - Forward Backward Euler,
// 56 - IMEXRK2(2,2,2), 57 - IMEXRK2(2,3,2), and
unique_ptr<ODESolver> ode_solver = ODESolver::SelectIMEX(ode_solver_type);
// 5. Refine the mesh to increase the resolution. In this example we do
// 'ref_levels' of uniform refinement, where 'ref_levels' is a
// command-line parameter.
for (int lev = 0; lev < ser_ref_levels; lev++) { mesh->UniformRefinement(); }
if (mesh->NURBSext)
{
mesh->SetCurvature(max(order, 1));
}
mesh->GetBoundingBox(bb_min, bb_max, max(order, 1));
// 6. Define the parallel mesh by a partitioning of the serial mesh. Refine
// this mesh further in parallel to increase the resolution. Once the
// parallel mesh is defined, the serial mesh can be deleted.
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
delete mesh;
for (int lev = 0; lev < par_ref_levels; lev++)
{
pmesh->UniformRefinement();
}
// 7. Define the discontinuous DG finite element space of the given
// polynomial order on the refined mesh.
FiniteElementCollection *fec = NULL;
if (cg)
{
fec = new H1_FECollection(order, dim);
}
else
{
fec = new DG_FECollection(order, dim, BasisType::GaussLobatto);
}
ParFiniteElementSpace *fes = new ParFiniteElementSpace(pmesh, fec);
HYPRE_BigInt global_vSize = fes->GlobalTrueVSize();
if (Mpi::Root())
{
cout << "Number of unknowns: " << global_vSize << endl;
}
// 8. Set up and assemble the bilinear and linear forms corresponding to the
// DG discretization. The DGTraceIntegrator involves integrals over mesh
// interior faces.
std::unique_ptr<VectorFunctionCoefficient> velocity;
if (0==problem)
{
velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<0>));
}
else if (1==problem)
{
velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<1>));
}
else if (2==problem)
{
velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<2>));
}
else if (3==problem)
{
velocity.reset(new VectorFunctionCoefficient(dim, velocity_function<3>));
}
ConstantCoefficient diff_coeff(diffusion_term);
ConstantCoefficient dt_diff_coeff(dt*diffusion_term);
ParBilinearForm *m = new ParBilinearForm(fes);
ParBilinearForm *k = new ParBilinearForm(fes);
ParBilinearForm *s = new ParBilinearForm(fes);
m->AddDomainIntegrator(new MassIntegrator());
constexpr real_t alpha = -1.0;
k->AddDomainIntegrator(new ConvectionIntegrator(*velocity, alpha));
s->AddDomainIntegrator(new DiffusionIntegrator(diff_coeff));
// For the preconditioner - create billinear form corresponding to
// operator (M + dt S)
ParBilinearForm *a = new ParBilinearForm(fes);
a->AddDomainIntegrator(new MassIntegrator);
a->AddDomainIntegrator(new DiffusionIntegrator(dt_diff_coeff));
if (!cg)
{
k->AddInteriorFaceIntegrator(new NonconservativeDGTraceIntegrator(*velocity,
alpha));
k->AddBdrFaceIntegrator(new NonconservativeDGTraceIntegrator(*velocity, alpha));
s->AddInteriorFaceIntegrator(new DGDiffusionIntegrator(diff_coeff, sigma,
kappa));
s->AddBdrFaceIntegrator(new DGDiffusionIntegrator(diff_coeff, sigma, kappa));
a->AddInteriorFaceIntegrator(new DGDiffusionIntegrator(dt_diff_coeff, sigma,
kappa));
a->AddBdrFaceIntegrator(new DGDiffusionIntegrator(dt_diff_coeff, sigma, kappa));
}
int skip_zeros = 0;
m->Assemble(skip_zeros);
k->Assemble(skip_zeros);
s->Assemble(skip_zeros);
a->Assemble();
m->Finalize(skip_zeros);
k->Finalize(skip_zeros);
s->Finalize(skip_zeros);
a->Finalize(skip_zeros);
HypreParVector b(fes);
b = 0.0;
// 9. Define the initial conditions. Set up visualization (if desired).
