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@@ -28,7 +28,7 @@ without GNU make or CMake can be found at the end of this file.
|
||||
In addition to the native build systems, MFEM packages are also available in the
|
||||
following package managers:
|
||||
|
||||
- Spack, https://github.com/LLNL/spack
|
||||
- Spack, https://github.com/spack/spack
|
||||
- OpenHPC, http://openhpc.community
|
||||
- Homebrew/Science, https://github.com/Homebrew/homebrew-science
|
||||
|
||||
|
||||
@@ -0,0 +1,31 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_ALL_HPP
|
||||
#define MFEM_BACKENDS_ALL_HPP
|
||||
|
||||
#include "../config/config.hpp"
|
||||
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "base/backend.hpp"
|
||||
|
||||
#ifdef MFEM_USE_OCCA
|
||||
#include "occa/backend.hpp"
|
||||
#endif
|
||||
|
||||
#ifdef MFEM_USE_PA
|
||||
#include "partialassembly/backend.hpp"
|
||||
#endif
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_ALL_HPP
|
||||
@@ -0,0 +1,211 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_ARRAY_HPP
|
||||
#define MFEM_BACKENDS_BASE_ARRAY_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "layout.hpp"
|
||||
#include "utils.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Extension to the template class Array<T>
|
||||
class PArray : public RefCounted
|
||||
{
|
||||
protected:
|
||||
/// Layout with shared ownership (smart pointer)
|
||||
DLayout layout;
|
||||
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/** @brief Create and return a new array (in @a *clone) of the same dynamic
|
||||
type as this array using the same layout and ItemSize().
|
||||
|
||||
Set @a *clone to NULL if allocation fails.
|
||||
|
||||
If @a copy_data is true, the contents of this array is copied to the new
|
||||
array; otherwise, the new array remains uninitialized.
|
||||
|
||||
If @a buffer is not NULL, return the array data of the newly created
|
||||
object (in @a *buffer) , if it is stored as a contiguous array on the
|
||||
host; otherwise, set @a *buffer to NULL. */
|
||||
virtual PArray *DoClone(bool copy_data, void **buffer,
|
||||
std::size_t item_size) const = 0;
|
||||
|
||||
/// Resize the array, reallocating its data if necessary.
|
||||
/** If @a buffer is not NULL, return the array data (in @a *buffer), if it
|
||||
is stored as a contiguous array on the host; otherwise, set @a *buffer to
|
||||
NULL. Returns 0 on success and non-zero otherwise, e.g. if memory
|
||||
allocation fails.
|
||||
|
||||
If the @a new_layout is not supported, a non-zero error code will be
|
||||
returned.
|
||||
|
||||
The @a new_layout has to be valid, i.e. new_layout != NULL and
|
||||
new_layout->HasEngine() == true.
|
||||
|
||||
@note If reallocation is performed, the previous content of the array is
|
||||
NOT copied to the new location. */
|
||||
virtual int DoResize(PLayout &new_layout, void **buffer,
|
||||
std::size_t item_size) = 0;
|
||||
|
||||
/** @brief Get access to the contents of the array in host memory, as a
|
||||
contiguous array. */
|
||||
/** If the array data is stored as a contiguous array in host memory, return
|
||||
a pointer to it. Otherwise, copy the data to @a buffer (if @a buffer is
|
||||
not NULL) and return @a buffer.
|
||||
@note If not NULL, @a buffer is assumed to be of size greater than or
|
||||
equal to Size(). */
|
||||
virtual void *DoPullData(void *buffer, std::size_t item_size) = 0;
|
||||
|
||||
/** @brief Set all entries of the array to the (single) value pointed to by
|
||||
@a value_ptr. */
|
||||
virtual void DoFill(const void *value_ptr, std::size_t item_size) = 0;
|
||||
|
||||
/** @brief Set all Size() entries of the array from the given contiguous
|
||||
array, @a src_buffer, on the host. */
|
||||
virtual void DoPushData(const void *src_buffer, std::size_t item_size) = 0;
|
||||
|
||||
/// Copy the data from @a src to @a *this.
|
||||
/** Both arrays must have the same dynamic type, layout, and item_size. */
|
||||
virtual void DoAssign(const PArray &src, std::size_t item_size) = 0;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
|
||||
public:
|
||||
/** @brief The @a layout parameter will be reference counted and therefore it
|
||||
should be dynamically allocated. */
|
||||
/** The @a layout must be valid in the sense that layout != NULL and
|
||||
layout->HasEngine() == true. */
|
||||
PArray(PLayout &p_layout)
|
||||
: layout(&p_layout)
|
||||
{
|
||||
MFEM_ASSERT(layout && layout->HasEngine(), "invalid layout");
|
||||
}
|
||||
|
||||
virtual ~PArray() { }
|
||||
|
||||
/// Get the current size of the array.
|
||||
std::size_t Size() const { return layout->Size(); }
|
||||
|
||||
/// Get the current layout of the array.
|
||||
PLayout &GetLayout() const { return *layout; }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
derived_t &As() { return dynamic_cast<derived_t&>(*this); }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { return dynamic_cast<const derived_t&>(*this); }
|
||||
|
||||
|
||||
// TODO: Error handling ... handle errors at the Engine level, at the class
|
||||
// level, or at the method level?
|
||||
|
||||
// TODO: Asynchronous execution interface ...
|
||||
|
||||
|
||||
/**
|
||||
@name Public virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/** @brief Create and return a new array (in @a *clone) of the same dynamic
|
||||
type as this array using the same layout and ItemSize().
|
||||
|
||||
Set @a *clone to NULL if allocation fails.
|
||||
|
||||
If @a copy_data is true, the contents of this array is copied to the new
|
||||
array; otherwise, the new array remains uninitialized.
|
||||
|
||||
If @a buffer is not NULL, return the array data of the newly created
|
||||
object (in @a *buffer) , if it is stored as a contiguous array on the
|
||||
host; otherwise, set @a *buffer to NULL. */
|
||||
template <typename T>
|
||||
DArray Clone(bool copy_data, T **buffer) const
|
||||
{ return DArray(DoClone(copy_data, (void**)buffer, sizeof(T))); }
|
||||
|
||||
/// Resize the array, reallocating its data if necessary.
|
||||
/** If @a buffer is not NULL, return the array data (in @a *buffer), if it
|
||||
is stored as a contiguous array on the host; otherwise, set @a *buffer to
|
||||
NULL. Returns 0 on success and non-zero otherwise, e.g. if memory
|
||||
allocation fails.
|
||||
|
||||
If the @a new_layout is not supported, a non-zero error code will be
|
||||
returned.
|
||||
|
||||
The @a new_layout has to be valid, i.e. new_layout != NULL and
|
||||
new_layout->HasEngine() == true.
|
||||
|
||||
@note If reallocation is performed, the previous content of the array is
|
||||
NOT copied to the new location. */
|
||||
template <typename T>
|
||||
int Resize(PLayout &new_layout, T **buffer)
|
||||
{ return DoResize(new_layout, (void**)buffer, sizeof(T)); }
|
||||
|
||||
/// Shortcut for Resize(*layout, buffer).
|
||||
/** This method is useful for updating the array after its layout is changed
|
||||
externally. */
|
||||
template <typename T>
|
||||
int Update(T **buffer)
|
||||
{ return DoResize(*layout, (void**)buffer, sizeof(T)); }
|
||||
|
||||
/// Shortcut for layout->Resize(new_size) followed by Update()
|
||||
template <typename T>
|
||||
int Resize(std::size_t new_size, T **buffer)
|
||||
{ layout->Resize(new_size); return Update(buffer); }
|
||||
|
||||
/** @brief Get access to the contents of the array in host memory, as a
|
||||
contiguous array. */
|
||||
/** If the array data is stored as a contiguous array in host memory, return
|
||||
a pointer to it. Otherwise, copy the data to @a buffer (if @a buffer is
|
||||
not NULL) and return @a buffer.
|
||||
@note If not NULL, @a buffer is assumed to be of size greater than or
|
||||
equal to Size(). */
|
||||
template <typename T>
|
||||
T *PullData(T *buffer)
|
||||
{ return Size() ? (T*)DoPullData((void*)buffer, sizeof(T)) : NULL; }
|
||||
|
||||
/** @brief Set all entries of the array to the (single) value pointed to by
|
||||
@a value_ptr. */
|
||||
template <typename T>
|
||||
void Fill(const T &value) { if (Size()) { DoFill(&value, sizeof(T)); } }
|
||||
|
||||
/** @brief Set all Size() entries of the array from the given contiguous
|
||||
array, @a src_buffer, on the host. */
|
||||
template <typename T>
|
||||
void PushData(const T *src_buffer)
|
||||
{ if (Size()) { DoPushData(src_buffer, sizeof(T)); } }
|
||||
|
||||
/// Copy the data from @a src to @a *this.
|
||||
/** Both arrays must have the same dynamic type, layout, and entry type. */
|
||||
template <typename T>
|
||||
void Assign(const PArray &src) { if (Size()) { DoAssign(src, sizeof(T)); } }
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_ARRAY_HPP
|
||||
@@ -0,0 +1,57 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_BACKEND_HPP
|
||||
#define MFEM_BACKENDS_BASE_BACKEND_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "memory_resource.hpp"
|
||||
#include "engine.hpp"
|
||||
#include "array.hpp"
|
||||
#include "vector.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
|
||||
#include <string>
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
#include <mpi.h>
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// TODO
|
||||
class Backend
|
||||
{
|
||||
public:
|
||||
/// TODO
|
||||
virtual ~Backend() { }
|
||||
|
||||
/// TODO
|
||||
virtual bool Supports(const std::string &engine_spec) const = 0;
|
||||
|
||||
/// TODO
|
||||
virtual Engine *Create(const std::string &engine_spec) = 0;
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
/// TODO
|
||||
virtual Engine *Create(MPI_Comm comm, const std::string &engine_spec) = 0;
|
||||
#endif
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_BACKEND_HPP
|
||||
@@ -0,0 +1,72 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_BILINEARFORM_HPP
|
||||
#define MFEM_BACKENDS_BASE_BILINEARFORM_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class Vector;
|
||||
class OperatorHandle;
|
||||
class BilinearForm;
|
||||
|
||||
/// TODO: doxygen
|
||||
class PBilinearForm : public RefCounted
|
||||
{
|
||||
protected:
|
||||
/// Engine with shared ownership
|
||||
SharedPtr<const Engine> engine;
|
||||
/// Not owned.
|
||||
BilinearForm *bform;
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
PBilinearForm(const Engine &e, BilinearForm &bf)
|
||||
: engine(&e), bform(&bf) { }
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~PBilinearForm() { }
|
||||
|
||||
/// Get the associated Engine
|
||||
const Engine &GetEngine() const { return *engine; }
|
||||
|
||||
/// Assemble the PBilinearForm.
|
||||
/** This method is called from the method BilinearForm::Assemble() of the
|
||||
associated BilinearForm #bform.
|
||||
@returns True, if the host assembly should be skipped. */
|
||||
virtual bool Assemble() = 0;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual void FormSystemMatrix(const Array<int> &ess_tdof_list,
|
||||
OperatorHandle &A) = 0;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual void FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
Vector &x, Vector &b,
|
||||
OperatorHandle &A, Vector &X, Vector &B,
|
||||
int copy_interior) = 0;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual void RecoverFEMSolution(const Vector &X, const Vector &b,
|
||||
Vector &x) = 0;
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_BILINEARFORM_HPP
|
||||
@@ -0,0 +1,29 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "engine.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
DFiniteElementSpace Engine::MakeFESpace(FiniteElementSpace &fes) const
|
||||
{
|
||||
return DFiniteElementSpace(new PFiniteElementSpace(*this, fes));
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
@@ -0,0 +1,209 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_ENGINE_HPP
|
||||
#define MFEM_BACKENDS_BASE_ENGINE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "../../general/scalars.hpp"
|
||||
#include "memory_resource.hpp"
|
||||
#include "smart_pointers.hpp"
|
||||
#include "utils.hpp"
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
#include <mpi.h>
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
// Forward declarations.
|
||||
class Backend;
|
||||
template <typename T> class Array;
|
||||
class Operator;
|
||||
class FiniteElementSpace;
|
||||
class LinearForm;
|
||||
class BilinearForm;
|
||||
class MixedBilinearForm;
|
||||
class NonlinearForm;
|
||||
|
||||
|
||||
/// In parallel, each MPI rank will usually create a single engine.
|
||||
class Engine : public RefCounted
|
||||
{
|
||||
protected:
|
||||
Backend *backend; ///< Backend that created the engine. Not owned.
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
MPI_Comm comm; ///< Associated MPI communicator (may be MPI_COMM_NULL).
|
||||
#endif
|
||||
|
||||
/// Number of memory resources used by the Engine.
|
||||
int num_mem_res;
|
||||
/// Number of workers used by the Engine.
|
||||
int num_workers;
|
||||
|
||||
/// Memory resources used by the engine - array of pointers.
|
||||
/** Both the array and the entries are owned. */
|
||||
MemoryResource **memory_resources;
|
||||
|
||||
/// Relative computational speed of the workers. Owned.
|
||||
double *workers_weights;
|
||||
|
||||
/// For each worker, which memory resource it uses.
|
||||
int *workers_mem_res;
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
Engine(Backend *b, int n_mem, int n_workers)
|
||||
: backend(b),
|
||||
#ifdef MFEM_USE_MPI
|
||||
comm(MPI_COMM_NULL),
|
||||
#endif
|
||||
num_mem_res(n_mem),
|
||||
num_workers(n_workers),
|
||||
memory_resources(new MemoryResource*[num_mem_res]()),
|
||||
workers_weights(new double[num_workers]()),
|
||||
workers_mem_res(new int[num_workers]())
|
||||
{ /* Note: all arrays are value-initialized with zeros. */ }
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual ~Engine()
|
||||
{
|
||||
delete [] workers_mem_res;
|
||||
delete [] workers_weights;
|
||||
for (int i = 0; i < num_mem_res; i++)
|
||||
{
|
||||
delete memory_resources[i];
|
||||
}
|
||||
delete [] memory_resources;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
@name Machine resources interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
/// Get the associated MPI_Comm
|
||||
MPI_Comm GetComm() const { return comm; }
|
||||
#endif
|
||||
|
||||
/// TODO
|
||||
int GetNumMemRes() const { return num_mem_res; }
|
||||
|
||||
/// TODO
|
||||
MemoryResource &GetMemRes(int idx) const { return *memory_resources[idx]; }
|
||||
|
||||
/// TODO
|
||||
int GetNumWorkers() const { return num_workers; }
|
||||
|
||||
/// TODO
|
||||
const double *GetWorkersWeights() const { return workers_weights; }
|
||||
|
||||
/// TODO
|
||||
const int *GetWorkersMemRes() const { return workers_mem_res; }
|
||||
|
||||
///@}
|
||||
// End: Machine resources interface
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
derived_t &As() { *util::As<derived_t>(this); }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { *util::As<const derived_t>(this); }
|
||||
|
||||
|
||||
// TODO: Error handling ... handle errors at the Engine level, at the class
|
||||
// level, or at the method level?
|
||||
|
||||
|
||||
/**
|
||||
@name Virtual interface: finite element data structures and algorithms
|
||||
*/
|
||||
///@{
|
||||
|
||||
// TODO: Asynchronous execution in this class ...
|
||||
|
||||
/// Allocate and return a new layout for the given @a size.
|
||||
/** The layout decomposition is determined automatically by the Engine using
|
||||
a deterministic algorithm: calls to this method with the same @a size
|
||||
will produce the same result, as long as the Engine remains unmodified
|
||||
between the calls.
|
||||
|
||||
The returned object is allocated with operator new and must be
|
||||
deallocated by the caller.
|
||||
|
||||
TODO: Returns NULL if memory allocation fails?
|
||||
*/
|
||||
virtual DLayout MakeLayout(std::size_t size) const = 0;
|
||||
|
||||
/// Allocate and return a new layout for the given worker decomposition.
|
||||
/** The returned object is allocated with operator new and must be
|
||||
deallocated by the caller.
|
||||
|
||||
TODO: Returns NULL if memory allocation fails?
|
||||
|
||||
The @a offsets should satisfy: offsets.Size() == number of workers + 1,
|
||||
offsets[0] == 0, and offsets[i] <= offsets[i+1], for i: 0 <= i < number
|
||||
of workers. */
|
||||
virtual DLayout MakeLayout(const Array<std::size_t> &offsets) const = 0;
|
||||
|
||||
// Note: There may be other ways to construct layouts in the future, e.g.
|
||||
// block-vector layouts, or multi-vector layouts.
|
||||
|
||||
/// TODO
|
||||
virtual DArray MakeArray(PLayout &layout, std::size_t item_size) const = 0;
|
||||
|
||||
/// Allocate and return a new vector using the given @a layout.
|
||||
/** The returned object is a smart pointer that will automatically deallocate
|
||||
the vector.
|
||||
|
||||
TODO: Produce an error if memory allocation fails?
|
||||
|
||||
Only layouts returned by this Engine are guaranteed to be supported.
|
||||
Using a type that is not supported will produce an error. */
|
||||
virtual DVector MakeVector(PLayout &layout,
|
||||
int type_id = ScalarId<double>::value) const = 0;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual DFiniteElementSpace MakeFESpace(FiniteElementSpace &fes) const;
|
||||
|
||||
/// TODO: doxygen
|
||||
virtual DBilinearForm MakeBilinearForm(BilinearForm &bf) const = 0;
|
||||
|
||||
|
||||
// Question: How do we construct coefficients?
|
||||
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual void AssembleLinearForm(LinearForm &l_form) const = 0;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual Operator *MakeOperator(const MixedBilinearForm &mbl_form) const = 0;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual Operator *MakeOperator(const NonlinearForm &nl_form) const = 0;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_ENGINE_HPP
|
||||
@@ -0,0 +1,61 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_FE_SPACE_HPP
|
||||
#define MFEM_BACKENDS_BASE_FE_SPACE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "engine.hpp"
|
||||
#include "utils.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class FiniteElementSpace;
|
||||
|
||||
/// TODO: doxygen
|
||||
class PFiniteElementSpace : public RefCounted
|
||||
{
|
||||
protected:
|
||||
/// Engine with shared ownership
|
||||
SharedPtr<const Engine> engine;
|
||||
/// Not owned.
|
||||
FiniteElementSpace *fes;
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
PFiniteElementSpace(const Engine &e, FiniteElementSpace &fespace)
|
||||
: engine(&e), fes(&fespace) { }
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~PFiniteElementSpace() { }
|
||||
|
||||
/// Get the associated engine
|
||||
const Engine &GetEngine() const { return *engine; }
|
||||
|
||||
mfem::FiniteElementSpace* GetFESpace() const { return fes; }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
derived_t &As() { return *util::As<derived_t>(this); }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { return *util::As<const derived_t>(this); }
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_FE_SPACE_HPP
|
||||
@@ -0,0 +1,104 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_LAYOUT_HPP
|
||||
#define MFEM_BACKENDS_BASE_LAYOUT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "smart_pointers.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Polymorphic layout (array/vector layout descriptor)
|
||||
class PLayout : public RefCounted
|
||||
{
|
||||
protected:
|
||||
/// Engine with shared ownership
|
||||
SharedPtr<const Engine> engine;
|
||||
std::size_t size;
|
||||
|
||||
template <typename DObject>
|
||||
struct Maker
|
||||
{
|
||||
template <typename entry_t>
|
||||
static DObject MakeNew(PLayout &layout);
|
||||
};
|
||||
|
||||
public:
|
||||
explicit PLayout(std::size_t s = 0) : engine(NULL), size(s) { }
|
||||
|
||||
explicit PLayout(const Engine &e, std::size_t s = 0)
|
||||
: engine(&e), size(s) { }
|
||||
|
||||
virtual ~PLayout() { }
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/// Resize the layout
|
||||
virtual void Resize(std::size_t new_size) { size = new_size; }
|
||||
|
||||
/// Resize the layout based on the given worker offsets
|
||||
virtual void Resize(const Array<std::size_t> &offsets)
|
||||
{ MFEM_ABORT("method not supported"); }
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
|
||||
/// Layouts without engine cannot create DArray, DVector, etc.
|
||||
bool HasEngine() const { return engine != NULL; }
|
||||
|
||||
/// TODO: doxygen
|
||||
const Engine &GetEngine() const { return *engine; }
|
||||
|
||||
/// TODO: doxygen
|
||||
std::size_t Size() const { return size; }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
derived_t &As() { return *util::As<derived_t>(this); }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { return *util::As<const derived_t>(this); }
|
||||
|
||||
/// TODO: doxygen
|
||||
template <typename DObject, typename entry_t>
|
||||
DObject Make()
|
||||
{
|
||||
MFEM_ASSERT(HasEngine(), "this method requires an Engine");
|
||||
return Maker<DObject>::template MakeNew<entry_t>(*this);
|
||||
}
|
||||
};
|
||||
|
||||
template <> struct PLayout::Maker<DArray>
|
||||
{
|
||||
template <typename entry_t> static DArray MakeNew(PLayout &layout)
|
||||
{ return layout.GetEngine().MakeArray(layout, sizeof(entry_t)); }
|
||||
};
|
||||
|
||||
template <> struct PLayout::Maker<DVector>
|
||||
{
|
||||
template <typename entry_t> static DVector MakeNew(PLayout &layout)
|
||||
{ return layout.GetEngine().MakeVector(layout, ScalarId<entry_t>::value); }
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_LAYOUT_HPP
|
||||
@@ -0,0 +1,59 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "memory_resource.hpp"
|
||||
#include "../../general/error.hpp"
|
||||
|
||||
#include <cstdlib>
|
||||
#include <cstring>
|
||||
#include <cerrno>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
void *NewDeleteMemoryResource::DoAllocate(std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
void *p = ::operator new[](bytes);
|
||||
MFEM_VERIFY(!alignment || (std::size_t)(p) % alignment == 0,
|
||||
"invalid alignment");
|
||||
return p;
|
||||
}
|
||||
|
||||
void NewDeleteMemoryResource::DoDeallocate(void *p, std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
::operator delete[](p);
|
||||
}
|
||||
|
||||
|
||||
void *AlignedMemoryResource::DoAllocate(std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
void *p;
|
||||
if (!alignment) { alignment = sizeof(long double); }
|
||||
MFEM_VERIFY(posix_memalign(&p, alignment, bytes) == 0,
|
||||
"error in posix_memalign(): " << strerror(errno));
|
||||
return p;
|
||||
}
|
||||
|
||||
void AlignedMemoryResource::DoDeallocate(void *p, std::size_t bytes,
|
||||
std::size_t alignment)
|
||||
{
|
||||
free(p);
|
||||
}
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
@@ -0,0 +1,70 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_MEMORY_RESOURCE_HPP
|
||||
#define MFEM_BACKENDS_BASE_MEMORY_RESOURCE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include <cstddef>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Polymorphic memory resource. Similar to C++17's std::pmr::memory_resource.
|
||||
class MemoryResource
|
||||
{
|
||||
protected:
|
||||
virtual void *DoAllocate(std::size_t bytes, std::size_t alignment) = 0;
|
||||
virtual void DoDeallocate(void* p, std::size_t bytes,
|
||||
std::size_t alignment) = 0;
|
||||
|
||||
public:
|
||||
// Implicitly defined default & copy constructors
|
||||
|
||||
/// Virtual destructor.
|
||||
virtual ~MemoryResource() { }
|
||||
|
||||
/// If alignment == 0, use default alignment.
|
||||
void *Allocate(std::size_t bytes, std::size_t alignment = 0)
|
||||
{ return DoAllocate(bytes, alignment); }
|
||||
|
||||
/// If alignment == 0, use default alignment.
|
||||
void Deallocate(void *p, std::size_t bytes, std::size_t alignment = 0)
|
||||
{ DoDeallocate(p, bytes, alignment); }
|
||||
};
|
||||
|
||||
|
||||
/** @brief Dynamic host memory resource using operator new[](std::size_t) for
|
||||
allocation and operator delete[](void*) for deallocation. */
|
||||
class NewDeleteMemoryResource : public MemoryResource
|
||||
{
|
||||
protected:
|
||||
virtual void *DoAllocate(std::size_t bytes, std::size_t alignment);
|
||||
virtual void DoDeallocate(void *p, std::size_t bytes, std::size_t alignment);
|
||||
};
|
||||
|
||||
|
||||
/** @brief Dynamic host memory resource using posix_memalign() for aligned
|
||||
allocation and free() for deallocation. */
|
||||
class AlignedMemoryResource : public MemoryResource
|
||||
{
|
||||
protected:
|
||||
virtual void *DoAllocate(std::size_t bytes, std::size_t alignment);
|
||||
virtual void DoDeallocate(void *p, std::size_t bytes, std::size_t alignment);
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_MEMORY_RESOURCE_HPP
|
||||
@@ -0,0 +1,233 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_SMART_POINTERS_HPP
|
||||
#define MFEM_BACKENDS_BASE_SMART_POINTERS_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "utils.hpp"
|
||||
#include "../../general/error.hpp"
|
||||
#include <cstddef>
|
||||
|
||||
// #define MFEM_TRACE_SHARED_PTR
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
#include "../../general/globals.hpp"
|
||||
#endif
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Base class for classes with simple reference counting.
|
||||
/** Reference counting is performed by the class SharedPtr. */
|
||||
class RefCounted
|
||||
{
|
||||
private:
|
||||
mutable unsigned ref_count;
|
||||
|
||||
/// Only class SharedPtr can access ref_count.
|
||||
template <typename T> friend class SharedPtr;
|
||||
|
||||
public:
|
||||
RefCounted() : ref_count(0) { }
|
||||
|
||||
/** @brief Prevent SharedPtr objects from deleting this object by
|
||||
incrementing the reference counter by one. */
|
||||
void DontDelete() const { ++ref_count; }
|
||||
};
|
||||
|
||||
|
||||
/** @brief Smart pointer class that manages objects of type T derived from class
|
||||
RefCounted. */
|
||||
/** This class is generally meant to work with dynamically allocated object,
|
||||
specifically objects allocated with operator new(). It will invoke operator
|
||||
delete() to destroy the managed object when its reference counter reaches
|
||||
zero. This behavior can be overriden by calling RefCounted::DontDelete() to
|
||||
ensure that an object will not be deleted by a SharedPtr that holds a
|
||||
pointer to it.
|
||||
@note This class is NOT thread-safe and does not support circular ownership.
|
||||
*/
|
||||
template <typename T>
|
||||
class SharedPtr
|
||||
{
|
||||
public:
|
||||
typedef T stored_type;
|
||||
|
||||
private:
|
||||
T *ptr;
|
||||
|
||||
void Init(T *new_ptr)
|
||||
{
|
||||
ptr = new_ptr;
|
||||
if (ptr) { ++ptr->RefCounted::ref_count; }
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
#elif 0
|
||||
mfem::out << " [" << _MFEM_FUNC_NAME << "]: ptr = " << ptr;
|
||||
if (ptr)
|
||||
{
|
||||
mfem::out << ", new ref_count = " << ptr->RefCounted::ref_count;
|
||||
}
|
||||
mfem::out << '\n';
|
||||
#endif
|
||||
}
|
||||
void Destroy()
|
||||
{
|
||||
MFEM_ASSERT(!ptr || ptr->RefCounted::ref_count >= 1, "invalid use");
|
||||
if (ptr && --ptr->RefCounted::ref_count == 0) { delete ptr; }
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
#elif 0
|
||||
mfem::out << " [" << _MFEM_FUNC_NAME << "]: ptr = " << ptr;
|
||||
if (ptr)
|
||||
{
|
||||
mfem::out << ", new ref_count = " << ptr->RefCounted::ref_count;
|
||||
}
|
||||
mfem::out << '\n';
|
||||
#endif
|
||||
}
|
||||
|
||||
public:
|
||||
SharedPtr() : ptr(NULL)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]: ptr = " << ptr << '\n';
|
||||
#endif
|
||||
}
|
||||
|
||||
SharedPtr(const SharedPtr &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Init(other.ptr);
|
||||
}
|
||||
|
||||
template <typename U>
|
||||
SharedPtr(const SharedPtr<U> &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Init(other.Get());
|
||||
}
|
||||
|
||||
explicit SharedPtr(T *p)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Init(p);
|
||||
}
|
||||
|
||||
~SharedPtr()
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Destroy();
|
||||
}
|
||||
|
||||
SharedPtr &operator=(const SharedPtr &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Reset(other.ptr); return *this;
|
||||
}
|
||||
|
||||
template <typename U>
|
||||
SharedPtr &operator=(const SharedPtr<U> &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Reset(other.Get()); return *this;
|
||||
}
|
||||
|
||||
T &operator*() const { return *ptr; }
|
||||
T *operator->() const { return ptr; }
|
||||
|
||||
operator bool() const { return ptr; }
|
||||
bool operator!() const { return !ptr; }
|
||||
|
||||
template <typename U>
|
||||
bool operator==(const SharedPtr<U> &other) const
|
||||
{ return ptr == other.Ptr(); }
|
||||
template <typename U>
|
||||
bool operator!=(const SharedPtr<U> &other) const
|
||||
{ return ptr != other.Ptr(); }
|
||||
|
||||
template <typename U>
|
||||
bool operator==(const U &p) const { return ptr == (void*) p; }
|
||||
template <typename U>
|
||||
bool operator!=(const U &p) const { return ptr != (void*) p; }
|
||||
|
||||
T *Get() const { return ptr; }
|
||||
|
||||
/// TODO
|
||||
template <typename derived_t>
|
||||
derived_t *As() const { return util::As<derived_t>(ptr); }
|
||||
|
||||
unsigned UseCount() const { return ptr ? ptr->RefCounted::ref_count : 0; }
|
||||
|
||||
void Reset()
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
Destroy();
|
||||
ptr = NULL;
|
||||
}
|
||||
|
||||
/// The type U* needs to be implicitly convertible to T*
|
||||
template <typename U>
|
||||
void Reset(U *new_ptr)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
if (ptr != new_ptr) { Destroy(); Init(new_ptr); }
|
||||
}
|
||||
|
||||
void Swap(SharedPtr &other)
|
||||
{
|
||||
#ifdef MFEM_TRACE_SHARED_PTR
|
||||
mfem::out << '[' << _MFEM_FUNC_NAME << "]\n";
|
||||
#endif
|
||||
std::swap(ptr, other.ptr);
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
template <class T>
|
||||
inline void Swap(SharedPtr<T> &a, SharedPtr<T> &b) { a.Swap(b); }
|
||||
|
||||
|
||||
class PLayout;
|
||||
typedef SharedPtr<PLayout> DLayout;
|
||||
|
||||
class PArray;
|
||||
typedef SharedPtr<PArray> DArray;
|
||||
|
||||
class PVector;
|
||||
typedef SharedPtr<PVector> DVector;
|
||||
|
||||
class PFiniteElementSpace;
|
||||
typedef SharedPtr<PFiniteElementSpace> DFiniteElementSpace;
|
||||
|
||||
class PBilinearForm;
|
||||
typedef SharedPtr<PBilinearForm> DBilinearForm;
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_SMART_POINTERS_HPP
|
||||
@@ -0,0 +1,52 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_UTILS_HPP
|
||||
#define MFEM_BACKENDS_BASE_UTILS_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "../../general/error.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace util
|
||||
{
|
||||
|
||||
//
|
||||
// Inline methods
|
||||
//
|
||||
|
||||
/// TODO: doxygen
|
||||
template <typename derived_t, typename base_t>
|
||||
inline derived_t *As(base_t *base_obj)
|
||||
{
|
||||
MFEM_ASSERT(dynamic_cast<derived_t*>(base_obj) != NULL,
|
||||
"invalid object type");
|
||||
return static_cast<derived_t*>(base_obj);
|
||||
}
|
||||
|
||||
/// TODO: doxygen
|
||||
template <typename derived_t, typename base_t>
|
||||
inline derived_t *Is(base_t *base_obj)
|
||||
{
|
||||
return dynamic_cast<derived_t*>(base_obj);
|
||||
}
|
||||
|
||||
} // namespace mfem::util
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_UTILS_HPP
|
||||
@@ -0,0 +1,153 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_BASE_VECTOR_HPP
|
||||
#define MFEM_BACKENDS_BASE_VECTOR_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
|
||||
#include "../../general/scalars.hpp"
|
||||
#include "array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
/// Polymorphic vector - array of scalars.
