Compare commits

..
Author SHA1 Message Date
Will Pazner cd1485a62f Add some comments 2022-02-02 16:52:25 -08:00
Will Pazner 0ba282bc62 Do BCs on device with device-aware MPI 2022-02-02 16:05:45 -08:00
camierjs 855f53f83b gitignore update 2022-01-26 10:38:09 -08:00
camierjs aee6993f12 Merge master in bps 2022-01-22 08:11:24 -08:00
camierjs 93acff80ff MPI consol reporter fix & setup params 2022-01-22 08:10:58 -08:00
camierjs 13567886cd Params & remove inner_cg 2021-12-30 17:23:47 -08:00
camierjs 9b164c8122 Device run fix & params tuning 2021-12-29 17:21:55 -08:00
camierjs 344575476a LOR assembly parallel columns elimination fix & NodalInterpolation vector un-static 2021-12-29 15:11:11 -08:00
camierjs 17d11ffde8 AppVeyor constant evaluation expression 2021-12-29 13:50:26 -08:00
camierjs 4a0a785a22 Remove restricts for AppVeyor 2021-12-29 13:23:55 -08:00
camierjs 0d22cbe482 AppVeyor fix 2021-12-29 12:54:49 -08:00
camierjs f922849049 Remove MFEM_UNROLL to avoid optimizer message it was unable to perform the requested transformation 2021-12-29 12:37:41 -08:00
camierjs 0705abaa17 Remove CuSparse init hidden in Dof_TrueDof_Matrix 2021-12-29 12:04:59 -08:00
camierjs be6f6823a0 nxyz partitioning & GLVis output 2021-12-28 12:01:34 -08:00
camierjs 1bb502acb5 Fix partitioning & tune parameters 2021-12-24 13:45:03 -08:00
camierjs 3cd073df96 cmake files fix 2021-12-23 16:49:02 -08:00
camierjs 6032edcb0f Warnings being treated as errors 2021-12-23 16:23:16 -08:00
camierjs d538a0e936 LOR warnings 2021-12-23 16:14:19 -08:00
camierjs 189e4f2bd1 Warnings & documentation 2021-12-23 16:08:10 -08:00
camierjs 123cfee0d0 Add <limits.h> 2021-12-23 14:16:40 -08:00
camierjs 52328a7051 Cleanup, Sync & serial support 2021-12-23 14:06:48 -08:00
camierjs 9584b34d74 Add missing cstring header 2021-12-23 10:10:47 -08:00
camierjs e68b5a8200 Add fem/lor_assembly_ni3.cpp and use GPU kernels for BC elimination 2021-12-22 15:17:39 -08:00
camierjs 1203651bfb Add MFEM_UNROLL foldback 2021-12-19 18:23:20 -08:00
camierjs b7835fa392 Merge master in bps 2021-12-19 09:20:25 -08:00
camierjs ac2e4838d1 Add fine BoomerAMG 2021-12-17 09:24:18 -08:00
camierjs 5c5c8aa645 Switched to sides 2021-12-16 12:31:35 -08:00
camierjs 3bf4235280 Faster transfers 2021-12-12 17:23:55 -08:00
camierjs f31abd53c4 Diffusion fix, hyper-parameters tuning 2021-12-10 17:48:05 -08:00
camierjs 40e80d6861 Fast transfers and diffusion kernels 2021-12-10 13:51:23 -08:00
camierjs e4de905322 Merge branch 'amd' into bps 2021-12-09 11:08:20 -08:00
camierjs 8cf20ff650 nvtx cleanup 2021-12-09 10:10:42 -08:00
camierjs 51e634777d Benchmark context factorize and setup time fix 2021-12-09 09:19:12 -08:00
camierjs faf9821920 All tests: LOR, GPU, MPI & Wavelets 2021-12-08 18:42:01 -08:00
camierjs 82c1fe1f5a Fix one coeff 2021-12-08 14:09:48 -08:00
camierjs 4f97798591 Add fine LOR batch GPU 2021-12-08 13:16:07 -08:00
camierjs f264e3ff29 Add LOR batched GPU 2021-12-08 12:00:03 -08:00
camierjs 7e283840dc Merge branch 'lor-batched-gpu' into bps 2021-12-08 11:17:48 -08:00
camierjs 3a82eaf76f Bring linext and switch b to use FULL LinearAssemblyLevel 2021-12-08 11:13:28 -08:00
camierjs 8e03705911 Merge branch 'linext' into bps 2021-12-08 11:03:29 -08:00
camierjs 99e39c03c3 nvtx setup 2021-12-08 11:00:58 -08:00
camierjs c9935c4c98 Merge master in amd 2021-12-08 08:12:40 -08:00
camierjs 1e39adaf0d Merge master in bps 2021-12-08 08:12:22 -08:00
camierjs 0d968ca140 Initial import 2021-11-19 15:01:14 -08:00
camierjs 404d7bda1e Merge master in amd 2021-11-07 07:58:03 -08:00
camierjs 32a6d747d0 Add sweeping CEED benchmarks and tex file 2021-11-06 15:11:36 -07:00
camierjs 9f0c12aa3b Style 2021-11-06 10:05:54 -07:00
camierjs 695997c8f8 Merge master in amd 2021-11-06 10:03:16 -07:00
camierjs 35ebe4270b Merge master in amd 2021-10-30 10:41:04 -07:00
camierjs a6d8b0dd3f Fix AppVeyor restrict errors - bis 2021-10-13 10:55:26 -07:00
camierjs f134a17870 Fix AppVeyor restrict errors 2021-10-11 10:23:27 -07:00
camierjs 442e172793 Add fem/bilininteg_mass_pa_fast_hip.cpp kernels 2021-10-11 09:57:33 -07:00
camierjs b5598d192f Merge master in amd 2021-10-11 08:39:32 -07:00
camierjs 50332ea9cc Merge master in amd 2021-09-28 07:33:25 -07:00
camierjs 1ded8554ea Merge master in amd 2021-09-15 10:00:30 -07:00
camierjs 8224e0f25d Merge master in amd 2021-09-13 09:11:32 -07:00
camierjs 3eb542f60c Merge master in amd 2021-09-07 07:55:29 -07:00
camierjs 26eac83243 Merge master in amd 2021-09-02 08:57:05 -07:00
camierjs 4e23f9d936 Merge master in amd 2021-08-25 09:05:42 -07:00
camierjs 2965eda686 Merge master in amd 2021-08-20 14:21:47 -07:00
camierjs 8dc690f8f9 Add Z-batch to fast kernels 2021-08-20 11:55:59 -07:00
camierjs f4355af2fc Revert file fem/bilininteg_mass_pa_diag.cpp 2021-08-20 10:26:00 -07:00
camierjs a11e6a43bc Fix variable rename and extra file 2021-08-20 10:19:14 -07:00
camierjs dacb681df0 Meld toward master 2021-08-20 10:10:46 -07:00
camierjs d61ebf5ff5 Merge master in amd 2021-08-20 08:34:40 -07:00
camierjs bf40b4d55e Remove deprecated calls 2021-08-13 16:14:14 -07:00
camierjs 36fee9505d Fix unused variable 2021-08-13 16:10:33 -07:00
camierjs 3399eab433 Remove include debug header 2021-08-13 15:58:07 -07:00
camierjs 8adfdcd003 Propagate changes 2021-08-13 15:42:26 -07:00
camierjs 491d4427f5 Merge master in amd 2021-08-13 15:31:46 -07:00
camierjs 33aece48c2 Action type for mass kernels 2021-08-13 15:31:27 -07:00
camierjs e421e95c31 Add integrator KernelType logic to handle hybrid E2E (default) and L2L (non-deterministic) kernels 2021-08-12 11:24:17 -07:00
camierjs ca4b4c2e4d Split fem/bilininteg_mass_pa into fem/bilininteg_mass_pa_diag 2021-08-11 10:10:39 -07:00
camierjs d2834d37af Renamea 'ndk' to 'fast' and add AMD specific file with 'fast3' shortcut 2021-08-11 10:02:01 -07:00
camierjs ae9e67e8c2 3 fast kernels 2021-08-10 14:43:33 -07:00
camierjs baff2dc287 Fix variable name 2021-08-05 10:00:27 -07:00
camierjs 958dfc066e Add fast kernel version number 2021-08-05 09:52:11 -07:00
camierjs a9fa288c20 Merge master in amd 2021-08-04 18:35:35 -07:00
camierjs dd70a615e3 Rename to NDK (Non Deterministic Kernels)
Add 'Regs' kernels which use less shared memory
2021-08-04 18:33:56 -07:00
camierjs 4b79037a7d Merge master in amd 2021-07-26 10:41:54 -07:00
camierjs 3572db4761 Rename AMD => NonDeterministicKernels 2021-07-26 10:41:34 -07:00
camierjs 0f0d7eba52 Laghos kernels 2021-07-16 11:10:14 -07:00
camierjs 5ecd76cd26 Laghos addon 2021-07-16 10:44:40 -07:00
camierjs d10e5c5bc8 Merge master in amd 2021-07-15 14:20:47 -07:00
camierjs c2bd05b8f3 Change AMD_PAMassApply forward declaration for AppVeyor 2021-07-14 15:40:54 -07:00
camierjs c00e8a33c7 Remove restrict for AppVeyor 2021-07-14 15:01:51 -07:00
camierjs 9f13c8d574 Update fem/CMakeLists.txt 2021-07-14 14:35:50 -07:00
camierjs 0f8f3d714e Initial ex1/mass setup through AMD environment variable 2021-07-14 14:19:13 -07:00
995 changed files with 30352 additions and 87083 deletions
+6 -17
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@@ -1,13 +1,10 @@
version: '{build}'
# https://www.appveyor.com/docs/build-environment/#build-worker-images
image: Visual Studio 2019
image: Visual Studio 2017
install:
# Start from outside clone directory
- cd ..
# Install MS-MPI
- ps: Start-FileDownload 'https://download.microsoft.com/download/B/2/E/B2EB83FE-98C2-4156-834A-E1711E6884FB/MSMpiSetup.exe'
- MSMpiSetup.exe -unattend
@@ -18,13 +15,9 @@ install:
- msmpisdk.msi /passive
- set PATH=C:\Program Files\Microsoft MPI\Bin;%PATH%
# Set MSMPI environment variables needed for CMake detection
- set MSMPI_LIB32=C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86
- set MSMPI_LIB64=C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x64
- set MSMPI_INC=C:\Program Files (x86)\Microsoft SDKs\MPI\Include
# Install METIS, use MFEM's mirror because the original source server is often
# down and we don't support yet the new repo https://github.com/KarypisLab/METIS
# Install METIS, use a mirror because the original source server is not always
# up. Original url:
# http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz
- ps: Start-FileDownload 'https://mfem.github.io/tpls/metis-5.1.0.tar.gz'
- 7z x metis-5.1.0.tar.gz -so | 7z x -si -ttar > nul
- cd metis-5.1.0
@@ -32,24 +25,20 @@ install:
- cmake -H. -Bbuild
# -DCMAKE_BUILD_TYPE=Release
- cmake --build build
- set METIS_PATH=%cd%
- cd ..
# Install hypre
- ps: Start-FileDownload 'https://github.com/hypre-space/hypre/archive/v2.19.0.tar.gz'
- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
- cd hypre-2.19.0/src
- cmake -H. -Bbuild
- cmake -H. -Bbuild -DMPI_C_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DMPI_C_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include"
- cmake --build build
- cmake --build build --target install
- cd ../..
# Return to clone directory
- cd %APPVEYOR_BUILD_FOLDER%
# MFEM
before_build:
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DMPI_CXX_LIBRARIES="C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86\msmpi.lib" -DMPI_CXX_INCLUDE_PATH="C:\Program Files (x86)\Microsoft SDKs\MPI\Include" -DHYPRE_DIR=%cd%\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%cd%\metis-5.1.0\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%cd%\metis-5.1.0\include
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
build_script:
+1 -1
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@@ -5,7 +5,7 @@ channels:
dependencies:
- xeus-cling=0.13.0
- xwidgets=0.26.0
# NOTE: it is possible that these are not needed for the lab frontend
# NOTE: it's possible these aren't needed for the lab frontend
- widgetsnbextension=3.5.1
- pip
- pip:
-48
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@@ -1,48 +0,0 @@
Finite Element Discretization Library
__
_ __ ___ / _| ___ _ __ ___
| '_ ` _ \ | |_ / _ \| '_ ` _ \
| | | | | || _|| __/| | | | | |
|_| |_| |_||_| \___||_| |_| |_|
https://mfem.org
This directory contains the GitHub CI scripts for MFEM.
Note that some of these scripts use the shared MFEM GitHub Actions from the external mfem/github-actions repository:
https://github.com/mfem/github-actions
For a particular action, e.g. `mfem/github-actions/build-mfem@v2.1`, the `v2.1` suffix denotes the branch in the above from which the action is taken.
The current CI workflows are:
### `repo-check.yml`
Runs a number of static repository-level sanity checks.
- `file-headers-check` checks copyright date, license, etc. using the `--copyright`, `--license` and `--release` options of the `config/githooks/pre-push` script.
- `code-style` checks the code style using the `--style` option of the `config/githooks/pre-push` script.
- `documentation` checks the documentation build using the `tests/scripts/documentation` script.
- `branch-history` guards against accidental commits of large files using the `--history` option of the `config/githooks/pre-push` script.
### `mfem-analysis.yml` (`build-analysis`)
Checks if the code builds and satisfies minimal requirements.
- `gitignore` builds hypre, METIS, and MFEM using `mfem/github-actions/build-hypre`, `mfem/github-actions/build-metis`, and `mfem/github-actions/build-mfem` and checks for correct `.gitignore` settings by running the `tests/scripts/gitignore` script.
### `builds-and-tests.yml`
Runs a matrix of builds and tests runs with different compilers, OS, mfem/hypre settings, etc. Also processes and upload Codecov reports.
Uses the following GitHub Actions from https://github.com/mfem/github-actions:
- `mfem/github-actions/build-hypre`
- `mfem/github-actions/build-metis`
- `mfem/github-actions/build-mfem`
- `mfem/github-actions/upload-coverage`
-82
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@@ -1,82 +0,0 @@
name: "Docker"
on:
# Always have a base image ready to go - this is a nightly build
schedule:
- cron: 0 3 * * *
# Allow manual trigger of a build
workflow_dispatch:
# On push to main we build and deploy images
push:
branches:
- master
# Publish packages on release
release:
types: [published]
jobs:
build:
if: github.repository == 'mfem/mfem' # Don't run in forks
permissions:
packages: write
strategy:
fail-fast: false
matrix:
# Dockerfiles to build, a matrix supports future expanded builds
container: [["config/docker/Dockerfile.base", "ghcr.io/mfem/mfem-ubuntu-base"],
["config/docker/Dockerfile", "ghcr.io/mfem/mfem-ubuntu"]]
runs-on: ubuntu-latest
name: Build
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Make Space For Build
run: |
sudo rm -rf /usr/share/dotnet
sudo rm -rf /opt/ghc
# It's easier to reference named variables than indexes of the matrix
- name: Set Environment
env:
dockerfile: ${{ matrix.container[0] }}
uri: ${{ matrix.container[1] }}
run: |
echo "dockerfile=$dockerfile" >> $GITHUB_ENV
echo "uri=$uri" >> $GITHUB_ENV
- name: Pull previous layers for cache
run: docker pull ${uri}:latest || echo "No container to pull"
- name: Build Container
run: |
container=$uri:latest
docker build -f ${dockerfile} -t ${container} .
echo "container=$container" >> $GITHUB_ENV
- name: GHCR Login
if: (github.event_name != 'pull_request')
uses: docker/login-action@v2
with:
registry: ghcr.io
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}
- name: Deploy
if: (github.event_name != 'pull_request')
run: |
docker push ${container}
- name: Tag and Push Release
if: (github.event_name == 'release')
run: |
tag=${GITHUB_REF#refs/tags/}
echo "Tagging and releasing ${uri}:${tag}"
docker tag ${uri}:latest ${uri}:${tag}
docker push ${uri}:${tag}
+37 -98
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -10,7 +10,7 @@
# CONTRIBUTING.md for details.
# In this CI section, we build different variants of mfem and run test on them.
name: "Tests"
name: builds-and-tests
# Github actions can use the default "GITHUB_TOKEN". By default, this token
# is set to have permissive access. However, this is not a good practice
@@ -27,7 +27,6 @@ on:
- master
- next
pull_request:
workflow_dispatch:
env:
HYPRE_ARCHIVE: v2.19.0.tar.gz
@@ -47,18 +46,11 @@ jobs:
builds-and-tests:
strategy:
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
os: [ubuntu-18.04, macos-10.15]
target: [dbg, opt]
mpi: [seq, par]
build-system: [make, cmake]
build-system: [make]
hypre-target: [int32]
exclude:
- os: ubuntu-latest
build-system: cmake
- os: macos-latest
build-system: cmake
- os: windows-latest
build-system: make
# 'include' allows us to:
# - Add a variable to all jobs without creating a new matrix dimension.
# Codecov is defined that way.
@@ -72,15 +64,13 @@ jobs:
codecov: NO
- target: opt
codecov: YES
- os: windows-latest
codecov: NO
- os: ubuntu-latest
- os: ubuntu-18.04
target: opt
codecov: NO
mpi: par
build-system: cmake
hypre-target: int32
- os: ubuntu-latest
- os: ubuntu-18.04
target: opt
codecov: NO
mpi: par
@@ -94,7 +84,7 @@ jobs:
# This external action allows to interrupt a workflow already running on
# the same branch to save resource
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.11.0
uses: styfle/cancel-workflow-action@0.9.0
with:
access_token: ${{ github.token }}
@@ -102,7 +92,7 @@ jobs:
# /home/runner/work/mfem/mfem/mfem
# Note: Done now to access "install-hypre" and "install-metis" actions.
- name: checkout mfem
uses: actions/checkout@v3
uses: actions/checkout@v2
with:
path: ${{ env.MFEM_TOP_DIR }}
# Fetch the complete history for codecov to access commits ID
@@ -112,107 +102,71 @@ jobs:
# TODO: It would be nice to have only one step, e.g. with a dedicated
# action, but I (@adrienbernede) don't see how at the moment.
- name: get MPI (Linux)
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-latest'
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-18.04'
run: |
sudo apt-get install mpich libmpich-dev
export MAKE_CXX_FLAG="MPICXX=mpic++"
- name: get lcov (Linux)
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-latest'
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-18.04'
run: |
sudo apt-get install lcov
# Keep the following section in case we need it again in the future,
# see: https://github.com/mfem/mfem/pull/3385#discussion_r1058013032
# - name: Set up Homebrew
# if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-latest'
# uses: Homebrew/actions/setup-homebrew@master
- name: Set up Homebrew
if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-10.15'
uses: Homebrew/actions/setup-homebrew@c4aafe8c4620bf08883dd4679c374f11e73329d3
- name: get MPI (MacOS)
if: matrix.mpi == 'par' && matrix.os == 'macos-latest'
if: matrix.mpi == 'par' && matrix.os == 'macos-10.15'
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew install openmpi
export MAKE_CXX_FLAG="MPICXX=mpic++"
- name: get lcov (MacOS)
if: matrix.codecov == 'YES' && matrix.os == 'macos-latest'
- name: get MPI (MacOS)
if: matrix.codecov == 'YES' && matrix.os == 'macos-10.15'
run: |
export HOMEBREW_NO_INSTALL_CLEANUP=1
brew install lcov
- name: get MPI (Windows)
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
uses: mpi4py/setup-mpi@v1.1.4
# Get Hypre through cache, or build it.
# Install will only run on cache miss.
- name: cache hypre
id: hypre-cache
if: matrix.mpi == 'par'
uses: actions/cache@v3
uses: actions/cache@v2
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.0
- name: get hypre
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.2
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.0
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: ${{ matrix.hypre-target }}
build-system: make
- name: get hypre (Windows)
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
uses: mfem/github-actions/build-hypre@v2.2
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
target: ${{ matrix.hypre-target }}
build-system: cmake
# Get Metis through cache, or build it.
# Install will only run on cache miss.
- name: cache metis
id: metis-cache
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
uses: actions/cache@v3
if: matrix.mpi == 'par'
uses: actions/cache@v2
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.0
- name: install metis
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.2
if: matrix.mpi == 'par' && steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.0
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
- name: cache vcpkg (Windows)
id: vcpkg-cache
if: matrix.os == 'windows-latest'
uses: actions/cache@v3
with:
path: vcpkg_cache
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
- name: prepare vcpkg binary cache location (Windows)
if: matrix.os == 'windows-latest' && steps.vcpkg-cache.outputs.cache-hit != 'true'
run: |
mkdir -p vcpkg_cache
- name: install metis (Windows)
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
run: |
vcpkg install metis-mfem --triplet=x64-windows-static --overlay-ports=${{ env.MFEM_TOP_DIR }}/config/vcpkg/ports
# MFEM build and test
- name: build
uses: mfem/github-actions/build-mfem@v2.2
env:
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
uses: mfem/github-actions/build-mfem@v2.0
with:
os: ${{ matrix.os }}
target: ${{ matrix.target }}
@@ -222,8 +176,6 @@ jobs:
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
metis-dir: ${{ env.METIS_TOP_DIR }}
mfem-dir: ${{ env.MFEM_TOP_DIR }}
config-options: ${{ env.MFEM_EXTRA_CONFIG }}
library-only: ${{ matrix.target == 'dbg' }}
# Run checks (and only checks) on debug targets
- name: checks
@@ -231,38 +183,25 @@ jobs:
run: |
cd ${{ env.MFEM_TOP_DIR }} && make check
# Note: 'tests' include the unit tests
- name: unit tests
if: matrix.build-system == 'make' && matrix.target == 'opt'
run: |
cd ${{ env.MFEM_TOP_DIR }} && make unittest
- name: tests
if: matrix.build-system == 'make' && matrix.target == 'opt'
run: |
cd ${{ env.MFEM_TOP_DIR }} && make test
- name: cmake checks
if: matrix.build-system == 'cmake' && matrix.target == 'dbg'
- name: cmake unit tests
if: matrix.build-system == 'cmake'
run: |
CTEST_CONFIG="Debug"
cd ${{ env.MFEM_TOP_DIR }} && cmake --build build --target check --config ${CTEST_CONFIG}
shell: bash
- name: cmake unit tests (Ubuntu)
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
[[ ${{ matrix.target }} == 'dbg' ]] && CTEST_CONFIG="Debug"
cd ${{ env.MFEM_TOP_DIR }}/build/tests/unit && ctest --output-on-failure -C ${CTEST_CONFIG}
shell: bash
- name: cmake tests
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
run: |
CTEST_CONFIG="Release"
cd ${{ env.MFEM_TOP_DIR }}/build && ctest --output-on-failure -C ${CTEST_CONFIG}
shell: bash
cd ${{ env.MFEM_TOP_DIR }}/build/tests/unit && ctest --output-on-failure
# Code coverage (process and upload reports)
- name: codecov
if: matrix.codecov == 'YES'
uses: mfem/github-actions/upload-coverage@v2.2
uses: mfem/github-actions/upload-coverage@v2.0
with:
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
project_dir: ${{ env.MFEM_TOP_DIR }}
-70
View File
@@ -1,70 +0,0 @@
# For most projects, this workflow file will not need changing; you simply need
# to commit it to your repository.
#
# You may wish to alter this file to override the set of languages analyzed,
# or to provide custom queries or build logic.
#
# ******** NOTE ********
# We have attempted to detect the languages in your repository. Please check
# the `language` matrix defined below to confirm you have the correct set of
# supported CodeQL languages.
#
name: "Static Analysis"
on:
push:
branches: [ "master", "next"]
pull_request:
# The branches below must be a subset of the branches above
branches: [ "master" ]
jobs:
analyze:
name: Analyze
runs-on: ubuntu-latest
permissions:
actions: read
contents: read
security-events: write
strategy:
fail-fast: false
matrix:
language: [ 'cpp' ]
# CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ]
# Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
steps:
- name: Checkout repository
uses: actions/checkout@v3
# Initializes the CodeQL tools for scanning.
- name: Initialize CodeQL
uses: github/codeql-action/init@v2
with:
