Compare commits

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Author SHA1 Message Date
termi-official 0fe62facef Remove problematic inline. 2023-11-17 12:08:37 +01:00
Veselin Dobrev 110bec1507 Merge pull request #3956 from mfem/projectbdr-assert-bug
Wrong assert code in ParGF::ProjectBdrCoefficient
2023-11-15 19:00:47 -08:00
Veselin Dobrev 68635cc1a8 Merge pull request #3081 from mfem/sjg/strumpack-solver-dev
Update STRUMPACK solver interface
2023-11-15 18:58:00 -08:00
Tzanio Kolev 8bb929c2ff Merge pull request #3820 from mfem/sjg/stateless-doftrans-threadsafe
Simplifications to `DofTransformation` and `StatelessDofTransformation`
2023-11-15 17:43:43 -08:00
Tzanio Kolev 4161aac03e Merge pull request #3962 from mfem/tmop-mu14-update
Update to TMOP metric - mu_14
2023-11-14 12:06:34 -08:00
Mark L. Stowell 26613eec97 Merge pull request #3524 from mfem/sjg/bilinearform-integs-marker
Complete domain integrator marker support
2023-11-14 11:46:37 -08:00
Mark L. Stowell 8a5dbbe3fb Merge branch 'master' into sjg/bilinearform-integs-marker 2023-11-14 11:13:58 -08:00
Sebastian Grimberg 4202daa1fa Revert to MPI_Init when the requested threading level does not require MPI_Init_thread 2023-11-13 08:59:04 -08:00
Tzanio Kolev 1c58d6d3d1 Merge pull request #3884 from mfem/lor-surface-meshes
Support surface meshes in batched LOR assembly
2023-11-12 10:30:57 -08:00
Tzanio Kolev b2acd235b2 Merge pull request #3685 from topazus/use-getaddrinfo
Replace deprecated gethostbyname by getaddrinfo
2023-11-12 10:28:31 -08:00
Tzanio Kolev b15d483611 Merge pull request #3968 from mfem/mish2/cmake_generated_headers
Avoid regenerating header files that haven't changed
2023-11-12 10:28:06 -08:00
Tzanio Kolev ecfab8fe9f Merge pull request #3964 from mfem/extra-semicolon-warnings-fix
Fix warnings about extra semicolons from GCC
2023-11-09 07:05:02 -08:00
Tzanio Kolev 935be38e4f Merge pull request #3966 from mfem/bugfix/rwa/reset-lazy-data-parmesh-ncref
Call ResetLazyData for ParMesh undergoing nonconforming refinement
2023-11-09 07:04:13 -08:00
Tzanio Kolev 23a78751d5 Merge pull request #3811 from mfem/bdr-1d
Unify Mesh::be_to_face
2023-11-09 07:02:22 -08:00
Will PaznerandKetan Mittal 21de36604a Fix typo (dim should have been sdim)
Co-authored-by: Ketan Mittal <mittal3@llnl.gov>
2023-11-07 14:24:30 -08:00
Sam Mish 1420fc6b63 avoid regenerating headers that haven't changed 2023-11-07 12:43:59 -08:00
Sebastian Grimberg 723a613236 Clean up unnecessary ;; 2023-11-07 09:08:19 -08:00
Mark L. Stowell fd4c6892a4 Merge branch 'master' into sjg/bilinearform-integs-marker 2023-11-06 15:31:47 -08:00
Robert W. Anderson d6205812cf need a ResetLazyData() when mesh is a pmesh and doing nonconforming refinement 2023-11-06 15:09:08 -08:00
Sebastian Grimberg 0857e8e22f Merge branch 'master' into sjg/stateless-doftrans-threadsafe 2023-11-06 08:30:05 -08:00
Vladimir Z Tomov a3c51c8a70 gitignore 2023-11-05 15:47:51 -08:00
Vladimir Z Tomov 05154bad34 minor 2023-11-05 13:08:15 -08:00
Vladimir Z Tomov 8c8b52d572 fix cmake 2023-11-05 12:47:40 -08:00
Vladimir Z Tomov 718bece30c renamed check-tmop-metric to tmop-check-metric 2023-11-05 12:33:30 -08:00
Vladimir Z Tomov 3ce24ea2ba comments and testing function 2023-11-05 12:29:16 -08:00
Veselin Dobrev 62c0444cbf Fix warnings about extra ';' from GCC with '-pedantic' flag 2023-11-04 18:47:52 -07:00
Will Pazner 6594329638 Fix uninitialized be_to_face in 1D ParMesh 2023-11-04 14:07:41 -07:00
Mittal, Ketan 8ab890b7d7 remove fd option for sample run with mu14 2023-11-03 10:10:59 -07:00
Mittal, Ketan 9166d8fdcb add evalP and AssembleH for mu14 2023-11-03 10:05:17 -07:00
Will Pazner 11aa88c5e0 const correctness
Make num_codim_1 const using IIFE lambda.
2023-11-03 08:26:00 -07:00
Will Pazner 81af422efb Replace usage of deprecated function 2023-11-02 16:14:55 -07:00
Will Pazner de0f5a1da4 Replace usage of deprecated function 2023-11-02 15:41:39 -07:00
Will Pazner ed10bed8c8 Merge remote-tracking branch 'origin/master' into bdr-1d
# Conflicts:
#	fem/qspace.cpp
2023-11-02 14:52:08 -07:00
Will Pazner c794dae53b Move Mesh::GetBdrElementFaceIndex to header file
Also improve the Doxygen comment.

Move deprecated function Mesh::GetBdrElementEdgeIndex closer to its replacement
Mesh::GetBdrElementFaceIndex.
2023-11-02 14:47:56 -07:00
Will Pazner 9a70f50e22 Update CHANGELOG 2023-10-31 15:56:32 -07:00
Will Pazner c4957f1907 Merge remote-tracking branch 'origin/master' into lor-surface-meshes 2023-10-31 15:55:59 -07:00
Sebastian Grimberg aa8e466e42 Address PR feedback: Rename IsEmpty -> IsIdentity and clarify code comments 2023-10-31 12:26:35 -07:00
Vladimir Z Tomov d9937c5b82 Wrong assert code in ParGF::ProjectBdrCoefficient 2023-10-29 17:26:09 -07:00
Will Pazner 9863bc5bd6 Change Mesh::GetBdrFace to Mesh::GetBdrElementFaceIndex
Deprecate Mesh::GetBdrFace.
2023-10-24 15:13:45 -07:00
Sebastian Grimberg f4fdd37735 Unify DofTransformation and VDofTransformation classes for further simplification 2023-10-24 13:11:25 -07:00
Will Pazner 823eef1d9a Deprecate Mesh::GetBdrElementEdgeIndex in favor of Mesh::GetBdrFace 2023-10-24 09:25:59 -07:00
Will Pazner 6118beb9e0 Merge remote-tracking branch 'origin/master' into bdr-1d
# Conflicts:
#	mesh/submesh/psubmesh.cpp
2023-10-24 09:21:28 -07:00
Tzanio Kolev ffc2f31b6f Merge branch 'master' into lor-surface-meshes 2023-10-24 08:56:42 -07:00
Sebastian Grimberg a7f7fc94ea Fix bug in pmesh-fitting miniapp uncovered by NonlinearForm markers 2023-10-22 13:03:34 -07:00
Sebastian Grimberg 46c73c8745 Merge branch 'master' into sjg/stateless-doftrans-threadsafe 2023-10-22 12:00:11 -07:00
Sebastian Grimberg d000d212e5 Revert "ex31p with the -ams option in 2D revealed a bug for DiscreteLinearOperator::Assemble"
This reverts commit ef6074c420.
2023-10-22 11:56:01 -07:00
Sebastian Grimberg 742132da1b Merge branch 'master' into sjg/bilinearform-integs-marker 2023-10-22 11:51:45 -07:00
Tzanio Kolev 6885a99955 Merge branch 'master' into lor-surface-meshes 2023-10-10 06:26:07 -07:00
Sebastian Grimberg cce556551b Merge branch 'master' into sjg/stateless-doftrans-threadsafe 2023-10-03 08:05:38 -07:00
Sebastian Grimberg a71509b8ce Merge branch 'master' into sjg/strumpack-solver-dev 2023-10-03 08:05:20 -07:00
Sebastian Grimberg a8502b5b29 Fix bug for GPU builds when using sparse direct solvers with multiple RHS 2023-09-29 07:30:09 -07:00
Sebastian Grimberg a6b8ca5654 Merge branch 'master' into sjg/strumpack-solver-dev 2023-09-29 07:28:18 -07:00
Sebastian Grimberg 771ae1fc3c Merge branch 'master' into sjg/stateless-doftrans-threadsafe 2023-09-29 07:27:38 -07:00
Sebastian Grimberg 81e5489f5e Merge branch 'master' into sjg/stateless-doftrans-threadsafe 2023-09-26 08:44:44 -07:00
Sebastian Grimberg 26841dd3e3 Merge branch 'master' into sjg/strumpack-solver-dev 2023-09-26 08:42:32 -07:00
Will Pazner e1666702d4 Add surface mesh tests to batched LOR unit tests 2023-09-20 09:45:31 -07:00
Will Pazner 6c3c25d439 Correctly handle RT metric factors in batched LOR assembly 2023-09-20 09:45:06 -07:00
Will Pazner 13bd25ea34 Support surface meshes in parallel LOR solvers miniapp 2023-09-20 09:09:11 -07:00
Will Pazner e6f54f8b92 Handle space dimension in BatchedLOR_AMS::FormCoordinateVectors 2023-09-20 09:06:55 -07:00
Will Pazner 465e5e784e Support surface meshes in LOR Solvers miniapp 2023-09-20 09:06:55 -07:00
Will Pazner 369e76bd18 Support surface meshes in batched LOR assembly 2023-09-19 19:56:45 -07:00
Sebastian Grimberg 56b3d254a0 Merge branch 'master' into sjg/stateless-doftrans-threadsafe 2023-08-24 17:38:51 -07:00
Sebastian Grimberg 3059cf06c7 Merge branch 'master' into sjg/stateless-doftrans-threadsafe 2023-08-17 12:20:13 -07:00
Sebastian Grimberg 61f6c8e115 Merge branch 'master' into sjg/strumpack-solver-dev 2023-08-17 12:17:40 -07:00
Will Pazner 9159121ff7 Bug fix in Mesh::RemoveInternalBoundaries 2023-08-09 07:48:10 -07:00
Will Pazner 80916f85a4 Set 1D be_to_face in Mesh::FinalizeTopology 2023-08-09 07:48:10 -07:00
Will Pazner e37314ff51 Remove Mesh::be_to_edge
It cannot just be marked MFEM_DEPRECATED: gcc will complain.
2023-08-09 07:48:10 -07:00
Will Pazner 4d47bb42f3 Set up be_to_face in Mesh::Make1D 2023-08-09 07:48:10 -07:00
Will Pazner eba1824ebb Document that GetBdrElementEdgeIndex is the same as GetBdrFace 2023-08-09 07:48:10 -07:00
Will Pazner 9b4c527442 Deprecate Mesh::be_to_edge
Mesh::be_to_face should be used instead for 1D, 2D and 3D.
2023-08-09 07:48:10 -07:00
Will Pazner 66258d17ba Remove 1D as special case in GenerateBoundaryElements 2023-08-09 07:48:10 -07:00
Will Pazner 5359237ffd Add boundary elements in 1D ParSubMesh 2023-08-09 07:48:10 -07:00
Will Pazner 808a8b1a18 Support Mesh::GenerateBoundaryElements for 1D meshes 2023-08-09 07:48:10 -07:00
Sebastian Grimberg db6d9df56b Style/formatting updates for fespace.cpp 2023-08-08 11:59:26 -07:00
Sebastian Grimberg 55a6d1b25a Thread-safe FiniteElementSpace::GetElementDofs and GetBdrElementDofs variants for DofTransformation, similar to Mesh::GetElementTransformation and GetBdrElementTransformation 2023-08-08 11:59:26 -07:00
Sebastian Grimberg e42c849e49 Refactor DofTransformation classes and use in FiniteElementSpace to exploit statefull/stateless objects 2023-08-08 11:59:26 -07:00
Sebastian Grimberg 935f060063 Merge branch 'master' into sjg/strumpack-solver-dev 2023-07-30 18:20:01 -07:00
Sebastian Grimberg 449df5ceea Merge branch 'master' into sjg/bilinearform-integs-marker 2023-07-07 08:50:28 -07:00
Sebastian Grimberg f5d0658223 Address PR comments 2023-07-06 08:15:48 -07:00
Sebastian Grimberg c145a0c687 And another attempt to resolve LNK2019 error 2023-07-03 08:48:10 -07:00
Sebastian Grimberg 947cb04ea4 Another attempt to resolve LNK2019 error 2023-07-03 08:24:54 -07:00
Sebastian Grimberg 075c9caea4 Attempt to resolve LNK2019 linker error on Windows 2023-07-03 07:37:15 -07:00
Sebastian Grimberg 77810e3741 Alternative approach to 15934beb to inititalize MPI with MPI_Init_thread and a level of threading which by default is configured based on MFEM's build configuration, but can be overridden at runtime by modifying Mpi::default_thread_required 2023-06-29 15:31:47 -07:00
Veselin Dobrev 15934bebb9 In the singleton class Mpi: added method Mpi::Init_thread that
performs MPI initialization using MPI_Init_thread; added method
Mpi::Init_auto that selects what MPI init mode to use based on
the configured external packages used by MFEM -- currently it
calls Mpi::Init_thread(MPI_THREAD_MULTIPLE) when using STRUMPACK
built with SLATE or PT-Scotch, otherwise it calls Mpi::Init.

In the examples that can use STRUMPACK, use Mpi::Init_auto instead
of Mpi::Init.

Fix a small unrelated issue noticed during testing: in
miniapps/multidomain/multidomain.cpp, do not open GLVis socket
connections when visualization is disabled.
2023-06-27 17:47:22 -07:00
Sebastian Grimberg a2daad497d Merge branch 'master' into sjg/strumpack-solver-dev 2023-06-26 16:57:20 -07:00
Sebastian Grimberg a357c4fe42 Add warning message to mfem::Mpi::Init when MPI_Init_thread may be required instead of MPI_Init 2023-06-26 10:17:38 -07:00
Sebastian Grimberg 1726be86b9 Fix unit test hang for older STRUMPACK versions 2023-06-22 11:40:00 -07:00
Sebastian Grimberg a65ee60983 Merge branch 'master' into sjg/strumpack-solver-dev 2023-06-22 11:35:54 -07:00
Sebastian Grimberg ce47a35740 Merge branch 'master' into sjg/strumpack-solver-dev 2023-06-22 10:38:53 -07:00
Sebastian Grimberg e138f366fe Merge branch 'master' into sjg/strumpack-solver-dev 2023-06-21 12:10:10 -07:00
Tzanio Kolev c788c4787c Merge branch 'master' into use-getaddrinfo 2023-06-11 15:19:15 -07:00
topazus 1e642147ae Replace deprecated gethostbyname by getaddrinfo 2023-06-06 17:35:36 +08:00
Sebastian Grimberg ef6074c420 ex31p with the -ams option in 2D revealed a bug for DiscreteLinearOperator::Assemble 2023-05-17 16:04:31 -07:00
Sebastian Grimberg ec729707e9 Merge branch 'master' into sjg/bilinearform-integs-marker 2023-05-14 17:15:56 -07:00
Sebastian Grimberg 49ebade007 Minor added simplification missed in 052b5e0c 2023-05-05 11:30:25 -07:00
Sebastian Grimberg 76650a0d1e Merge branch 'master' into sjg/bilinearform-integs-marker 2023-05-05 10:10:48 -07:00
Sebastian Grimberg bdf529b9fe Fix unit test to work with old STRUMPACK versions prior to v7.1.2 2023-05-03 10:33:23 -07:00
Sebastian Grimberg a53acb7ce8 Merge branch 'master' into sjg/strumpack-solver-dev 2023-05-02 17:47:01 -07:00
Sebastian Grimberg 35bd5c84e9 Merge branch 'master' into sjg/bilinearform-integs-marker 2023-05-02 17:46:05 -07:00
Sebastian Grimberg ad21adbf57 Merge branch 'master' into sjg/bilinearform-integs-marker 2023-04-18 11:10:33 -07:00
Sebastian Grimberg ff5238ed5b Merge branch 'master' into sjg/strumpack-solver-dev 2023-04-18 11:09:49 -07:00
Sebastian Grimberg 6ae0a5bb89 Fix STRUMPACK version check bug 2023-04-11 21:56:44 -07:00
Sebastian Grimberg 8dedcb1ee3 Fix test and style updates 2023-04-11 10:25:00 -07:00
Sebastian Grimberg 417837e238 Remove code for unsupported STRUMPACK < v3.0
Fix ReturnCode bug for v6.3.1 as well.
2023-04-11 10:23:49 -07:00
Sebastian Grimberg b7a0ae8f6a Merge branch 'master' into sjg/strumpack-solver-dev 2023-04-11 10:01:40 -07:00
Sebastian Grimberg b9bf7a57c1 Merge branch 'master' into sjg/bilinearform-integs-marker 2023-04-03 10:07:41 -07:00
hughcars 3a1b7ebc51 Merge branch 'master' into sjg/strumpack-solver-dev 2023-03-30 12:44:22 -04:00
Sebastian Grimberg 8edc9eaab0 make style 2023-03-15 16:43:55 -07:00
Sebastian Grimberg 052b5e0cf2 Address PR comments 2023-03-15 16:43:02 -07:00
Sebastian Grimberg 6738a32c03 Add domain integrator markers for MixedBilinearForm, DiscreteLinearOperator, and NonlinearFormclasses 2023-03-01 10:48:18 -08:00
Sebastian Grimberg c2138c03e3 Merge branch 'master' into sjg/strumpack-solver-dev 2023-02-28 16:23:53 -08:00
Sebastian Grimberg 0b8b7d748c Merge branch 'master' into sjg/strumpack-solver-dev 2023-01-27 15:25:45 -08:00
Sebastian Grimberg 53bc105b9b Add option to enable or disable STRUMPACK GPU support 2023-01-27 15:25:41 -08:00
Sebastian Grimberg c7f42bd83c Fix deprecated Vector cast 2023-01-12 10:26:11 -08:00
Sebastian Grimberg e7fc38420d Build process fixes for STRUMPACK 2023-01-11 08:48:43 -08:00
Sebastian Grimberg 5295015a31 Add tests and update examples 2023-01-10 10:55:57 -08:00
Sebastian Grimberg 48750e304b Update STRUMPACK solver: 64-bit index support and multiple RHS
For STRUMPACK > 6.3.1, also support mixed precision solver.
2023-01-10 10:54:18 -08:00
81 changed files with 2375 additions and 1878 deletions
+1 -1
View File
@@ -300,7 +300,7 @@ miniapps/tools/convert-dc
miniapps/tools/lor-transfer
miniapps/tools/plor-transfer
miniapps/tools/get-values
miniapps/tools/check-tmop-metric
miniapps/tools/tmop-check-metric
miniapps/tools/tmop-metric-magnitude
miniapps/tools/nodal-transfer
miniapps/tools/ParaView
+2
View File
@@ -87,6 +87,8 @@ Linear and nonlinear solvers
- Added HIP support to the PETSc and SUNDIALS interfaces.
- Efficient GPU-accelerated LOR assembly now supports surface meshes.
New and updated examples and miniapps
-------------------------------------
- Added a new H(div) solver miniapp demonstrating the use of a matrix-free
+20 -2
View File
@@ -641,16 +641,34 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
foreach(Header mfem.hpp mfem-performance.hpp)
message(STATUS
"Writing substitute header --> \"${Header}\"")
file(WRITE "${PROJECT_BINARY_DIR}/${Header}"
file(WRITE "${PROJECT_BINARY_DIR}/${Header}.tmp"
"// Auto-generated file.
#define MFEM_CONFIG_FILE \"${PROJECT_BINARY_DIR}/config/_config.hpp\"
#include \"${PROJECT_SOURCE_DIR}/${Header}\"
")
execute_process(COMMAND ${CMAKE_COMMAND} -E copy_if_different
"${PROJECT_BINARY_DIR}/${Header}.tmp"
"${PROJECT_BINARY_DIR}/${Header}"
)
execute_process(COMMAND ${CMAKE_COMMAND} -E remove
"${PROJECT_BINARY_DIR}/${Header}.tmp"
)
# This version will be installed in the top include directory:
file(WRITE "${PROJECT_BINARY_DIR}/InstallHeaders/${Header}"
file(WRITE "${PROJECT_BINARY_DIR}/InstallHeaders/${Header}.tmp"
"// Auto-generated file.
#include \"mfem/${Header}\"
")
execute_process(COMMAND ${CMAKE_COMMAND} -E copy_if_different
"${PROJECT_BINARY_DIR}/InstallHeaders/${Header}.tmp"
"${PROJECT_BINARY_DIR}/InstallHeaders/${Header}"
)
execute_process(COMMAND ${CMAKE_COMMAND} -E remove
"${PROJECT_BINARY_DIR}/InstallHeaders/${Header}.tmp"
)
endforeach()
endif()
+1 -2
View File
@@ -659,8 +659,7 @@ The specific libraries and their options are:
requires the PT-Scotch and Scalapack libraries as well as ParMETIS, which
includes METIS 5 in its distribution. Starting with STRUMPACK v2.2.0, ParMETIS
and PT-Scotch are optional dependencies.
The support for STRUMPACK was added in MFEM v3.3.2 and it requires STRUMPACK
2.0.0 or later.
The support for STRUMPACK was added in MFEM v3.3.2.
URL: http://portal.nersc.gov/project/sparse/strumpack
Options: STRUMPACK_OPT, STRUMPACK_LIB.
Versions: STRUMPACK >= 3.0.0.
+2 -1
View File
@@ -157,7 +157,8 @@ set(STRUMPACK_DIR "${MFEM_DIR}/../STRUMPACK-build" CACHE PATH
# STRUMPACK may also depend on "OpenMP", depending on how it was compiled.
# Starting with v2.2.0 of STRUMPACK, ParMETIS and Scotch are optional.
set(STRUMPACK_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
"ScaLAPACK" "Scotch/ptscotch/ptscotcherr/scotch/scotcherr" CACHE STRING
"Scotch/ptscotch/ptscotcherr/scotch/scotcherr"
"ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
"Additional packages required by STRUMPACK.")
# If the MPI package does not find all required Fortran libraries:
# set(STRUMPACK_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
+3 -2
View File
@@ -262,12 +262,13 @@ int main(int argc, char *argv[])
#ifdef MFEM_USE_STRUMPACK
if (sp_solver)
{
STRUMPACKSolver * strumpack = new STRUMPACKSolver(argc, argv, MPI_COMM_WORLD);
STRUMPACKSolver * strumpack = new STRUMPACKSolver(MPI_COMM_WORLD, argc, argv);
strumpack->SetPrintFactorStatistics(true);
strumpack->SetPrintSolveStatistics(false);
strumpack->SetKrylovSolver(strumpack::KrylovSolver::DIRECT);
strumpack->SetReorderingStrategy(strumpack::ReorderingStrategy::METIS);
strumpack->DisableMatching();
strumpack->SetMatching(strumpack::MatchingJob::NONE);
strumpack->SetCompression(strumpack::CompressionType::NONE);
strumpack->SetOperator(*Arow);
strumpack->SetFromCommandLine();
precond = strumpack;
+29 -4
View File
@@ -170,6 +170,7 @@ int main(int argc, char *argv[])
bool herm_conv = true;
bool slu_solver = false;
bool mumps_solver = false;
bool strumpack_solver = false;
bool visualization = 1;
bool pa = false;
const char *device_config = "cpu";
@@ -200,6 +201,11 @@ int main(int argc, char *argv[])
#ifdef MFEM_USE_MUMPS
args.AddOption(&mumps_solver, "-mumps", "--mumps-solver", "-no-mumps",
"--no-mumps-solver", "Use the MUMPS Solver.");
#endif
#ifdef MFEM_USE_STRUMPACK
args.AddOption(&strumpack_solver, "-strumpack", "--strumpack-solver",
"-no-strumpack", "--no-strumpack-solver",
"Use the STRUMPACK Solver.");
#endif
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
@@ -209,13 +215,14 @@ int main(int argc, char *argv[])
args.AddOption(&device_config, "-d", "--device",
"Device configuration string, see Device::Configure().");
args.Parse();
if (slu_solver && mumps_solver)
if (slu_solver + mumps_solver + strumpack_solver > 1)
{
if (myid == 0)
cout << "WARNING: Both SuperLU and MUMPS have been selected,"
<< " please choose either one." << endl
cout << "WARNING: More than one of SuperLU, MUMPS, and STRUMPACK have"
<< " been selected, please choose only one." << endl
<< " Defaulting to SuperLU." << endl;
mumps_solver = false;
strumpack_solver = false;
}
if (iprob > 4) { iprob = 4; }
@@ -474,6 +481,24 @@ int main(int argc, char *argv[])
delete A;
}
#endif
#ifdef MFEM_USE_STRUMPACK
if (!pa && strumpack_solver)
{
HypreParMatrix *A = Ah.As<ComplexHypreParMatrix>()->GetSystemMatrix();
STRUMPACKRowLocMatrix SA(*A);
STRUMPACKSolver strumpack(MPI_COMM_WORLD, argc, argv);
strumpack.SetPrintFactorStatistics(false);
strumpack.SetPrintSolveStatistics(false);
strumpack.SetKrylovSolver(strumpack::KrylovSolver::DIRECT);
strumpack.SetReorderingStrategy(strumpack::ReorderingStrategy::METIS);
strumpack.SetMatching(strumpack::MatchingJob::NONE);
strumpack.SetCompression(strumpack::CompressionType::NONE);
strumpack.SetFromCommandLine();
strumpack.SetOperator(SA);
strumpack.Mult(B, X);
delete A;
}
#endif
#ifdef MFEM_USE_MUMPS
if (!pa && mumps_solver)
{
@@ -493,7 +518,7 @@ int main(int argc, char *argv[])
//
// In PML: 1/mu (abs(1/det(J) J^T J) Curl E, Curl F)
// + omega^2 * epsilon (abs(det(J) * (J^T J)^-1) * E, F)
if (pa || (!slu_solver && !mumps_solver))
if (pa || (!slu_solver && !mumps_solver && !strumpack_solver))
{
ConstantCoefficient absomeg(pow(omega, 2) * epsilon);
RestrictedCoefficient restr_absomeg(absomeg,attr);
+3 -2
View File
@@ -273,12 +273,13 @@ int main(int argc, char *argv[])
#ifdef MFEM_USE_STRUMPACK
if (sp_solver)
{
STRUMPACKSolver * strumpack = new STRUMPACKSolver(argc, argv, MPI_COMM_WORLD);
STRUMPACKSolver * strumpack = new STRUMPACKSolver(MPI_COMM_WORLD, argc, argv);
strumpack->SetPrintFactorStatistics(true);
strumpack->SetPrintSolveStatistics(false);
strumpack->SetKrylovSolver(strumpack::KrylovSolver::DIRECT);
strumpack->SetReorderingStrategy(strumpack::ReorderingStrategy::METIS);
strumpack->DisableMatching();
strumpack->SetMatching(strumpack::MatchingJob::NONE);
strumpack->SetCompression(strumpack::CompressionType::NONE);
strumpack->SetOperator(*Arow);
strumpack->SetFromCommandLine();
precond = strumpack;
-3
View File
@@ -96,9 +96,6 @@ set(SRCS
lor/lor_ads.cpp
lor/lor_ams.cpp
lor/lor_batched.cpp
lor/lor_h1.cpp
lor/lor_nd.cpp
lor/lor_rt.cpp
multigrid.cpp
nonlinearform.cpp
nonlinearform_ext.cpp
+85 -42
View File
@@ -101,6 +101,7 @@ BilinearForm::BilinearForm (FiniteElementSpace * f, BilinearForm * bf, int ps)
// Copy the pointers to the integrators
domain_integs = bf->domain_integs;
domain_integs_marker = bf->domain_integs_marker;
boundary_integs = bf->boundary_integs;
boundary_integs_marker = bf->boundary_integs_marker;
@@ -433,7 +434,6 @@ void BilinearForm::Assemble(int skip_zeros)
// Element-wise integration
for (int i = 0; i < fes -> GetNE(); i++)
{
doftrans = fes->GetElementVDofs(i, vdofs);
if (element_matrices)
{
elmat_p = &(*element_matrices)(i);
@@ -441,6 +441,9 @@ void BilinearForm::Assemble(int skip_zeros)
else
{
const int elem_attr = fes->GetMesh()->GetAttribute(i);
doftrans = fes->GetElementVDofs(i, vdofs);
eltrans = fes->GetElementTransformation(i);
elmat.SetSize(0);
for (int k = 0; k < domain_integs.Size(); k++)
{
@@ -448,9 +451,8 @@ void BilinearForm::Assemble(int skip_zeros)
(*(domain_integs_marker[k]))[elem_attr-1] == 1)
&& !domain_integs[k]->Patchwise())
{
const FiniteElement &fe = *fes->GetFE(i);
eltrans = fes->GetElementTransformation(i);
domain_integs[k]->AssembleElementMatrix(fe, *eltrans, elemmat);
domain_integs[k]->AssembleElementMatrix(*fes->GetFE(i),
*eltrans, elemmat);
if (elmat.Size() == 0)
{
elmat = elemmat;
@@ -1222,11 +1224,14 @@ MixedBilinearForm::MixedBilinearForm (FiniteElementSpace *tr_fes,
// Copy the pointers to the integrators
domain_integs = mbf->domain_integs;
boundary_integs = mbf->boundary_integs;
trace_face_integs = mbf->trace_face_integs;
boundary_trace_face_integs = mbf->boundary_trace_face_integs;
domain_integs_marker = mbf->domain_integs_marker;
boundary_integs = mbf->boundary_integs;
boundary_integs_marker = mbf->boundary_integs_marker;
trace_face_integs = mbf->trace_face_integs;
boundary_trace_face_integs = mbf->boundary_trace_face_integs;
boundary_trace_face_integs_marker = mbf->boundary_trace_face_integs_marker;
assembly = AssemblyLevel::LEGACY;
@@ -1349,6 +1354,14 @@ void MixedBilinearForm::GetBlocks(Array2D<SparseMatrix *> &blocks) const
void MixedBilinearForm::AddDomainIntegrator (BilinearFormIntegrator * bfi)
{
domain_integs.Append (bfi);
domain_integs_marker.Append(NULL); // NULL marker means apply everywhere
}
void MixedBilinearForm::AddDomainIntegrator (BilinearFormIntegrator * bfi,
Array<int> &elem_marker)
{
domain_integs.Append (bfi);
domain_integs_marker.Append(&elem_marker);
}
void MixedBilinearForm::AddBoundaryIntegrator (BilinearFormIntegrator * bfi)
@@ -1383,7 +1396,7 @@ void MixedBilinearForm::AddBdrTraceFaceIntegrator(BilinearFormIntegrator *bfi,
boundary_trace_face_integs_marker.Append(&bdr_marker);
}
void MixedBilinearForm::Assemble (int skip_zeros)
void MixedBilinearForm::Assemble(int skip_zeros)
{
if (ext)
{
@@ -1405,8 +1418,20 @@ void MixedBilinearForm::Assemble (int skip_zeros)
if (domain_integs.Size())
{
for (int k = 0; k < domain_integs.Size(); k++)
{
if (domain_integs_marker[k] != NULL)
{
MFEM_VERIFY(domain_integs_marker[k]->Size() ==
(mesh->attributes.Size() ? mesh->attributes.Max() : 0),
"invalid element marker for domain integrator #"
<< k << ", counting from zero");
}
}
for (int i = 0; i < test_fes -> GetNE(); i++)
{
const int elem_attr = mesh->GetAttribute(i);
dom_dof_trans = trial_fes -> GetElementVDofs (i, trial_vdofs);
ran_dof_trans = test_fes -> GetElementVDofs (i, test_vdofs);
eltrans = test_fes -> GetElementTransformation (i);
@@ -1415,10 +1440,14 @@ void MixedBilinearForm::Assemble (int skip_zeros)
elmat = 0.0;
for (int k = 0; k < domain_integs.Size(); k++)
{
domain_integs[k] -> AssembleElementMatrix2 (*trial_fes -> GetFE(i),
*test_fes -> GetFE(i),
*eltrans, elemmat);
elmat += elemmat;
if (domain_integs_marker[k] == NULL ||
(*(domain_integs_marker[k]))[elem_attr-1] == 1)
{
domain_integs[k] -> AssembleElementMatrix2 (*trial_fes -> GetFE(i),
*test_fes -> GetFE(i),
*eltrans, elemmat);
elmat += elemmat;
}
}
if (ran_dof_trans || dom_dof_trans)
{
@@ -1941,41 +1970,56 @@ void DiscreteLinearOperator::Assemble(int skip_zeros)
return;
}
Array<int> dom_vdofs, ran_vdofs;
ElementTransformation *T;
ElementTransformation *eltrans;
DofTransformation * dom_dof_trans;
DofTransformation * ran_dof_trans;
const FiniteElement *dom_fe, *ran_fe;
DenseMatrix totelmat, elmat;
DenseMatrix elmat;
Mesh *mesh = test_fes->GetMesh();
if (mat == NULL)
{
mat = new SparseMatrix(height, width);
}
if (domain_integs.Size() > 0)
if (domain_integs.Size())
{
for (int k = 0; k < domain_integs.Size(); k++)
{
if (domain_integs_marker[k] != NULL)
{
MFEM_VERIFY(domain_integs_marker[k]->Size() ==
(mesh->attributes.Size() ? mesh->attributes.Max() : 0),
"invalid element marker for domain integrator #"
<< k << ", counting from zero");
}
}
for (int i = 0; i < test_fes->GetNE(); i++)
{
dom_dof_trans = trial_fes->GetElementVDofs(i, dom_vdofs);
ran_dof_trans = test_fes->GetElementVDofs(i, ran_vdofs);
T = test_fes->GetElementTransformation(i);
dom_fe = trial_fes->GetFE(i);
ran_fe = test_fes->GetFE(i);
const int elem_attr = mesh->GetAttribute(i);
dom_dof_trans = trial_fes->GetElementVDofs(i, trial_vdofs);
ran_dof_trans = test_fes->GetElementVDofs(i, test_vdofs);
eltrans = test_fes->GetElementTransformation(i);
domain_integs[0]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T,
totelmat);
for (int j = 1; j < domain_integs.Size(); j++)
elmat.SetSize(test_vdofs.Size(), trial_vdofs.Size());
elmat = 0.0;
for (int k = 0; k < domain_integs.Size(); k++)
{
domain_integs[j]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T,
elmat);
totelmat += elmat;
if (domain_integs_marker[k] == NULL ||
(*(domain_integs_marker[k]))[elem_attr-1] == 1)
{
domain_integs[k]->AssembleElementMatrix2(*trial_fes->GetFE(i),
*test_fes->GetFE(i),
*eltrans, elemmat);
elmat += elemmat;
}
}
if (ran_dof_trans || dom_dof_trans)
{
TransformPrimal(ran_dof_trans, dom_dof_trans, totelmat);
TransformPrimal(ran_dof_trans, dom_dof_trans, elemmat);
}
mat->SetSubMatrix(ran_vdofs, dom_vdofs, totelmat, skip_zeros);
mat->SetSubMatrix(test_vdofs, trial_vdofs, elemmat, skip_zeros);
}
}
@@ -1984,21 +2028,20 @@ void DiscreteLinearOperator::Assemble(int skip_zeros)
const int nfaces = test_fes->GetMesh()->GetNumFaces();
for (int i = 0; i < nfaces; i++)
{
trial_fes->GetFaceVDofs(i, dom_vdofs);
test_fes->GetFaceVDofs(i, ran_vdofs);
T = test_fes->GetMesh()->GetFaceTransformation(i);
dom_fe = trial_fes->GetFaceElement(i);
ran_fe = test_fes->GetFaceElement(i);
trial_fes->GetFaceVDofs(i, trial_vdofs);
test_fes->GetFaceVDofs(i, test_vdofs);
eltrans = test_fes->GetMesh()->GetFaceTransformation(i);
trace_face_integs[0]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T,
totelmat);
for (int j = 1; j < trace_face_integs.Size(); j++)
elmat.SetSize(test_vdofs.Size(), trial_vdofs.Size());
elmat = 0.0;
for (int k = 0; k < trace_face_integs.Size(); k++)
{
trace_face_integs[j]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T,
elmat);
totelmat += elmat;
trace_face_integs[k]->AssembleElementMatrix2(*trial_fes->GetFaceElement(i),
*test_fes->GetFaceElement(i),
*eltrans, elemmat);
elmat += elemmat;
}
mat->SetSubMatrix(ran_vdofs, dom_vdofs, totelmat, skip_zeros);
mat->SetSubMatrix(test_vdofs, trial_vdofs, elmat, skip_zeros);
}
}
}
+22 -7
View File
@@ -100,7 +100,7 @@ protected:
/// Includes all by default.