|
||||
class PVector : virtual public PArray
|
||||
{
|
||||
protected:
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/** @brief Create and return a new vector of the same dynamic type as this
|
||||
vector using the same layout with entries specified by @a buffer_type_id
|
||||
which should be a constant defined by the `value` field in a
|
||||
specialization of the template class mfem::ScalarId.
|
||||
|
||||
Returns NULL if allocation fails.
|
||||
|
||||
If @a copy_data is true, the contents of this vector is copied to the new
|
||||
vector; otherwise, the new vector remains uninitialized.
|
||||
|
||||
If @a buffer is not NULL, return the vector data of the newly created
|
||||
object (in @a *buffer), if it is stored as a contiguous array on the
|
||||
host; otherwise, set @a *buffer to NULL. */
|
||||
virtual PVector *DoVectorClone(bool copy_data, void **buffer,
|
||||
int buffer_type_id) const = 0;
|
||||
|
||||
/** @brief Compute and return the dot product of @a *this and @a x. In the
|
||||
case of an MPI-parallel vector, the result must be the MPI-global dot
|
||||
product. */
|
||||
/** Both vectors must have the same dynamic type and layout. */
|
||||
virtual void DoDotProduct(const PVector &x, void *result,
|
||||
int result_type_id) const = 0;
|
||||
|
||||
// TODO: add reduction operations: min, max, sum
|
||||
|
||||
/// Perform the operation @a *this = @a a @a x + @a b @a y.
|
||||
/** Rules:
|
||||
- the dynamic type of both @a x and @a y is the same as that of @a *this
|
||||
- if @a a == 0, neither @a x nor its data are accessed
|
||||
- if @a b == 0, neither @a y nor its data are accessed
|
||||
- @a x's data is never the same as @a y's data, unless @a a == 0, or
|
||||
@a b == 0
|
||||
- @a x's data or @a y's data may be the same as the data of @a *this
|
||||
- all accessed vectors, @a x, @a y, and @a *this have the same layout. */
|
||||
virtual void DoAxpby(const void *a, const PVector &x,
|
||||
const void *b, const PVector &y,
|
||||
int ab_type_id) = 0;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
|
||||
public:
|
||||
/** @brief Create a PVector. */
|
||||
/** The @a layout must be valid in the sense that layout != NULL and
|
||||
layout->HasEngine() == true. */
|
||||
PVector(PLayout &p_layout)
|
||||
: PArray(p_layout) { }
|
||||
|
||||
template <typename derived_t>
|
||||
derived_t &As() { return *util::As<derived_t>(this); }
|
||||
|
||||
template <typename derived_t>
|
||||
const derived_t &As() const { return *util::As<const derived_t>(this); }
|
||||
|
||||
|
||||
// TODO: Error handling ... handle errors at the Engine level, at the class
|
||||
// level, or at the method level?
|
||||
|
||||
// TODO: Asynchronous execution interface ...
|
||||
|
||||
// TODO: Multi-vector interface ...
|
||||
|
||||
|
||||
/**
|
||||
@name Public virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/** @brief Create and return a new vector of the same dynamic type as this
|
||||
vector using the same layout with entries of type @a scalar_t.
|
||||
|
||||
If @a copy_data is true, the contents of this vector is copied to the new
|
||||
vector; otherwise, the new vector remains uninitialized.
|
||||
|
||||
If @a buffer is not NULL, return the vector data of the newly created
|
||||
object (in @a *buffer) , if it is stored as a contiguous array on the
|
||||
host; otherwise, set @a *buffer to NULL. */
|
||||
template <typename scalar_t>
|
||||
DVector Clone(bool copy_data, scalar_t **buffer) const
|
||||
{
|
||||
return DVector(DoVectorClone(copy_data, (void**)buffer,
|
||||
ScalarId<scalar_t>::value));
|
||||
}
|
||||
|
||||
/** @brief Compute and return the dot product of @a *this and @a x. In the
|
||||
case of an MPI-parallel vector, the result must be the MPI-global dot
|
||||
product. */
|
||||
/** Both vectors must have the same dynamic type and layout. */
|
||||
template <typename scalar_t>
|
||||
scalar_t DotProduct(const PVector &x) const
|
||||
{
|
||||
scalar_t result;
|
||||
DoDotProduct(x, &result, ScalarId<scalar_t>::value);
|
||||
return result;
|
||||
}
|
||||
|
||||
// TODO: add reduction operations: min, max, sum
|
||||
|
||||
/// Perform the operation @a *this = @a a @a x + @a b @a y.
|
||||
/** Rules:
|
||||
- the dynamic type of both @a x and @a y is the same as that of @a *this
|
||||
- if @a a == 0, neither @a x nor its data are accessed
|
||||
- if @a b == 0, neither @a y nor its data are accessed
|
||||
- @a x's data is never the same as @a y's data, unless @a a == 0, or
|
||||
@a b == 0
|
||||
- @a x's data or @a y's data may be the same as the data of @a *this
|
||||
- all accessed vectors, @a x, @a y, and @a *this have the same layout. */
|
||||
template <typename scalar_t>
|
||||
void Axpby(const scalar_t &a, const PVector &x,
|
||||
const scalar_t &b, const PVector &y)
|
||||
{ if (Size()) { DoAxpby(&a, x, &b, y, ScalarId<scalar_t>::value); } }
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_USE_BACKENDS
|
||||
|
||||
#endif // MFEM_BACKENDS_BASE_VECTOR_HPP
|
||||
@@ -0,0 +1,66 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
ELEMENT_BATCH : How many elements are in each
|
||||
. computation batch
|
||||
NUM_DOFS_1D : Dofs in the 1D segments
|
||||
NUM_DOFS_2D : Dofs in the 2D faces
|
||||
NUM_DOFS_3D : Dofs in the 3D domain
|
||||
NUM_QUAD_1D : Dofs in the 1D segments
|
||||
NUM_QUAD_2D : Dofs in the 2D faces
|
||||
NUM_QUAD_3D : Dofs in the 3D domain
|
||||
NUM_MAX_1D : max(NUM_QUAD_1D, NUM_DOFS_1D)
|
||||
NUM_QUAD_DOFS_1D: NUM_QUAD_1D * NUM_DOFS_1D
|
||||
COEFF_ARGS : Code that passes required arguments to the kernel
|
||||
COEFF : Code that computes the coefficient
|
||||
================================================
|
||||
|
||||
[MISSING]
|
||||
- Add support to auto-pick @dim and use @idxOrder on stack arrays
|
||||
| double a[2][2];
|
||||
| a[0][1]; <-- regular index
|
||||
| a(0,1); <-- uses @idxOrder a[0][1] or a[1][0]
|
||||
- Add support for @idxOrder to change indexing order after allocation
|
||||
| double a[2][2] @idxOrder(0,1);
|
||||
| a(0,1) -> a[1][0]
|
||||
| @set(a, idxOrder(1,0));
|
||||
| a(0,1) -> a[0][1]
|
||||
- Add support to iterate over loop depending on mode
|
||||
| for(i; @inner) {
|
||||
| for(0 < j < N) {} <-- ++j or j += block?
|
||||
| }
|
||||
*/
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
#if USING_TENSOR_OPS
|
||||
# ifdef OCCA_USING_GPU
|
||||
# if USING_LOW_ORDER
|
||||
# include "mfem-occa://diffusion/tensor/gpuHighOrder.okl"
|
||||
# else
|
||||
# include "mfem-occa://diffusion/tensor/gpuHighOrder.okl"
|
||||
# endif
|
||||
# else
|
||||
# include "mfem-occa://diffusion/tensor/cpu.okl"
|
||||
# endif
|
||||
#else
|
||||
# ifdef OCCA_USING_GPU
|
||||
# if USING_LOW_ORDER
|
||||
# include "mfem-occa://diffusion/simplex/gpuHighOrder.okl"
|
||||
# else
|
||||
# include "mfem-occa://diffusion/simplex/gpuHighOrder.okl"
|
||||
# endif
|
||||
# else
|
||||
# include "mfem-occa://diffusion/simplex/cpu.okl"
|
||||
# endif
|
||||
#endif
|
||||
@@ -0,0 +1,123 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
PArray *Array::DoClone(bool copy_data, void **buffer,
|
||||
std::size_t item_size) const
|
||||
{
|
||||
Array *new_array = new Array(OccaLayout(), item_size);
|
||||
if (copy_data)
|
||||
{
|
||||
new_array->slice.copyFrom(slice);
|
||||
}
|
||||
if (buffer)
|
||||
{
|
||||
*buffer = new_array->GetBuffer();
|
||||
}
|
||||
return new_array;
|
||||
}
|
||||
|
||||
int Array::DoResize(PLayout &new_layout, void **buffer,
|
||||
std::size_t item_size)
|
||||
{
|
||||
MFEM_ASSERT(dynamic_cast<Layout *>(&new_layout) != NULL,
|
||||
"new_layout is not an OCCA Layout");
|
||||
Layout *lt = static_cast<Layout *>(&new_layout);
|
||||
layout.Reset(lt); // Reset() checks if the pointer is the same
|
||||
int err = ResizeData(lt, item_size);
|
||||
if (!err && buffer)
|
||||
{
|
||||
*buffer = GetBuffer();
|
||||
}
|
||||
return err;
|
||||
}
|
||||
|
||||
void *Array::DoPullData(void *buffer, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
if (!slice.getDevice().hasSeparateMemorySpace())
|
||||
{
|
||||
return slice.ptr();
|
||||
}
|
||||
if (buffer)
|
||||
{
|
||||
slice.copyTo(buffer);
|
||||
}
|
||||
return buffer;
|
||||
}
|
||||
|
||||
void Array::DoFill(const void *value_ptr, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
switch (item_size)
|
||||
{
|
||||
case sizeof(int8_t):
|
||||
OccaFill((const int8_t *)value_ptr);
|
||||
break;
|
||||
case sizeof(int16_t):
|
||||
OccaFill((const int16_t *)value_ptr);
|
||||
break;
|
||||
case sizeof(int32_t):
|
||||
OccaFill((const int32_t *)value_ptr);
|
||||
break;
|
||||
// case sizeof(int64_t):
|
||||
// OccaFill((const int64_t *)value_ptr);
|
||||
// break;
|
||||
case sizeof(double):
|
||||
OccaFill((const double *)value_ptr);
|
||||
break;
|
||||
// case sizeof(::occa::double2):
|
||||
// OccaFill((const ::occa::double2 *)value_ptr);
|
||||
// break;
|
||||
default:
|
||||
MFEM_ABORT("item_size = " << item_size << " is not supported");
|
||||
}
|
||||
}
|
||||
|
||||
void Array::DoPushData(const void *src_buffer, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
if (slice.getDevice().hasSeparateMemorySpace() || slice.ptr() != src_buffer)
|
||||
{
|
||||
slice.copyFrom(src_buffer);
|
||||
}
|
||||
}
|
||||
|
||||
void Array::DoAssign(const PArray &src, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
|
||||
// Note: static_cast can not be used here since PArray is a virtual base
|
||||
// class.
|
||||
const Array *source = dynamic_cast<const Array *>(&src);
|
||||
MFEM_ASSERT(source != NULL, "invalid source Array type");
|
||||
MFEM_ASSERT(Size() == source->Size(), "");
|
||||
slice.copyFrom(source->slice);
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,131 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_ARRAY_HPP
|
||||
#define MFEM_BACKENDS_OCCA_ARRAY_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
#include "layout.hpp"
|
||||
#include "../base/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Array : public virtual PArray
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// DLayout layout;
|
||||
|
||||
// Always true: Size()*item_size == slice.size() <= data.size()
|
||||
mutable ::occa::memory data, slice;
|
||||
|
||||
//
|
||||
// Virtual interface
|
||||
//
|
||||
|
||||
virtual PArray *DoClone(bool copy_data, void **buffer,
|
||||
std::size_t item_size) const;
|
||||
|
||||
virtual int DoResize(PLayout &new_layout, void **buffer,
|
||||
std::size_t item_size);
|
||||
|
||||
virtual void *DoPullData(void *buffer, std::size_t item_size);
|
||||
|
||||
virtual void DoFill(const void *value_ptr, std::size_t item_size);
|
||||
|
||||
virtual void DoPushData(const void *src_buffer, std::size_t item_size);
|
||||
|
||||
virtual void DoAssign(const PArray &src, std::size_t item_size);
|
||||
|
||||
//
|
||||
// Auxiliary methods
|
||||
//
|
||||
|
||||
inline void *GetBuffer() const;
|
||||
|
||||
inline int ResizeData(const Layout *lt, std::size_t item_size);
|
||||
|
||||
template <typename T>
|
||||
inline void OccaFill(const T *val_ptr)
|
||||
{ ::occa::linalg::operator_eq<T>(slice, *val_ptr); }
|
||||
|
||||
public:
|
||||
Array(Layout <, std::size_t item_size)
|
||||
: PArray(lt),
|
||||
data(lt.Alloc(lt.Size()*item_size)),
|
||||
slice(data)
|
||||
{ }
|
||||
|
||||
virtual ~Array() { }
|
||||
|
||||
inline void MakeRef(Array &master);
|
||||
|
||||
Layout &OccaLayout() const
|
||||
{ return *static_cast<Layout *>(layout.Get()); }
|
||||
|
||||
::occa::memory &OccaMem() { return slice; }
|
||||
const ::occa::memory &OccaMem() const { return slice; }
|
||||
};
|
||||
|
||||
|
||||
//
|
||||
// Inline methods
|
||||
//
|
||||
|
||||
inline void *Array::GetBuffer() const
|
||||
{
|
||||
if (!slice.getDevice().hasSeparateMemorySpace())
|
||||
{
|
||||
return slice.ptr();
|
||||
}
|
||||
return NULL;
|
||||
}
|
||||
|
||||
inline int Array::ResizeData(const Layout *lt, std::size_t item_size)
|
||||
{
|
||||
const std::size_t new_bytes = lt->Size()*item_size;
|
||||
if (data.size() < new_bytes ||
|
||||
data.getDHandle() != lt->OccaEngine().GetDevice().getDHandle())
|
||||
{
|
||||
data = lt->Alloc(new_bytes);
|
||||
slice = data;
|
||||
// If memory allocation fails - an exception is thrown.
|
||||
}
|
||||
else if (slice.size() != new_bytes)
|
||||
{
|
||||
slice = data.slice(0, new_bytes);
|
||||
}
|
||||
return 0;
|
||||
}
|
||||
|
||||
inline void Array::MakeRef(Array &master)
|
||||
{
|
||||
layout = master.layout;
|
||||
data = master.data;
|
||||
slice = master.slice;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_ARRAY_HPP
|
||||
@@ -0,0 +1,47 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
bool Backend::Supports(const std::string &engine_spec) const
|
||||
{
|
||||
// TODO: check if 'engine_spec' is valid OCCA string.
|
||||
return true;
|
||||
}
|
||||
|
||||
mfem::Engine *Create(const std::string &engine_spec)
|
||||
{
|
||||
return new Engine(engine_spec);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
mfem::Engine *Create(MPI_Comm comm, const std::string &engine_spec)
|
||||
{
|
||||
return new Engine(comm, engine_spec);
|
||||
}
|
||||
#endif
|
||||
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,49 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_BACKEND_HPP
|
||||
#define MFEM_BACKENDS_OCCA_BACKEND_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
// Only the Backend and Engine classes should be exposed through "backend.hpp"
|
||||
#include "../base/backend.hpp"
|
||||
#include "engine.hpp"
|
||||
#include <occa.hpp>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Backend : public mfem::Backend
|
||||
{
|
||||
public:
|
||||
virtual ~Backend();
|
||||
|
||||
virtual bool Supports(const std::string &engine_spec) const;
|
||||
|
||||
virtual mfem::Engine *Create(const std::string &engine_spec);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
virtual mfem::Engine *Create(MPI_Comm comm, const std::string &engine_spec);
|
||||
#endif
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_BACKEND_HPP
|
||||
@@ -0,0 +1,514 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "../../fem/bilinearform.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
OccaBilinearForm::OccaBilinearForm(FiniteElementSpace *ofespace_) :
|
||||
Operator(ofespace_->OccaVLayout()),
|
||||
localX(ofespace_->OccaEVLayout()),
|
||||
localY(ofespace_->OccaEVLayout())
|
||||
{
|
||||
Init(ofespace_->OccaEngine(), ofespace_, ofespace_);
|
||||
}
|
||||
|
||||
OccaBilinearForm::OccaBilinearForm(FiniteElementSpace *otrialFESpace_,
|
||||
FiniteElementSpace *otestFESpace_) :
|
||||
Operator(otrialFESpace_->OccaVLayout(),
|
||||
otestFESpace_->OccaVLayout()),
|
||||
localX(otrialFESpace_->OccaEVLayout()),
|
||||
localY(otestFESpace_->OccaEVLayout())
|
||||
{
|
||||
Init(otrialFESpace_->OccaEngine(), otrialFESpace_, otestFESpace_);
|
||||
}
|
||||
|
||||
void OccaBilinearForm::Init(const Engine &e,
|
||||
FiniteElementSpace *otrialFESpace_,
|
||||
FiniteElementSpace *otestFESpace_)
|
||||
{
|
||||
engine.Reset(&e);
|
||||
|
||||
otrialFESpace = otrialFESpace_;
|
||||
trialFESpace = otrialFESpace_->GetFESpace();
|
||||
|
||||
otestFESpace = otestFESpace_;
|
||||
testFESpace = otestFESpace_->GetFESpace();
|
||||
|
||||
mesh = trialFESpace->GetMesh();
|
||||
|
||||
const int elements = GetNE();
|
||||
|
||||
const int trialVDim = trialFESpace->GetVDim();
|
||||
|
||||
const int trialLocalDofs = otrialFESpace->GetLocalDofs();
|
||||
const int testLocalDofs = otestFESpace->GetLocalDofs();
|
||||
|
||||
// First-touch policy when running with OpenMP
|
||||
if (GetDevice().mode() == "OpenMP")
|
||||
{
|
||||
const std::string &okl_path = OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = OccaEngine().GetOklDefines();
|
||||
::occa::kernel initLocalKernel =
|
||||
GetDevice().buildKernel(okl_path + "utils.okl",
|
||||
"InitLocalVector",
|
||||
okl_defines);
|
||||
|
||||
const std::size_t sd = sizeof(double);
|
||||
const uint64_t trialEntries = sd * (elements * trialLocalDofs);
|
||||
const uint64_t testEntries = sd * (elements * testLocalDofs);
|
||||
for (int v = 0; v < trialVDim; ++v)
|
||||
{
|
||||
const uint64_t trialOffset = v * trialEntries;
|
||||
const uint64_t testOffset = v * testEntries;
|
||||
|
||||
initLocalKernel(elements, trialLocalDofs,
|
||||
localX.OccaMem().slice(trialOffset, trialEntries));
|
||||
initLocalKernel(elements, testLocalDofs,
|
||||
localY.OccaMem().slice(testOffset, testEntries));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
int OccaBilinearForm::BaseGeom() const
|
||||
{
|
||||
return mesh->GetElementBaseGeometry();
|
||||
}
|
||||
|
||||
int OccaBilinearForm::GetDim() const
|
||||
{
|
||||
return mesh->Dimension();
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetNE() const
|
||||
{
|
||||
return mesh->GetNE();
|
||||
}
|
||||
|
||||
Mesh& OccaBilinearForm::GetMesh() const
|
||||
{
|
||||
return *mesh;
|
||||
}
|
||||
|
||||
FiniteElementSpace& OccaBilinearForm::GetTrialOccaFESpace() const
|
||||
{
|
||||
return *otrialFESpace;
|
||||
}
|
||||
|
||||
FiniteElementSpace& OccaBilinearForm::GetTestOccaFESpace() const
|
||||
{
|
||||
return *otestFESpace;
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace& OccaBilinearForm::GetTrialFESpace() const
|
||||
{
|
||||
return *trialFESpace;
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace& OccaBilinearForm::GetTestFESpace() const
|
||||
{
|
||||
return *testFESpace;
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetTrialNDofs() const
|
||||
{
|
||||
return trialFESpace->GetNDofs();
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetTestNDofs() const
|
||||
{
|
||||
return testFESpace->GetNDofs();
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetTrialVDim() const
|
||||
{
|
||||
return trialFESpace->GetVDim();
|
||||
}
|
||||
|
||||
int64_t OccaBilinearForm::GetTestVDim() const
|
||||
{
|
||||
return testFESpace->GetVDim();
|
||||
}
|
||||
|
||||
const FiniteElement& OccaBilinearForm::GetTrialFE(const int i) const
|
||||
{
|
||||
return *(trialFESpace->GetFE(i));
|
||||
}
|
||||
|
||||
const FiniteElement& OccaBilinearForm::GetTestFE(const int i) const
|
||||
{
|
||||
return *(testFESpace->GetFE(i));
|
||||
}
|
||||
|
||||
// Adds new Domain Integrator.
|
||||
void OccaBilinearForm::AddDomainIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
AddIntegrator(integrator, props, DomainIntegrator);
|
||||
}
|
||||
|
||||
// Adds new Boundary Integrator.
|
||||
void OccaBilinearForm::AddBoundaryIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
AddIntegrator(integrator, props, BoundaryIntegrator);
|
||||
}
|
||||
|
||||
// Adds new interior Face Integrator.
|
||||
void OccaBilinearForm::AddInteriorFaceIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
AddIntegrator(integrator, props, InteriorFaceIntegrator);
|
||||
}
|
||||
|
||||
// Adds new boundary Face Integrator.
|
||||
void OccaBilinearForm::AddBoundaryFaceIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
AddIntegrator(integrator, props, BoundaryFaceIntegrator);
|
||||
}
|
||||
|
||||
// Adds Integrator based on OccaIntegratorType
|
||||
void OccaBilinearForm::AddIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props,
|
||||
const OccaIntegratorType itype)
|
||||
{
|
||||
if (integrator == NULL)
|
||||
{
|
||||
std::stringstream error_ss;
|
||||
error_ss << "OccaBilinearForm::";
|
||||
switch (itype)
|
||||
{
|
||||
case DomainIntegrator : error_ss << "AddDomainIntegrator"; break;
|
||||
case BoundaryIntegrator : error_ss << "AddBoundaryIntegrator"; break;
|
||||
case InteriorFaceIntegrator: error_ss << "AddInteriorFaceIntegrator"; break;
|
||||
case BoundaryFaceIntegrator: error_ss << "AddBoundaryFaceIntegrator"; break;
|
||||
}
|
||||
error_ss << " (...):\n"
|
||||
<< " Integrator is NULL";
|
||||
const std::string error = error_ss.str();
|
||||
mfem_error(error.c_str());
|
||||
}
|
||||
integrator->SetupIntegrator(*this, baseKernelProps + props, itype);
|
||||
integrators.push_back(integrator);
|
||||
}
|
||||
|
||||
const mfem::Operator* OccaBilinearForm::GetTrialProlongation() const
|
||||
{
|
||||
return otrialFESpace->GetProlongationOperator();
|
||||
}
|
||||
|
||||
const mfem::Operator* OccaBilinearForm::GetTestProlongation() const
|
||||
{
|
||||
return otestFESpace->GetProlongationOperator();
|
||||
}
|
||||
|
||||
const mfem::Operator* OccaBilinearForm::GetTrialRestriction() const
|
||||
{
|
||||
return otrialFESpace->GetRestrictionOperator();
|
||||
}
|
||||
|
||||
const mfem::Operator* OccaBilinearForm::GetTestRestriction() const
|
||||
{
|
||||
return otestFESpace->GetRestrictionOperator();
|
||||
}
|
||||
|
||||
void OccaBilinearForm::Assemble()
|
||||
{
|
||||
// [MISSING] Find geometric information that is needed by intergrators
|
||||
// to share between integrators.
|
||||
const int integratorCount = (int) integrators.size();
|
||||
for (int i = 0; i < integratorCount; ++i)
|
||||
{
|
||||
integrators[i]->Assemble();
|
||||
}
|
||||
}
|
||||
|
||||
void OccaBilinearForm::FormLinearSystem(const mfem::Array<int> &constraintList,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::Operator *&Aout,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior)
|
||||
{
|
||||
FormOperator(constraintList, Aout);
|
||||
InitRHS(constraintList, x, b, Aout, X, B, copy_interior);
|
||||
}
|
||||
|
||||
void OccaBilinearForm::FormOperator(const mfem::Array<int> &constraintList,
|
||||
mfem::Operator *&Aout)
|
||||
{
|
||||
const mfem::Operator *trialP = GetTrialProlongation();
|
||||
const mfem::Operator *testP = GetTestProlongation();
|
||||
mfem::Operator *rap = this;
|
||||
|
||||
if (trialP)
|
||||
{
|
||||
rap = new RAPOperator(*testP, *this, *trialP);
|
||||
}
|
||||
|
||||
Aout = new OccaConstrainedOperator(rap, constraintList,
|
||||
rap != this);
|
||||
}
|
||||
|
||||
void OccaBilinearForm::InitRHS(const mfem::Array<int> &constraintList,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::Operator *A,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior)
|
||||
{
|
||||
const std::string okl_defines = OccaEngine().GetOklDefines();
|
||||
|
||||
// FIXME: move these kernels to the Backend?
|
||||
static ::occa::kernelBuilder get_subvector_builder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"vector_get_subvector",
|
||||
|
||||
"const int dof_i = v2[i];"
|
||||
"v0[i] = dof_i >= 0 ? v1[dof_i] : -v1[-dof_i - 1];",
|
||||
|
||||
"defines: {"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" VTYPE2: 'int',"
|
||||
" TILESIZE: 128,"
|
||||
"}" + okl_defines);
|
||||
|
||||
static ::occa::kernelBuilder set_subvector_builder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"vector_set_subvector",
|
||||
"const int dof_i = v2[i];"
|
||||
"if (dof_i >= 0) { v0[dof_i] = v1[i]; }"
|
||||
"else { v0[-dof_i - 1] = -v1[i]; }",
|
||||
|
||||
"defines: {"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" VTYPE2: 'int',"
|
||||
" TILESIZE: 128,"
|
||||
"}" + okl_defines);
|
||||
|
||||
const mfem::Operator *P = GetTrialProlongation();
|
||||
const mfem::Operator *R = GetTrialRestriction();
|
||||
|
||||
if (P)
|
||||
{
|
||||
// Variational restriction with P
|
||||
B.Resize(P->InLayout());
|
||||
P->MultTranspose(b, B);
|
||||
X.Resize(R->OutLayout());
|
||||
R->Mult(x, X);
|
||||
}
|
||||
else
|
||||
{
|
||||
// rap, X and B point to the same data as this, x and b
|
||||
X.MakeRef(x);
|
||||
B.MakeRef(b);
|
||||
}
|
||||
|
||||
if (!copy_interior && constraintList.Size() > 0)
|
||||
{
|
||||
::occa::kernel get_subvector_kernel =
|
||||
get_subvector_builder.build(GetDevice());
|
||||
::occa::kernel set_subvector_kernel =
|
||||
set_subvector_builder.build(GetDevice());
|
||||
|
||||
const Array &constrList = constraintList.Get_PArray()->As<Array>();
|
||||
Vector subvec(constrList.OccaLayout());
|
||||
|
||||
get_subvector_kernel(constraintList.Size(),
|
||||
subvec.OccaMem(),
|
||||
X.Get_PVector()->As<Vector>().OccaMem(),
|
||||
constrList.OccaMem());
|
||||
|
||||
X.Fill(0.0);
|
||||
|
||||
set_subvector_kernel(constraintList.Size(),
|
||||
X.Get_PVector()->As<Vector>().OccaMem(),
|
||||
subvec.OccaMem(),
|
||||
constrList.OccaMem());
|
||||
}
|
||||
|
||||
OccaConstrainedOperator *cA = dynamic_cast<OccaConstrainedOperator*>(A);
|
||||
if (cA)
|
||||
{
|
||||
cA->EliminateRHS(X.Get_PVector()->As<Vector>(),
|
||||
B.Get_PVector()->As<Vector>());
|
||||
}
|
||||
else
|
||||
{
|
||||
mfem_error("OccaBilinearForm::InitRHS expects an OccaConstrainedOperator");
|
||||
}
|
||||
}
|
||||
|
||||
// Matrix vector multiplication.
|
||||
void OccaBilinearForm::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
otrialFESpace->GlobalToLocal(x, localX);
|
||||
localY.Fill<double>(0.0);
|
||||
|
||||
const int integratorCount = (int) integrators.size();
|
||||
for (int i = 0; i < integratorCount; ++i)
|
||||
{
|
||||
integrators[i]->MultAdd(localX, localY);
|
||||
}
|
||||
|
||||
otestFESpace->LocalToGlobal(localY, y);
|
||||
}
|
||||
|
||||
// Matrix transpose vector multiplication.
|
||||
void OccaBilinearForm::MultTranspose_(const Vector &x, Vector &y) const
|
||||
{
|
||||
otestFESpace->GlobalToLocal(x, localX);
|
||||
localY.Fill<double>(0.0);
|
||||
|
||||
const int integratorCount = (int) integrators.size();
|
||||
for (int i = 0; i < integratorCount; ++i)
|
||||
{
|
||||
integrators[i]->MultTransposeAdd(localX, localY);
|
||||
}
|
||||
|
||||
otrialFESpace->LocalToGlobal(localY, y);
|
||||
}
|
||||
|
||||
void OccaBilinearForm::OccaRecoverFEMSolution(const mfem::Vector &X,
|
||||
const mfem::Vector &b,
|
||||
mfem::Vector &x)
|
||||
{
|
||||
const mfem::Operator *P = this->GetTrialProlongation();
|
||||
if (P)
|
||||
{
|
||||
// Apply conforming prolongation
|
||||
x.Resize(P->OutLayout());
|
||||
P->Mult(X, x);
|
||||
}
|
||||
// Otherwise X and x point to the same data
|
||||
}
|
||||
|
||||
// Frees memory bilinear form.
|
||||
OccaBilinearForm::~OccaBilinearForm()
|
||||
{
|
||||
// Make sure all integrators free their data
|
||||
IntegratorVector::iterator it = integrators.begin();
|
||||
while (it != integrators.end())
|
||||
{
|
||||
delete *it;
|
||||
++it;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
void BilinearForm::InitOccaBilinearForm()
|
||||
{
|
||||
// Init 'obform' using 'bform'
|
||||
MFEM_ASSERT(bform != NULL, "");
|
||||
MFEM_ASSERT(obform == NULL, "");
|
||||
|
||||
FiniteElementSpace &ofes =
|
||||
bform->FESpace()->Get_PFESpace()->As<FiniteElementSpace>();
|
||||
obform = new OccaBilinearForm(&ofes);
|
||||
|
||||
// Transfer domain integrators
|
||||
mfem::Array<mfem::BilinearFormIntegrator*> &dbfi = *bform->GetDBFI();
|
||||
for (int i = 0; i < dbfi.Size(); i++)
|
||||
{
|
||||
std::string integ_name(dbfi[i]->Name());
|
||||
Coefficient *scal_coeff = dbfi[i]->GetScalarCoefficient();
|
||||
ConstantCoefficient *const_coeff =
|
||||
dynamic_cast<ConstantCoefficient*>(scal_coeff);
|
||||
// TODO: other types of coefficients ...