std::unique_ptr<FunctionCoefficient> u0;
if (0==problem)
{
u0.reset(new FunctionCoefficient(u0_function<0>));
}
else if (1==problem)
{
u0.reset(new FunctionCoefficient(u0_function<1>));
}
else if (2==problem)
{
u0.reset(new FunctionCoefficient(u0_function<2>));
}
else if (3==problem)
{
u0.reset(new FunctionCoefficient(u0_function<3>));
}
ParGridFunction *u = new ParGridFunction(fes);
u->ProjectCoefficient(*u0);
HypreParVector *U = u->GetTrueDofs();
DataCollection *dc = NULL;
if (visit)
{
if (binary)
{
#ifdef MFEM_USE_SIDRE
dc = new SidreDataCollection("Example41-Parallel", pmesh);
#else
MFEM_ABORT("Must build with MFEM_USE_SIDRE=YES for binary output.");
#endif
}
else
{
dc = new VisItDataCollection("Example41-Parallel", pmesh);
dc->SetPrecision(precision);
// To save the mesh using MFEM's parallel mesh format:
// dc->SetFormat(DataCollection::PARALLEL_FORMAT);
}
dc->RegisterField("solution", u);
dc->SetCycle(0);
dc->SetTime(0.0);
dc->Save();
}
ParaViewDataCollection *pd = NULL;
if (paraview)
{
pd = new ParaViewDataCollection("Example41P", pmesh);
pd->SetPrefixPath("ParaView");
pd->RegisterField("solution", u);
pd->SetLevelsOfDetail(order);
pd->SetDataFormat(VTKFormat::BINARY);
pd->SetHighOrderOutput(true);
pd->SetCycle(0);
pd->SetTime(0.0);
pd->Save();
}
socketstream sout;
if (visualization)
{
char vishost[] = "localhost";
int visport = 19916;
sout.open(vishost, visport);
if (!sout)
{
if (Mpi::Root())
{
cout << "Unable to connect to GLVis server at "
<< vishost << ':' << visport << endl;
}
visualization = false;
if (Mpi::Root())
{
cout << "GLVis visualization disabled.\n";
}
}
else
{
sout << "parallel " << num_procs << " " << myid << "\n";
sout.precision(precision);
sout << "solution\n" << *pmesh << *u;
sout << "pause\n";
sout << flush;
if (Mpi::Root())
{
cout << "GLVis visualization paused."
<< " Press space (in the GLVis window) to resume it.\n";
}
}
}
#ifdef MFEM_USE_ADIOS2
ADIOS2DataCollection *adios2_dc = NULL;
if (adios2)
{
std::string postfix(mesh_file);
postfix.erase(0, std::string("../data/").size() );
postfix += "_o" + std::to_string(order);
const std::string collection_name = "ex41-p-" + postfix + ".bp";
adios2_dc = new ADIOS2DataCollection(MPI_COMM_WORLD, collection_name, pmesh);
// output data substreams are half the number of mpi processes
adios2_dc->SetParameter("SubStreams", std::to_string(num_procs/2) );
// adios2_dc->SetLevelsOfDetail(2);
adios2_dc->RegisterField("solution", u);
adios2_dc->SetCycle(0);
adios2_dc->SetTime(0.0);
adios2_dc->Save();
}
#endif
// 10. Define the time-dependent evolution operator describing the
// ODE right-hand side, and perform time-integration (looping
// over the time iterations, ti, with a time-step dt).