languages: ${{ matrix.language }}
# If you wish to specify custom queries, you can do so here or in a config file.
# By default, queries listed here will override any specified in a config file.
# Prefix the list here with "+" to use these queries and those in the config file.
# Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
# queries: security-extended,security-and-quality
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
# If this step fails, then you should remove it and run the build manually (see below)
- name: Autobuild
uses: github/codeql-action/autobuild@v2
# ️ Command-line programs to run using the OS shell.
# 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
# If the Autobuild fails above, remove it and uncomment the following three lines.
# modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
# - run: |
# echo "Run, Build Application using script"
# ./location_of_script_within_repo/buildscript.sh
- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v2
+13 -13
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -9,7 +9,7 @@
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
name: "Build Analysis"
name: build-analysis
permissions:
actions: write
@@ -20,7 +20,6 @@ on:
- master
- next
pull_request:
workflow_dispatch:
env:
HYPRE_ARCHIVE: v2.19.0.tar.gz
@@ -31,33 +30,34 @@ env:
jobs:
gitignore:
runs-on: ubuntu-latest
runs-on: ubuntu-18.04
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.11.0
uses: styfle/cancel-workflow-action@0.9.0
with:
access_token: ${{ github.token }}
- name: checkout MFEM
uses: actions/checkout@v3
uses: actions/checkout@v2
with:
path: mfem
- name: Get MPI (Linux)
run: |
sudo apt-get install mpich libmpich-dev
export MAKE_CXX_FLAG="MPICXX=mpic++"
- name: Cache Hypre Install
id: hypre-cache
uses: actions/cache@v3
uses: actions/cache@v2
with:
path: ${{ env.HYPRE_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.2
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.0
- name: Get Hypre
if: steps.hypre-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-hypre@v2.2
uses: mfem/github-actions/build-hypre@v2.0
with:
archive: ${{ env.HYPRE_ARCHIVE }}
dir: ${{ env.HYPRE_TOP_DIR }}
@@ -65,21 +65,21 @@ jobs:
- name: Cache Metis Install
id: metis-cache
uses: actions/cache@v3
uses: actions/cache@v2
with:
path: ${{ env.METIS_TOP_DIR }}
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.0
- name: Install Metis
if: steps.metis-cache.outputs.cache-hit != 'true'
uses: mfem/github-actions/build-metis@v2.2
uses: mfem/github-actions/build-metis@v2.0
with:
archive: ${{ env.METIS_ARCHIVE }}
dir: ${{ env.METIS_TOP_DIR }}
# MFEM build and test
- name: build-mfem
uses: mfem/github-actions/build-mfem@v2.2
uses: mfem/github-actions/build-mfem@v2.0
with:
os: ${{ runner.os }}
target: opt
+18 -45
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -9,37 +9,25 @@
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
name: "Checks"
name: repo-check
permissions:
actions: write
on:
push:
pull_request:
workflow_dispatch:
# This workflow is run on pushes to any branch in the MFEM repo (with or without
# PRs), as well as on updates to PRs from forks. In particular, we do not
# duplicate work by running on both pushes and updates to local PRs. We do that
# by checking if the workflow trigger is 'push' ("github.event_name == 'push'")
# and if we are in a fork ("github.event.pull_request.head.repo.full_name !=
# github.repository").
jobs:
file-headers-check:
runs-on: ubuntu-latest
if: |
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
runs-on: ubuntu-18.04
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.11.0
uses: styfle/cancel-workflow-action@0.9.0
with:
access_token: ${{ github.token }}
- name: checkout mfem
uses: actions/checkout@v3
uses: actions/checkout@v2
- name: copyright check
id: copyright
@@ -61,10 +49,7 @@ jobs:
continue-on-error: true
- name: wrap-up
if: |
steps.copyright.outcome != 'success' ||
steps.license.outcome != 'success' ||
steps.release.outcome != 'success'
if: steps.copyright.outcome != 'success' || steps.license.outcome != 'success' || steps.release.outcome != 'success'
run: |
if [[ "${{ steps.copyright.outcome }}" != "success" ]]; then
echo "copyright check failed, unroll log for details"
@@ -78,55 +63,43 @@ jobs:
exit 1
code-style:
runs-on: ubuntu-latest
if: |
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
runs-on: ubuntu-18.04
steps:
- name: checkout mfem
uses: actions/checkout@v3
uses: actions/checkout@v2
- name: get astyle
run: |
sudo apt-get install astyle
sudo apt-get install astyle=3.1-1ubuntu2
- name: style check
run: |
./config/githooks/pre-push --style
documentation:
runs-on: ubuntu-latest
if: |
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
runs-on: ubuntu-18.04
steps:
- name: checkout mfem
uses: actions/checkout@v3
uses: actions/checkout@v2
- name: get doxygen and graphviz
run: |
sudo apt-get install doxygen graphviz
- name: update doxygen config file
run: |
cd doc
doxygen -u CodeDocumentation.conf.in
- name: build documentation
run: |
cd tests/scripts
./runtest documentation
branch-history:
if: |
github.ref != 'refs/heads/next' &&
github.ref != 'refs/heads/master' &&
(github.event_name == 'push' ||
github.event.pull_request.head.repo.full_name != github.repository)
runs-on: ubuntu-latest
if: github.ref != 'refs/heads/next' && github.ref != 'refs/heads/master'
runs-on: ubuntu-18.04
steps:
- name: checkout mfem
uses: actions/checkout@v3
uses: actions/checkout@v2
with:
fetch-depth: 0
+18 -23
View File
@@ -15,6 +15,19 @@
CMakeCache.txt
CMakeFiles/
# NSYS files
*.nsys-rep
# Benchmark files
*.tex
*.org
*.aux
*.log
*.gnuplot
*.table
*.pdf
*.png
# Backup files
*~
@@ -51,8 +64,8 @@ examples/ex1[04-9]
examples/ex1[0-9]p
examples/ex2[0-9]
examples/ex2[0-9]p
examples/ex3[0-9]
examples/ex3[0-9]p
examples/ex30
examples/ex30p
examples/refined.mesh
examples/displaced.mesh
@@ -78,7 +91,6 @@ examples/deformed.*
examples/velocity.*
examples/elastic_energy.*
examples/mode_*
examples/mode_deriv_*
examples/ex5-p-*.bp
examples/ex9-p-*.bp
examples/ex12-p-*.bp
@@ -131,12 +143,6 @@ examples/hiop/ex9-mesh.*
examples/hiop/ex9-init.*
examples/hiop/ex9-final.*
examples/ipopt/exContactBlockTL
examples/ipopt/exContactBlockTL.mesh
examples/ipopt/exContactBlockTL-mesh.*
examples/ipopt/exContactBlockTL-init.*
examples/ipopt/exContactBlockTL-final.*
examples/petsc/ex[1-69]p
examples/petsc/ex1[0-1]p
examples/petsc/mesh.*
@@ -209,7 +215,6 @@ miniapps/meshing/mesh-explorer
miniapps/meshing/shaper
miniapps/meshing/extruder
miniapps/meshing/trimmer
miniapps/meshing/reflector
miniapps/meshing/mesh-optimizer
miniapps/meshing/pmesh-optimizer
miniapps/meshing/minimal-surface
@@ -221,12 +226,9 @@ miniapps/meshing/toroid-*.mesh
miniapps/meshing/twist-*.mesh
miniapps/meshing/mesh-explorer.mesh
miniapps/meshing/partitioning.txt
miniapps/meshing/mesh-explorer-visit*
miniapps/meshing/mesh-explorer-paraview/
miniapps/meshing/shaper.mesh
miniapps/meshing/extruder.mesh
miniapps/meshing/trimmer.mesh
miniapps/meshing/reflected.mesh
miniapps/meshing/optimized*
miniapps/meshing/perturbed*
miniapps/meshing/polar-nc.mesh
@@ -250,7 +252,6 @@ miniapps/navier/navier_kovasznay_vs
miniapps/navier/navier_tgv
miniapps/navier/navier_shear
miniapps/navier/navier_3dfoc
miniapps/navier/navier_turbchan
miniapps/navier/tgv_out*.txt
miniapps/navier/*_output
@@ -271,22 +272,16 @@ miniapps/performance/sol.*
miniapps/shifted/distance
miniapps/shifted/ParaViewDistance
miniapps/shifted/ParaViewLSF
miniapps/shifted/extrapolate
miniapps/shifted/ParaViewExtrapolate
miniapps/shifted/diffusion
miniapps/shifted/diffusion.mesh
miniapps/shifted/diffusion.gf
miniapps/shifted/ParaViewDiffusion
miniapps/shifted/lsf_integral
miniapps/tools/display-basis
miniapps/tools/load-dc
miniapps/tools/convert-dc
miniapps/tools/lor-transfer
miniapps/tools/get-values
miniapps/tools/check-tmop-metric
miniapps/tools/tmop-metric-magnitude
miniapps/toys/automata
miniapps/toys/life
@@ -319,9 +314,6 @@ miniapps/solvers/sol.*
miniapps/parelag/MultilevelHcurlHdivSolver
miniapps/parelag/*.mesh
miniapps/multidomain/multidomain
miniapps/hooke/hooke
# Unit test binary and outputs
tests/unit/output_meshes
tests/unit/unit_tests
@@ -337,6 +329,9 @@ tests/unit/debug_device_tests
# Benchmark binaries
tests/benchmarks/bench_ceed
tests/benchmarks/bench_solvers
tests/benchmarks/bench_linext
tests/benchmarks/bench_lor_assembly
tests/benchmarks/bench_tmop
tests/benchmarks/bench_vector
tests/benchmarks/bench_virtuals
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+3 -3
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -18,14 +18,14 @@ variables:
- shell
- corona
rules:
# Don't run corona jobs if...
# Dont run corona jobs if...
# Note: This makes corona an "opt-in" machine. To activate builds on corona
# for a given GitLab clone of MFEM, go to Setting/CI-CD/variables, and set
# "ON_CORONA" to "ON". An LC account on for corona is required to trigger a
# pipeline there.
- if: '$CI_COMMIT_BRANCH =~ /_cnone/ || $ON_CORONA != "ON"'
when: never
# Don't run autotest update if...
# Dont run autotest update if...
- if: '$CI_JOB_NAME =~ /report/ && $AUTOTEST != "YES"'
when: never
# Report success on success status
+2 -2
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -45,5 +45,5 @@ variables:
- echo ${MFEM_DATA_DIR}
- echo ${SPEC}
# Next script uses 'THREADS': leaving it empty --> it uses 'make all -j'
- lalloc 1 -W 45 -q pdebug --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
- lalloc 1 -W 30 -q pdebug --atsdisable tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
needs: [setup]
+2 -2
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -52,4 +52,4 @@ variables:
- echo ${JOBID}
- echo ${MFEM_DATA_DIR}
- echo ${SPEC}
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 45 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
- srun $( [[ -n "${JOBID}" ]] && echo "--jobid=${JOBID}" ) -t 30 -N 1 tests/gitlab/build_and_test --spec "${SPEC}" --data-dir "${MFEM_DATA_DIR}" --data
+7 -7
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -20,8 +20,8 @@
- |
(
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
@@ -29,7 +29,7 @@
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
echo "Aquired lock on '$PWD/autotest.lock'"
date
# Report SUCCESS while holding the file lock on 'autotest.lock'.
# The next script uses the following environment variables:
@@ -55,8 +55,8 @@
- |
(
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
@@ -64,7 +64,7 @@
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
echo "Aquired lock on '$PWD/autotest.lock'"
date
# Report FAILURE while holding the file lock on 'autotest.lock'.
# The next script uses the following environment variables:
+4 -4
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -45,8 +45,8 @@ setup_baseline:
- |
(
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
@@ -54,7 +54,7 @@ setup_baseline:
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
echo "Aquired lock on '$PWD/autotest.lock'"
date
# clone/update the autotest repo while holding the file lock on
# 'autotest.lock'
+7 -7
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -34,8 +34,8 @@ setup:
- |
(
date
echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the try
echo "Waiting to aquire lock on '$PWD/mfem-data.lock' ..."
# try to get an excusive lock on fd 9 (mfem-data.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
@@ -43,7 +43,7 @@ setup:
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/mfem-data.lock'"
echo "Aquired lock on '$PWD/mfem-data.lock'"
date
# clone/update the mfem/data repo while holding the file lock on
# 'mfem-data.lock'
@@ -67,8 +67,8 @@ setup:
- |
(
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
@@ -76,7 +76,7 @@ setup:
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
echo "Aquired lock on '$PWD/autotest.lock'"
date
# clone/update the autotest repo while holding the file lock on
# 'autotest.lock'
+2 -2
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -23,7 +23,7 @@ allocate_resource:
stage: allocate_resource
script:
- echo ${ALLOC_NAME}
- salloc --exclusive --nodes=1 --partition=mi60 --time=45 --no-shell --job-name=${ALLOC_NAME}
- salloc --exclusive --nodes=1 --partition=mi60 --time=30 --no-shell --job-name=${ALLOC_NAME}
timeout: 6h
needs: [setup]
+1 -6
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -19,11 +19,6 @@ opt_mpi_cuda_xl_16_1_1_8:
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70"
extends: .build_and_test_on_lassen
opt_mpi_cuda_hypre_cuda_xl:
variables:
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
extends: .build_and_test_on_lassen
# Jobs report
report_job_success:
stage: report
+5 -5
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -64,8 +64,8 @@ report_baseline:
- |
(
date
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
echo "Waiting to aquire lock on '$PWD/autotest.lock' ..."
# try to get an excusive lock on fd 9 (autotest.lock) repeating the try
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
# command to hang indefinitely sometimes, so we use the timeout & retry
# as a workaround; we may want to add a counter for the number of
@@ -73,7 +73,7 @@ report_baseline:
while ! flock -w 5 9; do
true
done
echo "Acquired lock on '$PWD/autotest.lock'"
echo "Aquired lock on '$PWD/autotest.lock'"
date
# ----------------------
cd ${AUTOTEST_ROOT}/autotest || \
@@ -93,7 +93,7 @@ report_baseline:
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
git push origin master
else
for file in ${rundir}/*; do
echo "------------------------------"
+3 -3
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -23,7 +23,7 @@ allocate_resource:
stage: allocate_resource
script:
- echo ${ALLOC_NAME}
- salloc --exclusive --nodes=1 --partition=pdebug --time=45 --no-shell --job-name=${ALLOC_NAME}
- salloc --exclusive --nodes=1 --partition=pdebug --time=30 --no-shell --job-name=${ALLOC_NAME}
timeout: 6h
# GitLab jobs for the Quartz machine at LLNL
@@ -59,7 +59,7 @@ opt_par_gcc_6_1_0_sundials:
opt_par_gcc_6_1_0_petsc:
variables:
SPEC: "%gcc@6.1.0 +petsc ^petsc+mumps~superlu-dist"
SPEC: "%gcc@6.1.0 +petsc ^petsc+mumps"
extends: .build_and_test_on_quartz
opt_par_gcc_6_1_0_pumi:
+3 -3
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -29,9 +29,9 @@ mkdir _${BASELINE_TEST} && cd _${BASELINE_TEST}
# run
if [[ "${MACHINE_NAME}" == "quartz" || "${MACHINE_NAME}" == "ruby" ]]; then
salloc --nodes=1 -p pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
srun --nodes=1 -p pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
elif [[ ${MACHINE_NAME} == "corona" ]]; then
salloc --nodes=1 -t 60 -p pbatch ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
srun --nodes=1 -t 60 -p mi60 ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
elif [[ ${MACHINE_NAME} == "lassen" ]]; then
lalloc 1 -q pdebug ../runtest ../../mfem "${BASELINE_TEST} ${TPLS_DIR}"
else
-41
View File
@@ -1,41 +0,0 @@
#!/bin/bash
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Try to push to the remote 5 times. If the push fails, and the local and remote
# have diverged, then pull from the remote to merge changes, and try pushing
# again. If some other failure happens
for i in {1..5}; do
git push origin master && exit 0
# Wait for 20 seconds in case someone else is pushing to the remote
# concurrently
sleep 20
# Fetch any updates from the remote
git remote update
# Get the latest commit on the local branch
LOCAL=$(git rev-parse @)
# Get the latest commit on the remote
REMOTE=$(git rev-parse @{u})
# Get the common ancestor
BASE=$(git merge-base @ @{u})
# Have the local and remote diverged?
if [[ $LOCAL != $REMOTE && $LOCAL != $BASE && $REMOTE != $BASE ]]; then
git pull
if [[ $? == 0 ]]; then
continue
else
exit 1 # Something else went wrong trying to pull
fi
fi
done
exit 1 # Did not succeed in 5 attempts
+1 -1
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -32,7 +32,7 @@ if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
git push origin master
else
for file in ${rundir}/*; do
echo "------------------------------"
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -29,7 +29,7 @@ if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
git pull && \
git add ${rundir} && \
git commit -m "${msg}" && \
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
git push origin master
else
for file in ${rundir}/*; do
echo "------------------------------"
+1 -1
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+66 -329
View File
@@ -8,355 +8,92 @@
https://mfem.org
Version 4.5.1 (development)
Version 4.3.1 (development)
===========================
- When using discontinuous (L2) spaces, use local (element-wise) L2 projection
as the coarsening operator for non-conforming AMR meshes.
Meshing improvements
--------------------
- Added support for pyramids in non-conforming meshes. Currently only isotropic
refinement is supported in this case.
- Updated logic in FindPointsGSLIB to ignore points found near (but outside) the
domain boundary.
- Added support for pyramids in Gmsh meshes.
- Fixed a bug in TMOP metric 301.
- Added an option to auto-balance compound TMOP metrics.
Discretization improvements
---------------------------
- TBD
Linear and nonlinear solvers
----------------------------
- Added a fast normalization-based distance solver, see the Distance miniapp
in the miniapps/shifted/ directory.
New and updated examples and miniapps
-------------------------------------
- Added a new meshing miniapp, reflector, which reflects a high-order or NURBS
hexahedral mesh about a plane.
- The mesh-explorer miniapp can now save mesh files in the VisIt or ParaView
formats using the corresponding DataCollection objects. See option 'D' in the
main menu.
Integrations, testing and documentation
---------------------------------------
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
- The following integrations have updated minimum version requirements:
* RAJA >= 2022.10.3
Miscellaneous
-------------
- VisItDataCollection now correctly handles collection names containing
underscores.
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
used to represent the MPI rank because VisIt seems to require 6 digits.
This parameter can still be explicitly overridden with
VisItDataCollection::SetPadDigitsRank().
API changes
-----------
- The implicit cast methods of class Vector to 'double *' and 'const double *'
have been deprecated and generate deprecation warnings if used. They will be
removed in a future release.
- The methods Mesh::GetFaceBaseGeometry and Mesh::GetFaceGeometryType have been
deprecated, and Mesh::GetFaceGeometry (which provides identical functionality)
should be used instead.
Version 4.5, released on October 22, 2022
=========================================
Meshing improvements
--------------------
- Added new SubMesh and ParSubMesh classes that can be used to extract a subset
of a given Mesh. These classes have the same functionality as Mesh and ParMesh
and work with all existing MFEM interfaces like finite element spaces etc.
- Added a method, ParMesh::GetSerialMesh(), that reconstructs a partitioned
parallel mesh on a given single rank. Also, added ParMesh::PrintAsSerial(),
which saves the reconstructed serial mesh to a C++ stream on rank 0.
- Added more 3D TMOP metrics, as well as specialized metrics for mesh
untangling and worst-case quality improvement.
- Added a new method, Mesh::NodesUpdated, which should be called after the mesh
node coordinates have changed, e.g. after the mesh has moved. This is
necessary, for example, with device assembly of linear and bilinear forms.
- Added support for mixed meshes and pyramids in GSLIB-FindPoints.
Discretization improvements
---------------------------
- Added full assembly and device support for several LinearForm integrators:
* DomainLF: (f, v)
* VectorDomainLF: ((f1,...,fn), (v1,...,vn))
* DomainLFGrad: (f, grad(v))
* VectorDomainLFGrad: ((f1x,f1y,f1z,...,fnx,fny,fnz), grad(v1,...,vn))
The device assembly of linear forms has to be explicitly enabled by calling
LinearForm::UseFastAssembly(true), otherwise the legacy linear form assembly
is used by default.
- Added support for assembling low-order-refined matrices using a GPU-enabled
"batched" algorithm. The lor_solvers and plor_solvers now fully support GPU
acceleration with arbitrary user-supplied coefficients.
- Added a new class FaceQuadratureSpace that allows for the construction of
QuadratureFunctions on the interior or boundary faces of a mesh.
- Added a class CoefficientVector for efficient access of variable coefficient
values at quadrature points (in particular for GPU/device kernels).
- Added support for GridFunction::GetGradients() and
GriFunction::GetVectorGradient() on face-neighbor elements.
- Added WhiteGaussianNoiseDomainLFIntegrator: a LinearFormIntegrator class for
spatial Gaussian white noise.
- Added a new Zienkiewicz-Zhu patch recovery-based a posteriori error estimator.
See fem/estimators.hpp.
- Various fixes and improvements in LinearFormExtension.
Linear and nonlinear solvers
----------------------------
- Added a new class DGMassInverse that performs a local element-wise CG
iteration to solve systems involving the discontinuous Galerkin mass matrix,
including support for device/GPU acceleration.
- Added more flexibility to the constrained solver classes:
* PenaltyConstrainedSolver now allows for a vector of penalty parameters
(necessary for penalty contact)
* PenaltyConstrainedSolver and EliminationSolver can use GMRES or PCG
* All constraint solver classes can take a user-defined preconditioner
- Added functions to toggle additional options for the SuperLU_Dist and Hypre
preconditioners (ParaSails, Euclid, ILU).
- Added boundary elimination with device support for `SparseMatrix` and
`HypreParMatrix`.
New and updated examples and miniapps
-------------------------------------
- Added a new elasticity miniapp, Hooke, that showcases a low-level approach of
using MFEM to solve a nonlinear elasticity problem based on the fundamental
finite element operator decomposition. The miniapp also integrates with
automatic differentiation tools like a native dual number implementation or a
third party library such as Enzyme. See miniapps/elasticity for more details.
- Added example for body-fitted volumetric and shape integration using the
Algoim library in miniapps/shifted.
- Add a new example code, Example 33/33p, to demonstrate the solution of
spectral fractional PDEs with MFEM.
Integrations, testing and documentation
---------------------------------------
- Added a Dockerfile for a simple MFEM container, see config/docker/README.md.
More sophisticated developer containers are available in the new repo
https://github.com/mfem/containers.
- Added support for the LLVM-based automatic differentiation tool Enzyme, see
https://github.com/EnzymeAD/Enzyme. Build system flags and a convenience
header are provided. The functionality and interaction are demonstrated in a
new miniapp in miniapps/elasticity.
- Added support for partial assembly and fully matrix-free operators on mixed
meshes (different element types and p-adaptivity) through libCEED, including
device acceleration, e.g. with NVIDIA and AMD GPUs. The p-adaptivity is
currently limited to 2D serial meshes. All mixed element topologies are
supported in both serial and parallel.
- Added support for ParMoonolith, https://bitbucket.org/zulianp/par_moonolith,
which provides parallel non-conforming, non-matching, variational, volumetric
mesh information transfer. With ParMortarAssember, fields can be exchanged
between arbitrarily distributed and unrelated finite element meshes in a
variationally consistent way.
- Fully encapsulated SUNDIALS `N_Vector` object within the `SundialsNVector`
class by removing deprecated (e.g. `HypreParVector::ToNVector`) and
non-deprecated (e.g. `Vector::ToNVector`) functions in other classes.
- New benchmark for the different assembly levels inspired by the CEED
Bake-Off Problems, see tests/benchmarks/bench_assembly_levels.cpp.
- Added Windows 2022 CI testing with GitHub actions.
Miscellaneous
-------------
- The method SparseMatrix::EnsureMultTranspose() is now automatically called
by the methods AddMultTranspose(), MultTranspose(), and AbsMultTranspose().
Added a method with the same name to class HypreParMatrix which is also called
automatically by the HypreParMatrix::MultTranspose() methods.
- Updated various MemoryUsage methods to return 'std::size_t' instead of 'long'
since the latter is 32-bit in Win64 builds.
- When using `AssemblyLevel::FULL`, `FABilinearFormExtension::FormSystemMatrix`
outputs an `OperatorHandle` containing a `SparseMatrix` in serial, and an
`HypreParMatrix` in parallel (instead of a `ConstrainedOperator`).
- In various places in the library, replace the use of 'long' with 'long long'
to better support Win64 builds where 'long' is 32-bit and 'long long' is
64-bit. On Linux and MacOS, both types are typically 64-bit.
- The behavior of GridFunction::GetTrueVector() has been changed to not return
an empty true vector.
- Added support for ordering search points byVDIM in FindPointsGSLIB.
- Various other simplifications, extensions, and bugfixes in the code.
Version 4.4, released on March 21, 2022
=======================================
Linear and nonlinear solvers
----------------------------
- Added support for using the hypre library built with HIP support. Similar to
the existing hypre + CUDA support, most of the MFEM examples and miniapps work
transparently with hypre + HIP builds. This includes the BoomerAMG, AMS, and
ADS solvers.
- Added a simple singleton class, Hypre, to automatically set hypre's global
parameters, particularly GPU-relevant options. Updated parallel example codes
and miniapps to call Hypre::Init() where appropriate.
- Added hipSPARSE support for sparse matrix-vector multiplications.
- More explicit and consistent formatting of the output of iterative solvers
- More explicit and consistent formating of the output of iterative solvers
with the new IterativeSolver::PrintLevel options. See linalg/solvers.hpp.
Meshing improvements
--------------------
- New TMOP-based methods for hr-adaptivity, interface fitting, and tangential
relaxation of high-order meshes.
- Added support for automatic differentiation. Users can select between native
implementation and external library implementation during configuration. One
parallel and two serial examples are implemented in the miniapps/autodiff/
directory.
- GridFunctionCoefficient (and the related vector, gradient, divergence, and
curl classes) now work properly with LORDiscretization and LORSolver.
- Added support for mesh preprocessing to resolve fine scale problem data
before simulation. This feature uses adaptive mesh refinement to control the
associated data oscillation error. See the new Example 30/30p.
- Switched from Artistic Style (astyle) version 2.05.1 to version 3.1 for code
formatting. See the "make style" target.
- Split the fem/fe.?pp files into separate files in the new fem/fe/ directory
to simplify and clarify the organization of FiniteElement classes.
- Added support for hr-adaptivity using TMOP-based error estimator.
- Coefficient::SetTime now propagates the new time into internally stored
Coefficient objects.
- Added initial support for google-benchmarks in the tests/benchmarks directory.
It can be enabled with MFEM_USE_BENCHMARK=YES.
- Added Binder (mybinder.org) configuration files for C++ MFEM Jupyter Notebooks
with inline GLVis visualization as well as a new examples/jupyter/ directory
with a sample notebook based on Example 1. Implementation based on xeus-cling,
github.com/jupyter-xeus/xeus-cling + xeus-glvis, github.com/GLVis/xeus-glvis.
- Added 'double' atomicAdd implementation for previous versions of CUDA.
- Adding lowest order Nedelec and Raviart-Thomas basis functions on wedge
shaped elements.
- Added initial support for meshes with pyramidal elements, including several
pyramidal meshes in the data/ directory and support for the lowest order H1,
Nedelec, Raviart-Thomas, and L2 basis functions on pyramids.
- Added a simpler interface to access mesh face information, see FaceInformation
and GetFaceInformation in the Mesh class.
- Updated the hypre interface according to changes in hypre-2.22.1. The ADS
solver is now fully working on GPUs.
- Gmsh meshes where all elements have zero physical tag (the default Gmsh output
format if no physical groups are defined) are now successfully loaded, and
elements are reassigned attribute number 1.
- Tetrahedral meshes no longer need to be reordered to support high order
Nedelec basis functions. This will allow future support for Nedelec basis
functions on wedges and pyramids which are not amenable to reordering. The
ReorientTetMesh method of the Mesh and ParMesh classes has been deprecated.
- Added ParMesh adjacency set (adjset) creation support to the Conduit Mesh
Blueprint MFEM wrapper functions in ConduitDataCollection.
- Gmsh meshes where all elements have zero physical tag (the default Gmsh
output format if no physical groups are defined) are now successfully loaded,
and elements are reassigned attribute number 1.
Discretization improvements
---------------------------
- Added general dof transformation to support high order Nedelec basis functions
on tetrahedral meshes without reordering. The ReorientTetMesh method of the
Mesh and ParMesh classes has been deprecated. See the new DofTransformation
class in fem/doftrans.hpp.
- GPU-enabled partial (PA) and element (EA) assembly for discontinuous Galerkin
methods on nonconforming AMR meshes.
- Support for arbitrary order Nedelec and Raviart-Thomas elements on wedges.
- Added special Nedelec and Raviart-Thomas basis functions for modeling three
dimensional vector fields in 1D and 2D domains, see the new Example 31/31p.
- GridFunctionCoefficient (and the related vector, gradient, divergence, and
curl classes) now work properly with LORDiscretization and LORSolver.
- Added PA support for the action of MixedScalarCurlIntegrator in 2D and
MixedVectorGradientIntegrator in 2D and 3D, as well as their transposes.
- Coefficient::SetTime now propagates the new time into internally stored
Coefficient objects.
- Split the fem/fe.?pp files into separate files in the new fem/fe/ directory to
simplify and clarify the organization of FiniteElement classes.
New and updated examples and miniapps
-------------------------------------
- Added two new miniapps with initial support for automatic differentiation (AD)
in the miniapps/autodiff/ directory. Users can select between external library
and native implementation during configuration. The support for AD will be
extended in future releases of MFEM.
- Added Binder (mybinder.org) configuration files for C++ MFEM Jupyter Notebooks
with inline GLVis visualization in the new examples/jupyter/ directory with a
sample notebook based on Example 1. The implementation is based on xeus-cling,
see github.com/jupyter-xeus/xeus-cling and github.com/GLVis/xeus-glvis.
- Added a new miniapp (Extrapolation) for PDE-based extrapolation of finite
element functions from known values in a set of elements to the rest of the
computational domain. See miniapps/shifted/extrapolate.cpp.
- Added new miniapp that uses the ParELAG library, its hybrid smoothers, and the
- Added new miniapps that use the ParELAG library, its hybrid smoothers, and the
hierarchy of spaces created by the element-based AMG (AMGe) methodology in
ParELAG to build multigrid solvers for H(curl) and H(div) forms. See the
miniapps/parelag directory for more details.
- Added a new Example 30/30p demonstrating support for mesh preprocessing to
resolve fine scale problem data before simulation. This feature uses adaptive
mesh refinement to control the associated data oscillation error.
- Added new Examples 31, 31p and 32p showing anisotropic definite Maxwell
serial/parallel solver and parallel eigensolver 1D, 2D, or 3D.
- Updated the mesh-optimizer and pmesh-optimizer miniapps to demonstrate the
hr-adaptivity and interface fitting capability.
- The HPC versions of ex1 and ex1p (in miniapps/performance) now support runtime
selection of either 2D or 3D meshes.
