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@@ -29,3 +29,47 @@ jobs:
|
||||
operations-per-run: 500
|
||||
exempt-issue-labels: "bug,WIP,ready-for-review,in-review,in-next"
|
||||
exempt-pr-labels: "bug,WIP,ready-for-review,in-review,in-next"
|
||||
|
||||
# Stale action for PRs with "in-review" label.
|
||||
stale-in-review-pr:
|
||||
|
||||
runs-on: ubuntu-latest
|
||||
permissions:
|
||||
issues: write
|
||||
pull-requests: write
|
||||
actions: write
|
||||
|
||||
steps:
|
||||
- uses: actions/stale@v9
|
||||
with:
|
||||
repo-token: ${{ secrets.GITHUB_TOKEN }}
|
||||
stale-pr-message: ':warning: This PR has been automatically marked as stale because it has not had any activity in the last 150 days. *If no activity occurs in the next 30 days, it will be automatically closed.* Thank you for your contributions.'
|
||||
only-pr-labels: "in-review"
|
||||
days-before-pr-stale: 150
|
||||
days-before-pr-close: 30
|
||||
days-before-issue-stale: -1
|
||||
days-before-issue-close: -1
|
||||
stale-pr-label: 'stale'
|
||||
operations-per-run: 500
|
||||
|
||||
# Stale action for PRs with "WIP" label.
|
||||
stale-wip-pr:
|
||||
|
||||
runs-on: ubuntu-latest
|
||||
permissions:
|
||||
issues: write
|
||||
pull-requests: write
|
||||
actions: write
|
||||
|
||||
steps:
|
||||
- uses: actions/stale@v9
|
||||
with:
|
||||
repo-token: ${{ secrets.GITHUB_TOKEN }}
|
||||
stale-pr-message: ':warning: This PR has been automatically marked as stale because it has not had any activity in the last 300 days. *If no activity occurs in the next 30 days, it will be automatically closed.* Thank you for your contributions.'
|
||||
only-pr-labels: "WIP"
|
||||
days-before-pr-stale: 300
|
||||
days-before-pr-close: 30
|
||||
days-before-issue-stale: -1
|
||||
days-before-issue-close: -1
|
||||
stale-pr-label: 'stale'
|
||||
operations-per-run: 500
|
||||
|
||||
@@ -197,16 +197,6 @@ if (HYPRE_FOUND AND HYPRE_USING_HIP)
|
||||
message(STATUS "Updated HYPRE_LIBRARIES: ${HYPRE_LIBRARIES}")
|
||||
endif()
|
||||
|
||||
# Hypre+Umpire check
|
||||
if (HYPRE_FOUND AND (HYPRE_USING_CUDA OR HYPRE_USING_HIP) AND NOT MFEM_USE_UMPIRE)
|
||||
message(WARNING
|
||||
"===============================================================
|
||||
Detected GPU-enabled HYPRE build without Umpire support.
|
||||
This is not recommended for performance reasons!
|
||||
Consider rebuilding HYPRE with Umpire support.
|
||||
===============================================================")
|
||||
endif()
|
||||
|
||||
find_package_handle_standard_args(HYPRE
|
||||
REQUIRED_VARS HYPRE_LIBRARIES HYPRE_INCLUDE_DIRS HYPRE_VERSION
|
||||
)
|
||||
|
||||
+1
-1
@@ -57,7 +57,7 @@ CUDA_DIR = $(or $(CUDA_HOME),$(patsubst %/,%,$(dir \
|
||||
CLANG_CUDA_FLAGS = -xcuda --cuda-path=$(CUDA_DIR) --cuda-gpu-arch=$(CUDA_ARCH)
|
||||
# flags for nvcc
|
||||
NVCC_FLAGS = -x=cu --expt-extended-lambda --expt-relaxed-constexpr \
|
||||
-arch=$(CUDA_ARCH)
|
||||
-arch=$(CUDA_ARCH) -isystem "$(CUDA_DIR)/include"
|
||||
# Prefixes for passing flags to the host compiler and linker when using
|
||||
# CUDA_CXX=nvcc
|
||||
CUDA_XCOMPILER = -Xcompiler=
|
||||
|
||||
+593
@@ -0,0 +1,593 @@
|
||||
MFEM mesh v1.0
|
||||
|
||||
# Created by: Pointwise
|
||||
|
||||
# MFEM Geometry Types:
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
elements
|
||||
160
|
||||
1 3 1 164 163 0
|
||||
1 3 164 165 162 163
|
||||
1 3 2 166 164 1
|
||||
1 3 166 132 165 164
|
||||
1 3 3 167 166 2
|
||||
1 3 167 131 132 166
|
||||
1 3 4 168 167 3
|
||||
1 3 168 130 131 167
|
||||
1 3 5 169 168 4
|
||||
1 3 169 129 130 168
|
||||
1 3 6 170 169 5
|
||||
1 3 170 128 129 169
|
||||
1 3 171 172 170 6
|
||||
1 3 172 127 128 170
|
||||
1 3 124 125 172 171
|
||||
1 3 125 126 127 172
|
||||
1 3 162 165 173 161
|
||||
1 3 165 132 133 173
|
||||
1 3 161 173 174 160
|
||||
1 3 173 133 134 174
|
||||
1 3 160 174 175 159
|
||||
1 3 174 134 135 175
|
||||
1 3 6 7 176 171
|
||||
1 3 7 8 177 176
|
||||
1 3 171 176 123 124
|
||||
1 3 176 177 122 123
|
||||
1 3 159 175 178 158
|
||||
1 3 175 135 136 178
|
||||
1 3 158 178 179 157
|
||||
1 3 178 136 137 179
|
||||
1 3 157 179 180 156
|
||||
1 3 179 137 138 180
|
||||
1 3 122 177 181 121
|
||||
1 3 177 8 182 181
|
||||
1 3 8 9 183 182
|
||||
1 3 9 10 184 183
|
||||
1 3 10 11 185 184
|
||||
1 3 11 12 186 185
|
||||
1 3 12 13 187 186
|
||||
1 3 13 14 15 187
|
||||
1 3 121 181 119 120
|
||||
1 3 181 182 118 119
|
||||
1 3 182 183 117 118
|
||||
1 3 183 184 188 117
|
||||
1 3 184 185 109 188
|
||||
1 3 185 186 108 109
|
||||
1 3 186 187 189 108
|
||||
1 3 187 15 16 189
|
||||
1 3 109 110 190 188
|
||||
1 3 110 111 191 190
|
||||
1 3 111 112 113 191
|
||||
1 3 188 190 116 117
|
||||
1 3 190 191 115 116
|
||||
1 3 191 113 114 115
|
||||
1 3 189 192 107 108
|
||||
1 3 192 193 106 107
|
||||
1 3 193 194 105 106
|
||||
1 3 194 195 104 105
|
||||
1 3 195 196 103 104
|
||||
1 3 16 17 192 189
|
||||
1 3 17 18 193 192
|
||||
1 3 18 19 194 193
|
||||
1 3 19 20 195 194
|
||||
1 3 20 21 196 195
|
||||
1 3 97 98 197 96
|
||||
1 3 98 99 198 197
|
||||
1 3 99 100 199 198
|
||||
1 3 100 101 200 199
|
||||
1 3 101 102 201 200
|
||||
1 3 102 103 202 201
|
||||
1 3 103 196 203 202
|
||||
1 3 196 21 22 203
|
||||
1 3 96 197 204 95
|
||||
1 3 197 198 39 204
|
||||
1 3 198 199 38 39
|
||||
1 3 199 200 205 38
|
||||
1 3 200 201 32 205
|
||||
1 3 201 202 31 32
|
||||
1 3 202 203 206 31
|
||||
1 3 203 22 23 206
|
||||
1 3 32 33 207 205
|
||||
1 3 33 34 35 207
|
||||
1 3 205 207 37 38
|
||||
1 3 207 35 36 37
|
||||
1 3 39 40 208 204
|
||||
1 3 40 41 209 208
|
||||
1 3 41 42 210 209
|
||||
1 3 42 43 211 210
|
||||
1 3 43 44 212 211
|
||||
1 3 204 208 94 95
|
||||
1 3 208 209 93 94
|
||||
1 3 209 210 92 93
|
||||
1 3 210 211 91 92
|
||||
1 3 211 212 90 91
|
||||
1 3 90 212 213 89
|
||||
1 3 212 44 214 213
|
||||
1 3 44 45 215 214
|
||||
1 3 45 46 216 215
|
||||
1 3 46 47 217 216
|
||||
1 3 47 48 218 217
|
||||
1 3 48 49 219 218
|
||||
1 3 49 50 51 219
|
||||
1 3 89 213 87 88
|
||||
1 3 213 214 86 87
|
||||
1 3 214 215 85 86
|
||||
1 3 215 216 84 85
|
||||
1 3 216 217 83 84
|
||||
1 3 217 218 82 83
|
||||
1 3 218 219 220 82
|
||||
1 3 219 51 52 220
|
||||
1 3 53 221 220 52
|
||||
1 3 221 81 82 220
|
||||
1 3 54 222 221 53
|
||||
1 3 222 80 81 221
|
||||
1 3 55 223 222 54
|
||||
1 3 223 79 80 222
|
||||
1 3 26 27 224 25
|
||||
1 3 27 28 29 224
|
||||
1 3 25 224 225 24
|
||||
1 3 224 29 30 225
|
||||
1 3 24 225 206 23
|
||||
1 3 225 30 31 206
|
||||
1 3 154 155 226 153
|
||||
1 3 155 156 180 226
|
||||
1 3 153 226 227 152
|
||||
1 3 226 180 138 227
|
||||
1 3 152 227 228 151
|
||||
1 3 227 138 139 228
|
||||
1 3 151 228 229 150
|
||||
1 3 228 139 140 229
|
||||
1 3 150 229 230 149
|
||||
1 3 229 140 141 230
|
||||
1 3 149 230 231 148
|
||||
1 3 230 141 142 231
|
||||
1 3 148 231 232 147
|
||||
1 3 231 142 143 232
|
||||
1 3 147 232 145 146
|
||||
1 3 232 143 144 145
|
||||
1 3 56 233 223 55
|
||||
1 3 233 78 79 223
|
||||
1 3 57 234 233 56
|
||||
1 3 234 77 78 233
|
||||
1 3 58 235 234 57
|
||||
1 3 235 76 77 234
|
||||
1 3 61 236 59 60
|
||||
1 3 236 235 58 59
|
||||
1 3 62 237 236 61
|
||||
1 3 237 76 235 236
|
||||
1 3 63 238 237 62
|
||||
1 3 238 75 76 237
|
||||
1 3 64 239 238 63
|
||||
1 3 239 74 75 238
|
||||
1 3 65 240 239 64
|
||||
1 3 240 73 74 239
|
||||
1 3 66 241 240 65
|
||||
1 3 241 72 73 240
|
||||
1 3 67 242 241 66
|
||||
1 3 242 71 72 241
|
||||
1 3 68 69 242 67
|
||||
1 3 69 70 71 242
|
||||
|
||||
boundary
|
||||
164
|
||||
3 1 0 1
|
||||
3 1 1 2
|
||||
3 1 2 3
|
||||
3 1 3 4
|
||||
3 1 4 5
|
||||
3 1 5 6
|
||||
3 1 6 7
|
||||
3 1 7 8
|
||||
3 1 8 9
|
||||
3 1 9 10
|
||||
3 1 10 11
|
||||
3 1 11 12
|
||||
3 1 12 13
|
||||
3 1 13 14
|
||||
3 1 16 17
|
||||
3 1 17 18
|
||||
3 1 18 19
|
||||
3 1 19 20
|
||||
3 1 20 21
|
||||
3 1 21 22
|
||||
3 1 22 23
|
||||
3 1 23 24
|
||||
3 1 24 25
|
||||
3 1 25 26
|
||||
3 1 26 27
|
||||
3 1 27 28
|
||||
3 1 28 29
|
||||
3 1 29 30
|
||||
3 1 30 31
|
||||
3 1 31 32
|
||||
3 1 32 33
|
||||
3 1 33 34
|
||||
3 1 34 35
|
||||
3 1 35 36
|
||||
3 1 36 37
|
||||
3 1 37 38
|
||||
3 1 38 39
|
||||
3 1 39 40
|
||||
3 1 40 41
|
||||
3 1 41 42
|
||||
3 1 42 43
|
||||
3 1 43 44
|
||||
3 1 49 50
|
||||
3 1 48 49
|
||||
3 1 47 48
|
||||
3 1 46 47
|
||||
3 1 45 46
|
||||
3 1 44 45
|
||||
3 1 52 53
|
||||
3 1 53 54
|
||||
3 1 54 55
|
||||
3 1 57 58
|
||||
3 1 56 57
|
||||
3 1 55 56
|
||||
3 1 60 61
|
||||
3 1 61 62
|
||||
3 1 62 63
|
||||
3 1 63 64
|
||||
3 1 64 65
|
||||
3 1 65 66
|
||||
3 1 66 67
|
||||
3 1 67 68
|
||||
3 1 75 76
|
||||
3 1 74 75
|
||||
3 1 73 74
|
||||
3 1 72 73
|
||||
3 1 71 72
|
||||
3 1 70 71
|
||||
3 1 76 77
|
||||
3 1 77 78
|
||||
3 1 78 79
|
||||
3 1 81 82
|
||||
3 1 80 81
|
||||
3 1 79 80
|
||||
3 1 82 83
|
||||
3 1 83 84
|
||||
3 1 84 85
|
||||
3 1 85 86
|
||||
3 1 86 87
|
||||
3 1 87 88
|
||||
3 1 94 95
|
||||
3 1 93 94
|
||||
3 1 92 93
|
||||
3 1 91 92
|
||||
3 1 90 91
|
||||
3 1 96 97
|
||||
3 1 95 96
|
||||
3 1 97 98
|
||||
3 1 98 99
|
||||
3 1 99 100
|
||||
3 1 100 101
|
||||
3 1 101 102
|
||||
3 1 102 103
|
||||
3 1 107 108
|
||||
3 1 106 107
|
||||
3 1 105 106
|
||||
3 1 104 105
|
||||
3 1 103 104
|
||||
3 1 108 109
|
||||
3 1 109 110
|
||||
3 1 110 111
|
||||
3 1 111 112
|
||||
3 1 112 113
|
||||
3 1 113 114
|
||||
3 1 114 115
|
||||
3 1 115 116
|
||||
3 1 116 117
|
||||
3 1 119 120
|
||||
3 1 118 119
|
||||
3 1 117 118
|
||||
3 1 131 132
|
||||
3 1 130 131
|
||||
3 1 129 130
|
||||
3 1 128 129
|
||||
3 1 127 128
|
||||
3 1 126 127
|
||||
3 1 132 133
|
||||
3 1 133 134
|
||||
3 1 134 135
|
||||
3 1 137 138
|
||||
3 1 136 137
|
||||
3 1 135 136
|
||||
3 1 138 139
|
||||
3 1 139 140
|
||||
3 1 140 141
|
||||
3 1 141 142
|
||||
3 1 142 143
|
||||
3 1 143 144
|
||||
3 1 147 148
|
||||
3 1 146 147
|
||||
3 1 153 154
|
||||
3 1 152 153
|
||||
3 1 151 152
|
||||
3 1 150 151
|
||||
3 1 149 150
|
||||
3 1 148 149
|
||||
3 1 156 157
|
||||
3 1 157 158
|
||||
3 1 158 159
|
||||
3 1 161 162
|
||||
3 1 160 161
|
||||
3 1 159 160
|
||||
2 1 69 70
|
||||
2 1 68 69
|
||||
3 1 88 89
|
||||
3 1 89 90
|
||||
3 1 121 122
|
||||
3 1 120 121
|
||||
3 1 123 124
|
||||
3 1 122 123
|
||||
3 1 125 126
|
||||
3 1 124 125
|
||||
1 1 144 145
|
||||
1 1 145 146
|
||||
3 1 15 16
|
||||
3 1 14 15
|
||||
3 1 50 51
|
||||
3 1 51 52
|
||||
3 1 59 60
|
||||
3 1 58 59
|
||||
3 1 154 155
|
||||
3 1 155 156
|
||||
3 1 163 0
|
||||
3 1 162 163
|
||||
|
||||
vertices
|
||||
243
|
||||
2
|
||||
4 4
|
||||
4 3.5
|
||||
4 3
|
||||
4 2.5
|
||||
4 2
|
||||
4 1.5
|
||||
4 1
|
||||
4.5 1
|
||||
5 1
|
||||
5 1.5
|
||||
5 2
|
||||
5 2.5
|
||||
5 3
|
||||
5 3.5
|
||||
5 4
|
||||
5.500 4
|
||||
6 4
|
||||
6.500 4
|
||||
7 4
|
||||
7.5 4
|
||||
8 4
|
||||
8.5 4
|
||||
9 4
|
||||
9.5 4
|
||||
10 4
|
||||
10.5 4
|
||||
11 4
|
||||
11 3.5
|
||||
11 3
|
||||
10.5 3
|
||||
10 3
|
||||
9.5 3
|
||||
9.5 2.5
|
||||
10 2.5
|
||||
10.5 2.5
|
||||
10.5 2
|
||||
10.5 1.5
|
||||
10 1.5
|
||||
9.5 1.5
|
||||
9.5 1
|
||||
10 1
|
||||
10.5 1
|
||||
11 1
|
||||
11.5 1
|
||||
12 1
|
||||
12 1.5
|
||||
12 2
|
||||
12 2.5
|
||||
12 3
|
||||
12 3.5
|
||||
12 4
|
||||
12.5 4
|
||||
13 4
|
||||
13.333 3.75
|
||||
13.666 3.5
|
||||
14.000 3.25
|
||||
14.333 3.5
|
||||
14.666 3.75
|
||||
15.000 4
|
||||
15.500 4
|
||||
16.000 4
|
||||
16.000 3.5
|
||||
16.000 3
|
||||
16.000 2.5
|
||||
16.000 2
|
||||
16.000 1.5
|
||||
16.000 1
|
||||
16.000 0.5
|
||||
16.000 0
|
||||
15.500 0
|
||||
15.000 0
|
||||
15.000 0.5000000000000002
|
||||
15.000 1
|
||||
15.000 1.5
|
||||
15.000 2
|
||||
15.000 2.5
|
||||
15.000 3
|
||||
14.666 2.75
|
||||
14.333 2.5
|
||||
14.000 2.25
|
||||
13.666 2.5
|
||||
13.333 2.75
|
||||
13 3
|
||||
13 2.5
|
||||
13 2
|
||||
13 1.5
|
||||
13 1
|
||||
13 0.500
|
||||
13 0
|
||||
12.5 0
|
||||
12 0
|
||||
11.5 0
|
||||
11 0
|
||||
10.5 0
|
||||
10 0
|
||||
9.5 0
|
||||
9 0
|
||||
8.5 0
|
||||
8.5 0.5
|
||||
8.5 1
|
||||
8.5 1.5
|
||||
8.5 2
|
||||
8.5 2.5
|
||||
8.5 3
|
||||
8 3
|
||||
7.5 3
|
||||
7 3
|
||||
6.500 3
|
||||
6 3
|
||||
6 2.5
|
||||
6.5 2.5
|
||||
7 2.5
|
||||
7.5 2.5
|
||||
7.5 2
|
||||
7.5 1.5
|
||||
7.000 1.5
|
||||
6.5 1.5
|
||||
6 1.5
|
||||
6 1
|
||||
6 0.5
|
||||
6 0
|
||||
5.5 0
|
||||
5 0
|
||||
4.5 0
|
||||
4 0
|
||||
3.5 0
|
||||
3 0
|
||||
3 0.500
|
||||
3 1
|
||||
3 1.5
|
||||
3 2
|
||||
3 2.5
|
||||
3 3
|
||||
2.666 2.75
|
||||
2.333 2.5
|
||||
2.000 2.25
|
||||
1.666 2.5
|
||||
1.333 2.75
|
||||
1.000 3
|
||||
1.000 2.5
|
||||
1.000 2
|
||||
1.000 1.5
|
||||
1.000 1
|
||||
1.000 0.5000
|
||||
1.000 0
|
||||
0.5000 0
|
||||
0.0000 0
|
||||
0.0000 0.5
|
||||
0.0000 1
|
||||
0.0000 1.5
|
||||
0.0000 2
|
||||
0.0000 2.5
|
||||
0.0000 3
|
||||
0.0000 3.5
|
||||
0.0000 4
|
||||
0.5000 4
|
||||
1.000 4
|
||||
1.333 3.75
|
||||
1.666 3.5
|
||||
2.000 3.25
|
||||
2.333 3.5
|
||||
2.666 3.75
|
||||
3 4
|
||||
3.5 4
|
||||
3.5 3.5
|
||||
3 3.5
|
||||
3.5 3
|
||||
3.5 2.5
|
||||
3.5 2
|
||||
3.5 1.5
|
||||
3.5 1
|
||||
4 0.5
|
||||
3.5 0.5
|
||||
2.666 3.25
|
||||
2.333 3
|
||||
2.000 2.75
|
||||
4.5 0.5
|
||||
5 0.5
|
||||
1.666 3
|
||||
1.333 3.25
|
||||
1.000 3.5
|
||||
5.5 0.5
|
||||
5.500 1
|
||||
5.500 1.5
|
||||
5.500 2
|
||||
5.500 2.5
|
||||
5.500 3
|
||||
5.500 3.5
|
||||
6 2
|
||||
6 3.5
|
||||
6.5 2
|
||||
7 2
|
||||
6.5 3.5
|
||||
7 3.5
|
||||
7.5 3.5
|
||||
8 3.5
|
||||
8.5 3.5
|
||||
9 0.5
|
||||
9 1
|
||||
9 1.5
|
||||
9 2
|
||||
9 2.5
|
||||
9 3
|
||||
9 3.5
|
||||
9.5 0.5
|
||||
9.5 2
|
||||
9.5 3.5
|
||||
10 2
|
||||
10 0.5
|
||||
10.5 0.5
|
||||
11 0.5
|
||||
11.5 0.5
|
||||
12 0.5
|
||||
12.5 0.500
|
||||
12.5 1
|
||||
12.5 1.5
|
||||
12.5 2
|
||||
12.5 2.5
|
||||
12.5 3
|
||||
12.5 3.5
|
||||
13 3.5
|
||||
13.333 3.250
|
||||
13.666 3
|
||||
14.000 2.75
|
||||
10.5 3.5
|
||||
10 3.5
|
||||
0.500 3.5
|
||||
0.500 3
|
||||
0.500 2.5
|
||||
0.500 2
|
||||
0.500 1.5
|
||||
0.500 1
|
||||
0.500 0.5
|
||||
14.333 3
|
||||
14.666 3.25
|
||||
15.000 3.5
|
||||
15.500 3.5
|
||||
15.500 3
|
||||
15.500 2.5
|
||||
15.500 2
|
||||
15.500 1.5
|
||||
15.500 1
|
||||
15.500 0.5
|
||||
+35
-5
@@ -436,7 +436,7 @@ void NonlinearForm::Mult(const Vector &x, Vector &y) const
|
||||
// In parallel, the result is in 'py' which is an alias for 'aux2'.
