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+6
-7
@@ -26,19 +26,18 @@ install:
|
||||
- cd ..
|
||||
|
||||
# Install hypre
|
||||
- ps: Start-FileDownload 'https://computation.llnl.gov/project/linear_solvers/download/hypre-2.10.0b.tar.gz'
|
||||
- 7z x hypre-2.10.0b.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd hypre-2.10.0b
|
||||
- cmake -Hsrc -Bbuild -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
|
||||
# - cmake -Hsrc -Bbuild -DCMAKE_BUILD_TYPE=Release -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
|
||||
- ps: Start-FileDownload 'https://github.com/hypre-space/hypre/archive/V2-10-0b.tar.gz'
|
||||
- 7z x V2-10-0b.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd hypre-2-10-0b
|
||||
- cmake -H. -Bbuild -DHYPRE_USING_FEI=OFF -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
|
||||
- cmake --build build
|
||||
- cmake --build build --target install
|
||||
- cd ..
|
||||
|
||||
# MFEM
|
||||
before_build:
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_LIBRARIES=%cd%\hypre-2.10.0b\src\hypre\lib\HYPRE.lib -DHYPRE_INCLUDE_DIRS=%cd%\hypre-2.10.0b\src\hypre\include -DHYPRE_VERSION=21000 -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_LIBRARIES=%cd%\hypre-2.10.0b\src\hypre\lib\HYPRE.lib -DHYPRE_INCLUDE_DIRS=%cd%\hypre-2.10.0b\src\hypre\include -DHYPRE_VERSION=21000 -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_LIBRARIES=%cd%\hypre-2-10-0b\hypre\lib\HYPRE.lib -DHYPRE_INCLUDE_DIRS=%cd%\hypre-2-10-0b\hypre\include -DHYPRE_VERSION=21000 -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
|
||||
|
||||
build_script:
|
||||
- cmake --build build_parallel
|
||||
|
||||
+6
-3
@@ -82,9 +82,9 @@ examples/ex20.dat
|
||||
examples/ex20p_?????.dat
|
||||
examples/gnuplot_ex20.inp
|
||||
examples/gnuplot_ex20p.inp
|
||||
examples/ex22*.mesh
|
||||
examples/ex22*.sol
|
||||
examples/ex22p_*.*
|
||||
examples/ex21*.mesh
|
||||
examples/ex21*.sol
|
||||
examples/ex21p_*.*
|
||||
|
||||
examples/sundials/ex9
|
||||
examples/sundials/ex1[06]
|
||||
@@ -183,3 +183,6 @@ miniapps/nurbs/Example1*
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
|
||||
# VPATH builds
|
||||
build-*/*
|
||||
|
||||
@@ -8,22 +8,30 @@
|
||||
http://mfem.org
|
||||
|
||||
|
||||
Version 4.0-RC2, Apr 24, 2019
|
||||
=============================
|
||||
Version 4.0.1 (development)
|
||||
===========================
|
||||
- Improved RAJA backend
|
||||
- Improved multi-GPU MPI communication.
|
||||
|
||||
Requirements and Limitations
|
||||
----------------------------
|
||||
- This is a release candidate for mfem-4.0.
|
||||
- Use at your own risk -- not everything will work and the API may change.
|
||||
- We are looking for feedback from friendly users.
|
||||
- Unlike previous MFEM releases, this version requires a C++11 compiler.
|
||||
GPU support
|
||||
-----------
|
||||
- Added initial support for AMD GPUs based on HIP: a C++ runtime API and kernel
|
||||
language that can run on both AMD and NVIDIA hardware. The list of current
|
||||
backends is: "occa-cuda", "raja-cuda", "cuda", "hip", "occa-omp", "raja-omp",
|
||||
"omp", "occa-cpu", "raja-cpu", and "cpu".
|
||||
|
||||
- GPU-related limitations:
|
||||
* Hypre preconditioners are not yet available in GPU mode.
|
||||
* Only constant coefficients are currently supported on GPUs.
|
||||
* Full-assembly (on device), element assembly, and matrix-free bilinear forms
|
||||
are not supported yet. Element batching is currently ignored.
|
||||
* Partial assembly kernels are not implemented yet for simplices.
|
||||
Miscellaneous
|
||||
-------------
|
||||
- Upgraded the SUNDIALS interface to utilize SUNDIALS version 5.0. This
|
||||
necessitated a complete rework of the interface and requires changes at
|
||||
the application level. Example usage of this new interface can be found
|
||||
in the examples/sundials directory.
|
||||
|
||||
|
||||
Version 4.0, released on May 24, 2019
|
||||
=====================================
|
||||
|
||||
Unlike previous MFEM releases, this version requires a C++11 compiler.
|
||||
|
||||
GPU support
|
||||
-----------
|
||||
@@ -34,7 +42,7 @@ GPU support
|
||||
seamlessly with a new lightweight device/host memory manager. The kernels can
|
||||
be implemented either in OCCA, or as a simple wrapper around for-loops, which
|
||||
can then be dispatched to RAJA and native backends. See the files forall.hpp
|
||||
and mem_manager.hpp in the general/ directory.
|
||||
and mem_manager.hpp in the general/ directory for more details.
|
||||
|
||||
- Several of the MFEM example codes (ex1, ex1p, ex6, and ex6p) can now take
|
||||
advantage of GPU acceleration with the backend selectable at runtime. Many of
|
||||
@@ -42,26 +50,44 @@ GPU support
|
||||
bilinear forms) have been extended to take advantage of kernel acceleration by
|
||||
simply replacing loops with the MFEM_FORALL() macro.
|
||||
|
||||
- In addition to pure CUDA, the library currently supports OCCA, RAJA and OpenMP
|
||||
kernels, which could be mixed and matched in different parts of the same
|
||||
application. We plan on adding support for more programming models and devices
|
||||
in the future, without the need for significant modifications in user code.
|
||||
The list of current backends is: "occa-cuda", "raja-cuda", "cuda", "occa-omp",
|
||||
"raja-omp", "omp", "occa-cpu", "raja-cpu", and "cpu".
|
||||
- In addition to native CUDA kernels, the library currently supports OCCA, RAJA
|
||||
and OpenMP kernels, which could be mixed and matched in different parts of the
|
||||
same application. We plan on adding support for more programming models and
|
||||
devices in the future, without the need for significant modifications in user
|
||||
code. The list of current backends is: "occa-cuda", "raja-cuda", "cuda",
|
||||
"occa-omp", "raja-omp", "omp", "occa-cpu", "raja-cpu", and "cpu".
|
||||
|
||||
- GPU-related limitations:
|
||||
* Hypre preconditioners are not yet available in GPU mode, and in particular
|
||||
hypre must be built in CPU mode.
|
||||
* Only constant coefficients are currently supported on GPUs.
|
||||
* Optimized element assembly, and matrix-free bilinear forms are not
|
||||
implemented yet. Element batching is currently ignored.
|
||||
* In device mode, full assembly is performed on the host (but the matvec
|
||||
action is performed on the device).
|
||||
* Partial assembly kernels are not implemented yet for simplices.
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
|
||||
- Partial assembled finite element operators are now available in the core
|
||||
library, based on the new classes PABilinearFormExtension, ElementRestriction,
|
||||
DofToQuad and GeometricFactors (associated with the classes BilinearForm,
|
||||
FiniteElementSpace, FiniteElement and Mesh, respectively). The kernels for
|
||||
partial assembled Setup/Assembly and Action/Mult are implemented in the
|
||||
BilinearFormIntegrator methods AssemblePA and AddMultPA.
|
||||
|
||||
- Added support for a general "low-order refined"-to-"high-order" transfer of
|
||||
GridFunction data from a "low-order refined" (LOR) space defined on a refined
|
||||
mesh to a "high-order" (HO) finite element space defined on a coarse mesh. See
|
||||
the new classes InterpolationGridTransfer and L2ProjectionGridTransfer and the
|
||||
new LOR Transfer miniapp: miniapps/tools/lor-transfer.cpp.
|
||||
|
||||
- Added support for derefinement of vector (RT + ND) spaces.
|
||||
|
||||
- Added element flux, and flux energy computation in class ElasticityIntegrator,
|
||||
allowing for the use of Zienkiewicz-Zhu type error estimators with the
|
||||
integrator. For an illustration of this addition, see the new Example 22.
|
||||
integrator. For an illustration of this addition, see the new Example 21.
|
||||
|
||||
- Added support for derefinement of vector (RT + ND) spaces.
|
||||
|
||||
- Added a variety of coefficients which are sums or products of existing
|
||||
coefficients as well as grid function coefficients which return the
|
||||
@@ -73,13 +99,13 @@ Support for wedge elements and meshes with mixed element types
|
||||
type PRISM) which have two triangular faces and three quadrilateral faces.
|
||||
Several examples of such meshes can be found in the data/ directory.
|
||||
|
||||
- Added H1 and L2 finite elements of arbitrary order for Wedge elements.
|
||||
|
||||
- Added support for mixed meshes containing triangles and quadrilaterals in 2D
|
||||
or tetrahedra, wedges, and hexahedra in 3D. This includes support for uniform
|
||||
refinement of such meshes. Several examples of such meshes can be found in the
|
||||
data/ directory.
|
||||
|
||||
- Added H1 and L2 finite elements of arbitrary order for Wedge elements.
|
||||
|
||||
- Added support for reading and writing linear and quadratic meshes containing
|
||||
wedge elements in VTK mesh format. Several examples of such meshes can be
|
||||
found in the data/ directory.
|
||||
@@ -100,6 +126,10 @@ Other meshing improvements
|
||||
This guarantees that the shape regularity of the elements will be preserved
|
||||
under refinement.
|
||||
|
||||
- The TMOP mesh optimization algorithms were extended to support user-defined
|
||||
space-dependent limiting terms. Improved the TMOP objective functions by more
|
||||
accurate normalization of the different terms.
|
||||
|
||||
- Added support for parallel communication groups on non-conforming meshes.
|
||||
|
||||
- Improved parallel partitioning of non-conforming meshes. If the coarse mesh
|
||||
@@ -113,10 +143,6 @@ Other meshing improvements
|
||||
- Added support for reading linear and quadratic 2D quadrilateral and triangular
|
||||
Cubit meshes.
|
||||
|
||||
- The TMOP mesh optimization algorithms were extended to support user-defined
|
||||
space-dependent limiting terms. Improved the TMOP objective functions by more
|
||||
accurate normalization of the different terms.
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new meshing miniapp, Toroid, which can produce a variety of torus
|
||||
@@ -132,7 +158,7 @@ New and updated examples and miniapps
|
||||
from a Hamiltonian. The example demonstrates the use of the variable order,
|
||||
symplectic integration algorithm implemented in class SIAVSolver.
|
||||
|
||||
- Added a new example, Example 22/22p, that illustrates the use of AMR to solve
|
||||
- Added a new example, Example 21/21p, that illustrates the use of AMR to solve
|
||||
a linear elasticity problem. This is an extension of Example 2/2p.
|
||||
|
||||
New and improved solvers and preconditioners
|
||||
@@ -144,21 +170,24 @@ New and improved solvers and preconditioners
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- In SparseMatrix added the option to perform MultTranspose() by matvec with
|
||||
computed and stored transpose matrix. This is required for deterministic
|
||||
results when using devices such as CUDA and OpenMP.
|
||||
|
||||
- Added unit tests based on the Catch++ library.
|
||||
- Added unit tests based on the Catch++ library in the test/ directory.
|
||||
|
||||
- Renamed the option MFEM_USE_OPENMP to MFEM_USE_LEGACY_OPENMP. This legacy
|
||||
option is deprecated and planned for removal in a future release. The original
|
||||
option name, MFEM_USE_OPENMP, is now used to enable the new OpenMP backends in
|
||||
the new kernels.
|
||||
|
||||
- In SparseMatrix added the option to perform MultTranspose() by matvec with
|
||||
computed and stored transpose matrix. This is required for deterministic
|
||||
results when using devices such as CUDA and OpenMP.
|
||||
|
||||
- Altered the way FGMRES counts its iterations so that it matches GMRES.
|
||||
|
||||
- Various other simplifications, extensions, and bugfixes in the code.
|
||||
|
||||
- Construct abstract parallel rectangular truedof-to-truedof operators via
|
||||
Operator::FormDiscreteOperator().
|
||||
|
||||
API changes
|
||||
-----------
|
||||
- In multiple places, use Geometry::Type instead of int, where appropriate.
|
||||
|
||||
+5
-6
@@ -50,7 +50,7 @@ project(mfem NONE)
|
||||
# Current version of MFEM, see also `makefile`.
|
||||
# mfem_VERSION = (string)
|
||||
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
|
||||
set(${PROJECT_NAME}_VERSION 3.4.1)
|
||||
set(${PROJECT_NAME}_VERSION 4.0.1)
|
||||
|
||||
# Prohibit in-source build
|
||||
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
|
||||
@@ -286,7 +286,6 @@ if (MFEM_USE_CUDA)
|
||||
set(CUDA_CCBIN_COMPILER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
string(APPEND CMAKE_CUDA_FLAGS " -ccbin ${CUDA_CCBIN_COMPILER}")
|
||||
set(MFEM_USE_MM YES CACHE BOOL "Enable MFEM's memory manager" FORCE)
|
||||
endif()
|
||||
|
||||
# OCCA
|
||||
@@ -396,11 +395,11 @@ endif()
|
||||
set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
|
||||
set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
|
||||
|
||||
# If building out-of-source, define MFEM_BUILD_DIR to point to the build
|
||||
# directory.
|
||||
# If building out-of-source, define MFEM_CONFIG_FILE to point to the config file
|
||||
# inside the build directory.
|
||||
if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
target_compile_definitions(mfem PRIVATE
|
||||
"MFEM_BUILD_DIR=${PROJECT_BINARY_DIR}")
|
||||
"MFEM_CONFIG_FILE=\"${PROJECT_BINARY_DIR}/config/_config.hpp\"")
|
||||
endif()
|
||||
|
||||
# Generate configuration file in the build directory: config/_config.hpp.
|
||||
@@ -416,7 +415,7 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
"Writing substitute header --> \"${Header}\"")
|
||||
file(WRITE "${PROJECT_BINARY_DIR}/${Header}"
|
||||
"// Auto-generated file.
|
||||
#define MFEM_BUILD_DIR ${PROJECT_BINARY_DIR}
|
||||
#define MFEM_CONFIG_FILE \"${PROJECT_BINARY_DIR}/config/_config.hpp\"
|
||||
#include \"${PROJECT_SOURCE_DIR}/${Header}\"
|
||||
")
|
||||
# This version will be installed in the top include directory:
|
||||
|
||||
@@ -28,13 +28,16 @@ The METIS dependency can be disabled but that is not generally recommended, see
|
||||
the option MFEM_USE_METIS.
|
||||
|
||||
MFEM also includes support for devices such as GPUs, and programming models such
|
||||
as CUDA, OCCA, OpenMP and RAJA.
|
||||
as CUDA, HIP, OCCA, OpenMP and RAJA.
|
||||
|
||||
- Starting with version 4.0, MFEM requires a C++11 compiler
|
||||
|
||||
- CUDA support requires an NVIDIA GPU and an installation of the CUDA Toolkit
|
||||
https://developer.nvidia.com/cuda-toolkit
|
||||
|
||||
- HIP support requires an AMD GPU and an installation of the ROCm software stack
|
||||
https://rocm.github.io/ROCmInstall.html#installing-from-amd-rocm-repositories
|
||||
|
||||
- OCCA support requires the OCCA library
|
||||
https://libocca.org
|
||||
|
||||
@@ -75,6 +78,10 @@ CUDA build:
|
||||
make cuda -j 4
|
||||
(build for a specific compute capability: 'make cuda -j 4 CUDA_ARCH=sm_30')
|
||||
|
||||
HIP build:
|
||||
make hip -j 4
|
||||
(build for a specific AMD GPU chip: 'make hip -j 4 HIP_ARCH=gfx900')
|
||||
|
||||
Example codes (serial/parallel, depending on the build):
|
||||
cd examples
|
||||
make -j 4
|
||||
@@ -161,14 +168,18 @@ Note that re-configuration is only needed to change the currently configured
|
||||
options. Several shortcut targets combining (re-)configuration and compilation
|
||||
are also defined:
|
||||
|
||||
make serial -> Builds serial optimized version of the library
|
||||
make parallel -> Builds parallel optimized version of the library
|
||||
make debug -> Builds serial debug version of the library
|
||||
make pdebug -> Builds parallel debug version of the library
|
||||
make cuda -> Builds serial cuda optimized version of the library
|
||||
make pcuda -> Builds parallel cuda optimized version of the library
|
||||
make cudebug -> Builds serial cuda debug version of the library
|
||||
make pcudebug -> Builds parallel cuda debug version of the library
|
||||
make serial -> Builds serial optimized version of the library
|
||||
make parallel -> Builds parallel optimized version of the library
|
||||
make debug -> Builds serial debug version of the library
|
||||
make pdebug -> Builds parallel debug version of the library
|
||||
make cuda -> Builds serial cuda optimized version of the library
|
||||
make pcuda -> Builds parallel cuda optimized version of the library
|
||||
make cudebug -> Builds serial cuda debug version of the library
|
||||
make pcudebug -> Builds parallel cuda debug version of the library
|
||||
make hip -> Builds serial hip optimized version of the library
|
||||
make phip -> Builds parallel hip optimized version of the library
|
||||
make hipdebug -> Builds serial hip debug version of the library
|
||||
make phipdebug -> Builds parallel hip debug version of the library
|
||||
|
||||
Note that any of the above shortcuts accept configuration options, either at the
|
||||
command line or through a user configuration file.
|
||||
@@ -404,18 +415,19 @@ MFEM_USE_PUMI = YES/NO
|
||||
models and effectively supports automated adaptive analysis. PUMI enables
|
||||
support for parallel unstructured mesh modifications in MFEM.
|
||||
|
||||
MFEM_USE_MM = YES/NO
|
||||
Enables support for the MFEM's memory manager (MM), which is required to
|
||||
support devices with different memory spaces. This option is required when
|
||||
CUDA support is enabled, i.e. when MFEM_USE_CUDA=YES.
|
||||
|
||||
MFEM_USE_CUDA = YES/NO
|
||||
Enables support for CUDA devices in MFEM. CUDA is a parallel computing
|
||||
platform and programming model for general computing on graphical processing
|
||||
units (GPUs). This option requires MFEM_USE_MM. The variable CUDA_ARCH is
|
||||
used to specify the CUDA compute capability used during compilation (by
|
||||
default, CUDA_ARCH=sm_60). When enabled, this option uses the CUDA_* build
|
||||
options, see below.
|
||||
units (GPUs). The variable CUDA_ARCH is used to specify the CUDA compute
|
||||
capability used during compilation (by default, CUDA_ARCH=sm_60). When
|
||||
enabled, this option uses the CUDA_* build options, see below.
|
||||
|
||||
MFEM_USE_HIP = YES/NO
|
||||
Enables support for AMD devices in MFEM. HIP is a heterogeneous-compute
|
||||
interface for portability developed by AMD that can target both AMD and
|
||||
NVIDIA GPUs. The variable HIP_ARCH is used to specify the AMD GPU processor
|
||||
used during compilation (by default, HIP_ARCH=gfx900). When enabled, this
|
||||
option uses the HIP_* build options, see below.
|
||||
|
||||
MFEM_USE_RAJA = YES/NO
|
||||
Enable support for the RAJA performance portability layer in MFEM. RAJA
|
||||
@@ -476,6 +488,7 @@ The specific libraries and their options are:
|
||||
- SUNDIALS (optional), used when MFEM_USE_SUNDIALS = YES.
|
||||
Beginning with MFEM v3.3, SUNDIALS v2.7.0 is supported.
|
||||
Beginning with MFEM v3.3.2, SUNDIALS v3.0.0 is also supported.
|
||||
Beginning with MFEM v4.1, only SUNDIALS v5.0.0+ is supported.
|
||||
If MFEM_USE_MPI is enabled, we expect that SUNDIALS is built with support for
|
||||
both MPI and hypre.
|
||||
URL: http://computation.llnl.gov/projects/sundials/sundials-software
|
||||
@@ -549,6 +562,10 @@ The specific libraries and their options are:
|
||||
URL: https://developer.nvidia.com/cuda-toolkit
|
||||
Options: CUDA_CXX, CUDA_ARCH, CUDA_OPT, CUDA_LIB.
|
||||
|
||||
- HIP, used when MFEM_USE_HIP = YES.
|
||||
URL: https://rocm.github.io/ROCmInstall.html
|
||||
Options: HIP_CXX, HIP_ARCH, HIP_OPT, HIP_LIB.
|
||||
|
||||
- OCCA, used when MFEM_USE_OCCA = YES.
|
||||
URL: https://libocca.org
|
||||
Options: OCCA_DIR, OCCA_OPT, OCCA_LIB.
|
||||
@@ -696,7 +713,6 @@ MFEM_USE_PUMI
|
||||
MFEM_USE_CUDA
|
||||
MFEM_USE_OCCA
|
||||
MFEM_USE_RAJA
|
||||
MFEM_USE_MM
|
||||
|
||||
The following options are CMake specific:
|
||||
|
||||
|
||||
@@ -41,7 +41,6 @@ set(MFEM_USE_MPFR @MFEM_USE_MPFR@)
|
||||
set(MFEM_USE_SIDRE @MFEM_USE_SIDRE@)
|
||||
set(MFEM_USE_CONDUIT @MFEM_USE_CONDUIT@)
|
||||
set(MFEM_USE_PUMI @MFEM_USE_PUMI@)
|
||||
set(MFEM_USE_MM @MFEM_USE_MM@)
|
||||
set(MFEM_USE_CUDA @MFEM_USE_CUDA@)
|
||||
set(MFEM_USE_OCCA @MFEM_USE_OCCA@)
|
||||
set(MFEM_USE_RAJA @MFEM_USE_RAJA@)
|
||||
|
||||
@@ -120,9 +120,6 @@
|
||||
// Enable MFEM functionality based on the OCCA library
|
||||
#cmakedefine MFEM_USE_OCCA
|
||||
|
||||
// Enable MFEM's internal Memory Manager (needed e.g. for MFEM_USE_CUDA)
|
||||
#cmakedefine MFEM_USE_MM
|
||||
|
||||
// Which library functions to use in class StopWatch for measuring time.
|
||||
// For a list of the available options, see INSTALL.
|
||||
// If not defined, an option is selected automatically.
|
||||
|
||||
@@ -720,8 +720,7 @@ function(mfem_export_mk_files)
|
||||
MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_MESQUITE MFEM_USE_SUITESPARSE
|
||||
MFEM_USE_SUPERLU MFEM_USE_STRUMPACK MFEM_USE_GECKO MFEM_USE_GNUTLS
|
||||
MFEM_USE_NETCDF MFEM_USE_PETSC MFEM_USE_MPFR MFEM_USE_SIDRE
|
||||
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_MM MFEM_USE_CUDA MFEM_USE_OCCA
|
||||
MFEM_USE_RAJA)
|
||||
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_CUDA MFEM_USE_OCCA MFEM_USE_RAJA)
|
||||
foreach(var ${CONFIG_MK_BOOL_VARS})
|
||||
if (${var})
|
||||
set(${var} YES)
|
||||
|
||||
+3
-11
@@ -10,18 +10,15 @@
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
|
||||
// Support out-of-source builds: if MFEM_BUILD_DIR is defined, load the config
|
||||
// file MFEM_BUILD_DIR/config/_config.hpp.
|
||||
// Support out-of-source builds: if MFEM_CONFIG_FILE is defined, include it.
|
||||
//
|
||||
// Otherwise, use the local file: _config.hpp.
|
||||
|
||||
#ifndef MFEM_CONFIG_HPP
|
||||
#define MFEM_CONFIG_HPP
|
||||
|
||||
#ifdef MFEM_BUILD_DIR
|
||||
#define MFEM_QUOTE(a) #a
|
||||
#define MFEM_MAKE_PATH(x,y) MFEM_QUOTE(x/y)
|
||||
#include MFEM_MAKE_PATH(MFEM_BUILD_DIR,config/_config.hpp)
|
||||
#ifdef MFEM_CONFIG_FILE
|
||||
#include MFEM_CONFIG_FILE
|
||||
#else
|
||||
#include "_config.hpp"
|
||||
#endif
|
||||
@@ -56,9 +53,4 @@
|
||||
#endif
|
||||
#endif // MFEM_USE_MPI not defined
|
||||
|
||||
// CUDA requires the memory manager
|
||||
#if defined(MFEM_USE_CUDA) && !defined(MFEM_USE_MM)
|
||||
#error Building with CUDA (MFEM_USE_CUDA=YES) requires MFEM_USE_MM=YES
|
||||
#endif
|
||||
|
||||
#endif // MFEM_CONFIG_HPP
|
||||
|
||||
@@ -121,19 +121,20 @@
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
// #define MFEM_USE_PUMI
|
||||
|
||||
// Build the GPU/CUDA-enabled version of the MFEM library.
|
||||
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
|
||||
// Requires a CUDA compiler (nvcc).
|
||||
// #define MFEM_USE_CUDA
|
||||
|
||||
// Build the AMD GPU/HIP-enabled version of the MFEM library.
|
||||
// Requires a HIP compiler (hipcc).
|
||||
// #define MFEM_USE_HIP
|
||||
|
||||
// Enable functionality based on the RAJA library.
|
||||
// #define MFEM_USE_RAJA
|
||||
|
||||
// Enable functionality based on the OCCA library.
|
||||
// #define MFEM_USE_OCCA
|
||||
|
||||
// Enable MFEM's internal Memory Manager (needed e.g. for MFEM_USE_CUDA)
|
||||
// #define MFEM_USE_MM
|
||||
|
||||
// Version of HYPRE used for building MFEM.
|
||||
// #define MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
|
||||
|
||||
|
||||
+1
-1
@@ -42,9 +42,9 @@ MFEM_USE_SIDRE = @MFEM_USE_SIDRE@
|
||||
MFEM_USE_CONDUIT = @MFEM_USE_CONDUIT@
|
||||
MFEM_USE_PUMI = @MFEM_USE_PUMI@
|
||||
MFEM_USE_CUDA = @MFEM_USE_CUDA@
|
||||
MFEM_USE_HIP = @MFEM_USE_HIP@
|
||||
MFEM_USE_RAJA = @MFEM_USE_RAJA@
|
||||
MFEM_USE_OCCA = @MFEM_USE_OCCA@
|
||||
MFEM_USE_MM = @MFEM_USE_MM@
|
||||
|
||||
# Compiler, compile options, and link options
|
||||
MFEM_CXX = @MFEM_CXX@
|
||||
|
||||
@@ -42,7 +42,6 @@ option(MFEM_USE_MPFR "Enable MPFR usage." OFF)
|
||||
option(MFEM_USE_SIDRE "Enable Axom/Sidre usage" OFF)
|
||||
option(MFEM_USE_CONDUIT "Enable Conduit usage" OFF)
|
||||
option(MFEM_USE_PUMI "Enable PUMI" OFF)
|
||||
option(MFEM_USE_MM "Enable MFEM's memory manager" OFF)
|
||||
option(MFEM_USE_CUDA "Enable CUDA" OFF)
|
||||
option(MFEM_USE_OCCA "Enable OCCA" OFF)
|
||||
option(MFEM_USE_RAJA "Enable RAJA" OFF)
|
||||
@@ -82,7 +81,7 @@ set(METIS_DIR "${MFEM_DIR}/../metis-4.0" CACHE PATH "Path to the METIS library."
|
||||
|
||||
set(LIBUNWIND_DIR "" CACHE PATH "Path to Libunwind.")
|
||||
|
||||
set(SUNDIALS_DIR "${MFEM_DIR}/../sundials-3.0.0" CACHE PATH
|
||||
set(SUNDIALS_DIR "${MFEM_DIR}/../sundials-5.0.0/instdir" CACHE PATH
|
||||
"Path to the SUNDIALS library.")
|
||||
# The following may be necessary, if SUNDIALS was built with KLU:
|
||||
# set(SUNDIALS_REQUIRED_PACKAGES "SuiteSparse/KLU/AMD/BTF/COLAMD/config"
|
||||
|
||||
+16
-4
@@ -46,6 +46,14 @@ CUDA_FLAGS = -x=cu --expt-extended-lambda -arch=$(CUDA_ARCH)
|
||||
CUDA_XCOMPILER = -Xcompiler=
|
||||
CUDA_XLINKER = -Xlinker=
|
||||
|
||||
# HIP configuration options
|
||||
HIP_CXX = hipcc
|
||||
# The HIP_ARCH option specifies the AMD GPU processor, similar to CUDA_ARCH. For
|
||||
# example: gfx600 (tahiti), gfx700 (kaveri), gfx701 (hawaii), gfx801 (carrizo),
|
||||
# gfx900, gfx1010, etc.
|
||||
HIP_ARCH = gfx900
|
||||
HIP_FLAGS = --amdgpu-target=$(HIP_ARCH)
|
||||
|
||||
ifneq ($(NOTMAC),)
|
||||
AR = ar
|
||||
ARFLAGS = cruv
|
||||
@@ -122,9 +130,9 @@ MFEM_USE_SIDRE = NO
|
||||
MFEM_USE_CONDUIT = NO
|
||||
MFEM_USE_PUMI = NO
|
||||
MFEM_USE_CUDA = NO
|
||||
MFEM_USE_HIP = NO
|
||||
MFEM_USE_RAJA = NO
|
||||
MFEM_USE_OCCA = NO
|
||||
MFEM_USE_MM = NO
|
||||
|
||||
# Compile and link options for zlib.
|
||||
ZLIB_DIR =
|
||||
@@ -174,9 +182,9 @@ OPENMP_LIB =
|
||||
POSIX_CLOCKS_LIB = -lrt
|
||||
|
||||
# SUNDIALS library configuration
|
||||
SUNDIALS_DIR = @MFEM_DIR@/../sundials-3.0.0
|
||||
SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
|
||||
SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
|
||||
SUNDIALS_LIB = -Wl,-rpath,$(SUNDIALS_DIR)/lib -L$(SUNDIALS_DIR)/lib\
|
||||
SUNDIALS_LIB = -Wl,-rpath,$(SUNDIALS_DIR)/lib64 -L$(SUNDIALS_DIR)/lib64\
|
||||
-lsundials_arkode -lsundials_cvode -lsundials_nvecserial -lsundials_kinsol
|
||||
|
||||
ifeq ($(MFEM_USE_MPI),YES)
|
||||
@@ -201,7 +209,7 @@ SUITESPARSE_LIB = -Wl,-rpath,$(SUITESPARSE_DIR)/lib -L$(SUITESPARSE_DIR)/lib\
|
||||
# SuperLU library configuration
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_5.1.0
|
||||
SUPERLU_OPT = -I$(SUPERLU_DIR)/SRC
|
||||
SUPERLU_LIB = -Wl,-rpath,$(SUPERLU_DIR)/SRC -L$(SUPERLU_DIR)/SRC -lsuperlu_dist
|
||||
SUPERLU_LIB = -Wl,-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib -lsuperlu_dist_5.1.0
|
||||
|
||||
# SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
|
||||
# STRUMPACK >= v2.2.0)
|
||||
@@ -304,6 +312,10 @@ PUMI_LIB = -L$(PUMI_DIR)/lib -lpumi -lcrv -lma -lmds -lapf -lpcu -lgmi -lparma\
|
||||
CUDA_OPT =
|
||||
CUDA_LIB =
|
||||
|
||||
# HIP library configuration (currently not needed)
|
||||
HIP_OPT =
|
||||
HIP_LIB =
|
||||
|
||||
# OCCA library configuration
|
||||
OCCA_DIR = @MFEM_DIR@/../occa
|
||||
OCCA_OPT = -I$(OCCA_DIR)/include
|
||||
|
||||
+2
-1
@@ -36,6 +36,7 @@ CONFIG_MK = config.mk
|
||||
all: header config-mk
|
||||
|
||||
MPI = $(MFEM_USE_MPI:NO=)
|
||||
GHV_CXX ?= $(MFEM_CXX)
|
||||
GHV = get_hypre_version
|
||||
GHV_FLAGS = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(HYPRE_OPT))
|
||||
SMX = $(if $(MFEM_USE_PUMI:NO=),MFEM_USE_SIMMETRIX)
|
||||
@@ -44,7 +45,7 @@ SMX_FILE = $(subst @MFEM_DIR@,$(if $(MFEM_DIR),$(MFEM_DIR),..),$(SMX_PATH))
|
||||
|
||||
$(GHV): $(SRC)$(GHV).cpp
|
||||
$(call mfem-info, Determining HYPRE version ...)
|
||||
$(MFEM_CXX) ${GHV_FLAGS} $(SRC)$(GHV).cpp -o $(GHV)
|
||||
$(GHV_CXX) ${GHV_FLAGS} $(SRC)$(GHV).cpp -o $(GHV)
|
||||
$(GHV).out: $(GHV)
|
||||
./$(GHV) > $(GHV).out
|
||||
.INTERMEDIATE: $(GHV) $(GHV).out
|
||||
|
||||
@@ -276,8 +276,7 @@ case "$1" in
|
||||
;;
|
||||
-dev)
|
||||
device_runs="yes"
|
||||
mfem_config+=" MFEM_USE_CUDA=YES MFEM_USE_MM=YES \
|
||||
MFEM_USE_OCCA=YES MFEM_USE_RAJA=YES MFEM_USE_OPENMP=YES"
|
||||
mfem_config+=" MFEM_USE_CUDA=YES MFEM_USE_OCCA=YES MFEM_USE_RAJA=YES MFEM_USE_OPENMP=YES"
|
||||
;;
|
||||
-v)
|
||||
valgrind="yes"
|
||||
|
||||
+2
-3
@@ -43,15 +43,14 @@
|
||||
#define MFEM_ALIGN_SIZE(size,type) \
|
||||
MFEM_ROUNDUP(size,(MFEM_SIMD_SIZE)/sizeof(type))
|
||||
|
||||
#ifdef MFEM_COUNT_FLOPS
|
||||
namespace mfem
|
||||
{
|
||||
namespace internal
|
||||
{
|
||||
long long flop_count;
|
||||
extern long long flop_count;
|
||||
}
|
||||
}
|
||||
|
||||
#ifdef MFEM_COUNT_FLOPS
|
||||
#define MFEM_FLOPS_RESET() (mfem::internal::flop_count = 0)
|
||||
#define MFEM_FLOPS_ADD(cnt) (mfem::internal::flop_count += (cnt))
|
||||
#define MFEM_FLOPS_GET() (mfem::internal::flop_count)
|
||||
|
||||
@@ -38,7 +38,7 @@ PROJECT_NAME = "MFEM"
|
||||
# could be handy for archiving the generated documentation or if some version
|
||||
# control system is used.
|
||||
|
||||
PROJECT_NUMBER = v3.4.1
|
||||
PROJECT_NUMBER = v4.0.1
|
||||
|
||||
# Using the PROJECT_BRIEF tag one can provide an optional one line description
|
||||
# for a project that appears at the top of each page and should give viewer a
|
||||
|
||||
@@ -37,7 +37,9 @@ namespace mfem {
|
||||
*
|
||||
* <H3>Main GPU classes</H3>
|
||||
* - Device
|
||||
* - Memory
|
||||
* - MemoryManager
|
||||
* - MFEM_FORALL macro in forall.hpp
|
||||
*
|
||||
* <H3>Example codes</H3>
|
||||
* - <a class="el" href="examples_2ex1_8cpp_source.html">Example 1</a>: nodal H1 FEM for the Laplace problem
|
||||
@@ -77,8 +79,8 @@ namespace mfem {
|
||||
* - <a class="el" href="ex19p_8cpp_source.html">Example 19p</a>: parallel incompressible nonlinear elasticity
|
||||
* - <a class="el" href="ex20_8cpp_source.html">Example 20</a>: symplectic ODE integration
|
||||
* - <a class="el" href="ex20p_8cpp_source.html">Example 20p</a>: parallel symplectic ODE integration
|
||||
* - <a class="el" href="ex22_8cpp_source.html">Example 22</a>: adaptive mesh refinement for linear elasticity
|
||||
* - <a class="el" href="ex22p_8cpp_source.html">Example 22p</a>: parallel adaptive mesh refinement for linear elasticity
|
||||
* - <a class="el" href="ex21_8cpp_source.html">Example 21</a>: adaptive mesh refinement for linear elasticity
|
||||
* - <a class="el" href="ex21p_8cpp_source.html">Example 21p</a>: parallel adaptive mesh refinement for linear elasticity
|
||||
*
|
||||
* <H4>SUNDIALS Examples</H4>
|
||||
* - Variants of Examples
|
||||
|
||||
Binary file not shown.
|
After Width: | Height: | Size: 134 KiB |
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|
After Width: | Height: | Size: 66 KiB |
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|
After Width: | Height: | Size: 73 KiB |
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|
After Width: | Height: | Size: 128 KiB |
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|
After Width: | Height: | Size: 66 KiB |
@@ -27,7 +27,7 @@ list(APPEND ALL_EXE_SRCS
|
||||
ex18.cpp
|
||||
ex19.cpp
|
||||
ex20.cpp
|
||||
ex22.cpp
|
||||
ex21.cpp
|
||||
)
|
||||
|
||||
if (MFEM_USE_MPI)
|
||||
@@ -52,7 +52,7 @@ if (MFEM_USE_MPI)
|
||||
ex18p.cpp
|
||||
ex19p.cpp
|
||||
ex20p.cpp
|
||||
ex22p.cpp
|
||||
ex21p.cpp
|
||||
)
|
||||
endif()
|
||||
|
||||
|
||||
+245
-164
File diff suppressed because one or more lines are too long
+15
-19
@@ -62,7 +62,7 @@ int main(int argc, char *argv[])
|
||||
int order = 1;
|
||||
bool static_cond = false;
|
||||
bool pa = false;
|
||||
const char *device = "cpu";
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
@@ -75,7 +75,7 @@ int main(int argc, char *argv[])
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device, "-d", "--device",
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
@@ -88,13 +88,18 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// 2. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 3. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
|
||||
// the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 3. Refine the mesh to increase the resolution. In this example we do
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
|
||||
// largest number that gives a final mesh with no more than 50,000
|
||||
// elements.
|
||||
@@ -107,7 +112,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 4. Define a finite element space on the mesh. Here we use continuous
|
||||
// 5. Define a finite element space on the mesh. Here we use continuous
|
||||
// Lagrange finite elements of the specified order. If order < 1, we
|
||||
// instead use an isoparametric/isogeometric space.
|
||||
FiniteElementCollection *fec;
|
||||
@@ -128,7 +133,7 @@ int main(int argc, char *argv[])
|
||||
cout << "Number of finite element unknowns: "
|
||||
<< fespace->GetTrueVSize() << endl;
|
||||
|
||||
// 5. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
// 6. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
// In this example, the boundary conditions are defined by marking all
|
||||
// the boundary attributes from the mesh as essential (Dirichlet) and
|
||||
// converting them to a list of true dofs.
|
||||
@@ -140,7 +145,7 @@ int main(int argc, char *argv[])
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 6. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// 7. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// the FEM linear system, which in this case is (1,phi_i) where phi_i are
|
||||
// the basis functions in the finite element fespace.
|
||||
LinearForm *b = new LinearForm(fespace);
|
||||
@@ -148,12 +153,6 @@ int main(int argc, char *argv[])
|
||||
b->AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b->Assemble();
|
||||
|
||||
// 7. Set device config parameters from the command line options and switch
|
||||
// to working on the device.
|
||||
Device::Configure(device);
|
||||
Device::Print();
|
||||
Device::Enable();
|
||||
|
||||
// 8. Define the solution vector x as a finite element grid function
|
||||
// corresponding to fespace. Initialize x with initial guess of zero,
|
||||
// which satisfies the boundary conditions.
|
||||
@@ -203,10 +202,7 @@ int main(int argc, char *argv[])
|
||||
// 12. Recover the solution as a finite element grid function.
|
||||
a->RecoverFEMSolution(X, *b, x);
|
||||
|
||||
// 13. Switch back to the host.
|
||||
Device::Disable();
|
||||
|
||||
// 14. Save the refined mesh and the solution. This output can be viewed later
|
||||
// 13. Save the refined mesh and the solution. This output can be viewed later
|
||||
// using GLVis: "glvis -m refined.mesh -g sol.gf".
|
||||
ofstream mesh_ofs("refined.mesh");
|
||||
mesh_ofs.precision(8);
|
||||
@@ -215,7 +211,7 @@ int main(int argc, char *argv[])
|
||||
sol_ofs.precision(8);
|
||||
x.Save(sol_ofs);
|
||||
|
||||
// 15. Send the solution by socket to a GLVis server.
|
||||
// 14. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
@@ -225,7 +221,7 @@ int main(int argc, char *argv[])
|
||||
sol_sock << "solution\n" << *mesh << x << flush;
|
||||
}
|
||||
|
||||
// 16. Free the used memory.
|
||||
// 15. Free the used memory.
|
||||
delete a;
|
||||
delete b;
|
||||
delete fespace;
|
||||
|
||||
+1
-1
@@ -144,7 +144,7 @@ void InitialDeformation(const Vector &x, Vector &y);
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command-line options
|
||||
const char *mesh_file = "../data/beam-hex.mesh";
|
||||
const char *mesh_file = "../data/beam-tet.mesh";
|
||||
int ref_levels = 0;
|
||||
int order = 2;
|
||||
bool visualization = true;
|
||||
|
||||
+1
-1
@@ -150,7 +150,7 @@ int main(int argc, char *argv[])
|
||||
MPI_Comm_rank(MPI_COMM_WORLD, &myid);
|
||||
|
||||
// 2. Parse command-line options
|
||||
const char *mesh_file = "../data/beam-hex.mesh";
|
||||
const char *mesh_file = "../data/beam-tet.mesh";
|
||||
int ser_ref_levels = 0;
|
||||
int par_ref_levels = 0;
|
||||
int order = 2;
|
||||
|
||||
+16
-20
@@ -65,7 +65,7 @@ int main(int argc, char *argv[])
|
||||
int order = 1;
|
||||
bool static_cond = false;
|
||||
bool pa = false;
|
||||
const char *device = "cpu";
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
@@ -78,7 +78,7 @@ int main(int argc, char *argv[])
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device, "-d", "--device",
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
@@ -98,13 +98,18 @@ int main(int argc, char *argv[])
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
// 3. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// 3. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
if (myid == 0) { device.Print(); }
|
||||
|
||||
// 4. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
|
||||
// and volume meshes with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 4. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// 5. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// this example we do 'ref_levels' of uniform refinement. We choose
|
||||
// 'ref_levels' to be the largest number that gives a final mesh with no
|
||||
// more than 10,000 elements.
|
||||
@@ -117,7 +122,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
@@ -130,7 +135,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 6. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// 7. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use continuous Lagrange finite elements of the specified order. If
|
||||
// order < 1, we instead use an isoparametric/isogeometric space.
|
||||
FiniteElementCollection *fec;
|
||||
@@ -157,7 +162,7 @@ int main(int argc, char *argv[])
|
||||
cout << "Number of finite element unknowns: " << size << endl;
|
||||
}
|
||||
|
||||
// 7. Determine the list of true (i.e. parallel conforming) essential
|
||||
// 8. Determine the list of true (i.e. parallel conforming) essential
|
||||
// boundary dofs. In this example, the boundary conditions are defined
|
||||
// by marking all the boundary attributes from the mesh as essential
|
||||
// (Dirichlet) and converting them to a list of true dofs.
|
||||
@@ -169,7 +174,7 @@ int main(int argc, char *argv[])
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 8. Set up the parallel linear form b(.) which corresponds to the
|
||||
// 9. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system, which in this case is
|
||||
// (1,phi_i) where phi_i are the basis functions in fespace.
|
||||
ParLinearForm *b = new ParLinearForm(fespace);
|
||||
@@ -177,12 +182,6 @@ int main(int argc, char *argv[])
|
||||
b->AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b->Assemble();
|
||||
|
||||
// 9. Set device config parameters from the command line options and switch
|
||||
// to working on the device.
|
||||
Device::Configure(device);
|
||||
if (myid == 0) { Device::Print(); }
|
||||
Device::Enable();
|
||||
|
||||
// 10. Define the solution vector x as a parallel finite element grid function
|
||||
// corresponding to fespace. Initialize x with initial guess of zero,
|
||||
// which satisfies the boundary conditions.
|
||||
@@ -225,10 +224,7 @@ int main(int argc, char *argv[])
|
||||
// local finite element solution on each processor.
|
||||
a->RecoverFEMSolution(X, *b, x);
|
||||
|
||||
// 15. Switch back to the host.
|
||||
Device::Disable();
|
||||
|
||||
// 16. Save the refined mesh and the solution in parallel. This output can
|
||||
// 15. Save the refined mesh and the solution in parallel. This output can
|
||||
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
|
||||
{
|
||||
ostringstream mesh_name, sol_name;
|
||||
@@ -244,7 +240,7 @@ int main(int argc, char *argv[])
|
||||
x.Save(sol_ofs);
|
||||
}
|
||||
|
||||
// 17. Send the solution by socket to a GLVis server.
|
||||
// 16. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
@@ -255,7 +251,7 @@ int main(int argc, char *argv[])
|
||||
sol_sock << "solution\n" << *pmesh << x << flush;
|
||||
}
|
||||
|
||||
// 18. Free the used memory.
|
||||
// 17. Free the used memory.
|
||||
delete a;
|
||||
delete b;
|
||||
delete fespace;
|
||||
|
||||
@@ -1,16 +1,16 @@
|
||||
// MFEM Example 22
|
||||
// MFEM Example 21
|
||||
//
|
||||
// Compile with: make ex22
|
||||
// Compile with: make ex21
|
||||
//
|
||||
// Sample runs: ex22
|
||||
// ex22 -o 3
|
||||
// ex22 -m ../data/beam-quad.mesh
|
||||
// ex22 -m ../data/beam-quad.mesh -o 3
|
||||
// ex22 -m ../data/beam-quad.mesh -o 3 -f 1
|
||||
// ex22 -m ../data/beam-tet.mesh
|
||||
// ex22 -m ../data/beam-tet.mesh -o 2
|
||||
// ex22 -m ../data/beam-hex.mesh
|
||||
// ex22 -m ../data/beam-hex.mesh -o 2
|
||||
// Sample runs: ex21
|
||||
// ex21 -o 3
|
||||
// ex21 -m ../data/beam-quad.mesh
|
||||
// ex21 -m ../data/beam-quad.mesh -o 3
|
||||
// ex21 -m ../data/beam-quad.mesh -o 3 -f 1
|
||||
// ex21 -m ../data/beam-tet.mesh
|
||||
// ex21 -m ../data/beam-tet.mesh -o 2
|
||||
// ex21 -m ../data/beam-hex.mesh
|
||||
// ex21 -m ../data/beam-hex.mesh -o 2
|
||||
//
|
||||
// Description: This is a version of Example 2 with a simple adaptive mesh
|
||||
// refinement loop. The problem being solved is again the linear
|
||||
@@ -287,11 +287,11 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
|
||||
{
|
||||
ofstream mesh_ref_out("ex22_reference.mesh");
|
||||
ofstream mesh_ref_out("ex21_reference.mesh");
|
||||
mesh_ref_out.precision(16);
|
||||
mesh.Print(mesh_ref_out);
|
||||
|
||||
ofstream mesh_out("ex22_deformed.mesh");
|
||||
ofstream mesh_out("ex21_deformed.mesh");
|
||||
mesh_out.precision(16);
|
||||
GridFunction nodes(&fespace), *nodes_p = &nodes;
|
||||
mesh.GetNodes(nodes);
|
||||
@@ -301,7 +301,7 @@ int main(int argc, char *argv[])
|
||||
mesh.Print(mesh_out);
|
||||
mesh.SwapNodes(nodes_p, own_nodes);
|
||||
|
||||
ofstream x_out("ex22_displacement.sol");
|
||||
ofstream x_out("ex21_displacement.sol");
|
||||
x_out.precision(16);
|
||||
x.Save(x_out);
|
||||
}
|
||||
@@ -1,15 +1,15 @@
|
||||
// MFEM Example 22
|
||||
// MFEM Example 21
|
||||
//
|
||||
// Compile with: make ex22p
|
||||
// Compile with: make ex21p
|
||||
//
|
||||
// Sample runs: mpirun -np 4 ex22p
|
||||
// mpirun -np 4 ex22p -o 3
|
||||
// mpirun -np 4 ex22p -m ../data/beam-quad.mesh
|
||||
// mpirun -np 4 ex22p -m ../data/beam-quad.mesh -o 3
|
||||
// mpirun -np 4 ex22p -m ../data/beam-tet.mesh
|
||||
// mpirun -np 4 ex22p -m ../data/beam-tet.mesh -o 2
|
||||
// mpirun -np 4 ex22p -m ../data/beam-hex.mesh
|
||||
// mpirun -np 4 ex22p -m ../data/beam-hex.mesh -o 2
|
||||
// Sample runs: mpirun -np 4 ex21p
|
||||
// mpirun -np 4 ex21p -o 3
|
||||
// mpirun -np 4 ex21p -m ../data/beam-quad.mesh
|
||||
// mpirun -np 4 ex21p -m ../data/beam-quad.mesh -o 3
|
||||
// mpirun -np 4 ex21p -m ../data/beam-tet.mesh
|
||||
// mpirun -np 4 ex21p -m ../data/beam-tet.mesh -o 2
|
||||
// mpirun -np 4 ex21p -m ../data/beam-hex.mesh
|
||||
// mpirun -np 4 ex21p -m ../data/beam-hex.mesh -o 2
|
||||
//
|
||||
// Description: This is a version of Example 2p with a simple adaptive mesh
|
||||
// refinement loop. The problem being solved is again the linear
|
||||
@@ -330,7 +330,7 @@ int main(int argc, char *argv[])
|
||||
x.Update();
|
||||
}
|
||||
|
||||
// 22. Inform also the bilinear and linear forms that the space has
|
||||
// 21. Inform also the bilinear and linear forms that the space has
|
||||
// changed.
|
||||
a.Update();
|
||||
b.Update();
|
||||
@@ -338,9 +338,9 @@ int main(int argc, char *argv[])
|
||||
|
||||
{
|
||||
ostringstream mref_name, mesh_name, sol_name;
|
||||
mref_name << "ex22p_reference_mesh." << setfill('0') << setw(6) << myid;
|
||||
mesh_name << "ex22p_deformed_mesh." << setfill('0') << setw(6) << myid;
|
||||
sol_name << "ex22p_displacement." << setfill('0') << setw(6) << myid;
|
||||
mref_name << "ex21p_reference_mesh." << setfill('0') << setw(6) << myid;
|
||||
mesh_name << "ex21p_deformed_mesh." << setfill('0') << setw(6) << myid;
|
||||
sol_name << "ex21p_displacement." << setfill('0') << setw(6) << myid;
|
||||
|
||||
ofstream mesh_ref_out(mref_name.str().c_str());
|
||||
mesh_ref_out.precision(16);
|
||||
+11
-12
@@ -49,7 +49,7 @@ int main(int argc, char *argv[])
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
bool pa = false;
|
||||
const char *device = "cpu";
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
@@ -59,7 +59,7 @@ int main(int argc, char *argv[])
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device, "-d", "--device",
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
@@ -72,14 +72,19 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// 2. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// 2. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
device.Print();
|
||||
|
||||
// 3. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
|
||||
// the same code.
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
int sdim = mesh.SpaceDimension();
|
||||
|
||||
// 3. Since a NURBS mesh can currently only be refined uniformly, we need to
|
||||
// 4. Since a NURBS mesh can currently only be refined uniformly, we need to
|
||||
// convert it to a piecewise-polynomial curved mesh. First we refine the
|
||||
// NURBS mesh a bit more and then project the curvature to quadratic Nodes.
|
||||
if (mesh.NURBSext)
|
||||
@@ -91,15 +96,11 @@ int main(int argc, char *argv[])
|
||||
mesh.SetCurvature(2);
|
||||
}
|
||||
|
||||
// 4. Define a finite element space on the mesh. The polynomial order is
|
||||
// 5. Define a finite element space on the mesh. The polynomial order is
|
||||
// one (linear) by default, but this can be changed on the command line.
|
||||
H1_FECollection fec(order, dim);
|
||||
FiniteElementSpace fespace(&mesh, &fec);
|
||||
|
||||
// 5. Set device config parameters from the command line options.
|
||||
Device::Configure(device);
|
||||
Device::Print();
|
||||
|
||||
// 6. As in Example 1, we set up bilinear and linear forms corresponding to
|
||||
// the Laplace problem -\Delta u = 1. We don't assemble the discrete
|
||||
// problem yet, this will be done in the main loop.
|
||||
@@ -168,8 +169,7 @@ int main(int argc, char *argv[])
|
||||
x.ProjectBdrCoefficient(zero, ess_bdr);
|
||||
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
|
||||
// 15. Switch to the device and assemble the stiffness matrix.
|
||||
Device::Enable();
|
||||
// 15. Assemble the stiffness matrix.
|
||||
a.Assemble();
|
||||
|
||||
// 16. Create the linear system: eliminate boundary conditions, constrain
|
||||
@@ -204,7 +204,6 @@ int main(int argc, char *argv[])
|
||||
// 18. After solving the linear system, reconstruct the solution as a
|
||||
// finite element GridFunction. Constrained nodes are interpolated
|
||||
// from true DOFs (it may therefore happen that x.Size() >= X.Size()).
|
||||
Device::Disable();
|
||||
a.RecoverFEMSolution(X, b, x);
|
||||
|
||||
// 19. Send solution by socket to the GLVis server.
|
||||
|
||||
+15
-16
@@ -55,7 +55,7 @@ int main(int argc, char *argv[])
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
bool pa = false;
|
||||
const char *device = "cpu";
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = true;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
@@ -65,7 +65,7 @@ int main(int argc, char *argv[])
|
||||
"Finite element order (polynomial degree).");
|
||||
args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
|
||||
"--no-partial-assembly", "Enable Partial Assembly.");
|
||||
args.AddOption(&device, "-d", "--device",
|
||||
args.AddOption(&device_config, "-d", "--device",
|
||||
"Device configuration string, see Device::Configure().");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
@@ -85,14 +85,19 @@ int main(int argc, char *argv[])
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
// 3. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// 3. Enable hardware devices such as GPUs, and programming models such as
|
||||
// CUDA, OCCA, RAJA and OpenMP based on command line options.
|
||||
Device device(device_config);
|
||||
if (myid == 0) { device.Print(); }
|
||||
|
||||
// 4. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
|
||||
// and volume meshes with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
int sdim = mesh->SpaceDimension();
|
||||
|
||||
// 4. Refine the serial mesh on all processors to increase the resolution.
|
||||
// 5. Refine the serial mesh on all processors to increase the resolution.
|
||||
// Also project a NURBS mesh to a piecewise-quadratic curved mesh. Make
|
||||
// sure that the mesh is non-conforming.
|
||||
if (mesh->NURBSext)
|
||||
@@ -102,7 +107,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
mesh->EnsureNCMesh();
|
||||
|
||||
// 5. Define a parallel mesh by partitioning the serial mesh.
|
||||
// 6. Define a parallel mesh by partitioning the serial mesh.
|
||||
// Once the parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh pmesh(MPI_COMM_WORLD, *mesh);
|
||||
delete mesh;
|
||||
@@ -112,15 +117,11 @@ int main(int argc, char *argv[])
|
||||
Array<int> ess_bdr(pmesh.bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
|
||||
// 6. Define a finite element space on the mesh. The polynomial order is
|
||||
// 7. Define a finite element space on the mesh. The polynomial order is
|
||||
// one (linear) by default, but this can be changed on the command line.
|
||||
H1_FECollection fec(order, dim);
|
||||
ParFiniteElementSpace fespace(&pmesh, &fec);
|
||||
|
||||
// 7. Set device config parameters from the command line options.
|
||||
Device::Configure(device);
|
||||
if (myid == 0) { Device::Print(); }
|
||||
|
||||
// 8. As in Example 1p, we set up bilinear and linear forms corresponding to
|
||||
// the Laplace problem -\Delta u = 1. We don't assemble the discrete
|
||||
// problem yet, this will be done in the main loop.
|
||||
@@ -200,11 +201,10 @@ int main(int argc, char *argv[])
|
||||
fespace.GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
b.Assemble();
|
||||
|
||||
// 15. Switch to the device and assemble the stiffness matrix. Note that
|
||||
// MFEM doesn't care at this point that the mesh is nonconforming and
|
||||
// parallel. The FE space is considered 'cut' along hanging
|
||||
// edges/faces, and also across processor boundaries.
|
||||
Device::Enable();
|
||||
// 15. Assemble the stiffness matrix. Note that MFEM doesn't care at this
|
||||
// point that the mesh is nonconforming and parallel. The FE space is
|
||||
// considered 'cut' along hanging edges/faces, and also across
|
||||
// processor boundaries.
|
||||
a.Assemble();
|
||||
|
||||
// 16. Create the parallel linear system: eliminate boundary conditions.
|
||||
@@ -232,7 +232,6 @@ int main(int argc, char *argv[])
|
||||
// 18. Switch back to the host and extract the parallel grid function
|
||||
// corresponding to the finite element approximation X. This is the
|
||||
// local solution on each processor.
|
||||
Device::Disable();
|
||||
a.RecoverFEMSolution(X, b, x);
|
||||
|
||||
// 19. Send the solution by socket to a GLVis server.
|
||||
|
||||
+7
-3
@@ -22,9 +22,9 @@ MFEM_LIB_FILE = mfem_is_not_built
|
||||
-include $(CONFIG_MK)
|
||||
|
||||
SEQ_EXAMPLES = ex1 ex2 ex3 ex4 ex5 ex6 ex7 ex8 ex9 ex10 ex14 ex15 ex16 ex17\
|
||||
ex18 ex19 ex20 ex22
|
||||
ex18 ex19 ex20 ex21 drl4amr
|
||||
PAR_EXAMPLES = ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex8p ex9p ex10p ex11p ex12p\
|
||||
ex13p ex14p ex15p ex16p ex17p ex18p ex19p ex20p ex22p
|
||||
ex13p ex14p ex15p ex16p ex17p ex18p ex19p ex20p ex21p
|
||||
|
||||
ifeq ($(MFEM_USE_MPI),NO)
|
||||
EXAMPLES = $(SEQ_EXAMPLES)
|
||||
@@ -71,6 +71,10 @@ ifeq ($(MFEM_USE_MPI),YES)
|
||||
ex18p: $(SRC)ex18.hpp
|
||||
endif
|
||||
|
||||
drl4amr:
|
||||
python drl4amr.py build
|
||||
g++ -pthread -shared -Wl,-z,relro build/temp.linux-x86_64-2.7/drl4amr.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/drl4amr.so -L.. -lmfem
|
||||
|
||||
MFEM_TESTS = EXAMPLES
|
||||
include $(MFEM_TEST_MK)
|
||||
test: $(SUBDIRS_TEST)
|
||||
@@ -125,4 +129,4 @@ clean-exec:
|
||||
@rm -f vortex-mesh.* vortex.mesh vortex-?-init.* vortex-?-final.*
|
||||
@rm -f deformation.* pressure.*
|
||||
@rm -f ex20.dat ex20p_?????.dat gnuplot_ex20.inp gnuplot_ex20p.inp
|
||||
@rm -f ex22*.mesh ex22*.sol ex22p_*.*
|
||||
@rm -f ex21*.mesh ex21*.sol ex21p_*.*
|
||||
|
||||
@@ -27,8 +27,11 @@
|
||||
// method HyperelasticOperator::ImplicitSolve is the only
|
||||
// requirement for high-order implicit (SDIRK) time integration.
|
||||
// If using PETSc to solve the nonlinear problem, use the option
|
||||
// file provided (rc_ex10p) that customizes the
|
||||
// Newton-Krylov method.
|
||||
// files provided (see rc_ex10p, rc_ex10p_mf, rc_ex10p_mfop) that
|
||||
// customize the Newton-Krylov method.
|
||||
// When option --jfnk is used, PETSc will use a Jacobian-free
|
||||
// Newton-Krylov method, using a user-defined preconditioner
|
||||
// constructed with the PetscPreconditionerFactory class.
|
||||
//
|
||||
// We recommend viewing examples 2 and 9 before viewing this
|
||||
// example.
|
||||
@@ -86,12 +89,15 @@ protected:
|
||||
Solver *J_solver;
|
||||
/// Preconditioner for the Jacobian solve in the Newton method
|
||||
Solver *J_prec;
|
||||
/// Preconditioner factory for JFNK
|
||||
PetscPreconditionerFactory *J_factory;
|
||||
|
||||
mutable Vector z; // auxiliary vector
|
||||
|
||||
public:
|
||||
HyperelasticOperator(ParFiniteElementSpace &f, Array<int> &ess_bdr,
|
||||
double visc, double mu, double K, bool use_petsc);
|
||||
double visc, double mu, double K,
|
||||
bool use_petsc, bool petsc_use_jfnk);
|
||||
|
||||
/// Compute the right-hand side of the ODE system.
|
||||
virtual void Mult(const Vector &vx, Vector &dvx_dt) const;
|
||||
@@ -136,8 +142,21 @@ public:
|
||||
virtual Operator &GetGradient(const Vector &k) const;
|
||||
|
||||
virtual ~ReducedSystemOperator();
|
||||
|
||||
};
|
||||
|
||||
/** Auxiliary class to provide preconditioners for matrix-free methods */
|
||||
class PreconditionerFactory : public PetscPreconditionerFactory
|
||||
{
|
||||
private:
|
||||
// const ReducedSystemOperator& op; // unused for now (generates warning)
|
||||
|
||||
public:
|
||||
PreconditionerFactory(const ReducedSystemOperator& op_, const string& name_)
|
||||
: PetscPreconditionerFactory(name_) /* , op(op_) */ {}
|
||||
virtual mfem::Solver* NewPreconditioner(const mfem::OperatorHandle&);
|
||||
virtual ~PreconditionerFactory() {}
|
||||
};
|
||||
|
||||
/** Function representing the elastic energy density for the given hyperelastic
|
||||
model+deformation. Used in HyperelasticOperator::GetElasticEnergyDensity. */
|
||||
@@ -187,6 +206,7 @@ int main(int argc, char *argv[])
|
||||
int vis_steps = 1;
|
||||
bool use_petsc = true;
|
||||
const char *petscrc_file = "";
|
||||
bool petsc_use_jfnk = false;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -221,6 +241,9 @@ int main(int argc, char *argv[])
|
||||
"Use or not PETSc to solve the nonlinear system.");
|
||||
args.AddOption(&petscrc_file, "-petscopts", "--petscopts",
|
||||
"PetscOptions file to use.");
|
||||
args.AddOption(&petsc_use_jfnk, "-jfnk", "--jfnk", "-no-jfnk",
|
||||
"--no-jfnk",
|
||||
"Use JFNK with user-defined preconditioner factory.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
@@ -344,7 +367,8 @@ int main(int argc, char *argv[])
|
||||
// 9. Initialize the hyperelastic operator, the GLVis visualization and print
|
||||
// the initial energies.
|
||||
HyperelasticOperator *oper = new HyperelasticOperator(fespace, ess_bdr, visc,
|
||||
mu, K, use_petsc);
|
||||
mu, K, use_petsc,
|
||||
petsc_use_jfnk);
|
||||
|
||||
socketstream vis_v, vis_w;
|
||||
if (visualization)
|
||||
@@ -520,7 +544,7 @@ Operator &ReducedSystemOperator::GetGradient(const Vector &k) const
|
||||
add(*v, dt, k, w);
|
||||
add(*x, dt, w, z);
|
||||
localJ->Add(dt*dt, H->GetLocalGradient(z));
|
||||
// if we are using PETSc, the HypreParCSR jacobian will be converted to
|
||||
// if we are using PETSc, the HypreParCSR Jacobian will be converted to
|
||||
// PETSc's AIJ on the fly
|
||||
Jacobian = M->ParallelAssemble(localJ);
|
||||
delete localJ;
|
||||
@@ -537,7 +561,8 @@ ReducedSystemOperator::~ReducedSystemOperator()
|
||||
|
||||
HyperelasticOperator::HyperelasticOperator(ParFiniteElementSpace &f,
|
||||
Array<int> &ess_bdr, double visc,
|
||||
double mu, double K, bool use_petsc)
|
||||
double mu, double K, bool use_petsc,
|
||||
bool use_petsc_factory)
|
||||
: TimeDependentOperator(2*f.TrueVSize(), 0.0), fespace(f),
|
||||
M(&fespace), S(&fespace), H(&fespace),
|
||||
viscosity(visc), M_solver(f.GetComm()),
|
||||
@@ -590,6 +615,8 @@ HyperelasticOperator::HyperelasticOperator(ParFiniteElementSpace &f,
|
||||
J_minres->SetPreconditioner(*J_prec);
|
||||
J_solver = J_minres;
|
||||
|
||||
J_factory = NULL;
|
||||
|
||||
newton_solver.iterative_mode = false;
|
||||
newton_solver.SetSolver(*J_solver);
|
||||
newton_solver.SetOperator(*reduced_oper);
|
||||
@@ -600,12 +627,20 @@ HyperelasticOperator::HyperelasticOperator(ParFiniteElementSpace &f,
|
||||
}
|
||||
else
|
||||
{
|
||||
// if using PETSc, we create the same solver (NEWTON+MINRES+Jacobi)
|
||||
// if using PETSc, we create the same solver (Newton + MINRES + Jacobi)
|
||||
// by command line options (see rc_ex10p)
|
||||
J_solver = NULL;
|
||||
J_prec = NULL;
|
||||
J_factory = NULL;
|
||||
pnewton_solver = new PetscNonlinearSolver(f.GetComm(),
|
||||
*reduced_oper);
|
||||
|
||||
// we can setup a factory to construct a "physics-based" preconditioner
|
||||
if (use_petsc_factory)
|
||||
{
|
||||
J_factory = new PreconditionerFactory(*reduced_oper, "JFNK preconditioner");
|
||||
pnewton_solver->SetPreconditionerFactory(J_factory);
|
||||
}
|
||||
pnewton_solver->SetPrintLevel(1); // print Newton iterations
|
||||
pnewton_solver->SetRelTol(rel_tol);
|
||||
pnewton_solver->SetAbsTol(0.0);
|
||||
@@ -691,12 +726,26 @@ HyperelasticOperator::~HyperelasticOperator()
|
||||
{
|
||||
delete J_solver;
|
||||
delete J_prec;
|
||||
delete J_factory;
|
||||
delete reduced_oper;
|
||||
delete model;
|
||||
delete Mmat;
|
||||
delete pnewton_solver;
|
||||
}
|
||||
|
||||
// This method gets called every time we need a preconditioner "oh"
|
||||
// contains the PetscParMatrix that wraps the operator constructed in
|
||||
// the GetGradient() method (see also PetscSolver::SetJacobianType()).
|
||||
// In this example, we just return a customizable PetscPreconditioner
|
||||
// using that matrix. However, the OperatorHandle argument can be
|
||||
// ignored, and any "physics-based" solver can be constructed since we
|
||||
// have access to the HyperElasticOperator class.
|
||||
Solver* PreconditionerFactory::NewPreconditioner(const mfem::OperatorHandle& oh)
|
||||
{
|
||||
PetscParMatrix *pP;
|
||||
oh.Get(pP);
|
||||
return new PetscPreconditioner(*pP,"jfnk_");
|
||||
}
|
||||
|
||||
double ElasticEnergyCoefficient::Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip)
|
||||
@@ -710,8 +759,8 @@ double ElasticEnergyCoefficient::Eval(ElementTransformation &T,
|
||||
|
||||
void InitialDeformation(const Vector &x, Vector &y)
|
||||
{
|
||||
// set the initial configuration to be the same as the reference, stress
|
||||
// free, configuration
|
||||
// set the initial configuration to be the same as the reference,
|
||||
// stress free, configuration
|
||||
y = x;
|
||||
}
|
||||
|
||||
|
||||
@@ -84,6 +84,10 @@ EX9_E_ARGS := -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts r
|
||||
EX9_ES_ARGS := -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_expl --no-step
|
||||
EX9_IS_ARGS := -m ../../data/periodic-hexagon.mesh --usepetsc --petscopts rc_ex9p_impl --implicit -tf 0.5
|
||||
EX10_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p -tf 30 -s 3 -rs 2 -dt 3
|
||||
EX10_MF_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_mf -tf 6 -s 3 -rs 0 -dt 3
|
||||
EX10_MFOP_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_mfop -tf 6 -s 3 -rs 0 -dt 3
|
||||
EX10_JFNK_ARGS := -m ../../data/beam-quad.mesh --usepetsc --petscopts rc_ex10p_jfnk --jfnk -tf 6 -s 3 -rs 0 -dt 3
|
||||
|
||||
ex1p-test-par: ex1p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX1_ARGS_W))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX1_ARGS_P))
|
||||
@@ -107,6 +111,9 @@ ex9p-test-par: ex9p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX9_IS_ARGS))
|
||||
ex10p-test-par: ex10p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX10_ARGS))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX10_MF_ARGS))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX10_MFOP_ARGS))
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(TESTNAME),$(EX10_JFNK_ARGS))
|
||||
|
||||
# Testing: "test" target and mfem-test* variables are defined in config/test.mk
|
||||
|
||||
|
||||
@@ -0,0 +1,5 @@
|
||||
# matrix-free Jacobian action, preconditioner constructed using PetscPreconditionerFactory
|
||||
-snes_monitor
|
||||
-snes_mf_operator
|
||||
-ksp_type minres
|
||||
-jfnk_pc_type jacobi
|
||||
@@ -0,0 +1,4 @@
|
||||
# matrix free -> no preconditioner
|
||||
-snes_monitor
|
||||
-snes_mf
|
||||
-ksp_type minres
|
||||
@@ -0,0 +1,5 @@
|
||||
# matrix-free Jacobian action, preconditioner constructed from the matrix obtained by the GetGradient() method
|
||||
-snes_monitor
|
||||
-snes_mf_operator
|
||||
-ksp_type minres
|
||||
-pc_type jacobi
|
||||
@@ -42,12 +42,12 @@ add_mfem_examples(SUNDIALS_EXAMPLES_SRCS ${PFX} "" test_sundials)
|
||||
# ctest -R sundials
|
||||
|
||||
# Command line options for the tests.
|
||||
# Example 9: test explicit CVODE time stepping
|
||||
set(EX9_COMMON_OPTS -m ../../data/periodic-hexagon.mesh -p 0 -s 11)
|
||||
# Example 9: test CVODE with CV_ADAMS (non-stiff implicit) time stepping
|
||||
set(EX9_COMMON_OPTS -m ../../data/periodic-hexagon.mesh -p 0 -s 7)
|
||||
set(EX9_TEST_OPTS ${EX9_COMMON_OPTS} -r 2 -dt 0.0018 -vs 25)
|
||||
set(EX9P_TEST_OPTS ${EX9_COMMON_OPTS} -rp 1 -dt 0.0009 -vs 50)
|
||||
# Example 10: test implicit CVODE time stepping
|
||||
set(EX10_COMMON_OPTS -m ../../data/beam-quad.mesh -o 2 -s 5 -dt 0.15 -vs 10)
|
||||
# Example 10: test CVODE with CV_BDF (stiff implicit) time stepping
|
||||
set(EX10_COMMON_OPTS -m ../../data/beam-quad.mesh -o 2 -s 5 -dt 0.15 -tf 6 -vs 10)
|
||||
set(EX10_TEST_OPTS ${EX10_COMMON_OPTS} -r 2)
|
||||
set(EX10P_TEST_OPTS ${EX10_COMMON_OPTS} -rp 1)
|
||||
# Example 16: use the default options
|
||||
|
||||
+204
-210
@@ -4,16 +4,16 @@
|
||||
// Compile with: make ex10
|
||||
//
|
||||
// Sample runs:
|
||||
// ex10 -m ../../data/beam-quad.mesh -r 2 -o 2 -s 5 -dt 0.15 -vs 10
|
||||
// ex10 -m ../../data/beam-tri.mesh -r 2 -o 2 -s 7 -dt 0.3 -vs 5
|
||||
// ex10 -m ../../data/beam-hex.mesh -r 1 -o 2 -s 5 -dt 0.2 -vs 5
|
||||
// ex10 -m ../../data/beam-quad.mesh -r 2 -o 2 -s 12 -dt 0.15 -vs 10
|
||||
// ex10 -m ../../data/beam-tri.mesh -r 2 -o 2 -s 16 -dt 0.3 -vs 5
|
||||
// ex10 -m ../../data/beam-hex.mesh -r 1 -o 2 -s 12 -dt 0.2 -vs 5
|
||||
// ex10 -m ../../data/beam-tri.mesh -r 2 -o 2 -s 2 -dt 3 -nls kinsol
|
||||
// ex10 -m ../../data/beam-quad.mesh -r 2 -o 2 -s 2 -dt 3 -nls kinsol
|
||||
// ex10 -m ../../data/beam-hex.mesh -r 1 -o 2 -s 2 -dt 3 -nls kinsol
|
||||
// ex10 -m ../../data/beam-quad.mesh -r 2 -o 2 -s 15 -dt 5e-3 -vs 60
|
||||
// ex10 -m ../../data/beam-tri.mesh -r 2 -o 2 -s 16 -dt 0.01 -vs 30
|
||||
// ex10 -m ../../data/beam-hex.mesh -r 1 -o 2 -s 15 -dt 0.01 -vs 30
|
||||
// ex10 -m ../../data/beam-quad-amr.mesh -r 2 -o 2 -s 5 -dt 0.15 -vs 10
|
||||
// ex10 -m ../../data/beam-quad.mesh -r 2 -o 2 -s 14 -dt 0.15 -vs 10
|
||||
// ex10 -m ../../data/beam-tri.mesh -r 2 -o 2 -s 17 -dt 0.01 -vs 30
|
||||
// ex10 -m ../../data/beam-hex.mesh -r 1 -o 2 -s 14 -dt 0.15 -vs 10
|
||||
// ex10 -m ../../data/beam-quad-amr.mesh -r 2 -o 2 -s 12 -dt 0.15 -vs 10
|
||||
//
|
||||
// Description: This examples solves a time dependent nonlinear elasticity
|
||||
// problem of the form dv/dt = H(x) + S v, dx/dt = v, where H is a
|
||||
@@ -53,7 +53,6 @@ using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
class ReducedSystemOperator;
|
||||
class SundialsJacSolver;
|
||||
|
||||
/** After spatial discretization, the hyperelastic model can be written as a
|
||||
* system of ODEs:
|
||||
@@ -92,12 +91,17 @@ protected:
|
||||
|
||||
mutable Vector z; // auxiliary vector
|
||||
|
||||
SparseMatrix *grad_H;
|
||||
SparseMatrix *Jacobian;
|
||||
|
||||
double saved_gamma; // saved gamma value from implicit setup
|
||||
|
||||
public:
|
||||
/// Solver type to use in the ImplicitSolve() method, used by SDIRK methods.
|
||||
enum NonlinearSolverType
|
||||
{
|
||||
NEWTON = 0, ///< Use MFEM's plain NewtonSolver
|
||||
KINSOL = 1 ///< Use SUNDIALS' KINSOL (through MFEM's class KinSolver)
|
||||
KINSOL = 1 ///< Use SUNDIALS' KINSOL (through MFEM's class KINSolver)
|
||||
};
|
||||
|
||||
HyperelasticOperator(FiniteElementSpace &f, Array<int> &ess_bdr,
|
||||
@@ -106,15 +110,41 @@ public:
|
||||
|
||||
/// Compute the right-hand side of the ODE system.
|
||||
virtual void Mult(const Vector &vx, Vector &dvx_dt) const;
|
||||
|
||||
/** Solve the Backward-Euler equation: k = f(x + dt*k, t), for the unknown k.
|
||||
This is the only requirement for high-order SDIRK implicit integration.*/
|
||||
virtual void ImplicitSolve(const double dt, const Vector &x, Vector &k);
|
||||
|
||||
/** Connect the Jacobian linear system solver (SundialsJacSolver) used by
|
||||
SUNDIALS' CVODE and ARKODE time integrators to the internal objects
|
||||
created by HyperelasticOperator. This method is called by the InitSystem
|
||||
method of SundialsJacSolver. */
|
||||
void InitSundialsJacSolver(SundialsJacSolver &sjsolv);
|
||||
|
||||
/// Custom Jacobian system solver for the SUNDIALS time integrators.