Integrations, testing and documentation
---------------------------------------
- Doxygen documentation for all releases is now available at docs.mfem.org.
- The following integrations have updated minimum version requirements:
* HIOP >= 0.4.6
* HYPRE >= 2.23.0 for HIP support
* libCEED >= 0.10
* PUMI >= 2.2.6
* RAJA >= 0.14.0
* Umpire >= 3.0.0
see INSTALL for more details.
- Added new optional integrations with ParELAG and CoDiPack (version >= 1.9.3+).
- Added initial support for Google Benchmark (version >= 1.5.6) in the
tests/benchmarks directory. It can be enabled with MFEM_USE_BENCHMARK=YES.
- Switched from Artistic Style (astyle) version 2.05.1 to version 3.1 for code
formatting. See the "make style" target.
Miscellaneous
-------------
- Added a simple singleton class, Mpi, as a replacement for MPI_Session. New
code should use Mpi::Init() and other Mpi methods instead of MPI_Session.
- Added ParaView visualization of QuadratureFunction fields, through both
QuadratureFunction::SaveVTU and ParaViewDataCollection::RegisterQField.
- Fixed several MinGW build issues on Windows.
- Added 'double' atomicAdd implementation for previous versions of CUDA.
- HypreParVector and Vector now support C++ move semantics, and the copy
constructor for HypreParVector now copies the local vector data.
- Removed the 'u' flag in the ar command, to update all files in the archive,
- Remove the 'u' flag in the ar command, to update all files in the archive,
avoiding file name collisions from different subdirectories.
- Various other simplifications, extensions, and bugfixes in the code.
- Added initial TMOP-based capabilities for surface fitting and tangential
relaxation in the mesh-optimizer and pmesh-optimizer miniapps.
- Added ParMesh Adjaceny Set (adjset) creation support to the Conduit Mesh
Blueprint MFEM wrapper functions in ConduitDataCollection.
- Added full assembly / device support for the LinearForm integrators:
* DomainLF: L(v) := (f, v)
* VectorDomainLF: L(v) := ((f1,...,fn), (v1,...,vn))
* DomainLFGrad: L(v) := (f,grad v)
* VectorDomainLFGrad: L(v) := ((f1x,f1y,f1z,...,fnx,fny,fnz),grad(v1,...,vn))
It can be enabled by setting the linear assembly level to
'LinearAssemblyLevel::FULL' with the 'LinearForm::SetAssemblyLevel' method.
- `HypreParVector` and `Vector` now support move semantics, and the copy
constructor for `HypreParVector` now copies the local vector data.
- The HPC versions of ex1 and ex1p (in miniapps/performance) now support
runtime selection of either 2D or 3D meshes.
Version 4.3, released on July 29, 2021
======================================
+73 -133
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -10,14 +10,15 @@
# CONTRIBUTING.md for details.
# The variable CMAKE_CXX_STANDARD and related were introduced in CMake v3.1
# Version 3.8 fixes the handling of CMAKE_CXX_STANDARD for try_compile.
# Version 3.8 or newer is required for direct CUDA support.
cmake_minimum_required(VERSION 3.8)
cmake_minimum_required(VERSION 3.1)
set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
"Path to optional user configuration file.")
# Require C++11 and disable compiler-specific extensions
set(CMAKE_CXX_STANDARD 11)
if (MFEM_USE_GINKGO)
set(CMAKE_CXX_STANDARD 14)
endif()
set(CMAKE_CXX_STANDARD_REQUIRED ON)
set(CMAKE_CXX_EXTENSIONS OFF)
@@ -53,7 +54,7 @@ project(mfem NONE)
# Current version of MFEM, see also `makefile`.
# mfem_VERSION = (string)
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
set(${PROJECT_NAME}_VERSION 4.5.1)
set(${PROJECT_NAME}_VERSION 4.3.1)
# Prohibit in-source build
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
@@ -68,7 +69,8 @@ set(XSDK_ENABLE_C OFF)
set(XSDK_ENABLE_Fortran OFF)
# Check if we need to enable C or Fortran.
if (MFEM_USE_CONDUIT OR
if (CMAKE_VERSION VERSION_LESS 3.2 OR
MFEM_USE_CONDUIT OR
MFEM_USE_SIDRE OR
MFEM_USE_PETSC)
# This seems to be needed by:
@@ -82,15 +84,6 @@ if (MFEM_USE_STRUMPACK)
# Just needed to find the MPI_Fortran libraries to link with
set(XSDK_ENABLE_Fortran ON)
endif()
# SUNDIALS, STRUMPACK, Ginkgo, RAJA and Umpire require C++14:
if ((MFEM_USE_SUNDIALS OR
MFEM_USE_STRUMPACK OR
MFEM_USE_GINKGO OR
MFEM_USE_RAJA OR
MFEM_USE_UMPIRE) AND
("${CMAKE_CXX_STANDARD}" LESS "14"))
set(CMAKE_CXX_STANDARD 14)
endif()
# Include xSDK default CMake file.
include("${CMAKE_CURRENT_SOURCE_DIR}/config/XSDKDefaults.cmake")
@@ -106,12 +99,17 @@ if (MFEM_USE_CUDA)
if (MFEM_USE_HIP)
message(FATAL_ERROR " *** MFEM_USE_HIP cannot be combined with MFEM_USE_CUDA.")
endif()
# MFEM_USE_CUDA requires CMake 3.8 or newer (for direct CUDA support)
cmake_minimum_required(VERSION 3.8 FATAL_ERROR)
# Use ${CMAKE_CXX_COMPILER} as the cuda host compiler.
if (NOT CMAKE_CUDA_HOST_COMPILER)
set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
endif()
enable_language(CUDA)
set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD})
set(CMAKE_CUDA_STANDARD 11)
if (MFEM_USE_GINKGO)
set(CMAKE_CUDA_STANDARD 14)
endif()
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
set(CMAKE_CUDA_EXTENSIONS OFF)
set(CUDA_FLAGS "--expt-extended-lambda")
@@ -134,11 +132,10 @@ if (MFEM_USE_CUDA)
set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
endif()
set(CMAKE_CUDA_FLAGS ${CMAKE_CUDA_FLAGS} ${CUDA_FLAGS})
set(CMAKE_CUDA_FLAGS "${CUDA_FLAGS}" CACHE STRING
"CUDA flags set for MFEM" FORCE)
set(CUSPARSE_FOUND TRUE)
set(CUSPARSE_LIBRARIES "cusparse")
set(CUBLAS_FOUND TRUE)
set(CUBLAS_LIBRARIES "cublas")
endif()
if (XSDK_ENABLE_C)
@@ -183,48 +180,15 @@ else()
set(MFEM_DEBUG OFF)
endif()
# AMD HIP
if (MFEM_USE_HIP)
if (HIP_ARCH)
message(STATUS "Using HIP architecture: ${HIP_ARCH}")
set(GPU_TARGETS "${HIP_ARCH}" CACHE STRING "HIP targets to compile for")
endif()
if (ROCM_PATH)
list(INSERT CMAKE_PREFIX_PATH 0 ${ROCM_PATH})
endif()
find_package(HIP REQUIRED)
find_package(HIPSPARSE REQUIRED)
endif()
# OpenMP
if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
if (NOT MFEM_THREAD_SAFE AND MFEM_USE_LEGACY_OPENMP)
message(FATAL_ERROR " *** MFEM_USE_LEGACY_OPENMP requires MFEM_THREAD_SAFE=ON.")
endif()
find_package(OpenMP REQUIRED)
set(OPENMP_LIBRARIES ${OpenMP_CXX_LIBRARIES})
if(APPLE)
# On macOS, the compiler needs additional help to find the <omp.h> header.
# See issue #2642 for more information.
set(OPENMP_INCLUDE_DIRS ${OpenMP_CXX_INCLUDE_DIRS})
endif(APPLE)
if (OPENMP_FOUND)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
if (MFEM_USE_CUDA)
set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcompiler=${OpenMP_CXX_FLAGS}")
endif()
endif()
endif()
# MPI -> hypre; PETSc (optional)
if (MFEM_USE_MPI)
find_package(MPI REQUIRED)
set(MPI_CXX_INCLUDE_DIRS ${MPI_CXX_INCLUDE_PATH})
if (MFEM_MPIEXEC)
string(REPLACE " " ";" MPIEXEC ${MFEM_MPIEXEC})
set(MPIEXEC ${MFEM_MPIEXEC})
endif()
if (MFEM_MPIEXEC_NP)
string(REPLACE " " ";" MPIEXEC_NUMPROC_FLAG ${MFEM_MPIEXEC_NP})
set(MPIEXEC_NUMPROC_FLAG ${MFEM_MPIEXEC_NP})
endif()
# Parallel MFEM depends on hypre
find_package(HYPRE REQUIRED)
@@ -281,6 +245,20 @@ if (MFEM_USE_LAPACK)
find_package(LAPACK REQUIRED)
endif()
# OpenMP
if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
if (NOT MFEM_THREAD_SAFE AND MFEM_USE_LEGACY_OPENMP)
message(FATAL_ERROR " *** MFEM_USE_LEGACY_OPENMP requires MFEM_THREAD_SAFE=ON.")
endif()
find_package(OpenMP REQUIRED)
set(OPENMP_LIBRARIES ${OpenMP_CXX_LIBRARIES})
if(APPLE)
# On macOS, the compiler needs additional help to find the <omp.h> header.
# See issue #2642 for more information.
include_directories(${OpenMP_CXX_INCLUDE_DIRS})
endif(APPLE)
endif()
# SuiteSparse (before SUNDIALS which may depend on KLU)
if (MFEM_USE_SUITESPARSE)
find_package(SuiteSparse REQUIRED
@@ -299,6 +277,11 @@ if (MFEM_USE_SUNDIALS)
find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
endif()
# Mesquite
if (MFEM_USE_MESQUITE)
find_package(Mesquite REQUIRED)
endif()
# SuperLU_DIST can only be enabled in parallel
if (MFEM_USE_SUPERLU)
if (MFEM_USE_MPI)
@@ -371,7 +354,7 @@ endif()
if (MFEM_USE_PUMI)
# If PUMI_DIR was specified, only link to that directory,
# i.e. don't link to another installation in /usr/lib by mistake
find_package(SCOREC 2.2.6 REQUIRED OPTIONAL_COMPONENTS gmi_sim
find_package(SCOREC 2.1.0 REQUIRED OPTIONAL_COMPONENTS gmi_sim
CONFIG PATHS ${PUMI_DIR} NO_DEFAULT_PATH)
if (SCOREC_FOUND)
# Define a header file with the MFEM_USE_SIMMETRIX preprocessor variable
@@ -383,36 +366,12 @@ if (MFEM_USE_PUMI)
endif()
endif()
# Moonolith
if(MFEM_USE_MOONOLITH)
find_package(ParMoonolith REQUIRED)
if(ParMoonolith_FOUND)
get_target_property(
MOONOLITH_INCLUDE_DIRS ParMoonolith::par_moonolith
INTERFACE_INCLUDE_DIRECTORIES)
set(MOONOLITH_FOUND TRUE)
set(MOONOLITH_LIBRARIES ParMoonolith::par_moonolith)
message(
STATUS
"MOONOLITH_LIBRARIES=${MOONOLITH_LIBRARIES}, MOONOLITH_INCLUDE_DIRS=${MOONOLITH_INCLUDE_DIRS}")
endif()
endif()
# HiOp optimizer
if (MFEM_USE_HIOP)
find_package(HIOP REQUIRED)
# find_package updates HIOP_FOUND, HIOP_INCLUDE_DIRS, HIOP_LIBRARIES
endif()
# IpOpt optimizer
if (MFEM_USE_IPOPT)
find_package(IPOPT REQUIRED)
message(
STATUS
"IPOPT_INCLUDE_DIRS=${IPOPT_INCLUDE_DIRS}, IPOPT_LIBRARIES=${IPOPT_LIBRARIES}, IPOPT_DIR=${IPOPT_DIR}")
# find_package updates IPOPT_FOUND, IPOPT_INCLUDE_DIRS, IPOPT_LIBRARIES
endif()
# CoDiPack package
if (MFEM_USE_CODIPACK)
find_package(CODIPACK REQUIRED)
@@ -444,9 +403,16 @@ if (MFEM_USE_CALIPER)
find_package(Caliper REQUIRED)
endif()
# Algoim
if (MFEM_USE_ALGOIM)
find_package(Algoim REQUIRED)
# AMD HIP
if (MFEM_USE_HIP)
find_package(HIP REQUIRED)
if (HIP_ARCH)
message(STATUS "Using HIP architecture: ${HIP_ARCH}")
list(APPEND HIP_HIPCC_FLAGS "--amdgpu-target=${HIP_ARCH}")
if (MFEM_USE_GINKGO)
list(APPEND HIP_HIPCC_FLAGS "-std=c++14")
endif()
endif()
endif()
# ADIOS2 for parallel I/O
@@ -465,11 +431,6 @@ if (MFEM_USE_PARELAG)
find_package(PARELAG REQUIRED)
endif()
# Enzyme
if (MFEM_USE_ENZYME)
find_package(ENZYME REQUIRED)
endif()
# MFEM_TIMER_TYPE
if (NOT DEFINED MFEM_TIMER_TYPE)
if (APPLE)
@@ -488,29 +449,15 @@ if (NOT DEFINED MFEM_TIMER_TYPE)
endif()
endif()
# Without this, CMake 3.21.1 (and 3.20.2) run into CMake Errors like the following:
# CMake Error at config/cmake/modules/MfemCmakeUtilities.cmake:60 (add_library):
# Target "mfem" links to target "Threads::Threads" but the target was not
# found. Perhaps a find_package() call is missing for an IMPORTED target, or
# an ALIAS target is missing?
# Call Stack (most recent call first):
# CMakeLists.txt:474 (mfem_add_library)
#
# NOTE: We need to figure out which TPL library adds the dependency on
# "Threads::Threads" and call the next line only when that TPL library is
# enabled. -V. Dobrev
find_package(Threads REQUIRED)
# List all possible libraries in order of dependencies.
# [METIS < SuiteSparse]:
# With newer versions of SuiteSparse which include METIS header using 64-bit
# integers, the METIS header (with 32-bit indices, as used by mfem) needs to
# be before SuiteSparse.
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
NETCDF MPFR PUMI HIOP IPOPT POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
set(MFEM_TPLS OPENMP HYPRE BLAS LAPACK SuperLUDist METIS SuiteSparse SUNDIALS PETSC
SLEPC MESQUITE MUMPS STRUMPACK AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB NETCDF
MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE ADIOS2
CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG MPI_CXX)
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
set(TPL_LIBRARIES "")
@@ -522,11 +469,18 @@ foreach(TPL IN LISTS MFEM_TPLS)
list(APPEND TPL_INCLUDE_DIRS ${${TPL}_INCLUDE_DIRS})
endif()
endforeach(TPL)
list(REVERSE TPL_LIBRARIES)
list(REMOVE_DUPLICATES TPL_LIBRARIES)
list(REVERSE TPL_LIBRARIES)
list(REMOVE_DUPLICATES TPL_INCLUDE_DIRS)
# message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
include_directories(${TPL_INCLUDE_DIRS})
if (OPENMP_FOUND)
message(STATUS "MFEM: using package OpenMP")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
if (MFEM_USE_CUDA)
set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcompiler=${OpenMP_CXX_FLAGS}")
endif()
endif()
message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
message(STATUS "MFEM version: v${MFEM_VERSION_STRING}")
@@ -540,17 +494,14 @@ message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
set(SOURCES "")
set(HEADERS "")
set(MFEM_SOURCE_DIRS general linalg mesh fem)
if(MFEM_USE_MOONOLITH)
set(MFEM_SOURCE_DIRS ${MFEM_SOURCE_DIRS} fem/moonolith)
endif()
foreach(DIR IN LISTS MFEM_SOURCE_DIRS)
add_subdirectory(${DIR})
endforeach()
if (MFEM_USE_CUDA)
set_source_files_properties(${SOURCES} PROPERTIES LANGUAGE CUDA)
elseif(MFEM_USE_HIP)
set_source_files_properties(${SOURCES} PROPERTIES HIP_SOURCE_PROPERTY_FORMAT TRUE)
endif()
add_subdirectory(config)
@@ -575,15 +526,6 @@ target_link_libraries(mfem PUBLIC ${TPL_LIBRARIES})
if (MINGW)
target_link_libraries(mfem PRIVATE ws2_32)
endif()
if (MSVC)
target_compile_options(mfem PUBLIC "/wd4819")
endif()
message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
target_include_directories(mfem
PUBLIC
$<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}>
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}>
${TPL_INCLUDE_DIRS})
set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
@@ -706,18 +648,12 @@ add_subdirectory(doc)
message(STATUS "CMAKE_INSTALL_PREFIX = ${CMAKE_INSTALL_PREFIX}")
set(INSTALL_INCLUDE_DIR include
CACHE PATH "Relative path for installing header files.")
set(INSTALL_BIN_DIR bin
CACHE PATH "Relative path for installing the binaries.")
set(INSTALL_LIB_DIR lib
CACHE PATH "Relative path for installing the library.")
# other options: "share/mfem/cmake", "lib/mfem/cmake"
set(INSTALL_CMAKE_DIR lib/cmake/mfem
CACHE PATH "Relative path for installing cmake config files.")
target_include_directories(mfem
PUBLIC
$<INSTALL_INTERFACE:${INSTALL_INCLUDE_DIR}>)
# The 'install' target will not depend on 'all'.
# set(CMAKE_SKIP_INSTALL_ALL_DEPENDENCY TRUE)
@@ -726,9 +662,7 @@ set(CMAKE_INSTALL_DEFAULT_COMPONENT_NAME Development)
# Install the library
install(TARGETS ${PROJECT_NAME}
EXPORT ${PROJECT_NAME_UC}Targets
RUNTIME DESTINATION ${INSTALL_BIN_DIR}
LIBRARY DESTINATION ${INSTALL_LIB_DIR}
ARCHIVE DESTINATION ${INSTALL_LIB_DIR})
DESTINATION ${INSTALL_LIB_DIR})
# Install the master headers
foreach(Header mfem.hpp mfem-performance.hpp)
@@ -753,7 +687,7 @@ endif()
if (MFEM_USE_CEED)
install(DIRECTORY ${MFEM_SOURCE_DIRS}
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem
FILES_MATCHING PATTERN "fem/ceed/integrators/*/*.h")
FILES_MATCHING PATTERN "fem/ceed/*.h")
endif()
# Install ${HEADERS}
@@ -784,8 +718,14 @@ export(TARGETS ${PROJECT_NAME}
# TODO: How do we register the install-tree? Replacing the build-tree?
export(PACKAGE ${PROJECT_NAME})
# Extract the include directories required to use MFEM
get_target_property(MFEM_TPL_INCLUDE_DIRS mfem INCLUDE_DIRECTORIES)
if (NOT MFEM_TPL_INCLUDE_DIRS)
set(MFEM_TPL_INCLUDE_DIRS "")
endif()
# This is the build-tree version
set(INCLUDE_INSTALL_DIRS ${PROJECT_BINARY_DIR} ${TPL_INCLUDE_DIRS})
set(INCLUDE_INSTALL_DIRS ${PROJECT_BINARY_DIR} ${MFEM_TPL_INCLUDE_DIRS})
set(LIB_INSTALL_DIR ${PROJECT_BINARY_DIR})
configure_package_config_file(config/cmake/MFEMConfig.cmake.in
${CMAKE_CURRENT_BINARY_DIR}/MFEMConfig.cmake
@@ -793,7 +733,7 @@ configure_package_config_file(config/cmake/MFEMConfig.cmake.in
PATH_VARS INCLUDE_INSTALL_DIRS LIB_INSTALL_DIR)
# This is the version that will be installed
set(INCLUDE_INSTALL_DIRS ${INSTALL_INCLUDE_DIR} ${TPL_INCLUDE_DIRS})
set(INCLUDE_INSTALL_DIRS ${INSTALL_INCLUDE_DIR} ${MFEM_TPL_INCLUDE_DIRS})
set(LIB_INSTALL_DIR ${INSTALL_LIB_DIR})
configure_package_config_file(config/cmake/MFEMConfig.cmake.in
${CMAKE_CURRENT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/MFEMConfig.cmake
+34 -42
View File
@@ -8,7 +8,7 @@
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuild-analysis+branch%3Amaster"><img alt="Build Analysis" src="https://github.com/mfem/mfem/actions/workflows/mfem-analysis.yml/badge.svg?branch=master"></a>
<a href="https://github.com/mfem/mfem/actions?query=workflow%3Abuilds-and-tests+branch%3Amaster"><img alt="Builds and Tests" src="https://github.com/mfem/mfem/actions/workflows/builds-and-tests.yml/badge.svg?branch=master"></a>
<a href="https://ci.appveyor.com/project/mfem/mfem"><img alt="Build Status" src="https://ci.appveyor.com/api/projects/status/19non9sqm6msi2wy?svg=true"></a>
<a href="https://docs.mfem.org/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
<a href="https://mfem.github.io/doxygen/html/index.html"><img alt="Doxygen" src="https://img.shields.io/badge/code-documented-brightgreen.svg"></a>
</p>
@@ -102,9 +102,7 @@ The MFEM source code has the following structure:
.
├── config
│ ├── cmake
── docker
│ ├── githooks
│ └── vcpkg
── githooks
├── data
├── doc
├── examples
@@ -112,9 +110,7 @@ The MFEM source code has the following structure:
│ ├── caliper
│ ├── ginkgo
│ ├── hiop
│ ├── ipopt
│ ├── jupyter
│ ├── moonolith
│ ├── petsc
│ ├── pumi
│ ├── sundials
@@ -122,25 +118,20 @@ The MFEM source code has the following structure:
├── fem
│ ├── ceed
│ ├── fe
│ ├── lor
│ ├── moonolith
│ ├── qinterp
│ └── tmop
├── general
├── linalg
│ └── simd
├── mesh
│ └── submesh
├── miniapps
│ ├── adjoint
│ ├── autodiff
│ ├── common
│ ├── electromagnetics
│ ├── gslib
│ ├── hooke
│ ├── meshing
│ ├── mtop
│ ├── multidomain
│ ├── navier
│ ├── nurbs
│ ├── parelag
@@ -166,24 +157,24 @@ classes implementing the finite element, mesh and linear algebra concepts
respectively.
- The main mesh classes are:
+ [`Mesh`](https://docs.mfem.org/html/classmfem_1_1Mesh.html)
+ [`NCMesh`](https://docs.mfem.org/html/classmfem_1_1NCMesh.html)
+ [`Element`](https://docs.mfem.org/html/classmfem_1_1Element.html)
+ [`ElementTransformation`](https://docs.mfem.org/html/classmfem_1_1ElementTransformation.html)
+ [`Mesh`](https://mfem.github.io/doxygen/html/classmfem_1_1Mesh.html)
+ [`NCMesh`](https://mfem.github.io/doxygen/html/classmfem_1_1NCMesh.html)
+ [`Element`](https://mfem.github.io/doxygen/html/classmfem_1_1Element.html)
+ [`ElementTransformation`](https://mfem.github.io/doxygen/html/classmfem_1_1ElementTransformation.html)
- The main finite element classes are:
+ [`FiniteElement`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
+ [`FiniteElementCollection`](https://docs.mfem.org/html/classmfem_1_1FiniteElement.html)
+ [`FiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1FiniteElementSpace.html)
+ [`GridFunction`](https://docs.mfem.org/html/classmfem_1_1GridFunction.html)
+ [`BilinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html)
+ [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://docs.mfem.org/html/classmfem_1_1MixedBilinearForm.html)
+ [`FiniteElement`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
+ [`FiniteElementCollection`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElement.html)
+ [`FiniteElementSpace`](https://mfem.github.io/doxygen/html/classmfem_1_1FiniteElementSpace.html)
+ [`GridFunction`](https://mfem.github.io/doxygen/html/classmfem_1_1GridFunction.html)
+ [`BilinearFormIntegrator`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearFormIntegrator.html) and [`LinearFormIntegrator`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html)
+ [`LinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearFormIntegrator.html), [`BilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`MixedBilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1MixedBilinearForm.html)
- The main linear algebra classes and sources are
+ [`Operator`](https://docs.mfem.org/html/classmfem_1_1Operator.html) and [`BilinearForm`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html)
+ [`Vector`](https://docs.mfem.org/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](https://docs.mfem.org/html/classmfem_1_1LinearForm.html)
+ [`DenseMatrix`](https://docs.mfem.org/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](https://docs.mfem.org/html/classmfem_1_1SparseMatrix.html)
+ Sparse [smoothers](https://docs.mfem.org/html/sparsesmoothers_8hpp.html) and linear [solvers](https://docs.mfem.org/html/solvers_8hpp.html)
+ [`Operator`](https://mfem.github.io/doxygen/html/classmfem_1_1Operator.html) and [`BilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html)
+ [`Vector`](https://mfem.github.io/doxygen/html/classmfem_1_1BilinearForm.html) and [`LinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1LinearForm.html)
+ [`DenseMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1DenseMatrix.html) and [`SparseMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1SparseMatrix.html)
+ Sparse [smoothers](https://mfem.github.io/doxygen/html/sparsesmoothers_8hpp.html) and linear [solvers](https://mfem.github.io/doxygen/html/solvers_8hpp.html)
#### Parallel implementation
@@ -193,13 +184,13 @@ shared geometric entities between different tasks. The parallel source files
have a `p` prefix, e.g. `pmesh.cpp` vs. the serial `mesh.cpp`.
- The main parallel classes are
+ [`ParMesh`](https://docs.mfem.org/html/solvers_8hpp.html)
+ [`ParNCMesh`](https://docs.mfem.org/html/classmfem_1_1ParMesh.html)
+ [`ParFiniteElementSpace`](https://docs.mfem.org/html/classmfem_1_1ParFiniteElementSpace.html)
+ [`ParGridFunction`](https://docs.mfem.org/html/classmfem_1_1ParGridFunction.html)
+ [`ParBilinearForm`](https://docs.mfem.org/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](https://docs.mfem.org/html/classmfem_1_1ParLinearForm.html)
+ [`HypreParMatrix`](https://docs.mfem.org/html/classmfem_1_1HypreParMatrix.html) and [`HypreParVector`](https://docs.mfem.org/html/classmfem_1_1HypreParVector.html)
+ [`HypreSolver`](https://docs.mfem.org/html/classmfem_1_1HypreSolver.html) and other [hypre classes](https://docs.mfem.org/html/hypre_8hpp.html)
+ [`ParMesh`](https://mfem.github.io/doxygen/html/solvers_8hpp.html)
+ [`ParNCMesh`](https://mfem.github.io/doxygen/html/classmfem_1_1ParMesh.html)
+ [`ParFiniteElementSpace`](https://mfem.github.io/doxygen/html/classmfem_1_1ParFiniteElementSpace.html)
+ [`ParGridFunction`](https://mfem.github.io/doxygen/html/classmfem_1_1ParGridFunction.html)
+ [`ParBilinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1ParBilinearForm.html) and [`ParLinearForm`](https://mfem.github.io/doxygen/html/classmfem_1_1ParLinearForm.html)
+ [`HypreParMatrix`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreParMatrix.html) and [`HypreParVector`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreParVector.html)
+ [`HypreSolver`](https://mfem.github.io/doxygen/html/classmfem_1_1HypreSolver.html) and other [hypre classes](https://mfem.github.io/doxygen/html/hypre_8hpp.html)
#### GPU and general device support
@@ -208,10 +199,10 @@ backends (CUDA, OCCA, RAJA, OpenMP, etc.) and an internal lightweight
device/host memory manager.