|
||||
double val = const_coeff ? const_coeff->constant : 1.0;
|
||||
OccaCoefficient ocoeff(obform->OccaEngine(), val);
|
||||
|
||||
OccaIntegrator *ointeg = NULL;
|
||||
|
||||
if (integ_name == "(undefined)")
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator does not define Name()");
|
||||
}
|
||||
else if (integ_name == "diffusion")
|
||||
{
|
||||
ointeg = new OccaDiffusionIntegrator(ocoeff);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator [Name() = " << integ_name
|
||||
<< "] is not supported");
|
||||
}
|
||||
|
||||
const mfem::IntegrationRule *ir = dbfi[i]->GetIntRule();
|
||||
if (ir) { ointeg->SetIntegrationRule(*ir); }
|
||||
|
||||
obform->AddDomainIntegrator(ointeg);
|
||||
}
|
||||
|
||||
// TODO: other types of integrators ...
|
||||
}
|
||||
|
||||
bool BilinearForm::Assemble()
|
||||
{
|
||||
if (obform == NULL) { InitOccaBilinearForm(); }
|
||||
|
||||
obform->Assemble();
|
||||
|
||||
return true; // --> host assembly is not needed
|
||||
}
|
||||
|
||||
void BilinearForm::FormSystemMatrix(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::OperatorHandle &A)
|
||||
{
|
||||
if (A.Type() == mfem::Operator::ANY_TYPE)
|
||||
{
|
||||
mfem::Operator *Aout = NULL;
|
||||
obform->FormOperator(ess_tdof_list, Aout);
|
||||
A.Reset(Aout);
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Operator::Type is not supported, type = " << A.Type());
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::FormLinearSystem(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::OperatorHandle &A,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior)
|
||||
{
|
||||
FormSystemMatrix(ess_tdof_list, A);
|
||||
obform->InitRHS(ess_tdof_list, x, b, A.Ptr(), X, B, copy_interior);
|
||||
}
|
||||
|
||||
void BilinearForm::RecoverFEMSolution(const mfem::Vector &X,
|
||||
const mfem::Vector &b,
|
||||
mfem::Vector &x)
|
||||
{
|
||||
obform->OccaRecoverFEMSolution(X, b, x);
|
||||
}
|
||||
|
||||
BilinearForm::~BilinearForm()
|
||||
{
|
||||
delete obform;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,213 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_BILINEAR_FORM_HPP
|
||||
#define MFEM_BACKENDS_OCCA_BILINEAR_FORM_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
enum OccaIntegratorType
|
||||
{
|
||||
DomainIntegrator = 0,
|
||||
BoundaryIntegrator = 1,
|
||||
InteriorFaceIntegrator = 2,
|
||||
BoundaryFaceIntegrator = 3
|
||||
};
|
||||
|
||||
class OccaIntegrator;
|
||||
|
||||
|
||||
/** Class for bilinear form - "Matrix" with associated FE space and
|
||||
BLFIntegrators. */
|
||||
class OccaBilinearForm : public Operator
|
||||
{
|
||||
friend class OccaIntegrator;
|
||||
|
||||
protected:
|
||||
typedef std::vector<OccaIntegrator*> IntegratorVector;
|
||||
|
||||
SharedPtr<const Engine> engine;
|
||||
|
||||
// State information
|
||||
mutable mfem::Mesh *mesh;
|
||||
|
||||
mutable FiniteElementSpace *otrialFESpace;
|
||||
mutable mfem::FiniteElementSpace *trialFESpace;
|
||||
|
||||
mutable FiniteElementSpace *otestFESpace;
|
||||
mutable mfem::FiniteElementSpace *testFESpace;
|
||||
|
||||
IntegratorVector integrators;
|
||||
|
||||
// Device data
|
||||
::occa::properties baseKernelProps;
|
||||
|
||||
// The input and output vectors are mapped to local nodes for efficient
|
||||
// operations. In other words, they are E-vectors.
|
||||
// The size is: (number of elements) * (nodes in element) * (vector dim)
|
||||
mutable Vector localX, localY;
|
||||
|
||||
public:
|
||||
OccaBilinearForm(FiniteElementSpace *ofespace_);
|
||||
|
||||
OccaBilinearForm(FiniteElementSpace *otrialFESpace_,
|
||||
FiniteElementSpace *otestFESpace_);
|
||||
|
||||
void Init(const Engine &e,
|
||||
FiniteElementSpace *otrialFESpace_,
|
||||
FiniteElementSpace *otestFESpace_);
|
||||
|
||||
const Engine &OccaEngine() const { return *engine; }
|
||||
|
||||
::occa::device GetDevice(int idx = 0) const
|
||||
{ return engine->GetDevice(idx); }
|
||||
|
||||
// Useful mesh Information
|
||||
int BaseGeom() const;
|
||||
int GetDim() const;
|
||||
int64_t GetNE() const;
|
||||
|
||||
mfem::Mesh& GetMesh() const;
|
||||
|
||||
FiniteElementSpace& GetTrialOccaFESpace() const;
|
||||
FiniteElementSpace& GetTestOccaFESpace() const;
|
||||
|
||||
mfem::FiniteElementSpace& GetTrialFESpace() const;
|
||||
mfem::FiniteElementSpace& GetTestFESpace() const;
|
||||
|
||||
// Useful FE information
|
||||
int64_t GetTrialNDofs() const;
|
||||
int64_t GetTestNDofs() const;
|
||||
|
||||
int64_t GetTrialVDim() const;
|
||||
int64_t GetTestVDim() const;
|
||||
|
||||
const mfem::FiniteElement& GetTrialFE(const int i) const;
|
||||
const mfem::FiniteElement& GetTestFE(const int i) const;
|
||||
|
||||
// Adds new Domain Integrator.
|
||||
void AddDomainIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props =
|
||||
::occa::properties());
|
||||
|
||||
// Adds new Boundary Integrator.
|
||||
void AddBoundaryIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props =
|
||||
::occa::properties());
|
||||
|
||||
// Adds new interior Face Integrator.
|
||||
void AddInteriorFaceIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props =
|
||||
::occa::properties());
|
||||
|
||||
// Adds new boundary Face Integrator.
|
||||
void AddBoundaryFaceIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props =
|
||||
::occa::properties());
|
||||
|
||||
// Adds Integrator based on OccaIntegratorType
|
||||
void AddIntegrator(OccaIntegrator *integrator,
|
||||
const ::occa::properties &props,
|
||||
const OccaIntegratorType itype);
|
||||
|
||||
virtual const mfem::Operator *GetTrialProlongation() const;
|
||||
virtual const mfem::Operator *GetTestProlongation() const;
|
||||
|
||||
virtual const mfem::Operator *GetTrialRestriction() const;
|
||||
virtual const mfem::Operator *GetTestRestriction() const;
|
||||
|
||||
// Assembles the form i.e. sums over all domain/bdr integrators.
|
||||
virtual void Assemble();
|
||||
|
||||
void FormLinearSystem(const mfem::Array<int> &constraintList,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::Operator *&Aout,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior = 0);
|
||||
|
||||
void FormOperator(const mfem::Array<int> &constraintList,
|
||||
mfem::Operator *&Aout);
|
||||
|
||||
void InitRHS(const mfem::Array<int> &constraintList,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::Operator *Aout,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior = 0);
|
||||
|
||||
// overrides
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
virtual void MultTranspose_(const Vector &x, Vector &y) const;
|
||||
|
||||
void OccaRecoverFEMSolution(const mfem::Vector &X, const mfem::Vector &b,
|
||||
mfem::Vector &x);
|
||||
|
||||
// Destroys bilinear form.
|
||||
~OccaBilinearForm();
|
||||
};
|
||||
|
||||
|
||||
/// TODO: doxygen
|
||||
class BilinearForm : public mfem::PBilinearForm
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// mfem::BilinearForm *bform;
|
||||
OccaBilinearForm *obform;
|
||||
|
||||
// Called from Assemble() if obform is NULL to initialize obform.
|
||||
void InitOccaBilinearForm();
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
BilinearForm(const Engine &e, mfem::BilinearForm &bf)
|
||||
: mfem::PBilinearForm(e, bf), obform(NULL) { }
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~BilinearForm();
|
||||
|
||||
/// Assemble the PBilinearForm.
|
||||
/** This method is called from the method mfem::BilinearForm::Assemble() of
|
||||
the associated mfem::BilinearForm, #bform.
|
||||
@returns True, if the host assembly should NOT be performed. */
|
||||
virtual bool Assemble();
|
||||
|
||||
virtual void FormSystemMatrix(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::OperatorHandle &A);
|
||||
|
||||
virtual void FormLinearSystem(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::OperatorHandle &A,
|
||||
mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior);
|
||||
|
||||
virtual void RecoverFEMSolution(const mfem::Vector &X, const mfem::Vector &b,
|
||||
mfem::Vector &x);
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_BILINEAR_FORM_HPP
|
||||
@@ -0,0 +1,956 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "bilininteg.hpp"
|
||||
#include "../../fem/fem.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
std::map<std::string, OccaDofQuadMaps> OccaDofQuadMaps::AllDofQuadMaps;
|
||||
|
||||
OccaGeometry OccaGeometry::Get(::occa::device device,
|
||||
FiniteElementSpace &ofespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const int flags)
|
||||
{
|
||||
OccaGeometry geom;
|
||||
|
||||
mfem::Mesh &mesh = *(ofespace.GetMesh());
|
||||
if (!mesh.GetNodes())
|
||||
{
|
||||
mesh.SetCurvature(1, false, -1, mfem::Ordering::byVDIM);
|
||||
}
|
||||
mfem::GridFunction &nodes = *(mesh.GetNodes());
|
||||
const mfem::FiniteElementSpace &fespace = *(nodes.FESpace());
|
||||
const mfem::FiniteElement &fe = *(fespace.GetFE(0));
|
||||
|
||||
const int dims = fe.GetDim();
|
||||
const int elements = fespace.GetNE();
|
||||
const int numDofs = fe.GetDof();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
MFEM_ASSERT(dims == mesh.SpaceDimension(), "");
|
||||
|
||||
geom.meshNodes.allocate(device,
|
||||
dims, numDofs, elements);
|
||||
|
||||
const mfem::Table &e2dTable = fespace.GetElementToDofTable();
|
||||
const int *elementMap = e2dTable.GetJ();
|
||||
nodes.Pull();
|
||||
for (int e = 0; e < elements; ++e)
|
||||
{
|
||||
for (int dof = 0; dof < numDofs; ++dof)
|
||||
{
|
||||
const int gid = elementMap[dof + numDofs*e];
|
||||
for (int dim = 0; dim < dims; ++dim)
|
||||
{
|
||||
geom.meshNodes(dim, dof, e) = nodes[fespace.DofToVDof(gid,dim)];
|
||||
}
|
||||
}
|
||||
}
|
||||
geom.meshNodes.keepInDevice();
|
||||
|
||||
if (flags & Jacobian)
|
||||
{
|
||||
geom.J.allocate(device,
|
||||
dims, dims, numQuad, elements);
|
||||
}
|
||||
else
|
||||
{
|
||||
geom.J.allocate(device, 1);
|
||||
}
|
||||
if (flags & JacobianInv)
|
||||
{
|
||||
geom.invJ.allocate(device,
|
||||
dims, dims, numQuad, elements);
|
||||
}
|
||||
else
|
||||
{
|
||||
geom.invJ.allocate(device, 1);
|
||||
}
|
||||
if (flags & JacobianDet)
|
||||
{
|
||||
geom.detJ.allocate(device,
|
||||
numQuad, elements);
|
||||
}
|
||||
else
|
||||
{
|
||||
geom.detJ.allocate(device, 1);
|
||||
}
|
||||
|
||||
geom.J.stopManaging();
|
||||
geom.invJ.stopManaging();
|
||||
geom.detJ.stopManaging();
|
||||
|
||||
OccaDofQuadMaps &maps = OccaDofQuadMaps::GetSimplexMaps(device, fe, ir);
|
||||
|
||||
::occa::properties props;
|
||||
props["defines/NUM_DOFS"] = numDofs;
|
||||
props["defines/NUM_QUAD"] = numQuad;
|
||||
props["defines/STORE_JACOBIAN"] = (flags & Jacobian);
|
||||
props["defines/STORE_JACOBIAN_INV"] = (flags & JacobianInv);
|
||||
props["defines/STORE_JACOBIAN_DET"] = (flags & JacobianDet);
|
||||
|
||||
const std::string &okl_path = ofespace.OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = ofespace.OccaEngine().GetOklDefines();
|
||||
::occa::kernel init = device.buildKernel(okl_path + "geometry.okl",
|
||||
stringWithDim("InitGeometryInfo",
|
||||
fe.GetDim()),
|
||||
props + okl_defines);
|
||||
init(elements,
|
||||
maps.dofToQuadD,
|
||||
geom.meshNodes,
|
||||
geom.J, geom.invJ, geom.detJ);
|
||||
|
||||
return geom;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps::OccaDofQuadMaps() :
|
||||
hash() {}
|
||||
|
||||
OccaDofQuadMaps::OccaDofQuadMaps(const OccaDofQuadMaps &maps)
|
||||
{
|
||||
*this = maps;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::operator = (const OccaDofQuadMaps &maps)
|
||||
{
|
||||
hash = maps.hash;
|
||||
dofToQuad = maps.dofToQuad;
|
||||
dofToQuadD = maps.dofToQuadD;
|
||||
quadToDof = maps.quadToDof;
|
||||
quadToDofD = maps.quadToDofD;
|
||||
quadWeights = maps.quadWeights;
|
||||
return *this;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::Get(::occa::device device,
|
||||
const FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return Get(device,
|
||||
*fespace.GetFE(0),
|
||||
*fespace.GetFE(0),
|
||||
ir,
|
||||
transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::Get(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return Get(device, fe, fe, ir, transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::Get(::occa::device device,
|
||||
const FiniteElementSpace &trialFESpace,
|
||||
const FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return Get(device,
|
||||
*trialFESpace.GetFE(0),
|
||||
*testFESpace.GetFE(0),
|
||||
ir,
|
||||
transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::Get(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return (dynamic_cast<const mfem::TensorBasisElement*>(&trialFE)
|
||||
? GetTensorMaps(device, trialFE, testFE, ir, transpose)
|
||||
: GetSimplexMaps(device, trialFE, testFE, ir, transpose));
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::GetTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return GetTensorMaps(device,
|
||||
fe, fe,
|
||||
ir, transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::GetTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
const mfem::TensorBasisElement &trialTFE =
|
||||
dynamic_cast<const mfem::TensorBasisElement&>(trialFE);
|
||||
const mfem::TensorBasisElement &testTFE =
|
||||
dynamic_cast<const mfem::TensorBasisElement&>(testFE);
|
||||
|
||||
std::stringstream ss;
|
||||
ss << ::occa::hash(device)
|
||||
<< "Tensor"
|
||||
<< "O1:" << trialFE.GetOrder()
|
||||
<< "O2:" << testFE.GetOrder()
|
||||
<< "BT1:" << trialTFE.GetBasisType()
|
||||
<< "BT2:" << testTFE.GetBasisType()
|
||||
<< "Q:" << ir.GetNPoints();
|
||||
std::string hash = ss.str();
|
||||
|
||||
// If we've already made the dof-quad maps, reuse them
|
||||
OccaDofQuadMaps &maps = AllDofQuadMaps[hash];
|
||||
if (!maps.hash.size())
|
||||
{
|
||||
// Create the dof-quad maps
|
||||
maps.hash = hash;
|
||||
|
||||
OccaDofQuadMaps trialMaps = GetD2QTensorMaps(device, trialFE, ir);
|
||||
OccaDofQuadMaps testMaps = GetD2QTensorMaps(device, testFE , ir, true);
|
||||
|
||||
maps.dofToQuad = trialMaps.dofToQuad;
|
||||
maps.dofToQuadD = trialMaps.dofToQuadD;
|
||||
maps.quadToDof = testMaps.dofToQuad;
|
||||
maps.quadToDofD = testMaps.dofToQuadD;
|
||||
maps.quadWeights = testMaps.quadWeights;
|
||||
}
|
||||
return maps;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps OccaDofQuadMaps::GetD2QTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
const mfem::TensorBasisElement &tfe =
|
||||
dynamic_cast<const mfem::TensorBasisElement&>(fe);
|
||||
|
||||
const mfem::Poly_1D::Basis &basis = tfe.GetBasis1D();
|
||||
const int order = fe.GetOrder();
|
||||
// [MISSING] Get 1D dofs
|
||||
const int dofs = order + 1;
|
||||
const int dims = fe.GetDim();
|
||||
|
||||
// Create the dof -> quadrature point map
|
||||
const mfem::IntegrationRule &ir1D =
|
||||
mfem::IntRules.Get(mfem::Geometry::SEGMENT, ir.GetOrder());
|
||||
const int quadPoints = ir1D.GetNPoints();
|
||||
const int quadPoints2D = quadPoints*quadPoints;
|
||||
const int quadPoints3D = quadPoints2D*quadPoints;
|
||||
const int quadPointsND = ((dims == 1) ? quadPoints :
|
||||
((dims == 2) ? quadPoints2D : quadPoints3D));
|
||||
|
||||
OccaDofQuadMaps maps;
|
||||
// Initialize the dof -> quad mapping
|
||||
maps.dofToQuad.allocate(device,
|
||||
quadPoints, dofs);
|
||||
maps.dofToQuadD.allocate(device,
|
||||
quadPoints, dofs);
|
||||
|
||||
double *quadWeights1DData = NULL;
|
||||
|
||||
if (transpose)
|
||||
{
|
||||
maps.dofToQuad.reindex(1,0);
|
||||
maps.dofToQuadD.reindex(1,0);
|
||||
// Initialize quad weights only for transpose
|
||||
maps.quadWeights.allocate(device,
|
||||
quadPointsND);
|
||||
quadWeights1DData = new double[quadPoints];
|
||||
}
|
||||
|
||||
mfem::Vector d2q(dofs);
|
||||
mfem::Vector d2qD(dofs);
|
||||
for (int q = 0; q < quadPoints; ++q)
|
||||
{
|
||||
const mfem::IntegrationPoint &ip = ir1D.IntPoint(q);
|
||||
basis.Eval(ip.x, d2q, d2qD);
|
||||
if (transpose)
|
||||
{
|
||||
quadWeights1DData[q] = ip.weight;
|
||||
}
|
||||
for (int d = 0; d < dofs; ++d)
|
||||
{
|
||||
maps.dofToQuad(q, d) = d2q[d];
|
||||
maps.dofToQuadD(q, d) = d2qD[d];
|
||||
}
|
||||
}
|
||||
|
||||
maps.dofToQuad.keepInDevice();
|
||||
maps.dofToQuadD.keepInDevice();
|
||||
|
||||
if (transpose)
|
||||
{
|
||||
for (int q = 0; q < quadPointsND; ++q)
|
||||
{
|
||||
const int qx = q % quadPoints;
|
||||
const int qz = q / quadPoints2D;
|
||||
const int qy = (q - qz*quadPoints2D) / quadPoints;
|
||||
double w = quadWeights1DData[qx];
|
||||
if (dims > 1)
|
||||
{
|
||||
w *= quadWeights1DData[qy];
|
||||
}
|
||||
if (dims > 2)
|
||||
{
|
||||
w *= quadWeights1DData[qz];
|
||||
}
|
||||
maps.quadWeights[q] = w;
|
||||
}
|
||||
maps.quadWeights.keepInDevice();
|
||||
delete [] quadWeights1DData;
|
||||
}
|
||||
|
||||
return maps;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::GetSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
return GetSimplexMaps(device,
|
||||
fe, fe,
|
||||
ir, transpose);
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaDofQuadMaps::GetSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
std::stringstream ss;
|
||||
ss << ::occa::hash(device)
|
||||
<< "Simplex"
|
||||
<< "O1:" << trialFE.GetOrder()
|
||||
<< "O2:" << testFE.GetOrder()
|
||||
<< "Q:" << ir.GetNPoints();
|
||||
std::string hash = ss.str();
|
||||
|
||||
// If we've already made the dof-quad maps, reuse them
|
||||
OccaDofQuadMaps &maps = AllDofQuadMaps[hash];
|
||||
if (!maps.hash.size())
|
||||
{
|
||||
// Create the dof-quad maps
|
||||
maps.hash = hash;
|
||||
|
||||
OccaDofQuadMaps trialMaps = GetD2QSimplexMaps(device, trialFE, ir);
|
||||
OccaDofQuadMaps testMaps = GetD2QSimplexMaps(device, testFE , ir, true);
|
||||
|
||||
maps.dofToQuad = trialMaps.dofToQuad;
|
||||
maps.dofToQuadD = trialMaps.dofToQuadD;
|
||||
maps.quadToDof = testMaps.dofToQuad;
|
||||
maps.quadToDofD = testMaps.dofToQuadD;
|
||||
maps.quadWeights = testMaps.quadWeights;
|
||||
}
|
||||
return maps;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps OccaDofQuadMaps::GetD2QSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose)
|
||||
{
|
||||
const int dims = fe.GetDim();
|
||||
const int numDofs = fe.GetDof();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
OccaDofQuadMaps maps;
|
||||
// Initialize the dof -> quad mapping
|
||||
maps.dofToQuad.allocate(device,
|
||||
numQuad, numDofs);
|
||||
maps.dofToQuadD.allocate(device,
|
||||
dims, numQuad, numDofs);
|
||||
|
||||
if (transpose)
|
||||
{
|
||||
maps.dofToQuad.reindex(1,0);
|
||||
maps.dofToQuadD.reindex(1,0);
|
||||
// Initialize quad weights only for transpose
|
||||
maps.quadWeights.allocate(device,
|
||||
numQuad);
|
||||
}
|
||||
|
||||
mfem::Vector d2q(numDofs);
|
||||
mfem::DenseMatrix d2qD(numDofs, dims);
|
||||
for (int q = 0; q < numQuad; ++q)
|
||||
{
|
||||
const mfem::IntegrationPoint &ip = ir.IntPoint(q);
|
||||
if (transpose)
|
||||
{
|
||||
maps.quadWeights[q] = ip.weight;
|
||||
}
|
||||
fe.CalcShape(ip, d2q);
|
||||
fe.CalcDShape(ip, d2qD);
|
||||
for (int d = 0; d < numDofs; ++d)
|
||||
{
|
||||
const double w = d2q[d];
|
||||
maps.dofToQuad(q, d) = w;
|
||||
for (int dim = 0; dim < dims; ++dim)
|
||||
{
|
||||
const double wD = d2qD(d, dim);
|
||||
maps.dofToQuadD(dim, q, d) = wD;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
maps.dofToQuad.keepInDevice();
|
||||
maps.dofToQuadD.keepInDevice();
|
||||
if (transpose)
|
||||
{
|
||||
maps.quadWeights.keepInDevice();
|
||||
}
|
||||
|
||||
return maps;
|
||||
}
|
||||
|
||||
//---[ Integrator Defines ]-----------
|
||||
std::string stringWithDim(const std::string &s, const int dim)
|
||||
{
|
||||
std::string ret = s;
|
||||
ret += ('0' + (char) dim);
|
||||
ret += 'D';
|
||||
return ret;
|
||||
}
|
||||
|
||||
int closestWarpBatchTo(const int value)
|
||||
{
|
||||
return ((value + 31) / 32) * 32;
|
||||
}
|
||||
|
||||
int closestMultipleWarpBatch(const int multiple, const int maxSize)
|
||||
{
|
||||
if (multiple > maxSize)
|
||||
{
|
||||
return maxSize;
|
||||
}
|
||||
int batch = (32 / multiple);
|
||||
int minDiff = 32 - (multiple * batch);
|
||||
for (int i = 64; i <= maxSize; i += 32)
|
||||
{
|
||||
const int newDiff = i - (multiple * (i / multiple));
|
||||
if (newDiff < minDiff)
|
||||
{
|
||||
batch = (i / multiple);
|
||||
minDiff = newDiff;
|
||||
}
|
||||
}
|
||||
return batch;
|
||||
}
|
||||
|
||||
void SetProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
SetProperties(fespace, fespace, ir, props);
|
||||
}
|
||||
|
||||
void SetProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
props["defines/TRIAL_VDIM"] = trialFESpace.GetVDim();
|
||||
props["defines/TEST_VDIM"] = testFESpace.GetVDim();
|
||||
props["defines/NUM_DIM"] = trialFESpace.GetDim();
|
||||
|
||||
if (trialFESpace.hasTensorBasis())
|
||||
{
|
||||
SetTensorProperties(trialFESpace, testFESpace, ir, props);
|
||||
}
|
||||
else
|
||||
{
|
||||
SetSimplexProperties(trialFESpace, testFESpace, ir, props);
|
||||
}
|
||||
}
|
||||
|
||||
void SetTensorProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
SetTensorProperties(fespace, fespace, ir, props);
|
||||
}
|
||||
|
||||
void SetTensorProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
const mfem::FiniteElement &trialFE = *(trialFESpace.GetFE(0));
|
||||
const mfem::FiniteElement &testFE = *(testFESpace.GetFE(0));
|
||||
|
||||
const mfem::IntegrationRule &ir1D =
|
||||
mfem::IntRules.Get(mfem::Geometry::SEGMENT, ir.GetOrder());
|
||||
|
||||
const int trialDofs = trialFE.GetDof();
|
||||
const int testDofs = testFE.GetDof();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
const int trialDofs1D = trialFE.GetOrder() + 1;
|
||||
const int testDofs1D = testFE.GetOrder() + 1;
|
||||
const int quad1D = ir1D.GetNPoints();
|
||||
int trialDofsND = trialDofs1D;
|
||||
int testDofsND = testDofs1D;
|
||||
int quadND = quad1D;
|
||||
|
||||
const bool trialByVDIM = (trialFESpace.GetOrdering() == mfem::Ordering::byVDIM);
|
||||
const bool testByVDIM = (testFESpace.GetOrdering() == mfem::Ordering::byVDIM);
|
||||
|
||||
props["defines/ORDERING_BY_NODES"] = 0;
|
||||
props["defines/ORDERING_BY_VDIM"] = 1;
|
||||
props["defines/VDIM_ORDERING"] = (int) trialByVDIM;
|
||||
props["defines/TRIAL_ORDERING"] = (int) trialByVDIM;
|
||||
props["defines/TEST_ORDERING"] = (int) testByVDIM;
|
||||
|
||||
props["defines/USING_TENSOR_OPS"] = 1;
|
||||
props["defines/NUM_DOFS"] = trialDofs;
|
||||
props["defines/NUM_QUAD"] = numQuad;
|
||||
|
||||
props["defines/TRIAL_DOFS"] = trialDofs;
|
||||
props["defines/TEST_DOFS"] = testDofs;
|
||||
|
||||
for (int d = 1; d <= 3; ++d)
|
||||
{
|
||||
if (d > 1)
|
||||
{
|
||||
trialDofsND *= trialDofs1D;
|
||||
testDofsND *= testDofs1D;
|
||||
quadND *= quad1D;
|
||||
}
|
||||
props["defines"][stringWithDim("NUM_DOFS_", d)] = trialDofsND;
|
||||
props["defines"][stringWithDim("NUM_QUAD_", d)] = quadND;
|
||||
|
||||
props["defines"][stringWithDim("TRIAL_DOFS_", d)] = trialDofsND;
|
||||
props["defines"][stringWithDim("TEST_DOFS_" , d)] = testDofsND;
|
||||
}
|
||||
|
||||
// 1D Defines
|
||||
const int m1InnerBatch = 32 * ((quad1D + 31) / 32);
|
||||
props["defines/A1_ELEMENT_BATCH"] = closestMultipleWarpBatch(quad1D, 512);
|
||||
props["defines/M1_OUTER_ELEMENT_BATCH"] = closestMultipleWarpBatch(m1InnerBatch,
|
||||
512);
|
||||
props["defines/M1_INNER_ELEMENT_BATCH"] = m1InnerBatch;
|
||||
|
||||
// 2D Defines
|
||||
props["defines/A2_ELEMENT_BATCH"] = 1;
|
||||
props["defines/A2_QUAD_BATCH"] = 1;
|
||||
props["defines/M2_ELEMENT_BATCH"] = 32;
|
||||
|
||||
// 3D Defines
|
||||
const int a3QuadBatch = closestMultipleWarpBatch(quadND, 512);
|
||||
props["defines/A3_ELEMENT_BATCH"] = closestMultipleWarpBatch(a3QuadBatch, 512);
|
||||
props["defines/A3_QUAD_BATCH"] = a3QuadBatch;
|
||||
}
|
||||
|
||||
void SetSimplexProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
SetSimplexProperties(fespace, fespace, ir, props);
|
||||
}
|
||||
|
||||
void SetSimplexProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props)
|
||||
{
|
||||
const mfem::FiniteElement &trialFE = *(trialFESpace.GetFE(0));
|
||||
const mfem::FiniteElement &testFE = *(testFESpace.GetFE(0));
|
||||
|
||||
const int trialDofs = trialFE.GetDof();
|
||||
const int testDofs = testFE.GetDof();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
const int maxDQ = std::max(std::max(trialDofs, testDofs), numQuad);
|
||||
|
||||
const bool trialByVDIM = (trialFESpace.GetOrdering() == mfem::Ordering::byVDIM);
|
||||
const bool testByVDIM = (testFESpace.GetOrdering() == mfem::Ordering::byVDIM);
|
||||
|
||||
props["defines/ORDERING_BY_NODES"] = 0;
|
||||
props["defines/ORDERING_BY_VDIM"] = 1;
|
||||
props["defines/VDIM_ORDERING"] = (int) trialByVDIM;
|
||||
props["defines/TRIAL_ORDERING"] = (int) trialByVDIM;
|
||||
props["defines/TEST_ORDERING"] = (int) testByVDIM;
|
||||
|
||||
props["defines/USING_TENSOR_OPS"] = 0;
|
||||
props["defines/NUM_DOFS"] = trialDofs;
|
||||
props["defines/NUM_QUAD"] = numQuad;
|
||||
|
||||
props["defines/TRIAL_DOFS"] = trialDofs;
|
||||
props["defines/TEST_DOFS"] = testDofs;
|
||||
|
||||
// 2D Defines
|
||||
const int quadBatch = closestWarpBatchTo(numQuad);
|
||||
props["defines/A2_ELEMENT_BATCH"] = closestMultipleWarpBatch(quadBatch, 2048);
|
||||
props["defines/A2_QUAD_BATCH"] = quadBatch;
|
||||
props["defines/M2_INNER_BATCH"] = closestWarpBatchTo(maxDQ);
|
||||
|
||||
// 3D Defines
|
||||
props["defines/A3_ELEMENT_BATCH"] = closestMultipleWarpBatch(quadBatch, 2048);
|
||||
props["defines/A3_QUAD_BATCH"] = quadBatch;
|
||||
props["defines/M3_INNER_BATCH"] = closestWarpBatchTo(maxDQ);
|
||||
}
|
||||
|
||||
|
||||
//---[ Base Integrator ]--------------
|
||||
OccaIntegrator::OccaIntegrator(const Engine &e)
|
||||
: engine(&e),
|
||||
bform(),
|
||||
mesh(),
|
||||
otrialFESpace(),
|
||||
otestFESpace(),
|
||||
trialFESpace(),
|
||||
testFESpace(),
|
||||
itype(DomainIntegrator),
|
||||
ir(NULL),
|
||||
hasTensorBasis(false) { }
|
||||
|
||||
OccaIntegrator::~OccaIntegrator() {}
|
||||
|
||||
void OccaIntegrator::SetupMaps()
|
||||
{
|
||||
maps = OccaDofQuadMaps::Get(GetDevice(),
|
||||
*otrialFESpace,
|
||||
*otestFESpace,
|
||||
*ir);
|
||||
|
||||
mapsTranspose = OccaDofQuadMaps::Get(GetDevice(),
|
||||
*otestFESpace,
|
||||
*otrialFESpace,
|
||||
*ir);
|
||||
}
|
||||
|
||||
FiniteElementSpace& OccaIntegrator::GetTrialOccaFESpace() const
|
||||
{
|
||||
return *otrialFESpace;
|
||||
}
|
||||
|
||||