|
||||
/** For the ODE system represented by HyperelasticOperator
|
||||
|
||||
M dv/dt = -(H(x) + S*v)
|
||||
dx/dt = v,
|
||||
|
||||
this class facilitates the solution of linear systems of the form
|
||||
|
||||
(M + γS) yv + γJ yx = M bv, J=(dH/dx)(x)
|
||||
- γ yv + yx = bx
|
||||
|
||||
for given bv, bx, x, and γ = GetTimeStep(). */
|
||||
|
||||
/** Linear solve applicable to the SUNDIALS format.
|
||||
Solves (Mass - dt J) y = Mass b, where in our case:
|
||||
Mass = | M 0 | J = | -S -grad_H | y = | v_hat | b = | b_v |
|
||||
| 0 I | | I 0 | | x_hat | | b_x |
|
||||
The result replaces the rhs b.
|
||||
We substitute x_hat = b_x + dt v_hat and solve
|
||||
(M + dt S + dt^2 grad_H) v_hat = M b_v - dt grad_H b_x. */
|
||||
|
||||
/** Setup the linear system. This method is used by the implicit
|
||||
SUNDIALS solvers. */
|
||||
virtual int SUNImplicitSetup(const Vector &y, const Vector &fy,
|
||||
int jok, int *jcur, double gamma);
|
||||
|
||||
/** Solve the linear system. This method is used by the implicit
|
||||
SUNDIALS solvers. */
|
||||
virtual int SUNImplicitSolve(const Vector &b, Vector &x, double tol);
|
||||
|
||||
double ElasticEnergy(const Vector &x) const;
|
||||
double KineticEnergy(const Vector &v) const;
|
||||
@@ -152,53 +182,6 @@ public:
|
||||
virtual ~ReducedSystemOperator();
|
||||
};
|
||||
|
||||
/// Custom Jacobian system solver for the SUNDIALS time integrators.
|
||||
/** For the ODE system represented by HyperelasticOperator
|
||||
|
||||
M dv/dt = -(H(x) + S*v)
|
||||
dx/dt = v,
|
||||
|
||||
this class facilitates the solution of linear systems of the form
|
||||
|
||||
(M + γS) yv + γJ yx = M bv, J=(dH/dx)(x)
|
||||
- γ yv + yx = bx
|
||||
|
||||
for given bv, bx, x, and γ = GetTimeStep(). */
|
||||
class SundialsJacSolver : public SundialsODELinearSolver
|
||||
{
|
||||
private:
|
||||
BilinearForm *M, *S;
|
||||
NonlinearForm *H;
|
||||
SparseMatrix *grad_H, *Jacobian;
|
||||
Solver *J_solver;
|
||||
|
||||
public:
|
||||
SundialsJacSolver()
|
||||
: M(), S(), H(), grad_H(), Jacobian(), J_solver() { }
|
||||
|
||||
/// Connect the solver to the objects created inside HyperelasticOperator.
|
||||
void SetOperators(BilinearForm &M_, BilinearForm &S_,
|
||||
NonlinearForm &H_, Solver &solver)
|
||||
{
|
||||
M = &M_; S = &S_; H = &H_; J_solver = &solver;
|
||||
}
|
||||
|
||||
/** Linear solve applicable to the SUNDIALS format.
|
||||
Solves (Mass - dt J) y = Mass b, where in our case:
|
||||
Mass = | M 0 | J = | -S -grad_H | y = | v_hat | b = | b_v |
|
||||
| 0 I | | I 0 | | x_hat | | b_x |
|
||||
The result replaces the rhs b.
|
||||
We substitute x_hat = b_x + dt v_hat and solve
|
||||
(M + dt S + dt^2 grad_H) v_hat = M b_v - dt grad_H b_x. */
|
||||
int InitSystem(void *sundials_mem);
|
||||
int SetupSystem(void *sundials_mem, int conv_fail,
|
||||
const Vector &y_pred, const Vector &f_pred, int &jac_cur,
|
||||
Vector &v_temp1, Vector &v_temp2, Vector &v_temp3);
|
||||
int SolveSystem(void *sundials_mem, Vector &b, const Vector &weight,
|
||||
const Vector &y_cur, const Vector &f_cur);
|
||||
int FreeSystem(void *sundials_mem);
|
||||
};
|
||||
|
||||
|
||||
/** Function representing the elastic energy density for the given hyperelastic
|
||||
model+deformation. Used in HyperelasticOperator::GetElasticEnergyDensity. */
|
||||
@@ -243,6 +226,12 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Relative and absolute tolerances for CVODE and ARKODE.
|
||||
const double reltol = 1e-1, abstol = 1e-1;
|
||||
// Since this example uses the loose tolerances defined above, it is
|
||||
// necessary to lower the linear solver tolerance for CVODE which is relative
|
||||
// to the above tolerances.
|
||||
const double cvode_eps_lin = 1e-4;
|
||||
// Similarly, the nonlinear tolerance for ARKODE needs to be tightened.
|
||||
const double arkode_eps_nonlin = 1e-6;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -252,15 +241,24 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
|
||||
"ODE solver: 1 - Backward Euler, 2 - SDIRK2, 3 - SDIRK3,\n\t"
|
||||
" 4 - CVODE implicit, approximate Jacobian,\n\t"
|
||||
" 5 - CVODE implicit, specified Jacobian,\n\t"
|
||||
" 6 - ARKODE implicit, approximate Jacobian,\n\t"
|
||||
" 7 - ARKODE implicit, specified Jacobian,\n\t"
|
||||
" 11 - Forward Euler, 12 - RK2,\n\t"
|
||||
" 13 - RK3 SSP, 14 - RK4,\n\t"
|
||||
" 15 - CVODE (adaptive order) explicit,\n\t"
|
||||
" 16 - ARKODE default (4th order) explicit.");
|
||||
"ODE solver:\n\t"
|
||||
"1 - Backward Euler,\n\t"
|
||||
"2 - SDIRK2, L-stable\n\t"
|
||||
"3 - SDIRK3, L-stable\n\t"
|
||||
"4 - Implicit Midpoint,\n\t"
|
||||
"5 - SDIRK2, A-stable,\n\t"
|
||||
"6 - SDIRK3, A-stable,\n\t"
|
||||
"7 - Forward Euler,\n\t"
|
||||
"8 - RK2,\n\t"
|
||||
"9 - RK3 SSP,\n\t"
|
||||
"10 - RK4,\n\t"
|
||||
"11 - CVODE implicit BDF, approximate Jacobian,\n\t"
|
||||
"12 - CVODE implicit BDF, specified Jacobian,\n\t"
|
||||
"13 - CVODE implicit ADAMS, approximate Jacobian,\n\t"
|
||||
"14 - CVODE implicit ADAMS, specified Jacobian,\n\t"
|
||||
"15 - ARKODE implicit, approximate Jacobian,\n\t"
|
||||
"16 - ARKODE implicit, specified Jacobian,\n\t"
|
||||
"17 - ARKODE explicit, 4th order.");
|
||||
args.AddOption(&nls, "-nls", "--nonlinear-solver",
|
||||
"Nonlinear systems solver: "
|
||||
"\"newton\" (plain Newton) or \"kinsol\" (KINSOL).");
|
||||
@@ -287,72 +285,19 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// check for vaild ODE solver option
|
||||
if (ode_solver_type < 1 || ode_solver_type > 17)
|
||||
{
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
return 1;
|
||||
}
|
||||
|
||||
// 2. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral and hexahedral meshes with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 3. Define the ODE solver used for time integration. Several implicit
|
||||
// singly diagonal implicit Runge-Kutta (SDIRK) methods, as well as
|
||||
// explicit Runge-Kutta methods are available.
|
||||
ODESolver *ode_solver;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKODESolver *arkode = NULL;
|
||||
SundialsJacSolver *sjsolver = NULL;
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
// Implicit L-stable methods
|
||||
case 1: ode_solver = new BackwardEulerSolver; break;
|
||||
case 2: ode_solver = new SDIRK23Solver(2); break;
|
||||
case 3: ode_solver = new SDIRK33Solver; break;
|
||||
case 4:
|
||||
case 5:
|
||||
cvode = new CVODESolver(CV_BDF, CV_NEWTON);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 5)
|
||||
{
|
||||
sjsolver = new SundialsJacSolver;
|
||||
cvode->SetLinearSolver(*sjsolver);
|
||||
}
|
||||
ode_solver = cvode; break;
|
||||
case 6:
|
||||
case 7:
|
||||
arkode = new ARKODESolver(ARKODESolver::IMPLICIT);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 7)
|
||||
{
|
||||
// Custom Jacobian inversion.
|
||||
sjsolver = new SundialsJacSolver;
|
||||
arkode->SetLinearSolver(*sjsolver);
|
||||
}
|
||||
ode_solver = arkode; break;
|
||||
// Explicit methods
|
||||
case 11: ode_solver = new ForwardEulerSolver; break;
|
||||
case 12: ode_solver = new RK2Solver(0.5); break; // midpoint method
|
||||
case 13: ode_solver = new RK3SSPSolver; break;
|
||||
case 14: ode_solver = new RK4Solver; break;
|
||||
case 15:
|
||||
cvode = new CVODESolver(CV_ADAMS, CV_FUNCTIONAL);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
case 16:
|
||||
arkode = new ARKODESolver(ARKODESolver::IMPLICIT);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
ode_solver = arkode; break;
|
||||
// Implicit A-stable methods (not L-stable)
|
||||
case 22: ode_solver = new ImplicitMidpointSolver; break;
|
||||
case 23: ode_solver = new SDIRK23Solver; break;
|
||||
case 24: ode_solver = new SDIRK34Solver; break;
|
||||
default:
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
delete mesh;
|
||||
return 3;
|
||||
}
|
||||
|
||||
// 3. Setup the nonlinear solver
|
||||
map<string,HyperelasticOperator::NonlinearSolverType> nls_map;
|
||||
nls_map["newton"] = HyperelasticOperator::NEWTON;
|
||||
nls_map["kinsol"] = HyperelasticOperator::KINSOL;
|
||||
@@ -439,11 +384,82 @@ int main(int argc, char *argv[])
|
||||
cout << "initial kinetic energy (KE) = " << ke0 << endl;
|
||||
cout << "initial total energy (TE) = " << (ee0 + ke0) << endl;
|
||||
|
||||
// 8. Define the ODE solver used for time integration. Several implicit
|
||||
// singly diagonal implicit Runge-Kutta (SDIRK) methods, as well as
|
||||
// explicit Runge-Kutta methods are available.
|
||||
double t = 0.0;
|
||||
oper.SetTime(t);
|
||||
ode_solver->Init(oper);
|
||||
|
||||
// 8. Perform time-integration (looping over the time iterations, ti, with a
|
||||
ODESolver *ode_solver = NULL;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKStepSolver *arkode = NULL;
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
// Implicit L-stable methods
|
||||
case 1: ode_solver = new BackwardEulerSolver; break;
|
||||
case 2: ode_solver = new SDIRK23Solver(2); break;
|
||||
case 3: ode_solver = new SDIRK33Solver; break;
|
||||
// Implicit A-stable methods (not L-stable)
|
||||
case 4: ode_solver = new ImplicitMidpointSolver; break;
|
||||
case 5: ode_solver = new SDIRK23Solver; break;
|
||||
case 6: ode_solver = new SDIRK34Solver; break;
|
||||
// Explicit methods
|
||||
case 7: ode_solver = new ForwardEulerSolver; break;
|
||||
case 8: ode_solver = new RK2Solver(0.5); break; // midpoint method
|
||||
case 9: ode_solver = new RK3SSPSolver; break;
|
||||
case 10: ode_solver = new RK4Solver; break;
|
||||
// CVODE BDF
|
||||
case 11:
|
||||
case 12:
|
||||
cvode = new CVODESolver(CV_BDF);
|
||||
cvode->Init(oper);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
CVodeSetEpsLin(cvode->GetMem(), cvode_eps_lin);
|
||||
cvode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 11)
|
||||
{
|
||||
cvode->UseSundialsLinearSolver();
|
||||
}
|
||||
ode_solver = cvode; break;
|
||||
// CVODE Adams
|
||||
case 13:
|
||||
case 14:
|
||||
cvode = new CVODESolver(CV_ADAMS);
|
||||
cvode->Init(oper);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
CVodeSetEpsLin(cvode->GetMem(), cvode_eps_lin);
|
||||
cvode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 13)
|
||||
{
|
||||
cvode->UseSundialsLinearSolver();
|
||||
}
|
||||
ode_solver = cvode; break;
|
||||
// ARKStep Implicit methods
|
||||
case 15:
|
||||
case 16:
|
||||
arkode = new ARKStepSolver(ARKStepSolver::IMPLICIT);
|
||||
arkode->Init(oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
ARKStepSetNonlinConvCoef(arkode->GetMem(), arkode_eps_nonlin);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 15)
|
||||
{
|
||||
arkode->UseSundialsLinearSolver();
|
||||
}
|
||||
ode_solver = arkode; break;
|
||||
// ARKStep Explicit methods
|
||||
case 17:
|
||||
arkode = new ARKStepSolver(ARKStepSolver::EXPLICIT);
|
||||
arkode->Init(oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
ode_solver = arkode; break;
|
||||
}
|
||||
|
||||
// Initialize MFEM integrators, SUNDIALS integrators are initialized above
|
||||
if (ode_solver_type < 11) { ode_solver->Init(oper); }
|
||||
|
||||
// 9. Perform time-integration (looping over the time iterations, ti, with a
|
||||
// time-step dt).
|
||||
bool last_step = false;
|
||||
for (int ti = 1; !last_step; ti++)
|
||||
@@ -478,7 +494,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 9. Save the displaced mesh, the velocity and elastic energy.
|
||||
// 10. Save the displaced mesh, the velocity and elastic energy.
|
||||
{
|
||||
v.SetFromTrueVector(); x.SetFromTrueVector();
|
||||
GridFunction *nodes = &x;
|
||||
@@ -497,9 +513,8 @@ int main(int argc, char *argv[])
|
||||
w.Save(ee_ofs);
|
||||
}
|
||||
|
||||
// 10. Free the used memory.
|
||||
// 11. Free the used memory.
|
||||
delete ode_solver;
|
||||
delete sjsolver;
|
||||
delete mesh;
|
||||
|
||||
return 0;
|
||||
@@ -579,81 +594,14 @@ ReducedSystemOperator::~ReducedSystemOperator()
|
||||
}
|
||||
|
||||
|
||||
int SundialsJacSolver::InitSystem(void *sundials_mem)
|
||||
{
|
||||
TimeDependentOperator *td_oper = GetTimeDependentOperator(sundials_mem);
|
||||
HyperelasticOperator *he_oper;
|
||||
|
||||
// During development, we use dynamic_cast<> to ensure the setup is correct:
|
||||
he_oper = dynamic_cast<HyperelasticOperator*>(td_oper);
|
||||
MFEM_VERIFY(he_oper, "operator is not HyperelasticOperator");
|
||||
|
||||
// When the implementation is finalized, we can switch to static_cast<>:
|
||||
// he_oper = static_cast<HyperelasticOperator*>(td_oper);
|
||||
|
||||
he_oper->InitSundialsJacSolver(*this);
|
||||
return 0;
|
||||
}
|
||||
|
||||
int SundialsJacSolver::SetupSystem(void *sundials_mem, int conv_fail,
|
||||
const Vector &y_pred, const Vector &f_pred,
|
||||
int &jac_cur, Vector &v_temp1,
|
||||
Vector &v_temp2, Vector &v_temp3)
|
||||
{
|
||||
int sc = y_pred.Size() / 2;
|
||||
const Vector x(y_pred.GetData() + sc, sc);
|
||||
double dt = GetTimeStep(sundials_mem);
|
||||
|
||||
// J = M + dt*(S + dt*grad(H))
|
||||
delete Jacobian;
|
||||
Jacobian = Add(1.0, M->SpMat(), dt, S->SpMat());
|
||||
grad_H = dynamic_cast<SparseMatrix *>(&H->GetGradient(x));
|
||||
Jacobian->Add(dt * dt, *grad_H);
|
||||
|
||||
J_solver->SetOperator(*Jacobian);
|
||||
|
||||
jac_cur = 1;
|
||||
return 0;
|
||||
}
|
||||
|
||||
int SundialsJacSolver::SolveSystem(void *sundials_mem, Vector &b,
|
||||
const Vector &weight, const Vector &y_cur,
|
||||
const Vector &f_cur)
|
||||
{
|
||||
int sc = b.Size() / 2;
|
||||
// Vector x(y_cur.GetData() + sc, sc);
|
||||
Vector b_v(b.GetData() + 0, sc);
|
||||
Vector b_x(b.GetData() + sc, sc);
|
||||
Vector rhs(sc);
|
||||
double dt = GetTimeStep(sundials_mem);
|
||||
|
||||
// rhs = M b_v - dt*grad(H) b_x
|
||||
grad_H->Mult(b_x, rhs);
|
||||
rhs *= -dt;
|
||||
M->AddMult(b_v, rhs);
|
||||
|
||||
J_solver->iterative_mode = false;
|
||||
J_solver->Mult(rhs, b_v);
|
||||
|
||||
b_x.Add(dt, b_v);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
int SundialsJacSolver::FreeSystem(void *sundials_mem)
|
||||
{
|
||||
delete Jacobian;
|
||||
return 0;
|
||||
}
|
||||
|
||||
|
||||
HyperelasticOperator::HyperelasticOperator(FiniteElementSpace &f,
|
||||
Array<int> &ess_bdr, double visc,
|
||||
double mu, double K,
|
||||
NonlinearSolverType nls_type)
|
||||
: TimeDependentOperator(2*f.GetTrueVSize(), 0.0), fespace(f),
|
||||
M(&fespace), S(&fespace), H(&fespace),
|
||||
viscosity(visc), z(height/2)
|
||||
viscosity(visc), z(height/2),
|
||||
grad_H(NULL), Jacobian(NULL)
|
||||
{
|
||||
const double rel_tol = 1e-8;
|
||||
const int skip_zero_entries = 0;
|
||||
@@ -702,23 +650,24 @@ HyperelasticOperator::HyperelasticOperator(FiniteElementSpace &f,
|
||||
|
||||
if (nls_type == KINSOL)
|
||||
{
|
||||
KinSolver *kinsolver = new KinSolver(KIN_NONE, true);
|
||||
kinsolver->SetMaxSetupCalls(4);
|
||||
KINSolver *kinsolver = new KINSolver(KIN_NONE, true);
|
||||
newton_solver = kinsolver;
|
||||
newton_solver->SetOperator(*reduced_oper);
|
||||
newton_solver->SetMaxIter(200);
|
||||
newton_solver->SetRelTol(rel_tol);
|
||||
newton_solver->SetPrintLevel(0);
|
||||
kinsolver->SetMaxSetupCalls(4);
|
||||
}
|
||||
else
|
||||
{
|
||||
newton_solver = new NewtonSolver();
|
||||
newton_solver->SetOperator(*reduced_oper);
|
||||
newton_solver->SetMaxIter(10);
|
||||
newton_solver->SetRelTol(rel_tol);
|
||||
newton_solver->SetPrintLevel(-1);
|
||||
}
|
||||
newton_solver->SetSolver(*J_solver);
|
||||
newton_solver->iterative_mode = false;
|
||||
newton_solver->SetOperator(*reduced_oper);
|
||||
}
|
||||
|
||||
void HyperelasticOperator::Mult(const Vector &vx, Vector &dvx_dt) const
|
||||
@@ -768,9 +717,53 @@ void HyperelasticOperator::ImplicitSolve(const double dt,
|
||||
add(v, dt, dv_dt, dx_dt);
|
||||
}
|
||||
|
||||
void HyperelasticOperator::InitSundialsJacSolver(SundialsJacSolver &sjsolv)
|
||||
int HyperelasticOperator::SUNImplicitSetup(const Vector &y,
|
||||
const Vector &fy, int jok, int *jcur,
|
||||
double gamma)
|
||||
{
|
||||
sjsolv.SetOperators(M, S, H, *J_solver);
|
||||
int sc = y.Size() / 2;
|
||||
const Vector x(y.GetData() + sc, sc);
|
||||
|
||||
// J = M + dt*(S + dt*grad(H))
|
||||
if (Jacobian) { delete Jacobian; }
|
||||
Jacobian = Add(1.0, M.SpMat(), gamma, S.SpMat());
|
||||
grad_H = dynamic_cast<SparseMatrix *>(&H.GetGradient(x));
|
||||
Jacobian->Add(gamma * gamma, *grad_H);
|
||||
|
||||
// Set Jacobian solve operator
|
||||
J_solver->SetOperator(*Jacobian);
|
||||
|
||||
// Indicate that the Jacobian was updated
|
||||
*jcur = 1;
|
||||
|
||||
// Save gamma for use in solve
|
||||
saved_gamma = gamma;
|
||||
|
||||
// Return success
|
||||
return 0;
|
||||
}
|
||||
|
||||
int HyperelasticOperator::SUNImplicitSolve(const Vector &b, Vector &x,
|
||||
double tol)
|
||||
{
|
||||
int sc = b.Size() / 2;
|
||||
Vector b_v(b.GetData() + 0, sc);
|
||||
Vector b_x(b.GetData() + sc, sc);
|
||||
Vector x_v(x.GetData() + 0, sc);
|
||||
Vector x_x(x.GetData() + sc, sc);
|
||||
Vector rhs(sc);
|
||||
|
||||
// rhs = M b_v - dt*grad(H) b_x
|
||||
grad_H->Mult(b_x, rhs);
|
||||
rhs *= -saved_gamma;
|
||||
M.AddMult(b_v, rhs);
|
||||
|
||||
J_solver->iterative_mode = false;
|
||||
J_solver->Mult(rhs, x_v);
|
||||
|
||||
add(b_x, saved_gamma, x_v, x_x);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
double HyperelasticOperator::ElasticEnergy(const Vector &x) const
|
||||
@@ -792,6 +785,7 @@ void HyperelasticOperator::GetElasticEnergyDensity(
|
||||
|
||||
HyperelasticOperator::~HyperelasticOperator()
|
||||
{
|
||||
delete Jacobian;
|
||||
delete newton_solver;
|
||||
delete J_solver;
|
||||
delete J_prec;
|
||||
|
||||
+219
-229
@@ -4,16 +4,16 @@
|
||||
// Compile with: make ex10p
|
||||
//
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-quad.mesh -rp 1 -o 2 -s 5 -dt 0.15 -vs 10
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-tri.mesh -rp 1 -o 2 -s 7 -dt 0.25 -vs 10
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-hex.mesh -rp 0 -o 2 -s 5 -dt 0.15 -vs 10
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-quad.mesh -rp 1 -o 2 -s 12 -dt 0.15 -vs 10
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-tri.mesh -rp 1 -o 2 -s 16 -dt 0.25 -vs 10
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-hex.mesh -rp 0 -o 2 -s 12 -dt 0.15 -vs 10
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-tri.mesh -rp 1 -o 2 -s 2 -dt 3 -nls kinsol
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-quad.mesh -rp 1 -o 2 -s 2 -dt 3 -nls kinsol
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-hex.mesh -rs 1 -o 2 -s 2 -dt 3 -nls kinsol
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-quad.mesh -rp 1 -o 2 -s 15 -dt 3e-3 -vs 120
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-tri.mesh -rp 1 -o 2 -s 16 -dt 5e-3 -vs 60
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-hex.mesh -rp 0 -o 2 -s 15 -dt 5e-3 -vs 60
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-quad-amr.mesh -rp 1 -o 2 -s 5 -dt 0.15 -vs 10
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-quad.mesh -rp 1 -o 2 -s 14 -dt 0.15 -vs 10
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-tri.mesh -rp 1 -o 2 -s 17 -dt 5e-3 -vs 60
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-hex.mesh -rp 0 -o 2 -s 14 -dt 0.15 -vs 10
|
||||
// mpirun -np 4 ex10p -m ../../data/beam-quad-amr.mesh -rp 1 -o 2 -s 12 -dt 0.15 -vs 10
|
||||
//
|
||||
// Description: This examples solves a time dependent nonlinear elasticity
|
||||
// problem of the form dv/dt = H(x) + S v, dx/dt = v, where H is a
|
||||
@@ -53,7 +53,6 @@ using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
class ReducedSystemOperator;
|
||||
class SundialsJacSolver;
|
||||
|
||||
/** After spatial discretization, the hyperelastic model can be written as a
|
||||
* system of ODEs:
|
||||
@@ -94,12 +93,17 @@ protected:
|
||||
|
||||
mutable Vector z; // auxiliary vector
|
||||
|
||||
const SparseMatrix *local_grad_H;
|
||||
HypreParMatrix *Jacobian;
|
||||
|
||||
double saved_gamma; // saved gamma value from implicit setup
|
||||
|
||||
public:
|
||||
/// Solver type to use in the ImplicitSolve() method, used by SDIRK methods.
|
||||
enum NonlinearSolverType
|
||||
{
|
||||
NEWTON = 0, ///< Use MFEM's plain NewtonSolver
|
||||
KINSOL = 1 ///< Use SUNDIALS' KINSOL (through MFEM's class KinSolver)
|
||||
KINSOL = 1 ///< Use SUNDIALS' KINSOL (through MFEM's class KINSolver)
|
||||
};
|
||||
|
||||
HyperelasticOperator(ParFiniteElementSpace &f, Array<int> &ess_bdr,
|
||||
@@ -108,15 +112,41 @@ public:
|
||||
|
||||
/// Compute the right-hand side of the ODE system.
|
||||
virtual void Mult(const Vector &vx, Vector &dvx_dt) const;
|
||||
|
||||
/** Solve the Backward-Euler equation: k = f(x + dt*k, t), for the unknown k.
|
||||
This is the only requirement for high-order SDIRK implicit integration.*/
|
||||
virtual void ImplicitSolve(const double dt, const Vector &x, Vector &k);
|
||||
|
||||
/** Connect the Jacobian linear system solver (SundialsJacSolver) used by
|
||||
SUNDIALS' CVODE and ARKODE time integrators to the internal objects
|
||||
created by HyperelasticOperator. This method is called by the InitSystem
|
||||
method of SundialsJacSolver. */
|
||||
void InitSundialsJacSolver(SundialsJacSolver &sjsolv);
|
||||
|
||||
/// Custom Jacobian system solver for the SUNDIALS time integrators.
|
||||
/** For the ODE system represented by HyperelasticOperator
|
||||
|
||||
M dv/dt = -(H(x) + S*v)
|
||||
dx/dt = v,
|
||||
|
||||
this class facilitates the solution of linear systems of the form
|
||||
|
||||
(M + γS) yv + γJ yx = M bv, J=(dH/dx)(x)
|
||||
- γ yv + yx = bx
|
||||
|
||||
for given bv, bx, x, and γ = GetTimeStep(). */
|
||||
|
||||
/** Linear solve applicable to the SUNDIALS format.
|
||||
Solves (Mass - dt J) y = Mass b, where in our case:
|
||||
Mass = | M 0 | J = | -S -grad_H | y = | v_hat | b = | b_v |
|
||||
| 0 I | | I 0 | | x_hat | | b_x |
|
||||
The result replaces the rhs b.
|
||||
We substitute x_hat = b_x + dt v_hat and solve
|
||||
(M + dt S + dt^2 grad_H) v_hat = M b_v - dt grad_H b_x. */
|
||||
|
||||
/** Setup the linear system. This method is used by the implicit
|
||||
SUNDIALS solvers. */
|
||||
virtual int SUNImplicitSetup(const Vector &y, const Vector &fy,
|
||||
int jok, int *jcur, double gamma);
|
||||
|
||||
/** Solve the linear system. This method is used by the implicit
|
||||
SUNDIALS solvers. */
|
||||
virtual int SUNImplicitSolve(const Vector &b, Vector &x, double tol);
|
||||
|
||||
double ElasticEnergy(const ParGridFunction &x) const;
|
||||
double KineticEnergy(const ParGridFunction &v) const;
|
||||
@@ -157,57 +187,6 @@ public:
|
||||
virtual ~ReducedSystemOperator();
|
||||
};
|
||||
|
||||
/// Custom Jacobian system solver for the SUNDIALS time integrators.
|
||||
/** For the ODE system represented by HyperelasticOperator
|
||||
|
||||
M dv/dt = -(H(x) + S*v)
|
||||
dx/dt = v,
|
||||
|
||||
this class facilitates the solution of linear systems of the form
|
||||
|
||||
(M + γS) yv + γJ yx = M bv, J=(dH/dx)(x)
|
||||
- γ yv + yx = bx
|
||||
|
||||
for given bv, bx, x, and γ = GetTimeStep(). */
|
||||
class SundialsJacSolver : public SundialsODELinearSolver
|
||||
{
|
||||
private:
|
||||
ParBilinearForm *M, *S;
|
||||
ParNonlinearForm *H;
|
||||
const SparseMatrix *local_grad_H;
|
||||
HypreParMatrix *Jacobian;
|
||||
Solver *J_solver;
|
||||
const Array<int> *ess_tdof_list;
|
||||
|
||||
public:
|
||||
SundialsJacSolver()
|
||||
: M(), S(), H(), local_grad_H(), Jacobian(), J_solver() { }
|
||||
|
||||
/// Connect the solver to the objects created inside HyperelasticOperator.
|
||||
void SetOperators(ParBilinearForm &M_, ParBilinearForm &S_,
|
||||
ParNonlinearForm &H_, Solver &solver,
|
||||
const Array<int> &ess_tdof_list_)
|
||||
{
|
||||
M = &M_; S = &S_; H = &H_; J_solver = &solver;
|
||||
ess_tdof_list = &ess_tdof_list_;
|
||||
}
|
||||
|
||||
/** Linear solve applicable to the SUNDIALS format.
|
||||
Solves (Mass - dt J) y = Mass b, where in our case:
|
||||
Mass = | M 0 | J = | -S -grad_H | y = | v_hat | b = | b_v |
|
||||
| 0 I | | I 0 | | x_hat | | b_x |
|
||||
The result replaces the rhs b.
|
||||
We substitute x_hat = b_x + dt v_hat and solve
|
||||
(M + dt S + dt^2 grad_H) v_hat = M b_v - dt grad_H b_x. */
|
||||
int InitSystem(void *sundials_mem);
|
||||
int SetupSystem(void *sundials_mem, int conv_fail,
|
||||
const Vector &y_pred, const Vector &f_pred, int &jac_cur,
|
||||
Vector &v_temp1, Vector &v_temp2, Vector &v_temp3);
|
||||
int SolveSystem(void *sundials_mem, Vector &b, const Vector &weight,
|
||||
const Vector &y_cur, const Vector &f_cur);
|
||||
int FreeSystem(void *sundials_mem);
|
||||
};
|
||||
|
||||
|
||||
/** Function representing the elastic energy density for the given hyperelastic
|
||||
model+deformation. Used in HyperelasticOperator::GetElasticEnergyDensity. */
|
||||
@@ -259,6 +238,12 @@ int main(int argc, char *argv[])
|
||||
|
||||
// Relative and absolute tolerances for CVODE and ARKODE.
|
||||
const double reltol = 1e-1, abstol = 1e-1;
|
||||
// Since this example uses the loose tolerances defined above, it is
|
||||
// necessary to lower the linear solver tolerance for CVODE which is relative
|
||||
// to the above tolerances.
|
||||
const double cvode_eps_lin = 1e-4;
|
||||
// Similarly, the nonlinear tolerance for ARKODE needs to be tightened.
|
||||
const double arkode_eps_nonlin = 1e-6;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
@@ -270,15 +255,24 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
|
||||
"ODE solver: 1 - Backward Euler, 2 - SDIRK2, 3 - SDIRK3,\n\t"
|
||||
" 4 - CVODE implicit, approximate Jacobian,\n\t"
|
||||
" 5 - CVODE implicit, specified Jacobian,\n\t"
|
||||
" 6 - ARKODE implicit, approximate Jacobian,\n\t"
|
||||
" 7 - ARKODE implicit, specified Jacobian,\n\t"
|
||||
" 11 - Forward Euler, 12 - RK2,\n\t"
|
||||
" 13 - RK3 SSP, 14 - RK4,\n\t"
|
||||
" 15 - CVODE (adaptive order) explicit,\n\t"
|
||||
" 16 - ARKODE default (4th order) explicit.");
|
||||
"ODE solver:\n\t"
|
||||
"1 - Backward Euler,\n\t"
|
||||
"2 - SDIRK2, L-stable\n\t"
|
||||
"3 - SDIRK3, L-stable\n\t"
|
||||
"4 - Implicit Midpoint,\n\t"
|
||||
"5 - SDIRK2, A-stable,\n\t"
|
||||
"6 - SDIRK3, A-stable,\n\t"
|
||||
"7 - Forward Euler,\n\t"
|
||||
"8 - RK2,\n\t"
|
||||
"9 - RK3 SSP,\n\t"
|
||||
"10 - RK4,\n\t"
|
||||
"11 - CVODE implicit BDF, approximate Jacobian,\n\t"
|
||||
"12 - CVODE implicit BDF, specified Jacobian,\n\t"
|
||||
"13 - CVODE implicit ADAMS, approximate Jacobian,\n\t"
|
||||
"14 - CVODE implicit ADAMS, specified Jacobian,\n\t"
|
||||
"15 - ARKODE implicit, approximate Jacobian,\n\t"
|
||||
"16 - ARKODE implicit, specified Jacobian,\n\t"
|
||||
"17 - ARKODE explicit, 4th order.");
|
||||
args.AddOption(&nls, "-nls", "--nonlinear-solver",
|
||||
"Nonlinear systems solver: "
|
||||
"\"newton\" (plain Newton) or \"kinsol\" (KINSOL).");
|
||||
@@ -312,76 +306,24 @@ int main(int argc, char *argv[])
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
// check for vaild ODE solver option
|
||||
if (ode_solver_type < 1 || ode_solver_type > 17)
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
}
|
||||
MPI_Finalize();
|
||||
return 1;
|
||||
}
|
||||
|
||||
// 3. Read the serial mesh from the given mesh file on all processors. We can
|
||||
// handle triangular, quadrilateral, tetrahedral and hexahedral meshes
|
||||
// with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 4. Define the ODE solver used for time integration. Several implicit
|
||||
// singly diagonal implicit Runge-Kutta (SDIRK) methods, as well as
|
||||
// explicit Runge-Kutta methods are available.
|
||||
ODESolver *ode_solver;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKODESolver *arkode = NULL;
|
||||
SundialsJacSolver *sjsolver = NULL;
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
// Implicit L-stable methods
|
||||
case 1: ode_solver = new BackwardEulerSolver; break;
|
||||
case 2: ode_solver = new SDIRK23Solver(2); break;
|
||||
case 3: ode_solver = new SDIRK33Solver; break;
|
||||
case 4:
|
||||
case 5:
|
||||
cvode = new CVODESolver(MPI_COMM_WORLD, CV_BDF, CV_NEWTON);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 5)
|
||||
{
|
||||
sjsolver = new SundialsJacSolver;
|
||||
cvode->SetLinearSolver(*sjsolver); // Custom Jacobian inversion.
|
||||
}
|
||||
ode_solver = cvode; break;
|
||||
case 6:
|
||||
case 7:
|
||||
arkode = new ARKODESolver(MPI_COMM_WORLD, ARKODESolver::IMPLICIT);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 7)
|
||||
{
|
||||
sjsolver = new SundialsJacSolver;
|
||||
arkode->SetLinearSolver(*sjsolver); // Custom Jacobian inversion.
|
||||
}
|
||||
ode_solver = arkode; break;
|
||||
// Explicit methods
|
||||
case 11: ode_solver = new ForwardEulerSolver; break;
|
||||
case 12: ode_solver = new RK2Solver(0.5); break; // midpoint method
|
||||
case 13: ode_solver = new RK3SSPSolver; break;
|
||||
case 14: ode_solver = new RK4Solver; break;
|
||||
case 15:
|
||||
cvode = new CVODESolver(MPI_COMM_WORLD, CV_ADAMS, CV_FUNCTIONAL);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
case 16:
|
||||
arkode = new ARKODESolver(MPI_COMM_WORLD, ARKODESolver::EXPLICIT);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
ode_solver = arkode; break;
|
||||
// Implicit A-stable methods (not L-stable)
|
||||
case 22: ode_solver = new ImplicitMidpointSolver; break;
|
||||
case 23: ode_solver = new SDIRK23Solver; break;
|
||||
case 24: ode_solver = new SDIRK34Solver; break;
|
||||
default:
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
}
|
||||
delete mesh;
|
||||
MPI_Finalize();
|
||||
return 3;
|
||||
}
|
||||
|
||||
// 4. Nonlinear solver
|
||||
map<string,HyperelasticOperator::NonlinearSolverType> nls_map;
|
||||
nls_map["newton"] = HyperelasticOperator::NEWTON;
|
||||
nls_map["kinsol"] = HyperelasticOperator::KINSOL;
|
||||
@@ -391,7 +333,6 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
cout << "Unknown type of nonlinear solver: " << nls << endl;
|
||||
}
|
||||
delete ode_solver;
|
||||
delete mesh;
|
||||
MPI_Finalize();
|
||||
return 4;
|
||||
@@ -495,11 +436,82 @@ int main(int argc, char *argv[])
|
||||
cout << "initial total energy (TE) = " << (ee0 + ke0) << endl;
|
||||
}
|
||||
|
||||
// 10. Define the ODE solver used for time integration. Several implicit
|
||||
// singly diagonal implicit Runge-Kutta (SDIRK) methods, as well as
|
||||
// explicit Runge-Kutta methods are available.
|
||||
double t = 0.0;
|
||||
oper.SetTime(t);
|
||||
ode_solver->Init(oper);
|
||||
|
||||
// 10. Perform time-integration
|
||||
ODESolver *ode_solver = NULL;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKStepSolver *arkode = NULL;
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
// Implicit L-stable methods
|
||||
case 1: ode_solver = new BackwardEulerSolver; break;
|
||||
case 2: ode_solver = new SDIRK23Solver(2); break;
|
||||
case 3: ode_solver = new SDIRK33Solver; break;
|
||||
// Implicit A-stable methods (not L-stable)
|
||||
case 4: ode_solver = new ImplicitMidpointSolver; break;
|
||||
case 5: ode_solver = new SDIRK23Solver; break;
|
||||
case 6: ode_solver = new SDIRK34Solver; break;
|
||||
// Explicit methods
|
||||
case 7: ode_solver = new ForwardEulerSolver; break;
|
||||
case 8: ode_solver = new RK2Solver(0.5); break; // midpoint method
|
||||
case 9: ode_solver = new RK3SSPSolver; break;
|
||||
case 10: ode_solver = new RK4Solver; break;
|
||||
// CVODE BDF
|
||||
case 11:
|
||||
case 12:
|
||||
cvode = new CVODESolver(MPI_COMM_WORLD, CV_BDF);
|
||||
cvode->Init(oper);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
CVodeSetEpsLin(cvode->GetMem(), cvode_eps_lin);
|
||||
cvode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 11)
|
||||
{
|
||||
cvode->UseSundialsLinearSolver();
|
||||
}
|
||||
ode_solver = cvode; break;
|
||||
// CVODE Adams
|
||||
case 13:
|
||||
case 14:
|
||||
cvode = new CVODESolver(MPI_COMM_WORLD, CV_ADAMS);
|
||||
cvode->Init(oper);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
CVodeSetEpsLin(cvode->GetMem(), cvode_eps_lin);
|
||||
cvode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 13)
|
||||
{
|
||||
cvode->UseSundialsLinearSolver();
|
||||
}
|
||||
ode_solver = cvode; break;
|
||||
// ARKStep Implicit methods
|
||||
case 15:
|
||||
case 16:
|
||||
arkode = new ARKStepSolver(MPI_COMM_WORLD, ARKStepSolver::IMPLICIT);
|
||||
arkode->Init(oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
ARKStepSetNonlinConvCoef(arkode->GetMem(), arkode_eps_nonlin);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 15)
|
||||
{
|
||||
arkode->UseSundialsLinearSolver();
|
||||
}
|
||||
ode_solver = arkode; break;
|
||||
// ARKStep Explicit methods
|
||||
case 17:
|
||||
arkode = new ARKStepSolver(MPI_COMM_WORLD, ARKStepSolver::EXPLICIT);
|
||||
arkode->Init(oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
ode_solver = arkode; break;
|
||||
}
|
||||
|
||||
// Initialize MFEM integrators, SUNDIALS integrators are initialized above
|
||||
if (ode_solver_type < 11) { ode_solver->Init(oper); }
|
||||
|
||||
// 11. Perform time-integration
|
||||
// (looping over the time iterations, ti, with a time-step dt).
|
||||
bool last_step = false;
|
||||
for (int ti = 1; !last_step; ti++)
|
||||
@@ -538,7 +550,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 11. Save the displaced mesh, the velocity and elastic energy.
|
||||
// 12. Save the displaced mesh, the velocity and elastic energy.
|
||||
{
|
||||
v_gf.SetFromTrueVector(); x_gf.SetFromTrueVector();
|
||||
GridFunction *nodes = &x_gf;
|
||||
@@ -563,9 +575,8 @@ int main(int argc, char *argv[])
|
||||
w_gf.Save(ee_ofs);
|
||||
}
|
||||
|
||||
// 12. Free the used memory.
|
||||
// 13. Free the used memory.
|
||||
delete ode_solver;
|
||||
delete sjsolver;
|
||||
delete pmesh;
|
||||
|
||||
MPI_Finalize();
|
||||
@@ -653,92 +664,14 @@ ReducedSystemOperator::~ReducedSystemOperator()
|
||||
}
|
||||
|
||||
|
||||
int SundialsJacSolver::InitSystem(void *sundials_mem)
|
||||
{
|
||||
TimeDependentOperator *td_oper = GetTimeDependentOperator(sundials_mem);
|
||||
HyperelasticOperator *he_oper;
|
||||
|
||||
// During development, we use dynamic_cast<> to ensure the setup is correct:
|
||||
he_oper = dynamic_cast<HyperelasticOperator*>(td_oper);
|
||||
MFEM_VERIFY(he_oper, "operator is not HyperelasticOperator");
|
||||
|
||||
// When the implementation is finalized, we can switch to static_cast<>:
|
||||
// he_oper = static_cast<HyperelasticOperator*>(td_oper);
|
||||
|
||||
he_oper->InitSundialsJacSolver(*this);
|
||||
return 0;
|
||||
}
|
||||
|
||||
int SundialsJacSolver::SetupSystem(void *sundials_mem, int conv_fail,
|
||||
const Vector &y_pred, const Vector &f_pred,
|
||||
int &jac_cur, Vector &v_temp1,
|
||||
Vector &v_temp2, Vector &v_temp3)
|
||||
{
|
||||
int sc = y_pred.Size() / 2;
|
||||
const Vector x(y_pred.GetData() + sc, sc);
|
||||
double dt = GetTimeStep(sundials_mem);
|
||||
|
||||
// J = M + dt*(S + dt*grad(H))
|
||||
delete Jacobian;
|
||||
SparseMatrix *localJ = Add(1.0, M->SpMat(), dt, S->SpMat());
|
||||
local_grad_H = &H->GetLocalGradient(x);
|
||||
localJ->Add(dt*dt, *local_grad_H);
|
||||
Jacobian = M->ParallelAssemble(localJ);
|
||||
delete localJ;
|
||||
HypreParMatrix *Je = Jacobian->EliminateRowsCols(*ess_tdof_list);
|
||||
delete Je;
|
||||
|
||||
J_solver->SetOperator(*Jacobian);
|
||||
|
||||
jac_cur = 1;
|
||||
return 0;
|
||||
}
|
||||
|
||||
int SundialsJacSolver::SolveSystem(void *sundials_mem, Vector &b,
|
||||
const Vector &weight, const Vector &y_cur,
|
||||
const Vector &f_cur)
|
||||
{
|
||||
int sc = b.Size() / 2;
|
||||
ParFiniteElementSpace *fes = H->ParFESpace();
|
||||
// Vector x(y_cur.GetData() + sc, sc);
|
||||
Vector b_v(b.GetData() + 0, sc);
|
||||
Vector b_x(b.GetData() + sc, sc);
|
||||
Vector rhs(sc);
|
||||
double dt = GetTimeStep(sundials_mem);
|
||||
|
||||
// We can assume that b_v and b_x have zeros at essential tdofs.
|
||||
|
||||
// rhs = M b_v - dt*grad(H) b_x
|
||||
ParGridFunction lb_x(fes), lrhs(fes);
|
||||
lb_x.Distribute(b_x);
|
||||
local_grad_H->Mult(lb_x, lrhs);
|
||||
lrhs.ParallelAssemble(rhs);
|
||||
rhs *= -dt;
|
||||
M->TrueAddMult(b_v, rhs);
|
||||
rhs.SetSubVector(*ess_tdof_list, 0.0);
|
||||
|
||||
J_solver->iterative_mode = false;
|
||||
J_solver->Mult(rhs, b_v);
|
||||
|
||||
b_x.Add(dt, b_v);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
int SundialsJacSolver::FreeSystem(void *sundials_mem)
|
||||
{
|
||||
delete Jacobian;
|
||||
return 0;
|
||||
}
|
||||
|
||||
|
||||
HyperelasticOperator::HyperelasticOperator(ParFiniteElementSpace &f,
|
||||
Array<int> &ess_bdr, double visc,
|
||||
double mu, double K,
|
||||
NonlinearSolverType nls_type)
|
||||
: TimeDependentOperator(2*f.TrueVSize(), 0.0), fespace(f),
|
||||
M(&fespace), S(&fespace), H(&fespace),
|
||||
viscosity(visc), M_solver(f.GetComm()), z(height/2)
|
||||
viscosity(visc), M_solver(f.GetComm()), z(height/2),
|
||||
local_grad_H(NULL), Jacobian(NULL)
|
||||
{
|
||||
const double rel_tol = 1e-8;
|
||||
const int skip_zero_entries = 0;
|
||||
@@ -788,23 +721,24 @@ HyperelasticOperator::HyperelasticOperator(ParFiniteElementSpace &f,
|
||||
|
||||
if (nls_type == KINSOL)
|
||||
{
|
||||
KinSolver *kinsolver = new KinSolver(f.GetComm(), KIN_NONE, true);
|
||||
kinsolver->SetMaxSetupCalls(4);
|
||||
KINSolver *kinsolver = new KINSolver(f.GetComm(), KIN_NONE, true);
|
||||
newton_solver = kinsolver;
|
||||
newton_solver->SetOperator(*reduced_oper);
|
||||
newton_solver->SetMaxIter(200);
|
||||
newton_solver->SetRelTol(rel_tol);
|
||||
newton_solver->SetPrintLevel(0);
|
||||
kinsolver->SetMaxSetupCalls(4);
|
||||
}
|
||||
else
|
||||
{
|
||||
newton_solver = new NewtonSolver(f.GetComm());
|
||||
newton_solver->SetOperator(*reduced_oper);
|
||||
newton_solver->SetMaxIter(10);
|
||||
newton_solver->SetRelTol(rel_tol);
|
||||
newton_solver->SetPrintLevel(-1);
|
||||
}
|
||||
newton_solver->SetSolver(*J_solver);
|
||||
newton_solver->iterative_mode = false;
|
||||
newton_solver->SetOperator(*reduced_oper);
|
||||
}
|
||||
|
||||
void HyperelasticOperator::Mult(const Vector &vx, Vector &dvx_dt) const
|
||||
@@ -858,9 +792,64 @@ void HyperelasticOperator::ImplicitSolve(const double dt,
|
||||
add(v, dt, dv_dt, dx_dt);
|
||||
}
|
||||
|
||||
void HyperelasticOperator::InitSundialsJacSolver(SundialsJacSolver &sjsolv)
|
||||
int HyperelasticOperator::SUNImplicitSetup(const Vector &y,
|
||||
const Vector &fy, int jok, int *jcur,
|
||||
double gamma)
|
||||
{
|
||||
sjsolv.SetOperators(M, S, H, *J_solver, ess_tdof_list);
|
||||
int sc = y.Size() / 2;
|
||||
const Vector x(y.GetData() + sc, sc);
|
||||
|
||||
// J = M + dt*(S + dt*grad(H))
|
||||
if (Jacobian) { delete Jacobian; }
|
||||
SparseMatrix *localJ = Add(1.0, M.SpMat(), gamma, S.SpMat());
|
||||
local_grad_H = &H.GetLocalGradient(x);
|
||||
localJ->Add(gamma*gamma, *local_grad_H);
|
||||
Jacobian = M.ParallelAssemble(localJ);
|
||||
delete localJ;
|
||||
HypreParMatrix *Je = Jacobian->EliminateRowsCols(ess_tdof_list);
|
||||
delete Je;
|
||||
|
||||
// Set Jacobian solve operator
|
||||
J_solver->SetOperator(*Jacobian);
|
||||
|
||||
// Indicate that the Jacobian was updated
|
||||
*jcur = 1;
|
||||
|
||||
// Save gamma for use in solve
|
||||
saved_gamma = gamma;
|
||||
|
||||
// Return success
|
||||
return 0;
|
||||
}
|
||||
|
||||
int HyperelasticOperator::SUNImplicitSolve(const Vector &b, Vector &x,
|
||||
double tol)
|
||||
{
|
||||
int sc = b.Size() / 2;
|
||||
ParFiniteElementSpace *fes = H.ParFESpace();
|
||||
Vector b_v(b.GetData() + 0, sc);
|
||||
Vector b_x(b.GetData() + sc, sc);
|
||||
Vector x_v(x.GetData() + 0, sc);
|
||||
Vector x_x(x.GetData() + sc, sc);
|
||||
Vector rhs(sc);
|
||||
|
||||
// We can assume that b_v and b_x have zeros at essential tdofs.
|
||||
|
||||
// rhs = M b_v - dt*grad(H) b_x
|
||||
ParGridFunction lb_x(fes), lrhs(fes);
|
||||
lb_x.Distribute(b_x);
|
||||
local_grad_H->Mult(lb_x, lrhs);
|
||||
lrhs.ParallelAssemble(rhs);
|
||||
rhs *= -saved_gamma;
|
||||
M.TrueAddMult(b_v, rhs);
|
||||
rhs.SetSubVector(ess_tdof_list, 0.0);
|
||||
|
||||
J_solver->iterative_mode = false;
|
||||
J_solver->Mult(rhs, x_v);
|
||||
|
||||
add(b_x, saved_gamma, x_v, x_x);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
double HyperelasticOperator::ElasticEnergy(const ParGridFunction &x) const
|
||||
@@ -886,6 +875,7 @@ void HyperelasticOperator::GetElasticEnergyDensity(
|
||||
|
||||
HyperelasticOperator::~HyperelasticOperator()
|
||||
{
|
||||
delete Jacobian;
|
||||
delete newton_solver;
|
||||
delete J_solver;
|
||||
delete J_prec;
|
||||
|
||||
+124
-165
@@ -7,9 +7,9 @@
|
||||
// ex16 -m ../../data/inline-tri.mesh
|
||||
// ex16 -m ../../data/disc-nurbs.mesh -tf 2
|
||||
// ex16 -s 12 -a 0.0 -k 1.0
|
||||
// ex16 -s 1 -a 1.0 -k 0.0 -dt 1e-4 -tf 5e-2 -vs 25
|
||||
// ex16 -s 2 -a 0.5 -k 0.5 -o 4 -dt 1e-4 -tf 2e-2 -vs 25
|
||||
// ex16 -s 3 -dt 1.0e-4 -tf 4.0e-2 -vs 40
|
||||
// ex16 -s 8 -a 1.0 -k 0.0 -dt 1e-4 -tf 5e-2 -vs 25
|
||||
// ex16 -s 9 -a 0.5 -k 0.5 -o 4 -dt 1e-4 -tf 2e-2 -vs 25
|
||||
// ex16 -s 10 -dt 1.0e-4 -tf 4.0e-2 -vs 40
|
||||
// ex16 -m ../../data/fichera-q2.mesh
|
||||
// ex16 -m ../../data/escher.mesh
|
||||
// ex16 -m ../../data/beam-tet.mesh -tf 10 -dt 0.1
|
||||
@@ -58,7 +58,6 @@ protected:
|
||||
|
||||
SparseMatrix Mmat, Kmat;
|
||||
SparseMatrix *T; // T = M + dt K
|
||||
double current_dt;
|
||||
|
||||
CGSolver M_solver; // Krylov solver for inverting the mass matrix M
|
||||
DSmoother M_prec; // Preconditioner for the mass matrix M
|
||||
@@ -75,13 +74,30 @@ public:
|
||||
const Vector &u);
|
||||
|
||||
virtual void Mult(const Vector &u, Vector &du_dt) const;
|
||||
|
||||
/** Solve the Backward-Euler equation: k = f(u + dt*k, t), for the unknown k.
|
||||
This is the only requirement for high-order SDIRK implicit integration.*/
|
||||
virtual void ImplicitSolve(const double dt, const Vector &u, Vector &k);
|
||||
|
||||
/** Solve the system (M + dt K) y = M b. The result y replaces the input b.
|
||||
This method is used by the implicit SUNDIALS solvers. */
|
||||
void SundialsSolve(const double dt, Vector &b);
|
||||
/// Custom Jacobian system solver for the SUNDIALS time integrators.
|
||||
/** For the ODE system represented by ConductionOperator
|
||||
|
||||
M du/dt = -K(u),
|
||||
|
||||
this class facilitates the solution of linear systems of the form
|
||||
|
||||
(M + γK) y = M b,
|
||||
|
||||
for given b, u (not used), and γ = GetTimeStep(). */
|
||||
|
||||
/** Setup the system (M + dt K) x = M b. This method is used by the implicit
|
||||
SUNDIALS solvers. */
|
||||
virtual int SUNImplicitSetup(const Vector &x, const Vector &fx,
|
||||
int jok, int *jcur, double gamma);
|
||||
|
||||
/** Solve the system (M + dt K) x = M b. This method is used by the implicit
|
||||
SUNDIALS solvers. */
|
||||
virtual int SUNImplicitSolve(const Vector &b, Vector &x, double tol);
|
||||
|
||||
/// Update the diffusion BilinearForm K using the given true-dof vector `u`.
|
||||
void SetParameters(const Vector &u);
|
||||
@@ -89,33 +105,6 @@ public:
|
||||
virtual ~ConductionOperator();
|
||||
};
|
||||
|
||||
/// Custom Jacobian system solver for the SUNDIALS time integrators.
|
||||
/** For the ODE system represented by ConductionOperator
|
||||
|
||||
M du/dt = -K(u),
|
||||
|
||||
this class facilitates the solution of linear systems of the form
|
||||
|
||||
(M + γK) y = M b,
|
||||
|
||||
for given b, u (not used), and γ = GetTimeStep(). */
|
||||
class SundialsJacSolver : public SundialsODELinearSolver
|
||||
{
|
||||
private:
|
||||
ConductionOperator *oper;
|
||||
|
||||
public:
|
||||
SundialsJacSolver() : oper(NULL) { }
|
||||
|
||||
int InitSystem(void *sundials_mem);
|
||||
int SetupSystem(void *sundials_mem, int conv_fail,
|
||||
const Vector &y_pred, const Vector &f_pred, int &jac_cur,
|
||||
Vector &v_temp1, Vector &v_temp2, Vector &v_temp3);
|
||||
int SolveSystem(void *sundials_mem, Vector &b, const Vector &weight,
|
||||
const Vector &y_cur, const Vector &f_cur);
|
||||
int FreeSystem(void *sundials_mem);
|
||||
};
|
||||
|
||||
double InitialTemperature(const Vector &x);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
@@ -124,7 +113,7 @@ int main(int argc, char *argv[])
|
||||
const char *mesh_file = "../../data/star.mesh";
|
||||
int ref_levels = 2;
|
||||
int order = 2;
|
||||
int ode_solver_type = 11; // 11 = CVODE implicit
|
||||
int ode_solver_type = 9; // CVODE implicit BDF
|
||||
double t_final = 0.5;
|
||||
double dt = 1.0e-2;
|
||||
double alpha = 1.0e-2;
|
||||
@@ -147,12 +136,19 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
|
||||
"ODE solver:\n"
|
||||
"\t 1/11 - CVODE (explicit/implicit),\n"
|
||||
"\t 2/12 - ARKODE (default explicit/implicit),\n"
|
||||
"\t 3 - ARKODE (Fehlberg-6-4-5)\n"
|
||||
"\t 4 - Forward Euler, 5 - RK2, 6 - RK3 SSP, 7 - RK4,\n"
|
||||
"\t 8 - Backward Euler, 9 - SDIRK23, 10 - SDIRK33.");
|
||||
"ODE solver:\n\t"
|
||||
"1 - Forward Euler,\n\t"
|
||||
"2 - RK2,\n\t"
|
||||
"3 - RK3 SSP,\n\t"
|
||||
"4 - RK4,\n\t"
|
||||
"5 - Backward Euler,\n\t"
|
||||
"6 - SDIRK 2,\n\t"
|
||||
"7 - SDIRK 3,\n\t"
|
||||
"8 - CVODE (implicit Adams),\n\t"
|
||||
"9 - CVODE (implicit BDF),\n\t"
|
||||
"10 - ARKODE (default explicit),\n\t"
|
||||
"11 - ARKODE (explicit Fehlberg-6-4-5),\n\t"
|
||||
"12 - ARKODE (default impicit).");
|
||||
args.AddOption(&t_final, "-tf", "--t-final",
|
||||
"Final time; start time is 0.");
|
||||
args.AddOption(&dt, "-dt", "--time-step",
|
||||
@@ -175,6 +171,11 @@ int main(int argc, char *argv[])
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
if (ode_solver_type < 1 || ode_solver_type > 12)
|
||||
{
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
return 3;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// 2. Read the mesh from the given mesh file. We can handle triangular,
|
||||
@@ -182,61 +183,7 @@ int main(int argc, char *argv[])
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 3. Define the ODE solver used for time integration. Several
|
||||
// SUNDIALS solvers are available, as well as included both
|
||||
// explicit and implicit MFEM ODE solvers.
|
||||
ODESolver *ode_solver = NULL;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKODESolver *arkode = NULL;
|
||||
SundialsJacSolver sun_solver; // Used by the implicit SUNDIALS ode solvers.
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
// SUNDIALS solvers
|
||||
case 1:
|
||||
cvode = new CVODESolver(CV_ADAMS, CV_FUNCTIONAL);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
case 11:
|
||||
cvode = new CVODESolver(CV_BDF, CV_NEWTON);
|
||||
cvode->SetLinearSolver(sun_solver);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
case 2:
|
||||
case 3:
|
||||
arkode = new ARKODESolver(ARKODESolver::EXPLICIT);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 3) { arkode->SetERKTableNum(FEHLBERG_13_7_8); }
|
||||
ode_solver = arkode; break;
|
||||
case 12:
|
||||
arkode = new ARKODESolver(ARKODESolver::IMPLICIT);
|
||||
arkode->SetLinearSolver(sun_solver);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
ode_solver = arkode; break;
|
||||
// Other MFEM explicit methods
|
||||
case 4: ode_solver = new ForwardEulerSolver; break;
|
||||
case 5: ode_solver = new RK2Solver(0.5); break; // midpoint method
|
||||
case 6: ode_solver = new RK3SSPSolver; break;
|
||||
case 7: ode_solver = new RK4Solver; break;
|
||||
// MFEM implicit L-stable methods
|
||||
case 8: ode_solver = new BackwardEulerSolver; break;
|
||||
case 9: ode_solver = new SDIRK23Solver(2); break;
|
||||
case 10: ode_solver = new SDIRK33Solver; break;
|
||||
default:
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
delete mesh;
|
||||
return 3;
|
||||
}
|
||||
|
||||
// Since we want to update the diffusion coefficient after every time step,
|
||||
// we need to use the "one-step" mode of the SUNDIALS solvers.
|
||||
if (cvode) { cvode->SetStepMode(CV_ONE_STEP); }
|
||||
if (arkode) { arkode->SetStepMode(ARK_ONE_STEP); }
|
||||
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 3. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement, where 'ref_levels' is a
|
||||
// command-line parameter.
|
||||
for (int lev = 0; lev < ref_levels; lev++)
|
||||
@@ -244,7 +191,7 @@ int main(int argc, char *argv[])
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 5. Define the vector finite element space representing the current and the
|
||||
// 4. Define the vector finite element space representing the current and the
|
||||
// initial temperature, u_ref.
|
||||
H1_FECollection fe_coll(order, dim);
|
||||
FiniteElementSpace fespace(mesh, &fe_coll);
|
||||
@@ -254,14 +201,14 @@ int main(int argc, char *argv[])
|
||||
|
||||
GridFunction u_gf(&fespace);
|
||||
|
||||
// 6. Set the initial conditions for u. All boundaries are considered
|
||||
// 5. Set the initial conditions for u. All boundaries are considered
|
||||
// natural.
|
||||
FunctionCoefficient u_0(InitialTemperature);
|
||||
u_gf.ProjectCoefficient(u_0);
|
||||
Vector u;
|
||||
u_gf.GetTrueDofs(u);
|
||||
|
||||
// 7. Initialize the conduction operator and the visualization.
|
||||
// 6. Initialize the conduction operator and the visualization.
|
||||
ConductionOperator oper(fespace, alpha, kappa, u);
|
||||
|
||||
u_gf.SetFromTrueDofs(u);
|
||||
@@ -307,13 +254,65 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 7. Define the ODE solver used for time integration.
|
||||
double t = 0.0;
|
||||
ODESolver *ode_solver = NULL;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKStepSolver *arkode = NULL;
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
// MFEM explicit methods
|
||||
case 1: ode_solver = new ForwardEulerSolver; break;
|
||||
case 2: ode_solver = new RK2Solver(0.5); break; // midpoint method
|
||||
case 3: ode_solver = new RK3SSPSolver; break;
|
||||
case 4: ode_solver = new RK4Solver; break;
|
||||
// MFEM implicit L-stable methods
|
||||
case 5: ode_solver = new BackwardEulerSolver; break;
|
||||
case 6: ode_solver = new SDIRK23Solver(2); break;
|
||||
case 7: ode_solver = new SDIRK33Solver; break;
|
||||
// CVODE
|
||||
case 8:
|
||||
cvode = new CVODESolver(CV_ADAMS);
|
||||
cvode->Init(oper);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
case 9:
|
||||
cvode = new CVODESolver(CV_BDF);
|
||||
cvode->Init(oper);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
// ARKODE
|
||||
case 10:
|
||||
case 11:
|
||||
arkode = new ARKStepSolver(ARKStepSolver::EXPLICIT);
|
||||
arkode->Init(oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 11) { arkode->SetERKTableNum(FEHLBERG_13_7_8); }
|
||||
ode_solver = arkode; break;
|
||||
case 12:
|
||||
arkode = new ARKStepSolver(ARKStepSolver::IMPLICIT);
|
||||
arkode->Init(oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
ode_solver = arkode; break;
|
||||
}
|
||||
|
||||
// Initialize MFEM integrators, SUNDIALS integrators are initialized above
|
||||
if (ode_solver_type < 8) { ode_solver->Init(oper); }
|
||||
|
||||
// Since we want to update the diffusion coefficient after every time step,
|
||||
// we need to use the "one-step" mode of the SUNDIALS solvers.
|
||||
if (cvode) { cvode->SetStepMode(CV_ONE_STEP); }
|
||||
if (arkode) { arkode->SetStepMode(ARK_ONE_STEP); }
|
||||
|
||||
// 8. Perform time-integration (looping over the time iterations, ti, with a
|
||||
// time-step dt).
|
||||
cout << "Integrating the ODE ..." << endl;
|
||||
tic_toc.Clear();
|
||||
tic_toc.Start();
|
||||
ode_solver->Init(oper);
|
||||
double t = 0.0;
|
||||
|
||||
bool last_step = false;
|
||||
for (int ti = 1; !last_step; ti++)
|
||||
@@ -371,7 +370,7 @@ int main(int argc, char *argv[])
|
||||
ConductionOperator::ConductionOperator(FiniteElementSpace &f, double al,
|
||||
double kap, const Vector &u)
|
||||
: TimeDependentOperator(f.GetTrueVSize(), 0.0), fespace(f), M(NULL), K(NULL),
|
||||
T(NULL), current_dt(0.0), z(height)
|
||||
T(NULL), z(height)
|
||||
{
|
||||
const double rel_tol = 1e-8;
|
||||
|
||||
@@ -417,32 +416,14 @@ void ConductionOperator::ImplicitSolve(const double dt,
|
||||
// Solve the equation:
|
||||
// du_dt = M^{-1}*[-K(u + dt*du_dt)]
|
||||
// for du_dt
|
||||
if (!T)
|
||||
{
|
||||
T = Add(1.0, Mmat, dt, Kmat);
|
||||
current_dt = dt;
|
||||
T_solver.SetOperator(*T);
|
||||
}
|
||||
MFEM_VERIFY(dt == current_dt, ""); // SDIRK methods use the same dt
|
||||
if (T) { delete T; }
|
||||
T = Add(1.0, Mmat, dt, Kmat);
|
||||
T_solver.SetOperator(*T);
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg();
|
||||
T_solver.Mult(z, du_dt);
|
||||
}
|
||||
|
||||
void ConductionOperator::SundialsSolve(const double dt, Vector &b)
|
||||
{
|
||||
// Solve the system (M + dt K) y = M b. The result y replaces the input b.
|
||||
if (!T || dt != current_dt)
|
||||
{
|
||||
delete T;
|
||||
T = Add(1.0, Mmat, dt, Kmat);
|
||||
current_dt = dt;
|
||||
T_solver.SetOperator(*T);
|
||||
}
|
||||
Mmat.Mult(b, z);
|
||||
T_solver.Mult(z, b);
|
||||
}
|
||||
|
||||
void ConductionOperator::SetParameters(const Vector &u)
|
||||
{
|
||||
GridFunction u_alpha_gf(&fespace);
|
||||
@@ -460,8 +441,26 @@ void ConductionOperator::SetParameters(const Vector &u)
|
||||
K->AddDomainIntegrator(new DiffusionIntegrator(u_coeff));
|
||||
K->Assemble();
|
||||
K->FormSystemMatrix(ess_tdof_list, Kmat);
|
||||
delete T;
|
||||
T = NULL; // re-compute T on the next ImplicitSolve or SundialsSolve
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNImplicitSetup(const Vector &x,
|
||||
const Vector &fx, int jok, int *jcur,
|
||||
double gamma)
|
||||
{
|
||||
// Setup the ODE Jacobian T = M + gamma K.
|
||||
if (T) { delete T; }
|
||||
T = Add(1.0, Mmat, gamma, Kmat);
|
||||
T_solver.SetOperator(*T);
|
||||
*jcur = 1;
|
||||
return (0);
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNImplicitSolve(const Vector &b, Vector &x, double tol)
|
||||
{
|
||||
// Solve the system A x = z => (M - gamma K) x = M b.
|
||||
Mmat.Mult(b, z);
|
||||
T_solver.Mult(z, x);
|
||||
return (0);
|
||||
}
|
||||
|
||||
ConductionOperator::~ConductionOperator()
|
||||
@@ -471,46 +470,6 @@ ConductionOperator::~ConductionOperator()
|
||||
delete K;
|
||||
}
|
||||
|
||||
|
||||
int SundialsJacSolver::InitSystem(void *sundials_mem)
|
||||
{
|
||||
TimeDependentOperator *td_oper = GetTimeDependentOperator(sundials_mem);
|
||||
|
||||
// During development, we use dynamic_cast<> to ensure the setup is correct:
|
||||
oper = dynamic_cast<ConductionOperator*>(td_oper);
|
||||
MFEM_VERIFY(oper, "operator is not ConductionOperator");
|
||||
|
||||
// When the implementation is finalized, we can switch to static_cast<>:
|
||||
// oper = static_cast<ConductionOperator*>(td_oper);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
int SundialsJacSolver::SetupSystem(void *sundials_mem, int conv_fail,
|
||||
const Vector &y_pred, const Vector &f_pred,
|
||||
int &jac_cur, Vector &v_temp1,
|
||||
Vector &v_temp2, Vector &v_temp3)
|
||||
{
|
||||
jac_cur = 1;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
int SundialsJacSolver::SolveSystem(void *sundials_mem, Vector &b,
|
||||
const Vector &weight, const Vector &y_cur,
|
||||
const Vector &f_cur)
|
||||
{
|
||||
oper->SundialsSolve(GetTimeStep(sundials_mem), b);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
int SundialsJacSolver::FreeSystem(void *sundials_mem)
|
||||
{
|
||||
return 0;
|
||||
}
|
||||
|
||||
|
||||
double InitialTemperature(const Vector &x)
|
||||
{
|
||||
if (x.Norml2() < 0.5)
|
||||
|
||||
+116
-161
@@ -8,9 +8,9 @@
|
||||
// mpirun -np 4 ex16p -m ../../data/inline-tri.mesh
|
||||
// mpirun -np 4 ex16p -m ../../data/disc-nurbs.mesh -tf 2
|
||||
// mpirun -np 4 ex16p -s 12 -a 0.0 -k 1.0
|
||||
// mpirun -np 4 ex16p -s 1 -a 1.0 -k 0.0 -dt 4e-6 -tf 2e-2 -vs 50
|
||||
// mpirun -np 8 ex16p -s 2 -a 0.5 -k 0.5 -o 4 -dt 8e-6 -tf 2e-2 -vs 50
|
||||
// mpirun -np 4 ex16p -s 3 -dt 2.0e-4 -tf 4.0e-2
|
||||
// mpirun -np 4 ex16p -s 8 -a 1.0 -k 0.0 -dt 4e-6 -tf 2e-2 -vs 50
|
||||
// mpirun -np 8 ex16p -s 9 -a 0.5 -k 0.5 -o 4 -dt 8e-6 -tf 2e-2 -vs 50
|
||||
// mpirun -np 4 ex16p -s 10 -dt 2.0e-4 -tf 4.0e-2
|
||||
// mpirun -np 16 ex16p -m ../../data/fichera-q2.mesh
|
||||
// mpirun -np 16 ex16p -m ../../data/escher-p2.mesh
|
||||
// mpirun -np 8 ex16p -m ../../data/beam-tet.mesh -tf 10 -dt 0.1
|
||||
@@ -77,13 +77,19 @@ public:
|
||||
const Vector &u);
|
||||
|
||||
virtual void Mult(const Vector &u, Vector &du_dt) const;
|
||||
|
||||
/** Solve the Backward-Euler equation: k = f(u + dt*k, t), for the unknown k.
|
||||
This is the only requirement for high-order SDIRK implicit integration.*/
|
||||
virtual void ImplicitSolve(const double dt, const Vector &u, Vector &k);
|
||||
|
||||
/** Solve the system (M + dt K) y = M b. The result y replaces the input b.
|
||||
This method is used by the implicit SUNDIALS solvers. */
|
||||
void SundialsSolve(const double dt, Vector &b);
|
||||
/** Setup the system (M + dt K) x = M b. This method is used by the implicit
|
||||
SUNDIALS solvers. */
|
||||
virtual int SUNImplicitSetup(const Vector &x, const Vector &fx,
|
||||
int jok, int *jcur, double gamma);
|
||||
|
||||
/** Solve the system (M + dt K) x = M b. This method is used by the implicit
|
||||
SUNDIALS solvers. */
|
||||
virtual int SUNImplicitSolve(const Vector &b, Vector &x, double tol);
|
||||
|
||||
/// Update the diffusion BilinearForm K using the given true-dof vector `u`.
|
||||
void SetParameters(const Vector &u);
|
||||
@@ -91,33 +97,6 @@ public:
|
||||
virtual ~ConductionOperator();
|
||||
};
|
||||
|
||||
/// Custom Jacobian system solver for the SUNDIALS time integrators.
|
||||
/** For the ODE system represented by ConductionOperator
|
||||
|
||||
M du/dt = -K(u),
|
||||
|
||||
this class facilitates the solution of linear systems of the form
|
||||
|
||||
(M + γK) y = M b,
|
||||
|
||||
for given b, u (not used), and γ = GetTimeStep(). */
|
||||
class SundialsJacSolver : public SundialsODELinearSolver
|
||||
{
|
||||
private:
|
||||
ConductionOperator *oper;
|
||||
|
||||
public:
|
||||
SundialsJacSolver() : oper(NULL) { }
|
||||
|
||||
int InitSystem(void *sundials_mem);
|
||||
int SetupSystem(void *sundials_mem, int conv_fail,
|
||||
const Vector &y_pred, const Vector &f_pred, int &jac_cur,
|
||||
Vector &v_temp1, Vector &v_temp2, Vector &v_temp3);
|
||||
int SolveSystem(void *sundials_mem, Vector &b, const Vector &weight,
|
||||
const Vector &y_cur, const Vector &f_cur);
|
||||
int FreeSystem(void *sundials_mem);
|
||||
};
|
||||
|
||||
double InitialTemperature(const Vector &x);
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
@@ -133,7 +112,7 @@ int main(int argc, char *argv[])
|
||||
int ser_ref_levels = 2;
|
||||
int par_ref_levels = 1;
|
||||
int order = 2;
|
||||
int ode_solver_type = 11; // 11 = CVODE implicit
|
||||
int ode_solver_type = 9; // CVODE implicit BDF
|
||||
double t_final = 0.5;
|
||||
double dt = 1.0e-2;
|
||||
double alpha = 1.0e-2;
|
||||
@@ -158,12 +137,19 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
|
||||
"ODE solver:\n"
|
||||
"\t 1/11 - CVODE (explicit/implicit),\n"
|
||||
"\t 2/12 - ARKODE (default explicit/implicit),\n"
|
||||
"\t 3 - ARKODE (Fehlberg-6-4-5)\n"
|
||||
"\t 4 - Forward Euler, 5 - RK2, 6 - RK3 SSP, 7 - RK4,\n"
|
||||
"\t 8 - Backward Euler, 9 - SDIRK23, 10 - SDIRK33.");
|
||||
"ODE solver:\n\t"
|
||||
"1 - Forward Euler,\n\t"
|
||||
"2 - RK2,\n\t"
|
||||
"3 - RK3 SSP,\n\t"
|
||||
"4 - RK4,\n\t"
|
||||
"5 - Backward Euler,\n\t"
|
||||
"6 - SDIRK 2,\n\t"
|
||||
"7 - SDIRK 3,\n\t"
|
||||
"8 - CVODE (implicit Adams),\n\t"
|
||||
"9 - CVODE (implicit BDF),\n\t"
|
||||
"10 - ARKODE (default explicit),\n\t"
|
||||
"11 - ARKODE (explicit Fehlberg-6-4-5),\n\t"
|
||||
"12 - ARKODE (default impicit).");
|
||||
args.AddOption(&t_final, "-tf", "--t-final",
|
||||
"Final time; start time is 0.");
|
||||
args.AddOption(&dt, "-dt", "--time-step",
|
||||
@@ -193,67 +179,24 @@ int main(int argc, char *argv[])
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
// check for vaild ODE solver option
|
||||
if (ode_solver_type < 1 || ode_solver_type > 12)
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
}
|
||||
MPI_Finalize();
|
||||
return 1;
|
||||
}
|
||||
|
||||
// 3. Read the serial mesh from the given mesh file on all processors. We can
|
||||
// handle triangular, quadrilateral, tetrahedral and hexahedral meshes
|
||||
// with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 4. Define the ODE solver used for time integration. Several
|
||||
// SUNDIALS solvers are available, as well as included both
|
||||
// explicit and implicit MFEM ODE solvers.
|
||||
ODESolver *ode_solver = NULL;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKODESolver *arkode = NULL;
|
||||
SundialsJacSolver sun_solver; // Used by the implicit SUNDIALS ode solvers.