|
||||
}
|
||||
|
||||
Operator &NonlinearForm::GetGradient(const Vector &x) const
|
||||
Operator &NonlinearForm::GetGradient(const Vector &x, bool finalize) const
|
||||
{
|
||||
if (ext)
|
||||
{
|
||||
@@ -644,6 +644,8 @@ Operator &NonlinearForm::GetGradient(const Vector &x) const
|
||||
}
|
||||
}
|
||||
|
||||
if (!finalize) { return *Grad; }
|
||||
|
||||
if (!Grad->Finalized())
|
||||
{
|
||||
Grad->Finalize(skip_zeros);
|
||||
@@ -1203,7 +1205,14 @@ const BlockVector &BlockNonlinearForm::Prolongate(const BlockVector &bx) const
|
||||
aux1.Update(block_offsets);
|
||||
for (int s = 0; s < fes.Size(); s++)
|
||||
{
|
||||
P[s]->Mult(bx.GetBlock(s), aux1.GetBlock(s));
|
||||
if (P[s])
|
||||
{
|
||||
P[s]->Mult(bx.GetBlock(s), aux1.GetBlock(s));
|
||||
}
|
||||
else
|
||||
{
|
||||
aux1.GetBlock(s) = bx.GetBlock(s);
|
||||
}
|
||||
}
|
||||
return aux1;
|
||||
}
|
||||
@@ -1232,11 +1241,16 @@ void BlockNonlinearForm::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
cP[s]->MultTranspose(pby.GetBlock(s), by.GetBlock(s));
|
||||
}
|
||||
else if (needs_prolongation)
|
||||
{
|
||||
by.GetBlock(s) = pby.GetBlock(s);
|
||||
}
|
||||
by.GetBlock(s).SetSubVector(*ess_tdofs[s], 0.0);
|
||||
}
|
||||
}
|
||||
|
||||
void BlockNonlinearForm::ComputeGradientBlocked(const BlockVector &bx) const
|
||||
void BlockNonlinearForm::ComputeGradientBlocked(const BlockVector &bx,
|
||||
bool finalize) const
|
||||
{
|
||||
const int skip_zeros = 0;
|
||||
Array<Array<int> *> vdofs(fes.Size());
|
||||
@@ -1490,7 +1504,7 @@ void BlockNonlinearForm::ComputeGradientBlocked(const BlockVector &bx) const
|
||||
}
|
||||
}
|
||||
|
||||
if (!Grads(0,0)->Finalized())
|
||||
if (finalize && !Grads(0,0)->Finalized())
|
||||
{
|
||||
for (int i=0; i<fes.Size(); ++i)
|
||||
{
|
||||
@@ -1529,7 +1543,23 @@ Operator &BlockNonlinearForm::GetGradient(const Vector &x) const
|
||||
for (int s2 = 0; s2 < fes.Size(); ++s2)
|
||||
{
|
||||
delete cGrads(s1, s2);
|
||||
cGrads(s1, s2) = RAP(*cP[s1], *Grads(s1, s2), *cP[s2]);
|
||||
if (cP[s1] && cP[s2])
|
||||
{
|
||||
cGrads(s1, s2) = RAP(*cP[s1], *Grads(s1, s2), *cP[s2]);
|
||||
}
|
||||
else if (cP[s1])
|
||||
{
|
||||
cGrads(s1, s2) = TransposeMult(*cP[s1], *Grads(s1, s2));
|
||||
}
|
||||
else if (cP[s2])
|
||||
{
|
||||
cGrads(s1, s2) = mfem::Mult(*Grads(s1, s2), *cP[s2]);
|
||||
}
|
||||
else
|
||||
{
|
||||
cGrads(s1, s2) = NULL;
|
||||
continue;
|
||||
}
|
||||
mGrads(s1, s2) = cGrads(s1, s2);
|
||||
}
|
||||
}
|
||||
|
||||
@@ -217,7 +217,12 @@ public:
|
||||
In general, @a x may have non-homogeneous essential boundary values.
|
||||
|
||||
The state @a x must be a true-dof vector. */
|
||||
Operator &GetGradient(const Vector &x) const override;
|
||||
Operator &GetGradient(const Vector &x) const override { return GetGradient(x, true); }
|
||||
|
||||
/** @brief Compute the gradient Operator of the NonlinearForm corresponding
|
||||
to the state @a x with optional finalization and elimintaion. */
|
||||
/** @see GetGradient(const Vector &) */
|
||||
Operator &GetGradient(const Vector &x, bool finalize) const;
|
||||
|
||||
/// Update the NonlinearForm to propagate updates of the associated FE space.
|
||||
/** After calling this method, the essential boundary conditions need to be
|
||||
@@ -308,7 +313,7 @@ protected:
|
||||
void MultBlocked(const BlockVector &bx, BlockVector &by) const;
|
||||
|
||||
/// Specialized version of GetGradient() for BlockVector
|
||||
void ComputeGradientBlocked(const BlockVector &bx) const;
|
||||
void ComputeGradientBlocked(const BlockVector &bx, bool finalize = true) const;
|
||||
|
||||
public:
|
||||
/// Construct an empty BlockNonlinearForm. Initialize with SetSpaces().
|
||||
|
||||
+251
-39
@@ -151,6 +151,15 @@ void ParBilinearForm::ParallelRAP(SparseMatrix &loc_A, OperatorHandle &A,
|
||||
}
|
||||
}
|
||||
|
||||
HypreParMatrix *ParBilinearForm::ParallelAssembleInternalMatrix()
|
||||
{
|
||||
if (p_mat.Ptr() == NULL)
|
||||
{
|
||||
ParallelAssemble(p_mat, mat);
|
||||
}
|
||||
return p_mat.As<HypreParMatrix>();
|
||||
}
|
||||
|
||||
void ParBilinearForm::ParallelAssemble(OperatorHandle &A, SparseMatrix *A_local)
|
||||
{
|
||||
A.Clear();
|
||||
@@ -333,6 +342,15 @@ void ParBilinearForm
|
||||
A.EliminateRowsCols(dof_list, X, B);
|
||||
}
|
||||
|
||||
void ParBilinearForm::ParallelEliminateEssentialBC(
|
||||
const Array<int> &bdr_attr_is_ess, const HypreParVector &X, HypreParVector &B)
|
||||
{
|
||||
Array<int> dof_list;
|
||||
pfes->GetEssentialTrueDofs(bdr_attr_is_ess, dof_list);
|
||||
|
||||
p_mat.As<HypreParMatrix>()->EliminateRowsCols(dof_list, X, B);
|
||||
}
|
||||
|
||||
HypreParMatrix *ParBilinearForm::
|
||||
ParallelEliminateEssentialBC(const Array<int> &bdr_attr_is_ess,
|
||||
HypreParMatrix &A) const
|
||||
@@ -344,6 +362,26 @@ ParallelEliminateEssentialBC(const Array<int> &bdr_attr_is_ess,
|
||||
return A.EliminateRowsCols(dof_list);
|
||||
}
|
||||
|
||||
void ParBilinearForm::ParallelEliminateEssentialBC(const Array<int>
|
||||
&bdr_attr_is_ess)
|
||||
{
|
||||
Array<int> tdofs_list;
|
||||
pfes->GetEssentialTrueDofs(bdr_attr_is_ess, tdofs_list);
|
||||
|
||||
ParallelEliminateTDofs(tdofs_list);
|
||||
}
|
||||
|
||||
void ParBilinearForm::ParallelEliminateTDofs(const Array<int> &tdofs_list)
|
||||
{
|
||||
p_mat_e.EliminateRowsCols(p_mat, tdofs_list);
|
||||
}
|
||||
|
||||
void ParBilinearForm::ParallelEliminateTDofsInRHS(
|
||||
const Array<int> &tdofs_list, const Vector &x, Vector &b)
|
||||
{
|
||||
p_mat.EliminateBC(p_mat_e, tdofs_list, x, b);
|
||||
}
|
||||
|
||||
void ParBilinearForm::TrueAddMult(const Vector &x, Vector &y, const real_t a)
|
||||
const
|
||||
{
|
||||
@@ -485,7 +523,7 @@ void ParBilinearForm::FormLinearSystem(
|
||||
HypreParVector true_X(pfes), true_B(pfes);
|
||||
P.MultTranspose(b, true_B);
|
||||
R.Mult(x, true_X);
|
||||
p_mat.EliminateBC(p_mat_e, ess_tdof_list, true_X, true_B);
|
||||
ParallelEliminateTDofsInRHS(ess_tdof_list, true_X, true_B);
|
||||
R.MultTranspose(true_B, b);
|
||||
hybridization->ReduceRHS(true_B, B);
|
||||
X.SetSize(B.Size());
|
||||
@@ -498,17 +536,11 @@ void ParBilinearForm::FormLinearSystem(
|
||||
B.SetSize(X.Size());
|
||||
P.MultTranspose(b, B);
|
||||
R.Mult(x, X);
|
||||
p_mat.EliminateBC(p_mat_e, ess_tdof_list, X, B);
|
||||
ParallelEliminateTDofsInRHS(ess_tdof_list, X, B);
|
||||
if (!copy_interior) { X.SetSubVectorComplement(ess_tdof_list, 0.0); }
|
||||
}
|
||||
}
|
||||
|
||||
void ParBilinearForm::EliminateVDofsInRHS(
|
||||
const Array<int> &vdofs, const Vector &x, Vector &b)
|
||||
{
|
||||
p_mat.EliminateBC(p_mat_e, vdofs, x, b);
|
||||
}
|
||||
|
||||
void ParBilinearForm::FormSystemMatrix(const Array<int> &ess_tdof_list,
|
||||
OperatorHandle &A)
|
||||
{
|
||||
@@ -553,7 +585,7 @@ void ParBilinearForm::FormSystemMatrix(const Array<int> &ess_tdof_list,
|
||||
mat = NULL;
|
||||
delete mat_e;
|
||||
mat_e = NULL;
|
||||
p_mat_e.EliminateRowsCols(p_mat, ess_tdof_list);
|
||||
ParallelEliminateTDofs(ess_tdof_list);
|
||||
}
|
||||
if (hybridization)
|
||||
{
|
||||
@@ -615,36 +647,180 @@ void ParBilinearForm::Update(FiniteElementSpace *nfes)
|
||||
p_mat_e.Clear();
|
||||
}
|
||||
|
||||
|
||||
HypreParMatrix *ParMixedBilinearForm::ParallelAssemble()
|
||||
void ParMixedBilinearForm::pAllocMat()
|
||||
{
|
||||
// construct the block-diagonal matrix A
|
||||
HypreParMatrix *A =
|
||||
new HypreParMatrix(trial_pfes->GetComm(),
|
||||
test_pfes->GlobalVSize(),
|
||||
trial_pfes->GlobalVSize(),
|
||||
test_pfes->GetDofOffsets(),
|
||||
trial_pfes->GetDofOffsets(),
|
||||
mat);
|
||||
const int trial_nbr_size = trial_pfes->GetFaceNbrVSize();
|
||||
const int test_nbr_size = test_pfes->GetFaceNbrVSize();
|
||||
|
||||
HypreParMatrix *rap = RAP(test_pfes->Dof_TrueDof_Matrix(), A,
|
||||
trial_pfes->Dof_TrueDof_Matrix());
|
||||
|
||||
delete A;
|
||||
|
||||
return rap;
|
||||
if (keep_nbr_block)
|
||||
{
|
||||
mat = new SparseMatrix(height + test_nbr_size, width + trial_nbr_size);
|
||||
}
|
||||
else
|
||||
{
|
||||
mat = new SparseMatrix(height, width + trial_nbr_size);
|
||||
}
|
||||
}
|
||||
|
||||
void ParMixedBilinearForm::ParallelAssemble(OperatorHandle &A)
|
||||
void ParMixedBilinearForm::AssembleSharedFaces(int skip_zeros)
|
||||
{
|
||||
// construct the rectangular block-diagonal matrix dA
|
||||
OperatorHandle dA(A.Type());
|
||||
dA.MakeRectangularBlockDiag(trial_pfes->GetComm(),
|
||||
test_pfes->GlobalVSize(),
|
||||
trial_pfes->GlobalVSize(),
|
||||
test_pfes->GetDofOffsets(),
|
||||
trial_pfes->GetDofOffsets(),
|
||||
mat);
|
||||
ParMesh *pmesh = trial_pfes->GetParMesh();
|
||||
FaceElementTransformations *T;
|
||||
Array<int> tr_vdofs1, tr_vdofs2, tr_vdofs_all;
|
||||
Array<int> te_vdofs1, te_vdofs2, te_vdofs_all;
|
||||
DenseMatrix elemmat;
|
||||
|
||||
int nfaces = pmesh->GetNSharedFaces();
|
||||
for (int i = 0; i < nfaces; i++)
|
||||
{
|
||||
T = pmesh->GetSharedFaceTransformations(i);
|
||||
int Elem2NbrNo = T->Elem2No - pmesh->GetNE();
|
||||
trial_pfes->GetElementVDofs(T->Elem1No, tr_vdofs1);
|
||||
test_pfes->GetElementVDofs(T->Elem1No, te_vdofs1);
|
||||
trial_pfes->GetFaceNbrElementVDofs(Elem2NbrNo, tr_vdofs2);
|
||||
test_pfes->GetFaceNbrElementVDofs(Elem2NbrNo, te_vdofs2);
|
||||
|
||||
tr_vdofs1.Copy(tr_vdofs_all);
|
||||
for (int j = 0; j < tr_vdofs2.Size(); j++)
|
||||
{
|
||||
if (tr_vdofs2[j] >= 0)
|
||||
{
|
||||
tr_vdofs2[j] += width;
|
||||
}
|
||||
else
|
||||
{
|
||||
tr_vdofs2[j] -= width;
|
||||
}
|
||||
}
|
||||
tr_vdofs_all.Append(tr_vdofs2);
|
||||
|
||||
if (keep_nbr_block)
|
||||
{
|
||||
te_vdofs1.Copy(te_vdofs_all);
|
||||
for (int j = 0; j < te_vdofs2.Size(); j++)
|
||||
{
|
||||
if (te_vdofs2[j] >= 0)
|
||||
{
|
||||
te_vdofs2[j] += height;
|
||||
}
|
||||
else
|
||||
{
|
||||
te_vdofs2[j] -= height;
|
||||
}
|
||||
}
|
||||
te_vdofs_all.Append(te_vdofs2);
|
||||
}
|
||||
|
||||
for (int k = 0; k < interior_face_integs.Size(); k++)
|
||||
{
|
||||
interior_face_integs[k]->
|
||||
AssembleFaceMatrix(*trial_pfes->GetFE(T->Elem1No),
|
||||
*test_pfes->GetFE(T->Elem1No),
|
||||
*trial_pfes->GetFaceNbrFE(Elem2NbrNo),
|
||||
*test_pfes->GetFaceNbrFE(Elem2NbrNo),
|
||||
*T, elemmat);
|
||||
if (keep_nbr_block)
|
||||
{
|
||||
mat->AddSubMatrix(te_vdofs_all, tr_vdofs_all, elemmat, skip_zeros);
|
||||
}
|
||||
else
|
||||
{
|
||||
mat->AddSubMatrix(te_vdofs1, tr_vdofs_all, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void ParMixedBilinearForm::Assemble(int skip_zeros)
|
||||
{
|
||||
if (interior_face_integs.Size())
|
||||
{
|
||||
trial_pfes->ExchangeFaceNbrData();
|
||||
test_pfes->ExchangeFaceNbrData();
|
||||
if (!ext && mat == NULL)
|
||||
{
|
||||
pAllocMat();
|
||||
}
|
||||
}
|
||||
|
||||
MixedBilinearForm::Assemble(skip_zeros);
|
||||
|
||||
if (!ext && interior_face_integs.Size() > 0)
|
||||
{
|
||||
AssembleSharedFaces(skip_zeros);
|
||||
}
|
||||
}
|
||||
|
||||
HypreParMatrix *ParMixedBilinearForm::ParallelAssembleInternalMatrix()
|
||||
{
|
||||
if (p_mat.Ptr() == NULL)
|
||||
{
|
||||
ParallelAssemble(p_mat, mat);
|
||||
}
|
||||
return p_mat.As<HypreParMatrix>();
|
||||
}
|
||||
|
||||
HypreParMatrix *ParMixedBilinearForm::ParallelAssemble(SparseMatrix *m)
|
||||
{
|
||||
OperatorHandle Mh(Operator::Hypre_ParCSR);
|
||||
ParallelAssemble(Mh, m);
|
||||
Mh.SetOperatorOwner(false);
|
||||
return Mh.As<HypreParMatrix>();
|
||||
}
|
||||
|
||||
void ParMixedBilinearForm::ParallelAssemble(OperatorHandle &A,
|
||||
SparseMatrix *A_local)
|
||||
{
|
||||
A.Clear();
|
||||
|
||||
if (A_local == NULL) { return; }
|
||||
MFEM_VERIFY(A_local->Finalized(), "the local matrix must be finalized");
|
||||
|
||||
OperatorHandle dA(A.Type()), hdA;
|
||||
|
||||
if (interior_face_integs.Size() == 0)
|
||||
{
|
||||
// construct the rectangular block-diagonal matrix dA
|
||||
dA.MakeRectangularBlockDiag(trial_pfes->GetComm(),
|
||||
test_pfes->GlobalVSize(),
|
||||
trial_pfes->GlobalVSize(),
|
||||
test_pfes->GetDofOffsets(),
|
||||
trial_pfes->GetDofOffsets(),
|
||||
A_local);
|
||||
}
|
||||
else
|
||||
{
|
||||
// handle the case when 'a' contains off-diagonal
|
||||
const int lvrows = test_pfes->GetVSize();
|
||||
const int lvcols = trial_pfes->GetVSize();
|
||||
const HYPRE_BigInt *face_nbr_glob_lcol = trial_pfes->GetFaceNbrGlobalDofMap();
|
||||
const HYPRE_BigInt lcol_offset = trial_pfes->GetMyDofOffset();
|
||||
|
||||
Array<HYPRE_BigInt> glob_J(A_local->NumNonZeroElems());
|
||||
const int *J = A_local->GetJ();
|
||||
for (int i = 0; i < glob_J.Size(); i++)
|
||||
{
|
||||
if (J[i] < lvcols)
|
||||
{
|
||||
glob_J[i] = J[i] + lcol_offset;
|
||||
}
|
||||
else
|
||||
{
|
||||
glob_J[i] = face_nbr_glob_lcol[J[i] - lvcols];
|
||||
}
|
||||
}
|