FiniteElementSpace& OccaIntegrator::GetTestOccaFESpace() const
|
||||
{
|
||||
return *otestFESpace;
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace& OccaIntegrator::GetTrialFESpace() const
|
||||
{
|
||||
return *trialFESpace;
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace& OccaIntegrator::GetTestFESpace() const
|
||||
{
|
||||
return *testFESpace;
|
||||
}
|
||||
|
||||
void OccaIntegrator::SetIntegrationRule(const mfem::IntegrationRule &ir_)
|
||||
{
|
||||
ir = &ir_;
|
||||
}
|
||||
|
||||
const mfem::IntegrationRule& OccaIntegrator::GetIntegrationRule() const
|
||||
{
|
||||
return *ir;
|
||||
}
|
||||
|
||||
OccaDofQuadMaps& OccaIntegrator::GetDofQuadMaps()
|
||||
{
|
||||
return maps;
|
||||
}
|
||||
|
||||
void OccaIntegrator::SetupIntegrator(OccaBilinearForm &bform_,
|
||||
const ::occa::properties &props_,
|
||||
const OccaIntegratorType itype_)
|
||||
{
|
||||
MFEM_ASSERT(engine == &bform_.OccaEngine(), "");
|
||||
bform = &bform_;
|
||||
mesh = &(bform_.GetMesh());
|
||||
|
||||
otrialFESpace = &(bform_.GetTrialOccaFESpace());
|
||||
otestFESpace = &(bform_.GetTestOccaFESpace());
|
||||
|
||||
trialFESpace = &(bform_.GetTrialFESpace());
|
||||
testFESpace = &(bform_.GetTestFESpace());
|
||||
|
||||
hasTensorBasis = otrialFESpace->hasTensorBasis();
|
||||
|
||||
props = props_;
|
||||
itype = itype_;
|
||||
|
||||
if (ir == NULL)
|
||||
{
|
||||
SetupIntegrationRule();
|
||||
}
|
||||
|
||||
SetupMaps();
|
||||
|
||||
SetProperties(*otrialFESpace,
|
||||
*otestFESpace,
|
||||
*ir,
|
||||
props);
|
||||
|
||||
Setup();
|
||||
}
|
||||
|
||||
OccaGeometry OccaIntegrator::GetGeometry(const int flags)
|
||||
{
|
||||
return OccaGeometry::Get(GetDevice(), *otrialFESpace, *ir, flags);
|
||||
}
|
||||
|
||||
::occa::kernel OccaIntegrator::GetAssembleKernel(const ::occa::properties
|
||||
&props)
|
||||
{
|
||||
const mfem::FiniteElement &fe = *(trialFESpace->GetFE(0));
|
||||
return GetKernel(stringWithDim("Assemble", fe.GetDim()),
|
||||
props);
|
||||
}
|
||||
|
||||
::occa::kernel OccaIntegrator::GetMultAddKernel(const ::occa::properties &props)
|
||||
{
|
||||
const mfem::FiniteElement &fe = *(trialFESpace->GetFE(0));
|
||||
return GetKernel(stringWithDim("MultAdd", fe.GetDim()),
|
||||
props);
|
||||
}
|
||||
|
||||
::occa::kernel OccaIntegrator::GetKernel(const std::string &kernelName,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
const std::string filename = GetName() + ".okl";
|
||||
const std::string &okl_path = OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = OccaEngine().GetOklDefines();
|
||||
return GetDevice().buildKernel(okl_path + filename,
|
||||
kernelName,
|
||||
props + okl_defines);
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Diffusion Integrator ]---------
|
||||
OccaDiffusionIntegrator::OccaDiffusionIntegrator(const OccaCoefficient &coeff_)
|
||||
:
|
||||
OccaIntegrator(coeff_.OccaEngine()),
|
||||
coeff(coeff_),
|
||||
assembledOperator(*(new Layout(coeff_.OccaEngine(), 0)))
|
||||
{
|
||||
coeff.SetName("COEFF");
|
||||
}
|
||||
|
||||
OccaDiffusionIntegrator::~OccaDiffusionIntegrator() {}
|
||||
|
||||
|
||||
std::string OccaDiffusionIntegrator::GetName()
|
||||
{
|
||||
return "DiffusionIntegrator";
|
||||
}
|
||||
|
||||
void OccaDiffusionIntegrator::SetupIntegrationRule()
|
||||
{
|
||||
const FiniteElement &trialFE = *(trialFESpace->GetFE(0));
|
||||
const FiniteElement &testFE = *(testFESpace->GetFE(0));
|
||||
ir = &mfem::DiffusionIntegrator::GetRule(trialFE, testFE);
|
||||
}
|
||||
|
||||
void OccaDiffusionIntegrator::Setup()
|
||||
{
|
||||
::occa::properties kernelProps = props;
|
||||
|
||||
coeff.Setup(*this, kernelProps);
|
||||
|
||||
// Setup assemble and mult kernels
|
||||
assembleKernel = GetAssembleKernel(kernelProps);
|
||||
multKernel = GetMultAddKernel(kernelProps);
|
||||
}
|
||||
|
||||
void OccaDiffusionIntegrator::Assemble()
|
||||
{
|
||||
const mfem::FiniteElement &fe = *(trialFESpace->GetFE(0));
|
||||
|
||||
const int dims = fe.GetDim();
|
||||
const int symmDims = (dims * (dims + 1)) / 2; // 1x1: 1, 2x2: 3, 3x3: 6
|
||||
|
||||
const int elements = trialFESpace->GetNE();
|
||||
const int quadraturePoints = ir->GetNPoints();
|
||||
|
||||
OccaGeometry geom = GetGeometry(OccaGeometry::Jacobian);
|
||||
|
||||
assembledOperator.Resize<double>(symmDims * quadraturePoints * elements,
|
||||
NULL);
|
||||
|
||||
assembleKernel((int) mesh->GetNE(),
|
||||
maps.quadWeights,
|
||||
geom.J,
|
||||
coeff,
|
||||
assembledOperator.OccaMem());
|
||||
}
|
||||
|
||||
void OccaDiffusionIntegrator::MultAdd(Vector &x, Vector &y)
|
||||
{
|
||||
// Note: x and y are E-vectors
|
||||
|
||||
multKernel((int) mesh->GetNE(),
|
||||
maps.dofToQuad,
|
||||
maps.dofToQuadD,
|
||||
maps.quadToDof,
|
||||
maps.quadToDofD,
|
||||
assembledOperator.OccaMem(),
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Mass Integrator ]--------------
|
||||
OccaMassIntegrator::OccaMassIntegrator(const OccaCoefficient &coeff_) :
|
||||
OccaIntegrator(coeff_.OccaEngine()),
|
||||
coeff(coeff_),
|
||||
assembledOperator(*(new Layout(coeff_.OccaEngine(), 0)))
|
||||
{
|
||||
coeff.SetName("COEFF");
|
||||
}
|
||||
|
||||
OccaMassIntegrator::~OccaMassIntegrator() {}
|
||||
|
||||
std::string OccaMassIntegrator::GetName()
|
||||
{
|
||||
return "MassIntegrator";
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::SetupIntegrationRule()
|
||||
{
|
||||
const mfem::FiniteElement &trialFE = *(trialFESpace->GetFE(0));
|
||||
const mfem::FiniteElement &testFE = *(testFESpace->GetFE(0));
|
||||
mfem::ElementTransformation &T = *trialFESpace->GetElementTransformation(0);
|
||||
ir = &mfem::MassIntegrator::GetRule(trialFE, testFE, T);
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::Setup()
|
||||
{
|
||||
::occa::properties kernelProps = props;
|
||||
|
||||
coeff.Setup(*this, kernelProps);
|
||||
|
||||
// Setup assemble and mult kernels
|
||||
assembleKernel = GetAssembleKernel(kernelProps);
|
||||
multKernel = GetMultAddKernel(kernelProps);
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::Assemble()
|
||||
{
|
||||
if (assembledOperator.Size())
|
||||
{
|
||||
return;
|
||||
}
|
||||
|
||||
const int elements = trialFESpace->GetNE();
|
||||
const int quadraturePoints = ir->GetNPoints();
|
||||
|
||||
OccaGeometry geom = GetGeometry(OccaGeometry::Jacobian);
|
||||
|
||||
assembledOperator.Resize<double>(quadraturePoints * elements, NULL);
|
||||
|
||||
assembleKernel((int) mesh->GetNE(),
|
||||
maps.quadWeights,
|
||||
geom.J,
|
||||
coeff,
|
||||
assembledOperator.OccaMem());
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::SetOperator(Vector &v)
|
||||
{
|
||||
assembledOperator = v;
|
||||
}
|
||||
|
||||
void OccaMassIntegrator::MultAdd(Vector &x, Vector &y)
|
||||
{
|
||||
multKernel((int) mesh->GetNE(),
|
||||
maps.dofToQuad,
|
||||
maps.dofToQuadD,
|
||||
maps.quadToDof,
|
||||
maps.quadToDofD,
|
||||
assembledOperator.OccaMem(),
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Vector Mass Integrator ]--------------
|
||||
OccaVectorMassIntegrator::OccaVectorMassIntegrator(const OccaCoefficient &
|
||||
coeff_)
|
||||
:
|
||||
OccaIntegrator(coeff_.OccaEngine()),
|
||||
coeff(coeff_),
|
||||
assembledOperator(*(new Layout(coeff_.OccaEngine(), 0)))
|
||||
{
|
||||
coeff.SetName("COEFF");
|
||||
}
|
||||
|
||||
OccaVectorMassIntegrator::~OccaVectorMassIntegrator() {}
|
||||
|
||||
std::string OccaVectorMassIntegrator::GetName()
|
||||
{
|
||||
return "VectorMassIntegrator";
|
||||
}
|
||||
|
||||
void OccaVectorMassIntegrator::SetupIntegrationRule()
|
||||
{
|
||||
const mfem::FiniteElement &trialFE = *(trialFESpace->GetFE(0));
|
||||
const mfem::FiniteElement &testFE = *(testFESpace->GetFE(0));
|
||||
mfem::ElementTransformation &T = *trialFESpace->GetElementTransformation(0);
|
||||
ir = &mfem::MassIntegrator::GetRule(trialFE, testFE, T);
|
||||
}
|
||||
|
||||
void OccaVectorMassIntegrator::Setup()
|
||||
{
|
||||
::occa::properties kernelProps = props;
|
||||
|
||||
coeff.Setup(*this, kernelProps);
|
||||
|
||||
// Setup assemble and mult kernels
|
||||
assembleKernel = GetAssembleKernel(kernelProps);
|
||||
multKernel = GetMultAddKernel(kernelProps);
|
||||
}
|
||||
|
||||
void OccaVectorMassIntegrator::Assemble()
|
||||
{
|
||||
const int elements = trialFESpace->GetNE();
|
||||
const int quadraturePoints = ir->GetNPoints();
|
||||
|
||||
OccaGeometry geom = GetGeometry(OccaGeometry::Jacobian);
|
||||
|
||||
assembledOperator.Resize<double>(quadraturePoints * elements, NULL);
|
||||
|
||||
assembleKernel((int) mesh->GetNE(),
|
||||
maps.quadWeights,
|
||||
geom.J,
|
||||
coeff,
|
||||
assembledOperator.OccaMem());
|
||||
}
|
||||
|
||||
void OccaVectorMassIntegrator::MultAdd(Vector &x, Vector &y)
|
||||
{
|
||||
multKernel((int) mesh->GetNE(),
|
||||
maps.dofToQuad,
|
||||
maps.dofToQuadD,
|
||||
maps.quadToDof,
|
||||
maps.quadToDofD,
|
||||
assembledOperator.OccaMem(),
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,323 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_BILIN_INTEG_HPP
|
||||
#define MFEM_BACKENDS_OCCA_BILIN_INTEG_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "fespace.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "coefficient.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class OccaGeometry
|
||||
{
|
||||
public:
|
||||
::occa::array<double> meshNodes;
|
||||
::occa::array<double> J, invJ, detJ;
|
||||
|
||||
// byVDIM -> [x y z x y z x y z]
|
||||
// byNodes -> [x x x y y y z z z]
|
||||
static const int Jacobian = (1 << 0);
|
||||
static const int JacobianInv = (1 << 1);
|
||||
static const int JacobianDet = (1 << 2);
|
||||
|
||||
static OccaGeometry Get(::occa::device device,
|
||||
FiniteElementSpace &ofespace,
|
||||
const IntegrationRule &ir,
|
||||
const int flags = (Jacobian |
|
||||
JacobianInv |
|
||||
JacobianDet));
|
||||
};
|
||||
|
||||
class OccaDofQuadMaps
|
||||
{
|
||||
private:
|
||||
// Reuse dof-quad maps
|
||||
static std::map<std::string, OccaDofQuadMaps> AllDofQuadMaps;
|
||||
std::string hash;
|
||||
|
||||
public:
|
||||
// Local stiffness matrices (B and B^T operators)
|
||||
::occa::array<double, ::occa::dynamic> dofToQuad, dofToQuadD; // B
|
||||
::occa::array<double, ::occa::dynamic> quadToDof, quadToDofD; // B^T
|
||||
::occa::array<double> quadWeights;
|
||||
|
||||
OccaDofQuadMaps();
|
||||
OccaDofQuadMaps(const OccaDofQuadMaps &maps);
|
||||
OccaDofQuadMaps& operator = (const OccaDofQuadMaps &maps);
|
||||
|
||||
// [[x y] [x y] [x y]]
|
||||
// [[x y z] [x y z] [x y z]]
|
||||
// mfem::GridFunction* mfem::Mesh::GetNodes() { return Nodes; }
|
||||
|
||||
// mfem::FiniteElementSpace *Nodes->FESpace()
|
||||
// 25
|
||||
// 1D [x x x x x x]
|
||||
// 2D [x y x y x y]
|
||||
// GetVdim()
|
||||
// 3D ordering == byVDIM -> [x y z x y z x y z x y z x y z x y z]
|
||||
// ordering == byNODES -> [x x x x x x y y y y y y z z z z z z]
|
||||
static OccaDofQuadMaps& Get(::occa::device device,
|
||||
const FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& Get(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& Get(::occa::device device,
|
||||
const FiniteElementSpace &trialFESpace,
|
||||
const FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& Get(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& GetTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& GetTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps GetD2QTensorMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& GetSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps& GetSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &trialFE,
|
||||
const mfem::FiniteElement &testFE,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
|
||||
static OccaDofQuadMaps GetD2QSimplexMaps(::occa::device device,
|
||||
const mfem::FiniteElement &fe,
|
||||
const mfem::IntegrationRule &ir,
|
||||
const bool transpose = false);
|
||||
};
|
||||
|
||||
//---[ Define Methods ]---------------
|
||||
std::string stringWithDim(const std::string &s, const int dim);
|
||||
int closestWarpBatch(const int multiple, const int maxSize);
|
||||
|
||||
void SetProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetTensorProperties(FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetTensorProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetSimplexProperties(FiniteElementSpace &fespace,
|
||||
const IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
void SetSimplexProperties(FiniteElementSpace &trialFESpace,
|
||||
FiniteElementSpace &testFESpace,
|
||||
const IntegrationRule &ir,
|
||||
::occa::properties &props);
|
||||
|
||||
//---[ Base Integrator ]--------------
|
||||
class OccaIntegrator
|
||||
{
|
||||
protected:
|
||||
SharedPtr<const Engine> engine;
|
||||
|
||||
OccaBilinearForm *bform;
|
||||
mfem::Mesh *mesh;
|
||||
|
||||
FiniteElementSpace *otrialFESpace;
|
||||
FiniteElementSpace *otestFESpace;
|
||||
|
||||
mfem::FiniteElementSpace *trialFESpace;
|
||||
mfem::FiniteElementSpace *testFESpace;
|
||||
|
||||
::occa::properties props;
|
||||
OccaIntegratorType itype;
|
||||
|
||||
const IntegrationRule *ir;
|
||||
bool hasTensorBasis;
|
||||
OccaDofQuadMaps maps;
|
||||
OccaDofQuadMaps mapsTranspose;
|
||||
|
||||
public:
|
||||
OccaIntegrator(const Engine &e);
|
||||
virtual ~OccaIntegrator();
|
||||
|
||||
const Engine &OccaEngine() const { return *engine; }
|
||||
|
||||
::occa::device GetDevice(int idx = 0) const
|
||||
{ return engine->GetDevice(idx); }
|
||||
|
||||
virtual std::string GetName() = 0;
|
||||
|
||||
FiniteElementSpace& GetTrialOccaFESpace() const;
|
||||
FiniteElementSpace& GetTestOccaFESpace() const;
|
||||
|
||||
mfem::FiniteElementSpace& GetTrialFESpace() const;
|
||||
mfem::FiniteElementSpace& GetTestFESpace() const;
|
||||
|
||||
void SetIntegrationRule(const mfem::IntegrationRule &ir_);
|
||||
const mfem::IntegrationRule& GetIntegrationRule() const;
|
||||
|
||||
OccaDofQuadMaps& GetDofQuadMaps();
|
||||
|
||||
void SetupMaps();
|
||||
|
||||
virtual void SetupIntegrationRule() = 0;
|
||||
|
||||
virtual void SetupIntegrator(OccaBilinearForm &bform_,
|
||||
const ::occa::properties &props_,
|
||||
const OccaIntegratorType itype_);
|
||||
|
||||
virtual void Setup() = 0;
|
||||
|
||||
virtual void Assemble() = 0;
|
||||
/// This method works on E-vectors!
|
||||
virtual void MultAdd(Vector &x, Vector &y) = 0;
|
||||
|
||||
virtual void MultTransposeAdd(Vector &x, Vector &y)
|
||||
{
|
||||
mfem_error("OccaIntegrator::MultTransposeAdd() is not overloaded!");
|
||||
}
|
||||
|
||||
OccaGeometry GetGeometry(const int flags = (OccaGeometry::Jacobian |
|
||||
OccaGeometry::JacobianInv |
|
||||
OccaGeometry::JacobianDet));
|
||||
|
||||
::occa::kernel GetAssembleKernel(const ::occa::properties &props);
|
||||
::occa::kernel GetMultAddKernel(const ::occa::properties &props);
|
||||
|
||||
::occa::kernel GetKernel(const std::string &kernelName,
|
||||
const ::occa::properties &props);
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Diffusion Integrator ]---------
|
||||
class OccaDiffusionIntegrator : public OccaIntegrator
|
||||
{
|
||||
private:
|
||||
OccaCoefficient coeff;
|
||||
|
||||
::occa::kernel assembleKernel, multKernel;
|
||||
|
||||
Vector assembledOperator;
|
||||
|
||||
public:
|
||||
OccaDiffusionIntegrator(const OccaCoefficient &coeff_);
|
||||
virtual ~OccaDiffusionIntegrator();
|
||||
|
||||
virtual std::string GetName();
|
||||
|
||||
virtual void SetupIntegrationRule();
|
||||
|
||||
virtual void Setup();
|
||||
|
||||
virtual void Assemble();
|
||||
virtual void MultAdd(Vector &x, Vector &y);
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Mass Integrator ]--------------
|
||||
class OccaMassIntegrator : public OccaIntegrator
|
||||
{
|
||||
private:
|
||||
OccaCoefficient coeff;
|
||||
|
||||
::occa::kernel assembleKernel, multKernel;
|
||||
|
||||
Vector assembledOperator;
|
||||
|
||||
public:
|
||||
OccaMassIntegrator(const OccaCoefficient &coeff_);
|
||||
virtual ~OccaMassIntegrator();
|
||||
|
||||
virtual std::string GetName();
|
||||
|
||||
virtual void SetupIntegrationRule();
|
||||
|
||||
virtual void Setup();
|
||||
|
||||
virtual void Assemble();
|
||||
void SetOperator(Vector &v);
|
||||
|
||||
virtual void MultAdd(Vector &x, Vector &y);
|
||||
};
|
||||
//====================================
|
||||
|
||||
//---[ Vector Mass Integrator ]--------------
|
||||
class OccaVectorMassIntegrator : public OccaIntegrator
|
||||
{
|
||||
private:
|
||||
OccaCoefficient coeff;
|
||||
|
||||
::occa::kernel assembleKernel, multKernel;
|
||||
|
||||
Vector assembledOperator;
|
||||
|
||||
public:
|
||||
OccaVectorMassIntegrator(const OccaCoefficient &coeff_);
|
||||
virtual ~OccaVectorMassIntegrator();
|
||||
|
||||
virtual std::string GetName();
|
||||
|
||||
virtual void SetupIntegrationRule();
|
||||
|
||||
virtual void Setup();
|
||||
|
||||
virtual void Assemble();
|
||||
|
||||
virtual void MultAdd(Vector &x, Vector &y);
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_BILIN_INTEG_HPP
|
||||
@@ -0,0 +1,344 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "coefficient.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
//---[ Parameter ]------------
|
||||
OccaParameter::~OccaParameter() {}
|
||||
|
||||
void OccaParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props) {}
|
||||
|
||||
::occa::kernelArg OccaParameter::KernelArgs()
|
||||
{
|
||||
return ::occa::kernelArg();
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Include Parameter ]------------
|
||||
OccaIncludeParameter::OccaIncludeParameter(const std::string &filename_) :
|
||||
filename(filename_) {}
|
||||
|
||||
OccaParameter* OccaIncludeParameter::Clone()
|
||||
{
|
||||
return new OccaIncludeParameter(filename);
|
||||
}
|
||||
|
||||
void OccaIncludeParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
props["headers"].asArray() += "#include " + filename;
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Source Parameter ]------------
|
||||
OccaSourceParameter::OccaSourceParameter(const std::string &source_) :
|
||||
source(source_) {}
|
||||
|
||||
OccaParameter* OccaSourceParameter::Clone()
|
||||
{
|
||||
return new OccaSourceParameter(source);
|
||||
}
|
||||
|
||||
void OccaSourceParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
props["headers"].asArray() += source;
|
||||
}
|
||||
//====================================
|
||||
|
||||
//---[ Vector Parameter ]-------
|
||||
OccaVectorParameter::OccaVectorParameter(const std::string &name_,
|
||||
Vector &v_,
|
||||
const bool useRestrict_) :
|
||||
name(name_),
|
||||
v(v_),
|
||||
useRestrict(useRestrict_),
|
||||
attr("") {}
|
||||
|
||||
OccaVectorParameter::OccaVectorParameter(const std::string &name_,
|
||||
Vector &v_,
|
||||
const std::string &attr_,
|
||||
const bool useRestrict_) :
|
||||
name(name_),
|
||||
v(v_),
|
||||
useRestrict(useRestrict_),
|
||||
attr(attr_) {}
|
||||
|
||||
OccaParameter* OccaVectorParameter::Clone()
|
||||
{
|
||||
return new OccaVectorParameter(name, v, attr, useRestrict);
|
||||
}
|
||||
|
||||
void OccaVectorParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
std::string &args = (props["defines/COEFF_ARGS"]
|
||||
.asString()
|
||||
.string());
|
||||
args += "const double *";
|
||||
if (useRestrict)
|
||||
{
|
||||
args += " restrict ";
|
||||
}
|
||||
args += name;
|
||||
if (attr.size())
|
||||
{
|
||||
args += ' ';
|
||||
args += attr;
|
||||
}
|
||||
args += ",\n";
|
||||
}
|
||||
|
||||
::occa::kernelArg OccaVectorParameter::KernelArgs()
|
||||
{
|
||||
return ::occa::kernelArg(v.OccaMem());
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ GridFunction Parameter ]-------
|
||||
OccaGridFunctionParameter::OccaGridFunctionParameter(const std::string &name_,
|
||||
OccaGridFunction &gf_,
|
||||
const bool useRestrict_)
|
||||
: name(name_),
|
||||
gf(gf_),
|
||||
gfQuad(*(new Layout(gf_.OccaLayout().OccaEngine(), 0))),
|
||||
useRestrict(useRestrict_) {}
|
||||
|
||||
OccaParameter* OccaGridFunctionParameter::Clone()
|
||||
{
|
||||
OccaGridFunctionParameter *param =
|
||||
new OccaGridFunctionParameter(name, gf, useRestrict);
|
||||
param->gfQuad.MakeRef(gfQuad);
|
||||
return param;
|
||||
}
|
||||
|
||||
void OccaGridFunctionParameter::Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
|
||||
std::string &args = (props["defines/COEFF_ARGS"]
|
||||
.asString()
|
||||
.string());
|
||||
args += "const double *";
|
||||
if (useRestrict)
|
||||
{
|
||||
args += " restrict ";
|
||||
}
|
||||
args += name;
|
||||
args += " @dim(NUM_QUAD, numElements),\n";
|
||||
|
||||
gf.ToQuad(integ.GetIntegrationRule(), gfQuad);
|
||||
}
|
||||
|
||||
::occa::kernelArg OccaGridFunctionParameter::KernelArgs()
|
||||
{
|
||||
return gfQuad.OccaMem();
|
||||
}
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Coefficient ]------------------
|
||||
OccaCoefficient::OccaCoefficient(const Engine &e, const double value) :
|
||||
engine(&e),
|
||||
integ(NULL),
|
||||
name("COEFF")
|
||||
{
|
||||
coeffValue = value;
|
||||
}
|
||||
|
||||
OccaCoefficient::OccaCoefficient(const Engine &e, const std::string &source) :
|
||||
engine(&e),
|
||||
integ(NULL),
|
||||
name("COEFF")
|
||||
{
|
||||
coeffValue = source;
|
||||
}
|
||||
|
||||
OccaCoefficient::OccaCoefficient(const Engine &e, const char *source) :
|
||||
engine(&e),
|
||||
integ(NULL),
|
||||
name("COEFF")
|
||||
{
|
||||
coeffValue = source;
|
||||
}
|
||||
|
||||
OccaCoefficient::OccaCoefficient(const OccaCoefficient &coeff) :
|
||||
engine(coeff.engine),
|
||||
integ(NULL),
|
||||
name(coeff.name),
|
||||
coeffValue(coeff.coeffValue)
|
||||
{
|
||||
|
||||
const int paramCount = (int) coeff.params.size();
|
||||
for (int i = 0; i < paramCount; ++i)
|
||||
{
|
||||
params.push_back(coeff.params[i]->Clone());
|
||||
}
|
||||
}
|
||||
|
||||
OccaCoefficient::~OccaCoefficient()
|
||||
{
|
||||
const int paramCount = (int) params.size();
|
||||
for (int i = 0; i < paramCount; ++i)
|
||||
{
|
||||
delete params[i];
|
||||
}
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::SetName(const std::string &name_)
|
||||
{
|
||||
name = name_;
|
||||
return *this;
|
||||
}
|
||||
|
||||
void OccaCoefficient::Setup(OccaIntegrator &integ_,
|
||||
::occa::properties &props_)
|
||||
{
|
||||
integ = &integ_;
|
||||
|
||||
const int paramCount = (int) params.size();
|
||||
props_["defines"][name + "_ARGS"] = "";
|
||||
for (int i = 0; i < paramCount; ++i)
|
||||
{
|
||||
params[i]->Setup(integ_, props_);
|
||||
}
|
||||
props_["defines"][name] = coeffValue;
|
||||
|
||||
props = props_;
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::Add(OccaParameter *param)
|
||||
{
|
||||
params.push_back(param);
|
||||
return *this;
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::IncludeHeader(const std::string &filename)
|
||||
{
|
||||
return Add(new OccaIncludeParameter(filename));
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::IncludeSource(const std::string &source)
|
||||
{
|
||||
return Add(new OccaSourceParameter(source));
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::AddVector(const std::string &name_,
|
||||
Vector &v,
|
||||
const bool useRestrict)
|
||||
{
|
||||
return Add(new OccaVectorParameter(name_, v, useRestrict));
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::AddVector(const std::string &name_,
|
||||
Vector &v,
|
||||
const std::string &attr,
|
||||
const bool useRestrict)
|
||||
{
|
||||
return Add(new OccaVectorParameter(name_, v, attr, useRestrict));
|
||||
}
|
||||
|
||||
OccaCoefficient& OccaCoefficient::AddGridFunction(const std::string &name_,
|
||||
OccaGridFunction &gf,
|
||||
const bool useRestrict)
|
||||
{
|
||||
return Add(new OccaGridFunctionParameter(name_, gf, useRestrict));
|
||||
}
|
||||
|
||||
bool OccaCoefficient::IsConstant()
|
||||
{
|
||||
return coeffValue.isNumber();
|
||||
}
|
||||
|
||||
double OccaCoefficient::GetConstantValue()
|
||||
{
|
||||
if (!IsConstant())
|
||||
{
|
||||
mfem_error("OccaCoefficient is not constant");
|
||||
}
|
||||
return coeffValue.number();
|
||||
}
|
||||
|
||||
Vector OccaCoefficient::Eval()
|
||||
{
|
||||
if (integ == NULL)
|
||||
{
|
||||
mfem_error("OccaCoefficient requires a Setup() call before Eval()");
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace &fespace = integ->GetTrialFESpace();
|
||||
const mfem::IntegrationRule &ir = integ->GetIntegrationRule();
|
||||
|
||||
const int elements = fespace.GetNE();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
Vector quadCoeff(*(new Layout(OccaEngine(), numQuad * elements)));
|
||||
Eval(quadCoeff);
|
||||
return quadCoeff;
|
||||
}
|
||||
|
||||
void OccaCoefficient::Eval(Vector &quadCoeff)
|
||||
{
|
||||
const std::string &okl_path = OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = OccaEngine().GetOklDefines();
|
||||
static ::occa::kernelBuilder builder =
|
||||
::occa::kernelBuilder::fromFile(okl_path + "coefficient.okl",
|
||||
"CoefficientEval", okl_defines);
|
||||
|
||||
if (integ == NULL)
|
||||
{
|
||||
mfem_error("OccaCoefficient requires a Setup() call before Eval()");
|
||||
}
|
||||
|
||||
const int elements = integ->GetTrialFESpace().GetNE();
|
||||
|
||||
::occa::properties kernelProps = props;
|
||||
if (name != "COEFF")
|
||||
{
|
||||
kernelProps["defines/COEFF"] = name;
|
||||
kernelProps["defines/COEFF_ARGS"] = name + "_ARGS";
|
||||
}
|
||||
kernelProps += okl_defines;
|
||||
|
||||
::occa::kernel evalKernel = builder.build(GetDevice(), kernelProps);
|
||||
evalKernel(elements, *this, quadCoeff.OccaMem());
|
||||
}
|
||||
|
||||
OccaCoefficient::operator ::occa::kernelArg ()
|
||||
{
|
||||
::occa::kernelArg kArg;
|
||||
const int paramCount = (int) params.size();
|
||||
for (int i = 0; i < paramCount; ++i)
|
||||
{
|
||||
kArg.add(params[i]->KernelArgs());
|
||||
}
|
||||
return kArg;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,284 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_COEFFICIENT_HPP
|
||||
#define MFEM_BACKENDS_OCCA_COEFFICIENT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "gridfunc.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class OccaIntegrator;
|
||||
|
||||
|
||||
class OccaParameter
|
||||
{
|
||||
public:
|
||||
virtual ~OccaParameter();
|
||||
|
||||
virtual OccaParameter* Clone() = 0;
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
|
||||
virtual ::occa::kernelArg KernelArgs();
|
||||
};
|
||||
|
||||
|
||||
//---[ Include Parameter ]------------