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
// SUNDIALS solvers
|
||||
case 1:
|
||||
cvode = new CVODESolver(MPI_COMM_WORLD, CV_ADAMS, CV_FUNCTIONAL);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
case 11:
|
||||
cvode = new CVODESolver(MPI_COMM_WORLD, CV_BDF, CV_NEWTON);
|
||||
cvode->SetLinearSolver(sun_solver);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
case 2:
|
||||
case 3:
|
||||
arkode = new ARKODESolver(MPI_COMM_WORLD, ARKODESolver::EXPLICIT);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 3) { arkode->SetERKTableNum(FEHLBERG_13_7_8); }
|
||||
ode_solver = arkode; break;
|
||||
case 12:
|
||||
arkode = new ARKODESolver(MPI_COMM_WORLD, ARKODESolver::IMPLICIT);
|
||||
arkode->SetLinearSolver(sun_solver);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
ode_solver = arkode; break;
|
||||
// Other MFEM explicit methods
|
||||
case 4: ode_solver = new ForwardEulerSolver; break;
|
||||
case 5: ode_solver = new RK2Solver(0.5); break; // midpoint method
|
||||
case 6: ode_solver = new RK3SSPSolver; break;
|
||||
case 7: ode_solver = new RK4Solver; break;
|
||||
// MFEM implicit L-stable methods
|
||||
case 8: ode_solver = new BackwardEulerSolver; break;
|
||||
case 9: ode_solver = new SDIRK23Solver(2); break;
|
||||
case 10: ode_solver = new SDIRK33Solver; break;
|
||||
default:
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
delete mesh;
|
||||
return 3;
|
||||
}
|
||||
|
||||
// Since we want to update the diffusion coefficient after every time step,
|
||||
// we need to use the "one-step" mode of the SUNDIALS solvers.
|
||||
if (cvode) { cvode->SetStepMode(CV_ONE_STEP); }
|
||||
if (arkode) { arkode->SetStepMode(ARK_ONE_STEP); }
|
||||
|
||||
// 5. Refine the mesh in serial to increase the resolution. In this example
|
||||
// 4. Refine the mesh in serial to increase the resolution. In this example
|
||||
// we do 'ser_ref_levels' of uniform refinement, where 'ser_ref_levels' is
|
||||
// a command-line parameter.
|
||||
for (int lev = 0; lev < ser_ref_levels; lev++)
|
||||
@@ -261,7 +204,7 @@ int main(int argc, char *argv[])
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 6. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
@@ -271,7 +214,7 @@ int main(int argc, char *argv[])
|
||||
pmesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 7. Define the vector finite element space representing the current and the
|
||||
// 6. Define the vector finite element space representing the current and the
|
||||
// initial temperature, u_ref.
|
||||
H1_FECollection fe_coll(order, dim);
|
||||
ParFiniteElementSpace fespace(pmesh, &fe_coll);
|
||||
@@ -284,14 +227,14 @@ int main(int argc, char *argv[])
|
||||
|
||||
ParGridFunction u_gf(&fespace);
|
||||
|
||||
// 8. Set the initial conditions for u. All boundaries are considered
|
||||
// 7. Set the initial conditions for u. All boundaries are considered
|
||||
// natural.
|
||||
FunctionCoefficient u_0(InitialTemperature);
|
||||
u_gf.ProjectCoefficient(u_0);
|
||||
Vector u;
|
||||
u_gf.GetTrueDofs(u);
|
||||
|
||||
// 9. Initialize the conduction operator and the VisIt visualization.
|
||||
// 8. Initialize the conduction operator and the VisIt visualization.
|
||||
ConductionOperator oper(fespace, alpha, kappa, u);
|
||||
|
||||
u_gf.SetFromTrueDofs(u);
|
||||
@@ -350,6 +293,60 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 9. Define the ODE solver used for time integration.
|
||||
double t = 0.0;
|
||||
ODESolver *ode_solver = NULL;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKStepSolver *arkode = NULL;
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
// MFEM explicit methods
|
||||
case 1: ode_solver = new ForwardEulerSolver; break;
|
||||
case 2: ode_solver = new RK2Solver(0.5); break; // midpoint method
|
||||
case 3: ode_solver = new RK3SSPSolver; break;
|
||||
case 4: ode_solver = new RK4Solver; break;
|
||||
// MFEM implicit L-stable methods
|
||||
case 5: ode_solver = new BackwardEulerSolver; break;
|
||||
case 6: ode_solver = new SDIRK23Solver(2); break;
|
||||
case 7: ode_solver = new SDIRK33Solver; break;
|
||||
// CVODE
|
||||
case 8:
|
||||
cvode = new CVODESolver(MPI_COMM_WORLD, CV_ADAMS);
|
||||
cvode->Init(oper);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
case 9:
|
||||
cvode = new CVODESolver(MPI_COMM_WORLD, CV_BDF);
|
||||
cvode->Init(oper);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
// ARKODE
|
||||
case 10:
|
||||
case 11:
|
||||
arkode = new ARKStepSolver(MPI_COMM_WORLD, ARKStepSolver::EXPLICIT);
|
||||
arkode->Init(oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 11) { arkode->SetERKTableNum(FEHLBERG_13_7_8); }
|
||||
ode_solver = arkode; break;
|
||||
case 12:
|
||||
arkode = new ARKStepSolver(MPI_COMM_WORLD, ARKStepSolver::IMPLICIT);
|
||||
arkode->Init(oper);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
ode_solver = arkode; break;
|
||||
}
|
||||
|
||||
// Initialize MFEM integrators, SUNDIALS integrators are initialized above
|
||||
if (ode_solver_type < 8) { ode_solver->Init(oper); }
|
||||
|
||||
// Since we want to update the diffusion coefficient after every time step,
|
||||
// we need to use the "one-step" mode of the SUNDIALS solvers.
|
||||
if (cvode) { cvode->SetStepMode(CV_ONE_STEP); }
|
||||
if (arkode) { arkode->SetStepMode(ARK_ONE_STEP); }
|
||||
|
||||
// 10. Perform time-integration (looping over the time iterations, ti, with a
|
||||
// time-step dt).
|
||||
if (myid == 0)
|
||||
@@ -358,8 +355,6 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
tic_toc.Clear();
|
||||
tic_toc.Start();
|
||||
ode_solver->Init(oper);
|
||||
double t = 0.0;
|
||||
|
||||
bool last_step = false;
|
||||
for (int ti = 1; !last_step; ti++)
|
||||
@@ -428,7 +423,7 @@ int main(int argc, char *argv[])
|
||||
ConductionOperator::ConductionOperator(ParFiniteElementSpace &f, double al,
|
||||
double kap, const Vector &u)
|
||||
: TimeDependentOperator(f.GetTrueVSize(), 0.0), fespace(f), M(NULL), K(NULL),
|
||||
T(NULL), current_dt(0.0),
|
||||
T(NULL),
|
||||
M_solver(f.GetComm()), T_solver(f.GetComm()), z(height)
|
||||
{
|
||||
const double rel_tol = 1e-8;
|
||||
@@ -476,30 +471,32 @@ void ConductionOperator::ImplicitSolve(const double dt,
|
||||
// Solve the equation:
|
||||
// du_dt = M^{-1}*[-K(u + dt*du_dt)]
|
||||
// for du_dt
|
||||
if (!T)
|
||||
{
|
||||
T = Add(1.0, Mmat, dt, Kmat);
|
||||
current_dt = dt;
|
||||
T_solver.SetOperator(*T);
|
||||
}
|
||||
MFEM_VERIFY(dt == current_dt, ""); // SDIRK methods use the same dt
|
||||
if (T) { delete T; }
|
||||
T = Add(1.0, Mmat, dt, Kmat);
|
||||
T_solver.SetOperator(*T);
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg();
|
||||
T_solver.Mult(z, du_dt);
|
||||
}
|
||||
|
||||
void ConductionOperator::SundialsSolve(const double dt, Vector &b)
|
||||
int ConductionOperator::SUNImplicitSetup(const Vector &x,
|
||||
const Vector &fx, int jok, int *jcur,
|
||||
double gamma)
|
||||
{
|
||||
// Solve the system (M + dt K) y = M b. The result y replaces the input b.
|
||||
if (!T || dt != current_dt)
|
||||
{
|
||||
delete T;
|
||||
T = Add(1.0, Mmat, dt, Kmat);
|
||||
current_dt = dt;
|
||||
T_solver.SetOperator(*T);
|
||||
}
|
||||
// Setup the ODE Jacobian T = M + gamma K.
|
||||
if (T) { delete T; }
|
||||
T = Add(1.0, Mmat, gamma, Kmat);
|
||||
T_solver.SetOperator(*T);
|
||||
*jcur = 1;
|
||||
return (0);
|
||||
}
|
||||
|
||||
int ConductionOperator::SUNImplicitSolve(const Vector &b, Vector &x, double tol)
|
||||
{
|
||||
// Solve the system A x = z => (M - gamma K) x = M b.
|
||||
Mmat.Mult(b, z);
|
||||
T_solver.Mult(z, b);
|
||||
T_solver.Mult(z, x);
|
||||
return (0);
|
||||
}
|
||||
|
||||
void ConductionOperator::SetParameters(const Vector &u)
|
||||
@@ -519,8 +516,6 @@ void ConductionOperator::SetParameters(const Vector &u)
|
||||
K->AddDomainIntegrator(new DiffusionIntegrator(u_coeff));
|
||||
K->Assemble(0); // keep sparsity pattern of M and K the same
|
||||
K->FormSystemMatrix(ess_tdof_list, Kmat);
|
||||
delete T;
|
||||
T = NULL; // re-compute T on the next ImplicitSolve or SundialsSolve
|
||||
}
|
||||
|
||||
ConductionOperator::~ConductionOperator()
|
||||
@@ -530,46 +525,6 @@ ConductionOperator::~ConductionOperator()
|
||||
delete K;
|
||||
}
|
||||
|
||||
|
||||
int SundialsJacSolver::InitSystem(void *sundials_mem)
|
||||
{
|
||||
TimeDependentOperator *td_oper = GetTimeDependentOperator(sundials_mem);
|
||||
|
||||
// During development, we use dynamic_cast<> to ensure the setup is correct:
|
||||
oper = dynamic_cast<ConductionOperator*>(td_oper);
|
||||
MFEM_VERIFY(oper, "operator is not ConductionOperator");
|
||||
|
||||
// When the implementation is finalized, we can switch to static_cast<>:
|
||||
// oper = static_cast<ConductionOperator*>(td_oper);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
int SundialsJacSolver::SetupSystem(void *sundials_mem, int conv_fail,
|
||||
const Vector &y_pred, const Vector &f_pred,
|
||||
int &jac_cur, Vector &v_temp1,
|
||||
Vector &v_temp2, Vector &v_temp3)
|
||||
{
|
||||
jac_cur = 1;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
int SundialsJacSolver::SolveSystem(void *sundials_mem, Vector &b,
|
||||
const Vector &weight, const Vector &y_cur,
|
||||
const Vector &f_cur)
|
||||
{
|
||||
oper->SundialsSolve(GetTimeStep(sundials_mem), b);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
int SundialsJacSolver::FreeSystem(void *sundials_mem)
|
||||
{
|
||||
return 0;
|
||||
}
|
||||
|
||||
|
||||
double InitialTemperature(const Vector &x)
|
||||
{
|
||||
if (x.Norml2() < 0.5)
|
||||
|
||||
+74
-63
@@ -4,14 +4,14 @@
|
||||
// Compile with: make ex9
|
||||
//
|
||||
// Sample runs:
|
||||
// ex9 -m ../../data/periodic-segment.mesh -p 0 -r 2 -s 11 -dt 0.005
|
||||
// ex9 -m ../../data/periodic-square.mesh -p 1 -r 2 -s 12 -dt 0.005 -tf 9
|
||||
// ex9 -m ../../data/periodic-hexagon.mesh -p 0 -r 2 -s 11 -dt 0.0018 -vs 25
|
||||
// ex9 -m ../../data/periodic-hexagon.mesh -p 0 -r 2 -s 13 -dt 0.01 -vs 15
|
||||
// ex9 -m ../../data/amr-quad.mesh -p 1 -r 2 -s 13 -dt 0.002 -tf 9
|
||||
// ex9 -m ../../data/star-q3.mesh -p 1 -r 2 -s 13 -dt 0.005 -tf 9
|
||||
// ex9 -m ../../data/disc-nurbs.mesh -p 1 -r 3 -s 11 -dt 0.005 -tf 9
|
||||
// ex9 -m ../../data/periodic-cube.mesh -p 0 -r 2 -s 12 -dt 0.02 -tf 8 -o 2
|
||||
// ex9 -m ../../data/periodic-segment.mesh -p 0 -r 2 -s 7 -dt 0.005
|
||||
// ex9 -m ../../data/periodic-square.mesh -p 1 -r 2 -s 8 -dt 0.005 -tf 9
|
||||
// ex9 -m ../../data/periodic-hexagon.mesh -p 0 -r 2 -s 7 -dt 0.0018 -vs 25
|
||||
// ex9 -m ../../data/periodic-hexagon.mesh -p 0 -r 2 -s 9 -dt 0.01 -vs 15
|
||||
// ex9 -m ../../data/amr-quad.mesh -p 1 -r 2 -s 9 -dt 0.002 -tf 9
|
||||
// ex9 -m ../../data/star-q3.mesh -p 1 -r 2 -s 9 -dt 0.005 -tf 9
|
||||
// ex9 -m ../../data/disc-nurbs.mesh -p 1 -r 3 -s 7 -dt 0.005 -tf 9
|
||||
// ex9 -m ../../data/periodic-cube.mesh -p 0 -r 2 -s 8 -dt 0.02 -tf 8 -o 2
|
||||
//
|
||||
// Description: This example code solves the time-dependent advection equation
|
||||
// du/dt + v.grad(u) = 0, where v is a given fluid velocity, and
|
||||
@@ -109,11 +109,15 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
|
||||
"ODE solver: 1 - Forward Euler,\n\t"
|
||||
" 2 - RK2 SSP, 3 - RK3 SSP, 4 - RK4, 6 - RK6,\n\t"
|
||||
" 11 - CVODE (adaptive order) explicit,\n\t"
|
||||
" 12 - ARKODE default (4th order) explicit,\n\t"
|
||||
" 13 - ARKODE RK8.");
|
||||
"ODE solver:\n\t"
|
||||
"1 - Forward Euler,\n\t"
|
||||
"2 - RK2 SSP,\n\t"
|
||||
"3 - RK3 SSP,\n\t"
|
||||
"4 - RK4,\n\t"
|
||||
"6 - RK6,\n\t"
|
||||
"7 - CVODE (adaptive order implicit Adams),\n\t"
|
||||
"8 - ARKODE default (4th order) explicit,\n\t"
|
||||
"9 - ARKODE RK8.");
|
||||
args.AddOption(&t_final, "-tf", "--t-final",
|
||||
"Final time; start time is 0.");
|
||||
args.AddOption(&dt, "-dt", "--time-step",
|
||||
@@ -135,65 +139,41 @@ int main(int argc, char *argv[])
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
// check for vaild ODE solver option
|
||||
if (ode_solver_type < 1 || ode_solver_type > 9)
|
||||
{
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
return 3;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
// 2. Read the mesh from the given mesh file. We can handle geometrically
|
||||
// periodic meshes in this code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
Mesh mesh(mesh_file, 1, 1);
|
||||
int dim = mesh.Dimension();
|
||||
|
||||
// 3. Define the ODE solver used for time integration. Several explicit
|
||||
// Runge-Kutta methods are available.
|
||||
ODESolver *ode_solver = NULL;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKODESolver *arkode = NULL;
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
case 1: ode_solver = new ForwardEulerSolver; break;
|
||||
case 2: ode_solver = new RK2Solver(1.0); break;
|
||||
case 3: ode_solver = new RK3SSPSolver; break;
|
||||
case 4: ode_solver = new RK4Solver; break;
|
||||
case 6: ode_solver = new RK6Solver; break;
|
||||
case 11:
|
||||
cvode = new CVODESolver(CV_ADAMS, CV_FUNCTIONAL);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
case 12:
|
||||
case 13:
|
||||
arkode = new ARKODESolver(ARKODESolver::EXPLICIT);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 13) { arkode->SetERKTableNum(FEHLBERG_13_7_8); }
|
||||
ode_solver = arkode; break;
|
||||
default:
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
delete mesh;
|
||||
return 3;
|
||||
}
|
||||
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 3. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement, where 'ref_levels' is a
|
||||
// command-line parameter. If the mesh is of NURBS type, we convert it to
|
||||
// a (piecewise-polynomial) high-order mesh.
|
||||
for (int lev = 0; lev < ref_levels; lev++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
mesh.UniformRefinement();
|
||||
}
|
||||
if (mesh->NURBSext)
|
||||
if (mesh.NURBSext)
|
||||
{
|
||||
mesh->SetCurvature(max(order, 1));
|
||||
mesh.SetCurvature(max(order, 1));
|
||||
}
|
||||
mesh->GetBoundingBox(bb_min, bb_max, max(order, 1));
|
||||
mesh.GetBoundingBox(bb_min, bb_max, max(order, 1));
|
||||
|
||||
// 5. Define the discontinuous DG finite element space of the given
|
||||
// 4. Define the discontinuous DG finite element space of the given
|
||||
// polynomial order on the refined mesh.
|
||||
DG_FECollection fec(order, dim);
|
||||
FiniteElementSpace fes(mesh, &fec);
|
||||
FiniteElementSpace fes(&mesh, &fec);
|
||||
|
||||
cout << "Number of unknowns: " << fes.GetVSize() << endl;
|
||||
|
||||
// 6. Set up and assemble the bilinear and linear forms corresponding to the
|
||||
// 5. Set up and assemble the bilinear and linear forms corresponding to the
|
||||
// DG discretization. The DGTraceIntegrator involves integrals over mesh
|
||||
// interior faces.
|
||||
VectorFunctionCoefficient velocity(dim, velocity_function);
|
||||
@@ -220,7 +200,7 @@ int main(int argc, char *argv[])
|
||||
k.Finalize(skip_zeros);
|
||||
b.Assemble();
|
||||
|
||||
// 7. Define the initial conditions, save the corresponding grid function to
|
||||
// 6. Define the initial conditions, save the corresponding grid function to
|
||||
// a file and (optionally) save data in the VisIt format and initialize
|
||||
// GLVis visualization.
|
||||
GridFunction u(&fes);
|
||||
@@ -229,7 +209,7 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
ofstream omesh("ex9.mesh");
|
||||
omesh.precision(precision);
|
||||
mesh->Print(omesh);
|
||||
mesh.Print(omesh);
|
||||
ofstream osol("ex9-init.gf");
|
||||
osol.precision(precision);
|
||||
u.Save(osol);
|
||||
@@ -243,14 +223,14 @@ int main(int argc, char *argv[])
|
||||
if (binary)
|
||||
{
|
||||
#ifdef MFEM_USE_SIDRE
|
||||
dc = new SidreDataCollection("Example9", mesh);
|
||||
dc = new SidreDataCollection("Example9", &mesh);
|
||||
#else
|
||||
MFEM_ABORT("Must build with MFEM_USE_SIDRE=YES for binary output.");
|
||||
#endif
|
||||
}
|
||||
else
|
||||
{
|
||||
dc = new VisItDataCollection("Example9", mesh);
|
||||
dc = new VisItDataCollection("Example9", &mesh);
|
||||
dc->SetPrecision(precision);
|
||||
}
|
||||
dc->RegisterField("solution", &u);
|
||||
@@ -275,7 +255,7 @@ int main(int argc, char *argv[])
|
||||
else
|
||||
{
|
||||
sout.precision(precision);
|
||||
sout << "solution\n" << *mesh << u;
|
||||
sout << "solution\n" << mesh << u;
|
||||
sout << "pause\n";
|
||||
sout << flush;
|
||||
cout << "GLVis visualization paused."
|
||||
@@ -283,15 +263,46 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 8. Define the time-dependent evolution operator describing the ODE
|
||||
// right-hand side, and perform time-integration (looping over the time
|
||||
// iterations, ti, with a time-step dt).
|
||||
// 7. Define the time-dependent evolution operator describing the ODE
|
||||
// right-hand side, and define the ODE solver used for time integration.
|
||||
FE_Evolution adv(m.SpMat(), k.SpMat(), b);
|
||||
|
||||
double t = 0.0;
|
||||
adv.SetTime(t);
|
||||
ode_solver->Init(adv);
|
||||
|
||||
// Create the time integrator
|
||||
ODESolver *ode_solver = NULL;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKStepSolver *arkode = NULL;
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
case 1: ode_solver = new ForwardEulerSolver; break;
|
||||
case 2: ode_solver = new RK2Solver(1.0); break;
|
||||
case 3: ode_solver = new RK3SSPSolver; break;
|
||||
case 4: ode_solver = new RK4Solver; break;
|
||||
case 6: ode_solver = new RK6Solver; break;
|
||||
case 7:
|
||||
cvode = new CVODESolver(CV_ADAMS);
|
||||
cvode->Init(adv);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
cvode->UseSundialsLinearSolver();
|
||||
ode_solver = cvode; break;
|
||||
case 8:
|
||||
case 9:
|
||||
arkode = new ARKStepSolver(ARKStepSolver::EXPLICIT);
|
||||
arkode->Init(adv);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 9) { arkode->SetERKTableNum(FEHLBERG_13_7_8); }
|
||||
ode_solver = arkode; break;
|
||||
}
|
||||
|
||||
// Initialize MFEM integrators, SUNDIALS integrators are initialized above
|
||||
if (ode_solver_type < 7) { ode_solver->Init(adv); }
|
||||
|
||||
// 8. Perform time-integration (looping over the time iterations, ti,
|
||||
// with a time-step dt).
|
||||
bool done = false;
|
||||
for (int ti = 0; !done; )
|
||||
{
|
||||
@@ -309,7 +320,7 @@ int main(int argc, char *argv[])
|
||||
|
||||
if (visualization)
|
||||
{
|
||||
sout << "solution\n" << *mesh << u << flush;
|
||||
sout << "solution\n" << mesh << u << flush;
|
||||
}
|
||||
|
||||
if (visit)
|
||||
|
||||
+67
-56
@@ -4,14 +4,14 @@
|
||||
// Compile with: make ex9p
|
||||
//
|
||||
// Sample runs:
|
||||
// mpirun -np 4 ex9p -m ../../data/periodic-segment.mesh -p 1 -rp 1 -s 11 -dt 0.0025
|
||||
// mpirun -np 4 ex9p -m ../../data/periodic-square.mesh -p 1 -rp 1 -s 12 -dt 0.0025 -tf 9
|
||||
// mpirun -np 4 ex9p -m ../../data/periodic-hexagon.mesh -p 0 -rp 1 -s 11 -dt 0.0009 -vs 25
|
||||
// mpirun -np 4 ex9p -m ../../data/periodic-hexagon.mesh -p 0 -rp 1 -s 13 -dt 0.005 -vs 15
|
||||
// mpirun -np 4 ex9p -m ../../data/amr-quad.mesh -p 1 -rp 1 -s 13 -dt 0.001 -tf 9
|
||||
// mpirun -np 4 ex9p -m ../../data/star-q3.mesh -p 1 -rp 1 -s 13 -dt 0.0025 -tf 9
|
||||
// mpirun -np 4 ex9p -m ../../data/disc-nurbs.mesh -p 1 -rp 2 -s 11 -dt 0.0025 -tf 9
|
||||
// mpirun -np 4 ex9p -m ../../data/periodic-cube.mesh -p 0 -rp 1 -s 12 -dt 0.01 -tf 8 -o 2
|
||||
// mpirun -np 4 ex9p -m ../../data/periodic-segment.mesh -p 1 -rp 1 -s 7 -dt 0.0025
|
||||
// mpirun -np 4 ex9p -m ../../data/periodic-square.mesh -p 1 -rp 1 -s 8 -dt 0.0025 -tf 9
|
||||
// mpirun -np 4 ex9p -m ../../data/periodic-hexagon.mesh -p 0 -rp 1 -s 7 -dt 0.0009 -vs 25
|
||||
// mpirun -np 4 ex9p -m ../../data/periodic-hexagon.mesh -p 0 -rp 1 -s 9 -dt 0.005 -vs 15
|
||||
// mpirun -np 4 ex9p -m ../../data/amr-quad.mesh -p 1 -rp 1 -s 9 -dt 0.001 -tf 9
|
||||
// mpirun -np 4 ex9p -m ../../data/star-q3.mesh -p 1 -rp 1 -s 9 -dt 0.0025 -tf 9
|
||||
// mpirun -np 4 ex9p -m ../../data/disc-nurbs.mesh -p 1 -rp 2 -s 7 -dt 0.0025 -tf 9
|
||||
// mpirun -np 4 ex9p -m ../../data/periodic-cube.mesh -p 0 -rp 1 -s 8 -dt 0.01 -tf 8 -o 2
|
||||
//
|
||||
// Description: This example code solves the time-dependent advection equation
|
||||
// du/dt + v.grad(u) = 0, where v is a given fluid velocity, and
|
||||
@@ -117,11 +117,15 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
|
||||
"ODE solver: 1 - Forward Euler,\n\t"
|
||||
" 2 - RK2 SSP, 3 - RK3 SSP, 4 - RK4, 6 - RK6,\n\t"
|
||||
" 11 - CVODE (adaptive order) explicit,\n\t"
|
||||
" 12 - ARKODE default (4th order) explicit,\n\t"
|
||||
" 13 - ARKODE RK8.");
|
||||
"ODE solver:\n\t"
|
||||
"1 - Forward Euler,\n\t"
|
||||
"2 - RK2 SSP,\n\t"
|
||||
"3 - RK3 SSP,\n\t"
|
||||
"4 - RK4,\n\t"
|
||||
"6 - RK6,\n\t"
|
||||
"7 - CVODE (adaptive order implicit Adams),\n\t"
|
||||
"8 - ARKODE default (4th order) explicit,\n\t"
|
||||
"9 - ARKODE RK8.");
|
||||
args.AddOption(&t_final, "-tf", "--t-final",
|
||||
"Final time; start time is 0.");
|
||||
args.AddOption(&dt, "-dt", "--time-step",
|
||||
@@ -151,47 +155,23 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
// check for vaild ODE solver option
|
||||
if (ode_solver_type < 1 || ode_solver_type > 9)
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
}
|
||||
MPI_Finalize();
|
||||
return 3;
|
||||
}
|
||||
|
||||
// 3. Read the serial mesh from the given mesh file on all processors. We can
|
||||
// handle geometrically periodic meshes in this code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 4. Define the ODE solver used for time integration. Several explicit
|
||||
// Runge-Kutta methods are available.
|
||||
ODESolver *ode_solver = NULL;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKODESolver *arkode = NULL;
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
case 1: ode_solver = new ForwardEulerSolver; break;
|
||||
case 2: ode_solver = new RK2Solver(1.0); break;
|
||||
case 3: ode_solver = new RK3SSPSolver; break;
|
||||
case 4: ode_solver = new RK4Solver; break;
|
||||
case 6: ode_solver = new RK6Solver; break;
|
||||
case 11:
|
||||
cvode = new CVODESolver(MPI_COMM_WORLD, CV_ADAMS, CV_FUNCTIONAL);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
ode_solver = cvode; break;
|
||||
case 12:
|
||||
case 13:
|
||||
arkode = new ARKODESolver(MPI_COMM_WORLD, ARKODESolver::EXPLICIT);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 13) { arkode->SetERKTableNum(FEHLBERG_13_7_8); }
|
||||
ode_solver = arkode; break;
|
||||
default:
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
}
|
||||
delete mesh;
|
||||
MPI_Finalize();
|
||||
return 3;
|
||||
}
|
||||
|
||||
// 5. Refine the mesh in serial to increase the resolution. In this example
|
||||
// 4. Refine the mesh in serial to increase the resolution. In this example
|
||||
// we do 'ser_ref_levels' of uniform refinement, where 'ser_ref_levels' is
|
||||
// a command-line parameter. If the mesh is of NURBS type, we convert it
|
||||
// to a (piecewise-polynomial) high-order mesh.
|
||||
@@ -205,7 +185,7 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
mesh->GetBoundingBox(bb_min, bb_max, max(order, 1));
|
||||
|
||||
// 6. Define the parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// 5. Define the parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
@@ -215,7 +195,7 @@ int main(int argc, char *argv[])
|
||||
pmesh->UniformRefinement();
|
||||
}
|
||||
|
||||
// 7. Define the parallel discontinuous DG finite element space on the
|
||||
// 6. Define the parallel discontinuous DG finite element space on the
|
||||
// parallel refined mesh of the given polynomial order.
|
||||
DG_FECollection fec(order, dim);
|
||||
ParFiniteElementSpace *fes = new ParFiniteElementSpace(pmesh, &fec);
|
||||
@@ -226,7 +206,7 @@ int main(int argc, char *argv[])
|
||||
cout << "Number of unknowns: " << global_vSize << endl;
|
||||
}
|
||||
|
||||
// 8. Set up and assemble the parallel bilinear and linear forms (and the
|
||||
// 7. Set up and assemble the parallel bilinear and linear forms (and the
|
||||
// parallel hypre matrices) corresponding to the DG discretization. The
|
||||
// DGTraceIntegrator involves integrals over mesh interior faces.
|
||||
VectorFunctionCoefficient velocity(dim, velocity_function);
|
||||
@@ -257,7 +237,7 @@ int main(int argc, char *argv[])
|
||||
HypreParMatrix *K = k->ParallelAssemble();
|
||||
HypreParVector *B = b->ParallelAssemble();
|
||||
|
||||
// 9. Define the initial conditions, save the corresponding grid function to
|
||||
// 8. Define the initial conditions, save the corresponding grid function to
|
||||
// a file and (optionally) save data in the VisIt format and initialize
|
||||
// GLVis visualization.
|
||||
ParGridFunction *u = new ParGridFunction(fes);
|
||||
@@ -330,15 +310,46 @@ int main(int argc, char *argv[])
|
||||
}
|
||||
}
|
||||
|
||||
// 10. Define the time-dependent evolution operator describing the ODE
|
||||
// right-hand side, and perform time-integration (looping over the time
|
||||
// iterations, ti, with a time-step dt).
|
||||
// 9. Define the time-dependent evolution operator describing the ODE
|
||||
// right-hand side, and define the ODE solver used for time integration.
|
||||
FE_Evolution adv(*M, *K, *B);
|
||||
|
||||
double t = 0.0;
|
||||
adv.SetTime(t);
|
||||
ode_solver->Init(adv);
|
||||
|
||||
// Create the time integrator
|
||||
ODESolver *ode_solver = NULL;
|
||||
CVODESolver *cvode = NULL;
|
||||
ARKStepSolver *arkode = NULL;
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
case 1: ode_solver = new ForwardEulerSolver; break;
|
||||
case 2: ode_solver = new RK2Solver(1.0); break;
|
||||
case 3: ode_solver = new RK3SSPSolver; break;
|
||||
case 4: ode_solver = new RK4Solver; break;
|
||||
case 6: ode_solver = new RK6Solver; break;
|
||||
case 7:
|
||||
cvode = new CVODESolver(MPI_COMM_WORLD, CV_ADAMS);
|
||||
cvode->Init(adv);
|
||||
cvode->SetSStolerances(reltol, abstol);
|
||||
cvode->SetMaxStep(dt);
|
||||
cvode->UseSundialsLinearSolver();
|
||||
ode_solver = cvode; break;
|
||||
case 8:
|
||||
case 9:
|
||||
arkode = new ARKStepSolver(MPI_COMM_WORLD, ARKStepSolver::EXPLICIT);
|
||||
arkode->Init(adv);
|
||||
arkode->SetSStolerances(reltol, abstol);
|
||||
arkode->SetMaxStep(dt);
|
||||
if (ode_solver_type == 9) { arkode->SetERKTableNum(FEHLBERG_13_7_8); }
|
||||
ode_solver = arkode; break;
|
||||
}
|
||||
|
||||
// Initialize MFEM integrators, SUNDIALS integrators are initialized above
|
||||
if (ode_solver_type < 7) { ode_solver->Init(adv); }
|
||||
|
||||
// 10. Perform time-integration (looping over the time iterations, ti,
|
||||
// with a time-step dt).
|
||||
bool done = false;
|
||||
for (int ti = 0; !done; )
|
||||
{
|
||||
|
||||
@@ -60,15 +60,15 @@ PARALLEL_NAME := Parallel SUNDIALS example
|
||||
@$(call mfem-test,$<,, $(SERIAL_NAME))
|
||||
|
||||
# Testing: Specific execution options:
|
||||
# Example 9: test explicit CVODE time stepping
|
||||
EX9_COMMON_ARGS := -m ../../data/periodic-hexagon.mesh -p 0 -s 11
|
||||
# Example 9: test CVODE with CV_ADAMS (non-stiff implicit) time stepping
|
||||
EX9_COMMON_ARGS := -m ../../data/periodic-hexagon.mesh -p 0 -s 7
|
||||
EX9_ARGS := $(EX9_COMMON_ARGS) -r 2 -dt 0.0018 -vs 25
|
||||
EX9P_ARGS := $(EX9_COMMON_ARGS) -rp 1 -dt 0.0009 -vs 50
|
||||
ex9-test-seq: ex9
|
||||
@$(call mfem-test,$<,, $(SERIAL_NAME),$(EX9_ARGS))
|
||||
ex9p-test-par: ex9p
|
||||
@$(call mfem-test,$<, $(RUN_MPI), $(PARALLEL_NAME),$(EX9P_ARGS))
|
||||
# Example 10: test implicit CVODE time stepping
|
||||
# Example 10: test CVODE with CV_BDF (stiff implicit) time stepping
|
||||
EX10_COMMON_ARGS := -m ../../data/beam-quad.mesh -o 2 -s 5 -dt 0.15 -tf 6 -vs 10
|
||||
EX10_ARGS := $(EX10_COMMON_ARGS) -r 2
|
||||
EX10P_ARGS := $(EX10_COMMON_ARGS) -rp 1
|
||||
|
||||
+2
-2
@@ -13,7 +13,8 @@ set(SRCS
|
||||
bilinearform.cpp
|
||||
bilinearform_ext.cpp
|
||||
bilininteg.cpp
|
||||
bilininteg_ext.cpp
|
||||
bilininteg_diffusion.cpp
|
||||
bilininteg_mass.cpp
|
||||
coefficient.cpp
|
||||
datacollection.cpp
|
||||
eltrans.cpp
|
||||
@@ -37,7 +38,6 @@ set(HDRS
|
||||
bilinearform.hpp
|
||||
bilinearform_ext.hpp
|
||||
bilininteg.hpp
|
||||
bilininteg_ext.hpp
|
||||
coefficient.hpp
|
||||
datacollection.hpp
|
||||
eltrans.hpp
|
||||
|
||||
+272
-55
@@ -55,7 +55,7 @@ void BilinearForm::AllocMat()
|
||||
|
||||
int *I = dof_dof.GetI();
|
||||
int *J = dof_dof.GetJ();
|
||||
double *data = mfem::New<double>(I[height]);
|
||||
double *data = new double[I[height]];
|
||||
|
||||
mat = new SparseMatrix(I, J, data, height, height, true, true, true);
|
||||
*mat = 0.0;
|
||||
@@ -122,11 +122,7 @@ void BilinearForm::SetAssemblyLevel(AssemblyLevel assembly_level)
|
||||
switch (assembly)
|
||||
{
|
||||
case AssemblyLevel::FULL:
|
||||
if (Device::IsEnabled())
|
||||
{
|
||||
mfem_error("Full assembly not supported yet in device mode!");
|
||||
// ext = new FABilinearFormExtension(this);
|
||||
}
|
||||
// ext = new FABilinearFormExtension(this);
|
||||
// Use the original BilinearForm implementation for now
|
||||
break;
|
||||
case AssemblyLevel::ELEMENT:
|
||||
@@ -298,6 +294,33 @@ void BilinearForm::ComputeElementMatrix(int i, DenseMatrix &elmat)
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::ComputeBdrElementMatrix(int i, DenseMatrix &elmat)
|
||||
{
|
||||
if (bbfi.Size())
|
||||
{
|
||||
const FiniteElement &be = *fes->GetBE(i);
|
||||
ElementTransformation *eltrans = fes->GetBdrElementTransformation(i);
|
||||
bbfi[0]->AssembleElementMatrix(be, *eltrans, elmat);
|
||||
for (int k = 1; k < bbfi.Size(); k++)
|
||||
{
|
||||
bbfi[k]->AssembleElementMatrix(be, *eltrans, elemmat);
|
||||
elmat += elemmat;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
fes->GetBdrElementVDofs(i, vdofs);
|
||||
elmat.SetSize(vdofs.Size());
|
||||
elmat = 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::AssembleElementMatrix(
|
||||
int i, const DenseMatrix &elmat, int skip_zeros)
|
||||
{
|
||||
AssembleElementMatrix(i, elmat, vdofs, skip_zeros);
|
||||
}
|
||||
|
||||
void BilinearForm::AssembleElementMatrix(
|
||||
int i, const DenseMatrix &elmat, Array<int> &vdofs, int skip_zeros)
|
||||
{
|
||||
@@ -320,6 +343,12 @@ void BilinearForm::AssembleElementMatrix(
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::AssembleBdrElementMatrix(
|
||||
int i, const DenseMatrix &elmat, int skip_zeros)
|
||||
{
|
||||
AssembleBdrElementMatrix(i, elmat, vdofs, skip_zeros);
|
||||
}
|
||||
|
||||
void BilinearForm::AssembleBdrElementMatrix(
|
||||
int i, const DenseMatrix &elmat, Array<int> &vdofs, int skip_zeros)
|
||||
{
|
||||
@@ -344,11 +373,6 @@ void BilinearForm::AssembleBdrElementMatrix(
|
||||
|
||||
void BilinearForm::Assemble(int skip_zeros)
|
||||
{
|
||||
if (Device::IsEnabled() && (assembly != AssemblyLevel::PARTIAL))
|
||||
{
|
||||
mfem_error("Chosen assembly level not supported yet in device mode!");
|
||||
}
|
||||
|
||||
if (ext)
|
||||
{
|
||||
ext->Assemble();
|
||||
@@ -592,10 +616,6 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
|
||||
|
||||
if (ext)
|
||||
{
|
||||
if (P != NULL && assembly != AssemblyLevel::FULL && Device::IsEnabled())
|
||||
{
|
||||
P->BuildTranspose();
|
||||
}
|
||||
ext->FormLinearSystem(ess_tdof_list, x, b, A, X, B, copy_interior);
|
||||
return;
|
||||
}
|
||||
@@ -625,8 +645,8 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
|
||||
{
|
||||
// A, X and B point to the same data as mat, x and b
|
||||
EliminateVDofsInRHS(ess_tdof_list, x, b);
|
||||
X.NewDataAndSize(x.GetData(), x.Size());
|
||||
B.NewDataAndSize(b.GetData(), b.Size());
|
||||
X.NewMemoryAndSize(x.GetMemory(), x.Size(), false);
|
||||
B.NewMemoryAndSize(b.GetMemory(), b.Size(), false);
|
||||
if (!copy_interior) { X.SetSubVectorComplement(ess_tdof_list, 0.0); }
|
||||
}
|
||||
}
|
||||
@@ -727,6 +747,10 @@ void BilinearForm::RecoverFEMSolution(const Vector &X,
|
||||
else
|
||||
{
|
||||
// X and x point to the same data
|
||||
|
||||
// If the validity flags of X's Memory were changed (e.g. if it was
|
||||
// moved to device memory) then we need to tell x about that.
|
||||
x.SyncMemory(X);
|
||||
}
|
||||
}
|
||||
else // non-conforming space
|
||||
@@ -1025,9 +1049,13 @@ MixedBilinearForm::MixedBilinearForm (FiniteElementSpace *tr_fes,
|
||||
extern_bfs = 1;
|
||||
|
||||
// Copy the pointers to the integrators
|
||||
dom = mbf->dom;
|
||||
bdr = mbf->bdr;
|
||||
skt = mbf->skt;
|
||||
dbfi = mbf->dbfi;
|
||||
bbfi = mbf->bbfi;
|
||||
tfbfi = mbf->tfbfi;
|
||||
btfbfi = mbf->btfbfi;
|
||||
|
||||
bbfi_marker = mbf->bbfi_marker;
|
||||
btfbfi_marker = mbf->btfbfi_marker;
|
||||
}
|
||||
|
||||
double & MixedBilinearForm::Elem (int i, int j)
|
||||
@@ -1081,22 +1109,42 @@ void MixedBilinearForm::GetBlocks(Array2D<SparseMatrix *> &blocks) const
|
||||
|
||||
void MixedBilinearForm::AddDomainIntegrator (BilinearFormIntegrator * bfi)
|
||||
{
|
||||
dom.Append (bfi);
|
||||
dbfi.Append (bfi);
|
||||
}
|
||||
|
||||
void MixedBilinearForm::AddBoundaryIntegrator (BilinearFormIntegrator * bfi)
|
||||
{
|
||||
bdr.Append (bfi);
|
||||
bbfi.Append (bfi);
|
||||
bbfi_marker.Append(NULL); // NULL marker means apply everywhere
|
||||
}
|
||||
|
||||
void MixedBilinearForm::AddBoundaryIntegrator (BilinearFormIntegrator * bfi,
|
||||
Array<int> &bdr_marker)
|
||||
{
|
||||
bbfi.Append (bfi);
|
||||
bbfi_marker.Append(&bdr_marker);
|
||||
}
|
||||
|
||||
void MixedBilinearForm::AddTraceFaceIntegrator (BilinearFormIntegrator * bfi)
|
||||
{
|
||||
skt.Append (bfi);
|
||||
tfbfi.Append (bfi);
|
||||
}
|
||||
|
||||
void MixedBilinearForm::AddBdrTraceFaceIntegrator(BilinearFormIntegrator *bfi)
|
||||
{
|
||||
btfbfi.Append(bfi);
|
||||
btfbfi_marker.Append(NULL); // NULL marker means apply everywhere
|
||||
}
|
||||
|
||||
void MixedBilinearForm::AddBdrTraceFaceIntegrator(BilinearFormIntegrator *bfi,
|
||||
Array<int> &bdr_marker)
|
||||
{
|
||||
btfbfi.Append(bfi);
|
||||
btfbfi_marker.Append(&bdr_marker);
|
||||
}
|
||||
|
||||
void MixedBilinearForm::Assemble (int skip_zeros)
|
||||
{
|
||||
int i, k;
|
||||
Array<int> tr_vdofs, te_vdofs;
|
||||
ElementTransformation *eltrans;
|
||||
DenseMatrix elemmat;
|
||||
@@ -1108,48 +1156,75 @@ void MixedBilinearForm::Assemble (int skip_zeros)
|
||||
mat = new SparseMatrix(height, width);
|
||||
}
|
||||
|
||||
if (dom.Size())
|
||||
if (dbfi.Size())
|
||||
{
|
||||
for (i = 0; i < test_fes -> GetNE(); i++)
|
||||
for (int i = 0; i < test_fes -> GetNE(); i++)
|
||||
{
|
||||
trial_fes -> GetElementVDofs (i, tr_vdofs);
|
||||
test_fes -> GetElementVDofs (i, te_vdofs);
|
||||
eltrans = test_fes -> GetElementTransformation (i);
|
||||
for (k = 0; k < dom.Size(); k++)
|
||||
for (int k = 0; k < dbfi.Size(); k++)
|
||||
{
|
||||
dom[k] -> AssembleElementMatrix2 (*trial_fes -> GetFE(i),
|
||||
*test_fes -> GetFE(i),
|
||||
*eltrans, elemmat);
|
||||
dbfi[k] -> AssembleElementMatrix2 (*trial_fes -> GetFE(i),
|
||||
*test_fes -> GetFE(i),
|
||||
*eltrans, elemmat);
|
||||
mat -> AddSubMatrix (te_vdofs, tr_vdofs, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (bdr.Size())
|
||||
if (bbfi.Size())
|
||||
{
|
||||
for (i = 0; i < test_fes -> GetNBE(); i++)
|
||||
// Which boundary attributes need to be processed?
|
||||
Array<int> bdr_attr_marker(mesh->bdr_attributes.Size() ?
|
||||
mesh->bdr_attributes.Max() : 0);
|
||||
bdr_attr_marker = 0;
|
||||
for (int k = 0; k < bbfi.Size(); k++)
|
||||
{
|
||||
if (bbfi_marker[k] == NULL)
|
||||
{
|
||||
bdr_attr_marker = 1;
|
||||
break;
|
||||
}
|
||||
Array<int> &bdr_marker = *bbfi_marker[k];
|
||||
MFEM_ASSERT(bdr_marker.Size() == bdr_attr_marker.Size(),
|
||||
"invalid boundary marker for boundary integrator #"
|
||||
<< k << ", counting from zero");
|
||||
for (int i = 0; i < bdr_attr_marker.Size(); i++)
|
||||
{
|
||||
bdr_attr_marker[i] |= bdr_marker[i];
|
||||
}
|
||||
}
|
||||
|
||||
for (int i = 0; i < test_fes -> GetNBE(); i++)
|
||||
{
|
||||
const int bdr_attr = mesh->GetBdrAttribute(i);
|
||||
if (bdr_attr_marker[bdr_attr-1] == 0) { continue; }
|
||||
|
||||
trial_fes -> GetBdrElementVDofs (i, tr_vdofs);
|
||||
test_fes -> GetBdrElementVDofs (i, te_vdofs);
|
||||
eltrans = test_fes -> GetBdrElementTransformation (i);
|
||||
for (k = 0; k < bdr.Size(); k++)
|
||||
for (int k = 0; k < bbfi.Size(); k++)
|
||||
{
|
||||
bdr[k] -> AssembleElementMatrix2 (*trial_fes -> GetBE(i),
|
||||
*test_fes -> GetBE(i),
|
||||
*eltrans, elemmat);
|
||||
if (bbfi_marker[k] &&
|
||||
(*bbfi_marker[k])[bdr_attr-1] == 0) { continue; }
|
||||
|
||||
bbfi[k] -> AssembleElementMatrix2 (*trial_fes -> GetBE(i),
|
||||
*test_fes -> GetBE(i),
|
||||
*eltrans, elemmat);
|
||||
mat -> AddSubMatrix (te_vdofs, tr_vdofs, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (skt.Size())
|
||||
if (tfbfi.Size())
|
||||
{
|
||||
FaceElementTransformations *ftr;
|
||||
Array<int> te_vdofs2;
|
||||
const FiniteElement *trial_face_fe, *test_fe1, *test_fe2;
|
||||
|
||||
int nfaces = mesh->GetNumFaces();
|
||||
for (i = 0; i < nfaces; i++)
|
||||
for (int i = 0; i < nfaces; i++)
|
||||
{
|
||||
ftr = mesh->GetFaceElementTransformations(i);
|
||||
trial_fes->GetFaceVDofs(i, tr_vdofs);
|
||||
@@ -1169,14 +1244,70 @@ void MixedBilinearForm::Assemble (int skip_zeros)
|
||||
// want to actually make a fake element.
|
||||
test_fe2 = test_fe1;
|
||||
}
|
||||
for (int k = 0; k < skt.Size(); k++)
|
||||
for (int k = 0; k < tfbfi.Size(); k++)
|
||||
{
|
||||
skt[k]->AssembleFaceMatrix(*trial_face_fe, *test_fe1, *test_fe2,
|
||||
*ftr, elemmat);
|
||||
tfbfi[k]->AssembleFaceMatrix(*trial_face_fe, *test_fe1, *test_fe2,
|
||||
*ftr, elemmat);
|
||||
mat->AddSubMatrix(te_vdofs, tr_vdofs, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (btfbfi.Size())
|
||||
{
|
||||
FaceElementTransformations *ftr;
|
||||
Array<int> te_vdofs2;
|
||||
const FiniteElement *trial_face_fe, *test_fe1, *test_fe2;
|
||||
|
||||
// Which boundary attributes need to be processed?
|
||||
Array<int> bdr_attr_marker(mesh->bdr_attributes.Size() ?
|
||||
mesh->bdr_attributes.Max() : 0);
|
||||
bdr_attr_marker = 0;
|
||||
for (int k = 0; k < btfbfi.Size(); k++)
|
||||
{
|
||||
if (btfbfi_marker[k] == NULL)
|
||||
{
|
||||
bdr_attr_marker = 1;
|
||||
break;
|
||||
}
|
||||
Array<int> &bdr_marker = *btfbfi_marker[k];
|
||||
MFEM_ASSERT(bdr_marker.Size() == bdr_attr_marker.Size(),
|
||||
"invalid boundary marker for boundary trace face integrator #"
|
||||
<< k << ", counting from zero");
|
||||
for (int i = 0; i < bdr_attr_marker.Size(); i++)
|
||||
{
|
||||
bdr_attr_marker[i] |= bdr_marker[i];
|
||||
}
|
||||
}
|
||||
|
||||
for (int i = 0; i < trial_fes -> GetNBE(); i++)
|
||||
{
|
||||
const int bdr_attr = mesh->GetBdrAttribute(i);
|
||||
if (bdr_attr_marker[bdr_attr-1] == 0) { continue; }
|
||||
|
||||
ftr = mesh->GetBdrFaceTransformations(i);
|
||||
if (ftr)
|
||||
{
|
||||
trial_fes->GetFaceVDofs(i, tr_vdofs);
|
||||
test_fes->GetElementVDofs(ftr->Elem1No, te_vdofs);
|
||||
trial_face_fe = trial_fes->GetFaceElement(i);
|
||||
test_fe1 = test_fes->GetFE(ftr->Elem1No);
|
||||
// The test_fe2 object is really a dummy and not used on the
|
||||
// boundaries, but we can't dereference a NULL pointer, and we don't
|
||||
// want to actually make a fake element.
|
||||
test_fe2 = test_fe1;
|
||||
for (int k = 0; k < btfbfi.Size(); k++)
|
||||
{
|
||||
if (btfbfi_marker[k] &&
|
||||
(*btfbfi_marker[k])[bdr_attr-1] == 0) { continue; }
|
||||
|
||||
btfbfi[k]->AssembleFaceMatrix(*trial_face_fe, *test_fe1, *test_fe2,
|
||||
*ftr, elemmat);
|
||||
mat->AddSubMatrix(te_vdofs, tr_vdofs, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void MixedBilinearForm::ConformingAssemble()
|
||||
@@ -1205,8 +1336,93 @@ void MixedBilinearForm::ConformingAssemble()
|
||||
width = mat->Width();
|
||||
}
|
||||
|
||||
|
||||
void MixedBilinearForm::ComputeElementMatrix(int i, DenseMatrix &elmat)
|
||||
{
|
||||
if (dbfi.Size())
|
||||
{
|
||||
const FiniteElement &trial_fe = *trial_fes->GetFE(i);
|
||||
const FiniteElement &test_fe = *test_fes->GetFE(i);
|
||||
ElementTransformation *eltrans = test_fes->GetElementTransformation(i);
|
||||
dbfi[0]->AssembleElementMatrix2(trial_fe, test_fe, *eltrans, elmat);
|
||||
for (int k = 1; k < dbfi.Size(); k++)
|
||||
{
|
||||
dbfi[k]->AssembleElementMatrix2(trial_fe, test_fe, *eltrans, elemmat);
|
||||
elmat += elemmat;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
trial_fes->GetElementVDofs(i, trial_vdofs);
|
||||
test_fes->GetElementVDofs(i, test_vdofs);
|
||||
elmat.SetSize(test_vdofs.Size(), trial_vdofs.Size());
|
||||
elmat = 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
void MixedBilinearForm::ComputeBdrElementMatrix(int i, DenseMatrix &elmat)
|
||||
{
|
||||
if (bbfi.Size())
|
||||
{
|
||||
const FiniteElement &trial_be = *trial_fes->GetBE(i);
|
||||
const FiniteElement &test_be = *test_fes->GetBE(i);
|
||||
ElementTransformation *eltrans = test_fes->GetBdrElementTransformation(i);
|
||||
bbfi[0]->AssembleElementMatrix2(trial_be, test_be, *eltrans, elmat);
|
||||
for (int k = 1; k < bbfi.Size(); k++)
|
||||
{
|
||||
bbfi[k]->AssembleElementMatrix2(trial_be, test_be, *eltrans, elemmat);
|
||||
elmat += elemmat;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
trial_fes->GetBdrElementVDofs(i, trial_vdofs);
|
||||
test_fes->GetBdrElementVDofs(i, test_vdofs);
|
||||
elmat.SetSize(test_vdofs.Size(), trial_vdofs.Size());
|
||||
elmat = 0.0;
|
||||
}
|
||||
}
|
||||
|
||||
void MixedBilinearForm::AssembleElementMatrix(
|
||||
int i, const DenseMatrix &elmat, int skip_zeros)
|
||||
{
|
||||
AssembleElementMatrix(i, elmat, trial_vdofs, test_vdofs, skip_zeros);
|
||||
}
|
||||
|
||||
void MixedBilinearForm::AssembleElementMatrix(
|
||||
int i, const DenseMatrix &elmat, Array<int> &trial_vdofs,
|
||||
Array<int> &test_vdofs, int skip_zeros)
|
||||
{
|
||||
trial_fes->GetElementVDofs(i, trial_vdofs);
|
||||
test_fes->GetElementVDofs(i, test_vdofs);
|
||||
if (mat == NULL)
|
||||
{
|
||||
mat = new SparseMatrix(height, width);
|
||||
}
|
||||
mat->AddSubMatrix(test_vdofs, trial_vdofs, elmat, skip_zeros);
|
||||
}
|
||||
|
||||
void MixedBilinearForm::AssembleBdrElementMatrix(
|
||||
int i, const DenseMatrix &elmat, int skip_zeros)
|
||||
{
|
||||
AssembleBdrElementMatrix(i, elmat, trial_vdofs, test_vdofs, skip_zeros);
|
||||
}
|
||||
|
||||
void MixedBilinearForm::AssembleBdrElementMatrix(
|
||||
int i, const DenseMatrix &elmat, Array<int> &trial_vdofs,
|
||||
Array<int> &test_vdofs, int skip_zeros)
|
||||
{
|
||||
trial_fes->GetBdrElementVDofs(i, trial_vdofs);
|
||||
test_fes->GetBdrElementVDofs(i, test_vdofs);
|
||||
if (mat == NULL)
|
||||
{
|
||||
mat = new SparseMatrix(height, width);
|
||||
}
|
||||
mat->AddSubMatrix(test_vdofs, trial_vdofs, elmat, skip_zeros);
|
||||
}
|
||||
|
||||
void MixedBilinearForm::EliminateTrialDofs (
|
||||
Array<int> &bdr_attr_is_ess, const Vector &sol, Vector &rhs )
|
||||
const Array<int> &bdr_attr_is_ess, const Vector &sol, Vector &rhs )
|
||||
{
|
||||
int i, j, k;
|
||||
Array<int> tr_vdofs, cols_marker (trial_fes -> GetVSize());
|
||||
@@ -1229,12 +1445,12 @@ void MixedBilinearForm::EliminateTrialDofs (
|
||||
}
|
||||
|
||||
void MixedBilinearForm::EliminateEssentialBCFromTrialDofs (
|
||||
Array<int> &marked_vdofs, const Vector &sol, Vector &rhs)
|
||||
const Array<int> &marked_vdofs, const Vector &sol, Vector &rhs)
|
||||
{
|
||||
mat -> EliminateCols (marked_vdofs, &sol, &rhs);
|
||||
}
|
||||
|
||||
void MixedBilinearForm::EliminateTestDofs (Array<int> &bdr_attr_is_ess)
|
||||
void MixedBilinearForm::EliminateTestDofs (const Array<int> &bdr_attr_is_ess)
|
||||
{
|
||||
int i, j, k;
|
||||
Array<int> te_vdofs;
|
||||
@@ -1268,9 +1484,10 @@ MixedBilinearForm::~MixedBilinearForm()
|
||||
if (!extern_bfs)
|
||||
{
|
||||
int i;
|
||||
for (i = 0; i < dom.Size(); i++) { delete dom[i]; }
|
||||
for (i = 0; i < bdr.Size(); i++) { delete bdr[i]; }
|
||||
for (i = 0; i < skt.Size(); i++) { delete skt[i]; }
|
||||
for (i = 0; i < dbfi.Size(); i++) { delete dbfi[i]; }
|
||||
for (i = 0; i < bbfi.Size(); i++) { delete bbfi[i]; }
|
||||
for (i = 0; i < tfbfi.Size(); i++) { delete tfbfi[i]; }
|
||||
for (i = 0; i < btfbfi.Size(); i++) { delete btfbfi[i]; }
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1287,7 +1504,7 @@ void DiscreteLinearOperator::Assemble(int skip_zeros)
|
||||
mat = new SparseMatrix(height, width);
|
||||
}
|
||||
|
||||
if (dom.Size() > 0)
|
||||
if (dbfi.Size() > 0)
|
||||
{
|
||||
for (int i = 0; i < test_fes->GetNE(); i++)
|
||||
{
|
||||
@@ -1297,17 +1514,17 @@ void DiscreteLinearOperator::Assemble(int skip_zeros)
|
||||
dom_fe = trial_fes->GetFE(i);
|
||||
ran_fe = test_fes->GetFE(i);
|
||||
|
||||
dom[0]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T, totelmat);
|
||||
for (int j = 1; j < dom.Size(); j++)
|
||||
dbfi[0]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T, totelmat);
|
||||
for (int j = 1; j < dbfi.Size(); j++)
|
||||
{
|
||||
dom[j]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T, elmat);
|
||||
dbfi[j]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T, elmat);
|
||||
totelmat += elmat;
|
||||
}
|
||||
mat->SetSubMatrix(ran_vdofs, dom_vdofs, totelmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
|
||||
if (skt.Size())
|
||||
if (tfbfi.Size())
|
||||
{
|
||||
const int nfaces = test_fes->GetMesh()->GetNumFaces();
|
||||
for (int i = 0; i < nfaces; i++)
|
||||
@@ -1318,10 +1535,10 @@ void DiscreteLinearOperator::Assemble(int skip_zeros)
|
||||
dom_fe = trial_fes->GetFaceElement(i);
|
||||
ran_fe = test_fes->GetFaceElement(i);
|
||||
|
||||
skt[0]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T, totelmat);
|
||||
for (int j = 1; j < skt.Size(); j++)
|
||||
tfbfi[0]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T, totelmat);
|
||||
for (int j = 1; j < tfbfi.Size(); j++)
|
||||
{
|
||||
skt[j]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T, elmat);
|
||||
tfbfi[j]->AssembleElementMatrix2(*dom_fe, *ran_fe, *T, elmat);
|
||||
totelmat += elmat;
|
||||
}
|
||||
mat->SetSubMatrix(ran_vdofs, dom_vdofs, totelmat, skip_zeros);
|
||||
|
||||
+130
-12
@@ -413,9 +413,49 @@ public:
|
||||
void FreeElementMatrices()
|
||||
{ delete element_matrices; element_matrices = NULL; }
|
||||
|
||||
/// Compute the element matrix of the given element
|
||||
/** The element matrix is computed by calling the domain integrators
|
||||
or the one stored internally by a prior call of ComputeElementMatrices()
|
||||
is returned when available.
|
||||
*/
|
||||
void ComputeElementMatrix(int i, DenseMatrix &elmat);
|
||||
|
||||
/// Compute the boundary element matrix of the given boundary element
|
||||
void ComputeBdrElementMatrix(int i, DenseMatrix &elmat);
|
||||
|
||||
/// Assemble the given element matrix
|
||||
/** The element matrix @a elmat is assembled for the element @a i, i.e.
|
||||
added to the system matrix. The flag @a skip_zeros skips the zero
|
||||
elements of the matrix, unless they are breaking the symmetry of
|
||||
the system matrix.
|
||||
*/
|
||||
void AssembleElementMatrix(int i, const DenseMatrix &elmat,
|
||||
int skip_zeros = 1);
|
||||
|
||||
/// Assemble the given element matrix
|
||||
/** The element matrix @a elmat is assembled for the element @a i, i.e.
|
||||
added to the system matrix. The vdofs of the element are returned
|
||||
in @a vdofs. The flag @a skip_zeros skips the zero elements of the
|
||||
matrix, unless they are breaking the symmetry of the system matrix.
|
||||
*/
|
||||
void AssembleElementMatrix(int i, const DenseMatrix &elmat,
|
||||
Array<int> &vdofs, int skip_zeros = 1);
|
||||
|
||||
/// Assemble the given boundary element matrix
|
||||
/** The boundary element matrix @a elmat is assembled for the boundary
|
||||
element @a i, i.e. added to the system matrix. The flag @a skip_zeros
|
||||
skips the zero elements of the matrix, unless they are breaking the
|
||||
symmetry of the system matrix.
|
||||
*/
|
||||
void AssembleBdrElementMatrix(int i, const DenseMatrix &elmat,
|
||||
int skip_zeros = 1);
|
||||
|
||||
/// Assemble the given boundary element matrix
|
||||
/** The boundary element matrix @a elmat is assembled for the boundary
|
||||
element @a i, i.e. added to the system matrix. The vdofs of the element
|
||||
are returned in @a vdofs. The flag @a skip_zeros skips the zero elements
|
||||
of the matrix, unless they are breaking the symmetry of the system matrix.
|
||||
*/
|
||||
void AssembleBdrElementMatrix(int i, const DenseMatrix &elmat,
|
||||
Array<int> &vdofs, int skip_zeros = 1);
|
||||
|
||||
@@ -513,16 +553,26 @@ protected:
|
||||
FiniteElementSpace *trial_fes, ///< Not owned
|
||||
*test_fes; ///< Not owned
|
||||
|
||||
/** @brief Indicates the BilinearFormIntegrator%s stored in #dom, #bdr, and
|
||||
#skt are owned by another MixedBilinearForm. */
|
||||
/** @brief Indicates the BilinearFormIntegrator%s stored in #dbfi, #bbfi,
|
||||
#tfbfi and #btfbfi are owned by another MixedBilinearForm. */
|
||||
int extern_bfs;
|
||||
|
||||
/// Domain integrators.
|
||||
Array<BilinearFormIntegrator*> dom;
|
||||
Array<BilinearFormIntegrator*> dbfi;
|
||||
|
||||
/// Boundary integrators.
|
||||
Array<BilinearFormIntegrator*> bdr;
|
||||
Array<BilinearFormIntegrator*> bbfi;
|
||||
Array<Array<int>*> bbfi_marker;///< Entries are not owned.
|
||||
|
||||
/// Trace face (skeleton) integrators.
|
||||
Array<BilinearFormIntegrator*> skt;
|
||||
Array<BilinearFormIntegrator*> tfbfi;
|
||||
|
||||
/// Boundary trace face (skeleton) integrators.
|
||||
Array<BilinearFormIntegrator*> btfbfi;
|
||||
Array<Array<int>*> btfbfi_marker;///< Entries are not owned.
|
||||
|
||||
DenseMatrix elemmat;
|
||||
Array<int> trial_vdofs, test_vdofs;
|
||||
|
||||
private:
|
||||
/// Copy construction is not supported; body is undefined.
|
||||
@@ -586,6 +636,10 @@ public:
|
||||
/// Adds a boundary integrator. Assumes ownership of @a bfi.
|
||||
void AddBoundaryIntegrator(BilinearFormIntegrator *bfi);
|
||||
|
||||
/// Adds a boundary integrator. Assumes ownership of @a bfi.
|
||||
void AddBoundaryIntegrator (BilinearFormIntegrator * bfi,
|
||||
Array<int> &bdr_marker);
|
||||
|
||||
/** @brief Add a trace face integrator. Assumes ownership of @a bfi.
|
||||
|
||||
This type of integrator assembles terms over all faces of the mesh using
|
||||
@@ -593,14 +647,32 @@ public:
|
||||
test space. */
|
||||
void AddTraceFaceIntegrator(BilinearFormIntegrator *bfi);
|
||||
|
||||
/// Adds a boundary trace face integrator. Assumes ownership of @a bfi.
|
||||
void AddBdrTraceFaceIntegrator (BilinearFormIntegrator * bfi);
|
||||
|
||||
/// Adds a boundary trace face integrator. Assumes ownership of @a bfi.
|
||||
void AddBdrTraceFaceIntegrator (BilinearFormIntegrator * bfi,
|
||||
Array<int> &bdr_marker);
|
||||
|
||||
/// Access all integrators added with AddDomainIntegrator().
|
||||
Array<BilinearFormIntegrator*> *GetDBFI() { return &dom; }
|
||||
Array<BilinearFormIntegrator*> *GetDBFI() { return &dbfi; }
|
||||
|
||||
/// Access all integrators added with AddBoundaryIntegrator().
|
||||
Array<BilinearFormIntegrator*> *GetBBFI() { return &bdr; }
|
||||
Array<BilinearFormIntegrator*> *GetBBFI() { return &bbfi; }
|
||||
/** @brief Access all boundary markers added with AddBoundaryIntegrator().
|
||||
If no marker was specified when the integrator was added, the
|
||||
corresponding pointer (to Array<int>) will be NULL. */
|
||||
Array<Array<int>*> *GetBBFI_Marker() { return &bbfi_marker; }
|
||||
|
||||
/// Access all integrators added with AddTraceFaceIntegrator().
|
||||
Array<BilinearFormIntegrator*> *GetTFBFI() { return &skt; }
|
||||
Array<BilinearFormIntegrator*> *GetTFBFI() { return &tfbfi; }
|
||||
|
||||
/// Access all integrators added with AddBdrTraceFaceIntegrator().
|
||||
Array<BilinearFormIntegrator*> *GetBTFBFI() { return &btfbfi; }
|
||||
/** @brief Access all boundary markers added with AddBdrTraceFaceIntegrator().
|
||||
If no marker was specified when the integrator was added, the
|
||||
corresponding pointer (to Array<int>) will be NULL. */
|
||||
Array<Array<int>*> *GetBTFBFI_Marker() { return &btfbfi_marker; }
|
||||
|
||||
void operator=(const double a) { *mat = a; }
|
||||
|
||||
@@ -613,13 +685,59 @@ public:
|
||||
MixedBilinearForm becomes an operator on the conforming FE spaces. */
|
||||
void ConformingAssemble();
|
||||
|
||||
void EliminateTrialDofs(Array<int> &bdr_attr_is_ess,
|
||||
/// Compute the element matrix of the given element
|
||||
void ComputeElementMatrix(int i, DenseMatrix &elmat);
|
||||
|
||||
/// Compute the boundary element matrix of the given boundary element
|
||||
void ComputeBdrElementMatrix(int i, DenseMatrix &elmat);
|
||||
|
||||
/// Assemble the given element matrix
|
||||
/** The element matrix @a elmat is assembled for the element @a i, i.e.
|
||||
added to the system matrix. The flag @a skip_zeros skips the zero
|
||||
elements of the matrix, unless they are breaking the symmetry of
|
||||
the system matrix.
|
||||
*/
|
||||
void AssembleElementMatrix(int i, const DenseMatrix &elmat,
|
||||
int skip_zeros = 1);
|
||||
|
||||
/// Assemble the given element matrix
|
||||
/** The element matrix @a elmat is assembled for the element @a i, i.e.
|
||||
added to the system matrix. The vdofs of the element are returned
|
||||
in @a trial_vdofs and @a test_vdofs. The flag @a skip_zeros skips
|
||||
the zero elements of the matrix, unless they are breaking the symmetry
|
||||
of the system matrix.
|
||||
*/
|
||||
void AssembleElementMatrix(int i, const DenseMatrix &elmat,
|
||||
Array<int> &trial_vdofs, Array<int> &test_vdofs,
|
||||
int skip_zeros = 1);
|
||||
|
||||
/// Assemble the given boundary element matrix
|
||||
/** The boundary element matrix @a elmat is assembled for the boundary
|
||||
element @a i, i.e. added to the system matrix. The flag @a skip_zeros
|
||||
skips the zero elements of the matrix, unless they are breaking the
|
||||
symmetry of the system matrix.
|
||||
*/
|
||||
void AssembleBdrElementMatrix(int i, const DenseMatrix &elmat,
|
||||
int skip_zeros = 1);
|
||||
|
||||
/// Assemble the given boundary element matrix
|
||||
/** The boundary element matrix @a elmat is assembled for the boundary
|
||||
element @a i, i.e. added to the system matrix. The vdofs of the element
|
||||
are returned in @a trial_vdofs and @a test_vdofs. The flag @a skip_zeros
|
||||
skips the zero elements of the matrix, unless they are breaking the
|
||||
symmetry of the system matrix.
|
||||
*/
|
||||
void AssembleBdrElementMatrix(int i, const DenseMatrix &elmat,
|
||||
Array<int> &trial_vdofs, Array<int> &test_vdofs,
|
||||
int skip_zeros = 1);
|
||||
|
||||
void EliminateTrialDofs(const Array<int> &bdr_attr_is_ess,
|
||||
const Vector &sol, Vector &rhs);
|
||||
|
||||
void EliminateEssentialBCFromTrialDofs(Array<int> &marked_vdofs,
|
||||
void EliminateEssentialBCFromTrialDofs(const Array<int> &marked_vdofs,
|
||||
const Vector &sol, Vector &rhs);
|
||||
|
||||
virtual void EliminateTestDofs(Array<int> &bdr_attr_is_ess);
|
||||
virtual void EliminateTestDofs(const Array<int> &bdr_attr_is_ess);
|
||||
|
||||
void Update();
|
||||
|
||||
@@ -684,7 +802,7 @@ public:
|
||||
{ AddTraceFaceIntegrator(di); }
|
||||
|
||||
/// Access all interpolators added with AddDomainInterpolator().
|
||||
Array<BilinearFormIntegrator*> *GetDI() { return &dom; }
|
||||
Array<BilinearFormIntegrator*> *GetDI() { return &dbfi; }
|
||||
|
||||
/** @brief Construct the internal matrix representation of the discrete
|
||||
linear operator. */
|
||||
|
||||
+52
-137
@@ -36,16 +36,18 @@ const Operator *BilinearFormExtension::GetRestriction() const
|
||||
|
||||
|
||||
// Data and methods for partially-assembled bilinear forms
|
||||
PABilinearFormExtension::PABilinearFormExtension(BilinearForm *form) :
|
||||
BilinearFormExtension(form),
|
||||
trialFes(a->FESpace()), testFes(a->FESpace()),
|
||||
localX(trialFes->GetNE() * trialFes->GetFE(0)->GetDof() * trialFes->GetVDim()),
|
||||
localY( testFes->GetNE() * testFes->GetFE(0)->GetDof() * testFes->GetVDim()),
|
||||
elem_restrict(new ElemRestriction(*a->FESpace())) { }
|
||||
|
||||
PABilinearFormExtension::~PABilinearFormExtension()
|
||||
PABilinearFormExtension::PABilinearFormExtension(BilinearForm *form)
|
||||
: BilinearFormExtension(form),
|
||||
trialFes(a->FESpace()), testFes(a->FESpace())
|
||||
{
|
||||
delete elem_restrict;
|
||||
elem_restrict_lex = trialFes->GetElementRestriction(
|
||||
ElementDofOrdering::LEXICOGRAPHIC);
|
||||
if (elem_restrict_lex)
|
||||
{
|
||||
localX.SetSize(elem_restrict_lex->Height(), Device::GetMemoryType());
|
||||
localY.SetSize(elem_restrict_lex->Height(), Device::GetMemoryType());
|
||||
localY.UseDevice(true); // ensure 'localY = 0.0' is done on device
|
||||
}
|
||||
}
|
||||
|
||||
void PABilinearFormExtension::Assemble()
|
||||
@@ -54,7 +56,7 @@ void PABilinearFormExtension::Assemble()
|
||||
const int integratorCount = integrators.Size();
|
||||
for (int i = 0; i < integratorCount; ++i)
|
||||
{
|
||||
integrators[i]->Assemble(*a->FESpace());
|
||||
integrators[i]->AssemblePA(*a->FESpace());
|
||||
}
|
||||
}
|
||||
|
||||
@@ -64,12 +66,13 @@ void PABilinearFormExtension::Update()
|
||||
height = width = fes->GetVSize();
|
||||
trialFes = fes;
|
||||
testFes = fes;
|
||||
localX.SetSize(trialFes->GetNE() * trialFes->GetFE(0)->GetDof() *
|
||||
trialFes->GetVDim());
|
||||
localY.SetSize(testFes->GetNE() * testFes->GetFE(0)->GetDof() *
|
||||
testFes->GetVDim());
|
||||
delete elem_restrict;
|
||||
elem_restrict = new ElemRestriction(*fes);
|
||||
elem_restrict_lex = trialFes->GetElementRestriction(
|
||||
ElementDofOrdering::LEXICOGRAPHIC);
|
||||
if (elem_restrict_lex)
|
||||
{
|
||||
localX.SetSize(elem_restrict_lex->Height());
|
||||
localY.SetSize(elem_restrict_lex->Height());
|
||||
}
|
||||
}
|
||||
|
||||
void PABilinearFormExtension::FormSystemMatrix(const Array<int> &ess_tdof_list,
|
||||
@@ -97,140 +100,52 @@ void PABilinearFormExtension::FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
void PABilinearFormExtension::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
|
||||
elem_restrict->Mult(x, localX);
|
||||
localY = 0.0;
|
||||
|
||||
const int iSz = integrators.Size();
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
if (elem_restrict_lex)
|
||||
{
|
||||
integrators[i]->MultAssembled(localX, localY);
|
||||
elem_restrict_lex->Mult(x, localX);
|
||||
localY = 0.0;
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
integrators[i]->AddMultPA(localX, localY);
|
||||
}
|
||||
elem_restrict_lex->MultTranspose(localY, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
y.UseDevice(true); // typically this is a large vector, so store on device
|
||||
y = 0.0;
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
integrators[i]->AddMultPA(x, y);
|
||||
}
|
||||
}
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
}
|
||||
|
||||
void PABilinearFormExtension::MultTranspose(const Vector &x, Vector &y) const
|
||||
{
|
||||
Array<BilinearFormIntegrator*> &integrators = *a->GetDBFI();
|
||||
elem_restrict->Mult(x, localX);
|
||||
localY = 0.0;
|
||||
const int iSz = integrators.Size();
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
if (elem_restrict_lex)
|
||||
{
|
||||
integrators[i]->MultAssembledTranspose(localX, localY);
|
||||
}
|
||||
elem_restrict->MultTranspose(localY, y);
|
||||
}
|
||||
|
||||
|
||||
ElemRestriction::ElemRestriction(const FiniteElementSpace &f)
|
||||
: fes(f),
|
||||
ne(fes.GetNE()),
|
||||
vdim(fes.GetVDim()),
|
||||
byvdim(fes.GetOrdering() == Ordering::byVDIM),
|
||||
ndofs(fes.GetNDofs()),
|
||||
dof(fes.GetFE(0)->GetDof()),
|
||||
nedofs(ne*dof),
|
||||
offsets(ndofs+1),
|
||||
indices(ne*dof)
|
||||
{
|
||||
for (int e = 0; e < ne; ++e)
|
||||
{
|
||||
const FiniteElement *fe = fes.GetFE(e);
|
||||
const TensorBasisElement* el =
|
||||
dynamic_cast<const TensorBasisElement*>(fe);
|
||||
if (el) { continue; }
|
||||
mfem_error("Finite element not supported with partial assembly");
|
||||
}
|
||||
const FiniteElement *fe = fes.GetFE(0);
|
||||
const TensorBasisElement* el = dynamic_cast<const TensorBasisElement*>(fe);
|
||||
const Array<int> &dof_map = el->GetDofMap();
|
||||
const bool dof_map_is_identity = (dof_map.Size()==0);
|
||||
const Table& e2dTable = fes.GetElementToDofTable();
|
||||
const int* elementMap = e2dTable.GetJ();
|
||||
// We'll be keeping a count of how many local nodes point to its global dof
|
||||
for (int i = 0; i <= ndofs; ++i)
|
||||
{
|
||||
offsets[i] = 0;
|
||||
}
|
||||
for (int e = 0; e < ne; ++e)
|
||||
{
|
||||
for (int d = 0; d < dof; ++d)
|
||||
elem_restrict_lex->Mult(x, localX);
|
||||
localY = 0.0;
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
const int gid = elementMap[dof*e + d];
|
||||
++offsets[gid + 1];
|
||||
integrators[i]->AddMultTransposePA(localX, localY);
|
||||
}
|
||||
elem_restrict_lex->MultTranspose(localY, y);
|
||||
}
|
||||
else
|
||||
{
|
||||
y.UseDevice(true);
|
||||
y = 0.0;
|
||||
for (int i = 0; i < iSz; ++i)
|
||||
{
|
||||
integrators[i]->AddMultTransposePA(x, y);
|
||||
}
|
||||
}
|
||||
// Aggregate to find offsets for each global dof
|
||||
for (int i = 1; i <= ndofs; ++i)
|
||||
{
|
||||
offsets[i] += offsets[i - 1];
|
||||
}
|
||||
// For each global dof, fill in all local nodes that point to it
|
||||
for (int e = 0; e < ne; ++e)
|
||||
{
|
||||
for (int d = 0; d < dof; ++d)
|
||||
{
|
||||
const int did = dof_map_is_identity?d:dof_map[d];
|
||||
const int gid = elementMap[dof*e + did];
|
||||
const int lid = dof*e + d;
|
||||
indices[offsets[gid]++] = lid;
|
||||
}
|
||||
}
|
||||
// We shifted the offsets vector by 1 by using it as a counter
|
||||
// Now we shift it back.