||||
|
||||
// TODO - construct dA directly in the A format
|
||||
hdA.Reset(
|
||||
new HypreParMatrix(trial_pfes->GetComm(), lvrows, test_pfes->GlobalVSize(),
|
||||
trial_pfes->GlobalVSize(), A_local->GetI(), glob_J,
|
||||
A_local->GetData(), test_pfes->GetDofOffsets(),
|
||||
trial_pfes->GetDofOffsets()));
|
||||
// - hdA owns the new HypreParMatrix
|
||||
// - the above constructor copies all input arrays
|
||||
glob_J.DeleteAll();
|
||||
dA.ConvertFrom(hdA);
|
||||
}
|
||||
|
||||
OperatorHandle P_test(A.Type()), P_trial(A.Type());
|
||||
|
||||
@@ -670,6 +846,44 @@ void ParMixedBilinearForm::TrueAddMult(const Vector &x, Vector &y,
|
||||
test_pfes->Dof_TrueDof_Matrix()->MultTranspose(a, Yaux, 1.0, y);
|
||||
}
|
||||
|
||||
void ParMixedBilinearForm::ParallelEliminateTrialEssentialBC(
|
||||
const Array<int> &bdr_attr_is_ess)
|
||||
{
|
||||
Array<int> trial_tdof_list;
|
||||
trial_pfes->GetEssentialTrueDofs(bdr_attr_is_ess, trial_tdof_list);
|
||||
|
||||
ParallelEliminateTrialTDofs(trial_tdof_list);
|
||||
}
|
||||
|
||||
void ParMixedBilinearForm::ParallelEliminateTrialTDofs(
|
||||
const Array<int> &trial_tdof_list)
|
||||
{
|
||||
HypreParMatrix *temp = p_mat.As<HypreParMatrix>()->EliminateCols(
|
||||
trial_tdof_list);
|
||||
p_mat_e.Reset(temp, true);
|
||||
}
|
||||
|
||||
void ParMixedBilinearForm::ParallelEliminateTrialTDofsInRHS(
|
||||
const Array<int> &trial_tdof_list, const Vector &x, Vector &b)
|
||||
{
|
||||
p_mat_e.As<HypreParMatrix>()->Mult(-1.0, x, 1.0, b);
|
||||
}
|
||||
|
||||
void ParMixedBilinearForm::ParallelEliminateTestEssentialBC(
|
||||
const Array<int> &bdr_attr_is_ess)
|
||||
{
|
||||
Array<int> test_tdof_list;
|
||||
test_pfes->GetEssentialTrueDofs(bdr_attr_is_ess, test_tdof_list);
|
||||
|
||||
ParallelEliminateTestTDofs(test_tdof_list);
|
||||
}
|
||||
|
||||
void ParMixedBilinearForm::ParallelEliminateTestTDofs(
|
||||
const Array<int> &test_tdof_list)
|
||||
{
|
||||
p_mat.As<HypreParMatrix>()->EliminateRows(test_tdof_list);
|
||||
}
|
||||
|
||||
void ParMixedBilinearForm::FormRectangularSystemMatrix(
|
||||
const Array<int>
|
||||
&trial_tdof_list,
|
||||
@@ -690,10 +904,8 @@ void ParMixedBilinearForm::FormRectangularSystemMatrix(
|
||||
mat = NULL;
|
||||
delete mat_e;
|
||||
mat_e = NULL;
|
||||
HypreParMatrix *temp =
|
||||
p_mat.As<HypreParMatrix>()->EliminateCols(trial_tdof_list);
|
||||
p_mat.As<HypreParMatrix>()->EliminateRows(test_tdof_list);
|
||||
p_mat_e.Reset(temp, true);
|
||||
ParallelEliminateTrialTDofs(trial_tdof_list);
|
||||
ParallelEliminateTestTDofs(test_tdof_list);
|
||||
}
|
||||
|
||||
A = p_mat;
|
||||
@@ -723,7 +935,7 @@ void ParMixedBilinearForm::FormRectangularLinearSystem(
|
||||
test_P->MultTranspose(b, B);
|
||||
trial_R->Mult(x, X);
|
||||
|
||||
p_mat_e.As<HypreParMatrix>()->Mult(-1.0, X, 1.0, B);
|
||||
ParallelEliminateTrialTDofsInRHS(trial_tdof_list, X, B);
|
||||
B.SetSubVector(test_tdof_list, 0.0);
|
||||
}
|
||||
|
||||
|
||||
+128
-5
@@ -73,7 +73,7 @@ public:
|
||||
/** When set to true and the ParBilinearForm has interior face integrators,
|
||||
the local SparseMatrix will include the rows (in addition to the columns)
|
||||
corresponding to face-neighbor dofs. The default behavior is to disregard
|
||||
those rows. Must be called before the first Assemble call. */
|
||||
those rows. Must be called before the first Assemble() call. */
|
||||
void KeepNbrBlock(bool knb = true) { keep_nbr_block = knb; }
|
||||
|
||||
/** @brief Set the operator type id for the parallel matrix/operator when
|
||||
@@ -101,6 +101,14 @@ public:
|
||||
diagonal for this case. */
|
||||
void AssembleDiagonal(Vector &diag) const override;
|
||||
|
||||
/// Returns the matrix assembled on the true dofs, i.e. P^t A P.
|
||||
/** The returned matrix is the internal one, owned by the form. It is not
|
||||
reassembled if it has been already constructed. If FormSystemMatrix()
|
||||
has been called before, it is the system matrix with eliminated
|
||||
essential DOFs, otherwise the parallel matrix is assembled here without
|
||||
the elimination process. */
|
||||
HypreParMatrix *ParallelAssembleInternalMatrix();
|
||||
|
||||
/// Returns the matrix assembled on the true dofs, i.e. P^t A P.
|
||||
/** The returned matrix has to be deleted by the caller. */
|
||||
HypreParMatrix *ParallelAssemble() { return ParallelAssemble(mat); }
|
||||
@@ -146,6 +154,13 @@ public:
|
||||
const HypreParVector &X,
|
||||
HypreParVector &B) const;
|
||||
|
||||
/// Eliminate essential boundary DOFs from the parallel system matrix.
|
||||
/** The array @a bdr_attr_is_ess marks boundary attributes that constitute
|
||||
the essential part of the boundary. */
|
||||
void ParallelEliminateEssentialBC(const Array<int> &bdr_attr_is_ess,
|
||||
const HypreParVector &X,
|
||||
HypreParVector &B);
|
||||
|
||||
/// Eliminate essential boundary DOFs from a parallel assembled matrix @a A.
|
||||
/** The array @a bdr_attr_is_ess marks boundary attributes that constitute
|
||||
the essential part of the boundary. The eliminated part is stored in a
|
||||
@@ -157,6 +172,12 @@ public:
|
||||
HypreParMatrix *ParallelEliminateEssentialBC(const Array<int> &bdr_attr_is_ess,
|
||||
HypreParMatrix &A) const;
|
||||
|
||||
/// Eliminate essential boundary DOFs from the parallel system matrix.
|
||||
/** The array @a bdr_attr_is_ess marks boundary attributes that constitute
|
||||
the essential part of the boundary. This method relies on
|
||||
ParallelEliminateTDofs(const Array<int> &), see it for details. */
|
||||
void ParallelEliminateEssentialBC(const Array<int> &bdr_attr_is_ess);
|
||||
|
||||
/// Eliminate essential true DOFs from a parallel assembled matrix @a A.
|
||||
/** Given a list of essential true dofs and the parallel assembled matrix
|
||||
@a A, eliminate the true dofs from the matrix, storing the eliminated
|
||||
@@ -169,6 +190,28 @@ public:
|
||||
HypreParMatrix &A) const
|
||||
{ return A.EliminateRowsCols(tdofs_list); }
|
||||
|
||||
/// Eliminate essential true DOFs from the parallel system matrix.
|
||||
/** Given a list of essential true dofs, eliminate the true dofs from
|
||||
the parallel assembled system matrix, storing the eliminated part
|
||||
internally. This method works in conjunction with
|
||||
ParallelEliminateTDofsInRHS() and allows elimination of boundary
|
||||
conditions in multiple right-hand sides. */
|
||||
void ParallelEliminateTDofs(const Array<int> &tdofs_list);
|
||||
|
||||
/** @brief Use the stored eliminated part of the parallel system matrix for
|
||||
elimination of boundary conditions in the r.h.s. */
|
||||
/** Given a list of essential true dofs, eliminate the true dofs from the
|
||||
right-hand side @a b using the solution vector @a x and the previously
|
||||
stored eliminated part of the parallel assembled system matrix produced
|
||||
by ParallelEliminateTDofs(const Array<int> &). */
|
||||
void ParallelEliminateTDofsInRHS(const Array<int> &tdofs, const Vector &x,
|
||||
Vector &b);
|
||||
|
||||
/// @deprecated Use ParallelEliminateTDofsInRHS() instead.
|
||||
MFEM_DEPRECATED void EliminateVDofsInRHS(const Array<int> &vdofs,
|
||||
const Vector &x, Vector &b)
|
||||
{ ParallelEliminateTDofsInRHS(vdofs, x, b); }
|
||||
|
||||
/** @brief Compute @a y += @a a (P^t A P) @a x, where @a x and @a y are
|
||||
vectors on the true dofs. */
|
||||
void TrueAddMult(const Vector &x, Vector &y, const real_t a = 1.0) const;
|
||||
@@ -238,8 +281,6 @@ public:
|
||||
|
||||
void Update(FiniteElementSpace *nfes = NULL) override;
|
||||
|
||||
void EliminateVDofsInRHS(const Array<int> &vdofs, const Vector &x, Vector &b);
|
||||
|
||||
virtual ~ParBilinearForm() { }
|
||||
};
|
||||
|
||||
@@ -257,6 +298,13 @@ protected:
|
||||
/// Matrix and eliminated matrix
|
||||
OperatorHandle p_mat, p_mat_e;
|
||||
|
||||
bool keep_nbr_block;
|
||||
|
||||
// Allocate mat - called when (mat == NULL && fbfi.Size() > 0)
|
||||
void pAllocMat();
|
||||
|
||||
void AssembleSharedFaces(int skip_zeros = 1);
|
||||
|
||||
private:
|
||||
/// Copy construction is not supported; body is undefined.
|
||||
ParMixedBilinearForm(const ParMixedBilinearForm &);
|
||||
@@ -276,6 +324,7 @@ public:
|
||||
{
|
||||
trial_pfes = trial_fes;
|
||||
test_pfes = test_fes;
|
||||
keep_nbr_block = false;
|
||||
}
|
||||
|
||||
/** @brief Create a ParMixedBilinearForm on the given FiniteElementSpace%s
|
||||
@@ -295,15 +344,89 @@ public:
|
||||
{
|
||||
trial_pfes = trial_fes;
|
||||
test_pfes = test_fes;
|
||||
keep_nbr_block = false;
|
||||
}
|
||||
|
||||
/** When set to true and the ParMixedBilinearForm has interior face
|
||||
integrators, the local SparseMatrix will include the rows (in addition
|
||||
to the columns) corresponding to face-neighbor dofs. The default
|
||||
behavior is to disregard those rows. Must be called before the first
|
||||
Assemble() call. */
|
||||
void KeepNbrBlock(bool knb = true) { keep_nbr_block = knb; }
|
||||
|
||||
/// Assemble the local matrix
|
||||
void Assemble(int skip_zeros = 1);
|
||||
|
||||
/// Returns the matrix assembled on the true dofs, i.e. P_test^t A P_trial.
|
||||
HypreParMatrix *ParallelAssemble();
|
||||
/** The returned matrix is the internal one, owned by the form. It is not
|
||||
reassembled if it has been already constructed. If
|
||||
FormRectangularSystemMatrix() has been called before, it is the system
|
||||
matrix with eliminated essential DOFs, otherwise the parallel matrix is
|
||||
assembled here without the elimination process. */
|
||||
HypreParMatrix *ParallelAssembleInternalMatrix();
|
||||
|
||||
/// Returns the matrix assembled on the true dofs, i.e. P_test^t A P_trial.
|
||||
/** The returned matrix has to be deleted by the caller. */
|
||||
HypreParMatrix *ParallelAssemble() { return ParallelAssemble(mat); }
|
||||
|
||||
/** @brief Returns the eliminated matrix assembled on the true dofs, i.e.
|
||||
P_test^t A_local P_trial. */
|
||||
/** The returned matrix has to be deleted by the caller. */
|
||||
HypreParMatrix *ParallelAssembleElim() { return ParallelAssemble(mat_e); }
|
||||
|
||||
/** @brief Return the matrix @a m assembled on the true dofs, i.e. P_test^t
|
||||
A_local P_trial. */
|
||||
/** The returned matrix has to be deleted by the caller. */
|
||||
HypreParMatrix *ParallelAssemble(SparseMatrix *m);
|
||||
|
||||
/** @brief Returns the matrix assembled on the true dofs, i.e.
|
||||
@a A = P_test^t A_local P_trial, in the format (type id) specified by
|
||||
@a A. */
|
||||
void ParallelAssemble(OperatorHandle &A);
|
||||
void ParallelAssemble(OperatorHandle &A) { ParallelAssemble(A, mat); }
|
||||
|
||||
/** Returns the eliminated matrix assembled on the true dofs, i.e.
|
||||
@a A_elim = P^t A_elim_local P in the format (type id) specified by @a A.
|
||||
*/
|
||||
void ParallelAssembleElim(OperatorHandle &A_elim)
|
||||
{ ParallelAssemble(A_elim, mat_e); }
|
||||
|
||||
/** Returns the matrix @a A_local assembled on the true dofs, i.e.
|
||||
@a A = P_test^t A_local P_trial in the format (type id) specified by
|
||||
@a A. */
|
||||
void ParallelAssemble(OperatorHandle &A, SparseMatrix *A_local);
|
||||
|
||||
/// Eliminate essential boundary trial DOFs from the parallel system matrix.
|
||||
/** The array @a bdr_attr_is_ess marks boundary attributes that constitute
|
||||
the essential part of the boundary. This method relies on
|
||||
ParallelEliminateTrialTDofs(const Array<int> &), see it for details. */
|
||||
void ParallelEliminateTrialEssentialBC(const Array<int> &bdr_attr_is_ess);
|
||||
|
||||
/// Eliminate essential trial true DOFs from the parallel system matrix.
|
||||
/** Given a list of essential trial true dofs, eliminate the trial true dofs
|
||||
from the parallel assembled system matrix, storing the eliminated part
|
||||
internally. This method works in conjunction with
|
||||
ParallelEliminateTrialTDofsInRHS() and allows elimination of boundary
|
||||
conditions in multiple right-hand sides. */
|
||||
void ParallelEliminateTrialTDofs(const Array<int> &trial_tdof_list);
|
||||
|
||||
/** @brief Use the stored eliminated part of the parallel system matrix for
|
||||
elimination of boundary conditions in the r.h.s. */
|
||||
/** Given a list of essential trial true dofs, eliminate the trial true dofs
|
||||
from the right-hand side @a B using the solution vector @a X and the
|
||||
previously stored eliminated part of the parallel assembled system
|
||||
matrix produced by ParallelEliminateTrialTDofs(const Array<int> &). */
|
||||
void ParallelEliminateTrialTDofsInRHS(const Array<int> &trial_tdof_list,
|
||||
const Vector &X, Vector &B);
|
||||
|
||||
/// Eliminate essential boundary test DOFs from the parallel system matrix.