|
||||
class OccaIncludeParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
std::string filename;
|
||||
|
||||
public:
|
||||
OccaIncludeParameter(const std::string &filename_);
|
||||
|
||||
virtual OccaParameter* Clone();
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Source Parameter ]------------
|
||||
class OccaSourceParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
std::string source;
|
||||
|
||||
public:
|
||||
OccaSourceParameter(const std::string &filename_);
|
||||
|
||||
virtual OccaParameter* Clone();
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Define Parameter ]------------
|
||||
template <class TM>
|
||||
class OccaDefineParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
const std::string name;
|
||||
TM value;
|
||||
|
||||
public:
|
||||
OccaDefineParameter(const std::string &name_,
|
||||
const TM &value_) :
|
||||
name(name_),
|
||||
value(value_) {}
|
||||
|
||||
virtual OccaParameter* Clone()
|
||||
{
|
||||
return new OccaDefineParameter(name, value);
|
||||
}
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
props["defines"][name] = value;
|
||||
}
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Variable Parameter ]-----------
|
||||
template <class TM>
|
||||
class OccaVariableParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
const std::string name;
|
||||
const TM &value;
|
||||
|
||||
public:
|
||||
OccaVariableParameter(const std::string &name_,
|
||||
const TM &value_) :
|
||||
name(name_),
|
||||
value(value_) {}
|
||||
|
||||
virtual OccaParameter* Clone()
|
||||
{
|
||||
return new OccaVariableParameter(name, value);
|
||||
}
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props)
|
||||
{
|
||||
std::string &args = (props["defines/COEFF_ARGS"]
|
||||
.asString()
|
||||
.string());
|
||||
// const TM name,\n"
|
||||
args += "const ";
|
||||
args += ::occa::primitiveinfo<TM>::name;
|
||||
args += ' ';
|
||||
args += name;
|
||||
args += ",\n";
|
||||
}
|
||||
|
||||
virtual ::occa::kernelArg KernelArgs()
|
||||
{
|
||||
return ::occa::kernelArg(value);
|
||||
}
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Vector Parameter ]-------
|
||||
class OccaVectorParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
const std::string name;
|
||||
Vector v;
|
||||
bool useRestrict;
|
||||
std::string attr;
|
||||
|
||||
public:
|
||||
OccaVectorParameter(const std::string &name_,
|
||||
Vector &v_,
|
||||
const bool useRestrict_ = false);
|
||||
|
||||
OccaVectorParameter(const std::string &name_,
|
||||
Vector &v_,
|
||||
const std::string &attr_,
|
||||
const bool useRestrict_ = false);
|
||||
|
||||
virtual OccaParameter* Clone();
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
|
||||
virtual ::occa::kernelArg KernelArgs();
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ GridFunction Parameter ]-------
|
||||
class OccaGridFunctionParameter : public OccaParameter
|
||||
{
|
||||
private:
|
||||
const std::string name;
|
||||
OccaGridFunction &gf;
|
||||
Vector gfQuad;
|
||||
bool useRestrict;
|
||||
|
||||
public:
|
||||
OccaGridFunctionParameter(const std::string &name_,
|
||||
OccaGridFunction &gf_,
|
||||
const bool useRestrict_ = false);
|
||||
|
||||
virtual OccaParameter* Clone();
|
||||
|
||||
virtual void Setup(OccaIntegrator &integ,
|
||||
::occa::properties &props);
|
||||
|
||||
virtual ::occa::kernelArg KernelArgs();
|
||||
};
|
||||
//====================================
|
||||
|
||||
|
||||
//---[ Coefficient ]------------------
|
||||
// [MISSING]
|
||||
// Needs to know about the integrator's
|
||||
// - fespace
|
||||
// - ir
|
||||
// Step where parameters that need the ir get called for setup
|
||||
// For example, GridFunction (d, e) -> (q, e)
|
||||
class OccaCoefficient
|
||||
{
|
||||
private:
|
||||
SharedPtr<const Engine> engine;
|
||||
|
||||
OccaIntegrator *integ;
|
||||
|
||||
std::string name;
|
||||
::occa::json coeffValue;
|
||||
|
||||
::occa::properties props;
|
||||
std::vector<OccaParameter*> params;
|
||||
|
||||
public:
|
||||
OccaCoefficient(const Engine &e, const double value = 1.0);
|
||||
OccaCoefficient(const Engine &e, const std::string &source);
|
||||
OccaCoefficient(const Engine &e, const char *source);
|
||||
~OccaCoefficient();
|
||||
|
||||
OccaCoefficient(const OccaCoefficient &coeff);
|
||||
|
||||
const Engine &OccaEngine() const { return *engine; }
|
||||
|
||||
::occa::device GetDevice(int idx = 0) const
|
||||
{ return engine->GetDevice(idx); }
|
||||
|
||||
OccaCoefficient& SetName(const std::string &name_);
|
||||
|
||||
void Setup(OccaIntegrator &integ_,
|
||||
::occa::properties &props_);
|
||||
|
||||
OccaCoefficient& Add(OccaParameter *param);
|
||||
|
||||
OccaCoefficient& IncludeHeader(const std::string &filename);
|
||||
OccaCoefficient& IncludeSource(const std::string &source);
|
||||
|
||||
template <class TM>
|
||||
OccaCoefficient& AddDefine(const std::string &name_, const TM &value)
|
||||
{
|
||||
return Add(new OccaDefineParameter<TM>(name_, value));
|
||||
}
|
||||
|
||||
template <class TM>
|
||||
OccaCoefficient& AddVariable(const std::string &name_, const TM &value)
|
||||
{
|
||||
return Add(new OccaVariableParameter<TM>(name_, value));
|
||||
}
|
||||
|
||||
OccaCoefficient& AddVector(const std::string &name_,
|
||||
Vector &v,
|
||||
const bool useRestrict = false);
|
||||
|
||||
|
||||
OccaCoefficient& AddVector(const std::string &name_,
|
||||
Vector &v,
|
||||
const std::string &attr,
|
||||
const bool useRestrict = false);
|
||||
|
||||
OccaCoefficient& AddGridFunction(const std::string &name_,
|
||||
OccaGridFunction &gf,
|
||||
const bool useRestrict = false);
|
||||
|
||||
bool IsConstant();
|
||||
double GetConstantValue();
|
||||
|
||||
Vector Eval();
|
||||
void Eval(Vector &quadCoeff);
|
||||
|
||||
operator ::occa::kernelArg ();
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_COEFFICIENT_HPP
|
||||
@@ -0,0 +1,40 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_OCCA_DEFINES
|
||||
#define MFEM_OCCA_DEFINES
|
||||
|
||||
#ifndef USING_TENSOR_OPS
|
||||
# define USING_TENSOR_OPS 0
|
||||
#endif
|
||||
|
||||
#ifdef OCCA_USING_GPU
|
||||
# define GPU_ORDER_2(I0, I1) @dimOrder(I0, I1)
|
||||
# define GPU_ORDER_3(I0, I1, I2) @dimOrder(I0, I1, I2)
|
||||
# define GPU_ORDER_4(I0, I1, I2, I3) @dimOrder(I0, I1, I2, I3)
|
||||
#else
|
||||
# define GPU_ORDER_2(I0, I1) @dimOrder(0, 1)
|
||||
# define GPU_ORDER_3(I0, I1, I2) @dimOrder(0, 1, 2)
|
||||
# define GPU_ORDER_4(I0, I1, I2, I3) @dimOrder(0, 1, 2, 3)
|
||||
#endif
|
||||
|
||||
#ifndef COEFF
|
||||
# define COEFF 1.0
|
||||
# define COEFF_ARGS
|
||||
#endif
|
||||
|
||||
#if USING_TENSOR_OPS
|
||||
# include "mfem-occa://defines/tensor.okl"
|
||||
#else
|
||||
# include "mfem-occa://defines/simplex.okl"
|
||||
#endif
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,40 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#define USING_LOW_ORDER 1
|
||||
#define USING_HI_ORDER 0
|
||||
|
||||
typedef double* DofToQuad_t @dim(NUM_QUAD, NUM_DOFS);
|
||||
typedef double* DofToQuadD2D_t @dim(2, NUM_QUAD, NUM_DOFS);
|
||||
typedef double* DofToQuadD3D_t @dim(3, NUM_QUAD, NUM_DOFS);
|
||||
|
||||
typedef double* QuadToDof_t @dim(NUM_DOFS, NUM_QUAD);
|
||||
typedef double* QuadToDofD2D_t @dim(2, NUM_DOFS, NUM_QUAD);
|
||||
typedef double* QuadToDofD3D_t @dim(3, NUM_DOFS, NUM_QUAD);
|
||||
|
||||
typedef double* Jacobian2D_t @dim(2, 2, NUM_QUAD, numElements);
|
||||
typedef double* Jacobian3D_t @dim(3, 3, NUM_QUAD, numElements);
|
||||
|
||||
typedef double* SymmOperator2D_t @dim(3, NUM_QUAD, numElements);
|
||||
typedef double* SymmOperator3D_t @dim(6, NUM_QUAD, numElements);
|
||||
|
||||
typedef double* DLocal_t @dim(NUM_DOFS, numElements);
|
||||
typedef double* QLocal_t @dim(NUM_QUAD, numElements);
|
||||
|
||||
#if VDIM_ORDERING == ORDERING_BY_VDIM
|
||||
typedef double* DVLocal_t @dim(NUM_VDIM, NUM_DOFS, numElements);
|
||||
typedef double* QVLocal_t @dim(NUM_VDIM, NUM_QUAD, numElements);
|
||||
#else
|
||||
typedef double* DVLocal_t @dim(NUM_VDIM, NUM_DOFS, numElements) @dimOrder(2,0,1);
|
||||
typedef double* QVLocal_t @dim(NUM_VDIM, NUM_QUAD, numElements) @dimOrder(2,0,1);
|
||||
#endif
|
||||
|
||||
typedef int* DLocalMap_t @dim(NUM_DOFS, numElements);
|
||||
@@ -0,0 +1,85 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#if NUM_QUAD_1D < NUM_DOFS_1D
|
||||
# define NUM_MAX_1D NUM_DOFS_1D
|
||||
#else
|
||||
# define NUM_MAX_1D NUM_QUAD_1D
|
||||
#endif
|
||||
|
||||
#define NUM_MAX_2D (NUM_MAX_1D * NUM_MAX_1D)
|
||||
|
||||
#define NUM_QUAD_DOFS_1D (NUM_QUAD_1D * NUM_DOFS_1D)
|
||||
|
||||
#define QUAD_2D_ID(X, Y) (X + ((Y) * NUM_QUAD_1D))
|
||||
#define DOFS_2D_ID(X, Y) (X + ((Y) * NUM_DOFS_1D))
|
||||
|
||||
#define QUAD_3D_ID(X, Y, Z) (X + ((Y) * NUM_QUAD_1D) + ((Z) * NUM_QUAD_2D))
|
||||
#define DOFS_3D_ID(X, Y, Z) (X + ((Y) * NUM_DOFS_1D) + ((Z) * NUM_DOFS_2D))
|
||||
|
||||
#if NUM_MAX_1D < 8
|
||||
# define USING_LOW_ORDER 1
|
||||
# define USING_HI_ORDER 0
|
||||
#else
|
||||
# define USING_LOW_ORDER 0
|
||||
# define USING_HI_ORDER 1
|
||||
#endif
|
||||
|
||||
#define M1_ELEMENT_BATCHES (M1_OUTER_ELEMENT_BATCH * M1_INNER_ELEMENT_BATCH)
|
||||
|
||||
typedef double* DofToQuad_t @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
typedef double* QuadToDof_t @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
typedef double* Jacobian_t @dim(NUM_DIM, NUM_DIM, numElements);
|
||||
typedef double* Jacobian1D_t @dim(NUM_QUAD_1D, numElements);
|
||||
typedef double* Jacobian2D_t @dim(2, 2, NUM_QUAD_2D, numElements);
|
||||
typedef double* Jacobian3D_t @dim(3, 3, NUM_QUAD_3D, numElements);
|
||||
|
||||
typedef double* SymmOperator1D_t @dim(NUM_QUAD_1D, numElements);
|
||||
typedef double* SymmOperator2D_t @dim(3, NUM_QUAD_2D, numElements);
|
||||
typedef double* SymmOperator3D_t @dim(6, NUM_QUAD_3D, numElements);
|
||||
|
||||
typedef double* DLocal_t @dim(NUM_DOFS, numElements);
|
||||
typedef double* DLocal1D_t @dim(NUM_DOFS_1D, numElements);
|
||||
typedef double* DLocal2D_t @dim(NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
typedef double* DLocal3D_t @dim(NUM_DOFS_1D, NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
|
||||
typedef double* QLocal_t @dim(NUM_QUAD, numElements);
|
||||
typedef double* QLocal1D_t @dim(NUM_QUAD_1D, numElements);
|
||||
typedef double* QLocal2D_t @dim(NUM_QUAD_1D, NUM_QUAD_1D, numElements);
|
||||
typedef double* QLocal3D_t @dim(NUM_QUAD_1D, NUM_QUAD_1D, NUM_QUAD_1D, numElements);
|
||||
|
||||
#if VDIM_ORDERING == ORDERING_BY_VDIM
|
||||
typedef double* DVLocal_t @dim(NUM_VDIM, NUM_DOFS, numElements);
|
||||
typedef double* DVLocal1D_t @dim(NUM_VDIM, NUM_DOFS_1D, numElements);
|
||||
typedef double* DVLocal2D_t @dim(NUM_VDIM, NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
typedef double* DVLocal3D_t @dim(NUM_VDIM, NUM_DOFS_1D, NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
|
||||
typedef double* QVLocal_t @dim(NUM_VDIM, NUM_QUAD, numElements);
|
||||
typedef double* QVLocal1D_t @dim(NUM_VDIM, NUM_QUAD_1D, numElements);
|
||||
typedef double* QVLocal2D_t @dim(NUM_VDIM, NUM_QUAD_1D, NUM_QUAD_1D, numElements);
|
||||
typedef double* QVLocal3D_t @dim(NUM_VDIM, NUM_QUAD_1D, NUM_QUAD_1D, NUM_QUAD_1D, numElements);
|
||||
#else
|
||||
typedef double* DVLocal_t @dim(NUM_VDIM, NUM_DOFS, numElements) @dimOrder(2,0,1);
|
||||
typedef double* DVLocal1D_t @dim(NUM_VDIM, NUM_DOFS_1D, numElements) @dimOrder(2,0,1);
|
||||
typedef double* DVLocal2D_t @dim(NUM_VDIM, NUM_DOFS_1D, NUM_DOFS_1D, numElements) @dimOrder(3,0,1,2);
|
||||
typedef double* DVLocal3D_t @dim(NUM_VDIM, NUM_DOFS_1D, NUM_DOFS_1D, NUM_DOFS_1D, numElements) @dimOrder(4,0,1,2,3);
|
||||
|
||||
typedef double* QVLocal_t @dim(NUM_VDIM, NUM_QUAD, numElements) @dimOrder(2,0,1);
|
||||
typedef double* QVLocal1D_t @dim(NUM_VDIM, NUM_QUAD_1D, numElements) @dimOrder(2,0,1);
|
||||
typedef double* QVLocal2D_t @dim(NUM_VDIM, NUM_QUAD_1D, NUM_QUAD_1D, numElements) @dimOrder(3,0,1,2);
|
||||
typedef double* QVLocal3D_t @dim(NUM_VDIM, NUM_QUAD_1D, NUM_QUAD_1D, NUM_QUAD_1D, numElements) @dimOrder(4,0,1,2,3);
|
||||
#endif
|
||||
|
||||
typedef int* DLocalMap_t @dim(NUM_DOFS, numElements);
|
||||
typedef int* DLocalMap1D_t @dim(NUM_DOFS_1D, numElements);
|
||||
typedef int* DLocalMap2D_t @dim(NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
typedef int* DLocalMap3D_t @dim(NUM_DOFS_1D, NUM_DOFS_1D, NUM_DOFS_1D, numElements);
|
||||
@@ -0,0 +1,168 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
const double * restrict quadWeights,
|
||||
const Jacobian2D_t restrict J,
|
||||
COEFF_ARGS
|
||||
SymmOperator2D_t restrict oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / ((J11 * J22) - (J21 * J12));
|
||||
|
||||
oper(0, q, e) = c_detJ * (J12*J12 + J22*J22); // (1,1)
|
||||
oper(1, q, e) = -c_detJ * (J12*J11 + J22*J21); // (1,2) + (2,1)
|
||||
oper(2, q, e) = c_detJ * (J11*J11 + J21*J21); // (2,2)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuadD2D_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDofD2D_t restrict quadToDofD,
|
||||
const SymmOperator2D_t restrict oper,
|
||||
const DLocal_t restrict solIn,
|
||||
DLocal_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double r_sol[NUM_DOFS];
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] = 0;
|
||||
}
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
double gradX = 0, gradY = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double s = solIn(d, e);
|
||||
gradX += s * quadToDofD(0, d, q);
|
||||
gradY += s * quadToDofD(1, d, q);
|
||||
}
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O22 = oper(2, q, e);
|
||||
|
||||
const double gradX2 = (O11 * gradX) + (O12 * gradY);
|
||||
const double gradY2 = (O12 * gradX) + (O22 * gradY);
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] += ((gradX2 * quadToDofD(0, d, q)) +
|
||||
(gradY2 * quadToDofD(1, d, q)));
|
||||
}
|
||||
}
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
solOut(d, e) += r_sol[d];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
const double * restrict quadWeights,
|
||||
const Jacobian3D_t restrict J,
|
||||
COEFF_ARGS
|
||||
SymmOperator3D_t restrict oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / detJ;
|
||||
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J23 * J31) - (J21 * J33);
|
||||
const double A13 = (J21 * J32) - (J22 * J31);
|
||||
|
||||
const double A21 = (J13 * J32) - (J12 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J12 * J31) - (J11 * J32);
|
||||
|
||||
const double A31 = (J12 * J23) - (J13 * J22);
|
||||
const double A32 = (J13 * J21) - (J11 * J23);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
// adj(J)^Tadj(J)
|
||||
oper(0, q, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
oper(1, q, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2) + (2,1)
|
||||
oper(2, q, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3) + (3,1)
|
||||
oper(3, q, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
oper(4, q, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3) + (3,2)
|
||||
oper(5, q, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuadD3D_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDofD3D_t restrict quadToDofD,
|
||||
const SymmOperator3D_t restrict oper,
|
||||
const DLocal_t restrict solIn,
|
||||
DLocal_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double r_sol[NUM_DOFS];
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] = 0;
|
||||
}
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
double gradX = 0, gradY = 0, gradZ = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double s = solIn(d, e);
|
||||
gradX += s * quadToDofD(0, d, q);
|
||||
gradY += s * quadToDofD(1, d, q);
|
||||
gradZ += s * quadToDofD(2, d, q);
|
||||
}
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O13 = oper(2, q, e);
|
||||
const double O22 = oper(3, q, e);
|
||||
const double O23 = oper(4, q, e);
|
||||
const double O33 = oper(5, q, e);
|
||||
|
||||
const double gradX2 = (O11 * gradX) + (O12 * gradY) + (O13 * gradZ);
|
||||
const double gradY2 = (O12 * gradX) + (O22 * gradY) + (O23 * gradZ);
|
||||
const double gradZ2 = (O13 * gradX) + (O23 * gradY) + (O33 * gradZ);
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_sol[d] += ((gradX2 * quadToDofD(0, d, q)) +
|
||||
(gradY2 * quadToDofD(1, d, q)) +
|
||||
(gradZ2 * quadToDofD(2, d, q)));
|
||||
}
|
||||
}
|
||||
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
solOut(d, e) += r_sol[d];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,182 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian2D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator2D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A2_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A2_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A2_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += A2_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / ((J11 * J22) - (J21 * J12));
|
||||
|
||||
oper(0, q, e) = c_detJ * (J12*J12 + J22*J22); // (1,1)
|
||||
oper(1, q, e) = -c_detJ * (J12*J11 + J22*J21); // (1,2) + (2,1)
|
||||
oper(2, q, e) = c_detJ * (J11*J11 + J21*J21); // (2,2)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuadD2D_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDofD2D_t restrict quadToDofD,
|
||||
const SymmOperator2D_t restrict oper,
|
||||
const DLocal_t restrict solIn,
|
||||
DLocal_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_gradX[NUM_QUAD];
|
||||
@shared double s_gradY[NUM_QUAD];
|
||||
|
||||
for (int qOff = 0; qOff < M2_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M2_INNER_BATCH) {
|
||||
double gradX = 0, gradY = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double s = solIn(d, e);
|
||||
gradX += s * quadToDofD(0, d, q);
|
||||
gradY += s * quadToDofD(1, d, q);
|
||||
}
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O22 = oper(2, q, e);
|
||||
|
||||
s_gradX[q] = (O11 * gradX) + (O12 * gradY);
|
||||
s_gradY[q] = (O12 * gradX) + (O22 * gradY);
|
||||
}
|
||||
}
|
||||
|
||||
for (int dOff = 0; dOff < M2_INNER_BATCH; ++dOff) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M2_INNER_BATCH) {
|
||||
double r_sol = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
// FIXME: s_gradX and s_gradY are @shared used outside of @inner
|
||||
r_sol += ((s_gradX[q] * quadToDofD(0, d, q)) +
|
||||
(s_gradY[q] * quadToDofD(1, d, q)));
|
||||
}
|
||||
solOut(d, e) += r_sol;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian3D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator3D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A3_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A3_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A3_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += A3_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / detJ;
|
||||
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J23 * J31) - (J21 * J33);
|
||||
const double A13 = (J21 * J32) - (J22 * J31);
|
||||
|
||||
const double A21 = (J13 * J32) - (J12 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J12 * J31) - (J11 * J32);
|
||||
|
||||
const double A31 = (J12 * J23) - (J13 * J22);
|
||||
const double A32 = (J13 * J21) - (J11 * J23);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
// adj(J)^Tadj(J)
|
||||
oper(0, q, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
oper(1, q, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2) + (2,1)
|
||||
oper(2, q, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3) + (3,1)
|
||||
oper(3, q, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
oper(4, q, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3) + (3,2)
|
||||
oper(5, q, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuadD3D_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDofD3D_t restrict quadToDofD,
|
||||
const SymmOperator3D_t restrict oper,
|
||||
const DLocal_t restrict solIn,
|
||||
DLocal_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_gradX[NUM_QUAD];
|
||||
@shared double s_gradY[NUM_QUAD];
|
||||
@shared double s_gradZ[NUM_QUAD];
|
||||
|
||||
for (int qOff = 0; qOff < M3_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M3_INNER_BATCH) {
|
||||
double gradX = 0, gradY = 0, gradZ = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double s = solIn(d, e);
|
||||
gradX += s * quadToDofD(0, d, q);
|
||||
gradY += s * quadToDofD(1, d, q);
|
||||
gradZ += s * quadToDofD(2, d, q);
|
||||
}
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O13 = oper(2, q, e);
|
||||
const double O22 = oper(3, q, e);
|
||||
const double O23 = oper(4, q, e);
|
||||
const double O33 = oper(5, q, e);
|
||||
|
||||
s_gradX[q] = (O11 * gradX) + (O12 * gradY) + (O13 * gradZ);
|
||||
s_gradY[q] = (O12 * gradX) + (O22 * gradY) + (O23 * gradZ);
|
||||
s_gradZ[q] = (O13 * gradX) + (O23 * gradY) + (O33 * gradZ);
|
||||
}
|
||||
}
|
||||
|
||||
for (int dOff = 0; dOff < M3_INNER_BATCH; ++dOff) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M3_INNER_BATCH) {
|
||||
double r_sol = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
r_sol += ((s_gradX[q] * quadToDofD(0, d, q)) +
|
||||
(s_gradY[q] * quadToDofD(1, d, q)) +
|
||||
(s_gradZ[q] * quadToDofD(2, d, q)));
|
||||
}
|
||||
solOut(d, e) += r_sol;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,370 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void Assemble1D(const int numElements,
|
||||
const double * restrict quadWeights,
|
||||
const Jacobian1D_t restrict J,
|
||||
COEFF_ARGS
|
||||
SymmOperator1D_t restrict oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD_1D; ++q; @inner) {
|
||||
oper(q, e) = quadWeights[q] * COEFF / J(q, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd1D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuad_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDof_t restrict quadToDofD,
|
||||
const SymmOperator1D_t restrict oper,
|
||||
const DLocal1D_t restrict solIn,
|
||||
DLocal1D_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double grad[NUM_QUAD_1D];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] = 0;
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] += s * dofToQuadD(qx, dx);
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] *= oper(qx, e);
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double gradX = grad[qx];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
solOut(dx, e) += gradX * quadToDofD(dx, qx);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
const double * restrict quadWeights,
|
||||
const Jacobian2D_t restrict J,
|
||||
COEFF_ARGS
|
||||
SymmOperator2D_t restrict oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD_2D; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / ((J11 * J22) - (J21 * J12));
|
||||
|
||||
oper(0, q, e) = c_detJ * (J21*J21 + J22*J22); // (1,1)
|
||||
oper(1, q, e) = -c_detJ * (J21*J11 + J22*J12); // (1,2), (2,1)
|
||||
oper(2, q, e) = c_detJ * (J11*J11 + J12*J12); // (2,2)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuad_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDof_t restrict quadToDofD,
|
||||
const SymmOperator2D_t restrict oper,
|
||||
const DLocal2D_t restrict solIn,
|
||||
DLocal2D_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double grad[NUM_QUAD_1D][NUM_QUAD_1D][2];
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qy][qx][0] = 0;
|
||||
grad[qy][qx][1] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double gradX[NUM_QUAD_1D][2];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradX[qx][0] = 0;
|
||||
gradX[qx][1] = 0;
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, dy, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradX[qx][0] += s * dofToQuad(qx, dx);
|
||||
gradX[qx][1] += s * dofToQuadD(qx, dx);
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = dofToQuad(qy, dy);
|
||||
const double wDy = dofToQuadD(qy, dy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qy][qx][0] += gradX[qx][1] * wy;
|
||||
grad[qy][qx][1] += gradX[qx][0] * wDy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Calculate Dxy, xDy in plane
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const int q = QUAD_2D_ID(qx, qy);
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O22 = oper(2, q, e);
|
||||
|
||||
const double gradX = grad[qy][qx][0];
|
||||
const double gradY = grad[qy][qx][1];
|
||||
|
||||
grad[qy][qx][0] = (O11 * gradX) + (O12 * gradY);
|
||||
grad[qy][qx][1] = (O12 * gradX) + (O22 * gradY);
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double gradX[NUM_DOFS_1D][2];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradX[dx][0] = 0;
|
||||
gradX[dx][1] = 0;
|
||||
}
|
||||
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double gX = grad[qy][qx][0];
|
||||
const double gY = grad[qy][qx][1];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double wx = quadToDof(dx, qx);
|
||||
const double wDx = quadToDofD(dx, qx);
|
||||
gradX[dx][0] += gX * wDx;
|
||||
gradX[dx][1] += gY * wx;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = quadToDof(dy, qy);
|
||||
const double wDy = quadToDofD(dy, qy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
solOut(dx, dy, e) += ((gradX[dx][0] * wy) +
|
||||
(gradX[dx][1] * wDy));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
const double * restrict quadWeights,
|
||||
const Jacobian3D_t restrict J,
|
||||
COEFF_ARGS
|
||||
SymmOperator3D_t restrict oper) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int q = 0; q < NUM_QUAD_3D; ++q; @inner) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / detJ;
|
||||
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J23 * J31) - (J21 * J33);
|
||||
const double A13 = (J21 * J32) - (J22 * J31);
|
||||
|
||||
const double A21 = (J13 * J32) - (J12 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J12 * J31) - (J11 * J32);
|
||||
|
||||
const double A31 = (J12 * J23) - (J13 * J22);
|
||||
const double A32 = (J13 * J21) - (J11 * J23);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
// adj(J)^Tadj(J)
|
||||
oper(0, q, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
oper(1, q, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2), (2,1)
|
||||
oper(2, q, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3), (3,1)
|
||||
oper(3, q, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
oper(4, q, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3), (3,2)
|
||||