/// 0 - ignore attribute
/// 1 - include attribute
Array<Array<int>*> domain_integs_marker;
Array<Array<int>*> domain_integs_marker; ///< Entries are not owned.
/// Set of Boundary Integrators to be applied.
Array<BilinearFormIntegrator*> boundary_integs;
@@ -722,10 +722,13 @@ protected:
/// Domain integrators.
Array<BilinearFormIntegrator*> domain_integs;
/// Entries are not owned.
Array<Array<int>*> domain_integs_marker;
/// Boundary integrators.
Array<BilinearFormIntegrator*> boundary_integs;
Array<Array<int>*> boundary_integs_marker; ///< Entries are not owned.
/// Entries are not owned.
Array<Array<int>*> boundary_integs_marker;
/// Trace face (skeleton) integrators.
Array<BilinearFormIntegrator*> trace_face_integs;
@@ -805,12 +808,16 @@ public:
/// Adds a domain integrator. Assumes ownership of @a bfi.
void AddDomainIntegrator(BilinearFormIntegrator *bfi);
/// Adds a domain integrator. Assumes ownership of @a bfi.
void AddDomainIntegrator(BilinearFormIntegrator *bfi,
Array<int> &elem_marker);
/// Adds a boundary integrator. Assumes ownership of @a bfi.
void AddBoundaryIntegrator(BilinearFormIntegrator *bfi);
/// Adds a boundary integrator. Assumes ownership of @a bfi.
void AddBoundaryIntegrator (BilinearFormIntegrator * bfi,
Array<int> &bdr_marker);
void AddBoundaryIntegrator(BilinearFormIntegrator * bfi,
Array<int> &bdr_marker);
/** @brief Add a trace face integrator. Assumes ownership of @a bfi.
@@ -820,14 +827,18 @@ public:
void AddTraceFaceIntegrator(BilinearFormIntegrator *bfi);
/// Adds a boundary trace face integrator. Assumes ownership of @a bfi.
void AddBdrTraceFaceIntegrator (BilinearFormIntegrator * bfi);
void AddBdrTraceFaceIntegrator(BilinearFormIntegrator * bfi);
/// Adds a boundary trace face integrator. Assumes ownership of @a bfi.
void AddBdrTraceFaceIntegrator (BilinearFormIntegrator * bfi,
Array<int> &bdr_marker);
void AddBdrTraceFaceIntegrator(BilinearFormIntegrator * bfi,
Array<int> &bdr_marker);
/// Access all integrators added with AddDomainIntegrator().
Array<BilinearFormIntegrator*> *GetDBFI() { return &domain_integs; }
/** @brief Access all domain markers added with AddDomainIntegrator().
If no marker was specified when the integrator was added, the
corresponding pointer (to Array<int>) will be NULL. */
Array<Array<int>*> *GetDBFI_Marker() { return &domain_integs_marker; }
/// Access all integrators added with AddBoundaryIntegrator().
Array<BilinearFormIntegrator*> *GetBBFI() { return &boundary_integs; }
@@ -1065,6 +1076,9 @@ public:
/// Adds a domain interpolator. Assumes ownership of @a di.
void AddDomainInterpolator(DiscreteInterpolator *di)
{ AddDomainIntegrator(di); }
void AddDomainInterpolator(DiscreteInterpolator *di,
Array<int> &elem_marker)
{ AddDomainIntegrator(di, elem_marker); }
/// Adds a trace face interpolator. Assumes ownership of @a di.
void AddTraceFaceInterpolator(DiscreteInterpolator *di)
@@ -1072,6 +1086,7 @@ public:
/// Access all interpolators added with AddDomainInterpolator().
Array<BilinearFormIntegrator*> *GetDI() { return &domain_integs; }
Array<Array<int>*> *GetDI_Marker() { return &domain_integs_marker; }
/// Set the desired assembly level. The default is AssemblyLevel::FULL.
/** This method must be called before assembly. */
+1 -1
View File
@@ -303,7 +303,7 @@ void PABilinearFormExtension::SetupRestrictionOperators(const L2FaceValues m)
std::unordered_map<int,int> f_to_be;
for (int i = 0; i < mesh.GetNBE(); ++i)
{
const int f = mesh.GetBdrElementEdgeIndex(i);
const int f = mesh.GetBdrElementFaceIndex(i);
f_to_be[f] = i;
}
const int nf_bdr = trial_fes->GetNFbyType(FaceType::Boundary);
+169 -172
View File
@@ -14,175 +14,166 @@
namespace mfem
{
void DofTransformation::TransformPrimal(double *v) const
{
MFEM_ASSERT(dof_trans_,
"DofTransformation has no local transformation, call "
"SetDofTransformation first!");
int size = dof_trans_->Size();
if (vdim_ == 1 || (Ordering::Type)ordering_ == Ordering::byNODES)
{
for (int i=0; i<vdim_; i++)
{
dof_trans_->TransformPrimal(Fo_, &v[i*size]);
}
}
else
{
Vector vec(size);
for (int i=0; i<vdim_; i++)
{
for (int j=0; j<size; j++)
{
vec(j) = v[j*vdim_+i];
}
dof_trans_->TransformPrimal(Fo_, vec);
for (int j=0; j<size; j++)
{
v[j*vdim_+i] = vec(j);
}
}
}
}
void DofTransformation::InvTransformPrimal(double *v) const
{
MFEM_ASSERT(dof_trans_,
"DofTransformation has no local transformation, call "
"SetDofTransformation first!");
int size = dof_trans_->Height();
if (vdim_ == 1 || (Ordering::Type)ordering_ == Ordering::byNODES)
{
for (int i=0; i<vdim_; i++)
{
dof_trans_->InvTransformPrimal(Fo_, &v[i*size]);
}
}
else
{
Vector vec(size);
for (int i=0; i<vdim_; i++)
{
for (int j=0; j<size; j++)
{
vec(j) = v[j*vdim_+i];
}
dof_trans_->InvTransformPrimal(Fo_, vec);
for (int j=0; j<size; j++)
{
v[j*vdim_+i] = vec(j);
}
}
}
}
void DofTransformation::TransformDual(double *v) const
{
MFEM_ASSERT(dof_trans_,
"DofTransformation has no local transformation, call "
"SetDofTransformation first!");
int size = dof_trans_->Size();
if (vdim_ == 1 || (Ordering::Type)ordering_ == Ordering::byNODES)
{
for (int i=0; i<vdim_; i++)
{
dof_trans_->TransformDual(Fo_, &v[i*size]);
}
}
else
{
Vector vec(size);
for (int i=0; i<vdim_; i++)
{
for (int j=0; j<size; j++)
{
vec(j) = v[j*vdim_+i];
}
dof_trans_->TransformDual(Fo_, vec);
for (int j=0; j<size; j++)
{
v[j*vdim_+i] = vec(j);
}
}
}
}
void DofTransformation::InvTransformDual(double *v) const
{
MFEM_ASSERT(dof_trans_,
"DofTransformation has no local transformation, call "
"SetDofTransformation first!");
int size = dof_trans_->Size();
if (vdim_ == 1 || (Ordering::Type)ordering_ == Ordering::byNODES)
{
for (int i=0; i<vdim_; i++)
{
dof_trans_->InvTransformDual(Fo_, &v[i*size]);
}
}
else
{
Vector vec(size);
for (int i=0; i<vdim_; i++)
{
for (int j=0; j<size; j++)
{
vec(j) = v[j*vdim_+i];
}
dof_trans_->InvTransformDual(Fo_, vec);
for (int j=0; j<size; j++)
{
v[j*vdim_+i] = vec(j);
}
}
}
}
void TransformPrimal(const DofTransformation *ran_dof_trans,
const DofTransformation *dom_dof_trans,
DenseMatrix &elmat)
{
if (ran_dof_trans && dom_dof_trans)
{
ran_dof_trans->TransformPrimalCols(elmat);
dom_dof_trans->TransformDualRows(elmat);
}
else if (ran_dof_trans)
// No action if both transformations are NULL
if (ran_dof_trans)
{
ran_dof_trans->TransformPrimalCols(elmat);
}
else if (dom_dof_trans)
if (dom_dof_trans)
{
dom_dof_trans->TransformDualRows(elmat);
}
else
{
// If both transformations are NULL this function should not be called
}
}
void TransformDual(const DofTransformation *ran_dof_trans,
const DofTransformation *dom_dof_trans,
DenseMatrix &elmat)
{
if (ran_dof_trans && dom_dof_trans)
{
ran_dof_trans->TransformDualCols(elmat);
dom_dof_trans->TransformDualRows(elmat);
}
else if (ran_dof_trans)
// No action if both transformations are NULL
if (ran_dof_trans)
{
ran_dof_trans->TransformDualCols(elmat);
}
else if (dom_dof_trans)
if (dom_dof_trans)
{
dom_dof_trans->TransformDualRows(elmat);
}
else
{
// If both transformations are NULL this function should not be called
}
}
void StatelessVDofTransformation::TransformPrimal(const Array<int> & face_ori,
double *v) const
{
int size = sdoftrans_->Size();
if ((Ordering::Type)ordering_ == Ordering::byNODES || vdim_ == 1)
{
for (int i=0; i<vdim_; i++)
{
sdoftrans_->TransformPrimal(face_ori, &v[i*size]);
}
}
else
{
Vector vec(size);
for (int i=0; i<vdim_; i++)
{
for (int j=0; j<size; j++)
{
vec(j) = v[j*vdim_+i];
}
sdoftrans_->TransformPrimal(face_ori, vec);
for (int j=0; j<size; j++)
{
v[j*vdim_+i] = vec(j);
}
}
}
}
void StatelessVDofTransformation::InvTransformPrimal(
const Array<int> & face_ori,
double *v) const
{
int size = sdoftrans_->Height();
if ((Ordering::Type)ordering_ == Ordering::byNODES)
{
for (int i=0; i<vdim_; i++)
{
sdoftrans_->InvTransformPrimal(face_ori, &v[i*size]);
}
}
else
{
Vector vec(size);
for (int i=0; i<vdim_; i++)
{
for (int j=0; j<size; j++)
{
vec(j) = v[j*vdim_+i];
}
sdoftrans_->InvTransformPrimal(face_ori, vec);
for (int j=0; j<size; j++)
{
v[j*vdim_+i] = vec(j);
}
}
}
}
void StatelessVDofTransformation::TransformDual(const Array<int> & face_ori,
double *v) const
{
int size = sdoftrans_->Size();
if ((Ordering::Type)ordering_ == Ordering::byNODES)
{
for (int i=0; i<vdim_; i++)
{
sdoftrans_->TransformDual(face_ori, &v[i*size]);
}
}
else
{
Vector vec(size);
for (int i=0; i<vdim_; i++)
{
for (int j=0; j<size; j++)
{
vec(j) = v[j*vdim_+i];
}
sdoftrans_->TransformDual(face_ori, vec);
for (int j=0; j<size; j++)
{
v[j*vdim_+i] = vec(j);
}
}
}
}
void StatelessVDofTransformation::InvTransformDual(const Array<int> & face_ori,
double *v) const
{
int size = sdoftrans_->Size();
if ((Ordering::Type)ordering_ == Ordering::byNODES)
{
for (int i=0; i<vdim_; i++)
{
sdoftrans_->InvTransformDual(face_ori, &v[i*size]);
}
}
else
{
Vector vec(size);
for (int i=0; i<vdim_; i++)
{
for (int j=0; j<size; j++)
{
vec(j) = v[j*vdim_+i];
}
sdoftrans_->InvTransformDual(face_ori, vec);
for (int j=0; j<size; j++)
{
v[j*vdim_+i] = vec(j);
}
}
}
}
// ordering (i0j0, i1j0, i0j1, i1j1), each row is a column major matrix
const double ND_StatelessDofTransformation::T_data[24] =
const double ND_DofTransformation::T_data[24] =
{
1.0, 0.0, 0.0, 1.0,
-1.0, -1.0, 0.0, 1.0,
@@ -192,11 +183,11 @@ const double ND_StatelessDofTransformation::T_data[24] =
0.0, 1.0, 1.0, 0.0
};
const DenseTensor ND_StatelessDofTransformation
::T(const_cast<double*>(ND_StatelessDofTransformation::T_data), 2, 2, 6);
const DenseTensor ND_DofTransformation
::T(const_cast<double *>(ND_DofTransformation::T_data), 2, 2, 6);
// ordering (i0j0, i1j0, i0j1, i1j1), each row is a column major matrix
const double ND_StatelessDofTransformation::TInv_data[24] =
const double ND_DofTransformation::TInv_data[24] =
{
1.0, 0.0, 0.0, 1.0,
-1.0, -1.0, 0.0, 1.0,
@@ -206,12 +197,11 @@ const double ND_StatelessDofTransformation::TInv_data[24] =
0.0, 1.0, 1.0, 0.0
};
const DenseTensor ND_StatelessDofTransformation
::TInv(const_cast<double*>(TInv_data), 2, 2, 6);
const DenseTensor ND_DofTransformation
::TInv(const_cast<double *>(TInv_data), 2, 2, 6);
ND_StatelessDofTransformation::ND_StatelessDofTransformation(int size, int p,
int num_edges,
int num_tri_faces)
ND_DofTransformation::ND_DofTransformation(int size, int p, int num_edges,
int num_tri_faces)
: StatelessDofTransformation(size)
, order(p)
, nedofs(p)
@@ -221,18 +211,19 @@ ND_StatelessDofTransformation::ND_StatelessDofTransformation(int size, int p,
{
}
void ND_StatelessDofTransformation::TransformPrimal(const Array<int> & Fo,
double *v) const
void ND_DofTransformation::TransformPrimal(const Array<int> & Fo,
double *v) const
{
// Return immediately when no face DoFs are present
if (nfdofs < 2) { return; }
if (IsIdentity()) { return; }
MFEM_VERIFY(Fo.Size() >= nfaces,
"Face orientation array is shorter than the number of faces in "
"ND_StatelessDofTransformation");
"ND_DofTransformation");
double data[2];
Vector v2(data, 2);
DenseMatrix T2;
// Transform face DoFs
for (int f=0; f<nfaces; f++)
@@ -240,23 +231,25 @@ void ND_StatelessDofTransformation::TransformPrimal(const Array<int> & Fo,
for (int i=0; i<nfdofs/2; i++)
{
v2 = &v[nedges*nedofs + f*nfdofs + 2*i];
T(Fo[f]).Mult(v2, &v[nedges*nedofs + f*nfdofs + 2*i]);
T2.UseExternalData(const_cast<double *>(T.GetData(Fo[f])), 2, 2);
T2.Mult(v2, &v[nedges*nedofs + f*nfdofs + 2*i]);
}
}
}
void ND_StatelessDofTransformation::InvTransformPrimal(const Array<int> & Fo,
double *v) const
void ND_DofTransformation::InvTransformPrimal(const Array<int> & Fo,
double *v) const
{
// Return immediately when no face DoFs are present
if (nfdofs < 2) { return; }
if (IsIdentity()) { return; }
MFEM_VERIFY(Fo.Size() >= nfaces,
"Face orientation array is shorter than the number of faces in "
"ND_StatelessDofTransformation");
"ND_DofTransformation");
double data[2];
Vector v2(data, 2);
DenseMatrix T2Inv;
// Transform face DoFs
for (int f=0; f<nfaces; f++)
@@ -264,23 +257,24 @@ void ND_StatelessDofTransformation::InvTransformPrimal(const Array<int> & Fo,
for (int i=0; i<nfdofs/2; i++)
{
v2 = &v[nedges*nedofs + f*nfdofs + 2*i];
TInv(Fo[f]).Mult(v2, &v[nedges*nedofs + f*nfdofs + 2*i]);
T2Inv.UseExternalData(const_cast<double *>(TInv.GetData(Fo[f])), 2, 2);
T2Inv.Mult(v2, &v[nedges*nedofs + f*nfdofs + 2*i]);
}
}
}
void ND_StatelessDofTransformation::TransformDual(const Array<int> & Fo,
double *v) const
void ND_DofTransformation::TransformDual(const Array<int> & Fo, double *v) const
{
// Return immediately when no face DoFs are present
if (nfdofs < 2) { return; }
if (IsIdentity()) { return; }
MFEM_VERIFY(Fo.Size() >= nfaces,
"Face orientation array is shorter than the number of faces in "
"ND_StatelessDofTransformation");
"ND_DofTransformation");
double data[2];
Vector v2(data, 2);
DenseMatrix T2Inv;
// Transform face DoFs
for (int f=0; f<nfaces; f++)
@@ -288,23 +282,25 @@ void ND_StatelessDofTransformation::TransformDual(const Array<int> & Fo,
for (int i=0; i<nfdofs/2; i++)
{
v2 = &v[nedges*nedofs + f*nfdofs + 2*i];
TInv(Fo[f]).MultTranspose(v2, &v[nedges*nedofs + f*nfdofs + 2*i]);
T2Inv.UseExternalData(const_cast<double *>(TInv.GetData(Fo[f])), 2, 2);
T2Inv.MultTranspose(v2, &v[nedges*nedofs + f*nfdofs + 2*i]);
}
}
}
void ND_StatelessDofTransformation::InvTransformDual(const Array<int> & Fo,
double *v) const
void ND_DofTransformation::InvTransformDual(const Array<int> & Fo,
double *v) const
{
// Return immediately when no face DoFs are present
if (nfdofs < 2) { return; }
if (IsIdentity()) { return; }
MFEM_VERIFY(Fo.Size() >= nfaces,
"Face orientation array is shorter than the number of faces in "
"ND_StatelessDofTransformation");
"ND_DofTransformation");
double data[2];
Vector v2(data, 2);
DenseMatrix T2;
// Transform face DoFs
for (int f=0; f<nfaces; f++)
@@ -312,7 +308,8 @@ void ND_StatelessDofTransformation::InvTransformDual(const Array<int> & Fo,
for (int i=0; i<nfdofs/2; i++)
{
v2 = &v[nedges*nedofs + f*nfdofs + 2*i];
T(Fo[f]).MultTranspose(v2, &v[nedges*nedofs + f*nfdofs + 2*i]);
T2.UseExternalData(const_cast<double *>(T.GetData(Fo[f])), 2, 2);
T2.MultTranspose(v2, &v[nedges*nedofs + f*nfdofs + 2*i]);
}
}
}
+77 -251
View File
@@ -80,6 +80,9 @@ public:
inline int Width() const { return size_; }
inline int NumCols() const { return size_; }
/// If the DofTransformation performs no transformation
virtual bool IsIdentity() const = 0;
/** Transform local DoFs to align with the global DoFs. For example, this
transformation can be used to map the local vector computed by
FiniteElement::Project() to the transformed vector stored within a
@@ -115,6 +118,8 @@ public:
inline void InvTransformDual(const Array<int> & face_orientation,
Vector &v) const
{ InvTransformDual(face_orientation, v.GetData()); }
virtual ~StatelessDofTransformation() = default;
};
/** The DofTransformation class is an extension of the
@@ -133,35 +138,76 @@ public:
transferring finite element degrees of freedom between different meshes.
For examples of its use see the TransferMap used by the SubMesh class.
*/
class DofTransformation : virtual public StatelessDofTransformation
class DofTransformation
{
protected:
Array<int> Fo;
DofTransformation(int size)
: StatelessDofTransformation(size) {}
Array<int> Fo_;
const StatelessDofTransformation * dof_trans_;
int vdim_;
int ordering_;
public:
/** @brief Default constructor which requires that SetDofTransformation be
called before use. */
DofTransformation(int vdim = 1, int ordering = 0)
: dof_trans_(NULL)
, vdim_(vdim)
, ordering_(ordering)
{}
/// Constructor with a known StatelessDofTransformation
DofTransformation(const StatelessDofTransformation & dof_trans,
int vdim = 1, int ordering = 0)
: dof_trans_(&dof_trans)
, vdim_(vdim)
, ordering_(ordering)
{}
/** @brief Configure the transformation using face orientations for the
current element. */
/// The face_orientation array can be obtained from Mesh::GetElementFaces.
inline void SetFaceOrientations(const Array<int> & face_orientation)
{ Fo = face_orientation; }
inline void SetFaceOrientations(const Array<int> & Fo)
{ Fo_ = Fo; }
inline const Array<int> & GetFaceOrientations() const { return Fo; }
/// Return the face orientations for the current element
inline const Array<int> & GetFaceOrientations() const { return Fo_; }
using StatelessDofTransformation::TransformPrimal;
using StatelessDofTransformation::InvTransformPrimal;
using StatelessDofTransformation::TransformDual;
using StatelessDofTransformation::InvTransformDual;
/// Set or change the nested StatelessDofTransformation object
inline void SetDofTransformation(const StatelessDofTransformation & dof_trans)
{
dof_trans_ = &dof_trans;
}
inline void SetDofTransformation(const StatelessDofTransformation * dof_trans)
{
dof_trans_ = dof_trans;
}
/// Return the nested StatelessDofTransformation object
inline const StatelessDofTransformation * GetDofTransformation() const
{ return dof_trans_; }
/// Set or change the vdim and ordering parameter
inline void SetVDim(int vdim = 1, int ordering = 0)
{
vdim_ = vdim;
ordering_ = ordering;
}
/// Return the current vdim value
inline int GetVDim() const { return vdim_; }
inline int Size() const { return dof_trans_->Size(); }
inline int Height() const { return dof_trans_->Height(); }
inline int NumRows() const { return dof_trans_->NumRows(); }
inline int Width() const { return dof_trans_->Width(); }
inline int NumCols() const { return dof_trans_->NumCols(); }
inline bool IsIdentity() const { return dof_trans_->IsIdentity(); }
/** Transform local DoFs to align with the global DoFs. For example, this
transformation can be used to map the local vector computed by
FiniteElement::Project() to the transformed vector stored within a
GridFunction object. */
inline void TransformPrimal(double *v) const
{ TransformPrimal(Fo, v); }
void TransformPrimal(double *v) const;
inline void TransformPrimal(Vector &v) const
{ TransformPrimal(v.GetData()); }
@@ -179,21 +225,18 @@ public:
transform the vector obtained using GridFunction::GetSubVector before it
can be used to compute a local interpolation.
*/
inline void InvTransformPrimal(double *v) const
{ InvTransformPrimal(Fo, v); }
void InvTransformPrimal(double *v) const;
inline void InvTransformPrimal(Vector &v) const
{ InvTransformPrimal(v.GetData()); }
/** Transform dual DoFs as computed by a LinearFormIntegrator before summing
into a LinearForm object. */
inline void TransformDual(double *v) const
{ TransformDual(Fo, v); }
void TransformDual(double *v) const;
inline void TransformDual(Vector &v) const
{ TransformDual(v.GetData()); }
/** Inverse Transform dual DoFs */
inline void InvTransformDual(double *v) const
{ InvTransformDual(Fo, v); }
void InvTransformDual(double *v) const;
inline void InvTransformDual(Vector &v) const
{ InvTransformDual(v.GetData()); }
@@ -225,8 +268,6 @@ public:
TransformDual(V.GetColumn(c));
}
}
virtual ~DofTransformation() = default;
};
/** Transform a matrix of DoFs entries from different finite element spaces as
@@ -245,145 +286,6 @@ void TransformDual(const DofTransformation *ran_dof_trans,
const DofTransformation *dom_dof_trans,
DenseMatrix &elmat);
/** The StatelessVDofTransformation class implements a nested transformation
where an arbitrary StatelessDofTransformation is replicated with a
vdim >= 1.
*/
class StatelessVDofTransformation : virtual public StatelessDofTransformation
{
protected:
int vdim_;
int ordering_;
StatelessDofTransformation * sdoftrans_;
public:
/** @brief Default constructor which requires that SetDofTransformation be
called before use. */
StatelessVDofTransformation(int vdim = 1, int ordering = 0)
: StatelessDofTransformation(0)
, vdim_(vdim)
, ordering_(ordering)
, sdoftrans_(NULL)
{}
/// Constructor with a known StatelessDofTransformation
StatelessVDofTransformation(StatelessDofTransformation & doftrans,
int vdim = 1,
int ordering = 0)
: StatelessDofTransformation(vdim * doftrans.Size())
, vdim_(vdim)
, ordering_(ordering)
, sdoftrans_(&doftrans)
{}
/// Set or change the vdim parameter
inline void SetVDim(int vdim)
{
vdim_ = vdim;
if (sdoftrans_)
{
size_ = vdim_ * sdoftrans_->Size();
}
}
/// Return the current vdim value
inline int GetVDim() const { return vdim_; }
/// Set or change the nested StatelessDofTransformation object
inline void SetDofTransformation(StatelessDofTransformation & doftrans)
{
size_ = vdim_ * doftrans.Size();
sdoftrans_ = &doftrans;
}
/// Return the nested StatelessDofTransformation object
inline StatelessDofTransformation * GetDofTransformation() const
{ return sdoftrans_; }
using StatelessDofTransformation::TransformPrimal;
using StatelessDofTransformation::InvTransformPrimal;
using StatelessDofTransformation::TransformDual;
using StatelessDofTransformation::InvTransformDual;
/** Specializations of these base class methods which account for the vdim
and ordering of the full set of DoFs.
*/
void TransformPrimal(const Array<int> & face_ori, double *v) const;
void InvTransformPrimal(const Array<int> & face_ori, double *v) const;
void TransformDual(const Array<int> & face_ori, double *v) const;
void InvTransformDual(const Array<int> & face_ori, double *v) const;
};
/** The VDofTransformation class implements a nested transformation where an
arbitrary DofTransformation is replicated with a vdim >= 1.
*/
class VDofTransformation : public StatelessVDofTransformation,
public DofTransformation
{
protected:
DofTransformation * doftrans_;
public:
/** @brief Default constructor which requires that SetDofTransformation be
called before use. */
VDofTransformation(int vdim = 1, int ordering = 0)
: StatelessDofTransformation(0)
, StatelessVDofTransformation(vdim, ordering)
, DofTransformation(0)
, doftrans_(NULL)
{}
/// Constructor with a known DofTransformation
/// @note The face orientations in @a doftrans will be copied into the
/// new VDofTransformation object.
VDofTransformation(DofTransformation & doftrans, int vdim = 1,
int ordering = 0)
: StatelessDofTransformation(vdim * doftrans.Size())
, StatelessVDofTransformation(doftrans, vdim, ordering)
, DofTransformation(vdim * doftrans.Size())
, doftrans_(&doftrans)
{
DofTransformation::SetFaceOrientations(doftrans.GetFaceOrientations());
}
using StatelessVDofTransformation::SetDofTransformation;
/// Set or change the nested DofTransformation object
/// @note The face orientations in @a doftrans will be copied into the
/// VDofTransformation object.
void SetDofTransformation(DofTransformation & doftrans)
{
doftrans_ = &doftrans;
StatelessVDofTransformation::SetDofTransformation(doftrans);
DofTransformation::SetFaceOrientations(doftrans.GetFaceOrientations());
}
/// Return the nested DofTransformation object
inline DofTransformation * GetDofTransformation() const { return doftrans_; }
/// Set new face orientations in both the VDofTransformation and the
/// DofTransformation contained within (if there is one).
inline void SetFaceOrientations(const Array<int> & face_orientation)
{
DofTransformation::SetFaceOrientations(face_orientation);
if (doftrans_) { doftrans_->SetFaceOrientations(face_orientation); }
}
using DofTransformation::TransformPrimal;
using DofTransformation::InvTransformPrimal;
using DofTransformation::TransformDual;
using DofTransformation::InvTransformDual;
inline void TransformPrimal(double *v) const
{ TransformPrimal(Fo, v); }
inline void InvTransformPrimal(double *v) const
{ InvTransformPrimal(Fo, v); }
inline void TransformDual(double *v) const
{ TransformDual(Fo, v); }
inline void InvTransformDual(double *v) const
{ InvTransformDual(Fo, v); }
};
/** Abstract base class for high-order Nedelec spaces on elements with
triangular faces.
@@ -396,7 +298,7 @@ public:
be accessed as DenseMatrices using the GetFaceTransform() and
GetFaceInverseTransform() methods.
*/
class ND_StatelessDofTransformation : virtual public StatelessDofTransformation
class ND_DofTransformation : public StatelessDofTransformation
{
private:
static const double T_data[24];
@@ -410,8 +312,7 @@ protected:
const int nedges; // number of edges per element
const int nfaces; // number of triangular faces per element
ND_StatelessDofTransformation(int size, int order,
int num_edges, int num_tri_faces);
ND_DofTransformation(int size, int order, int num_edges, int num_tri_faces);
public:
// Return the 2x2 transformation operator for the given face orientation
@@ -421,116 +322,41 @@ public:
static const DenseMatrix & GetFaceInverseTransform(int ori)
{ return TInv(ori); }
void TransformPrimal(const Array<int> & face_orientation,
double *v) const;
bool IsIdentity() const override { return nfdofs < 2; }
void InvTransformPrimal(const Array<int> & face_orientation,
double *v) const;
void TransformDual(const Array<int> & face_orientation,
double *v) const;
void InvTransformDual(const Array<int> & face_orientation,
double *v) const;
void TransformPrimal(const Array<int> & Fo, double *v) const override;
void InvTransformPrimal(const Array<int> & Fo, double *v) const override;
void TransformDual(const Array<int> & Fo, double *v) const override;
void InvTransformDual(const Array<int> & Fo, double *v) const override;
};
/// Stateless DoF transformation implementation for the Nedelec basis on
/// triangles
class ND_TriStatelessDofTransformation : public ND_StatelessDofTransformation
{
public:
ND_TriStatelessDofTransformation(int order)
: StatelessDofTransformation(order*(order + 2))
, ND_StatelessDofTransformation(order*(order + 2), order, 3, 1)
{}
};
/// DoF transformation implementation for the Nedelec basis on triangles
class ND_TriDofTransformation : public DofTransformation,
public ND_TriStatelessDofTransformation
class ND_TriDofTransformation : public ND_DofTransformation
{
public:
ND_TriDofTransformation(int order)
: StatelessDofTransformation(order*(order + 2))
, DofTransformation(order*(order + 2))
, ND_TriStatelessDofTransformation(order)
{}
using DofTransformation::TransformPrimal;
using DofTransformation::InvTransformPrimal;
using DofTransformation::TransformDual;
using DofTransformation::InvTransformDual;
using ND_TriStatelessDofTransformation::TransformPrimal;
using ND_TriStatelessDofTransformation::InvTransformPrimal;
using ND_TriStatelessDofTransformation::TransformDual;
using ND_TriStatelessDofTransformation::InvTransformDual;
};
/// DoF transformation implementation for the Nedelec basis on tetrahedra
class ND_TetStatelessDofTransformation : public ND_StatelessDofTransformation
{
public:
ND_TetStatelessDofTransformation(int order)
: StatelessDofTransformation(order*(order + 2)*(order + 3)/2)
, ND_StatelessDofTransformation(order*(order + 2)*(order + 3)/2, order,
6, 4)
: ND_DofTransformation(order*(order + 2), order, 3, 1)
{}
};
/// DoF transformation implementation for the Nedelec basis on tetrahedra
class ND_TetDofTransformation : public DofTransformation,
public ND_TetStatelessDofTransformation
class ND_TetDofTransformation : public ND_DofTransformation
{
public:
ND_TetDofTransformation(int order)
: StatelessDofTransformation(order*(order + 2)*(order + 3)/2)
, DofTransformation(order*(order + 2)*(order + 3)/2)
, ND_TetStatelessDofTransformation(order)
{}
using DofTransformation::TransformPrimal;
using DofTransformation::InvTransformPrimal;
using DofTransformation::TransformDual;
using DofTransformation::InvTransformDual;
using ND_TetStatelessDofTransformation::TransformPrimal;
using ND_TetStatelessDofTransformation::InvTransformPrimal;
using ND_TetStatelessDofTransformation::TransformDual;
using ND_TetStatelessDofTransformation::InvTransformDual;
};
/// DoF transformation implementation for the Nedelec basis on wedge elements
class ND_WedgeStatelessDofTransformation : public ND_StatelessDofTransformation
{
public:
ND_WedgeStatelessDofTransformation(int order)
: StatelessDofTransformation(3 * order * ((order + 1) * (order + 2))/2)
, ND_StatelessDofTransformation(3 * order * ((order + 1) * (order + 2))/2,
order, 9, 2)
: ND_DofTransformation(order*(order + 2)*(order + 3)/2, order, 6, 4)
{}
};
/// DoF transformation implementation for the Nedelec basis on wedge elements
class ND_WedgeDofTransformation : public DofTransformation,
public ND_WedgeStatelessDofTransformation
class ND_WedgeDofTransformation : public ND_DofTransformation
{
public:
ND_WedgeDofTransformation(int order)
: StatelessDofTransformation(3 * order * ((order + 1) * (order + 2))/2)
, DofTransformation(3 * order * ((order + 1) * (order + 2))/2)
, ND_WedgeStatelessDofTransformation(order)
: ND_DofTransformation(3 * order * ((order + 1) * (order + 2))/2,
order, 9, 2)
{}
using DofTransformation::TransformPrimal;
using DofTransformation::InvTransformPrimal;
using DofTransformation::TransformDual;
using DofTransformation::InvTransformDual;
using ND_WedgeStatelessDofTransformation::TransformPrimal;
using ND_WedgeStatelessDofTransformation::InvTransformPrimal;
using ND_WedgeStatelessDofTransformation::TransformDual;
using ND_WedgeStatelessDofTransformation::InvTransformDual;
};
} // namespace mfem
+1 -1
View File
@@ -596,7 +596,7 @@ public:
/** @brief Return a DoF transformation object for this particular type of
basis.