|
||||
/** The array @a bdr_attr_is_ess marks boundary attributes that constitute
|
||||
the essential part of the boundary. */
|
||||
void ParallelEliminateTestEssentialBC(const Array<int> &bdr_attr_is_ess);
|
||||
|
||||
/// Eliminate essential test true DOFs from the parallel system matrix.
|
||||
/** Given a list of essential test true dofs, eliminate the test true dofs
|
||||
from the parallel assembled system matrix. */
|
||||
void ParallelEliminateTestTDofs(const Array<int> &test_tdof_list);
|
||||
|
||||
using MixedBilinearForm::FormRectangularSystemMatrix;
|
||||
using MixedBilinearForm::FormRectangularLinearSystem;
|
||||
|
||||
+405
-41
@@ -105,6 +105,59 @@ const SparseMatrix &ParNonlinearForm::GetLocalGradient(const Vector &x) const
|
||||
return *Grad;
|
||||
}
|
||||
|
||||
void ParNonlinearForm::GradientSharedFaces(const Vector &x,
|
||||
int skip_zeros) const
|
||||
{
|
||||
ParFiniteElementSpace *pfes = ParFESpace();
|
||||
ParMesh *pmesh = pfes->GetParMesh();
|
||||
FaceElementTransformations *T;
|
||||
Array<int> vdofs1, vdofs2, vdofs_all;
|
||||
DenseMatrix elemmat;
|
||||
Vector el_x, nbr_x, face_x;
|
||||
const Vector &px = Prolongate(x);
|
||||
|
||||
ParGridFunction pgf(pfes, const_cast<Vector&>(px), 0);
|
||||
pgf.ExchangeFaceNbrData();
|
||||
|
||||
int nfaces = pmesh->GetNSharedFaces();
|
||||
for (int i = 0; i < nfaces; i++)
|
||||
{
|
||||
T = pmesh->GetSharedFaceTransformations(i);
|
||||
int Elem2NbrNo = T->Elem2No - pmesh->GetNE();
|
||||
|
||||
pfes->GetElementVDofs(T->Elem1No, vdofs1);
|
||||
pfes->GetFaceNbrElementVDofs(Elem2NbrNo, vdofs2);
|
||||
face_x.SetSize(vdofs1.Size() + vdofs2.Size());
|
||||
|
||||
el_x.MakeRef(face_x, 0, vdofs1.Size());
|
||||
pgf.GetSubVector(vdofs1, el_x);
|
||||
|
||||
nbr_x.MakeRef(face_x, vdofs1.Size(), vdofs2.Size());
|
||||
pgf.FaceNbrData().GetSubVector(vdofs2, nbr_x);
|
||||
|
||||
vdofs1.Copy(vdofs_all);
|
||||
for (int j = 0; j < vdofs2.Size(); j++)
|
||||
{
|
||||
if (vdofs2[j] >= 0)
|
||||
{
|
||||
vdofs2[j] += height;
|
||||
}
|
||||
else
|
||||
{
|
||||
vdofs2[j] -= height;
|
||||
}
|
||||
}
|
||||
vdofs_all.Append(vdofs2);
|
||||
for (int k = 0; k < fnfi.Size(); k++)
|
||||
{
|
||||
fnfi[k]->AssembleFaceGrad(*pfes->GetFE(T->Elem1No),
|
||||
*pfes->GetFaceNbrFE(Elem2NbrNo),
|
||||
*T, face_x, elemmat);
|
||||
Grad->AddSubMatrix(vdofs1, vdofs_all, elemmat, skip_zeros);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
Operator &ParNonlinearForm::GetGradient(const Vector &x) const
|
||||
{
|
||||
if (NonlinearForm::ext) { return NonlinearForm::GetGradient(x); }
|
||||
@@ -112,19 +165,61 @@ Operator &ParNonlinearForm::GetGradient(const Vector &x) const
|
||||
ParFiniteElementSpace *pfes = ParFESpace();
|
||||
|
||||
pGrad.Clear();
|
||||
OperatorHandle dA(pGrad.Type()), Ph(pGrad.Type()), hdA;
|
||||
|
||||
NonlinearForm::GetGradient(x); // (re)assemble Grad, no b.c.
|
||||
|
||||
OperatorHandle dA(pGrad.Type()), Ph(pGrad.Type());
|
||||
|
||||
if (fnfi.Size() == 0)
|
||||
if (fnfi.Size())
|
||||
{
|
||||
dA.MakeSquareBlockDiag(pfes->GetComm(), pfes->GlobalVSize(),
|
||||
pfes->GetDofOffsets(), Grad);
|
||||
const int skip_zeros = 0;
|
||||
|
||||
pfes->ExchangeFaceNbrData();
|
||||
if (Grad == NULL)
|
||||
{
|
||||
int nbr_size = pfes->GetFaceNbrVSize();
|
||||
Grad = new SparseMatrix(pfes->GetVSize(), pfes->GetVSize() + nbr_size);
|
||||
}
|
||||
|
||||
NonlinearForm::GetGradient(x, false); // (re)assemble Grad, no b.c.
|
||||
|
||||
GradientSharedFaces(x, skip_zeros);
|
||||
|
||||
Grad->Finalize(skip_zeros);
|
||||
|
||||
// handle the case when 'a' contains off-diagonal
|
||||
int lvsize = pfes->GetVSize();
|
||||
const HYPRE_BigInt *face_nbr_glob_ldof = pfes->GetFaceNbrGlobalDofMap();
|
||||
HYPRE_BigInt ldof_offset = pfes->GetMyDofOffset();
|
||||
|
||||
Array<HYPRE_BigInt> glob_J(Grad->NumNonZeroElems());
|
||||
int *J = Grad->GetJ();
|
||||
for (int i = 0; i < glob_J.Size(); i++)
|
||||
{
|
||||
if (J[i] < lvsize)
|
||||
{
|
||||
glob_J[i] = J[i] + ldof_offset;
|
||||
}
|
||||
else
|
||||
{
|
||||
glob_J[i] = face_nbr_glob_ldof[J[i] - lvsize];
|
||||
}
|
||||
}
|
||||
|
||||
// TODO - construct dA directly in the A format
|
||||
hdA.Reset(
|
||||
new HypreParMatrix(pfes->GetComm(), lvsize, pfes->GlobalVSize(),
|
||||
pfes->GlobalVSize(), Grad->GetI(), glob_J,
|
||||
Grad->GetData(), pfes->GetDofOffsets(),
|
||||
pfes->GetDofOffsets()));
|
||||
// - hdA owns the new HypreParMatrix
|
||||
// - the above constructor copies all input arrays
|
||||
glob_J.DeleteAll();
|
||||
dA.ConvertFrom(hdA);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("TODO: assemble contributions from shared face terms");
|
||||
NonlinearForm::GetGradient(x); // (re)assemble Grad, no b.c.
|
||||
|
||||
dA.MakeSquareBlockDiag(pfes->GetComm(), pfes->GlobalVSize(),
|
||||
pfes->GetDofOffsets(), Grad);
|
||||
}
|
||||
|
||||
// RAP the local gradient dA.
|
||||
@@ -271,7 +366,70 @@ void ParBlockNonlinearForm::Mult(const Vector &x, Vector &y) const
|
||||
|
||||
if (fnfi.Size() > 0)
|
||||
{
|
||||
MFEM_ABORT("TODO: assemble contributions from shared face terms");
|
||||
// Terms over shared interior faces in parallel.
|
||||
ParMesh *pmesh = ParFESpace(0)->GetParMesh();
|
||||
FaceElementTransformations *tr;
|
||||
|
||||
Array<Array<int> *>vdofs(fes.Size());
|
||||
Array<Array<int> *>vdofs2(fes.Size());
|
||||
Array<Vector *> el_x(fes.Size());
|
||||
Array<const Vector *> el_x_const(fes.Size());
|
||||
Array<Vector *> el_y(fes.Size());
|
||||
Array<const FiniteElement *> fe(fes.Size());
|
||||
Array<const FiniteElement *> fe2(fes.Size());
|
||||
Array<ParGridFunction *> pgfs(fes.Size());
|
||||
for (int s=0; s<fes.Size(); ++s)
|
||||
{
|
||||
el_x_const[s] = el_x[s] = new Vector();
|
||||
el_y[s] = new Vector();
|
||||
vdofs[s] = new Array<int>;
|
||||
vdofs2[s] = new Array<int>;
|
||||
pgfs[s] = new ParGridFunction(const_cast<ParFiniteElementSpace*>(ParFESpace(s)),
|
||||
xs.GetBlock(s));
|
||||
pgfs[s]->ExchangeFaceNbrData();
|
||||
}
|
||||
|
||||
const int n_shared_faces = pmesh->GetNSharedFaces();
|
||||
for (int i = 0; i < n_shared_faces; i++)
|
||||
{
|
||||
tr = pmesh->GetSharedFaceTransformations(i, true);
|
||||
int Elem2NbrNo = tr->Elem2No - pmesh->GetNE();
|
||||
|
||||
for (int s=0; s<fes.Size(); ++s)
|
||||
{
|
||||
const ParFiniteElementSpace *pfes = ParFESpace(s);
|
||||
fe[s] = pfes->GetFE(tr->Elem1No);
|
||||
fe2[s] = pfes->GetFaceNbrFE(Elem2NbrNo);
|
||||
|
||||
pfes->GetElementVDofs(tr->Elem1No, *(vdofs[s]));
|
||||
pfes->GetFaceNbrElementVDofs(Elem2NbrNo, *(vdofs2[s]));
|
||||
|
||||
el_x[s]->SetSize(vdofs[s]->Size() + vdofs2[s]->Size());
|
||||
xs.GetBlock(s).GetSubVector(*(vdofs[s]), el_x[s]->GetData());
|
||||
pgfs[s]->FaceNbrData().GetSubVector(*(vdofs2[s]),
|
||||
el_x[s]->GetData() + vdofs[s]->Size());
|
||||
}
|
||||
|
||||
for (int k = 0; k < fnfi.Size(); ++k)
|
||||
{
|
||||
fnfi[k]->AssembleFaceVector(fe, fe2, *tr, el_x_const, el_y);
|
||||
|
||||
for (int s=0; s<fes.Size(); ++s)
|
||||
{
|
||||
if (el_y[s]->Size() == 0) { continue; }
|
||||
ys.GetBlock(s).AddElementVector(*(vdofs[s]), *el_y[s]);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int s=0; s<fes.Size(); ++s)
|
||||
{
|
||||
delete pgfs[s];
|
||||
delete vdofs2[s];
|
||||
delete vdofs[s];
|
||||
delete el_y[s];
|
||||
delete el_x[s];
|
||||
}
|
||||
}
|
||||
|
||||
for (int s=0; s<fes.Size(); ++s)
|
||||
@@ -328,6 +486,106 @@ void ParBlockNonlinearForm::SetGradientType(Operator::Type tid)
|
||||
}
|
||||
}
|
||||
|
||||
void ParBlockNonlinearForm::GradientSharedFaces(const BlockVector &xs,
|
||||
int skip_zeros) const
|
||||
{
|
||||
// Terms over shared interior faces in parallel.
|
||||
ParMesh *pmesh = ParFESpace(0)->GetParMesh();
|
||||
FaceElementTransformations *tr;
|
||||
|
||||
Array<Array<int> *>vdofs(fes.Size());
|
||||
Array<Array<int> *>vdofs2(fes.Size());
|
||||
Array<Array<int> *>vdofs_all(fes.Size());
|
||||
Array<Vector *> el_x(fes.Size());
|
||||
Array<const Vector *> el_x_const(fes.Size());
|
||||
Array2D<DenseMatrix *> elmats(fes.Size(), fes.Size());
|
||||
Array<const FiniteElement *> fe(fes.Size());
|
||||
Array<const FiniteElement *> fe2(fes.Size());
|
||||
Array<ParGridFunction *> pgfs(fes.Size());
|
||||
|
||||
for (int s1=0; s1<fes.Size(); ++s1)
|
||||
{
|
||||
el_x_const[s1] = el_x[s1] = new Vector();
|
||||
vdofs[s1] = new Array<int>;
|
||||
vdofs2[s1] = new Array<int>;
|
||||
vdofs_all[s1] = new Array<int>;
|
||||
pgfs[s1] = new ParGridFunction(
|
||||
const_cast<ParFiniteElementSpace*>(ParFESpace(s1)),
|
||||
const_cast<Vector&>(xs.GetBlock(s1)));
|
||||
pgfs[s1]->ExchangeFaceNbrData();
|
||||
for (int s2=0; s2<fes.Size(); ++s2)
|
||||
{
|
||||
elmats(s1,s2) = new DenseMatrix();
|
||||
}
|
||||
}
|
||||
|
||||
const int n_shared_faces = pmesh->GetNSharedFaces();
|
||||
for (int i = 0; i < n_shared_faces; i++)
|
||||
{
|
||||
tr = pmesh->GetSharedFaceTransformations(i, true);
|
||||
int Elem2NbrNo = tr->Elem2No - pmesh->GetNE();
|
||||
|
||||
for (int s=0; s<fes.Size(); ++s)
|
||||
{
|
||||
const ParFiniteElementSpace *pfes = ParFESpace(s);
|
||||
fe[s] = pfes->GetFE(tr->Elem1No);
|
||||
fe2[s] = pfes->GetFaceNbrFE(Elem2NbrNo);
|
||||
|
||||
pfes->GetElementVDofs(tr->Elem1No, *(vdofs[s]));
|
||||
pfes->GetFaceNbrElementVDofs(Elem2NbrNo, *(vdofs2[s]));
|
||||
|
||||
el_x[s]->SetSize(vdofs[s]->Size() + vdofs2[s]->Size());
|
||||
xs.GetBlock(s).GetSubVector(*(vdofs[s]), el_x[s]->GetData());
|
||||
pgfs[s]->FaceNbrData().GetSubVector(*(vdofs2[s]),
|
||||
el_x[s]->GetData() + vdofs[s]->Size());
|
||||
|
||||
vdofs[s]->Copy(*vdofs_all[s]);
|
||||
|
||||
const int lvsize = pfes->GetVSize();
|
||||
for (int j = 0; j < vdofs2[s]->Size(); j++)
|
||||
{
|
||||
if ((*vdofs2[s])[j] >= 0)
|
||||
{
|
||||
(*vdofs2[s])[j] += lvsize;
|
||||
}
|
||||
else
|
||||
{
|
||||
(*vdofs2[s])[j] -= lvsize;
|
||||
}
|
||||
}
|
||||
vdofs_all[s]->Append(*(vdofs2[s]));
|
||||
}
|
||||
|
||||
for (int k = 0; k < fnfi.Size(); ++k)
|
||||
{
|
||||
fnfi[k]->AssembleFaceGrad(fe, fe2, *tr, el_x_const, elmats);
|
||||
|
||||
for (int s1=0; s1<fes.Size(); ++s1)
|
||||
{
|
||||
for (int s2=0; s2<fes.Size(); ++s2)
|
||||
{
|
||||
if (elmats(s1,s2)->Height() == 0) { continue; }
|
||||
Grads(s1,s2)->AddSubMatrix(*vdofs[s1], *vdofs_all[s2],
|
||||
*elmats(s1,s2), skip_zeros);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int s1=0; s1<fes.Size(); ++s1)
|
||||
{
|
||||
delete pgfs[s1];
|
||||
delete vdofs_all[s1];
|
||||
delete vdofs2[s1];
|
||||
delete vdofs[s1];
|
||||
delete el_x[s1];
|
||||
for (int s2=0; s2<fes.Size(); ++s2)
|
||||
{
|
||||
delete elmats(s1,s2);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
BlockOperator & ParBlockNonlinearForm::GetGradient(const Vector &x) const
|
||||
{
|
||||
if (pBlockGrad == NULL)
|
||||
@@ -347,49 +605,155 @@ BlockOperator & ParBlockNonlinearForm::GetGradient(const Vector &x) const
|
||||
}
|
||||
}
|
||||
|
||||
GetLocalGradient(x); // gradients are stored in 'Grads'
|
||||
// xs_true is not modified, so const_cast is okay
|
||||
xs_true.Update(const_cast<Vector &>(x), block_trueOffsets);
|
||||
xs.Update(block_offsets);
|
||||
|
||||
for (int s=0; s<fes.Size(); ++s)
|
||||
{
|
||||
fes[s]->GetProlongationMatrix()->Mult(
|
||||
xs_true.GetBlock(s), xs.GetBlock(s));
|
||||
}
|
||||
|
||||
if (fnfi.Size() > 0)
|
||||
{
|
||||
MFEM_ABORT("TODO: assemble contributions from shared face terms");
|
||||
}
|
||||
const int skip_zeros = 0;
|
||||
|
||||
for (int s1=0; s1<fes.Size(); ++s1)
|
||||
{
|
||||
for (int s2=0; s2<fes.Size(); ++s2)
|
||||
for (int s=0; s<fes.Size(); ++s)
|
||||
{
|
||||
OperatorHandle dA(phBlockGrad(s1,s2)->Type()),
|
||||
Ph(phBlockGrad(s1,s2)->Type()),
|
||||
Rh(phBlockGrad(s1,s2)->Type());
|
||||
const_cast<ParFiniteElementSpace*>(pfes[s])->ExchangeFaceNbrData();
|
||||
}
|
||||
|
||||
if (s1 == s2)
|
||||
for (int s1=0; s1<fes.Size(); ++s1)
|
||||
{
|
||||
for (int s2=0; s2<fes.Size(); ++s2)
|
||||
{
|
||||
dA.MakeSquareBlockDiag(pfes[s1]->GetComm(), pfes[s1]->GlobalVSize(),
|
||||
pfes[s1]->GetDofOffsets(), Grads(s1,s1));
|
||||