oper(5, q, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuad_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDof_t restrict quadToDofD,
|
||||
const SymmOperator3D_t restrict oper,
|
||||
const DLocal3D_t restrict solIn,
|
||||
DLocal3D_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double grad[NUM_QUAD_1D][NUM_QUAD_1D][NUM_QUAD_1D][4];
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qz][qy][qx][0] = 0;
|
||||
grad[qz][qy][qx][1] = 0;
|
||||
grad[qz][qy][qx][2] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
double gradXY[NUM_QUAD_1D][NUM_QUAD_1D][4];
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradXY[qy][qx][0] = 0;
|
||||
gradXY[qy][qx][1] = 0;
|
||||
gradXY[qy][qx][2] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double gradX[NUM_QUAD_1D][2];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradX[qx][0] = 0;
|
||||
gradX[qx][1] = 0;
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, dy, dz, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
gradX[qx][0] += s * dofToQuad(qx, dx);
|
||||
gradX[qx][1] += s * dofToQuadD(qx, dx);
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = dofToQuad(qy, dy);
|
||||
const double wDy = dofToQuadD(qy, dy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double wx = gradX[qx][0];
|
||||
const double wDx = gradX[qx][1];
|
||||
gradXY[qy][qx][0] += wDx * wy;
|
||||
gradXY[qy][qx][1] += wx * wDy;
|
||||
gradXY[qy][qx][2] += wx * wy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
const double wz = dofToQuad(qz, dz);
|
||||
const double wDz = dofToQuadD(qz, dz);
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qz][qy][qx][0] += gradXY[qy][qx][0] * wz;
|
||||
grad[qz][qy][qx][1] += gradXY[qy][qx][1] * wz;
|
||||
grad[qz][qy][qx][2] += gradXY[qy][qx][2] * wDz;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Calculate Dxyz, xDyz, xyDz in plane
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const int q = QUAD_3D_ID(qx, qy, qz);
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O13 = oper(2, q, e);
|
||||
const double O22 = oper(3, q, e);
|
||||
const double O23 = oper(4, q, e);
|
||||
const double O33 = oper(5, q, e);
|
||||
|
||||
const double gradX = grad[qz][qy][qx][0];
|
||||
const double gradY = grad[qz][qy][qx][1];
|
||||
const double gradZ = grad[qz][qy][qx][2];
|
||||
|
||||
grad[qz][qy][qx][0] = (O11 * gradX) + (O12 * gradY) + (O13 * gradZ);
|
||||
grad[qz][qy][qx][1] = (O12 * gradX) + (O22 * gradY) + (O23 * gradZ);
|
||||
grad[qz][qy][qx][2] = (O13 * gradX) + (O23 * gradY) + (O33 * gradZ);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
double gradXY[NUM_DOFS_1D][NUM_DOFS_1D][4];
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradXY[dy][dx][0] = 0;
|
||||
gradXY[dy][dx][1] = 0;
|
||||
gradXY[dy][dx][2] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double gradX[NUM_DOFS_1D][4];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradX[dx][0] = 0;
|
||||
gradX[dx][1] = 0;
|
||||
gradX[dx][2] = 0;
|
||||
}
|
||||
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double gX = grad[qz][qy][qx][0];
|
||||
const double gY = grad[qz][qy][qx][1];
|
||||
const double gZ = grad[qz][qy][qx][2];
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double wx = quadToDof(dx, qx);
|
||||
const double wDx = quadToDofD(dx, qx);
|
||||
gradX[dx][0] += gX * wDx;
|
||||
gradX[dx][1] += gY * wx;
|
||||
gradX[dx][2] += gZ * wx;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = quadToDof(dy, qy);
|
||||
const double wDy = quadToDofD(dy, qy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradXY[dy][dx][0] += gradX[dx][0] * wy;
|
||||
gradXY[dy][dx][1] += gradX[dx][1] * wDy;
|
||||
gradXY[dy][dx][2] += gradX[dx][2] * wy;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double wz = quadToDof(dz, qz);
|
||||
const double wDz = quadToDofD(dz, qz);
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
solOut(dx, dy, dz, e) += ((gradXY[dy][dx][0] * wz) +
|
||||
(gradXY[dy][dx][1] * wz) +
|
||||
(gradXY[dy][dx][2] * wDz));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,433 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void Assemble1D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian1D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator1D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A1_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A1_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int q = 0; q < NUM_QUAD_1D; ++q; @inner) {
|
||||
oper(q, e) = quadWeights[q] * COEFF / J(q, e);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd1D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuad_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDof_t restrict quadToDofD,
|
||||
const SymmOperator1D_t restrict oper,
|
||||
const DLocal1D_t restrict solIn,
|
||||
DLocal1D_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M1_ELEMENT_BATCHES; @outer) {
|
||||
@shared double s_dofToQuadD[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_quadToDofD[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
@exclusive double grad[NUM_QUAD_1D];
|
||||
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
for (int i = el; i < NUM_QUAD_DOFS_1D; i += M1_INNER_ELEMENT_BATCH) {
|
||||
s_dofToQuadD[i] = dofToQuadD[i];
|
||||
s_quadToDofD[i] = quadToDofD[i];
|
||||
}
|
||||
}
|
||||
|
||||
for (int b = 0; b < M1_OUTER_ELEMENT_BATCH; ++b) {
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
const int e = eOff + b*M1_INNER_ELEMENT_BATCH + el;
|
||||
if (e < numElements) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] = 0;
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double s = solIn(dx, e);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] += s * s_dofToQuadD(qx, dx);
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
grad[qx] *= oper(qx, e);
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
double s = 0;
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
s += grad[qx] * s_quadToDofD(dx, qx);
|
||||
}
|
||||
solOut(dx, e) += s;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void Assemble2D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian2D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator2D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A2_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A2_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A2_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD_2D; q += A2_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e);
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / ((J11 * J22) - (J21 * J12));
|
||||
|
||||
oper(0, q, e) = c_detJ * (J21*J21 + J22*J22); // (1,1)
|
||||
oper(1, q, e) = -c_detJ * (J21*J11 + J22*J12); // (1,2), (2,1)
|
||||
oper(2, q, e) = c_detJ * (J11*J11 + J12*J12); // (2,2)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuad_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDof_t restrict quadToDofD,
|
||||
const SymmOperator2D_t restrict oper,
|
||||
const DLocal2D_t restrict solIn,
|
||||
DLocal2D_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M2_ELEMENT_BATCH; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_dofToQuadD[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_quadToDof[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
@shared double s_quadToDofD[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
// Store xy planes in shared memory
|
||||
@shared double s_xy[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
@shared double s_xDy[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
@shared double s_grad[2 * NUM_QUAD_2D] @dim(2, NUM_QUAD_1D, NUM_QUAD_1D);
|
||||
|
||||
@exclusive double r_x[NUM_MAX_1D];
|
||||
@exclusive double r_y[NUM_QUAD_1D];
|
||||
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
for (int id = x; id < NUM_QUAD_DOFS_1D; id += NUM_MAX_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
s_dofToQuadD[id] = dofToQuadD[id];
|
||||
s_quadToDof[id] = quadToDof[id];
|
||||
s_quadToDofD[id] = quadToDofD[id];
|
||||
}
|
||||
}
|
||||
|
||||
for (int e = eOff; e < (eOff + M2_ELEMENT_BATCH); ++e) {
|
||||
if (e < numElements) {
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx; @inner) {
|
||||
if (dx < NUM_DOFS_1D) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
s_xy(dx, qy) = 0;
|
||||
s_xDy(dx, qy) = 0;
|
||||
}
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
r_x[dy] = solIn(dx, dy, e);
|
||||
}
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double xy = 0;
|
||||
double xDy = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
xy += r_x[dy] * s_dofToQuad(qy, dy);
|
||||
xDy += r_x[dy] * s_dofToQuadD(qy, dy);
|
||||
}
|
||||
s_xy(dx, qy) = xy;
|
||||
s_xDy(dx, qy) = xDy;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
if (qy < NUM_QUAD_1D) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
double gradX = 0, gradY = 0;
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
gradX += s_xy(dx, qy) * s_dofToQuadD(qx, dx);
|
||||
gradY += s_xDy(dx, qy) * s_dofToQuad(qx, dx);
|
||||
}
|
||||
|
||||
const int q = QUAD_2D_ID(qx, qy);
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O22 = oper(2, q, e);
|
||||
|
||||
s_grad(0, qx, qy) = (O11 * gradX) + (O12 * gradY);
|
||||
s_grad(1, qx, qy) = (O12 * gradX) + (O22 * gradY);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx; @inner) {
|
||||
if (qx < NUM_QUAD_1D) {
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
s_xy(dy, qx) = 0;
|
||||
s_xDy(dy, qx) = 0;
|
||||
}
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
r_x[qy] = s_grad(0, qx, qy);
|
||||
r_y[qy] = s_grad(1, qx, qy);
|
||||
}
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double xy = 0;
|
||||
double xDy = 0;
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
xy += r_x[qy] * s_quadToDof(dy, qy);
|
||||
xDy += r_y[qy] * s_quadToDofD(dy, qy);
|
||||
}
|
||||
s_xy(dy, qx) = xy;
|
||||
s_xDy(dy, qx) = xDy;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx; @inner) {
|
||||
if (dx < NUM_DOFS_1D) {
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double s = 0;
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
s += ((s_xy(dy, qx) * s_quadToDofD(dx, qx)) +
|
||||
(s_xDy(dy, qx) * s_quadToDof(dx, qx)));
|
||||
}
|
||||
solOut(dx, dy, e) += s;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void Assemble3D(const int numElements,
|
||||
const double *quadWeights,
|
||||
const Jacobian3D_t J,
|
||||
COEFF_ARGS
|
||||
SymmOperator3D_t oper) {
|
||||
for (int eOff = 0; eOff < numElements; eOff += A3_ELEMENT_BATCH; @outer) {
|
||||
for (int e = eOff; e < (eOff + A3_ELEMENT_BATCH); ++e; @inner) {
|
||||
if (e < numElements) {
|
||||
for (int qOff = 0; qOff < A3_QUAD_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD_3D; q += A3_QUAD_BATCH) {
|
||||
const double J11 = J(0, 0, q, e), J12 = J(1, 0, q, e), J13 = J(2, 0, q, e);
|
||||
const double J21 = J(0, 1, q, e), J22 = J(1, 1, q, e), J23 = J(2, 1, q, e);
|
||||
const double J31 = J(0, 2, q, e), J32 = J(1, 2, q, e), J33 = J(2, 2, q, e);
|
||||
|
||||
const double detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
|
||||
const double c_detJ = quadWeights[q] * COEFF / detJ;
|
||||
|
||||
// adj(J)
|
||||
const double A11 = (J22 * J33) - (J23 * J32);
|
||||
const double A12 = (J23 * J31) - (J21 * J33);
|
||||
const double A13 = (J21 * J32) - (J22 * J31);
|
||||
|
||||
const double A21 = (J13 * J32) - (J12 * J33);
|
||||
const double A22 = (J11 * J33) - (J13 * J31);
|
||||
const double A23 = (J12 * J31) - (J11 * J32);
|
||||
|
||||
const double A31 = (J12 * J23) - (J13 * J22);
|
||||
const double A32 = (J13 * J21) - (J11 * J23);
|
||||
const double A33 = (J11 * J22) - (J12 * J21);
|
||||
|
||||
// adj(J)^Tadj(J)
|
||||
oper(0, q, e) = c_detJ * (A11*A11 + A21*A21 + A31*A31); // (1,1)
|
||||
oper(1, q, e) = c_detJ * (A11*A12 + A21*A22 + A31*A32); // (1,2), (2,1)
|
||||
oper(2, q, e) = c_detJ * (A11*A13 + A21*A23 + A31*A33); // (1,3), (3,1)
|
||||
oper(3, q, e) = c_detJ * (A12*A12 + A22*A22 + A32*A32); // (2,2)
|
||||
oper(4, q, e) = c_detJ * (A12*A13 + A22*A23 + A32*A33); // (2,3), (3,2)
|
||||
oper(5, q, e) = c_detJ * (A13*A13 + A23*A23 + A33*A33); // (3,3)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MultAdd3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DofToQuad_t restrict dofToQuadD,
|
||||
const QuadToDof_t restrict quadToDof,
|
||||
const QuadToDof_t restrict quadToDofD,
|
||||
const SymmOperator3D_t restrict oper,
|
||||
const DLocal3D_t restrict solIn,
|
||||
DLocal3D_t restrict solOut) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_dofToQuadD[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@shared double s_quadToDof[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
@shared double s_quadToDofD[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
// Store xy planes in shared memory
|
||||
@shared double s_z[NUM_MAX_2D] @dim(NUM_MAX_1D, NUM_MAX_1D);
|
||||
@shared double s_Dz[NUM_MAX_2D] @dim(NUM_MAX_1D, NUM_MAX_1D);
|
||||
@shared double s_xyDz[NUM_QUAD_2D] @dim(NUM_QUAD_1D, NUM_QUAD_1D);
|
||||
|
||||
// Store z axis as registers
|
||||
@exclusive double r_qz[NUM_QUAD_1D];
|
||||
@exclusive double r_qDz[NUM_QUAD_1D];
|
||||
@exclusive double r_dDxyz[NUM_DOFS_1D];
|
||||
@exclusive double r_dxDyz[NUM_DOFS_1D];
|
||||
@exclusive double r_dxyDz[NUM_DOFS_1D];
|
||||
|
||||
for (int y = 0; y < NUM_MAX_1D; ++y; @inner) {
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
const int id = (y * NUM_MAX_1D) + x;
|
||||
// Fetch Q <--> D maps
|
||||
if (id < NUM_QUAD_DOFS_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
s_dofToQuadD[id] = dofToQuadD[id];
|
||||
s_quadToDof[id] = quadToDof[id];
|
||||
s_quadToDofD[id] = quadToDofD[id];
|
||||
}
|
||||
// Initialize our Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_qz[qz] = 0;
|
||||
r_qDz[qz] = 0;
|
||||
}
|
||||
// Initialize our solution updates in the Z axis
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
r_dDxyz[dz] = 0;
|
||||
r_dxDyz[dz] = 0;
|
||||
r_dxyDz[dz] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double s = solIn(dx, dy, dz, e);
|
||||
// Calculate D -> Q in the Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_qz[qz] += s * s_dofToQuad(qz, dz);
|
||||
r_qDz[qz] += s * s_dofToQuadD(qz, dz);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
// For each xy plane
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
// Fill xy plane at given z position
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
s_z(dx, dy) = r_qz[qz];
|
||||
s_Dz(dx, dy) = r_qDz[qz];
|
||||
}
|
||||
}
|
||||
}
|
||||
// Calculate Dxyz, xDyz, xyDz in plane
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
for (int qx = 0; qx < NUM_MAX_1D; ++qx; @inner) {
|
||||
if ((qx < NUM_QUAD_1D) && (qy < NUM_QUAD_1D)) {
|
||||
double Dxyz = 0;
|
||||
double xDyz = 0;
|
||||
double xyDz = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = s_dofToQuad(qy, dy);
|
||||
const double wDy = s_dofToQuadD(qy, dy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double wx = s_dofToQuad(qx, dx);
|
||||
const double wDx = s_dofToQuadD(qx, dx);
|
||||
const double z = s_z(dx, dy);
|
||||
const double Dz = s_Dz(dx, dy);
|
||||
Dxyz += wDx * wy * z;
|
||||
xDyz += wx * wDy * z;
|
||||
xyDz += wx * wy * Dz;
|
||||
}
|
||||
}
|
||||
|
||||
const int q = QUAD_3D_ID(qx, qy, qz);
|
||||
const double O11 = oper(0, q, e);
|
||||
const double O12 = oper(1, q, e);
|
||||
const double O13 = oper(2, q, e);
|
||||
const double O22 = oper(3, q, e);
|
||||
const double O23 = oper(4, q, e);
|
||||
const double O33 = oper(5, q, e);
|
||||
|
||||
const double qDxyz = (O11 * Dxyz) + (O12 * xDyz) + (O13 * xyDz);
|
||||
const double qxDyz = (O12 * Dxyz) + (O22 * xDyz) + (O23 * xyDz);
|
||||
const double qxyDz = (O13 * Dxyz) + (O23 * xDyz) + (O33 * xyDz);
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double wz = s_quadToDof(dz, qz);
|
||||
const double wDz = s_quadToDofD(dz, qz);
|
||||
r_dDxyz[dz] += wz * qDxyz;
|
||||
r_dxDyz[dz] += wz * qxDyz;
|
||||
r_dxyDz[dz] += wDz * qxyDz;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
// Iterate over xy planes to compute solution
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
// Place xy plane in shared memory
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
for (int qx = 0; qx < NUM_MAX_1D; ++qx; @inner) {
|
||||
if ((qx < NUM_QUAD_1D) && (qy < NUM_QUAD_1D)) {
|
||||
s_z(qx, qy) = r_dDxyz[dz];
|
||||
s_Dz(qx, qy) = r_dxDyz[dz];
|
||||
s_xyDz(qx, qy) = r_dxyDz[dz];
|
||||
}
|
||||
}
|
||||
}
|
||||
// Finalize solution in xy plane
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
double solZ = 0;
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = s_quadToDof(dy, qy);
|
||||
const double wDy = s_quadToDofD(dy, qy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
const double wx = s_quadToDof(dx, qx);
|
||||
const double wDx = s_quadToDofD(dx, qx);
|
||||
const double Dxyz = s_z(qx, qy);
|
||||
const double xDyz = s_Dz(qx, qy);
|
||||
const double xyDz = s_xyDz(qx, qy);
|
||||
solZ += ((wDx * wy * Dxyz) +
|
||||
(wx * wDy * xDyz) +
|
||||
(wx * wy * xyDz));
|
||||
}
|
||||
}
|
||||
solOut(dx, dy, dz, e) += solZ;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,140 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "url_handler.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "../../general/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
bool Engine::fileOpenerRegistered = false;
|
||||
|
||||
void Engine::Init(const std::string &engine_spec)
|
||||
{
|
||||
//
|
||||
// Initialize inherited fields
|
||||
//
|
||||
memory_resources[0] = NULL;
|
||||
workers_weights[0]= 1.0;
|
||||
workers_mem_res[0] = 0;
|
||||
|
||||
//
|
||||
// Initialize the OCCA engine
|
||||
//
|
||||
::occa::properties props(engine_spec);
|
||||
device = new ::occa::device[1];
|
||||
device[0].setup(props);
|
||||
|
||||
okl_path = "mfem-occa://";
|
||||
// okl_defines = "...";
|
||||
if (!fileOpenerRegistered)
|
||||
{
|
||||
// The directories from "MFEM_OCCA_OKL_PATH", if any, have the highest
|
||||
// priority.
|
||||
FileOpener *fo = new FileOpener("mfem-occa://", "MFEM_OCCA_OKL_PATH");
|
||||
// Next in priority is the source path, if it exists.
|
||||
std::string mfem_src_prefix = mfem::GetSourcePath();
|
||||
fo->AddDir(mfem_src_prefix + "/backends/occa");
|
||||
// And last in priority is the install path, if it exists.
|
||||
std::string mfem_install_prefix = mfem::GetInstallPath();
|
||||
fo->AddDir(mfem_install_prefix + "/lib/mfem/occa");
|
||||
::occa::io::fileOpener::add(fo);
|
||||
fileOpenerRegistered = true;
|
||||
}
|
||||
}
|
||||
|
||||
Engine::Engine(const std::string &engine_spec)
|
||||
: mfem::Engine(NULL, 1, 1)
|
||||
{
|
||||
Init(engine_spec);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
Engine::Engine(MPI_Comm _comm, const std::string &engine_spec)
|
||||
: mfem::Engine(NULL, 1, 1)
|
||||
{
|
||||
comm = _comm;
|
||||
Init(engine_spec);
|
||||
}
|
||||
#endif
|
||||
|
||||
DLayout Engine::MakeLayout(std::size_t size) const
|
||||
{
|
||||
return DLayout(new Layout(*this, size));
|
||||
}
|
||||
|
||||
DLayout Engine::MakeLayout(const mfem::Array<std::size_t> &offsets) const
|
||||
{
|
||||
MFEM_ASSERT(offsets.Size() == 2,
|
||||
"multiple workers are not supported yet");
|
||||
return DLayout(new Layout(*this, offsets.Last()));
|
||||
}
|
||||
|
||||
DArray Engine::MakeArray(PLayout &layout, std::size_t item_size) const
|
||||
{
|
||||
MFEM_ASSERT(dynamic_cast<Layout *>(&layout) != NULL,
|
||||
"invalid input layout");
|
||||
Layout *lt = static_cast<Layout *>(&layout);
|
||||
return DArray(new Array(*lt, item_size));
|
||||
}
|
||||
|
||||
DVector Engine::MakeVector(PLayout &layout, int type_id) const
|
||||
{
|
||||
MFEM_ASSERT(type_id == ScalarId<double>::value, "invalid type_id");
|
||||
MFEM_ASSERT(dynamic_cast<Layout *>(&layout) != NULL,
|
||||
"invalid input layout");
|
||||
Layout *lt = static_cast<Layout *>(&layout);
|
||||
return DVector(new Vector(*lt));
|
||||
}
|
||||
|
||||
DFiniteElementSpace Engine::MakeFESpace(mfem::FiniteElementSpace &fespace) const
|
||||
{
|
||||
return DFiniteElementSpace(new FiniteElementSpace(*this, fespace));
|
||||
}
|
||||
|
||||
DBilinearForm Engine::MakeBilinearForm(mfem::BilinearForm &bf) const
|
||||
{
|
||||
return DBilinearForm(new BilinearForm(*this, bf));
|
||||
}
|
||||
|
||||
void Engine::AssembleLinearForm(LinearForm &l_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
}
|
||||
|
||||
mfem::Operator *Engine::MakeOperator(const MixedBilinearForm &mbl_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
mfem::Operator *Engine::MakeOperator(const NonlinearForm &nl_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,111 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_ENGINE_HPP
|
||||
#define MFEM_BACKENDS_OCCA_ENGINE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "../base/backend.hpp"
|
||||
#include <occa.hpp>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Engine : public mfem::Engine
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// mfem::Backend *backend;
|
||||
#ifdef MFEM_USE_MPI
|
||||
// MPI_Comm comm;
|
||||
#endif
|
||||
// int num_mem_res;
|
||||
// int num_workers;
|
||||
// MemoryResource **memory_resources;
|
||||
// double *workers_weights;
|
||||
// int *workers_mem_res;
|
||||
|
||||
static bool fileOpenerRegistered;
|
||||
::occa::device *device; // An array of OCCA devices
|
||||
std::string okl_path, okl_defines;
|
||||
|
||||
void Init(const std::string &engine_spec);
|
||||
|
||||
public:
|
||||
Engine(const std::string &engine_spec);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
Engine(MPI_Comm comm, const std::string &engine_spec);
|
||||
#endif
|
||||
|
||||
virtual ~Engine() { delete [] device; }
|
||||
|
||||
/**
|
||||
@name OCCA specific interface, used by other objects in the OCCA backend
|
||||
*/
|
||||
///@{
|
||||
|
||||
::occa::device GetDevice(int idx = 0) const { return device[idx]; }
|
||||
|
||||
/// TODO: doxygen
|
||||
const std::string &GetOklPath() const { return okl_path; }
|
||||
|
||||
/// TODO: doxygen
|
||||
const std::string &GetOklDefines() const { return okl_defines; }
|
||||
|
||||
///@}
|
||||
// End: OCCA specific interface
|
||||
|
||||
/**
|
||||
@name Virtual interface: finite element data structures and algorithms
|
||||
*/
|
||||
///@{
|
||||
|
||||
virtual DLayout MakeLayout(std::size_t size) const;
|
||||
virtual DLayout MakeLayout(const mfem::Array<std::size_t> &offsets) const;
|
||||
|
||||
virtual DArray MakeArray(PLayout &layout, std::size_t item_size) const;
|
||||
|
||||
virtual DVector MakeVector(PLayout &layout,
|
||||
int type_id = ScalarId<double>::value) const;
|
||||
|
||||
virtual DFiniteElementSpace MakeFESpace(mfem::FiniteElementSpace &
|
||||
fespace) const;
|
||||
|
||||
virtual DBilinearForm MakeBilinearForm(mfem::BilinearForm &bf) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual void AssembleLinearForm(LinearForm &l_form) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual mfem::Operator *MakeOperator(const MixedBilinearForm &mbl_form) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual mfem::Operator *MakeOperator(const NonlinearForm &nl_form) const;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_ENGINE_HPP
|
||||
@@ -0,0 +1,176 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "fespace.hpp"
|
||||
#include "interpolation.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
FiniteElementSpace::FiniteElementSpace(const Engine &e,
|
||||
mfem::FiniteElementSpace &fespace)
|
||||
: PFiniteElementSpace(e, fespace),
|
||||
e_layout(e, 0) // resized in SetupLocalGlobalMaps()
|
||||
{
|
||||
vdim = fespace.GetVDim();
|
||||
ordering = fespace.GetOrdering();
|
||||
|
||||
SetupLocalGlobalMaps();
|
||||
SetupOperators();
|
||||
SetupKernels();
|
||||
|
||||
e_layout.DontDelete();
|
||||
}
|
||||
|
||||
FiniteElementSpace::~FiniteElementSpace()
|
||||
{
|
||||
delete [] elementDofMap;
|
||||
delete [] elementDofMapInverse;
|
||||
delete restrictionOp;
|
||||
delete prolongationOp;
|
||||
}
|
||||
|
||||
void FiniteElementSpace::SetupLocalGlobalMaps()
|
||||
{
|
||||
const mfem::FiniteElement &fe = *(fes->GetFE(0));
|
||||
const mfem::TensorBasisElement *el =
|
||||
dynamic_cast<const mfem::TensorBasisElement*>(&fe);
|
||||
|
||||
const mfem::Table &e2dTable = fes->GetElementToDofTable();
|
||||
const int *elementMap = e2dTable.GetJ();
|
||||
const int elements = fes->GetNE();
|
||||
|
||||
globalDofs = fes->GetNDofs();
|
||||
localDofs = fe.GetDof();
|
||||
|
||||
e_layout.Resize(localDofs * elements * fes->GetVDim());
|
||||
|
||||
elementDofMap = new int[localDofs];
|
||||
elementDofMapInverse = new int[localDofs];
|
||||
if (el)
|
||||
{
|
||||
::memcpy(elementDofMap,
|
||||
el->GetDofMap().GetData(),
|
||||
localDofs * sizeof(int));
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int i = 0; i < localDofs; ++i)
|
||||
{
|
||||
elementDofMap[i] = i;
|
||||
}
|
||||
}
|
||||
for (int i = 0; i < localDofs; ++i)
|
||||
{
|
||||
elementDofMapInverse[elementDofMap[i]] = i;
|
||||
}
|
||||
|
||||
// Allocate device offsets and indices
|
||||
globalToLocalOffsets.allocate(GetDevice(),
|
||||
globalDofs + 1);
|
||||
globalToLocalIndices.allocate(GetDevice(),
|
||||
localDofs, elements);
|
||||
localToGlobalMap.allocate(GetDevice(),
|
||||
localDofs, elements);
|
||||
|
||||
int *offsets = globalToLocalOffsets.ptr();
|
||||
int *indices = globalToLocalIndices.ptr();
|
||||
int *l2gMap = localToGlobalMap.ptr();
|
||||
|
||||
// We'll be keeping a count of how many local nodes point
|
||||
// to its global dof
|
||||
for (int i = 0; i <= globalDofs; ++i)
|
||||
{
|
||||
offsets[i] = 0;
|
||||
}
|
||||
|
||||
for (int e = 0; e < elements; ++e)
|
||||
{
|
||||
for (int d = 0; d < localDofs; ++d)
|
||||
{
|
||||
const int gid = elementMap[localDofs*e + d];
|
||||
++offsets[gid + 1];
|
||||
}
|
||||
}
|
||||
// Aggregate to find offsets for each global dof
|
||||
for (int i = 1; i <= globalDofs; ++i)
|
||||
{
|
||||
offsets[i] += offsets[i - 1];
|
||||
}
|
||||
// For each global dof, fill in all local nodes that point
|
||||
// to it
|
||||
for (int e = 0; e < elements; ++e)
|
||||
{
|
||||
for (int d = 0; d < localDofs; ++d)
|
||||
{
|
||||
const int gid = elementMap[localDofs*e + elementDofMap[d]];
|
||||
const int lid = localDofs*e + d;
|
||||
indices[offsets[gid]++] = lid;
|
||||
l2gMap[lid] = gid;
|
||||
}
|
||||
}
|
||||
// We shifted the offsets vector by 1 by using it
|
||||
// as a counter. Now we shift it back.