|
||||
for (int i = ndofs; i > 0; --i)
|
||||
{
|
||||
offsets[i] = offsets[i - 1];
|
||||
}
|
||||
offsets[0] = 0;
|
||||
}
|
||||
|
||||
void ElemRestriction::Mult(const Vector& x, Vector& y) const
|
||||
{
|
||||
const int vd = vdim;
|
||||
const bool t = byvdim;
|
||||
const DeviceArray d_offsets(offsets, ndofs+1);
|
||||
const DeviceArray d_indices(indices, nedofs);
|
||||
const DeviceMatrix d_x(x, t?vd:ndofs, t?ndofs:vd);
|
||||
DeviceMatrix d_y(y, t?vd:nedofs, t?nedofs:vd);
|
||||
MFEM_FORALL(i, ndofs,
|
||||
{
|
||||
const int offset = d_offsets[i];
|
||||
const int nextOffset = d_offsets[i+1];
|
||||
for (int c = 0; c < vd; ++c)
|
||||
{
|
||||
const double dofValue = d_x(t?c:i,t?i:c);
|
||||
for (int j = offset; j < nextOffset; ++j)
|
||||
{
|
||||
const int idx_j = d_indices[j];
|
||||
d_y(t?c:idx_j,t?idx_j:c) = dofValue;
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void ElemRestriction::MultTranspose(const Vector& x, Vector& y) const
|
||||
{
|
||||
const int vd = vdim;
|
||||
const bool t = byvdim;
|
||||
const DeviceArray d_offsets(offsets, ndofs+1);
|
||||
const DeviceArray d_indices(indices, nedofs);
|
||||
const DeviceMatrix d_x(x, t?vd:nedofs, t?nedofs:vd);
|
||||
DeviceMatrix d_y(y, t?vd:ndofs, t?ndofs:vd);
|
||||
MFEM_FORALL(i, ndofs,
|
||||
{
|
||||
const int offset = d_offsets[i];
|
||||
const int nextOffset = d_offsets[i + 1];
|
||||
for (int c = 0; c < vd; ++c)
|
||||
{
|
||||
double dofValue = 0;
|
||||
for (int j = offset; j < nextOffset; ++j)
|
||||
{
|
||||
const int idx_j = d_indices[j];
|
||||
dofValue += d_x(t?c:idx_j,t?idx_j:c);
|
||||
}
|
||||
d_y(t?c:i,t?i:c) = dofValue;
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
+11
-23
@@ -14,32 +14,16 @@
|
||||
|
||||
#include "../config/config.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "../general/device.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class BilinearForm;
|
||||
|
||||
/// Element restriction operator
|
||||
class ElemRestriction: public Operator
|
||||
{
|
||||
public:
|
||||
const FiniteElementSpace &fes;
|
||||
const int ne;
|
||||
const int vdim;
|
||||
const bool byvdim;
|
||||
const int ndofs;
|
||||
const int dof;
|
||||
const int nedofs;
|
||||
Array<int> offsets;
|
||||
Array<int> indices;
|
||||
public:
|
||||
ElemRestriction(const FiniteElementSpace&);
|
||||
void Mult(const Vector &x, Vector &y) const;
|
||||
void MultTranspose(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
|
||||
/** @brief Class extending the BilinearForm class to support the different
|
||||
AssemblyLevel%s. */
|
||||
class BilinearFormExtension : public Operator
|
||||
{
|
||||
protected:
|
||||
@@ -48,6 +32,9 @@ protected:
|
||||
public:
|
||||
BilinearFormExtension(BilinearForm *form);
|
||||
|
||||
virtual MemoryClass GetMemoryClass() const
|
||||
{ return Device::GetMemoryClass(); }
|
||||
|
||||
/// Get the finite element space prolongation matrix
|
||||
virtual const Operator *GetProlongation() const;
|
||||
|
||||
@@ -80,6 +67,7 @@ public:
|
||||
int copy_interior = 0) {}
|
||||
void Mult(const Vector &x, Vector &y) const {}
|
||||
void MultTranspose(const Vector &x, Vector &y) const {}
|
||||
void Update() {}
|
||||
~FABilinearFormExtension() {}
|
||||
};
|
||||
|
||||
@@ -99,6 +87,7 @@ public:
|
||||
int copy_interior = 0) {}
|
||||
void Mult(const Vector &x, Vector &y) const {}
|
||||
void MultTranspose(const Vector &x, Vector &y) const {}
|
||||
void Update() {}
|
||||
~EABilinearFormExtension() {}
|
||||
};
|
||||
|
||||
@@ -106,9 +95,9 @@ public:
|
||||
class PABilinearFormExtension : public BilinearFormExtension
|
||||
{
|
||||
protected:
|
||||
const FiniteElementSpace *trialFes, *testFes;
|
||||
const FiniteElementSpace *trialFes, *testFes; // Not owned
|
||||
mutable Vector localX, localY;
|
||||
ElemRestriction *elem_restrict;
|
||||
const Operator *elem_restrict_lex; // Not owned
|
||||
|
||||
public:
|
||||
PABilinearFormExtension(BilinearForm*);
|
||||
@@ -123,8 +112,6 @@ public:
|
||||
void Mult(const Vector &x, Vector &y) const;
|
||||
void MultTranspose(const Vector &x, Vector &y) const;
|
||||
void Update();
|
||||
|
||||
~PABilinearFormExtension();
|
||||
};
|
||||
|
||||
/// Data and methods for matrix-free bilinear forms
|
||||
@@ -143,6 +130,7 @@ public:
|
||||
int copy_interior = 0) {}
|
||||
void Mult(const Vector &x, Vector &y) const {}
|
||||
void MultTranspose(const Vector &x, Vector &y) const {}
|
||||
void Update() {}
|
||||
~MFBilinearFormExtension() {}
|
||||
};
|
||||
|
||||
|
||||
+55
-102
@@ -19,19 +19,20 @@ using namespace std;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
void BilinearFormIntegrator::Assemble(const FiniteElementSpace&)
|
||||
|
||||
void BilinearFormIntegrator::AssemblePA(const FiniteElementSpace&)
|
||||
{
|
||||
mfem_error ("BilinearFormIntegrator::Assemble (...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::MultAssembled(Vector&, Vector&)
|
||||
void BilinearFormIntegrator::AddMultPA(const Vector &, Vector &) const
|
||||
{
|
||||
mfem_error ("BilinearFormIntegrator::MultAssembled (...)\n"
|
||||
" is not implemented for this class.");
|
||||
}
|
||||
|
||||
void BilinearFormIntegrator::MultAssembledTranspose(Vector&, Vector&)
|
||||
void BilinearFormIntegrator::AddMultTransposePA(const Vector &, Vector &) const
|
||||
{
|
||||
mfem_error ("BilinearFormIntegrator::MultAssembledTranspose (...)\n"
|
||||
" is not implemented for this class.");
|
||||
@@ -378,6 +379,7 @@ void MixedScalarVectorIntegrator::AssembleElementMatrix2(
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void DiffusionIntegrator::AssembleElementMatrix
|
||||
( const FiniteElement &el, ElementTransformation &Trans,
|
||||
DenseMatrix &elmat )
|
||||
@@ -397,29 +399,7 @@ void DiffusionIntegrator::AssembleElementMatrix
|
||||
#endif
|
||||
elmat.SetSize(nd);
|
||||
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int order;
|
||||
if (el.Space() == FunctionSpace::Pk)
|
||||
{
|
||||
order = 2*el.GetOrder() - 2;
|
||||
}
|
||||
else
|
||||
// order = 2*el.GetOrder() - 2; // <-- this seems to work fine too
|
||||
{
|
||||
order = 2*el.GetOrder() + dim - 1;
|
||||
}
|
||||
|
||||
if (el.Space() == FunctionSpace::rQk)
|
||||
{
|
||||
ir = &RefinedIntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
else
|
||||
{
|
||||
ir = &IntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
}
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, el);
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
@@ -475,28 +455,7 @@ void DiffusionIntegrator::AssembleElementMatrix2(
|
||||
#endif
|
||||
elmat.SetSize(te_nd, tr_nd);
|
||||
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int order;
|
||||
if (trial_fe.Space() == FunctionSpace::Pk)
|
||||
{
|
||||
order = trial_fe.GetOrder() + test_fe.GetOrder() - 2;
|
||||
}
|
||||
else
|
||||
{
|
||||
order = trial_fe.GetOrder() + test_fe.GetOrder() + dim - 1;
|
||||
}
|
||||
|
||||
if (trial_fe.Space() == FunctionSpace::rQk)
|
||||
{
|
||||
ir = &RefinedIntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
else
|
||||
{
|
||||
ir = &IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
}
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(trial_fe, test_fe);
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
@@ -551,29 +510,7 @@ void DiffusionIntegrator::AssembleElementVector(
|
||||
|
||||
elvect.SetSize(nd);
|
||||
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int order;
|
||||
if (el.Space() == FunctionSpace::Pk)
|
||||
{
|
||||
order = 2*el.GetOrder() - 2;
|
||||
}
|
||||
else
|
||||
// order = 2*el.GetOrder() - 2; // <-- this seems to work fine too
|
||||
{
|
||||
order = 2*el.GetOrder() + dim - 1;
|
||||
}
|
||||
|
||||
if (el.Space() == FunctionSpace::rQk)
|
||||
{
|
||||
ir = &RefinedIntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
else
|
||||
{
|
||||
ir = &IntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
}
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, el);
|
||||
|
||||
elvect = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
@@ -733,6 +670,27 @@ double DiffusionIntegrator::ComputeFluxEnergy
|
||||
return energy;
|
||||
}
|
||||
|
||||
const IntegrationRule &DiffusionIntegrator::GetRule(
|
||||
const FiniteElement &trial_fe, const FiniteElement &test_fe)
|
||||
{
|
||||
int order;
|
||||
if (trial_fe.Space() == FunctionSpace::Pk)
|
||||
{
|
||||
order = trial_fe.GetOrder() + test_fe.GetOrder() - 2;
|
||||
}
|
||||
else
|
||||
{
|
||||
// order = 2*el.GetOrder() - 2; // <-- this seems to work fine too
|
||||
order = trial_fe.GetOrder() + test_fe.GetOrder() + trial_fe.GetDim() - 1;
|
||||
}
|
||||
|
||||
if (trial_fe.Space() == FunctionSpace::rQk)
|
||||
{
|
||||
return RefinedIntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
return IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
|
||||
void MassIntegrator::AssembleElementMatrix
|
||||
( const FiniteElement &el, ElementTransformation &Trans,
|
||||
@@ -748,21 +706,7 @@ void MassIntegrator::AssembleElementMatrix
|
||||
elmat.SetSize(nd);
|
||||
shape.SetSize(nd);
|
||||
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
// int order = 2 * el.GetOrder();
|
||||
int order = 2 * el.GetOrder() + Trans.OrderW();
|
||||
|
||||
if (el.Space() == FunctionSpace::rQk)
|
||||
{
|
||||
ir = &RefinedIntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
else
|
||||
{
|
||||
ir = &IntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
}
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, el, Trans);
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
@@ -797,13 +741,8 @@ void MassIntegrator::AssembleElementMatrix2(
|
||||
shape.SetSize(tr_nd);
|
||||
te_shape.SetSize(te_nd);
|
||||
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int order = trial_fe.GetOrder() + test_fe.GetOrder() + Trans.OrderW();
|
||||
|
||||
ir = &IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
const IntegrationRule *ir = IntRule ? IntRule :
|
||||
&GetRule(trial_fe, test_fe, Trans);
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
@@ -824,6 +763,20 @@ void MassIntegrator::AssembleElementMatrix2(
|
||||
}
|
||||
}
|
||||
|
||||
const IntegrationRule &MassIntegrator::GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans)
|
||||
{
|
||||
// int order = trial_fe.GetOrder() + test_fe.GetOrder();
|
||||
const int order = trial_fe.GetOrder() + test_fe.GetOrder() + Trans.OrderW();
|
||||
|
||||
if (trial_fe.Space() == FunctionSpace::rQk)
|
||||
{
|
||||
return RefinedIntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
return IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
|
||||
void BoundaryMassIntegrator::AssembleFaceMatrix(
|
||||
const FiniteElement &el1, const FiniteElement &el2,
|
||||
@@ -895,7 +848,7 @@ void ConvectionIntegrator::AssembleElementMatrix(
|
||||
ir = &IntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
|
||||
Q.Eval(Q_ir, Trans, *ir);
|
||||
Q->Eval(Q_ir, Trans, *ir);
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
@@ -936,7 +889,7 @@ void GroupConvectionIntegrator::AssembleElementMatrix(
|
||||
ir = &IntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
|
||||
Q.Eval(Q_nodal, Trans, el.GetNodes()); // sets the size of Q_nodal
|
||||
Q->Eval(Q_nodal, Trans, el.GetNodes()); // sets the size of Q_nodal
|
||||
|
||||
elmat = 0.0;
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
@@ -1417,7 +1370,7 @@ void DerivativeIntegrator::AssembleElementMatrix2 (
|
||||
dshapedxi(l) = dshapedxt(l,xi);
|
||||
}
|
||||
|
||||
shape *= Q.Eval(Trans,ip) * det * ip.weight;
|
||||
shape *= Q->Eval(Trans,ip) * det * ip.weight;
|
||||
AddMultVWt (shape, dshapedxi, elmat);
|
||||
}
|
||||
}
|
||||
@@ -3263,7 +3216,7 @@ ScalarProductInterpolator::AssembleElementMatrix2(const FiniteElement &dom_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat)
|
||||
{
|
||||
internal::ShapeCoefficient dom_shape_coeff(Q, dom_fe);
|
||||
internal::ShapeCoefficient dom_shape_coeff(*Q, dom_fe);
|
||||
|
||||
elmat.SetSize(ran_fe.GetDof(),dom_fe.GetDof());
|
||||
|
||||
@@ -3298,7 +3251,7 @@ ScalarVectorProductInterpolator::AssembleElementMatrix2(
|
||||
}
|
||||
};
|
||||
|
||||
VShapeCoefficient dom_shape_coeff(Q, dom_fe, Trans.GetSpaceDim());
|
||||
VShapeCoefficient dom_shape_coeff(*Q, dom_fe, Trans.GetSpaceDim());
|
||||
|
||||
elmat.SetSize(ran_fe.GetDof(),dom_fe.GetDof());
|
||||
|
||||
@@ -3336,7 +3289,7 @@ VectorScalarProductInterpolator::AssembleElementMatrix2(
|
||||
}
|
||||
};
|
||||
|
||||
VecShapeCoefficient dom_shape_coeff(VQ, dom_fe);
|
||||
VecShapeCoefficient dom_shape_coeff(*VQ, dom_fe);
|
||||
|
||||
elmat.SetSize(ran_fe.GetDof(),dom_fe.GetDof());
|
||||
|
||||
@@ -3383,11 +3336,11 @@ VectorCrossProductInterpolator::AssembleElementMatrix2(
|
||||
}
|
||||
};
|
||||
|
||||
VCrossVShapeCoefficient dom_shape_coeff(VQ, dom_fe);
|
||||
VCrossVShapeCoefficient dom_shape_coeff(*VQ, dom_fe);
|
||||
|
||||
if (ran_fe.GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
elmat.SetSize(ran_fe.GetDof()*VQ.GetVDim(),dom_fe.GetDof());
|
||||
elmat.SetSize(ran_fe.GetDof()*VQ->GetVDim(),dom_fe.GetDof());
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -3436,7 +3389,7 @@ VectorInnerProductInterpolator::AssembleElementMatrix2(
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat)
|
||||
{
|
||||
internal::VDotVShapeCoefficient dom_shape_coeff(VQ, dom_fe);
|
||||
internal::VDotVShapeCoefficient dom_shape_coeff(*VQ, dom_fe);
|
||||
|
||||
elmat.SetSize(ran_fe.GetDof(),dom_fe.GetDof());
|
||||
|
||||
|
||||
+128
-63
@@ -15,7 +15,6 @@
|
||||
#include "../config/config.hpp"
|
||||
#include "nonlininteg.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "bilininteg_ext.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -23,19 +22,45 @@ namespace mfem
|
||||
/// Abstract base class BilinearFormIntegrator
|
||||
class BilinearFormIntegrator : public NonlinearFormIntegrator
|
||||
{
|
||||
public:
|
||||
BilinearFormIntegrator(const IntegrationRule *ir = NULL) :
|
||||
NonlinearFormIntegrator(ir) { }
|
||||
protected:
|
||||
BilinearFormIntegrator(const IntegrationRule *ir = NULL)
|
||||
: NonlinearFormIntegrator(ir) { }
|
||||
|
||||
public:
|
||||
// TODO: add support for other assembly levels (in addition to PA) and their
|
||||
// actions.
|
||||
|
||||
// TODO: for mixed meshes the quadrature rules to be used by methods like
|
||||
// AssemblePA() can be given as a QuadratureSpace, e.g. using a new method:
|
||||
// SetQuadratureSpace().
|
||||
|
||||
// TODO: the methods for the various assembly levels make sense even in the
|
||||
// base class NonlinearFormIntegrator, except that not all assembly levels
|
||||
// make sense for the action of the nonlinear operator (but they all make
|
||||
// sense for its Jacobian).
|
||||
|
||||
/// Method defining partial assembly.
|
||||
virtual void Assemble(const FiniteElementSpace&);
|
||||
/** The result of the partial assembly is stored internally so that it can be
|
||||
used later in the methods AddMultPA() and AddMultTransposePA(). */
|
||||
virtual void AssemblePA(const FiniteElementSpace &fes);
|
||||
|
||||
/// Method for partially assembled action.
|
||||
virtual void MultAssembled(Vector&, Vector&);
|
||||
/** Perform the action of integrator on the input @a x and add the result to
|
||||
the output @a y. Both @a x and @a y are E-vectors, i.e. they represent
|
||||
the element-wise discontinuous version of the FE space.
|
||||
|
||||
This method can be called only after the method AssemblePA() has been
|
||||
called. */
|
||||
virtual void AddMultPA(const Vector &x, Vector &y) const;
|
||||
|
||||
/// Method for partially assembled transposed action.
|
||||
virtual void MultAssembledTranspose(Vector&, Vector&);
|
||||
/** Perform the transpose action of integrator on the input @a x and add the
|
||||
result to the output @a y. Both @a x and @a y are E-vectors, i.e. they
|
||||
represent the element-wise discontinuous version of the FE space.
|
||||
|
||||
This method can be called only after the method AssemblePA() has been
|
||||
called. */
|
||||
virtual void AddMultTransposePA(const Vector &x, Vector &y) const;
|
||||
|
||||
/// Given a particular Finite Element computes the element matrix elmat.
|
||||
virtual void AssembleElementMatrix(const FiniteElement &el,
|
||||
@@ -284,10 +309,10 @@ protected:
|
||||
Vector & shape)
|
||||
{ trial_fe.CalcPhysShape(Trans, shape); }
|
||||
|
||||
private:
|
||||
|
||||
Coefficient *Q;
|
||||
|
||||
private:
|
||||
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
Vector test_shape;
|
||||
Vector trial_shape;
|
||||
@@ -358,13 +383,13 @@ protected:
|
||||
DenseMatrix & shape)
|
||||
{ trial_fe.CalcVShape(Trans, shape); }
|
||||
|
||||
private:
|
||||
|
||||
Coefficient *Q;
|
||||
VectorCoefficient *VQ;
|
||||
VectorCoefficient *DQ;
|
||||
MatrixCoefficient *MQ;
|
||||
|
||||
private:
|
||||
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
Vector V;
|
||||
Vector D;
|
||||
@@ -439,12 +464,12 @@ protected:
|
||||
Vector & shape)
|
||||
{ scalar_fe.CalcPhysShape(Trans, shape); }
|
||||
|
||||
private:
|
||||
|
||||
VectorCoefficient *VQ;
|
||||
bool transpose;
|
||||
bool cross_2d; // In 2D use a cross product rather than a dot product
|
||||
|
||||
private:
|
||||
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
Vector V;
|
||||
DenseMatrix vshape;
|
||||
@@ -1637,27 +1662,34 @@ protected:
|
||||
can be a scalar or a matrix coefficient. */
|
||||
class DiffusionIntegrator: public BilinearFormIntegrator
|
||||
{
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
MatrixCoefficient *MQ;
|
||||
|
||||
private:
|
||||
Vector vec, pointflux, shape;
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
DenseMatrix dshape, dshapedxt, invdfdx, mq;
|
||||
DenseMatrix te_dshape, te_dshapedxt;
|
||||
#endif
|
||||
Coefficient *Q;
|
||||
MatrixCoefficient *MQ;
|
||||
|
||||
// PA extension
|
||||
DofToQuad *maps;
|
||||
GeometryExtension *geom;
|
||||
const DofToQuad *maps; ///< Not owned
|
||||
const GeometricFactors *geom; ///< Not owned
|
||||
int dim, ne, dofs1D, quad1D;
|
||||
Vector pa_data;
|
||||
|
||||
public:
|
||||
/// Construct a diffusion integrator with coefficient Q = 1
|
||||
DiffusionIntegrator() { Q = NULL; MQ = NULL; maps = NULL; geom = NULL; }
|
||||
|
||||
/// Construct a diffusion integrator with a scalar coefficient q
|
||||
DiffusionIntegrator (Coefficient &q) : Q(&q) { MQ = NULL; maps = NULL; geom = NULL; }
|
||||
DiffusionIntegrator(Coefficient &q)
|
||||
: Q(&q) { MQ = NULL; maps = NULL; geom = NULL; }
|
||||
|
||||
/// Construct a diffusion integrator with a matrix coefficient q
|
||||
DiffusionIntegrator (MatrixCoefficient &q) : MQ(&q) { Q = NULL; maps = NULL; geom = NULL; }
|
||||
DiffusionIntegrator(MatrixCoefficient &q)
|
||||
: MQ(&q) { Q = NULL; maps = NULL; geom = NULL; }
|
||||
|
||||
/** Given a particular Finite Element
|
||||
computes the element stiffness matrix elmat. */
|
||||
@@ -1685,11 +1717,12 @@ public:
|
||||
ElementTransformation &Trans,
|
||||
Vector &flux, Vector *d_energy = NULL);
|
||||
|
||||
/// PA extension
|
||||
virtual void Assemble(const FiniteElementSpace&);
|
||||
virtual void MultAssembled(Vector&, Vector&);
|
||||
virtual void AssemblePA(const FiniteElementSpace&);
|
||||
|
||||
virtual ~DiffusionIntegrator();
|
||||
virtual void AddMultPA(const Vector&, Vector&) const;
|
||||
|
||||
static const IntegrationRule &GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe);
|
||||
};
|
||||
|
||||
/** Class for local mass matrix assembling a(u,v) := (Q u, v) */
|
||||
@@ -1701,13 +1734,15 @@ protected:
|
||||
#endif
|
||||
Coefficient *Q;
|
||||
// PA extension
|
||||
Vector vec;
|
||||
DofToQuad *maps;
|
||||
GeometryExtension *geom;
|
||||
Vector pa_data;
|
||||
const DofToQuad *maps; ///< Not owned
|
||||
const GeometricFactors *geom; ///< Not owned
|
||||
int dim, ne, nq, dofs1D, quad1D;
|
||||
|
||||
public:
|
||||
MassIntegrator(const IntegrationRule *ir = NULL)
|
||||
: BilinearFormIntegrator(ir) { Q = NULL; maps = NULL; geom = NULL; }
|
||||
|
||||
/// Construct a mass integrator with coefficient q
|
||||
MassIntegrator(Coefficient &q, const IntegrationRule *ir = NULL)
|
||||
: BilinearFormIntegrator(ir), Q(&q) { maps = NULL; geom = NULL; }
|
||||
@@ -1721,11 +1756,14 @@ public:
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
/// PA extension
|
||||
virtual void Assemble(const FiniteElementSpace&);
|
||||
virtual void MultAssembled(Vector&, Vector&);
|
||||
|
||||
virtual ~MassIntegrator();
|
||||
virtual void AssemblePA(const FiniteElementSpace&);
|
||||
|
||||
virtual void AddMultPA(const Vector&, Vector&) const;
|
||||
|
||||
static const IntegrationRule &GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans);
|
||||
};
|
||||
|
||||
class BoundaryMassIntegrator : public MassIntegrator
|
||||
@@ -1744,17 +1782,19 @@ public:
|
||||
/// alpha (q . grad u, v)
|
||||
class ConvectionIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
protected:
|
||||
VectorCoefficient *Q;
|
||||
double alpha;
|
||||
|
||||
private:
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
DenseMatrix dshape, adjJ, Q_ir;
|
||||
Vector shape, vec2, BdFidxT;
|
||||
#endif
|
||||
VectorCoefficient &Q;
|
||||
double alpha;
|
||||
|
||||
public:
|
||||
ConvectionIntegrator(VectorCoefficient &q, double a = 1.0)
|
||||
: Q(q) { alpha = a; }
|
||||
: Q(&q) { alpha = a; }
|
||||
virtual void AssembleElementMatrix(const FiniteElement &,
|
||||
ElementTransformation &,
|
||||
DenseMatrix &);
|
||||
@@ -1763,15 +1803,17 @@ public:
|
||||
/// alpha (q . grad u, v) using the "group" FE discretization
|
||||
class GroupConvectionIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
protected:
|
||||
VectorCoefficient *Q;
|
||||
double alpha;
|
||||
|
||||
private:
|
||||
DenseMatrix dshape, adjJ, Q_nodal, grad;
|
||||
Vector shape;
|
||||
VectorCoefficient &Q;
|
||||
double alpha;
|
||||
|
||||
public:
|
||||
GroupConvectionIntegrator(VectorCoefficient &q, double a = 1.0)
|
||||
: Q(q) { alpha = a; }
|
||||
: Q(&q) { alpha = a; }
|
||||
virtual void AssembleElementMatrix(const FiniteElement &,
|
||||
ElementTransformation &,
|
||||
DenseMatrix &);
|
||||
@@ -1787,16 +1829,17 @@ private:
|
||||
Vector shape, te_shape, vec;
|
||||
DenseMatrix partelmat;
|
||||
DenseMatrix mcoeff;
|
||||
int Q_order;
|
||||
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
VectorCoefficient *VQ;
|
||||
MatrixCoefficient *MQ;
|
||||
|
||||
int Q_order;
|
||||
|
||||
public:
|
||||
/// Construct an integrator with coefficient 1.0
|
||||
VectorMassIntegrator()
|
||||
: vdim(-1), Q(NULL), VQ(NULL), MQ(NULL), Q_order(0) { }
|
||||
: vdim(-1), Q_order(0), Q(NULL), VQ(NULL), MQ(NULL) { }
|
||||
/** Construct an integrator with scalar coefficient q.
|
||||
If possible, save memory by using a scalar integrator since
|
||||
the resulting matrix is block diagonal with the same diagonal
|
||||
@@ -1835,11 +1878,14 @@ public:
|
||||
does NOT depend on the ElementTransformation Trans. */
|
||||
class VectorFEDivergenceIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
|
||||
private:
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
Vector divshape, shape;
|
||||
#endif
|
||||
|
||||
public:
|
||||
VectorFEDivergenceIntegrator() { Q = NULL; }
|
||||
VectorFEDivergenceIntegrator(Coefficient &q) { Q = &q; }
|
||||
@@ -1857,14 +1903,17 @@ public:
|
||||
This is equivalent to a weak divergence of the Nedelec basis functions. */
|
||||
class VectorFEWeakDivergenceIntegrator: public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
|
||||
private:
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
DenseMatrix dshape;
|
||||
DenseMatrix dshapedxt;
|
||||
DenseMatrix vshape;
|
||||
DenseMatrix invdfdx;
|
||||
#endif
|
||||
|
||||
public:
|
||||
VectorFEWeakDivergenceIntegrator() { Q = NULL; }
|
||||
VectorFEWeakDivergenceIntegrator(Coefficient &q) { Q = &q; }
|
||||
@@ -1881,13 +1930,16 @@ public:
|
||||
test spaces are switched, assembles the form (u, curl v). */
|
||||
class VectorFECurlIntegrator: public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
|
||||
private:
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
DenseMatrix curlshapeTrial;
|
||||
DenseMatrix vshapeTest;
|
||||
DenseMatrix curlshapeTrial_dFT;
|
||||
#endif
|
||||
|
||||
public:
|
||||
VectorFECurlIntegrator() { Q = NULL; }
|
||||
VectorFECurlIntegrator(Coefficient &q) { Q = &q; }
|
||||
@@ -1900,17 +1952,19 @@ public:
|
||||
DenseMatrix &elmat);
|
||||
};
|
||||
|
||||
|
||||
/// Class for integrating (Q D_i(u), v); u and v are scalars
|
||||
class DerivativeIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
protected:
|
||||
Coefficient* Q;
|
||||
|
||||
private:
|
||||
Coefficient & Q;
|
||||
int xi;
|
||||
DenseMatrix dshape, dshapedxt, invdfdx;
|
||||
Vector shape, dshapedxi;
|
||||
|
||||
public:
|
||||
DerivativeIntegrator(Coefficient &q, int i) : Q(q), xi(i) { }
|
||||
DerivativeIntegrator(Coefficient &q, int i) : Q(&q), xi(i) { }
|
||||
virtual void AssembleElementMatrix(const FiniteElement &el,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat)
|
||||
@@ -1930,6 +1984,8 @@ private:
|
||||
DenseMatrix curlshape, curlshape_dFt, M;
|
||||
DenseMatrix vshape, projcurl;
|
||||
#endif
|
||||
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
MatrixCoefficient *MQ;
|
||||
|
||||
@@ -1963,6 +2019,8 @@ private:
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
DenseMatrix dshape_hat, dshape, curlshape, Jadj, grad_hat, grad;
|
||||
#endif
|
||||
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
|
||||
public:
|
||||
@@ -1984,9 +2042,6 @@ public:
|
||||
class VectorFEMassIntegrator: public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
Coefficient *Q;
|
||||
VectorCoefficient *VQ;
|
||||
MatrixCoefficient *MQ;
|
||||
void Init(Coefficient *q, VectorCoefficient *vq, MatrixCoefficient *mq)
|
||||
{ Q = q; VQ = vq; MQ = mq; }
|
||||
|
||||
@@ -1998,6 +2053,11 @@ private:
|
||||
DenseMatrix trial_vshape;
|
||||
#endif
|
||||
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
VectorCoefficient *VQ;
|
||||
MatrixCoefficient *MQ;
|
||||
|
||||
public:
|
||||
VectorFEMassIntegrator() { Init(NULL, NULL, NULL); }
|
||||
VectorFEMassIntegrator(Coefficient *_q) { Init(_q, NULL, NULL); }
|
||||
@@ -2020,9 +2080,10 @@ public:
|
||||
scalar FE space; p is also in a (different) scalar FE space. */
|
||||
class VectorDivergenceIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
|
||||
private:
|
||||
Vector shape;
|
||||
Vector divshape;
|
||||
DenseMatrix dshape;
|
||||
@@ -2043,9 +2104,10 @@ public:
|
||||
/// (Q div u, div v) for RT elements
|
||||
class DivDivIntegrator: public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
|
||||
private:
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
Vector divshape;
|
||||
#endif
|
||||
@@ -2067,9 +2129,10 @@ public:
|
||||
diffusion matrix in each diagonal block. */
|
||||
class VectorDiffusionIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
protected:
|
||||
Coefficient *Q;
|
||||
|
||||
private:
|
||||
DenseMatrix Jinv;
|
||||
DenseMatrix dshape;
|
||||
DenseMatrix gshape;
|
||||
@@ -2094,10 +2157,11 @@ public:
|
||||
using multiple copies of a scalar FE space. */
|
||||
class ElasticityIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
protected:
|
||||
double q_lambda, q_mu;
|
||||
Coefficient *lambda, *mu;
|
||||
|
||||
private:
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
Vector shape;
|
||||
DenseMatrix dshape, gshape, pelmat;
|
||||
@@ -2154,11 +2218,12 @@ public:
|
||||
points. */
|
||||
class DGTraceIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
protected:
|
||||
Coefficient *rho;
|
||||
VectorCoefficient *u;
|
||||
double alpha, beta;
|
||||
|
||||
private:
|
||||
Vector shape1, shape2;
|
||||
|
||||
public:
|
||||
@@ -2445,7 +2510,7 @@ public:
|
||||
class ScalarProductInterpolator : public DiscreteInterpolator
|
||||
{
|
||||
public:
|
||||
ScalarProductInterpolator(Coefficient & sc) : Q(sc) { }
|
||||
ScalarProductInterpolator(Coefficient & sc) : Q(&sc) { }
|
||||
|
||||
virtual void AssembleElementMatrix2(const FiniteElement &dom_fe,
|
||||
const FiniteElement &ran_fe,
|
||||
@@ -2453,7 +2518,7 @@ public:
|
||||
DenseMatrix &elmat);
|
||||
|
||||
protected:
|
||||
Coefficient &Q;
|
||||
Coefficient *Q;
|
||||
};
|
||||
|
||||
/** Interpolator of a scalar coefficient multiplied by a vector field onto
|
||||
@@ -2463,14 +2528,14 @@ class ScalarVectorProductInterpolator : public DiscreteInterpolator
|
||||
{
|
||||
public:
|
||||
ScalarVectorProductInterpolator(Coefficient & sc)
|
||||
: Q(sc) { }
|
||||
: Q(&sc) { }
|
||||
|
||||
virtual void AssembleElementMatrix2(const FiniteElement &dom_fe,
|
||||
const FiniteElement &ran_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
protected:
|
||||
Coefficient &Q;
|
||||
Coefficient *Q;
|
||||
};
|
||||
|
||||
/** Interpolator of a vector coefficient multiplied by a scalar field onto
|
||||
@@ -2480,14 +2545,14 @@ class VectorScalarProductInterpolator : public DiscreteInterpolator
|
||||
{
|
||||
public:
|
||||
VectorScalarProductInterpolator(VectorCoefficient & vc)
|
||||
: VQ(vc) { }
|
||||
: VQ(&vc) { }
|
||||
|
||||
virtual void AssembleElementMatrix2(const FiniteElement &dom_fe,
|
||||
const FiniteElement &ran_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
protected:
|
||||
VectorCoefficient &VQ;
|
||||
VectorCoefficient *VQ;
|
||||
};
|
||||
|
||||
/** Interpolator of the cross product between a vector coefficient and an
|
||||
@@ -2497,14 +2562,14 @@ class VectorCrossProductInterpolator : public DiscreteInterpolator
|
||||
{
|
||||
public:
|
||||
VectorCrossProductInterpolator(VectorCoefficient & vc)
|
||||
: VQ(vc) { }
|
||||
: VQ(&vc) { }
|
||||
|
||||
virtual void AssembleElementMatrix2(const FiniteElement &nd_fe,
|
||||
const FiniteElement &rt_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
protected:
|
||||
VectorCoefficient &VQ;
|
||||
VectorCoefficient *VQ;
|
||||
};
|
||||
|
||||
/** Interpolator of the inner product between a vector coefficient and an
|
||||
@@ -2513,14 +2578,14 @@ protected:
|
||||
class VectorInnerProductInterpolator : public DiscreteInterpolator
|
||||
{
|
||||
public:
|
||||
VectorInnerProductInterpolator(VectorCoefficient & vc) : VQ(vc) { }
|
||||
VectorInnerProductInterpolator(VectorCoefficient & vc) : VQ(&vc) { }
|
||||
|
||||
virtual void AssembleElementMatrix2(const FiniteElement &rt_fe,
|
||||
const FiniteElement &l2_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
protected:
|
||||
VectorCoefficient &VQ;
|
||||
VectorCoefficient *VQ;
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
@@ -1,80 +0,0 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BILININTEG_EXT
|
||||
#define MFEM_BILININTEG_EXT
|
||||
|
||||
#include "fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// GeometryExtension
|
||||
class GeometryExtension
|
||||
{
|
||||
public:
|
||||
Array<int> eMap;
|
||||
Array<double> nodes;
|
||||
Array<double> X, J, invJ, detJ;
|
||||
static GeometryExtension* Get(const FiniteElementSpace&,
|
||||
const IntegrationRule&);
|
||||
static GeometryExtension* Get(const FiniteElementSpace&,
|
||||
const IntegrationRule&,
|
||||
const Vector&);
|
||||
static void ReorderByVDim(const GridFunction*);
|
||||
static void ReorderByNodes(const GridFunction*);
|
||||
};
|
||||
|
||||
/// DofToQuad
|
||||
class DofToQuad
|
||||
{
|
||||
private:
|
||||
std::string hash;
|
||||
public:
|
||||
~DofToQuad();
|
||||
void operator=(DofToQuad&);
|
||||
void operator=(DofToQuad const&);
|
||||
public:
|
||||
Array<double> W, B, G, Bt, Gt;
|
||||
public:
|
||||
static DofToQuad* Get(const FiniteElementSpace&,
|
||||
const IntegrationRule&,
|
||||
const bool = false);
|
||||
static DofToQuad* Get(const FiniteElementSpace&,
|
||||
const FiniteElementSpace&,
|
||||
const IntegrationRule&,
|
||||
const bool = false);
|
||||
static DofToQuad* Get(const FiniteElement&,
|
||||
const FiniteElement&,
|
||||
const IntegrationRule&,
|
||||
const bool = false);
|
||||
static DofToQuad* GetTensorMaps(const FiniteElement&,
|
||||
const FiniteElement&,
|
||||
const IntegrationRule&,
|
||||
const bool = false);
|
||||
static DofToQuad* GetD2QTensorMaps(const FiniteElement&,
|
||||
const IntegrationRule&,
|
||||
const bool = false);
|
||||
static DofToQuad* GetSimplexMaps(const FiniteElement&,
|
||||
const IntegrationRule&,
|
||||
const bool = false);
|
||||
static DofToQuad* GetSimplexMaps(const FiniteElement&,
|
||||
const FiniteElement&,
|
||||
const IntegrationRule&,
|
||||
const bool = false);
|
||||
static DofToQuad* GetD2QSimplexMaps(const FiniteElement&,
|
||||
const IntegrationRule&,
|
||||
const bool = false);
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,789 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../general/forall.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
|
||||
using namespace std;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// PA Mass Integrator
|
||||
|
||||
// PA Mass Assemble kernel
|
||||
void MassIntegrator::AssemblePA(const FiniteElementSpace &fes)
|
||||
{
|
||||
// Assuming the same element type
|
||||
Mesh *mesh = fes.GetMesh();
|
||||
if (mesh->GetNE() == 0) { return; }
|
||||
const FiniteElement &el = *fes.GetFE(0);
|
||||
ElementTransformation *T = mesh->GetElementTransformation(0);
|
||||
const IntegrationRule *ir = IntRule ? IntRule : &GetRule(el, el, *T);
|
||||
dim = mesh->Dimension();
|
||||
ne = fes.GetMesh()->GetNE();
|
||||
nq = ir->GetNPoints();
|
||||
geom = mesh->GetGeometricFactors(*ir, GeometricFactors::COORDINATES |
|
||||
GeometricFactors::JACOBIANS);
|
||||
maps = &el.GetDofToQuad(*ir, DofToQuad::TENSOR);
|
||||
dofs1D = maps->ndof;
|
||||
quad1D = maps->nqpt;
|
||||
pa_data.SetSize(ne*nq, Device::GetMemoryType());
|
||||
ConstantCoefficient *const_coeff = dynamic_cast<ConstantCoefficient*>(Q);
|
||||
// TODO: other types of coefficients ...
|
||||
if (dim==1) { MFEM_ABORT("Not supported yet... stay tuned!"); }
|
||||
if (dim==2)
|
||||
{
|
||||
double constant = 0.0;
|
||||
if (const_coeff)
|
||||
{
|
||||
constant = const_coeff->constant;
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Coefficient type not supported");
|
||||
}
|
||||
const int NE = ne;
|
||||
const int NQ = nq;
|
||||
auto w = ir->GetWeights().Read();
|
||||
auto J = Reshape(geom->J.Read(), NQ,2,2,NE);
|
||||
auto v = Reshape(pa_data.Write(), NQ, NE);
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
for (int q = 0; q < NQ; ++q)
|
||||
{
|
||||
const double J11 = J(q,0,0,e);
|
||||
const double J12 = J(q,1,0,e);
|
||||
const double J21 = J(q,0,1,e);
|
||||
const double J22 = J(q,1,1,e);
|
||||
const double detJ = (J11*J22)-(J21*J12);
|
||||
v(q,e) = w[q] * constant * detJ;
|
||||
}
|
||||
});
|
||||
}
|
||||
if (dim==3)
|
||||
{
|
||||
double constant = 0.0;
|
||||
if (const_coeff)
|
||||
{
|
||||
constant = const_coeff->constant;
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Coefficient type not supported");
|
||||
}
|
||||
const int NE = ne;
|
||||
const int NQ = nq;
|
||||
auto W = ir->GetWeights().Read();
|
||||
auto J = Reshape(geom->J.Read(), NQ,3,3,NE);
|
||||
auto v = Reshape(pa_data.Write(), NQ,NE);
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
for (int q = 0; q < NQ; ++q)
|
||||
{
|
||||
const double J11 = J(q,0,0,e), J12 = J(q,0,1,e), J13 = J(q,0,2,e);
|
||||
const double J21 = J(q,1,0,e), J22 = J(q,1,1,e), J23 = J(q,1,2,e);
|
||||
const double J31 = J(q,2,0,e), J32 = J(q,2,1,e), J33 = J(q,2,2,e);
|
||||
const double detJ = J11 * (J22 * J33 - J32 * J23) -
|
||||
/* */ J21 * (J12 * J33 - J32 * J13) +
|
||||
/* */ J31 * (J12 * J23 - J22 * J13);
|
||||
v(q,e) = W[q] * constant * detJ;
|
||||
}
|
||||
});
|
||||
}
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
// OCCA PA Mass Apply 2D kernel
|
||||
static void OccaPAMassApply2D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const Array<double> &B,
|
||||
const Array<double> &Bt,
|
||||
const Vector &op,
|
||||
const Vector &x,
|
||||
Vector &y)
|
||||
{
|
||||
occa::properties props;
|
||||
props["defines/D1D"] = D1D;
|
||||
props["defines/Q1D"] = Q1D;
|
||||
const occa::memory o_B = OccaMemoryRead(B.GetMemory(), B.Size());
|
||||
const occa::memory o_Bt = OccaMemoryRead(Bt.GetMemory(), Bt.Size());
|
||||
const occa::memory o_op = OccaMemoryRead(op.GetMemory(), op.Size());
|
||||
const occa::memory o_x = OccaMemoryRead(x.GetMemory(), x.Size());
|
||||
occa::memory o_y = OccaMemoryReadWrite(y.GetMemory(), y.Size());
|
||||
const occa_id_t id = std::make_pair(D1D,Q1D);
|
||||
if (!Device::Allows(Backend::OCCA_CUDA))
|
||||
{
|
||||
static occa_kernel_t OccaMassApply2D_cpu;
|
||||
if (OccaMassApply2D_cpu.find(id) == OccaMassApply2D_cpu.end())
|
||||
{
|
||||
const occa::kernel MassApply2D_CPU =
|
||||
mfem::OccaDev().buildKernel("occa://mfem/fem/occa.okl",
|
||||
"MassApply2D_CPU", props);
|
||||
OccaMassApply2D_cpu.emplace(id, MassApply2D_CPU);
|
||||
}
|
||||
OccaMassApply2D_cpu.at(id)(NE, o_B, o_Bt, o_op, o_x, o_y);
|
||||
}
|
||||
else
|
||||
{
|
||||
static occa_kernel_t OccaMassApply2D_gpu;
|
||||
if (OccaMassApply2D_gpu.find(id) == OccaMassApply2D_gpu.end())
|
||||
{
|
||||
const occa::kernel MassApply2D_GPU =
|
||||
mfem::OccaDev().buildKernel("occa://mfem/fem/occa.okl",
|
||||
"MassApply2D_GPU", props);
|
||||
OccaMassApply2D_gpu.emplace(id, MassApply2D_GPU);
|
||||
}
|
||||
OccaMassApply2D_gpu.at(id)(NE, o_B, o_Bt, o_op, o_x, o_y);
|
||||
}
|
||||
}
|
||||
|
||||
// OCCA PA Mass Apply 3D kernel
|
||||
static void OccaPAMassApply3D(const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const Array<double> &B,
|
||||
const Array<double> &Bt,
|
||||
const Vector &op,
|
||||
const Vector &x,
|
||||
Vector &y)
|
||||
{
|
||||
occa::properties props;
|
||||
props["defines/D1D"] = D1D;
|
||||
props["defines/Q1D"] = Q1D;
|
||||
const occa::memory o_B = OccaMemoryRead(B.GetMemory(), B.Size());
|
||||
const occa::memory o_Bt = OccaMemoryRead(Bt.GetMemory(), Bt.Size());
|
||||
const occa::memory o_op = OccaMemoryRead(op.GetMemory(), op.Size());
|
||||
const occa::memory o_x = OccaMemoryRead(x.GetMemory(), x.Size());
|
||||
occa::memory o_y = OccaMemoryReadWrite(y.GetMemory(), y.Size());
|
||||
const occa_id_t id = std::make_pair(D1D,Q1D);
|
||||
if (!Device::Allows(Backend::OCCA_CUDA))
|
||||
{
|
||||
static occa_kernel_t OccaMassApply3D_cpu;
|
||||
if (OccaMassApply3D_cpu.find(id) == OccaMassApply3D_cpu.end())
|
||||
{
|
||||
const occa::kernel MassApply3D_CPU =
|
||||
mfem::OccaDev().buildKernel("occa://mfem/fem/occa.okl",
|
||||
"MassApply3D_CPU", props);
|
||||
OccaMassApply3D_cpu.emplace(id, MassApply3D_CPU);
|
||||
}
|
||||
OccaMassApply3D_cpu.at(id)(NE, o_B, o_Bt, o_op, o_x, o_y);
|
||||
}
|
||||
else
|
||||
{
|
||||
static occa_kernel_t OccaMassApply3D_gpu;
|
||||
if (OccaMassApply3D_gpu.find(id) == OccaMassApply3D_gpu.end())
|
||||
{
|
||||
const occa::kernel MassApply3D_GPU =
|
||||
mfem::OccaDev().buildKernel("occa://mfem/fem/occa.okl",
|
||||
"MassApply3D_GPU", props);
|
||||
OccaMassApply3D_gpu.emplace(id, MassApply3D_GPU);
|
||||
}
|
||||
OccaMassApply3D_gpu.at(id)(NE, o_B, o_Bt, o_op, o_x, o_y);
|
||||
}
|
||||
}
|
||||
#endif // MFEM_USE_OCCA
|
||||
|
||||
template<const int T_D1D = 0,
|
||||
const int T_Q1D = 0>
|
||||
static void PAMassApply2D(const int NE,
|
||||
const Array<double> &B_,
|
||||
const Array<double> &Bt_,
|
||||
const Vector &op_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(B_.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(Bt_.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d; // nvcc workaround
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
// the following variables are evaluated at compile time
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double sol_xy[max_Q1D][max_Q1D];
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] = 0.0;
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
double sol_x[max_Q1D];
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
sol_x[qy] = 0.0;
|
||||
}
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
const double s = x(dx,dy,e);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_x[qx] += B(qx,dx)* s;
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const double d2q = B(qy,dy);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] += d2q * sol_x[qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] *= op(qx,qy,e);
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
double sol_x[max_D1D];
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_x[dx] = 0.0;
|
||||
}
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const double s = sol_xy[qy][qx];
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_x[dx] += Bt(dx,qx) * s;
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
const double q2d = Bt(dy,qy);
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
y(dx,dy,e) += q2d * sol_x[dx];
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<const int T_D1D = 0,
|
||||
const int T_Q1D = 0,
|
||||
const int T_NBZ = 0>
|
||||
static void SmemPAMassApply2D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Array<double> &bt_,
|
||||
const Vector &op_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= MD1, "");
|
||||
MFEM_VERIFY(Q1D <= MQ1, "");
|
||||
auto b = Reshape(b_.Read(), Q1D, D1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, NE);
|
||||
MFEM_FORALL_2D(e, NE, Q1D, Q1D, NBZ,
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int NBZ = T_NBZ ? T_NBZ : 1;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
MFEM_SHARED double BBt[MQ1*MD1];
|
||||
double (*B)[MD1] = (double (*)[MD1]) BBt;
|
||||
double (*Bt)[MQ1] = (double (*)[MQ1]) BBt;
|
||||
MFEM_SHARED double sm0[NBZ][MDQ*MDQ];
|
||||
MFEM_SHARED double sm1[NBZ][MDQ*MDQ];
|
||||
double (*X)[MD1] = (double (*)[MD1]) (sm0 + tidz);
|
||||
double (*DQ)[MQ1] = (double (*)[MQ1]) (sm1 + tidz);
|
||||
double (*QQ)[MQ1] = (double (*)[MQ1]) (sm0 + tidz);
|
||||
double (*QD)[MD1] = (double (*)[MD1]) (sm1 + tidz);
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
X[dy][dx] = x(dx,dy,e);
|
||||
}
|
||||
}
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(d,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
B[q][d] = b(q,d);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double dq = 0.0;
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
dq += X[dy][dx] * B[qx][dx];
|
||||
}
|
||||
DQ[dy][qx] = dq;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double qq = 0.0;
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
qq += DQ[dy][qx] * B[qy][dy];
|
||||
}
|
||||
QQ[qy][qx] = qq * op(qx, qy, e);
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(d,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
Bt[d][q] = b(q,d);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double dq = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
dq += QQ[qy][qx] * Bt[dx][qx];
|
||||
}
|
||||
QD[qy][dx] = dq;
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double dd = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
dd += (QD[qy][dx] * Bt[dy][qy]);
|
||||
}
|
||||
y(dx, dy, e) += dd;
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<const int T_D1D = 0,
|
||||
const int T_Q1D = 0>
|
||||
static void PAMassApply3D(const int NE,
|
||||
const Array<double> &B_,
|
||||
const Array<double> &Bt_,
|
||||
const Vector &op_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
MFEM_VERIFY(D1D <= MAX_D1D, "");
|
||||
MFEM_VERIFY(Q1D <= MAX_Q1D, "");
|
||||
auto B = Reshape(B_.Read(), Q1D, D1D);
|
||||
auto Bt = Reshape(Bt_.Read(), D1D, Q1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int max_D1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int max_Q1D = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
double sol_xyz[max_Q1D][max_Q1D][max_Q1D];
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xyz[qz][qy][qx] = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
double sol_xy[max_Q1D][max_Q1D];
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] = 0.0;
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
double sol_x[max_Q1D];
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_x[qx] = 0;
|
||||
}
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
const double s = x(dx,dy,dz,e);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_x[qx] += B(qx,dx) * s;
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
const double wy = B(qy,dy);
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xy[qy][qx] += wy * sol_x[qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
const double wz = B(qz,dz);
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xyz[qz][qy][qx] += wz * sol_xy[qy][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
sol_xyz[qz][qy][qx] *= op(qx,qy,qz,e);
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
double sol_xy[max_D1D][max_D1D];
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_xy[dy][dx] = 0;
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
double sol_x[max_D1D];
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_x[dx] = 0;
|
||||
}
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
const double s = sol_xyz[qz][qy][qx];
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_x[dx] += Bt(dx,qx) * s;
|
||||
}
|
||||
}
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
const double wy = Bt(dy,qy);
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
sol_xy[dy][dx] += wy * sol_x[dx];
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
const double wz = Bt(dz,qz);
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
y(dx,dy,dz,e) += wz * sol_xy[dy][dx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<const int T_D1D = 0,
|
||||
const int T_Q1D = 0>
|
||||
static void SmemPAMassApply3D(const int NE,
|
||||
const Array<double> &b_,
|
||||
const Array<double> &bt_,
|
||||
const Vector &op_,
|
||||
const Vector &x_,
|
||||
Vector &y_,
|
||||
const int d1d = 0,
|
||||
const int q1d = 0)
|
||||
{
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int M1Q = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int M1D = T_D1D ? T_D1D : MAX_D1D;
|
||||
MFEM_VERIFY(D1D <= M1D, "");
|
||||
MFEM_VERIFY(Q1D <= M1Q, "");
|
||||
auto b = Reshape(b_.Read(), Q1D, D1D);
|
||||
auto op = Reshape(op_.Read(), Q1D, Q1D, Q1D, NE);
|
||||
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
|
||||
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
|
||||
MFEM_FORALL_3D(e, NE, Q1D, Q1D, Q1D,
|
||||
{
|
||||
const int tidz = MFEM_THREAD_ID(z);
|
||||
const int D1D = T_D1D ? T_D1D : d1d;
|
||||
const int Q1D = T_Q1D ? T_Q1D : q1d;
|
||||
constexpr int MQ1 = T_Q1D ? T_Q1D : MAX_Q1D;
|
||||
constexpr int MD1 = T_D1D ? T_D1D : MAX_D1D;
|
||||
constexpr int MDQ = (MQ1 > MD1) ? MQ1 : MD1;
|
||||
MFEM_SHARED double sDQ[MQ1*MD1];
|
||||
double (*B)[MD1] = (double (*)[MD1]) sDQ;
|
||||
double (*Bt)[MQ1] = (double (*)[MQ1]) sDQ;
|
||||
MFEM_SHARED double sm0[MDQ*MDQ*MDQ];
|
||||
MFEM_SHARED double sm1[MDQ*MDQ*MDQ];
|
||||
double (*X)[MD1][MD1] = (double (*)[MD1][MD1]) sm0;
|
||||
double (*DDQ)[MD1][MQ1] = (double (*)[MD1][MQ1]) sm1;
|
||||
double (*DQQ)[MQ1][MQ1] = (double (*)[MQ1][MQ1]) sm0;
|
||||
double (*QQQ)[MQ1][MQ1] = (double (*)[MQ1][MQ1]) sm1;
|
||||
double (*QQD)[MQ1][MD1] = (double (*)[MQ1][MD1]) sm0;
|
||||
double (*QDD)[MD1][MD1] = (double (*)[MD1][MD1]) sm1;
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
X[dz][dy][dx] = x(dx,dy,dz,e);
|
||||
}
|
||||
}
|
||||
}
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(d,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
B[q][d] = b(q,d);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double u = 0.0;
|
||||
for (int dx = 0; dx < D1D; ++dx)
|
||||
{
|
||||
u += X[dz][dy][dx] * B[qx][dx];
|
||||
}
|
||||
DDQ[dz][dy][qx] = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double u = 0.0;
|
||||
for (int dy = 0; dy < D1D; ++dy)
|
||||
{
|
||||
u += DDQ[dz][dy][qx] * B[qy][dy];
|
||||
}
|
||||
DQQ[dz][qy][qx] = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qx,x,Q1D)
|
||||
{
|
||||
double u = 0.0;
|
||||
for (int dz = 0; dz < D1D; ++dz)
|
||||
{
|
||||
u += DQQ[dz][qy][qx] * B[qz][dz];
|
||||
}
|
||||
QQQ[qz][qy][qx] = u * op(qx,qy,qz,e);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
if (tidz == 0)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(d,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(q,x,Q1D)
|
||||
{
|
||||
Bt[d][q] = b(q,d);
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(qy,y,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double u = 0.0;
|
||||
for (int qx = 0; qx < Q1D; ++qx)
|
||||
{
|
||||
u += QQQ[qz][qy][qx] * Bt[dx][qx];
|
||||
}
|
||||
QQD[qz][qy][dx] = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(qz,z,Q1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double u = 0.0;
|
||||
for (int qy = 0; qy < Q1D; ++qy)
|
||||
{
|
||||
u += QQD[qz][qy][dx] * Bt[dy][qy];
|
||||
}
|
||||
QDD[qz][dy][dx] = u;
|
||||
}
|
||||
}
|
||||
}
|
||||
MFEM_SYNC_THREAD;
|
||||
MFEM_FOREACH_THREAD(dz,z,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dy,y,D1D)
|
||||
{
|
||||
MFEM_FOREACH_THREAD(dx,x,D1D)
|
||||
{
|
||||
double u = 0.0;
|
||||
for (int qz = 0; qz < Q1D; ++qz)
|
||||
{
|
||||
u += QDD[qz][dy][dx] * Bt[dz][qz];
|
||||
}
|
||||
y(dx,dy,dz,e) += u;
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
static void PAMassApply(const int dim,
|
||||
const int D1D,
|
||||
const int Q1D,
|
||||
const int NE,
|
||||
const Array<double> &B,
|
||||
const Array<double> &Bt,
|
||||
const Vector &op,
|
||||
const Vector &x,
|
||||
Vector &y)
|
||||
{
|
||||
#ifdef MFEM_USE_OCCA
|
||||
if (DeviceCanUseOcca())
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
OccaPAMassApply2D(D1D, Q1D, NE, B, Bt, op, x, y);
|
||||
return;
|
||||
}
|
||||
if (dim == 3)
|
||||
{
|
||||
OccaPAMassApply3D(D1D, Q1D, NE, B, Bt, op, x, y);
|
||||
return;
|
||||
}
|
||||
MFEM_ABORT("OCCA PA Mass Apply unknown kernel!");
|
||||
}
|
||||
#endif // MFEM_USE_OCCA
|
||||
if (dim == 2)
|
||||
{
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x22: return SmemPAMassApply2D<2,2,16>(NE, B, Bt, op, x, y);
|
||||
case 0x33: return SmemPAMassApply2D<3,3,16>(NE, B, Bt, op, x, y);
|
||||
case 0x44: return SmemPAMassApply2D<4,4,8>(NE, B, Bt, op, x, y);
|
||||
case 0x55: return SmemPAMassApply2D<5,5,8>(NE, B, Bt, op, x, y);
|
||||
case 0x66: return SmemPAMassApply2D<6,6,4>(NE, B, Bt, op, x, y);
|
||||
case 0x77: return SmemPAMassApply2D<7,7,4>(NE, B, Bt, op, x, y);
|
||||
case 0x88: return SmemPAMassApply2D<8,8,2>(NE, B, Bt, op, x, y);
|
||||
case 0x99: return SmemPAMassApply2D<9,9,2>(NE, B, Bt, op, x, y);
|
||||
default: return PAMassApply2D(NE, B, Bt, op, x, y, D1D, Q1D);
|
||||
}
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch ((D1D << 4 ) | Q1D)
|
||||
{
|
||||
case 0x23: return SmemPAMassApply3D<2,3>(NE, B, Bt, op, x, y);
|
||||
case 0x34: return SmemPAMassApply3D<3,4>(NE, B, Bt, op, x, y);
|
||||
case 0x45: return SmemPAMassApply3D<4,5>(NE, B, Bt, op, x, y);
|
||||
case 0x56: return SmemPAMassApply3D<5,6>(NE, B, Bt, op, x, y);
|
||||
case 0x67: return SmemPAMassApply3D<6,7>(NE, B, Bt, op, x, y);
|
||||
case 0x78: return SmemPAMassApply3D<7,8>(NE, B, Bt, op, x, y);
|
||||
case 0x89: return SmemPAMassApply3D<8,9>(NE, B, Bt, op, x, y);
|
||||
default: return PAMassApply3D(NE, B, Bt, op, x, y, D1D, Q1D);
|
||||
}
|
||||
}
|
||||
MFEM_ABORT("Unknown kernel.");
|
||||
}
|
||||
|
||||
void MassIntegrator::AddMultPA(const Vector &x, Vector &y) const
|
||||
{
|
||||
PAMassApply(dim, dofs1D, quad1D, ne, maps->B, maps->Bt, pa_data, x, y);
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
+20
-12
@@ -28,11 +28,6 @@ double PWConstCoefficient::Eval(ElementTransformation & T,
|
||||
return (constants(att-1));
|
||||
}
|
||||
|
||||
DeviceFunctionCoefficientPtr FunctionCoefficient::GetDeviceFunction()
|
||||
{
|
||||
return DeviceFunction;
|
||||
}
|
||||
|
||||
double FunctionCoefficient::Eval(ElementTransformation & T,
|
||||
const IntegrationPoint & ip)
|
||||
{
|
||||
@@ -45,10 +40,6 @@ double FunctionCoefficient::Eval(ElementTransformation & T,
|
||||
{
|
||||
return ((*Function)(transip));
|
||||
}
|
||||
else if (DeviceFunction)
|
||||
{
|
||||
return ((*DeviceFunction)(Vector3(x)));
|
||||
}
|
||||
else
|
||||
{
|
||||
return (*TDFunction)(transip, GetTime());
|
||||
@@ -134,19 +125,27 @@ void VectorFunctionCoefficient::Eval(Vector &V, ElementTransformation &T,
|
||||
}
|
||||
|
||||
VectorArrayCoefficient::VectorArrayCoefficient (int dim)
|
||||
: VectorCoefficient(dim), Coeff(dim)
|
||||
: VectorCoefficient(dim), Coeff(dim), ownCoeff(dim)
|
||||
{
|
||||
for (int i = 0; i < dim; i++)
|
||||
{
|
||||
Coeff[i] = NULL;
|
||||
ownCoeff[i] = true;
|
||||
}
|
||||
}
|
||||
|
||||
void VectorArrayCoefficient::Set(int i, Coefficient *c, bool own)
|
||||
{
|
||||
if (ownCoeff[i]) { delete Coeff[i]; }
|
||||
Coeff[i] = c;
|
||||
ownCoeff[i] = own;
|
||||
}
|
||||
|
||||
VectorArrayCoefficient::~VectorArrayCoefficient()
|
||||
{
|
||||
for (int i = 0; i < vdim; i++)
|
||||
{
|
||||
delete Coeff[i];
|
||||
if (ownCoeff[i]) { delete Coeff[i]; }
|
||||
}
|
||||
}
|
||||
|
||||
@@ -318,17 +317,26 @@ MatrixArrayCoefficient::MatrixArrayCoefficient (int dim)
|
||||
: MatrixCoefficient (dim)
|
||||
{
|
||||
Coeff.SetSize(height*width);
|
||||
ownCoeff.SetSize(height*width);
|
||||
for (int i = 0; i < (height*width); i++)
|
||||
{
|
||||
Coeff[i] = NULL;
|
||||
ownCoeff[i] = true;
|
||||
}
|
||||
}
|
||||
|
||||
void MatrixArrayCoefficient::Set(int i, int j, Coefficient * c, bool own)
|
||||
{
|
||||
if (ownCoeff[i*width+j]) { delete Coeff[i*width+j]; }
|
||||
Coeff[i*width+j] = c;
|
||||
ownCoeff[i*width+j] = own;
|
||||
}
|
||||
|
||||
MatrixArrayCoefficient::~MatrixArrayCoefficient ()
|
||||
{
|
||||
for (int i=0; i < height*width; i++)
|
||||
{
|
||||
delete Coeff[i];
|
||||
if (ownCoeff[i]) { delete Coeff[i]; }
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
+8
-22
@@ -112,7 +112,6 @@ public:
|
||||
const IntegrationPoint &ip);
|
||||
};
|
||||
|
||||
typedef double (*DeviceFunctionCoefficientPtr)(const Vector3&);
|
||||
|
||||
/// class for C-function coefficient
|
||||
class FunctionCoefficient : public Coefficient
|
||||
@@ -120,7 +119,6 @@ class FunctionCoefficient : public Coefficient
|
||||
protected:
|
||||
double (*Function)(const Vector &);
|
||||
double (*TDFunction)(const Vector &, double);
|
||||
double (*DeviceFunction)(const Vector3&);
|
||||
|
||||
public:
|
||||
/// Define a time-independent coefficient from a C-function
|
||||
@@ -128,7 +126,6 @@ public:
|
||||
{
|
||||
Function = f;
|
||||
TDFunction = NULL;
|
||||
DeviceFunction = NULL;
|
||||
}
|
||||
|
||||
/// Define a time-dependent coefficient from a C-function
|
||||
@@ -136,16 +133,6 @@ public:
|
||||
{
|
||||
Function = NULL;
|
||||
TDFunction = tdf;
|
||||
DeviceFunction = NULL;
|
||||
}
|
||||
|
||||
/// Define a time-independent coefficient from a C-function using
|
||||
/// Vector3 instead of a Vector.
|
||||
FunctionCoefficient(double (*df)(const Vector3 &))
|
||||
{
|
||||
Function = NULL;
|
||||
TDFunction = NULL;
|
||||
DeviceFunction = df;
|
||||
}
|
||||
|
||||
/// (DEPRECATED) Define a time-independent coefficient from a C-function
|
||||
@@ -155,7 +142,6 @@ public:
|
||||
{
|
||||
Function = reinterpret_cast<double(*)(const Vector&)>(f);
|
||||
TDFunction = NULL;
|
||||
DeviceFunction = NULL;
|
||||
}
|
||||
|
||||
/// (DEPRECATED) Define a time-dependent coefficient from a C-function
|
||||
@@ -165,17 +151,11 @@ public:
|
||||
{
|
||||
Function = NULL;
|
||||
TDFunction = reinterpret_cast<double(*)(const Vector&,double)>(tdf);
|
||||
DeviceFunction = NULL;
|
||||
}
|
||||
|
||||
/// Evaluate coefficient
|
||||
virtual double Eval(ElementTransformation &T,
|
||||
const IntegrationPoint &ip);
|
||||
|
||||
/// Return the coefficient's C-function that uses Vector3.
|
||||
/// Warning: for now, the returned function can only be used on the
|
||||
/// host inside a MFEM_FORALL.
|
||||
DeviceFunctionCoefficientPtr GetDeviceFunction();
|
||||
};
|
||||
|
||||
class GridFunction;
|
||||
@@ -389,6 +369,7 @@ class VectorArrayCoefficient : public VectorCoefficient
|
||||
{
|
||||
private:
|
||||
Array<Coefficient*> Coeff;
|
||||
Array<bool> ownCoeff;
|
||||
|
||||
public:
|
||||
/// Construct vector of dim coefficients.
|
||||
@@ -400,7 +381,7 @@ public:
|
||||
Coefficient **GetCoeffs() { return Coeff; }
|
||||
|
||||
/// Sets coefficient in the vector.
|
||||
void Set(int i, Coefficient *c) { delete Coeff[i]; Coeff[i] = c; }
|
||||
void Set(int i, Coefficient *c, bool own=true);
|
||||
|
||||
/// Evaluates i'th component of the vector.
|
||||
double Eval(int i, ElementTransformation &T, const IntegrationPoint &ip)
|
||||
@@ -520,9 +501,13 @@ public:
|
||||
void SetDeltaCoefficient(const DeltaCoefficient& _d) { d = _d; }
|
||||
/// Return the associated scalar DeltaCoefficient.
|
||||
DeltaCoefficient& GetDeltaCoefficient() { return d; }
|
||||
|
||||
void SetScale(double s) { d.SetScale(s); }
|
||||
void SetDirection(const Vector& _d);
|
||||
|
||||
void SetDeltaCenter(const Vector& center) { d.SetDeltaCenter(center); }
|
||||
void GetDeltaCenter(Vector& center) { d.GetDeltaCenter(center); }
|
||||
|
||||
/** @brief Return the specified direction vector multiplied by the value
|
||||
returned by DeltaCoefficient::EvalDelta() of the associated scalar
|
||||
DeltaCoefficient. */
|
||||
@@ -648,6 +633,7 @@ class MatrixArrayCoefficient : public MatrixCoefficient
|
||||
{
|
||||
private:
|
||||
Array<Coefficient *> Coeff;
|
||||
Array<bool> ownCoeff;
|
||||
|
||||
public:
|
||||
|
||||
@@ -655,7 +641,7 @@ public:
|
||||
|
||||
Coefficient* GetCoeff (int i, int j) { return Coeff[i*width+j]; }
|
||||
|
||||
void Set(int i, int j, Coefficient * c) { delete Coeff[i*width+j]; Coeff[i*width+j] = c; }
|
||||
void Set(int i, int j, Coefficient * c, bool own=true);
|
||||
|
||||
double Eval(int i, int j, ElementTransformation &T, const IntegrationPoint &ip)
|
||||
{ return Coeff[i*width+j] ? Coeff[i*width+j] -> Eval(T, ip, GetTime()) : 0.0; }
|
||||
|
||||
+17
-4
@@ -108,6 +108,7 @@ DataCollection::DataCollection(const std::string& collection_name, Mesh *mesh_)
|
||||
precision = precision_default;
|
||||
pad_digits_cycle = pad_digits_rank = pad_digits_default;
|
||||
format = SERIAL_FORMAT; // use serial mesh format
|
||||
compression = false;
|
||||
error = NO_ERROR;
|
||||
}
|
||||
|
||||
@@ -161,6 +162,14 @@ void DataCollection::SetFormat(int fmt)
|
||||
format = fmt;
|
||||
}
|
||||
|
||||
void DataCollection::SetCompression(bool comp)
|
||||
{
|
||||
compression = comp;
|
||||
#ifdef MFEM_USE_GZSTREAM
|
||||
MFEM_ASSERT(!compression, "GZStream not enabled in MFEM build.");
|
||||
#endif
|
||||
}
|
||||
|
||||
void DataCollection::SetPrefixPath(const std::string& prefix)
|
||||
{
|
||||
if (!prefix.empty())
|
||||
@@ -219,7 +228,8 @@ void DataCollection::SaveMesh()
|
||||
}
|
||||
|
||||
std::string mesh_name = GetMeshFileName();
|
||||
std::ofstream mesh_file(mesh_name.c_str());
|
||||
const char *mode = (compression) ? "zwb6" : "w";
|
||||
ofgzstream mesh_file(mesh_name.c_str(), mode);
|
||||
mesh_file.precision(precision);
|
||||
#ifdef MFEM_USE_MPI
|
||||
const ParMesh *pmesh = dynamic_cast<const ParMesh*>(mesh);
|
||||
@@ -267,7 +277,9 @@ const
|
||||
|
||||
void DataCollection::SaveOneField(const FieldMapIterator &it)
|
||||
{
|
||||
std::ofstream field_file(GetFieldFileName(it->first).c_str());
|
||||
const char *mode = (compression) ? "zwb6" : "w";
|
||||
ofgzstream field_file(GetFieldFileName(it->first).c_str(), mode);
|
||||
|
||||
field_file.precision(precision);
|
||||
(it->second)->Save(field_file);
|
||||
if (!field_file)
|
||||
@@ -279,7 +291,8 @@ void DataCollection::SaveOneField(const FieldMapIterator &it)
|
||||
|
||||
void DataCollection::SaveOneQField(const QFieldMapIterator &it)
|
||||
{
|
||||
std::ofstream q_field_file(GetFieldFileName(it->first).c_str());
|
||||
const char *mode = (compression) ? "zwb6" : "w";
|
||||
ofgzstream q_field_file(GetFieldFileName(it->first).c_str(), mode);
|
||||
q_field_file.precision(precision);
|
||||
(it->second)->Save(q_field_file);
|
||||
if (!q_field_file)
|
||||
@@ -576,7 +589,7 @@ void VisItDataCollection::LoadFields()
|
||||
it != field_info_map.end(); ++it)
|
||||
{
|
||||
std::string fname = path_left + it->first + path_right;
|
||||
std::ifstream file(fname.c_str());
|
||||
ifgzstream file(fname.c_str());
|
||||
// TODO: in parallel, check for errors on all processors
|
||||
if (!file)
|
||||
{
|
||||
|
||||
@@ -205,6 +205,7 @@ protected:
|
||||
|
||||
/// Output mesh format: see the #Format enumeration
|
||||
int format;
|
||||
bool compression;
|
||||
|
||||
/// Should the collection delete its mesh and fields
|
||||
bool own_data;
|
||||
@@ -346,6 +347,9 @@ public:
|
||||
validation. */
|
||||
virtual void SetFormat(int fmt);
|
||||
|
||||
/// Set the flag for use of gz compressed files
|
||||
void SetCompression(bool comp);
|
||||
|
||||
/// Set the path where the DataCollection will be saved.
|
||||
void SetPrefixPath(const std::string &prefix);
|
||||
|
||||
|
||||
+105
@@ -203,6 +203,22 @@ void FiniteElement::CalcPhysDShape(ElementTransformation &Trans,
|
||||
Mult(vshape, Trans.InverseJacobian(), dshape);
|
||||
}
|
||||
|
||||
const DofToQuad &FiniteElement::GetDofToQuad(const IntegrationRule &,
|
||||
DofToQuad::Mode) const
|
||||
{
|
||||
mfem_error("FiniteElement::GetDofToQuad(...) is not implemented for "
|
||||
"this element!");
|
||||
return *dof2quad_array[0]; // suppress a warning
|
||||
}
|
||||
|
||||
FiniteElement::~FiniteElement()
|
||||
{
|
||||
for (int i = 0; i < dof2quad_array.Size(); i++)
|
||||
{
|
||||
delete dof2quad_array[i];
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void ScalarFiniteElement::NodalLocalInterpolation (
|
||||
ElementTransformation &Trans, DenseMatrix &I,
|
||||
@@ -278,6 +294,95 @@ void ScalarFiniteElement::ScalarLocalInterpolation(
|
||||
}
|
||||
}
|
||||
|
||||
const DofToQuad &ScalarFiniteElement::GetDofToQuad(const IntegrationRule &ir,
|
||||
DofToQuad::Mode mode) const
|
||||
{
|
||||
MFEM_VERIFY(mode == DofToQuad::FULL, "invalid mode requested");
|
||||
|
||||
for (int i = 0; i < dof2quad_array.Size(); i++)
|
||||
{
|
||||
const DofToQuad &d2q = *dof2quad_array[i];
|
||||
if (d2q.IntRule == &ir && d2q.mode == mode) { return d2q; }
|
||||
}
|
||||
|
||||
DofToQuad *d2q = new DofToQuad;
|
||||
const int nqpt = ir.GetNPoints();
|
||||
d2q->FE = this;
|
||||
d2q->IntRule = &ir;
|
||||
d2q->mode = mode;
|
||||
d2q->ndof = Dof;
|
||||
d2q->nqpt = nqpt;
|
||||
d2q->B.SetSize(nqpt*Dof);
|
||||
d2q->Bt.SetSize(Dof*nqpt);
|
||||
d2q->G.SetSize(nqpt*Dim*Dof);
|
||||
d2q->Gt.SetSize(Dof*nqpt*Dim);
|
||||
#ifdef MFEM_THREAD_SAFE
|
||||
Vector c_shape(Dof);
|
||||
DenseMatrix vshape(Dof, Dim);
|
||||
#endif
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
{
|
||||
const IntegrationPoint &ip = ir.IntPoint(i);
|
||||
CalcShape(ip, c_shape);
|
||||
for (int j = 0; j < Dof; j++)
|
||||
{
|
||||
d2q->B[i+nqpt*j] = d2q->Bt[j+Dof*i] = c_shape(j);
|
||||
}
|
||||
CalcDShape(ip, vshape);
|
||||
for (int d = 0; d < Dim; d++)
|
||||
{
|
||||
for (int j = 0; j < Dof; j++)
|
||||
{
|
||||
d2q->G[i+nqpt*(d+Dim*j)] = d2q->Gt[j+Dof*(i+nqpt*d)] = vshape(j,d);
|
||||
}
|
||||
}
|
||||
}
|
||||
dof2quad_array.Append(d2q);
|
||||
return *d2q;
|
||||
}
|
||||
|
||||
// protected method
|
||||
const DofToQuad &ScalarFiniteElement::GetTensorDofToQuad(
|
||||
const TensorBasisElement &tb,
|
||||
const IntegrationRule &ir, DofToQuad::Mode mode) const
|
||||
{
|
||||
MFEM_VERIFY(mode == DofToQuad::TENSOR, "invalid mode requested");
|
||||
|
||||
for (int i = 0; i < dof2quad_array.Size(); i++)
|
||||
{
|
||||
const DofToQuad &d2q = *dof2quad_array[i];
|
||||
if (d2q.IntRule == &ir && d2q.mode == mode) { return d2q; }
|
||||
}
|
||||
|
||||
DofToQuad *d2q = new DofToQuad;
|
||||
const Poly_1D::Basis &basis_1d = tb.GetBasis1D();
|
||||
const int ndof = Order + 1;
|
||||
const int nqpt = (int)floor(pow(ir.GetNPoints(), 1.0/Dim) + 0.5);
|
||||
d2q->FE = this;
|
||||
d2q->IntRule = &ir;
|
||||
d2q->mode = mode;
|
||||
d2q->ndof = ndof;
|
||||
d2q->nqpt = nqpt;
|
||||
d2q->B.SetSize(nqpt*ndof);
|
||||
d2q->Bt.SetSize(ndof*nqpt);
|
||||
d2q->G.SetSize(nqpt*ndof);
|
||||
d2q->Gt.SetSize(ndof*nqpt);
|
||||
Vector val(ndof), grad(ndof);
|
||||
for (int i = 0; i < nqpt; i++)
|
||||
{
|
||||
// The first 'nqpt' points in 'ir' have the same x-coordinates as those
|
||||
// of the 1D rule.