Ph.ConvertFrom(pfes[s1]->Dof_TrueDof_Matrix());
|
||||
phBlockGrad(s1,s1)->MakePtAP(dA, Ph);
|
||||
|
||||
OperatorHandle Ae;
|
||||
Ae.EliminateRowsCols(*phBlockGrad(s1,s1), *ess_tdofs[s1]);
|
||||
if (Grads(s1,s2) == NULL)
|
||||
{
|
||||
int nbr_size = pfes[s2]->GetFaceNbrVSize();
|
||||
Grads(s1,s2) = new SparseMatrix(pfes[s1]->GetVSize(),
|
||||
pfes[s2]->GetVSize() + nbr_size);
|
||||
}
|
||||
}
|
||||
else
|
||||
}
|
||||
|
||||
// (re)assemble Grad without b.c. into 'Grads'
|
||||
BlockNonlinearForm::ComputeGradientBlocked(xs, false);
|
||||
|
||||
GradientSharedFaces(xs, skip_zeros);
|
||||
|
||||
// finalize the gradients
|
||||
for (int s1=0; s1<fes.Size(); ++s1)
|
||||
for (int s2=0; s2<fes.Size(); ++s2)
|
||||
{
|
||||
dA.MakeRectangularBlockDiag(pfes[s1]->GetComm(),
|
||||
pfes[s1]->GlobalVSize(),
|
||||
pfes[s2]->GlobalVSize(),
|
||||
pfes[s1]->GetDofOffsets(),
|
||||
pfes[s2]->GetDofOffsets(),
|
||||
Grads(s1,s2));
|
||||
Rh.ConvertFrom(pfes[s1]->Dof_TrueDof_Matrix());
|
||||
Ph.ConvertFrom(pfes[s2]->Dof_TrueDof_Matrix());
|
||||
|
||||
phBlockGrad(s1,s2)->MakeRAP(Rh, dA, Ph);
|
||||
|
||||
phBlockGrad(s1,s2)->EliminateRows(*ess_tdofs[s1]);
|
||||
phBlockGrad(s1,s2)->EliminateCols(*ess_tdofs[s2]);
|
||||
Grads(s1,s2)->Finalize(skip_zeros);
|
||||
}
|
||||
|
||||
pBlockGrad->SetBlock(s1, s2, phBlockGrad(s1,s2)->Ptr());
|
||||
for (int s1=0; s1<fes.Size(); ++s1)
|
||||
{
|
||||
for (int s2=0; s2<fes.Size(); ++s2)
|
||||
{
|
||||
OperatorHandle hdA;
|
||||
OperatorHandle dA(phBlockGrad(s1,s2)->Type()),
|
||||
Ph(phBlockGrad(s1,s2)->Type()),
|
||||
Rh(phBlockGrad(s1,s2)->Type());
|
||||
|
||||
// handle the case when 'a' contains off-diagonal
|
||||
int lvsize = pfes[s2]->GetVSize();
|
||||
const HYPRE_BigInt *face_nbr_glob_ldof =
|
||||
const_cast<ParFiniteElementSpace*>(pfes[s2])->GetFaceNbrGlobalDofMap();
|
||||
HYPRE_BigInt ldof_offset = pfes[s2]->GetMyDofOffset();
|
||||
|
||||
Array<HYPRE_BigInt> glob_J(Grads(s1,s2)->NumNonZeroElems());
|
||||
int *J = Grads(s1,s2)->GetJ();
|
||||
for (int i = 0; i < glob_J.Size(); i++)
|
||||
{
|
||||
if (J[i] < lvsize)
|
||||
{
|
||||
glob_J[i] = J[i] + ldof_offset;
|
||||
}
|
||||
else
|
||||
{
|
||||
glob_J[i] = face_nbr_glob_ldof[J[i] - lvsize];
|
||||
}
|
||||
}
|
||||
|
||||
// TODO - construct dA directly in the A format
|
||||
hdA.Reset(
|
||||
new HypreParMatrix(pfes[s2]->GetComm(), pfes[s1]->GetVSize(),
|
||||
pfes[s1]->GlobalVSize(), pfes[s2]->GlobalVSize(),
|
||||
Grads(s1,s2)->GetI(), glob_J, Grads(s1,s2)->GetData(),
|
||||
pfes[s1]->GetDofOffsets(), pfes[s2]->GetDofOffsets()));
|
||||
// - hdA owns the new HypreParMatrix
|
||||
// - the above constructor copies all input arrays
|
||||
glob_J.DeleteAll();
|
||||
dA.ConvertFrom(hdA);
|
||||
|
||||
if (s1 == s2)
|
||||
{
|
||||
Ph.ConvertFrom(pfes[s1]->Dof_TrueDof_Matrix());
|
||||
phBlockGrad(s1,s1)->MakePtAP(dA, Ph);
|
||||
|
||||
OperatorHandle Ae;
|
||||
Ae.EliminateRowsCols(*phBlockGrad(s1,s1), *ess_tdofs[s1]);
|
||||
}
|
||||
else
|
||||
{
|
||||
Rh.ConvertFrom(pfes[s1]->Dof_TrueDof_Matrix());
|
||||
Ph.ConvertFrom(pfes[s2]->Dof_TrueDof_Matrix());
|
||||
|
||||
phBlockGrad(s1,s2)->MakeRAP(Rh, dA, Ph);
|
||||
|
||||
phBlockGrad(s1,s2)->EliminateRows(*ess_tdofs[s1]);
|
||||
phBlockGrad(s1,s2)->EliminateCols(*ess_tdofs[s2]);
|
||||
}
|
||||
|
||||
pBlockGrad->SetBlock(s1, s2, phBlockGrad(s1,s2)->Ptr());
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
// (re)assemble Grad without b.c. into 'Grads'
|
||||
BlockNonlinearForm::ComputeGradientBlocked(xs);
|
||||
|
||||
for (int s1=0; s1<fes.Size(); ++s1)
|
||||
{
|
||||
for (int s2=0; s2<fes.Size(); ++s2)
|
||||
{
|
||||
OperatorHandle dA(phBlockGrad(s1,s2)->Type()),
|
||||
Ph(phBlockGrad(s1,s2)->Type()),
|
||||
Rh(phBlockGrad(s1,s2)->Type());
|
||||
|
||||
if (s1 == s2)
|
||||
{
|
||||
dA.MakeSquareBlockDiag(pfes[s1]->GetComm(), pfes[s1]->GlobalVSize(),
|
||||
pfes[s1]->GetDofOffsets(), Grads(s1,s1));
|
||||
Ph.ConvertFrom(pfes[s1]->Dof_TrueDof_Matrix());
|
||||
phBlockGrad(s1,s1)->MakePtAP(dA, Ph);
|
||||
|
||||
OperatorHandle Ae;
|
||||
Ae.EliminateRowsCols(*phBlockGrad(s1,s1), *ess_tdofs[s1]);
|
||||
}
|
||||
else
|
||||
{
|
||||
dA.MakeRectangularBlockDiag(pfes[s1]->GetComm(),
|
||||
pfes[s1]->GlobalVSize(),
|
||||
pfes[s2]->GlobalVSize(),
|
||||
pfes[s1]->GetDofOffsets(),
|
||||
pfes[s2]->GetDofOffsets(),
|
||||
Grads(s1,s2));
|
||||
Rh.ConvertFrom(pfes[s1]->Dof_TrueDof_Matrix());
|
||||
Ph.ConvertFrom(pfes[s2]->Dof_TrueDof_Matrix());
|
||||
|
||||
phBlockGrad(s1,s2)->MakeRAP(Rh, dA, Ph);
|
||||
|
||||
phBlockGrad(s1,s2)->EliminateRows(*ess_tdofs[s1]);
|
||||
phBlockGrad(s1,s2)->EliminateCols(*ess_tdofs[s2]);
|
||||
}
|
||||
|
||||
pBlockGrad->SetBlock(s1, s2, phBlockGrad(s1,s2)->Ptr());
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -29,6 +29,8 @@ protected:
|
||||
mutable ParGridFunction X, Y;
|
||||
mutable OperatorHandle pGrad;
|
||||
|
||||
void GradientSharedFaces(const Vector &x, int skip_zeros = 1) const;
|
||||
|
||||
public:
|
||||
ParNonlinearForm(ParFiniteElementSpace *pf);
|
||||
|
||||
@@ -81,6 +83,8 @@ protected:
|
||||
mutable Array2D<OperatorHandle *> phBlockGrad;
|
||||
mutable BlockOperator *pBlockGrad;
|
||||
|
||||
void GradientSharedFaces(const BlockVector &xs, int skip_zeros) const;
|
||||
|
||||
public:
|
||||
/// Computes the energy of the system
|
||||
real_t GetEnergy(const Vector &x) const override;
|
||||
|
||||
@@ -1,214 +0,0 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
|
||||
// Abstract array data type
|
||||
|
||||
#include "array.hpp"
|
||||
#include "../general/forall.hpp"
|
||||
#include <fstream>
|
||||
#include <type_traits>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
template <class T>
|
||||
void Array<T>::Print(std::ostream &os, int width) const
|
||||
{
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
os << data[i];
|
||||
if ( !((i+1) % width) || i+1 == size )
|
||||
{
|
||||
os << '\n';
|
||||
}
|
||||
else
|
||||
{
|
||||
os << " ";
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <class T>
|
||||
void Array<T>::Save(std::ostream &os, int fmt) const
|
||||
{
|
||||
if (fmt == 0)
|
||||
{
|
||||
os << size << '\n';
|
||||
}
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
os << operator[](i) << '\n';
|
||||
}
|
||||
}
|
||||
|
||||
template <class T>
|
||||
void Array<T>::Load(std::istream &in, int fmt)
|
||||
{
|
||||
if (fmt == 0)
|
||||
{
|
||||
int new_size;
|
||||
in >> new_size;
|
||||
SetSize(new_size);
|
||||
}
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
in >> operator[](i);
|
||||
}
|
||||
}
|
||||
|
||||
template <class T>
|
||||
T Array<T>::Max() const
|
||||
{
|
||||
MFEM_ASSERT(size > 0, "Array is empty with size " << size);
|
||||
|
||||
T max = operator[](0);
|
||||
for (int i = 1; i < size; i++)
|
||||
{
|
||||
if (max < operator[](i))
|
||||
{
|
||||
max = operator[](i);
|
||||
}
|
||||
}
|
||||
|
||||
return max;
|
||||
}
|
||||
|
||||
template <class T>
|
||||
T Array<T>::Min() const
|
||||
{
|
||||
MFEM_ASSERT(size > 0, "Array is empty with size " << size);
|
||||
|
||||
T min = operator[](0);
|
||||
for (int i = 1; i < size; i++)
|
||||
{
|
||||
if (operator[](i) < min)
|
||||
{
|
||||
min = operator[](i);
|
||||
}
|
||||
}
|
||||
|
||||
return min;
|
||||
}
|
||||
|
||||
// Partial Sum
|
||||
template <class T>
|
||||
void Array<T>::PartialSum()
|
||||
{
|
||||
T sum = static_cast<T>(0);
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
sum+=operator[](i);
|
||||
operator[](i) = sum;
|
||||
}
|
||||
}
|
||||
|
||||
template <class T>
|
||||
void Array<T>::Abs()
|
||||
{
|
||||
static_assert(std::is_arithmetic<T>::value, "Use with arithmetic types!");
|
||||
const bool useDevice = UseDevice();
|
||||
const int N = size;
|
||||
auto y = ReadWrite(useDevice);
|
||||
mfem::forall_switch(useDevice, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
y[i] = std::abs(y[i]);
|
||||
});
|
||||
}
|
||||
|
||||
// Sum
|
||||
template <class T>
|
||||
T Array<T>::Sum() const
|
||||
{
|
||||
T sum = static_cast<T>(0);
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
sum+=operator[](i);
|
||||
}
|
||||
|
||||
return sum;
|
||||
}
|
||||
|
||||
template <class T>
|
||||
int Array<T>::IsSorted() const
|
||||
{
|
||||
T val_prev = operator[](0), val;
|
||||
for (int i = 1; i < size; i++)
|
||||
{
|
||||
val=operator[](i);
|
||||
if (val < val_prev)
|
||||
{
|
||||
return 0;
|
||||
}
|
||||
val_prev = val;
|
||||
}
|
||||
|
||||
return 1;
|
||||
}
|
||||
|
||||
template <class T>
|
||||
bool Array<T>::IsConstant() const
|
||||
{
|
||||
if (size < 2) { return true; }
|
||||
const T v0 = data[0];
|
||||
for (int i = 1; i < size; i++)
|
||||
{
|
||||
if (data[i] != v0)
|
||||
{
|
||||
return false;
|
||||
}
|
||||
}
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
template <class T>
|
||||
void Array2D<T>::Load(const char *filename, int fmt)
|
||||
{
|
||||
std::ifstream in;
|
||||
in.open(filename, std::ifstream::in);
|
||||
MFEM_VERIFY(in.is_open(), "File " << filename << " does not exist.");
|
||||
Load(in, fmt);
|
||||
in.close();
|
||||
}
|
||||
|
||||
template <class T>
|
||||
void Array2D<T>::Print(std::ostream &os, int width_)
|
||||
{
|
||||
int height = this->NumRows();
|
||||
int width = this->NumCols();
|
||||
|
||||
for (int i = 0; i < height; i++)
|
||||
{
|
||||
os << "[row " << i << "]\n";
|
||||
for (int j = 0; j < width; j++)
|
||||
{
|
||||
os << (*this)(i,j);
|
||||
if ( (j+1) == width_ || (j+1) % width_ == 0 )
|
||||
{
|
||||
os << '\n';
|
||||
}
|
||||
else
|
||||
{
|
||||
os << ' ';
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template class Array<char>;
|
||||
template class Array<int>;
|
||||
template class Array<long long>;
|
||||
template class Array<real_t>;
|
||||
template class Array2D<int>;
|
||||
template class Array2D<real_t>;
|
||||
|
||||
} // namespace mfem
|
||||
+213
-15
@@ -16,9 +16,13 @@
|
||||
#include "mem_manager.hpp"
|
||||
#include "device.hpp"
|
||||
#include "error.hpp"
|
||||
#include "forall.hpp"
|
||||
#include "globals.hpp"
|
||||
#include "reducers.hpp"
|
||||
#include "scan.hpp"
|
||||
|
||||
#include <iostream>
|
||||
#include <fstream>
|
||||
#include <cstdlib>
|
||||
#include <cstring>
|
||||
#include <algorithm>
|
||||
@@ -135,6 +139,8 @@ public:
|
||||
/// Return the device flag of the Memory object used by the Array
|
||||
bool UseDevice() const { return data.UseDevice(); }
|
||||
|
||||
void UseDevice(bool use_dev) { data.UseDevice(use_dev); }
|
||||
|
||||
/// Return true if the data will be deleted by the Array
|
||||
inline bool OwnsData() const { return data.OwnsHostPtr(); }
|
||||
|
||||
@@ -275,11 +281,11 @@ public:
|
||||
|
||||
/** @brief Find the maximal element in the array, using the comparison
|
||||
operator `<` for class T. */
|
||||
T Max() const;
|
||||
inline T Max() const;
|
||||
|
||||
/** @brief Find the minimal element in the array, using the comparison
|
||||
operator `<` for class T. */
|
||||
T Min() const;
|
||||
inline T Min() const;
|
||||
|
||||
/// Sorts the array in ascending order. This requires operator< to be defined for T.
|
||||
void Sort() { std::sort((T*)data, data + size); }
|
||||
@@ -297,22 +303,22 @@ public:
|
||||
}
|
||||
|
||||
/// Return 1 if the array is sorted from lowest to highest. Otherwise return 0.
|
||||
int IsSorted() const;
|
||||
inline int IsSorted() const;
|
||||
|
||||
/// Does the Array have Size zero.
|
||||
bool IsEmpty() const { return Size() == 0; }
|
||||
|
||||
/// Return true if all entries of the array are the same.
|
||||
bool IsConstant() const;
|
||||
inline bool IsConstant() const;
|
||||
|
||||
/// Fill the entries of the array with the cumulative sum of the entries.
|
||||
void PartialSum();
|
||||
inline void PartialSum();
|
||||
|
||||
/// Replace each entry of the array with its absolute value.
|
||||
void Abs();
|
||||
inline void Abs();
|
||||
|
||||
/// Return the sum of all the array entries using the '+'' operator for class 'T'.
|
||||
T Sum() const;
|
||||
inline T Sum() const;
|
||||
|
||||
/// Set all entries of the array to the provided constant.