*/
virtual StatelessDofTransformation * GetDofTransformation() const
virtual const StatelessDofTransformation *GetDofTransformation() const
{ return NULL; }
/// Deconstruct the FiniteElement
+1 -1
View File
@@ -6031,7 +6031,7 @@ void RT0PyrFiniteElement::CalcVShape(const IntegrationPoint &ip,
shape(1,2) = z;
shape(2,0) = x * (2.0 - z) * ozi;
shape(2,1) = - y * z * ozi;;
shape(2,1) = - y * z * ozi;
shape(2,2) = z;
shape(3,0) = - x * z * ozi;
+6 -6
View File
@@ -179,7 +179,7 @@ class ND_TetrahedronElement : public VectorFiniteElement
Array<int> dof2tk;
DenseMatrixInverse Ti;
mutable ND_TetStatelessDofTransformation doftrans;
ND_TetDofTransformation doftrans;
public:
/// Construct the ND_TetrahedronElement of order @a p
@@ -201,7 +201,7 @@ public:
ElementTransformation &Trans,
DenseMatrix &I) const
{ LocalInterpolation_ND(CheckVectorFE(fe), tk, dof2tk, Trans, I); }
virtual StatelessDofTransformation * GetDofTransformation() const
virtual const StatelessDofTransformation *GetDofTransformation() const
{ return &doftrans; }
using FiniteElement::Project;
virtual void Project(VectorCoefficient &vc,
@@ -242,7 +242,7 @@ class ND_TriangleElement : public VectorFiniteElement
Array<int> dof2tk;
DenseMatrixInverse Ti;
mutable ND_TriStatelessDofTransformation doftrans;
ND_TriDofTransformation doftrans;
public:
/// Construct the ND_TriangleElement of order @a p
@@ -264,7 +264,7 @@ public:
ElementTransformation &Trans,
DenseMatrix &I) const
{ LocalInterpolation_ND(CheckVectorFE(fe), tk, dof2tk, Trans, I); }
virtual StatelessDofTransformation * GetDofTransformation() const
virtual const StatelessDofTransformation *GetDofTransformation() const
{ return &doftrans; }
using FiniteElement::Project;
virtual void Project(VectorCoefficient &vc,
@@ -346,7 +346,7 @@ private:
#endif
Array<int> dof2tk, t_dof, s_dof;
mutable ND_WedgeStatelessDofTransformation doftrans;
ND_WedgeDofTransformation doftrans;
H1_TriangleElement H1TriangleFE;
ND_TriangleElement NDTriangleFE;
@@ -379,7 +379,7 @@ public:
DenseMatrix &I) const
{ LocalInterpolation_ND(CheckVectorFE(fe), tk, dof2tk, Trans, I); }
virtual StatelessDofTransformation * GetDofTransformation() const
virtual const StatelessDofTransformation *GetDofTransformation() const
{ return &doftrans; }
using FiniteElement::Project;
+1 -1
View File
@@ -2896,7 +2896,7 @@ ND_FECollection::FiniteElementForGeometry(Geometry::Type GeomType) const
}
}
StatelessDofTransformation *
const StatelessDofTransformation *
ND_FECollection::DofTransformationForGeometry(Geometry::Type GeomType) const
{
if (!Geometry::IsTensorProduct(GeomType) && this->GetOrder() > 1)
+2 -2
View File
@@ -63,7 +63,7 @@ public:
/** @brief Returns a DoF transformation object compatible with this basis
and geometry type.
*/
virtual StatelessDofTransformation *
virtual const StatelessDofTransformation *
DofTransformationForGeometry(Geometry::Type GeomType) const
{ return NULL; }
@@ -483,7 +483,7 @@ public:
int DofForGeometry(Geometry::Type GeomType) const override
{ return ND_dof[GeomType]; }
StatelessDofTransformation *
const StatelessDofTransformation *
DofTransformationForGeometry(Geometry::Type GeomType) const override;
const int *DofOrderForOrientation(Geometry::Type GeomType,
+187 -195
View File
@@ -63,7 +63,6 @@ FiniteElementSpace::FiniteElementSpace()
elem_dof(NULL), elem_fos(NULL), bdr_elem_dof(NULL), bdr_elem_fos(NULL),
face_dof(NULL),
NURBSext(NULL), own_ext(false),
DoFTrans(0), VDoFTrans(vdim, ordering),
cP_is_set(false),
Th(Operator::ANY_TYPE),
sequence(0), mesh_sequence(0), orders_changed(false), relaxed_hp(false)
@@ -72,7 +71,6 @@ FiniteElementSpace::FiniteElementSpace()
FiniteElementSpace::FiniteElementSpace(const FiniteElementSpace &orig,
Mesh *mesh_,
const FiniteElementCollection *fec_)
: VDoFTrans(orig.vdim, orig.ordering)
{
mesh_ = mesh_ ? mesh_ : orig.mesh;
fec_ = fec_ ? fec_ : orig.fec;
@@ -212,7 +210,7 @@ void FiniteElementSpace::GetVDofs(int vd, Array<int>& dofs, int ndofs_) const
}
}
void FiniteElementSpace::DofsToVDofs (Array<int> &dofs, int ndofs_) const
void FiniteElementSpace::DofsToVDofs(Array<int> &dofs, int ndofs_) const
{
if (vdim == 1) { return; }
if (ndofs_ < 0) { ndofs_ = this->ndofs; }
@@ -264,7 +262,7 @@ int FiniteElementSpace::DofToVDof(int dof, int vd, int ndofs_) const
}
// static function
void FiniteElementSpace::AdjustVDofs (Array<int> &vdofs)
void FiniteElementSpace::AdjustVDofs(Array<int> &vdofs)
{
int n = vdofs.Size(), *vdof = vdofs;
for (int i = 0; i < n; i++)
@@ -277,36 +275,36 @@ void FiniteElementSpace::AdjustVDofs (Array<int> &vdofs)
}
}
void FiniteElementSpace::GetElementVDofs(int i, Array<int> &vdofs,
DofTransformation &doftrans) const
{
GetElementDofs(i, vdofs, doftrans);
DofsToVDofs(vdofs);
doftrans.SetVDim(vdim, ordering);
}
DofTransformation *
FiniteElementSpace::GetElementVDofs(int i, Array<int> &vdofs) const
{
DofTransformation * doftrans = GetElementDofs(i, vdofs);
DoFTrans.SetDofTransformation(NULL);
GetElementVDofs(i, vdofs, DoFTrans);
return DoFTrans.GetDofTransformation() ? &DoFTrans : NULL;
}
void FiniteElementSpace::GetBdrElementVDofs(int i, Array<int> &vdofs,
DofTransformation &doftrans) const
{
GetBdrElementDofs(i, vdofs, doftrans);
DofsToVDofs(vdofs);
if (vdim == 1 || doftrans == NULL)
{
return doftrans;
}
else
{
VDoFTrans.SetDofTransformation(*doftrans);
return &VDoFTrans;
}
doftrans.SetVDim(vdim, ordering);
}
DofTransformation *
FiniteElementSpace::GetBdrElementVDofs(int i, Array<int> &vdofs) const
{
DofTransformation * doftrans = GetBdrElementDofs(i, vdofs);
DofsToVDofs(vdofs);
if (vdim == 1 || doftrans == NULL)
{
return doftrans;
}
else
{
VDoFTrans.SetDofTransformation(*doftrans);
return &VDoFTrans;
}
DoFTrans.SetDofTransformation(NULL);
GetBdrElementVDofs(i, vdofs, DoFTrans);
return DoFTrans.GetDofTransformation() ? &DoFTrans : NULL;
}
void FiniteElementSpace::GetPatchVDofs(int i, Array<int> &vdofs) const
@@ -777,9 +775,9 @@ FiniteElementSpace::H2L_GlobalRestrictionMatrix (FiniteElementSpace *lfes)
return R;
}
void FiniteElementSpace
::AddDependencies(SparseMatrix& deps, Array<int>& master_dofs,
Array<int>& slave_dofs, DenseMatrix& I, int skipfirst)
void FiniteElementSpace::AddDependencies(
SparseMatrix& deps, Array<int>& master_dofs, Array<int>& slave_dofs,
DenseMatrix& I, int skipfirst)
{
for (int i = skipfirst; i < slave_dofs.Size(); i++)
{
@@ -802,11 +800,9 @@ void FiniteElementSpace
}
}
void FiniteElementSpace
::AddEdgeFaceDependencies(SparseMatrix &deps, Array<int> &master_dofs,
const FiniteElement *master_fe,
Array<int> &slave_dofs, int slave_face,
const DenseMatrix *pm) const
void FiniteElementSpace::AddEdgeFaceDependencies(
SparseMatrix &deps, Array<int> &master_dofs, const FiniteElement *master_fe,
Array<int> &slave_dofs, int slave_face, const DenseMatrix *pm) const
{
// In variable-order spaces in 3D, we need to only constrain interior face
// DOFs (this is done one level up), since edge dependencies can be more
@@ -1533,12 +1529,12 @@ SparseMatrix* FiniteElementSpace::RefinementMatrix(int old_ndofs,
localP);
}
FiniteElementSpace::RefinementOperator::RefinementOperator
(const FiniteElementSpace* fespace, Table* old_elem_dof, Table* old_elem_fos,
int old_ndofs)
: fespace(fespace)
, old_elem_dof(old_elem_dof)
, old_elem_fos(old_elem_fos)
FiniteElementSpace::RefinementOperator::RefinementOperator(
const FiniteElementSpace* fespace, Table* old_elem_dof, Table* old_elem_fos,
int old_ndofs)
: fespace(fespace),
old_elem_dof(old_elem_dof),
old_elem_fos(old_elem_fos)
{
MFEM_VERIFY(fespace->GetNE() >= old_elem_dof->Size(),
"Previous mesh is not coarser.");
@@ -1553,7 +1549,7 @@ FiniteElementSpace::RefinementOperator::RefinementOperator
fespace->GetLocalRefinementMatrices(elem_geoms[i], localP[elem_geoms[i]]);
}
ConstructDoFTrans();
ConstructDoFTransArray();
}
FiniteElementSpace::RefinementOperator::RefinementOperator(
@@ -1578,59 +1574,58 @@ FiniteElementSpace::RefinementOperator::RefinementOperator(
old_elem_fos = new Table(*coarse_fes->GetElementToFaceOrientationTable());
}
ConstructDoFTrans();
ConstructDoFTransArray();
}
FiniteElementSpace::RefinementOperator::~RefinementOperator()
{
delete old_elem_dof;
delete old_elem_fos;
for (int i=0; i<old_DoFTrans.Size(); i++)
for (int i=0; i<old_DoFTransArray.Size(); i++)
{
delete old_DoFTrans[i];
delete old_DoFTransArray[i];
}
}
void FiniteElementSpace::RefinementOperator
::ConstructDoFTrans()
void FiniteElementSpace::RefinementOperator::ConstructDoFTransArray()
{
old_DoFTrans.SetSize(Geometry::NUM_GEOMETRIES);
for (int i=0; i<old_DoFTrans.Size(); i++)
old_DoFTransArray.SetSize(Geometry::NUM_GEOMETRIES);
for (int i=0; i<old_DoFTransArray.Size(); i++)
{
old_DoFTrans[i] = NULL;
old_DoFTransArray[i] = NULL;
}
const FiniteElementCollection *fec_ref = fespace->FEColl();
if (dynamic_cast<const ND_FECollection*>(fec_ref))
{
const FiniteElement * nd_tri =
const FiniteElement *nd_tri =
fec_ref->FiniteElementForGeometry(Geometry::TRIANGLE);
if (nd_tri)
{
old_DoFTrans[Geometry::TRIANGLE] =
old_DoFTransArray[Geometry::TRIANGLE] =
new ND_TriDofTransformation(nd_tri->GetOrder());
}
const FiniteElement * nd_tet =
const FiniteElement *nd_tet =
fec_ref->FiniteElementForGeometry(Geometry::TETRAHEDRON);
if (nd_tet)
{
old_DoFTrans[Geometry::TETRAHEDRON] =
old_DoFTransArray[Geometry::TETRAHEDRON] =
new ND_TetDofTransformation(nd_tet->GetOrder());
}
const FiniteElement * nd_pri =
const FiniteElement *nd_pri =
fec_ref->FiniteElementForGeometry(Geometry::PRISM);
if (nd_pri)
{
old_DoFTrans[Geometry::PRISM] =
old_DoFTransArray[Geometry::PRISM] =
new ND_WedgeDofTransformation(nd_pri->GetOrder());
}
}
}
void FiniteElementSpace::RefinementOperator
::Mult(const Vector &x, Vector &y) const
void FiniteElementSpace::RefinementOperator::Mult(const Vector &x,
Vector &y) const
{
Mesh* mesh_ref = fespace->GetMesh();
const CoarseFineTransformations &trans_ref =
@@ -1662,6 +1657,7 @@ void FiniteElementSpace::RefinementOperator
fespace->DofsToVDofs(vd, vdofs);
old_dofs.Copy(old_vdofs);
fespace->DofsToVDofs(vd, old_vdofs, old_ndofs);
x.GetSubVector(old_vdofs, subX);
lP.Mult(subX, subY);
y.SetSubVector(vdofs, subY);
@@ -1670,40 +1666,30 @@ void FiniteElementSpace::RefinementOperator
else
{
old_elem_fos->GetRow(emb.parent, old_Fo);
old_DoFTrans[geom]->SetFaceOrientations(old_Fo);
DofTransformation *new_doftrans = NULL;
VDofTransformation *vdoftrans =
dynamic_cast<VDofTransformation*>(doftrans);
if (vdoftrans)
{
new_doftrans = doftrans;
doftrans = vdoftrans->GetDofTransformation();
}
old_DoFTrans.SetDofTransformation(*old_DoFTransArray[geom]);
old_DoFTrans.SetFaceOrientations(old_Fo);
doftrans->SetVDim();
for (int vd = 0; vd < rvdim; vd++)
{
dofs.Copy(vdofs);
fespace->DofsToVDofs(vd, vdofs);
old_dofs.Copy(old_vdofs);
fespace->DofsToVDofs(vd, old_vdofs, old_ndofs);
x.GetSubVector(old_vdofs, subX);
old_DoFTrans[geom]->InvTransformPrimal(subX);
old_DoFTrans.InvTransformPrimal(subX);
lP.Mult(subX, subY);
doftrans->TransformPrimal(subY);
y.SetSubVector(vdofs, subY);
}
if (vdoftrans)
{
doftrans = new_doftrans;
}
doftrans->SetVDim(rvdim, fespace->GetOrdering());
}
}
}
void FiniteElementSpace::RefinementOperator
::MultTranspose(const Vector &x, Vector &y) const
void FiniteElementSpace::RefinementOperator::MultTranspose(const Vector &x,
Vector &y) const
{
y = 0.0;
@@ -1727,7 +1713,7 @@ void FiniteElementSpace::RefinementOperator
const Geometry::Type geom = mesh_ref->GetElementBaseGeometry(k);
const DenseMatrix &lP = localP[geom](emb.matrix);
DofTransformation * doftrans = fespace->GetElementDofs(k, f_dofs);
DofTransformation *doftrans = fespace->GetElementDofs(k, f_dofs);
old_elem_dof->GetRow(emb.parent, c_dofs);
if (!doftrans)
@@ -1742,7 +1728,6 @@ void FiniteElementSpace::RefinementOperator
fespace->DofsToVDofs(vd, c_vdofs, old_ndofs);
x.GetSubVector(f_vdofs, subX);
for (int p = 0; p < f_dofs.Size(); ++p)
{
if (processed[DecodeDof(f_dofs[p])])
@@ -1750,7 +1735,6 @@ void FiniteElementSpace::RefinementOperator
subX[p] = 0.0;
}
}
lP.MultTranspose(subX, subY);
y.AddElementVector(c_vdofs, subY);
}
@@ -1760,17 +1744,10 @@ void FiniteElementSpace::RefinementOperator
subYt.SetSize(lP.Width());
old_elem_fos->GetRow(emb.parent, old_Fo);
old_DoFTrans[geom]->SetFaceOrientations(old_Fo);
DofTransformation *new_doftrans = NULL;
VDofTransformation *vdoftrans =
dynamic_cast<VDofTransformation*>(doftrans);
if (vdoftrans)
{
new_doftrans = doftrans;
doftrans = vdoftrans->GetDofTransformation();
}
old_DoFTrans.SetDofTransformation(*old_DoFTransArray[geom]);
old_DoFTrans.SetFaceOrientations(old_Fo);
doftrans->SetVDim();
for (int vd = 0; vd < rvdim; vd++)
{
f_dofs.Copy(f_vdofs);
@@ -1787,16 +1764,11 @@ void FiniteElementSpace::RefinementOperator
subX[p] = 0.0;
}
}
lP.MultTranspose(subX, subYt);
old_DoFTrans[geom]->TransformDual(subYt);
old_DoFTrans.TransformDual(subYt);
y.AddElementVector(c_vdofs, subYt);
}
if (vdoftrans)
{
doftrans = new_doftrans;
}
doftrans->SetVDim(rvdim, fespace->GetOrdering());
}
for (int p = 0; p < f_dofs.Size(); ++p)
@@ -2024,8 +1996,8 @@ FiniteElementSpace::DerefinementOperator::~DerefinementOperator()
delete coarse_elem_dof;
}
void FiniteElementSpace::DerefinementOperator
::Mult(const Vector &x, Vector &y) const
void FiniteElementSpace::DerefinementOperator::Mult(const Vector &x,
Vector &y) const
{
Array<int> c_vdofs, f_vdofs;
Vector loc_x, loc_y;
@@ -2227,7 +2199,7 @@ void FiniteElementSpace::Constructor(Mesh *mesh_, NURBSExtension *NURBSext_,
R_transpose.reset();
cP_is_set = false;
ConstructDoFTrans();
ConstructDoFTransArray();
}
else
{
@@ -2239,40 +2211,39 @@ void FiniteElementSpace::Constructor(Mesh *mesh_, NURBSExtension *NURBSext_,
BuildElementToDofTable();
}
void FiniteElementSpace::ConstructDoFTrans()
void FiniteElementSpace::ConstructDoFTransArray()
{
DestroyDoFTrans();
DestroyDoFTransArray();
VDoFTrans.SetVDim(vdim);
DoFTrans.SetSize(Geometry::NUM_GEOMETRIES);
for (int i=0; i<DoFTrans.Size(); i++)
DoFTransArray.SetSize(Geometry::NUM_GEOMETRIES);
for (int i=0; i<DoFTransArray.Size(); i++)
{
DoFTrans[i] = NULL;
DoFTransArray[i] = NULL;
}
if (mesh->Dimension() < 3) { return; }
if (dynamic_cast<const ND_FECollection*>(fec))
{
const FiniteElement * nd_tri =
const FiniteElement *nd_tri =
fec->FiniteElementForGeometry(Geometry::TRIANGLE);
if (nd_tri)
{
DoFTrans[Geometry::TRIANGLE] =
DoFTransArray[Geometry::TRIANGLE] =
new ND_TriDofTransformation(nd_tri->GetOrder());
}
const FiniteElement * nd_tet =
const FiniteElement *nd_tet =
fec->FiniteElementForGeometry(Geometry::TETRAHEDRON);
if (nd_tet)
{
DoFTrans[Geometry::TETRAHEDRON] =
DoFTransArray[Geometry::TETRAHEDRON] =
new ND_TetDofTransformation(nd_tet->GetOrder());
}
const FiniteElement * nd_pri =
const FiniteElement *nd_pri =
fec->FiniteElementForGeometry(Geometry::PRISM);
if (nd_pri)
{
DoFTrans[Geometry::PRISM] =
DoFTransArray[Geometry::PRISM] =
new ND_WedgeDofTransformation(nd_pri->GetOrder());
}
}
@@ -2324,7 +2295,7 @@ void FiniteElementSpace::BuildNURBSFaceToDofTable() const
face_to_be = -1;
for (int b = 0; b < GetNBE(); b++)
{
int f = mesh->GetBdrElementEdgeIndex(b);
int f = mesh->GetBdrElementFaceIndex(b);
face_to_be[f] = b;
}
@@ -2476,7 +2447,7 @@ void FiniteElementSpace::Construct()
ndofs = nvdofs + nedofs + nfdofs + nbdofs;
ConstructDoFTrans();
ConstructDoFTransArray();
// record the current mesh sequence number to detect refinement etc.
mesh_sequence = mesh->GetSequence();
@@ -2501,9 +2472,8 @@ int FiniteElementSpace::MinOrder(VarOrderBits bits)
return 0;
}
void FiniteElementSpace
::CalcEdgeFaceVarOrders(Array<VarOrderBits> &edge_orders,
Array<VarOrderBits> &face_orders) const
void FiniteElementSpace::CalcEdgeFaceVarOrders(
Array<VarOrderBits> &edge_orders, Array<VarOrderBits> &face_orders) const
{
MFEM_ASSERT(IsVariableOrder(), "");
MFEM_ASSERT(Nonconforming(), "");
@@ -2727,8 +2697,8 @@ int FiniteElementSpace::GetNVariants(int entity, int index) const
static const char* msg_orders_changed =
"Element orders changed, you need to Update() the space first.";
DofTransformation *
FiniteElementSpace::GetElementDofs(int elem, Array<int> &dofs) const
void FiniteElementSpace::GetElementDofs(int elem, Array<int> &dofs,
DofTransformation &doftrans) const
{
MFEM_VERIFY(!orders_changed, msg_orders_changed);
@@ -2736,13 +2706,16 @@ FiniteElementSpace::GetElementDofs(int elem, Array<int> &dofs) const
{
elem_dof->GetRow(elem, dofs);
if (DoFTrans[mesh->GetElementBaseGeometry(elem)])
if (DoFTransArray[mesh->GetElementBaseGeometry(elem)])
{
Array<int> Fo;
elem_fos -> GetRow (elem, Fo);
DoFTrans[mesh->GetElementBaseGeometry(elem)]->SetFaceOrientations(Fo);
doftrans.SetDofTransformation(
*DoFTransArray[mesh->GetElementBaseGeometry(elem)]);
doftrans.SetFaceOrientations(Fo);
doftrans.SetVDim();
}
return DoFTrans[mesh->GetElementBaseGeometry(elem)];
return;
}
Array<int> V, E, Eo, F, Fo; // TODO: LocalArray
@@ -2766,10 +2739,12 @@ FiniteElementSpace::GetElementDofs(int elem, Array<int> &dofs) const
{
nfd += fec->GetNumDof(mesh->GetFaceGeometry(F[i]), order);
}
if (DoFTrans[mesh->GetElementBaseGeometry(elem)])
if (DoFTransArray[mesh->GetElementBaseGeometry(elem)])
{
DoFTrans[mesh->GetElementBaseGeometry(elem)]
-> SetFaceOrientations(Fo);
doftrans.SetDofTransformation(
*DoFTransArray[mesh->GetElementBaseGeometry(elem)]);
doftrans.SetFaceOrientations(Fo);
doftrans.SetVDim();
}
}
@@ -2828,54 +2803,18 @@ FiniteElementSpace::GetElementDofs(int elem, Array<int> &dofs) const
dofs.Append(bbase + j);
}
}
return DoFTrans[mesh->GetElementBaseGeometry(elem)];
}
void FiniteElementSpace::GetPatchDofs(int patch, Array<int> &dofs) const
DofTransformation *FiniteElementSpace::GetElementDofs(int elem,
Array<int> &dofs) const
{
MFEM_ASSERT(NURBSext,
"FiniteElementSpace::GetPatchDofs needs a NURBSExtension");
NURBSext->GetPatchDofs(patch, dofs);
DoFTrans.SetDofTransformation(NULL);
GetElementDofs(elem, dofs, DoFTrans);
return DoFTrans.GetDofTransformation() ? &DoFTrans : NULL;
}
const FiniteElement *FiniteElementSpace::GetFE(int i) const
{
if (i < 0 || i >= mesh->GetNE())
{
if (mesh->GetNE() == 0)
{
MFEM_ABORT("Empty MPI partitions are not permitted!");
}
MFEM_ABORT("Invalid element id:" << i << "; minimum allowed:" << 0 <<
", maximum allowed:" << mesh->GetNE()-1);
}
const FiniteElement *FE =
fec->GetFE(mesh->GetElementGeometry(i), GetElementOrderImpl(i));
if (NURBSext)
{
NURBSext->LoadFE(i, FE);
}
else
{
#ifdef MFEM_DEBUG
// consistency check: fec->GetOrder() and FE->GetOrder() should return
// the same value (for standard, constant-order spaces)
if (!IsVariableOrder() && FE->GetDim() > 0)
{
MFEM_ASSERT(FE->GetOrder() == fec->GetOrder(),
"internal error: " <<
FE->GetOrder() << " != " << fec->GetOrder());
}
#endif
}
return FE;
}
DofTransformation *
FiniteElementSpace::GetBdrElementDofs(int bel, Array<int> &dofs) const
void FiniteElementSpace::GetBdrElementDofs(int bel, Array<int> &dofs,
DofTransformation &doftrans) const
{
MFEM_VERIFY(!orders_changed, msg_orders_changed);
@@ -2883,17 +2822,19 @@ FiniteElementSpace::GetBdrElementDofs(int bel, Array<int> &dofs) const
{
bdr_elem_dof->GetRow(bel, dofs);
if (DoFTrans[mesh->GetBdrElementBaseGeometry(bel)])
if (DoFTransArray[mesh->GetBdrElementBaseGeometry(bel)])
{
Array<int> Fo;
bdr_elem_fos -> GetRow (bel, Fo);
DoFTrans[mesh->GetBdrElementBaseGeometry(bel)]->
SetFaceOrientations(Fo);
doftrans.SetDofTransformation(
*DoFTransArray[mesh->GetBdrElementBaseGeometry(bel)]);
doftrans.SetFaceOrientations(Fo);
doftrans.SetVDim();
}
return DoFTrans[mesh->GetBdrElementBaseGeometry(bel)];
return;
}
Array<int> V, E, Eo, Fo; // TODO: LocalArray
Array<int> V, E, Eo; // TODO: LocalArray
int F, oF;
int dim = mesh->Dimension();
@@ -2917,11 +2858,14 @@ FiniteElementSpace::GetBdrElementDofs(int bel, Array<int> &dofs) const
{
mesh->GetBdrElementFace(bel, &F, &oF);
if (DoFTrans[mesh->GetBdrElementBaseGeometry(bel)])
if (DoFTransArray[mesh->GetBdrElementBaseGeometry(bel)])
{
Fo.Append(oF);
DoFTrans[mesh->GetBdrElementBaseGeometry(bel)]->
SetFaceOrientations(Fo);
mfem::Array<int> Fo(1);
Fo[0] = oF;
doftrans.SetDofTransformation(
*DoFTransArray[mesh->GetBdrElementBaseGeometry(bel)]);
doftrans.SetFaceOrientations(Fo);
doftrans.SetVDim();
}
}
@@ -2963,8 +2907,14 @@ FiniteElementSpace::GetBdrElementDofs(int bel, Array<int> &dofs) const
dofs.Append(EncodeDof(nvdofs + nedofs + fbase, ind[j]));
}
}
}
return DoFTrans[mesh->GetBdrElementBaseGeometry(bel)];
DofTransformation *FiniteElementSpace::GetBdrElementDofs(int bel,
Array<int> &dofs) const
{
DoFTrans.SetDofTransformation(NULL);
GetBdrElementDofs(bel, dofs, DoFTrans);
return DoFTrans.GetDofTransformation() ? &DoFTrans : NULL;
}
int FiniteElementSpace::GetFaceDofs(int face, Array<int> &dofs,
@@ -3134,18 +3084,6 @@ int FiniteElementSpace::GetNumElementInteriorDofs(int i) const
GetElementOrderImpl(i));
}
void FiniteElementSpace::GetEdgeInteriorDofs(int i, Array<int> &dofs) const
{
MFEM_VERIFY(!IsVariableOrder(), "not implemented");
int ne = fec->DofForGeometry(Geometry::SEGMENT);
dofs.SetSize (ne);
for (int j = 0, k = nvdofs+i*ne; j < ne; j++, k++)
{
dofs[j] = k;
}
}
void FiniteElementSpace::GetFaceInteriorDofs(int i, Array<int> &dofs) const
{
MFEM_VERIFY(!IsVariableOrder(), "not implemented");
@@ -3170,6 +3108,61 @@ void FiniteElementSpace::GetFaceInteriorDofs(int i, Array<int> &dofs) const
}
}
void FiniteElementSpace::GetEdgeInteriorDofs(int i, Array<int> &dofs) const
{
MFEM_VERIFY(!IsVariableOrder(), "not implemented");
int ne = fec->DofForGeometry(Geometry::SEGMENT);
dofs.SetSize (ne);
for (int j = 0, k = nvdofs+i*ne; j < ne; j++, k++)
{
dofs[j] = k;
}
}
void FiniteElementSpace::GetPatchDofs(int patch, Array<int> &dofs) const
{
MFEM_ASSERT(NURBSext,
"FiniteElementSpace::GetPatchDofs needs a NURBSExtension");
NURBSext->GetPatchDofs(patch, dofs);
}
const FiniteElement *FiniteElementSpace::GetFE(int i) const
{
if (i < 0 || i >= mesh->GetNE())
{
if (mesh->GetNE() == 0)
{
MFEM_ABORT("Empty MPI partitions are not permitted!");
}
MFEM_ABORT("Invalid element id:" << i << "; minimum allowed:" << 0 <<
", maximum allowed:" << mesh->GetNE()-1);
}
const FiniteElement *FE =
fec->GetFE(mesh->GetElementGeometry(i), GetElementOrderImpl(i));
if (NURBSext)
{
NURBSext->LoadFE(i, FE);
}
else
{
#ifdef MFEM_DEBUG
// consistency check: fec->GetOrder() and FE->GetOrder() should return
// the same value (for standard, constant-order spaces)
if (!IsVariableOrder() && FE->GetDim() > 0)
{
MFEM_ASSERT(FE->GetOrder() == fec->GetOrder(),
"internal error: " <<
FE->GetOrder() << " != " << fec->GetOrder());
}
#endif
}
return FE;
}
const FiniteElement *FiniteElementSpace::GetBE(int i) const
{
int order = fec->GetOrder();
@@ -3242,8 +3235,8 @@ const FiniteElement *FiniteElementSpace::GetEdgeElement(int i,
return fec->GetFE(Geometry::SEGMENT, eo);
}
const FiniteElement *FiniteElementSpace
::GetTraceElement(int i, Geometry::Type geom_type) const
const FiniteElement *FiniteElementSpace::GetTraceElement(
int i, Geometry::Type geom_type) const
{
return fec->TraceFiniteElementForGeometry(geom_type);
}
@@ -3283,7 +3276,7 @@ void FiniteElementSpace::Destroy()
}
E2BFQ_array.SetSize(0);
DestroyDoFTrans();
DestroyDoFTransArray();
dof_elem_array.DeleteAll();
dof_ldof_array.DeleteAll();
@@ -3301,19 +3294,18 @@ void FiniteElementSpace::Destroy()
delete bdr_elem_dof;
delete bdr_elem_fos;
delete face_dof;
delete [] bdofs;
}
ceed::RemoveBasisAndRestriction(this);
}
void FiniteElementSpace::DestroyDoFTrans()
void FiniteElementSpace::DestroyDoFTransArray()
{
for (int i = 0; i < DoFTrans.Size(); i++)
for (int i = 0; i < DoFTransArray.Size(); i++)
{
delete DoFTrans[i];
delete DoFTransArray[i];
}
DoFTrans.SetSize(0);
DoFTransArray.SetSize(0);
}
void FiniteElementSpace::GetTransferOperator(
+56 -21
View File
@@ -271,8 +271,8 @@ protected:
int own_ext;
mutable Array<int> face_to_be; // NURBS FE space only
Array<DofTransformation*> DoFTrans;
mutable VDofTransformation VDoFTrans;
Array<StatelessDofTransformation *> DoFTransArray;
mutable DofTransformation DoFTrans;
/** Matrix representing the prolongation from the global conforming dofs to
a set of intermediate partially conforming dofs, e.g. the dofs associated
@@ -328,8 +328,8 @@ protected:
void Construct();
void Destroy();
void ConstructDoFTrans();
void DestroyDoFTrans();
void ConstructDoFTransArray();
void DestroyDoFTransArray();
void BuildElementToDofTable() const;
void BuildBdrElementToDofTable() const;
@@ -416,10 +416,10 @@ protected:
Table* old_elem_dof; // Owned.
Table* old_elem_fos; // Owned.
Array<DofTransformation*> old_DoFTrans;
mutable VDofTransformation old_VDoFTrans;
Array<StatelessDofTransformation*> old_DoFTransArray;
mutable DofTransformation old_DoFTrans;
void ConstructDoFTrans();
void ConstructDoFTransArray();
public:
/** Construct the operator based on the elem_dof table of the original
@@ -803,7 +803,16 @@ public:
/// with triangular faces.
///
/// @note The returned object should NOT be deleted by the caller.
virtual DofTransformation *GetElementDofs(int elem, Array<int> &dofs) const;
DofTransformation *GetElementDofs(int elem, Array<int> &dofs) const;
/// @brief The same as GetElementDofs(), but with a user-allocated
/// DofTransformation object. @a doftrans must be allocated in advance and
/// will be owned by the caller. The user can use the
/// DofTransformation::GetDofTransformation method on the returned
/// @a doftrans object to detect if the DofTransformation should actually be
/// used.
virtual void GetElementDofs(int elem, Array<int> &dofs,
DofTransformation &doftrans) const;
/// @brief Returns indices of degrees of freedom for boundary element 'bel'.
/// The returned indices are offsets into an @ref ldof vector. See also
@@ -817,13 +826,16 @@ public:
/// with triangular faces.
///
/// @note The returned object should NOT be deleted by the caller.
virtual DofTransformation *GetBdrElementDofs(int bel,
Array<int> &dofs) const;
DofTransformation *GetBdrElementDofs(int bel, Array<int> &dofs) const;
/** @brief Returns indices of degrees of freedom for NURBS patch index
@a patch. Cartesian ordering is used, for the tensor-product degrees of
freedom. */
void GetPatchDofs(int patch, Array<int> &dofs) const;
/// @brief The same as GetBdrElementDofs(), but with a user-allocated
/// DofTransformation object. @a doftrans must be allocated in advance and
/// will be owned by the caller. The user can use the
/// DofTransformation::GetDofTransformation method on the returned
/// @a doftrans object to detect if the DofTransformation should actually be
/// used.
virtual void GetBdrElementDofs(int bel, Array<int> &dofs,
DofTransformation &doftrans) const;
/// @brief Returns the indices of the degrees of freedom for the specified
/// face, including the DOFs for the edges and the vertices of the face.
@@ -870,6 +882,13 @@ public:
/// GetElementInteriorVDofs().
void GetElementInteriorDofs(int i, Array<int> &dofs) const;
/// @brief Returns the number of degrees of freedom associated with the
/// interior of the specified element.