|
||||
basis_1d.Eval(ir.IntPoint(i).x, val, grad);
|
||||
for (int j = 0; j < ndof; j++)
|
||||
{
|
||||
d2q->B[i+nqpt*j] = d2q->Bt[j+ndof*i] = val(j);
|
||||
d2q->G[i+nqpt*j] = d2q->Gt[j+ndof*i] = grad(j);
|
||||
}
|
||||
}
|
||||
dof2quad_array.Append(d2q);
|
||||
return *d2q;
|
||||
}
|
||||
|
||||
|
||||
void NodalFiniteElement::ProjectCurl_2D(
|
||||
const FiniteElement &fe, ElementTransformation &Trans,
|
||||
|
||||
+124
-2
@@ -116,7 +116,92 @@ public:
|
||||
}
|
||||
};
|
||||
|
||||
// Base and derived classes for finite elements
|
||||
|
||||
/** @brief Structure representing the matrices/tensors needed to evaluate (in
|
||||
reference space) the values, gradients, divergences, or curls of a
|
||||
FiniteElement at a the quadrature points of a given IntegrationRule. */
|
||||
/** Object of this type are typically created and owned by the respective
|
||||
FiniteElement object. */
|
||||
class DofToQuad
|
||||
{
|
||||
public:
|
||||
/// The FiniteElement that created and owns this object.
|
||||
/** This pointer is not owned. */
|
||||
const class FiniteElement *FE;
|
||||
|
||||
/** @brief IntegrationRule that defines the quadrature points at which the
|
||||
basis functions of the #FE are evaluated. */
|
||||
/** This pointer is not owned. */
|
||||
const IntegrationRule *IntRule;
|
||||
|
||||
/// Type of data stored in the arrays #B, #Bt, #G, and #Gt.
|
||||
enum Mode
|
||||
{
|
||||
/** @brief Full multidimensional representation which does not use tensor
|
||||
product structure. The ordering of the degrees of freedom is as
|
||||
defined by #FE */
|
||||
FULL,
|
||||
|
||||
/** @brief Tensor product representation using 1D matrices/tensors with
|
||||
dimensions using 1D number of quadrature points and degrees of
|
||||
freedom. */
|
||||
/** When representing a vector-valued FiniteElement, two DofToQuad objects
|
||||
are used to describe the "closed" and "open" 1D basis functions
|
||||
(TODO). */
|
||||
TENSOR
|
||||
};
|
||||
|
||||
/// Describes the contents of the #B, #Bt, #G, and #Gt arrays, see #Mode.
|
||||
Mode mode;
|
||||
|
||||
/** @brief Number of degrees of freedom = number of basis functions. When
|
||||
#mode is TENSOR, this is the 1D number. */
|
||||
int ndof;
|
||||
|
||||
/** @brief Number of quadrature points. When #mode is TENSOR, this is the 1D
|
||||
number. */
|
||||
int nqpt;
|
||||
|
||||
/// Basis functions evaluated at quadrature points.
|
||||
/** The storage layout is column-major with dimensions:
|
||||
- #nqpt x #ndof, for scalar elements, or
|
||||
- #nqpt x dim x #ndof, for vector elements, (TODO)
|
||||
|
||||
where
|
||||
|
||||
- dim = dimension of the finite element reference space when #mode is
|
||||
FULL, and dim = 1 when #mode is TENSOR. */
|
||||
Array<double> B;
|
||||
|
||||
/// Transpose of #B.
|
||||
/** The storage layout is column-major with dimensions:
|
||||
- #ndof x #nqpt, for scalar elements, or
|
||||
- #ndof x #nqpt x dim, for vector elements (TODO). */
|
||||
Array<double> Bt;
|
||||
|
||||
/** @brief Gradients/divergences/curls of basis functions evaluated at
|
||||
quadrature points. */
|
||||
/** The storage layout is column-major with dimensions:
|
||||
- #nqpt x dim x #ndof, for scalar elements, or
|
||||
- #nqpt x #ndof, for H(div) vector elements (TODO), or
|
||||
- #nqpt x cdim x #ndof, for H(curl) vector elements (TODO),
|
||||
|
||||
where
|
||||
|
||||
- dim = dimension of the finite element reference space when #mode is
|
||||
FULL, and 1 when #mode is TENSOR,
|
||||
- cdim = 1/1/3 in 1D/2D/3D, respectively, when #mode is FULL, and cdim =
|
||||
1 when #mode is TENSOR. */
|
||||
Array<double> G;
|
||||
|
||||
/// Transpose of #G.
|
||||
/** The storage layout is column-major with dimensions:
|
||||
- #ndof x #nqpt x dim, for scalar elements, or
|
||||
- #ndof x #nqpt, for H(div) vector elements (TODO), or
|
||||
- #ndof x #nqpt x cdim, for H(curl) vector elements (TODO). */
|
||||
Array<double> Gt;
|
||||
};
|
||||
|
||||
|
||||
/// Describes the space on each element
|
||||
class FunctionSpace
|
||||
@@ -136,6 +221,10 @@ class VectorCoefficient;
|
||||
class MatrixCoefficient;
|
||||
class KnotVector;
|
||||
|
||||
|
||||
// Base and derived classes for finite elements
|
||||
|
||||
|
||||
/// Abstract class for Finite Elements
|
||||
class FiniteElement
|
||||
{
|
||||
@@ -152,6 +241,10 @@ protected:
|
||||
#ifndef MFEM_THREAD_SAFE
|
||||
mutable DenseMatrix vshape; // Dof x Dim
|
||||
#endif
|
||||
/// Container for all DofToQuad objects created by the FiniteElement.
|
||||
/** Multiple DofToQuad objects may be needed when different quadrature rules
|
||||
or different DofToQuad::Mode are used. */
|
||||
mutable Array<DofToQuad*> dof2quad_array;
|
||||
|
||||
public:
|
||||
/// Enumeration for RangeType and DerivRangeType
|
||||
@@ -417,7 +510,13 @@ public:
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &div) const;
|
||||
|
||||
virtual ~FiniteElement () { }
|
||||
/** Return a DofToQuad structure corresponding to the given IntegrationRule
|
||||
using the given DofToQuad::Mode. */
|
||||
/** See the documentation for DofToQuad for more details. */
|
||||
virtual const DofToQuad &GetDofToQuad(const IntegrationRule &ir,
|
||||
DofToQuad::Mode mode) const;
|
||||
|
||||
virtual ~FiniteElement();
|
||||
|
||||
static bool IsClosedType(int b_type)
|
||||
{
|
||||
@@ -464,6 +563,10 @@ protected:
|
||||
return static_cast<const ScalarFiniteElement &>(fe);
|
||||
}
|
||||
|
||||
const DofToQuad &GetTensorDofToQuad(const class TensorBasisElement &tb,
|
||||
const IntegrationRule &ir,
|
||||
DofToQuad::Mode mode) const;
|
||||
|
||||
public:
|
||||
ScalarFiniteElement(int D, Geometry::Type G, int Do, int O,
|
||||
int F = FunctionSpace::Pk)
|
||||
@@ -494,6 +597,9 @@ public:
|
||||
void ScalarLocalInterpolation(ElementTransformation &Trans,
|
||||
DenseMatrix &I,
|
||||
const ScalarFiniteElement &fine_fe) const;
|
||||
|
||||
virtual const DofToQuad &GetDofToQuad(const IntegrationRule &ir,
|
||||
DofToQuad::Mode mode) const;
|
||||
};
|
||||
|
||||
class NodalFiniteElement : public ScalarFiniteElement
|
||||
@@ -1750,6 +1856,14 @@ class NodalTensorFiniteElement : public NodalFiniteElement,
|
||||
public:
|
||||
NodalTensorFiniteElement(const int dims, const int p, const int btype,
|
||||
const DofMapType dmtype);
|
||||
|
||||
const DofToQuad &GetDofToQuad(const IntegrationRule &ir,
|
||||
DofToQuad::Mode mode) const
|
||||
{
|
||||
return (mode == DofToQuad::FULL) ?
|
||||
ScalarFiniteElement::GetDofToQuad(ir, mode) :
|
||||
ScalarFiniteElement::GetTensorDofToQuad(*this, ir, mode);
|
||||
}
|
||||
};
|
||||
|
||||
class PositiveTensorFiniteElement : public PositiveFiniteElement,
|
||||
@@ -1758,6 +1872,14 @@ class PositiveTensorFiniteElement : public PositiveFiniteElement,
|
||||
public:
|
||||
PositiveTensorFiniteElement(const int dims, const int p,
|
||||
const DofMapType dmtype);
|
||||
|
||||
const DofToQuad &GetDofToQuad(const IntegrationRule &ir,
|
||||
DofToQuad::Mode mode) const
|
||||
{
|
||||
return (mode == DofToQuad::FULL) ?
|
||||
ScalarFiniteElement::GetDofToQuad(ir, mode) :
|
||||
ScalarFiniteElement::GetTensorDofToQuad(*this, ir, mode);
|
||||
}
|
||||
};
|
||||
|
||||
class H1_SegmentElement : public NodalTensorFiniteElement
|
||||
|
||||
+557
-6
@@ -12,6 +12,7 @@
|
||||
// Implementation of FiniteElementSpace
|
||||
|
||||
#include "../general/text.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "../mesh/mesh_headers.hpp"
|
||||
#include "fem.hpp"
|
||||
|
||||
@@ -385,6 +386,7 @@ void FiniteElementSpace::MarkerToList(const Array<int> &marker,
|
||||
Array<int> &list)
|
||||
{
|
||||
int num_marked = 0;
|
||||
marker.HostRead(); // make sure we can read the array on host
|
||||
for (int i = 0; i < marker.Size(); i++)
|
||||
{
|
||||
if (marker[i]) { num_marked++; }
|
||||
@@ -652,9 +654,9 @@ void FiniteElementSpace::BuildConformingInterpolation() const
|
||||
// create the conforming restriction matrix cR
|
||||
int *cR_J;
|
||||
{
|
||||
int *cR_I = mfem::New<int>(n_true_dofs+1);
|
||||
double *cR_A = mfem::New<double>(n_true_dofs);
|
||||
cR_J = mfem::New<int>(n_true_dofs);
|
||||
int *cR_I = new int[n_true_dofs+1];
|
||||
double *cR_A = new double[n_true_dofs];
|
||||
cR_J = new int[n_true_dofs];
|
||||
for (int i = 0; i < n_true_dofs; i++)
|
||||
{
|
||||
cR_I[i] = i;
|
||||
@@ -732,6 +734,8 @@ void FiniteElementSpace::BuildConformingInterpolation() const
|
||||
MakeVDimMatrix(*cP);
|
||||
MakeVDimMatrix(*cR);
|
||||
}
|
||||
|
||||
if (Device::IsEnabled()) { cP->BuildTranspose(); }
|
||||
}
|
||||
|
||||
void FiniteElementSpace::MakeVDimMatrix(SparseMatrix &mat) const
|
||||
@@ -782,6 +786,57 @@ int FiniteElementSpace::GetNConformingDofs() const
|
||||
return P ? (P->Width() / vdim) : ndofs;
|
||||
}
|
||||
|
||||
const Operator *FiniteElementSpace::GetElementRestriction(
|
||||
ElementDofOrdering e_ordering) const
|
||||
{
|
||||
// Check if we have a discontinuous space using the FE collection:
|
||||
const L2_FECollection *dg_space = dynamic_cast<const L2_FECollection*>(fec);
|
||||
if (dg_space) { return NULL; }
|
||||
// TODO: support other DG collections.
|
||||
if (e_ordering == ElementDofOrdering::LEXICOGRAPHIC)
|
||||
{
|
||||
if (L2E_lex.Ptr() == NULL)
|
||||
{
|
||||
L2E_lex.Reset(new ElementRestriction(*this, e_ordering));
|
||||
}
|
||||
return L2E_lex.Ptr();
|
||||
}
|
||||
// e_ordering == ElementDofOrdering::NATIVE
|
||||
if (L2E_nat.Ptr() == NULL)
|
||||
{
|
||||
L2E_nat.Reset(new ElementRestriction(*this, e_ordering));
|
||||
}
|
||||
return L2E_nat.Ptr();
|
||||
}
|
||||
|
||||
const QuadratureInterpolator *FiniteElementSpace::GetQuadratureInterpolator(
|
||||
const IntegrationRule &ir) const
|
||||
{
|
||||
for (int i = 0; i < E2Q_array.Size(); i++)
|
||||
{
|
||||
const QuadratureInterpolator *qi = E2Q_array[i];
|
||||
if (qi->IntRule == &ir) { return qi; }
|
||||
}
|
||||
|
||||
QuadratureInterpolator *qi = new QuadratureInterpolator(*this, ir);
|
||||
E2Q_array.Append(qi);
|
||||
return qi;
|
||||
}
|
||||
|
||||
const QuadratureInterpolator *FiniteElementSpace::GetQuadratureInterpolator(
|
||||
const QuadratureSpace &qs) const
|
||||
{
|
||||
for (int i = 0; i < E2Q_array.Size(); i++)
|
||||
{
|
||||
const QuadratureInterpolator *qi = E2Q_array[i];
|
||||
if (qi->qspace == &qs) { return qi; }
|
||||
}
|
||||
|
||||
QuadratureInterpolator *qi = new QuadratureInterpolator(*this, qs);
|
||||
E2Q_array.Append(qi);
|
||||
return qi;
|
||||
}
|
||||
|
||||
SparseMatrix *FiniteElementSpace::RefinementMatrix_main(
|
||||
const int coarse_ndofs, const Table &coarse_elem_dof,
|
||||
const DenseTensor localP[]) const
|
||||
@@ -1485,6 +1540,10 @@ void FiniteElementSpace::GetElementDofs (int i, Array<int> &dofs) const
|
||||
|
||||
const FiniteElement *FiniteElementSpace::GetFE(int i) const
|
||||
{
|
||||
if (i < 0 || !mesh->GetNE()) { return NULL; }
|
||||
MFEM_VERIFY(i < mesh->GetNE(),
|
||||
"Invalid element id " << i << ", maximum allowed " << mesh->GetNE()-1);
|
||||
|
||||
const FiniteElement *FE =
|
||||
fec->FiniteElementForGeometry(mesh->GetElementBaseGeometry(i));
|
||||
|
||||
@@ -1789,6 +1848,13 @@ void FiniteElementSpace::Destroy()
|
||||
delete cR;
|
||||
delete cP;
|
||||
Th.Clear();
|
||||
L2E_nat.Clear();
|
||||
L2E_lex.Clear();
|
||||
for (int i = 0; i < E2Q_array.Size(); i++)
|
||||
{
|
||||
delete E2Q_array[i];
|
||||
}
|
||||
E2Q_array.SetSize(0);
|
||||
|
||||
dof_elem_array.DeleteAll();
|
||||
dof_ldof_array.DeleteAll();
|
||||
@@ -2350,8 +2416,7 @@ const Operator &InterpolationGridTransfer::BackwardOperator()
|
||||
return *B.Ptr();
|
||||
}
|
||||
|
||||
// Construct B
|
||||
// If not set, define a suitable mass_integ
|
||||
// Construct B, if not set, define a suitable mass_integ
|
||||
if (!mass_integ && ran_fes.GetNE() > 0)
|
||||
{
|
||||
const FiniteElement *f_fe_0 = ran_fes.GetFE(0);
|
||||
@@ -2514,7 +2579,7 @@ void L2ProjectionGridTransfer::L2Projection::Mult(
|
||||
fes_ho.GetElementVDofs(iho, vdofs);
|
||||
x.GetSubVector(vdofs, xel_mat.GetData());
|
||||
mfem::Mult(R(iho), xel_mat, yel_mat);
|
||||
// Place result correctly into low-order vector
|
||||
// Place result correctly into the low-order vector
|
||||
for (int iref=0; iref<nref; ++iref)
|
||||
{
|
||||
int ilor = ho2lor.GetRow(iho)[iref];
|
||||
@@ -2572,4 +2637,490 @@ const Operator &L2ProjectionGridTransfer::BackwardOperator()
|
||||
return *B;
|
||||
}
|
||||
|
||||
|
||||
ElementRestriction::ElementRestriction(const FiniteElementSpace &f,
|
||||
ElementDofOrdering e_ordering)
|
||||
: fes(f),
|
||||
ne(fes.GetNE()),
|
||||
vdim(fes.GetVDim()),
|
||||
byvdim(fes.GetOrdering() == Ordering::byVDIM),
|
||||
ndofs(fes.GetNDofs()),
|
||||
dof(ne > 0 ? fes.GetFE(0)->GetDof() : 0),
|
||||
nedofs(ne*dof),
|
||||
offsets(ndofs+1),
|
||||
indices(ne*dof)
|
||||
{
|
||||
// Assuming all finite elements are the same.
|
||||
height = vdim*ne*dof;
|
||||
width = fes.GetVSize();
|
||||
const bool dof_reorder = (e_ordering == ElementDofOrdering::LEXICOGRAPHIC);
|
||||
const int *dof_map = NULL;
|
||||
if (dof_reorder && ne > 0)
|
||||
{
|
||||
for (int e = 0; e < ne; ++e)
|
||||
{
|
||||
const FiniteElement *fe = fes.GetFE(e);
|
||||
const TensorBasisElement* el =
|
||||
dynamic_cast<const TensorBasisElement*>(fe);
|
||||
if (el) { continue; }
|
||||
mfem_error("Finite element not suitable for lexicographic ordering");
|
||||
}
|
||||
const FiniteElement *fe = fes.GetFE(0);
|
||||
const TensorBasisElement* el =
|
||||
dynamic_cast<const TensorBasisElement*>(fe);
|
||||
const Array<int> &fe_dof_map = el->GetDofMap();
|
||||
MFEM_VERIFY(fe_dof_map.Size() > 0, "invalid dof map");
|
||||
dof_map = fe_dof_map.GetData();
|
||||
}
|
||||
const Table& e2dTable = fes.GetElementToDofTable();
|
||||
const int* elementMap = e2dTable.GetJ();
|
||||
// We will be keeping a count of how many local nodes point to its global dof
|
||||
for (int i = 0; i <= ndofs; ++i)
|
||||
{
|
||||
offsets[i] = 0;
|
||||
}
|
||||
for (int e = 0; e < ne; ++e)
|
||||
{
|
||||
for (int d = 0; d < dof; ++d)
|
||||
{
|
||||
const int gid = elementMap[dof*e + d];
|
||||
++offsets[gid + 1];
|
||||
}
|
||||
}
|
||||
// Aggregate to find offsets for each global dof
|
||||
for (int i = 1; i <= ndofs; ++i)
|
||||
{
|
||||
offsets[i] += offsets[i - 1];
|
||||
}
|
||||
// For each global dof, fill in all local nodes that point to it
|
||||
for (int e = 0; e < ne; ++e)
|
||||
{
|
||||
for (int d = 0; d < dof; ++d)
|
||||
{
|
||||
const int did = (!dof_reorder)?d:dof_map[d];
|
||||
const int gid = elementMap[dof*e + did];
|
||||
const int lid = dof*e + d;
|
||||
indices[offsets[gid]++] = lid;
|
||||
}
|
||||
}
|
||||
// We shifted the offsets vector by 1 by using it as a counter.
|
||||
// Now we shift it back.
|
||||
for (int i = ndofs; i > 0; --i)
|
||||
{
|
||||
offsets[i] = offsets[i - 1];
|
||||
}
|
||||
offsets[0] = 0;
|
||||
}
|
||||
|
||||
void ElementRestriction::Mult(const Vector& x, Vector& y) const
|
||||
{
|
||||
// Assumes all elements have the same number of dofs
|
||||
const int nd = dof;
|
||||
const int vd = vdim;
|
||||
const bool t = byvdim;
|
||||
auto d_offsets = offsets.Read();
|
||||
auto d_indices = indices.Read();
|
||||
auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
|
||||
auto d_y = Reshape(y.Write(), nd, vd, ne);
|
||||
MFEM_FORALL(i, ndofs,
|
||||
{
|
||||
const int offset = d_offsets[i];
|
||||
const int nextOffset = d_offsets[i+1];
|
||||
for (int c = 0; c < vd; ++c)
|
||||
{
|
||||
const double dofValue = d_x(t?c:i,t?i:c);
|
||||
for (int j = offset; j < nextOffset; ++j)
|
||||
{
|
||||
const int idx_j = d_indices[j];
|
||||
d_y(idx_j % nd, c, idx_j / nd) = dofValue;
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void ElementRestriction::MultTranspose(const Vector& x, Vector& y) const
|
||||
{
|
||||
// Assumes all elements have the same number of dofs
|
||||
const int nd = dof;
|
||||
const int vd = vdim;
|
||||
const bool t = byvdim;
|
||||
auto d_offsets = offsets.Read();
|
||||
auto d_indices = indices.Read();
|
||||
auto d_x = Reshape(x.Read(), nd, vd, ne);
|
||||
auto d_y = Reshape(y.Write(), t?vd:ndofs, t?ndofs:vd);
|
||||
MFEM_FORALL(i, ndofs,
|
||||
{
|
||||
const int offset = d_offsets[i];
|
||||
const int nextOffset = d_offsets[i + 1];
|
||||
for (int c = 0; c < vd; ++c)
|
||||
{
|
||||
double dofValue = 0;
|
||||
for (int j = offset; j < nextOffset; ++j)
|
||||
{
|
||||
const int idx_j = d_indices[j];
|
||||
dofValue += d_x(idx_j % nd, c, idx_j / nd);
|
||||
}
|
||||
d_y(t?c:i,t?i:c) = dofValue;
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
|
||||
QuadratureInterpolator::QuadratureInterpolator(const FiniteElementSpace &fes,
|
||||
const IntegrationRule &ir)
|
||||
{
|
||||
fespace = &fes;
|
||||
qspace = NULL;
|
||||
IntRule = &ir;
|
||||
use_tensor_products = true; // not implemented yet (not used)
|
||||
|
||||
if (fespace->GetNE() == 0) { return; }
|
||||
const FiniteElement *fe = fespace->GetFE(0);
|
||||
MFEM_VERIFY(dynamic_cast<const ScalarFiniteElement*>(fe) != NULL,
|
||||
"Only scalar finite elements are supported");
|
||||
}
|
||||
|
||||
QuadratureInterpolator::QuadratureInterpolator(const FiniteElementSpace &fes,
|
||||
const QuadratureSpace &qs)
|
||||
{
|
||||
fespace = &fes;
|
||||
qspace = &qs;
|
||||
IntRule = NULL;
|
||||
use_tensor_products = true; // not implemented yet (not used)
|
||||
|
||||
if (fespace->GetNE() == 0) { return; }
|
||||
const FiniteElement *fe = fespace->GetFE(0);
|
||||
MFEM_VERIFY(dynamic_cast<const ScalarFiniteElement*>(fe) != NULL,
|
||||
"Only scalar finite elements are supported");
|
||||
}
|
||||
|
||||
template<const int T_VDIM, const int T_ND, const int T_NQ>
|
||||
void QuadratureInterpolator::Eval2D(
|
||||
const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_val,
|
||||
Vector &q_der,
|
||||
Vector &q_det,
|
||||
const int eval_flags)
|
||||
{
|
||||
const int nd = maps.ndof;
|
||||
const int nq = maps.nqpt;
|
||||
const int ND = T_ND ? T_ND : nd;
|
||||
const int NQ = T_NQ ? T_NQ : nq;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
MFEM_VERIFY(ND <= MAX_ND2D, "");
|
||||
MFEM_VERIFY(NQ <= MAX_NQ2D, "");
|
||||
MFEM_VERIFY(VDIM == 2 || !(eval_flags & DETERMINANTS), "");
|
||||
auto B = Reshape(maps.B.Read(), NQ, ND);
|
||||
auto G = Reshape(maps.G.Read(), NQ, 2, ND);
|
||||
auto E = Reshape(e_vec.Read(), ND, VDIM, NE);
|
||||
auto val = Reshape(q_val.Write(), NQ, VDIM, NE);
|
||||
auto der = Reshape(q_der.Write(), NQ, VDIM, 2, NE);
|
||||
auto det = Reshape(q_det.Write(), NQ, NE);
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int ND = T_ND ? T_ND : nd;
|
||||
const int NQ = T_NQ ? T_NQ : nq;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
constexpr int max_ND = T_ND ? T_ND : MAX_ND2D;
|
||||
constexpr int max_VDIM = T_VDIM ? T_VDIM : MAX_VDIM2D;
|
||||
double s_E[max_VDIM*max_ND];
|
||||
for (int d = 0; d < ND; d++)
|
||||
{
|
||||
for (int c = 0; c < VDIM; c++)
|
||||
{
|
||||
s_E[c+d*VDIM] = E(d,c,e);
|
||||
}
|
||||
}
|
||||
for (int q = 0; q < NQ; ++q)
|
||||
{
|
||||
if (eval_flags & VALUES)
|
||||
{
|
||||
double ed[max_VDIM];
|
||||
for (int c = 0; c < VDIM; c++) { ed[c] = 0.0; }
|
||||
for (int d = 0; d < ND; ++d)
|
||||
{
|
||||
const double b = B(q,d);
|
||||
for (int c = 0; c < VDIM; c++) { ed[c] += b*s_E[c+d*VDIM]; }
|
||||
}
|
||||
for (int c = 0; c < VDIM; c++) { val(q,c,e) = ed[c]; }
|
||||
}
|
||||
if ((eval_flags & DERIVATIVES) || (eval_flags & DETERMINANTS))
|
||||
{
|
||||
// use MAX_VDIM2D to avoid "subscript out of range" warnings
|
||||
double D[MAX_VDIM2D*2];
|
||||
for (int i = 0; i < 2*VDIM; i++) { D[i] = 0.0; }
|
||||
for (int d = 0; d < ND; ++d)
|
||||
{
|
||||
const double wx = G(q,0,d);
|
||||
const double wy = G(q,1,d);
|
||||
for (int c = 0; c < VDIM; c++)
|
||||
{
|
||||
double s_e = s_E[c+d*VDIM];
|
||||
D[c+VDIM*0] += s_e * wx;
|
||||
D[c+VDIM*1] += s_e * wy;
|
||||
}
|
||||
}
|
||||
if (eval_flags & DERIVATIVES)
|
||||
{
|
||||
for (int c = 0; c < VDIM; c++)
|
||||
{
|
||||
der(q,c,0,e) = D[c+VDIM*0];
|
||||
der(q,c,1,e) = D[c+VDIM*1];
|
||||
}
|
||||
}
|
||||
if (VDIM == 2 && (eval_flags & DETERMINANTS))
|
||||
{
|
||||
// The check (VDIM == 2) should eliminate this block when VDIM is
|
||||
// known at compile time and (VDIM != 2).
|
||||
det(q,e) = D[0]*D[3] - D[1]*D[2];
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
template<const int T_VDIM, const int T_ND, const int T_NQ>
|
||||
void QuadratureInterpolator::Eval3D(
|
||||
const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_val,
|
||||
Vector &q_der,
|
||||
Vector &q_det,
|
||||
const int eval_flags)
|
||||
{
|
||||
const int nd = maps.ndof;
|
||||
const int nq = maps.nqpt;
|
||||
const int ND = T_ND ? T_ND : nd;
|
||||
const int NQ = T_NQ ? T_NQ : nq;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
MFEM_VERIFY(ND <= MAX_ND3D, "");
|
||||
MFEM_VERIFY(NQ <= MAX_NQ3D, "");
|
||||
MFEM_VERIFY(VDIM == 3 || !(eval_flags & DETERMINANTS), "");
|
||||
auto B = Reshape(maps.B.Read(), NQ, ND);
|
||||
auto G = Reshape(maps.G.Read(), NQ, 3, ND);
|
||||
auto E = Reshape(e_vec.Read(), ND, VDIM, NE);
|
||||
auto val = Reshape(q_val.Write(), NQ, VDIM, NE);
|
||||
auto der = Reshape(q_der.Write(), NQ, VDIM, 3, NE);
|
||||
auto det = Reshape(q_det.Write(), NQ, NE);
|
||||
MFEM_FORALL(e, NE,
|
||||
{
|
||||
const int ND = T_ND ? T_ND : nd;
|
||||
const int NQ = T_NQ ? T_NQ : nq;
|
||||
const int VDIM = T_VDIM ? T_VDIM : vdim;
|
||||
constexpr int max_ND = T_ND ? T_ND : MAX_ND3D;
|
||||
constexpr int max_VDIM = T_VDIM ? T_VDIM : MAX_VDIM3D;
|
||||
double s_E[max_VDIM*max_ND];
|
||||
for (int d = 0; d < ND; d++)
|
||||
{
|
||||
for (int c = 0; c < VDIM; c++)
|
||||
{
|
||||
s_E[c+d*VDIM] = E(d,c,e);
|
||||
}
|
||||
}
|
||||
for (int q = 0; q < NQ; ++q)
|
||||
{
|
||||
if (eval_flags & VALUES)
|
||||
{
|
||||
double ed[max_VDIM];
|
||||
for (int c = 0; c < VDIM; c++) { ed[c] = 0.0; }
|
||||
for (int d = 0; d < ND; ++d)
|
||||
{
|
||||
const double b = B(q,d);
|
||||
for (int c = 0; c < VDIM; c++) { ed[c] += b*s_E[c+d*VDIM]; }
|
||||
}
|
||||
for (int c = 0; c < VDIM; c++) { val(q,c,e) = ed[c]; }
|
||||
}
|
||||
if ((eval_flags & DERIVATIVES) || (eval_flags & DETERMINANTS))
|
||||
{
|
||||
// use MAX_VDIM3D to avoid "subscript out of range" warnings
|
||||
double D[MAX_VDIM3D*3];
|
||||
for (int i = 0; i < 3*VDIM; i++) { D[i] = 0.0; }
|
||||
for (int d = 0; d < ND; ++d)
|
||||
{
|
||||
const double wx = G(q,0,d);
|
||||
const double wy = G(q,1,d);
|
||||
const double wz = G(q,2,d);
|
||||
for (int c = 0; c < VDIM; c++)
|
||||
{
|
||||
double s_e = s_E[c+d*VDIM];
|
||||
D[c+VDIM*0] += s_e * wx;
|
||||
D[c+VDIM*1] += s_e * wy;
|
||||
D[c+VDIM*2] += s_e * wz;
|
||||
}
|
||||
}
|
||||
if (eval_flags & DERIVATIVES)
|
||||
{
|
||||
for (int c = 0; c < VDIM; c++)
|
||||
{
|
||||
der(q,c,0,e) = D[c+VDIM*0];
|
||||
der(q,c,1,e) = D[c+VDIM*1];
|
||||
der(q,c,2,e) = D[c+VDIM*2];
|
||||
}
|
||||
}
|
||||
if (VDIM == 3 && (eval_flags & DETERMINANTS))
|
||||
{
|
||||
// The check (VDIM == 3) should eliminate this block when VDIM is
|
||||
// known at compile time and (VDIM != 3).
|
||||
det(q,e) = D[0] * (D[4] * D[8] - D[5] * D[7]) +
|
||||
D[3] * (D[2] * D[7] - D[1] * D[8]) +
|
||||
D[6] * (D[1] * D[5] - D[2] * D[4]);
|
||||
}
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
void QuadratureInterpolator::Mult(
|
||||
const Vector &e_vec, unsigned eval_flags,
|
||||
Vector &q_val, Vector &q_der, Vector &q_det) const
|
||||
{
|
||||
const int ne = fespace->GetNE();
|
||||
if (ne == 0) { return; }
|
||||
const int vdim = fespace->GetVDim();
|
||||
const int dim = fespace->GetMesh()->Dimension();
|
||||
const FiniteElement *fe = fespace->GetFE(0);
|
||||
const IntegrationRule *ir =
|
||||
IntRule ? IntRule : &qspace->GetElementIntRule(0);
|
||||
const DofToQuad &maps = fe->GetDofToQuad(*ir, DofToQuad::FULL);
|
||||
const int nd = maps.ndof;
|
||||
const int nq = maps.nqpt;
|
||||
void (*eval_func)(
|
||||
const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_val,
|
||||
Vector &q_der,
|
||||
Vector &q_det,
|
||||
const int eval_flags) = NULL;
|
||||
if (vdim == 1)
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (100*nd + nq)
|
||||
{
|
||||
// Q0
|
||||
case 101: eval_func = &Eval2D<1,1,1>; break;
|
||||
case 104: eval_func = &Eval2D<1,1,4>; break;
|
||||
// Q1
|
||||
case 404: eval_func = &Eval2D<1,4,4>; break;
|
||||
case 409: eval_func = &Eval2D<1,4,9>; break;
|
||||
// Q2
|
||||
case 909: eval_func = &Eval2D<1,9,9>; break;
|
||||
case 916: eval_func = &Eval2D<1,9,16>; break;
|
||||
// Q3
|
||||
case 1616: eval_func = &Eval2D<1,16,16>; break;
|
||||
case 1625: eval_func = &Eval2D<1,16,25>; break;
|
||||
case 1636: eval_func = &Eval2D<1,16,36>; break;
|
||||
// Q4
|
||||
case 2525: eval_func = &Eval2D<1,25,25>; break;
|
||||
case 2536: eval_func = &Eval2D<1,25,36>; break;
|
||||
case 2549: eval_func = &Eval2D<1,25,49>; break;
|
||||
case 2564: eval_func = &Eval2D<1,25,64>; break;
|
||||
}
|
||||
if (nq >= 100 || !eval_func)
|
||||
{
|
||||
eval_func = &Eval2D<1>;
|
||||
}
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch (1000*nd + nq)
|
||||
{
|
||||
// Q0
|
||||
case 1001: eval_func = &Eval3D<1,1,1>; break;
|
||||
case 1008: eval_func = &Eval3D<1,1,8>; break;
|
||||
// Q1
|
||||
case 8008: eval_func = &Eval3D<1,8,8>; break;
|
||||
case 8027: eval_func = &Eval3D<1,8,27>; break;
|
||||
// Q2
|
||||
case 27027: eval_func = &Eval3D<1,27,27>; break;
|
||||
case 27064: eval_func = &Eval3D<1,27,64>; break;
|
||||
// Q3
|
||||
case 64064: eval_func = &Eval3D<1,64,64>; break;
|
||||
case 64125: eval_func = &Eval3D<1,64,125>; break;
|
||||
case 64216: eval_func = &Eval3D<1,64,216>; break;
|
||||
// Q4
|
||||
case 125125: eval_func = &Eval3D<1,125,125>; break;
|
||||
case 125216: eval_func = &Eval3D<1,125,216>; break;
|
||||
}
|
||||
if (nq >= 1000 || !eval_func)
|
||||
{
|
||||
eval_func = &Eval3D<1>;
|
||||
}
|
||||
}
|
||||
}
|
||||
else if (vdim == dim)
|
||||
{
|
||||
if (dim == 2)
|
||||
{
|
||||
switch (100*nd + nq)
|
||||
{
|
||||
// Q1
|
||||
case 404: eval_func = &Eval2D<2,4,4>; break;
|
||||
case 409: eval_func = &Eval2D<2,4,9>; break;
|
||||
// Q2
|
||||
case 909: eval_func = &Eval2D<2,9,9>; break;
|
||||
case 916: eval_func = &Eval2D<2,9,16>; break;
|
||||
// Q3
|
||||
case 1616: eval_func = &Eval2D<2,16,16>; break;
|
||||
case 1625: eval_func = &Eval2D<2,16,25>; break;
|
||||
case 1636: eval_func = &Eval2D<2,16,36>; break;
|
||||
// Q4
|
||||
case 2525: eval_func = &Eval2D<2,25,25>; break;
|
||||
case 2536: eval_func = &Eval2D<2,25,36>; break;
|
||||
case 2549: eval_func = &Eval2D<2,25,49>; break;
|
||||
case 2564: eval_func = &Eval2D<2,25,64>; break;
|
||||
}
|
||||
if (nq >= 100 || !eval_func)
|
||||
{
|
||||
eval_func = &Eval2D<2>;
|
||||
}
|
||||
}
|
||||
else if (dim == 3)
|
||||
{
|
||||
switch (1000*nd + nq)
|
||||
{
|
||||
// Q1
|
||||
case 8008: eval_func = &Eval3D<3,8,8>; break;
|
||||
case 8027: eval_func = &Eval3D<3,8,27>; break;
|
||||
// Q2
|
||||
case 27027: eval_func = &Eval3D<3,27,27>; break;
|
||||
case 27064: eval_func = &Eval3D<3,27,64>; break;
|
||||
// Q3
|
||||
case 64064: eval_func = &Eval3D<3,64,64>; break;
|
||||
case 64125: eval_func = &Eval3D<3,64,125>; break;
|
||||
case 64216: eval_func = &Eval3D<3,64,216>; break;
|
||||
// Q4
|
||||
case 125125: eval_func = &Eval3D<3,125,125>; break;
|
||||
case 125216: eval_func = &Eval3D<3,125,216>; break;
|
||||
}
|
||||
if (nq >= 1000 || !eval_func)
|
||||
{
|
||||
eval_func = &Eval3D<3>;
|
||||
}
|
||||
}
|
||||
}
|
||||
if (eval_func)
|
||||
{
|
||||
eval_func(ne, vdim, maps, e_vec, q_val, q_der, q_det, eval_flags);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("case not supported yet");
|
||||
}
|
||||
}
|
||||
|
||||
void QuadratureInterpolator::MultTranspose(
|
||||
unsigned eval_flags, const Vector &q_val, const Vector &q_der,
|
||||
Vector &e_vec) const
|
||||
{
|
||||
MFEM_ABORT("this method is not implemented yet");
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
+184
@@ -59,9 +59,25 @@ Ordering::Map<Ordering::byVDIM>(int ndofs, int vdim, int dof, int vd)
|
||||
}
|
||||
|
||||
|
||||
/// Constants describing the possible orderings of the DOFs in one element.
|
||||
enum class ElementDofOrdering
|
||||
{
|
||||
/// Native ordering as defined by the FiniteElement.
|
||||
/** This ordering can be used by tensor-product elements when the
|
||||
interpolation from the DOFs to quadrature points does not use the
|
||||
tensor-product structure. */
|
||||
NATIVE,
|
||||
/// Lexicographic ordering for tensor-product FiniteElements.
|
||||
/** This ordering can be used only with tensor-product elements. */
|
||||
LEXICOGRAPHIC
|
||||
};
|
||||
|
||||
|
||||
// Forward declarations
|
||||
class NURBSExtension;
|
||||
class BilinearFormIntegrator;
|
||||
class QuadratureSpace;
|
||||
class QuadratureInterpolator;
|
||||
|
||||
|
||||
/** @brief Class FiniteElementSpace - responsible for providing FEM view of the
|
||||
@@ -110,6 +126,11 @@ protected:
|
||||
/// Transformation to apply to GridFunctions after space Update().
|
||||
OperatorHandle Th;
|
||||
|
||||
/// The element restriction operators, see GetElementRestriction().
|
||||
mutable OperatorHandle L2E_nat, L2E_lex;
|
||||
|
||||
mutable Array<QuadratureInterpolator*> E2Q_array;
|
||||
|
||||
long sequence; // should match Mesh::GetSequence
|
||||
|
||||
void UpdateNURBS();
|
||||
@@ -257,14 +278,60 @@ public:
|
||||
bool Conforming() const { return mesh->Conforming(); }
|
||||
bool Nonconforming() const { return mesh->Nonconforming(); }
|
||||
|
||||
/// The returned SparseMatrix is owned by the FiniteElementSpace.
|
||||
const SparseMatrix *GetConformingProlongation() const;
|
||||
|
||||
/// The returned SparseMatrix is owned by the FiniteElementSpace.
|
||||
const SparseMatrix *GetConformingRestriction() const;
|
||||
|
||||
/// The returned Operator is owned by the FiniteElementSpace.
|
||||
virtual const Operator *GetProlongationMatrix() const
|
||||
{ return GetConformingProlongation(); }
|
||||
|
||||
/// The returned SparseMatrix is owned by the FiniteElementSpace.
|
||||
virtual const SparseMatrix *GetRestrictionMatrix() const
|
||||
{ return GetConformingRestriction(); }
|
||||
|
||||
/// Return an Operator that converts L-vectors to E-vectors.
|
||||
/** An L-vector is a vector of size GetVSize() which is the same size as a
|
||||
GridFunction. An E-vector represents the element-wise discontinuous
|
||||
version of the FE space.
|
||||
|
||||
The layout of the E-vector is: ND x VDIM x NE, where ND is the number of
|
||||
degrees of freedom, VDIM is the vector dimension of the FE space, and NE
|
||||
is the number of the mesh elements.
|
||||
|
||||
The parameter @a e_ordering describes how the local DOFs in each element
|
||||
should be ordered, see ElementDofOrdering.
|
||||
|
||||
For discontinuous spaces, where the element-restriction is the identity,
|
||||
this method will return NULL.
|
||||
|
||||
The returned Operator is owned by the FiniteElementSpace. */
|
||||
const Operator *GetElementRestriction(ElementDofOrdering e_ordering) const;
|
||||
|
||||
/** @brief Return a QuadratureInterpolator that interpolates E-vectors to
|
||||
quadrature point values and/or derivatives (Q-vectors). */
|
||||
/** An E-vector represents the element-wise discontinuous version of the FE
|
||||
space and can be obtained, for example, from a GridFunction using the
|
||||
Operator returned by GetElementRestriction().
|
||||
|
||||
All elements will use the same IntegrationRule, @a ir as the target
|
||||
quadrature points. */
|
||||
const QuadratureInterpolator *GetQuadratureInterpolator(
|
||||
const IntegrationRule &ir) const;
|
||||
|
||||
/** @brief Return a QuadratureInterpolator that interpolates E-vectors to
|
||||
quadrature point values and/or derivatives (Q-vectors). */
|
||||
/** An E-vector represents the element-wise discontinuous version of the FE
|
||||
space and can be obtained, for example, from a GridFunction using the
|
||||
Operator returned by GetElementRestriction().
|
||||
|
||||
The target quadrature points in the elements are described by the given
|
||||
QuadratureSpace, @a qs. */
|
||||
const QuadratureInterpolator *GetQuadratureInterpolator(
|
||||
const QuadratureSpace &qs) const;
|
||||
|
||||
/// Returns vector dimension.
|
||||
inline int GetVDim() const { return vdim; }
|
||||
|
||||
@@ -806,6 +873,123 @@ public:
|
||||
virtual const Operator &BackwardOperator();
|
||||
};
|
||||
|
||||
|
||||
/// Operator that converts FiniteElementSpace L-vectors to E-vectors.
|
||||
/** Objects of this type are typically created and owned by FiniteElementSpace
|
||||
objects, see FiniteElementSpace::GetElementRestriction(). */
|
||||
class ElementRestriction : public Operator
|
||||
{
|
||||
protected:
|
||||
const FiniteElementSpace &fes;
|
||||
const int ne;
|
||||
const int vdim;
|
||||
const bool byvdim;
|
||||
const int ndofs;
|
||||
const int dof;
|
||||
const int nedofs;
|
||||
Array<int> offsets;
|
||||
Array<int> indices;
|
||||
|
||||
public:
|
||||
ElementRestriction(const FiniteElementSpace&, ElementDofOrdering);
|
||||
void Mult(const Vector &x, Vector &y) const;
|
||||
void MultTranspose(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
|
||||
/** @brief A class that performs interpolation from an E-vector to quadrature
|
||||
point values and/or derivatives (Q-vectors). */
|
||||
/** An E-vector represents the element-wise discontinuous version of the FE
|
||||
space and can be obtained, for example, from a GridFunction using the
|
||||
Operator returned by FiniteElementSpace::GetElementRestriction().
|
||||
|
||||
The target quadrature points in the elements can be described either by an
|
||||
IntegrationRule (all mesh elements must be of the same type in this case) or
|
||||
by a QuadratureSpace. */
|
||||
class QuadratureInterpolator
|
||||
{
|
||||
protected:
|
||||
friend class FiniteElementSpace; // Needs access to qspace and IntRule
|
||||
|
||||
const FiniteElementSpace *fespace; ///< Not owned
|
||||
const QuadratureSpace *qspace; ///< Not owned
|
||||
const IntegrationRule *IntRule; ///< Not owned
|
||||
|
||||
mutable bool use_tensor_products;
|
||||
|
||||
static const int MAX_NQ2D = 100;
|
||||
static const int MAX_ND2D = 100;
|
||||
static const int MAX_VDIM2D = 2;
|
||||
|
||||
static const int MAX_NQ3D = 1000;
|
||||
static const int MAX_ND3D = 1000;
|
||||
static const int MAX_VDIM3D = 3;
|
||||
|
||||
public:
|
||||
enum EvalFlags
|
||||
{
|
||||
VALUES = 1 << 0, ///< Evaluate the values at quadrature points
|
||||
DERIVATIVES = 1 << 1, ///< Evaluate the derivatives at quadrature points
|
||||
/** @brief Assuming the derivative at quadrature points form a matrix,
|
||||
this flag can be used to compute and store their determinants. This
|
||||
flag can only be used in Mult(). */
|
||||
DETERMINANTS = 1 << 2
|
||||
};
|
||||
|
||||
QuadratureInterpolator(const FiniteElementSpace &fes,
|
||||
const IntegrationRule &ir);
|
||||
|
||||
QuadratureInterpolator(const FiniteElementSpace &fes,
|
||||
const QuadratureSpace &qs);
|
||||
|
||||
/** @brief Disable the use of tensor product evaluations, for tensor-product
|
||||
elements, e.g. quads and hexes. */
|
||||
/** Currently, tensor product evaluations are not implemented and this method
|
||||
has no effect. */
|
||||
void DisableTensorProducts(bool disable = true) const
|
||||
{ use_tensor_products = !disable; }
|
||||
|
||||
/// Interpolate the E-vector @a e_vec to quadrature points.
|
||||
/** The @a eval_flags are a bitwise mask of constants from the EvalFlags
|
||||
enumeration. When the VALUES flag is set, the values at quadrature points
|
||||
are computed and stored in the Vector @a q_val. Similarly, when the flag
|
||||
DERIVATIVES is set, the derivatives are computed and stored in @a q_der.
|
||||
When the DETERMINANTS flags is set, it is assumed that the derivatives
|
||||
form a matrix at each quadrature point (i.e. the associated
|
||||
FiniteElementSpace is a vector space) and their determinants are computed
|
||||
and stored in @a q_det. */
|
||||
void Mult(const Vector &e_vec, unsigned eval_flags,
|
||||
Vector &q_val, Vector &q_der, Vector &q_det) const;
|
||||
|
||||
/// Perform the transpose operation of Mult(). (TODO)
|
||||
void MultTranspose(unsigned eval_flags, const Vector &q_val,
|
||||
const Vector &q_der, Vector &e_vec) const;
|
||||
|
||||
// Compute kernels follow (cannot be private or protected with nvcc)
|
||||
|
||||
/// Template compute kernel for 2D.
|
||||
template<const int T_VDIM = 0, const int T_ND = 0, const int T_NQ = 0>
|
||||
static void Eval2D(const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_val,
|
||||
Vector &q_der,
|
||||
Vector &q_det,
|
||||
const int eval_flags);
|
||||
|
||||
/// Template compute kernel for 3D.
|
||||
template<const int T_VDIM = 0, const int T_ND = 0, const int T_NQ = 0>
|
||||
static void Eval3D(const int NE,
|
||||
const int vdim,
|
||||
const DofToQuad &maps,
|
||||
const Vector &e_vec,
|
||||
Vector &q_val,
|
||||
Vector &q_der,
|
||||
Vector &q_det,
|
||||
const int eval_flags);
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
|
||||
+19
-7
@@ -30,6 +30,9 @@ using namespace std;
|
||||
GridFunction::GridFunction(Mesh *m, std::istream &input)
|
||||
: Vector()
|
||||
{
|
||||
// Grid functions are stored on the device
|
||||
UseDevice(true);
|
||||
|
||||
fes = new FiniteElementSpace;
|
||||
fec = fes->Load(m, input);
|
||||
|
||||
@@ -60,6 +63,8 @@ GridFunction::GridFunction(Mesh *m, std::istream &input)
|
||||
|
||||
GridFunction::GridFunction(Mesh *m, GridFunction *gf_array[], int num_pieces)
|
||||
{
|
||||
UseDevice(true);
|
||||
|
||||
// all GridFunctions must have the same FE collection, vdim, ordering
|
||||
int vdim, ordering;
|
||||
|
||||
@@ -163,6 +168,7 @@ void GridFunction::Update()
|
||||
Vector old_data;
|
||||
old_data.Swap(*this);
|
||||
SetSize(T->Height());
|
||||
UseDevice(true);
|
||||
T->Mult(old_data, *this);
|
||||
}
|
||||
else
|
||||
@@ -192,7 +198,9 @@ void GridFunction::MakeRef(FiniteElementSpace *f, Vector &v, int v_offset)
|
||||
MFEM_ASSERT(v.Size() >= v_offset + f->GetVSize(), "");
|
||||
if (f != fes) { Destroy(); }
|
||||
fes = f;
|
||||
NewDataAndSize((double *)v + v_offset, fes->GetVSize());
|
||||
v.UseDevice(true);
|
||||
NewMemoryAndSize(Memory<double>(v.GetMemory(), v_offset, fes->GetVSize()),
|
||||
fes->GetVSize(), true);
|
||||
sequence = fes->GetSequence();
|
||||
}
|
||||
|
||||
@@ -215,13 +223,16 @@ void GridFunction::MakeTRef(FiniteElementSpace *f, Vector &tv, int tv_offset)
|
||||
if (!f->GetProlongationMatrix())
|
||||
{
|
||||
MakeRef(f, tv, tv_offset);
|
||||
t_vec.NewDataAndSize(data, size);
|
||||
t_vec.NewMemoryAndSize(data, size, false);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ASSERT(tv.Size() >= tv_offset + f->GetTrueVSize(), "");
|
||||
SetSpace(f); // works in parallel
|
||||
t_vec.NewDataAndSize(&tv(tv_offset), f->GetTrueVSize());
|
||||
tv.UseDevice(true);
|
||||
const int tv_size = f->GetTrueVSize();
|
||||
t_vec.NewMemoryAndSize(Memory<double>(tv.GetMemory(), tv_offset, tv_size),
|
||||
tv_size, true);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -302,7 +313,7 @@ int GridFunction::VectorDim() const
|
||||
{
|
||||
fe = fes->GetFE(0);
|
||||
}
|
||||
if (fe->GetRangeType() == FiniteElement::SCALAR)
|
||||
if (!fe || fe->GetRangeType() == FiniteElement::SCALAR)
|
||||
{
|
||||
return fes->GetVDim();
|
||||
}
|
||||
@@ -315,7 +326,7 @@ void GridFunction::GetTrueDofs(Vector &tv) const
|
||||
if (!R)
|
||||
{
|
||||
// R is identity -> make tv a reference to *this
|
||||
tv.NewDataAndSize(data, size);
|
||||
tv.NewDataAndSize(const_cast<double*>((const double*)data), size);
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -1367,7 +1378,7 @@ void GridFunction::AccumulateAndCountBdrValues(
|
||||
if (vdofs.Size() == 0) { continue; }
|
||||
|
||||
transf = mesh->GetEdgeTransformation(edge);
|
||||
transf->Attribute = -1; // FIXME: set the boundary attribute
|
||||
transf->Attribute = -1; // TODO: set the boundary attribute
|
||||
fe = fes->GetEdgeElement(edge);
|
||||
if (!vcoeff)
|
||||
{
|
||||
@@ -1471,7 +1482,7 @@ void GridFunction::AccumulateAndCountBdrTangentValues(
|
||||
if (dofs.Size() == 0) { continue; }
|
||||
|
||||
T = mesh->GetEdgeTransformation(edge);
|
||||
T->Attribute = -1; // FIXME: set the boundary attribute
|
||||
T->Attribute = -1; // TODO: set the boundary attribute
|
||||
fe = fes->GetEdgeElement(edge);
|
||||
lvec.SetSize(fe->GetDof());
|
||||
fe->Project(vcoeff, *T, lvec);
|
||||
@@ -1776,6 +1787,7 @@ void GridFunction::ProjectBdrCoefficient(VectorCoefficient &vcoeff,
|
||||
void GridFunction::ProjectBdrCoefficient(Coefficient *coeff[], Array<int> &attr)
|
||||
{
|
||||
Array<int> values_counter;
|
||||
this->HostReadWrite();
|
||||
AccumulateAndCountBdrValues(coeff, NULL, attr, values_counter);
|
||||
ComputeMeans(ARITHMETIC, values_counter);
|
||||
#ifdef MFEM_DEBUG
|
||||
|
||||
+12
-7
@@ -68,15 +68,16 @@ protected:
|
||||
|
||||
public:
|
||||
|
||||
GridFunction() { fes = NULL; fec = NULL; sequence = 0; }
|
||||
GridFunction() { fes = NULL; fec = NULL; sequence = 0; UseDevice(true); }
|
||||
|
||||
/// Copy constructor. The internal true-dof vector #t_vec is not copied.
|
||||
GridFunction(const GridFunction &orig)
|
||||
: Vector(orig), fes(orig.fes), fec(NULL), sequence(orig.sequence) { }
|
||||
: Vector(orig), fes(orig.fes), fec(NULL), sequence(orig.sequence)
|
||||
{ UseDevice(true); }
|
||||
|
||||
/// Construct a GridFunction associated with the FiniteElementSpace @a *f.
|
||||
GridFunction(FiniteElementSpace *f) : Vector(f->GetVSize())
|
||||
{ fes = f; fec = NULL; sequence = f->GetSequence(); }
|
||||
{ fes = f; fec = NULL; sequence = f->GetSequence(); UseDevice(true); }
|
||||
|
||||
/// Construct a GridFunction using previously allocated array @a data.
|
||||
/** The GridFunction does not assume ownership of @a data which is assumed to
|
||||
@@ -84,8 +85,9 @@ public:
|
||||
for externally allocated array, the pointer @a data can be NULL. The data
|
||||
array can be replaced later using the method SetData().
|
||||
*/
|
||||
GridFunction(FiniteElementSpace *f, double *data) : Vector(data, f->GetVSize())
|
||||
{ fes = f; fec = NULL; sequence = f->GetSequence(); }
|
||||
GridFunction(FiniteElementSpace *f, double *data)
|
||||
: Vector(data, f->GetVSize())
|
||||
{ fes = f; fec = NULL; sequence = f->GetSequence(); UseDevice(true); }
|
||||
|
||||
/// Construct a GridFunction on the given Mesh, using the data from @a input.
|
||||
/** The content of @a input should be in the format created by the method
|
||||
@@ -124,6 +126,7 @@ public:
|
||||
|
||||
/// @brief Extract the true-dofs from the GridFunction. If all dofs are true,
|
||||
/// then `tv` will be set to point to the data of `*this`.
|
||||
/** @warning This method breaks const-ness when all dofs are true. */
|
||||
void GetTrueDofs(Vector &tv) const;
|
||||
|
||||
/// Shortcut for calling GetTrueDofs() with GetTrueVector() as argument.
|
||||
@@ -702,7 +705,7 @@ inline void QuadratureFunction::GetElementValues(int idx, Vector &values) const
|
||||
const int s_offset = qspace->element_offsets[idx];
|
||||
const int sl_size = qspace->element_offsets[idx+1] - s_offset;
|
||||
values.SetSize(vdim*sl_size);
|
||||
double *q = data + vdim*s_offset;
|
||||
const double *q = data + vdim*s_offset;
|
||||
for (int i = 0; i<values.Size(); i++)
|
||||
{
|
||||
values(i) = *(q++);
|
||||
@@ -722,12 +725,14 @@ inline void QuadratureFunction::GetElementValues(int idx,
|
||||
const int s_offset = qspace->element_offsets[idx];
|
||||
const int sl_size = qspace->element_offsets[idx+1] - s_offset;
|
||||
values.SetSize(vdim, sl_size);
|
||||
double *q = data + vdim*s_offset;
|
||||
const double *q = data + vdim*s_offset;
|
||||
for (int j = 0; j<sl_size; j++)
|
||||
{
|
||||
for (int i = 0; i<vdim; i++)
|
||||
{
|
||||
values(i,j) = *(q++);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -78,6 +78,19 @@ IntegrationRule::IntegrationRule(IntegrationRule &irx, IntegrationRule &iry,
|
||||
}
|
||||
}
|
||||
|
||||
const Array<double> &IntegrationRule::GetWeights() const
|
||||
{
|
||||
if (weights.Size() != GetNPoints())
|
||||
{
|
||||
weights.SetSize(GetNPoints());
|
||||
for (int i = 0; i < GetNPoints(); i++)
|
||||
{
|
||||
weights[i] = IntPoint(i).weight;
|
||||
}
|
||||
}
|
||||
return weights;
|
||||
}
|
||||
|
||||
void IntegrationRule::GrundmannMollerSimplexRule(int s, int n)
|
||||
{
|
||||
// for pow on older compilers
|
||||
|
||||
@@ -87,6 +87,9 @@ class IntegrationRule : public Array<IntegrationPoint>
|
||||
private:
|
||||
friend class IntegrationRules;
|
||||
int Order;
|
||||
/** @brief The quadrature weights gathered as a contiguous array. Created
|
||||
by request with the method GetWeights(). */
|
||||
mutable Array<double> weights;
|
||||
|
||||
/// Define n-simplex rule (triangle/tetrahedron for n=2/3) of order (2s+1)
|
||||
void GrundmannMollerSimplexRule(int s, int n = 3);
|
||||
@@ -239,6 +242,11 @@ public:
|
||||
/// Returns a const reference to the i-th integration point
|
||||
const IntegrationPoint &IntPoint(int i) const { return (*this)[i]; }
|
||||
|
||||
/// Return the quadrature weights in a contiguous array.
|
||||
/** If a contiguous array is not required, the weights can be accessed with
|
||||
a call like this: `IntPoint(i).weight`. */
|
||||
const Array<double> &GetWeights() const;
|
||||
|
||||
/// Destroys an IntegrationRule object
|
||||
~IntegrationRule() { }
|
||||
};
|
||||
|
||||
@@ -19,6 +19,9 @@ namespace mfem
|
||||
LinearForm::LinearForm(FiniteElementSpace *f, LinearForm *lf)
|
||||
: Vector(f->GetVSize())
|
||||
{
|
||||
// Linear forms are stored on the device
|
||||
UseDevice(true);
|
||||
|
||||
fes = f;
|
||||
extern_lfs = 1;
|
||||
|
||||
@@ -83,6 +86,10 @@ void LinearForm::Assemble()
|
||||
|
||||
Vector::operator=(0.0);
|
||||
|
||||
// The above operation is executed on device because of UseDevice().
|
||||
// The first use of AddElementVector() below will move it back to host
|
||||
// because both 'vdofs' and 'elemvect' are on host.
|
||||
|
||||
if (dlfi.Size())
|
||||
{
|
||||
for (i = 0; i < fes -> GetNE(); i++)
|
||||
|
||||
+2
-2
@@ -64,7 +64,7 @@ public:
|
||||
/// Creates linear form associated with FE space @a *f.
|
||||
/** The pointer @a f is not owned by the newly constructed object. */
|
||||
LinearForm(FiniteElementSpace *f) : Vector(f->GetVSize())
|
||||
{ fes = f; extern_lfs = 0; }
|
||||
{ fes = f; extern_lfs = 0; UseDevice(true); }
|
||||
|
||||
/** @brief Create a LinearForm on the FiniteElementSpace @a f, using the
|
||||
same integrators as the LinearForm @a lf.
|
||||
@@ -79,7 +79,7 @@ public:
|
||||
/** The associated FiniteElementSpace can be set later using one of the
|
||||
methods: Update(FiniteElementSpace *) or
|
||||
Update(FiniteElementSpace *, Vector &, int). */
|
||||
LinearForm() { fes = NULL; extern_lfs = 0; }
|
||||
LinearForm() { fes = NULL; extern_lfs = 0; UseDevice(true); }
|
||||
|
||||
/// Copy assignment. Only the data of the base class Vector is copied.
|
||||
/** It is assumed that this object and @a rhs use FiniteElementSpace%s that
|
||||
|
||||
+3
-3
@@ -181,7 +181,7 @@ void VectorDomainLFIntegrator::AssembleRHSElementVect(
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int intorder = el.GetOrder() + 1;
|
||||
int intorder = 2*el.GetOrder();
|
||||
ir = &IntRules.Get(el.GetGeomType(), intorder);
|
||||
}
|
||||
|
||||
@@ -240,7 +240,7 @@ void VectorBoundaryLFIntegrator::AssembleRHSElementVect(
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int intorder = el.GetOrder() + 1;
|
||||
int intorder = 2*el.GetOrder();
|
||||
ir = &IntRules.Get(el.GetGeomType(), intorder);
|
||||
}
|
||||
|
||||
@@ -275,7 +275,7 @@ void VectorBoundaryLFIntegrator::AssembleRHSElementVect(
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int intorder = el.GetOrder() + 1;
|
||||
int intorder = 2*el.GetOrder();
|
||||
ir = &IntRules.Get(Tr.FaceGeom, intorder);
|
||||
}
|
||||
|
||||
|
||||
+36
-36
@@ -35,11 +35,11 @@ typedef double* QLocal2D_t @dim(Q1D, Q1D, NE);
|
||||
typedef double* DLocal3D_t @dim(D1D, D1D, D1D, NE);
|
||||
typedef double* QLocal3D_t @dim(Q1D, Q1D, Q1D, NE);
|
||||
|
||||
typedef double* Jacobian2D_t @dim(2, 2, Q2D, NE);
|
||||
typedef double* Jacobian3D_t @dim(3, 3, Q3D, NE);
|
||||
typedef double* Jacobian2D_t @dim(Q2D, 2, 2, NE);
|
||||
typedef double* Jacobian3D_t @dim(Q3D, 3, 3, NE);
|
||||
|
||||
typedef double* SymmOperator2D_t @dim(3, Q2D, NE);
|
||||
typedef double* SymmOperator3D_t @dim(6, Q3D, NE);
|
||||
typedef double* SymmOperator2D_t @dim(Q2D, 3, NE);
|
||||
typedef double* SymmOperator3D_t @dim(Q3D, 6, NE);
|
||||
|
||||
@kernel void DiffusionSetup2D(const int NE,
|
||||
@restrict const double *W,
|
||||
@@ -48,12 +48,12 @@ typedef double* SymmOperator3D_t @dim(6, Q3D, NE);
|
||||
@restrict SymmOperator2D_t op) {
|
||||
for (int e = 0; e < NE; ++e; @outer) {
|
||||
for (int q = 0; q < Q2D; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
const double J11 = J(q, 0, 0, e), J12 = J(q, 1, 0, e);
|
||||
const double J21 = J(q, 0, 1, e), J22 = J(q, 1, 1, e);
|
||||
const double c_detJ = W[q] * COEFF / ((J11 * J22) - (J21 * J12));
|
||||
op(0, q, e) = c_detJ * (J21*J21 + J22*J22); // (1,1)
|
||||
op(1, q, e) = -c_detJ * (J21*J11 + J22*J12); // (1,2), (2,1)
|
||||
op(2, q, e) = c_detJ * (J11*J11 + J12*J12); // (2,2)
|
||||
op(q, 0, e) = c_detJ * (J21*J21 + J22*J22); // (1,1)
|
||||
op(q, 1, e) = -c_detJ * (J21*J11 + J22*J12); // (1,2), (2,1)
|
||||
op(q, 2, e) = c_detJ * (J11*J11 + J12*J12); // (2,2)
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -65,9 +65,9 @@ typedef double* SymmOperator3D_t @dim(6, Q3D, NE);
|
||||
@restrict SymmOperator3D_t op) {
|
||||
for (int e = 0; e < NE; ++e; @outer) {
|
||||
for (int q = 0; q < Q3D; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
const double J11 = J(q, 0, 0, e), J12 = J(q, 1, 0, e), J13 = J(q, 2, 0, e);
|
||||
const double J21 = J(q, 0, 1, e), J22 = J(q, 1, 1, e), J23 = J(q, 2, 1, e);
|
||||
const double J31 = J(q, 0, 2, e), J32 = J(q, 1, 2, e), J33 = J(q, 2, 2, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
@@ -88,12 +88,12 @@ typedef double* SymmOperator3D_t @dim(6, Q3D, NE);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
// adj(J)^Tadj(J)
|
||||
op(0, q, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
op(1, q, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2), (2,1)
|
||||
op(2, q, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3), (3,1)
|
||||
op(3, q, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
op(4, q, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3), (3,2)
|
||||
op(5, q, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
op(q, 0, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
op(q, 1, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2), (2,1)
|
||||
op(q, 2, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3), (3,1)
|
||||
op(q, 3, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
op(q, 4, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3), (3,2)
|
||||
op(q, 5, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -146,9 +146,9 @@ typedef double* SymmOperator3D_t @dim(6, Q3D, NE);
|
||||
for (int qy = 0; qy < Q1D; ++qy) {
|
||||
for (int qx = 0; qx < Q1D; ++qx) {
|
||||
const int q = QUAD_2D_ID(qx, qy);
|
||||
const double O11 = op(0, q, e);
|
||||
const double O12 = op(1, q, e);
|
||||
const double O22 = op(2, q, e);
|
||||
const double O11 = op(q, 0, e);
|
||||
const double O12 = op(q, 1, e);
|
||||
const double O22 = op(q, 2, e);
|
||||
|
||||
const double gradX = grad[qy][qx][0];
|
||||
const double gradY = grad[qy][qx][1];
|
||||
@@ -255,9 +255,9 @@ typedef double* SymmOperator3D_t @dim(6, Q3D, NE);
|
||||
}
|
||||
|
||||
const int q = QUAD_2D_ID(qx, qy);
|
||||
const double O11 = op(0, q, e);
|
||||
const double O12 = op(1, q, e);
|
||||
const double O22 = op(2, q, e);
|
||||
const double O11 = op(q, 0, e);
|
||||
const double O12 = op(q, 1, e);
|
||||
const double O22 = op(q, 2, e);
|
||||
|
||||
s_grad(0, qx, qy) = (O11 * gradX) + (O12 * gradY);
|
||||
s_grad(1, qx, qy) = (O12 * gradX) + (O22 * gradY);
|
||||
@@ -382,12 +382,12 @@ typedef double* SymmOperator3D_t @dim(6, Q3D, NE);
|
||||
for (int qy = 0; qy < Q1D; ++qy) {
|
||||
for (int qx = 0; qx < Q1D; ++qx) {
|
||||
const int q = QUAD_3D_ID(qx, qy, qz);
|
||||
const double O11 = op(0, q, e);
|
||||
const double O12 = op(1, q, e);
|
||||
const double O13 = op(2, q, e);
|
||||
const double O22 = op(3, q, e);
|
||||
const double O23 = op(4, q, e);
|
||||
const double O33 = op(5, q, e);
|
||||
const double O11 = op(q, 0, e);
|
||||
const double O12 = op(q, 1, e);
|
||||
const double O13 = op(q, 2, e);
|
||||
const double O22 = op(q, 3, e);
|
||||
const double O23 = op(q, 4, e);
|
||||
const double O33 = op(q, 5, e);
|
||||
|
||||
const double gradX = grad[qz][qy][qx][0];
|
||||
const double gradY = grad[qz][qy][qx][1];
|
||||
@@ -557,12 +557,12 @@ typedef double* SymmOperator3D_t @dim(6, Q3D, NE);
|
||||
}
|
||||
|
||||
const int q = QUAD_3D_ID(qx, qy, qz);
|
||||
const double O11 = op(0, q, e);
|
||||
const double O12 = op(1, q, e);
|
||||
const double O13 = op(2, q, e);
|
||||
const double O22 = op(3, q, e);
|
||||
const double O23 = op(4, q, e);
|
||||
const double O33 = op(5, q, e);
|
||||
const double O11 = op(q, 0, e);
|
||||
const double O12 = op(q, 1, e);
|
||||
const double O13 = op(q, 2, e);
|
||||
const double O22 = op(q, 3, e);
|
||||
const double O23 = op(q, 4, e);
|
||||
const double O33 = op(q, 5, e);
|
||||
|
||||
const double qDxyz = (O11 * Dxyz) + (O12 * xDyz) + (O13 * xyDz);
|
||||
const double qxDyz = (O12 * Dxyz) + (O22 * xDyz) + (O23 * xyDz);
|
||||
|
||||
@@ -203,7 +203,14 @@ void ParBilinearForm::AssembleSharedFaces(int skip_zeros)
|
||||
vdofs1.Copy(vdofs_all);
|
||||
for (int j = 0; j < vdofs2.Size(); j++)
|
||||
{
|
||||
vdofs2[j] += height;
|
||||
if (vdofs2[j] >= 0)
|
||||
{
|
||||
vdofs2[j] += height;
|
||||
}
|
||||
else
|
||||
{
|
||||
vdofs2[j] -= height;
|
||||
}
|
||||
}
|
||||
vdofs_all.Append(vdofs2);
|
||||
for (int k = 0; k < fbfi.Size(); k++)
|
||||
|
||||
+306
-36
@@ -14,6 +14,7 @@
|
||||
#ifdef MFEM_USE_MPI
|
||||
|
||||
#include "pfespace.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include "../general/sort_pairs.hpp"
|
||||
#include "../mesh/mesh_headers.hpp"
|
||||
#include "../general/binaryio.hpp"
|
||||
@@ -613,15 +614,15 @@ void ParFiniteElementSpace::Build_Dof_TrueDof_Matrix() const // matrix P
|
||||
int ldof = GetVSize();
|
||||
int ltdof = TrueVSize();
|
||||
|
||||
HYPRE_Int *i_diag = mfem::New<HYPRE_Int>(ldof+1);
|
||||
HYPRE_Int *j_diag = mfem::New<HYPRE_Int>(ltdof);
|
||||
HYPRE_Int *i_diag = new HYPRE_Int[ldof+1];
|
||||
HYPRE_Int *j_diag = new HYPRE_Int[ltdof];
|
||||
int diag_counter;
|
||||
|
||||
HYPRE_Int *i_offd = mfem::New<HYPRE_Int>(ldof+1);
|
||||
HYPRE_Int *j_offd = mfem::New<HYPRE_Int>(ldof-ltdof);
|
||||
HYPRE_Int *i_offd = new HYPRE_Int[ldof+1];
|
||||
HYPRE_Int *j_offd = new HYPRE_Int[ldof-ltdof];
|
||||
int offd_counter;
|
||||
|
||||
HYPRE_Int *cmap = mfem::New<HYPRE_Int>(ldof-ltdof);
|
||||
HYPRE_Int *cmap = new HYPRE_Int[ldof-ltdof];
|
||||
|
||||
HYPRE_Int *col_starts = GetTrueDofOffsets();
|
||||
HYPRE_Int *row_starts = GetDofOffsets();
|
||||
@@ -747,12 +748,14 @@ void ParFiniteElementSpace::GetEssentialTrueDofs(const Array<int>
|
||||
// Verify that in boolean arithmetic: P^T ess_dofs = R ess_dofs.