- The main device-relevant classes and sources are:
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
+ the [`MFEM_FORALL`](https://docs.mfem.org/html/forall_8hpp.html) macro
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
+ [`Device`](https://mfem.github.io/doxygen/html/device_8hpp.html)
+ [`MemoryManager`](https://mfem.github.io/doxygen/html/mem_manager_8hpp.html)
+ the [`MFEM_FORALL`](https://mfem.github.io/doxygen/html/forall_8hpp.html) macro
+ the [`cuda.hpp`](https://mfem.github.io/doxygen/html/cuda_8hpp.html) and [`occa.hpp`](https://mfem.github.io/doxygen/html/occa_8hpp.html) files
#### Utilities, building and documentation
- The `general/` directory contains C++ classes that serve as utilities for
@@ -219,7 +210,8 @@ device/host memory manager.
- The `config/` directory contains build-related files, both for the plain
Makefile and the CMake build options.
- The `doc/` directory contains configuration for the Doxygen code documentation
that can either be built locally or browsed online at https://docs.mfem.org.
that can either be built locally or browsed online at
https://mfem.github.io/doxygen/html/index.html.
#### Examples and tests
- `examples` and `miniapps` respectively gather simple and more fully-featured
@@ -439,10 +431,10 @@ The Pull Request (PR) approval process in MFEM is similar to the approval of pap
The current list of MFEM editors is:
- [@v-dobrev](https://github.com/v-dobrev) (Veselin Dobrev)
- [@tzanio](https://github.com/tzanio) (Tzanio Kolev)
- [@pazner](https://github.com/pazner) (Will Pazner)
- [@mlstowell](https://github.com/mlstowell) (Mark Stowell)
- @v-dobrev (Veselin Dobrev)
- @tzanio (Tzanio Kolev)
- @pazner (Will Pazner)
- @mlstowell (Mark Stowell)
**The responsibilities of the editors are:**
@@ -648,7 +640,7 @@ MFEM uses a `master`/`next`-branch workflow as described below:
```
- [ ] Create the release tarball and push to `mfem/releases`.
- [ ] Recreate the `next` branch as described in previous section.
- [ ] Update and push documentation to `mfem/doxygen`. Update the `README.md` file and the `html` link in the `mfem/doxygen` repo.
- [ ] Update and push documentation to `mfem/doxygen`.
- [ ] Update URL shortlinks:
- [ ] Create a shortlink at [http://bit.ly/](http://bit.ly/) for the release tarball, e.g. https://mfem.github.io/releases/mfem-3.1.tgz.
- [ ] (LLNL only) Add and commit the new shortlink in the `links` and `links-mfem` files of the internal `mfem/downloads` repo.
+27 -92
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@@ -7,10 +7,6 @@
https://mfem.org
This file provides a detailed description of how to build and install the MFEM
library. For a simple build, see the step-by-step instructions on the website
at https://mfem.org/building.
The MFEM library has a serial and an MPI-based parallel version, which largely
share the same code base. The only prerequisite for building the serial version
of MFEM is a (modern) C++ compiler, such as g++. The parallel version of MFEM
@@ -20,17 +16,13 @@ requires an MPI C++ compiler, as well as the following external libraries:
https://github.com/hypre-space/hypre
- METIS (a family of multilevel partitioning algorithms)
https://github.com/mfem/tpls
Note: We recommend our mirror of metis-4.0.3/5.1.0 above because the METIS
webpage, http://glaros.dtc.umn.edu/gkhome/metis/metis/overview, is often down
and we don't support yet the new repo https://github.com/KarypisLab/METIS.
http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
The hypre dependency can be downloaded as a tarball from GitHub or from the
project webpage https://www.llnl.gov/casc/hypre. For example, the 2.24.0 release
project webpage https://www.llnl.gov/casc/hypre. For example, the 2.20.0 release
of hypre is available at
https://github.com/hypre-space/hypre/archive/v2.24.0.tar.gz
https://github.com/hypre-space/hypre/archive/v2.20.0.tar.gz
The METIS dependency can be disabled but that is not generally recommended, see
the option MFEM_USE_METIS.
@@ -45,7 +37,7 @@ as CUDA, HIP, OCCA, OpenMP and RAJA.
https://developer.nvidia.com/cuda-toolkit
- HIP support requires an AMD GPU and an installation of the ROCm software stack
https://rocmdocs.amd.com
https://rocm.github.io/ROCmInstall.html#installing-from-amd-rocm-repositories
- OCCA support requires the OCCA library
https://libocca.org
@@ -66,8 +58,8 @@ following package managers:
- Spack, https://github.com/spack/spack
- OpenHPC, http://openhpc.community
- Conda-forge, https://conda-forge.org (pre-built binaries linked with
OpenMPI/MPICH, hypre, and METIS)
- Conda-forge, https://conda-forge.org (pre-built binaries linked with OpenMPI/MPICH, hypre, and METIS)
- Homebrew/Science, https://github.com/Homebrew/homebrew-science (deprecated)
We also recommend downloading and building the MFEM-based GLVis visualization
tool which can be used to visualize the meshes and solution in MFEM's examples
@@ -86,7 +78,7 @@ Parallel build:
CUDA build:
make cuda -j 4
(build for a specific compute capability: 'make cuda -j 4 CUDA_ARCH=sm_70')
(build for a specific compute capability: 'make cuda -j 4 CUDA_ARCH=sm_30')
HIP build:
make hip -j 4
@@ -337,6 +329,10 @@ MFEM_USE_SUNDIALS = YES/NO
library. When enabled, this option uses the SUNDIALS_* library options,
see below.
MFEM_USE_MESQUITE = YES/NO
Enable MFEM functionality based on the Mesquite library. When enabled, this
option uses the MESQUITE_* library options, see below.
MFEM_USE_SUITESPARSE = YES/NO
Enable MFEM functionality based on the SuiteSparse library. Currently, this
option adds the classes UMFPackSolver and KLUSolver (both sparse serial
@@ -471,21 +467,10 @@ MFEM_USE_HIOP = YES/NO
Enable the usage of HiOp (https://github.com/LLNL/hiop) in MFEM. HiOp is an
HPC solver for nonlinear optimization problems.
MFEM_USE_IPOPT = YES/NO
Enable the usage of Ipopt in MFEM.
MFEM_USE_CODIPACK = YES/NO
Enable automatic differentiation using the CoDiPack library.
www.scicomp.uni-kl.de/codi/
MFEM_USE_ALGOIM = YES/NO
Enable the usage of Algoim - a collection of high-order accurate numerical
methods and C++ algorithms for working with implicitly-defined geometry and
level set methods. The Algoim library requires the Blitz++ library. The MFEM
provides interface to Algoim v1. Thus, to check out the specific state use:
git checkout 9c9ca0ef094d8ab0390ed36367a1151b459bbe0a
https://algoim.github.io
MFEM_USE_ADFORWARD = YES/NO
Enable forward mode for AD packages. This option is valid
only if the AD package supports two modes (backward/forward).
@@ -535,16 +520,6 @@ MFEM_USE_MKL_CPARDISO = YES/NO
MFEM_USE_LAPACK=YES, verify that the MKL LAPACK libraries are used. The
OpenMP capabilities are disabled at link time.
MFEM_USE_MOONOLITH = YES/NO
Enables the ParMoonolith interface for parallel non-conforming, non-matching,
variational, volumetric mesh information transfer. It requires the variable
MOONOLITH_DIR=<path to installation> to be defined in the environment in
order to be used with the Makefile. Makefile users are also required to
install moonolith using the command `make install_all`, see
https://bitbucket.org/zulianp/par_moonolith for details.
Although Moonolith is an MPI-based library, both serial (MFEM_USE_MPI=NO) and
parallel (MFEM_USE_MPI=YES) versions of MFEM are supported.
MFEM_USE_CALIPER = YES/NO
Enables the interface to Caliper. Caliper is a library to integrate
performance profiling capabilities into applications. To use Caliper,
@@ -557,7 +532,7 @@ MFEM_USE_FMS = YES/NO
Enables support for the FMS library which consists of the DataCollection
sub-class mfem::FMSDataCollection for I/O in FMS formats, see the header file
fem/fmsdatacollection.hpp. In addition, this option enables in-memory
conversion routines between FMS's FmsDataCollection structure and MFEM's
convetion routines between FMS's FmsDataCollection structure and MFEM's
DataCollection class, see the header file fem/fmsconvert.hpp.
MFEM_USE_PARELAG = YES/NO
@@ -565,14 +540,6 @@ MFEM_USE_PARELAG = YES/NO
use ParELAG. In fact, ParELAG is dependent on MFEM. Therefore, this option
currently only concerns the miniapps.
MFEM_USE_ENZYME = YES/NO
Enables automatic differentiation support through the LLVM plugin Enzyme.
This requires the compiler to be set to clang (>=14.0.0). We also advise to
use the link time optimization (LTO) plugin, to enable functions that you
define over multiple files (compilation units) and want to be differentiated
automatically, to work. This requires to also use LLVM/LLD for linking.
Recommended options are in config/defaults.mk.
MFEM_BUILD_TAG = (any value)
An optional tag to characterize the build. Exported to config/config.mk.
Can be used to identify the MFEM build from other makefiles.
@@ -600,11 +567,10 @@ The specific libraries and their options are:
Versions: HYPRE >= 2.10.0b (HYPRE built without CUDA)
HYPRE >= 2.20.0 (HYPRE built with '--enable-mixedint')
HYPRE >= 2.22.1 (HYPRE built with CUDA)
HYPRE >= 2.23.0 (HYPRE built with HIP)
- METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
MFEM_USE_METIS_5 = YES (default is to use METIS 4).
URL: https://github.com/mfem/tpls (MFEM mirror, see above)
URL: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
Options: METIS_OPT, METIS_LIB.
Versions: METIS 4.0.3 or 5.1.0.
@@ -635,6 +601,11 @@ The specific libraries and their options are:
Options: SUNDIALS_OPT, SUNDIALS_LIB.
Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA support.
- Mesquite (optional), used when MFEM_USE_MESQUITE = YES.
URL: http://trilinos.org/oldsite/packages/mesquite
Options: MESQUITE_OPT, MESQUITE_LIB.
The Mesquite support is deprecated and will be removed in the future.
- SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
Options: SUITESPARSE_OPT, SUITESPARSE_LIB.
@@ -668,8 +639,7 @@ The specific libraries and their options are:
C++ compiler that supports the C++-14 standard. For additional requirements
and dependencies of specific modules, see the Ginkgo webpage below.
URL: https://ginkgo-project.github.io
Options: GINKGO_OPT, GINKGO_LIB, GINKGO_DIR, GINKGO_BUILD_TYPE (Release or
Debug).
Options: GINKGO_OPT, GINKGO_LIB, GINKGO_DIR, GINKGO_BUILD_TYPE (Release or Debug).
Versions: Ginkgo >= 1.4.0.
- AmgX (optional), used when MFEM_USE_AMGX = YES.
@@ -734,19 +704,14 @@ The specific libraries and their options are:
URL: https://scorec.rpi.edu/pumi
https://github.com/SCOREC/core
Options: PUMI_OPT, PUMI_LIB.
Versions: PUMI >= 2.2.6.
Versions: PUMI == 2.2.3.
- HiOp (optional), used when MFEM_USE_HIOP = YES.
URL: https://github.com/LLNL/hiop
Options: HIOP_OPT, HIOP_LIB.
Versions: HIOP >= 0.4.6.
- Ipopt (optional), used when MFEM_USE_IPOPT = YES.
URL: https://github.com/coin-or/Ipopt
Options: IPOPT_OPT, IPOPT_LIB.
Versions: IPOPT >= 3.14
- CoDiPack (optional), used with MFEM_USE_CODIPACK = YES
- CoDiPack (optiobal), used with MFEM_USE_CODIPACK = YES
URL: https://www.scicomp.uni-kl.de/codi/
Options: CODIPACK_OPT
Versions: 1.9.3
@@ -761,20 +726,6 @@ The specific libraries and their options are:
Options: GSLIB_OPT, GSLIB_LIB.
Versions: GSLIB >= 1.0.7.
- ALGOIM (optional), used when MFEM_USE_ALGOIM=YES. The library provides only
headers so it just needs to be downloaded at the same level as MFEM. Download
the specific version we use as:
"git clone https://github.com/algoim/algoim.git;
git checkout 9c9ca0ef094d8ab0390ed36367a1151b459bbe0a"
ALGOIM depends on BLITZ and the library must be built prior to the MFEM build.
Download v1.0.2, untar it at the same level as MFEM and create a symbolic link:
"ln -s blitz-1.0.2 blitz".
Build Blitz using CMake as:
"cmake . -DCMAKE_INSTALL_PREFIX=.; make lib; make install"
URL: https://github.com/blitzpp/blitz/archive/refs/tags/1.0.2.tar.gz
Options: BLITZ_OPT, BLITZ_LIB
Versions: BLITZ = 1.0.2
- MKL CPardiso (optional), used when MFEM_USE_MKL_CPARDISO = YES.
URL: https://software.intel.com/content/www/us/en/develop/tools/math-kernel-library.html
Options: MKL_CPARDISO_OPT, MKL_CPARDISO_LIB.
@@ -786,7 +737,7 @@ The specific libraries and their options are:
Versions: CUDA >= 10.1.168.
- HIP (optional), used when MFEM_USE_HIP = YES.
URL: https://rocmdocs.amd.com
URL: https://rocm.github.io/ROCmInstall.html
Options: HIP_CXX, HIP_ARCH, HIP_OPT, HIP_LIB.
- OCCA (optional), used when MFEM_USE_OCCA = YES.
@@ -798,18 +749,13 @@ The specific libraries and their options are:
URL: https://github.com/CEED/libCEED
https://ceed.exascaleproject.org/libceed
Options: CEED_DIR, CEED_OPT, CEED_LIB.
Versions: libCEED >= 0.10.
Versions: libCEED >= 0.8.
- RAJA (optional), used when MFEM_USE_RAJA = YES.
Beginning with MFEM v4.5.1, only RAJA v2022.10.3+ is supported.
Beginning with MFEM v4.3, only RAJA v0.14.0+ is supported.
URL: https://github.com/LLNL/RAJA
Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
Versions: RAJA >= 2022.10.3.
- Moonolith (optional), use when MFEM_USE_MOONOLITH = YES.
URL: https://bitbucket.org/zulianp/par_moonolith
Options: MOONOLITH_DIR
Versions: MOONOLITH >= 1.1.0.
Versions: RAJA >= 0.14.0.
- Caliper (optional), used when MFEM_USE_CALIPER = YES.
URL: https://github.com/LLNL/Caliper
@@ -851,12 +797,6 @@ The specific libraries and their options are:
URL: https://github.com/LLNL/parelag
Options: PARELAG_DIR, PARELAG_OPT, PARELAG_LIB.
- Enzyme, used when MFEM_USE_ENZYME = YES. Requires LLVM/Clang >= 14.0.0.
URL: https://github.com/EnzymeAD/Enzyme
Options: ENZYME_DIR, ENZYME_OPT, ENZYME_LIB.
Versions: Enzyme >= v0.0.33.
Building with CMake
===================
The MFEM build system consists of two steps: configuration and compilation.
@@ -968,6 +908,7 @@ MFEM_USE_LEGACY_OPENMP
MFEM_USE_OPENMP
MFEM_USE_MEMALLOC
MFEM_TIMER_TYPE - Set automatically, can be overwritten.
MFEM_USE_MESQUITE
MFEM_USE_SUITESPARSE
MFEM_USE_SUPERLU
MFEM_USE_MUMPS
@@ -980,22 +921,18 @@ MFEM_USE_MPFR
MFEM_USE_ZLIB
MFEM_USE_PUMI
MFEM_USE_HIOP
MFEM_USE_IPOPT
MFEM_USE_CODIPACK
MFEM_USE_ADFORWARD
MFEM_USE_CUDA
MFEM_USE_HIP
MFEM_USE_OCCA
MFEM_USE_CEED
MFEM_USE_RAJA
MFEM_USE_UMPIRE
MFEM_USE_SIDRE
MFEM_USE_MOONOLITH
MFEM_USE_CALIPER
MFEM_USE_FMS
MFEM_USE_BENCHMARK
MFEM_USE_PARELAG
MFEM_USE_ENZYME
The following options are CMake specific:
@@ -1033,6 +970,7 @@ The CMake build system adds auto-detection for the following packages/libraries:
- HYPRE
- METIS - The option MFEM_USE_METIS_5 is auto-detected.
- ParMETIS
- MESQUITE
- SuiteSparse
- SuperLUDist, STRUMPACK
- Ginkgo
@@ -1044,18 +982,15 @@ The CMake build system adds auto-detection for the following packages/libraries:
- POSIXCLOCKS
- PUMI
- HIOP
- IPOPT
- CoDiPack
- OCCA
- RAJA
- UMPIRE
- AXOM - Used when MFEM_USE_SIDRE is enabled
- MOONOLITH
- CALIPER
- FMS
- BENCHMARK
- ParELAG
- Enzyme
The following built-in CMake packages are also used:
+1 -1
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@@ -1,6 +1,6 @@
BSD 3-Clause License
Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC
Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC
All rights reserved.
Redistribution and use in source and binary forms, with or without
+12 -19
View File
@@ -7,24 +7,21 @@
https://mfem.org
[MFEM](https://mfem.org) is a modular parallel C++ library for finite element
methods. Its goal is to enable high-performance scalable finite element
discretization research and application development on a wide variety of
platforms, ranging from laptops to supercomputers.
MFEM is a modular parallel C++ library for finite element methods. Its goal is
to enable high-performance scalable finite element discretization research and
application development on a wide variety of platforms, ranging from laptops to
supercomputers.
We welcome contributions and feedback from the community. Please see the file
[CONTRIBUTING.md](CONTRIBUTING.md) for additional details about our development
process.
CONTRIBUTING.md for additional details about our development process.
* For building instructions, see the file [INSTALL](INSTALL), or type "make help".
* For building instructions, see the file INSTALL, or type "make help".
* Copyright and licensing information can be found in files [LICENSE](LICENSE) and [NOTICE](NOTICE).
* Copyright and licensing information can be found in files LICENSE and NOTICE.
* The best starting point for new users interested in MFEM's features is to
review the examples and miniapps at https://mfem.org/examples.
* Instructions for learning with Docker are in [config/docker](config/docker).
Conceptually, MFEM can be viewed as a finite element toolbox that provides the
building blocks for developing finite element algorithms in a manner similar to
that of MATLAB for linear algebra methods. In particular, MFEM provides support
@@ -61,16 +58,12 @@ solvers from the hypre library. Comprehensive support for other external
packages, e.g. PETSc, SUNDIALS and libCEED is also included, giving access to
additional linear and nonlinear solvers, preconditioners, time integrators, etc.
For examples of using MFEM, see the [examples/](examples) and [miniapps/](miniapps)
directories, as well as the OpenGL visualization tool GLVis which is available
at https://glvis.org.
## License
For examples of using MFEM, see the examples/ and miniapps/ directories, as well
as the OpenGL visualization tool GLVis which is available at https://glvis.org.
MFEM is distributed under the terms of the BSD-3 license. All new contributions
must be made under this license. See [LICENSE](LICENSE) and [NOTICE](NOTICE) for
details.
must be made under this license. See LICENSE and NOTICE for details.
SPDX-License-Identifier: BSD-3-Clause <br>
LLNL Release Number: LLNL-CODE-806117 <br>
SPDX-License-Identifier: BSD-3-Clause
LLNL Release Number: LLNL-CODE-806117
DOI: 10.11578/dc.20171025.1248
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+4
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@@ -212,6 +212,10 @@ IF (DEFINED TPL_ENABLE_SUNDIALS)
SET(MFEM_USE_SUNDIALS ${TPL_ENABLE_SUNDIALS} CACHE BOOL "Enable SUNDIALS usage" FORCE)
ENDIF()
IF (DEFINED TPL_ENABLE_MESQUITE)
SET(MFEM_USE_MESQUITE ${TPL_ENABLE_MESQUITE} CACHE BOOL "Enable MESQUITE usage" FORCE)
ENDIF()
IF (DEFINED TPL_ENABLE_SUITESPARSE)
SET(MFEM_USE_SUITESPARSE ${TPL_ENABLE_SUITESPARSE} CACHE BOOL "Enable SuiteSparse usage" FORCE)
ENDIF()
+2 -5
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -29,6 +29,7 @@ set(MFEM_USE_LEGACY_OPENMP @MFEM_USE_LEGACY_OPENMP@)
set(MFEM_USE_MEMALLOC @MFEM_USE_MEMALLOC@)
set(MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@)
set(MFEM_USE_SUNDIALS @MFEM_USE_SUNDIALS@)
set(MFEM_USE_MESQUITE @MFEM_USE_MESQUITE@)
set(MFEM_USE_SUITESPARSE @MFEM_USE_SUITESPARSE@)
set(MFEM_USE_SUPERLU @MFEM_USE_SUPERLU@)
set(MFEM_USE_MUMPS @MFEM_USE_MUMPS@)
@@ -36,7 +37,6 @@ set(MFEM_USE_STRUMPACK @MFEM_USE_STRUMPACK@)
set(MFEM_USE_GINKGO @MFEM_USE_GINKGO@)
set(MFEM_USE_AMGX @MFEM_USE_AMGX@)
set(MFEM_USE_HIOP @MFEM_USE_HIOP@)
set(MFEM_USE_IPOPT @MFEM_USE_IPOPT@)
set(MFEM_USE_GNUTLS @MFEM_USE_GNUTLS@)
set(MFEM_USE_GSLIB @MFEM_USE_GSLIB@)
set(MFEM_USE_NETCDF @MFEM_USE_NETCDF@)
@@ -54,14 +54,11 @@ set(MFEM_USE_CEED @MFEM_USE_CEED@)
set(MFEM_USE_UMPIRE @MFEM_USE_UMPIRE@)
set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
set(MFEM_USE_MOONOLITH @MFEM_USE_MOONOLITH@)
set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
set(MFEM_USE_BENCHMARK @MFEM_USE_BENCHMARK@)
set(MFEM_USE_PARELAG @MFEM_USE_PARELAG@)
set(MFEM_USE_ENZYME @MFEM_USE_ENZYME@)
set(MFEM_CXX_COMPILER "@CMAKE_CXX_COMPILER@")
set(MFEM_CXX_FLAGS "@CMAKE_CXX_FLAGS@")
+4 -13
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@@ -1,4 +1,4 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -77,6 +77,9 @@
// Internal MFEM option: enable group/batch allocation for some small objects.
#cmakedefine MFEM_USE_MEMALLOC
// Enable MFEM functionality based on the Mesquite library.
#cmakedefine MFEM_USE_MESQUITE
// Enable MFEM functionality based on the SuiteSparse library.
#cmakedefine MFEM_USE_SUITESPARSE
@@ -125,15 +128,9 @@
// Enable MFEM functionality based on the PUMI library
#cmakedefine MFEM_USE_PUMI
// Enable MFEM functionality based on the Moonolith library
#cmakedefine MFEM_USE_MOONOLITH
// Enable MFEM functionality based on the HiOp library
#cmakedefine MFEM_USE_HIOP
// Enable MFEM functionality based on the Ipopt library
#cmakedefine MFEM_USE_IPOPT
// Build the GPU/CUDA-enabled version of the MFEM library.
// Requires a CUDA compiler (nvcc).
#cmakedefine MFEM_USE_CUDA
@@ -160,9 +157,6 @@
// Enable MFEM functionality based on the Caliper library
#cmakedefine MFEM_USE_CALIPER
// Enable MFEM functionality based on the Algoim library
#cmakedefine MFEM_USE_ALGOIM
// Which library functions to use in class StopWatch for measuring time.
// For a list of the available options, see INSTALL.
// If not defined, an option is selected automatically.
@@ -190,7 +184,4 @@
// Enable MFEM functionality based on the Google Benchmark library.
#cmakedefine MFEM_USE_BENCHMARK
// Enable Enzyme for AD
#cmakedefine MFEM_USE_ENZYME
#endif // MFEM_CONFIG_HEADER
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
-22
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@@ -1,22 +0,0 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Defines the following variables:
# - BLITZ_FOUND
# - BLITZ_LIBRARIES
# - BLITZ_INCLUDE_DIRS
include(MfemCmakeUtilities)
mfem_find_package(Blitz BLITZ BLITZ_DIR
"include" "blitz/blitz.h"
"lib" "blitz"
"Paths to headers required by Blitz."
"Libraries required by Blitz.")
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+5 -20
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -16,22 +16,7 @@
include(MfemCmakeUtilities)
mfem_find_package(Caliper CALIPER CALIPER_DIR
"include" "caliper/cali.h"
"lib" "caliper"
"Paths to headers required by Caliper."
"Libraries required by Caliper.")
# Append adiak path/lib if the user provided ADIAK_DIR
if(ADIAK_DIR AND EXISTS ${ADIAK_DIR})
find_package(adiak NO_DEFAULT_PATH REQUIRED PATHS ${ADIAK_DIR}/lib/cmake/adiak ${ADIAK_DIR})
list(APPEND CALIPER_INCLUDE_DIRS ${adiak_INCLUDE_DIRS})
list(APPEND CALIPER_LIBRARIES ${adiak_LIBRARIES})
endif()
# Append gotcha path/lib if the user provided GOTCHA_DIR
if(GOTCHA_DIR AND EXISTS ${GOTCHA_DIR})
find_package(gotcha NO_DEFAULT_PATH REQUIRED PATHS ${GOTCHA_DIR}/lib/cmake/gotcha ${GOTCHA_DIR})
list(APPEND CALIPER_INCLUDE_DIRS ${gotcha_INCLUDE_DIRS})
list(APPEND CALIPER_LIBRARIES ${gotcha_LIBRARIES})
endif()
"include" "caliper/cali.h"
"lib" "caliper"
"Paths to headers required by Caliper."
"Libraries required by Caliper.")
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
-27
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@@ -1,27 +0,0 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
message(STATUS "Looking for ENZYME ...")
message(STATUS " in ENZYME_DIR = ${ENZYME_DIR}")
# Make sure the directory and version combination works. Do nothing otherwise.
if(EXISTS "${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
message(STATUS "Found ENZYME: ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
# Set ENZYME_FOUND
set(ENZYME_FOUND TRUE CACHE BOOL "ENZYME was found." FORCE)
# Set CXX flags to accommodate the Enzyme Clang plugin
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Xclang -load -Xclang ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so -mllvm -enzyme-loose-types=1")
set(MFEM_USE_ENZYME YES)
else()
endif()
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+2 -2
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -15,5 +15,5 @@
# - GSLIB_INCLUDE_DIRS
include(MfemCmakeUtilities)
mfem_find_package(GSLIB GSLIB GSLIB_DIR "include" gslib.h "lib" gs
mfem_find_package(gslib GSLIB GSLIB_DIR "include" gslib.h "lib" gs
"Paths to headers required by GSLIB." "Libraries required by GSLIB.")