///
/// See GetElementInteriorDofs() for more information or to obtain the
/// relevant indices.
int GetNumElementInteriorDofs(int i) const;
/// @brief Returns the indices of the degrees of freedom for the interior
/// of the specified face.
///
@@ -882,13 +901,6 @@ public:
/// GetFaceInteriorVDofs().
void GetFaceInteriorDofs(int i, Array<int> &dofs) const;
/// @brief Returns the number of degrees of freedom associated with the
/// interior of the specified element.
///
/// See GetElementInteriorDofs() for more information or to obtain the
/// relevant indices.
int GetNumElementInteriorDofs(int i) const;
/// @brief Returns the indices of the degrees of freedom for the interior
/// of the specified edge.
///
@@ -897,6 +909,11 @@ public:
void GetEdgeInteriorDofs(int i, Array<int> &dofs) const;
///@}
/** @brief Returns indices of degrees of freedom for NURBS patch index
@a patch. Cartesian ordering is used, for the tensor-product degrees of
freedom. */
void GetPatchDofs(int patch, Array<int> &dofs) const;
/// @anchor dof2vdof @name DoF To VDoF Conversion methods
/// These methods convert between local dof and local vector dof using the
/// appropriate relationship based on the Ordering::Type defined in this
@@ -1023,6 +1040,15 @@ public:
/// @note The returned object should NOT be deleted by the caller.
DofTransformation *GetElementVDofs(int i, Array<int> &vdofs) const;
/// @brief The same as GetElementVDofs(), but with a user-allocated
/// DofTransformation object. @a doftrans must be allocated in advance and
/// will be owned by the caller. The user can use the
/// DofTransformation::GetDofTransformation method on the returned
/// @a doftrans object to detect if the DofTransformation should actually be
/// used.
void GetElementVDofs(int i, Array<int> &vdofs,
DofTransformation &doftrans) const;
/// @brief Returns indices of degrees of freedom for @a i'th boundary
/// element.
/// The returned indices are offsets into an @ref ldof vector with @b vdim
@@ -1038,6 +1064,15 @@ public:
/// @note The returned object should NOT be deleted by the caller.
DofTransformation *GetBdrElementVDofs(int i, Array<int> &vdofs) const;
/// @brief The same as GetBdrElementVDofs(), but with a user-allocated
/// DofTransformation object. @a doftrans must be allocated in advance and
/// will be owned by the caller. The user can use the
/// DofTransformation::GetDofTransformation method on the returned
/// @a doftrans object to detect if the DofTransformation should actually be
/// used.
void GetBdrElementVDofs(int i, Array<int> &vdofs,
DofTransformation &doftrans) const;
/// Returns indices of degrees of freedom in @a vdofs for NURBS patch @a i.
void GetPatchVDofs(int i, Array<int> &vdofs) const;
+9 -9
View File
@@ -31,13 +31,13 @@ FmsBasisTypeToMfemBasis(FmsBasisType b)
switch (b)
{
case FMS_NODAL_GAUSS_OPEN:
retval = mfem::BasisType::GaussLegendre;;
retval = mfem::BasisType::GaussLegendre;
break;
case FMS_NODAL_GAUSS_CLOSED:
retval = mfem::BasisType::GaussLobatto;;
retval = mfem::BasisType::GaussLobatto;
break;
case FMS_POSITIVE:
retval = mfem::BasisType::Positive;;
retval = mfem::BasisType::Positive;
break;
case FMS_NODAL_UNIFORM_OPEN:
retval = mfem::BasisType::OpenUniform;
@@ -1812,22 +1812,22 @@ MeshToFmsMesh(const Mesh *mmesh, FmsMesh *fmesh, FmsComponent *volume)
switch (betype)
{
case Element::POINT:
bdr_eles[FMS_VERTEX].push_back(mmesh->GetBdrElementEdgeIndex(i));
bdr_eles[FMS_VERTEX].push_back(mmesh->GetBdrElementFaceIndex(i));
break;
case Element::SEGMENT:
bdr_eles[FMS_EDGE].push_back(mmesh->GetBdrElementEdgeIndex(i));
bdr_eles[FMS_EDGE].push_back(mmesh->GetBdrElementFaceIndex(i));
break;
case Element::TRIANGLE:
bdr_eles[FMS_TRIANGLE].push_back(mmesh->GetBdrElementEdgeIndex(i));
bdr_eles[FMS_TRIANGLE].push_back(mmesh->GetBdrElementFaceIndex(i));
break;
case Element::QUADRILATERAL:
bdr_eles[FMS_QUADRILATERAL].push_back(mmesh->GetBdrElementEdgeIndex(i));
bdr_eles[FMS_QUADRILATERAL].push_back(mmesh->GetBdrElementFaceIndex(i));
break;
case Element::TETRAHEDRON:
bdr_eles[FMS_TETRAHEDRON].push_back(mmesh->GetBdrElementEdgeIndex(i));
bdr_eles[FMS_TETRAHEDRON].push_back(mmesh->GetBdrElementFaceIndex(i));
break;
case Element::HEXAHEDRON:
bdr_eles[FMS_HEXAHEDRON].push_back(mmesh->GetBdrElementEdgeIndex(i));
bdr_eles[FMS_HEXAHEDRON].push_back(mmesh->GetBdrElementFaceIndex(i));
break;
default:
MFEM_WARNING("Unsupported boundary element " << betype << " at boundary index "
+1 -1
View File
@@ -137,7 +137,7 @@ bool LinearForm::SupportsDevice() const
// Make sure every boundary element corresponds to a boundary face
for (int be = 0; be < fes->GetNBE(); ++be)
{
const int f = mesh.GetBdrElementEdgeIndex(be);
const int f = mesh.GetBdrElementFaceIndex(be);
const auto face_info = mesh.GetFaceInformation(f);
if (!face_info.IsBoundary())
{
+1 -1
View File
@@ -148,7 +148,7 @@ void LinearFormExtension::Update()
std::unordered_map<int,int> f_to_be;
for (int i = 0; i < mesh.GetNBE(); ++i)
{
const int f = mesh.GetBdrElementEdgeIndex(i);
const int f = mesh.GetBdrElementFaceIndex(i);
f_to_be[f] = i;
}
MFEM_VERIFY(size_t(nf_bdr) == f_to_be.size(), "Incompatible sizes");
+8 -8
View File
@@ -257,13 +257,13 @@ void BatchedLOR_AMS::FormCoordinateVectors(const Vector &X_vert)
// vertices of the LOR mesh. The vertex coordinates are already computed in
// E-vector format and passed in in X_vert.
//
// In this function, we need to convert X_vert (which has the shape (dim,
// In this function, we need to convert X_vert (which has the shape (sdim,
// ndof_per_el, nel_ho)) to T-DOF format.
//
// We place the results in the vector xyz_tvec, which has shape (ntdofs, dim)
// We place the results in the vector xyz_tvec, which has shape (ntdofs, sdim)
// and then make the hypre vectors x, y, and z point to subvectors.
//
// In 2D, z is NULL.
// When the space dimension is 2, z is NULL.
// Create the H1 vertex space and get the element restriction
ElementDofOrdering ordering = ElementDofOrdering::LEXICOGRAPHIC;
@@ -275,17 +275,17 @@ void BatchedLOR_AMS::FormCoordinateVectors(const Vector &X_vert)
const int nel_ho = vert_fes.GetNE();
const int ndp1 = order + 1;
const int ndof_per_el = static_cast<int>(pow(ndp1, dim));
const int sdim = dim;
const int sdim = vert_fes.GetMesh()->SpaceDimension();
const int ntdofs = R->Height();
const MemoryClass mc = GetHypreMemoryClass();
bool dev = (mc == MemoryClass::DEVICE);
xyz_tvec = new Vector(ntdofs*dim);
xyz_tvec = new Vector(ntdofs*sdim);
auto xyz_tv = Reshape(HypreWrite(xyz_tvec->GetMemory()), ntdofs, dim);
auto xyz_tv = Reshape(HypreWrite(xyz_tvec->GetMemory()), ntdofs, sdim);
const auto xyz_e =
Reshape(HypreRead(X_vert.GetMemory()), dim, ndof_per_el, nel_ho);
Reshape(HypreRead(X_vert.GetMemory()), sdim, ndof_per_el, nel_ho);
const auto d_offsets = HypreRead(el_restr->Offsets().GetMemory());
const auto d_indices = HypreRead(el_restr->Indices().GetMemory());
const auto ltdof_ldof = HypreRead(R->GetMemoryJ());
@@ -309,7 +309,7 @@ void BatchedLOR_AMS::FormCoordinateVectors(const Vector &X_vert)
x = new HypreParVector(vert_fes.GetComm(), glob_size, d_x_ptr, cols, dev);
double *d_y_ptr = xyz_tv + 1*ntdofs;
y = new HypreParVector(vert_fes.GetComm(), glob_size, d_y_ptr, cols, dev);
if (dim == 3)
if (sdim == 3)
{
double *d_z_ptr = xyz_tv + 2*ntdofs;
z = new HypreParVector(vert_fes.GetComm(), glob_size, d_z_ptr, cols, dev);
+37 -31
View File
@@ -77,6 +77,7 @@ void BatchedLORAssembly::FormLORVertexCoordinates(FiniteElementSpace &fes_ho,
// Get nodal points at the LOR vertices
const int dim = mesh_ho.Dimension();
const int sdim = mesh_ho.SpaceDimension();
const int nel_ho = mesh_ho.GetNE();
const int order = fes_ho.GetMaxElementOrder();
const int nd1d = order + 1;
@@ -94,7 +95,7 @@ void BatchedLORAssembly::FormLORVertexCoordinates(FiniteElementSpace &fes_ho,
IntegrationRule ir = GetCollocatedIntRule(fes_ho);
// Map from nodal E-vector to Q-vector at the LOR vertex points
X_vert.SetSize(dim*ndof_per_el*nel_ho);
X_vert.SetSize(sdim*ndof_per_el*nel_ho);
const QuadratureInterpolator *quad_interp =
nodal_fes->GetQuadratureInterpolator(ir);
quad_interp->SetOutputLayout(QVectorLayout::byVDIM);
@@ -380,44 +381,49 @@ void BatchedLORAssembly::SparseIJToCSR(OperatorHandle &A) const
FillJAndData(*A_mat);
}
template <int ORDER, int SDIM, typename LOR_KERNEL>
static void Assemble_(LOR_KERNEL &kernel, int dim)
{
if (dim == 2) { kernel.template Assemble2D<ORDER,SDIM>(); }
else if (dim == 3) { kernel.template Assemble3D<ORDER>(); }
else { MFEM_ABORT("Unsupported dimension"); }
}
template <int ORDER, typename LOR_KERNEL>
static void Assemble_(LOR_KERNEL &kernel, int dim, int sdim)
{
if (sdim == 2) { Assemble_<ORDER,2>(kernel, dim); }
else if (sdim == 3) { Assemble_<ORDER,3>(kernel, dim); }
else { MFEM_ABORT("Unsupported space dimension."); }
}
template <typename LOR_KERNEL>
static void Assemble_(LOR_KERNEL &kernel, int dim, int sdim, int order)
{
switch (order)
{
case 1: Assemble_<1>(kernel, dim, sdim); break;
case 2: Assemble_<2>(kernel, dim, sdim); break;
case 3: Assemble_<3>(kernel, dim, sdim); break;
case 4: Assemble_<4>(kernel, dim, sdim); break;
case 5: Assemble_<5>(kernel, dim, sdim); break;
case 6: Assemble_<6>(kernel, dim, sdim); break;
case 7: Assemble_<7>(kernel, dim, sdim); break;
case 8: Assemble_<8>(kernel, dim, sdim); break;
default: MFEM_ABORT("No kernel order " << order << "!");
}
}
template <typename LOR_KERNEL>
void BatchedLORAssembly::AssemblyKernel(BilinearForm &a)
{
LOR_KERNEL kernel(a, fes_ho, X_vert, sparse_ij, sparse_mapping);
const int dim = fes_ho.GetMesh()->Dimension();
const int sdim = fes_ho.GetMesh()->SpaceDimension();
const int order = fes_ho.GetMaxElementOrder();
if (dim == 2)
{
switch (order)
{
case 1: kernel.template Assemble2D<1>(); break;
case 2: kernel.template Assemble2D<2>(); break;
case 3: kernel.template Assemble2D<3>(); break;
case 4: kernel.template Assemble2D<4>(); break;
case 5: kernel.template Assemble2D<5>(); break;
case 6: kernel.template Assemble2D<6>(); break;
case 7: kernel.template Assemble2D<7>(); break;
case 8: kernel.template Assemble2D<8>(); break;
default: MFEM_ABORT("No kernel order " << order << "!");
}
}
else if (dim == 3)
{
switch (order)
{
case 1: kernel.template Assemble3D<1>(); break;
case 2: kernel.template Assemble3D<2>(); break;
case 3: kernel.template Assemble3D<3>(); break;
case 4: kernel.template Assemble3D<4>(); break;
case 5: kernel.template Assemble3D<5>(); break;
case 6: kernel.template Assemble3D<6>(); break;
case 7: kernel.template Assemble3D<7>(); break;
case 8: kernel.template Assemble3D<8>(); break;
default: MFEM_ABORT("No kernel order " << order << "!");
}
}
Assemble_(kernel, dim, sdim, order);
}
void BatchedLORAssembly::AssembleWithoutBC(BilinearForm &a, OperatorHandle &A)
+9 -2
View File
@@ -22,15 +22,22 @@ namespace mfem
class BatchedLOR_H1 : BatchedLORKernel
{
public:
template <int ORDER> void Assemble2D();
template <int ORDER, int SDIM> void Assemble2D();
template <int ORDER> void Assemble3D();
BatchedLOR_H1(BilinearForm &a,
FiniteElementSpace &fes_ho_,
Vector &X_vert_,
Vector &sparse_ij_,
Array<int> &sparse_mapping_);
Array<int> &sparse_mapping_)
: BatchedLORKernel(fes_ho_, X_vert_, sparse_ij_, sparse_mapping_)
{
ProjectLORCoefficient<MassIntegrator>(a, c1);
ProjectLORCoefficient<DiffusionIntegrator>(a, c2);
}
};
}
#include "lor_h1_impl.hpp"
#endif
+2 -56
View File
@@ -9,7 +9,6 @@
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "lor_h1.hpp"
#include "lor_util.hpp"
#include "../../linalg/dtensor.hpp"
#include "../../general/forall.hpp"
@@ -17,7 +16,7 @@
namespace mfem
{
template <int ORDER>
template <int ORDER, int SDIM>
void BatchedLOR_H1::Assemble2D()
{
const int nel_ho = fes_ho.GetNE();
@@ -74,31 +73,8 @@ void BatchedLOR_H1::Assemble2D()
for (int i=0; i<sz_local_mat; ++i) { local_mat[i] = 0.0; }
double vx[4], vy[4];
LORVertexCoordinates2D<ORDER>(X, iel_ho, kx, ky, vx, vy);
SetupLORQuadData2D<ORDER,SDIM,false,false>(X, iel_ho, kx, ky, Q, false);
for (int iqy=0; iqy<2; ++iqy)
{
for (int iqx=0; iqx<2; ++iqx)
{
const double x = iqx;
const double y = iqy;
const double w = 1.0/4.0;
double J_[2*2];
DeviceTensor<2> J(J_, 2, 2);
Jacobian2D(x, y, vx, vy, J);
const double detJ = Det2D(J);
const double w_detJ = w/detJ;
Q(0,iqy,iqx) = w_detJ * (J(0,1)*J(0,1) + J(1,1)*J(1,1)); // 1,1
Q(1,iqy,iqx) = -w_detJ * (J(0,1)*J(0,0) + J(1,1)*J(1,0)); // 1,2
Q(2,iqy,iqx) = w_detJ * (J(0,0)*J(0,0) + J(1,0)*J(1,0)); // 2,2
Q(3,iqy,iqx) = w*detJ;
}
}
for (int iqx=0; iqx<2; ++iqx)
{
for (int iqy=0; iqy<2; ++iqy)
@@ -519,34 +495,4 @@ void BatchedLOR_H1::Assemble3D()
}
}
// Explicit template instantiations
template void BatchedLOR_H1::Assemble2D<1>();
template void BatchedLOR_H1::Assemble2D<2>();
template void BatchedLOR_H1::Assemble2D<3>();
template void BatchedLOR_H1::Assemble2D<4>();
template void BatchedLOR_H1::Assemble2D<5>();
template void BatchedLOR_H1::Assemble2D<6>();
template void BatchedLOR_H1::Assemble2D<7>();
template void BatchedLOR_H1::Assemble2D<8>();
template void BatchedLOR_H1::Assemble3D<1>();
template void BatchedLOR_H1::Assemble3D<2>();
template void BatchedLOR_H1::Assemble3D<3>();
template void BatchedLOR_H1::Assemble3D<4>();
template void BatchedLOR_H1::Assemble3D<5>();
template void BatchedLOR_H1::Assemble3D<6>();
template void BatchedLOR_H1::Assemble3D<7>();
template void BatchedLOR_H1::Assemble3D<8>();
BatchedLOR_H1::BatchedLOR_H1(BilinearForm &a,
FiniteElementSpace &fes_ho_,
Vector &X_vert_,
Vector &sparse_ij_,
Array<int> &sparse_mapping_)
: BatchedLORKernel(fes_ho_, X_vert_, sparse_ij_, sparse_mapping_)
{
ProjectLORCoefficient<MassIntegrator>(a, c1);
ProjectLORCoefficient<DiffusionIntegrator>(a, c2);
}
} // namespace mfem
+9 -2
View File
@@ -22,15 +22,22 @@ namespace mfem
class BatchedLOR_ND : BatchedLORKernel
{
public:
template <int ORDER> void Assemble2D();
template <int ORDER, int SDIM> void Assemble2D();
template <int ORDER> void Assemble3D();
BatchedLOR_ND(BilinearForm &a,
FiniteElementSpace &fes_ho_,
Vector &X_vert_,
Vector &sparse_ij_,
Array<int> &sparse_mapping_);
Array<int> &sparse_mapping_)
: BatchedLORKernel(fes_ho_, X_vert_, sparse_ij_, sparse_mapping_)
{
ProjectLORCoefficient<VectorFEMassIntegrator>(a, c1);
ProjectLORCoefficient<CurlCurlIntegrator>(a, c2);
}
};
}
#include "lor_nd_impl.hpp"
#endif
+2 -56
View File
@@ -9,7 +9,6 @@
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "lor_nd.hpp"
#include "lor_util.hpp"
#include "../../linalg/dtensor.hpp"
#include "../../general/forall.hpp"
@@ -17,7 +16,7 @@
namespace mfem
{
template <int ORDER>
template <int ORDER, int SDIM>
void BatchedLOR_ND::Assemble2D()
{
const int nel_ho = fes_ho.GetNE();
@@ -83,31 +82,8 @@ void BatchedLOR_ND::Assemble2D()
// local_mat is the local (dense) stiffness matrix
for (int i=0; i<sz_local_mat; ++i) { local_mat[i] = 0.0; }
double vx[4], vy[4];
LORVertexCoordinates2D<ORDER>(X, iel_ho, kx, ky, vx, vy);
SetupLORQuadData2D<ORDER,SDIM,false,true>(X, iel_ho, kx, ky, Q, true);
for (int iqx=0; iqx<2; ++iqx)
{
for (int iqy=0; iqy<2; ++iqy)
{
const double x = iqx;
const double y = iqy;
const double w = 1.0/4.0;
double J_[2*2];
DeviceTensor<2> J(J_, 2, 2);
Jacobian2D(x, y, vx, vy, J);
const double detJ = Det2D(J);
const double w_detJ = w/detJ;
Q(0,iqy,iqx) = w_detJ * (J(0,1)*J(0,1) + J(1,1)*J(1,1)); // 1,1
Q(1,iqy,iqx) = -w_detJ * (J(0,1)*J(0,0) + J(1,1)*J(1,0)); // 1,2
Q(2,iqy,iqx) = w_detJ * (J(0,0)*J(0,0) + J(1,0)*J(1,0)); // 2,2
Q(3,iqy,iqx) = w_detJ;
}
}
for (int iqx=0; iqx<2; ++iqx)
{
for (int iqy=0; iqy<2; ++iqy)
@@ -563,34 +539,4 @@ void BatchedLOR_ND::Assemble3D()
}
}
// Explicit template instantiations
template void BatchedLOR_ND::Assemble2D<1>();
template void BatchedLOR_ND::Assemble2D<2>();
template void BatchedLOR_ND::Assemble2D<3>();
template void BatchedLOR_ND::Assemble2D<4>();
template void BatchedLOR_ND::Assemble2D<5>();
template void BatchedLOR_ND::Assemble2D<6>();
template void BatchedLOR_ND::Assemble2D<7>();
template void BatchedLOR_ND::Assemble2D<8>();
template void BatchedLOR_ND::Assemble3D<1>();
template void BatchedLOR_ND::Assemble3D<2>();
template void BatchedLOR_ND::Assemble3D<3>();
template void BatchedLOR_ND::Assemble3D<4>();
template void BatchedLOR_ND::Assemble3D<5>();
template void BatchedLOR_ND::Assemble3D<6>();
template void BatchedLOR_ND::Assemble3D<7>();
template void BatchedLOR_ND::Assemble3D<8>();
BatchedLOR_ND::BatchedLOR_ND(BilinearForm &a,
FiniteElementSpace &fes_ho_,
Vector &X_vert_,
Vector &sparse_ij_,
Array<int> &sparse_mapping_)
: BatchedLORKernel(fes_ho_, X_vert_, sparse_ij_, sparse_mapping_)
{
ProjectLORCoefficient<VectorFEMassIntegrator>(a, c1);
ProjectLORCoefficient<CurlCurlIntegrator>(a, c2);
}
} // namespace mfem
+9 -2
View File
@@ -22,15 +22,22 @@ namespace mfem
class BatchedLOR_RT : BatchedLORKernel
{
public:
template <int ORDER> void Assemble2D();
template <int ORDER, int SDIM> void Assemble2D();
template <int ORDER> void Assemble3D();
BatchedLOR_RT(BilinearForm &a,
FiniteElementSpace &fes_ho_,
Vector &X_vert_,
Vector &sparse_ij_,
Array<int> &sparse_mapping_);
Array<int> &sparse_mapping_)
: BatchedLORKernel(fes_ho_, X_vert_, sparse_ij_, sparse_mapping_)
{
ProjectLORCoefficient<VectorFEMassIntegrator>(a, c1);
ProjectLORCoefficient<DivDivIntegrator>(a, c2);
}
};
}
#include "lor_rt_impl.hpp"
#endif
+2 -56
View File
@@ -9,7 +9,6 @@
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "lor_rt.hpp"
#include "lor_util.hpp"
#include "../../linalg/dtensor.hpp"
#include "../../general/forall.hpp"
@@ -17,7 +16,7 @@
namespace mfem
{
template <int ORDER>
template <int ORDER, int SDIM>
void BatchedLOR_RT::Assemble2D()
{
const int nel_ho = fes_ho.GetNE();
@@ -79,31 +78,8 @@ void BatchedLOR_RT::Assemble2D()
// local_mat is the local (dense) stiffness matrix
for (int i=0; i<sz_local_mat; ++i) { local_mat[i] = 0.0; }
double vx[4], vy[4];
LORVertexCoordinates2D<ORDER>(X, iel_ho, kx, ky, vx, vy);
SetupLORQuadData2D<ORDER,SDIM,true,false>(X, iel_ho, kx, ky, Q, true);
for (int iqx=0; iqx<2; ++iqx)
{
for (int iqy=0; iqy<2; ++iqy)
{
const double x = iqx;
const double y = iqy;
const double w = 1.0/4.0;
double J_[2*2];
DeviceTensor<2> J(J_, 2, 2);
Jacobian2D(x, y, vx, vy, J);
const double detJ = Det2D(J);
const double w_detJ = w/detJ;
Q(0,iqy,iqx) = w_detJ * (J(0,0)*J(0,0) + J(1,0)*J(1,0)); // 1,1
Q(1,iqy,iqx) = w_detJ * (J(0,0)*J(0,1) + J(1,0)*J(1,1)); // 1,2
Q(2,iqy,iqx) = w_detJ * (J(0,1)*J(0,1) + J(1,1)*J(1,1)); // 2,2
Q(3,iqy,iqx) = w_detJ;
}
}
for (int iqx=0; iqx<2; ++iqx)
{
for (int iqy=0; iqy<2; ++iqy)
@@ -547,34 +523,4 @@ void BatchedLOR_RT::Assemble3D()
}
}
// Explicit template instantiations
template void BatchedLOR_RT::Assemble2D<1>();
template void BatchedLOR_RT::Assemble2D<2>();
template void BatchedLOR_RT::Assemble2D<3>();
template void BatchedLOR_RT::Assemble2D<4>();
template void BatchedLOR_RT::Assemble2D<5>();
template void BatchedLOR_RT::Assemble2D<6>();
template void BatchedLOR_RT::Assemble2D<7>();
template void BatchedLOR_RT::Assemble2D<8>();
template void BatchedLOR_RT::Assemble3D<1>();
template void BatchedLOR_RT::Assemble3D<2>();
template void BatchedLOR_RT::Assemble3D<3>();
template void BatchedLOR_RT::Assemble3D<4>();
template void BatchedLOR_RT::Assemble3D<5>();
template void BatchedLOR_RT::Assemble3D<6>();
template void BatchedLOR_RT::Assemble3D<7>();
template void BatchedLOR_RT::Assemble3D<8>();
BatchedLOR_RT::BatchedLOR_RT(BilinearForm &a,
FiniteElementSpace &fes_ho_,
Vector &X_vert_,
Vector &sparse_ij_,
Array<int> &sparse_mapping_)
: BatchedLORKernel(fes_ho_, X_vert_, sparse_ij_, sparse_mapping_)
{
ProjectLORCoefficient<VectorFEMassIntegrator>(a, c1);
ProjectLORCoefficient<DivDivIntegrator>(a, c2);
}
} // namespace mfem
+107 -35
View File
@@ -20,11 +20,22 @@
namespace mfem
{
template <int ORDER>
MFEM_HOST_DEVICE inline void LORVertexCoordinates2D(
const double *X, int iel_ho, int kx, int ky, double vx[4], double vy[4])
MFEM_HOST_DEVICE inline double Det2D(DeviceMatrix &J)
{
return J(0,0)*J(1,1) - J(1,0)*J(0,1);
}
MFEM_HOST_DEVICE inline double Det3D(DeviceMatrix &J)
{
return J(0,0) * (J(1,1) * J(2,2) - J(2,1) * J(1,2)) -
J(1,0) * (J(0,1) * J(2,2) - J(2,1) * J(0,2)) +
J(2,0) * (J(0,1) * J(1,2) - J(1,1) * J(0,2));
}
template <int ORDER, int SDIM=2>
MFEM_HOST_DEVICE inline void LORVertexCoordinates2D(
const double *X, int iel_ho, int kx, int ky, double **v)
{
const int dim = 2;
const int nd1d = ORDER + 1;
const int nvert_per_el = nd1d*nd1d;
@@ -33,23 +44,31 @@ MFEM_HOST_DEVICE inline void LORVertexCoordinates2D(
const int v2 = kx + 1 + nd1d*(ky + 1);
const int v3 = kx + nd1d*(ky + 1);
const int e0 = dim*(v0 + nvert_per_el*iel_ho);
const int e1 = dim*(v1 + nvert_per_el*iel_ho);
const int e2 = dim*(v2 + nvert_per_el*iel_ho);
const int e3 = dim*(v3 + nvert_per_el*iel_ho);
const int e0 = SDIM*(v0 + nvert_per_el*iel_ho);
const int e1 = SDIM*(v1 + nvert_per_el*iel_ho);
const int e2 = SDIM*(v2 + nvert_per_el*iel_ho);
const int e3 = SDIM*(v3 + nvert_per_el*iel_ho);
// Vertex coordinates
vx[0] = X[e0 + 0];
vy[0] = X[e0 + 1];
v[0][0] = X[e0 + 0];
v[1][0] = X[e0 + 1];
vx[1] = X[e1 + 0];
vy[1] = X[e1 + 1];
v[0][1] = X[e1 + 0];
v[1][1] = X[e1 + 1];
vx[2] = X[e2 + 0];
vy[2] = X[e2 + 1];
v[0][2] = X[e2 + 0];
v[1][2] = X[e2 + 1];
vx[3] = X[e3 + 0];
vy[3] = X[e3 + 1];
v[0][3] = X[e3 + 0];
v[1][3] = X[e3 + 1];
if (SDIM == 3)
{
v[2][0] = X[e0 + 2];
v[2][1] = X[e1 + 2];
v[2][2] = X[e2 + 2];
v[2][3] = X[e3 + 2];
}
}
template <int ORDER>
@@ -112,15 +131,80 @@ MFEM_HOST_DEVICE inline void LORVertexCoordinates3D(
vz[7] = X[e7 + 2];
}
template <int SDIM=2>
MFEM_HOST_DEVICE inline void Jacobian2D(
const double x, const double y, const double vx[4], const double vy[4],
DeviceMatrix &J)
{
J(0,0) = -(1-y)*vx[0] + (1-y)*vx[1] + y*vx[2] - y*vx[3];
J(0,1) = -(1-x)*vx[0] - x*vx[1] + x*vx[2] + (1-x)*vx[3];
const double x, const double y, double **v, DeviceMatrix &J);
J(1,0) = -(1-y)*vy[0] + (1-y)*vy[1] + y*vy[2] - y*vy[3];
J(1,1) = -(1-x)*vy[0] - x*vy[1] + x*vy[2] + (1-x)*vy[3];
template <> MFEM_HOST_DEVICE inline void Jacobian2D<2>(
const double x, const double y, double **v, DeviceMatrix &J)
{
J(0,0) = -(1-y)*v[0][0] + (1-y)*v[0][1] + y*v[0][2] - y*v[0][3];
J(0,1) = -(1-x)*v[0][0] - x*v[0][1] + x*v[0][2] + (1-x)*v[0][3];
J(1,0) = -(1-y)*v[1][0] + (1-y)*v[1][1] + y*v[1][2] - y*v[1][3];
J(1,1) = -(1-x)*v[1][0] - x*v[1][1] + x*v[1][2] + (1-x)*v[1][3];
}
template <> MFEM_HOST_DEVICE inline void Jacobian2D<3>(
const double x, const double y, double **v, DeviceMatrix &J)
{
J(0,0) = -(1-y)*v[0][0] + (1-y)*v[0][1] + y*v[0][2] - y*v[0][3];
J(0,1) = -(1-x)*v[0][0] - x*v[0][1] + x*v[0][2] + (1-x)*v[0][3];
J(1,0) = -(1-y)*v[1][0] + (1-y)*v[1][1] + y*v[1][2] - y*v[1][3];
J(1,1) = -(1-x)*v[1][0] - x*v[1][1] + x*v[1][2] + (1-x)*v[1][3];
J(2,0) = -(1-y)*v[2][0] + (1-y)*v[2][1] + y*v[2][2] - y*v[2][3];
J(2,1) = -(1-x)*v[2][0] - x*v[2][1] + x*v[2][2] + (1-x)*v[2][3];
}
template <int ORDER, int SDIM, bool RT, bool ND>
MFEM_HOST_DEVICE inline void SetupLORQuadData2D(
const double *X, int iel_ho, int kx, int ky, DeviceTensor<3> &Q, bool piola)
{
double vx[4], vy[4], vz[4];
double *v[] = {vx, vy, vz};
LORVertexCoordinates2D<ORDER,SDIM>(X, iel_ho, kx, ky, v);
for (int iqy=0; iqy<2; ++iqy)
{
for (int iqx=0; iqx<2; ++iqx)
{
const double x = iqx;
const double y = iqy;
const double w = 1.0/4.0;
double J_[SDIM*2];
DeviceTensor<2> J(J_, SDIM, 2);
Jacobian2D<SDIM>(x, y, v, J);
if (SDIM == 2)
{
const double detJ = Det2D(J);
const double w_detJ = w/detJ;
const double E = J(0,0)*J(0,0) + J(1,0)*J(1,0);
const double F = J(0,0)*J(0,1) + J(1,0)*J(1,1);
const double G = J(0,1)*J(0,1) + J(1,1)*J(1,1);
Q(0,iqy,iqx) = w_detJ * (RT ? E : G); // 1,1
Q(1,iqy,iqx) = w_detJ * (RT ? F : -F); // 1,2
Q(2,iqy,iqx) = w_detJ * (RT ? G : E); // 2,2
Q(3,iqy,iqx) = (ND || RT) ? w_detJ : w*detJ;
}
else
{
const double E = J(0,0)*J(0,0) + J(1,0)*J(1,0) + J(2,0)*J(2,0);
const double F = J(0,0)*J(0,1) + J(1,0)*J(1,1) + J(2,0)*J(2,1);
const double G = J(0,1)*J(0,1) + J(1,1)*J(1,1) + J(2,1)*J(2,1);
const double detJ = sqrt(E*G - F*F);
const double w_detJ = w/detJ;
Q(0,iqy,iqx) = w_detJ * (RT ? E : G); // 1,1
Q(1,iqy,iqx) = w_detJ * (RT ? F : -F); // 1,2
Q(2,iqy,iqx) = w_detJ * (RT ? G : E); // 2,2
Q(3,iqy,iqx) = (ND || RT) ? w_detJ : w*detJ;
}
}
}
}
MFEM_HOST_DEVICE inline void Jacobian3D(
@@ -180,18 +264,6 @@ MFEM_HOST_DEVICE inline void Adjugate3D(const DeviceMatrix &J, DeviceMatrix &A)
A(2,2) = (J(0,0) * J(1,1)) - (J(0,1) * J(1,0));
}
MFEM_HOST_DEVICE inline double Det2D(DeviceMatrix &J)
{
return J(0,0)*J(1,1) - J(1,0)*J(0,1);
}
MFEM_HOST_DEVICE inline double Det3D(DeviceMatrix &J)
{
return J(0,0) * (J(1,1) * J(2,2) - J(2,1) * J(1,2)) -
J(1,0) * (J(0,1) * J(2,2) - J(2,1) * J(0,2)) +
J(2,0) * (J(0,1) * J(1,2) - J(1,1) * J(0,2));
}
}
#endif
+169 -11
View File
@@ -97,12 +97,37 @@ double NonlinearForm::GetGridFunctionEnergy(const Vector &x) const
const FiniteElement *fe;
ElementTransformation *T;
DofTransformation *doftrans;
Mesh *mesh = fes->GetMesh();
double energy = 0.0;
if (dnfi.Size())
{
// Which attributes need to be processed?