|
||||
inline void operator=(const T &a);
|
||||
@@ -797,8 +803,14 @@ template <typename T> template <typename CT>
|
||||
inline Array<T> &Array<T>::operator=(const Array<CT> &src)
|
||||
{
|
||||
SetSize(src.Size());
|
||||
for (int i = 0; i < size; i++) { (*this)[i] = T(src[i]); }
|
||||
return *this;
|
||||
|
||||
const bool use_dev = UseDevice() || src.UseDevice();
|
||||
const auto x = src.Read(use_dev);
|
||||
auto y = Write(use_dev);
|
||||
mfem::forall_switch(use_dev, size, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
y[i] = x[i];
|
||||
});
|
||||
}
|
||||
|
||||
template <class T>
|
||||
@@ -1014,19 +1026,24 @@ template <class T>
|
||||
inline void Array<T>::GetSubArray(int offset, int sa_size, Array<T> &sa) const
|
||||
{
|
||||
sa.SetSize(sa_size);
|
||||
for (int i = 0; i < sa_size; i++)
|
||||
const bool use_dev = UseDevice() || sa.UseDevice();
|
||||
const auto x = Read(use_dev);
|
||||
auto y = sa.Write(use_dev);
|
||||
mfem::forall_switch(use_dev, sa_size, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
sa[i] = (*this)[offset+i];
|
||||
}
|
||||
y[i] = x[offset + i];
|
||||
});
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::operator=(const T &a)
|
||||
{
|
||||
for (int i = 0; i < size; i++)
|
||||
const bool use_dev = UseDevice();
|
||||
auto x = Write(use_dev);
|
||||
mfem::forall_switch(use_dev, size, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
data[i] = a;
|
||||
}
|
||||
x[i] = a;
|
||||
});
|
||||
}
|
||||
|
||||
template <class T>
|
||||
@@ -1035,6 +1052,153 @@ inline void Array<T>::Assign(const T *p)
|
||||
data.CopyFromHost(p, Size());
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::Print(std::ostream &os, int width) const
|
||||
{
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
os << data[i];
|
||||
if ( !((i+1) % width) || i+1 == size )
|
||||
{
|
||||
os << '\n';
|
||||
}
|
||||
else
|
||||
{
|
||||
os << " ";
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::Save(std::ostream &os, int fmt) const
|
||||
{
|
||||
if (fmt == 0)
|
||||
{
|
||||
os << size << '\n';
|
||||
}
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
os << operator[](i) << '\n';
|
||||
}
|
||||
}
|
||||
|
||||
template <class T>
|
||||
void Array<T>::Load(std::istream &in, int fmt)
|
||||
{
|
||||
if (fmt == 0)
|
||||
{
|
||||
int new_size;
|
||||
in >> new_size;
|
||||
SetSize(new_size);
|
||||
}
|
||||
for (int i = 0; i < size; i++)
|
||||
{
|
||||
in >> operator[](i);
|
||||
}
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline T Array<T>::Max() const
|
||||
{
|
||||
MFEM_ASSERT(size > 0, "Array is empty with size " << size);
|
||||
|
||||
T max = operator[](0);
|
||||
for (int i = 1; i < size; i++)
|
||||
{
|
||||
if (max < operator[](i))
|
||||
{
|
||||
max = operator[](i);
|
||||
}
|
||||
}
|
||||
|
||||
return max;
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline T Array<T>::Min() const
|
||||
{
|
||||
MFEM_ASSERT(size > 0, "Array is empty with size " << size);
|
||||
|
||||
T min = operator[](0);
|
||||
for (int i = 1; i < size; i++)
|
||||
{
|
||||
if (operator[](i) < min)
|
||||
{
|
||||
min = operator[](i);
|
||||
}
|
||||
}
|
||||
|
||||
return min;
|
||||
}
|
||||
|
||||
// Partial Sum
|
||||
template <class T>
|
||||
inline void Array<T>::PartialSum()
|
||||
{
|
||||
auto data_ptr = ReadWrite(UseDevice());
|
||||
InclusiveScan(UseDevice(), data_ptr, data_ptr, size);
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline void Array<T>::Abs()
|
||||
{
|
||||
static_assert(std::is_arithmetic<T>::value, "Use with arithmetic types!");
|
||||
const bool useDevice = UseDevice();
|
||||
const int N = size;
|
||||
auto y = ReadWrite(useDevice);
|
||||
mfem::forall_switch(useDevice, N, [=] MFEM_HOST_DEVICE (int i)
|
||||
{
|
||||
y[i] = std::abs(y[i]);
|
||||
});
|
||||
}
|
||||
|
||||
// Sum
|
||||
template <class T>
|
||||
inline T Array<T>::Sum() const
|
||||
{
|
||||
T sum = static_cast<T>(0);
|
||||
if (size > 0)
|
||||
{
|
||||
const auto m_data = Read(UseDevice());
|
||||
reduce(size, sum, [=] MFEM_HOST_DEVICE(int i, T &r) { r += m_data[i]; },
|
||||
/* */ SumReducer<T> {}, UseDevice());
|
||||
}
|
||||
return sum;
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline int Array<T>::IsSorted() const
|
||||
{
|
||||
T val_prev = operator[](0), val;
|
||||
for (int i = 1; i < size; i++)
|
||||
{
|
||||
val=operator[](i);
|
||||
if (val < val_prev)
|
||||
{
|
||||
return 0;
|
||||
}
|
||||
val_prev = val;
|
||||
}
|
||||
|
||||
return 1;
|
||||
}
|
||||
|
||||
template <class T>
|
||||
inline bool Array<T>::IsConstant() const
|
||||
{
|
||||
if (size < 2) { return true; }
|
||||
const T v0 = data[0];
|
||||
for (int i = 1; i < size; i++)
|
||||
{
|
||||
if (data[i] != v0)
|
||||
{
|
||||
return false;
|
||||
}
|
||||
}
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
|
||||
template <class T>
|
||||
inline const T &Array2D<T>::operator()(int i, int j) const
|
||||
@@ -1074,6 +1238,40 @@ inline T *Array2D<T>::operator[](int i)
|
||||
return &array1d[i*N];
|
||||
}
|
||||
|
||||
template <class T>
|
||||
void Array2D<T>::Load(const char *filename, int fmt)
|
||||
{
|
||||
std::ifstream in;
|
||||
in.open(filename, std::ifstream::in);
|
||||
MFEM_VERIFY(in.is_open(), "File " << filename << " does not exist.");
|
||||
Load(in, fmt);
|
||||
in.close();
|
||||
}
|
||||
|
||||
template <class T>
|
||||
void Array2D<T>::Print(std::ostream &os, int width_)
|
||||
{
|
||||
int height = this->NumRows();
|
||||
int width = this->NumCols();
|
||||
|
||||
for (int i = 0; i < height; i++)
|
||||
{
|
||||
os << "[row " << i << "]\n";
|
||||
for (int j = 0; j < width; j++)
|
||||
{
|
||||
os << (*this)(i,j);
|
||||
if ( (j+1) == width_ || (j+1) % width_ == 0 )
|
||||
{
|
||||
os << '\n';
|
||||
}
|
||||
else
|
||||
{
|
||||
os << ' ';
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
template <class T>
|
||||
inline void Swap(Array2D<T> &a, Array2D<T> &b)
|
||||
|
||||
+29
-10
@@ -12,7 +12,6 @@
|
||||
#ifndef MFEM_REDUCERS_HPP
|
||||
#define MFEM_REDUCERS_HPP
|
||||
|
||||
#include "array.hpp"
|
||||
#include "forall.hpp"
|
||||
|
||||
#include <cmath>
|
||||
@@ -514,6 +513,33 @@ template<class B, class R> struct reduction_kernel
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
template <class T>
|
||||
class ReductionWorkspace
|
||||
{
|
||||
Memory<T> workspace;
|
||||
|
||||
static ReductionWorkspace &Instance()
|
||||
{
|
||||
static ReductionWorkspace instance;
|
||||
return instance;
|
||||
}
|
||||
|
||||
~ReductionWorkspace() { workspace.Delete(); }
|
||||
|
||||
public:
|
||||
static T *Get(int num_blocks)
|
||||
{
|
||||
ReductionWorkspace &instance = Instance();
|
||||
if (instance.workspace.Capacity() < num_blocks)
|
||||
{
|
||||
instance.workspace.Delete();
|
||||
instance.workspace.New(num_blocks, MemoryType::HOST_PINNED);
|
||||
}
|
||||
return instance.workspace;
|
||||
}
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
/**
|
||||
@@ -529,8 +555,7 @@ template<class B, class R> struct reduction_kernel
|
||||
@tparam T value_type to operate on
|
||||
*/
|
||||
template <class T, class B, class R>
|
||||
void reduce(int N, T &res, B &&body, const R &reducer, bool use_dev,
|
||||
Array<T> &workspace)
|
||||
void reduce(int N, T &res, B &&body, const R &reducer, bool use_dev)
|
||||
{
|
||||
if (N == 0)
|
||||
{
|
||||
@@ -567,13 +592,7 @@ void reduce(int N, T &res, B &&body, const R &reducer, bool use_dev,
|
||||
|
||||
red_type red{nullptr, std::forward<B>(body), reducer, N, items_per_thread};
|
||||
// allocate res to fit block_size entries
|
||||
auto mt = workspace.GetMemory().GetMemoryType();
|
||||
if (mt != MemoryType::HOST_PINNED && mt != MemoryType::MANAGED)
|
||||
{
|
||||
mt = MemoryType::HOST_PINNED;
|
||||
}
|
||||
workspace.SetSize(nblocks, mt);
|
||||
auto work = workspace.HostWrite();
|
||||
auto work = internal::ReductionWorkspace<T>::Get(nblocks);
|
||||
red.work = work;
|
||||
forall_2D(nblocks, block_size, 1, std::move(red));
|
||||
// wait for results
|
||||
|
||||
+52
-22
@@ -28,8 +28,37 @@
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
/// Equivalent to InclusiveScan(use_dev, d_in, d_out, num_items, workspace,
|
||||
/// std::plus<>{})
|
||||
|
||||
namespace internal
|
||||
{
|
||||
class ScanWorkspace
|
||||
{
|
||||
Memory<std::byte> workspace;
|
||||
static ScanWorkspace &Instance()
|
||||
{
|
||||
static ScanWorkspace instance;
|
||||
return instance;
|
||||
}
|
||||
~ScanWorkspace() { workspace.Delete(); }
|
||||
public:
|
||||
static std::byte *Get(int num_bytes)
|
||||
{
|
||||
ScanWorkspace &instance = Instance();
|
||||
if (Size() < num_bytes)
|
||||
{
|
||||
instance.workspace.Delete();
|
||||
instance.workspace.New(num_bytes);
|
||||
}
|
||||
return instance.workspace.Write(MemoryClass::DEVICE, Size());
|
||||
}
|
||||
static int Size()
|
||||
{
|
||||
return Instance().workspace.Capacity();
|
||||
}
|
||||
};
|
||||
}
|
||||
|
||||
/// Equivalent to InclusiveScan(use_dev, d_in, d_out, num_items, std::plus<>{})
|
||||
template <class InputIt, class OutputIt>
|
||||
void InclusiveScan(bool use_dev, InputIt d_in, OutputIt d_out, size_t num_items)
|
||||
{
|
||||
@@ -37,12 +66,12 @@ void InclusiveScan(bool use_dev, InputIt d_in, OutputIt d_out, size_t num_items)
|
||||
#if defined(MFEM_USE_CUDA) || defined(MFEM_USE_HIP)
|
||||
if (use_dev && mfem::Device::Allows(Backend::CUDA_MASK | Backend::HIP_MASK))
|
||||
{
|
||||
static Array<std::byte> workspace;
|
||||
size_t bytes = workspace.Size();
|
||||
if (bytes)
|
||||
using internal::ScanWorkspace;
|
||||
size_t bytes = ScanWorkspace::Size();
|
||||
if (bytes > 0)
|
||||
{
|
||||
auto err = MFEM_CUB_NAMESPACE::DeviceScan::InclusiveSum(
|
||||
workspace.Write(), bytes, d_in, d_out, num_items);
|
||||
ScanWorkspace::Get(bytes), bytes, d_in, d_out, num_items);
|
||||
#if defined(MFEM_USE_CUDA)
|
||||
if (err == cudaSuccess)
|
||||
{
|
||||
@@ -57,11 +86,12 @@ void InclusiveScan(bool use_dev, InputIt d_in, OutputIt d_out, size_t num_items)
|
||||
}
|
||||
// try allocating a larger buffer
|
||||
bytes = 0;
|
||||
// get size of buffer
|
||||
MFEM_GPU_CHECK(MFEM_CUB_NAMESPACE::DeviceScan::InclusiveSum(
|
||||
nullptr, bytes, d_in, d_out, num_items));
|
||||
workspace.SetSize(bytes);
|
||||
// resize buffer (in ScanWorkspace::Get) and try again
|
||||
MFEM_GPU_CHECK(MFEM_CUB_NAMESPACE::DeviceScan::InclusiveSum(
|
||||
workspace.Write(), bytes, d_in, d_out, num_items));
|
||||
ScanWorkspace::Get(bytes), bytes, d_in, d_out, num_items));
|
||||
return;
|
||||
}
|
||||
#endif
|
||||
@@ -101,12 +131,13 @@ void InclusiveScan(bool use_dev, InputIt d_in, OutputIt d_out, size_t num_items,
|
||||
#if defined(MFEM_USE_CUDA) || defined(MFEM_USE_HIP)
|
||||
if (use_dev && mfem::Device::Allows(Backend::CUDA_MASK | Backend::HIP_MASK))
|
||||
{
|
||||
static Array<std::byte> workspace;
|
||||
size_t bytes = workspace.Size();
|
||||
if (bytes)
|
||||
using internal::ScanWorkspace;
|
||||
size_t bytes = ScanWorkspace::Size();
|
||||
if (bytes > 0)
|
||||
{
|
||||
auto err = MFEM_CUB_NAMESPACE::DeviceScan::InclusiveScan(
|
||||
workspace.Write(), bytes, d_in, d_out, scan_op, num_items);
|
||||
ScanWorkspace::Get(bytes), bytes, d_in, d_out, scan_op,
|
||||
num_items);
|
||||
#if defined(MFEM_USE_CUDA)
|
||||
if (err == cudaSuccess)
|
||||
{
|
||||
@@ -123,9 +154,9 @@ void InclusiveScan(bool use_dev, InputIt d_in, OutputIt d_out, size_t num_items,
|
||||
bytes = 0;
|
||||
MFEM_GPU_CHECK(MFEM_CUB_NAMESPACE::DeviceScan::InclusiveScan(
|
||||
nullptr, bytes, d_in, d_out, scan_op, num_items));
|
||||
workspace.SetSize(bytes);
|
||||
MFEM_GPU_CHECK(MFEM_CUB_NAMESPACE::DeviceScan::InclusiveScan(
|
||||
workspace.Write(), bytes, d_in, d_out, scan_op, num_items));
|
||||
ScanWorkspace::Get(bytes), bytes, d_in, d_out, scan_op,
|
||||
num_items));
|
||||
return;
|
||||
}
|
||||
#endif
|
||||
@@ -164,13 +195,13 @@ void ExclusiveScan(bool use_dev, InputIt d_in, OutputIt d_out, size_t num_items,
|
||||
#if defined(MFEM_USE_CUDA) || defined(MFEM_USE_HIP)
|
||||
if (use_dev && mfem::Device::Allows(Backend::CUDA_MASK | Backend::HIP_MASK))
|
||||
{
|
||||
static Array<std::byte> workspace;
|
||||
size_t bytes = workspace.Size();
|
||||
using internal::ScanWorkspace;
|
||||
size_t bytes = ScanWorkspace::Size();
|
||||
if (bytes)
|
||||
{
|
||||
auto err = MFEM_CUB_NAMESPACE::DeviceScan::ExclusiveScan(
|
||||
workspace.Write(), bytes, d_in, d_out, scan_op, init_value,
|
||||
num_items);
|
||||
ScanWorkspace::Get(bytes), bytes, d_in, d_out, scan_op,
|
||||
init_value, num_items);
|
||||
#if defined(MFEM_USE_CUDA)
|
||||
if (err == cudaSuccess)
|
||||
{
|
||||
@@ -187,10 +218,9 @@ void ExclusiveScan(bool use_dev, InputIt d_in, OutputIt d_out, size_t num_items,
|
||||
bytes = 0;
|
||||
MFEM_GPU_CHECK(MFEM_CUB_NAMESPACE::DeviceScan::ExclusiveScan(
|
||||
nullptr, bytes, d_in, d_out, scan_op, init_value, num_items));
|
||||
workspace.SetSize(bytes);
|
||||
MFEM_GPU_CHECK(MFEM_CUB_NAMESPACE::DeviceScan::ExclusiveScan(
|
||||
workspace.Write(), bytes, d_in, d_out, scan_op, init_value,
|
||||
num_items));
|
||||
ScanWorkspace::Get(bytes), bytes, d_in, d_out, scan_op,
|
||||
init_value, num_items));
|
||||
return;
|
||||
}
|
||||
#endif
|
||||
@@ -213,7 +243,7 @@ void ExclusiveScan(bool use_dev, InputIt d_in, OutputIt d_out, size_t num_items,
|
||||
}
|
||||
|
||||
/// Equivalent to ExclusiveScan(use_dev, d_in, d_out, num_items, init_value,
|
||||
/// workspace, std::plus<>{})
|
||||
/// std::plus<>{})
|
||||
template <class InputIt, class OutputIt, class T>
|
||||
void ExclusiveScan(bool use_dev, InputIt d_in, OutputIt d_out, size_t num_items,
|
||||
T init_value)
|
||||
|
||||
@@ -167,7 +167,7 @@ void MagmaBatchedLinAlg::Invert(DenseTensor &A) const
|
||||
magma_int_t status;
|
||||
|
||||
status = MFEM_MAGMA_PREFIX(getrf_batched)(
|
||||
n, n, d_A_ptrs, n, d_P_ptrs, info_array.Write(), n_mat,
|
||||
n, n, d_LU_ptrs, n, d_P_ptrs, info_array.Write(), n_mat,
|
||||
Magma::Queue());
|
||||
MFEM_VERIFY(status == MAGMA_SUCCESS, "");
|
||||
|
||||
|
||||
+11
-9
@@ -561,7 +561,8 @@ void CopyMemory(Memory<T> &src, Memory<T> &dst, MemoryClass dst_mc,
|
||||
this function. In particular, @a dst should be empty or deleted before
|
||||
calling this function. */
|
||||
template <typename SrcT, typename DstT>
|
||||
void CopyConvertMemory(Memory<SrcT> &src, MemoryClass dst_mc, Memory<DstT> &dst)
|
||||
void CopyConvertMemory(const Memory<SrcT> &src, MemoryClass dst_mc,
|
||||
Memory<DstT> &dst)
|
||||
{
|
||||
auto capacity = src.Capacity();
|
||||
dst.New(capacity, GetMemoryType(dst_mc));
|
||||
@@ -842,8 +843,8 @@ static int GetPartitioningArraySize(MPI_Comm comm)
|
||||
///
|
||||
/// Both @a row and @a col are partitioning arrays, whose length is returned by
|
||||
/// GetPartitioningArraySize(), see @ref hypre_partitioning_descr.
|
||||
static bool RowAndColStartsAreEqual(MPI_Comm comm, HYPRE_BigInt *rows,
|
||||
HYPRE_BigInt *cols)
|
||||
static bool RowAndColStartsAreEqual(MPI_Comm comm, const HYPRE_BigInt *rows,
|
||||
const HYPRE_BigInt *cols)
|
||||
{
|
||||
const int part_size = GetPartitioningArraySize(comm);
|
||||
bool are_equal = true;
|
||||
@@ -1131,7 +1132,7 @@ HypreParMatrix::HypreParMatrix(
|
||||
HypreParMatrix::HypreParMatrix(MPI_Comm comm,
|
||||
HYPRE_BigInt *row_starts,
|
||||
HYPRE_BigInt *col_starts,
|
||||
SparseMatrix *sm_a)
|
||||
const SparseMatrix *sm_a)
|
||||
{
|
||||
MFEM_ASSERT(sm_a != NULL, "invalid input");
|
||||
MFEM_VERIFY(!HYPRE_AssumedPartitionCheck(),
|
||||
@@ -1145,7 +1146,7 @@ HypreParMatrix::HypreParMatrix(MPI_Comm comm,
|
||||
|
||||
hypre_CSRMatrixSetDataOwner(csr_a,0);
|
||||
MemoryIJData mem_a;
|
||||
CopyCSR(sm_a, mem_a, csr_a, false);
|
||||
CopyCSR(const_cast<SparseMatrix*>(sm_a), mem_a, csr_a, false);
|
||||
hypre_CSRMatrixSetRownnz(csr_a);
|
||||
|
||||
// NOTE: this call creates a matrix on host even when device support is
|
||||
@@ -1307,10 +1308,11 @@ HypreParMatrix::HypreParMatrix(MPI_Comm comm, int id, int np,
|
||||
HypreParMatrix::HypreParMatrix(MPI_Comm comm, int nrows,
|
||||
HYPRE_BigInt glob_nrows,
|
||||
HYPRE_BigInt glob_ncols,
|
||||
int *I, HYPRE_BigInt *J,
|
||||
real_t *data,
|
||||
HYPRE_BigInt *rows,
|
||||
HYPRE_BigInt *cols)
|
||||
const int *I,
|
||||
const HYPRE_BigInt *J,
|
||||
const real_t *data,
|
||||
const HYPRE_BigInt *rows,
|
||||
const HYPRE_BigInt *cols)
|
||||
{
|
||||
Init();
|
||||
|
||||
|
||||
+4
-4
@@ -565,7 +565,7 @@ public:
|
||||
partitioning arrays @a row_starts and @a col_starts. */
|
||||
HypreParMatrix(MPI_Comm comm, HYPRE_BigInt *row_starts,
|
||||
HYPRE_BigInt *col_starts,
|
||||
SparseMatrix *a); // constructor with 4 arguments, v2
|
||||
const SparseMatrix *a); // constructor with 4 arguments, v2
|
||||
|
||||
/// Creates boolean block-diagonal rectangular parallel matrix.