IMEX_Evolution adv(*m, *k, *s, b, *a);
real_t t = 0.0;
adv.SetTime(t);
ode_solver->Init(adv);
bool done = false;
for (int ti = 0; !done; )
{
real_t dt_real = min(dt, t_final - t);
ode_solver->Step(*U, t, dt_real);
ti++;
done = (t >= t_final - 1e-8*dt);
if (done || ti % vis_steps == 0)
{
if (Mpi::Root())
{
cout << "time step: " << ti << ", time: " << t << endl;
}
*u = *U;
if (visualization)
{
sout << "parallel " << num_procs << " " << myid << "\n";
sout << "solution\n" << *pmesh << *u << flush;
}
if (paraview)
{
pd->SetCycle(ti);
pd->SetTime(t);
pd->Save();
}
#ifdef MFEM_USE_ADIOS2
// transient solutions can be visualized with ParaView
if (adios2)
{
adios2_dc->SetCycle(ti);
adios2_dc->SetTime(t);
adios2_dc->Save();
}
#endif
}
}
// 11. Free the used memory.
delete pd;
delete U;
delete u;
delete a;
delete s;
delete k;
delete m;
delete fes;
delete pmesh;
delete dc;
delete fec;
return 0;
}
// Implementation of class IMEX_Evolution
IMEX_Evolution::IMEX_Evolution(ParBilinearForm &M_, ParBilinearForm &K_,
ParBilinearForm &S_, const Vector &b_, ParBilinearForm &A_)
: TimeDependentOperator(M_.ParFESpace()->GetTrueVSize()), b(b_),
M_solver(M_.ParFESpace()->GetComm()), z(height), w(height)
{
if (M_.GetAssemblyLevel()==AssemblyLevel::LEGACY)
{
M.Reset(M_.ParallelAssemble(), true);
K.Reset(K_.ParallelAssemble(), true);
S.Reset(S_.ParallelAssemble(), true);
}
else
{
M.Reset(&M_, false);
K.Reset(&K_, false);
S.Reset(&S_, false);
}
M_solver.SetOperator(*M);
Array<int> ess_tdof_list;
if (M_.GetAssemblyLevel() == AssemblyLevel::LEGACY)
{
A.Reset(A_.ParallelAssemble(), true);
HypreParMatrix &M_mat = *M.As<HypreParMatrix>();
HypreParMatrix &S_mat = *S.As<HypreParMatrix>();
HypreSmoother *hypre_prec = new HypreSmoother(M_mat, HypreSmoother::Jacobi);
M_prec = hypre_prec;
implicit_solver = new Implicit_Solver(M_mat, S_mat, *M_.FESpace());
lor_solver = new LORSolver<HypreBoomerAMG>(A_, ess_tdof_list);
lor_solver->GetSolver().SetSystemsOptions(A_.ParFESpace()->GetVDim(), true);
implicit_solver -> SetPreconditioner(*lor_solver);
}
else
{
MFEM_ABORT("Implicit time integration is not supported with partial assembly");
}
M_solver.SetPreconditioner(*M_prec);
M_solver.iterative_mode = false;
M_solver.SetRelTol(1e-9);
M_solver.SetAbsTol(0.0);
M_solver.SetMaxIter(100);
M_solver.SetPrintLevel(0);
}
void IMEX_Evolution::Mult1(const Vector &x, Vector &y) const
{
// Perform the explicit step
// y = M^{-1} (K x + b)
K->Mult(x, z);
z += b;
M_solver.Mult(z, y);
}
void IMEX_Evolution::ImplicitSolve2(const real_t dt, const Vector &x, Vector &k)
{
// Perform the implicit step
// solve for k, k = -(M+dt S)^{-1} S x
MFEM_VERIFY(implicit_solver != NULL,
"Implicit time integration is not supported with partial assembly");
S->Mult(x, z);
z*= -1.0;
implicit_solver->SetTimeStep(dt);
implicit_solver->Mult(z, k);
}
+1 -6
View File
@@ -9,7 +9,6 @@
// mpirun -np 4 ex4p -m ../data/beam-hex.mesh -o 2 -pa
// mpirun -np 4 ex4p -m ../data/escher.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/fichera.mesh -o 2 -hb
// mpirun -np 4 ex4p -m ../data/fichera.mesh -o 2 -hb -ea
// mpirun -np 4 ex4p -m ../data/fichera-q2.vtk
// mpirun -np 4 ex4p -m ../data/fichera-q3.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/square-disc-nurbs.mesh -o 3
@@ -18,18 +17,14 @@
// mpirun -np 4 ex4p -m ../data/periodic-cube.mesh -no-bc
// mpirun -np 4 ex4p -m ../data/amr-quad.mesh
// mpirun -np 3 ex4p -m ../data/amr-quad.mesh -o 2 -hb