Array<int> attr_marker(mesh->attributes.Size() ?
mesh->attributes.Max() : 0);
attr_marker = 0;
for (int k = 0; k < dnfi.Size(); k++)
{
if (dnfi_marker[k] == NULL)
{
attr_marker = 1;
break;
}
Array<int> &marker = *dnfi_marker[k];
MFEM_ASSERT(marker.Size() == attr_marker.Size(),
"invalid marker for domain integrator #"
<< k << ", counting from zero");
for (int i = 0; i < attr_marker.Size(); i++)
{
attr_marker[i] |= marker[i];
}
}
for (int i = 0; i < fes->GetNE(); i++)
{
const int attr = mesh->GetAttribute(i);
if (attr_marker[attr-1] == 0) { continue; }
fe = fes->GetFE(i);
doftrans = fes->GetElementVDofs(i, vdofs);
T = fes->GetElementTransformation(i);
@@ -110,6 +135,9 @@ double NonlinearForm::GetGridFunctionEnergy(const Vector &x) const
if (doftrans) {doftrans->InvTransformPrimal(el_x); }
for (int k = 0; k < dnfi.Size(); k++)
{
if (dnfi_marker[k] &&
(*dnfi_marker[k])[attr-1] == 0) { continue; }
energy += dnfi[k]->GetElementEnergy(*fe, *T, el_x);
}
}
@@ -175,8 +203,32 @@ void NonlinearForm::Mult(const Vector &x, Vector &y) const
if (dnfi.Size())
{
// Which attributes need to be processed?
Array<int> attr_marker(mesh->attributes.Size() ?
mesh->attributes.Max() : 0);
attr_marker = 0;
for (int k = 0; k < dnfi.Size(); k++)
{
if (dnfi_marker[k] == NULL)
{
attr_marker = 1;
break;
}
Array<int> &marker = *dnfi_marker[k];
MFEM_ASSERT(marker.Size() == attr_marker.Size(),
"invalid marker for domain integrator #"
<< k << ", counting from zero");
for (int i = 0; i < attr_marker.Size(); i++)
{
attr_marker[i] |= marker[i];
}
}
for (int i = 0; i < fes->GetNE(); i++)
{
const int attr = mesh->GetAttribute(i);
if (attr_marker[attr-1] == 0) { continue; }
fe = fes->GetFE(i);
doftrans = fes->GetElementVDofs(i, vdofs);
T = fes->GetElementTransformation(i);
@@ -184,6 +236,9 @@ void NonlinearForm::Mult(const Vector &x, Vector &y) const
if (doftrans) {doftrans->InvTransformPrimal(el_x); }
for (int k = 0; k < dnfi.Size(); k++)
{
if (dnfi_marker[k] &&
(*dnfi_marker[k])[attr-1] == 0) { continue; }
dnfi[k]->AssembleElementVector(*fe, *T, el_x, el_y);
if (doftrans) {doftrans->TransformDual(el_y); }
py.AddElementVector(vdofs, el_y);
@@ -322,8 +377,32 @@ Operator &NonlinearForm::GetGradient(const Vector &x) const
if (dnfi.Size())
{
// Which attributes need to be processed?
Array<int> attr_marker(mesh->attributes.Size() ?
mesh->attributes.Max() : 0);
attr_marker = 0;
for (int k = 0; k < dnfi.Size(); k++)
{
if (dnfi_marker[k] == NULL)
{
attr_marker = 1;
break;
}
Array<int> &marker = *dnfi_marker[k];
MFEM_ASSERT(marker.Size() == attr_marker.Size(),
"invalid marker for domain integrator #"
<< k << ", counting from zero");
for (int i = 0; i < attr_marker.Size(); i++)
{
attr_marker[i] |= marker[i];
}
}
for (int i = 0; i < fes->GetNE(); i++)
{
const int attr = mesh->GetAttribute(i);
if (attr_marker[attr-1] == 0) { continue; }
fe = fes->GetFE(i);
doftrans = fes->GetElementVDofs(i, vdofs);
T = fes->GetElementTransformation(i);
@@ -331,6 +410,9 @@ Operator &NonlinearForm::GetGradient(const Vector &x) const
if (doftrans) {doftrans->InvTransformPrimal(el_x); }
for (int k = 0; k < dnfi.Size(); k++)
{
if (dnfi_marker[k] &&
(*dnfi_marker[k])[attr-1] == 0) { continue; }
dnfi[k]->AssembleElementGrad(*fe, *T, el_x, elmat);
if (doftrans) { doftrans->TransformDual(elmat); }
Grad->AddSubMatrix(vdofs, vdofs, elmat, skip_zeros);
@@ -561,13 +643,6 @@ BlockNonlinearForm::BlockNonlinearForm(Array<FiniteElementSpace *> &f) :
SetSpaces(f);
}
void BlockNonlinearForm::AddBdrFaceIntegrator(BlockNonlinearFormIntegrator *nfi,
Array<int> &bdr_attr_marker)
{
bfnfi.Append(nfi);
bfnfi_marker.Append(&bdr_attr_marker);
}
void BlockNonlinearForm::SetEssentialBC(
const Array<Array<int> *> &bdr_attr_is_ess, Array<Vector *> &rhs)
{
@@ -592,6 +667,7 @@ double BlockNonlinearForm::GetEnergyBlocked(const BlockVector &bx) const
Array<const FiniteElement *> fe(fes.Size());
ElementTransformation *T;
DofTransformation *doftrans;
Mesh *mesh = fes[0]->GetMesh();
double energy = 0.0;
for (int i=0; i<fes.Size(); ++i)
@@ -601,8 +677,33 @@ double BlockNonlinearForm::GetEnergyBlocked(const BlockVector &bx) const
}
if (dnfi.Size())
{
// Which attributes need to be processed?
Array<int> attr_marker(mesh->attributes.Size() ?
mesh->attributes.Max() : 0);
attr_marker = 0;
for (int k = 0; k < dnfi.Size(); k++)
{
if (dnfi_marker[k] == NULL)
{
attr_marker = 1;
break;
}
Array<int> &marker = *dnfi_marker[k];
MFEM_ASSERT(marker.Size() == attr_marker.Size(),
"invalid marker for domain integrator #"
<< k << ", counting from zero");
for (int i = 0; i < attr_marker.Size(); i++)
{
attr_marker[i] |= marker[i];
}
}
for (int i = 0; i < fes[0]->GetNE(); ++i)
{
const int attr = mesh->GetAttribute(i);
if (attr_marker[attr-1] == 0) { continue; }
T = fes[0]->GetElementTransformation(i);
for (int s=0; s<fes.Size(); ++s)
{
@@ -614,9 +715,13 @@ double BlockNonlinearForm::GetEnergyBlocked(const BlockVector &bx) const
for (int k = 0; k < dnfi.Size(); ++k)
{
if (dnfi_marker[k] &&
(*dnfi_marker[k])[attr-1] == 0) { continue; }
energy += dnfi[k]->GetElementEnergy(fe, *T, el_x_const);
}
}
}
// free the allocated memory
for (int i = 0; i < fes.Size(); ++i)
@@ -656,6 +761,7 @@ void BlockNonlinearForm::MultBlocked(const BlockVector &bx,
Array<const FiniteElement *> fe2(fes.Size());
ElementTransformation *T;
Array<DofTransformation *> doftrans(fes.Size()); doftrans = nullptr;
Mesh *mesh = fes[0]->GetMesh();
by.UseDevice(true);
by = 0.0;
@@ -670,8 +776,32 @@ void BlockNonlinearForm::MultBlocked(const BlockVector &bx,
if (dnfi.Size())
{
// Which attributes need to be processed?
Array<int> attr_marker(mesh->attributes.Size() ?
mesh->attributes.Max() : 0);
attr_marker = 0;
for (int k = 0; k < dnfi.Size(); k++)
{
if (dnfi_marker[k] == NULL)
{
attr_marker = 1;
break;
}
Array<int> &marker = *dnfi_marker[k];
MFEM_ASSERT(marker.Size() == attr_marker.Size(),
"invalid marker for domain integrator #"
<< k << ", counting from zero");
for (int i = 0; i < attr_marker.Size(); i++)
{
attr_marker[i] |= marker[i];
}
}
for (int i = 0; i < fes[0]->GetNE(); ++i)
{
const int attr = mesh->GetAttribute(i);
if (attr_marker[attr-1] == 0) { continue; }
T = fes[0]->GetElementTransformation(i);
for (int s = 0; s < fes.Size(); ++s)
{
@@ -683,6 +813,9 @@ void BlockNonlinearForm::MultBlocked(const BlockVector &bx,
for (int k = 0; k < dnfi.Size(); ++k)
{
if (dnfi_marker[k] &&
(*dnfi_marker[k])[attr-1] == 0) { continue; }
dnfi[k]->AssembleElementVector(fe, *T,
el_x_const, el_y);
@@ -698,7 +831,6 @@ void BlockNonlinearForm::MultBlocked(const BlockVector &bx,
if (fnfi.Size())
{
Mesh *mesh = fes[0]->GetMesh();
FaceElementTransformations *tr;
for (int i = 0; i < mesh->GetNumFaces(); ++i)
@@ -736,8 +868,8 @@ void BlockNonlinearForm::MultBlocked(const BlockVector &bx,
if (bfnfi.Size())
{
Mesh *mesh = fes[0]->GetMesh();
FaceElementTransformations *tr;
// Which boundary attributes need to be processed?
Array<int> bdr_attr_marker(mesh->bdr_attributes.Size() ?
mesh->bdr_attributes.Max() : 0);
@@ -858,6 +990,7 @@ void BlockNonlinearForm::ComputeGradientBlocked(const BlockVector &bx) const
Array<const FiniteElement *>fe2(fes.Size());
ElementTransformation * T;
Array<DofTransformation *> doftrans(fes.Size()); doftrans = nullptr;
Mesh *mesh = fes[0]->GetMesh();
for (int i=0; i<fes.Size(); ++i)
{
@@ -888,8 +1021,32 @@ void BlockNonlinearForm::ComputeGradientBlocked(const BlockVector &bx) const
if (dnfi.Size())
{
// Which attributes need to be processed?
Array<int> attr_marker(mesh->attributes.Size() ?
mesh->attributes.Max() : 0);
attr_marker = 0;
for (int k = 0; k < dnfi.Size(); k++)
{
if (dnfi_marker[k] == NULL)
{
attr_marker = 1;
break;
}
Array<int> &marker = *dnfi_marker[k];
MFEM_ASSERT(marker.Size() == attr_marker.Size(),
"invalid marker for domain integrator #"
<< k << ", counting from zero");
for (int i = 0; i < attr_marker.Size(); i++)
{
attr_marker[i] |= marker[i];
}
}
for (int i = 0; i < fes[0]->GetNE(); ++i)
{
const int attr = mesh->GetAttribute(i);
if (attr_marker[attr-1] == 0) { continue; }
T = fes[0]->GetElementTransformation(i);
for (int s = 0; s < fes.Size(); ++s)
{
@@ -901,6 +1058,9 @@ void BlockNonlinearForm::ComputeGradientBlocked(const BlockVector &bx) const
for (int k = 0; k < dnfi.Size(); ++k)
{
if (dnfi_marker[k] &&
(*dnfi_marker[k])[attr-1] == 0) { continue; }
dnfi[k]->AssembleElementGrad(fe, *T, el_x_const, elmats);
for (int j=0; j<fes.Size(); ++j)
@@ -923,7 +1083,6 @@ void BlockNonlinearForm::ComputeGradientBlocked(const BlockVector &bx) const
if (fnfi.Size())
{
FaceElementTransformations *tr;
Mesh *mesh = fes[0]->GetMesh();
for (int i = 0; i < mesh->GetNumFaces(); ++i)
{
@@ -960,7 +1119,6 @@ void BlockNonlinearForm::ComputeGradientBlocked(const BlockVector &bx) const
if (bfnfi.Size())
{
FaceElementTransformations *tr;
Mesh *mesh = fes[0]->GetMesh();
// Which boundary attributes need to be processed?
Array<int> bdr_attr_marker(mesh->bdr_attributes.Size() ?
+17 -4
View File
@@ -37,6 +37,7 @@ protected:
/// Set of Domain Integrators to be assembled (added).
Array<NonlinearFormIntegrator*> dnfi; // owned
Array<Array<int>*> dnfi_marker; // not owned
/// Set of interior face Integrators to be assembled (added).
Array<NonlinearFormIntegrator*> fnfi; // owned
@@ -108,7 +109,12 @@ public:
/// Adds new Domain Integrator.
void AddDomainIntegrator(NonlinearFormIntegrator *nlfi)
{ dnfi.Append(nlfi); }
{ dnfi.Append(nlfi); dnfi_marker.Append(NULL); }
/// Adds new Domain Integrator, restricted to specific attributes.
void AddDomainIntegrator(NonlinearFormIntegrator *nlfi,
Array<int> &elem_marker)
{ dnfi.Append(nlfi); dnfi_marker.Append(&elem_marker); }
/// Access all integrators added with AddDomainIntegrator().
Array<NonlinearFormIntegrator*> *GetDNFI() { return &dnfi; }
@@ -227,13 +233,14 @@ protected:
/// Set of Domain Integrators to be assembled (added).
Array<BlockNonlinearFormIntegrator*> dnfi;
Array<Array<int>*> dnfi_marker;
/// Set of interior face Integrators to be assembled (added).
Array<BlockNonlinearFormIntegrator*> fnfi;
/// Set of Boundary Face Integrators to be assembled (added).
Array<BlockNonlinearFormIntegrator*> bfnfi;
Array<Array<int>*> bfnfi_marker;
Array<Array<int>*> bfnfi_marker;
/** Auxiliary block-vectors for wrapping input and output vectors or holding
GridFunction-like block-vector data (e.g. in parallel). */
@@ -298,7 +305,12 @@ public:
/// Adds new Domain Integrator.
void AddDomainIntegrator(BlockNonlinearFormIntegrator *nlfi)
{ dnfi.Append(nlfi); }
{ dnfi.Append(nlfi); dnfi_marker.Append(NULL); }
/// Adds new Domain Integrator, restricted to specific attributes.
void AddDomainIntegrator(BlockNonlinearFormIntegrator *nlfi,
Array<int> &elem_marker)
{ dnfi.Append(nlfi); dnfi_marker.Append(&elem_marker); }
/// Adds new Interior Face Integrator.
void AddInteriorFaceIntegrator(BlockNonlinearFormIntegrator *nlfi)
@@ -311,7 +323,8 @@ public:
/** @brief Adds new Boundary Face Integrator, restricted to specific boundary
attributes. */
void AddBdrFaceIntegrator(BlockNonlinearFormIntegrator *nlfi,
Array<int> &bdr_marker);
Array<int> &bdr_marker)
{ bfnfi.Append(nlfi); bfnfi_marker.Append(&bdr_marker); }
virtual void SetEssentialBC(const Array<Array<int> *>&bdr_attr_is_ess,
Array<Vector *> &rhs);
+42 -48
View File
@@ -466,53 +466,54 @@ void ParFiniteElementSpace::ApplyLDofSigns(Table &el_dof) const
ApplyLDofSigns(all_dofs);
}
DofTransformation *
ParFiniteElementSpace::GetElementDofs(int i, Array<int> &dofs) const
void ParFiniteElementSpace::GetElementDofs(int i, Array<int> &dofs,
DofTransformation &doftrans) const
{
if (elem_dof)
{
elem_dof->GetRow(i, dofs);
if (DoFTrans[mesh->GetElementBaseGeometry(i)])
if (DoFTransArray[mesh->GetElementBaseGeometry(i)])
{
Array<int> Fo;
elem_fos->GetRow(i, Fo);
DoFTrans[mesh->GetElementBaseGeometry(i)]->SetFaceOrientations(Fo);
return DoFTrans[mesh->GetElementBaseGeometry(i)];
doftrans.SetDofTransformation(
*DoFTransArray[mesh->GetElementBaseGeometry(i)]);
doftrans.SetFaceOrientations(Fo);
doftrans.SetVDim();
}
return NULL;
return;
}
DofTransformation * doftrans = FiniteElementSpace::GetElementDofs(i, dofs);
FiniteElementSpace::GetElementDofs(i, dofs, doftrans);
if (Conforming())
{
ApplyLDofSigns(dofs);
}
return doftrans;
}
DofTransformation *
ParFiniteElementSpace::GetBdrElementDofs(int i, Array<int> &dofs) const
void ParFiniteElementSpace::GetBdrElementDofs(int i, Array<int> &dofs,
DofTransformation &doftrans) const
{
if (bdr_elem_dof)
{
bdr_elem_dof->GetRow(i, dofs);
if (DoFTrans[mesh->GetBdrElementBaseGeometry(i)])
if (DoFTransArray[mesh->GetBdrElementBaseGeometry(i)])
{
Array<int> Fo;
bdr_elem_fos -> GetRow (i, Fo);
DoFTrans[mesh->GetBdrElementBaseGeometry(i)]->SetFaceOrientations(Fo);
return DoFTrans[mesh->GetBdrElementBaseGeometry(i)];
bdr_elem_fos->GetRow(i, Fo);
doftrans.SetDofTransformation(
*DoFTransArray[mesh->GetBdrElementBaseGeometry(i)]);
doftrans.SetFaceOrientations(Fo);
doftrans.SetVDim();
}
return NULL;
return;
}
DofTransformation * doftrans =
FiniteElementSpace::GetBdrElementDofs(i, dofs);
FiniteElementSpace::GetBdrElementDofs(i, dofs, doftrans);
if (Conforming())
{
ApplyLDofSigns(dofs);
}
return doftrans;
}
int ParFiniteElementSpace::GetFaceDofs(int i, Array<int> &dofs,
@@ -939,8 +940,8 @@ void ParFiniteElementSpace::Build_Dof_TrueDof_Matrix() const // matrix P
}
else if (i_offd[i+1] == i_offd[i] + 2)
{
const double * T = ND_StatelessDofTransformation
::GetFaceTransform(ltori[i]).GetData();
const double *T =
ND_DofTransformation::GetFaceTransform(ltori[i]).GetData();
j_offd[i_offd[i] + 1] = j_offd[i_offd[i]] + 1;
d_offd[i_offd[i]] = T[0]; d_offd[i_offd[i] + 1] = T[2];
i++;
@@ -1454,31 +1455,30 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
delete [] requests;
}
DofTransformation *ParFiniteElementSpace::GetFaceNbrElementVDofs(
int i, Array<int> &vdofs) const
void ParFiniteElementSpace::GetFaceNbrElementVDofs(
int i, Array<int> &vdofs, DofTransformation &doftrans) const
{
face_nbr_element_dof.GetRow(i, vdofs);
DofTransformation *doftrans = NULL;
Geometry::Type geom = GetFaceNbrFE(i)->GetGeomType();
if (DoFTrans[geom])
if (DoFTransArray[GetFaceNbrFE(i)->GetGeomType()])
{
Array<int> F, Fo;
pmesh->GetFaceNbrElementFaces(pmesh->GetNE() + i, F, Fo);
doftrans = DoFTrans[geom];
doftrans->SetFaceOrientations(Fo);
}
if (vdim == 1 || doftrans == NULL)
{
return doftrans;
}
else
{
VDoFTrans.SetDofTransformation(*doftrans);
return &VDoFTrans;
doftrans.SetDofTransformation(
*DoFTransArray[GetFaceNbrFE(i)->GetGeomType()]);
doftrans.SetFaceOrientations(Fo);
doftrans.SetVDim(vdim, ordering);
}
}
DofTransformation *ParFiniteElementSpace::GetFaceNbrElementVDofs(
int i, Array<int> &vdofs) const
{
DoFTrans.SetDofTransformation(NULL);
GetFaceNbrElementVDofs(i, vdofs, DoFTrans);
return DoFTrans.GetDofTransformation() ? &DoFTrans : NULL;
}
void ParFiniteElementSpace::GetFaceNbrFaceVDofs(int i, Array<int> &vdofs) const
{
// Works for NC mesh where 'i' is an index returned by
@@ -2235,19 +2235,13 @@ void NeighborRowMessage::Decode(int rank)
// This is the second "fundamental unit" used in the transformation.
const auto initial_second_row = second_row;
const double *T =
ND_DofTransformation::GetFaceTransform(fo).GetData();
const auto T = [&fo]()
{
auto T = ND_StatelessDofTransformation::GetFaceTransform(fo);
T(0,0) -= 1;
T(1,1) -= 1;
return T;
}();
first_row.AddRow(initial_first_row, T(0,0));
first_row.AddRow(initial_second_row, T(0,1));
second_row.AddRow(initial_first_row, T(1,0));
second_row.AddRow(initial_second_row, T(1,1));
first_row.AddRow(initial_first_row, T[0] - 1.0);
first_row.AddRow(initial_second_row, T[2]);
second_row.AddRow(initial_first_row, T[1]);
second_row.AddRow(initial_second_row, T[3] - 1.0);
first_row.Collapse();
second_row.Collapse();
+12 -4
View File
@@ -284,11 +284,17 @@ public:
/// Return the number of local vector true dofs.
int GetTrueVSize() const override { return ltdof_size; }
/// Returns indexes of degrees of freedom in array dofs for i'th element.
DofTransformation *GetElementDofs(int i, Array<int> &dofs) const override;
/// Returns indexes of degrees of freedom in array dofs for i'th element and
/// returns the DofTransformation data in a user-provided object.
using FiniteElementSpace::GetElementDofs;
void GetElementDofs(int i, Array<int> &dofs,
DofTransformation &doftrans) const override;
/// Returns indexes of degrees of freedom for i'th boundary element.
DofTransformation *GetBdrElementDofs(int i, Array<int> &dofs) const override;
/// Returns indexes of degrees of freedom for i'th boundary element and
/// returns the DofTransformation data in a user-provided object.
using FiniteElementSpace::GetBdrElementDofs;
void GetBdrElementDofs(int i, Array<int> &dofs,
DofTransformation &doftrans) const override;
/** Returns the indexes of the degrees of freedom for i'th face
including the dofs for the edges and the vertices of the face. */
@@ -382,6 +388,8 @@ public:
// Face-neighbor functions
void ExchangeFaceNbrData();
int GetFaceNbrVSize() const { return num_face_nbr_dofs; }
void GetFaceNbrElementVDofs(int i, Array<int> &vdofs,
DofTransformation &doftrans) const;
DofTransformation *GetFaceNbrElementVDofs(int i, Array<int> &vdofs) const;
void GetFaceNbrFaceVDofs(int i, Array<int> &vdofs) const;
const FiniteElement *GetFaceNbrFE(int i) const;
+17 -1
View File
@@ -693,7 +693,23 @@ void ParGridFunction::ProjectBdrCoefficient(
#ifdef MFEM_DEBUG
Array<int> ess_vdofs_marker;
pfes->GetEssentialVDofs(attr, ess_vdofs_marker);
if (vcoeff) { pfes->GetEssentialVDofs(attr, ess_vdofs_marker); }
else
{
ess_vdofs_marker.SetSize(Size());
ess_vdofs_marker = 0;
for (int i = 0; i < fes->GetVDim(); i++)
{
if (!coeff[i]) { continue; }
Array<int> component_dof_marker;
pfes->GetEssentialVDofs(attr, component_dof_marker,i);
for (int j = 0; j<Size(); j++)
{
ess_vdofs_marker[j] = bool(ess_vdofs_marker[j]) ||
bool(component_dof_marker[j]);
}
}
}
for (int i = 0; i < values_counter.Size(); i++)
{
MFEM_ASSERT(pfes->GetLocalTDofNumber(i) == -1 ||
+1 -1
View File
@@ -177,7 +177,7 @@ int FaceQuadratureSpace::GetEntityIndex(const ElementTransformation &T) const
return get_face_index(T.ElementNo);
case ElementTransformation::BDR_ELEMENT:
case ElementTransformation::BDR_FACE:
return get_face_index(mesh.GetBdrElementEdgeIndex(T.ElementNo));
return get_face_index(mesh.GetBdrElementFaceIndex(T.ElementNo));
default:
MFEM_ABORT("Invalid element type.");
return -1;
+41 -10
View File
@@ -462,21 +462,52 @@ void TMOP_Metric_009::AssembleH(const DenseMatrix &Jpt,
ie.Assemble_ddI1b(weight, A.GetData());
}
// mu_14 = |T-I|^2
double TMOP_Metric_014::EvalWMatrixForm(const DenseMatrix &Jpt) const
{
// mu_14 = |J - I|^2.
DenseMatrix Mat(Jpt);
Mat(0,0) -= 1.0;
Mat(1,1) -= 1.0;
return Mat.FNorm2();
}
double TMOP_Metric_014::EvalW(const DenseMatrix &Jpt) const
{
MFEM_VERIFY(Jtr != NULL,
"Requires a target Jacobian, use SetTargetJacobian().");
// mu_14 = |J - I|^2 = I1[J-I].
DenseMatrix Mat(Jpt);
Mat(0,0) -= 1.0;
Mat(1,1) -= 1.0;
DenseMatrix Id(2,2);
ie.SetJacobian(Mat.GetData());
return ie.Get_I1();
}
Id(0,0) = 1; Id(0,1) = 0;
Id(1,0) = 0; Id(1,1) = 1;
void TMOP_Metric_014::EvalP(const DenseMatrix &Jpt, DenseMatrix &P) const
{
// P = dI1[J-I] d/dJ[J-I] = dI1[J-I].
DenseMatrix JptMinusId = Jpt;
for (int i = 0; i < Jpt.Size(); i++)
{
JptMinusId(i, i) -= 1.0;
}
ie.SetJacobian(JptMinusId.GetData());
P = ie.Get_dI1();
}
DenseMatrix Mat(2,2);
Mat = Jpt;
Mat.Add(-1,Id);
return Mat.FNorm2();
void TMOP_Metric_014::AssembleH(const DenseMatrix &Jpt,
const DenseMatrix &DS,
const double weight,
DenseMatrix &A) const
{
// dP = ddI1[J-I].
DenseMatrix JptMinusId = Jpt;
for (int i = 0; i < Jpt.Size(); i++)
{
JptMinusId(i, i) -= 1.0;
}
ie.SetJacobian(JptMinusId.GetData());
ie.SetDerivativeMatrix(DS.Height(), DS.GetData());
ie.Assemble_ddI1(weight, A.GetData());
}
double TMOP_Metric_022::EvalW(const DenseMatrix &Jpt) const
+9 -5
View File
@@ -373,16 +373,20 @@ public:
/// 2D non-barrier Shape+Size+Orientation (VOS) metric (polyconvex).
class TMOP_Metric_014 : public TMOP_QualityMetric
{
protected:
mutable InvariantsEvaluator2D<double> ie;
public:
// W = |T-I|^2.
// W = |J - I|^2.
virtual double EvalWMatrixForm(const DenseMatrix &Jpt) const;
// W = I1[J-I].
virtual double EvalW(const DenseMatrix &Jpt) const;
virtual void EvalP(const DenseMatrix &Jpt, DenseMatrix &P) const
{ MFEM_ABORT("Not implemented"); }
virtual void EvalP(const DenseMatrix &Jpt, DenseMatrix &P) const;
virtual void AssembleH(const DenseMatrix &Jpt, const DenseMatrix &DS,
const double weight, DenseMatrix &A) const
{ MFEM_ABORT("Not implemented"); }
const double weight, DenseMatrix &A) const;
};
/// 2D Shifted barrier form of shape metric (mu_2).
+12
View File
@@ -26,6 +26,10 @@
#include "sort_pairs.hpp"
#include "globals.hpp"
#ifdef MFEM_USE_STRUMPACK
#include <StrumpackConfig.hpp> // STRUMPACK_USE_PTSCOTCH, etc.
#endif
#include <iostream>
#include <map>
@@ -34,6 +38,14 @@ using namespace std;
namespace mfem
{
#if defined(MFEM_USE_STRUMPACK) && \
(defined(STRUMPACK_USE_PTSCOTCH) || defined(STRUMPACK_USE_SLATE_SCALAPACK))
int Mpi::default_thread_required = MPI_THREAD_MULTIPLE;
#else
int Mpi::default_thread_required = MPI_THREAD_SINGLE;
#endif
GroupTopology::GroupTopology(const GroupTopology &gt)
: MyComm(gt.MyComm),
group_lproc(gt.group_lproc)
+36 -14
View File
@@ -22,7 +22,6 @@
#include "globals.hpp"
#include <mpi.h>
namespace mfem
{
@@ -32,10 +31,34 @@ namespace mfem
class Mpi
{
public:
/// Singleton creation with Mpi::Init();
static void Init() { Init_(NULL, NULL); }
/// Singleton creation with Mpi::Init(argc,argv);
static void Init(int &argc, char **&argv) { Init_(&argc, &argv); }
/// Singleton creation with Mpi::Init(argc, argv).
static void Init(int &argc, char **&argv,
int required = default_thread_required,
int *provided = nullptr)
{ Init(&argc, &argv, required, provided); }
/// Singleton creation with Mpi::Init().
static void Init(int *argc = nullptr, char ***argv = nullptr,
int required = default_thread_required,
int *provided = nullptr)
{
MFEM_VERIFY(!IsInitialized(), "MPI already initialized!");
if (required == MPI_THREAD_SINGLE)
{
int mpi_err = MPI_Init(argc, argv);
MFEM_VERIFY(!mpi_err, "error in MPI_Init()!");
if (provided) { *provided = MPI_THREAD_SINGLE; }
}
else
{
int mpi_provided;
int mpi_err = MPI_Init_thread(argc, argv, required, &mpi_provided);
MFEM_VERIFY(!mpi_err, "error in MPI_Init()!");
if (provided) { *provided = mpi_provided; }
}
// The Mpi singleton object below needs to be created after MPI_Init() for
// some MPI implementations.
Singleton();
}
/// Finalize MPI (if it has been initialized and not yet already finalized).
static void Finalize()
{
@@ -71,20 +94,19 @@ public:
}
/// Return true if the rank in MPI_COMM_WORLD is zero.
static bool Root() { return WorldRank() == 0; }
/// Default level of thread support for MPI_Init_thread.
static MFEM_EXPORT int default_thread_required;
private:
/// Initialize MPI
static void Init_(int *argc, char ***argv)
/// Initialize the Mpi singleton.
static Mpi &Singleton()
{
MFEM_VERIFY(!IsInitialized(), "MPI already initialized!")
MPI_Init(argc, argv);
// The "mpi" object below needs to be created after MPI_Init() for some
// MPI implementations
static Mpi mpi;
return mpi;
}
/// Finalize MPI
/// Finalize MPI.
~Mpi() { Finalize(); }
/// Prevent direct construction of objects of this class
Mpi() { }
/// Prevent direct construction of objects of this class.
Mpi() {}
};
/** @brief A simple convenience class based on the Mpi singleton class above.
+50 -31
View File
@@ -16,13 +16,13 @@
#include <cstdlib>
#include <errno.h>
#ifndef _WIN32
#include <netinet/in.h>
#include <netdb.h>
#include <sys/types.h>
#include <sys/socket.h>
#include <unistd.h>
#else
#include <winsock.h>
#include <winsock2.h>
#include <ws2tcpip.h>
#ifdef _MSC_VER
typedef int ssize_t;
// Link with ws2_32.lib
@@ -51,47 +51,66 @@ int isockstream::establish()
{
// char myname[129];
char myname[] = "localhost";
int port;
struct sockaddr_in sa;
struct hostent *hp;
int sfd;
struct addrinfo hints, *res, *rp;
memset(&sa, 0, sizeof(struct sockaddr_in));
// gethostname(myname, 128);
hp= gethostbyname(myname);
memset(&hints, 0, sizeof(hints));
hints.ai_family = AF_UNSPEC;
hints.ai_socktype = SOCK_STREAM;
hints.ai_protocol = 0;
if (hp == NULL)
int s = getaddrinfo(myname, NULL, &hints, &res);
if (s != 0)
{
mfem::err << "isockstream::establish(): gethostbyname() failed!\n"
<< "isockstream::establish(): gethostname() returned: '"
mfem::err << "isockstream::establish(): getaddrinfo() failed!\n"
<< "isockstream::establish(): getaddrinfo() returned: '"
<< myname << "'" << endl;
error = 1;
return (-1);
}
sa.sin_family= hp->h_addrtype;
sa.sin_port= htons(portnum);
if ((port = socket(AF_INET, SOCK_STREAM, 0)) < 0)
// loop the list of address structures returned by getaddrinfo()
for (rp = res; rp != NULL; rp = rp->ai_next)
{
mfem::err << "isockstream::establish(): socket() failed!" << endl;
error = 2;
if ((sfd = socket(rp->ai_family, rp->ai_socktype, rp->ai_protocol)) < 0)
{
mfem::err << "isockstream::establish(): socket() failed!" << endl;
error = 2;
return (-1);
}
int on = 1;
if (setsockopt(sfd, SOL_SOCKET, SO_REUSEADDR, (char *)&on, sizeof(on)) < 0)
{
mfem::err << "isockstream::establish(): setsockopt() failed!" << endl;
return (-1);
}
#if defined(__APPLE__)
if (bind(sfd, (const struct sockaddr *)rp->ai_addr, rp->ai_addrlen) < 0)
#else
if (bind(sfd, rp->ai_addr, rp->ai_addrlen) < 0)
#endif
{
mfem::err << "isockstream::establish(): bind() failed!" << endl;
close(sfd);
error = 3;
continue;
}
break;
}
// No address succeeded
if (rp == NULL)
{
mfem::err << "Could not bind\n";
return (-1);
}
int on=1;
setsockopt(port, SOL_SOCKET, SO_REUSEADDR, (char *)(&on), sizeof(on));
if (bind(port,(const sockaddr*)&sa,(socklen_t)sizeof(struct sockaddr_in)) < 0)
{
mfem::err << "isockstream::establish(): bind() failed!" << endl;
close(port);
error = 3;
return (-1);
}
listen(port, 4);
error = 0;
return (port);
freeaddrinfo(res);
listen(sfd, 4);
return (sfd);
}
int isockstream::read_data(int s, char *buf, int n)
+35 -31
View File
@@ -19,15 +19,15 @@
#include <cstring> // memset, memcpy, strerror
#include <cerrno> // errno
#ifndef _WIN32
#include <netdb.h> // gethostbyname
#include <netdb.h> // getaddrinfo
#include <arpa/inet.h> // htons
#include <sys/types.h> // socket, setsockopt, connect, recv, send
#include <sys/socket.h> // socket, setsockopt, connect, recv, send
#include <unistd.h> // close
#include <netinet/in.h> // sockaddr_in
#define closesocket (::close)
#else
#include <winsock.h>
#include <winsock2.h>
#include <ws2tcpip.h>
#ifdef _MSC_VER
typedef int ssize_t;
// Link with ws2_32.lib
@@ -93,8 +93,7 @@ int socketbuf::attach(int sd)
int socketbuf::open(const char hostname[], int port)
{
struct sockaddr_in sa;
struct hostent *hp;
struct addrinfo hints, *res, *rp;
if (!wsInit_.Initialized())
{
@@ -105,42 +104,47 @@ int socketbuf::open(const char hostname[], int port)
setg(NULL, NULL, NULL);
setp(obuf, obuf + buflen);
hp = gethostbyname(hostname);
if (hp == NULL)
hints.ai_family = AF_UNSPEC;
hints.ai_socktype = SOCK_STREAM;
hints.ai_protocol = 0;
int s = getaddrinfo(hostname, NULL, &hints, &res);
if (s != 0)
{
socket_descriptor = -3;
return -1;
}
memset(&sa, 0, sizeof(sa));
memcpy((char *)&sa.sin_addr, hp->h_addr, hp->h_length);
sa.sin_family = hp->h_addrtype;
sa.sin_port = htons(port);
socket_descriptor = socket(hp->h_addrtype, SOCK_STREAM, 0);
if (socket_descriptor < 0)
for (rp = res; rp != NULL; rp = rp->ai_next)
{
return -1;
}
socket_descriptor = socket(rp->ai_family, rp->ai_socktype, rp->ai_protocol);
if (socket_descriptor < 0)
{
continue;
}
#if defined __APPLE__
// OS X does not support the MSG_NOSIGNAL option of send().