|
||||
/** The new HypreParMatrix does not take ownership of any of the input
|
||||
@@ -594,9 +594,9 @@ public:
|
||||
arrays (so they can be deleted). See @ref hypre_partitioning_descr "here"
|
||||
for a description of the partitioning arrays @a rows and @a cols. */
|
||||
HypreParMatrix(MPI_Comm comm, int nrows, HYPRE_BigInt glob_nrows,
|
||||
HYPRE_BigInt glob_ncols, int *I, HYPRE_BigInt *J,
|
||||
real_t *data, HYPRE_BigInt *rows,
|
||||
HYPRE_BigInt *cols); // constructor with 9 arguments
|
||||
HYPRE_BigInt glob_ncols, const int *I, const HYPRE_BigInt *J,
|
||||
const real_t *data, const HYPRE_BigInt *rows,
|
||||
const HYPRE_BigInt *cols); // constructor with 9 arguments
|
||||
|
||||
/** @brief Copy constructor for a ParCSR matrix which creates a deep copy of
|
||||
structure and data from @a P. */
|
||||
|
||||
+73
-117
@@ -46,6 +46,12 @@
|
||||
#define MFEM_GPUSPARSE_ALG HIPSPARSE_CSRMV_ALG1
|
||||
#endif // defined(MFEM_USE_CUDA)
|
||||
|
||||
#if defined(MFEM_USE_SINGLE)
|
||||
#define MFEM_CUDA_or_HIP_REAL_T MFEM_CUDA_or_HIP(_R_32F)
|
||||
#elif defined(MFEM_USE_DOUBLE)
|
||||
#define MFEM_CUDA_or_HIP_REAL_T MFEM_CUDA_or_HIP(_R_64F)
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
@@ -57,8 +63,10 @@ int SparseMatrix::SparseMatrixCount = 0;
|
||||
/// @cond Suppress_Doxygen_warnings
|
||||
MFEM_cu_or_hip(sparseHandle_t) SparseMatrix::handle = nullptr;
|
||||
/// @endcond
|
||||
#ifndef MFEM_CUDA_1897_WORKAROUND
|
||||
size_t SparseMatrix::bufferSize = 0;
|
||||
void * SparseMatrix::dBuffer = nullptr;
|
||||
#endif
|
||||
#endif // MFEM_USE_CUDA_OR_HIP
|
||||
|
||||
void SparseMatrix::InitGPUSparse()
|
||||
@@ -464,109 +472,67 @@ void SparseMatrix::SortColumnIndices()
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_CUDA_OR_HIP
|
||||
if ( Device::Allows( Backend::CUDA_MASK ))
|
||||
if (Device::Allows(Backend::CUDA_MASK) || Device::Allows(Backend::HIP_MASK))
|
||||
{
|
||||
#if defined(MFEM_USE_CUDA)
|
||||
size_t pBufferSizeInBytes = 0;
|
||||
void *pBuffer = NULL;
|
||||
|
||||
const int n = Height();
|
||||
const int m = Width();
|
||||
const int m = Height();
|
||||
const int n = Width();
|
||||
const int nnzA = J.Capacity();
|
||||
real_t * d_a_sorted = ReadWriteData();
|
||||
const int * d_ia = ReadI();
|
||||
int * d_ja_sorted = ReadWriteJ();
|
||||
csru2csrInfo_t sortInfoA;
|
||||
const int *d_ia = ReadI();
|
||||
int *d_ja = ReadWriteJ();
|
||||
|
||||
cusparseMatDescr_t matA_descr;
|
||||
cusparseCreateMatDescr( &matA_descr );
|
||||
cusparseSetMatIndexBase( matA_descr, CUSPARSE_INDEX_BASE_ZERO );
|
||||
cusparseSetMatType( matA_descr, CUSPARSE_MATRIX_TYPE_GENERAL );
|
||||
// Get size of temporary buffer needed to sort the column indices,
|
||||
// allocate the temporary buffer.
|
||||
size_t pBufferSizeInBytes;
|
||||
MFEM_cu_or_hip(sparseXcsrsort_bufferSizeExt)(handle, m, n, nnzA, d_ia,
|
||||
d_ja, &pBufferSizeInBytes);
|
||||
void *pBuffer = MFEM_Cu_or_Hip(MemAlloc)(&pBuffer, pBufferSizeInBytes);
|
||||
|
||||
cusparseCreateCsru2csrInfo( &sortInfoA );
|
||||
// Create matrix descriptor, will have default values
|
||||
// CUSPARSE_INDEX_BASE_ZERO and CUSPARSE_MATRIX_TYPE_GENERAL.
|
||||
MFEM_cu_or_hip(sparseMatDescr_t) matA_descr;
|
||||
MFEM_cu_or_hip(sparseCreateMatDescr)(&matA_descr);
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
cusparseScsru2csr_bufferSizeExt( handle, n, m, nnzA, d_a_sorted, d_ia,
|
||||
d_ja_sorted, sortInfoA,
|
||||
&pBufferSizeInBytes);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
cusparseDcsru2csr_bufferSizeExt( handle, n, m, nnzA, d_a_sorted, d_ia,
|
||||
d_ja_sorted, sortInfoA,
|
||||
&pBufferSizeInBytes);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
// Initialize permutation to identity
|
||||
Array<int> P(nnzA);
|
||||
int *d_P = P.Write();
|
||||
mfem::forall(nnzA, [=] MFEM_HOST_DEVICE (int i) { d_P[i] = i; });
|
||||
|
||||
CuMemAlloc( &pBuffer, pBufferSizeInBytes );
|
||||
// Sort the column indices. The array d_ja will now be sorted. The
|
||||
// permutation required to sort the values will be returned in d_P.
|
||||
MFEM_cu_or_hip(sparseXcsrsort)(handle, m, n, nnzA, matA_descr, d_ia, d_ja,
|
||||
d_P, pBuffer);
|
||||
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
cusparseScsru2csr( handle, n, m, nnzA, matA_descr, d_a_sorted, d_ia,
|
||||
d_ja_sorted, sortInfoA, pBuffer);
|
||||
#elif defined MFEM_USE_DOUBLE
|
||||
cusparseDcsru2csr( handle, n, m, nnzA, matA_descr, d_a_sorted, d_ia,
|
||||
d_ja_sorted, sortInfoA, pBuffer);
|
||||
#else
|
||||
MFEM_ABORT("Floating point type undefined");
|
||||
#endif
|
||||
// Create a copy of the unsorted matrix values.
|
||||
real_t *d_a = ReadWriteData();
|
||||
void *d_a_unsorted = MFEM_Cu_or_Hip(MemAlloc)(&d_a_unsorted,
|
||||
nnzA * sizeof(real_t));
|
||||
MFEM_Cu_or_Hip(MemcpyDtoD)(d_a_unsorted, d_a, nnzA * sizeof(real_t));
|
||||
|
||||
// The above call is (at least in some cases) asynchronous, so we need to
|
||||
// wait for it to finish before we can free device temporaries.
|
||||
// Create the (input) dense vector with the unsorted values.
|
||||
MFEM_cu_or_hip(sparseDnVecDescr_t) d_a_dense;
|
||||
MFEM_cu_or_hip(sparseCreateDnVec)(&d_a_dense, nnzA, d_a_unsorted,
|
||||
MFEM_CUDA_or_HIP_REAL_T);
|
||||
|
||||
// Create the (output) sparse vector that will have the sorted values.
|
||||
MFEM_cu_or_hip(sparseSpVecDescr_t) d_a_sparse;
|
||||
MFEM_cu_or_hip(sparseCreateSpVec)(&d_a_sparse, nnzA, nnzA, d_P, d_a,
|
||||
MFEM_CU_or_HIP(SPARSE_INDEX_32I),
|
||||
MFEM_CU_or_HIP(SPARSE_INDEX_BASE_ZERO),
|
||||
MFEM_CUDA_or_HIP_REAL_T);
|
||||
|
||||
// Sort the matrix values using the permutation vector.
|
||||
MFEM_cu_or_hip(sparseGather)(handle, d_a_dense, d_a_sparse);
|
||||
|
||||
// The above calls may be asynchronous, so we need to wait for them to
|
||||
// finish before we can free memory.
|
||||
MFEM_STREAM_SYNC;
|
||||
|
||||
cusparseDestroyCsru2csrInfo( sortInfoA );
|
||||
cusparseDestroyMatDescr( matA_descr );
|
||||
MFEM_cu_or_hip(sparseDestroyDnVec)(d_a_dense);
|
||||
MFEM_cu_or_hip(sparseDestroySpVec)(d_a_sparse);
|
||||
MFEM_cu_or_hip(sparseDestroyMatDescr)(matA_descr);
|
||||
|
||||
CuMemFree( pBuffer );
|
||||
#endif
|
||||
}
|
||||
else if ( Device::Allows( Backend::HIP_MASK ))
|
||||
{
|
||||
#if defined(MFEM_USE_HIP)
|
||||
size_t pBufferSizeInBytes = 0;
|
||||
void *pBuffer = NULL;
|
||||
int *P = NULL;
|
||||
|
||||
const int n = Height();
|
||||
const int m = Width();
|
||||
const int nnzA = J.Capacity();
|
||||
real_t * d_a_sorted = ReadWriteData();
|
||||
const int * d_ia = ReadI();
|
||||
int * d_ja_sorted = ReadWriteJ();
|
||||
|
||||
hipsparseMatDescr_t descrA;
|
||||
hipsparseCreateMatDescr( &descrA );
|
||||
// FIXME: There is not in-place version of csr sort in hipSPARSE currently, so we make
|
||||
// a temporary copy of the data for gthr, sort that, and then copy the sorted values
|
||||
// back to the array being returned. Where there is an in-place version available,
|
||||
// we should use it.
|
||||
Array< real_t > a_tmp( nnzA );
|
||||
real_t *d_a_tmp = a_tmp.Write();
|
||||
|
||||
hipsparseXcsrsort_bufferSizeExt(handle, n, m, nnzA, d_ia, d_ja_sorted,
|
||||
&pBufferSizeInBytes);
|
||||
|
||||
HipMemAlloc( &pBuffer, pBufferSizeInBytes );
|
||||
HipMemAlloc( (void**)&P, nnzA * sizeof(int) );
|
||||
|
||||
hipsparseCreateIdentityPermutation(handle, nnzA, P);
|
||||
hipsparseXcsrsort(handle, n, m, nnzA, descrA, d_ia, d_ja_sorted, P, pBuffer);
|
||||
|
||||
#if defined(MFEM_USE_SINGLE)
|
||||
hipsparseSgthr(handle, nnzA, d_a_sorted, d_a_tmp, P,
|
||||
HIPSPARSE_INDEX_BASE_ZERO);
|
||||
#elif defined(MFEM_USE_DOUBLE)
|
||||
hipsparseDgthr(handle, nnzA, d_a_sorted, d_a_tmp, P,
|
||||
HIPSPARSE_INDEX_BASE_ZERO);
|
||||
#else
|
||||
MFEM_ABORT("Unsupported floating point type!");
|
||||
#endif
|
||||
|
||||
A.CopyFrom( a_tmp.GetMemory(), nnzA );
|
||||
hipsparseDestroyMatDescr( descrA );
|
||||
|
||||
HipMemFree( pBuffer );
|
||||
HipMemFree( P );
|
||||
#endif
|
||||
MFEM_Cu_or_Hip(MemFree)(d_a_unsorted);
|
||||
MFEM_Cu_or_Hip(MemFree)(pBuffer);
|
||||
}
|
||||
else
|
||||
#endif // MFEM_USE_CUDA_OR_HIP
|
||||
@@ -821,27 +787,15 @@ void SparseMatrix::AddMult(const Vector &x, Vector &y, const real_t a) const
|
||||
MFEM_CU_or_HIP(SPARSE_INDEX_32I),
|
||||
MFEM_CU_or_HIP(SPARSE_INDEX_32I),
|
||||
MFEM_CU_or_HIP(SPARSE_INDEX_BASE_ZERO),
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
MFEM_CUDA_or_HIP(_R_32F));
|
||||
#else
|
||||
MFEM_CUDA_or_HIP(_R_64F));
|
||||
#endif
|
||||
MFEM_CUDA_or_HIP_REAL_T);
|
||||
|
||||
// Create handles for input/output vectors
|
||||
MFEM_cu_or_hip(sparseCreateDnVec)(&vecX_descr,
|
||||
x.Size(),
|
||||
const_cast<real_t *>(d_x),
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
MFEM_CUDA_or_HIP(_R_32F));
|
||||
#else
|
||||
MFEM_CUDA_or_HIP(_R_64F));
|
||||
#endif
|
||||
MFEM_CUDA_or_HIP_REAL_T);
|
||||
MFEM_cu_or_hip(sparseCreateDnVec)(&vecY_descr, y.Size(), d_y,
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
MFEM_CUDA_or_HIP(_R_32F));
|
||||
#else
|
||||
MFEM_CUDA_or_HIP(_R_64F));
|
||||
#endif
|
||||
MFEM_CUDA_or_HIP_REAL_T);
|
||||
#else
|
||||
cusparseCreateMatDescr(&matA_descr);
|
||||
cusparseSetMatIndexBase(matA_descr, CUSPARSE_INDEX_BASE_ZERO);
|
||||
@@ -860,11 +814,7 @@ void SparseMatrix::AddMult(const Vector &x, Vector &y, const real_t a) const
|
||||
vecX_descr,
|
||||
&beta,
|
||||
vecY_descr,
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
MFEM_CUDA_or_HIP(_R_32F),
|
||||
#else
|
||||
MFEM_CUDA_or_HIP(_R_64F),
|
||||
#endif
|
||||
MFEM_CUDA_or_HIP_REAL_T,
|
||||
MFEM_GPUSPARSE_ALG,
|
||||
&newBufferSize);
|
||||
|
||||
@@ -891,11 +841,7 @@ void SparseMatrix::AddMult(const Vector &x, Vector &y, const real_t a) const
|
||||
vecX_descr,
|
||||
&beta,
|
||||
vecY_descr,
|
||||
#ifdef MFEM_USE_SINGLE
|
||||
MFEM_CUDA_or_HIP(_R_32F),
|
||||
#else
|
||||
MFEM_CUDA_or_HIP(_R_64F),
|
||||
#endif
|
||||
MFEM_CUDA_or_HIP_REAL_T,
|
||||
MFEM_GPUSPARSE_ALG,
|
||||
dBuffer);
|
||||
#else
|
||||
@@ -4372,6 +4318,14 @@ SparseMatrix::~SparseMatrix()
|
||||
#ifdef MFEM_USE_CUDA_OR_HIP
|
||||
if (Device::Allows(Backend::CUDA_MASK | Backend::HIP_MASK))
|
||||
{
|
||||
#ifdef MFEM_CUDA_1897_WORKAROUND
|
||||
if (dBuffer)
|
||||
{
|
||||
MFEM_Cu_or_Hip(MemFree)(dBuffer);
|
||||
dBuffer = nullptr;
|
||||
bufferSize = 0;
|
||||
}
|
||||
#endif
|
||||
if (SparseMatrixCount==1)
|
||||
{
|
||||
if (handle)
|
||||
@@ -4379,12 +4333,14 @@ SparseMatrix::~SparseMatrix()
|
||||
MFEM_cu_or_hip(sparseDestroy)(handle);
|
||||
handle = nullptr;
|
||||
}
|
||||
#ifndef MFEM_CUDA_1897_WORKAROUND
|
||||
if (dBuffer)
|
||||
{
|
||||
MFEM_Cu_or_Hip(MemFree)(dBuffer);
|
||||
dBuffer = nullptr;
|
||||
bufferSize = 0;
|
||||
}
|
||||
#endif
|
||||
}
|
||||
SparseMatrixCount--;
|
||||
}
|
||||
|
||||
@@ -98,9 +98,17 @@ protected:
|
||||
#ifdef MFEM_USE_CUDA_OR_HIP
|
||||
// common for hipSPARSE and cuSPARSE
|
||||
static int SparseMatrixCount;
|
||||
mutable bool initBuffers = false;
|
||||
|
||||
#if defined(MFEM_USE_CUDA) && CUDA_VERSION >= 12300 && CUDA_VERSION < 12602
|
||||
// Workaround for bug CUSPARSE-1897
|
||||
#define MFEM_CUDA_1897_WORKAROUND
|
||||
mutable size_t bufferSize = 0;
|
||||
mutable void *dBuffer = nullptr;
|
||||
#else
|
||||
static size_t bufferSize;
|
||||
static void *dBuffer;
|
||||
mutable bool initBuffers = false;
|
||||
#endif
|
||||
|
||||
#if defined(MFEM_USE_CUDA)
|
||||
cusparseStatus_t status;
|
||||
|
||||
+8
-20
@@ -92,18 +92,6 @@ struct LpReducer
|
||||
}
|
||||
};
|
||||
|
||||
static Array<real_t>& vector_workspace()
|
||||
{
|
||||
static Array<real_t> instance;
|
||||
return instance;
|
||||
}
|
||||
|
||||
static Array<DevicePair<real_t, real_t>> &Lpvector_workspace()
|
||||
{
|
||||
static Array<DevicePair<real_t, real_t>> instance;
|
||||
return instance;
|
||||
}
|
||||
|
||||
Vector::Vector(const Vector &v)
|
||||
{
|
||||
const int s = v.Size();
|
||||
@@ -991,7 +979,7 @@ real_t Vector::Norml2() const
|
||||
}
|
||||
}
|
||||
},
|
||||
L2Reducer{}, UseDevice(), Lpvector_workspace());
|
||||
L2Reducer{}, UseDevice());
|
||||
// final answer
|
||||
return res.second * sqrt(res.first);
|
||||
}
|
||||
@@ -1006,7 +994,7 @@ real_t Vector::Normlinf() const
|
||||
{
|
||||
r = fmax(r, fabs(m_data[i]));
|
||||
},
|
||||
MaxReducer<real_t> {}, UseDevice(), vector_workspace());
|
||||
MaxReducer<real_t> {}, UseDevice());
|
||||
return res;
|
||||
}
|
||||
|
||||
@@ -1020,7 +1008,7 @@ real_t Vector::Norml1() const
|
||||
{
|
||||
r += fabs(m_data[i]);
|
||||
},
|
||||
SumReducer<real_t> {}, UseDevice(), vector_workspace());
|
||||
SumReducer<real_t> {}, UseDevice());
|
||||
return res;
|
||||
}
|
||||
|
||||
@@ -1063,7 +1051,7 @@ real_t Vector::Normlp(real_t p) const
|
||||
}
|
||||
}
|
||||
},
|
||||
LpReducer{p}, UseDevice(), Lpvector_workspace());
|
||||
LpReducer{p}, UseDevice());
|
||||
// final answer
|
||||
return res.second * pow(res.first, 1.0 / p);
|
||||
} // end if p < infinity()
|
||||
@@ -1096,7 +1084,7 @@ real_t Vector::operator*(const Vector &v) const
|
||||
{
|
||||
r += m_data[i] * v_data[i];
|
||||
},
|
||||
SumReducer<real_t> {}, use_dev, vector_workspace());
|
||||
SumReducer<real_t> {}, use_dev);
|
||||
return res;
|
||||
};
|
||||
|
||||
@@ -1167,7 +1155,7 @@ real_t Vector::Min() const
|
||||
{
|
||||
r = fmin(r, m_data[i]);
|
||||
},
|
||||
MinReducer<real_t> {}, use_dev, vector_workspace());
|
||||
MinReducer<real_t> {}, use_dev);
|
||||
return res;
|
||||
};
|
||||
|
||||
@@ -1213,7 +1201,7 @@ real_t Vector::Max() const
|
||||
{
|
||||
r = fmax(r, m_data[i]);
|
||||
},
|
||||
MaxReducer<real_t> {}, use_dev, vector_workspace());
|
||||
MaxReducer<real_t> {}, use_dev);
|
||||
return res;
|
||||
};
|
||||
|
||||
@@ -1248,7 +1236,7 @@ real_t Vector::Sum() const
|
||||
{
|
||||
r += m_data[i];
|
||||
},
|
||||
SumReducer<real_t> {}, UseDevice(), vector_workspace());
|
||||
SumReducer<real_t> {}, UseDevice());
|
||||
return res;
|
||||
}
|
||||
|
||||
|
||||
@@ -461,7 +461,7 @@ void ConductionOperator::Mult(const Vector &u, Vector &du_dt) const
|
||||
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg(); // z = -z
|
||||
K->EliminateVDofsInRHS(ess_tdof_list, u, z);
|
||||
K->ParallelEliminateTDofsInRHS(ess_tdof_list, u, z);
|
||||
|
||||
M_solver.Mult(z, du_dt);
|
||||
du_dt.Print();
|
||||
@@ -483,7 +483,7 @@ void ConductionOperator::ImplicitSolve(const real_t dt,
|
||||
MFEM_VERIFY(dt == current_dt, ""); // SDIRK methods use the same dt
|
||||
Kmat.Mult(u, z);
|
||||
z.Neg();
|
||||
K->EliminateVDofsInRHS(ess_tdof_list, u, z);
|
||||
K->ParallelEliminateTDofsInRHS(ess_tdof_list, u, z);
|
||||
|
||||
T_solver.Mult(z, du_dt);
|
||||
du_dt.SetSubVector(ess_tdof_list, 0.0);
|
||||
|
||||
@@ -87,6 +87,8 @@
|
||||
//
|
||||
// Problem 4: level set: Union of doughnut and swiss cheese shapes
|
||||
// mpirun -np 4 distance -m ../../data/inline-hex.mesh -rs 3 -o 2 -t 1.0 -p 4
|
||||
// Problem 5: point source in mfem mesh.