// mpirun -np 3 ex4p -m ../data/amr-quad.mesh -o 2 -hb -ea
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -hb
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -hb -ea
// mpirun -np 4 ex4p -m ../data/ref-prism.mesh -o 1
// mpirun -np 4 ex4p -m ../data/octahedron.mesh -o 1
// mpirun -np 4 ex4p -m ../data/star-surf.mesh -o 3 -hb
//
// Device sample runs:
// mpirun -np 4 ex4p -m ../data/star.mesh -pa -d cuda
// mpirun -np 4 ex4p -m ../data/star.mesh -ea -hb -d cuda
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -ea -hb -d cuda
// mpirun -np 4 ex4p -m ../data/star.mesh -pa -d raja-cuda
// mpirun -np 4 ex4p -m ../data/star.mesh -pa -d raja-omp
// mpirun -np 4 ex4p -m ../data/beam-hex.mesh -pa -d cuda
@@ -235,7 +230,7 @@ int main(int argc, char *argv[])
pcg->SetMaxIter(2000);
pcg->SetPrintLevel(1);
if (hybridization) { prec = new HypreBoomerAMG(*A.As<HypreParMatrix>()); }
else if (pa || ea) { prec = new OperatorJacobiSmoother(*a, ess_tdof_list); }
else if (pa) { prec = new OperatorJacobiSmoother(*a, ess_tdof_list); }
else
{
ParFiniteElementSpace *prec_fespace =
+1 -20
View File
@@ -160,7 +160,6 @@ int main(int argc, char *argv[])
bool paraview = false;
bool binary = false;
int vis_steps = 5;
bool solve_implicit_state = false;
int precision = 8;
cout.precision(precision);
@@ -188,9 +187,6 @@ int main(int argc, char *argv[])
"Final time; start time is 0.");
args.AddOption(&dt, "-dt", "--time-step",
"Time step.");
args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
"-imp-slope", "--implicit-slope",
"Implicitly solve for stage state or slope.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
@@ -370,11 +366,6 @@ int main(int argc, char *argv[])
// right-hand side, and perform time-integration (looping over the time
// iterations, ti, with a time-step dt).
FE_Evolution adv(m, k, b);
using ImplicitVariableType = FE_Evolution::ImplicitVariableType;
ImplicitVariableType imp_var = solve_implicit_state ?
ImplicitVariableType::STATE
: ImplicitVariableType::SLOPE;
adv.SetImplicitVariableType(imp_var);
real_t t = 0.0;
adv.SetTime(t);
@@ -468,17 +459,7 @@ void FE_Evolution::ImplicitSolve(const real_t dt, const Vector &x, Vector &k)
{
MFEM_VERIFY(dg_solver != NULL,
"Implicit time integration is not supported with partial assembly");
// Construct current right-hand side for stage state vs. slope solve
if (ImplicitVarTypeIsState())
{
// k, on return, is the stage value u
M.Mult(x, z);
}
else
{
// k, on return, is the stage slope du/dt
K.Mult(x, z);
}
K.Mult(x, z);
z += b;
dg_solver->SetTimeStep(dt);
dg_solver->Mult(z, k);
+1 -20
View File
@@ -257,7 +257,6 @@ int main(int argc, char *argv[])
bool adios2 = false;
bool binary = false;
int vis_steps = 5;
bool solve_implicit_state = false;
#if MFEM_HYPRE_VERSION >= 21800
PrecType prec_type = PrecType::AIR;
#else
@@ -291,9 +290,6 @@ int main(int argc, char *argv[])
"Final time; start time is 0.");
args.AddOption(&dt, "-dt", "--time-step",
"Time step.");
args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
"-imp-slope", "--implicit-slope",
"Implicitly solve for stage state or slope.");
args.AddOption((int *)&prec_type, "-pt", "--prec-type", "Preconditioner for "
"implicit solves. 0 for ILU, 1 for pAIR-AMG.");
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
@@ -540,11 +536,6 @@ int main(int argc, char *argv[])
// right-hand side, and perform time-integration (looping over the time
// iterations, ti, with a time-step dt).