|
||||
Array<int> true_ess_dofs2(true_ess_dofs.Size());
|
||||
HypreParMatrix *Pt = Dof_TrueDof_Matrix()->Transpose();
|
||||
Pt->BooleanMult(1, ess_dofs, 0, true_ess_dofs2);
|
||||
const int *ess_dofs_data = ess_dofs.HostRead();
|
||||
Pt->BooleanMult(1, ess_dofs_data, 0, true_ess_dofs2);
|
||||
delete Pt;
|
||||
int counter = 0;
|
||||
const int *ted = true_ess_dofs.HostRead();
|
||||
for (int i = 0; i < true_ess_dofs.Size(); i++)
|
||||
{
|
||||
if (bool(true_ess_dofs[i]) != bool(true_ess_dofs2[i])) { counter++; }
|
||||
if (bool(ted[i]) != bool(true_ess_dofs2[i])) { counter++; }
|
||||
}
|
||||
MFEM_VERIFY(counter == 0, "internal MFEM error: counter = " << counter);
|
||||
#endif
|
||||
@@ -854,7 +857,20 @@ const Operator *ParFiniteElementSpace::GetProlongationMatrix() const
|
||||
{
|
||||
if (Conforming())
|
||||
{
|
||||
if (!Pconf) { Pconf = new ConformingProlongationOperator(*this); }
|
||||
if (!Pconf)
|
||||
{
|
||||
if (!Device::Allows(Backend::DEVICE_MASK))
|
||||
{
|
||||
Pconf = new ConformingProlongationOperator(*this);
|
||||
}
|
||||
else
|
||||
{
|
||||
if (NRanks > 1)
|
||||
{
|
||||
Pconf = new DeviceConformingProlongationOperator(*this);
|
||||
}
|
||||
}
|
||||
}
|
||||
return Pconf;
|
||||
}
|
||||
else
|
||||
@@ -902,11 +918,15 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
|
||||
{
|
||||
GetElementVDofs(my_elems[i], ldofs);
|
||||
for (int j = 0; j < ldofs.Size(); j++)
|
||||
if (ldof_marker[ldofs[j]] != fn)
|
||||
{
|
||||
int ldof = (ldofs[j] >= 0 ? ldofs[j] : -1-ldofs[j]);
|
||||
|
||||
if (ldof_marker[ldof] != fn)
|
||||
{
|
||||
ldof_marker[ldofs[j]] = fn;
|
||||
ldof_marker[ldof] = fn;
|
||||
send_face_nbr_ldof.AddAColumnInRow(fn);
|
||||
}
|
||||
}
|
||||
send_nbr_elem_dof.AddColumnsInRow(send_el_off[fn] + i, ldofs.Size());
|
||||
}
|
||||
|
||||
@@ -960,9 +980,11 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
|
||||
GetElementVDofs(my_elems[i], ldofs);
|
||||
for (int j = 0; j < ldofs.Size(); j++)
|
||||
{
|
||||
if (ldof_marker[ldofs[j]] != fn)
|
||||
int ldof = (ldofs[j] >= 0 ? ldofs[j] : -1-ldofs[j]);
|
||||
|
||||
if (ldof_marker[ldof] != fn)
|
||||
{
|
||||
ldof_marker[ldofs[j]] = fn;
|
||||
ldof_marker[ldof] = fn;
|
||||
send_face_nbr_ldof.AddConnection(fn, ldofs[j]);
|
||||
}
|
||||
}
|
||||
@@ -983,12 +1005,14 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
|
||||
|
||||
for (int i = 0; i < num_ldofs; i++)
|
||||
{
|
||||
ldof_marker[ldofs[i]] = i;
|
||||
int ldof = (ldofs[i] >= 0 ? ldofs[i] : -1-ldofs[i]);
|
||||
ldof_marker[ldof] = i;
|
||||
}
|
||||
|
||||
for ( ; j < j_end; j++)
|
||||
{
|
||||
send_J[j] = ldof_marker[send_J[j]];
|
||||
int ldof = (send_J[j] >= 0 ? send_J[j] : -1-send_J[j]);
|
||||
send_J[j] = (send_J[j] >= 0 ? ldof_marker[ldof] : -1-ldof_marker[ldof]);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1023,7 +1047,14 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
|
||||
|
||||
for ( ; j < j_end; j++)
|
||||
{
|
||||
recv_J[j] += shift;
|
||||
if (recv_J[j] >= 0)
|
||||
{
|
||||
recv_J[j] += shift;
|
||||
}
|
||||
else
|
||||
{
|
||||
recv_J[j] -= shift;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1072,8 +1103,15 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
|
||||
for (int fn = 0, j = 0; fn < num_face_nbrs; fn++)
|
||||
{
|
||||
for (int j_end = face_nbr_ldof.GetI()[fn+1]; j < j_end; j++)
|
||||
face_nbr_glob_dof_map[j] =
|
||||
dof_face_nbr_offsets[fn] + face_nbr_ldof.GetJ()[j];
|
||||
{
|
||||
int ldof = face_nbr_ldof.GetJ()[j];
|
||||
if (ldof < 0)
|
||||
{
|
||||
ldof = -1-ldof;
|
||||
}
|
||||
|
||||
face_nbr_glob_dof_map[j] = dof_face_nbr_offsets[fn] + ldof;
|
||||
}
|
||||
}
|
||||
|
||||
MPI_Waitall(num_face_nbrs, send_requests, statuses);
|
||||
@@ -2249,7 +2287,7 @@ HypreParMatrix* ParFiniteElementSpace
|
||||
}
|
||||
|
||||
// create offd column mapping
|
||||
HYPRE_Int *cmap = mfem::New<HYPRE_Int>(col_map.size());
|
||||
HYPRE_Int *cmap = new HYPRE_Int[col_map.size()];
|
||||
int offd_col = 0;
|
||||
for (std::map<HYPRE_Int, int>::iterator
|
||||
it = col_map.begin(); it != col_map.end(); ++it)
|
||||
@@ -2258,14 +2296,14 @@ HypreParMatrix* ParFiniteElementSpace
|
||||
it->second = offd_col++;
|
||||
}
|
||||
|
||||
HYPRE_Int *I_diag = mfem::New<HYPRE_Int>(vdim*local_rows + 1);
|
||||
HYPRE_Int *I_offd = mfem::New<HYPRE_Int>(vdim*local_rows + 1);
|
||||
HYPRE_Int *I_diag = new HYPRE_Int[vdim*local_rows + 1];
|
||||
HYPRE_Int *I_offd = new HYPRE_Int[vdim*local_rows + 1];
|
||||
|
||||
HYPRE_Int *J_diag = mfem::New<HYPRE_Int>(nnz_diag);
|
||||
HYPRE_Int *J_offd = mfem::New<HYPRE_Int>(nnz_offd);
|
||||
HYPRE_Int *J_diag = new HYPRE_Int[nnz_diag];
|
||||
HYPRE_Int *J_offd = new HYPRE_Int[nnz_offd];
|
||||
|
||||
double *A_diag = mfem::New<double>(nnz_diag);
|
||||
double *A_offd = mfem::New<double>(nnz_offd);
|
||||
double *A_diag = new double[nnz_diag];
|
||||
double *A_offd = new double[nnz_offd];
|
||||
|
||||
int vdim1 = bynodes ? vdim : 1;
|
||||
int vdim2 = bynodes ? 1 : vdim;
|
||||
@@ -2316,7 +2354,7 @@ HypreParMatrix* ParFiniteElementSpace
|
||||
|
||||
static HYPRE_Int* make_i_array(int nrows)
|
||||
{
|
||||
HYPRE_Int *I = mfem::New<HYPRE_Int>(nrows+1);
|
||||
HYPRE_Int *I = new HYPRE_Int[nrows+1];
|
||||
for (int i = 0; i <= nrows; i++) { I[i] = -1; }
|
||||
return I;
|
||||
}
|
||||
@@ -2328,7 +2366,7 @@ static HYPRE_Int* make_j_array(HYPRE_Int* I, int nrows)
|
||||
{
|
||||
if (I[i] >= 0) { nnz++; }
|
||||
}
|
||||
HYPRE_Int *J = mfem::New<HYPRE_Int>(nnz);
|
||||
HYPRE_Int *J = new HYPRE_Int[nnz];
|
||||
|
||||
I[nrows] = -1;
|
||||
for (int i = 0, k = 0; i <= nrows; i++)
|
||||
@@ -2427,7 +2465,7 @@ ParFiniteElementSpace::RebalanceMatrix(int old_ndofs,
|
||||
}
|
||||
SortPairs<HYPRE_Int, int>(cmap_offd, offd_cols);
|
||||
|
||||
HYPRE_Int* cmap = mfem::New<HYPRE_Int>(offd_cols);
|
||||
HYPRE_Int* cmap = new HYPRE_Int[offd_cols];
|
||||
for (int i = 0; i < offd_cols; i++)
|
||||
{
|
||||
cmap[i] = cmap_offd[i].one;
|
||||
@@ -2623,7 +2661,7 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
|
||||
offd->SetWidth(col_map.size());
|
||||
|
||||
// create offd column mapping for use by hypre
|
||||
HYPRE_Int *cmap = mfem::New<HYPRE_Int>(offd->Width());
|
||||
HYPRE_Int *cmap = new HYPRE_Int[offd->Width()];
|
||||
for (std::map<HYPRE_Int, int>::iterator
|
||||
it = col_map.begin(); it != col_map.end(); ++it)
|
||||
{
|
||||
@@ -2863,9 +2901,8 @@ void ConformingProlongationOperator::Mult(const Vector &x, Vector &y) const
|
||||
MFEM_ASSERT(x.Size() == Width(), "");
|
||||
MFEM_ASSERT(y.Size() == Height(), "");
|
||||
|
||||
const double *xdata = x.GetData();
|
||||
double *ydata = y.GetData();
|
||||
x.Pull();
|
||||
const double *xdata = x.HostRead();
|
||||
double *ydata = y.HostWrite();
|
||||
const int m = external_ldofs.Size();
|
||||
|
||||
const int in_layout = 2; // 2 - input is ltdofs array
|
||||
@@ -2882,7 +2919,6 @@ void ConformingProlongationOperator::Mult(const Vector &x, Vector &y) const
|
||||
|
||||
const int out_layout = 0; // 0 - output is ldofs array
|
||||
gc.BcastEnd(ydata, out_layout);
|
||||
y.Push();
|
||||
}
|
||||
|
||||
void ConformingProlongationOperator::MultTranspose(
|
||||
@@ -2891,9 +2927,8 @@ void ConformingProlongationOperator::MultTranspose(
|
||||
MFEM_ASSERT(x.Size() == Height(), "");
|
||||
MFEM_ASSERT(y.Size() == Width(), "");
|
||||
|
||||
const double *xdata = x.GetData();
|
||||
double *ydata = y.GetData();
|
||||
x.Pull();
|
||||
const double *xdata = x.HostRead();
|
||||
double *ydata = y.HostWrite();
|
||||
const int m = external_ldofs.Size();
|
||||
|
||||
gc.ReduceBegin(xdata);
|
||||
@@ -2909,7 +2944,242 @@ void ConformingProlongationOperator::MultTranspose(
|
||||
|
||||
const int out_layout = 2; // 2 - output is an array on all ltdofs
|
||||
gc.ReduceEnd<double>(ydata, out_layout, GroupCommunicator::Sum);
|
||||
y.Push();
|
||||
}
|
||||
|
||||
DeviceConformingProlongationOperator::DeviceConformingProlongationOperator(
|
||||
const ParFiniteElementSpace &pfes) :
|
||||
ConformingProlongationOperator(pfes),
|
||||
mpi_gpu_aware(Device::GetGPUAwareMPI())
|
||||
{
|
||||
MFEM_ASSERT(pfes.Conforming(), "internal error");
|
||||
const SparseMatrix *R = pfes.GetRestrictionMatrix();
|
||||
MFEM_ASSERT(R->Finalized(), "");
|
||||
const int tdofs = R->Height();
|
||||
MFEM_ASSERT(tdofs == pfes.GetTrueVSize(), "");
|
||||
MFEM_ASSERT(tdofs == R->GetI()[tdofs], "");
|
||||
ltdof_ldof = Array<int>(const_cast<int*>(R->GetJ()), tdofs);
|
||||
ltdof_ldof.UseDevice();
|
||||
{
|
||||
Table nbr_ltdof;
|
||||
gc.GetNeighborLTDofTable(nbr_ltdof);
|
||||
const int nb_connections = nbr_ltdof.Size_of_connections();
|
||||
shr_ltdof.SetSize(nb_connections);
|
||||
shr_ltdof.CopyFrom(nbr_ltdof.GetJ());
|
||||
shr_buf.SetSize(nb_connections);
|
||||
shr_buf.UseDevice(true);
|
||||
shr_buf_offsets = nbr_ltdof.GetI();
|
||||
{
|
||||
Array<int> shr_ltdof(nbr_ltdof.GetJ(), nb_connections);
|
||||
Array<int> unique_ltdof(shr_ltdof);
|
||||
unique_ltdof.Sort();
|
||||
unique_ltdof.Unique();
|
||||
// Note: the next loop modifies the J array of nbr_ltdof
|
||||
for (int i = 0; i < shr_ltdof.Size(); i++)
|
||||
{
|
||||
shr_ltdof[i] = unique_ltdof.FindSorted(shr_ltdof[i]);
|
||||
MFEM_ASSERT(shr_ltdof[i] != -1, "internal error");
|
||||
}
|
||||
Table unique_shr;
|
||||
Transpose(shr_ltdof, unique_shr, unique_ltdof.Size());
|
||||
unq_ltdof = Array<int>(unique_ltdof, unique_ltdof.Size());
|
||||
unq_shr_i = Array<int>(unique_shr.GetI(), unique_shr.Size()+1);
|
||||
unq_shr_j = Array<int>(unique_shr.GetJ(), unique_shr.Size_of_connections());
|
||||
}
|
||||
delete [] nbr_ltdof.GetJ();
|
||||
nbr_ltdof.LoseData();
|
||||
}
|
||||
{
|
||||
Table nbr_ldof;
|
||||
gc.GetNeighborLDofTable(nbr_ldof);
|
||||
const int nb_connections = nbr_ldof.Size_of_connections();
|
||||
ext_ldof.SetSize(nb_connections);
|
||||
ext_ldof.CopyFrom(nbr_ldof.GetJ());
|
||||
ext_buf.SetSize(nb_connections);
|
||||
ext_buf.UseDevice(true);
|
||||
ext_buf_offsets = nbr_ldof.GetI();
|
||||
delete [] nbr_ldof.GetJ();
|
||||
nbr_ldof.LoseData();
|
||||
}
|
||||
const GroupTopology >opo = gc.GetGroupTopology();
|
||||
int req_counter = 0;
|
||||
for (int nbr = 1; nbr < gtopo.GetNumNeighbors(); nbr++)
|
||||
{
|
||||
const int send_offset = shr_buf_offsets[nbr];
|
||||
const int send_size = shr_buf_offsets[nbr+1] - send_offset;
|
||||
if (send_size > 0) { req_counter++; }
|
||||
|
||||
const int recv_offset = ext_buf_offsets[nbr];
|
||||
const int recv_size = ext_buf_offsets[nbr+1] - recv_offset;
|
||||
if (recv_size > 0) { req_counter++; }
|
||||
}
|
||||
requests = new MPI_Request[req_counter];
|
||||
}
|
||||
|
||||
static void ExtractSubVector(const int N,
|
||||
const Array<int> &indices,
|
||||
const Vector &in, Vector &out)
|
||||
{
|
||||
auto y = out.Write();
|
||||
const auto x = in.Read();
|
||||
const auto I = indices.Read();
|
||||
MFEM_FORALL(i, N, y[i] = x[I[i]];); // indices can be repeated
|
||||
}
|
||||
|
||||
void DeviceConformingProlongationOperator::BcastBeginCopy(
|
||||
const Vector &x) const
|
||||
{
|
||||
// shr_buf[i] = src[shr_ltdof[i]]
|
||||
if (shr_ltdof.Size() == 0) { return; }
|
||||
ExtractSubVector(shr_ltdof.Size(), shr_ltdof, x, shr_buf);
|
||||
// If the above kernel is executed asynchronously, we should wait for it to
|
||||
// complete
|
||||
if (mpi_gpu_aware) { Device::Synchronize(); }
|
||||
}
|
||||
|
||||
static void SetSubVector(const int N,
|
||||
const Array<int> &indices,
|
||||
const Vector &in, Vector &out)
|
||||
{
|
||||
auto y = out.Write();
|
||||
const auto x = in.Read();
|
||||
const auto I = indices.Read();
|
||||
MFEM_FORALL(i, N, y[I[i]] = x[i];);
|
||||
}
|
||||
|
||||
void DeviceConformingProlongationOperator::BcastLocalCopy(
|
||||
const Vector &x, Vector &y) const
|
||||
{
|
||||
// dst[ltdof_ldof[i]] = src[i]
|
||||
if (ltdof_ldof.Size() == 0) { return; }
|
||||
SetSubVector(ltdof_ldof.Size(), ltdof_ldof, x, y);
|
||||
}
|
||||
|
||||
void DeviceConformingProlongationOperator::BcastEndCopy(
|
||||
Vector &y) const
|
||||
{
|
||||
// dst[ext_ldof[i]] = ext_buf[i]
|
||||
if (ext_ldof.Size() == 0) { return; }
|
||||
SetSubVector(ext_ldof.Size(), ext_ldof, ext_buf, y);
|
||||
}
|
||||
|
||||
void DeviceConformingProlongationOperator::Mult(const Vector &x,
|
||||
Vector &y) const
|
||||
{
|
||||
const GroupTopology >opo = gc.GetGroupTopology();
|
||||
BcastBeginCopy(x); // copy to 'shr_buf'
|
||||
int req_counter = 0;
|
||||
for (int nbr = 1; nbr < gtopo.GetNumNeighbors(); nbr++)
|
||||
{
|
||||
const int send_offset = shr_buf_offsets[nbr];
|
||||
const int send_size = shr_buf_offsets[nbr+1] - send_offset;
|
||||
if (send_size > 0)
|
||||
{
|
||||
auto send_buf = mpi_gpu_aware ? shr_buf.Read() : shr_buf.HostRead();
|
||||
MPI_Isend(send_buf + send_offset, send_size, MPI_DOUBLE,
|
||||
gtopo.GetNeighborRank(nbr), 41822,
|
||||
gtopo.GetComm(), &requests[req_counter++]);
|
||||
}
|
||||
const int recv_offset = ext_buf_offsets[nbr];
|
||||
const int recv_size = ext_buf_offsets[nbr+1] - recv_offset;
|
||||
if (recv_size > 0)
|
||||
{
|
||||
auto recv_buf = mpi_gpu_aware ? ext_buf.Write() : ext_buf.HostWrite();
|
||||
MPI_Irecv(recv_buf + recv_offset, recv_size, MPI_DOUBLE,
|
||||
gtopo.GetNeighborRank(nbr), 41822,
|
||||
gtopo.GetComm(), &requests[req_counter++]);
|
||||
}
|
||||
}
|
||||
BcastLocalCopy(x, y);
|
||||
MPI_Waitall(req_counter, requests, MPI_STATUSES_IGNORE);
|
||||
BcastEndCopy(y); // copy from 'ext_buf'
|
||||
}
|
||||
|
||||
DeviceConformingProlongationOperator::~DeviceConformingProlongationOperator()
|
||||
{
|
||||
delete [] requests;
|
||||
delete [] ext_buf_offsets;
|
||||
delete [] shr_buf_offsets;
|
||||
}
|
||||
|
||||
void DeviceConformingProlongationOperator::ReduceBeginCopy(
|
||||
const Vector &x) const
|
||||
{
|
||||
// ext_buf[i] = src[ext_ldof[i]]
|
||||
if (ext_ldof.Size() == 0) { return; }
|
||||
ExtractSubVector(ext_ldof.Size(), ext_ldof, x, ext_buf);
|
||||
// If the above kernel is executed asynchronously, we should wait for it to
|
||||
// complete
|
||||
if (mpi_gpu_aware) { Device::Synchronize(); }
|
||||
}
|
||||
|
||||
void DeviceConformingProlongationOperator::ReduceLocalCopy(
|
||||
const Vector &x, Vector &y) const
|
||||
{
|
||||
// dst[i] = src[ltdof_ldof[i]]
|
||||
if (ltdof_ldof.Size() == 0) { return; }
|
||||
ExtractSubVector(ltdof_ldof.Size(), ltdof_ldof, x, y);
|
||||
}
|
||||
|
||||
static void AddSubVector(const int num_unique_dst_indices,
|
||||
const Array<int> &unique_dst_indices,
|
||||
const Array<int> &unique_to_src_offsets,
|
||||
const Array<int> &unique_to_src_indices,
|
||||
const Vector &src,
|
||||
Vector &dst)
|
||||
{
|
||||
auto y = dst.Write();
|
||||
const auto x = src.Read();
|
||||
const auto DST_I = unique_dst_indices.Read();
|
||||
const auto SRC_O = unique_to_src_offsets.Read();
|
||||
const auto SRC_I = unique_to_src_indices.Read();
|
||||
MFEM_FORALL(i, num_unique_dst_indices,
|
||||
{
|
||||
const int dst_idx = DST_I[i];
|
||||
double sum = y[dst_idx];
|
||||
const int end = SRC_O[i+1];
|
||||
for (int j = SRC_O[i]; j != end; ++j) { sum += x[SRC_I[j]]; }
|
||||
y[dst_idx] = sum;
|
||||
});
|
||||
}
|
||||
|
||||
void DeviceConformingProlongationOperator::ReduceEndAssemble(Vector &y) const
|
||||
{
|
||||
// dst[shr_ltdof[i]] += shr_buf[i]
|
||||
const int unq_ltdof_size = unq_ltdof.Size();
|
||||
if (unq_ltdof_size == 0) { return; }
|
||||
AddSubVector(unq_ltdof_size, unq_ltdof, unq_shr_i, unq_shr_j, shr_buf, y);
|
||||
}
|
||||
|
||||
void DeviceConformingProlongationOperator::MultTranspose(const Vector &x,
|
||||
Vector &y) const
|
||||
{
|
||||
const GroupTopology >opo = gc.GetGroupTopology();
|
||||
ReduceBeginCopy(x); // copy to 'ext_buf'
|
||||
int req_counter = 0;
|
||||
for (int nbr = 1; nbr < gtopo.GetNumNeighbors(); nbr++)
|
||||
{
|
||||
const int send_offset = ext_buf_offsets[nbr];
|
||||
const int send_size = ext_buf_offsets[nbr+1] - send_offset;
|
||||
if (send_size > 0)
|
||||
{
|
||||
auto send_buf = mpi_gpu_aware ? ext_buf.Read() : ext_buf.HostRead();
|
||||
MPI_Isend(send_buf + send_offset, send_size, MPI_DOUBLE,
|
||||
gtopo.GetNeighborRank(nbr), 41823,
|
||||
gtopo.GetComm(), &requests[req_counter++]);
|
||||
}
|
||||
const int recv_offset = shr_buf_offsets[nbr];
|
||||
const int recv_size = shr_buf_offsets[nbr+1] - recv_offset;
|
||||
if (recv_size > 0)
|
||||
{
|
||||
auto recv_buf = mpi_gpu_aware ? shr_buf.Write() : shr_buf.HostWrite();
|
||||
MPI_Irecv(recv_buf + recv_offset, recv_size, MPI_DOUBLE,
|
||||
gtopo.GetNeighborRank(nbr), 41823,
|
||||
gtopo.GetComm(), &requests[req_counter++]);
|
||||
}
|
||||
}
|
||||
ReduceLocalCopy(x, y);
|
||||
MPI_Waitall(req_counter, requests, MPI_STATUSES_IGNORE);
|
||||
ReduceEndAssemble(y); // assemble from 'shr_buf'
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
@@ -387,6 +387,52 @@ public:
|
||||
virtual void MultTranspose(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
/// Auxiliary device class used by ParFiniteElementSpace.
|
||||
class DeviceConformingProlongationOperator: public
|
||||
ConformingProlongationOperator
|
||||
{
|
||||
protected:
|
||||
bool mpi_gpu_aware;
|
||||
Array<int> shr_ltdof, ext_ldof;
|
||||
mutable Vector shr_buf, ext_buf;
|
||||
int *shr_buf_offsets, *ext_buf_offsets;
|
||||
Array<int> ltdof_ldof, unq_ltdof;
|
||||
Array<int> unq_shr_i, unq_shr_j;
|
||||
MPI_Request *requests;
|
||||
// Kernel: copy ltdofs from 'src' to 'shr_buf' - prepare for send.
|
||||
// shr_buf[i] = src[shr_ltdof[i]]
|
||||
void BcastBeginCopy(const Vector &src) const;
|
||||
|
||||
// Kernel: copy ltdofs from 'src' to ldofs in 'dst'.
|
||||
// dst[ltdof_ldof[i]] = src[i]
|
||||
void BcastLocalCopy(const Vector &src, Vector &dst) const;
|
||||
|
||||
// Kernel: copy ext. dofs from 'ext_buf' to 'dst' - after recv.
|
||||
// dst[ext_ldof[i]] = ext_buf[i]
|
||||
void BcastEndCopy(Vector &dst) const;
|
||||
|
||||
// Kernel: copy ext. dofs from 'src' to 'ext_buf' - prepare for send.
|
||||
// ext_buf[i] = src[ext_ldof[i]]
|
||||
void ReduceBeginCopy(const Vector &src) const;
|
||||
|
||||
// Kernel: copy owned ldofs from 'src' to ltdofs in 'dst'.
|
||||
// dst[i] = src[ltdof_ldof[i]]
|
||||
void ReduceLocalCopy(const Vector &src, Vector &dst) const;
|
||||
|
||||
// Kernel: assemble dofs from 'shr_buf' into to 'dst' - after recv.
|
||||
// dst[shr_ltdof[i]] += shr_buf[i]
|
||||
void ReduceEndAssemble(Vector &dst) const;
|
||||
|
||||
public:
|
||||
DeviceConformingProlongationOperator(const ParFiniteElementSpace &pfes);
|
||||
|
||||
virtual ~DeviceConformingProlongationOperator();
|
||||
|
||||
virtual void Mult(const Vector &x, Vector &y) const;
|
||||
|
||||
virtual void MultTranspose(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
#endif // MFEM_USE_MPI
|
||||
|
||||
+15
-14
@@ -367,10 +367,10 @@ void ParGridFunction::ProjectDiscCoefficient(Coefficient &coeff, AvgType type)
|
||||
GroupCommunicator &gcomm = pfes->GroupComm();
|
||||
gcomm.Reduce<int>(zones_per_vdof, GroupCommunicator::Sum);
|
||||
gcomm.Bcast(zones_per_vdof);
|
||||
// Accumulate for all tdofs.
|
||||
HypreParVector *tv = this->ParallelAssemble();
|
||||
this->Distribute(tv);
|
||||
delete tv;
|
||||
|
||||
// Accumulate for all vdofs.
|
||||
gcomm.Reduce<double>(data, GroupCommunicator::Sum);
|
||||
gcomm.Bcast<double>(data);
|
||||
|
||||
ComputeMeans(type, zones_per_vdof);
|
||||
}
|
||||
@@ -389,10 +389,10 @@ void ParGridFunction::ProjectDiscCoefficient(VectorCoefficient &vcoeff,
|
||||
GroupCommunicator &gcomm = pfes->GroupComm();
|
||||
gcomm.Reduce<int>(zones_per_vdof, GroupCommunicator::Sum);
|
||||
gcomm.Bcast(zones_per_vdof);
|
||||
// Accumulate for all tdofs.
|
||||
HypreParVector *tv = this->ParallelAssemble();
|
||||
this->Distribute(tv);
|
||||
delete tv;
|
||||
|
||||
// Accumulate for all vdofs.
|
||||
gcomm.Reduce<double>(data, GroupCommunicator::Sum);
|
||||
gcomm.Bcast<double>(data);
|
||||
|
||||
ComputeMeans(type, zones_per_vdof);
|
||||
}
|
||||
@@ -425,8 +425,8 @@ void ParGridFunction::ProjectBdrCoefficient(
|
||||
}
|
||||
else
|
||||
{
|
||||
// FIXME: same as the conforming case after 'cut-mesh-groups-dev-*' is
|
||||
// merged?
|
||||
// TODO: is this the same as the conforming case (after the merge of
|
||||
// cut-mesh-groups-dev)?
|
||||
ComputeMeans(ARITHMETIC, values_counter);
|
||||
}
|
||||
#ifdef MFEM_DEBUG
|
||||
@@ -469,8 +469,8 @@ void ParGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient &vcoeff,
|
||||
}
|
||||
else
|
||||
{
|
||||
// FIXME: same as the conforming case after 'cut-mesh-groups-dev-*' is
|
||||
// merged?
|
||||
// TODO: is this the same as the conforming case (after the merge of
|
||||
// cut-mesh-groups-dev)?
|
||||
ComputeMeans(ARITHMETIC, values_counter);
|
||||
}
|
||||
#ifdef MFEM_DEBUG
|
||||
@@ -487,16 +487,17 @@ void ParGridFunction::ProjectBdrCoefficientTangent(VectorCoefficient &vcoeff,
|
||||
|
||||
void ParGridFunction::Save(std::ostream &out) const
|
||||
{
|
||||
double *data_ = const_cast<double*>(HostRead());
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
if (pfes->GetDofSign(i) < 0) { data[i] = -data[i]; }
|
||||
if (pfes->GetDofSign(i) < 0) { data_[i] = -data_[i]; }
|
||||
}
|
||||
|
||||
GridFunction::Save(out);
|
||||
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
if (pfes->GetDofSign(i) < 0) { data[i] = -data[i]; }
|
||||
if (pfes->GetDofSign(i) < 0) { data_[i] = -data_[i]; }
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
+6
-6
@@ -956,13 +956,13 @@ double TMOP_Integrator::GetElementEnergy(const FiniteElement &el,
|
||||
Tpr->Attribute = T.Attribute;
|
||||
Tpr->GetPointMat().Transpose(PMatI); // PointMat = PMatI^T
|
||||
}
|
||||
// FIXME: computing the coefficients 'coeff1' and 'coeff0' in physical
|
||||
// coordinates means that, generally, the gradient and Hessian of the
|
||||
// TMOP_Integrator will depend on the derivatives of the coefficients.
|
||||
// TODO: computing the coefficients 'coeff1' and 'coeff0' in physical
|
||||
// coordinates means that, generally, the gradient and Hessian of the
|
||||
// TMOP_Integrator will depend on the derivatives of the coefficients.
|
||||
//
|
||||
// In some cases the coefficients are independent of any movement of
|
||||
// the physical coordinates (i.e. changes in 'elfun'), e.g. when the
|
||||
// coefficient is a ConstantCoefficient or a GridFunctionCoefficient.
|
||||
// In some cases the coefficients are independent of any movement of
|
||||
// the physical coordinates (i.e. changes in 'elfun'), e.g. when the
|
||||
// coefficient is a ConstantCoefficient or a GridFunctionCoefficient.
|
||||
|
||||
for (int i = 0; i < ir->GetNPoints(); i++)
|
||||
{
|
||||
|
||||
+5
-43
@@ -19,54 +19,12 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
BaseArray::BaseArray(int asize, int ainc, int elementsize)
|
||||
{
|
||||
if (asize > 0)
|
||||
{
|
||||
data = mfem::New<char>(asize * elementsize);
|
||||
size = allocsize = asize;
|
||||
}
|
||||
else
|
||||
{
|
||||
data = 0;
|
||||
size = allocsize = 0;
|
||||
}
|
||||
inc = ainc;
|
||||
}
|
||||
|
||||
BaseArray::~BaseArray()
|
||||
{
|
||||
if (allocsize > 0)
|
||||
{
|
||||
mfem::Delete((char*)data);
|
||||
}
|
||||
}
|
||||
|
||||
void BaseArray::GrowSize(int minsize, int elementsize)
|
||||
{
|
||||
void *p;
|
||||
int nsize = (inc > 0) ? abs(allocsize) + inc : 2 * abs(allocsize);
|
||||
if (nsize < minsize) { nsize = minsize; }
|
||||
|
||||
p = mfem::New<char>(nsize * elementsize);
|
||||
if (size > 0)
|
||||
{
|
||||
mfem::Memcpy(p, data, size * elementsize);
|
||||
}
|
||||
if (allocsize > 0)
|
||||
{
|
||||
mfem::Delete((char*)data);
|
||||
}
|
||||
data = p;
|
||||
allocsize = nsize;
|
||||
}
|
||||
|
||||
template <class T>
|
||||
void Array<T>::Print(std::ostream &out, int width) const
|
||||
{
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
out << ((T*)data)[i];
|
||||
out << data[i];
|
||||
if ( !((i+1) % width) || i+1 == size )
|
||||
{
|
||||
out << '\n';
|
||||
@@ -113,10 +71,12 @@ T Array<T>::Max() const
|
||||
|
||||
T max = operator[](0);
|
||||
for (int i = 1; i < size; i++)
|
||||
{
|
||||
if (max < operator[](i))
|
||||
{
|
||||
max = operator[](i);
|
||||
}
|
||||
}
|
||||
|
||||
return max;
|
||||
}
|
||||
@@ -128,10 +88,12 @@ T Array<T>::Min() const
|
||||
|
||||
T min = operator[](0);
|
||||
for (int i = 1; i < size; i++)
|
||||
{
|
||||
if (operator[](i) < min)
|
||||
{
|
||||
min = operator[](i);
|
||||
}
|
||||
}
|
||||
|
||||
return min;
|
||||
}
|
||||
|
||||
+188
-108
@@ -14,6 +14,7 @@
|
||||
|
||||
#include "../config/config.hpp"
|
||||
#include "mem_manager.hpp"
|
||||
#include "device.hpp"
|
||||
#include "error.hpp"
|
||||
#include "globals.hpp"
|
||||
|
||||
@@ -25,31 +26,6 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Base class for array container.
|
||||
class BaseArray
|
||||
{
|
||||
protected:
|
||||
/// Pointer to data
|
||||
void *data;
|
||||
/// Size of the array
|
||||
int size;
|
||||
/// Size of the allocated memory
|
||||
int allocsize;
|
||||
/** Increment of allocated memory on overflow,
|
||||
inc = 0 doubles the array */
|
||||
int inc;
|
||||
|
||||
BaseArray() { }
|
||||
/// Creates array of asize elements of size elementsize
|
||||
BaseArray(int asize, int ainc, int elmentsize);
|
||||
/// Free the allocated memory
|
||||
~BaseArray();
|
||||
/** Increases the allocsize of the array to be at least minsize.
|
||||
The current content of the array is copied to the newly allocated
|
||||
space. minsize must be > abs(allocsize). */
|
||||
void GrowSize(int minsize, int elementsize);
|
||||
};
|
||||
|
||||
template <class T>
|
||||
class Array;
|
||||
|
||||
@@ -65,70 +41,81 @@ void Swap(Array<T> &, Array<T> &);
|
||||
The elements can be accessed by the [] operator, the range is 0 to size-1.
|
||||
*/
|
||||
template <class T>
|
||||
class Array : public BaseArray
|
||||
class Array
|
||||
{
|
||||
protected:
|
||||
/// Pointer to data
|
||||
Memory<T> data;
|
||||
/// Size of the array
|
||||
int size;
|
||||
|
||||
inline void GrowSize(int minsize);
|
||||
|
||||
public:
|
||||
friend void Swap<T>(Array<T> &, Array<T> &);
|
||||
|
||||
/// Creates an empty array
|
||||
inline Array() : size(0) { data.Reset(); }
|
||||
|
||||
/// Creates array of asize elements
|
||||
explicit inline Array(int asize = 0, int ainc = 0)
|
||||
: BaseArray(asize, ainc, sizeof (T)) { }
|
||||
explicit inline Array(int asize)
|
||||
: size(asize) { asize > 0 ? data.New(asize) : data.Reset(); }
|
||||
|
||||
/** Creates array using an existing c-array of asize elements;
|
||||
allocsize is set to -asize to indicate that the data will not
|
||||
be deleted. */
|
||||
inline Array(T *_data, int asize, int ainc = 0)
|
||||
{ data = _data; size = asize; allocsize = -asize; inc = ainc; }
|
||||
inline Array(T *_data, int asize)
|
||||
{ data.Wrap(_data, asize, false); size = asize; }
|
||||
|
||||
/// Copy constructor: deep copy
|
||||
Array(const Array<T> &src)
|
||||
: BaseArray(src.size, 0, sizeof(T))
|
||||
{ mfem::Memcpy(data, src.data, size*sizeof(T)); }
|
||||
/** This method supports source arrays using any MemoryType. */
|
||||
inline Array(const Array &src);
|
||||
|
||||
/// Copy constructor (deep copy) from an Array of convertable type
|
||||
template <typename CT>
|
||||
Array(const Array<CT> &src)
|
||||
: BaseArray(src.Size(), 0, sizeof(T))
|
||||
{ for (int i = 0; i < size; i++) { (*this)[i] = T(src[i]); } }
|
||||
inline Array(const Array<CT> &src);
|
||||
|
||||
/// Destructor
|
||||
inline ~Array() { }
|
||||
inline ~Array() { data.Delete(); }
|
||||
|
||||
/// Assignment operator: deep copy
|
||||
Array<T> &operator=(const Array<T> &src) { src.Copy(*this); return *this; }
|
||||
|
||||
/// Assignment operator (deep copy) from an Array of convertable type
|
||||
template <typename CT>
|
||||
Array<T> &operator=(const Array<CT> &src)
|
||||
{
|
||||
SetSize(src.Size());
|
||||
for (int i = 0; i < size; i++) { (*this)[i] = T(src[i]); }
|
||||
return *this;
|
||||
}
|
||||
inline Array &operator=(const Array<CT> &src);
|
||||
|
||||
/// Return the data as 'T *'
|
||||
inline operator T *() { return (T *)data; }
|
||||
inline operator T *() { return data; }
|
||||
|
||||
/// Return the data as 'const T *'
|
||||
inline operator const T *() const { return (const T *)data; }
|
||||
inline operator const T *() const { return data; }
|
||||
|
||||
/// Returns the data
|
||||
inline T *GetData() { return (T *)data; }
|
||||
inline T *GetData() { return data; }
|
||||
/// Returns the data
|
||||
inline const T *GetData() const { return (T *)data; }
|
||||
inline const T *GetData() const { return data; }
|
||||
|
||||
/// Return a reference to the Memory object used by the Array.
|
||||
Memory<T> &GetMemory() { return data; }
|
||||
|
||||
/// Return a reference to the Memory object used by the Array, const version.
|
||||
const Memory<T> &GetMemory() const { return data; }
|
||||
|
||||
/// Return the device flag of the Memory object used by the Array
|
||||
bool UseDevice() const { return data.UseDevice(); }
|
||||
|
||||
/// Return true if the data will be deleted by the array
|
||||
inline bool OwnsData() const { return (allocsize > 0); }
|
||||
inline bool OwnsData() const { return data.OwnsHostPtr(); }
|
||||
|
||||
/// Changes the ownership of the data
|
||||
inline void StealData(T **p)
|
||||
{ *p = (T*)data; data = 0; size = allocsize = 0; }
|
||||
inline void StealData(T **p) { *p = data; data.Reset(); size = 0; }
|
||||
|
||||
/// NULL-ifies the data
|
||||
inline void LoseData() { data = 0; size = allocsize = 0; }
|
||||
inline void LoseData() { data.Reset(); size = 0; }
|
||||
|
||||
/// Make the Array own the data
|
||||
void MakeDataOwner() { allocsize = abs(allocsize); }
|
||||
void MakeDataOwner() const { data.SetHostPtrOwner(true); }
|
||||
|
||||
/// Logical size of the array
|
||||
inline int Size() const { return size; }
|
||||
@@ -139,13 +126,18 @@ public:
|
||||
/// Same as SetSize(int) plus initialize new entries with 'initval'
|
||||
inline void SetSize(int nsize, const T &initval);
|
||||
|
||||
/** @brief Resize the array to size @a nsize using MemoryType @a mt. Note
|
||||
that unlike the other versions of SetSize(), the current content of the
|
||||
array is not preserved. */
|
||||
inline void SetSize(int nsize, MemoryType mt);
|
||||
|
||||
/** Maximum number of entries the array can store without allocating more
|
||||
memory. */
|
||||
inline int Capacity() const { return abs(allocsize); }
|
||||
inline int Capacity() const { return data.Capacity(); }
|
||||
|
||||
/// Ensures that the allocated size is at least the given size.
|
||||
inline void Reserve(int capacity)
|
||||
{ if (capacity > abs(allocsize)) { GrowSize(capacity, sizeof(T)); } }
|
||||
{ if (capacity > Capacity()) { GrowSize(capacity); } }
|
||||
|
||||
/// Access element
|
||||
inline T & operator[](int i);
|
||||
@@ -188,11 +180,7 @@ public:
|
||||
inline void DeleteAll();
|
||||
|
||||
/// Create a copy of the current array
|
||||
inline void Copy(Array ©) const
|
||||
{
|
||||
copy.SetSize(Size());
|
||||
mfem::Memcpy(copy.GetData(), data, Size()*sizeof(T));
|
||||
}
|
||||
inline void Copy(Array ©) const;
|
||||
|
||||
/// Make this Array a reference to a pointer
|
||||
inline void MakeRef(T *, int);
|
||||
@@ -200,7 +188,7 @@ public:
|
||||
/// Make this Array a reference to 'master'
|
||||
inline void MakeRef(const Array &master);
|
||||
|
||||
inline void GetSubArray(int offset, int sa_size, Array<T> &sa);
|
||||
inline void GetSubArray(int offset, int sa_size, Array<T> &sa) const;
|
||||
|
||||
/// Prints array to stream with width elements per row
|
||||
void Print(std::ostream &out = mfem::out, int width = 4) const;
|
||||
@@ -235,18 +223,18 @@ public:
|
||||
T Min() const;
|
||||
|
||||
/// Sorts the array. This requires operator< to be defined for T.
|
||||
void Sort() { std::sort((T*) data, (T*) data + size); }
|
||||
void Sort() { std::sort((T*)data, data + size); }
|
||||
|
||||
/// Sorts the array using the supplied comparison function object.
|
||||
template<class Compare>
|
||||
void Sort(Compare cmp) { std::sort((T*) data, (T*) data + size, cmp); }
|
||||
void Sort(Compare cmp) { std::sort((T*)data, data + size, cmp); }
|
||||
|
||||
/** Removes duplicities from a sorted array. This requires operator== to be
|
||||
defined for T. */
|
||||
void Unique()
|
||||
{
|
||||
T* end = std::unique((T*) data, (T*) data + size);
|
||||
SetSize(end - (T*) data);
|
||||
T* end = std::unique((T*)data, data + size);
|
||||
SetSize(end - data);
|
||||
}
|
||||
|
||||
/// return true if the array is sorted.
|
||||
@@ -266,11 +254,41 @@ public:
|
||||
template <typename U>
|
||||
inline void CopyTo(U *dest) { std::copy(begin(), end(), dest); }
|
||||
|
||||
template <typename U>
|
||||
inline void CopyFrom(const U *src)
|
||||
{ std::memcpy(begin(), src, MemoryUsage()); }
|
||||
|
||||
// STL-like begin/end
|
||||
inline T* begin() const { return (T*) data; }
|
||||
inline T* end() const { return (T*) data + size; }
|
||||
inline T* begin() { return data; }
|
||||
inline T* end() { return data + size; }
|
||||
inline const T* begin() const { return data; }
|
||||
inline const T* end() const { return data + size; }
|
||||
|
||||
long MemoryUsage() const { return Capacity() * sizeof(T); }
|
||||
|
||||
/// Shortcut for mfem::Read(a.GetMemory(), a.Size(), on_dev).
|
||||
const T *Read(bool on_dev = true) const
|
||||
{ return mfem::Read(data, size, on_dev); }
|
||||
|
||||
/// Shortcut for mfem::Read(a.GetMemory(), a.Size(), false).
|
||||
const T *HostRead() const
|
||||
{ return mfem::Read(data, size, false); }
|
||||
|
||||
/// Shortcut for mfem::Write(a.GetMemory(), a.Size(), on_dev).
|
||||
T *Write(bool on_dev = true)
|
||||
{ return mfem::Write(data, size, on_dev); }
|
||||
|
||||
/// Shortcut for mfem::Write(a.GetMemory(), a.Size(), false).
|
||||
T *HostWrite()
|
||||
{ return mfem::Write(data, size, false); }
|
||||
|
||||
/// Shortcut for mfem::ReadWrite(a.GetMemory(), a.Size(), on_dev).
|
||||
T *ReadWrite(bool on_dev = true)
|
||||
{ return mfem::ReadWrite(data, size, on_dev); }
|
||||
|
||||
/// Shortcut for mfem::ReadWrite(a.GetMemory(), a.Size(), false).
|
||||
T *HostReadWrite()
|
||||
{ return mfem::ReadWrite(data, size, false); }
|
||||
};
|
||||
|
||||
template <class T>
|
||||
@@ -278,7 +296,9 @@ inline bool operator==(const Array<T> &LHS, const Array<T> &RHS)
|
||||
{
|
||||
if ( LHS.Size() != RHS.Size() ) { return false; }
|
||||
for (int i=0; i<LHS.Size(); i++)
|
||||
{
|
||||
if ( LHS[i] != RHS[i] ) { return false; }
|
||||
}
|
||||
return true;
|
||||
}
|
||||
|
||||
@@ -565,17 +585,51 @@ inline void Swap(Array<T> &a, Array<T> &b)
|
||||
{
|
||||
Swap(a.data, b.data);
|
||||
Swap(a.size, b.size);
|
||||
Swap(a.allocsize, b.allocsize);
|
||||
Swap(a.inc, b.inc);
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline Array<T>::Array(const Array &src)
|
||||
: size(src.Size())
|
||||
{
|
||||
size > 0 ? data.New(size, src.data.GetMemoryType()) : data.Reset();
|
||||
data.CopyFrom(src.data, size);
|
||||
data.UseDevice(src.data.UseDevice());
|
||||
}
|
||||
|
||||
template <typename T> template <typename CT>
|
||||
inline Array<T>::Array(const Array<CT> &src)
|
||||
: size(src.Size())
|
||||
{
|
||||
size > 0 ? data.New(size) : data.Reset();
|
||||
for (int i = 0; i < size; i++) { (*this)[i] = T(src[i]); }
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::GrowSize(int minsize)
|
||||
{
|
||||
const int nsize = std::max(minsize, 2 * data.Capacity());
|
||||
Memory<T> p(nsize, data.GetMemoryType());
|
||||
p.CopyFrom(data, size);
|
||||
p.UseDevice(data.UseDevice());
|
||||
data.Delete();
|
||||
data = p;
|
||||
}
|
||||
|
||||
template <typename T> template <typename CT>
|
||||
inline Array<T> &Array<T>::operator=(const Array<CT> &src)
|
||||
{
|
||||
SetSize(src.Size());
|
||||
for (int i = 0; i < size; i++) { (*this)[i] = T(src[i]); }
|
||||
return *this;
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::SetSize(int nsize)
|
||||
{
|
||||
MFEM_ASSERT( nsize>=0, "Size must be non-negative. It is " << nsize );
|
||||
if (nsize > abs(allocsize))
|
||||
if (nsize > Capacity())
|
||||
{
|
||||
GrowSize(nsize, sizeof(T));
|
||||
GrowSize(nsize);
|
||||
}
|
||||
size = nsize;
|
||||
}
|
||||
@@ -586,24 +640,51 @@ inline void Array<T>::SetSize(int nsize, const T &initval)
|
||||
MFEM_ASSERT( nsize>=0, "Size must be non-negative. It is " << nsize );
|
||||
if (nsize > size)
|
||||
{
|
||||
if (nsize > abs(allocsize))
|
||||
if (nsize > Capacity())
|
||||
{
|
||||
GrowSize(nsize, sizeof(T));
|
||||
GrowSize(nsize);
|
||||
}
|
||||
for (int i = size; i < nsize; i++)
|
||||
{
|
||||
((T*)data)[i] = initval;
|
||||
data[i] = initval;
|
||||
}
|
||||
}
|
||||
size = nsize;
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::SetSize(int nsize, MemoryType mt)
|
||||
{
|
||||
MFEM_ASSERT(nsize >= 0, "invalid new size: " << nsize);
|
||||
if (mt == data.GetMemoryType())
|
||||
{
|
||||
if (nsize <= Capacity())
|
||||
{
|
||||
size = nsize;
|
||||
return;
|
||||
}
|
||||
}
|
||||
const bool use_dev = data.UseDevice();
|
||||
data.Delete();
|
||||
if (nsize > 0)
|
||||
{
|
||||
data.New(nsize, mt);
|
||||
size = nsize;
|
||||
}
|
||||
else
|
||||
{
|
||||
data.Reset();
|
||||
size = 0;
|
||||
}
|
||||
data.UseDevice(use_dev);
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline T &Array<T>::operator[](int i)
|
||||
{
|
||||
MFEM_ASSERT( i>=0 && i<size,
|
||||
"Access element " << i << " of array, size = " << size );
|
||||
return ((T*)data)[i];
|
||||
return data[i];
|
||||
}
|
||||
|
||||
template <class T>
|
||||
@@ -611,14 +692,14 @@ inline const T &Array<T>::operator[](int i) const
|
||||
{
|
||||
MFEM_ASSERT( i>=0 && i<size,
|
||||
"Access element " << i << " of array, size = " << size );
|
||||
return ((T*)data)[i];
|
||||
return data[i];
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline int Array<T>::Append(const T &el)
|
||||
{
|
||||
SetSize(size+1);
|
||||
((T*)data)[size-1] = el;
|
||||
data[size-1] = el;
|
||||
return size;
|
||||
}
|
||||
|
||||
@@ -630,7 +711,7 @@ inline int Array<T>::Append(const T *els, int nels)
|
||||
SetSize(size + nels);
|
||||
for (int i = 0; i < nels; i++)
|
||||
{
|
||||
((T*)data)[old_size+i] = els[i];
|
||||
data[old_size+i] = els[i];
|
||||
}
|
||||
return size;
|
||||
}
|
||||
@@ -641,9 +722,9 @@ inline int Array<T>::Prepend(const T &el)
|
||||
SetSize(size+1);
|
||||
for (int i = size-1; i > 0; i--)
|
||||
{
|
||||
((T*)data)[i] = ((T*)data)[i-1];
|
||||
data[i] = data[i-1];
|
||||
}
|
||||
((T*)data)[0] = el;
|
||||
data[0] = el;
|
||||
return size;
|
||||
}
|
||||
|
||||
@@ -651,21 +732,21 @@ template <class T>
|
||||
inline T &Array<T>::Last()
|
||||
{
|
||||
MFEM_ASSERT(size > 0, "Array size is zero: " << size);
|
||||
return ((T*)data)[size-1];
|
||||
return data[size-1];
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline const T &Array<T>::Last() const
|
||||
{
|
||||
MFEM_ASSERT(size > 0, "Array size is zero: " << size);
|
||||
return ((T*)data)[size-1];
|
||||
return data[size-1];
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline int Array<T>::Union(const T &el)
|
||||
{
|
||||
int i = 0;
|
||||
while ((i < size) && (((T*)data)[i] != el)) { i++; }
|
||||
while ((i < size) && (data[i] != el)) { i++; }
|
||||
if (i == size)
|
||||
{
|
||||
Append(el);
|
||||
@@ -678,7 +759,7 @@ inline int Array<T>::Find(const T &el) const
|
||||
{
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
if (((T*)data)[i] == el) { return i; }
|
||||
if (data[i] == el) { return i; }
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
@@ -686,7 +767,7 @@ inline int Array<T>::Find(const T &el) const
|
||||
template <class T>
|
||||
inline int Array<T>::FindSorted(const T &el) const
|
||||
{
|
||||
const T *begin = (const T*) data, *end = begin + size;
|
||||
const T *begin = data, *end = begin + size;
|
||||
const T* first = std::lower_bound(begin, end, el);
|
||||
if (first == end || !(*first == el)) { return -1; }
|
||||
return first - begin;
|
||||
@@ -697,11 +778,11 @@ inline void Array<T>::DeleteFirst(const T &el)
|
||||
{
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
if (((T*)data)[i] == el)
|
||||
if (data[i] == el)
|
||||
{
|
||||
for (i++; i < size; i++)
|
||||
{
|
||||
((T*)data)[i-1] = ((T*)data)[i];
|
||||
data[i-1] = data[i];
|
||||
}
|
||||
size--;
|
||||
return;
|
||||
@@ -712,41 +793,40 @@ inline void Array<T>::DeleteFirst(const T &el)
|
||||
template <class T>
|
||||
inline void Array<T>::DeleteAll()
|
||||
{
|
||||
if (allocsize > 0)
|
||||
{
|
||||
mfem::Delete((char*)data);
|
||||
}
|
||||
data = NULL;
|
||||
size = allocsize = 0;
|
||||
const bool use_dev = data.UseDevice();
|
||||
data.Delete();
|
||||
data.Reset();
|
||||
size = 0;
|
||||
data.UseDevice(use_dev);
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline void Array<T>::Copy(Array ©) const
|
||||
{
|
||||
copy.SetSize(Size(), data.GetMemoryType());
|
||||
data.CopyTo(copy.data, Size());
|
||||
copy.data.UseDevice(data.UseDevice());
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::MakeRef(T *p, int s)
|
||||
{
|
||||
if (allocsize > 0)
|
||||
{
|
||||
mfem::Delete((char*)data);
|
||||
}
|
||||
data = p;
|
||||
data.Delete();
|
||||
data.Wrap(p, s, false);
|
||||
size = s;
|
||||
allocsize = -s;
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::MakeRef(const Array &master)
|
||||
{
|
||||
if (allocsize > 0)
|
||||
{
|
||||
mfem::Delete((char*)data);
|
||||
}
|
||||
data = master.data;
|
||||
data.Delete();
|
||||
data = master.data; // note: copies the device flag
|
||||
size = master.size;
|
||||
allocsize = -abs(master.allocsize);
|
||||
inc = master.inc;
|
||||
data.ClearOwnerFlags();
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::GetSubArray(int offset, int sa_size, Array<T> &sa)
|
||||
inline void Array<T>::GetSubArray(int offset, int sa_size, Array<T> &sa) const
|
||||
{
|
||||
sa.SetSize(sa_size);
|
||||
for (int i = 0; i < sa_size; i++)
|
||||
@@ -760,14 +840,14 @@ inline void Array<T>::operator=(const T &a)
|
||||
{
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
((T*)data)[i] = a;
|
||||
data[i] = a;
|
||||
}
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::Assign(const T *p)
|
||||
{
|
||||
memcpy(data, p, Size()*sizeof(T));
|
||||
data.CopyFromHost(p, Size());
|
||||
}
|
||||
|
||||
|
||||
|
||||
@@ -513,6 +513,78 @@ void GroupCommunicator::SetLTDofTable(const Array<int> &ldof_ltdof)
|
||||
group_ltdof.ShiftUpI();
|
||||
}
|
||||
|
||||
void GroupCommunicator::GetNeighborLTDofTable(Table &nbr_ltdof) const
|
||||
{
|
||||
nbr_ltdof.MakeI(nbr_send_groups.Size());
|
||||
for (int nbr = 1; nbr < nbr_send_groups.Size(); nbr++)
|
||||
{
|
||||
const int num_send_groups = nbr_send_groups.RowSize(nbr);
|
||||
if (num_send_groups > 0)
|
||||
{
|
||||
const int *grp_list = nbr_send_groups.GetRow(nbr);
|
||||
for (int i = 0; i < num_send_groups; i++)
|
||||
{
|
||||
const int group = grp_list[i];
|
||||
const int nltdofs = group_ltdof.RowSize(group);
|
||||
nbr_ltdof.AddColumnsInRow(nbr, nltdofs);
|
||||
}
|
||||
}
|
||||
}
|
||||
nbr_ltdof.MakeJ();
|
||||
for (int nbr = 1; nbr < nbr_send_groups.Size(); nbr++)
|
||||
{
|
||||
const int num_send_groups = nbr_send_groups.RowSize(nbr);
|
||||
if (num_send_groups > 0)
|
||||
{
|
||||
const int *grp_list = nbr_send_groups.GetRow(nbr);
|
||||
for (int i = 0; i < num_send_groups; i++)
|
||||
{
|
||||
const int group = grp_list[i];
|
||||
const int nltdofs = group_ltdof.RowSize(group);
|
||||
const int *ltdofs = group_ltdof.GetRow(group);
|
||||
nbr_ltdof.AddConnections(nbr, ltdofs, nltdofs);
|
||||
}
|
||||
}
|
||||
}
|
||||
nbr_ltdof.ShiftUpI();
|
||||
}
|
||||
|
||||
void GroupCommunicator::GetNeighborLDofTable(Table &nbr_ldof) const
|
||||
{
|
||||
nbr_ldof.MakeI(nbr_recv_groups.Size());
|
||||
for (int nbr = 1; nbr < nbr_recv_groups.Size(); nbr++)
|
||||
{
|
||||
const int num_recv_groups = nbr_recv_groups.RowSize(nbr);
|
||||
if (num_recv_groups > 0)
|
||||
{
|
||||
const int *grp_list = nbr_recv_groups.GetRow(nbr);
|
||||
for (int i = 0; i < num_recv_groups; i++)
|
||||
{
|
||||
const int group = grp_list[i];
|
||||
const int nldofs = group_ldof.RowSize(group);
|
||||
nbr_ldof.AddColumnsInRow(nbr, nldofs);
|
||||
}
|
||||
}
|
||||
}
|
||||
nbr_ldof.MakeJ();
|
||||
for (int nbr = 1; nbr < nbr_recv_groups.Size(); nbr++)
|
||||
{
|
||||
const int num_recv_groups = nbr_recv_groups.RowSize(nbr);
|
||||
if (num_recv_groups > 0)
|
||||
{
|
||||
const int *grp_list = nbr_recv_groups.GetRow(nbr);
|
||||
for (int i = 0; i < num_recv_groups; i++)
|
||||
{
|
||||
const int group = grp_list[i];
|
||||
const int nldofs = group_ldof.RowSize(group);
|
||||
const int *ldofs = group_ldof.GetRow(group);
|
||||
nbr_ldof.AddConnections(nbr, ldofs, nldofs);
|
||||
}
|
||||
}
|
||||
}
|
||||
nbr_ldof.ShiftUpI();
|
||||
}
|
||||
|
||||
template <class T>
|
||||
T *GroupCommunicator::CopyGroupToBuffer(const T *ldata, T *buf, int group,
|
||||
int layout) const
|
||||
|
||||
@@ -179,6 +179,12 @@ public:
|
||||
/// Get a const reference to the associated GroupTopology object
|
||||
const GroupTopology &GetGroupTopology() const { return gtopo; }
|
||||
|
||||
/// Dofs to be sent to communication neighbors
|
||||
void GetNeighborLTDofTable(Table &nbr_ltdof) const;
|
||||
|
||||
/// Dofs to be received from communication neighbors
|
||||
void GetNeighborLDofTable(Table &nbr_ldof) const;
|
||||
|
||||
/** @brief Data structure on which we define reduce operations.
|
||||
|
||||
The data is associated with (and the operation is performed on) one group
|
||||
|
||||
+61
-13
@@ -15,11 +15,15 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// Internal debug option, useful for tracking CUDA allocations, deallocations
|
||||
// and transfers.
|
||||
// #define MFEM_TRACK_CUDA_MEM
|
||||
|
||||
#ifdef MFEM_USE_CUDA
|
||||
void mfem_cuda_error(cudaError_t err, const char *expr, const char *func,
|
||||
const char *file, int line)
|
||||
{
|
||||
mfem::err << "CUDA error: (" << expr << ") failed with error:\n --> "
|
||||
mfem::err << "\n\nCUDA error: (" << expr << ") failed with error:\n --> "
|
||||
<< cudaGetErrorString(err)
|
||||
<< "\n ... in function: " << func
|
||||
<< "\n ... in file: " << file << ':' << line << '\n';
|
||||
@@ -30,7 +34,14 @@ void mfem_cuda_error(cudaError_t err, const char *expr, const char *func,
|
||||
void* CuMemAlloc(void** dptr, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_CUDA
|
||||
MFEM_CUDA_CHECK(cudaMalloc(dptr, bytes));
|
||||
#ifdef MFEM_TRACK_CUDA_MEM
|
||||
mfem::out << "CuMemAlloc(): allocating " << bytes << " bytes ... "
|
||||
<< std::flush;
|
||||
#endif
|
||||
MFEM_GPU_CHECK(cudaMalloc(dptr, bytes));
|
||||
#ifdef MFEM_TRACK_CUDA_MEM
|
||||
mfem::out << "done: " << *dptr << std::endl;
|
||||
#endif
|
||||
#endif
|
||||
return *dptr;
|
||||
}
|
||||
@@ -38,7 +49,14 @@ void* CuMemAlloc(void** dptr, size_t bytes)
|
||||
void* CuMemFree(void *dptr)
|
||||
{
|
||||
#ifdef MFEM_USE_CUDA
|
||||
MFEM_CUDA_CHECK(cudaFree(dptr));
|
||||
#ifdef MFEM_TRACK_CUDA_MEM
|
||||
mfem::out << "CuMemFree(): deallocating memory @ " << dptr << " ... "
|
||||
<< std::flush;
|
||||
#endif
|
||||
MFEM_GPU_CHECK(cudaFree(dptr));
|
||||
#ifdef MFEM_TRACK_CUDA_MEM
|
||||
mfem::out << "done." << std::endl;
|
||||
#endif
|
||||
#endif
|
||||
return dptr;
|
||||
}
|
||||
@@ -46,7 +64,14 @@ void* CuMemFree(void *dptr)
|
||||
void* CuMemcpyHtoD(void* dst, const void* src, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_CUDA
|
||||
MFEM_CUDA_CHECK(cudaMemcpy(dst, src, bytes, cudaMemcpyHostToDevice));
|
||||
#ifdef MFEM_TRACK_CUDA_MEM
|
||||
mfem::out << "CuMemcpyHtoD(): copying " << bytes << " bytes from "
|
||||
<< src << " to " << dst << " ... " << std::flush;
|
||||
#endif
|
||||
MFEM_GPU_CHECK(cudaMemcpy(dst, src, bytes, cudaMemcpyHostToDevice));
|
||||
#ifdef MFEM_TRACK_CUDA_MEM
|
||||
mfem::out << "done." << std::endl;
|
||||
#endif
|
||||
#endif
|
||||
return dst;
|
||||
}
|
||||
@@ -54,41 +79,64 @@ void* CuMemcpyHtoD(void* dst, const void* src, size_t bytes)
|
||||
void* CuMemcpyHtoDAsync(void* dst, const void* src, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_CUDA
|
||||
MFEM_CUDA_CHECK(cudaMemcpyAsync(dst, src, bytes, cudaMemcpyHostToDevice));
|
||||
MFEM_GPU_CHECK(cudaMemcpyAsync(dst, src, bytes, cudaMemcpyHostToDevice));
|
||||
#endif
|
||||
return dst;
|
||||
}
|
||||
|
||||
void* CuMemcpyDtoD(void* dst, void* src, size_t bytes)
|
||||
void* CuMemcpyDtoD(void *dst, const void *src, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_CUDA
|
||||
MFEM_CUDA_CHECK(cudaMemcpy(dst, src, bytes, cudaMemcpyDeviceToDevice));
|
||||
#ifdef MFEM_TRACK_CUDA_MEM
|
||||
mfem::out << "CuMemcpyDtoD(): copying " << bytes << " bytes from "
|
||||
<< src << " to " << dst << " ... " << std::flush;
|
||||
#endif
|
||||
MFEM_GPU_CHECK(cudaMemcpy(dst, src, bytes, cudaMemcpyDeviceToDevice));
|
||||
#ifdef MFEM_TRACK_CUDA_MEM
|
||||
mfem::out << "done." << std::endl;
|
||||
#endif
|
||||
#endif
|
||||
return dst;
|
||||
}
|
||||
|
||||
void* CuMemcpyDtoDAsync(void* dst, void* src, size_t bytes)
|
||||
void* CuMemcpyDtoDAsync(void* dst, const void *src, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_CUDA
|
||||
MFEM_CUDA_CHECK(cudaMemcpyAsync(dst, src, bytes, cudaMemcpyDeviceToDevice));
|
||||
MFEM_GPU_CHECK(cudaMemcpyAsync(dst, src, bytes, cudaMemcpyDeviceToDevice));
|
||||
#endif
|
||||
return dst;
|
||||
}
|
||||
|
||||
void* CuMemcpyDtoH(void *dst, void *src, size_t bytes)
|
||||
void* CuMemcpyDtoH(void *dst, const void *src, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_CUDA
|
||||
MFEM_CUDA_CHECK(cudaMemcpy(dst, src, bytes, cudaMemcpyDeviceToHost));
|
||||
#ifdef MFEM_TRACK_CUDA_MEM
|
||||
mfem::out << "CuMemcpyDtoH(): copying " << bytes << " bytes from "
|
||||
<< src << " to " << dst << " ... " << std::flush;
|
||||
#endif
|
||||
MFEM_GPU_CHECK(cudaMemcpy(dst, src, bytes, cudaMemcpyDeviceToHost));
|
||||
#ifdef MFEM_TRACK_CUDA_MEM
|
||||
mfem::out << "done." << std::endl;
|
||||
#endif
|
||||
#endif
|
||||
return dst;
|
||||
}
|
||||
|
||||
void* CuMemcpyDtoHAsync(void* dst, void* src, size_t bytes, void *s)
|
||||
void* CuMemcpyDtoHAsync(void *dst, const void *src, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_CUDA
|
||||
MFEM_CUDA_CHECK(cudaMemcpyAsync(dst, src, bytes, cudaMemcpyDeviceToHost));
|
||||
MFEM_GPU_CHECK(cudaMemcpyAsync(dst, src, bytes, cudaMemcpyDeviceToHost));
|
||||
#endif
|
||||
return dst;
|
||||
}
|
||||
|
||||
int CuGetDeviceCount()
|
||||
{
|
||||
int num_gpus = -1;
|
||||
#ifdef MFEM_USE_CUDA
|
||||
MFEM_GPU_CHECK(cudaGetDeviceCount(&num_gpus));
|
||||
#endif
|
||||
return num_gpus;
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
+31
-12
@@ -24,12 +24,12 @@
|
||||
#define MFEM_CUDA_BLOCKS 256
|
||||
|
||||
#ifdef MFEM_USE_CUDA
|
||||
#define MFEM_ATTR_DEVICE __device__
|
||||
#define MFEM_ATTR_HOST_DEVICE __host__ __device__
|
||||
// Define a CUDA error check macro, MFEM_CUDA_CHECK(x), where x returns/is of
|
||||
#define MFEM_DEVICE __device__
|
||||
#define MFEM_HOST_DEVICE __host__ __device__
|
||||
// Define a CUDA error check macro, MFEM_GPU_CHECK(x), where x returns/is of
|
||||
// type 'cudaError_t'. This macro evaluates 'x' and raises an error if the
|
||||
// result is not cudaSuccess.
|
||||
#define MFEM_CUDA_CHECK(x) \
|
||||
#define MFEM_GPU_CHECK(x) \
|
||||
do \
|
||||
{ \
|
||||
cudaError_t err = (x); \
|
||||
@@ -39,17 +39,33 @@
|
||||
} \
|
||||
} \
|
||||
while (0)
|
||||
#else // MFEM_USE_CUDA
|
||||
#define MFEM_ATTR_DEVICE
|
||||
#define MFEM_ATTR_HOST_DEVICE
|
||||
#define MFEM_DEVICE_SYNC MFEM_GPU_CHECK(cudaDeviceSynchronize())
|
||||
#else
|
||||
#define MFEM_DEVICE
|
||||
#define MFEM_HOST_DEVICE
|
||||
#define MFEM_DEVICE_SYNC
|
||||
#endif // MFEM_USE_CUDA
|
||||
|
||||
// Define the MFEM inner threading macros
|
||||
#if defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__)
|
||||
#define MFEM_SHARED __shared__
|
||||
#define MFEM_SYNC_THREAD __syncthreads()
|
||||
#define MFEM_THREAD_ID(k) threadIdx.k
|
||||
#define MFEM_THREAD_SIZE(k) blockDim.k
|
||||
#define MFEM_FOREACH_THREAD(i,k,N) for(int i=threadIdx.k; i<N; i+=blockDim.k)
|
||||
#else
|
||||
#define MFEM_SHARED
|
||||
#define MFEM_SYNC_THREAD
|
||||
#define MFEM_THREAD_ID(k) 0
|
||||
#define MFEM_THREAD_SIZE(k) 1
|
||||
#define MFEM_FOREACH_THREAD(i,k,N) for(int i=0; i<N; i++)
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
#ifdef MFEM_USE_CUDA
|
||||
// Function used by the macro MFEM_CUDA_CHECK.
|
||||
// Function used by the macro MFEM_GPU_CHECK.
|
||||
void mfem_cuda_error(cudaError_t err, const char *expr, const char *func,
|
||||
const char *file, int line);
|
||||
#endif
|
||||
@@ -67,16 +83,19 @@ void* CuMemcpyHtoD(void *d_dst, const void *h_src, size_t bytes);
|
||||
void* CuMemcpyHtoDAsync(void *d_dst, const void *h_src, size_t bytes);
|
||||
|
||||
/// Copies memory from Device to Device
|
||||
void* CuMemcpyDtoD(void *d_dst, void *d_src, size_t bytes);
|
||||
void* CuMemcpyDtoD(void *d_dst, const void *d_src, size_t bytes);
|
||||
|
||||
/// Copies memory from Device to Device
|
||||
void* CuMemcpyDtoDAsync(void *d_dst, void *d_src, size_t bytes);
|
||||
void* CuMemcpyDtoDAsync(void *d_dst, const void *d_src, size_t bytes);
|
||||
|
||||
/// Copies memory from Device to Host
|
||||
void* CuMemcpyDtoH(void *h_dst, void *d_src, size_t bytes);
|
||||
void* CuMemcpyDtoH(void *h_dst, const void *d_src, size_t bytes);
|
||||
|
||||
/// Copies memory from Device to Host
|
||||
void* CuMemcpyDtoHAsync(void *h_dst, void *d_src, size_t bytes);
|
||||
void* CuMemcpyDtoHAsync(void *h_dst, const void *d_src, size_t bytes);
|
||||
|
||||
/// Get the number of CUDA devices
|
||||
int CuGetDeviceCount();
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
|
||||
+68
-11
@@ -24,12 +24,16 @@ namespace mfem
|
||||
namespace internal
|
||||
{
|
||||
|
||||
OccaDevice occaDevice;
|
||||
#ifdef MFEM_USE_OCCA
|
||||
// Default occa::device used by MFEM.
|
||||
occa::device occaDevice;
|
||||
#endif
|
||||
|
||||
// Backends listed by priority, high to low:
|
||||
static const Backend::Id backend_list[Backend::NUM_BACKENDS] =
|
||||
{
|
||||
Backend::OCCA_CUDA, Backend::RAJA_CUDA, Backend::CUDA,
|
||||
Backend::HIP,
|
||||
Backend::OCCA_OMP, Backend::RAJA_OMP, Backend::OMP,
|
||||
Backend::OCCA_CPU, Backend::RAJA_CPU, Backend::CPU
|
||||
};
|
||||
@@ -37,12 +41,22 @@ static const Backend::Id backend_list[Backend::NUM_BACKENDS] =
|
||||
// Backend names listed by priority, high to low:
|
||||
static const char *backend_name[Backend::NUM_BACKENDS] =
|
||||
{
|
||||
"occa-cuda", "raja-cuda", "cuda", "occa-omp", "raja-omp", "omp",
|
||||
"occa-cuda", "raja-cuda", "cuda", "hip", "occa-omp", "raja-omp", "omp",
|
||||
"occa-cpu", "raja-cpu", "cpu"
|
||||
};
|
||||
|
||||
} // namespace mfem::internal
|
||||
|
||||
|
||||
// Initialize the unique global Device variable.
|
||||
Device Device::device_singleton;
|
||||
|
||||
|
||||
Device::~Device()
|
||||
{
|
||||
if (destroy_mm) { mm.Destroy(); }
|
||||
}
|
||||
|
||||
void Device::Configure(const std::string &device, const int dev)
|
||||
{
|
||||
std::map<std::string, Backend::Id> bmap;
|
||||
@@ -64,18 +78,22 @@ void Device::Configure(const std::string &device, const int dev)
|
||||
}
|
||||
|
||||
// OCCA_CUDA needs CUDA or RAJA_CUDA:
|
||||
Get().allowed_backends = Get().backends;
|
||||
if (Allows(Backend::OCCA_CUDA) && !Allows(Backend::RAJA_CUDA))
|
||||
{
|
||||
Get().MarkBackend(Backend::CUDA);
|
||||
}
|
||||
|
||||
// Activate all backends for Setup().
|
||||
Get().allowed_backends = Get().backends;
|
||||
// Perform setup.
|
||||
Get().Setup(dev);
|
||||
|
||||
// Enable only the default host CPU backend.
|
||||
Get().allowed_backends = Backend::CPU;
|
||||
// Enable the device
|
||||
Enable();
|
||||
|
||||
// Copy all data members from the global 'singleton_device' into '*this'.
|
||||
std::memcpy(this, &Get(), sizeof(Device));
|
||||
|
||||
// Only '*this' will call the MemoryManager::Destroy() method.
|
||||
destroy_mm = true;
|
||||
}
|
||||
|
||||
void Device::Print(std::ostream &out)
|
||||
@@ -84,7 +102,7 @@ void Device::Print(std::ostream &out)
|
||||
bool add_comma = false;
|
||||
for (int i = 0; i < Backend::NUM_BACKENDS; i++)
|
||||
{
|
||||
if (Get().backends & internal::backend_list[i])
|
||||
if (backends & internal::backend_list[i])
|
||||
{
|
||||
if (add_comma) { out << ','; }
|
||||
add_comma = true;
|
||||
@@ -94,12 +112,35 @@ void Device::Print(std::ostream &out)
|
||||
out << '\n';
|
||||
}
|
||||
|
||||
void Device::UpdateMemoryTypeAndClass()
|
||||
{
|
||||
if (Device::Allows(Backend::DEVICE_MASK))
|
||||
{
|
||||
mem_type = MemoryType::CUDA;
|
||||
mem_class = MemoryClass::CUDA;
|
||||
}
|
||||
else
|
||||
{
|
||||
mem_type = MemoryType::HOST;
|
||||
mem_class = MemoryClass::HOST;
|
||||
}
|
||||
}
|
||||
|
||||
void Device::Enable()
|
||||
{
|
||||
if (Get().backends & ~Backend::CPU)
|
||||
{
|
||||
Get().mode = Device::ACCELERATED;
|
||||
Get().UpdateMemoryTypeAndClass();
|
||||
}
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_CUDA
|
||||
static void DeviceSetup(const int dev, int &ngpu)
|
||||
{
|
||||
MFEM_CUDA_CHECK(cudaGetDeviceCount(&ngpu));
|
||||
ngpu = CuGetDeviceCount();
|
||||
MFEM_VERIFY(ngpu > 0, "No CUDA device found!");
|
||||
MFEM_CUDA_CHECK(cudaSetDevice(dev));
|
||||
MFEM_GPU_CHECK(cudaSetDevice(dev));
|
||||
}
|
||||
#endif
|
||||
|
||||
@@ -110,6 +151,18 @@ static void CudaDeviceSetup(const int dev, int &ngpu)
|
||||
#endif
|
||||
}
|
||||
|
||||
static void HipDeviceSetup(const int dev, int &ngpu)
|
||||
{
|
||||
#ifdef MFEM_USE_HIP
|
||||
int deviceId;
|
||||
MFEM_GPU_CHECK(hipGetDevice(&deviceId));
|
||||
hipDeviceProp_t props;
|
||||
MFEM_GPU_CHECK(hipGetDeviceProperties(&props, deviceId));
|
||||
MFEM_VERIFY(dev==deviceId,"");
|
||||
ngpu = 1;
|
||||
#endif
|
||||
}
|
||||
|
||||
static void RajaDeviceSetup(const int dev, int &ngpu)
|
||||
{
|
||||
#ifdef MFEM_USE_CUDA
|
||||
@@ -176,11 +229,14 @@ void Device::Setup(const int device)
|
||||
|
||||
ngpu = 0;
|
||||
dev = device;
|
||||
|
||||
#ifndef MFEM_USE_CUDA
|
||||
MFEM_VERIFY(!Allows(Backend::CUDA_MASK),
|
||||
"the CUDA backends require MFEM built with MFEM_USE_CUDA=YES");
|
||||
#endif
|
||||
#ifndef MFEM_USE_HIP
|
||||
MFEM_VERIFY(!Allows(Backend::HIP_MASK),
|
||||
"the HIP backends require MFEM built with MFEM_USE_HIP=YES");
|
||||
#endif
|
||||
#ifndef MFEM_USE_RAJA
|
||||
MFEM_VERIFY(!Allows(Backend::RAJA_MASK),
|
||||
"the RAJA backends require MFEM built with MFEM_USE_RAJA=YES");
|
||||
@@ -191,6 +247,7 @@ void Device::Setup(const int device)
|
||||
" MFEM_USE_OPENMP=YES");
|
||||
#endif
|
||||
if (Allows(Backend::CUDA)) { CudaDeviceSetup(dev, ngpu); }
|
||||
if (Allows(Backend::HIP)) { HipDeviceSetup(dev, ngpu); }
|
||||
if (Allows(Backend::RAJA_CUDA)) { RajaDeviceSetup(dev, ngpu); }
|
||||
// The check for MFEM_USE_OCCA is in the function OccaDeviceSetup().
|
||||
if (Allows(Backend::OCCA_MASK)) { OccaDeviceSetup(dev); }
|
||||
|
||||
+183
-61
@@ -12,7 +12,9 @@
|
||||
#ifndef MFEM_DEVICE_HPP
|
||||
#define MFEM_DEVICE_HPP
|
||||
|
||||
#include "cuda.hpp"
|
||||
#include "globals.hpp"
|
||||
#include "mem_manager.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -34,23 +36,25 @@ struct Backend
|
||||
OMP = 1 << 1,
|
||||
/// [device] CUDA backend. Enabled when MFEM_USE_CUDA = YES.
|
||||
CUDA = 1 << 2,
|
||||
/// [device] HIP backend. Enabled when MFEM_USE_HIP = YES.
|
||||
HIP = 1 << 3,
|
||||
/** @brief [host] RAJA CPU backend: sequential execution on each MPI rank.
|
||||
Enabled when MFEM_USE_RAJA = YES. */
|
||||
RAJA_CPU = 1 << 3,
|
||||
RAJA_CPU = 1 << 4,
|
||||
/** @brief [host] RAJA OpenMP backend. Enabled when MFEM_USE_RAJA = YES
|
||||
and MFEM_USE_OPENMP = YES. */
|
||||
RAJA_OMP = 1 << 4,
|
||||
RAJA_OMP = 1 << 5,
|
||||
/** @brief [device] RAJA CUDA backend. Enabled when MFEM_USE_RAJA = YES
|
||||
and MFEM_USE_CUDA = YES. */
|
||||
RAJA_CUDA = 1 << 5,
|
||||
RAJA_CUDA = 1 << 6,
|
||||
/** @brief [host] OCCA CPU backend: sequential execution on each MPI rank.