-70
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@@ -1,70 +0,0 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Defines the following variables:
# - HDF5_FOUND - If HDF5 was found
# - HDF5_LIBRARIES - The HDF5 libraries
# - HDF5_INCLUDE_DIRS - The HDF5 include directories
# NOTE: Using this FindHDF5.cmake instead of the CMake provided version may lead
# to issues with some TPL libraries that depend (or may depend) on HDF5.
# For this reason, we should consider removing this file, or at least
# making it use the CMake provided version by default and apply the logic
# below only when specifically requested by a user. -V. Dobrev
# First Check for HDF5_DIR
if(NOT HDF5_DIR)
message(FATAL_ERROR
"Could not find HDF5. HDF5 support needs explicit HDF5_DIR")
endif()
if (NOT HDF5_FIND_QUIETLY)
message(STATUS "Looking for HDF5 ...")
message(STATUS " in HDF5_DIR = ${HDF5_DIR}")
endif()
# Find includes
find_path( HDF5_INCLUDE_DIRS hdf5.h
PATHS ${HDF5_DIR}/include/
NO_DEFAULT_PATH
NO_CMAKE_ENVIRONMENT_PATH
NO_CMAKE_PATH
NO_SYSTEM_ENVIRONMENT_PATH
NO_CMAKE_SYSTEM_PATH)
find_library( __HDF5_LIBRARY NAMES hdf5 libhdf5 libhdf5_D libhdf5_debug
PATHS ${HDF5_DIR}/lib
NO_DEFAULT_PATH
NO_CMAKE_ENVIRONMENT_PATH
NO_CMAKE_PATH
NO_SYSTEM_ENVIRONMENT_PATH
NO_CMAKE_SYSTEM_PATH)
find_library( __HDF5_HL_LIBRARY NAMES hdf5_hl libhdf5_hl libhdf5_hl_D libhdf5_hl_debug
PATHS ${HDF5_DIR}/lib
NO_DEFAULT_PATH
NO_CMAKE_ENVIRONMENT_PATH
NO_CMAKE_PATH
NO_SYSTEM_ENVIRONMENT_PATH
NO_CMAKE_SYSTEM_PATH)
set(HDF5_LIBRARIES ${__HDF5_HL_LIBRARY} ${__HDF5_LIBRARY})
include(FindPackageHandleStandardArgs)
# Handle the QUIETLY and REQUIRED arguments and set HDF5_FOUND to TRUE if all
# listed variables are TRUE
find_package_handle_standard_args(HDF5
" *** HDF5 not found. Please set HDF5_DIR."
HDF5_LIBRARIES
HDF5_INCLUDE_DIRS
__HDF5_LIBRARY
__HDF5_HL_LIBRARY)
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+692
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@@ -0,0 +1,692 @@
###############################################################################
# FindHIP.cmake
###############################################################################
include(CheckCXXCompilerFlag)
###############################################################################
# SET: Variable defaults
###############################################################################
# User defined flags
set(HIP_HIPCC_FLAGS "" CACHE STRING "Semicolon delimited flags for HIPCC")
set(HIP_HCC_FLAGS "" CACHE STRING "Semicolon delimited flags for HCC")
set(HIP_CLANG_FLAGS "" CACHE STRING "Semicolon delimited flags for CLANG")
set(HIP_NVCC_FLAGS "" CACHE STRING "Semicolon delimted flags for NVCC")
mark_as_advanced(HIP_HIPCC_FLAGS HIP_HCC_FLAGS HIP_CLANG_FLAGS HIP_NVCC_FLAGS)
set(_hip_configuration_types ${CMAKE_CONFIGURATION_TYPES} ${CMAKE_BUILD_TYPE} Debug MinSizeRel Release RelWithDebInfo)
list(REMOVE_DUPLICATES _hip_configuration_types)
foreach(config ${_hip_configuration_types})
string(TOUPPER ${config} config_upper)
set(HIP_HIPCC_FLAGS_${config_upper} "" CACHE STRING "Semicolon delimited flags for HIPCC")
set(HIP_HCC_FLAGS_${config_upper} "" CACHE STRING "Semicolon delimited flags for HCC")
set(HIP_CLANG_FLAGS_${config_upper} "" CACHE STRING "Semicolon delimited flags for CLANG")
set(HIP_NVCC_FLAGS_${config_upper} "" CACHE STRING "Semicolon delimited flags for NVCC")
mark_as_advanced(HIP_HIPCC_FLAGS_${config_upper} HIP_HCC_FLAGS_${config_upper} HIP_CLANG_FLAGS_${config_upper} HIP_NVCC_FLAGS_${config_upper})
endforeach()
option(HIP_HOST_COMPILATION_CPP "Host code compilation mode" ON)
option(HIP_VERBOSE_BUILD "Print out the commands run while compiling the HIP source file. With the Makefile generator this defaults to VERBOSE variable specified on the command line, but can be forced on with this option." OFF)
mark_as_advanced(HIP_HOST_COMPILATION_CPP)
###############################################################################
# FIND: HIP and associated helper binaries
###############################################################################
get_filename_component(_IMPORT_PREFIX "${CMAKE_CURRENT_LIST_DIR}/../" REALPATH)
# HIP is supported on Linux only
if(UNIX AND NOT APPLE AND NOT CYGWIN)
# Search for HIP installation
if(NOT HIP_ROOT_DIR)
# Search in user specified path first
find_path(
HIP_ROOT_DIR
NAMES bin/hipconfig
PATHS
"$ENV{ROCM_PATH}/hip"
ENV HIP_PATH
${_IMPORT_PREFIX}
/opt/rocm/hip
DOC "HIP installed location"
NO_DEFAULT_PATH
)
if(NOT EXISTS ${HIP_ROOT_DIR})
if(HIP_FIND_REQUIRED)
message(FATAL_ERROR "Specify HIP_ROOT_DIR")
elseif(NOT HIP_FIND_QUIETLY)
message("HIP_ROOT_DIR not found or specified")
endif()
endif()
# And push it back to the cache
set(HIP_ROOT_DIR ${HIP_ROOT_DIR} CACHE PATH "HIP installed location" FORCE)
endif()
# Find HIPCC executable
find_program(
HIP_HIPCC_EXECUTABLE
NAMES hipcc
PATHS
"${HIP_ROOT_DIR}"
ENV ROCM_PATH
ENV HIP_PATH
/opt/rocm
/opt/rocm/hip
PATH_SUFFIXES bin
NO_DEFAULT_PATH
)
if(NOT HIP_HIPCC_EXECUTABLE)
# Now search in default paths
find_program(HIP_HIPCC_EXECUTABLE hipcc)
endif()
mark_as_advanced(HIP_HIPCC_EXECUTABLE)
# Find HIPCONFIG executable
find_program(
HIP_HIPCONFIG_EXECUTABLE
NAMES hipconfig
PATHS
"${HIP_ROOT_DIR}"
ENV ROCM_PATH
ENV HIP_PATH
/opt/rocm
/opt/rocm/hip
PATH_SUFFIXES bin
NO_DEFAULT_PATH
)
if(NOT HIP_HIPCONFIG_EXECUTABLE)
# Now search in default paths
find_program(HIP_HIPCONFIG_EXECUTABLE hipconfig)
endif()
mark_as_advanced(HIP_HIPCONFIG_EXECUTABLE)
# Find HIPCC_CMAKE_LINKER_HELPER executable
find_program(
HIP_HIPCC_CMAKE_LINKER_HELPER
NAMES hipcc_cmake_linker_helper
PATHS
"${HIP_ROOT_DIR}"
ENV ROCM_PATH
ENV HIP_PATH
/opt/rocm
/opt/rocm/hip
PATH_SUFFIXES bin
NO_DEFAULT_PATH
)
if(NOT HIP_HIPCC_CMAKE_LINKER_HELPER)
# Now search in default paths
find_program(HIP_HIPCC_CMAKE_LINKER_HELPER hipcc_cmake_linker_helper)
endif()
mark_as_advanced(HIP_HIPCC_CMAKE_LINKER_HELPER)
if(HIP_HIPCONFIG_EXECUTABLE AND NOT HIP_VERSION)
# Compute the version
execute_process(
COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --version
OUTPUT_VARIABLE _hip_version
ERROR_VARIABLE _hip_error
OUTPUT_STRIP_TRAILING_WHITESPACE
ERROR_STRIP_TRAILING_WHITESPACE
)
if(NOT _hip_error)
set(HIP_VERSION ${_hip_version} CACHE STRING "Version of HIP as computed from hipcc")
else()
set(HIP_VERSION "0.0.0" CACHE STRING "Version of HIP as computed by FindHIP()")
endif()
mark_as_advanced(HIP_VERSION)
endif()
if(HIP_VERSION)
string(REPLACE "." ";" _hip_version_list "${HIP_VERSION}")
list(GET _hip_version_list 0 HIP_VERSION_MAJOR)
list(GET _hip_version_list 1 HIP_VERSION_MINOR)
list(GET _hip_version_list 2 HIP_VERSION_PATCH)
set(HIP_VERSION_STRING "${HIP_VERSION}")
endif()
if(HIP_HIPCONFIG_EXECUTABLE AND NOT HIP_PLATFORM)
# Compute the platform
execute_process(
COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --platform
OUTPUT_VARIABLE _hip_platform
OUTPUT_STRIP_TRAILING_WHITESPACE
)
set(HIP_PLATFORM ${_hip_platform} CACHE STRING "HIP platform as computed by hipconfig")
mark_as_advanced(HIP_PLATFORM)
endif()
if(HIP_HIPCONFIG_EXECUTABLE AND NOT HIP_COMPILER)
# Compute the compiler
execute_process(
COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --compiler
OUTPUT_VARIABLE _hip_compiler
OUTPUT_STRIP_TRAILING_WHITESPACE
)
set(HIP_COMPILER ${_hip_compiler} CACHE STRING "HIP compiler as computed by hipconfig")
mark_as_advanced(HIP_COMPILER)
endif()
if(HIP_HIPCONFIG_EXECUTABLE AND NOT HIP_RUNTIME)
# Compute the runtime
execute_process(
COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --runtime
OUTPUT_VARIABLE _hip_runtime
OUTPUT_STRIP_TRAILING_WHITESPACE
)
set(HIP_RUNTIME ${_hip_runtime} CACHE STRING "HIP runtime as computed by hipconfig")
mark_as_advanced(HIP_RUNTIME)
endif()
endif()
include(FindPackageHandleStandardArgs)
find_package_handle_standard_args(
HIP
REQUIRED_VARS
HIP_ROOT_DIR
HIP_HIPCC_EXECUTABLE
HIP_HIPCONFIG_EXECUTABLE
HIP_PLATFORM
HIP_COMPILER
HIP_RUNTIME
VERSION_VAR HIP_VERSION
)
###############################################################################
# Set HIP CMAKE Flags
###############################################################################
# Copy the invocation styles from CXX to HIP
set(CMAKE_HIP_ARCHIVE_CREATE ${CMAKE_CXX_ARCHIVE_CREATE})
set(CMAKE_HIP_ARCHIVE_APPEND ${CMAKE_CXX_ARCHIVE_APPEND})
set(CMAKE_HIP_ARCHIVE_FINISH ${CMAKE_CXX_ARCHIVE_FINISH})
set(CMAKE_SHARED_LIBRARY_SONAME_HIP_FLAG ${CMAKE_SHARED_LIBRARY_SONAME_CXX_FLAG})
set(CMAKE_SHARED_LIBRARY_CREATE_HIP_FLAGS ${CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS})
set(CMAKE_SHARED_LIBRARY_HIP_FLAGS ${CMAKE_SHARED_LIBRARY_CXX_FLAGS})
#set(CMAKE_SHARED_LIBRARY_LINK_HIP_FLAGS ${CMAKE_SHARED_LIBRARY_LINK_CXX_FLAGS})
set(CMAKE_SHARED_LIBRARY_RUNTIME_HIP_FLAG ${CMAKE_SHARED_LIBRARY_RUNTIME_CXX_FLAG})
set(CMAKE_SHARED_LIBRARY_RUNTIME_HIP_FLAG_SEP ${CMAKE_SHARED_LIBRARY_RUNTIME_CXX_FLAG_SEP})
set(CMAKE_SHARED_LIBRARY_LINK_STATIC_HIP_FLAGS ${CMAKE_SHARED_LIBRARY_LINK_STATIC_CXX_FLAGS})
set(CMAKE_SHARED_LIBRARY_LINK_DYNAMIC_HIP_FLAGS ${CMAKE_SHARED_LIBRARY_LINK_DYNAMIC_CXX_FLAGS})
set(HIP_CLANG_PARALLEL_BUILD_COMPILE_OPTIONS "")
set(HIP_CLANG_PARALLEL_BUILD_LINK_OPTIONS "")
if("${HIP_COMPILER}" STREQUAL "nvcc")
# Set the CMake Flags to use the nvcc Compiler.
set(CMAKE_HIP_CREATE_SHARED_LIBRARY "${HIP_HIPCC_CMAKE_LINKER_HELPER} <CMAKE_SHARED_LIBRARY_CXX_FLAGS> <LANGUAGE_COMPILE_FLAGS> <LINK_FLAGS> <CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS> <SONAME_FLAG><TARGET_SONAME> -o <TARGET> <OBJECTS> <LINK_LIBRARIES>")
set(CMAKE_HIP_CREATE_SHARED_MODULE "${HIP_HIPCC_CMAKE_LINKER_HELPER} <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> <SONAME_FLAG><TARGET_SONAME> -o <TARGET> <LINK_LIBRARIES> -shared" )
set(CMAKE_HIP_LINK_EXECUTABLE "${HIP_HIPCC_CMAKE_LINKER_HELPER} <FLAGS> <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> -o <TARGET> <LINK_LIBRARIES>")
elseif("${HIP_COMPILER}" STREQUAL "hcc")
# Set the CMake Flags to use the hcc Compiler.
set(CMAKE_HIP_CREATE_SHARED_LIBRARY "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HCC_HOME} <CMAKE_SHARED_LIBRARY_CXX_FLAGS> <LANGUAGE_COMPILE_FLAGS> <LINK_FLAGS> <CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS> <SONAME_FLAG><TARGET_SONAME> -o <TARGET> <OBJECTS> <LINK_LIBRARIES>")
set(CMAKE_HIP_CREATE_SHARED_MODULE "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HCC_HOME} <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> <SONAME_FLAG><TARGET_SONAME> -o <TARGET> <LINK_LIBRARIES> -shared" )
set(CMAKE_HIP_LINK_EXECUTABLE "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HCC_HOME} <FLAGS> <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> -o <TARGET> <LINK_LIBRARIES>")
elseif("${HIP_COMPILER}" STREQUAL "clang")
#Number of parallel jobs by default is 1
if(NOT DEFINED HIP_CLANG_NUM_PARALLEL_JOBS)
set(HIP_CLANG_NUM_PARALLEL_JOBS 1)
endif()
#Add support for parallel build and link
if(${CMAKE_CXX_COMPILER_ID} STREQUAL "Clang")
check_cxx_compiler_flag("-parallel-jobs=1" HIP_CLANG_SUPPORTS_PARALLEL_JOBS)
endif()
if(HIP_CLANG_NUM_PARALLEL_JOBS GREATER 1)
if(${HIP_CLANG_SUPPORTS_PARALLEL_JOBS})
set(HIP_CLANG_PARALLEL_BUILD_COMPILE_OPTIONS "-Wno-format-nonliteral -parallel-jobs=${HIP_CLANG_NUM_PARALLEL_JOBS}")
set(HIP_CLANG_PARALLEL_BUILD_LINK_OPTIONS "-parallel-jobs=${HIP_CLANG_NUM_PARALLEL_JOBS}")
else()
message("clang compiler doesn't support parallel jobs")
endif()
endif()
# Set the CMake Flags to use the HIP-Clang Compiler.
set(CMAKE_HIP_CREATE_SHARED_LIBRARY "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HIP_CLANG_PATH} ${HIP_CLANG_PARALLEL_BUILD_LINK_OPTIONS} <CMAKE_SHARED_LIBRARY_CXX_FLAGS> <LANGUAGE_COMPILE_FLAGS> <LINK_FLAGS> <CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS> <SONAME_FLAG><TARGET_SONAME> -o <TARGET> <OBJECTS> <LINK_LIBRARIES>")
set(CMAKE_HIP_CREATE_SHARED_MODULE "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HIP_CLANG_PATH} ${HIP_CLANG_PARALLEL_BUILD_LINK_OPTIONS} <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> <SONAME_FLAG><TARGET_SONAME> -o <TARGET> <LINK_LIBRARIES> -shared" )
set(CMAKE_HIP_LINK_EXECUTABLE "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HIP_CLANG_PATH} ${HIP_CLANG_PARALLEL_BUILD_LINK_OPTIONS} <FLAGS> <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> -o <TARGET> <LINK_LIBRARIES>")
if("${HIP_RUNTIME}" STREQUAL "rocclr")
if(TARGET host)
message(STATUS "host interface - found")
set(HIP_HOST_INTERFACE host)
endif()
endif()
endif()
###############################################################################
# MACRO: Locate helper files
###############################################################################
macro(HIP_FIND_HELPER_FILE _name _extension)
set(_hip_full_name "${_name}.${_extension}")
get_filename_component(CMAKE_CURRENT_LIST_DIR "${CMAKE_CURRENT_LIST_FILE}" PATH)
set(HIP_${_name} "${CMAKE_CURRENT_LIST_DIR}/FindHIP/${_hip_full_name}")
if(NOT EXISTS "${HIP_${_name}}")
set(error_message "${_hip_full_name} not found in ${CMAKE_CURRENT_LIST_DIR}/FindHIP")
if(HIP_FIND_REQUIRED)
message(FATAL_ERROR "${error_message}")
else()
if(NOT HIP_FIND_QUIETLY)
message(STATUS "${error_message}")
endif()
endif()
endif()
# Set this variable as internal, so the user isn't bugged with it.
set(HIP_${_name} ${HIP_${_name}} CACHE INTERNAL "Location of ${_full_name}" FORCE)
endmacro()
###############################################################################
hip_find_helper_file(run_make2cmake cmake)
hip_find_helper_file(run_hipcc cmake)
###############################################################################
###############################################################################
# MACRO: Reset compiler flags
###############################################################################
macro(HIP_RESET_FLAGS)
unset(HIP_HIPCC_FLAGS)
unset(HIP_HCC_FLAGS)
unset(HIP_CLANG_FLAGS)
unset(HIP_NVCC_FLAGS)
foreach(config ${_hip_configuration_types})
string(TOUPPER ${config} config_upper)
unset(HIP_HIPCC_FLAGS_${config_upper})
unset(HIP_HCC_FLAGS_${config_upper})
unset(HIP_CLANG_FLAGS_${config_upper})
unset(HIP_NVCC_FLAGS_${config_upper})
endforeach()
endmacro()
###############################################################################
# MACRO: Separate the options from the sources
###############################################################################
macro(HIP_GET_SOURCES_AND_OPTIONS _sources _cmake_options _hipcc_options _hcc_options _clang_options _nvcc_options)
set(${_sources})
set(${_cmake_options})
set(${_hipcc_options})
set(${_hcc_options})
set(${_clang_options})
set(${_nvcc_options})
set(_hipcc_found_options FALSE)
set(_hcc_found_options FALSE)
set(_clang_found_options FALSE)
set(_nvcc_found_options FALSE)
foreach(arg ${ARGN})
if("x${arg}" STREQUAL "xHIPCC_OPTIONS")
set(_hipcc_found_options TRUE)
set(_hcc_found_options FALSE)
set(_clang_found_options FALSE)
set(_nvcc_found_options FALSE)
elseif("x${arg}" STREQUAL "xHCC_OPTIONS")
set(_hipcc_found_options FALSE)
set(_hcc_found_options TRUE)
set(_clang_found_options FALSE)
set(_nvcc_found_options FALSE)
elseif("x${arg}" STREQUAL "xCLANG_OPTIONS")
set(_hipcc_found_options FALSE)
set(_hcc_found_options FALSE)
set(_clang_found_options TRUE)
set(_nvcc_found_options FALSE)
elseif("x${arg}" STREQUAL "xNVCC_OPTIONS")
set(_hipcc_found_options FALSE)
set(_hcc_found_options FALSE)
set(_clang_found_options FALSE)
set(_nvcc_found_options TRUE)
elseif(
"x${arg}" STREQUAL "xEXCLUDE_FROM_ALL" OR
"x${arg}" STREQUAL "xSTATIC" OR
"x${arg}" STREQUAL "xSHARED" OR
"x${arg}" STREQUAL "xMODULE"
)
list(APPEND ${_cmake_options} ${arg})
else()
if(_hipcc_found_options)
list(APPEND ${_hipcc_options} ${arg})
elseif(_hcc_found_options)
list(APPEND ${_hcc_options} ${arg})
elseif(_clang_found_options)
list(APPEND ${_clang_options} ${arg})
elseif(_nvcc_found_options)
list(APPEND ${_nvcc_options} ${arg})
else()
# Assume this is a file
list(APPEND ${_sources} ${arg})
endif()
endif()
endforeach()
endmacro()
###############################################################################
# MACRO: Add include directories to pass to the hipcc command
###############################################################################
set(HIP_HIPCC_INCLUDE_ARGS_USER "")
macro(HIP_INCLUDE_DIRECTORIES)
foreach(dir ${ARGN})
list(APPEND HIP_HIPCC_INCLUDE_ARGS_USER $<$<BOOL:${dir}>:-I${dir}>)
endforeach()
endmacro()
###############################################################################
# FUNCTION: Helper to avoid clashes of files with the same basename but different paths
###############################################################################
function(HIP_COMPUTE_BUILD_PATH path build_path)
# Convert to cmake style paths
file(TO_CMAKE_PATH "${path}" bpath)
if(IS_ABSOLUTE "${bpath}")
string(FIND "${bpath}" "${CMAKE_CURRENT_BINARY_DIR}" _binary_dir_pos)
if(_binary_dir_pos EQUAL 0)
file(RELATIVE_PATH bpath "${CMAKE_CURRENT_BINARY_DIR}" "${bpath}")
else()
file(RELATIVE_PATH bpath "${CMAKE_CURRENT_SOURCE_DIR}" "${bpath}")
endif()
endif()
# Remove leading /
string(REGEX REPLACE "^[/]+" "" bpath "${bpath}")
# Avoid absolute paths by removing ':'
string(REPLACE ":" "_" bpath "${bpath}")
# Avoid relative paths that go up the tree
string(REPLACE "../" "__/" bpath "${bpath}")
# Avoid spaces
string(REPLACE " " "_" bpath "${bpath}")
# Strip off the filename
get_filename_component(bpath "${bpath}" PATH)
set(${build_path} "${bpath}" PARENT_SCOPE)
endfunction()
###############################################################################
# MACRO: Parse OPTIONS from ARGN & set variables prefixed by _option_prefix
###############################################################################
macro(HIP_PARSE_HIPCC_OPTIONS _option_prefix)
set(_hip_found_config)
foreach(arg ${ARGN})
# Determine if we are dealing with a per-configuration flag
foreach(config ${_hip_configuration_types})
string(TOUPPER ${config} config_upper)
if(arg STREQUAL "${config_upper}")
set(_hip_found_config _${arg})
# Clear arg to prevent it from being processed anymore
set(arg)
endif()
endforeach()
if(arg)
list(APPEND ${_option_prefix}${_hip_found_config} "${arg}")
endif()
endforeach()
endmacro()
###############################################################################
# MACRO: Try and include dependency file if it exists
###############################################################################
macro(HIP_INCLUDE_HIPCC_DEPENDENCIES dependency_file)
set(HIP_HIPCC_DEPEND)
set(HIP_HIPCC_DEPEND_REGENERATE FALSE)
# Create the dependency file if it doesn't exist
if(NOT EXISTS ${dependency_file})
file(WRITE ${dependency_file} "# Generated by: FindHIP.cmake. Do not edit.\n")
endif()
# Include the dependency file
include(${dependency_file})
# Verify the existence of all the included files
if(HIP_HIPCC_DEPEND)
foreach(f ${HIP_HIPCC_DEPEND})
if(NOT EXISTS ${f})
# If they aren't there, regenerate the file again
set(HIP_HIPCC_DEPEND_REGENERATE TRUE)
endif()
endforeach()
else()
# No dependencies, so regenerate the file
set(HIP_HIPCC_DEPEND_REGENERATE TRUE)
endif()
# Regenerate the dependency file if needed
if(HIP_HIPCC_DEPEND_REGENERATE)
set(HIP_HIPCC_DEPEND ${dependency_file})
file(WRITE ${dependency_file} "# Generated by: FindHIP.cmake. Do not edit.\n")
endif()
endmacro()
###############################################################################
# MACRO: Prepare cmake commands for the target
###############################################################################
macro(HIP_PREPARE_TARGET_COMMANDS _target _format _generated_files _source_files)
set(_hip_flags "")
string(TOUPPER "${CMAKE_BUILD_TYPE}" _hip_build_configuration)
if(HIP_HOST_COMPILATION_CPP)
set(HIP_C_OR_CXX CXX)
else()
set(HIP_C_OR_CXX C)
endif()
set(generated_extension ${CMAKE_${HIP_C_OR_CXX}_OUTPUT_EXTENSION})
# Initialize list of includes with those specified by the user. Append with
# ones specified to cmake directly.
set(HIP_HIPCC_INCLUDE_ARGS ${HIP_HIPCC_INCLUDE_ARGS_USER})
# Add the include directories
set(include_directories_generator "$<TARGET_PROPERTY:${_target},INCLUDE_DIRECTORIES>")
list(APPEND HIP_HIPCC_INCLUDE_ARGS "$<$<BOOL:${include_directories_generator}>:-I$<JOIN:${include_directories_generator}, -I>>")
get_directory_property(_hip_include_directories INCLUDE_DIRECTORIES)
list(REMOVE_DUPLICATES _hip_include_directories)
if(_hip_include_directories)
foreach(dir ${_hip_include_directories})
list(APPEND HIP_HIPCC_INCLUDE_ARGS $<$<BOOL:${dir}>:-I${dir}>)
endforeach()
endif()
HIP_GET_SOURCES_AND_OPTIONS(_hip_sources _hip_cmake_options _hipcc_options _hcc_options _clang_options _nvcc_options ${ARGN})
HIP_PARSE_HIPCC_OPTIONS(HIP_HIPCC_FLAGS ${_hipcc_options})
HIP_PARSE_HIPCC_OPTIONS(HIP_HCC_FLAGS ${_hcc_options})
HIP_PARSE_HIPCC_OPTIONS(HIP_CLANG_FLAGS ${_clang_options})
HIP_PARSE_HIPCC_OPTIONS(HIP_NVCC_FLAGS ${_nvcc_options})
# Add the compile definitions
set(compile_definition_generator "$<TARGET_PROPERTY:${_target},COMPILE_DEFINITIONS>")
list(APPEND HIP_HIPCC_FLAGS "$<$<BOOL:${compile_definition_generator}>:-D$<JOIN:${compile_definition_generator}, -D>>")