|
||||
// mpirun -np 4 distance -m ../../data/mfem.mesh -p 5 -rs 3 -t 300.0
|
||||
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
@@ -233,7 +235,8 @@ int main(int argc, char *argv[])
|
||||
"1: Circle / sphere level set in 2D / 3D\n\t"
|
||||
"2: 2D sine-looking level set\n\t"
|
||||
"3: Gyroid level set in 2D or 3D\n\t"
|
||||
"4: Combo of a doughnut and swiss cheese shapes in 3D.");
|
||||
"4: Combo of a doughnut and swiss cheese shapes in 3D.\n\t"
|
||||
"5: Point source in MFEM mesh.");
|
||||
args.AddOption(&rs_levels, "-rs", "--refine-serial",
|
||||
"Number of times to refine the mesh uniformly in serial.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
@@ -299,6 +302,11 @@ int main(int argc, char *argv[])
|
||||
ls_coeff = new FunctionCoefficient(doughnut_cheese);
|
||||
smooth_steps = 0;
|
||||
}
|
||||
else if (problem == 5)
|
||||
{
|
||||
ls_coeff = new DeltaCoefficient(0.0, 0.0, 1000.0);
|
||||
smooth_steps = 0;
|
||||
}
|
||||
else { MFEM_ABORT("Unrecognized -problem option."); }
|
||||
|
||||
const real_t dx = AvgElementSize(pmesh);
|
||||
@@ -306,7 +314,7 @@ int main(int argc, char *argv[])
|
||||
if (solver_type == 0)
|
||||
{
|
||||
auto ds = new HeatDistanceSolver(t_param * dx * dx);
|
||||
if (problem == 0)
|
||||
if (problem == 0 || problem == 5)
|
||||
{
|
||||
ds->transform = false;
|
||||
}
|
||||
@@ -334,7 +342,7 @@ int main(int argc, char *argv[])
|
||||
// Smooth-out Gibbs oscillations from the input level set. The smoothing
|
||||
// parameter here is specified to be mesh dependent with length scale dx.
|
||||
ParGridFunction filt_gf(&pfes_s);
|
||||
if (problem != 0)
|
||||
if (problem != 0 && problem != 5)
|
||||
{
|
||||
real_t filter_weight = dx;
|
||||
// The normalization-based solver needs a more diffused input.
|
||||
|
||||
@@ -22,7 +22,6 @@ using namespace mfem;
|
||||
|
||||
TEST_CASE("Reduce Sum", "[Reduction],[GPU]")
|
||||
{
|
||||
Array<int> workspace;
|
||||
Array<int> a(1000);
|
||||
a.HostReadWrite();
|
||||
for (int i = 0; i < a.Size(); ++i)
|
||||
@@ -36,7 +35,7 @@ TEST_CASE("Reduce Sum", "[Reduction],[GPU]")
|
||||
int res = 0;
|
||||
mfem::reduce(
|
||||
a.Size(), res, [=] MFEM_HOST_DEVICE(int i, int &r) { r += dptr[i]; },
|
||||
SumReducer<int> {}, use_dev, workspace);
|
||||
SumReducer<int> {}, use_dev);
|
||||
// correct for even-length summations
|
||||
int expected = (AsConst(a)[0] + AsConst(a)[a.Size() - 1]) * a.Size() / 2;
|
||||
CAPTURE(use_dev);
|
||||
@@ -46,7 +45,6 @@ TEST_CASE("Reduce Sum", "[Reduction],[GPU]")
|
||||
|
||||
TEST_CASE("Reduce Mult", "[Reduction],[GPU]")
|
||||
{
|
||||
Array<long long> workspace;
|
||||
Array<long long> a(64);
|
||||
a.HostReadWrite();
|
||||
for (int i = 0; i < a.Size(); ++i)
|
||||
@@ -64,7 +62,7 @@ TEST_CASE("Reduce Mult", "[Reduction],[GPU]")
|
||||
mfem::reduce(
|
||||
a.Size(), res,
|
||||
[=] MFEM_HOST_DEVICE(int i, long long &r) { r *= dptr[i]; },
|
||||
MultReducer<long long> {}, use_dev, workspace);
|
||||
MultReducer<long long> {}, use_dev);
|
||||
long long expected = 0;
|
||||
CAPTURE(use_dev);
|
||||
REQUIRE(res == expected);
|
||||
@@ -76,7 +74,7 @@ TEST_CASE("Reduce Mult", "[Reduction],[GPU]")
|
||||
mfem::reduce(
|
||||
a.Size(), res,
|
||||
[=] MFEM_HOST_DEVICE(int i, long long &r) { r *= dptr[i]; },
|
||||
MultReducer<long long> {}, use_dev, workspace);
|
||||
MultReducer<long long> {}, use_dev);
|
||||
long long expected = 21936950640377856;
|
||||
CAPTURE(use_dev);
|
||||
REQUIRE(res == expected);
|
||||
@@ -86,7 +84,6 @@ TEST_CASE("Reduce Mult", "[Reduction],[GPU]")
|
||||
|
||||
TEST_CASE("Reduce BAnd", "[Reduction],[GPU]")
|
||||
{
|
||||
Array<unsigned> workspace;
|
||||
Array<unsigned> a(10);
|
||||
SECTION("{ Bit unset }")
|
||||
{
|
||||
@@ -108,7 +105,7 @@ TEST_CASE("Reduce BAnd", "[Reduction],[GPU]")
|
||||
mfem::reduce(
|
||||
a.Size(), res,
|
||||
[=] MFEM_HOST_DEVICE(int i, unsigned &r) { r &= dptr[i]; },
|
||||
BAndReducer<unsigned> {}, use_dev, workspace);
|
||||
BAndReducer<unsigned> {}, use_dev);
|
||||
CAPTURE(use_dev);
|
||||
REQUIRE(res == ((~1u) & ~(1u << unset_bit)));
|
||||
REQUIRE((res & (1u << unset_bit)) == 0);
|
||||
@@ -132,7 +129,7 @@ TEST_CASE("Reduce BAnd", "[Reduction],[GPU]")
|
||||
mfem::reduce(
|
||||
a.Size(), res,
|
||||
[=] MFEM_HOST_DEVICE(int i, unsigned &r) { r &= dptr[i]; },
|
||||
BAndReducer<unsigned> {}, use_dev, workspace);
|
||||
BAndReducer<unsigned> {}, use_dev);
|
||||
CAPTURE(use_dev);
|
||||
REQUIRE(res == (1u << set_bit));
|
||||
}
|
||||
@@ -141,7 +138,6 @@ TEST_CASE("Reduce BAnd", "[Reduction],[GPU]")
|
||||
|
||||
TEST_CASE("Reduce BOr", "[Reduction],[GPU]")
|
||||
{
|
||||
Array<unsigned> workspace;
|
||||
Array<unsigned> a(0x210);
|
||||
a.HostReadWrite();
|
||||
for (int i = 0; i < a.Size(); ++i)
|
||||
@@ -157,7 +153,7 @@ TEST_CASE("Reduce BOr", "[Reduction],[GPU]")
|
||||
mfem::reduce(
|
||||
a.Size(), res,
|
||||
[=] MFEM_HOST_DEVICE(int i, unsigned &r) { r |= dptr[i]; },
|
||||
BOrReducer<unsigned> {}, use_dev, workspace);
|
||||
BOrReducer<unsigned> {}, use_dev);
|
||||
CAPTURE(use_dev);
|
||||
REQUIRE(res == 0x3ffu);
|
||||
}
|
||||
@@ -165,7 +161,6 @@ TEST_CASE("Reduce BOr", "[Reduction],[GPU]")
|
||||
|
||||
TEST_CASE("Reduce Min", "[Reduction],[GPU]")
|
||||
{
|
||||
Array<int> workspace;
|
||||
Array<int> a(1000);
|
||||
auto hptr = a.HostReadWrite();
|
||||
for (int i = 0; i < a.Size(); ++i)
|
||||
@@ -190,7 +185,7 @@ TEST_CASE("Reduce Min", "[Reduction],[GPU]")
|
||||
r = dptr[i];
|
||||
}
|
||||
},
|
||||
MinReducer<int> {}, use_dev, workspace);
|
||||
MinReducer<int> {}, use_dev);
|
||||
CAPTURE(use_dev);
|
||||
REQUIRE(res == -10);
|
||||
}
|
||||
@@ -198,7 +193,6 @@ TEST_CASE("Reduce Min", "[Reduction],[GPU]")
|
||||
|
||||
TEST_CASE("Reduce Max", "[Reduction],[GPU]")
|
||||
{
|
||||
Array<int> workspace;
|
||||
Array<int> a(1000);
|
||||
auto hptr = a.HostReadWrite();
|
||||
for (int i = 0; i < a.Size(); ++i)
|
||||
@@ -223,7 +217,7 @@ TEST_CASE("Reduce Max", "[Reduction],[GPU]")
|
||||
r = dptr[i];
|
||||
}
|
||||
},
|
||||
MaxReducer<int> {}, use_dev, workspace);
|
||||
MaxReducer<int> {}, use_dev);
|
||||
CAPTURE(use_dev);
|
||||
REQUIRE(res == 999 - 10);
|
||||
}
|
||||
@@ -231,7 +225,6 @@ TEST_CASE("Reduce Max", "[Reduction],[GPU]")
|
||||
|
||||
TEST_CASE("Reduce MinMax", "[Reduction],[GPU]")
|
||||
{
|
||||
Array<DevicePair<int, int>> workspace;
|
||||
Array<int> a(1000);
|
||||
auto hptr = a.HostReadWrite();
|
||||
for (int i = 0; i < a.Size(); ++i)
|
||||
@@ -262,7 +255,7 @@ TEST_CASE("Reduce MinMax", "[Reduction],[GPU]")
|
||||
r.second = dptr[i];
|
||||
}
|
||||
},
|
||||
MinMaxReducer<int> {}, use_dev, workspace);
|
||||
MinMaxReducer<int> {}, use_dev);
|
||||
CAPTURE(use_dev);
|
||||
REQUIRE(res.first == -10);
|
||||
REQUIRE(res.second == a.Size() - 11);
|
||||
@@ -271,7 +264,6 @@ TEST_CASE("Reduce MinMax", "[Reduction],[GPU]")
|
||||
|
||||
TEST_CASE("Reduce ArgMin", "[Reduction],[GPU]")
|
||||
{
|
||||
Array<DevicePair<double, int>> workspace;
|
||||
Array<double> a(1000);
|
||||
auto hptr = a.HostReadWrite();
|
||||
for (int i = 0; i < a.Size(); ++i)
|
||||
@@ -297,7 +289,7 @@ TEST_CASE("Reduce ArgMin", "[Reduction],[GPU]")
|
||||
r.second = i;
|
||||
}
|
||||
},
|
||||
ArgMinReducer<double, int> {}, use_dev, workspace);
|
||||
ArgMinReducer<double, int> {}, use_dev);
|
||||
CAPTURE(use_dev);
|
||||
REQUIRE(res.first == -10);
|
||||
REQUIRE(res.second >= 0);
|
||||
@@ -308,7 +300,6 @@ TEST_CASE("Reduce ArgMin", "[Reduction],[GPU]")
|
||||
|
||||
TEST_CASE("Reduce ArgMax", "[Reduction],[GPU]")
|
||||
{
|
||||
Array<DevicePair<double, int>> workspace;
|
||||
Array<double> a(1000);
|
||||
|
||||
auto hptr = a.HostReadWrite();
|
||||
@@ -337,7 +328,7 @@ TEST_CASE("Reduce ArgMax", "[Reduction],[GPU]")
|
||||
r.second = i;
|
||||
}
|
||||
},
|
||||
ArgMaxReducer<double, int> {}, use_dev, workspace);
|
||||
ArgMaxReducer<double, int> {}, use_dev);
|
||||
CAPTURE(use_dev);
|
||||
REQUIRE(res.first == a.Size() - 11);
|
||||
REQUIRE(res.second >= 0);
|
||||
@@ -348,7 +339,6 @@ TEST_CASE("Reduce ArgMax", "[Reduction],[GPU]")
|
||||
|
||||
TEST_CASE("Reduce ArgMinMax", "[Reduction],[GPU]")
|
||||
{
|
||||
Array<MinMaxLocScalar<double, int>> workspace;
|
||||
Array<double> a(1000);
|
||||
auto hptr = a.HostReadWrite();
|
||||
for (int i = 0; i < a.Size(); ++i)
|
||||
@@ -383,7 +373,7 @@ TEST_CASE("Reduce ArgMinMax", "[Reduction],[GPU]")
|
||||
r.max_loc = i;
|
||||
}
|
||||
},
|
||||
ArgMinMaxReducer<double, int> {}, use_dev, workspace);
|
||||
ArgMinMaxReducer<double, int> {}, use_dev);
|
||||
CAPTURE(use_dev);
|
||||
REQUIRE(res.min_val == -10);
|
||||
REQUIRE(res.min_loc >= 0);
|
||||
|
||||
@@ -373,6 +373,7 @@ TEST_CASE("Batched Linear Algebra",
|
||||
const int n_rhs = 2;
|
||||
|
||||
DenseTensor A_batch(n, n, n_mat);
|
||||
DenseTensor A_inv_batch(n, n, n_mat);
|
||||
Vector x_batch(n * n_rhs * n_mat), y_batch(n * n_rhs * n_mat);
|
||||
std::vector<DenseMatrix> As;
|
||||
std::vector<DenseMatrix> xs, ys;
|
||||
@@ -404,6 +405,7 @@ TEST_CASE("Batched Linear Algebra",
|
||||
ys.back() = 0.0;
|
||||
AddMult_a(1.5, As.back(), xs.back(), ys.back());
|
||||
A_batch(i) = As.back();
|
||||
A_inv_batch(i) = As.back();
|
||||
}
|
||||
|
||||
// Test batched matrix-vector products
|
||||
@@ -463,6 +465,33 @@ TEST_CASE("Batched Linear Algebra",
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Test batched matrix inverse
|
||||
BatchedLinAlg::Get(backend).Invert(A_inv_batch);
|
||||
A_inv_batch.HostReadWrite();
|
||||
Vector output_col(n);
|
||||
Vector col;
|
||||
for (int i = 0; i < n_mat; ++i)
|
||||
{
|
||||
DenseMatrix Ai_inv(A_inv_batch(i));
|
||||
for (int j = 0; j < n; ++j)
|
||||
{
|
||||
output_col = 0.0;
|
||||
As[i].GetColumnReference(j, col);
|
||||
Ai_inv.Mult(col, output_col);
|
||||
for (int k = 0; k < n; ++k)
|
||||
{
|
||||
if (j == k)
|
||||
{
|
||||
REQUIRE(output_col(k) == MFEM_Approx(1.0));
|
||||
}
|
||||
else
|
||||
{
|
||||
REQUIRE(output_col(k) == MFEM_Approx(0.0));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
TEST_CASE("DenseTensor copy", "[DenseMatrix][DenseTensor]")
|
||||
|
||||
@@ -240,4 +240,54 @@ TEST_CASE("SparseMatrix printing", "[SparseMatrix]")
|
||||
}
|
||||
}
|
||||
|
||||
TEST_CASE("SparseMatrix cuSPARSE Bug", "[SparseMatrix][GPU]")
|
||||
{
|
||||
// This test case ensures that we have a functioning workaround for the bug
|
||||
// CUSPARSE-1897. In versions of cuSPARSE before 12.8, the internal buffer
|
||||
// used for cusparseSpMV must be the same when it is called with the same
|
||||
// matrix.
|
||||
//
|
||||
// By default, MFEM uses one buffer, that is shared by all sparse matrices.
|
||||
// In the code below, a buffer is created for A, then modified for B, then
|
||||
// used again for A. Without the workaround, this fails with cuSPARSE version
|
||||
// earlier than 12.8 (confirmed to fail with 12.4).
|
||||
|
||||
const int n = 100;
|
||||
SparseMatrix A(n, n);
|
||||
Vector d(n);
|
||||
d.Randomize(1);
|
||||
for (int i = 0; i < n; ++i)
|
||||
{
|
||||
A.Set(i, i, d[i]);
|
||||
}
|
||||
A.Finalize();
|
||||
|
||||
Vector x(n);
|
||||
x = 1.0;
|
||||
|
||||
Vector y(n);
|
||||
A.Mult(x, y);
|
||||
|
||||
{
|
||||
SparseMatrix B(20, 20);
|
||||
for (int i = 0; i < 20; ++i)
|
||||
{
|
||||
for (int j = 0; j < 20; ++j)
|
||||
{
|
||||
B.Set(i, j, 1.0);
|
||||
}
|
||||
}
|
||||
B.Finalize();
|
||||
Vector u(20);
|
||||
u = 1.0;
|
||||
Vector v(20);
|
||||
B.Mult(u, v);
|
||||
}
|
||||
|
||||
A.Mult(x, y);
|
||||
|
||||
y -= d;
|
||||
REQUIRE(y.Normlinf() == MFEM_Approx(0.0));
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
Reference in New Issue
Block a user