// Instead we can use the SO_NOSIGPIPE socket option.
int on = 1;
if (setsockopt(socket_descriptor, SOL_SOCKET, SO_NOSIGPIPE,
(char *)(&on), sizeof(on)) < 0)
{
closesocket(socket_descriptor);
socket_descriptor = -2;
return -1;
}
// OS X does not support the MSG_NOSIGNAL option of send().
// Instead we can use the SO_NOSIGPIPE socket option.
int on = 1;
if (setsockopt(socket_descriptor, SOL_SOCKET, SO_NOSIGPIPE,
&on, sizeof(on)) < 0)
{
closesocket(socket_descriptor);
socket_descriptor = -2;
return -1;
}
#endif
if (connect(socket_descriptor,
(const struct sockaddr *)&sa, sizeof(sa)) < 0)
{
closesocket(socket_descriptor);
socket_descriptor = -2;
return -1;
if (connect(socket_descriptor, rp->ai_addr, rp->ai_addrlen) < 0)
{
closesocket(socket_descriptor);
socket_descriptor = -2;
continue;
}
}
freeaddrinfo(res);
return 0;
}
+442 -209
View File
@@ -16,238 +16,471 @@
#include "strumpack.hpp"
using namespace std;
using namespace strumpack;
namespace mfem
{
STRUMPACKRowLocMatrix::STRUMPACKRowLocMatrix(MPI_Comm comm,
int num_loc_rows, int first_loc_row,
int glob_nrows, int glob_ncols,
int *I, int *J, double *data)
: comm_(comm), A_(NULL)
int num_loc_rows,
HYPRE_BigInt first_loc_row,
HYPRE_BigInt glob_nrows,
HYPRE_BigInt glob_ncols,
int *I, HYPRE_BigInt *J,
double *data, bool sym_sparse)
{
// Set mfem::Operator member data
height = num_loc_rows;
width = num_loc_rows;
// Allocate STRUMPACK's CSRMatrixMPI
int nprocs, rank;
MPI_Comm_rank(comm_, &rank);
MPI_Comm_size(comm_, &nprocs);
int * dist = new int[nprocs + 1];
dist[rank + 1] = first_loc_row + num_loc_rows;
// Allocate STRUMPACK's CSRMatrixMPI (copies all inputs)
int rank, nprocs;
MPI_Comm_rank(comm, &rank);
MPI_Comm_size(comm, &nprocs);
Array<HYPRE_BigInt> dist(nprocs + 1);
dist[0] = 0;
MPI_Allgather(MPI_IN_PLACE, 0, MPI_INT, dist + 1, 1, MPI_INT, comm_);
A_ = new CSRMatrixMPI<double,int>(num_loc_rows, I, J, data, dist, comm_, false);
delete[] dist;
}
dist[rank + 1] = first_loc_row + (HYPRE_BigInt)num_loc_rows;
MPI_Allgather(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL,
dist.GetData() + 1, 1, HYPRE_MPI_BIG_INT, comm);
STRUMPACKRowLocMatrix::STRUMPACKRowLocMatrix(const HypreParMatrix & hypParMat)
: comm_(hypParMat.GetComm()),
A_(NULL)
{
// First cast the parameter to a hypre_ParCSRMatrix
hypre_ParCSRMatrix * parcsr_op =
(hypre_ParCSRMatrix *)const_cast<HypreParMatrix&>(hypParMat);
MFEM_ASSERT(parcsr_op != NULL,"STRUMPACK: const_cast failed in SetOperator");
// Create the CSRMatrixMPI A_ by borrowing the internal data from a
// hypre_CSRMatrix.
hypParMat.HostRead();
hypre_CSRMatrix * csr_op = hypre_MergeDiagAndOffd(parcsr_op);
hypParMat.HypreRead();
hypre_CSRMatrixSetDataOwner(csr_op,0);
#if MFEM_HYPRE_VERSION >= 21600
// For now, this method assumes that HYPRE_Int is int. Also, csr_op->num_cols
// is of type HYPRE_Int, so if we want to check for big indices in
// csr_op->big_j, we'll have to check all entries and that check will only be
// necessary in HYPRE_MIXEDINT mode which is not supported at the moment.
hypre_CSRMatrixBigJtoJ(csr_op);
#endif
height = csr_op->num_rows;
width = csr_op->num_rows;
int nprocs, rank;
MPI_Comm_rank(comm_, &rank);
MPI_Comm_size(comm_, &nprocs);
int * dist = new int[nprocs + 1];
dist[rank + 1] = parcsr_op->first_row_index + csr_op->num_rows;
dist[0] = 0;
MPI_Allgather(MPI_IN_PLACE, 0, MPI_INT, dist + 1, 1, MPI_INT, comm_);
A_ = new CSRMatrixMPI<double,int>(csr_op->num_rows, csr_op->i, csr_op->j,
csr_op->data, dist, comm_, false);
delete[] dist;
// Everything has been copied or abducted so delete the structure
hypre_CSRMatrixDestroy(csr_op);
}
STRUMPACKRowLocMatrix::~STRUMPACKRowLocMatrix()
{
// Delete the struct
if ( A_ != NULL ) { delete A_; }
}
STRUMPACKSolver::STRUMPACKSolver( int argc, char* argv[], MPI_Comm comm )
: comm_(comm),
APtr_(NULL),
solver_(NULL)
{
this->Init(argc, argv);
}
STRUMPACKSolver::STRUMPACKSolver( STRUMPACKRowLocMatrix & A )
: comm_(A.GetComm()),
APtr_(&A),
solver_(NULL)
{
height = A.Height();
width = A.Width();
this->Init(0, NULL);
}
STRUMPACKSolver::~STRUMPACKSolver()
{
if ( solver_ != NULL ) { delete solver_; }
}
void STRUMPACKSolver::Init( int argc, char* argv[] )
{
MPI_Comm_size(comm_, &numProcs_);
MPI_Comm_rank(comm_, &myid_);
factor_verbose_ = false;
solve_verbose_ = false;
solver_ = new StrumpackSparseSolverMPIDist<double,int>(comm_, argc, argv,
false);
}
void STRUMPACKSolver::SetFromCommandLine( )
{
solver_->options().set_from_command_line( );
}
void STRUMPACKSolver::SetPrintFactorStatistics( bool print_stat )
{
factor_verbose_ = print_stat;
}
void STRUMPACKSolver::SetPrintSolveStatistics( bool print_stat )
{
solve_verbose_ = print_stat;
}
void STRUMPACKSolver::SetKrylovSolver( strumpack::KrylovSolver method )
{
solver_->options().set_Krylov_solver( method );
}
void STRUMPACKSolver::SetReorderingStrategy( strumpack::ReorderingStrategy
method )
{
solver_->options().set_reordering_method( method );
}
void STRUMPACKSolver::DisableMatching( )
{
#if STRUMPACK_VERSION_MAJOR >= 3
solver_->options().set_matching( strumpack::MatchingJob::NONE );
#if !(defined(HYPRE_BIGINT) || defined(HYPRE_MIXEDINT))
A_ = new strumpack::CSRMatrixMPI<double, HYPRE_BigInt>(
(HYPRE_BigInt)num_loc_rows, I, J, data, dist.GetData(),
comm, sym_sparse);
#else
solver_->options().set_mc64job( strumpack::MC64Job::NONE );
Array<HYPRE_BigInt> II(num_loc_rows+1);
for (int i = 0; i <= num_loc_rows; i++) { II[i] = (HYPRE_BigInt)I[i]; }
A_ = new strumpack::CSRMatrixMPI<double, HYPRE_BigInt>(
(HYPRE_BigInt)num_loc_rows, II.GetData(), J, data, dist.GetData(),
comm, sym_sparse);
#endif
}
void STRUMPACKSolver::EnableMatching( )
STRUMPACKRowLocMatrix::STRUMPACKRowLocMatrix(const Operator &op,
bool sym_sparse)
{
#if STRUMPACK_VERSION_MAJOR >= 3
solver_->options().set_matching
( strumpack::MatchingJob::MAX_DIAGONAL_PRODUCT_SCALING );
#else
solver_->options().set_mc64job
( strumpack::MC64Job::MAX_DIAGONAL_PRODUCT_SCALING );
#endif
}
#if STRUMPACK_VERSION_MAJOR >= 3
void STRUMPACKSolver::EnableParallelMatching( )
{
solver_->options().set_matching
( strumpack::MatchingJob::COMBBLAS );
}
#endif
void STRUMPACKSolver::SetRelTol( double rtol )
{
solver_->options().set_rel_tol( rtol );
}
void STRUMPACKSolver::SetAbsTol( double atol )
{
solver_->options().set_abs_tol( atol );
}
void STRUMPACKSolver::Mult( const Vector & x, Vector & y ) const
{
MFEM_ASSERT(APtr_ != NULL,
"STRUMPACK Error: The operator must be set before"
" the system can be solved.");
MFEM_ASSERT(x.Size() == Width(), "invalid x.Size() = " << x.Size()
<< ", expected size = " << Width());
MFEM_ASSERT(y.Size() == Height(), "invalid y.Size() = " << y.Size()
<< ", expected size = " << Height());
double* yPtr = y.HostWrite();
const double* xPtr = x.HostRead();
solver_->options().set_verbose( factor_verbose_ );
ReturnCode ret = solver_->factor();
switch (ret)
{
case ReturnCode::SUCCESS: break;
case ReturnCode::MATRIX_NOT_SET:
{
MFEM_ABORT("STRUMPACK: Matrix was not set!");
}
break;
case ReturnCode::REORDERING_ERROR:
{
MFEM_ABORT("STRUMPACK: Matrix reordering failed!");
}
break;
default:
{
MFEM_ABORT("STRUMPACK: 'factor()' error code = " << ret);
}
}
solver_->options().set_verbose( solve_verbose_ );
solver_->solve(xPtr, yPtr);
}
void STRUMPACKSolver::SetOperator( const Operator & op )
{
// Verify that we have a compatible operator
APtr_ = dynamic_cast<const STRUMPACKRowLocMatrix*>(&op);
if ( APtr_ == NULL )
{
mfem_error("STRUMPACKSolver::SetOperator : not STRUMPACKRowLocMatrix!");
}
solver_->set_matrix( *(APtr_->getA()) );
const HypreParMatrix *APtr = dynamic_cast<const HypreParMatrix *>(&op);
MFEM_VERIFY(APtr, "Not a compatible matrix type");
MPI_Comm comm = APtr->GetComm();
// Set mfem::Operator member data
height = op.Height();
width = op.Width();
// First cast the parameter to a hypre_ParCSRMatrix
hypre_ParCSRMatrix *parcsr_op =
(hypre_ParCSRMatrix *)const_cast<HypreParMatrix &>(*APtr);
// Create the CSRMatrixMPI A by taking the internal data from a
// hypre_CSRMatrix
APtr->HostRead();
hypre_CSRMatrix *csr_op = hypre_MergeDiagAndOffd(parcsr_op);
APtr->HypreRead();
HYPRE_Int *Iptr = csr_op->i;
#if MFEM_HYPRE_VERSION >= 21600
HYPRE_BigInt *Jptr = csr_op->big_j;
#else
HYPRE_Int *Jptr = csr_op->j;
#endif
double *data = csr_op->data;
HYPRE_BigInt fst_row = parcsr_op->first_row_index;
HYPRE_Int m_loc = csr_op->num_rows;
// Allocate STRUMPACK's CSRMatrixMPI
int rank, nprocs;
MPI_Comm_rank(comm, &rank);
MPI_Comm_size(comm, &nprocs);
Array<HYPRE_BigInt> dist(nprocs + 1);
dist[0] = 0;
dist[rank + 1] = fst_row + (HYPRE_BigInt)m_loc;
MPI_Allgather(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL,
dist.GetData() + 1, 1, HYPRE_MPI_BIG_INT, comm);
#if !defined(HYPRE_MIXEDINT)
A_ = new strumpack::CSRMatrixMPI<double, HYPRE_BigInt>(
(HYPRE_BigInt)m_loc, Iptr, Jptr, data, dist.GetData(),
comm, sym_sparse);
#else
Array<HYPRE_BigInt> II(m_loc+1);
for (int i = 0; i <= m_loc; i++) { II[i] = (HYPRE_BigInt)Iptr[i]; }
A_ = new strumpack::CSRMatrixMPI<double, HYPRE_BigInt>(
(HYPRE_BigInt)m_loc, II.GetData(), Jptr, data, dist.GetData(),
comm, sym_sparse);
#endif
// Everything has been copied so delete the structure
hypre_CSRMatrixDestroy(csr_op);
}
STRUMPACKRowLocMatrix::~STRUMPACKRowLocMatrix()
{
delete A_;
}
template <typename STRUMPACKSolverType>
STRUMPACKSolverBase<STRUMPACKSolverType>::
STRUMPACKSolverBase(MPI_Comm comm, int argc, char *argv[])
: APtr_(NULL),
factor_verbose_(false),
solve_verbose_(false),
reorder_reuse_(false),
nrhs_(-1)
{
solver_ = new STRUMPACKSolverType(comm, argc, argv, false);
}
template <typename STRUMPACKSolverType>
STRUMPACKSolverBase<STRUMPACKSolverType>::
STRUMPACKSolverBase(STRUMPACKRowLocMatrix &A, int argc, char *argv[])
: APtr_(&A),
factor_verbose_(false),
solve_verbose_(false),
reorder_reuse_(false),
nrhs_(-1)
{
solver_ = new STRUMPACKSolverType(A.GetComm(), argc, argv, false);
SetOperator(A);
}
template <typename STRUMPACKSolverType>
STRUMPACKSolverBase<STRUMPACKSolverType>::
~STRUMPACKSolverBase()
{
delete solver_;
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
SetFromCommandLine()
{
solver_->options().set_from_command_line();
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
SetPrintFactorStatistics(bool print_stat)
{
factor_verbose_ = print_stat;
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
SetPrintSolveStatistics(bool print_stat)
{
solve_verbose_ = print_stat;
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>
::SetRelTol(double rtol)
{
solver_->options().set_rel_tol(rtol);
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>
::SetAbsTol(double atol)
{
solver_->options().set_abs_tol(atol);
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>
::SetMaxIter(int max_it)
{
solver_->options().set_maxit(max_it);
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>
::SetReorderingReuse(bool reuse)
{
reorder_reuse_ = reuse;
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>
::EnableGPU()
{
solver_->options().enable_gpu();
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>
::DisableGPU()
{
solver_->options().disable_gpu();
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
SetKrylovSolver(strumpack::KrylovSolver method)
{
solver_->options().set_Krylov_solver(method);
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
SetReorderingStrategy(strumpack::ReorderingStrategy method)
{
solver_->options().set_reordering_method(method);
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
SetMatching(strumpack::MatchingJob job)
{
solver_->options().set_matching(job);
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
SetCompression(strumpack::CompressionType type)
{
#if STRUMPACK_VERSION_MAJOR >= 5
solver_->options().set_compression(type);
#else
switch (type)
{
case strumpack::NONE:
solver_->options().disable_BLR();
solver_->options().disable_HSS();
break;
case strumpack::BLR:
solver_->options().enable_BLR();
break;
case strumpack::HSS:
solver_->options().enable_HSS();
break;
default:
MFEM_ABORT("Invalid compression type for STRUMPACK version " <<
STRUMPACK_VERSION_MAJOR << "!");
break;
}
#endif
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
SetCompressionRelTol(double rtol)
{
#if STRUMPACK_VERSION_MAJOR >= 5
solver_->options().set_compression_rel_tol(rtol);
#else
solver_->options().BLR_options().set_rel_tol(rtol);
solver_->options().HSS_options().set_rel_tol(rtol);
#endif
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
SetCompressionAbsTol(double atol)
{
#if STRUMPACK_VERSION_MAJOR >= 5
solver_->options().set_compression_abs_tol(atol);
#else
solver_->options().BLR_options().set_abs_tol(atol);
solver_->options().HSS_options().set_abs_tol(atol);
#endif
}
#if STRUMPACK_VERSION_MAJOR >= 5
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
SetCompressionLossyPrecision(int precision)
{
solver_->options().set_lossy_precision(precision);
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
SetCompressionButterflyLevels(int levels)
{
solver_->options().HODLR_options().set_butterfly_levels(levels);
}
#endif
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
SetOperator(const Operator &op)
{
// Verify that we have a compatible operator
bool first_mat = !APtr_;
APtr_ = dynamic_cast<const STRUMPACKRowLocMatrix *>(&op);
MFEM_VERIFY(APtr_,
"STRUMPACK: Operator is not a STRUMPACKRowLocMatrix!");
// Set mfem::Operator member data
height = op.Height();
width = op.Width();
if (first_mat || !reorder_reuse_)
{
solver_->set_matrix(*(APtr_->GetA()));
}
else
{
solver_->update_matrix_values(*(APtr_->GetA()));
}
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
FactorInternal() const
{
MFEM_ASSERT(APtr_,
"STRUMPACK: Operator must be set before the system can be "
"solved!");
solver_->options().set_verbose(factor_verbose_);
strumpack::ReturnCode ret = solver_->factor();
if (ret != strumpack::ReturnCode::SUCCESS)
{
#if STRUMPACK_VERSION_MAJOR >= 7
MFEM_ABORT("STRUMPACK: Factor failed with return code " << ret << "!");
#else
MFEM_ABORT("STRUMPACK: Factor failed!");
#endif
}
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
Mult(const Vector &x, Vector &y) const
{
MFEM_ASSERT(x.Size() == Width(),
"STRUMPACK: Invalid x.Size() = " << x.Size() <<
", expected size = " << Width() << "!");
MFEM_ASSERT(y.Size() == Height(),
"STRUMPACK: Invalid y.Size() = " << y.Size() <<
", expected size = " << Height() << "!");
const double *xPtr = x.HostRead();
double *yPtr = y.HostReadWrite();
FactorInternal();
solver_->options().set_verbose(solve_verbose_);
strumpack::ReturnCode ret = solver_->solve(xPtr, yPtr, false);
if (ret != strumpack::ReturnCode::SUCCESS)
{
#if STRUMPACK_VERSION_MAJOR >= 7
MFEM_ABORT("STRUMPACK: Solve failed with return code " << ret << "!");
#else
MFEM_ABORT("STRUMPACK: Solve failed!");
#endif
}
}
template <typename STRUMPACKSolverType>
void STRUMPACKSolverBase<STRUMPACKSolverType>::
ArrayMult(const Array<const Vector *> &X, Array<Vector *> &Y) const
{
MFEM_ASSERT(X.Size() == Y.Size(),
"Number of columns mismatch in STRUMPACK solve!");
if (X.Size() == 1)
{
nrhs_ = 1;
MFEM_ASSERT(X[0] && Y[0], "Missing Vector in STRUMPACK solve!");
Mult(*X[0], *Y[0]);
return;
}
// Multiple RHS case
int ldx = Height();
if (nrhs_ != X.Size())
{
rhs_.SetSize(X.Size() * ldx);
sol_.SetSize(X.Size() * ldx);
nrhs_ = X.Size();
}
for (int i = 0; i < nrhs_; i++)
{
MFEM_ASSERT(X[i] && X[i]->Size() == Width(),
"STRUMPACK: Missing or invalid sized RHS Vector in solve!");
Vector s(rhs_, i * ldx, ldx);
s = *X[i];
rhs_.SyncMemory(s); // Update flags for rhs_ if updated on device
}
const double *xPtr = rhs_.HostRead();
double *yPtr = sol_.HostReadWrite();
FactorInternal();
solver_->options().set_verbose(solve_verbose_);
strumpack::ReturnCode ret = solver_->solve(nrhs_, xPtr, ldx, yPtr, ldx,
false);
if (ret != strumpack::ReturnCode::SUCCESS)
{
#if STRUMPACK_VERSION_MAJOR >= 7
MFEM_ABORT("STRUMPACK: Solve failed with return code " << ret << "!");
#else
MFEM_ABORT("STRUMPACK: Solve failed!");
#endif
}
for (int i = 0; i < nrhs_; i++)
{
MFEM_ASSERT(Y[i] && Y[i]->Size() == Width(),
"STRUMPACK: Missing or invalid sized solution Vector in solve!");
Vector s(sol_, i * ldx, ldx);
*Y[i] = s;
}
}
STRUMPACKSolver::
STRUMPACKSolver(MPI_Comm comm)
: STRUMPACKSolverBase<strumpack::
SparseSolverMPIDist<double, HYPRE_BigInt>>
(comm, 0, NULL) {}
STRUMPACKSolver::
STRUMPACKSolver(STRUMPACKRowLocMatrix &A)
: STRUMPACKSolverBase<strumpack::
SparseSolverMPIDist<double, HYPRE_BigInt>>
(A, 0, NULL) {}
STRUMPACKSolver::
STRUMPACKSolver(MPI_Comm comm, int argc, char *argv[])
: STRUMPACKSolverBase<strumpack::
SparseSolverMPIDist<double, HYPRE_BigInt>>
(comm, argc, argv) {}
STRUMPACKSolver::
STRUMPACKSolver(STRUMPACKRowLocMatrix &A, int argc, char *argv[])
: STRUMPACKSolverBase<strumpack::
SparseSolverMPIDist<double, HYPRE_BigInt>>
(A, argc, argv) {}
#if STRUMPACK_VERSION_MAJOR >= 7
STRUMPACKMixedPrecisionSolver::
STRUMPACKMixedPrecisionSolver(MPI_Comm comm)
: STRUMPACKSolverBase<strumpack::
SparseSolverMixedPrecisionMPIDist<float, double, HYPRE_BigInt>>
(comm, 0, NULL) {}
STRUMPACKMixedPrecisionSolver::
STRUMPACKMixedPrecisionSolver(STRUMPACKRowLocMatrix &A)
: STRUMPACKSolverBase<strumpack::
SparseSolverMixedPrecisionMPIDist<float, double, HYPRE_BigInt>>
(A, 0, NULL) {}
STRUMPACKMixedPrecisionSolver::
STRUMPACKMixedPrecisionSolver(MPI_Comm comm, int argc, char *argv[])
: STRUMPACKSolverBase<strumpack::
SparseSolverMixedPrecisionMPIDist<float, double, HYPRE_BigInt>>
(comm, argc, argv) {}
STRUMPACKMixedPrecisionSolver::
STRUMPACKMixedPrecisionSolver(STRUMPACKRowLocMatrix &A, int argc, char *argv[])
: STRUMPACKSolverBase<strumpack::
SparseSolverMixedPrecisionMPIDist<float, double, HYPRE_BigInt>>
(A, argc, argv) {}
#endif
template class STRUMPACKSolverBase<strumpack::
SparseSolverMPIDist<double, HYPRE_BigInt>>;
#if STRUMPACK_VERSION_MAJOR >= 7
template class STRUMPACKSolverBase<strumpack::
SparseSolverMixedPrecisionMPIDist<float, double, HYPRE_BigInt>>;
#endif
} // mfem namespace
#endif // MFEM_USE_MPI
+169 -67
View File
@@ -16,12 +16,14 @@
#ifdef MFEM_USE_STRUMPACK
#ifdef MFEM_USE_MPI
#include "operator.hpp"
#include "hypre.hpp"
#include <mpi.h>
// STRUMPACK headers
#include "StrumpackSparseSolverMPIDist.hpp"
#include "StrumpackSparseSolverMixedPrecisionMPIDist.hpp"
namespace mfem
{
@@ -34,63 +36,80 @@ public:
be of size (local) nrows by (global) glob_ncols. The new parallel matrix
contains copies of all input arrays (so they can be deleted). */
STRUMPACKRowLocMatrix(MPI_Comm comm,
int num_loc_rows, int first_loc_row,
int glob_nrows, int glob_ncols,
int *I, int *J, double *data);
int num_loc_rows, HYPRE_BigInt first_loc_row,
HYPRE_BigInt glob_nrows, HYPRE_BigInt glob_ncols,
int *I, HYPRE_BigInt *J, double *data,
bool sym_sparse = false);
/** Creates a copy of the parallel matrix hypParMat in STRUMPACK's RowLoc
format. All data is copied so the original matrix may be deleted. */
STRUMPACKRowLocMatrix(const HypreParMatrix & hypParMat);
STRUMPACKRowLocMatrix(const Operator &op, bool sym_sparse = false);
~STRUMPACKRowLocMatrix();
void Mult(const Vector &x, Vector &y) const
{
mfem_error("STRUMPACKRowLocMatrix::Mult(...)\n"
" matrix vector products are not supported.");
MFEM_ABORT("STRUMPACKRowLocMatrix::Mult: Matrix vector products are not "
"supported!");
}
MPI_Comm GetComm() const { return comm_; }
MPI_Comm GetComm() const { return A_->comm(); }
strumpack::CSRMatrixMPI<double,int>* getA() const { return A_; }
strumpack::CSRMatrixMPI<double, HYPRE_BigInt> *GetA() const { return A_; }
private:
MPI_Comm comm_;
strumpack::CSRMatrixMPI<double,int>* A_;
}; // mfem::STRUMPACKRowLocMatrix
strumpack::CSRMatrixMPI<double, HYPRE_BigInt> *A_;
};
/** The MFEM STRUMPACK Direct Solver class.
The mfem::STRUMPACKSolver class uses the STRUMPACK library to perform LU
factorization of a parallel sparse matrix. The solver is capable of handling
double precision types. See http://portal.nersc.gov/project/sparse/strumpack
double precision types. See
http://portal.nersc.gov/project/sparse/strumpack/.
*/
class STRUMPACKSolver : public mfem::Solver
template <typename STRUMPACKSolverType>
class STRUMPACKSolverBase : public Solver
{
protected:
// Constructor with MPI_Comm parameter and command line arguments.
STRUMPACKSolverBase(MPI_Comm comm, int argc, char *argv[]);
// Constructor with STRUMPACK matrix object and command line arguments.
STRUMPACKSolverBase(STRUMPACKRowLocMatrix &A, int argc, char *argv[]);
public:
// Constructor with MPI_Comm parameter.
STRUMPACKSolver( int argc, char* argv[], MPI_Comm comm );
// Constructor with STRUMPACK Matrix Object.
STRUMPACKSolver( STRUMPACKRowLocMatrix & A);
// Default destructor.
~STRUMPACKSolver( void );
virtual ~STRUMPACKSolverBase();
// Factor and solve the linear system y = Op^{-1} x.
void Mult( const Vector & x, Vector & y ) const;
void Mult(const Vector &x, Vector &y) const;
void ArrayMult(const Array<const Vector *> &X, Array<Vector *> &Y) const;
// Set the operator.
void SetOperator( const Operator & op );
void SetOperator(const Operator &op);
// Set various solver options. Refer to STRUMPACK documentation for
// details.
void SetFromCommandLine( );
void SetPrintFactorStatistics( bool print_stat );
void SetPrintSolveStatistics( bool print_stat );
void SetRelTol( double rtol );
void SetAbsTol( double atol );
void SetFromCommandLine();
void SetPrintFactorStatistics(bool print_stat);
void SetPrintSolveStatistics(bool print_stat);
// Set tolerances and iterations for iterative solvers. Compression
// tolerance is handled below.
void SetRelTol(double rtol);
void SetAbsTol(double atol);
void SetMaxIter(int max_it);
// Set the flag controlling reuse of the symbolic factorization for multiple
// operators. This method has to be called before repeated calls to
// SetOperator.
void SetReorderingReuse(bool reuse);
// Enable or not GPU off-loading available if STRUMPACK was compiled with CUDA. Note
// that input/output from MFEM to STRUMPACK is all still through host memory.
void EnableGPU();
void DisableGPU();
/**
* STRUMPACK is an (approximate) direct solver. It can be used as a direct
@@ -100,70 +119,153 @@ public:
* used without preconditioner.
*
* Supported values are:
* AUTO: Use iterative refinement if no HSS compression is used,
* otherwise use GMRes.
* DIRECT: No outer iterative solver, just a single application of
* the multifrontal solver.
* REFINE: Iterative refinement.
* PREC_GMRES: Preconditioned GMRes.
* The preconditioner is the (approx) multifrontal solver.
* GMRES: UN-preconditioned GMRes. (for testing mainly)
* PREC_BICGSTAB: Preconditioned BiCGStab.
* The preconditioner is the (approx) multifrontal solver.
* AUTO: Use iterative refinement if no HSS compression is
* used, otherwise use GMRes
* DIRECT: No outer iterative solver, just a single application
* of the multifrontal solver
* REFINE: Iterative refinement
* PREC_GMRES: Preconditioned GMRes
* The preconditioner is the (approx) multifrontal solver
* GMRES: UN-preconditioned GMRes (for testing mainly)
* PREC_BICGSTAB: Preconditioned BiCGStab
* The preconditioner is the (approx) multifrontal solver
* BICGSTAB: UN-preconditioned BiCGStab. (for testing mainly)
*/
void SetKrylovSolver( strumpack::KrylovSolver method );
void SetKrylovSolver(strumpack::KrylovSolver method);
/**
* Supported reorderings are:
* METIS, PARMETIS, SCOTCH, PTSCOTCH, RCM
* NATURAL: Do not reorder the system
* METIS: Use Metis nested-dissection reordering (default)
* PARMETIS: Use ParMetis nested-dissection reordering
* SCOTCH: Use Scotch nested-dissection reordering
* PTSCOTCH: Use PT-Scotch nested-dissection reordering
* RCM: Use RCM reordering
* GEOMETRIC: A simple geometric nested dissection code that
* only works for regular meshes
* AMD: Approximate minimum degree
* MMD: Multiple minimum degree
* AND: Nested dissection
* MLF: Minimum local fill
* SPECTRAL: Spectral nested dissection
*/
void SetReorderingStrategy( strumpack::ReorderingStrategy method );
void SetReorderingStrategy(strumpack::ReorderingStrategy method);
/**
* Disable static pivoting for stability. The static pivoting in strumpack
* Configure static pivoting for stability. The static pivoting in STRUMPACK
* permutes the sparse input matrix in order to get large (nonzero) elements
* on the diagonal. If the input matrix is already diagonally dominant, this
* reordering can be disabled.
*
* Supported matching algorithms are:
* NONE: Don't do anything
* MAX_CARDINALITY: Maximum cardinality
* MAX_SMALLEST_DIAGONAL: Maximum smallest diagonal value
* MAX_SMALLEST_DIAGONAL_2: Same as MAX_SMALLEST_DIAGONAL
* but different algorithm
* MAX_DIAGONAL_SUM: Maximum sum of diagonal values
* MAX_DIAGONAL_PRODUCT_SCALING: Maximum product of diagonal values
* and row and column scaling (default)
* COMBBLAS: Use AWPM from CombBLAS (only with
* version >= 3)
*/
void DisableMatching();
void SetMatching(strumpack::MatchingJob job);
/**
* Enable static pivoting for stability using the MC64 algorithm with
* job=5. Using a matching algorithm, this will permute the sparse input
* matrix in order to get nonzero elements (as large as possible) on the
* diagonal. And will also scale the rows and columns of the matrix.
* Enable support for rank-structured data formats, which can be used
* for compression within the sparse solver.
*
* Supported compression types are:
* NONE: No compression, purely direct solver (default)
* HSS: HSS compression of frontal matrices
* BLR: Block low-rank compression of fronts
* HODLR: Hierarchically Off-diagonal Low-Rank
* compression of frontal matrices
* BLR_HODLR: Block low-rank compression of medium
* fronts and Hierarchically Off-diagonal
* Low-Rank compression of large fronts
* ZFP_BLR_HODLR: ZFP compression for small fronts,
* Block low-rank compression of medium
* fronts and Hierarchically Off-diagonal
* Low-Rank compression of large fronts
* LOSSLESS: Lossless compression
* LOSSY: Lossy compression
*
* For versions of STRUMPACK < 5, we support only NONE, HSS, and BLR.
* BLR_HODLR and ZPR_BLR_HODLR are supported in STRUMPACK >= 6.
*/
void EnableMatching();
#if STRUMPACK_VERSION_MAJOR >= 3
/**
* Use the AWPM (approximate weight perfect matching) algorithm from the
* Combinatorial BLAS library for static pivoting, i.e. getting large
* nonzeros on the diagonal. This requires that strumpack was compiled with
* support for Combinatorial BLAS.
*/
void EnableParallelMatching();
void SetCompression(strumpack::CompressionType type);
void SetCompressionRelTol(double rtol);
void SetCompressionAbsTol(double atol);
#if STRUMPACK_VERSION_MAJOR >= 5
void SetCompressionLossyPrecision(int precision);
void SetCompressionButterflyLevels(int levels);
#endif
private:
void Init( int argc, char* argv[] );
// Helper method for calling the STRUMPACK factoriation routine.
void FactorInternal() const;
protected:
MPI_Comm comm_;
int numProcs_;
int myid_;
const STRUMPACKRowLocMatrix *APtr_;
STRUMPACKSolverType *solver_;
bool factor_verbose_;
bool solve_verbose_;
bool reorder_reuse_;
const STRUMPACKRowLocMatrix * APtr_;
strumpack::StrumpackSparseSolverMPIDist<double,int> * solver_;
mutable Vector rhs_, sol_;
mutable int nrhs_;
};
}; // mfem::STRUMPACKSolver class
class STRUMPACKSolver :
public STRUMPACKSolverBase<strumpack::
SparseSolverMPIDist<double, HYPRE_BigInt>>
{
public:
// Constructor with MPI_Comm parameter.
STRUMPACKSolver(MPI_Comm comm);
} // mfem namespace
// Constructor with STRUMPACK matrix object.
STRUMPACKSolver(STRUMPACKRowLocMatrix &A);
// Constructor with MPI_Comm parameter and command line arguments.
STRUMPACKSolver(MPI_Comm comm, int argc, char *argv[]);
MFEM_DEPRECATED STRUMPACKSolver(int argc, char *argv[], MPI_Comm comm)
: STRUMPACKSolver(comm, argc, argv) {}
// Constructor with STRUMPACK matrix object and command line arguments.
STRUMPACKSolver(STRUMPACKRowLocMatrix &A, int argc, char *argv[]);
// Destructor.
~STRUMPACKSolver() {}
};
#if STRUMPACK_VERSION_MAJOR >= 7
class STRUMPACKMixedPrecisionSolver :
public STRUMPACKSolverBase<strumpack::
SparseSolverMixedPrecisionMPIDist<float, double, HYPRE_BigInt>>
{
public:
// Constructor with MPI_Comm parameter.
STRUMPACKMixedPrecisionSolver(MPI_Comm comm);
// Constructor with STRUMPACK matrix object.
STRUMPACKMixedPrecisionSolver(STRUMPACKRowLocMatrix &A);
// Constructor with MPI_Comm parameter and command line arguments.
STRUMPACKMixedPrecisionSolver(MPI_Comm comm, int argc, char *argv[]);
// Constructor with STRUMPACK matrix object and command line arguments.