|
||||
for (int i = globalDofs; i > 0; --i)
|
||||
{
|
||||
offsets[i] = offsets[i - 1];
|
||||
}
|
||||
offsets[0] = 0;
|
||||
|
||||
globalToLocalOffsets.keepInDevice();
|
||||
globalToLocalIndices.keepInDevice();
|
||||
localToGlobalMap.keepInDevice();
|
||||
}
|
||||
|
||||
void FiniteElementSpace::SetupOperators()
|
||||
{
|
||||
const mfem::SparseMatrix *R = fes->GetRestrictionMatrix();
|
||||
const mfem::Operator *P = fes->GetProlongationMatrix();
|
||||
CreateRPOperators(OccaVLayout(), OccaTrueVLayout(),
|
||||
R, P,
|
||||
restrictionOp,
|
||||
prolongationOp);
|
||||
}
|
||||
|
||||
void FiniteElementSpace::SetupKernels()
|
||||
{
|
||||
::occa::properties props("defines: {"
|
||||
" TILESIZE: 256,"
|
||||
"}");
|
||||
props["defines/NUM_VDIM"] = vdim;
|
||||
|
||||
props["defines/ORDERING_BY_NODES"] = 0;
|
||||
props["defines/ORDERING_BY_VDIM"] = 1;
|
||||
props["defines/VDIM_ORDERING"] = (int) (ordering == Ordering::byVDIM);
|
||||
|
||||
::occa::device device = GetDevice();
|
||||
const std::string &okl_path = OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = OccaEngine().GetOklDefines();
|
||||
globalToLocalKernel = device.buildKernel(okl_path + "fespace.okl",
|
||||
"GlobalToLocal",
|
||||
props + okl_defines);
|
||||
localToGlobalKernel = device.buildKernel(okl_path + "fespace.okl",
|
||||
"LocalToGlobal",
|
||||
props + okl_defines);
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,146 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_FE_SPACE_HPP
|
||||
#define MFEM_BACKENDS_OCCA_FE_SPACE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "engine.hpp"
|
||||
#include "operator.hpp"
|
||||
#include "../../fem/fem.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
/// TODO: doxygen
|
||||
class FiniteElementSpace : public mfem::PFiniteElementSpace
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// mfem::FiniteElementSpace *fes;
|
||||
|
||||
Layout e_layout;
|
||||
|
||||
int *elementDofMap;
|
||||
int *elementDofMapInverse;
|
||||
|
||||
::occa::array<int> globalToLocalOffsets;
|
||||
::occa::array<int> globalToLocalIndices;
|
||||
::occa::array<int> localToGlobalMap;
|
||||
::occa::kernel globalToLocalKernel, localToGlobalKernel;
|
||||
|
||||
mfem::Ordering::Type ordering;
|
||||
|
||||
int globalDofs, localDofs;
|
||||
int vdim;
|
||||
|
||||
mfem::Operator *restrictionOp, *prolongationOp;
|
||||
|
||||
void SetupLocalGlobalMaps();
|
||||
void SetupOperators();
|
||||
void SetupKernels();
|
||||
|
||||
public:
|
||||
/// TODO: doxygen
|
||||
FiniteElementSpace(const Engine &e, mfem::FiniteElementSpace &fespace);
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~FiniteElementSpace();
|
||||
|
||||
/// TODO: doxygen
|
||||
const Engine &OccaEngine() const
|
||||
{ return *static_cast<const Engine *>(engine.Get()); }
|
||||
|
||||
/// TODO: doxygen
|
||||
::occa::device GetDevice(int idx = 0) const
|
||||
{ return OccaEngine().GetDevice(idx); }
|
||||
|
||||
mfem::Mesh* GetMesh() const { return fes->GetMesh(); }
|
||||
|
||||
Layout &OccaVLayout() const
|
||||
{ return *fes->GetVLayout().As<Layout>(); }
|
||||
|
||||
Layout &OccaTrueVLayout() const
|
||||
{ return *fes->GetTrueVLayout().As<Layout>(); }
|
||||
|
||||
Layout &OccaEVLayout() { return e_layout; }
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
bool isDistributed() const { return (OccaEngine().GetComm() != MPI_COMM_NULL); }
|
||||
#else
|
||||
bool isDistributed() const { return false; }
|
||||
#endif
|
||||
|
||||
bool hasTensorBasis() const
|
||||
{ return dynamic_cast<const mfem::TensorBasisElement*>(fes->GetFE(0)); }
|
||||
|
||||
mfem::Ordering::Type GetOrdering() const { return ordering; }
|
||||
|
||||
int GetGlobalDofs() const { return globalDofs; }
|
||||
int GetLocalDofs() const { return localDofs; }
|
||||
|
||||
int GetDim() const { return fes->GetMesh()->Dimension(); }
|
||||
int GetVDim() const { return vdim; }
|
||||
|
||||
int GetVSize() const { return globalDofs * vdim; }
|
||||
int GetTrueVSize() const { return fes->GetTrueVSize(); }
|
||||
int GetGlobalVSize() const { return globalDofs*vdim; /* FIXME: MPI */ }
|
||||
int GetGlobalTrueVSize() const { return fes->GetTrueVSize(); }
|
||||
|
||||
int GetNE() const { return fes->GetNE(); }
|
||||
|
||||
const mfem::FiniteElementCollection* FEColl() const
|
||||
{ return fes->FEColl(); }
|
||||
const mfem::FiniteElement* GetFE(const int idx) const
|
||||
{ return fes->GetFE(idx); }
|
||||
|
||||
const int* GetElementDofMap() const { return elementDofMap; }
|
||||
const int* GetElementDofMapInverse() const { return elementDofMapInverse; }
|
||||
|
||||
const mfem::Operator* GetRestrictionOperator() { return restrictionOp; }
|
||||
const mfem::Operator* GetProlongationOperator() { return prolongationOp; }
|
||||
|
||||
const ::occa::array<int> GetLocalToGlobalMap() const
|
||||
{ return localToGlobalMap; }
|
||||
|
||||
void GlobalToLocal(const Vector &globalVec, Vector &localVec) const
|
||||
{
|
||||
globalToLocalKernel(globalDofs,
|
||||
localDofs * fes->GetNE(),
|
||||
globalToLocalOffsets,
|
||||
globalToLocalIndices,
|
||||
globalVec.OccaMem(), localVec.OccaMem());
|
||||
}
|
||||
void LocalToGlobal(const Vector &localVec, Vector &globalVec) const
|
||||
{
|
||||
localToGlobalKernel(globalDofs,
|
||||
localDofs * fes->GetNE(),
|
||||
globalToLocalOffsets,
|
||||
globalToLocalIndices,
|
||||
localVec.OccaMem(), globalVec.OccaMem());
|
||||
}
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_FE_SPACE_HPP
|
||||
@@ -0,0 +1,67 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
TILESIZE : Tilesize for iterating over entries
|
||||
================================================
|
||||
*/
|
||||
|
||||
#if VDIM_ORDERING == ORDERING_BY_VDIM
|
||||
typedef double *Global_t @dim(NUM_VDIM, globalEntries);
|
||||
typedef double *Local_t @dim(NUM_VDIM, localEntries);
|
||||
#else
|
||||
typedef double *Global_t @dim(NUM_VDIM, globalEntries) @dimOrder(1, 0);
|
||||
typedef double *Local_t @dim(NUM_VDIM, localEntries) @dimOrder(1, 0);
|
||||
#endif
|
||||
|
||||
@kernel void GlobalToLocal(const int globalEntries,
|
||||
const int localEntries,
|
||||
const int * restrict offsets,
|
||||
const int * restrict indices,
|
||||
const Global_t restrict globalX,
|
||||
Local_t restrict localX) {
|
||||
|
||||
for (int i = 0; i < globalEntries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < globalEntries) {
|
||||
const int offset = offsets[i];
|
||||
const int nextOffset = offsets[i + 1];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double dofValue = globalX(v, i);
|
||||
for (int j = offset; j < nextOffset; ++j) {
|
||||
localX(v, indices[j]) = dofValue;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void LocalToGlobal(const int globalEntries,
|
||||
const int localEntries,
|
||||
const int * restrict offsets,
|
||||
const int * restrict indices,
|
||||
const Local_t restrict localX,
|
||||
Global_t restrict globalX) {
|
||||
|
||||
for (int i = 0; i < globalEntries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < globalEntries) {
|
||||
const int offset = offsets[i];
|
||||
const int nextOffset = offsets[i + 1];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
double dofValue = 0;
|
||||
for (int j = offset; j < nextOffset; ++j) {
|
||||
dofValue += localX(v, indices[j]);
|
||||
}
|
||||
globalX(v, i) = dofValue;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,181 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef STORE_JACOBIAN
|
||||
# define STORE_JACOBIAN 1
|
||||
#endif
|
||||
|
||||
#ifndef STORE_JACOBIAN_INV
|
||||
# define STORE_JACOBIAN_INV 1
|
||||
#endif
|
||||
|
||||
#ifndef STORE_JACOBIAN_DET
|
||||
# define STORE_JACOBIAN_DET 1
|
||||
#endif
|
||||
|
||||
typedef double* Local1D_t @dim(1, NUM_DOFS, numElements);
|
||||
typedef double* Local2D_t @dim(2, NUM_DOFS, numElements);
|
||||
typedef double* Local3D_t @dim(3, NUM_DOFS, numElements);
|
||||
|
||||
typedef double* QLocal_t @dim(NUM_QUAD, numElements);
|
||||
|
||||
typedef double* DofToQuadD1D_t @dim(NUM_QUAD, NUM_DOFS);
|
||||
typedef double* DofToQuadD2D_t @dim(2, NUM_QUAD, NUM_DOFS);
|
||||
typedef double* DofToQuadD3D_t @dim(3, NUM_QUAD, NUM_DOFS);
|
||||
|
||||
typedef double* Jacobian1D_t @dim(NUM_QUAD, numElements);
|
||||
typedef double* Jacobian2D_t @dim(2, 2, NUM_QUAD, numElements);
|
||||
typedef double* Jacobian3D_t @dim(3, 3, NUM_QUAD, numElements);
|
||||
|
||||
@kernel void InitGeometryInfo1D(const int numElements,
|
||||
const DofToQuadD1D_t restrict dofToQuadD,
|
||||
const Local1D_t restrict nodes,
|
||||
Jacobian1D_t restrict J,
|
||||
Jacobian1D_t restrict invJ,
|
||||
QLocal_t restrict detJ) {
|
||||
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_nodes[NUM_DOFS];
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
for (int d = q; d < NUM_DOFS; d += NUM_QUAD) {
|
||||
s_nodes[d] = nodes(0, d, e);
|
||||
}
|
||||
}
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
double J11 = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double wx = dofToQuadD(q, d);
|
||||
J11 += wx * s_nodes[d];
|
||||
}
|
||||
#if STORE_JACOBIAN
|
||||
J(q, e) = J11;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_INV
|
||||
invJ(q, e) = 1.0 / J11;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_DET
|
||||
detJ(q, e) = J11;
|
||||
#endif
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void InitGeometryInfo2D(const int numElements,
|
||||
const DofToQuadD2D_t restrict dofToQuadD,
|
||||
const Local2D_t restrict nodes,
|
||||
Jacobian2D_t restrict J,
|
||||
Jacobian2D_t restrict invJ,
|
||||
QLocal_t restrict detJ) {
|
||||
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_nodes[2 * NUM_DOFS] @dim(2, NUM_DOFS);
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
for (int d = q; d < NUM_DOFS; d += NUM_QUAD) {
|
||||
s_nodes(0, d) = nodes(0, d, e);
|
||||
s_nodes(1, d) = nodes(1, d, e);
|
||||
}
|
||||
}
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
double J11 = 0, J12 = 0;
|
||||
double J21 = 0, J22 = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double wx = dofToQuadD(0, q, d);
|
||||
const double wy = dofToQuadD(1, q, d);
|
||||
const double x = s_nodes(0, d);
|
||||
const double y = s_nodes(1, d);
|
||||
J11 += (wx * x); J12 += (wx * y);
|
||||
J21 += (wy * x); J22 += (wy * y);
|
||||
}
|
||||
#if STORE_JACOBIAN_INV || STORE_JACOBIAN_DET
|
||||
const double r_detJ = (J11 * J22) - (J12 * J21);
|
||||
#endif
|
||||
#if STORE_JACOBIAN
|
||||
J(0, 0, q, e) = J11; J(1, 0, q, e) = J12;
|
||||
J(0, 1, q, e) = J21; J(1, 1, q, e) = J22;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_INV
|
||||
const double r_idetJ = 1.0 / r_detJ;
|
||||
invJ(0, 0, q, e) = J22 * r_idetJ;
|
||||
invJ(1, 0, q, e) = -J12 * r_idetJ;
|
||||
|
||||
invJ(0, 1, q, e) = -J21 * r_idetJ;
|
||||
invJ(1, 1, q, e) = J11 * r_idetJ;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_DET
|
||||
detJ(q, e) = r_detJ;
|
||||
#endif
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void InitGeometryInfo3D(const int numElements,
|
||||
const DofToQuadD3D_t restrict dofToQuadD,
|
||||
const Local3D_t restrict nodes,
|
||||
Jacobian3D_t restrict J,
|
||||
Jacobian3D_t restrict invJ,
|
||||
QLocal_t restrict detJ) {
|
||||
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_nodes[3 * NUM_DOFS] @dim(3, NUM_DOFS);
|
||||
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
for (int d = q; d < NUM_DOFS; d += NUM_QUAD) {
|
||||
s_nodes(0, d) = nodes(0, d, e);
|
||||
s_nodes(1, d) = nodes(1, d, e);
|
||||
s_nodes(2, d) = nodes(2, d, e);
|
||||
}
|
||||
}
|
||||
for (int q = 0; q < NUM_QUAD; ++q; @inner) {
|
||||
double J11 = 0, J12 = 0, J13 = 0;
|
||||
double J21 = 0, J22 = 0, J23 = 0;
|
||||
double J31 = 0, J32 = 0, J33 = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const double wx = dofToQuadD(0, q, d);
|
||||
const double wy = dofToQuadD(1, q, d);
|
||||
const double wz = dofToQuadD(2, q, d);
|
||||
const double x = s_nodes(0, d);
|
||||
const double y = s_nodes(1, d);
|
||||
const double z = s_nodes(2, d);
|
||||
J11 += (wx * x); J12 += (wx * y); J13 += (wx * z);
|
||||
J21 += (wy * x); J22 += (wy * y); J23 += (wy * z);
|
||||
J31 += (wz * x); J32 += (wz * y); J33 += (wz * z);
|
||||
}
|
||||
#if STORE_JACOBIAN_INV || STORE_JACOBIAN_DET
|
||||
const double r_detJ = ((J11 * J22 * J33) + (J12 * J23 * J31) + (J13 * J21 * J32) -
|
||||
(J13 * J22 * J31) - (J12 * J21 * J33) - (J11 * J23 * J32));
|
||||
#endif
|
||||
#if STORE_JACOBIAN
|
||||
J(0, 0, q, e) = J11; J(1, 0, q, e) = J12; J(2, 0, q, e) = J13;
|
||||
J(0, 1, q, e) = J21; J(1, 1, q, e) = J22; J(2, 1, q, e) = J23;
|
||||
J(0, 2, q, e) = J31; J(1, 2, q, e) = J32; J(2, 2, q, e) = J33;
|
||||
#endif
|
||||
#if STORE_JACOBIAN_INV
|
||||
const double r_idetJ = 1.0 / r_detJ;
|
||||
invJ(0, 0, q, e) = r_idetJ * ((J22 * J33) - (J23 * J32));
|
||||
invJ(1, 0, q, e) = r_idetJ * ((J32 * J13) - (J33 * J12));
|
||||
invJ(2, 0, q, e) = r_idetJ * ((J12 * J23) - (J13 * J22));
|
||||
|
||||
invJ(0, 1, q, e) = r_idetJ * ((J23 * J31) - (J21 * J33));
|
||||
invJ(1, 1, q, e) = r_idetJ * ((J33 * J11) - (J31 * J13));
|
||||
invJ(2, 1, q, e) = r_idetJ * ((J13 * J21) - (J11 * J23));
|
||||
|
||||
invJ(0, 2, q, e) = r_idetJ * ((J21 * J32) - (J22 * J31));
|
||||
invJ(1, 2, q, e) = r_idetJ * ((J31 * J12) - (J32 * J11));
|
||||
invJ(2, 2, q, e) = r_idetJ * ((J11 * J22) - (J12 * J21));
|
||||
#endif
|
||||
#if STORE_JACOBIAN_DET
|
||||
detJ(q, e) = r_detJ;
|
||||
#endif
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,195 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "gridfunc.hpp"
|
||||
#include "bilininteg.hpp"
|
||||
#include "../../fem/gridfunc.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
std::map<std::string, ::occa::kernel> gridFunctionKernels;
|
||||
|
||||
::occa::kernel GetGridFunctionKernel(::occa::device device,
|
||||
FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir)
|
||||
{
|
||||
const int numQuad = ir.GetNPoints();
|
||||
|
||||
const FiniteElement &fe = *(fespace.GetFE(0));
|
||||
const int dim = fe.GetDim();
|
||||
const int vdim = fespace.GetVDim();
|
||||
|
||||
std::stringstream ss;
|
||||
ss << ::occa::hash(device)
|
||||
<< "FEColl : " << fespace.FEColl()->Name()
|
||||
<< "Quad: " << numQuad
|
||||
<< "Dim: " << dim
|
||||
<< "VDim: " << vdim;
|
||||
std::string hash = ss.str();
|
||||
|
||||
// Kernel defines
|
||||
::occa::properties props;
|
||||
props["defines/NUM_VDIM"] = vdim;
|
||||
|
||||
SetProperties(fespace, ir, props);
|
||||
|
||||
::occa::kernel kernel = gridFunctionKernels[hash];
|
||||
if (!kernel.isInitialized())
|
||||
{
|
||||
const std::string &okl_path = fespace.OccaEngine().GetOklPath();
|
||||
kernel = device.buildKernel(okl_path + "gridfunc.okl",
|
||||
stringWithDim("GridFuncToQuad", dim),
|
||||
props);
|
||||
}
|
||||
return kernel;
|
||||
}
|
||||
|
||||
// OccaGridFunction::OccaGridFunction() :
|
||||
// Vector(),
|
||||
// ofespace(NULL),
|
||||
// sequence(0) {}
|
||||
|
||||
OccaGridFunction::OccaGridFunction(FiniteElementSpace *ofespace_)
|
||||
: PArray(ofespace_->OccaVLayout()),
|
||||
Array(ofespace_->OccaVLayout(), sizeof(double)),
|
||||
Vector(ofespace_->OccaVLayout()),
|
||||
ofespace(ofespace_),
|
||||
sequence(0) {}
|
||||
|
||||
// OccaGridFunction::OccaGridFunction(OccaFiniteElementSpace *ofespace_,
|
||||
// OccaVectorRef ref) :
|
||||
// OccaVector(ref),
|
||||
// ofespace(ofespace_),
|
||||
// sequence(0) {}
|
||||
|
||||
OccaGridFunction::OccaGridFunction(const OccaGridFunction &v)
|
||||
: PArray(v),
|
||||
Array(v),
|
||||
Vector(v),
|
||||
ofespace(v.ofespace),
|
||||
sequence(v.sequence) {}
|
||||
|
||||
OccaGridFunction& OccaGridFunction::operator = (double value)
|
||||
{
|
||||
Fill(value);
|
||||
return *this;
|
||||
}
|
||||
|
||||
OccaGridFunction& OccaGridFunction::operator = (const Vector &v)
|
||||
{
|
||||
Assign<double>(v);
|
||||
return *this;
|
||||
}
|
||||
|
||||
// OccaGridFunction& OccaGridFunction::operator = (const OccaVectorRef &v)
|
||||
// {
|
||||
// OccaVector::operator = (v);
|
||||
// return *this;
|
||||
// }
|
||||
|
||||
OccaGridFunction& OccaGridFunction::operator = (const OccaGridFunction &v)
|
||||
{
|
||||
Assign<double>(v);
|
||||
return *this;
|
||||
}
|
||||
|
||||
// void OccaGridFunction::SetGridFunction(mfem::GridFunction &gf)
|
||||
// {
|
||||
// Vector v = *this;
|
||||
// gf.MakeRef(ofespace->GetFESpace(), v, 0);
|
||||
// // Make gf the owner of the data
|
||||
// v.Swap(gf);
|
||||
// }
|
||||
|
||||
void OccaGridFunction::GetTrueDofs(Vector &v)
|
||||
{
|
||||
const mfem::Operator *R = ofespace->GetRestrictionOperator();
|
||||
if (!R)
|
||||
{
|
||||
v.MakeRef(*this);
|
||||
}
|
||||
else
|
||||
{
|
||||
v.Resize<double>(R->OutLayout(), NULL);
|
||||
mfem::Vector mfem_v(v);
|
||||
R->Mult(this->Wrap(), mfem_v);
|
||||
}
|
||||
}
|
||||
|
||||
void OccaGridFunction::SetFromTrueDofs(Vector &v)
|
||||
{
|
||||
const mfem::Operator *P = ofespace->GetProlongationOperator();
|
||||
if (!P)
|
||||
{
|
||||
MakeRef(v);
|
||||
}
|
||||
else
|
||||
{
|
||||
Resize<double>(P->OutLayout(), NULL);
|
||||
mfem::Vector mfem_this(*this);
|
||||
P->Mult(v.Wrap(), mfem_this);
|
||||
}
|
||||
}
|
||||
|
||||
mfem::FiniteElementSpace* OccaGridFunction::GetFESpace()
|
||||
{
|
||||
return ofespace->GetFESpace();
|
||||
}
|
||||
|
||||
const mfem::FiniteElementSpace* OccaGridFunction::GetFESpace() const
|
||||
{
|
||||
return ofespace->GetFESpace();
|
||||
}
|
||||
|
||||
void OccaGridFunction::ToQuad(const IntegrationRule &ir, Vector &quadValues)
|
||||
{
|
||||
const Engine &engine = OccaLayout().OccaEngine();
|
||||
::occa::device device = engine.GetDevice();
|
||||
|
||||
OccaDofQuadMaps &maps = OccaDofQuadMaps::Get(device, *ofespace, ir);
|
||||
|
||||
const int elements = ofespace->GetNE();
|
||||
const int numQuad = ir.GetNPoints();
|
||||
quadValues.Resize<double>(*(new Layout(engine, numQuad * elements)), NULL);
|
||||
|
||||
::occa::kernel g2qKernel = GetGridFunctionKernel(device, *ofespace, ir);
|
||||
g2qKernel(elements,
|
||||
maps.dofToQuad,
|
||||
ofespace->GetLocalToGlobalMap(),
|
||||
this->OccaMem(),
|
||||
quadValues.OccaMem());
|
||||
}
|
||||
|
||||
void OccaGridFunction::Distribute(const Vector &v)
|
||||
{
|
||||
if (ofespace->isDistributed())
|
||||
{
|
||||
mfem::Vector mfem_this(*this);
|
||||
ofespace->GetProlongationOperator()->Mult(v.Wrap(), mfem_this);
|
||||
}
|
||||
else
|
||||
{
|
||||
*this = v;
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,83 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_GRID_FUNC_HPP
|
||||
#define MFEM_BACKENDS_OCCA_GRID_FUNC_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
class IntegrationRule;
|
||||
class GridFunction;
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class OccaIntegrator;
|
||||
class OccaDofQuadMaps;
|
||||
|
||||
// TODO: make this object part of the backend or the engine.
|
||||
extern std::map<std::string, ::occa::kernel> gridFunctionKernels;
|
||||
|
||||
// TODO: make this a method of the backend or the engine.
|
||||
::occa::kernel GetGridFunctionKernel(::occa::device device,
|
||||
FiniteElementSpace &fespace,
|
||||
const mfem::IntegrationRule &ir);
|
||||
|
||||
class OccaGridFunction : public Vector
|
||||
{
|
||||
protected:
|
||||
FiniteElementSpace *ofespace;
|
||||
long sequence;
|
||||
|
||||
::occa::kernel gridFuncToQuad[3];
|
||||
|
||||
public:
|
||||
// OccaGridFunction();
|
||||
|
||||
OccaGridFunction(FiniteElementSpace *ofespace_);
|
||||
|
||||
// OccaGridFunction(FiniteElementSpace *ofespace_,
|
||||
// OccaVectorRef ref);
|
||||
|
||||
OccaGridFunction(const OccaGridFunction &gf);
|
||||
|
||||
OccaGridFunction& operator = (double value);
|
||||
OccaGridFunction& operator = (const Vector &v);
|
||||
// OccaGridFunction& operator = (const OccaVectorRef &v);
|
||||
OccaGridFunction& operator = (const OccaGridFunction &gf);
|
||||
|
||||
// void SetGridFunction(mfem::GridFunction &gf);
|
||||
|
||||
void GetTrueDofs(Vector &v);
|
||||
void SetFromTrueDofs(Vector &v);
|
||||
|
||||
mfem::FiniteElementSpace* GetFESpace();
|
||||
const mfem::FiniteElementSpace* GetFESpace() const;
|
||||
|
||||
void ToQuad(const mfem::IntegrationRule &ir, Vector &quadValues);
|
||||
|
||||
void Distribute(const Vector &v);
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_GRID_FUNC_HPP
|
||||
@@ -0,0 +1,26 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
#if USING_TENSOR_OPS
|
||||
# if OCCA_USING_CPU
|
||||
# include "mfem-occa://gridfunc/tensor/cpu.okl"
|
||||
# else
|
||||
# include "mfem-occa://gridfunc/tensor/gpuHighOrder.okl"
|
||||
# endif
|
||||
#else
|
||||
# if OCCA_USING_CPU
|
||||
# include "mfem-occa://gridfunc/simplex/cpu.okl"
|
||||
# else
|
||||
# include "mfem-occa://gridfunc/simplex/gpuHighOrder.okl"
|
||||
# endif
|
||||
#endif
|
||||
@@ -0,0 +1,63 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void GridFuncToQuad2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal_t restrict out) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const int gid = l2gMap(d, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
double r_out = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
r_out += r_gf * dofToQuad(d, q);
|
||||
}
|
||||
out(v, d, e) = r_out;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void GridFuncToQuad3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal_t restrict out) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
const int gid = l2gMap(d, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
double r_out = 0;
|
||||
for (int q = 0; q < NUM_QUAD; ++q) {
|
||||
r_out += r_gf * dofToQuad(d, q);
|
||||
}
|
||||
out(v, d, e) = r_out;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,79 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void GridFuncToQuad2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal_t restrict out) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_gf[NUM_VDIM][NUM_DOFS];
|
||||
|
||||
for (int dOff = 0; dOff < M2_INNER_BATCH; ++dOff; @inner) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M2_INNER_BATCH) {
|
||||
const int gid = l2gMap(d, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
s_gf[v][d] = gf[v + gid*NUM_VDIM]];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qOff = 0; qOff < M2_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M2_INNER_BATCH) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
double r_out = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_out += s_gf[v][d] * dofToQuad(d, q);
|
||||
}
|
||||
out(v, q, e) = r_out;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void GridFuncToQuad3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal_t restrict out) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
@shared double s_gf[NUM_VDIM][NUM_DOFS];
|
||||
|
||||
for (int dOff = 0; dOff < M3_INNER_BATCH; ++dOff; @inner) {
|
||||
for (int d = dOff; d < NUM_DOFS; d += M3_INNER_BATCH) {
|
||||
const int gid = l2gMap(d, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
s_gf[v][d] = gf[v + gid*NUM_VDIM]];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qOff = 0; qOff < M3_INNER_BATCH; ++qOff; @inner) {
|
||||
for (int q = qOff; q < NUM_QUAD; q += M3_INNER_BATCH) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
double r_out = 0;
|
||||
for (int d = 0; d < NUM_DOFS; ++d) {
|
||||
r_out += s_gf[v][d] * dofToQuad(d, q);
|
||||
}
|
||||
out(v, q, e) = r_out;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,188 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void GridFuncToQuad1D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap1D_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal1D_t restrict out) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double r_out[NUM_VDIM][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_out[v][qx] = 0;
|
||||
}
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const int gid = l2gMap(dx, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_out[v][qx] += r_gf * dofToQuad(qx, dx);
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
out(v, qx, e) = r_out[v][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void GridFuncToQuad2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap2D_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal2D_t restrict out) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double out_xy[NUM_VDIM][NUM_QUAD_1D][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xy[v][qy][qx] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double out_x[NUM_VDIM][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
out_x[v][qy] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const int gid = l2gMap(dx, dy, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
out_x[v][qy] += r_gf * dofToQuad(qy, dx);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double d2q = dofToQuad(qy, dy);
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xy[v][qy][qx] += d2q * out_x[v][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
out(v, qx, qy, e) = out_xy[v][qy][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void GridFuncToQuad3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap3D_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QVLocal3D_t restrict out) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int dummy = 0; dummy < 1; ++dummy; @inner) {
|
||||
double out_xyz[NUM_VDIM][NUM_QUAD_1D][NUM_QUAD_1D][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xyz[v][qz][qy][qx] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
double out_xy[NUM_VDIM][NUM_QUAD_1D][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xy[v][qy][qx] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
double out_x[NUM_VDIM][NUM_QUAD_1D];
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_x[v][qx] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const int gid = l2gMap(dx, dy, dz, e);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
const double r_gf = gf[v + gid*NUM_VDIM];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_x[v][qx] += r_gf * dofToQuad(qx, dx);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
const double wy = dofToQuad(qy, dy);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xy[v][qy][qx] += wy * out_x[v][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
const double wz = dofToQuad(qz, dz);
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out_xyz[v][qz][qy][qx] += wz * out_xy[v][qy][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
for (int v = 0; v < NUM_VDIM; ++v) {
|
||||
out(v, qx, qy, qz, e) = out_xyz[v][qz][qy][qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,183 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "mfem-occa://defines.okl"
|
||||
|
||||
//---[ 1D ]-----------------------------
|
||||
@kernel void GridFuncToQuad1D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap1D_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QLocal1D_t restrict out) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M1_ELEMENT_BATCHES; @outer) {
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
@exclusive double r_out[NUM_QUAD_1D];
|
||||
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
for (int i = el; i < NUM_QUAD_DOFS_1D; i += M1_INNER_ELEMENT_BATCH) {
|
||||
s_dofToQuad[i] = dofToQuad[i];
|
||||
}
|
||||
}
|
||||
|
||||
for (int b = 0; b < M1_OUTER_ELEMENT_BATCH; ++b) {
|
||||
for (int el = 0; el < M1_INNER_ELEMENT_BATCH; ++el; @inner) {
|
||||
const int e = eOff + b*M1_INNER_ELEMENT_BATCH + el;
|
||||
if (e < numElements) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_out[qx] = 0;
|
||||
}
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double r_gf = gf[l2gMap(dx, e)];
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
r_out[qx] += r_gf * s_dofToQuad(qx, dx);
|
||||
}
|
||||
}
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
out(qx, e) = r_out[qx];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 2D ]-----------------------------
|
||||
@kernel void GridFuncToQuad2D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap2D_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QLocal2D_t restrict out) {
|
||||
// Iterate over elements
|
||||
for (int eOff = 0; eOff < numElements; eOff += M2_ELEMENT_BATCH; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
|
||||
// Store xy planes in shared memory
|
||||
@shared double s_xy[NUM_QUAD_DOFS_1D] @dim(NUM_DOFS_1D, NUM_QUAD_1D);
|
||||
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
for (int id = x; id < NUM_QUAD_DOFS_1D; id += NUM_MAX_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
}
|
||||
}
|
||||
|
||||
for (int e = eOff; e < (eOff + M2_ELEMENT_BATCH); ++e) {
|
||||
if (e < numElements) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if (dx < NUM_DOFS_1D) {
|
||||
double r_x[NUM_DOFS_1D];
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
r_x[dy] = gf[l2gMap(dx, dy, e)];
|
||||
}
|
||||
for (int qy = 0; qy < NUM_QUAD_1D; ++qy) {
|
||||
double xy = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
xy += r_x[dy] * s_dofToQuad(qy, dy);
|
||||
}
|
||||
s_xy(dx, qy) = xy;
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
if (qy < NUM_QUAD_1D) {
|
||||
for (int qx = 0; qx < NUM_QUAD_1D; ++qx) {
|
||||
double val = 0;
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
val += s_xy(dx, qy) * s_dofToQuad(qx, dx);
|
||||
}
|
||||
out(qx, qy, e) = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
|
||||
|
||||
//---[ 3D ]-----------------------------
|
||||
@kernel void GridFuncToQuad3D(const int numElements,
|
||||
const DofToQuad_t restrict dofToQuad,
|
||||
const DLocalMap3D_t restrict l2gMap,
|
||||
const double * restrict gf,
|
||||
QLocal3D_t restrict out) {
|
||||
// Iterate over elements
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
// Store dof <--> quad mappings
|
||||
@shared double s_dofToQuad[NUM_QUAD_DOFS_1D] @dim(NUM_QUAD_1D, NUM_DOFS_1D);
|
||||
|
||||
// Store xy planes in shared memory
|
||||
@shared double s_z[NUM_MAX_2D] @dim(NUM_MAX_1D, NUM_MAX_1D);
|
||||
|
||||
// Store z axis as registers
|
||||
@exclusive double r_qz[NUM_QUAD_1D];
|
||||
|
||||
for (int y = 0; y < NUM_MAX_1D; ++y; @inner) {
|
||||
for (int x = 0; x < NUM_MAX_1D; ++x; @inner) {
|
||||
const int id = (y * NUM_MAX_1D) + x;
|
||||
// Fetch Q <--> D maps
|
||||
if (id < NUM_QUAD_DOFS_1D) {
|
||||
s_dofToQuad[id] = dofToQuad[id];
|
||||
}
|
||||
// Initialize our Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_qz[qz] = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
for (int dz = 0; dz < NUM_DOFS_1D; ++dz) {
|
||||
const double val = gf[l2gMap(dx, dy, dz, e)];
|
||||
// Calculate D -> Q in the Z axis
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
r_qz[qz] += val * s_dofToQuad(qz, dz);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
// For each xy plane
|
||||
for (int qz = 0; qz < NUM_QUAD_1D; ++qz) {
|
||||
// Fill xy plane at given z position
|
||||
for (int dy = 0; dy < NUM_MAX_1D; ++dy; @inner) {
|
||||
for (int dx = 0; dx < NUM_MAX_1D; ++dx; @inner) {
|
||||
if ((dx < NUM_DOFS_1D) && (dy < NUM_DOFS_1D)) {
|
||||
s_z(dx, dy) = r_qz[qz];
|
||||
}
|
||||
}
|
||||
}
|
||||
// Calculate Dxyz, xDyz, xyDz in plane
|
||||
for (int qy = 0; qy < NUM_MAX_1D; ++qy; @inner) {
|
||||
for (int qx = 0; qx < NUM_MAX_1D; ++qx; @inner) {
|
||||
if ((qx < NUM_QUAD_1D) && (qy < NUM_QUAD_1D)) {
|
||||
double val = 0;
|
||||
for (int dy = 0; dy < NUM_DOFS_1D; ++dy) {
|
||||
const double wy = s_dofToQuad(qy, dy);
|
||||
for (int dx = 0; dx < NUM_DOFS_1D; ++dx) {
|
||||
const double wx = s_dofToQuad(qx, dx);
|
||||
val += wx * wy * s_z(dx, dy);
|
||||
}
|
||||
}
|
||||
out(qx, qy, qz, e) = val;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
//======================================
|
||||
@@ -0,0 +1,162 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "interpolation.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
void CreateRPOperators(Layout &v_layout, Layout &t_layout,
|
||||
const mfem::SparseMatrix *R, const mfem::Operator *P,
|
||||
mfem::Operator *&OccaR, mfem::Operator *&OccaP)
|
||||
{
|
||||
if (!P)
|
||||
{
|
||||
OccaR = new IdentityOperator(t_layout);
|
||||
OccaP = new IdentityOperator(t_layout);
|
||||
return;
|
||||
}
|
||||
|
||||
const mfem::SparseMatrix *pmat = dynamic_cast<const mfem::SparseMatrix*>(P);
|
||||
::occa::device device = v_layout.OccaEngine().GetDevice();
|
||||
|
||||
if (R)
|
||||
{
|
||||
OccaSparseMatrix *occaR =
|
||||
CreateMappedSparseMatrix(v_layout, t_layout, *R);
|
||||
::occa::array<int> reorderIndices = occaR->reorderIndices;
|
||||
delete occaR;
|
||||
|
||||
OccaR = new RestrictionOperator(v_layout, t_layout, reorderIndices);
|
||||
}
|
||||
|
||||
if (pmat)
|
||||
{
|
||||
const mfem::SparseMatrix *pmatT = Transpose(*pmat);
|
||||
|
||||
OccaSparseMatrix *occaP =
|
||||
CreateMappedSparseMatrix(t_layout, v_layout, *pmat);
|
||||
OccaSparseMatrix *occaPT =
|
||||
CreateMappedSparseMatrix(v_layout, t_layout, *pmatT);
|
||||
|
||||
OccaP = new ProlongationOperator(*occaP, *occaPT);
|
||||
}
|
||||
else
|
||||
{
|
||||
OccaP = new ProlongationOperator(t_layout, v_layout, P);
|
||||
}
|
||||
}
|
||||
|
||||
RestrictionOperator::RestrictionOperator(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> indices) :
|
||||
Operator(in_layout, out_layout)
|
||||
{
|
||||
|
||||
entries = indices.size() / 2;
|
||||
trueIndices = indices;
|
||||
|
||||
// FIXME: paths ...