# Check if we are building shared library.
set(_hip_build_shared_libs FALSE)
list(FIND _hip_cmake_options SHARED _hip_found_SHARED)
list(FIND _hip_cmake_options MODULE _hip_found_MODULE)
if(_hip_found_SHARED GREATER -1 OR _hip_found_MODULE GREATER -1)
set(_hip_build_shared_libs TRUE)
endif()
list(FIND _hip_cmake_options STATIC _hip_found_STATIC)
if(_hip_found_STATIC GREATER -1)
set(_hip_build_shared_libs FALSE)
endif()
# If we are building a shared library, add extra flags to HIP_HIPCC_FLAGS
if(_hip_build_shared_libs)
list(APPEND HIP_HCC_FLAGS "-fPIC")
list(APPEND HIP_CLANG_FLAGS "-fPIC")
list(APPEND HIP_NVCC_FLAGS "--shared -Xcompiler '-fPIC'")
endif()
# Set host compiler
set(HIP_HOST_COMPILER "${CMAKE_${HIP_C_OR_CXX}_COMPILER}")
# Set compiler flags
set(_HIP_HOST_FLAGS "set(CMAKE_HOST_FLAGS ${CMAKE_${HIP_C_OR_CXX}_FLAGS})")
set(_HIP_HIPCC_FLAGS "set(HIP_HIPCC_FLAGS ${HIP_HIPCC_FLAGS})")
set(_HIP_HCC_FLAGS "set(HIP_HCC_FLAGS ${HIP_HCC_FLAGS})")
set(_HIP_CLANG_FLAGS "set(HIP_CLANG_FLAGS ${HIP_CLANG_FLAGS})")
set(_HIP_NVCC_FLAGS "set(HIP_NVCC_FLAGS ${HIP_NVCC_FLAGS})")
foreach(config ${_hip_configuration_types})
string(TOUPPER ${config} config_upper)
set(_HIP_HOST_FLAGS "${_HIP_HOST_FLAGS}\nset(CMAKE_HOST_FLAGS_${config_upper} ${CMAKE_${HIP_C_OR_CXX}_FLAGS_${config_upper}})")
set(_HIP_HIPCC_FLAGS "${_HIP_HIPCC_FLAGS}\nset(HIP_HIPCC_FLAGS_${config_upper} ${HIP_HIPCC_FLAGS_${config_upper}})")
set(_HIP_HCC_FLAGS "${_HIP_HCC_FLAGS}\nset(HIP_HCC_FLAGS_${config_upper} ${HIP_HCC_FLAGS_${config_upper}})")
set(_HIP_CLANG_FLAGS "${_HIP_CLANG_FLAGS}\nset(HIP_CLANG_FLAGS_${config_upper} ${HIP_CLANG_FLAGS_${config_upper}})")
set(_HIP_NVCC_FLAGS "${_HIP_NVCC_FLAGS}\nset(HIP_NVCC_FLAGS_${config_upper} ${HIP_NVCC_FLAGS_${config_upper}})")
endforeach()
# Reset the output variable
set(_hip_generated_files "")
set(_hip_source_files "")
# Iterate over all arguments and create custom commands for all source files
foreach(file ${ARGN})
# Ignore any file marked as a HEADER_FILE_ONLY
get_source_file_property(_is_header ${file} HEADER_FILE_ONLY)
# Allow per source file overrides of the format. Also allows compiling non .cu files.
get_source_file_property(_hip_source_format ${file} HIP_SOURCE_PROPERTY_FORMAT)
if((${file} MATCHES "\\.cu$" OR _hip_source_format) AND NOT _is_header)
set(host_flag FALSE)
else()
set(host_flag TRUE)
endif()
if(NOT host_flag)
# Determine output directory
HIP_COMPUTE_BUILD_PATH("${file}" hip_build_path)
set(hip_compile_output_dir "${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/${_target}.dir/${hip_build_path}")
get_filename_component(basename ${file} NAME)
set(generated_file_path "${hip_compile_output_dir}/${CMAKE_CFG_INTDIR}")
set(generated_file_basename "${_target}_generated_${basename}${generated_extension}")
# Set file names
set(generated_file "${generated_file_path}/${generated_file_basename}")
set(cmake_dependency_file "${hip_compile_output_dir}/${generated_file_basename}.depend")
set(custom_target_script_pregen "${hip_compile_output_dir}/${generated_file_basename}.cmake.pre-gen")
set(custom_target_script "${hip_compile_output_dir}/${generated_file_basename}.cmake")
# Set properties for object files
set_source_files_properties("${generated_file}"
PROPERTIES
EXTERNAL_OBJECT true # This is an object file not to be compiled, but only be linked
)
# Don't add CMAKE_CURRENT_SOURCE_DIR if the path is already an absolute path
get_filename_component(file_path "${file}" PATH)
if(IS_ABSOLUTE "${file_path}")
set(source_file "${file}")
else()
set(source_file "${CMAKE_CURRENT_SOURCE_DIR}/${file}")
endif()
# Bring in the dependencies
HIP_INCLUDE_HIPCC_DEPENDENCIES(${cmake_dependency_file})
# Configure the build script
configure_file("${HIP_run_hipcc}" "${custom_target_script_pregen}" @ONLY)
file(GENERATE
OUTPUT "${custom_target_script}"
INPUT "${custom_target_script_pregen}"
)
set(main_dep DEPENDS ${source_file})
if(CMAKE_GENERATOR MATCHES "Makefiles")
set(verbose_output "$(VERBOSE)")
elseif(HIP_VERBOSE_BUILD)
set(verbose_output ON)
else()
set(verbose_output OFF)
endif()
# Create up the comment string
file(RELATIVE_PATH generated_file_relative_path "${CMAKE_BINARY_DIR}" "${generated_file}")
set(hip_build_comment_string "Building HIPCC object ${generated_file_relative_path}")
# Build the generated file and dependency file
add_custom_command(
OUTPUT ${generated_file}
# These output files depend on the source_file and the contents of cmake_dependency_file
${main_dep}
DEPENDS ${HIP_HIPCC_DEPEND}
DEPENDS ${custom_target_script}
# Make sure the output directory exists before trying to write to it.
COMMAND ${CMAKE_COMMAND} -E make_directory "${generated_file_path}"
COMMAND ${CMAKE_COMMAND} ARGS
-D verbose:BOOL=${verbose_output}
-D build_configuration:STRING=${_hip_build_configuration}
-D "generated_file:STRING=${generated_file}"
-P "${custom_target_script}"
WORKING_DIRECTORY "${hip_compile_output_dir}"
COMMENT "${hip_build_comment_string}"
)
# Make sure the build system knows the file is generated
set_source_files_properties(${generated_file} PROPERTIES GENERATED TRUE)
list(APPEND _hip_generated_files ${generated_file})
list(APPEND _hip_source_files ${file})
endif()
endforeach()
# Set the return parameter
set(${_generated_files} ${_hip_generated_files})
set(${_source_files} ${_hip_source_files})
endmacro()
###############################################################################
# HIP_ADD_EXECUTABLE
###############################################################################
macro(HIP_ADD_EXECUTABLE hip_target)
# Separate the sources from the options
HIP_GET_SOURCES_AND_OPTIONS(_sources _cmake_options _hipcc_options _hcc_options _clang_options _nvcc_options ${ARGN})
HIP_PREPARE_TARGET_COMMANDS(${hip_target} OBJ _generated_files _source_files ${_sources} HIPCC_OPTIONS ${_hipcc_options} HCC_OPTIONS ${_hcc_options} CLANG_OPTIONS ${_clang_options} NVCC_OPTIONS ${_nvcc_options})
if(_source_files)
list(REMOVE_ITEM _sources ${_source_files})
endif()
if("${HIP_COMPILER}" STREQUAL "hcc")
if("x${HCC_HOME}" STREQUAL "x")
if (DEFINED ENV{ROCM_PATH})
set(HCC_HOME "$ENV{ROCM_PATH}/hcc")
elseif(DEFINED ENV{HIP_PATH})
set(HCC_HOME "$ENV{HIP_PATH}/../hcc")
else()
set(HCC_HOME "/opt/rocm/hcc")
endif()
endif()
set(CMAKE_HIP_LINK_EXECUTABLE "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HCC_HOME} <FLAGS> <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> -o <TARGET> <LINK_LIBRARIES>")
elseif("${HIP_COMPILER}" STREQUAL "clang")
if("x${HIP_CLANG_PATH}" STREQUAL "x")
if(DEFINED ENV{HIP_CLANG_PATH})
set(HIP_CLANG_PATH $ENV{HIP_CLANG_PATH})
elseif(DEFINED ENV{ROCM_PATH})
set(HIP_CLANG_PATH "$ENV{ROCM_PATH}/llvm/bin")
elseif(DEFINED ENV{HIP_PATH})
set(HIP_CLANG_PATH "$ENV{HIP_PATH}/../llvm/bin")
else()
set(HIP_CLANG_PATH "/opt/rocm/llvm/bin")
endif()
endif()
set(CMAKE_HIP_LINK_EXECUTABLE "${HIP_HIPCC_CMAKE_LINKER_HELPER} ${HIP_CLANG_PATH} ${HIP_CLANG_PARALLEL_BUILD_LINK_OPTIONS} <FLAGS> <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> -o <TARGET> <LINK_LIBRARIES>")
else()
set(CMAKE_HIP_LINK_EXECUTABLE "${HIP_HIPCC_CMAKE_LINKER_HELPER} <FLAGS> <CMAKE_CXX_LINK_FLAGS> <LINK_FLAGS> <OBJECTS> -o <TARGET> <LINK_LIBRARIES>")
endif()
if ("${_sources}" STREQUAL "")
add_executable(${hip_target} ${_cmake_options} ${_generated_files} "")
else()
add_executable(${hip_target} ${_cmake_options} ${_generated_files} ${_sources})
endif()
set_target_properties(${hip_target} PROPERTIES LINKER_LANGUAGE HIP)
# Link with host
if (HIP_HOST_INTERFACE)
# hip rt should be rocclr, compiler should be clang
target_link_libraries(${hip_target} ${HIP_HOST_INTERFACE})
endif()
endmacro()
###############################################################################
# HIP_ADD_LIBRARY
###############################################################################
macro(HIP_ADD_LIBRARY hip_target)
# Separate the sources from the options
HIP_GET_SOURCES_AND_OPTIONS(_sources _cmake_options _hipcc_options _hcc_options _clang_options _nvcc_options ${ARGN})
HIP_PREPARE_TARGET_COMMANDS(${hip_target} OBJ _generated_files _source_files ${_sources} ${_cmake_options} HIPCC_OPTIONS ${_hipcc_options} HCC_OPTIONS ${_hcc_options} CLANG_OPTIONS ${_clang_options} NVCC_OPTIONS ${_nvcc_options})
if(_source_files)
list(REMOVE_ITEM _sources ${_source_files})
endif()
if ("${_sources}" STREQUAL "")
add_library(${hip_target} ${_cmake_options} ${_generated_files} "")
else()
add_library(${hip_target} ${_cmake_options} ${_generated_files} ${_sources})
endif()
set_target_properties(${hip_target} PROPERTIES LINKER_LANGUAGE ${HIP_C_OR_CXX})
# Link with host
if (HIP_HOST_INTERFACE)
# hip rt should be rocclr, compiler should be clang
target_link_libraries(${hip_target} ${HIP_HOST_INTERFACE})
endif()
endmacro()
# vim: ts=4:sw=4:expandtab:smartindent
@@ -0,0 +1,182 @@
###############################################################################
# Runs commands using HIPCC
###############################################################################
###############################################################################
# This file runs the hipcc commands to produce the desired output file
# along with the dependency file needed by CMake to compute dependencies.
#
# Input variables:
#
# verbose:BOOL=<> OFF: Be as quiet as possible (default)
# ON : Describe each step
# build_configuration:STRING=<> Build configuration. Defaults to Debug.
# generated_file:STRING=<> File to generate. Mandatory argument.
if(NOT build_configuration)
set(build_configuration Debug)
endif()
if(NOT generated_file)
message(FATAL_ERROR "You must specify generated_file on the command line")
endif()
# Set these up as variables to make reading the generated file easier
set(HIP_HIPCC_EXECUTABLE "@HIP_HIPCC_EXECUTABLE@") # path
set(HIP_HIPCONFIG_EXECUTABLE "@HIP_HIPCONFIG_EXECUTABLE@") #path
set(HIP_HOST_COMPILER "@HIP_HOST_COMPILER@") # path
set(CMAKE_COMMAND "@CMAKE_COMMAND@") # path
set(HIP_run_make2cmake "@HIP_run_make2cmake@") # path
set(HCC_HOME "@HCC_HOME@") #path
set(HIP_CLANG_PATH "@HIP_CLANG_PATH@") #path
set(HIP_CLANG_PARALLEL_BUILD_COMPILE_OPTIONS "@HIP_CLANG_PARALLEL_BUILD_COMPILE_OPTIONS@")
@HIP_HOST_FLAGS@
@_HIP_HIPCC_FLAGS@
@_HIP_HCC_FLAGS@
@_HIP_CLANG_FLAGS@
@_HIP_NVCC_FLAGS@
#Needed to bring the HIP_HIPCC_INCLUDE_ARGS variable in scope
set(HIP_HIPCC_INCLUDE_ARGS @HIP_HIPCC_INCLUDE_ARGS@) # list
set(cmake_dependency_file "@cmake_dependency_file@") # path
set(source_file "@source_file@") # path
set(host_flag "@host_flag@") # bool
# Determine compiler and compiler flags
execute_process(COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --platform OUTPUT_VARIABLE HIP_PLATFORM OUTPUT_STRIP_TRAILING_WHITESPACE)
execute_process(COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --compiler OUTPUT_VARIABLE HIP_COMPILER OUTPUT_STRIP_TRAILING_WHITESPACE)
execute_process(COMMAND ${HIP_HIPCONFIG_EXECUTABLE} --runtime OUTPUT_VARIABLE HIP_RUNTIME OUTPUT_STRIP_TRAILING_WHITESPACE)
if(NOT host_flag)
set(__CC ${HIP_HIPCC_EXECUTABLE})
if("${HIP_PLATFORM}" STREQUAL "amd")
if("${HIP_COMPILER}" STREQUAL "hcc")
if(NOT "x${HCC_HOME}" STREQUAL "x")
set(ENV{HCC_HOME} ${HCC_HOME})
endif()
set(__CC_FLAGS ${HIP_HIPCC_FLAGS} ${HIP_HCC_FLAGS} ${HIP_HIPCC_FLAGS_${build_configuration}} ${HIP_HCC_FLAGS_${build_configuration}})
elseif("${HIP_COMPILER}" STREQUAL "clang")
if(NOT "x${HIP_CLANG_PATH}" STREQUAL "x")
set(ENV{HIP_CLANG_PATH} ${HIP_CLANG_PATH})
endif()
# Temporarily include HIP_HCC_FLAGS for HIP-Clang for PyTorch builds
set(__CC_FLAGS ${HIP_CLANG_PARALLEL_BUILD_COMPILE_OPTIONS} ${HIP_HIPCC_FLAGS} ${HIP_HCC_FLAGS} ${HIP_CLANG_FLAGS} ${HIP_HIPCC_FLAGS_${build_configuration}} ${HIP_HCC_FLAGS_${build_configuration}} ${HIP_CLANG_FLAGS_${build_configuration}})
endif()
else()
set(__CC_FLAGS ${HIP_HIPCC_FLAGS} ${HIP_NVCC_FLAGS} ${HIP_HIPCC_FLAGS_${build_configuration}} ${HIP_NVCC_FLAGS_${build_configuration}})
endif()
else()
set(__CC ${HIP_HOST_COMPILER})
set(__CC_FLAGS ${CMAKE_HOST_FLAGS} ${CMAKE_HOST_FLAGS_${build_configuration}})
endif()
set(__CC_INCLUDES ${HIP_HIPCC_INCLUDE_ARGS})
# hip_execute_process - Executes a command with optional command echo and status message.
# status - Status message to print if verbose is true
# command - COMMAND argument from the usual execute_process argument structure
# ARGN - Remaining arguments are the command with arguments
# HIP_result - Return value from running the command
macro(hip_execute_process status command)
set(_command ${command})
if(NOT "x${_command}" STREQUAL "xCOMMAND")
message(FATAL_ERROR "Malformed call to hip_execute_process. Missing COMMAND as second argument. (command = ${command})")
endif()
if(verbose)
execute_process(COMMAND "${CMAKE_COMMAND}" -E echo -- ${status})
# Build command string to print
set(hip_execute_process_string)
foreach(arg ${ARGN})
# Escape quotes if any
string(REPLACE "\"" "\\\"" arg ${arg})
# Surround args with spaces with quotes
if(arg MATCHES " ")
list(APPEND hip_execute_process_string "\"${arg}\"")
else()
list(APPEND hip_execute_process_string ${arg})
endif()
endforeach()
# Echo the command
execute_process(COMMAND ${CMAKE_COMMAND} -E echo ${hip_execute_process_string})
endif()
# Run the command
execute_process(COMMAND ${ARGN} RESULT_VARIABLE HIP_result)
endmacro()
# Delete the target file
hip_execute_process(
"Removing ${generated_file}"
COMMAND "${CMAKE_COMMAND}" -E remove "${generated_file}"
)
# Generate the dependency file
hip_execute_process(
"Generating dependency file: ${cmake_dependency_file}.pre"
COMMAND "${__CC}"
-M
"${source_file}"
-o "${cmake_dependency_file}.pre"
${__CC_FLAGS}
${__CC_INCLUDES}
)
if(HIP_result)
message(FATAL_ERROR "Error generating ${generated_file}")
endif()
# Generate the cmake readable dependency file to a temp file
hip_execute_process(
"Generating temporary cmake readable file: ${cmake_dependency_file}.tmp"
COMMAND "${CMAKE_COMMAND}"
-D "input_file:FILEPATH=${cmake_dependency_file}.pre"
-D "output_file:FILEPATH=${cmake_dependency_file}.tmp"
-D "verbose=${verbose}"
-P "${HIP_run_make2cmake}"
)
if(HIP_result)
message(FATAL_ERROR "Error generating ${generated_file}")
endif()
# Copy the file if it is different
hip_execute_process(
"Copy if different ${cmake_dependency_file}.tmp to ${cmake_dependency_file}"
COMMAND "${CMAKE_COMMAND}" -E copy_if_different "${cmake_dependency_file}.tmp" "${cmake_dependency_file}"
)
if(HIP_result)
message(FATAL_ERROR "Error generating ${generated_file}")
endif()
# Delete the temporary file
hip_execute_process(
"Removing ${cmake_dependency_file}.tmp and ${cmake_dependency_file}.pre"
COMMAND "${CMAKE_COMMAND}" -E remove "${cmake_dependency_file}.tmp" "${cmake_dependency_file}.pre"
)
if(HIP_result)
message(FATAL_ERROR "Error generating ${generated_file}")
endif()
# Generate the output file
hip_execute_process(
"Generating ${generated_file}"
COMMAND "${__CC}"
-c
"${source_file}"
-o "${generated_file}"
${__CC_FLAGS}
${__CC_INCLUDES}
)
if(HIP_result)
# Make sure that we delete the output file
hip_execute_process(
"Removing ${generated_file}"
COMMAND "${CMAKE_COMMAND}" -E remove "${generated_file}"
)
message(FATAL_ERROR "Error generating file ${generated_file}")
else()
if(verbose)
message("Generated ${generated_file} successfully.")
endif()
endif()
# vim: ts=4:sw=4:expandtab:smartindent
@@ -0,0 +1,50 @@
###############################################################################
# Computes dependencies using HIPCC
###############################################################################
###############################################################################
# This file converts dependency files generated using hipcc to a format that
# cmake can understand.
# Input variables:
#
# input_file:STRING=<> Dependency file to parse. Required argument
# output_file:STRING=<> Output file to generate. Required argument
if(NOT input_file OR NOT output_file)
message(FATAL_ERROR "You must specify input_file and output_file on the command line")
endif()
file(READ ${input_file} depend_text)
if (NOT "${depend_text}" STREQUAL "")
string(REPLACE " /" "\n/" depend_text ${depend_text})
string(REGEX REPLACE "^.*:" "" depend_text ${depend_text})
string(REGEX REPLACE "[ \\\\]*\n" ";" depend_text ${depend_text})
set(dependency_list "")
foreach(file ${depend_text})
string(REGEX REPLACE "^ +" "" file ${file})
if(NOT EXISTS "${file}")
message(WARNING " Removing non-existent dependency file: ${file}")
set(file "")
endif()
if(NOT IS_DIRECTORY "${file}")
get_filename_component(file_absolute "${file}" ABSOLUTE)
list(APPEND dependency_list "${file_absolute}")
endif()
endforeach()
endif()
# Remove the duplicate entries and sort them.
list(REMOVE_DUPLICATES dependency_list)
list(SORT dependency_list)
foreach(file ${dependency_list})
set(hip_hipcc_depend "${hip_hipcc_depend} \"${file}\"\n")
endforeach()
file(WRITE ${output_file} "# Generated by: FindHIP.cmake. Do not edit.\nSET(HIP_HIPCC_DEPEND\n ${hip_hipcc_depend})\n\n")
# vim: ts=4:sw=4:expandtab:smartindent
+2 -34
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,33 +14,10 @@
# - HYPRE_LIBRARIES
# - HYPRE_INCLUDE_DIRS
# - HYPRE_VERSION
# - HYPRE_USING_HIP (internal)
if (HYPRE_FOUND)
if (HYPRE_USING_HIP)
find_package(rocsparse REQUIRED)
find_package(rocrand REQUIRED)
endif()
return()
endif()
include(MfemCmakeUtilities)
mfem_find_package(HYPRE HYPRE HYPRE_DIR "include" "HYPRE.h" "lib" "HYPRE"
"Paths to headers required by HYPRE." "Libraries required by HYPRE."
CHECK_BUILD HYPRE_USING_HIP FALSE
"
#undef HYPRE_USING_HIP
#include <HYPRE_config.h>
#ifndef HYPRE_USING_HIP
#error HYPRE is built without HIP.
#endif
int main()
{
return 0;
}
")
"Paths to headers required by HYPRE." "Libraries required by HYPRE.")
if (HYPRE_FOUND AND (NOT HYPRE_VERSION))
try_run(HYPRE_VERSION_RUN_RESULT HYPRE_VERSION_COMPILE_RESULT
@@ -56,12 +33,3 @@ if (HYPRE_FOUND AND (NOT HYPRE_VERSION))
message(FATAL_ERROR "Unable to determine HYPRE version.")
endif()
endif()
if (HYPRE_FOUND AND HYPRE_USING_HIP)
find_package(rocsparse REQUIRED)
find_package(rocrand REQUIRED)
list(APPEND HYPRE_LIBRARIES ${rocsparse_LIBRARIES} ${rocrand_LIBRARIES})
set(HYPRE_LIBRARIES ${HYPRE_LIBRARIES} CACHE STRING
"HYPRE libraries + dependencies." FORCE)
message(STATUS "Updated HYPRE_LIBRARIES: ${HYPRE_LIBRARIES}")
endif()
-23
View File
@@ -1,23 +0,0 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Sets the following variables:
# - IPOPT_FOUND
# - IPOPT_INCLUDE_DIRS
# - IPOPT_LIBRARIES
include(MfemCmakeUtilities)
mfem_find_package(IPOPT IPOPT IPOPT_DIR
"include" "IpTNLP.hpp"
"lib" "ipopt"
"Paths to headers required by IPOPT."
"Libraries required by IPOPT.")
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -10,13 +10,11 @@
# CONTRIBUTING.md for details.
# Defines the following variables:
# - ALGOIM_FOUND
# - ALGOIM_LIBRARIES
# - ALGOIM_INCLUDE_DIRS
# - MESQUITE_FOUND
# - MESQUITE_LIBRARIES
# - MESQUITE_INCLUDE_DIRS
include(MfemCmakeUtilities)
mfem_find_package(Algoim ALGOIM ALGOIM_DIR
"include;src" "algoim_quad.hpp"
"" ""
"Paths to headers required by Algoim."
"Libraries required by Algoim.")
mfem_find_package(Mesquite MESQUITE MESQUITE_DIR
"include" "Mesquite_all_headers.hpp" "lib" "mesquite"
"Paths to headers required by Mesquite." "Libraries required by Mesquite.")
+3 -9
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -17,24 +17,18 @@
include(MfemCmakeUtilities)
# FindHDF5.cmake uses HDF5_ROOT, so we "translate" from the MFEM convention
# (MFEM's FindHDF5.cmake does not need HDF5_ROOT)
# set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
# We need to guard against the case where HDF5 was already found but without
# the HL extensions (in which case mfem_find_package will treat the package
# as already having been found), so we reset the variable to force FindHDF5.cmake
# to be called for a second time
set(HDF5_FOUND OFF)
enable_language(C) # FindHDF5.cmake uses the C compiler
mfem_find_package(NetCDF NETCDF NETCDF_DIR "include" netcdf.h "lib" netcdf
"Paths to headers required by NetCDF." "Libraries required by NetCDF.")
# The HL extension libraries are in a separate variable and must precede
# the "regular" hdf5 library, as hdf5_hl depends on hdf5
# The netcdf library will always be the first element of NETCDF_LIBRARIES
# and we need to insert after that library but before the hdf5 library, so
# position 1 is used
# (MFEM's FindHDF5.cmake does not set HDF5_C_LIBRARY_hdf5_hl and the HL library
# is already added to NETCDF_LIBRARIES)
# list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+12 -22
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,27 +14,17 @@
# - RAJA_LIBRARIES
# - RAJA_INCLUDE_DIRS
if (RAJA_FOUND)
return()
include(MfemCmakeUtilities)
mfem_find_package(RAJA RAJA RAJA_DIR "include" "RAJA/RAJA.hpp" "lib" "RAJA"
"Paths to headers required by RAJA." "Libraries required by RAJA.")
if (NOT RAJA_CONFIG_CMAKE)
set(RAJA_CONFIG_CMAKE "${RAJA_DIR}/share/raja/cmake/raja-config.cmake")
endif()
message(STATUS "Looking for RAJA ...")
if (RAJA_DIR)
message(STATUS " in RAJA_DIR = ${RAJA_DIR}")
find_package(RAJA CONFIG NO_DEFAULT_PATH PATHS "${RAJA_DIR}")
endif()
if (NOT RAJA_FOUND)
message(STATUS " in standard CMake locations")
find_package(RAJA CONFIG)
endif()
if (RAJA_FOUND)
set(RAJA_LIBRARIES "RAJA" CACHE STRING "RAJA imported target." FORCE)
set(RAJA_INCLUDE_DIRS "" CACHE STRING "RAJA include dirs (not used)" FORCE)
message(STATUS
"Found RAJA target: ${RAJA_LIBRARIES} (version: ${RAJA_VERSION})")
else()
set(msg STATUS)
if (RAJA_FIND_REQUIRED)
set(msg FATAL_ERROR)
if (EXISTS "${RAJA_CONFIG_CMAKE}")
include("${RAJA_CONFIG_CMAKE}")
if (ENABLE_CUDA AND NOT MFEM_USE_CUDA)
message(FATAL_ERROR
"RAJA is built with CUDA: MFEM_USE_CUDA=YES is required")
endif()
message(${msg} "RAJA not found. Please set RAJA_DIR to the RAJA prefix.")
endif()
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+4 -21
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -14,23 +14,6 @@
# - UMPIRE_LIBRARIES
# - UMPIRE_INCLUDE_DIRS
if (NOT umpire_DIR AND UMPIRE_DIR)
set(umpire_DIR ${UMPIRE_DIR}/lib/cmake/umpire)
endif()
message(STATUS "Looking for UMPIRE ...")
message(STATUS " in UMPIRE_DIR = ${UMPIRE_DIR}")
message(STATUS " umpire_DIR = ${umpire_DIR}")
find_package(umpire CONFIG)
set(UMPIRE_FOUND ${umpire_FOUND})
set(UMPIRE_LIBRARIES "umpire")
if (UMPIRE_FOUND)
message(STATUS
"Found UMPIRE target: ${UMPIRE_LIBRARIES} (version: ${umpire_VERSION})")
else()
set(msg STATUS)
if (UMPIRE_FIND_REQUIRED)
set(msg FATAL_ERROR)
endif()
message(${msg}
"UMPIRE not found. Please set UMPIRE_DIR to the install prefix.")
endif()
include(MfemCmakeUtilities)
mfem_find_package(UMPIRE UMPIRE UMPIRE_DIR "include" "umpire/Umpire.hpp" "lib" "umpire"
"Paths to headers required by UMPIRE." "Libraries required by UMPIRE.")