|
||||
Enabled when MFEM_USE_OCCA = YES. */
|
||||
OCCA_CPU = 1 << 6,
|
||||
OCCA_CPU = 1 << 7,
|
||||
/// [host] OCCA OpenMP backend. Enabled when MFEM_USE_OCCA = YES.
|
||||
OCCA_OMP = 1 << 7,
|
||||
OCCA_OMP = 1 << 8,
|
||||
/** @brief [device] OCCA CUDA backend. Enabled when MFEM_USE_OCCA = YES
|
||||
and MFEM_USE_CUDA = YES. */
|
||||
OCCA_CUDA = 1 << 8
|
||||
OCCA_CUDA = 1 << 9
|
||||
};
|
||||
|
||||
/** @brief Additional useful constants. For example, the *_MASK constants can
|
||||
@@ -58,26 +62,34 @@ struct Backend
|
||||
enum
|
||||
{
|
||||
/// Number of backends: from (1 << 0) to (1 << (NUM_BACKENDS-1)).
|
||||
NUM_BACKENDS = 9,
|
||||
NUM_BACKENDS = 10,
|
||||
|
||||
/// Biwise-OR of all CPU backends
|
||||
CPU_MASK = CPU | RAJA_CPU | OCCA_CPU,
|
||||
/// Biwise-OR of all CUDA backends
|
||||
CUDA_MASK = CUDA | RAJA_CUDA | OCCA_CUDA,
|
||||
/// Biwise-OR of all RAJA backends
|
||||
RAJA_MASK = RAJA_CPU | RAJA_OMP | RAJA_CUDA,
|
||||
/// Biwise-OR of all OCCA backends
|
||||
OCCA_MASK = OCCA_CPU | OCCA_OMP | OCCA_CUDA,
|
||||
/// Biwise-OR of all HIP backends
|
||||
HIP_MASK = HIP,
|
||||
/// Biwise-OR of all OpenMP backends
|
||||
OMP_MASK = OMP | RAJA_OMP | OCCA_OMP,
|
||||
/// Biwise-OR of all device backends
|
||||
DEVICE_MASK = CUDA_MASK
|
||||
DEVICE_MASK = CUDA_MASK | HIP_MASK,
|
||||
|
||||
/// Biwise-OR of all RAJA backends
|
||||
RAJA_MASK = RAJA_CPU | RAJA_OMP | RAJA_CUDA,
|
||||
/// Biwise-OR of all OCCA backends
|
||||
OCCA_MASK = OCCA_CPU | OCCA_OMP | OCCA_CUDA
|
||||
};
|
||||
};
|
||||
|
||||
|
||||
/** @brief The MFEM Device class abstracts hardware devices, such as GPUs, as
|
||||
well as programming models, such as CUDA, OCCA, RAJA and OpenMP. */
|
||||
/** @brief The MFEM Device class abstracts hardware devices such as GPUs, as
|
||||
well as programming models such as CUDA, OCCA, RAJA and OpenMP. */
|
||||
/** This class represents a "virtual device" with the following properties:
|
||||
- There a single object of this class which is controlled by its static
|
||||
methods.
|
||||
- At most one object of this class can be constructed and that object is
|
||||
controlled by its static methods.
|
||||
- If no Device object is constructed, the static methods will use a default
|
||||
global object which is never configured and always uses Backend::CPU.
|
||||
- Once configured, the object cannot be re-configured during the program
|
||||
lifetime.
|
||||
- MFEM classes use this object to determine where (host or device) to
|
||||
@@ -85,37 +97,81 @@ struct Backend
|
||||
- Multiple backends can be configured at the same time; currently, a fixed
|
||||
priority order is used to select a specific backend from the list of
|
||||
configured backends. See the Backend class and the Configure() method in
|
||||
this class for details.
|
||||
- The device can be disabled to restrict the backend selection to only the
|
||||
default host CPU backend, see the methods Enable() and Disable(). */
|
||||
this class for details. */
|
||||
class Device
|
||||
{
|
||||
private:
|
||||
enum MODES {SEQUENTIAL, ACCELERATED};
|
||||
|
||||
static Device device_singleton;
|
||||
|
||||
MODES mode;
|
||||
int dev = 0; ///< Device ID of the configured device.
|
||||
int ngpu = -1; ///< Number of detected devices; -1: not initialized.
|
||||
unsigned long backends; ///< Bitwise-OR of all configured backends.
|
||||
/** Bitwise-OR mask of all allowed backends. All backends are active when the
|
||||
Device is enabled. When the Device is disabled, only the host CPU backend
|
||||
is allowed. */
|
||||
unsigned long allowed_backends;
|
||||
/// Set to true during configuration, except in 'device_singleton'.
|
||||
bool destroy_mm;
|
||||
bool mpi_gpu_aware;
|
||||
|
||||
MemoryType mem_type; ///< Current Device MemoryType
|
||||
MemoryClass mem_class; ///< Current Device MemoryClass
|
||||
|
||||
Device()
|
||||
: mode(Device::SEQUENTIAL),
|
||||
backends(Backend::CPU),
|
||||
allowed_backends(backends) { }
|
||||
Device(Device const&);
|
||||
void operator=(Device const&);
|
||||
static Device& Get() { static Device singleton; return singleton; }
|
||||
static Device& Get() { return device_singleton; }
|
||||
|
||||
/// Setup switcher based on configuration settings
|
||||
void Setup(const int dev = 0);
|
||||
|
||||
void MarkBackend(Backend::Id b) { backends |= b; }
|
||||
|
||||
void UpdateMemoryTypeAndClass();
|
||||
|
||||
/// Enable the use of the configured device in the code that follows.
|
||||
/** After this call MFEM classes will use the backend kernels whenever
|
||||
possible, transferring data automatically to the device, if necessary.
|
||||
|
||||
If the only configured backend is the default host CPU one, the device
|
||||
will remain disabled.
|
||||
|
||||
If the device is actually enabled, this method will also update the
|
||||
current MemoryType and MemoryClass. */
|
||||
static void Enable();
|
||||
|
||||
public:
|
||||
/** @brief Default constructor. Unless Configure() is called later, the
|
||||
default Backend::CPU will be used. */
|
||||
/** @note At most one Device object can be constructed during the lifetime of
|
||||
a program.
|
||||
@note This object should be destroyed after all other MFEM objects that
|
||||
use the Device are destroyed. */
|
||||
Device()
|
||||
: mode(Device::SEQUENTIAL),
|
||||
backends(Backend::CPU),
|
||||
destroy_mm(false),
|
||||
mpi_gpu_aware(false),
|
||||
mem_type(MemoryType::HOST),
|
||||
mem_class(MemoryClass::HOST)
|
||||
{ }
|
||||
|
||||
/** @brief Construct a Device and configure it based on the @a device string.
|
||||
See Configure() for more details. */
|
||||
/** @note At most one Device object can be constructed during the lifetime of
|
||||
a program.
|
||||
@note This object should be destroyed after all other MFEM objects that
|
||||
use the Device are destroyed. */
|
||||
Device(const std::string &device, const int dev = 0)
|
||||
: mode(Device::SEQUENTIAL),
|
||||
backends(Backend::CPU),
|
||||
destroy_mm(false),
|
||||
mpi_gpu_aware(false),
|
||||
mem_type(MemoryType::HOST),
|
||||
mem_class(MemoryClass::HOST)
|
||||
{ Configure(device, dev); }
|
||||
|
||||
/// Destructor.
|
||||
~Device();
|
||||
|
||||
/// Configure the Device backends.
|
||||
/** The string parameter @a device must be a comma-separated list of backend
|
||||
string names (see below). The @a dev argument specifies the ID of the
|
||||
@@ -126,17 +182,16 @@ public:
|
||||
string name of 'RAJA_CPU' is 'raja-cpu'.
|
||||
* The 'cpu' backend is always enabled with lowest priority.
|
||||
* The current backend priority from highest to lowest is: 'occa-cuda',
|
||||
'raja-cuda', 'cuda', 'occa-omp', 'raja-omp', 'omp', 'occa-cpu',
|
||||
'raja-cuda', 'cuda', 'hip', 'occa-omp', 'raja-omp', 'omp', 'occa-cpu',
|
||||
'raja-cpu', 'cpu'.
|
||||
* Multiple backends can be configured at the same time.
|
||||
* Only one 'occa-*' backend can be configured at a time.
|
||||
* The backend 'occa-cuda' enables the 'cuda' backend unless 'raja-cuda'
|
||||
is already enabled.
|
||||
* After this call, the Device will be disabled. */
|
||||
static void Configure(const std::string &device, const int dev = 0);
|
||||
is already enabled. */
|
||||
void Configure(const std::string &device, const int dev = 0);
|
||||
|
||||
/// Print the configuration of the MFEM virtual device object.
|
||||
static void Print(std::ostream &out = mfem::out);
|
||||
void Print(std::ostream &out = mfem::out);
|
||||
|
||||
/// Return true if Configure() has been called previously.
|
||||
static inline bool IsConfigured() { return Get().ngpu >= 0; }
|
||||
@@ -144,45 +199,112 @@ public:
|
||||
/// Return true if an actual device (e.g. GPU) has been configured.
|
||||
static inline bool IsAvailable() { return Get().ngpu > 0; }
|
||||
|
||||
/// Enable the use of the configured device in the code that follows.
|
||||
/** After this call MFEM classes will use the backend kernels whenever
|
||||
possible, transferring data automatically to the device, if necessary.
|
||||
|
||||
If the only configured backend is the default host CPU one, the device
|
||||
will remain disabled. */
|
||||
static inline void Enable()
|
||||
{
|
||||
if (Get().backends & ~Backend::CPU)
|
||||
{
|
||||
Get().mode = Device::ACCELERATED;
|
||||
Get().allowed_backends = Get().backends;
|
||||
}
|
||||
}
|
||||
|
||||
/// Disable the use of the configured device in the code that follows.
|
||||
/** After this call MFEM classes will only use default CPU kernels,
|
||||
transferring data automatically from the device, if necessary. */
|
||||
static inline void Disable()
|
||||
{
|
||||
Get().mode = Device::SEQUENTIAL;
|
||||
Get().allowed_backends = Backend::CPU;
|
||||
}
|
||||
|
||||
/// Return true if the Device is enabled.
|
||||
/// Return true if any backend other than Backend::CPU is enabled.
|
||||
static inline bool IsEnabled() { return Get().mode == ACCELERATED; }
|
||||
|
||||
/// The opposite of IsEnabled().
|
||||
static inline bool IsDisabled() { return !IsEnabled(); }
|
||||
|
||||
/** @brief Return true if any of the backends in the backend mask, @a b_mask,
|
||||
are allowed. The allowed backends are all configured backends minus the
|
||||
device backends when the Device is disabled. */
|
||||
are allowed. */
|
||||
/** This method can be used with any of the Backend::Id constants, the
|
||||
Backend::*_MASK, or combinations of those. */
|
||||
static inline bool Allows(unsigned long b_mask)
|
||||
{ return Get().allowed_backends & b_mask; }
|
||||
{ return Get().backends & b_mask; }
|
||||
|
||||
/** @brief Get the current Device MemoryType. This is the MemoryType used by
|
||||
most MFEM classes when allocating memory to be used with device kernels.
|
||||
*/
|
||||
static inline MemoryType GetMemoryType() { return Get().mem_type; }
|
||||
|
||||
/** @brief Get the current Device MemoryClass. This is the MemoryClass used
|
||||
by most MFEM device kernels to access Memory objects. */
|
||||
static inline MemoryClass GetMemoryClass() { return Get().mem_class; }
|
||||
|
||||
static void SetGPUAwareMPI(const bool force = true)
|
||||
{ Get().mpi_gpu_aware = force; }
|
||||
|
||||
static bool GetGPUAwareMPI() { return Get().mpi_gpu_aware; }
|
||||
|
||||
static void Synchronize() { MFEM_DEVICE_SYNC; }
|
||||
};
|
||||
|
||||
|
||||
// Inline Memory access functions using the mfem::Device MemoryClass or
|
||||
// MemoryClass::HOST.
|
||||
|
||||
/** @brief Get a pointer for read access to @a mem with the mfem::Device
|
||||
MemoryClass, if @a on_dev = true, or MemoryClass::HOST, otherwise. */
|
||||
/** Also, if @a on_dev = true, the device flag of @a mem will be set. */
|
||||
template <typename T>
|
||||
inline const T *Read(const Memory<T> &mem, int size, bool on_dev = true)
|
||||
{
|
||||
if (!on_dev)
|
||||
{
|
||||
return mem.Read(MemoryClass::HOST, size);
|
||||
}
|
||||
else
|
||||
{
|
||||
mem.UseDevice(true);
|
||||
return mem.Read(Device::GetMemoryClass(), size);
|
||||
}
|
||||
}
|
||||
|
||||
/** @brief Shortcut to Read(const Memory<T> &mem, int size, false) */
|
||||
template <typename T>
|
||||
inline const T *HostRead(const Memory<T> &mem, int size)
|
||||
{
|
||||
return mfem::Read(mem, size, false);
|
||||
}
|
||||
|
||||
/** @brief Get a pointer for write access to @a mem with the mfem::Device
|
||||
MemoryClass, if @a on_dev = true, or MemoryClass::HOST, otherwise. */
|
||||
/** Also, if @a on_dev = true, the device flag of @a mem will be set. */
|
||||
template <typename T>
|
||||
inline T *Write(Memory<T> &mem, int size, bool on_dev = true)
|
||||
{
|
||||
if (!on_dev)
|
||||
{
|
||||
return mem.Write(MemoryClass::HOST, size);
|
||||
}
|
||||
else
|
||||
{
|
||||
mem.UseDevice(true);
|
||||
return mem.Write(Device::GetMemoryClass(), size);
|
||||
}
|
||||
}
|
||||
|
||||
/** @brief Shortcut to Write(const Memory<T> &mem, int size, false) */
|
||||
template <typename T>
|
||||
inline const T *HostWrite(const Memory<T> &mem, int size)
|
||||
{
|
||||
return mfem::Write(mem, size, false);
|
||||
}
|
||||
|
||||
/** @brief Get a pointer for read+write access to @a mem with the mfem::Device
|
||||
MemoryClass, if @a on_dev = true, or MemoryClass::HOST, otherwise. */
|
||||
/** Also, if @a on_dev = true, the device flag of @a mem will be set. */
|
||||
template <typename T>
|
||||
inline T *ReadWrite(Memory<T> &mem, int size, bool on_dev = true)
|
||||
{
|
||||
if (!on_dev)
|
||||
{
|
||||
return mem.ReadWrite(MemoryClass::HOST, size);
|
||||
}
|
||||
else
|
||||
{
|
||||
mem.UseDevice(true);
|
||||
return mem.ReadWrite(Device::GetMemoryClass(), size);
|
||||
}
|
||||
}
|
||||
|
||||
/** @brief Shortcut to ReadWrite(const Memory<T> &mem, int size, false) */
|
||||
template <typename T>
|
||||
inline const T *HostReadWrite(const Memory<T> &mem, int size)
|
||||
{
|
||||
return mfem::ReadWrite(mem, size, false);
|
||||
}
|
||||
|
||||
} // mfem
|
||||
|
||||
#endif // MFEM_DEVICE_HPP
|
||||
|
||||
+285
-36
@@ -15,6 +15,7 @@
|
||||
#include "../config/config.hpp"
|
||||
#include "error.hpp"
|
||||
#include "cuda.hpp"
|
||||
#include "hip.hpp"
|
||||
#include "occa.hpp"
|
||||
#include "device.hpp"
|
||||
#include "mem_manager.hpp"
|
||||
@@ -30,14 +31,40 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// Maximum size of dofs and quads in 1D.
|
||||
const int MAX_D1D = 16;
|
||||
const int MAX_Q1D = 16;
|
||||
|
||||
// Implementation of MFEM's "parallel for" (forall) device/host kernel
|
||||
// interfaces supporting RAJA, CUDA, OpenMP, and sequential backends.
|
||||
|
||||
// The MFEM_FORALL wrapper
|
||||
#define MFEM_FORALL(i,N,...) \
|
||||
ForallWrap(N, \
|
||||
[=] MFEM_ATTR_DEVICE (int i) {__VA_ARGS__}, \
|
||||
[&] (int i) {__VA_ARGS__})
|
||||
#define MFEM_FORALL(i,N,...) \
|
||||
ForallWrap<1>(true,N, \
|
||||
[=] MFEM_DEVICE (int i) {__VA_ARGS__}, \
|
||||
[&] (int i) {__VA_ARGS__})
|
||||
|
||||
// MFEM_FORALL with a 2D CUDA block
|
||||
#define MFEM_FORALL_2D(i,N,X,Y,BZ,...) \
|
||||
ForallWrap<2>(true,N, \
|
||||
[=] MFEM_DEVICE (int i) {__VA_ARGS__}, \
|
||||
[&] (int i) {__VA_ARGS__}, \
|
||||
X,Y,BZ)
|
||||
|
||||
// MFEM_FORALL with a 3D CUDA block
|
||||
#define MFEM_FORALL_3D(i,N,X,Y,Z,...) \
|
||||
ForallWrap<3>(true,N, \
|
||||
[=] MFEM_DEVICE (int i) {__VA_ARGS__}, \
|
||||
[&] (int i) {__VA_ARGS__}, \
|
||||
X,Y,Z)
|
||||
|
||||
// MFEM_FORALL that uses the basic CPU backend when use_dev is false. See for
|
||||
// example the functions in vector.cpp, where we don't want to use the mfem
|
||||
// device for operations on small vectors.
|
||||
#define MFEM_FORALL_SWITCH(use_dev,i,N,...) \
|
||||
ForallWrap<1>(use_dev,N, \
|
||||
[=] MFEM_DEVICE (int i) {__VA_ARGS__}, \
|
||||
[&] (int i) {__VA_ARGS__})
|
||||
|
||||
|
||||
/// OpenMP backend
|
||||
@@ -57,28 +84,100 @@ void OmpWrap(const int N, HBODY &&h_body)
|
||||
|
||||
|
||||
/// RAJA Cuda backend
|
||||
template <int BLOCKS, typename DBODY>
|
||||
void RajaCudaWrap(const int N, DBODY &&d_body)
|
||||
{
|
||||
#if defined(MFEM_USE_RAJA) && defined(RAJA_ENABLE_CUDA)
|
||||
|
||||
using RAJA::statement::Segs;
|
||||
|
||||
template <const int BLOCKS = MFEM_CUDA_BLOCKS, typename DBODY>
|
||||
void RajaCudaWrap1D(const int N, DBODY &&d_body)
|
||||
{
|
||||
RAJA::forall<RAJA::cuda_exec<BLOCKS>>(RAJA::RangeSegment(0,N),d_body);
|
||||
#else
|
||||
MFEM_ABORT("RAJA::Cuda requested but RAJA::Cuda is not enabled!");
|
||||
#endif
|
||||
}
|
||||
|
||||
template <typename DBODY>
|
||||
void RajaCudaWrap2D(const int N, DBODY &&d_body,
|
||||
const int X, const int Y, const int BZ)
|
||||
{
|
||||
MFEM_VERIFY(N>0, "");
|
||||
MFEM_VERIFY(BZ>0, "");
|
||||
const int G = (N+BZ-1)/BZ;
|
||||
RAJA::kernel<RAJA::KernelPolicy<
|
||||
RAJA::statement::CudaKernel<
|
||||
RAJA::statement::For<0, RAJA::cuda_block_x_loop,
|
||||
RAJA::statement::For<1, RAJA::cuda_thread_x_direct,
|
||||
RAJA::statement::For<2, RAJA::cuda_thread_y_direct,
|
||||
RAJA::statement::For<3, RAJA::cuda_thread_z_direct,
|
||||
RAJA::statement::Lambda<0, Segs<0>>>>>>>>>
|
||||
(RAJA::make_tuple(RAJA::RangeSegment(0,G), RAJA::RangeSegment(0,X),
|
||||
RAJA::RangeSegment(0,Y), RAJA::RangeSegment(0,BZ)),
|
||||
[=] RAJA_DEVICE (const int n)
|
||||
{
|
||||
const int k = n*BZ + threadIdx.z;
|
||||
if (k >= N) { return; }
|
||||
d_body(k);
|
||||
MFEM_SYNC_THREAD;
|
||||
});
|
||||
MFEM_GPU_CHECK(cudaGetLastError());
|
||||
}
|
||||
|
||||
template <typename DBODY>
|
||||
void RajaCudaWrap3D(const int N, DBODY &&d_body,
|
||||
const int X, const int Y, const int Z)
|
||||
{
|
||||
MFEM_VERIFY(N>0, "");
|
||||
RAJA::kernel<RAJA::KernelPolicy<
|
||||
RAJA::statement::CudaKernel<
|
||||
RAJA::statement::For<0, RAJA::cuda_block_x_loop,
|
||||
RAJA::statement::For<1, RAJA::cuda_thread_x_direct,
|
||||
RAJA::statement::For<2, RAJA::cuda_thread_y_direct,
|
||||
RAJA::statement::For<3, RAJA::cuda_thread_z_direct,
|
||||
RAJA::statement::Lambda<0, Segs<0>>>>>>>>>
|
||||
(RAJA::make_tuple(RAJA::RangeSegment(0,N), RAJA::RangeSegment(0,X),
|
||||
RAJA::RangeSegment(0,Y), RAJA::RangeSegment(0,Z)),
|
||||
[=] RAJA_DEVICE (const int k) { d_body(k); MFEM_SYNC_THREAD; });
|
||||
MFEM_GPU_CHECK(cudaGetLastError());
|
||||
}
|
||||
|
||||
#endif
|
||||
|
||||
|
||||
/// RAJA OpenMP backend
|
||||
template <typename HBODY>
|
||||
void RajaOmpWrap(const int N, HBODY &&h_body)
|
||||
{
|
||||
#if defined(MFEM_USE_RAJA) && defined(RAJA_ENABLE_OPENMP)
|
||||
|
||||
using RAJA::statement::Segs;
|
||||
|
||||
template <typename HBODY>
|
||||
void RajaOmpWrap1D(const int N, HBODY &&h_body)
|
||||
{
|
||||
RAJA::forall<RAJA::omp_parallel_for_exec>(RAJA::RangeSegment(0,N), h_body);
|
||||
#else
|
||||
MFEM_ABORT("RAJA::OpenMP requested but RAJA::OpenMP is not enabled!");
|
||||
#endif
|
||||
}
|
||||
|
||||
template <typename HBODY>
|
||||
void RajaOmpWrap2D(const int N, HBODY &&h_body,
|
||||
const int X, const int Y, const int BZ)
|
||||
{
|
||||
RAJA::kernel<RAJA::KernelPolicy<
|
||||
RAJA::statement::For<0, RAJA::omp_parallel_for_exec,
|
||||
RAJA::statement::Lambda<0, Segs<0>>>>>
|
||||
(RAJA::make_tuple(RAJA::RangeSegment(0,N), RAJA::RangeSegment(0,X),
|
||||
RAJA::RangeSegment(0,Y), RAJA::RangeSegment(0,BZ)),
|
||||
[=] (int k) { h_body(k); });
|
||||
}
|
||||
|
||||
template <typename HBODY>
|
||||
void RajaOmpWrap3D(const int N, HBODY &&h_body,
|
||||
const int X, const int Y, const int Z)
|
||||
{
|
||||
RAJA::kernel<RAJA::KernelPolicy<
|
||||
RAJA::statement::For<0, RAJA::omp_parallel_for_exec,
|
||||
RAJA::statement::Lambda<0, Segs<0>>>>>
|
||||
(RAJA::make_tuple(RAJA::RangeSegment(0,N), RAJA::RangeSegment(0,X),
|
||||
RAJA::RangeSegment(0,Y), RAJA::RangeSegment(0,Z)),
|
||||
[=] (int k) { h_body(k); });
|
||||
}
|
||||
|
||||
#endif
|
||||
|
||||
|
||||
/// RAJA sequential loop backend
|
||||
template <typename HBODY>
|
||||
@@ -96,46 +195,196 @@ void RajaSeqWrap(const int N, HBODY &&h_body)
|
||||
#ifdef MFEM_USE_CUDA
|
||||
|
||||
template <typename BODY> __global__ static
|
||||
void CuKernel(const int N, BODY body)
|
||||
void CuKernel1D(const int N, BODY body)
|
||||
{
|
||||
const int k = blockDim.x*blockIdx.x + threadIdx.x;
|
||||
if (k >= N) { return; }
|
||||
body(k);
|
||||
}
|
||||
|
||||
template <int BLOCKS, typename DBODY>
|
||||
void CuWrap(const int N, DBODY &&d_body)
|
||||
template <typename BODY> __global__ static
|
||||
void CuKernel2D(const int N, BODY body, const int BZ)
|
||||
{
|
||||
if (N==0) { return; }
|
||||
const int GRID = (N+BLOCKS-1)/BLOCKS;
|
||||
CuKernel<<<GRID,BLOCKS>>>(N,d_body);
|
||||
MFEM_CUDA_CHECK(cudaGetLastError());
|
||||
const int k = blockIdx.x*BZ + threadIdx.z;
|
||||
if (k >= N) { return; }
|
||||
body(k);
|
||||
}
|
||||
|
||||
#else // MFEM_USE_CUDA
|
||||
template <typename BODY> __global__ static
|
||||
void CuKernel3D(const int N, BODY body)
|
||||
{
|
||||
const int k = blockIdx.x;
|
||||
if (k >= N) { return; }
|
||||
body(k);
|
||||
}
|
||||
|
||||
template <int BLOCKS, typename DBODY>
|
||||
void CuWrap(const int N, DBODY &&d_body) {}
|
||||
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
|
||||
void CuWrap1D(const int N, DBODY &&d_body)
|
||||
{
|
||||
if (N==0) { return; }
|
||||
const int GRID = (N+BLCK-1)/BLCK;
|
||||
CuKernel1D<<<GRID,BLCK>>>(N, d_body);
|
||||
MFEM_GPU_CHECK(cudaGetLastError());
|
||||
}
|
||||
|
||||
#endif
|
||||
template <typename DBODY>
|
||||
void CuWrap2D(const int N, DBODY &&d_body,
|
||||
const int X, const int Y, const int BZ)
|
||||
{
|
||||
if (N==0) { return; }
|
||||
MFEM_VERIFY(BZ>0, "");
|
||||
const int GRID = (N+BZ-1)/BZ;
|
||||
const dim3 BLCK(X,Y,BZ);
|
||||
CuKernel2D<<<GRID,BLCK>>>(N,d_body,BZ);
|
||||
MFEM_GPU_CHECK(cudaGetLastError());
|
||||
}
|
||||
|
||||
template <typename DBODY>
|
||||
void CuWrap3D(const int N, DBODY &&d_body,
|
||||
const int X, const int Y, const int Z)
|
||||
{
|
||||
if (N==0) { return; }
|
||||
const int GRID = N;
|
||||
const dim3 BLCK(X,Y,Z);
|
||||
CuKernel3D<<<GRID,BLCK>>>(N,d_body);
|
||||
MFEM_GPU_CHECK(cudaGetLastError());
|
||||
}
|
||||
|
||||
#endif // MFEM_USE_CUDA
|
||||
|
||||
|
||||
/// HIP backend
|
||||
#ifdef MFEM_USE_HIP
|
||||
|
||||
template <typename BODY> __global__ static
|
||||
void HipKernel1D(const int N, BODY body)
|
||||
{
|
||||
const int k = hipBlockDim_x*hipBlockIdx_x + hipThreadIdx_x;
|
||||
if (k >= N) { return; }
|
||||
body(k);
|
||||
}
|
||||
|
||||
template <typename BODY> __global__ static
|
||||
void HipKernel2D(const int N, BODY body, const int BZ)
|
||||
{
|
||||
const int k = hipBlockIdx_x*BZ + hipThreadIdx_z;
|
||||
if (k >= N) { return; }
|
||||
body(k);
|
||||
}
|
||||
|
||||
template <typename BODY> __global__ static
|
||||
void HipKernel3D(const int N, BODY body)
|
||||
{
|
||||
const int k = hipBlockIdx_x;
|
||||
if (k >= N) { return; }
|
||||
body(k);
|
||||
}
|
||||
|
||||
template <const int BLCK = MFEM_HIP_BLOCKS, typename DBODY>
|
||||
void HipWrap1D(const int N, DBODY &&d_body)
|
||||
{
|
||||
if (N==0) { return; }
|
||||
const int GRID = (N+BLCK-1)/BLCK;
|
||||
hipLaunchKernelGGL(HipKernel1D,GRID,BLCK,0,0,N,d_body);
|
||||
MFEM_GPU_CHECK(hipGetLastError());
|
||||
}
|
||||
|
||||
template <typename DBODY>
|
||||
void HipWrap2D(const int N, DBODY &&d_body,
|
||||
const int X, const int Y, const int BZ)
|
||||
{
|
||||
if (N==0) { return; }
|
||||
const int GRID = (N+BZ-1)/BZ;
|
||||
const dim3 BLCK(X,Y,BZ);
|
||||
hipLaunchKernelGGL(HipKernel2D,GRID,BLCK,0,0,N,d_body,BZ);
|
||||
MFEM_GPU_CHECK(hipGetLastError());
|
||||
}
|
||||
|
||||
template <typename DBODY>
|
||||
void HipWrap3D(const int N, DBODY &&d_body,
|
||||
const int X, const int Y, const int Z)
|
||||
{
|
||||
if (N==0) { return; }
|
||||
const int GRID = N;
|
||||
const dim3 BLCK(X,Y,Z);
|
||||
hipLaunchKernelGGL(HipKernel3D,GRID,BLCK,0,0,N,d_body);
|
||||
MFEM_GPU_CHECK(hipGetLastError());
|
||||
}
|
||||
|
||||
#endif // MFEM_USE_HIP
|
||||
|
||||
|
||||
/// The forall kernel body wrapper
|
||||
template <typename DBODY, typename HBODY>
|
||||
void ForallWrap(const int N, DBODY &&d_body, HBODY &&h_body)
|
||||
template <const int DIM, typename DBODY, typename HBODY>
|
||||
inline void ForallWrap(const bool use_dev, const int N,
|
||||
DBODY &&d_body, HBODY &&h_body,
|
||||
const int X=0, const int Y=0, const int Z=0)
|
||||
{
|
||||
if (Device::Allows(Backend::RAJA_CUDA))
|
||||
{ return RajaCudaWrap<MFEM_CUDA_BLOCKS>(N, d_body); }
|
||||
if (!use_dev) { goto backend_cpu; }
|
||||
|
||||
if (Device::Allows(Backend::CUDA))
|
||||
{ return CuWrap<MFEM_CUDA_BLOCKS>(N, d_body); }
|
||||
#if defined(MFEM_USE_RAJA) && defined(RAJA_ENABLE_CUDA)
|
||||
// Handle all allowed CUDA backends except Backend::CUDA
|
||||
if (DIM == 1 && Device::Allows(Backend::CUDA_MASK & ~Backend::CUDA))
|
||||
{ return RajaCudaWrap1D(N, d_body); }
|
||||
|
||||
if (Device::Allows(Backend::RAJA_OMP)) { return RajaOmpWrap(N, h_body); }
|
||||
if (DIM == 2 && Device::Allows(Backend::CUDA_MASK & ~Backend::CUDA))
|
||||
{ return RajaCudaWrap2D(N, d_body, X, Y, Z); }
|
||||
|
||||
if (Device::Allows(Backend::OMP)) { return OmpWrap(N, h_body); }
|
||||
if (DIM == 3 && Device::Allows(Backend::CUDA_MASK & ~Backend::CUDA))
|
||||
{ return RajaCudaWrap3D(N, d_body, X, Y, Z); }
|
||||
#endif
|
||||
|
||||
if (Device::Allows(Backend::RAJA_CPU)) { return RajaSeqWrap(N, h_body); }
|
||||
#ifdef MFEM_USE_CUDA
|
||||
// Handle all allowed CUDA backends
|
||||
if (DIM == 1 && Device::Allows(Backend::CUDA_MASK))
|
||||
{ return CuWrap1D(N, d_body); }
|
||||
|
||||
if (DIM == 2 && Device::Allows(Backend::CUDA_MASK))
|
||||
{ return CuWrap2D(N, d_body, X, Y, Z); }
|
||||
|
||||
if (DIM == 3 && Device::Allows(Backend::CUDA_MASK))
|
||||
{ return CuWrap3D(N, d_body, X, Y, Z); }
|
||||
#endif
|
||||
|
||||
#ifdef MFEM_USE_HIP
|
||||
// Handle all allowed HIP backends
|
||||
if (DIM == 1 && Device::Allows(Backend::HIP_MASK))
|
||||
{ return HipWrap1D(N, d_body); }
|
||||
|
||||
if (DIM == 2 && Device::Allows(Backend::HIP_MASK))
|
||||
{ return HipWrap2D(N, d_body, X, Y, Z); }
|
||||
|
||||
if (DIM == 3 && Device::Allows(Backend::HIP_MASK))
|
||||
{ return HipWrap3D(N, d_body, X, Y, Z); }
|
||||
#endif
|
||||
|
||||
#if defined(MFEM_USE_RAJA) && defined(RAJA_ENABLE_OPENMP)
|
||||
// Handle all allowed OpenMP backends except Backend::OMP
|
||||
if (DIM == 1 && Device::Allows(Backend::OMP_MASK & ~Backend::OMP))
|
||||
{ return RajaOmpWrap1D(N, h_body); }
|
||||
|
||||
if (DIM == 2 && Device::Allows(Backend::OMP_MASK & ~Backend::OMP))
|
||||
{ return RajaOmpWrap2D(N, h_body, X, Y, Z); }
|
||||
|
||||
if (DIM == 3 && Device::Allows(Backend::OMP_MASK & ~Backend::OMP))
|
||||
{ return RajaOmpWrap3D(N, h_body, X, Y, Z); }
|
||||
#endif
|
||||
|
||||
#ifdef MFEM_USE_OPENMP
|
||||
// Handle all allowed OpenMP backends
|
||||
if (Device::Allows(Backend::OMP_MASK)) { return OmpWrap(N, h_body); }
|
||||
#endif
|
||||
|
||||
#ifdef MFEM_USE_RAJA
|
||||
// Handle all allowed CPU backends except Backend::CPU
|
||||
if (Device::Allows(Backend::CPU_MASK & ~Backend::CPU))
|
||||
{ return RajaSeqWrap(N, h_body); }
|
||||
#endif
|
||||
|
||||
backend_cpu:
|
||||
// Handle Backend::CPU. This is also a fallback for any allowed backends not
|
||||
// handled above, e.g. OCCA_CPU with configuration 'occa-cpu,cpu', or
|
||||
// OCCA_OMP with configuration 'occa-omp,cpu'.
|
||||
for (int k = 0; k < N; k++) { h_body(k); }
|
||||
}
|
||||
|
||||
|
||||
@@ -31,6 +31,12 @@ std::string MakeParFilename(const std::string &prefix, const int myid,
|
||||
return fname.str();
|
||||
}
|
||||
|
||||
#ifdef MFEM_COUNT_FLOPS
|
||||
namespace internal
|
||||
{
|
||||
long long flop_count;
|
||||
}
|
||||
#endif
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
|
||||
|
||||
+133
@@ -0,0 +1,133 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "hip.hpp"
|
||||
#include "globals.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// Internal debug option, useful for tracking HIP allocations, deallocations
|
||||
// and transfers.
|
||||
// #define MFEM_TRACK_HIP_MEM
|
||||
|
||||
#ifdef MFEM_USE_HIP
|
||||
void mfem_hip_error(hipError_t err, const char *expr, const char *func,
|
||||
const char *file, int line)
|
||||
{
|
||||
mfem::err << "\n\nHIP error: (" << expr << ") failed with error:\n --> "
|
||||
<< hipGetErrorString(err)
|
||||
<< "\n ... in function: " << func
|
||||
<< "\n ... in file: " << file << ':' << line << '\n';
|
||||
mfem_error();
|
||||
}
|
||||
#endif
|
||||
|
||||
void* HipMemAlloc(void** dptr, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_HIP
|
||||
#ifdef MFEM_TRACK_HIP_MEM
|
||||
mfem::out << "HipMemAlloc(): allocating " << bytes << " bytes ... "
|
||||
<< std::flush;
|
||||
#endif
|
||||
MFEM_GPU_CHECK(hipMalloc(dptr, bytes));
|
||||
#ifdef MFEM_TRACK_HIP_MEM
|
||||
mfem::out << "done: " << *dptr << std::endl;
|
||||
#endif
|
||||
#endif
|
||||
return *dptr;
|
||||
}
|
||||
|
||||
void* HipMemFree(void *dptr)
|
||||
{
|
||||
#ifdef MFEM_USE_HIP
|
||||
#ifdef MFEM_TRACK_HIP_MEM
|
||||
mfem::out << "HipMemFree(): deallocating memory @ " << dptr << " ... "
|
||||
<< std::flush;
|
||||
#endif
|
||||
MFEM_GPU_CHECK(hipFree(dptr));
|
||||
#ifdef MFEM_TRACK_HIP_MEM
|
||||
mfem::out << "done." << std::endl;
|
||||
#endif
|
||||
#endif
|
||||
return dptr;
|
||||
}
|
||||
|
||||
void* HipMemcpyHtoD(void* dst, const void* src, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_HIP
|
||||
#ifdef MFEM_TRACK_HIP_MEM
|
||||
mfem::out << "HipMemcpyHtoD(): copying " << bytes << " bytes from "
|
||||
<< src << " to " << dst << " ... " << std::flush;
|
||||
#endif
|
||||
MFEM_GPU_CHECK(hipMemcpy(dst, src, bytes, hipMemcpyHostToDevice));
|
||||
#ifdef MFEM_TRACK_HIP_MEM
|
||||
mfem::out << "done." << std::endl;
|
||||
#endif
|
||||
#endif
|
||||
return dst;
|
||||
}
|
||||
|
||||
void* HipMemcpyHtoDAsync(void* dst, const void* src, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_HIP
|
||||
MFEM_GPU_CHECK(hipMemcpyAsync(dst, src, bytes, hipMemcpyHostToDevice));
|
||||
#endif
|
||||
return dst;
|
||||
}
|
||||
|
||||
void* HipMemcpyDtoD(void *dst, const void *src, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_HIP
|
||||
#ifdef MFEM_TRACK_HIP_MEM
|
||||
mfem::out << "HipMemcpyDtoD(): copying " << bytes << " bytes from "
|
||||
<< src << " to " << dst << " ... " << std::flush;
|
||||
#endif
|
||||
MFEM_GPU_CHECK(hipMemcpy(dst, src, bytes, hipMemcpyDeviceToDevice));
|
||||
#ifdef MFEM_TRACK_HIP_MEM
|
||||
mfem::out << "done." << std::endl;
|
||||
#endif
|
||||
#endif
|
||||
return dst;
|
||||
}
|
||||
|
||||
void* HipMemcpyDtoDAsync(void* dst, const void *src, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_HIP
|
||||
MFEM_GPU_CHECK(hipMemcpyAsync(dst, src, bytes, hipMemcpyDeviceToDevice));
|
||||
#endif
|
||||
return dst;
|
||||
}
|
||||
|
||||
void* HipMemcpyDtoH(void *dst, const void *src, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_HIP
|
||||
#ifdef MFEM_TRACK_HPI_MEM
|
||||
mfem::out << "HipMemcpyDtoH(): copying " << bytes << " bytes from "
|
||||
<< src << " to " << dst << " ... " << std::flush;
|
||||
#endif
|
||||
MFEM_GPU_CHECK(hipMemcpy(dst, src, bytes, hipMemcpyDeviceToHost));
|
||||
#ifdef MFEM_TRACK_HIP_MEM
|
||||
mfem::out << "done." << std::endl;
|
||||
#endif
|
||||
#endif
|
||||
return dst;
|
||||
}
|
||||
|
||||
void* HipMemcpyDtoHAsync(void *dst, const void *src, size_t bytes)
|
||||
{
|
||||
#ifdef MFEM_USE_HIP
|
||||
MFEM_GPU_CHECK(hipMemcpyAsync(dst, src, bytes, hipMemcpyDeviceToHost));
|
||||
#endif
|
||||
return dst;
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
@@ -0,0 +1,85 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_HIP_HPP
|
||||
#define MFEM_HIP_HPP
|
||||
|
||||
#include "../config/config.hpp"
|
||||
#include "error.hpp"
|
||||
|
||||
#ifdef MFEM_USE_HIP
|
||||
#include <hip/hip_runtime.h>
|
||||
#endif
|
||||
|
||||
// HIP block size used by MFEM.
|
||||
#define MFEM_HIP_BLOCKS 256
|
||||
|
||||
#ifdef MFEM_USE_HIP
|
||||
// Define a HIP error check macro, MFEM_GPU_CHECK(x), where x returns/is of
|
||||
// type 'hipError_t'. This macro evaluates 'x' and raises an error if the
|
||||
// result is not hipSuccess.
|
||||
#define MFEM_GPU_CHECK(x) \
|
||||
do \
|
||||
{ \
|
||||
hipError_t err = (x); \
|
||||
if (err != hipSuccess) \
|
||||
{ \
|
||||
mfem_hip_error(err, #x, _MFEM_FUNC_NAME, __FILE__, __LINE__); \
|
||||
} \
|
||||
} \
|
||||
while (0)
|
||||
#endif // MFEM_USE_HIP
|
||||
|
||||
// Define the MFEM inner threading macros
|
||||
#if defined(MFEM_USE_HIP) && defined(__ROCM_ARCH__)
|
||||
#define MFEM_SHARED __shared__
|
||||
#define MFEM_SYNC_THREAD __syncthreads()
|
||||
#define MFEM_THREAD_ID(k) hipThreadIdx_ ##k
|
||||
#define MFEM_THREAD_SIZE(k) hipBlockDim_ ##k
|
||||
#define MFEM_FOREACH_THREAD(i,k,N) for(int i=hipThreadIdx_ ##k; i<N; i+=hipBlockDim_ ##k)
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
#ifdef MFEM_USE_HIP
|
||||
// Function used by the macro MFEM_GPU_CHECK.
|
||||
void mfem_hip_error(hipError_t err, const char *expr, const char *func,
|
||||
const char *file, int line);
|
||||
#endif
|
||||
|
||||
/// Allocates device memory
|
||||
void* HipMemAlloc(void **d_ptr, size_t bytes);
|
||||
|
||||
/// Frees device memory
|
||||
void* HipMemFree(void *d_ptr);
|
||||
|
||||
/// Copies memory from Host to Device
|
||||
void* HipMemcpyHtoD(void *d_dst, const void *h_src, size_t bytes);
|
||||
|
||||
/// Copies memory from Host to Device
|
||||
void* HipMemcpyHtoDAsync(void *d_dst, const void *h_src, size_t bytes);
|
||||
|
||||
/// Copies memory from Device to Device
|
||||
void* HipMemcpyDtoD(void *d_dst, const void *d_src, size_t bytes);
|
||||
|
||||
/// Copies memory from Device to Device
|
||||
void* HipMemcpyDtoDAsync(void *d_dst, const void *d_src, size_t bytes);
|
||||
|
||||
/// Copies memory from Device to Host
|
||||
void* HipMemcpyDtoH(void *h_dst, const void *d_src, size_t bytes);
|
||||
|
||||
/// Copies memory from Device to Host
|
||||
void* HipMemcpyDtoHAsync(void *h_dst, const void *d_src, size_t bytes);
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_HIP_HPP
|
||||
+563
-208
@@ -15,10 +15,48 @@
|
||||
|
||||
#include <list>
|
||||
#include <unordered_map>
|
||||
#include <algorithm> // std::max
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
#ifdef MFEM_USE_HIP
|
||||
#define MFEM_GPU(...) Hip ## __VA_ARGS__
|
||||
#else
|
||||
#define MFEM_GPU(...) Cu ## __VA_ARGS__
|
||||
#endif
|
||||
|
||||
MemoryType GetMemoryType(MemoryClass mc)
|
||||
{
|
||||
switch (mc)
|
||||
{
|
||||
case MemoryClass::HOST: return MemoryType::HOST;
|
||||
case MemoryClass::HOST_32: return MemoryType::HOST_32;
|
||||
case MemoryClass::HOST_64: return MemoryType::HOST_64;
|
||||
case MemoryClass::CUDA: return MemoryType::CUDA;
|
||||
case MemoryClass::CUDA_UVM: return MemoryType::CUDA_UVM;
|
||||
}
|
||||
return MemoryType::HOST;
|
||||
}
|
||||
|
||||
MemoryClass operator*(MemoryClass mc1, MemoryClass mc2)
|
||||
{
|
||||
// | HOST HOST_32 HOST_64 CUDA CUDA_UVM
|
||||
// ---------+--------------------------------------------------
|
||||
// HOST | HOST HOST_32 HOST_64 CUDA CUDA_UVM
|
||||
// HOST_32 | HOST_32 HOST_32 HOST_64 CUDA CUDA_UVM
|
||||
// HOST_64 | HOST_64 HOST_64 HOST_64 CUDA CUDA_UVM
|
||||
// CUDA | CUDA CUDA CUDA CUDA CUDA_UVM
|
||||
// CUDA_UVM | CUDA_UVM CUDA_UVM CUDA_UVM CUDA_UVM CUDA_UVM
|
||||
|
||||
// Using the enumeration ordering:
|
||||
// HOST < HOST_32 < HOST_64 < CUDA < CUDA_UVM,
|
||||
// the above table is simply: a*b = max(a,b).
|
||||
|
||||
return std::max(mc1, mc2);
|
||||
}
|
||||
|
||||
|
||||
namespace internal
|
||||
{
|
||||
|
||||
@@ -28,17 +66,15 @@ struct Alias;
|
||||
/// Memory class that holds:
|
||||
/// - a boolean telling which memory space is being used
|
||||
/// - the size in bytes of this memory region,
|
||||
/// - the host and the device pointer,
|
||||
/// - a list of all aliases seen using this region (used only to free them).
|
||||
/// - the host and the device pointer.
|
||||
struct Memory
|
||||
{
|
||||
bool host;
|
||||
const std::size_t bytes;
|
||||
void *const h_ptr;
|
||||
void *d_ptr;
|
||||
std::list<const void*> aliases;
|
||||
Memory(void* const h, const std::size_t size):
|
||||
host(true), bytes(size), h_ptr(h), d_ptr(nullptr), aliases() {}
|
||||
host(true), bytes(size), h_ptr(h), d_ptr(nullptr) {}
|
||||
};
|
||||
|
||||
/// Alias class that holds the base memory region and the offset
|
||||
@@ -46,10 +82,13 @@ struct Alias
|
||||
{
|
||||
Memory *const mem;
|
||||
const long offset;
|
||||
unsigned long counter;
|
||||
};
|
||||
|
||||
typedef std::unordered_map<const void*, Memory> MemoryMap;
|
||||
typedef std::unordered_map<const void*, const Alias*> AliasMap;
|
||||
// TODO: use 'Alias' or 'const Alias' as the mapped type in the AliasMap instead
|
||||
// of 'Alias*'
|
||||
typedef std::unordered_map<const void*, Alias*> AliasMap;
|
||||
|
||||
struct Ledger
|
||||
{
|
||||
@@ -64,269 +103,213 @@ static internal::Ledger *maps;
|
||||
MemoryManager::MemoryManager()
|
||||
{
|
||||
exists = true;
|
||||
enabled = true;
|
||||
maps = new internal::Ledger();
|
||||
}
|
||||
|
||||
MemoryManager::~MemoryManager()
|
||||
{
|
||||
if (exists) { Destroy(); }
|
||||
}
|
||||
|
||||
void MemoryManager::Destroy()
|
||||
{
|
||||
MFEM_VERIFY(exists, "MemoryManager has been destroyed already!");
|
||||
for (auto& n : maps->memories)
|
||||
{
|
||||
internal::Memory &mem = n.second;
|
||||
if (mem.d_ptr) { MFEM_GPU(MemFree)(mem.d_ptr); }
|
||||
}
|
||||
for (auto& n : maps->aliases)
|
||||
{
|
||||
delete n.second;
|
||||
}
|
||||
delete maps;
|
||||
exists = false;
|
||||
}
|
||||
|
||||
void* MemoryManager::Insert(void *ptr, const std::size_t bytes)
|
||||
{
|
||||
if (!UsingMM()) { return ptr; }
|
||||
const bool known = IsKnown(ptr);
|
||||
if (known)
|
||||
if (ptr == NULL)
|
||||
{
|
||||
MFEM_VERIFY(bytes == 0, "Trying to add NULL with size " << bytes);
|
||||
return NULL;
|
||||
}
|
||||
auto res = maps->memories.emplace(ptr, internal::Memory(ptr, bytes));
|
||||
if (res.second == false)
|
||||
{
|
||||
mfem_error("Trying to add an already present address!");
|
||||
}
|
||||
maps->memories.emplace(ptr, internal::Memory(ptr, bytes));
|
||||
return ptr;
|
||||
}
|
||||
|
||||
void *MemoryManager::Erase(void *ptr)
|
||||
void MemoryManager::InsertDevice(void *ptr, void *h_ptr, size_t bytes)
|
||||
{
|
||||
MFEM_VERIFY(ptr != NULL, "cannot register NULL device pointer");
|
||||
MFEM_VERIFY(h_ptr != NULL, "internal error");
|
||||
auto res = maps->memories.emplace(h_ptr, internal::Memory(h_ptr, bytes));
|
||||
if (res.second == false)
|
||||
{
|
||||
mfem_error("Trying to add an already present address!");
|
||||
}
|
||||
res.first->second.d_ptr = ptr;
|
||||
}
|
||||
|
||||
void *MemoryManager::Erase(void *ptr, bool free_dev_ptr)
|
||||
{
|
||||
if (!UsingMM()) { return ptr; }
|
||||
if (!ptr) { return ptr; }
|
||||
const bool known = IsKnown(ptr);
|
||||
if (!known)
|
||||
auto mem_map_iter = maps->memories.find(ptr);
|
||||
if (mem_map_iter == maps->memories.end())
|
||||
{
|
||||
mfem_error("Trying to erase an unknown pointer!");
|
||||
}
|
||||
internal::Memory &mem = maps->memories.at(ptr);
|
||||
if (mem.d_ptr) { CuMemFree(mem.d_ptr); }
|
||||
for (const void *alias : mem.aliases)
|
||||
{
|
||||
maps->aliases.erase(maps->aliases.find(alias));
|
||||
}
|
||||
mem.aliases.clear();
|
||||
maps->memories.erase(maps->memories.find(ptr));
|
||||
internal::Memory &mem = mem_map_iter->second;
|
||||
if (mem.d_ptr && free_dev_ptr) { MFEM_GPU(MemFree)(mem.d_ptr); }
|
||||
maps->memories.erase(mem_map_iter);
|
||||
return ptr;
|
||||
}
|
||||
|
||||
void MemoryManager::SetHostDevicePtr(void *h_ptr, void *d_ptr, const bool host)
|
||||
{
|
||||
internal::Memory &base = maps->memories.at(h_ptr);
|
||||
base.d_ptr = d_ptr;
|
||||
base.host = host;
|
||||
}
|
||||
|
||||
bool MemoryManager::IsKnown(const void *ptr)
|
||||
{
|
||||
return maps->memories.find(ptr) != maps->memories.end();
|
||||
}
|
||||
|
||||
bool MemoryManager::IsOnHost(const void *ptr)
|
||||
{
|
||||
return maps->memories.at(ptr).host;
|
||||
}
|
||||
|
||||
std::size_t MemoryManager::Bytes(const void *ptr)
|
||||
{
|
||||
return maps->memories.at(ptr).bytes;
|
||||
}
|
||||
|
||||
void *MemoryManager::GetDevicePtr(const void *ptr)
|
||||
void *MemoryManager::GetDevicePtr(const void *ptr, size_t bytes, bool copy_data)
|
||||
{
|
||||
if (!ptr)
|
||||
{
|
||||
MFEM_VERIFY(bytes == 0, "Trying to access NULL with size " << bytes);
|
||||
return NULL;
|
||||
}
|
||||
internal::Memory &base = maps->memories.at(ptr);
|
||||
const size_t bytes = base.bytes;
|
||||
if (!base.d_ptr)
|
||||
{
|
||||
CuMemAlloc(&base.d_ptr, bytes);
|
||||
CuMemcpyHtoD(base.d_ptr, ptr, bytes);
|
||||
MFEM_GPU(MemAlloc)(&base.d_ptr, base.bytes);
|
||||
}
|
||||
if (copy_data)
|
||||
{
|
||||
MFEM_ASSERT(bytes <= base.bytes, "invalid copy size");
|
||||
MFEM_GPU(MemcpyHtoD)(base.d_ptr, ptr, bytes);
|
||||
base.host = false;
|
||||
}
|
||||
return base.d_ptr;
|
||||
}
|
||||
|
||||
// Looks if ptr is an alias of one memory
|
||||
static const void* AliasBaseMemory(const internal::Ledger *maps,
|
||||
const void *ptr)
|
||||
void MemoryManager::InsertAlias(const void *base_ptr, void *alias_ptr,
|
||||
bool base_is_alias)
|
||||
{
|
||||
for (internal::MemoryMap::const_iterator mem = maps->memories.begin();
|
||||
mem != maps->memories.end(); mem++)
|
||||
long offset = static_cast<const char*>(alias_ptr) -
|
||||
static_cast<const char*>(base_ptr);
|
||||
if (!base_ptr)
|
||||
{
|
||||
const void *b_ptr = mem->first;
|
||||
if (b_ptr > ptr) { continue; }
|
||||
const void *end = static_cast<const char*>(b_ptr) + mem->second.bytes;
|
||||
if (ptr < end) { return b_ptr; }
|
||||
MFEM_VERIFY(offset == 0,
|
||||
"Trying to add alias to NULL at offset " << offset);
|
||||
return;
|
||||
}
|
||||
if (base_is_alias)
|
||||
{
|
||||
const internal::Alias *alias = maps->aliases.at(base_ptr);
|
||||
base_ptr = alias->mem->h_ptr;
|
||||
offset += alias->offset;
|
||||
}
|
||||
internal::Memory &mem = maps->memories.at(base_ptr);
|
||||
auto res = maps->aliases.emplace(alias_ptr, nullptr);
|
||||
if (res.second == false) // alias_ptr was already in the map
|
||||
{
|
||||
if (res.first->second->mem != &mem || res.first->second->offset != offset)
|
||||
{
|
||||
mfem_error("alias already exists with different base/offset!");
|
||||
}
|
||||
else
|
||||
{
|
||||
res.first->second->counter++;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
res.first->second = new internal::Alias{&mem, offset, 1};
|
||||
}
|
||||
return nullptr;
|
||||
}
|
||||
|
||||
bool MemoryManager::IsAlias(const void *ptr)
|
||||
void MemoryManager::EraseAlias(void *alias_ptr)
|
||||
{
|
||||
const internal::AliasMap::const_iterator found = maps->aliases.find(ptr);
|
||||
if (found != maps->aliases.end()) { return true; }
|
||||
MFEM_ASSERT(!IsKnown(ptr), "Ptr is an already known address!");
|
||||
const void *base = AliasBaseMemory(maps, ptr);
|
||||
if (!base) { return false; }
|
||||
internal::Memory &mem = maps->memories.at(base);
|
||||
const long offset = static_cast<const char*>(ptr) -
|
||||
static_cast<const char*> (base);
|
||||
const internal::Alias *alias = new internal::Alias{&mem, offset};
|
||||
maps->aliases.emplace(ptr, alias);
|
||||
mem.aliases.push_back(ptr);
|
||||
return true;
|
||||
if (!alias_ptr) { return; }
|
||||
auto alias_map_iter = maps->aliases.find(alias_ptr);
|
||||
if (alias_map_iter == maps->aliases.end())
|
||||
{
|
||||
mfem_error("alias not found");
|
||||
}
|
||||
internal::Alias *alias = alias_map_iter->second;
|
||||
if (--alias->counter) { return; }
|
||||
// erase the alias from the alias map:
|
||||
maps->aliases.erase(alias_map_iter);
|
||||
delete alias;
|
||||
}
|
||||
|
||||
static inline bool MmDeviceIniFilter(void)
|
||||
void *MemoryManager::GetAliasDevicePtr(const void *alias_ptr, size_t bytes,
|
||||
bool copy_data)
|
||||
{
|
||||
if (!mm.UsingMM()) { return true; }
|
||||
if (!mm.IsEnabled()) { return true; }
|
||||
if (!Device::IsAvailable()) { return true; }
|
||||
if (!Device::IsConfigured()) { return true; }
|
||||
return false;
|
||||
if (!alias_ptr)
|
||||
{
|
||||
MFEM_VERIFY(bytes == 0, "Trying to access NULL with size " << bytes);
|
||||
return NULL;
|
||||
}
|
||||
auto &alias_map = maps->aliases;
|
||||
auto alias_map_iter = alias_map.find(alias_ptr);
|
||||
if (alias_map_iter == alias_map.end())
|
||||
{
|
||||
mfem_error("alias not found");
|
||||
}
|
||||
const internal::Alias *alias = alias_map_iter->second;
|
||||
internal::Memory &base = *alias->mem;
|
||||
MFEM_ASSERT((char*)base.h_ptr + alias->offset == alias_ptr,
|
||||
"internal error");
|
||||
if (!base.d_ptr)
|
||||
{
|
||||
MFEM_GPU(MemAlloc)(&base.d_ptr, base.bytes);
|
||||
}
|
||||
if (copy_data)
|
||||
{
|
||||
MFEM_GPU(MemcpyHtoD)((char*)base.d_ptr + alias->offset, alias_ptr, bytes);
|
||||
base.host = false;
|
||||
}
|
||||
return (char*)base.d_ptr + alias->offset;
|
||||
}
|
||||
|
||||
// Turn a known address into the right host or device address. Alloc, Push, or
|
||||
// Pull it if necessary.
|
||||
static void *PtrKnown(internal::Ledger *maps, void *ptr)
|
||||
static void PullKnown(internal::Ledger *maps,
|
||||
const void *ptr, const std::size_t bytes, bool copy_data)
|
||||
{
|
||||
internal::Memory &base = maps->memories.at(ptr);
|
||||
const bool ptr_on_host = base.host;
|
||||
const std::size_t bytes = base.bytes;
|
||||
const bool run_on_device = Device::Allows(Backend::DEVICE_MASK);
|
||||
if (ptr_on_host && !run_on_device) { return ptr; }
|
||||
if (bytes==0) { mfem_error("PtrKnown bytes==0"); }
|
||||
if (!base.d_ptr) { CuMemAlloc(&base.d_ptr, bytes); }
|
||||
if (!base.d_ptr) { mfem_error("PtrKnown !base->d_ptr"); }
|
||||
if (!ptr_on_host && run_on_device) { return base.d_ptr; }
|
||||
if (!ptr) { mfem_error("PtrKnown !ptr"); }
|
||||
if (!ptr_on_host && !run_on_device) // Pull
|
||||
MFEM_ASSERT(base.h_ptr == ptr, "internal error");
|
||||
// There are cases where it is OK if base.d_ptr is not allocated yet:
|
||||
// for example, when requesting read-write access on host to memory created
|
||||
// as device memory.
|
||||
if (copy_data && base.d_ptr)
|
||||
{
|
||||
CuMemcpyDtoH(ptr, base.d_ptr, bytes);
|
||||
MFEM_GPU(MemcpyDtoH)(base.h_ptr, base.d_ptr, bytes);
|
||||
base.host = true;
|
||||
return ptr;
|
||||
}
|
||||
// Push
|
||||
if (!(ptr_on_host && run_on_device)) { mfem_error("PtrKnown !(host && gpu)"); }
|
||||
CuMemcpyHtoD(base.d_ptr, ptr, bytes);
|
||||
base.host = false;
|
||||
return base.d_ptr;
|
||||
}
|
||||
|
||||
// Turn an alias into the right host or device address. Alloc, Push, or Pull it
|
||||
// if necessary.
|
||||
static void *PtrAlias(internal::Ledger *maps, void *ptr)
|
||||
{
|
||||
const bool gpu = Device::Allows(Backend::DEVICE_MASK);
|
||||
const internal::Alias *alias = maps->aliases.at(ptr);
|
||||
const internal::Memory *base = alias->mem;
|
||||
const bool host = base->host;
|
||||
const bool device = !base->host;
|
||||
const std::size_t bytes = base->bytes;
|
||||
if (host && !gpu) { return ptr; }
|
||||
if (bytes==0) { mfem_error("PtrAlias bytes==0"); }
|
||||
if (!base->d_ptr) { CuMemAlloc(&(alias->mem->d_ptr), bytes); }
|
||||
if (!base->d_ptr) { mfem_error("PtrAlias !base->d_ptr"); }
|
||||
void *a_ptr = static_cast<char*>(base->d_ptr) + alias->offset;
|
||||
if (device && gpu) { return a_ptr; }
|
||||
if (!base->h_ptr) { mfem_error("PtrAlias !base->h_ptr"); }
|
||||
if (device && !gpu) // Pull
|
||||
{
|
||||
CuMemcpyDtoH(base->h_ptr, base->d_ptr, bytes);
|
||||
alias->mem->host = true;
|
||||
return ptr;
|
||||
}
|
||||
// Push
|
||||
if (!(host && gpu)) { mfem_error("PtrAlias !(host && gpu)"); }
|
||||
CuMemcpyHtoD(base->d_ptr, base->h_ptr, bytes);
|
||||
alias->mem->host = false;
|
||||
return a_ptr;
|
||||
}
|
||||
|
||||
void *MemoryManager::Ptr(void *ptr)
|
||||
{
|
||||
if (ptr==NULL) { return NULL; };
|
||||
if (MmDeviceIniFilter()) { return ptr; }
|
||||
if (IsKnown(ptr)) { return PtrKnown(maps, ptr); }
|
||||
if (IsAlias(ptr)) { return PtrAlias(maps, ptr); }
|
||||
if (Device::Allows(Backend::DEVICE_MASK))
|
||||
{
|
||||
mfem_error("Trying to use unknown pointer on the DEVICE!");
|
||||
}
|
||||
return ptr;
|
||||
}
|
||||
|
||||
const void *MemoryManager::Ptr(const void *ptr)
|
||||
{
|
||||
return static_cast<const void*>(Ptr(const_cast<void*>(ptr)));
|
||||
}
|
||||
|
||||
static void PushKnown(internal::Ledger *maps,
|
||||
const void *ptr, const std::size_t bytes)
|
||||
{
|
||||
internal::Memory &base = maps->memories.at(ptr);
|
||||
if (!base.d_ptr) { CuMemAlloc(&base.d_ptr, base.bytes); }
|
||||
CuMemcpyHtoD(base.d_ptr, ptr, bytes == 0 ? base.bytes : bytes);
|
||||
}
|
||||
|
||||
static void PushAlias(const internal::Ledger *maps,
|
||||
const void *ptr, const std::size_t bytes)
|
||||
{
|
||||
const internal::Alias *alias = maps->aliases.at(ptr);
|
||||
void *dst = static_cast<char*>(alias->mem->d_ptr) + alias->offset;
|
||||
CuMemcpyHtoD(dst, ptr, bytes);
|
||||
}
|
||||
|
||||
void MemoryManager::Push(const void *ptr, const std::size_t bytes)
|
||||
{
|
||||
if (MmDeviceIniFilter()) { return; }
|
||||
if (IsKnown(ptr)) { return PushKnown(maps, ptr, bytes); }
|
||||
if (IsAlias(ptr)) { return PushAlias(maps, ptr, bytes); }
|
||||
if (Device::Allows(Backend::DEVICE_MASK))
|
||||
{ mfem_error("Unknown pointer to push to!"); }
|
||||
}
|
||||
|
||||
static void PullKnown(const internal::Ledger *maps,
|
||||
const void *ptr, const std::size_t bytes)
|
||||
{
|
||||
const internal::Memory &base = maps->memories.at(ptr);
|
||||
const bool host = base.host;
|
||||
if (host) { return; }
|
||||
CuMemcpyDtoH(base.h_ptr, base.d_ptr, bytes == 0 ? base.bytes : bytes);
|
||||
}
|
||||
|
||||
static void PullAlias(const internal::Ledger *maps,
|
||||
const void *ptr, const std::size_t bytes)
|
||||
const void *ptr, const std::size_t bytes, bool copy_data)
|
||||
{
|
||||
const internal::Alias *alias = maps->aliases.at(ptr);
|
||||
const bool host = alias->mem->host;
|
||||
if (host) { return; }
|
||||
if (!ptr) { mfem_error("PullAlias !ptr"); }
|
||||
if (!alias->mem->d_ptr) { mfem_error("PullAlias !alias->mem->d_ptr"); }
|
||||
CuMemcpyDtoH(const_cast<void*>(ptr),
|
||||
static_cast<char*>(alias->mem->d_ptr) + alias->offset,
|
||||
bytes);
|
||||
}
|
||||
|
||||
void MemoryManager::Pull(const void *ptr, const std::size_t bytes)
|
||||
{
|
||||
if (MmDeviceIniFilter()) { return; }
|
||||
if (IsKnown(ptr)) { return PullKnown(maps, ptr, bytes); }
|
||||
if (IsAlias(ptr)) { return PullAlias(maps, ptr, bytes); }
|
||||
if (Device::Allows(Backend::DEVICE_MASK))
|
||||
{ mfem_error("Unknown pointer to pull from!"); }
|
||||
}
|
||||
|
||||
void* MemoryManager::Memcpy(void *dst, const void *src,
|
||||
const std::size_t bytes, const bool async)
|
||||
{
|
||||
void *d_dst = Ptr(dst);
|
||||
void *d_src = const_cast<void*>(Ptr(src));
|
||||
if (bytes == 0) { return dst; }
|
||||
const bool run_on_host = !Device::Allows(Backend::DEVICE_MASK);
|
||||
if (run_on_host) { return std::memcpy(dst, src, bytes); }
|
||||
if (!async) { return CuMemcpyDtoD(d_dst, d_src, bytes); }
|
||||
return CuMemcpyDtoDAsync(d_dst, d_src, bytes);
|
||||
MFEM_ASSERT((char*)alias->mem->h_ptr + alias->offset == ptr,
|
||||
"internal error");
|
||||
// There are cases where it is OK if alias->mem->d_ptr is not allocated yet:
|
||||
// for example, when requesting read-write access on host to memory created
|
||||
// as device memory.
|
||||
if (copy_data && alias->mem->d_ptr)
|
||||
{
|
||||
MFEM_GPU(MemcpyDtoH)(const_cast<void*>(ptr),
|
||||
static_cast<char*>(alias->mem->d_ptr) + alias->offset,
|
||||
bytes);
|
||||
}
|
||||
}
|
||||
|
||||
void MemoryManager::RegisterCheck(void *ptr)
|
||||
{
|
||||
if (ptr != NULL && UsingMM())
|
||||
if (ptr != NULL)
|
||||
{
|
||||
if (!IsKnown(ptr))
|
||||
{
|
||||
@@ -346,17 +329,389 @@ void MemoryManager::PrintPtrs(void)
|
||||
<< "h_ptr " << mem.h_ptr << ", "
|
||||
<< "d_ptr " << mem.d_ptr;
|
||||
}
|
||||
mfem::out << std::endl;
|
||||
}
|
||||
|
||||
void MemoryManager::GetAll(void)
|
||||
// Static private MemoryManager methods used by class Memory
|
||||
|
||||
void *MemoryManager::New_(void *h_ptr, std::size_t size, MemoryType mt,
|
||||
unsigned &flags)
|
||||
{
|
||||
for (const auto& n : maps->memories)
|
||||
// TODO: save the types of the pointers ...
|
||||
flags = Mem::REGISTERED | Mem::OWNS_INTERNAL;
|
||||
switch (mt)
|
||||
{
|
||||
const void *ptr = n.first;
|
||||
Ptr(ptr);
|
||||
case MemoryType::HOST: return nullptr; // case is handled outside
|
||||
|
||||
case MemoryType::HOST_32:
|
||||
case MemoryType::HOST_64:
|
||||
mfem_error("New_(): aligned host types are not implemented yet");
|
||||
return nullptr;
|
||||
|
||||
case MemoryType::CUDA:
|
||||
mm.Insert(h_ptr, size);
|
||||
flags = flags | Mem::OWNS_HOST | Mem::OWNS_DEVICE | Mem::VALID_DEVICE;
|
||||
return h_ptr;
|
||||
|
||||
case MemoryType::CUDA_UVM:
|
||||
mfem_error("New_(): CUDA UVM allocation is not implemented yet");
|
||||
return nullptr;
|
||||
}
|
||||
return nullptr;
|
||||
}
|
||||
|
||||
void *MemoryManager::Register_(void *ptr, void *h_ptr, std::size_t capacity,
|
||||
MemoryType mt, bool own, bool alias,
|
||||
unsigned &flags)
|
||||
{
|
||||
// TODO: save the type of the registered pointer ...
|
||||
MFEM_VERIFY(alias == false, "cannot register an alias!");
|
||||
flags = flags | (Mem::REGISTERED | Mem::OWNS_INTERNAL);
|
||||
if (IsHostMemory(mt))
|
||||
{
|
||||
mm.Insert(ptr, capacity);
|
||||
flags = (own ? flags | Mem::OWNS_HOST : flags & ~Mem::OWNS_HOST) |
|
||||
Mem::OWNS_DEVICE | Mem::VALID_HOST;
|
||||
return ptr;
|
||||
}
|
||||
MFEM_VERIFY(mt == MemoryType::CUDA, "Only CUDA pointers are supported");
|
||||
mm.InsertDevice(ptr, h_ptr, capacity);
|
||||
flags = (own ? flags | Mem::OWNS_DEVICE : flags & ~Mem::OWNS_DEVICE) |
|
||||
Mem::OWNS_HOST | Mem::VALID_DEVICE;
|
||||
return h_ptr;
|
||||
}
|
||||
|
||||
void MemoryManager::Alias_(void *base_h_ptr, std::size_t offset,
|
||||
std::size_t size, unsigned base_flags,
|
||||
unsigned &flags)
|
||||
{
|
||||
// TODO: store the 'size' in the MemoryManager?
|
||||
mm.InsertAlias(base_h_ptr, (char*)base_h_ptr + offset,
|
||||
base_flags & Mem::ALIAS);
|
||||
flags = (base_flags | Mem::ALIAS | Mem::OWNS_INTERNAL) &
|
||||
~(Mem::OWNS_HOST | Mem::OWNS_DEVICE);
|
||||
}
|
||||
|
||||
MemoryType MemoryManager::Delete_(void *h_ptr, unsigned flags)
|
||||
{
|
||||
// TODO: this logic needs to be updated when support for HOST_32 and HOST_64
|
||||
// memory types is added.
|
||||
|
||||
MFEM_ASSERT(!(flags & Mem::OWNS_DEVICE) || (flags & Mem::OWNS_INTERNAL),
|
||||
"invalid Memory state");
|
||||
if (mm.exists && (flags & Mem::OWNS_INTERNAL))
|
||||
{
|
||||
if (flags & Mem::ALIAS)
|
||||
{
|
||||
mm.EraseAlias(h_ptr);
|
||||
}
|
||||
else
|
||||
{
|
||||
mm.Erase(h_ptr, flags & Mem::OWNS_DEVICE);
|
||||
}
|
||||
}
|
||||
return MemoryType::HOST;
|
||||
}
|
||||
|
||||
void *MemoryManager::ReadWrite_(void *h_ptr, MemoryClass mc,
|
||||
std::size_t size, unsigned &flags)
|
||||
{
|
||||
switch (mc)
|
||||
{
|
||||
case MemoryClass::HOST:
|
||||
if (!(flags & Mem::VALID_HOST))
|
||||
{
|
||||
if (flags & Mem::ALIAS) { PullAlias(maps, h_ptr, size, true); }
|
||||
else { PullKnown(maps, h_ptr, size, true); }
|
||||
}
|
||||
flags = (flags | Mem::VALID_HOST) & ~Mem::VALID_DEVICE;
|
||||
return h_ptr;
|
||||
|
||||
case MemoryClass::HOST_32:
|
||||
// TODO: check that the host pointer is MemoryType::HOST_32 or
|
||||
// MemoryType::HOST_64
|
||||
return h_ptr;
|
||||
|
||||
case MemoryClass::HOST_64:
|
||||
// TODO: check that the host pointer is MemoryType::HOST_64
|
||||
return h_ptr;
|
||||
|
||||
case MemoryClass::CUDA:
|
||||
{
|
||||
// TODO: check that the device pointer is MemoryType::CUDA or
|
||||
// MemoryType::CUDA_UVM
|
||||
|
||||
const bool need_copy = !(flags & Mem::VALID_DEVICE);
|
||||
flags = (flags | Mem::VALID_DEVICE) & ~Mem::VALID_HOST;
|
||||
|
||||
// TODO: add support for UVM
|
||||
if (flags & Mem::ALIAS)
|
||||
{
|
||||
return mm.GetAliasDevicePtr(h_ptr, size, need_copy);
|
||||
}
|
||||
return mm.GetDevicePtr(h_ptr, size, need_copy);
|
||||
}
|
||||
|
||||
case MemoryClass::CUDA_UVM:
|
||||
// TODO: check that the host+device pointers are MemoryType::CUDA_UVM
|
||||
|
||||
// Do we need to update the validity flags?
|
||||
|
||||
return h_ptr; // the host and device pointers are the same
|
||||
}
|
||||
return nullptr;
|
||||
}
|
||||
|
||||
const void *MemoryManager::Read_(void *h_ptr, MemoryClass mc,
|
||||
std::size_t size, unsigned &flags)
|
||||
{
|
||||
switch (mc)
|
||||
{
|
||||
case MemoryClass::HOST:
|
||||
if (!(flags & Mem::VALID_HOST))
|
||||
{
|
||||
if (flags & Mem::ALIAS) { PullAlias(maps, h_ptr, size, true); }
|
||||
else { PullKnown(maps, h_ptr, size, true); }
|
||||
}
|
||||
flags = flags | Mem::VALID_HOST;
|
||||
return h_ptr;
|
||||
|
||||
case MemoryClass::HOST_32:
|
||||
// TODO: check that the host pointer is MemoryType::HOST_32 or
|
||||
// MemoryType::HOST_64
|
||||
return h_ptr;
|
||||
|
||||
case MemoryClass::HOST_64:
|
||||
// TODO: check that the host pointer is MemoryType::HOST_64
|
||||
return h_ptr;
|
||||
|
||||
case MemoryClass::CUDA:
|
||||
{
|
||||
// TODO: check that the device pointer is MemoryType::CUDA or
|
||||
// MemoryType::CUDA_UVM
|
||||
|
||||
const bool need_copy = !(flags & Mem::VALID_DEVICE);
|
||||
flags = flags | Mem::VALID_DEVICE;
|
||||
|
||||
// TODO: add support for UVM
|
||||
if (flags & Mem::ALIAS)
|
||||
{
|
||||
return mm.GetAliasDevicePtr(h_ptr, size, need_copy);
|
||||
}
|
||||
return mm.GetDevicePtr(h_ptr, size, need_copy);
|
||||
}
|
||||
|
||||
case MemoryClass::CUDA_UVM:
|
||||
// TODO: check that the host+device pointers are MemoryType::CUDA_UVM
|
||||
|
||||
// Do we need to update the validity flags?
|
||||
|
||||
return h_ptr; // the host and device pointers are the same
|
||||
}
|
||||
return nullptr;
|
||||
}
|
||||
|
||||
void *MemoryManager::Write_(void *h_ptr, MemoryClass mc, std::size_t size,
|
||||
unsigned &flags)
|
||||
{
|
||||
switch (mc)
|
||||
{
|
||||
case MemoryClass::HOST:
|
||||
flags = (flags | Mem::VALID_HOST) & ~Mem::VALID_DEVICE;
|
||||
return h_ptr;
|
||||
|
||||
case MemoryClass::HOST_32:
|
||||
// TODO: check that the host pointer is MemoryType::HOST_32 or
|
||||
// MemoryType::HOST_64
|
||||
|
||||
flags = (flags | Mem::VALID_HOST) & ~Mem::VALID_DEVICE;
|
||||
return h_ptr;
|
||||
|
||||
case MemoryClass::HOST_64:
|
||||
// TODO: check that the host pointer is MemoryType::HOST_64
|
||||
|
||||
flags = (flags | Mem::VALID_HOST) & ~Mem::VALID_DEVICE;
|
||||
return h_ptr;
|
||||
|
||||
case MemoryClass::CUDA:
|
||||
// TODO: check that the device pointer is MemoryType::CUDA or
|
||||
// MemoryType::CUDA_UVM
|
||||
|
||||
flags = (flags | Mem::VALID_DEVICE) & ~Mem::VALID_HOST;
|
||||
|
||||
// TODO: add support for UVM
|
||||
if (flags & Mem::ALIAS)
|
||||
{
|
||||
return mm.GetAliasDevicePtr(h_ptr, size, false);
|
||||
}
|
||||
return mm.GetDevicePtr(h_ptr, size, false);
|
||||
|
||||
case MemoryClass::CUDA_UVM:
|
||||
// TODO: check that the host+device pointers are MemoryType::CUDA_UVM
|
||||
|
||||
// Do we need to update the validity flags?