STRUMPACKMixedPrecisionSolver(STRUMPACKRowLocMatrix &A,
int argc, char *argv[]);
// Destructor.
~STRUMPACKMixedPrecisionSolver() {}
};
#endif
} // namespace mfem
#endif // MFEM_USE_MPI
#endif // MFEM_USE_STRUMPACK
+1
View File
@@ -650,6 +650,7 @@ void SuperLUSolver::ArrayMult(const Array<const Vector *> &X,
MFEM_ASSERT(X[i], "Missing Vector in SuperLUSolver::Mult!");
Vector s(sol_, i * ldx, ldx);
s = *X[i];
sol_.SyncMemory(s); // Update flags for sol_ if updated on device
}
}
+8 -5
View File
@@ -35,10 +35,6 @@
namespace mfem
{
/** Count the number of entries in an array of doubles for which isfinite
is false, i.e. the entry is a NaN or +/-Inf. */
inline int CheckFinite(const double *v, const int n);
/// Define a shortcut for std::numeric_limits<double>::infinity()
#ifndef __CYGWIN__
inline double infinity()
@@ -444,7 +440,7 @@ public:
/** @brief Count the number of entries in the Vector for which isfinite
is false, i.e. the entry is a NaN or +/-Inf. */
int CheckFinite() const { return mfem::CheckFinite(HostRead(), size); }
int CheckFinite() const;
/// Destroys vector.
virtual ~Vector();
@@ -494,6 +490,8 @@ inline bool IsFinite(const double &val)
#endif
}
/** Count the number of entries in an array of doubles for which isfinite
is false, i.e. the entry is a NaN or +/-Inf. */
inline int CheckFinite(const double *v, const int n)
{
int bad = 0;
@@ -504,6 +502,11 @@ inline int CheckFinite(const double *v, const int n)
return bad;
}
inline int Vector::CheckFinite() const
{
return mfem::CheckFinite(HostRead(), size);
}
inline Vector::Vector(int s)
{
MFEM_ASSERT(s>=0,"Unexpected negative size.");
+82 -119
View File
@@ -384,6 +384,12 @@ void Mesh::GetElementTransformation(int i, IsoparametricTransformation *ElTr)
}
}
ElementTransformation *Mesh::GetElementTransformation(int i)
{
GetElementTransformation(i, &Transformation);
return &Transformation;
}
void Mesh::GetElementTransformation(int i, const Vector &nodes,
IsoparametricTransformation *ElTr)
{
@@ -428,19 +434,6 @@ void Mesh::GetElementTransformation(int i, const Vector &nodes,
}
}
ElementTransformation *Mesh::GetElementTransformation(int i)
{
GetElementTransformation(i, &Transformation);
return &Transformation;
}
ElementTransformation *Mesh::GetBdrElementTransformation(int i)
{
GetBdrElementTransformation(i, &BdrTransformation);
return &BdrTransformation;
}
void Mesh::GetBdrElementTransformation(int i, IsoparametricTransformation* ElTr)
{
ElTr->Attribute = GetBdrAttribute(i);
@@ -501,6 +494,12 @@ void Mesh::GetBdrElementTransformation(int i, IsoparametricTransformation* ElTr)
}
}
ElementTransformation *Mesh::GetBdrElementTransformation(int i)
{
GetBdrElementTransformation(i, &BdrTransformation);
return &BdrTransformation;
}
void Mesh::GetFaceTransformation(int FaceNo, IsoparametricTransformation *FTr)
{
FTr->Attribute = (Dim == 1) ? 1 : faces[FaceNo]->GetAttribute();
@@ -1102,7 +1101,7 @@ void Mesh::ApplyLocalSlaveTransformation(FaceElementTransformations &FT,
FaceElementTransformations *Mesh::GetBdrFaceTransformations(int BdrElemNo)
{
FaceElementTransformations *tr;
int fn = GetBdrFace(BdrElemNo);
int fn = GetBdrElementFaceIndex(BdrElemNo);
// Check if the face is interior, shared, or nonconforming.
if (FaceIsTrueInterior(fn) || faces_info[fn].NCFace >= 0)
@@ -1117,24 +1116,6 @@ FaceElementTransformations *Mesh::GetBdrFaceTransformations(int BdrElemNo)
return tr;
}
int Mesh::GetBdrFace(int BdrElemNo) const
{
int fn;
if (Dim == 3)
{
fn = be_to_face[BdrElemNo];
}
else if (Dim == 2)
{
fn = be_to_edge[BdrElemNo];
}
else
{
fn = boundary[BdrElemNo]->GetVertices()[0];
}
return fn;
}
Mesh::FaceInformation Mesh::GetFaceInformation(int f) const
{
FaceInformation face;
@@ -1448,7 +1429,7 @@ Array<int> Mesh::GetFaceToBdrElMap() const
face_to_be = -1;
for (int i = 0; i < NumOfBdrElements; i++)
{
face_to_be[GetBdrElementEdgeIndex(i)] = i;
face_to_be[GetBdrElementFaceIndex(i)] = i;
}
return face_to_be;
}
@@ -1539,7 +1520,6 @@ void Mesh::Destroy()
faces.DeleteAll();
faces_info.DeleteAll();
nc_faces_info.DeleteAll();
be_to_edge.DeleteAll();
be_to_face.DeleteAll();
// TODO:
@@ -1906,12 +1886,7 @@ int Mesh::AddBdrPoint(int v, int attr)
void Mesh::GenerateBoundaryElements()
{
int i, j;
Array<int> &be2face = (Dim == 2) ? be_to_edge : be_to_face;
// GenerateFaces();
for (i = 0; i < boundary.Size(); i++)
for (int i = 0; i < boundary.Size(); i++)
{
FreeElement(boundary[i]);
}
@@ -1924,22 +1899,24 @@ void Mesh::GenerateBoundaryElements()
// count the 'NumOfBdrElements'
NumOfBdrElements = 0;
for (i = 0; i < faces_info.Size(); i++)
for (int i = 0; i < faces_info.Size(); i++)
{
if (faces_info[i].Elem2No < 0) { NumOfBdrElements++; }
}
// Add the boundary elements
boundary.SetSize(NumOfBdrElements);
be2face.SetSize(NumOfBdrElements);
for (j = i = 0; i < faces_info.Size(); i++)
be_to_face.SetSize(NumOfBdrElements);
for (int i = 0, j = 0; i < faces_info.Size(); i++)
{
if (faces_info[i].Elem2No < 0)
{
boundary[j] = faces[i]->Duplicate(this);
be2face[j++] = i;
be_to_face[j++] = i;
}
}
// In 3D, 'bel_to_edge' is destroyed but it's not updated.
// Note: in 3D, 'bel_to_edge' is destroyed but it's not updated.
}
void Mesh::FinalizeCheck()
@@ -1969,7 +1946,7 @@ void Mesh::FinalizeTriMesh(int generate_edges, int refine, bool fix_orientation)
if (generate_edges)
{
el_to_edge = new Table;
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
GenerateFaces();
CheckBdrElementOrientation();
}
@@ -1997,7 +1974,7 @@ void Mesh::FinalizeQuadMesh(int generate_edges, int refine,
if (generate_edges)
{
el_to_edge = new Table;
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
GenerateFaces();
CheckBdrElementOrientation();
}
@@ -2299,8 +2276,7 @@ void Mesh::ReorderElements(const Array<int> &ordering, bool reorder_vertices)
// - edge_vertex - no need to rebuild
// - geom_factors - no need to rebuild
// - be_to_edge - 2D only
// - be_to_face - 3D only
// - be_to_face
// - Nodes
@@ -2386,9 +2362,9 @@ void Mesh::ReorderElements(const Array<int> &ordering, bool reorder_vertices)
if (Dim > 1)
{
// generate el_to_edge, be_to_edge (2D), bel_to_edge (3D)
// generate el_to_edge, be_to_face (2D), bel_to_edge (3D)
el_to_edge = new Table;
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
if (Dim > 2)
{
@@ -2778,8 +2754,8 @@ void Mesh::DoNodeReorder(DSTable *old_v_to_v, Table *old_elem_vert)
}
if (el_to_edge)
{
// update 'el_to_edge', 'be_to_edge' (2D), 'bel_to_edge' (3D)
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
// update 'el_to_edge', 'be_to_face' (2D), 'bel_to_edge' (3D)
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
if (Dim == 2)
{
// update 'faces' and 'faces_info'
@@ -2856,7 +2832,7 @@ void Mesh::FinalizeTetMesh(int generate_edges, int refine, bool fix_orientation)
if (generate_edges == 1)
{
el_to_edge = new Table;
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
else
{
@@ -2891,7 +2867,7 @@ void Mesh::FinalizeWedgeMesh(int generate_edges, int refine,
if (generate_edges == 1)
{
el_to_edge = new Table;
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
else
{
@@ -2923,7 +2899,7 @@ void Mesh::FinalizeHexMesh(int generate_edges, int refine, bool fix_orientation)
if (generate_edges)
{
el_to_edge = new Table;
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
else
{
@@ -3002,7 +2978,7 @@ void Mesh::FinalizeTopology(bool generate_bdr)
{
// el_to_edge may already be allocated (P2 VTK meshes)
if (!el_to_edge) { el_to_edge = new Table; }
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
if (Dim == 2)
{
GenerateFaces(); // 'Faces' in 2D refers to the edges
@@ -3022,8 +2998,17 @@ void Mesh::FinalizeTopology(bool generate_bdr)
GenerateFaces();
if (NumOfBdrElements == 0 && generate_bdr)
{
// be_to_face will be set inside GenerateBoundaryElements
GenerateBoundaryElements();
}
else
{
be_to_face.SetSize(NumOfBdrElements);
for (int i = 0; i < NumOfBdrElements; ++i)
{
be_to_face[i] = boundary[i]->GetVertices()[0];
}
}
}
if (ncmesh)
@@ -3555,7 +3540,7 @@ void Mesh::Make2D(int nx, int ny, Element::Type type,
if (generate_edges == 1)
{
el_to_edge = new Table;
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
GenerateFaces();
CheckBdrElementOrientation();
}
@@ -3613,6 +3598,11 @@ void Mesh::Make1D(int n, double sx)
SetMeshGen();
GenerateFaces();
// Set be_to_face
be_to_face.SetSize(2);
be_to_face[0] = 0;
be_to_face[1] = n;
attributes.Append(1);
bdr_attributes.Append(1); bdr_attributes.Append(2);
}
@@ -3666,9 +3656,6 @@ Mesh::Mesh(const Mesh &mesh, bool copy_nodes)
// Copy the boundary-to-edge Table, bel_to_edge (3D)
bel_to_edge = (mesh.bel_to_edge) ? new Table(*mesh.bel_to_edge) : NULL;
// Copy the boundary-to-edge Array, be_to_edge (2D)
mesh.be_to_edge.Copy(be_to_edge);
// Duplicate the faces and faces_info.
faces.SetSize(mesh.faces.Size());
for (int i = 0; i < faces.Size(); i++)
@@ -5269,7 +5256,7 @@ void Mesh::UpdateNURBS()
if (el_to_edge)
{
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
if (el_to_face)
@@ -6169,15 +6156,15 @@ int Mesh::CheckBdrElementOrientation(bool fix_it)
if (el_to_edge == NULL) // edges were not generated
{
el_to_edge = new Table;
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
GenerateFaces(); // 'Faces' in 2D refers to the edges
}
for (int i = 0; i < NumOfBdrElements; i++)
{
if (faces_info[be_to_edge[i]].Elem2No < 0) // boundary face
if (faces_info[be_to_face[i]].Elem2No < 0) // boundary face
{
int *bv = boundary[i]->GetVertices();
int *fv = faces[be_to_edge[i]]->GetVertices();
int *fv = faces[be_to_face[i]]->GetVertices();
if (bv[0] != fv[0])
{
if (fix_it)
@@ -6428,7 +6415,7 @@ void Mesh::GetBdrElementEdges(int i, Array<int> &edges, Array<int> &cor) const
{
edges.SetSize(1);
cor.SetSize(1);
edges[0] = be_to_edge[i];
edges[0] = be_to_face[i];
const int *v = boundary[i]->GetVertices();
cor[0] = (v[0] < v[1]) ? (1) : (-1);
}
@@ -6669,7 +6656,7 @@ Array<int> Mesh::FindFaceNeighbors(const int elem) const
void Mesh::GetBdrElementFace(int i, int *f, int *o) const
{
*f = GetBdrElementEdgeIndex(i);
*f = GetBdrElementFaceIndex(i);
const int *fv = (Dim > 1) ? faces[*f]->GetVertices() : NULL;
const int *bv = boundary[i]->GetVertices();
@@ -6686,21 +6673,9 @@ void Mesh::GetBdrElementFace(int i, int *f, int *o) const
}
}
int Mesh::GetBdrElementEdgeIndex(int i) const
{
switch (Dim)
{
case 1: return boundary[i]->GetVertices()[0];
case 2: return be_to_edge[i];
case 3: return be_to_face[i];
default: MFEM_ABORT("invalid dimension!");
}
return -1;
}
void Mesh::GetBdrElementAdjacentElement(int bdr_el, int &el, int &info) const
{
int fid = GetBdrElementEdgeIndex(bdr_el);
int fid = GetBdrElementFaceIndex(bdr_el);
const FaceInfo &fi = faces_info[fid];
MFEM_ASSERT(fi.Elem1Inf % 64 == 0, "internal error"); // orientation == 0
@@ -6722,7 +6697,7 @@ void Mesh::GetBdrElementAdjacentElement(int bdr_el, int &el, int &info) const
void Mesh::GetBdrElementAdjacentElement2(int bdr_el, int &el, int &info) const
{
int fid = GetBdrElementEdgeIndex(bdr_el);
int fid = GetBdrElementFaceIndex(bdr_el);
const FaceInfo &fi = faces_info[fid];
MFEM_ASSERT(fi.Elem1Inf % 64 == 0, "internal error"); // orientation == 0
@@ -6848,7 +6823,7 @@ void Mesh::GetVertexToVertexTable(DSTable &v_to_v) const
}
}
int Mesh::GetElementToEdgeTable(Table & e_to_f, Array<int> &be_to_f)
int Mesh::GetElementToEdgeTable(Table &e_to_f)
{
int i, NumberOfEdges;
@@ -6863,11 +6838,11 @@ int Mesh::GetElementToEdgeTable(Table & e_to_f, Array<int> &be_to_f)
if (Dim == 2)
{
// Initialize the indices for the boundary elements.
be_to_f.SetSize(NumOfBdrElements);
be_to_face.SetSize(NumOfBdrElements);
for (i = 0; i < NumOfBdrElements; i++)
{
const int *v = boundary[i]->GetVertices();
be_to_f[i] = v_to_v(v[0], v[1]);
be_to_face[i] = v_to_v(v[0], v[1]);
}
}
else if (Dim == 3)
@@ -7470,7 +7445,7 @@ void Mesh::ReorientTetMesh()
GenerateFaces();
if (el_to_edge)
{
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
}
else
@@ -8505,7 +8480,7 @@ void Mesh::UniformRefinement2D_base(bool update_nodes)
if (el_to_edge == NULL)
{
el_to_edge = new Table;
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
int quad_counter = 0;
@@ -8594,8 +8569,8 @@ void Mesh::UniformRefinement2D_base(bool update_nodes)
const int attr = boundary[i]->GetAttribute();
int *v = boundary[i]->GetVertices();
new_boundary[j++] = new Segment(v[0], oedge+be_to_edge[i], attr);
new_boundary[j++] = new Segment(oedge+be_to_edge[i], v[1], attr);
new_boundary[j++] = new Segment(v[0], oedge+be_to_face[i], attr);
new_boundary[j++] = new Segment(oedge+be_to_face[i], v[1], attr);
FreeElement(boundary[i]);
}
@@ -8635,7 +8610,7 @@ void Mesh::UniformRefinement2D_base(bool update_nodes)
NumOfBdrElements = 2 * NumOfBdrElements;
NumOfFaces = 0;
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
GenerateFaces();
last_operation = Mesh::REFINE;
@@ -8665,7 +8640,7 @@ void Mesh::UniformRefinement3D_base(Array<int> *f2qf_ptr, DSTable *v_to_v_p,
if (el_to_edge == NULL)
{
el_to_edge = new Table;
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
if (el_to_face == NULL)
@@ -9356,7 +9331,7 @@ void Mesh::UniformRefinement3D_base(Array<int> *f2qf_ptr, DSTable *v_to_v_p,
CheckBdrElementOrientation(false);
#endif
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
last_operation = Mesh::REFINE;
sequence++;
@@ -9490,7 +9465,7 @@ void Mesh::LocalRefinement(const Array<int> &marked_el, int type)
if (el_to_edge != NULL)
{
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
GenerateFaces();
}
@@ -9586,7 +9561,7 @@ void Mesh::LocalRefinement(const Array<int> &marked_el, int type)
// 5. Update element-to-edge and element-to-face relations.
if (el_to_edge != NULL)
{
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
if (el_to_face != NULL)
{
@@ -9777,7 +9752,7 @@ void Mesh::InitFromNCMesh(const NCMesh &ncmesh_)
if (Dim > 1)
{
el_to_edge = new Table;
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
if (Dim > 2)
{
@@ -9824,7 +9799,6 @@ void Mesh::Swap(Mesh& other, bool non_geometry)
mfem::Swap(el_to_edge, other.el_to_edge);
mfem::Swap(el_to_face, other.el_to_face);
mfem::Swap(el_to_el, other.el_to_el);
mfem::Swap(be_to_edge, other.be_to_edge);
mfem::Swap(bel_to_edge, other.bel_to_edge);
mfem::Swap(be_to_face, other.be_to_face);
mfem::Swap(face_edge, other.face_edge);
@@ -12279,9 +12253,9 @@ void Mesh::RemoveUnusedVertices()
DeleteTables();
if (Dim > 1)
{
// generate el_to_edge, be_to_edge (2D), bel_to_edge (3D)
// generate el_to_edge, be_to_face (2D), bel_to_edge (3D)
el_to_edge = new Table;
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
if (Dim > 2)
{
@@ -12312,7 +12286,7 @@ void Mesh::RemoveInternalBoundaries()
int new_bel_to_edge_nnz = 0;
for (int i = 0; i < GetNBE(); i++)
{
if (FaceIsInterior(GetBdrElementEdgeIndex(i)))
if (FaceIsInterior(GetBdrElementFaceIndex(i)))
{
FreeElement(boundary[i]);
}
@@ -12329,32 +12303,24 @@ void Mesh::RemoveInternalBoundaries()
if (num_bdr_elem == GetNBE()) { return; }
Array<Element *> new_boundary(num_bdr_elem);
Array<int> new_be_to_edge, new_be_to_face;
Array<int> new_be_to_face;
Table *new_bel_to_edge = NULL;
new_boundary.SetSize(0);
if (Dim == 2)
new_be_to_face.Reserve(num_bdr_elem);
if (Dim == 3)
{
new_be_to_edge.Reserve(num_bdr_elem);
}
else if (Dim == 3)
{
new_be_to_face.Reserve(num_bdr_elem);
new_bel_to_edge = new Table;
new_bel_to_edge->SetDims(num_bdr_elem, new_bel_to_edge_nnz);
}
for (int i = 0; i < GetNBE(); i++)
{
if (!FaceIsInterior(GetBdrElementEdgeIndex(i)))
if (!FaceIsInterior(GetBdrElementFaceIndex(i)))
{
new_boundary.Append(boundary[i]);
if (Dim == 2)
int row = new_be_to_face.Size();
new_be_to_face.Append(be_to_face[i]);
if (Dim == 3)
{
new_be_to_edge.Append(be_to_edge[i]);
}
else if (Dim == 3)
{
int row = new_be_to_face.Size();
new_be_to_face.Append(be_to_face[i]);
int *e = bel_to_edge->GetRow(i);
int ne = bel_to_edge->RowSize(i);
int *new_e = new_bel_to_edge->GetRow(row);
@@ -12370,13 +12336,10 @@ void Mesh::RemoveInternalBoundaries()
NumOfBdrElements = new_boundary.Size();
mfem::Swap(boundary, new_boundary);
if (Dim == 2)
mfem::Swap(be_to_face, new_be_to_face);
if (Dim == 3)
{
mfem::Swap(be_to_edge, new_be_to_edge);
}
else if (Dim == 3)
{
mfem::Swap(be_to_face, new_be_to_face);
delete bel_to_edge;
bel_to_edge = new_bel_to_edge;
}
+17 -11
View File
@@ -220,9 +220,9 @@ protected:
Table *el_to_edge;
Table *el_to_face;
Table *el_to_el;
Array<int> be_to_edge; // for 2D
Table *bel_to_edge; // for 3D
Array<int> be_to_face;
Array<int> be_to_face; // faces = vertices (1D), edges (2D), faces (3D)
Table *bel_to_edge; // for 3D only
// Note that the following tables are owned by this class and should not be
// deleted by the caller. Of these three tables, only face_edge and
@@ -533,7 +533,7 @@ protected:
nodes in the elements. For example, if T is the element to edge table
T(i, 0) gives the index of edge in element i that connects vertex 0
to vertex 1, etc. Returns the number of the edges. */
int GetElementToEdgeTable(Table &, Array<int> &);
int GetElementToEdgeTable(Table &);
/// Used in GenerateFaces()
void AddPointFaceElement(int lf, int gf, int el);
@@ -1367,11 +1367,6 @@ public:
GetElementEdges/GetBdrElementEdges. */
void GetBdrElementFace(int i, int *f, int *o) const;
/** Return the vertex index of boundary element i. (1D)
Return the edge index of boundary element i. (2D)
Return the face index of boundary element i. (3D) */
int GetBdrElementEdgeIndex(int i) const;
/** @brief For the given boundary element, bdr_el, return its adjacent
element and its info, i.e. 64*local_bdr_index+bdr_orientation.
@@ -1392,8 +1387,19 @@ public:
@sa GetBdrElementAdjacentElement() */
void GetBdrElementAdjacentElement2(int bdr_el, int &el, int &info) const;
/// Return the local face index for the given boundary face.
int GetBdrFace(int BdrElemNo) const;
/// @brief Return the local face (codimension-1) index for the given boundary
/// element index.
int GetBdrElementFaceIndex(int be_idx) const { return be_to_face[be_idx]; }
/// Deprecated in favor of GetBdrElementFaceIndex().
MFEM_DEPRECATED int GetBdrFace(int i) const { return GetBdrElementFaceIndex(i); }
/** Return the vertex index of boundary element i. (1D)
Return the edge index of boundary element i. (2D)
Return the face index of boundary element i. (3D)
Deprecated in favor of GetBdrElementFaceIndex(). */
MFEM_DEPRECATED int GetBdrElementEdgeIndex(int i) const { return GetBdrElementFaceIndex(i); }
/// @}
+22 -7
View File
@@ -186,7 +186,7 @@ ParMesh::ParMesh(MPI_Comm comm, Mesh &mesh, int *partitioning_,
if (Dim > 1)
{
el_to_edge = new Table;
NumOfEdges = Mesh::GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = Mesh::GetElementToEdgeTable(*el_to_edge);
}
STable3D *faces_tbl = NULL;
@@ -197,6 +197,19 @@ ParMesh::ParMesh(MPI_Comm comm, Mesh &mesh, int *partitioning_,
GenerateFaces();
// Make sure the be_to_face array is initialized.
// In 2D, it will be set in the above call to Mesh::GetElementToEdgeTable.
// In 3D, it will be set in GetElementToFaceTable.
// In 1D, we need to set it manually.
if (Dim == 1)
{
be_to_face.SetSize(NumOfBdrElements);
for (int i = 0; i < NumOfBdrElements; ++i)
{
be_to_face[i] = boundary[i]->GetVertices()[0];
}
}
ListOfIntegerSets groups;
{
// the first group is the local one
@@ -435,7 +448,7 @@ int ParMesh::BuildLocalBoundary(const Mesh& mesh, const int* partitioning,
for (int i = 0; i < mesh.GetNBE(); i++)
{
int edge = mesh.GetBdrElementEdgeIndex(i);
int edge = mesh.GetBdrElementFaceIndex(i);
int el1 = edge_element->GetRow(edge)[0];
if (partitioning[el1] == MyRank)
{
@@ -451,7 +464,7 @@ int ParMesh::BuildLocalBoundary(const Mesh& mesh, const int* partitioning,
boundary.SetSize(nbdry);
for (int i = 0; i < mesh.GetNBE(); i++)
{
int edge = mesh.GetBdrElementEdgeIndex(i);
int edge = mesh.GetBdrElementFaceIndex(i);
int el1 = edge_element->GetRow(edge)[0];
if (partitioning[el1] == MyRank)
{
@@ -3320,7 +3333,7 @@ void ParMesh::ReorientTetMesh()
GenerateFaces();
if (el_to_edge)
{
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
}
else
@@ -3555,7 +3568,7 @@ void ParMesh::LocalRefinement(const Array<int> &marked_el, int type)
// 6. Update element-to-edge relations.
if (el_to_edge != NULL)
{
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
} // 'if (Dim == 3)'
@@ -3793,7 +3806,7 @@ void ParMesh::LocalRefinement(const Array<int> &marked_el, int type)
if (el_to_edge != NULL)
{
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
GenerateFaces();
}
} // 'if (Dim == 2)'
@@ -3855,6 +3868,8 @@ void ParMesh::NonconformingRefinement(const Array<Refinement> &refinements,
"serial Mesh)");
}
ResetLazyData();
DeleteFaceNbrData();
// NOTE: no check of !refinements.Size(), in parallel we would have to reduce
@@ -5286,7 +5301,7 @@ Mesh ParMesh::GetSerialMesh(int save_rank) const
for (int e = 0; e < NumOfElements; e++)
{
const int attr = elements[e]->GetAttribute();
const int geom_type = elements[e]->GetGeometryType();;
const int geom_type = elements[e]->GetGeometryType();
ints.Append(attr);
ints.Append(geom_type);
pfespace_linear.GetElementDofs(e, dofs);
-3
View File
@@ -1028,9 +1028,6 @@ void ParPumiMesh::UpdateMesh(const ParMesh* AdaptedpMesh)
bel_to_edge = (AdaptedpMesh->bel_to_edge) ?
new Table(*(AdaptedpMesh->bel_to_edge)) : NULL;
// Copy the boudary-to-edge Array, be_to_edge (2D)
AdaptedpMesh->be_to_edge.Copy(be_to_edge);
// Duplicate the faces and faces_info.
faces.SetSize(AdaptedpMesh->faces.Size());
for (int i = 0; i < faces.Size(); i++)
+15 -9
View File
@@ -235,10 +235,13 @@ ParSubMesh::ParSubMesh(const ParMesh &parent, SubMesh::From from,
// Add boundaries
{
int num_of_faces_or_edges =
(Dim == 3) ? NumOfFaces :
((Dim == 2) ? NumOfEdges : NumOfVertices);
Array<int> &be2face = (Dim == 2) ? be_to_edge : be_to_face;
const int num_codim_1 = [this]()
{
if (Dim == 1) { return NumOfVertices; }
else if (Dim == 2) { return NumOfEdges; }
else if (Dim == 3) { return NumOfFaces; }
else { MFEM_ABORT("Invalid dimension."); return -1; }
}();
if (Dim == 3)
{
@@ -249,7 +252,7 @@ ParSubMesh::ParSubMesh(const ParMesh &parent, SubMesh::From from,
}
NumOfBdrElements = 0;
for (int i = 0; i < num_of_faces_or_edges; i++)
for (int i = 0; i < num_codim_1; i++)
{
if (GetFaceInformation(i).IsBoundary())
{
@@ -258,14 +261,17 @@ ParSubMesh::ParSubMesh(const ParMesh &parent, SubMesh::From from,
}
boundary.SetSize(NumOfBdrElements);
be2face.SetSize(NumOfBdrElements);
be_to_face.SetSize(NumOfBdrElements);
Array<int> parent_face_to_be = parent.GetFaceToBdrElMap();
int max_bdr_attr = parent.bdr_attributes.Max();
for (int i = 0, j = 0; i < num_of_faces_or_edges; i++)
for (int i = 0, j = 0; i < num_codim_1; i++)
{
if (GetFaceInformation(i).IsBoundary())
{
boundary[j] = faces[i]->Duplicate(this);
be_to_face[j] = i;
if (from == SubMesh::From::Domain && Dim >= 2)
{
int pbeid = Dim == 3 ? parent_face_to_be[parent_face_ids_[i]] :
@@ -283,7 +289,7 @@ ParSubMesh::ParSubMesh(const ParMesh &parent, SubMesh::From from,
{
boundary[j]->SetAttribute(SubMesh::GENERATED_ATTRIBUTE);
}
be2face[j++] = i;
++j;
}
}
}
@@ -323,7 +329,7 @@ ParSubMesh::ParSubMesh(const ParMesh &parent, SubMesh::From from,
if (Dim > 1)
{
if (!el_to_edge) { el_to_edge = new Table; }
NumOfEdges = GetElementToEdgeTable(*el_to_edge, be_to_edge);
NumOfEdges = GetElementToEdgeTable(*el_to_edge);
}
SetAttributes();
+7 -12
View File
@@ -317,8 +317,7 @@ ParTransferMap::CorrectFaceOrientations(const ParFiniteElementSpace &fes,
if (parent_face_ori.Size() == 0) { return; }
VDofTransformation vdoftrans(fes.GetVDim(),
fes.GetOrdering());
DofTransformation doftrans(fes.GetVDim(), fes.GetOrdering());
int dim = mesh->Dimension();
bool face = (dim == 3);
@@ -332,17 +331,13 @@ ParTransferMap::CorrectFaceOrientations(const ParFiniteElementSpace &fes,
if (parent_face_ori[i] == 0) { continue; }
Geometry::Type geom = face ? mesh->GetFaceGeometry(i) :
mesh->GetElementGeometry(i);;
mesh->GetElementGeometry(i);
StatelessDofTransformation * doftrans =
fec->DofTransformationForGeometry(geom);
if (doftrans == NULL) { continue; }
vdoftrans.SetDofTransformation(*doftrans);
if (!fec->DofTransformationForGeometry(geom)) { continue; }
doftrans.SetDofTransformation(*fec->DofTransformationForGeometry(geom));
Fo[0] = parent_face_ori[i];
vdoftrans.SetFaceOrientations(Fo);
doftrans.SetFaceOrientations(Fo);
if (face)
{
@@ -356,12 +351,12 @@ ParTransferMap::CorrectFaceOrientations(const ParFiniteElementSpace &fes,
if (sub_to_parent_map)
{
src.GetSubVector(vdofs, face_vector);
vdoftrans.TransformPrimal(face_vector);
doftrans.TransformPrimal(face_vector);
}
else
{
dst.GetSubVector(vdofs, face_vector);
vdoftrans.InvTransformPrimal(face_vector);
doftrans.InvTransformPrimal(face_vector);
}
for (int j = 0; j < vdofs.Size(); j++)
+2 -2
View File
@@ -65,7 +65,7 @@ SubMesh::SubMesh(const Mesh &parent, From from,
for (int i = 0; i < NumOfBdrElements; i++)
{
int pbeid = parent_face_to_be[parent_face_ids_[GetBdrFace(i)]];
int pbeid = parent_face_to_be[parent_face_ids_[GetBdrElementFaceIndex(i)]];
if (pbeid != -1)
{
int attr = parent.GetBdrElement(pbeid)->GetAttribute();
@@ -117,7 +117,7 @@ SubMesh::SubMesh(const Mesh &parent, From from,
for (int i = 0; i < NumOfBdrElements; i++)
{
int pbeid = parent_face_to_be[parent_edge_ids_[GetBdrFace(i)]];
int pbeid = parent_face_to_be[parent_edge_ids_[GetBdrElementFaceIndex(i)]];
if (pbeid != -1)
{
int attr = parent.GetBdrElement(pbeid)->GetAttribute();
+7 -12
View File
@@ -241,8 +241,7 @@ void TransferMap::CorrectFaceOrientations(const FiniteElementSpace &fes,
if (parent_face_ori.Size() == 0) { return; }
VDofTransformation vdoftrans(fes.GetVDim(),
fes.GetOrdering());
DofTransformation doftrans(fes.GetVDim(), fes.GetOrdering());
int dim = mesh->Dimension();
bool face = (dim == 3);
@@ -256,17 +255,13 @@ void TransferMap::CorrectFaceOrientations(const FiniteElementSpace &fes,
if (parent_face_ori[i] == 0) { continue; }
Geometry::Type geom = face ? mesh->GetFaceGeometry(i) :
mesh->GetElementGeometry(i);;
mesh->GetElementGeometry(i);
StatelessDofTransformation * doftrans =
fec->DofTransformationForGeometry(geom);
if (doftrans == NULL) { continue; }
vdoftrans.SetDofTransformation(*doftrans);
if (!fec->DofTransformationForGeometry(geom)) { continue; }
doftrans.SetDofTransformation(*fec->DofTransformationForGeometry(geom));
Fo[0] = parent_face_ori[i];
vdoftrans.SetFaceOrientations(Fo);
doftrans.SetFaceOrientations(Fo);
if (face)
{
@@ -280,12 +275,12 @@ void TransferMap::CorrectFaceOrientations(const FiniteElementSpace &fes,
if (sub_to_parent_map)
{
src.GetSubVector(vdofs, face_vector);
vdoftrans.TransformPrimal(face_vector);
doftrans.TransformPrimal(face_vector);
}
else
{
dst.GetSubVector(vdofs, face_vector);
vdoftrans.InvTransformPrimal(face_vector);
doftrans.InvTransformPrimal(face_vector);
}
for (int j = 0; j < vdofs.Size(); j++)
+1 -1
View File
@@ -1403,7 +1403,7 @@ void maxwell_solution_curlcurl(const Vector & X,
curlcurlE.resize(dim);
for (int i = 0; i < dim; ++i)
{
curlcurlE[i] = 0.0;;
curlcurlE[i] = 0.0;
}
switch (prob)
{
+1 -1
View File
@@ -278,4 +278,4 @@ void SolveCG(Operator &A, Solver &P, const Vector &B, Vector &X)
cout << "Done.\nIterations: " << cg.GetNumIterations()
<< "\nElapsed: " << tic_toc.RealTime() << endl;
}
};
}
+1 -1
View File
@@ -35,7 +35,7 @@
// Adapted analytic shape:
// mesh-optimizer -m square01.mesh -o 2 -rs 2 -mid 2 -tid 4 -ni 200 -bnd -qt 1 -qo 8
// Adapted analytic size+orientation:
// mesh-optimizer -m square01.mesh -o 2 -rs 2 -mid 14 -tid 4 -ni 100 -bnd -qt 1 -qo 8 -fd
// mesh-optimizer -m square01.mesh -o 2 -rs 2 -mid 14 -tid 4 -ni 100 -bnd -qt 1 -qo 8
// Adapted analytic shape+orientation:
// mesh-optimizer -m square01.mesh -o 2 -rs 2 -mid 85 -tid 4 -ni 100 -bnd -qt 1 -qo 8 -fd
//
+1 -1
View File
@@ -1012,7 +1012,7 @@ struct QuarterPeach: public Surface
for (int i = 0; i < GetNBE(); i++)
{
Element *el = GetBdrElement(i);
const int fn = GetBdrElementEdgeIndex(i);
const int fn = GetBdrElementFaceIndex(i);
MFEM_VERIFY(!FaceIsTrueInterior(fn),"");
Array<int> vertices;
GetFaceVertices(fn, vertices);
+1 -2
View File
@@ -359,7 +359,6 @@ int main (int argc, char *argv[])
}
pmesh->ExchangeFaceNbrData();
// Surface fitting.