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+1 -1
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+58 -177
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@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -43,18 +43,23 @@ function(convert_filenames_to_full_paths NAMES)
set(${NAMES} ${tmp_names} PARENT_SCOPE)
endfunction()
# Wrapper for add_executable
# Wrapper for add_executable that calls the HIP wrapper if applicable
macro(mfem_add_executable NAME)
add_executable(${NAME} ${ARGN})
if (MFEM_USE_CUDA)
set_target_properties(${NAME} PROPERTIES
CUDA_RESOLVE_DEVICE_SYMBOLS ON)
if (MFEM_USE_HIP)
hip_add_executable(${NAME} ${ARGN})
set_target_properties(${NAME} PROPERTIES LINKER_LANGUAGE CXX)
else()
add_executable(${NAME} ${ARGN})
endif()
endmacro()
# Wrapper for add_library
# Wrapper for add_library that calls the HIP wrapper if applicable
macro(mfem_add_library NAME)
add_library(${NAME} ${ARGN})
if (MFEM_USE_HIP)
hip_add_library(${NAME} ${ARGN})
else()
add_library(${NAME} ${ARGN})
endif()
endmacro()
# Simple shortcut to add_custom_target() with option to add the target to the
@@ -87,6 +92,8 @@ macro(add_mfem_examples EXE_SRCS)
# If CUDA is enabled, tag source files to be compiled with nvcc.
if (MFEM_USE_CUDA)
set_source_files_properties(${SRC_FILE} PROPERTIES LANGUAGE CUDA)
elseif(MFEM_USE_HIP)
set_source_files_properties(${SRC_FILE} PROPERTIES HIP_SOURCE_PROPERTY_FORMAT TRUE)
endif()
get_filename_component(SRC_FILENAME ${SRC_FILE} NAME)
@@ -152,6 +159,8 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
endforeach()
set(EXTRA_OPTIONS_LIST ${LIST_})
endif()
elseif(MFEM_USE_HIP)
set_source_files_properties(${MAIN_LIST} ${EXTRA_SOURCES_LIST} PROPERTIES HIP_SOURCE_PROPERTY_FORMAT TRUE)
endif()
# Actually add the executable
@@ -162,12 +171,27 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
# Append the additional libraries and options
if (LIBRARIES_LIST)
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${LIBRARIES_LIST})
if(CMAKE_VERSION VERSION_GREATER 2.8.11)
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${LIBRARIES_LIST})
else()
target_link_libraries(${MFEM_EXE_NAME} ${LIBRARIES_LIST})
endif()
endif()
if (EXTRA_OPTIONS_LIST)
string(REPLACE ";" " " EXTRA_OPTIONS_STRING "${EXTRA_OPTIONS_LIST}")
message(STATUS "${MFEM_EXE_NAME}: add flags \"${EXTRA_OPTIONS_STRING}\"")
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${EXTRA_OPTIONS_LIST})
if(CMAKE_VERSION VERSION_GREATER 2.8.11)
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${EXTRA_OPTIONS_LIST})
else()
get_target_property(THIS_COMPILE_FLAGS ${MFEM_EXE_NAME} COMPILE_FLAGS)
if (THIS_COMPILE_FLAGS)
set(THIS_COMPILE_FLAGS "${THIS_COMPILE_FLAGS} ${EXTRA_OPTIONS_STRING}")
else()
set(THIS_COMPILE_FLAGS "${EXTRA_OPTIONS_STRING}")
endif()
set_target_properties(${MFEM_EXE_NAME}
PROPERTIES COMPILE_FLAGS ${THIS_COMPILE_FLAGS})
endif()
endif()
if (EXTRA_DEFINES_LIST)
target_compile_definitions(${MFEM_EXE_NAME} PRIVATE ${EXTRA_DEFINES_LIST})
@@ -176,15 +200,17 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
# Handle the MPI separately
if (MFEM_USE_MPI)
# Add MPI_CXX_LIBRARIES, in case this target does not link with mfem.
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_LIBRARIES})
if(CMAKE_VERSION VERSION_GREATER 2.8.11)
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_LIBRARIES})
else()
target_link_libraries(${MFEM_EXE_NAME} ${MPI_CXX_LIBRARIES})
endif()
if (MPI_CXX_INCLUDE_PATH)
target_include_directories(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_INCLUDE_PATH})
endif()
if (MPI_CXX_COMPILE_FLAGS)
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
"${MPI_CXX_COMPILE_FLAGS}")
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_FLAGS})
endif()
if (MPI_CXX_LINK_FLAGS)
@@ -508,15 +534,12 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
if (NOT ImportConfig)
set(ImportConfig RELEASE)
endif()
set(ImportConfigSuffix "_${ImportConfig}")
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
list(FIND ImpConfigs ${ImportConfig} _Index)
if ((_Index EQUAL -1) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
set(ImportConfig "NO_CONFIG")
set(ImportConfigSuffix "")
# message(FATAL_ERROR " *** ${ReqPack}: configuration "
# "${ImportConfig} not found. Set ${ReqPack}_IMPORT_CONFIG "
# "from the list: ${ImpConfigs}.")
if (_Index EQUAL -1)
message(FATAL_ERROR " *** ${ReqPack}: configuration "
"${ImportConfig} not found. Set ${ReqPack}_IMPORT_CONFIG "
"from the list: ${ImpConfigs}.")
endif()
endif()
# Set _Pack_LIBS
@@ -528,8 +551,8 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
endif()
else()
# Set _Pack_LIBS from the target properties for ImportConfig
foreach (_prop IMPORTED_LOCATION${ImportConfigSuffix}
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix})
foreach (_prop IMPORTED_LOCATION_${ImportConfig}
IMPORTED_LINK_INTERFACE_LIBRARIES_${ImportConfig})
get_target_property(_value ${TargetName} ${_prop})
if (_value)
list(APPEND _Pack_LIBS ${_value})
@@ -541,7 +564,7 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
endif()
endif()
# Set _Pack_INCS
foreach (_prop INCLUDE_DIRECTORIES INTERFACE_INCLUDE_DIRECTORIES)
foreach (_prop INCLUDE_DIRECTORIES)
get_target_property(_value ${TargetName} ${_prop})
if (_value)
list(APPEND _Pack_INCS ${_value})
@@ -719,133 +742,6 @@ function(mfem_find_library Name Prefix Lib LibDoc CheckVar CheckSrc)
endfunction(mfem_find_library)
#
# Extract compile and link options needed by the given target.
#
function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
if (NOT TARGET ${Target})
return()
endif()
# CMAKE_SHARED_LIBRARY_RUNTIME_C_FLAG -> '-Wl,-rpath,'
set(shared_link_flag ${CMAKE_SHARED_LIBRARY_RUNTIME_C_FLAG})
if (NOT shared_link_flag)
set(shared_link_flag "-Wl,-rpath,")
endif()
set(tgt "${Target}")
unset(CompileOpts)
unset(LinkOpts)
get_target_property(IsImported ${tgt} IMPORTED)
# message(STATUS "${tgt}[IMPORTED]: ${IsImported}")
# Generally, the possible target types are: STATIC_LIBRARY, MODULE_LIBRARY,
# SHARED_LIBRARY, INTERFACE_LIBRARY, EXECUTABLE.
get_target_property(type ${tgt} TYPE)
# message(STATUS "${tgt}[TYPE]: ${type}")
unset(ImportConfig)
get_target_property(ImportConfigs ${tgt} IMPORTED_CONFIGURATIONS)
if (ImportConfigs)
list(GET ImportConfigs 0 ImportConfig)
endif()
if (NOT ImportConfig)
set(ImportConfig RELEASE)
endif()
# message(STATUS "${tgt}[ImportConfig]: ${ImportConfig}")
# List all properties with: cmake --help-property-list
get_target_property(Defs ${tgt} INTERFACE_COMPILE_DEFINITIONS)
if (Defs)
list(REMOVE_DUPLICATES Defs)
foreach(Def ${Defs})
list(APPEND CompileOpts "-D${Def}")
endforeach()
endif()
get_target_property(Opts ${tgt} INTERFACE_COMPILE_OPTIONS)
if (Opts)
foreach(Opt ${Opts})
list(APPEND CompileOpts "${Opt}")
endforeach()
endif()
get_target_property(Dirs ${tgt} INTERFACE_INCLUDE_DIRECTORIES)
if (Dirs)
list(REMOVE_DUPLICATES Dirs)
foreach(Dir ${Dirs})
list(APPEND CompileOpts "-I\"${Dir}\"")
endforeach()
endif()
get_target_property(SysDirs ${tgt} INTERFACE_SYSTEM_INCLUDE_DIRECTORIES)
if (SysDirs)
list(REMOVE_DUPLICATES SysDirs)
foreach(SysDir ${SysDirs})
list(APPEND CompileOpts "-isystem \"${SysDir}\"")
endforeach()
endif()
if ("${type}" STREQUAL "STATIC_LIBRARY")
get_target_property(Location ${tgt} LOCATION)
if (Location)
list(APPEND LinkOpts "\"${Location}\"")
else()
message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
endif()
elseif ("${type}" STREQUAL "SHARED_LIBRARY")
get_target_property(Location ${tgt} LOCATION)
if (Location)
get_filename_component(Dir ${Location} DIRECTORY)
get_filename_component(NameWE ${Location} NAME_WE)
string(REGEX REPLACE "^lib" "" LibName ${NameWE})
list(APPEND LinkOpts
"-L\"${Dir}\""
"${shared_link_flag}\"${Dir}\""
"-l${LibName}")
else()
message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
endif()
elseif ("${type}" STREQUAL "INTERFACE_LIBRARY")
get_target_property(Libs ${tgt} INTERFACE_LINK_LIBRARIES)
if (Libs)
foreach(Lib ${Libs})
if (NOT (TARGET ${Lib}))
list(APPEND LinkOpts "${Lib}")
else()
mfem_get_target_options(${Lib} COpts LOpts)
list(APPEND CompileOpts ${COpts})
list(APPEND LinkOpts ${LOpts})
endif()
endforeach()
endif()
# Other properties we may need to handle:
# INTERFACE_LINK_DEPENDS
# INTERFACE_LINK_DIRECTORIES
# INTERFACE_LINK_OPTIONS
else()
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
" which is not supported!")
endif()
# Other potentially relevant properties:
# - For all target types:
# IMPORTED_LIBNAME
# IMPORTED_LIBNAME_${ImportConfig}
# INTERFACE_AUTOUIC_OPTIONS
# INTERFACE_COMPILE_FEATURES
# INTERFACE_POSITION_INDEPENDENT_CODE
# INTERFACE_SOURCES
# INTERFACE_SYSTEM_INCLUDE_DIRECTORIES)
# - For non-"INTERFACE_LIBRARY" target types only:
# IMPORTED_LOCATION
# IMPORTED_LOCATION_${ImportConfig}
# IMPORTED_LINK_INTERFACE_LIBRARIES
# IMPORTED_LINK_INTERFACE_LIBRARIES_${ImportConfig}
# LINK_FLAGS
# LINK_FLAGS_${ImportConfig}
# LOCATION_${ImportConfig})
set(${CompileOptsVar} "${CompileOpts}" PARENT_SCOPE)
set(${LinkOptsVar} "${LinkOpts}" PARENT_SCOPE)
endfunction(mfem_get_target_options)
#
# Function that creates 'config.mk' from 'config.mk.in' for the both the
# build- and the install-locations and define install rules for 'config.mk'
@@ -864,16 +760,13 @@ function(mfem_export_mk_files)
# Convert Boolean vars to YES/NO without writing the values to cache
set(CONFIG_MK_BOOL_VARS MFEM_USE_MPI MFEM_USE_METIS MFEM_USE_METIS_5
MFEM_DEBUG MFEM_USE_EXCEPTIONS MFEM_USE_ZLIB MFEM_USE_LIBUNWIND
MFEM_USE_LAPACK MFEM_THREAD_SAFE MFEM_USE_LEGACY_OPENMP MFEM_USE_OPENMP
MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_SUITESPARSE
MFEM_USE_SUPERLU MFEM_USE_SUPERLU5 MFEM_USE_MUMPS MFEM_USE_STRUMPACK
MFEM_USE_GINKGO MFEM_USE_AMGX MFEM_USE_GNUTLS MFEM_USE_NETCDF
MFEM_USE_PETSC MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE MFEM_USE_FMS
MFEM_USE_CONDUIT MFEM_USE_PUMI MFEM_USE_HIOP MFEM_USE_IPOPT MFEM_USE_GSLIB MFEM_USE_CUDA
MFEM_USE_HIP MFEM_USE_RAJA MFEM_USE_OCCA MFEM_USE_CEED MFEM_USE_CALIPER
MFEM_USE_UMPIRE MFEM_USE_SIMD MFEM_USE_ADIOS2 MFEM_USE_MKL_CPARDISO
MFEM_USE_ADFORWARD MFEM_USE_CODIPACK MFEM_USE_BENCHMARK MFEM_USE_PARELAG
MFEM_USE_MOONOLITH MFEM_USE_ALGOIM MFEM_USE_ENZYME)
MFEM_USE_LAPACK MFEM_THREAD_SAFE MFEM_USE_OPENMP MFEM_USE_LEGACY_OPENMP
MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_MESQUITE MFEM_USE_SUITESPARSE
MFEM_USE_SUPERLU MFEM_USE_STRUMPACK MFEM_USE_GINKGO MFEM_USE_AMGX
MFEM_USE_GNUTLS MFEM_USE_GSLIB MFEM_USE_NETCDF MFEM_USE_PETSC
MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE MFEM_USE_CONDUIT MFEM_USE_PUMI
MFEM_USE_CUDA MFEM_USE_OCCA MFEM_USE_RAJA MFEM_USE_UMPIRE MFEM_USE_SIMD
MFEM_USE_ADIOS2 MFEM_USE_BENCHMARK MFEM_USE_PARELAG)
foreach(var ${CONFIG_MK_BOOL_VARS})
if (${var})
set(${var} YES)
@@ -957,11 +850,9 @@ function(mfem_export_mk_files)
string(REGEX REPLACE "^SCOREC::" "" libname ${pumilib})
string(FIND "${pumilib}" ".a" staticlib)
string(FIND "${pumilib}" ".so" sharedlib)
string(FIND "${pumilib}" ".dylib" dynamiclib)
find_library(lib ${libname} PATHS ${PUMI_DIR}/lib NO_DEFAULT_PATH)
if (NOT "${sharedlib}" MATCHES "-1" OR
NOT "${staticlib}" MATCHES "-1" OR
NOT "${dynamiclib}" MATCHES "-1" )
NOT "${staticlib}" MATCHES "-1" )
set(MFEM_EXT_LIBS "${pumilib} ${MFEM_EXT_LIBS}")
elseif (NOT "${lib}" MATCHES "lib-NOTFOUND")
set(MFEM_EXT_LIBS "${lib} ${MFEM_EXT_LIBS}")
@@ -976,19 +867,9 @@ function(mfem_export_mk_files)
foreach(lib ${TPL_LIBRARIES})
get_filename_component(suffix ${lib} EXT)
# handle interfaces (e.g., SCOREC::apf)
if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*" OR "${lib}" MATCHES "ParMoonolith::.*")
elseif (TARGET "${lib}")
mfem_get_target_options(${lib} CompileOpts LinkOpts)
# Removing duplicates may lead to issues:
# list(REMOVE_DUPLICATES CompileOpts)
# list(REMOVE_DUPLICATES LinkOpts)
string(REPLACE ";" " " COpts "${CompileOpts}")
string(REPLACE ";" " " LOpts "${LinkOpts}")
# message(STATUS "${lib}[COpts]: '${COpts}'")
# message(STATUS "${lib}[LOpts]: '${LOpts}'")
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpts}")
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpts}")
# message(FATAL_ERROR "***** interface lib found ... exiting *****")
if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*")
elseif (NOT "${lib}" MATCHES "SCOREC::.*" AND "${lib}" MATCHES ".*::.*")
message(FATAL_ERROR "***** interface lib found ... exiting *****")
# handle static and shared libs
elseif ("${suffix}" STREQUAL "${CMAKE_SHARED_LIBRARY_SUFFIX}")
get_filename_component(dir ${lib} DIRECTORY)
+1 -3
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -31,11 +31,9 @@
// Windows specific options
#ifdef _WIN32
#ifndef _USE_MATH_DEFINES
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
#define _USE_MATH_DEFINES
#endif
#endif
// On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
// the following macro allows us to get M_PI and some needed functions, e.g.
// posix_memalign(), strdup(), strerror_r().
+4 -13
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
@@ -85,6 +85,9 @@
// Enable MFEM functionality based on the SUNDIALS libraries.
// #define MFEM_USE_SUNDIALS
// Enable MFEM functionality based on the Mesquite library.
// #define MFEM_USE_MESQUITE
// Enable MFEM functionality based on the SuiteSparse library.
// #define MFEM_USE_SUITESPARSE
@@ -135,15 +138,9 @@
// Enable MFEM functionality based on the PUMI library
// #define MFEM_USE_PUMI
// Enable Moonolith-based general interpolation between finite element spaces.
// #define MFEM_USE_MOONOLITH
// Enable MFEM functionality based on the HIOP library.
// #define MFEM_USE_HIOP
// Enable MFEM functionality based on the IPOPT library.
// #define MFEM_USE_IPOPT
// Enable MFEM functionality based on the GSLIB library
// #define MFEM_USE_GSLIB
@@ -167,9 +164,6 @@
// Enable functionality based on the Caliper library.
// #define MFEM_USE_CALIPER
// Enable functionality based on the Algoim library.
// #define MFEM_USE_ALGOIM
// Enable functionality based on the Umpire library.
// #define MFEM_USE_UMPIRE
@@ -195,7 +189,4 @@
// Enable functionality based on the Google Benchmark library.
// #define MFEM_USE_BENCHMARK
// Enable the Enzyme LLVM plugin
// #define MFEM_USE_ENZYME
#endif // MFEM_CONFIG_HEADER
+3 -5
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -29,6 +29,7 @@ MFEM_USE_OPENMP = @MFEM_USE_OPENMP@
MFEM_USE_MEMALLOC = @MFEM_USE_MEMALLOC@
MFEM_TIMER_TYPE = @MFEM_TIMER_TYPE@
MFEM_USE_SUNDIALS = @MFEM_USE_SUNDIALS@
MFEM_USE_MESQUITE = @MFEM_USE_MESQUITE@
MFEM_USE_SUITESPARSE = @MFEM_USE_SUITESPARSE@
MFEM_USE_SUPERLU = @MFEM_USE_SUPERLU@
MFEM_USE_SUPERLU5 = @MFEM_USE_SUPERLU5@
@@ -46,7 +47,6 @@ MFEM_USE_FMS = @MFEM_USE_FMS@
MFEM_USE_CONDUIT = @MFEM_USE_CONDUIT@
MFEM_USE_PUMI = @MFEM_USE_PUMI@
MFEM_USE_HIOP = @MFEM_USE_HIOP@
MFEM_USE_IPOPT = @MFEM_USE_IPOPT@
MFEM_USE_GSLIB = @MFEM_USE_GSLIB@
MFEM_USE_CUDA = @MFEM_USE_CUDA@
MFEM_USE_HIP = @MFEM_USE_HIP@
@@ -58,12 +58,10 @@ MFEM_USE_UMPIRE = @MFEM_USE_UMPIRE@
MFEM_USE_SIMD = @MFEM_USE_SIMD@
MFEM_USE_ADIOS2 = @MFEM_USE_ADIOS2@
MFEM_USE_MKL_CPARDISO = @MFEM_USE_MKL_CPARDISO@
MFEM_USE_MOONOLITH = @MFEM_USE_MOONOLITH@
MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
MFEM_USE_BENCHMARK = @MFEM_USE_BENCHMARK@
MFEM_USE_PARELAG = @MFEM_USE_PARELAG@
MFEM_USE_ENZYME = @MFEM_USE_ENZYME@
# Compiler, compile options, and link options
MFEM_CXX = @MFEM_CXX@
@@ -93,7 +91,7 @@ MFEM_MPIEXEC_NP = @MFEM_MPIEXEC_NP@
MFEM_MPI_NP = @MFEM_MPI_NP@
# The NVCC compiler cannot link with -x=cu
MFEM_LINK_FLAGS := $(filter-out -x=cu -xhip, $(MFEM_FLAGS))
MFEM_LINK_FLAGS := $(filter-out -x=cu, $(MFEM_FLAGS))
# Optional extra configuration
@MFEM_CONFIG_EXTRA@
+6 -18
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -30,6 +30,7 @@ option(MFEM_USE_OPENMP "Enable the OpenMP backend" OFF)
option(MFEM_USE_LEGACY_OPENMP "Enable legacy OpenMP usage" OFF)
option(MFEM_USE_MEMALLOC "Enable the internal MEMALLOC option." ON)
option(MFEM_USE_SUNDIALS "Enable SUNDIALS usage" OFF)
option(MFEM_USE_MESQUITE "Enable MESQUITE usage" OFF)
option(MFEM_USE_SUITESPARSE "Enable SuiteSparse usage" OFF)
option(MFEM_USE_SUPERLU "Enable SuperLU_DIST usage" OFF)
option(MFEM_USE_SUPERLU5 "Use the old SuperLU_DIST 5.1 version" OFF)
@@ -48,9 +49,7 @@ option(MFEM_USE_FMS "Enable FMS usage" OFF)
option(MFEM_USE_CONDUIT "Enable Conduit usage" OFF)
option(MFEM_USE_PUMI "Enable PUMI" OFF)
option(MFEM_USE_HIOP "Enable HiOp" OFF)
option(MFEM_USE_IPOPT "Enable Ipopt" OFF)
option(MFEM_USE_CUDA "Enable CUDA" OFF)
option(MFEM_USE_HIP "Enable HIP" OFF)
option(MFEM_USE_OCCA "Enable OCCA" OFF)
option(MFEM_USE_RAJA "Enable RAJA" OFF)
option(MFEM_USE_CEED "Enable CEED" OFF)
@@ -58,13 +57,11 @@ option(MFEM_USE_UMPIRE "Enable Umpire" OFF)
option(MFEM_USE_SIMD "Enable use of SIMD intrinsics" OFF)
option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
option(MFEM_USE_ALGOIM "Enable Algoim support" OFF)
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
option(MFEM_USE_PARELAG "Enable ParELAG" OFF)
option(MFEM_USE_ENZYME "Enable Enzyme" OFF)
# Optional overrides for autodetected MPIEXEC and MPIEXEC_NUMPROC_FLAG
# set(MFEM_MPIEXEC "mpirun" CACHE STRING "Command for running MPI tests")
@@ -110,7 +107,6 @@ if (MFEM_USE_CUDA)
set(HYPRE_REQUIRED_LIBRARIES "-lcusparse" "-lcurand" CACHE STRING
"Libraries that HYPRE depends on.")
endif()
# HIP dependency for HYPRE is handled in FindHYPRE.cmake.
set(METIS_DIR "${MFEM_DIR}/../metis-4.0" CACHE PATH "Path to the METIS library.")
@@ -124,6 +120,9 @@ set(SUNDIALS_DIR "${MFEM_DIR}/../sundials-5.0.0/instdir" CACHE PATH
# set(SUNDIALS_REQUIRED_PACKAGES "SuiteSparse/KLU/AMD/BTF/COLAMD/config"
# CACHE STRING "Additional packages required by SUNDIALS.")
set(MESQUITE_DIR "${MFEM_DIR}/../mesquite-2.99" CACHE PATH
"Path to the Mesquite library.")
set(SuiteSparse_DIR "${MFEM_DIR}/../SuiteSparse" CACHE PATH
"Path to the SuiteSparse library.")
set(SuiteSparse_REQUIRED_PACKAGES "BLAS" "METIS"
@@ -185,7 +184,6 @@ set(GNUTLS_DIR "" CACHE PATH "Path to the GnuTLS library.")
set(GSLIB_DIR "" CACHE PATH "Path to the GSLIB library.")
set(HDF5_DIR "/usr" CACHE PATH "Path to the HDF5 library.")
set(NETCDF_DIR "" CACHE PATH "Path to the NetCDF library.")
set(NetCDF_REQUIRED_PACKAGES "HDF5/C/HL" CACHE STRING
"Additional packages required by NetCDF.")