|
||||
|
||||
return h_ptr; // the host and device pointers are the same
|
||||
}
|
||||
return nullptr;
|
||||
}
|
||||
|
||||
void MemoryManager::SyncAlias_(const void *base_h_ptr, void *alias_h_ptr,
|
||||
size_t alias_size, unsigned base_flags,
|
||||
unsigned &alias_flags)
|
||||
{
|
||||
// This is called only when (base_flags & Mem::REGISTERED) is true.
|
||||
// Note that (alias_flags & REGISTERED) may not be true.
|
||||
MFEM_ASSERT(alias_flags & Mem::ALIAS, "not an alias");
|
||||
if ((base_flags & Mem::VALID_HOST) && !(alias_flags & Mem::VALID_HOST))
|
||||
{
|
||||
PullAlias(maps, alias_h_ptr, alias_size, true);
|
||||
}
|
||||
if ((base_flags & Mem::VALID_DEVICE) && !(alias_flags & Mem::VALID_DEVICE))
|
||||
{
|
||||
if (!(alias_flags & Mem::REGISTERED))
|
||||
{
|
||||
mm.InsertAlias(base_h_ptr, alias_h_ptr, base_flags & Mem::ALIAS);
|
||||
alias_flags = (alias_flags | Mem::REGISTERED | Mem::OWNS_INTERNAL) &
|
||||
~(Mem::OWNS_HOST | Mem::OWNS_DEVICE);
|
||||
}
|
||||
mm.GetAliasDevicePtr(alias_h_ptr, alias_size, true);
|
||||
}
|
||||
alias_flags = (alias_flags & ~(Mem::VALID_HOST | Mem::VALID_DEVICE)) |
|
||||
(base_flags & (Mem::VALID_HOST | Mem::VALID_DEVICE));
|
||||
}
|
||||
|
||||
MemoryType MemoryManager::GetMemoryType_(void *h_ptr, unsigned flags)
|
||||
{
|
||||
// TODO: support other memory types
|
||||
if (flags & Mem::VALID_DEVICE) { return MemoryType::CUDA; }
|
||||
return MemoryType::HOST;
|
||||
}
|
||||
|
||||
void MemoryManager::Copy_(void *dest_h_ptr, const void *src_h_ptr,
|
||||
std::size_t size, unsigned src_flags,
|
||||
unsigned &dest_flags)
|
||||
{
|
||||
// Type of copy to use based on the src and dest validity flags:
|
||||
// | src
|
||||
// | h | d | hd
|
||||
// -----------+-----+-----+------
|
||||
// h | h2h d2h h2h
|
||||
// dest d | h2d d2d d2d
|
||||
// hd | h2h d2d d2d
|
||||
|
||||
const bool src_on_host =
|
||||
(src_flags & Mem::VALID_HOST) &&
|
||||
(!(src_flags & Mem::VALID_DEVICE) ||
|
||||
((dest_flags & Mem::VALID_HOST) && !(dest_flags & Mem::VALID_DEVICE)));
|
||||
const bool dest_on_host =
|
||||
(dest_flags & Mem::VALID_HOST) &&
|
||||
(!(dest_flags & Mem::VALID_DEVICE) ||
|
||||
((src_flags & Mem::VALID_HOST) && !(src_flags & Mem::VALID_DEVICE)));
|
||||
const void *src_d_ptr = src_on_host ? NULL :
|
||||
((src_flags & Mem::ALIAS) ?
|
||||
mm.GetAliasDevicePtr(src_h_ptr, size, false) :
|
||||
mm.GetDevicePtr(src_h_ptr, size, false));
|
||||
if (dest_on_host)
|
||||
{
|
||||
if (src_on_host)
|
||||
{
|
||||
if (dest_h_ptr != src_h_ptr && size != 0)
|
||||
{
|
||||
MFEM_ASSERT((char*)dest_h_ptr + size <= src_h_ptr ||
|
||||
(char*)src_h_ptr + size <= dest_h_ptr,
|
||||
"data overlaps!");
|
||||
std::memcpy(dest_h_ptr, src_h_ptr, size);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_GPU(MemcpyDtoH)(dest_h_ptr, src_d_ptr, size);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
void *dest_d_ptr = (dest_flags & Mem::ALIAS) ?
|
||||
mm.GetAliasDevicePtr(dest_h_ptr, size, false) :
|
||||
mm.GetDevicePtr(dest_h_ptr, size, false);
|
||||
if (src_on_host)
|
||||
{
|
||||
MFEM_GPU(MemcpyHtoD)(dest_d_ptr, src_h_ptr, size);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_GPU(MemcpyDtoD)(dest_d_ptr, src_d_ptr, size);
|
||||
}
|
||||
}
|
||||
dest_flags = dest_flags &
|
||||
~(dest_on_host ? Mem::VALID_DEVICE : Mem::VALID_HOST);
|
||||
}
|
||||
|
||||
void MemoryManager::CopyToHost_(void *dest_h_ptr, const void *src_h_ptr,
|
||||
std::size_t size, unsigned src_flags)
|
||||
{
|
||||
const bool src_on_host = src_flags & Mem::VALID_HOST;
|
||||
if (src_on_host)
|
||||
{
|
||||
if (dest_h_ptr != src_h_ptr && size != 0)
|
||||
{
|
||||
MFEM_ASSERT((char*)dest_h_ptr + size <= src_h_ptr ||
|
||||
(char*)src_h_ptr + size <= dest_h_ptr,
|
||||
"data overlaps!");
|
||||
std::memcpy(dest_h_ptr, src_h_ptr, size);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
const void *src_d_ptr = (src_flags & Mem::ALIAS) ?
|
||||
mm.GetAliasDevicePtr(src_h_ptr, size, false) :
|
||||
mm.GetDevicePtr(src_h_ptr, size, false);
|
||||
MFEM_GPU(MemcpyDtoH)(dest_h_ptr, src_d_ptr, size);
|
||||
}
|
||||
}
|
||||
|
||||
void MemoryManager::CopyFromHost_(void *dest_h_ptr, const void *src_h_ptr,
|
||||
std::size_t size, unsigned &dest_flags)
|
||||
{
|
||||
const bool dest_on_host = dest_flags & Mem::VALID_HOST;
|
||||
if (dest_on_host)
|
||||
{
|
||||
if (dest_h_ptr != src_h_ptr && size != 0)
|
||||
{
|
||||
MFEM_ASSERT((char*)dest_h_ptr + size <= src_h_ptr ||
|
||||
(char*)src_h_ptr + size <= dest_h_ptr,
|
||||
"data overlaps!");
|
||||
std::memcpy(dest_h_ptr, src_h_ptr, size);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
void *dest_d_ptr = (dest_flags & Mem::ALIAS) ?
|
||||
mm.GetAliasDevicePtr(dest_h_ptr, size, false) :
|
||||
mm.GetDevicePtr(dest_h_ptr, size, false);
|
||||
MFEM_GPU(MemcpyHtoD)(dest_d_ptr, src_h_ptr, size);
|
||||
}
|
||||
dest_flags = dest_flags &
|
||||
~(dest_on_host ? Mem::VALID_DEVICE : Mem::VALID_HOST);
|
||||
}
|
||||
|
||||
|
||||
void MemoryPrintFlags(unsigned flags)
|
||||
{
|
||||
typedef Memory<int> Mem;
|
||||
mfem::out
|
||||
<< " registered = " << bool(flags & Mem::REGISTERED)
|
||||
<< "\n owns host = " << bool(flags & Mem::OWNS_HOST)
|
||||
<< "\n owns device = " << bool(flags & Mem::OWNS_DEVICE)
|
||||
<< "\n owns internal = " << bool(flags & Mem::OWNS_INTERNAL)
|
||||
<< "\n valid host = " << bool(flags & Mem::VALID_HOST)
|
||||
<< "\n valid device = " << bool(flags & Mem::VALID_DEVICE)
|
||||
<< "\n alias = " << bool(flags & Mem::ALIAS)
|
||||
<< "\n device flag = " << bool(flags & Mem::USE_DEVICE)
|
||||
<< std::endl;
|
||||
}
|
||||
|
||||
|
||||
MemoryManager mm;
|
||||
bool MemoryManager::exists = false;
|
||||
|
||||
|
||||
+688
-135
@@ -13,6 +13,9 @@
|
||||
#define MFEM_MEM_MANAGER_HPP
|
||||
|
||||
#include "globals.hpp"
|
||||
#include "error.hpp"
|
||||
#include <cstring> // std::memcpy
|
||||
#include <type_traits> // std::is_const
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
@@ -20,167 +23,717 @@ namespace mfem
|
||||
// Implementation of MFEM's lightweight device/host memory manager designed to
|
||||
// work seamlessly with the OCCA, RAJA, and other kernels supported by MFEM.
|
||||
|
||||
/// Memory types supported by MFEM.
|
||||
enum class MemoryType
|
||||
{
|
||||
HOST, ///< Host memory; using new[] and delete[]
|
||||
HOST_32, ///< Host memory aligned at 32 bytes (not supported yet)
|
||||
HOST_64, ///< Host memory aligned at 64 bytes (not supported yet)
|
||||
CUDA, ///< cudaMalloc, cudaFree
|
||||
CUDA_UVM ///< cudaMallocManaged, cudaFree (not supported yet)
|
||||
};
|
||||
|
||||
/// Memory classes identify subsets of memory types.
|
||||
/** This type is used by kernels that can work with multiple MemoryType%s. For
|
||||
example, kernels that can use CUDA or CUDA_UVM memory types should use
|
||||
MemoryClass::CUDA for their inputs. */
|
||||
enum class MemoryClass
|
||||
{
|
||||
HOST, ///< Memory types: { HOST, HOST_32, HOST_64, CUDA_UVM }
|
||||
HOST_32, ///< Memory types: { HOST_32, HOST_64 }
|
||||
HOST_64, ///< Memory types: { HOST_64 }
|
||||
CUDA, ///< Memory types: { CUDA, CUDA_UVM }
|
||||
CUDA_UVM ///< Memory types: { CUDA_UVM }
|
||||
};
|
||||
|
||||
/// Return true if the given memory type is in MemoryClass::HOST.
|
||||
inline bool IsHostMemory(MemoryType mt) { return mt <= MemoryType::HOST_64; }
|
||||
|
||||
/// Return a suitable MemoryType for a given MemoryClass.
|
||||
MemoryType GetMemoryType(MemoryClass mc);
|
||||
|
||||
/// Return a suitable MemoryClass from a pair of MemoryClass%es.
|
||||
/** Note: this operation is commutative, i.e. a*b = b*a, associative, i.e.
|
||||
(a*b)*c = a*(b*c), and has an identity element: MemoryClass::HOST.
|
||||
|
||||
Currently, the operation is defined as a*b := max(a,b) where the max
|
||||
operation is based on the enumeration ordering:
|
||||
|
||||
HOST < HOST_32 < HOST_64 < CUDA < CUDA_UVM. */
|
||||
MemoryClass operator*(MemoryClass mc1, MemoryClass mc2);
|
||||
|
||||
/// Class used by MFEM to store pointers to host and/or device memory.
|
||||
/** The template class parameter, T, must be a plain-old-data (POD) type.
|
||||
|
||||
In many respects this class behaves like a pointer:
|
||||
* When destroyed, a Memory object does NOT automatically delete any
|
||||
allocated memory.
|
||||
* Only the method Delete() will deallocate a Memory object.
|
||||
* Other methods that modify the object (e.g. New(), Wrap(), etc) will simply
|
||||
overwrite the old contents.
|
||||
* One difference with a pointer is that a const Memory object does not allow
|
||||
modification of the content (unlike e.g. a const pointer).
|
||||
|
||||
A Memory object stores up to two different pointers: one host pointer (with
|
||||
MemoryType from MemoryClass::HOST) and one device pointer (currently one of
|
||||
MemoryType::CUDA or MemoryTyep::CUDA_UVM).
|
||||
|
||||
A Memory object can hold (wrap) an externally allocated pointer with any
|
||||
given MemoryType.
|
||||
|
||||
Access to the content of the Memory object can be requested with any given
|
||||
MemoryClass through the methods ReadWrite(), Read(), and Write().
|
||||
Requesting such access may result in additional (internally handled)
|
||||
memory allocation and/or memory copy.
|
||||
* When ReadWrite() is called, the returned pointer becomes the only
|
||||
valid pointer.
|
||||
* When Read() is called, the returned pointer becomes valid, however
|
||||
the other pointer (host or device) may remain valid as well.
|
||||
* When Write() is called, the returned pointer becomes the only valid
|
||||
pointer, however, unlike ReadWrite(), no memory copy will be performed.
|
||||
|
||||
The host memory (pointer from MemoryClass::HOST) can be accessed through the
|
||||
inline methods: `operator[]()`, `operator*()`, the implicit conversion
|
||||
functions `operator T*()`, `operator const T*()`, and the explicit
|
||||
conversion template functions `operator U*()`, `operator const U*()` (with
|
||||
any suitable type U). In certain cases, using these methods may have
|
||||
undefined behavior, e.g. if the host pointer is not currently valid. */
|
||||
template <typename T>
|
||||
class Memory
|
||||
{
|
||||
protected:
|
||||
friend class MemoryManager;
|
||||
friend void MemoryPrintFlags(unsigned flags);
|
||||
|
||||
enum FlagMask
|
||||
{
|
||||
REGISTERED = 1, ///< #h_ptr is registered with the MemoryManager
|
||||
OWNS_HOST = 2, ///< The host pointer will be deleted by Delete()
|
||||
OWNS_DEVICE = 4, ///< The device pointer will be deleted by Delete()
|
||||
OWNS_INTERNAL = 8, ///< Ownership flag for internal Memory data
|
||||
VALID_HOST = 16, ///< Host pointer is valid
|
||||
VALID_DEVICE = 32, ///< Device pointer is valid
|
||||
ALIAS = 64,
|
||||
/// Internal device flag, see e.g. Vector::UseDevice()
|
||||
USE_DEVICE = 128
|
||||
};
|
||||
|
||||
/// Pointer to host memory. Not owned.
|
||||
/** When the pointer is not registered with the MemoryManager, this pointer
|
||||
has type MemoryType::HOST. When the pointer is registered, it can be any
|
||||
type from MemoryClass::HOST. */
|
||||
T *h_ptr;
|
||||
int capacity;
|
||||
mutable unsigned flags;
|
||||
// 'flags' is mutable so that it can be modified in Set{Host,Device}PtrOwner,
|
||||
// Copy{From,To}, {ReadWrite,Read,Write}.
|
||||
|
||||
public:
|
||||
/// Default constructor: no initialization.
|
||||
Memory() { }
|
||||
|
||||
/// Copy constructor: default.
|
||||
Memory(const Memory &orig) = default;
|
||||
|
||||
/// Move constructor: default.
|
||||
Memory(Memory &&orig) = default;
|
||||
|
||||
/// Copy-assignment operator: default.
|
||||
Memory &operator=(const Memory &orig) = default;
|
||||
|
||||
/// Move-assignment operator: default.
|
||||
Memory &operator=(Memory &&orig) = default;
|
||||
|
||||
/// Allocate host memory for @a size entries.
|
||||
explicit Memory(int size) { New(size); }
|
||||
|
||||
/** @brief Allocate memory for @a size entries with the given MemoryType
|
||||
@a mt. */
|
||||
/** The newly allocated memory is not initialized, however the given
|
||||
MemoryType is still set as valid. */
|
||||
Memory(int size, MemoryType mt) { New(size, mt); }
|
||||
|
||||
/** @brief Wrap an externally allocated host pointer, @a ptr with type
|
||||
MemoryType::HOST. */
|
||||
/** The parameter @a own determines whether @a ptr will be deleted (using
|
||||
operator delete[]) when the method Delete() is called. */
|
||||
explicit Memory(T *ptr, int size, bool own) { Wrap(ptr, size, own); }
|
||||
|
||||
/// Wrap an externally allocated pointer, @a ptr, of the given MemoryType.
|
||||
/** The new memory object will have the given MemoryType set as valid.
|
||||
|
||||
The given @a ptr must be allocated appropriately for the given
|
||||
MemoryType.
|
||||
|
||||
The parameter @a own determines whether @a ptr will be deleted when the
|
||||
method Delete() is called. */
|
||||
Memory(T *ptr, int size, MemoryType mt, bool own)
|
||||
{ Wrap(ptr, size, mt, own); }
|
||||
|
||||
/** @brief Alias constructor. Create a Memory object that points inside the
|
||||
Memory object @a base. */
|
||||
/** The new Memory object uses the same MemoryType(s) as @a base. */
|
||||
Memory(const Memory &base, int offset, int size)
|
||||
{ MakeAlias(base, offset, size); }
|
||||
|
||||
/// Destructor: default.
|
||||
/** @note The destructor will NOT delete the current memory. */
|
||||
~Memory() = default;
|
||||
|
||||
/** @brief Return true if the host pointer is owned. Ownership indicates
|
||||
whether the pointer will be deleted by the method Delete(). */
|
||||
bool OwnsHostPtr() const { return flags & OWNS_HOST; }
|
||||
|
||||
/** @brief Set/clear the ownership flag for the host pointer. Ownership
|
||||
indicates whether the pointer will be deleted by the method Delete(). */
|
||||
void SetHostPtrOwner(bool own) const
|
||||
{ flags = own ? (flags | OWNS_HOST) : (flags & ~OWNS_HOST); }
|
||||
|
||||
/** @brief Return true if the device pointer is owned. Ownership indicates
|
||||
whether the pointer will be deleted by the method Delete(). */
|
||||
bool OwnsDevicePtr() const { return flags & OWNS_DEVICE; }
|
||||
|
||||
/** @brief Set/clear the ownership flag for the device pointer. Ownership
|
||||
indicates whether the pointer will be deleted by the method Delete(). */
|
||||
void SetDevicePtrOwner(bool own) const
|
||||
{ flags = own ? (flags | OWNS_DEVICE) : (flags & ~OWNS_DEVICE); }
|
||||
|
||||
/** @brief Clear the ownership flags for the host and device pointers, as
|
||||
well as any internal data allocated by the Memory object. */
|
||||
void ClearOwnerFlags() const
|
||||
{ flags = flags & ~(OWNS_HOST | OWNS_DEVICE | OWNS_INTERNAL); }
|
||||
|
||||
/// Read the internal device flag.
|
||||
bool UseDevice() const { return flags & USE_DEVICE; }
|
||||
|
||||
/// Set the internal device flag.
|
||||
void UseDevice(bool use_dev) const
|
||||
{ flags = use_dev ? (flags | USE_DEVICE) : (flags & ~USE_DEVICE); }
|
||||
|
||||
/// Return the size of the allocated memory.
|
||||
int Capacity() const { return capacity; }
|
||||
|
||||
/// Reset the memory to be empty, ensuring that Delete() will be a no-op.
|
||||
/** This is the Memory class equivalent to setting a pointer to NULL, see
|
||||
Empty().
|
||||
|
||||
@note The current memory is NOT deleted by this method. */
|
||||
void Reset() { h_ptr = NULL; capacity = 0; flags = 0; }
|
||||
|
||||
/// Return true if the Memory object is empty, see Reset().
|
||||
/** Default-constructed objects are uninitialized, so they are not guaranteed
|
||||
to be empty. */
|
||||
bool Empty() const { return h_ptr == NULL; }
|
||||
|
||||
/// Allocate host memory for @a size entries with type MemoryType::HOST.
|
||||
/** @note The current memory is NOT deleted by this method. */
|
||||
void New(int size)
|
||||
{ h_ptr = new T[size]; capacity = size; flags = OWNS_HOST | VALID_HOST; }
|
||||
|
||||
/// Allocate memory for @a size entries with the given MemoryType.
|
||||
/** The newly allocated memory is not initialized, however the given
|
||||
MemoryType is still set as valid.
|
||||
|
||||
@note The current memory is NOT deleted by this method. */
|
||||
inline void New(int size, MemoryType mt);
|
||||
|
||||
/** @brief Wrap an externally allocated host pointer, @a ptr with type
|
||||
MemoryType::HOST. */
|
||||
/** The parameter @a own determines whether @a ptr will be deleted (using
|
||||
operator delete[]) when the method Delete() is called.
|
||||
|
||||
@note The current memory is NOT deleted by this method. */
|
||||
inline void Wrap(T *ptr, int size, bool own)
|
||||
{ h_ptr = ptr; capacity = size; flags = (own ? OWNS_HOST : 0) | VALID_HOST; }
|
||||
|
||||
/// Wrap an externally allocated pointer, @a ptr, of the given MemoryType.
|
||||
/** The new memory object will have the given MemoryType set as valid.
|
||||
|
||||
The given @a ptr must be allocated appropriately for the given
|
||||
MemoryType.
|
||||
|
||||
The parameter @a own determines whether @a ptr will be deleted when the
|
||||
method Delete() is called.
|
||||
|
||||
@note The current memory is NOT deleted by this method. */
|
||||
inline void Wrap(T *ptr, int size, MemoryType mt, bool own);
|
||||
|
||||
/// Create a memory object that points inside the memory object @a base.
|
||||
/** The new Memory object uses the same MemoryType(s) as @a base.
|
||||
|
||||
@note The current memory is NOT deleted by this method. */
|
||||
inline void MakeAlias(const Memory &base, int offset, int size);
|
||||
|
||||
/// Delete the owned pointers. The Memory is not reset by this method.
|
||||
inline void Delete();
|
||||
|
||||
/// Array subscript operator for host memory.
|
||||
inline T &operator[](int idx);
|
||||
|
||||
/// Array subscript operator for host memory, const version.
|
||||
inline const T &operator[](int idx) const;
|
||||
|
||||
/// Direct access to the host memory as T* (implicit conversion).
|
||||
/** When the type T is const-qualified, this method can be used only if the
|
||||
host pointer is currently valid (the device pointer may be valid or
|
||||
invalid).
|
||||
|
||||
When the type T is not const-qualified, this method can be used only if
|
||||
the host pointer is the only valid pointer.
|
||||
|
||||
When the Memory is empty, this method can be used and it returns NULL. */
|
||||
inline operator T*();
|
||||
|
||||
/// Direct access to the host memory as const T* (implicit conversion).
|
||||
/** This method can be used only if the host pointer is currently valid (the
|
||||
device pointer may be valid or invalid).
|
||||
|
||||
When the Memory is empty, this method can be used and it returns NULL. */
|
||||
inline operator const T*() const;
|
||||
|
||||
/// Direct access to the host memory via explicit typecast.
|
||||
/** A pointer to type T must be reinterpret_cast-able to a pointer to type U.
|
||||
In particular, this method cannot be used to cast away const-ness from
|
||||
the base type T.
|
||||
|
||||
When the type U is const-qualified, this method can be used only if the
|
||||
host pointer is currently valid (the device pointer may be valid or
|
||||
invalid).
|
||||
|
||||
When the type U is not const-qualified, this method can be used only if
|
||||
the host pointer is the only valid pointer.
|
||||
|
||||
When the Memory is empty, this method can be used and it returns NULL. */
|
||||
template <typename U>
|
||||
inline explicit operator U*();
|
||||
|
||||
/// Direct access to the host memory via explicit typecast, const version.
|
||||
/** A pointer to type T must be reinterpret_cast-able to a pointer to type
|
||||
const U.
|
||||
|
||||
This method can be used only if the host pointer is currently valid (the
|
||||
device pointer may be valid or invalid).
|
||||
|
||||
When the Memory is empty, this method can be used and it returns NULL. */
|
||||
template <typename U>
|
||||
inline explicit operator const U*() const;
|
||||
|
||||
/// Get read-write access to the memory with the given MemoryClass.
|
||||
/** If only read or only write access is needed, then the methods
|
||||
Read() or Write() should be used instead of this method.
|
||||
|
||||
The parameter @a size must not exceed the Capacity(). */
|
||||
inline T *ReadWrite(MemoryClass mc, int size);
|
||||
|
||||
/// Get read-only access to the memory with the given MemoryClass.
|
||||
/** The parameter @a size must not exceed the Capacity(). */
|
||||
inline const T *Read(MemoryClass mc, int size) const;
|
||||
|
||||
/// Get write-only access to the memory with the given MemoryClass.
|
||||
/** The parameter @a size must not exceed the Capacity().
|
||||
|
||||
The contents of the returned pointer is undefined, unless it was
|
||||
validated by a previous call to Read() or ReadWrite() with
|
||||
the same MemoryClass. */
|
||||
inline T *Write(MemoryClass mc, int size);
|
||||
|
||||
/// Copy the host/device pointer validity flags from @a other to @a *this.
|
||||
/** This method synchronizes the pointer validity flags of two Memory objects
|
||||
that use the same host/device pointers, or when @a *this is an alias
|
||||
(sub-Memory) of @a other. Typically, this method should be called after
|
||||
@a other is manipulated in a way that changes its pointer validity flags
|
||||
(e.g. it was moved from device to host memory). */
|
||||
inline void Sync(const Memory &other) const;
|
||||
|
||||
/** @brief Update the alias Memory @a *this to match the memory location (all
|
||||
valid locations) of its base Memory, @a base. */
|
||||
/** This method is useful when alias Memory is moved and manipulated in a
|
||||
different memory space. Such operations render the pointer validity flags
|
||||
of the base incorrect. Calling this method will ensure that @a base is
|
||||
up-to-date. Note that this is achieved by moving/copying @a *this (if
|
||||
necessary), and not @a base. */
|
||||
inline void SyncAlias(const Memory &base, int alias_size) const;
|
||||
|
||||
/** @brief Return a MemoryType that is currently valid. If both the host and
|
||||
the device pointers are currently valid, then the device memory type is
|
||||
returned. */
|
||||
inline MemoryType GetMemoryType() const;
|
||||
|
||||
/// Copy @a size entries from @a src to @a *this.
|
||||
/** The given @a size should not exceed the Capacity() of the source @a src
|
||||
and the destination, @a *this. */
|
||||
inline void CopyFrom(const Memory &src, int size);
|
||||
|
||||
/// Copy @a size entries from the host pointer @a src to @a *this.
|
||||
/** The given @a size should not exceed the Capacity() of @a *this. */
|
||||
inline void CopyFromHost(const T *src, int size);
|
||||
|
||||
/// Copy @a size entries from @a *this to @a dest.
|
||||
/** The given @a size should not exceed the Capacity() of @a *this and the
|
||||
destination, @a dest. */
|
||||
inline void CopyTo(Memory &dest, int size) const
|
||||
{ dest.CopyFrom(*this, size); }
|
||||
|
||||
/// Copy @a size entries from @a *this to the host pointer @a dest.
|
||||
/** The given @a size should not exceed the Capacity() of @a *this. */
|
||||
inline void CopyToHost(T *dest, int size) const;
|
||||
};
|
||||
|
||||
|
||||
/// The memory manager class
|
||||
class MemoryManager
|
||||
{
|
||||
private:
|
||||
/// Allow to enable/disable the Ptr, Pull and Push functionalities
|
||||
/// New and Delete will still continue to register the pointers
|
||||
bool enabled;
|
||||
template <typename T> friend class Memory;
|
||||
// Used by the private static methods called by class Memory:
|
||||
typedef Memory<int> Mem;
|
||||
|
||||
/// Allow to detect if a global memory manager instance exists
|
||||
static bool exists;
|
||||
|
||||
// Methods used by class Memory
|
||||
|
||||
// Allocate and register a new pointer. Return the host pointer.
|
||||
// h_ptr must be already allocated using new T[] if mt is a pure device
|
||||
// memory type, e.g. CUDA (mt will not be HOST).
|
||||
static void *New_(void *h_ptr, std::size_t size, MemoryType mt,
|
||||
unsigned &flags);
|
||||
|
||||
// Register an external pointer of the given MemoryType. Return the host
|
||||
// pointer.
|
||||
static void *Register_(void *ptr, void *h_ptr, std::size_t capacity,
|
||||
MemoryType mt, bool own, bool alias, unsigned &flags);
|
||||
|
||||
// Register an alias. Return the host pointer. Note: base_h_ptr may be an
|
||||
// alias.
|
||||
static void Alias_(void *base_h_ptr, std::size_t offset, std::size_t size,
|
||||
unsigned base_flags, unsigned &flags);
|
||||
|
||||
// Un-register and free memory identified by its host pointer. Returns the
|
||||
// memory type of the host pointer.
|
||||
static MemoryType Delete_(void *h_ptr, unsigned flags);
|
||||
|
||||
// Return a pointer to the memory identified by the host pointer h_ptr for
|
||||
// access with the given MemoryClass.
|
||||
static void *ReadWrite_(void *h_ptr, MemoryClass mc, std::size_t size,
|
||||
unsigned &flags);
|
||||
|
||||
static const void *Read_(void *h_ptr, MemoryClass mc, std::size_t size,
|
||||
unsigned &flags);
|
||||
|
||||
static void *Write_(void *h_ptr, MemoryClass mc, std::size_t size,
|
||||
unsigned &flags);
|
||||
|
||||
static void SyncAlias_(const void *base_h_ptr, void *alias_h_ptr,
|
||||
size_t alias_size, unsigned base_flags,
|
||||
unsigned &alias_flags);
|
||||
|
||||
// Return the type the of the currently valid memory. If more than one types
|
||||
// are valid, return a device type.
|
||||
static MemoryType GetMemoryType_(void *h_ptr, unsigned flags);
|
||||
|
||||
// Copy entries from valid memory type to valid memory type. Both dest_h_ptr
|
||||
// and src_h_ptr are registered host pointers.
|
||||
static void Copy_(void *dest_h_ptr, const void *src_h_ptr, std::size_t size,
|
||||
unsigned src_flags, unsigned &dest_flags);
|
||||
|
||||
// Copy entries from valid memory type to host memory, where dest_h_ptr is
|
||||
// not a registered host pointer and src_h_ptr is a registered host pointer.
|
||||
static void CopyToHost_(void *dest_h_ptr, const void *src_h_ptr,
|
||||
std::size_t size, unsigned src_flags);
|
||||
|
||||
// Copy entries from host memory to valid memory type, where dest_h_ptr is a
|
||||
// registered host pointer and src_h_ptr is not a registered host pointer.
|
||||
static void CopyFromHost_(void *dest_h_ptr, const void *src_h_ptr,
|
||||
std::size_t size, unsigned &dest_flags);
|
||||
|
||||
/// Adds an address in the map
|
||||
void *Insert(void *ptr, const std::size_t bytes);
|
||||
|
||||
void InsertDevice(void *ptr, void *h_ptr, size_t bytes);
|
||||
|
||||
/// Remove the address from the map, as well as all its aliases
|
||||
void *Erase(void *ptr, bool free_dev_ptr = true);
|
||||
|
||||
/// Return the corresponding device pointer of ptr, allocating and moving the
|
||||
/// data if needed (used in OccaPtr)
|
||||
void *GetDevicePtr(const void *ptr, size_t bytes, bool copy_data);
|
||||
|
||||
void InsertAlias(const void *base_ptr, void *alias_ptr, bool base_is_alias);
|
||||
|
||||
void EraseAlias(void *alias_ptr);
|
||||
|
||||
void *GetAliasDevicePtr(const void *alias_ptr, size_t bytes, bool copy_data);
|
||||
|
||||
/// Return true if the pointer has been registered
|
||||
bool IsKnown(const void *ptr);
|
||||
|
||||
public:
|
||||
MemoryManager();
|
||||
~MemoryManager();
|
||||
|
||||
/// Adds an address in the map
|
||||
void *Insert(void *ptr, const std::size_t bytes);
|
||||
|
||||
/// Remove the address from the map, as well as all its aliases
|
||||
void *Erase(void *ptr);
|
||||
|
||||
/// Return true if the memory manager is used: pointers seen by mfem::New and
|
||||
/// mfem::Delete will be inserted in the ledger and erased from it
|
||||
static inline bool UsingMM()
|
||||
{
|
||||
#ifdef MFEM_USE_MM
|
||||
return true;
|
||||
#else
|
||||
return false;
|
||||
#endif
|
||||
}
|
||||
|
||||
/// Disable the memory manager: Ptr, Push and Pull will be no-op
|
||||
void Disable() { enabled = false; }
|
||||
|
||||
/// Enable the memory manager: Ptr, Push and Pull wont be no-op
|
||||
void Enable() { enabled = true; }
|
||||
|
||||
/// Return true if the memory manager is used and enabled
|
||||
bool IsEnabled() { return UsingMM() && enabled; }
|
||||
|
||||
/// The opposite of IsEnabled().
|
||||
bool IsDisabled() { return !IsEnabled(); }
|
||||
void Destroy();
|
||||
|
||||
/// Return true if a global memory manager instance exists
|
||||
static bool Exists() { return exists; }
|
||||
|
||||
/** @brief Translates ptr to host or device address, depending on what
|
||||
backends are currently allowed by the Device class and on the ptr
|
||||
state. */
|
||||
void *Ptr(void *ptr);
|
||||
const void *Ptr(const void *ptr);
|
||||
|
||||
/// Data will be pushed/pulled before the copy happens on the H or the D
|
||||
void* Memcpy(void *dst, const void *src,
|
||||
std::size_t bytes, const bool async = false);
|
||||
|
||||
/// Return the bytes of the memory region which base address is ptr
|
||||
std::size_t Bytes(const void *ptr);
|
||||
|
||||
/// Return true if the registered pointer is on the host side
|
||||
bool IsOnHost(const void *ptr);
|
||||
|
||||
/// Return true if the pointer has been registered
|
||||
bool IsKnown(const void *ptr);
|
||||
|
||||
/// Return true if the pointer is an alias inside a registered memory region
|
||||
bool IsAlias(const void *ptr);
|
||||
|
||||
/// Push the data to the device
|
||||
void Push(const void *ptr, const std::size_t bytes =0);
|
||||
|
||||
/// Pull the data from the device
|
||||
void Pull(const void *ptr, const std::size_t bytes =0);
|
||||
|
||||
/// Return the corresponding device pointer of ptr, allocating and moving the
|
||||
/// data if needed (used in OccaPtr)
|
||||
void *GetDevicePtr(const void *ptr);
|
||||
|
||||
/// Registers external host pointer in the memory manager which will manage
|
||||
/// the corresponding device pointer, but not the provided host pointer.
|
||||
template<class T>
|
||||
void RegisterHostPtr(T *ptr_host, const std::size_t size)
|
||||
{
|
||||
Insert(ptr_host, size*sizeof(T));
|
||||
#ifdef MFEM_DEBUG
|
||||
RegisterCheck(ptr_host);
|
||||
#endif
|
||||
}
|
||||
|
||||
/// Registers external host and device pointers in the memory manager.
|
||||
template<class T>
|
||||
void RegisterHostAndDevicePtr(T *ptr_host, T *ptr_device,
|
||||
const std::size_t size, const bool host)
|
||||
{
|
||||
RegisterHostPtr(ptr_host, size);
|
||||
SetHostDevicePtr(ptr_host, ptr_device, host);
|
||||
}
|
||||
|
||||
/// Set the host h_ptr, device d_ptr and mode host of the memory region just
|
||||
/// been registered with h_ptr (see RegisterHostAndDevicePtr)
|
||||
void SetHostDevicePtr(void *h_ptr, void *d_ptr, const bool host);
|
||||
|
||||
/// Unregisters the host pointer from the memory manager. To be used with
|
||||
/// memory not allocated by the memory manager.
|
||||
template<class T>
|
||||
void UnregisterHostPtr(T *ptr) { Erase(ptr); }
|
||||
|
||||
/// Check if pointer has been registered in the memory manager
|
||||
void RegisterCheck(void *ptr);
|
||||
|
||||
/// Prints all pointers known by the memory manager
|
||||
void PrintPtrs(void);
|
||||
|
||||
/// Copies all memory to the current memory space
|
||||
void GetAll(void);
|
||||
};
|
||||
|
||||
|
||||
// Inline methods
|
||||
|
||||
template <typename T>
|
||||
inline void Memory<T>::New(int size, MemoryType mt)
|
||||
{
|
||||
if (mt == MemoryType::HOST)
|
||||
{
|
||||
New(size);
|
||||
}
|
||||
else
|
||||
{
|
||||
// Allocate the host pointer with new T[] if 'mt' is a pure device memory
|
||||
// type, e.g. CUDA.
|
||||
T *tmp = (mt == MemoryType::CUDA) ? new T[size] : NULL;
|
||||
h_ptr = (T*)MemoryManager::New_(tmp, size*sizeof(T), mt, flags);
|
||||
capacity = size;
|
||||
}
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline void Memory<T>::Wrap(T *ptr, int size, MemoryType mt, bool own)
|
||||
{
|
||||
if (mt == MemoryType::HOST)
|
||||
{
|
||||
Wrap(ptr, size, own);
|
||||
}
|
||||
else
|
||||
{
|
||||
// Allocate the host pointer with new T[] if 'mt' is a pure device memory
|
||||
// type, e.g. CUDA.
|
||||
T *tmp = (mt == MemoryType::CUDA) ? new T[size] : NULL;
|
||||
h_ptr = (T*)MemoryManager::Register_(ptr, tmp, size*sizeof(T), mt, own,
|
||||
false, flags);
|
||||
capacity = size;
|
||||
}
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline void Memory<T>::MakeAlias(const Memory &base, int offset, int size)
|
||||
{
|
||||
h_ptr = base.h_ptr + offset;
|
||||
capacity = size;
|
||||
if (!(base.flags & REGISTERED))
|
||||
{
|
||||
flags = (base.flags | ALIAS) & ~(OWNS_HOST | OWNS_DEVICE);
|
||||
}
|
||||
else
|
||||
{
|
||||
MemoryManager::Alias_(base.h_ptr, offset*sizeof(T), size*sizeof(T),
|
||||
base.flags, flags);
|
||||
}
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline void Memory<T>::Delete()
|
||||
{
|
||||
if (!(flags & REGISTERED) ||
|
||||
MemoryManager::Delete_((void*)h_ptr, flags) == MemoryType::HOST)
|
||||
{
|
||||
if (flags & OWNS_HOST) { delete [] h_ptr; }
|
||||
}
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline T &Memory<T>::operator[](int idx)
|
||||
{
|
||||
MFEM_ASSERT((flags & VALID_HOST) && !(flags & VALID_DEVICE),
|
||||
"invalid host pointer access");
|
||||
return h_ptr[idx];
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline const T &Memory<T>::operator[](int idx) const
|
||||
{
|
||||
MFEM_ASSERT((flags & VALID_HOST), "invalid host pointer access");
|
||||
return h_ptr[idx];
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline Memory<T>::operator T*()
|
||||
{
|
||||
MFEM_ASSERT(Empty() ||
|
||||
((flags & VALID_HOST) &&
|
||||
(std::is_const<T>::value || !(flags & VALID_DEVICE))),
|
||||
"invalid host pointer access");
|
||||
return h_ptr;
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline Memory<T>::operator const T*() const
|
||||
{
|
||||
MFEM_ASSERT(Empty() || (flags & VALID_HOST), "invalid host pointer access");
|
||||
return h_ptr;
|
||||
}
|
||||
|
||||
template <typename T> template <typename U>
|
||||
inline Memory<T>::operator U*()
|
||||
{
|
||||
MFEM_ASSERT(Empty() ||
|
||||
((flags & VALID_HOST) &&
|
||||
(std::is_const<U>::value || !(flags & VALID_DEVICE))),
|
||||
"invalid host pointer access");
|
||||
return reinterpret_cast<U*>(h_ptr);
|
||||
}
|
||||
|
||||
template <typename T> template <typename U>
|
||||
inline Memory<T>::operator const U*() const
|
||||
{
|
||||
MFEM_ASSERT(Empty() || (flags & VALID_HOST), "invalid host pointer access");
|
||||
return reinterpret_cast<U*>(h_ptr);
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline T *Memory<T>::ReadWrite(MemoryClass mc, int size)
|
||||
{
|
||||
if (!(flags & REGISTERED))
|
||||
{
|
||||
if (mc == MemoryClass::HOST) { return h_ptr; }
|
||||
MemoryManager::Register_(h_ptr, NULL, capacity*sizeof(T),
|
||||
MemoryType::HOST, flags & OWNS_HOST,
|
||||
flags & ALIAS, flags);
|
||||
}
|
||||
return (T*)MemoryManager::ReadWrite_(h_ptr, mc, size*sizeof(T), flags);
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline const T *Memory<T>::Read(MemoryClass mc, int size) const
|
||||
{
|
||||
if (!(flags & REGISTERED))
|
||||
{
|
||||
if (mc == MemoryClass::HOST) { return h_ptr; }
|
||||
MemoryManager::Register_((void*)h_ptr, NULL, capacity*sizeof(T),
|
||||
MemoryType::HOST, flags & OWNS_HOST,
|
||||
flags & ALIAS, flags);
|
||||
}
|
||||
return (const T *)MemoryManager::Read_(
|
||||
(void*)h_ptr, mc, size*sizeof(T), flags);
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline T *Memory<T>::Write(MemoryClass mc, int size)
|
||||
{
|
||||
if (!(flags & REGISTERED))
|
||||
{
|
||||
if (mc == MemoryClass::HOST) { return h_ptr; }
|
||||
MemoryManager::Register_(h_ptr, NULL, capacity*sizeof(T),
|
||||
MemoryType::HOST, flags & OWNS_HOST,
|
||||
flags & ALIAS, flags);
|
||||
}
|
||||
return (T*)MemoryManager::Write_(h_ptr, mc, size*sizeof(T), flags);
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline void Memory<T>::Sync(const Memory &other) const
|
||||
{
|
||||
if (!(flags & REGISTERED) && (other.flags & REGISTERED))
|
||||
{
|
||||
MFEM_ASSERT(h_ptr == other.h_ptr &&
|
||||
(flags & ALIAS) == (other.flags & ALIAS),
|
||||
"invalid input");
|
||||
flags = (flags | REGISTERED) & ~(OWNS_DEVICE | OWNS_INTERNAL);
|
||||
}
|
||||
flags = (flags & ~(VALID_HOST | VALID_DEVICE)) |
|
||||
(other.flags & (VALID_HOST | VALID_DEVICE));
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline void Memory<T>::SyncAlias(const Memory &base, int alias_size) const
|
||||
{
|
||||
// Assuming that if *this is registered then base is also registered.
|
||||
MFEM_ASSERT(!(flags & REGISTERED) || (base.flags & REGISTERED),
|
||||
"invalid base state");
|
||||
if (!(base.flags & REGISTERED)) { return; }
|
||||
MemoryManager::SyncAlias_(base.h_ptr, h_ptr, alias_size*sizeof(T),
|
||||
base.flags, flags);
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline MemoryType Memory<T>::GetMemoryType() const
|
||||
{
|
||||
if (!(flags & REGISTERED)) { return MemoryType::HOST; }
|
||||
return MemoryManager::GetMemoryType_(h_ptr, flags);
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline void Memory<T>::CopyFrom(const Memory &src, int size)
|
||||
{
|
||||
if (!(flags & REGISTERED) && !(src.flags & REGISTERED))
|
||||
{
|
||||
if (h_ptr != src.h_ptr && size != 0)
|
||||
{
|
||||
MFEM_ASSERT(h_ptr + size <= src || src + size <= h_ptr,
|
||||
"data overlaps!");
|
||||
std::memcpy(h_ptr, src, size*sizeof(T));
|
||||
}
|
||||
// *this is not registered, so (flags & VALID_HOST) must be true
|
||||
}
|
||||
else
|
||||
{
|
||||
MemoryManager::Copy_(h_ptr, src.h_ptr, size*sizeof(T), src.flags, flags);
|
||||
}
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline void Memory<T>::CopyFromHost(const T *src, int size)
|
||||
{
|
||||
if (!(flags & REGISTERED))
|
||||
{
|
||||
if (h_ptr != src && size != 0)
|
||||
{
|
||||
MFEM_ASSERT(h_ptr + size <= src || src + size <= h_ptr,
|
||||
"data overlaps!");
|
||||
std::memcpy(h_ptr, src, size*sizeof(T));
|
||||
}
|
||||
// *this is not registered, so (flags & VALID_HOST) must be true
|
||||
}
|
||||
else
|
||||
{
|
||||
MemoryManager::CopyFromHost_(h_ptr, src, size*sizeof(T), flags);
|
||||
}
|
||||
}
|
||||
|
||||
template <typename T>
|
||||
inline void Memory<T>::CopyToHost(T *dest, int size) const
|
||||
{
|
||||
if (!(flags & REGISTERED))
|
||||
{
|
||||
if (h_ptr != dest && size != 0)
|
||||
{
|
||||
MFEM_ASSERT(h_ptr + size <= dest || dest + size <= h_ptr,
|
||||
"data overlaps!");
|
||||
std::memcpy(dest, h_ptr, size*sizeof(T));
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
MemoryManager::CopyToHost_(dest, h_ptr, size*sizeof(T), flags);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/** @brief Print the state of a Memory object based on its internal flags.
|
||||
Useful in a debugger. */
|
||||
extern void MemoryPrintFlags(unsigned flags);
|
||||
|
||||
|
||||
/// The (single) global memory manager object
|
||||
extern MemoryManager mm;
|
||||
|
||||
/// Main memory allocation template function. Allocates n*size bytes and returns
|
||||
/// a pointer to the allocated memory.
|
||||
template<class T>
|
||||
inline T *New(const std::size_t n)
|
||||
{
|
||||
T *ptr = new T[n];
|
||||
if (!MemoryManager::Exists()) { return ptr; }
|
||||
return static_cast<T*>(mm.Insert(ptr, n*sizeof(T)));
|
||||
}
|
||||
|
||||
/// Frees the memory space pointed to by ptr, which must have been returned by a
|
||||
/// previous call to mfem::New.
|
||||
template<class T>
|
||||
inline void Delete(T *ptr)
|
||||
{
|
||||
static_assert(!std::is_void<T>::value, "Cannot Delete a void pointer. "
|
||||
"Explicitly provide the correct type as a template parameter.");
|
||||
if (!ptr) { return; }
|
||||
delete [] ptr;
|
||||
if (!MemoryManager::Exists()) { return; }
|
||||
mm.Erase(ptr);
|
||||
}
|
||||
|
||||
/// Return a host or device address corresponding to current memory space
|
||||
template <class T>
|
||||
inline T *Ptr(T *a) { return static_cast<T*>(mm.Ptr(a)); }
|
||||
|
||||
/// Data will be pushed/pulled before the copy happens on the host or the device
|
||||
inline void* Memcpy(void *dst, const void *src,
|
||||
std::size_t bytes, const bool async = false)
|
||||
{ return mm.Memcpy(dst, src, bytes, async); }
|
||||
|
||||
/// Push the data to the device
|
||||
inline void Push(const void *ptr, const std::size_t bytes = 0)
|
||||
{ return mm.Push(ptr, bytes); }
|
||||
|
||||
/// Pull the data from the device
|
||||
inline void Pull(const void *ptr, const std::size_t bytes = 0)
|
||||
{ return mm.Pull(ptr, bytes); }
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_MEM_MANAGER_HPP
|
||||
|
||||
+16
-33
@@ -9,53 +9,36 @@
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "forall.hpp"
|
||||
#include "occa.hpp"
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
#include "device.hpp"
|
||||
|
||||
#if defined(MFEM_USE_CUDA) && OCCA_CUDA_ENABLED
|
||||
#include <occa/modes/cuda/utils.hpp>
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// This variable is defined in device.cpp:
|
||||
namespace internal { extern OccaDevice occaDevice; }
|
||||
namespace internal { extern occa::device occaDevice; }
|
||||
|
||||
static OccaMemory OccaWrapMemory(const OccaDevice dev, const void *d_adrs,
|
||||
const size_t bytes)
|
||||
occa::device &OccaDev() { return internal::occaDevice; }
|
||||
|
||||
occa::memory OccaMemoryWrap(void *ptr, std::size_t bytes)
|
||||
{
|
||||
// This function is called when an OCCA kernel is going to be used.
|
||||
#ifdef MFEM_USE_OCCA
|
||||
void *adrs = const_cast<void*>(d_adrs);
|
||||
#if defined(MFEM_USE_CUDA) && OCCA_CUDA_ENABLED
|
||||
// If OCCA_CUDA is allowed, it will be used since it has the highest priority
|
||||
if (Device::Allows(Backend::OCCA_CUDA))
|
||||
{
|
||||
return occa::cuda::wrapMemory(dev, adrs, bytes);
|
||||
return occa::cuda::wrapMemory(internal::occaDevice, ptr, bytes);
|
||||
}
|
||||
#endif // MFEM_USE_CUDA && OCCA_CUDA_ENABLED
|
||||
// otherwise, fallback to occa::cpu address space
|
||||
return occa::cpu::wrapMemory(dev, adrs, bytes);
|
||||
#else // MFEM_USE_OCCA
|
||||
return (void*)NULL;
|
||||
#endif
|
||||
return occa::cpu::wrapMemory(internal::occaDevice, ptr, bytes);
|
||||
}
|
||||
|
||||
OccaMemory OccaPtr(const void *ptr)
|
||||
{
|
||||
// This function is called when 'ptr' needs to be passed to an OCCA kernel.
|
||||
OccaDevice dev = internal::occaDevice;
|
||||
if (!mm.UsingMM()) { return OccaWrapMemory(dev, ptr, 0); }
|
||||
const bool known = mm.IsKnown(ptr);
|
||||
if (!known) { mfem_error("OccaPtr: Unknown address!"); }
|
||||
const bool ptr_on_host = mm.IsOnHost(ptr);
|
||||
const size_t bytes = mm.Bytes(ptr);
|
||||
const bool run_on_host = !Device::Allows(Backend::DEVICE_MASK);
|
||||
// If the priority of a host OCCA backend is higher than all device OCCA
|
||||
// backends, then we will need to run-on-host even if the Device allows a
|
||||
// device backend.
|
||||
if (ptr_on_host && run_on_host) { return OccaWrapMemory(dev, ptr, bytes); }
|
||||
if (run_on_host) { mfem_error("OccaPtr: !ptr_on_host && run_on_host"); }
|
||||
void *d_ptr = mm.GetDevicePtr(ptr);
|
||||
return OccaWrapMemory(dev, d_ptr, bytes);
|
||||
}
|
||||
|
||||
OccaDevice OccaDev() { return internal::occaDevice; }
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_OCCA
|
||||
|
||||
+59
-17
@@ -15,29 +15,71 @@
|
||||
#include "../config/config.hpp"
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
#include "mem_manager.hpp"
|
||||
#include "device.hpp"
|
||||
#include <occa.hpp>
|
||||
|
||||
#if defined(MFEM_USE_CUDA) && OCCA_CUDA_ENABLED
|
||||
#include <occa/modes/cuda/utils.hpp>
|
||||
#endif
|
||||
|
||||
typedef occa::device OccaDevice;
|
||||
typedef occa::memory OccaMemory;
|
||||
|
||||
#else // MFEM_USE_OCCA
|
||||
|
||||
typedef void* OccaDevice;
|
||||
typedef void* OccaMemory;
|
||||
|
||||
#endif // MFEM_USE_OCCA
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// Function called when the pointer 'a' needs to be passed to an OCCA kernel.
|
||||
OccaMemory OccaPtr(const void *a);
|
||||
OccaDevice OccaDev();
|
||||
/// Return the default occa::device used by MFEM.
|
||||
occa::device &OccaDev();
|
||||
|
||||
/// Wrap a pointer as occa::memory with the default occa::device used by MFEM.
|
||||
/** It is assumed that @a ptr is suitable for use with the current mfem::Device
|
||||
configuration. */
|
||||
occa::memory OccaMemoryWrap(void *ptr, std::size_t bytes);
|
||||
|
||||
/** @brief Wrap a Memory object as occa::memory for read only access with the
|
||||
mfem::Device MemoryClass. The returned occa::memory is associated with the
|
||||
default occa::device used by MFEM. */
|
||||
template <typename T>
|
||||
const occa::memory OccaMemoryRead(const Memory<T> &mem, size_t size)
|
||||
{
|
||||
mem.UseDevice(true);
|
||||
const void *ptr = mem.Read(Device::GetMemoryClass(), size);
|
||||
return OccaMemoryWrap(const_cast<void *>(ptr), size*sizeof(T));
|
||||
}
|
||||
|
||||
/** @brief Wrap a Memory object as occa::memory for write only access with the
|
||||
mfem::Device MemoryClass. The returned occa::memory is associated with the
|
||||
default occa::device used by MFEM. */
|
||||
template <typename T>
|
||||
occa::memory OccaMemoryWrite(Memory<T> &mem, size_t size)
|
||||
{
|
||||
mem.UseDevice(true);
|
||||
return OccaMemoryWrap(mem.Write(Device::GetMemoryClass(), size),
|
||||
size*sizeof(T));
|
||||
}
|
||||
|
||||
/** @brief Wrap a Memory object as occa::memory for read-write access with the
|
||||
mfem::Device MemoryClass. The returned occa::memory is associated with the
|
||||
default occa::device used by MFEM. */
|
||||
template <typename T>
|
||||
occa::memory OccaMemoryReadWrite(Memory<T> &mem, size_t size)
|
||||
{
|
||||
mem.UseDevice(true);
|
||||
return OccaMemoryWrap(mem.ReadWrite(Device::GetMemoryClass(), size),
|
||||
size*sizeof(T));
|
||||
}
|
||||
|
||||
|
||||
/** @brief Function that determines if an OCCA kernel should be used, based on
|
||||
the current mfem::Device configuration. */
|
||||
inline bool DeviceCanUseOcca()
|
||||
{
|
||||
return Device::Allows(Backend::OCCA_CUDA) ||
|
||||
(Device::Allows(Backend::OCCA_OMP) &&
|
||||
!Device::Allows(Backend::DEVICE_MASK)) ||
|
||||
(Device::Allows(Backend::OCCA_CPU) &&
|
||||
!Device::Allows(Backend::DEVICE_MASK|Backend::OMP_MASK));
|
||||
}
|
||||
|
||||
typedef std::pair<int,int> occa_id_t;
|
||||
typedef std::map<occa_id_t, occa::kernel> occa_kernel_t;
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_OCCA
|
||||
|
||||
#endif // MFEM_OCCA_HPP
|
||||
|
||||
@@ -43,6 +43,8 @@ private:
|
||||
const char *description;
|
||||
bool required;
|
||||
|
||||
Option() = default;
|
||||
|
||||
Option(OptionType _type, void *_var_ptr, const char *_short_name,
|
||||
const char *_long_name, const char *_description, bool req)
|
||||
: type(_type), var_ptr(_var_ptr), short_name(_short_name),
|
||||
|
||||
@@ -26,6 +26,8 @@ public:
|
||||
A one;
|
||||
B two;
|
||||
|
||||
Pair() = default;
|
||||
|
||||
Pair(const A &one, const B &two) : one(one), two(two) {}
|
||||
};
|
||||
|
||||
|
||||
+44
-48
@@ -15,7 +15,7 @@
|
||||
#include "table.hpp"
|
||||
#include "error.hpp"
|
||||
|
||||
#include "../general/forall.hpp"
|
||||
#include "../general/mem_manager.hpp"
|
||||
#include <iostream>
|
||||
#include <iomanip>
|
||||
|
||||
@@ -30,14 +30,14 @@ Table::Table(const Table &table)
|
||||
if (size >= 0)
|
||||
{
|
||||
const int nnz = table.I[size];
|
||||
I = mfem::New<int>(size+1);
|
||||
J = mfem::New<int>(nnz);
|
||||
memcpy(I, table.I, sizeof(int)*(size+1));
|
||||
memcpy(J, table.J, sizeof(int)*nnz);
|
||||
I.New(size+1, table.I.GetMemoryType());
|
||||
J.New(nnz, table.J.GetMemoryType());
|
||||
I.CopyFrom(table.I, size+1);
|
||||
J.CopyFrom(table.J, nnz);
|
||||
}
|
||||
else
|
||||
{
|
||||
I = J = NULL;
|
||||
I.Reset(); J.Reset();
|
||||
}
|
||||
}
|
||||
|
||||
@@ -56,8 +56,8 @@ Table::Table (int dim, int connections_per_row)
|
||||
int i, j, sum = dim * connections_per_row;
|
||||
|
||||
size = dim;
|
||||
I = mfem::New<int>(size+1);
|
||||
J = mfem::New<int>(sum);
|
||||
I.New(size+1);
|
||||
J.New(sum);
|
||||
|
||||
I[0] = 0;
|
||||
for (i = 1; i <= size; i++)
|
||||
@@ -71,8 +71,8 @@ Table::Table (int nrows, int *partitioning)
|
||||
{
|
||||
size = nrows;
|
||||
|
||||
I = mfem::New<int>(size+1);
|
||||
J = mfem::New<int>(size);
|
||||
I.New(size+1);
|
||||
J.New(size);
|
||||
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
@@ -101,8 +101,8 @@ void Table::MakeJ()
|
||||
j = I[i], I[i] = k, k += j;
|
||||
}
|
||||
|
||||
if (J) { mfem::Delete(J); }
|
||||
J = mfem::New<int>(I[size]=k);
|
||||
J.Delete();
|
||||
J.New(I[size]=k);
|
||||
}
|
||||
|
||||
void Table::AddConnections (int r, const int *c, int nc)
|
||||
@@ -149,14 +149,14 @@ void Table::SetDims(int rows, int nnz)
|
||||
if (size != rows)
|
||||
{
|
||||
size = rows;
|
||||
if (I) { mfem::Delete(I); }
|
||||
I = (rows >= 0) ? (mfem::New<int>(rows+1)) : (NULL);
|
||||
I.Delete();
|
||||
(rows >= 0) ? I.New(rows+1) : I.Reset();
|
||||
}
|
||||
|
||||
if (j != nnz)
|
||||
{
|
||||
if (J) { mfem::Delete(J); }
|
||||
J = (nnz > 0) ? (mfem::New<int>(nnz)) : (NULL);
|
||||
J.Delete();
|
||||
(nnz > 0) ? J.New(nnz) : J.Reset();
|
||||
}
|
||||
|
||||
if (size >= 0)
|
||||
@@ -207,14 +207,14 @@ void Table::SortRows()
|
||||
|
||||
void Table::SetIJ(int *newI, int *newJ, int newsize)
|
||||
{
|
||||
mfem::Delete(I);
|
||||
mfem::Delete(J);
|
||||
I = newI;
|
||||
J = newJ;
|
||||
I.Delete();
|
||||
J.Delete();
|
||||
if (newsize >= 0)
|
||||
{
|
||||
size = newsize;
|
||||
}
|
||||
I.Wrap(newI, size+1, true);
|
||||
J.Wrap(newJ, I[size], true);
|
||||
}
|
||||
|
||||
int Table::Push(int i, int j)
|
||||
@@ -222,6 +222,7 @@ int Table::Push(int i, int j)
|
||||
MFEM_ASSERT( i >=0 && i<size, "Index out of bounds. i = "<<i);
|
||||
|
||||
for (int k = I[i], end = I[i+1]; k < end; k++)
|
||||
{
|
||||
if (J[k] == j)
|
||||
{
|
||||
return k;
|
||||
@@ -231,6 +232,7 @@ int Table::Push(int i, int j)
|
||||
J[k] = j;
|
||||
return k;
|
||||
}
|
||||
}
|
||||
|
||||
MFEM_ABORT("Reached end of loop unexpectedly: (i,j) = (" << i << ", " << j
|
||||
<< ")");
|
||||
@@ -243,14 +245,16 @@ void Table::Finalize()
|
||||
int i, j, end, sum = 0, n = 0, newI = 0;
|
||||
|
||||
for (i=0; i<I[size]; i++)
|
||||
{
|
||||
if (J[i] != -1)
|
||||
{
|
||||
sum++;
|
||||
}
|
||||
}
|
||||
|
||||
if (sum != I[size])
|
||||
{
|
||||
int *NewJ = mfem::New<int>(sum);
|
||||
int *NewJ = new int[sum];
|
||||
|
||||
for (i=0; i<size; i++)
|
||||
{
|
||||
@@ -265,9 +269,9 @@ void Table::Finalize()
|
||||
}
|
||||
I[size] = sum;
|
||||
|
||||
mfem::Delete(J);
|
||||
J.Delete();
|
||||
|
||||
J = NewJ;
|
||||
J.Wrap(NewJ, sum, true);
|
||||
|
||||
MFEM_ASSERT(sum == n, "sum = " << sum << ", n = " << n);
|
||||
}
|
||||
@@ -280,8 +284,8 @@ void Table::MakeFromList(int nrows, const Array<Connection> &list)
|
||||
size = nrows;
|
||||
int nnz = list.Size();
|
||||
|
||||
I = mfem::New<int>(size+1);
|
||||
J = mfem::New<int>(nnz);
|
||||
I.New(size+1);
|
||||
J.New(nnz);
|
||||
|
||||
for (int i = 0, k = 0; i <= size; i++)
|
||||
{
|
||||
@@ -331,10 +335,12 @@ void Table::PrintMatlab(std::ostream & out) const
|
||||
int i, j;
|
||||
|
||||
for (i = 0; i < size; i++)
|
||||
{
|
||||
for (j = I[i]; j < I[i+1]; j++)
|
||||
{
|
||||
out << i << " " << J[j] << " 1. \n";
|
||||
}
|
||||
}
|
||||
|
||||
out << flush;
|
||||
}
|
||||
@@ -355,17 +361,17 @@ void Table::Save(std::ostream &out) const
|
||||
|
||||
void Table::Load(std::istream &in)
|
||||
{
|
||||
mfem::Delete(I);
|
||||
mfem::Delete(J);
|
||||
I.Delete();
|
||||
J.Delete();
|
||||
|
||||
in >> size;
|
||||
I = mfem::New<int>(size+1);
|
||||
I.New(size+1);
|
||||
for (int i = 0; i <= size; i++)
|
||||
{
|
||||
in >> I[i];
|
||||
}
|
||||
int nnz = I[size];
|
||||
J =mfem::New<int>(nnz);
|
||||
J.New(nnz);
|
||||
for (int j = 0; j < nnz; j++)
|
||||
{
|
||||
in >> J[j];
|
||||
@@ -374,28 +380,16 @@ void Table::Load(std::istream &in)
|
||||
|
||||
void Table::Clear()
|
||||
{
|
||||
mfem::Delete(I);
|
||||
mfem::Delete(J);
|
||||
I.Delete();
|
||||
J.Delete();
|
||||
size = -1;
|
||||
I = J = NULL;
|
||||
I.Reset();
|
||||
J.Reset();
|
||||
}
|
||||
|
||||
void Table::Copy(Table & copy) const
|
||||
{
|
||||
if (size >= 0)
|
||||
{
|
||||
int * i_copy = mfem::New<int>(size+1);
|
||||
int * j_copy = mfem::New<int>(I[size]);
|
||||
|
||||
memcpy(i_copy, I, sizeof(int)*(size+1));
|
||||
memcpy(j_copy, J, sizeof(int)*I[size]);
|
||||
|
||||
copy.SetIJ(i_copy, j_copy, size);
|
||||
}
|
||||
else
|
||||
{
|
||||
copy.Clear();
|
||||
}
|
||||
copy = *this;
|
||||
}
|
||||
|
||||
void Table::Swap(Table & other)
|
||||
@@ -413,8 +407,8 @@ long Table::MemoryUsage() const
|
||||
|
||||
Table::~Table ()
|
||||
{
|
||||
if (I) { mfem::Delete(I); }
|
||||
if (J) { mfem::Delete(J); }
|
||||
I.Delete();
|
||||
J.Delete();
|
||||
}
|
||||
|
||||
void Transpose (const Table &A, Table &At, int _ncols_A)
|
||||
@@ -444,10 +438,12 @@ void Transpose (const Table &A, Table &At, int _ncols_A)
|
||||
}
|
||||
|
||||
for (int i = 0; i < nrows_A; i++)
|
||||
{
|
||||
for (int j = i_A[i]; j < i_A[i+1]; j++)
|
||||
{
|
||||
j_At[i_At[j_A[j]]++] = i;
|
||||
}
|
||||
}
|
||||
for (int i = ncols_A; i > 0; i--)
|
||||
{
|
||||
i_At[i] = i_At[i-1];
|
||||
|
||||
+13
-6
@@ -27,6 +27,7 @@ namespace mfem
|
||||
struct Connection
|
||||
{
|
||||
int from, to;
|
||||
Connection() = default;
|
||||
Connection(int from, int to) : from(from), to(to) {}
|
||||
|
||||
bool operator== (const Connection &rhs) const
|
||||
@@ -42,18 +43,17 @@ struct Connection
|
||||
class Table
|
||||
{
|
||||
protected:
|
||||
|
||||
/// size is the number of TYPE I elements.
|
||||
int size;
|
||||
|
||||
/** Arrays for the connectivity information in the CSR storage.
|
||||
I is of size "size+1", J is of size the number of connections
|
||||
between TYPE I to TYPE II elements (actually stored I[size]). */
|
||||
int *I, *J;
|
||||
Memory<int> I, J;
|
||||
|
||||
public:
|
||||
/// Creates an empty table
|
||||
Table() { size = -1; I = J = NULL; }
|
||||
Table() { size = -1; I.Reset(); J.Reset(); }
|
||||
|
||||
/// Copy constructor
|
||||
Table(const Table &);
|
||||
@@ -65,8 +65,8 @@ public:
|
||||
explicit Table (int dim, int connections_per_row = 3);
|
||||
|
||||
/** Create a table from a list of connections, see MakeFromList(). */
|
||||
Table(int nrows, Array<Connection> &list) : size(-1), I(NULL), J(NULL)
|
||||
{ MakeFromList(nrows, list); }
|
||||
Table(int nrows, Array<Connection> &list) : size(-1)
|
||||
{ I.Reset(); J.Reset(); MakeFromList(nrows, list); }
|
||||
|
||||
/** Create a table with one entry per row with column indices given
|
||||
by 'partitioning'. */
|
||||
@@ -115,9 +115,16 @@ public:
|
||||
const int *GetI() const { return I; }
|
||||
const int *GetJ() const { return J; }
|
||||
|
||||
Memory<int> &GetIMemory() { return I; }
|
||||
Memory<int> &GetJMemory() { return J; }
|
||||
const Memory<int> &GetIMemory() const { return I; }
|
||||
const Memory<int> &GetJMemory() const { return J; }
|
||||
|
||||
/// @brief Sort the column (TYPE II) indices in each row.
|
||||
void SortRows();
|
||||
|
||||
/// Replace the #I and #J arrays with the given @a newI and @a newJ arrays.
|
||||
/** If @a newsize < 0, then the size of the Table is not modified. */
|
||||
void SetIJ(int *newI, int *newJ, int newsize = -1);
|
||||
|
||||
/** Establish connection between element i and element j in the table.
|
||||
@@ -144,7 +151,7 @@ public:
|
||||
int Width() const;
|
||||
|
||||
/// Call this if data has been stolen.
|
||||
void LoseData() { size = -1; I = J = NULL; }
|
||||
void LoseData() { size = -1; I.Reset(); J.Reset(); }
|
||||
|
||||
/// Prints the table to stream out.
|
||||
void Print(std::ostream & out = mfem::out, int width = 4) const;
|
||||
|
||||
+31
-3
@@ -50,11 +50,13 @@ BlockMatrix::BlockMatrix(const Array<int> & row_offsets_,
|
||||
BlockMatrix::~BlockMatrix()
|
||||
{
|
||||
if (owns_blocks)
|
||||
{
|
||||
for (SparseMatrix ** it = Aij.GetRow(0);
|
||||
it != Aij.GetRow(0)+(Aij.NumRows()*Aij.NumCols()); ++it)
|
||||
{
|
||||
delete *it;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void BlockMatrix::SetBlock(int i, int j, SparseMatrix * mat)
|
||||
@@ -116,6 +118,7 @@ int BlockMatrix::NumNonZeroElems() const
|
||||
{
|
||||
int nnz_elem = 0;
|
||||
for (int jcol = 0; jcol != nColBlocks; ++jcol)
|
||||
{
|
||||
for (int irow = 0; irow != nRowBlocks; ++irow)
|
||||
{
|
||||
if (Aij(irow,jcol))
|
||||
@@ -123,6 +126,7 @@ int BlockMatrix::NumNonZeroElems() const
|
||||
nnz_elem+= Aij(irow,jcol)->NumNonZeroElems();
|
||||
}
|
||||
}
|
||||
}
|
||||
return nnz_elem;
|
||||
}
|
||||
|
||||
@@ -167,10 +171,12 @@ int BlockMatrix::RowSize(const int i) const
|
||||
findGlobalRow(i, iblock, iloc);
|
||||
|
||||
for (int jblock = 0; jblock < nColBlocks; ++jblock)
|
||||
{
|
||||
if (Aij(iblock,jblock) != NULL)
|
||||
{
|
||||
rowsize += Aij(iblock,jblock)->RowSize(iloc);
|
||||
}
|
||||
}
|
||||
|
||||
return rowsize;
|
||||
}
|
||||
@@ -190,6 +196,7 @@ int BlockMatrix::GetRow(const int row, Array<int> &cols, Vector &srow) const
|
||||
double *it_srow = srow.GetData();
|
||||
|
||||
for (int jblock = 0; jblock < nColBlocks; ++jblock)
|
||||
{
|
||||
if (Aij(iblock,jblock) != NULL)
|
||||
{
|
||||
Aij(iblock,jblock)->GetRow(iloc, bcols, bsrow);
|
||||
@@ -199,6 +206,7 @@ int BlockMatrix::GetRow(const int row, Array<int> &cols, Vector &srow) const
|
||||
*(it_srow++) = bsrow(i);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return 0;
|
||||
}
|
||||
@@ -249,12 +257,14 @@ void BlockMatrix::EliminateRowCol(Array<int> & ess_bc_dofs, Vector & sol,
|
||||
}
|
||||
|
||||
for (int iiblock = 0; iiblock < nRowBlocks; ++iiblock)
|
||||
{
|
||||
if (row_offsets[iiblock] != col_offsets[iiblock])
|
||||
{
|
||||
mfem::out << "BlockMatrix::EliminateRowCol: row_offests["
|
||||
<< iiblock << "] != col_offsets["<<iiblock<<"]\n";
|
||||
mfem_error();
|
||||
}
|
||||
}
|
||||
|
||||
// We also have to do the same for each Aij
|
||||
Array<int> block_dofs;
|
||||
@@ -270,18 +280,22 @@ void BlockMatrix::EliminateRowCol(Array<int> & ess_bc_dofs, Vector & sol,
|
||||
if (Aij(iiblock, iiblock))
|
||||
{
|
||||
for (int i = 0; i < block_dofs.Size(); ++i)
|
||||
{
|
||||
if (block_dofs[i])
|
||||
{
|
||||
Aij(iiblock, iiblock)->EliminateRowCol(i,block_sol(i), block_rhs);
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int i = 0; i < block_dofs.Size(); ++i)
|
||||
{
|
||||
if (block_dofs[i])
|
||||
{
|
||||
mfem_error("BlockMatrix::EliminateRowCol: Null diagonal block \n");
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int jjblock = 0; jjblock < nRowBlocks; ++jjblock)
|
||||
@@ -289,10 +303,12 @@ void BlockMatrix::EliminateRowCol(Array<int> & ess_bc_dofs, Vector & sol,
|
||||
if (jjblock != iiblock && Aij(iiblock, jjblock))
|
||||
{
|
||||
for (int i = 0; i < block_dofs.Size(); ++i)
|
||||
{
|
||||
if (block_dofs[i])
|
||||
{
|
||||
Aij(iiblock, jjblock)->EliminateRow(i);
|
||||
}
|
||||
}
|
||||
}
|
||||
if (jjblock != iiblock && Aij(jjblock, iiblock))
|
||||
{
|
||||
@@ -325,11 +341,13 @@ void BlockMatrix::EliminateZeroRows(const double threshold)
|
||||
if (norm <= threshold)
|
||||
{
|
||||
for (int jblock = 0; jblock < nColBlocks; ++jblock)
|
||||
{
|
||||
if (Aij(iblock,jblock))
|
||||
{
|
||||
Aij(iblock,jblock)->EliminateRow(
|
||||
i, (iblock==jblock) ? DIAG_ONE : DIAG_ZERO);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -340,10 +358,12 @@ void BlockMatrix::EliminateZeroRows(const double threshold)
|
||||
{
|
||||
norm = 0.;
|
||||
for (int jblock = 0; jblock < nColBlocks; ++jblock)
|
||||
{
|
||||
if (Aij(iblock,jblock))
|
||||
{
|
||||
norm += Aij(iblock,jblock)->GetRowNorml1(i);
|
||||
}
|
||||
}
|
||||
|
||||
MFEM_VERIFY(!(norm <= threshold), "diagonal block is NULL:"
|
||||
" iblock = " << iblock << ", i = " << i << ", norm = "
|
||||
@@ -455,9 +475,9 @@ SparseMatrix * BlockMatrix::CreateMonolithic() const
|
||||
{
|
||||
int nnz = NumNonZeroElems();
|
||||
|
||||
int * i_amono = mfem::New<int>(row_offsets[nRowBlocks]+2);
|
||||
int * j_amono = mfem::New<int>(nnz);
|
||||
double * data = mfem::New<double>(nnz);
|
||||
int * i_amono = new int[row_offsets[nRowBlocks]+2];
|
||||
int * j_amono = new int[nnz];
|
||||
double * data = new double[nnz];
|
||||
|
||||
for (int i = 0; i < row_offsets[nRowBlocks]+2; i++)
|
||||
{
|
||||
@@ -562,11 +582,15 @@ BlockMatrix * Transpose(const BlockMatrix & A)
|
||||
At->owns_blocks = 1;
|
||||
|
||||
for (int irowAt = 0; irowAt < At->NumRowBlocks(); ++irowAt)
|
||||
{
|
||||
for (int jcolAt = 0; jcolAt < At->NumColBlocks(); ++jcolAt)
|
||||
{
|
||||
if (!A.IsZeroBlock(jcolAt, irowAt))
|
||||
{
|
||||
At->SetBlock(irowAt, jcolAt, Transpose(A.GetBlock(jcolAt, irowAt)));
|
||||
}
|
||||
}
|
||||
}
|
||||
return At;
|
||||
}
|
||||
|
||||
@@ -577,14 +601,17 @@ BlockMatrix * Mult(const BlockMatrix & A, const BlockMatrix & B)
|
||||
Array<SparseMatrix *> CijPieces(A.NumColBlocks());
|
||||
|
||||
for (int irowC = 0; irowC < A.NumRowBlocks(); ++irowC)
|
||||
{
|
||||
for (int jcolC = 0; jcolC < B.NumColBlocks(); ++jcolC)
|
||||
{
|
||||
CijPieces.SetSize(0, static_cast<SparseMatrix *>(NULL));
|
||||
for (int k = 0; k < A.NumColBlocks(); ++k)
|
||||
{
|
||||
if (!A.IsZeroBlock(irowC, k) && !B.IsZeroBlock(k, jcolC))
|
||||
{
|
||||
CijPieces.Append(Mult(A.GetBlock(irowC, k), B.GetBlock(k, jcolC)));
|
||||
}
|
||||
}
|
||||
|
||||
if (CijPieces.Size() > 1)
|
||||
{
|
||||
@@ -600,6 +627,7 @@ BlockMatrix * Mult(const BlockMatrix & A, const BlockMatrix & B)
|
||||
C->SetBlock(irowC, jcolC, CijPieces[0]);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return C;
|
||||
}
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user