FE_Evolution adv(*m, *k, *B, prec_type);
using ImplicitVariableType = FE_Evolution::ImplicitVariableType;
ImplicitVariableType imp_var = solve_implicit_state ?
ImplicitVariableType::STATE
: ImplicitVariableType::SLOPE;
adv.SetImplicitVariableType(imp_var);
real_t t = 0.0;
adv.SetTime(t);
@@ -685,17 +676,7 @@ FE_Evolution::FE_Evolution(ParBilinearForm &M_, ParBilinearForm &K_,
// (M - dt*K) d = K*u + b
void FE_Evolution::ImplicitSolve(const real_t dt, const Vector &x, Vector &k)
{
// Construct current right-hand side for stage state vs. slope solve
if (ImplicitVarTypeIsState())
{
// k, on return, is the stage value u
M->Mult(x, z);
}
else
{
// k, on return, is the stage slope du/dt
K->Mult(x, z);
}
K->Mult(x, z);
z += b;
dg_solver->SetTimeStep(dt);
dg_solver->Mult(z, k);
-6
View File
@@ -14,12 +14,6 @@ list(APPEND GINKGO_EXAMPLES_SRCS
ex1.cpp
)
if (MFEM_USE_MPI AND GINKGO_BUILD_MPI)
list(APPEND GINKGO_EXAMPLES_SRCS
ex1p.cpp
)
endif()
# Include the source directory where mfem.hpp and mfem-performance.hpp are.
include_directories(BEFORE ${PROJECT_BINARY_DIR})
+3 -3
View File
@@ -207,7 +207,7 @@ int main(int argc, char *argv[])
Ginkgo::IcPreconditioner ginkgo_precond(exec, "paric", 30);
Ginkgo::CGSolver ginkgo_solver(exec, ginkgo_precond);
ginkgo_solver.SetPrintLevel(print_lvl);
ginkgo_solver.SetRelTol(sqrt(1e-12));
ginkgo_solver.SetRelTol(1e-12);
ginkgo_solver.SetAbsTol(0.0);
ginkgo_solver.SetMaxIter(400);
ginkgo_solver.SetOperator(*(A.Ptr()));
@@ -225,7 +225,7 @@ int main(int argc, char *argv[])
Ginkgo::MFEMPreconditioner gko_M(exec, M);
Ginkgo::CGSolver ginkgo_solver(exec, gko_M);
ginkgo_solver.SetPrintLevel(print_lvl);
ginkgo_solver.SetRelTol(sqrt(1e-12));
ginkgo_solver.SetRelTol(1e-12);
ginkgo_solver.SetAbsTol(0.0);
ginkgo_solver.SetMaxIter(400);
ginkgo_solver.SetOperator(*(A.Ptr()));
@@ -283,7 +283,7 @@ int main(int argc, char *argv[])
Ginkgo::MFEMPreconditioner gko_M(exec, M);
Ginkgo::CGSolver ginkgo_solver(exec, gko_M);
ginkgo_solver.SetPrintLevel(print_lvl);
ginkgo_solver.SetRelTol(sqrt(1e-12));
ginkgo_solver.SetRelTol(1e-12);
ginkgo_solver.SetAbsTol(0.0);
ginkgo_solver.SetMaxIter(400);
ginkgo_solver.SetOperator(*(A.Ptr()));

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