@@ -221,10 +219,6 @@ set(HIOP_DIR "${MFEM_DIR}/../hiop/install" CACHE STRING
"Directory where HiOp is installed")
set(HIOP_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
"Packages that HiOp depends on.")
set(IPOPT_DIR "${MFEM_DIR}/../ipopt/install" CACHE STRING
"Directory where IpOpt is installed")
set(IPOPT_REQUIRED_PACKAGES "BLAS" "LAPACK" CACHE STRING
"Packages that IpOpt depends on.")
set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
@@ -235,11 +229,6 @@ set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
set(UMPIRE_DIR "${MFEM_DIR}/../umpire" CACHE PATH "Path to Umpire")
set(CALIPER_DIR "${MFEM_DIR}/../caliper" CACHE PATH "Path to Caliper")
set(BLITZ_DIR "${MFEM_DIR}/../blitz" CACHE PATH "Path to Blitz")
set(ALGOIM_DIR "${MFEM_DIR}/../algoim" CACHE PATH "Path to Algoim")
set(Algoim_REQUIRED_PACKAGES "Blitz" CACHE STRING
"Packages that ALGOIM depends on.")
set(BENCHMARK_DIR "${MFEM_DIR}/../google-benchmark" CACHE PATH
"Path to Google Benchmark")
@@ -256,8 +245,7 @@ set(BLAS_LIBRARIES "" CACHE STRING "The BLAS library.")
set(LAPACK_INCLUDE_DIRS "" CACHE STRING "Path to LAPACK headers.")
set(LAPACK_LIBRARIES "" CACHE STRING "The LAPACK library.")
set(CODIPACK_INCLUDE_DIRS "${MFEM_DIR}/../CoDiPack/include" CACHE STRING
"Path to CoDiPack headers.")
set(CODIPACK_INCLUDE_DIRS "${MFEM_DIR}/../CoDiPack/inlude" CACHE STRING "Path to CoDiPack headers.")
set(CODIPACK_LIBRARIES "")
# Some useful variables:
+20 -102
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -42,9 +42,6 @@ STATIC = YES
SHARED = NO
# CUDA configuration options
#
# If you set MFEM_USE_ENZYME=YES, CUDA_CXX has to be configured to use cuda with
# clang as its host compiler.
CUDA_CXX = nvcc
CUDA_ARCH = sm_60
CUDA_FLAGS = -x=cu --expt-extended-lambda -arch=$(CUDA_ARCH)
@@ -131,6 +128,7 @@ MFEM_USE_LEGACY_OPENMP = NO
MFEM_USE_MEMALLOC = YES
MFEM_TIMER_TYPE = $(if $(NOTMAC),2,4)
MFEM_USE_SUNDIALS = NO
MFEM_USE_MESQUITE = NO
MFEM_USE_SUITESPARSE = NO
MFEM_USE_SUPERLU = NO
MFEM_USE_SUPERLU5 = NO
@@ -148,7 +146,6 @@ MFEM_USE_FMS = NO
MFEM_USE_CONDUIT = NO
MFEM_USE_PUMI = NO
MFEM_USE_HIOP = NO
MFEM_USE_IPOPT = NO
MFEM_USE_GSLIB = NO
MFEM_USE_CUDA = NO
MFEM_USE_HIP = NO
@@ -156,17 +153,14 @@ MFEM_USE_RAJA = NO
MFEM_USE_OCCA = NO
MFEM_USE_CEED = NO
MFEM_USE_CALIPER = NO
MFEM_USE_ALGOIM = NO
MFEM_USE_UMPIRE = NO
MFEM_USE_SIMD = NO
MFEM_USE_ADIOS2 = NO
MFEM_USE_MKL_CPARDISO = NO
MFEM_USE_MOONOLITH = NO
MFEM_USE_ADFORWARD = NO
MFEM_USE_CODIPACK = NO
MFEM_USE_BENCHMARK = NO
MFEM_USE_PARELAG = NO
MFEM_USE_ENZYME = NO
# MPI library compile and link flags
# These settings are used only when building MFEM with MPI + HIP
@@ -178,20 +172,6 @@ ifeq ($(MFEM_USE_MPI)$(MFEM_USE_HIP),YESYES)
MPI_LIB = -L$(MPI_DIR)/lib $(XLINKER)-rpath,$(MPI_DIR)/lib -lmpi
endif
# ROCM/HIP directory such that ROCM/HIP libraries like rocsparse and rocrand are
# found in $(HIP_DIR)/lib, usually as links. Typically, this directory is of
# the form /opt/rocm-X.Y.Z which is called ROCM_PATH by hipconfig.
ifeq ($(MFEM_USE_HIP),YES)
HIP_DIR := $(patsubst %/,%,$(dir $(shell which $(HIP_CXX))))
HIP_DIR := $(patsubst %/,%,$(dir $(HIP_DIR)))
ifeq (,$(wildcard $(HIP_DIR)/lib/librocsparse.*))
HIP_DIR := $(shell hipconfig --rocmpath 2> /dev/null)
ifeq (,$(wildcard $(HIP_DIR)/lib/librocsparse.*))
$(error Unable to determine HIP_DIR. Please set it manually.)
endif
endif
endif
# Compile and link options for zlib.
ZLIB_DIR =
ZLIB_OPT = $(if $(ZLIB_DIR),-I$(ZLIB_DIR)/include)
@@ -207,12 +187,7 @@ HYPRE_OPT = -I$(HYPRE_DIR)/include
HYPRE_LIB = -L$(HYPRE_DIR)/lib -lHYPRE
ifeq (YES,$(MFEM_USE_CUDA))
# This is only necessary when hypre is built with cuda:
HYPRE_LIB += -lcusparse -lcurand -lcublas
endif
ifeq (YES,$(MFEM_USE_HIP))
# This is only necessary when hypre is built with hip:
HYPRE_LIB += -L$(HIP_DIR)/lib $(XLINKER)-rpath,$(HIP_DIR)/lib\
-lrocsparse -lrocrand
HYPRE_LIB += -lcusparse -lcurand
endif
# METIS library configuration
@@ -251,16 +226,12 @@ POSIX_CLOCKS_LIB = -lrt
# SUNDIALS library configuration
# For sundials_nvecmpiplusx and nvecparallel remember to build with MPI_ENABLE=ON
# and modify cmake variables for hypre for sundials
SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
# SUNDIALS >= 6.4.0 requires C++14:
ifeq ($(MFEM_USE_SUNDIALS),YES)
BASE_FLAGS = -std=c++14
endif
SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
SUNDIALS_LIB = $(XLINKER)-rpath,$(SUNDIALS_DIR)/lib64\
$(XLINKER)-rpath,$(SUNDIALS_DIR)/lib\
-L$(SUNDIALS_DIR)/lib64 -L$(SUNDIALS_DIR)/lib\
SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
SUNDIALS_LIBDIR = $(wildcard $(SUNDIALS_DIR)/lib*)
SUNDIALS_LIB = $(XLINKER)-rpath,$(SUNDIALS_LIBDIR) -L$(SUNDIALS_LIBDIR)\
-lsundials_arkode -lsundials_cvodes -lsundials_nvecserial -lsundials_kinsol
ifeq ($(MFEM_USE_MPI),YES)
SUNDIALS_LIB += -lsundials_nvecparallel -lsundials_nvecmpiplusx
endif
@@ -270,6 +241,11 @@ endif
# If SUNDIALS was built with KLU:
# MFEM_USE_SUITESPARSE = YES
# MESQUITE library configuration
MESQUITE_DIR = @MFEM_DIR@/../mesquite-2.99
MESQUITE_OPT = -I$(MESQUITE_DIR)/include
MESQUITE_LIB = -L$(MESQUITE_DIR)/lib -lmesquite
# SuiteSparse library configuration
LIB_RT = $(if $(NOTMAC),-lrt,)
SUITESPARSE_DIR = @MFEM_DIR@/../SuiteSparse
@@ -308,7 +284,7 @@ SCALAPACK_LIB = -L$(SCALAPACK_DIR)/lib -lscalapack $(LAPACK_LIB)
MPI_FORTRAN_LIB = -lmpifort
# OpenMPI:
# MPI_FORTRAN_LIB = -lmpi_mpifh
# Additional Fortran library:
# Additional Fortan library:
# MPI_FORTRAN_LIB += -lgfortran
# MUMPS library configuration
@@ -319,9 +295,6 @@ MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
# STRUMPACK library configuration
STRUMPACK_DIR = @MFEM_DIR@/../STRUMPACK-build
ifeq ($(MFEM_USE_STRUMPACK),YES)
BASE_FLAGS = -std=c++14
endif
STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
# If STRUMPACK was build with OpenMP support, the following may be need:
# STRUMPACK_OPT += $(OPENMP_OPT)
@@ -395,11 +368,6 @@ ifeq ($(SLEPC_FOUND),YES)
$(subst $(CXX_XLINKER),$(XLINKER),$(SLEPC_DEP))
endif
ifeq ($(MFEM_USE_MOONOLITH),YES)
include $(MOONOLITH_DIR)/config/moonolith-config.makefile
MOONOLITH_LIB=$(MOONOLITH_LIBRARIES)
endif
# MPFR library configuration
MPFR_OPT =
MPFR_LIB = -lmpfr
@@ -448,11 +416,6 @@ HIOP_DIR = @MFEM_DIR@/../hiop/install
HIOP_OPT = -I$(HIOP_DIR)/include
HIOP_LIB = -L$(HIOP_DIR)/lib -lhiop $(LAPACK_LIB)
# IPOPT
IPOPT_DIR = @MFEM_DIR@/../ipopt/install
IPOPT_OPT = -I$(IPOPT_DIR)/include
IPOPT_LIB = -L$(IPOPT_DIR)/lib -lipopt $(LAPACK_LIB)
# CoDiPack
CODIPACK_DIR = @MFEM_DIR@/../CoDiPack
CODIPACK_OPT = -I$(CODIPACK_DIR)
@@ -465,11 +428,11 @@ GSLIB_LIB = -L$(GSLIB_DIR)/lib -lgs
# CUDA library configuration
CUDA_OPT =
CUDA_LIB = -lcusparse
CUDA_LIB = -lcusparse -lnvToolsExt
# HIP library configuration
# HIP library configuration (currently not needed)
HIP_OPT =
HIP_LIB = -L$(HIP_DIR)/lib $(XLINKER)-rpath,$(HIP_DIR)/lib -lhipsparse
HIP_LIB =
# OCCA library configuration
OCCA_DIR = @MFEM_DIR@/../occa
@@ -479,27 +442,7 @@ OCCA_LIB = $(XLINKER)-rpath,$(OCCA_DIR)/lib -L$(OCCA_DIR)/lib -locca
# CALIPER library configuration
CALIPER_DIR = @MFEM_DIR@/../caliper
CALIPER_OPT = -I$(CALIPER_DIR)/include
CALIPER_LIB = $(XLINKER)-rpath,$(CALIPER_DIR)/lib64 $(XLINKER)-rpath,$(CALIPER_DIR)/lib -L$(CALIPER_DIR)/lib64 -L$(CALIPER_DIR)/lib -lcaliper
ifdef ADIAK_DIR
CALIPER_OPT += -I$(ADIAK_DIR)/include
CALIPER_LIB += $(XLINKER)-rpath,$(ADIAK_DIR)/lib64 $(XLINKER)-rpath,$(ADIAK_DIR)/lib -L$(ADIAK_DIR)/lib64 -L$(ADIAK_DIR)/lib -ladiak
endif
ifdef GOTCHA_DIR
CALIPER_OPT += -I$(GOTCHA_DIR)/include
CALIPER_LIB += $(XLINKER)-rpath,$(GOTCHA_DIR)/lib64 $(XLINKER)-rpath,$(GOTCHA_DIR)/lib -L$(GOTCHA_DIR)/lib64 -L$(GOTCHA_DIR)/lib -lgotcha
endif
# BLITZ library configuration
BLITZ_DIR = @MFEM_DIR@/../blitz
BLITZ_OPT = -I$(BLITZ_DIR)/include
BLITZ_LIB = $(XLINKER)-rpath,$(BLITZ_DIR)/lib -L$(BLITZ_DIR)/lib -lblitz
# ALGOIM library configuration
ALGOIM_DIR = @MFEM_DIR@/../algoim
ALGOIM_OPT = -I$(ALGOIM_DIR)/src $(BLITZ_OPT)
ALGOIM_LIB = $(BLITZ_LIB)
CALIPER_LIB = $(XLINKER)-rpath,$(CALIPER_DIR)/lib64 -L$(CALIPER_DIR)/lib64 -lcaliper
# BENCHMARK library configuration
BENCHMARK_DIR = @MFEM_DIR@/../google-benchmark
@@ -512,29 +455,20 @@ CEED_OPT = -I$(CEED_DIR)/include
CEED_LIB = $(XLINKER)-rpath,$(CEED_DIR)/lib -L$(CEED_DIR)/lib -lceed
# RAJA library configuration
ifeq ($(MFEM_USE_RAJA),YES)
BASE_FLAGS = -std=c++14
endif
RAJA_DIR = @MFEM_DIR@/../raja
RAJA_OPT = -I$(RAJA_DIR)/include
ifdef CUB_DIR
RAJA_OPT += -I$(CUB_DIR)
endif
CAMP_LIB = -lcamp
ifdef CAMP_DIR
RAJA_OPT += -I$(CAMP_DIR)/include
CAMP_LIB = $(XLINKER)-rpath,$(CAMP_DIR)/lib -L$(CAMP_DIR)/lib -lcamp
endif
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA $(CAMP_LIB)
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA
# UMPIRE library configuration
ifeq ($(MFEM_USE_UMPIRE),YES)
BASE_FLAGS = -std=c++14
endif
UMPIRE_DIR = @MFEM_DIR@/../umpire
UMPIRE_OPT = -I$(UMPIRE_DIR)/include $(if $(CAMP_DIR), -I$(CAMP_DIR)/include)
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire $(CAMP_LIB)
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire
# MKL CPardiso library configuration
MKL_CPARDISO_DIR ?=
@@ -550,22 +484,6 @@ PARELAG_DIR = @MFEM_DIR@/../parelag
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
PARELAG_LIB = -L$(PARELAG_DIR)/build/src -lParELAG
# Enzyme configuration
# If you want to enable automatic differentiation at compile time, use the
# options below, adapted to your configuration. To be more flexible, we
# recommend using the Enzyme plugin during link time optimization. One option is
# to add your options to the global compiler/linker flags like
#
# BASE_FLAGS += -flto
# CXX_XLINKER += -fuse-ld=lld -Wl,--lto-legacy-pass-manager\
# -Wl,-mllvm=-load=$(ENZYME_DIR)/LLDEnzyme-$(ENZYME_VERSION).so -Wl,
#
ENZYME_DIR ?= @MFEM_DIR@/../enzyme
ENZYME_VERSION ?= 14
ENZYME_OPT = -fno-experimental-new-pass-manager -Xclang -load -Xclang $(ENZYME_DIR)/ClangEnzyme-$(ENZYME_VERSION).so
ENZYME_LIB = ""
# If YES, enable some informational messages
VERBOSE = NO
-27
View File
@@ -1,27 +0,0 @@
FROM ghcr.io/mfem/mfem-ubuntu-base:latest as builder
# docker build -t ghcr.io/mfem/mfem-ubuntu .
COPY ./config/docker/spack.yaml /opt/mfem-env/spack.yaml
RUN apt-get install -y python3 && \
cd /opt/mfem-env && \
. /opt/spack/share/spack/setup-env.sh && \
spack env activate . && \
spack env view regenerate
FROM ubuntu:22.04
COPY --from=builder /opt/view /opt/view
COPY --from=builder /opt/mfem-view /opt/mfem-view
RUN apt-get update && \
apt-get install -y unzip gfortran && \
apt-get install -y libcurl4-openssl-dev libssl-dev
ENV PATH=$PATH:/opt/mfem-view/bin
ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mfem-view/lib:/opt/mfem-view/lib64
ENV DEBIAN_FRONTEND=noninteractive
# The user will see the view on shell into the container
WORKDIR /opt/mfem-view
ENTRYPOINT ["/bin/bash"]
-47
View File
@@ -1,47 +0,0 @@
FROM ghcr.io/rse-ops/cuda-ubuntu-20.04:cuda-11.0.3
# docker build -f Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
RUN apt-get update && \
apt-get install -y unzip gfortran && \
spack compiler find && \
apt-get install -y libcurl4-openssl-dev libssl-dev
# /code is the working directory for code
WORKDIR /code
COPY . /code
# This is for a spack environment/view to install from there
RUN mkdir -p /opt/mfem-env \
&& (echo "spack:" \
&& echo " view:" \
&& echo " mfem:" \
&& echo " root: /opt/mfem-view" \
&& echo " link_type: copy" \
&& echo " packages:" \
&& echo " all:" \
&& echo " target:" \
&& echo " - x86_64_v3" \
&& echo " config:" \
&& echo " concretizer: clingo" \
&& echo " compiler:" \
&& echo " target:" \
&& echo " - x86_64_v3" \
&& echo " install_missing_compilers: true" \
&& echo " concretization: together") > /opt/mfem-env/spack.yaml
RUN cd /opt/mfem-env && \
. /opt/spack/share/spack/setup-env.sh && \
spack env activate . && \
spack develop --path /code mfem@master+examples+miniapps && \
spack add mfem@master+examples+miniapps # && \
# spack install
# ensure mfem always on various paths
#RUN cd /opt/mfem-env && \
# spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
# Present the software install when we shell in
# The view is at /opt/mfem-env/.spack-env/view
#WORKDIR /opt/software
#ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
-147
View File
@@ -1,147 +0,0 @@
# mfem Docker
We provide a [Dockerfile.base](Dockerfile.base) to build an ubuntu base image,
and a [Dockerfile](Dockerfile) to build a smaller one with a multi-stage build.
You can use this image for a demo of using mfem! 🎉️
Updated containers are built and deployed on merges to the main branch and releases.
If you want to request a build on demand, you can [manually run the workflow](https://docs.github.com/en/actions/managing-workflow-runs/manually-running-a-workflow) thanks to the workflow dispatch event.
### Usage
Here is how to build the container. Note that we build so it belongs to the same
namespace as the repository here. "ghcr.io" means "GitHub Container Registry" and
is the [GitHub packages](https://github.com/features/packages) registry that supports
Docker images and other OCI artifacts. From the root of the repository:
```bash
$ docker build -f config/docker/Dockerfile -t ghcr.io/mfem/mfem-ubuntu .
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
```
### Shell Ubuntu
To shell into the container:
```bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu
```
This smaller image has a view where everything is installed.
```bash
$ ls
bin etc include lib libexec sbin share var
```
- Examples are in share/mfem/examples
- Examples are in share/mfem/miniapps
You can read more about interaction with these examples and miniapps below.
### Shell Ubuntu Base
To shell into the container:
```bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
```
Off the bat, you can see mfem libraries are in your path so you can jump into development:
```bash
env | grep mfem
```
```bash
PKG_CONFIG_PATH=/opt/mfem-env/.spack-env/view/lib/pkgconfig:/opt/mfem-env/.spack-env/view/share/pkgconfig:/opt/mfem-env/.spack-env/view/lib64/pkgconfig
PWD=/opt/mfem-env
MANPATH=/opt/mfem-env/.spack-env/view/share/man:/opt/mfem-env/.spack-env/view/man:
CMAKE_PREFIX_PATH=/opt/mfem-env/.spack-env/view
SPACK_ENV=/opt/mfem-env
ACLOCAL_PATH=/opt/mfem-env/.spack-env/view/share/aclocal
LD_LIBRARY_PATH=/opt/mfem-env/.spack-env/view/lib:/opt/mfem-env/.spack-env/view/lib64
PATH=/opt/mfem-env/.spack-env/view/bin:/opt/view/bin:/opt/spack/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
```
#### Examples and MiniApps
If you want to develop a tool that _uses_ mfem, you can find the built libraries in:
```
$ ls /opt/mfem-env/.spack-env/view/
bin etc include lib libexec sbin share var
```
And yes, this is the working directory when you shell into the container!
You can find the examples here:
```bash
cd share/mfem/examples
```
```bash
$ ./ex0
Options used:
--mesh ../data/star.mesh
--order 1
Number of unknowns: 101
Iteration : 0 (B r, r) = 0.184259
Iteration : 1 (B r, r) = 0.102754
Iteration : 2 (B r, r) = 0.00558141
Iteration : 3 (B r, r) = 1.5247e-05
Iteration : 4 (B r, r) = 1.13807e-07
Iteration : 5 (B r, r) = 6.27231e-09
Iteration : 6 (B r, r) = 3.76268e-11
Iteration : 7 (B r, r) = 6.07423e-13
Iteration : 8 (B r, r) = 4.10615e-15
Average reduction factor = 0.140201
```
Try running a few, and look at the associated .cpp file for the source code!
You can also explore the "mini apps," also in share/mfem, but under miniapps.
```bash
# This is run from the examples directory
$ cd ../miniapps
```
```bash
$ ls
CMakeLists.txt common meshing nurbs shifted toys
adjoint electromagnetics mtop parelag solvers
autodiff gslib navier performance tools
```
And an example in "toys"
```bash
cd toys
```
```bash
$ ./automata -no-vis
Options used:
--num-steps 16
--rule 90
--no-visualization
Rule:
111 110 101 100 011 010 001 000
0 1 0 1 1 0 1 0
Applying rule...done.
```
Have fun!
#### Your own App
If you want to develop with your own code base
(and mfem as is in the container) you can bind to somewhere else in the container (e.g., src)
```bash
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/src bash
```
In the above, we can pretend your project is in the present working directory (PWD) and we are
binding to source. You can then use the mfem in the container for development, and if you
want to distribute your library or app in a container, you can use the mfem container as the base.
-11
View File
@@ -1,11 +0,0 @@
spack:
specs: [mfem@master+examples+miniapps]
view:
mfem:
root: /opt/mfem-view
link_type: copy
concretization: together
develop:
mfem:
path: /code
spec: mfem@master+examples+miniapps
+1 -1
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+1 -1
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+3 -3
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -35,8 +35,8 @@ cd $(git rev-parse --show-toplevel)
# copyright check
copyright=true
if [[ "${option}" == "--copyright" || "${option}" == "" ]]; then
if git grep -l "^\(#\|//\).*\(\-2021\|\ 2010,\)" > matches.txt; then
echo "Please update the following files to Copyright (c) 2010-2022:"
if git grep -l "^\(#\|//\).*\(\-2020\|\ 2010,\)" > matches.txt; then
echo "Please update the following files to Copyright (c) 2010-2021:"
cat matches.txt
copyright=false
fi
+1 -1
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
+12 -24
View File
@@ -1,6 +1,6 @@
#!/bin/bash
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -32,7 +32,7 @@ groups_serial=(
'"examples"
"Examples:"
"examples"
"ex{,1,2,3}[0-9].cpp"'
"ex{,1,2}[0-9].cpp"'
# "ex1.cpp"'
'"sundials"
"SUNDIALS examples:"
@@ -58,10 +58,6 @@ groups_serial=(
"HiOp examples:"
"examples/hiop"
"ex9.cpp"'
'"ipopt"
"IpOpt examples:"
"examples/ipopt"
"ex10.cpp"'
'"pumi"
"PUMI examples:"
"examples/pumi"
@@ -87,13 +83,11 @@ groups_serial=(
'"tools"
"Tools miniapps:"
"miniapps/tools"
"convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp
lor-transfer.cpp"'
"convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp lor-transfer.cpp"'
'"toys"
"Toys miniapps:"
"miniapps/toys"
"automata.cpp life.cpp lissajous.cpp mandel.cpp mondrian.cpp rubik.cpp
snake.cpp"'
"automata.cpp life.cpp lissajous.cpp mandel.cpp mondrian.cpp rubik.cpp snake.cpp"'
'"convergence"
"Convergence tests:"
"tests/convergence"
@@ -104,7 +98,7 @@ groups_parallel=(
'"examples"
"Examples:"
"examples"
"ex{,1,2,3}[0-9]p.cpp"'
"ex{,1,2}[0-9]p.cpp"'
# "ex1p.cpp"'
'"sundials"
"SUNDIALS examples:"
@@ -190,7 +184,7 @@ groups_all=(
'"examples"
"Examples:"
"examples"
"ex\"{,1,2,3}[0-9]\"{,p}.cpp"'
"ex\"{,1,2}[0-9]\"{,p}.cpp"'
'"sundials"
"SUNDIALS examples:"
"examples/sundials"
@@ -219,10 +213,6 @@ groups_all=(
"HiOp examples:"
"examples/hiop"
"ex9.cpp ex9p.cpp"'
'"ipopt"
"IpOpt examples:"
"examples/ipopt"
"ex10.cpp"'
'"pumi"
"PUMI examples:"
"examples/pumi"
@@ -248,8 +238,7 @@ groups_all=(
'"gslib"
"GSLIB miniapps:"
"miniapps/gslib"
"field-diff.cpp field-interp.cpp findpts.cpp schwarz_ex1.cpp pfindpts.cpp
schwarz_ex1p.cpp"'
"field-diff.cpp field-interp.cpp findpts.cpp schwarz_ex1.cpp pfindpts.cpp schwarz_ex1p.cpp"'
'"navier"
"Navier miniapps:"
"miniapps/navier"
@@ -269,13 +258,11 @@ groups_all=(
'"tools"
"Tools miniapps:"
"miniapps/tools"
"convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp
lor-transfer.cpp"'
"convert-dc.cpp display-basis.cpp get-values.cpp load-dc.cpp lor-transfer.cpp"'
'"toys"
"Toys miniapps:"
"miniapps/toys"
"automata.cpp life.cpp lissajous.cpp mandel.cpp mondrian.cpp rubik.cpp
snake.cpp"'
"automata.cpp life.cpp lissajous.cpp mandel.cpp mondrian.cpp rubik.cpp snake.cpp"'
'"convergence"
"Convergence tests:"
"tests/convergence"
@@ -562,14 +549,15 @@ function go()
local cmd_line="${1##+( )}"
cmd_line="${cmd_line%%+( )}"
shopt -u extglob
eval local cmd=(${cmd_line})
local res=""
echo $sep
echo "<${group}>" "${cmd_line}"
echo $sep
if [ "${timing}" == "yes" ]; then
timed_run eval "${cmd_line}"
timed_run "${cmd[@]}"
else
eval "${cmd_line}"
"${cmd[@]}"
fi
if [ "$?" -eq 0 ]; then
res="${green} OK ${none}"
+1 -1
View File
@@ -1,4 +1,4 @@
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
// Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
+4 -4
View File
@@ -1,4 +1,4 @@
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
# Copyright (c) 2010-2021, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
@@ -58,14 +58,14 @@ ifneq (,$(filter test%,$(MAKECMDGOALS)))
MAKEFLAGS += -k
endif
# Test runs of the examples/miniapps with parameters - check exit code:
# 0 means success, 242 means the test was skipped, anything else means error
# 0 means success, 255 means the test was skipped, anything else means error
mfem-test = \
printf " $(3) [$(2) $(1) ... ]: "; \
$(call $(TIMEFUN),$(TIMECMD),$(2) ./$(1) $(if $(5),,-no-vis )$(4) \
> $(1).stderr 2>&1); \
err="$$3"; \
if [ "$$3" = 0 ]; then $(PRINT_OK); \
else if [ "$$3" = 242 ]; then $(PRINT_SKIP); err=0; \
else if [ "$$3" = 255 ]; then $(PRINT_SKIP); err=0; \
else $(PRINT_FAILED); cat $(1).stderr; fi; fi; \
rm -f $(1).stderr; exit $$err
@@ -76,7 +76,7 @@ mfem-test-file = \
$(call $(TIMEFUN),$(TIMECMD),$(2) ./$(1) -no-vis > $(1).stderr 2>&1); \
err="$$3"; \
if [ "$$3" = 0 ] && [ -e $(4) ]; then $(PRINT_OK); \
else if [ "$$3" = 242 ] && [ -e $(4) ]; then $(PRINT_SKIP); err=0; \
else if [ "$$3" = 255 ] && [ -e $(4) ]; then $(PRINT_SKIP); err=0; \
else $(PRINT_FAILED); cat $(1).stderr; err=64; fi; fi; \
rm -f $(1).stderr; exit $$err
@@ -1,8 +0,0 @@
--- a/CMakeLists.txt Wed Dec 21 18:24:22 2016
+++ b/CMakeLists.txt Wed Dec 21 18:24:26 2016
@@ -20,4 +20,4 @@
# Recursively look for CMakeLists.txt in subdirs.
add_subdirectory("include")
add_subdirectory("libmetis")
-add_subdirectory("programs")
+# add_subdirectory("programs")
@@ -1,15 +0,0 @@
--- a/CMakeLists.txt Sat Mar 30 17:24:45 2013
+++ b/CMakeLists.txt Wed Dec 21 18:23:43 2016
@@ -4,11 +4,7 @@
set(GKLIB_PATH "GKlib" CACHE PATH "path to GKlib")
set(SHARED FALSE CACHE BOOL "build a shared library")
-if(MSVC)
- set(METIS_INSTALL FALSE)
-else()
- set(METIS_INSTALL TRUE)
-endif()
+set(METIS_INSTALL TRUE)
# Configure libmetis library.
if(SHARED)
@@ -1,34 +0,0 @@
diff --git a/include/metis.h b/include/metis.h
index dc5406a..7732437 100644
--- a/include/metis.h
+++ b/include/metis.h
@@ -72,10 +72,14 @@ typedef __int64 int64_t;
#define PRId64 "I64d"
#define SCNd32 "ld"
#define SCNd64 "I64d"
+#ifdef _WIN32
+#include <stdint.h>
+#else
#define INT32_MIN ((int32_t)_I32_MIN)
#define INT32_MAX _I32_MAX
#define INT64_MIN ((int64_t)_I64_MIN)
#define INT64_MAX _I64_MAX
+#endif
#else
#include <inttypes.h>
#endif
diff --git a/GKlib/gk_arch.h b/GKlib/gk_arch.h
index 78b1431..7258763 100644
--- a/GKlib/gk_arch.h
+++ b/GKlib/gk_arch.h
@@ -32,8 +32,8 @@
#ifdef __MSC__
- #include "ms_stdint.h"
- #include "ms_inttypes.h"
+ #include <stdint.h>
+ #include <inttypes.h>
#include "ms_stat.h"
#else
#ifndef SUNOS
@@ -1,11 +0,0 @@
--- a/GKlib/gk_arch.h Wed Dec 21 18:34:18 2016
+++ b/GKlib/gk_arch.h Wed Dec 21 18:30:49 2016
@@ -58,7 +58,7 @@
#define PTRDIFF_MAX INT64_MAX
#endif
-#ifdef __MSC__
+#if defined(__MSC__) && (_MSC_VER < 1900)
/* MSC does not have rint() function */
#define rint(x) ((int)((x)+0.5))
@@ -1,14 +0,0 @@
diff --git a/CMakeLists.txt b/CMakeLists.txt
index e94f050..b9613a7 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -1,7 +1,8 @@
cmake_minimum_required(VERSION 2.8)
project(METIS)
-set(GKLIB_PATH "GKlib" CACHE PATH "path to GKlib")
+set(GKLIB_PATH "${CMAKE_SOURCE_DIR}/GKlib" CACHE PATH "path to GKlib")
+
set(SHARED FALSE CACHE BOOL "build a shared library")
set(METIS_INSTALL TRUE)

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