L2_FECollection mat_coll(0, dim);
H1_FECollection surf_fit_fec(mesh_poly_deg, dim);
@@ -432,7 +431,6 @@ int main (int argc, char *argv[])
}
else { surf_fit_bg_gf0->ProjectCoefficient(*ls_coeff); }
surf_fit_bg_grad_fes =
new ParFiniteElementSpace(pmesh_surf_fit_bg, surf_fit_bg_fec, dim);
surf_fit_bg_grad = new ParGridFunction(surf_fit_bg_grad_fes);
@@ -630,6 +628,7 @@ int main (int argc, char *argv[])
}
}
}
pmesh->SetAttributes();
// 13. Setup the final NonlinearForm (which defines the integral of interest,
// its first and second derivatives). Here we can use a combination of
+1 -1
View File
@@ -35,7 +35,7 @@
// Adapted analytic shape:
// mpirun -np 4 pmesh-optimizer -m square01.mesh -o 2 -rs 2 -mid 2 -tid 4 -ni 200 -bnd -qt 1 -qo 8
// Adapted analytic size+orientation:
// mpirun -np 4 pmesh-optimizer -m square01.mesh -o 2 -rs 2 -mid 14 -tid 4 -ni 200 -bnd -qt 1 -qo 8 -fd
// mpirun -np 4 pmesh-optimizer -m square01.mesh -o 2 -rs 2 -mid 14 -tid 4 -ni 200 -bnd -qt 1 -qo 8
// Adapted analytic shape+orientation:
// mpirun -np 4 pmesh-optimizer -m square01.mesh -o 2 -rs 2 -mid 85 -tid 4 -ni 100 -bnd -qt 1 -qo 8 -fd
//
+1 -1
View File
@@ -1019,7 +1019,7 @@ struct QuarterPeach: public Surface
for (int i = 0; i < GetNBE(); i++)
{
Element *el = GetBdrElement(i);
const int fn = GetBdrElementEdgeIndex(i);
const int fn = GetBdrElementFaceIndex(i);
MFEM_VERIFY(!FaceIsTrueInterior(fn),"");
Array<int> vertices;
GetFaceVertices(fn, vertices);
+4 -2
View File
@@ -322,17 +322,19 @@ int main(int argc, char *argv[])
char vishost[] = "localhost";
int visport = 19916;
socketstream cyl_sol_sock(vishost, visport);
socketstream cyl_sol_sock;
if (visualization)
{
cyl_sol_sock.open(vishost, visport);
cyl_sol_sock << "parallel " << num_procs << " " << myid << "\n";
cyl_sol_sock.precision(8);
cyl_sol_sock << "solution\n" << cylinder_submesh << temperature_cylinder_gf <<
"pause\n" << std::flush;
}
socketstream block_sol_sock(vishost, visport);
socketstream block_sol_sock;
if (visualization)
{
block_sol_sock.open(vishost, visport);
block_sol_sock << "parallel " << num_procs << " " << myid << "\n";
block_sol_sock.precision(8);
block_sol_sock << "solution\n" << block_submesh << temperature_block_gf <<
+2 -2
View File
@@ -49,8 +49,8 @@ public:
Data(double x_, double val_) {x=x_; val=val_;};
};
inline bool operator==(const Data& d1,const Data& d2) { return (d1.x == d2.x); };
inline bool operator <(const Data& d1,const Data& d2) { return (d1.x < d2.x); };
inline bool operator==(const Data& d1,const Data& d2) { return (d1.x == d2.x); }
inline bool operator <(const Data& d1,const Data& d2) { return (d1.x < d2.x); }
/** Class for integrating the bilinear form a(u,v) := (Q Laplace u, v) where Q
can be a scalar coefficient. */
+3 -2
View File
@@ -281,12 +281,13 @@ int main(int argc, char *argv[])
#ifdef MFEM_USE_STRUMPACK
if (sp_solver)
{
STRUMPACKSolver * strumpack = new STRUMPACKSolver(argc, argv, MPI_COMM_WORLD);
STRUMPACKSolver * strumpack = new STRUMPACKSolver(MPI_COMM_WORLD, argc, argv);
strumpack->SetPrintFactorStatistics(true);
strumpack->SetPrintSolveStatistics(false);
strumpack->SetKrylovSolver(strumpack::KrylovSolver::DIRECT);
strumpack->SetReorderingStrategy(strumpack::ReorderingStrategy::METIS);
strumpack->DisableMatching();
strumpack->SetMatching(strumpack::MatchingJob::NONE);
strumpack->SetCompression(strumpack::CompressionType::NONE);
strumpack->SetOperator(*Arow);
strumpack->SetFromCommandLine();
precond = strumpack;
+1 -1
View File
@@ -111,7 +111,7 @@ int main(int argc, char *argv[])
{
// Initialize MPI and HYPRE.
Mpi::Init();
int myid = Mpi::WorldRank();;
int myid = Mpi::WorldRank();
Hypre::Init();
// Parse command-line options.
+2 -2
View File
@@ -160,7 +160,7 @@ void ShiftedFaceMarker::ListShiftedFaceDofs(const Array<int> &elem_marker,
{
if (elem_marker[tr->Elem1No] >= SBElementType::CUT)
{
pfes_sltn->GetFaceDofs(pmesh.GetBdrFace(i), dofs);
pfes_sltn->GetFaceDofs(pmesh.GetBdrElementFaceIndex(i), dofs);
sface_dof_list.Append(dofs);
}
}
@@ -343,7 +343,7 @@ void ShiftedFaceMarker::ListShiftedFaceDofs2(const Array<int> &elem_marker,
{
if (elem_marker[tr->Elem1No] >= SBElementType::CUT)
{
pfes_sltn->GetFaceDofs(pmesh.GetBdrFace(i), dofs);
pfes_sltn->GetFaceDofs(pmesh.GetBdrElementFaceIndex(i), dofs);
sface_dof_list.Append(dofs);
}
}
+18 -8
View File
@@ -57,6 +57,9 @@
// lor_solvers -m ../../data/amr-quad.mesh -fe n
// lor_solvers -m ../../data/amr-quad.mesh -fe r
// lor_solvers -m ../../data/amr-quad.mesh -fe l
// lor_solvers -m ../../data/star-surf.mesh -fe h
// lor_solvers -m ../../data/star-surf.mesh -fe n
// lor_solvers -m ../../data/star-surf.mesh -fe r
//
// Device sample runs:
// lor_solvers -fe h -d cuda
@@ -110,12 +113,15 @@ int main(int argc, char *argv[])
double kappa = (order+1)*(order+1); // Penalty used for DG discretizations
Mesh mesh(mesh_file, 1, 1);
int dim = mesh.Dimension();
MFEM_VERIFY(dim == 2 || dim == 3, "Spatial dimension must be 2 or 3.");
const int dim = mesh.Dimension();
const int sdim = mesh.SpaceDimension();
MFEM_VERIFY(dim == 2 || dim == 3, "Mesh dimension must be 2 or 3.");
MFEM_VERIFY(!L2 || dim == sdim, "DG surface meshes not supported.");
for (int l = 0; l < ref_levels; l++) { mesh.UniformRefinement(); }
FunctionCoefficient f_coeff(f(1.0)), u_coeff(u);
VectorFunctionCoefficient f_vec_coeff(dim, f_vec(RT)), u_vec_coeff(dim, u_vec);
VectorFunctionCoefficient f_vec_coeff(sdim, f_vec(RT)),
u_vec_coeff(sdim, u_vec);
int b1 = BasisType::GaussLobatto, b2 = BasisType::IntegratedGLL;
unique_ptr<FiniteElementCollection> fec;
@@ -149,8 +155,9 @@ int main(int argc, char *argv[])
a.AddInteriorFaceIntegrator(new DGDiffusionIntegrator(-1.0, kappa));
a.AddBdrFaceIntegrator(new DGDiffusionIntegrator(-1.0, kappa));
}
// TODO: L2 diffusion not implemented with partial assembly
if (!L2) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
// Partial assembly not currently supported for DG or for surface meshes with
// vector finite elements (ND or RT).
if (!L2 && (H1 || sdim == dim)) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
a.Assemble();
LinearForm b(&fes);
@@ -188,9 +195,12 @@ int main(int argc, char *argv[])
a.RecoverFEMSolution(X, b, x);
double er =
(H1 || L2) ? x.ComputeL2Error(u_coeff) : x.ComputeL2Error(u_vec_coeff);
cout << "L2 error: " << er << endl;
if (sdim == dim)
{
double er =
(H1 || L2) ? x.ComputeL2Error(u_coeff) : x.ComputeL2Error(u_vec_coeff);
cout << "L2 error: " << er << endl;
}
if (visualization)
{
+18 -9
View File
@@ -55,6 +55,9 @@
// mpirun -np 4 plor_solvers -m ../../data/fichera.mesh -fe l
// mpirun -np 4 plor_solvers -m ../../data/amr-hex.mesh -fe h -rs 0 -o 2
// mpirun -np 4 plor_solvers -m ../../data/amr-hex.mesh -fe l -rs 0 -o 2
// mpirun -np 4 plor_solvers -m ../../data/star-surf.mesh -fe h
// mpirun -np 4 plor_solvers -m ../../data/star-surf.mesh -fe n
// mpirun -np 4 plor_solvers -m ../../data/star-surf.mesh -fe r
//
// Device sample runs:
// mpirun -np 4 plor_solvers -m ../../data/fichera.mesh -fe h -d cuda
@@ -113,8 +116,10 @@ int main(int argc, char *argv[])
double kappa = (order+1)*(order+1); // Penalty used for DG discretizations
Mesh serial_mesh(mesh_file, 1, 1);
int dim = serial_mesh.Dimension();
MFEM_VERIFY(dim == 2 || dim == 3, "Spatial dimension must be 2 or 3.");
const int dim = serial_mesh.Dimension();
const int sdim = serial_mesh.SpaceDimension();
MFEM_VERIFY(dim == 2 || dim == 3, "Mesh dimension must be 2 or 3.");
MFEM_VERIFY(!L2 || dim == sdim, "DG surface meshes not supported.");
for (int l = 0; l < ser_ref_levels; l++) { serial_mesh.UniformRefinement(); }
ParMesh mesh(MPI_COMM_WORLD, serial_mesh);
for (int l = 0; l < par_ref_levels; l++) { mesh.UniformRefinement(); }
@@ -124,7 +129,8 @@ int main(int argc, char *argv[])
{ MFEM_ABORT("LOR AMS and ADS solvers are not supported with AMR meshes."); }
FunctionCoefficient f_coeff(f(1.0)), u_coeff(u);
VectorFunctionCoefficient f_vec_coeff(dim, f_vec(RT)), u_vec_coeff(dim, u_vec);
VectorFunctionCoefficient f_vec_coeff(sdim, f_vec(RT)),
u_vec_coeff(sdim, u_vec);
int b1 = BasisType::GaussLobatto, b2 = BasisType::IntegratedGLL;
unique_ptr<FiniteElementCollection> fec;
@@ -159,8 +165,9 @@ int main(int argc, char *argv[])
a.AddInteriorFaceIntegrator(new DGDiffusionIntegrator(-1.0, kappa));
a.AddBdrFaceIntegrator(new DGDiffusionIntegrator(-1.0, kappa));
}
// TODO: L2 diffusion not implemented with partial assembly
if (!L2) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
// Partial assembly not currently supported for DG or for surface meshes with
// vector finite elements (ND or RT).
if (!L2 && (H1 || sdim == dim)) { a.SetAssemblyLevel(AssemblyLevel::PARTIAL); }
a.Assemble();
ParLinearForm b(&fes);
@@ -181,7 +188,6 @@ int main(int argc, char *argv[])
OperatorHandle A;
a.FormLinearSystem(ess_dofs, x, b, A, X, B);
unique_ptr<Solver> solv_lor;
if (H1 || L2)
{
@@ -207,9 +213,12 @@ int main(int argc, char *argv[])
a.RecoverFEMSolution(X, b, x);
double er =
(H1 || L2) ? x.ComputeL2Error(u_coeff) : x.ComputeL2Error(u_vec_coeff);
if (Mpi::Root()) { cout << "L2 error: " << er << endl; }
if (sdim == dim)
{
double er =
(H1 || L2) ? x.ComputeL2Error(u_coeff) : x.ComputeL2Error(u_vec_coeff);
if (Mpi::Root()) { cout << "L2 error: " << er << endl; }
}
if (visualization)
{
+3 -3
View File
@@ -237,7 +237,7 @@ void Boundary::AddInhomogeneousDirichletBoundaryCondition(int boundary,
void Boundary::SetRobinCoefficient(double coefficient)
{
robin_coefficient = coefficient;
};
}
double IntegrateBC(const ParGridFunction &x, const Array<int> &bdr,
double alpha, double beta, double gamma, double &glb_err)
@@ -549,7 +549,7 @@ void SPDESolver::SetupRandomFieldGenerator(int seed)
new WhiteGaussianNoiseDomainLFIntegrator(fespace_ptr_->GetComm(), seed);
b_wn = new ParLinearForm(fespace_ptr_);
b_wn->AddDomainIntegrator(integ);
};
}
void SPDESolver::GenerateRandomField(ParGridFunction &x)
{
@@ -565,7 +565,7 @@ void SPDESolver::GenerateRandomField(ParGridFunction &x)
// Call back to solve to generate the random field
Solve(*b_wn, x);
};
}
double SPDESolver::ConstructNormalizationCoefficient(double nu, double l1,
double l2, double l3,
+7 -2
View File
@@ -33,8 +33,13 @@ if (MFEM_USE_MPI)
MAIN plor-transfer.cpp LIBRARIES mfem)
endif()
add_mfem_miniapp(check-tmop-metric
MAIN check-tmop-metric.cpp LIBRARIES mfem)
add_mfem_miniapp(tmop-check-metric
MAIN tmop-check-metric.cpp LIBRARIES mfem)
add_mfem_miniapp(tmop-metric-magnitude
MAIN tmop-metric-magnitude.cpp
${MFEM_MINIAPPS_COMMON_HEADERS}
LIBRARIES mfem mfem-common)
if (MFEM_USE_MPI)
add_mfem_miniapp(nodal-transfer
+1 -1
View File
@@ -206,7 +206,7 @@ int main(int argc, char *argv[])
{
cout << endl;
cout << "Element Type: " << elemTypeStr(eType) << endl;
cout << "Basis Type: " << basisTypeStr(bType) << endl;;
cout << "Basis Type: " << basisTypeStr(bType) << endl;
cout << "Basis function order: " << bOrder << endl;
cout << "Map Type: " << mapTypeStr(mType) << endl;
}
+2 -2
View File
@@ -26,7 +26,7 @@ MFEM_LIB_FILE = mfem_is_not_built
-include $(CONFIG_MK)
SEQ_MINIAPPS = display-basis load-dc convert-dc get-values lor-transfer \
check-tmop-metric tmop-metric-magnitude
tmop-check-metric tmop-metric-magnitude
PAR_MINIAPPS = nodal-transfer plor-transfer
@@ -84,7 +84,7 @@ RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
# Testing: Specific execution options
# Do not test: display-basis, load-dc, convert-dc, get-values, lor-transfer, plor-transfer
NO_TEST_APPS = display-basis load-dc convert-dc get-values lor-transfer \
plor-transfer check-tmop-metric tmop-metric-magnitude
plor-transfer tmop-check-metric tmop-metric-magnitude
$(foreach app,$(NO_TEST_APPS),$(app)-test-seq $(app)-test-par):
@true
@@ -16,9 +16,9 @@
// This miniapp checks the evaluation, 1st, and 2nd derivatives of a TMOP
// metric. Works only in serial.
//
// Compile with: make check-tmop-metric
// Compile with: make tmop-check-metric
//
// Sample runs: check-tmop-metric -mid 360
// Sample runs: tmop-check-metric -mid 360
#include "mfem.hpp"
#include <iostream>
+174 -232
View File
@@ -22,13 +22,14 @@ TEST_CASE("DoF Transformation Classes",
"[ND_TetDofTransformation]")
{
int p = 4;
int vdim = 3;
int seed = 123;
double tol = 1e-13;
SECTION("Nedelec Tetrahedral Transformations")
{
ND_TetDofTransformation T(p);
ND_TetDofTransformation Tnd(p);
Array<int> ori(4);
ori[0] = 1;
@@ -36,102 +37,191 @@ TEST_CASE("DoF Transformation Classes",
ori[2] = 5;
ori[3] = 1;
T.SetFaceOrientations(ori);
Vector u(T.Width());
Vector v(T.Width());
Vector f(T.Width());
Vector ut;
Vector vt;
Vector ft;
u.Randomize(seed);
v.Randomize(seed+1);
f.Randomize(seed+2);
SECTION("Inverse DoF transformation")
SECTION("VDim == 1")
{
Vector w;
DofTransformation T(Tnd);
T.SetFaceOrientations(ori);
ut = u; T.TransformPrimal(ut);
w = ut; T.InvTransformPrimal(w);
Vector u(T.Width());
Vector v(T.Width());
Vector f(T.Width());
Vector ut;
Vector vt;
Vector ft;
w -= u;
u.Randomize(seed);
v.Randomize(seed+1);
f.Randomize(seed+2);
REQUIRE(w.Norml2() < tol * u.Norml2());
}
SECTION("Inverse Dual DoF transformation")
{
Vector w;
ut = u; T.TransformDual(ut);
w = ut; T.InvTransformDual(w);
w -= u;
REQUIRE(w.Norml2() < tol * u.Norml2());
}
SECTION("Inner product with linear form f(v)")
{
vt = v; T.TransformPrimal(vt);
ft = f; T.TransformDual(ft);
double fv = f * v;
REQUIRE(fabs(fv - ft * vt) < tol * fabs(fv));
}
DenseMatrix A(T.Width());
{
Vector Ac;
for (int i=0; i<A.Width(); i++)
SECTION("Inverse DoF transformation")
{
A.GetColumnReference(i, Ac);
Ac.Randomize(seed+i);
Vector w;
ut = u; T.TransformPrimal(ut);
w = ut; T.InvTransformPrimal(w);
w -= u;
REQUIRE(w.Norml2() < tol * u.Norml2());
}
SECTION("Inverse Dual DoF transformation")
{
Vector w;
ut = u; T.TransformDual(ut);
w = ut; T.InvTransformDual(w);
w -= u;
REQUIRE(w.Norml2() < tol * u.Norml2());
}
SECTION("Inner product with linear form f(v)")
{
vt = v; T.TransformPrimal(vt);
ft = f; T.TransformDual(ft);
double fv = f * v;
REQUIRE(fabs(fv - ft * vt) < tol * fabs(fv));
}
DenseMatrix A(T.Width());
{
Vector Ac;
for (int i=0; i<A.Width(); i++)
{
A.GetColumnReference(i, Ac);
Ac.Randomize(seed+i);
}
}
SECTION("Inner product of two primal vectors")
{
// The matrix A in this case should be regarded as a BilinearForm.
DenseMatrix tA;
DenseMatrix At;
DenseMatrix tAt;
ut = u; T.TransformPrimal(ut);
vt = v; T.TransformPrimal(vt);
At = A; T.TransformDualRows(At);
tA = A; T.TransformDualCols(tA);
tAt = A; T.TransformDual(tAt);
double uAv = A.InnerProduct(v, u);
REQUIRE(fabs(uAv - At.InnerProduct(vt, u )) < tol * fabs(uAv));
REQUIRE(fabs(uAv - tA.InnerProduct(v, ut)) < tol * fabs(uAv));
REQUIRE(fabs(uAv - tAt.InnerProduct(vt, ut)) < tol * fabs(uAv));
}
SECTION("Inner product of a primal vector and a dual vector")
{
// The matrix A in this case should be regarded as a
// DiscreteLinearOperator.
DenseMatrix tA;
DenseMatrix At;
DenseMatrix tAt;
ft = f; T.TransformDual(ft);
vt = v; T.TransformPrimal(vt);
At = A; T.TransformDualRows(At);
tA = A; T.TransformPrimalCols(tA);
tAt = At; T.TransformPrimalCols(tAt);
double fAv = A.InnerProduct(v, f);
REQUIRE(fabs(fAv - At.InnerProduct(vt, f )) < tol * fabs(fAv));
REQUIRE(fabs(fAv - tA.InnerProduct(v, ft)) < tol * fabs(fAv));
REQUIRE(fabs(fAv - tAt.InnerProduct(vt, ft)) < tol * fabs(fAv));
}
}
SECTION("Inner product of two primal vectors")
SECTION("VDim > 1")
{
// The matrix A in this case should be regarded as a BilinearForm.
DenseMatrix tA;
DenseMatrix At;
DenseMatrix tAt;
Vector v(vdim * Tnd.Width());
Vector f(vdim * Tnd.Width());
Vector vt;
Vector ft;
ut = u; T.TransformPrimal(ut);
vt = v; T.TransformPrimal(vt);
v.Randomize(seed);
f.Randomize(seed+1);
At = A; T.TransformDualRows(At);
tA = A; T.TransformDualCols(tA);
tAt = A; T.TransformDual(tAt);
SECTION("Ordering == byNODES")
{
DofTransformation T(Tnd, vdim, Ordering::byNODES);
T.SetFaceOrientations(ori);
double uAv = A.InnerProduct(v, u);
SECTION("Inverse DoF transformation")
{
Vector w;
REQUIRE(fabs(uAv - At.InnerProduct(vt, u )) < tol * fabs(uAv));
REQUIRE(fabs(uAv - tA.InnerProduct(v, ut)) < tol * fabs(uAv));
REQUIRE(fabs(uAv - tAt.InnerProduct(vt, ut)) < tol * fabs(uAv));
}
SECTION("Inner product of a primal vector and a dual vector")
{
// The matrix A in this case should be regarded as a
// DiscreteLinearOperator.
DenseMatrix tA;
DenseMatrix At;
DenseMatrix tAt;
vt = v; T.TransformPrimal(vt);
w = vt; T.InvTransformPrimal(w);
ft = f; T.TransformDual(ft);
vt = v; T.TransformPrimal(vt);
w -= v;
At = A; T.TransformDualRows(At);
tA = A; T.TransformPrimalCols(tA);
tAt = At; T.TransformPrimalCols(tAt);
REQUIRE(w.Norml2() < tol * v.Norml2());
}
SECTION("Inverse Dual DoF transformation")
{
Vector w;
double fAv = A.InnerProduct(v, f);
vt = v; T.TransformDual(vt);
w = vt; T.InvTransformDual(w);
REQUIRE(fabs(fAv - At.InnerProduct(vt, f )) < tol * fabs(fAv));
REQUIRE(fabs(fAv - tA.InnerProduct(v, ft)) < tol * fabs(fAv));
REQUIRE(fabs(fAv - tAt.InnerProduct(vt, ft)) < tol * fabs(fAv));
w -= v;
REQUIRE(w.Norml2() < tol * v.Norml2());
}
SECTION("Inner product with linear form f(v)")
{
vt = v; T.TransformPrimal(vt);
ft = f; T.TransformDual(ft);
double fv = f * v;
REQUIRE(fabs(fv - ft * vt) < tol * fabs(fv));
}
}
SECTION("Ordering == byVDIM")
{
DofTransformation T(Tnd, vdim, Ordering::byVDIM);
T.SetFaceOrientations(ori);
SECTION("Inverse DoF transformation")
{
Vector w;
vt = v; T.TransformPrimal(vt);
w = vt; T.InvTransformPrimal(w);
w -= v;
REQUIRE(w.Norml2() < tol * v.Norml2());
}
SECTION("Inverse Dual DoF transformation")
{
Vector w;
vt = v; T.TransformDual(vt);
w = vt; T.InvTransformDual(w);
w -= v;
REQUIRE(w.Norml2() < tol * v.Norml2());
}
SECTION("Inner product with linear form f(v)")
{
vt = v; T.TransformPrimal(vt);
ft = f; T.TransformDual(ft);
double fv = f * v;
REQUIRE(fabs(fv - ft * vt) < tol * fabs(fv));
}
}
}
}
}
@@ -146,8 +236,8 @@ TEST_CASE("DoF Transformation Functions",
double tol = 1e-13;
ND_TetDofTransformation Tp(p);
ND_TetDofTransformation Tq(q);
ND_TetDofTransformation Tndp(p);
ND_TetDofTransformation Tndq(q);
Array<int> ori(4);
ori[0] = 1;
@@ -155,6 +245,7 @@ TEST_CASE("DoF Transformation Functions",
ori[2] = 5;
ori[3] = 1;
DofTransformation Tp(Tndp), Tq(Tndq);
Tp.SetFaceOrientations(ori);
Tq.SetFaceOrientations(ori);
@@ -235,153 +326,4 @@ TEST_CASE("DoF Transformation Functions",
}
}
TEST_CASE("VDoF Transformation Class",
"[DofTransformation]"
"[VDofTransformation]")
{
int p = 4;
int vdim = 3;
int seed = 123;
double tol = 1e-13;
ND_TetDofTransformation Tnd(p);
Array<int> ori(4);
ori[0] = 1;
ori[1] = 3;
ori[2] = 5;
ori[3] = 1;
Tnd.SetFaceOrientations(ori);
SECTION("VDim == 1")
{
VDofTransformation T(Tnd);
Vector v(T.Width());
Vector f(T.Width());
Vector vt;
Vector ft;
v.Randomize(seed);
f.Randomize(seed+1);
SECTION("Inverse DoF transformation")
{
Vector w;
vt = v; T.TransformPrimal(vt);
w = vt; T.InvTransformPrimal(w);
w -= v;
REQUIRE(w.Norml2() < tol * v.Norml2());
}
SECTION("Inverse Dual DoF transformation")
{
Vector w;
vt = v; T.TransformDual(vt);
w = vt; T.InvTransformDual(w);
w -= v;
REQUIRE(w.Norml2() < tol * v.Norml2());
}
SECTION("Inner product with linear form f(v)")
{
vt = v; T.TransformPrimal(vt);
ft = f; T.TransformDual(ft);
double fv = f * v;
REQUIRE(fabs(fv - ft * vt) < tol * fabs(fv));
}
}
SECTION("VDim > 1")
{
Vector v(vdim * Tnd.Width());
Vector f(vdim * Tnd.Width());
Vector vt;
Vector ft;
v.Randomize(seed);
f.Randomize(seed+1);
SECTION("Ordering == byNODES")
{
VDofTransformation T(Tnd, vdim, Ordering::byNODES);
SECTION("Inverse DoF transformation")
{
Vector w;
vt = v; T.TransformPrimal(vt);
w = vt; T.InvTransformPrimal(w);
w -= v;
REQUIRE(w.Norml2() < tol * v.Norml2());
}
SECTION("Inverse Dual DoF transformation")
{
Vector w;
vt = v; T.TransformDual(vt);
w = vt; T.InvTransformDual(w);
w -= v;
REQUIRE(w.Norml2() < tol * v.Norml2());
}
SECTION("Inner product with linear form f(v)")
{
vt = v; T.TransformPrimal(vt);
ft = f; T.TransformDual(ft);
double fv = f * v;
REQUIRE(fabs(fv - ft * vt) < tol * fabs(fv));
}
}
SECTION("Ordering == byVDIM")
{
VDofTransformation T(Tnd, vdim, Ordering::byVDIM);
SECTION("Inverse DoF transformation")
{
Vector w;
vt = v; T.TransformPrimal(vt);
w = vt; T.InvTransformPrimal(w);
w -= v;
REQUIRE(w.Norml2() < tol * v.Norml2());
}
SECTION("Inverse Dual DoF transformation")
{
Vector w;
vt = v; T.TransformDual(vt);
w = vt; T.InvTransformDual(w);
w -= v;
REQUIRE(w.Norml2() < tol * v.Norml2());
}
SECTION("Inner product with linear form f(v)")
{
vt = v; T.TransformPrimal(vt);
ft = f; T.TransformDual(ft);
double fv = f * v;
REQUIRE(fabs(fv - ft * vt) < tol * fabs(fv));
}
}
}
}
} // namespace doftrans
+1 -1
View File
@@ -244,7 +244,7 @@ TEST_CASE("Least-squares ZZ estimator on 3D NCMesh", "[NCMesh]")
{
REQUIRE(local_errors(i) < 1e-10);
}
REQUIRE(estimator.GetTotalError() < 1e-10);;
REQUIRE(estimator.GetTotalError() < 1e-10);
}
SECTION("Perfect Approximation Y")
+12 -5
View File
@@ -91,6 +91,7 @@ void TestBatchedLOR()
{
const int order = 5;
const auto mesh_fname = GENERATE(
"../../data/star-surf.mesh",
"../../data/star-q3.mesh",
"../../data/fichera-q3.mesh"
);
@@ -124,8 +125,11 @@ void TestBatchedLOR()
IntegrationRules irs(0, Quadrature1D::GaussLobatto);
const IntegrationRule &ir = irs.Get(mesh.GetElementGeometry(0), 1);
const GeometricFactors::FactorFlags dets = GeometricFactors::DETERMINANTS;
REQUIRE(lor.GetFESpace().GetMesh()->GetGeometricFactors(ir, dets)->detJ.Min()
> 0.0);
if (mesh.Dimension() == mesh.SpaceDimension())
{
REQUIRE(
lor.GetFESpace().GetMesh()->GetGeometricFactors(ir, dets)->detJ.Min() > 0.0);
}
lor.LegacyAssembleSystem(a, ess_dofs);
SparseMatrix A1 = lor.GetAssembledMatrix(); // deep copy
@@ -183,6 +187,7 @@ void ParTestBatchedLOR()
const bool all_tests = launch_all_non_regression_tests;
const int order = !all_tests ? 5 : GENERATE(1,3,5);
const auto mesh_fname = GENERATE(
"../../data/star-surf.mesh",
"../../data/star-q3.mesh",
"../../data/fichera-q3.mesh"
);
@@ -241,6 +246,7 @@ TEST_CASE("LOR AMS", "[LOR][BatchedLOR][AMS][Parallel][CUDA]")
enum SpaceType { ND, RT };
auto space_type = GENERATE(ND, RT);
auto mesh_fname = GENERATE(
"../../data/star-surf.mesh",
"../../data/star-q3.mesh",
"../../data/fichera-q3.mesh"
);
@@ -251,6 +257,7 @@ TEST_CASE("LOR AMS", "[LOR][BatchedLOR][AMS][Parallel][CUDA]")
serial_mesh.Clear();
const int dim = mesh.Dimension();
const int sdim = mesh.SpaceDimension();
// Only test RT spaces in 2D
if (space_type == RT && dim == 3) { return; }
@@ -288,18 +295,18 @@ TEST_CASE("LOR AMS", "[LOR][BatchedLOR][AMS][Parallel][CUDA]")
const double *coord = edge_fespace.GetMesh()->GetVertex(i);
x_coord(i) = coord[0];
y_coord(i) = coord[1];
if (dim == 3) { z_coord(i) = coord[2]; }
if (sdim == 3) { z_coord(i) = coord[2]; }
}
std::unique_ptr<HypreParVector> x(x_coord.ParallelProject());
std::unique_ptr<HypreParVector> y(y_coord.ParallelProject());
std::unique_ptr<HypreParVector> z;
if (dim == 3) { z.reset(z_coord.ParallelProject()); }
if (sdim == 3) { z.reset(z_coord.ParallelProject()); }
*x -= *batched_lor.GetXCoordinate();
REQUIRE(x->Normlinf() == MFEM_Approx(0.0));
*y -= *batched_lor.GetYCoordinate();
REQUIRE(y->Normlinf() == MFEM_Approx(0.0));
if (dim == 3)
if (sdim == 3)
{
*z -= *batched_lor.GetZCoordinate();
REQUIRE(z->Normlinf() == MFEM_Approx(0.0));
+39 -3
View File
@@ -26,6 +26,9 @@ using namespace mfem;
#ifdef MFEM_USE_SUPERLU
#define DIRECT_SOLVE_PARALLEL
#endif
#ifdef MFEM_USE_STRUMPACK
#define DIRECT_SOLVE_PARALLEL
#endif
#if defined(DIRECT_SOLVE_SERIAL) || defined(DIRECT_SOLVE_PARALLEL)
@@ -103,7 +106,7 @@ TEST_CASE("Serial Direct Solvers", "[CUDA]")
Mesh mesh;
if (dim == 1)
{
mesh = Mesh::MakeCartesian1D(ne, 1.0);
mesh = Mesh::MakeCartesian1D(ne, 1.0);
}
else if (dim == 2)
{
@@ -187,13 +190,13 @@ TEST_CASE("Parallel Direct Solvers", "[Parallel], [CUDA]")
{
int rank;
MPI_Comm_rank(MPI_COMM_WORLD, &rank);
const int ne = 2;
const int ne = 4;
for (int dim = 1; dim < 4; ++dim)
{
Mesh mesh;
if (dim == 1)
{
mesh = Mesh::MakeCartesian1D(ne, 1.0);
mesh = Mesh::MakeCartesian1D(ne, 1.0);
}
else if (dim == 2)
{
@@ -312,6 +315,39 @@ TEST_CASE("Parallel Direct Solvers", "[Parallel], [CUDA]")
REQUIRE(error < 1.e-12);
}
#endif
#ifdef MFEM_USE_STRUMPACK
// Transform to monolithic HypreParMatrix
{
STRUMPACKRowLocMatrix SA(*A.As<HypreParMatrix>());
STRUMPACKSolver strumpack(MPI_COMM_WORLD);
strumpack.SetPrintFactorStatistics(false);
strumpack.SetPrintSolveStatistics(false);
strumpack.SetKrylovSolver(strumpack::KrylovSolver::DIRECT);
strumpack.SetReorderingStrategy(dim > 1 ? strumpack::ReorderingStrategy::METIS :
strumpack::ReorderingStrategy::NATURAL);
strumpack.SetOperator(SA);
strumpack.Mult(B, X);
Vector Y(X.Size());
A->Mult(X, Y);
Y -= B;
REQUIRE(Y.Norml2() < 1.e-12);
strumpack.ArrayMult(BB, XX);
for (int i = 0; i < XX.Size(); i++)
{
A->Mult(*XX[i], Y);
Y -= *BB[i];
REQUIRE(Y.Norml2() < 1.e-12);
}
a.RecoverFEMSolution(X, b, x);
VectorFunctionCoefficient grad(dim, gradexact);
double error = x.ComputeH1Error(&uex, &grad);
REQUIRE(error < 1.e-12);
}
#endif
}
}
+1 -1
View File
@@ -394,7 +394,7 @@ std::array<double, 2> CheckL2Projection(ParMesh& pmesh, Mesh& smesh, int order,
}();
return {serror, perror};
};
}
TEST_CASE("EdgeFaceConstraint", "[Parallel], [NCMesh]")
{