|
||||
::occa::device device = in_layout.OccaEngine().GetDevice();
|
||||
const std::string &okl_path = in_layout.OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = in_layout.OccaEngine().GetOklDefines();
|
||||
multOp = device.buildKernel(okl_path + "mappings.okl",
|
||||
"ExtractSubVector",
|
||||
"defines: { TILESIZE: 256 }" + okl_defines);
|
||||
|
||||
multTransposeOp = device.buildKernel(okl_path + "mappings.okl",
|
||||
"SetSubVector",
|
||||
"defines: { TILESIZE: 256 }" +
|
||||
okl_defines);
|
||||
}
|
||||
|
||||
void RestrictionOperator::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
multOp(entries, trueIndices, x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
|
||||
void RestrictionOperator::MultTranspose_(const Vector &x, Vector &y) const
|
||||
{
|
||||
y.Fill<double>(0.0);
|
||||
multTransposeOp(entries, trueIndices, x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
|
||||
ProlongationOperator::ProlongationOperator(OccaSparseMatrix &multOp_,
|
||||
OccaSparseMatrix &multTransposeOp_) :
|
||||
Operator(multOp_),
|
||||
pmat(NULL),
|
||||
multOp(multOp_),
|
||||
multTransposeOp(multTransposeOp_) {}
|
||||
|
||||
ProlongationOperator::ProlongationOperator(Layout &in_layout,
|
||||
Layout &out_layout,
|
||||
const mfem::Operator *pmat_) :
|
||||
Operator(in_layout, out_layout),
|
||||
pmat(pmat_),
|
||||
multOp(*this),
|
||||
multTransposeOp(*this)
|
||||
{ }
|
||||
|
||||
void ProlongationOperator::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_VERIFY(pmat == NULL, "");
|
||||
multOp.Mult_(x, y);
|
||||
}
|
||||
|
||||
void ProlongationOperator::MultTranspose_(const Vector &x, Vector &y) const
|
||||
{
|
||||
MFEM_VERIFY(pmat == NULL, "");
|
||||
multTransposeOp.Mult_(x, y);
|
||||
}
|
||||
|
||||
void ProlongationOperator::Mult(const mfem::Vector &x, mfem::Vector &y) const
|
||||
{
|
||||
if (pmat)
|
||||
{
|
||||
// FIXME: create an OCCA version of 'pmat'
|
||||
x.Pull();
|
||||
y.Pull(false);
|
||||
pmat->Mult(x, y);
|
||||
y.Push();
|
||||
}
|
||||
else
|
||||
{
|
||||
multOp.Mult(x, y);
|
||||
}
|
||||
}
|
||||
|
||||
void ProlongationOperator::MultTranspose(const mfem::Vector &x,
|
||||
mfem::Vector &y) const
|
||||
{
|
||||
if (pmat)
|
||||
{
|
||||
// FIXME: create an OCCA version of 'pmat'
|
||||
x.Pull();
|
||||
y.Pull(false);
|
||||
pmat->MultTranspose(x, y);
|
||||
y.Push();
|
||||
}
|
||||
else
|
||||
{
|
||||
multTransposeOp.Mult(x, y);
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,79 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_INTERPOLATION_HPP
|
||||
#define MFEM_BACKENDS_OCCA_INTERPOLATION_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
#include "vector.hpp"
|
||||
#include "engine.hpp"
|
||||
#include "sparsemat.hpp"
|
||||
#include "../../fem/fem.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
// [MISSING] Proper destructors
|
||||
void CreateRPOperators(Layout &v_layout, Layout &t_layout,
|
||||
const mfem::SparseMatrix *R, const mfem::Operator *P,
|
||||
mfem::Operator *&OccaR, mfem::Operator *&OccaP);
|
||||
|
||||
class RestrictionOperator : public Operator
|
||||
{
|
||||
protected:
|
||||
int entries;
|
||||
::occa::array<int> trueIndices;
|
||||
::occa::kernel multOp, multTransposeOp;
|
||||
|
||||
public:
|
||||
RestrictionOperator(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> indices);
|
||||
|
||||
// overrides
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
virtual void MultTranspose_(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
class ProlongationOperator : public Operator
|
||||
{
|
||||
protected:
|
||||
const mfem::Operator *pmat;
|
||||
OccaSparseMatrix multOp, multTransposeOp;
|
||||
|
||||
public:
|
||||
ProlongationOperator(OccaSparseMatrix &multOp_,
|
||||
OccaSparseMatrix &multTransposeOp_);
|
||||
|
||||
ProlongationOperator(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::Operator *pmat_);
|
||||
|
||||
// overrides
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
virtual void MultTranspose_(const Vector &x, Vector &y) const;
|
||||
|
||||
// overrides
|
||||
virtual void Mult(const mfem::Vector &x, mfem::Vector &y) const;
|
||||
virtual void MultTranspose(const mfem::Vector &x, mfem::Vector &y) const;
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_INTERPOLATION_HPP
|
||||
@@ -0,0 +1,40 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "layout.hpp"
|
||||
#include "../../general/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
void Layout::Resize(std::size_t new_size)
|
||||
{
|
||||
size = new_size;
|
||||
}
|
||||
|
||||
void Layout::Resize(const Array<std::size_t> &offsets)
|
||||
{
|
||||
MFEM_ASSERT(offsets.Size() == 2,
|
||||
"multiple workers are not supported yet");
|
||||
size = offsets.Last();
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,68 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_LAYOUT_HPP
|
||||
#define MFEM_BACKENDS_OCCA_LAYOUT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "../base/layout.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Layout : public PLayout
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// std::size_t size;
|
||||
|
||||
public:
|
||||
Layout(const Engine &e, std::size_t s = 0) : PLayout(e, s) { }
|
||||
|
||||
const Engine &OccaEngine() const
|
||||
{ return *static_cast<const Engine *>(engine.Get()); }
|
||||
|
||||
::occa::memory Alloc(std::size_t bytes) const
|
||||
{ return OccaEngine().GetDevice().malloc(bytes); }
|
||||
|
||||
virtual ~Layout() { }
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
/// Resize the layout
|
||||
virtual void Resize(std::size_t new_size);
|
||||
|
||||
/// Resize the layout based on the given worker offsets
|
||||
virtual void Resize(const Array<std::size_t> &offsets);
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_LAYOUT_HPP
|
||||
@@ -0,0 +1,54 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
TILESIZE : Tilesize for iterating over entries
|
||||
================================================
|
||||
*/
|
||||
|
||||
@kernel void ExtractSubVector(const int entries,
|
||||
const int * restrict indices,
|
||||
const double * restrict in,
|
||||
double * restrict out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
out[i] = in[indices[i]];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void SetSubVector(const int entries,
|
||||
const int * restrict indices,
|
||||
const double * restrict in,
|
||||
double * restrict out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
out[indices[i]] = in[i];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MapSubVector(const int entries,
|
||||
const int * restrict indices,
|
||||
const double * restrict in,
|
||||
double * restrict out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
const int fromIdx = indices[2*i + 0];
|
||||
const int toIdx = indices[2*i + 1];
|
||||
out[toIdx] = in[fromIdx];
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,135 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "operator.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
// FIXME: move this object to the Backend?
|
||||
::occa::kernelBuilder OccaConstrainedOperator::mapDofBuilder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"vector_map_dofs",
|
||||
|
||||
"const int idx = v2[i];"
|
||||
"v0[idx] = v1[idx];",
|
||||
|
||||
"defines: {"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" VTYPE2: 'int',"
|
||||
" TILESIZE: 128,"
|
||||
"}");
|
||||
|
||||
// FIXME: move this object to the Backend?
|
||||
::occa::kernelBuilder OccaConstrainedOperator::clearDofBuilder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"vector_clear_dofs",
|
||||
|
||||
"v0[v1[i]] = 0.0;",
|
||||
|
||||
"defines: {"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'int',"
|
||||
" TILESIZE: 128,"
|
||||
"}");
|
||||
|
||||
OccaConstrainedOperator::OccaConstrainedOperator(
|
||||
mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraintList_,
|
||||
bool own_A_)
|
||||
|
||||
: Operator(A_->InLayout()->As<Layout>()),
|
||||
z(OutLayout_()),
|
||||
w(OutLayout_()),
|
||||
mfem_z((z.DontDelete(), z)),
|
||||
mfem_w((w.DontDelete(), w))
|
||||
{
|
||||
Setup(OutLayout_().OccaEngine().GetDevice(), A_, constraintList_, own_A_);
|
||||
}
|
||||
|
||||
void OccaConstrainedOperator::Setup(::occa::device device_,
|
||||
mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraintList_,
|
||||
bool own_A_)
|
||||
{
|
||||
device = device_;
|
||||
|
||||
A = A_;
|
||||
own_A = own_A_;
|
||||
|
||||
constraintIndices = constraintList_.Size();
|
||||
constraintList = constraintList_.Get_PArray()->As<Array>().OccaMem();
|
||||
}
|
||||
|
||||
void OccaConstrainedOperator::EliminateRHS(const Vector &x, Vector &b) const
|
||||
{
|
||||
const std::string &okl_defines = InLayout_().OccaEngine().GetOklDefines();
|
||||
::occa::kernel mapDofs = mapDofBuilder.build(device, okl_defines);
|
||||
|
||||
w.Fill<double>(0.0);
|
||||
|
||||
if (constraintIndices)
|
||||
{
|
||||
mapDofs(constraintIndices, w.OccaMem(), x.OccaMem(), constraintList);
|
||||
}
|
||||
|
||||
A->Mult(mfem_w, mfem_z);
|
||||
|
||||
b.Axpby<double>(1.0, b, -1.0, z);
|
||||
|
||||
if (constraintIndices)
|
||||
{
|
||||
mapDofs(constraintIndices, b.OccaMem(), x.OccaMem(), constraintList);
|
||||
}
|
||||
}
|
||||
|
||||
void OccaConstrainedOperator::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
mfem::Vector mfem_y(y);
|
||||
if (constraintIndices == 0)
|
||||
{
|
||||
A->Mult(x.Wrap(), mfem_y);
|
||||
return;
|
||||
}
|
||||
|
||||
const std::string &okl_defines = InLayout_().OccaEngine().GetOklDefines();
|
||||
::occa::kernel mapDofs = mapDofBuilder.build(device, okl_defines);
|
||||
::occa::kernel clearDofs = clearDofBuilder.build(device, okl_defines);
|
||||
|
||||
z.Assign<double>(x); // z = x
|
||||
|
||||
clearDofs(constraintIndices, z.OccaMem(), constraintList);
|
||||
|
||||
A->Mult(mfem_z, mfem_y);
|
||||
|
||||
mapDofs(constraintIndices, y.OccaMem(), x.OccaMem(), constraintList);
|
||||
}
|
||||
|
||||
OccaConstrainedOperator::~OccaConstrainedOperator()
|
||||
{
|
||||
if (own_A)
|
||||
{
|
||||
delete A;
|
||||
}
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,129 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_OPERATOR_HPP
|
||||
#define MFEM_BACKENDS_OCCA_OPERATOR_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "../../linalg/operator.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Operator : public mfem::Operator
|
||||
{
|
||||
public:
|
||||
/// Creare an operator with the same dimensions as @a orig.
|
||||
Operator(const Operator &orig)
|
||||
: mfem::Operator(orig) { }
|
||||
|
||||
Operator(Layout &layout)
|
||||
: mfem::Operator(layout) { }
|
||||
|
||||
Operator(Layout &in_layout, Layout &out_layout)
|
||||
: mfem::Operator(in_layout, out_layout) { }
|
||||
|
||||
Layout &InLayout_() const
|
||||
{ return *static_cast<Layout*>(in_layout.Get()); }
|
||||
|
||||
Layout &OutLayout_() const
|
||||
{ return *static_cast<Layout*>(out_layout.Get()); }
|
||||
|
||||
virtual void Mult_(const Vector &x, Vector &y) const = 0;
|
||||
|
||||
virtual void MultTranspose_(const Vector &x, Vector &y) const
|
||||
{ MFEM_ABORT("method is not supported"); }
|
||||
|
||||
// override
|
||||
virtual void Mult(const mfem::Vector &x, mfem::Vector &y) const
|
||||
{
|
||||
Mult_(x.Get_PVector()->As<Vector>(),
|
||||
y.Get_PVector()->As<Vector>());
|
||||
}
|
||||
|
||||
// override
|
||||
virtual void MultTranspose(const mfem::Vector &x, mfem::Vector &y) const
|
||||
{
|
||||
MultTranspose_(x.Get_PVector()->As<Vector>(),
|
||||
y.Get_PVector()->As<Vector>());
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
class OccaConstrainedOperator : public Operator
|
||||
{
|
||||
protected:
|
||||
::occa::device device;
|
||||
|
||||
mfem::Operator *A; //< The unconstrained Operator.
|
||||
bool own_A; //< Ownership flag for A.
|
||||
::occa::memory constraintList; //< List of constrained indices/dofs.
|
||||
int constraintIndices;
|
||||
mutable Vector z, w; //< Auxiliary vectors.
|
||||
mutable mfem::Vector mfem_z, mfem_w; // Wrap z, w
|
||||
|
||||
static ::occa::kernelBuilder mapDofBuilder, clearDofBuilder;
|
||||
|
||||
public:
|
||||
/** @brief Constructor from a general Operator and a list of essential
|
||||
indices/dofs.
|
||||
|
||||
Specify the unconstrained operator @a *A and a @a list of indices to
|
||||
constrain, i.e. each entry @a list[i] represents an essential-dof. If the
|
||||
ownership flag @a own_A is true, the operator @a *A will be destroyed
|
||||
when this object is destroyed. */
|
||||
OccaConstrainedOperator(mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraintList_,
|
||||
bool own_A_ = false);
|
||||
|
||||
void Setup(::occa::device device_,
|
||||
mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraintList_,
|
||||
bool own_A_ = false);
|
||||
|
||||
/** @brief Eliminate "essential boundary condition" values specified in @a x
|
||||
from the given right-hand side @a b.
|
||||
|
||||
Performs the following steps:
|
||||
|
||||
z = A((0,x_b)); b_i -= z_i; b_b = x_b;
|
||||
|
||||
where the "_b" subscripts denote the essential (boundary) indices/dofs of
|
||||
the vectors, and "_i" -- the rest of the entries. */
|
||||
void EliminateRHS(const Vector &x, Vector &b) const;
|
||||
|
||||
/** @brief Constrained operator action.
|
||||
|
||||
Performs the following steps:
|
||||
|
||||
z = A((x_i,0)); y_i = z_i; y_b = x_b;
|
||||
|
||||
where the "_b" subscripts denote the essential (boundary) indices/dofs of
|
||||
the vectors, and "_i" -- the rest of the entries. */
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
|
||||
// Destructor: destroys the unconstrained Operator @a A if @a own_A is true.
|
||||
virtual ~OccaConstrainedOperator();
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_OPERATOR_HPP
|
||||
@@ -0,0 +1,57 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
/*
|
||||
---[ Defines Known At Compile-Time ]------------
|
||||
TILESIZE : Tilesize for iterating over dofs
|
||||
================================================
|
||||
*/
|
||||
|
||||
@kernel void Mult(const int entries,
|
||||
const int * restrict offsets,
|
||||
const int * restrict indices,
|
||||
const double * restrict weights,
|
||||
const double * restrict in,
|
||||
double * restrict out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
const int offset = offsets[i];
|
||||
const int nextOffset = offsets[i + 1];
|
||||
double value = 0;
|
||||
for (int j = offset; j < nextOffset; ++j) {
|
||||
value += weights[j] * in[indices[j]];
|
||||
}
|
||||
out[i] = value;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@kernel void MappedMult(const int entries,
|
||||
const int * restrict offsets,
|
||||
const int * restrict indices,
|
||||
const double * restrict weights,
|
||||
const int * restrict outIndices,
|
||||
const double * restrict in,
|
||||
double * restrict out) {
|
||||
|
||||
for (int i = 0; i < entries; ++i; @tile(TILESIZE, @outer, @inner)) {
|
||||
if (i < entries) {
|
||||
const int offset = offsets[i];
|
||||
const int nextOffset = offsets[i + 1];
|
||||
double value = 0;
|
||||
for (int j = offset; j < nextOffset; ++j) {
|
||||
value += weights[j] * in[indices[j]];
|
||||
}
|
||||
out[outIndices[i]] = value;
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,248 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "sparsemat.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
OccaSparseMatrix::OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props) :
|
||||
Operator(in_layout, out_layout)
|
||||
{
|
||||
|
||||
Setup(in_layout.OccaEngine().GetDevice(), m, props);
|
||||
}
|
||||
|
||||
OccaSparseMatrix::OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props) :
|
||||
Operator(in_layout, out_layout)
|
||||
{
|
||||
|
||||
Setup(in_layout.OccaEngine().GetDevice(), m,
|
||||
reorderIndices, mappedIndices_, props);
|
||||
}
|
||||
|
||||
OccaSparseMatrix::OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> offsets_,
|
||||
::occa::array<int> indices_,
|
||||
::occa::array<double> weights_,
|
||||
const ::occa::properties &props) :
|
||||
Operator(in_layout, out_layout),
|
||||
offsets(offsets_),
|
||||
indices(indices_),
|
||||
weights(weights_)
|
||||
{
|
||||
|
||||
SetupKernel(in_layout.OccaEngine().GetDevice(), props);
|
||||
}
|
||||
|
||||
OccaSparseMatrix::OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> offsets_,
|
||||
::occa::array<int> indices_,
|
||||
::occa::array<double> weights_,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props) :
|
||||
Operator(in_layout, out_layout),
|
||||
offsets(offsets_),
|
||||
indices(indices_),
|
||||
weights(weights_),
|
||||
reorderIndices(reorderIndices_),
|
||||
mappedIndices(mappedIndices_)
|
||||
{
|
||||
|
||||
SetupKernel(in_layout.OccaEngine().GetDevice(), props);
|
||||
}
|
||||
|
||||
void OccaSparseMatrix::Setup(::occa::device device, const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
Setup(device, m, ::occa::array<int>(), ::occa::array<int>(), props);
|
||||
}
|
||||
|
||||
void OccaSparseMatrix::Setup(::occa::device device, const SparseMatrix &m,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
|
||||
const int nnz = m.GetI()[height];
|
||||
offsets.allocate(device,
|
||||
height + 1, m.GetI());
|
||||
indices.allocate(device,
|
||||
nnz, m.GetJ());
|
||||
weights.allocate(device,
|
||||
nnz, m.GetData());
|
||||
|
||||
offsets.keepInDevice();
|
||||
indices.keepInDevice();
|
||||
weights.keepInDevice();
|
||||
|
||||
reorderIndices = reorderIndices_;
|
||||
mappedIndices = mappedIndices_;
|
||||
|
||||
SetupKernel(device, props);
|
||||
}
|
||||
|
||||
void OccaSparseMatrix::SetupKernel(::occa::device device,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
|
||||
const bool hasOutIndices = mappedIndices.isInitialized();
|
||||
|
||||
const ::occa::properties defaultProps("defines: {"
|
||||
" TILESIZE: 256,"
|
||||
"}");
|
||||
|
||||
const std::string &okl_path = InLayout_().OccaEngine().GetOklPath();
|
||||
const std::string &okl_defines = InLayout_().OccaEngine().GetOklDefines();
|
||||
mapKernel = device.buildKernel(okl_path + "mappings.okl",
|
||||
"MapSubVector",
|
||||
defaultProps + props + okl_defines);
|
||||
|
||||
multKernel = device.buildKernel(okl_path + "sparse.okl",
|
||||
hasOutIndices ? "MappedMult" : "Mult",
|
||||
defaultProps + props + okl_defines);
|
||||
}
|
||||
|
||||
void OccaSparseMatrix::Mult_(const Vector &x, Vector &y) const
|
||||
{
|
||||
if (reorderIndices.isInitialized() ||
|
||||
mappedIndices.isInitialized())
|
||||
{
|
||||
if (reorderIndices.isInitialized())
|
||||
{
|
||||
mapKernel((int) (reorderIndices.size() / 2),
|
||||
reorderIndices,
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
if (mappedIndices.isInitialized())
|
||||
{
|
||||
multKernel((int) (mappedIndices.size()),
|
||||
offsets, indices, weights,
|
||||
mappedIndices,
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
multKernel((int) height,
|
||||
offsets, indices, weights,
|
||||
x.OccaMem(), y.OccaMem());
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
OccaSparseMatrix* CreateMappedSparseMatrix(Layout &in_layout,
|
||||
Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props)
|
||||
{
|
||||
const int mHeight = m.Height();
|
||||
// const int mWidth = m.Width();
|
||||
|
||||
// Count indices that are only reordered (true dofs)
|
||||
const int *I = m.GetI();
|
||||
const int *J = m.GetJ();
|
||||
const double *D = m.GetData();
|
||||
|
||||
int trueCount = 0;
|
||||
for (int i = 0; i < mHeight; ++i)
|
||||
{
|
||||
trueCount += ((I[i + 1] - I[i]) == 1);
|
||||
}
|
||||
const int dupCount = (mHeight - trueCount);
|
||||
|
||||
// Create the reordering map for entries that aren't modified (true dofs)
|
||||
::occa::device device(in_layout.OccaEngine().GetDevice());
|
||||
::occa::array<int> reorderIndices(device,
|
||||
2 * trueCount);
|
||||
::occa::array<int> mappedIndices, offsets, indices;
|
||||
::occa::array<double> weights;
|
||||
|
||||
if (dupCount)
|
||||
{
|
||||
mappedIndices.allocate(device,
|
||||
dupCount);
|
||||
}
|
||||
int trueIdx = 0, dupIdx = 0;
|
||||
for (int i = 0; i < mHeight; ++i)
|
||||
{
|
||||
const int i1 = I[i];
|
||||
if ((I[i + 1] - i1) == 1)
|
||||
{
|
||||
reorderIndices[trueIdx++] = J[i1];
|
||||
reorderIndices[trueIdx++] = i;
|
||||
}
|
||||
else
|
||||
{
|
||||
mappedIndices[dupIdx++] = i;
|
||||
}
|
||||
}
|
||||
reorderIndices.keepInDevice();
|
||||
|
||||
if (dupCount)
|
||||
{
|
||||
mappedIndices.keepInDevice();
|
||||
|
||||
// Extract sparse matrix without reordered identity
|
||||
const int dupNnz = I[mHeight] - trueCount;
|
||||
|
||||
offsets.allocate(device,
|
||||
dupCount + 1);
|
||||
indices.allocate(device,
|
||||
dupNnz);
|
||||
weights.allocate(device,
|
||||
dupNnz);
|
||||
|
||||
int nnz = 0;
|
||||
offsets[0] = 0;
|
||||
for (int i = 0; i < dupCount; ++i)
|
||||
{
|
||||
const int idx = mappedIndices[i];
|
||||
const int offStart = I[idx];
|
||||
const int offEnd = I[idx + 1];
|
||||
offsets[i + 1] = offsets[i] + (offEnd - offStart);
|
||||
for (int j = offStart; j < offEnd; ++j)
|
||||
{
|
||||
indices[nnz] = J[j];
|
||||
weights[nnz] = D[j];
|
||||
++nnz;
|
||||
}
|
||||
}
|
||||
|
||||
offsets.keepInDevice();
|
||||
indices.keepInDevice();
|
||||
weights.keepInDevice();
|
||||
}
|
||||
|
||||
return new OccaSparseMatrix(in_layout, out_layout,
|
||||
offsets, indices, weights,
|
||||
reorderIndices, mappedIndices,
|
||||
props);
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,95 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_SPARSE_MAT_HPP
|
||||
#define MFEM_BACKENDS_OCCA_SPARSE_MAT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
#include "vector.hpp"
|
||||
#include "engine.hpp"
|
||||
#include "operator.hpp"
|
||||
#include "../../linalg/sparsemat.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
/// TODO: doxygen
|
||||
class OccaSparseMatrix : public Operator
|
||||
{
|
||||
public:
|
||||
::occa::array<int> offsets, indices;
|
||||
::occa::array<double> weights;
|
||||
::occa::array<int> reorderIndices, mappedIndices;
|
||||
::occa::kernel mapKernel, multKernel;
|
||||
|
||||
/// Construct an empty OccaSparseMatrix.
|
||||
OccaSparseMatrix(const Operator &orig)
|
||||
: Operator(orig) { }
|
||||
|
||||
OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props = ::occa::properties());
|
||||
|
||||
OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props = ::occa::properties());
|
||||
|
||||
OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> offsets_,
|
||||
::occa::array<int> indices_,
|
||||
::occa::array<double> weights_,
|
||||
const ::occa::properties &props = ::occa::properties());
|
||||
|
||||
OccaSparseMatrix(Layout &in_layout, Layout &out_layout,
|
||||
::occa::array<int> offsets_,
|
||||
::occa::array<int> indices_,
|
||||
::occa::array<double> weights_,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props = ::occa::properties());
|
||||
|
||||
void Setup(::occa::device device, const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props);
|
||||
|
||||
void Setup(::occa::device device, const mfem::SparseMatrix &m,
|
||||
::occa::array<int> reorderIndices_,
|
||||
::occa::array<int> mappedIndices_,
|
||||
const ::occa::properties &props);
|
||||
|
||||
void SetupKernel(::occa::device device,
|
||||
const ::occa::properties &props);
|
||||
|
||||
// override
|
||||
virtual void Mult_(const Vector &x, Vector &y) const;
|
||||
};
|
||||
|
||||
|
||||
/// TODO: doxygen
|
||||
OccaSparseMatrix* CreateMappedSparseMatrix(
|
||||
Layout &in_layout, Layout &out_layout,
|
||||
const mfem::SparseMatrix &m,
|
||||
const ::occa::properties &props = ::occa::properties());
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_SPARSE_MAT_HPP
|
||||
@@ -0,0 +1,81 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "url_handler.hpp"
|
||||
#include "../../general/error.hpp"
|
||||
#include <cstdlib>
|
||||
#include <sys/stat.h>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
FileOpener::FileOpener(const std::string &prefix,
|
||||
const std::string &env_variable)
|
||||
: pfx(prefix)
|
||||
{
|
||||
const char *env_path = getenv(env_variable.c_str());
|
||||
if (!env_path) { return; }
|
||||
std::string path(env_path);
|
||||
for (std::size_t start = 0, end; start < path.size(); start = end + 1)
|
||||
{
|
||||
end = path.find(':', start);
|
||||
if (end == std::string::npos)
|
||||
{
|
||||
AddDir(path.substr(start, end));
|
||||
break;
|
||||
}
|
||||
AddDir(path.substr(start, end - start));
|
||||
}
|
||||
}
|
||||
|
||||
bool FileOpener::AddDir(const std::string &dir)
|
||||
{
|
||||
if (dir.size() == 0 || dir[0] != '/') { return false; }
|
||||
struct stat dir_stat;
|
||||
if (stat(dir.c_str(), &dir_stat)) { return false; }
|
||||
if (!S_ISDIR(dir_stat.st_mode)) { return false; }
|
||||
paths.push_back(dir + (*dir.rbegin() == '/' ? "" : "/"));
|
||||
return true;
|
||||
}
|
||||
|
||||
bool FileOpener::handles(const std::string &filename)
|
||||
{
|
||||
return filename.size() >= pfx.size() &&
|
||||
filename.compare(0, pfx.size(), pfx) == 0;
|
||||
}
|
||||
|
||||
std::string FileOpener::expand(const std::string &filename)
|
||||
{
|
||||
std::string sfx(filename.substr(pfx.size()));
|
||||
for (std::size_t i = 0; i < paths.size(); i++)
|
||||
{
|
||||
std::string file = paths[i] + sfx;
|
||||
struct stat file_stat;
|
||||
if (stat(file.c_str(), &file_stat) == 0 && S_ISREG(file_stat.st_mode))
|
||||
{
|
||||
return file;
|
||||
}
|
||||
}
|
||||
MFEM_ABORT("invalid url: " << filename);
|
||||
return sfx;
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,47 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_URL_HANDLER_HPP
|
||||
#define MFEM_BACKENDS_OCCA_URL_HANDLER_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class FileOpener : public ::occa::io::fileOpener
|
||||
{
|
||||
protected:
|
||||
std::string pfx; // prefix, e.g. "mfem://"
|
||||
std::vector<std::string> paths; // paths to search for prefix replacement
|
||||
|
||||
public:
|
||||
FileOpener(const std::string &prefix, const std::string &env_variable);
|
||||
|
||||
bool AddDir(const std::string &dir);
|
||||
|
||||
virtual bool handles(const std::string &filename);
|
||||
virtual std::string expand(const std::string &filename);
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_URL_HANDLER_HPP
|
||||
@@ -0,0 +1,22 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
typedef double* Local_t @dim(numDofs, numElements);
|
||||
|
||||
@kernel void InitLocalVector(const int numElements,
|
||||
const int numDofs,
|
||||
Local_t restrict sol) {
|
||||
for (int e = 0; e < numElements; ++e; @outer) {
|
||||
for (int d = 0; d < numDofs; ++d; @inner) {
|
||||
sol(d, e) = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,204 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "../../linalg/vector.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
PVector *Vector::DoVectorClone(bool copy_data, void **buffer,
|
||||
int buffer_type_id) const
|
||||
{
|
||||
MFEM_ASSERT(buffer_type_id == ScalarId<double>::value, "");
|
||||
Vector *new_vector = new Vector(OccaLayout());
|
||||
if (copy_data)
|
||||
{
|
||||
new_vector->slice.copyFrom(slice);
|
||||
}
|
||||
if (buffer)
|
||||
{
|
||||
*buffer = new_vector->GetBuffer();
|
||||
}
|
||||
return new_vector;
|
||||
}
|
||||
|
||||
void Vector::DoDotProduct(const PVector &x, void *result,
|
||||
int result_type_id) const
|
||||
{
|
||||
// Can be called when Size() == 0, e.g. when an MPI-parallel vector has a
|
||||
// local size of 0.
|
||||
|
||||
MFEM_ASSERT(result_type_id == ScalarId<double>::value, "");
|
||||
double *res = (double *)result;
|
||||
MFEM_ASSERT(dynamic_cast<const Vector *>(&x) != NULL, "invalid Vector type");
|
||||
const Vector *xp = static_cast<const Vector *>(&x);
|
||||
MFEM_ASSERT(this->Size() == xp->Size(), "");
|
||||
*res = ::occa::linalg::dot<double, double, double>(this->slice, xp->slice);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
double local_dot = *res;
|
||||
if (IsParallel())
|
||||
{
|
||||
MPI_Allreduce(&local_dot, res, 1, MPI_DOUBLE, MPI_SUM,
|
||||
OccaLayout().OccaEngine().GetComm());
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
void Vector::DoAxpby(const void *a, const PVector &x,
|
||||
const void *b, const PVector &y,
|
||||
int ab_type_id)
|
||||
{
|
||||
const std::string &okl_defines = OccaLayout().OccaEngine().GetOklDefines();
|
||||
|
||||
//
|
||||
// TODO: move all kernel builders to class mfem::occa::Backend
|
||||
//
|
||||
static ::occa::kernelBuilder axpby1_builder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"mfem_occa_axpby1",
|
||||
"v0[i] = c0 * v1[i];",
|
||||
"defines: {"
|
||||
" CTYPE0: 'double',"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" TILESIZE: '128',"
|
||||
"}");
|
||||
|
||||
static ::occa::kernelBuilder axpby2_builder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"mfem_occa_axpby2",
|
||||
"v0[i] = c0 * v0[i] + c1 * v1[i];",
|
||||
"defines: {"
|
||||
" CTYPE0: 'double',"
|
||||
" CTYPE1: 'double',"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" TILESIZE: '128',"
|
||||
"}");
|
||||
|
||||
static ::occa::kernelBuilder axpby3_builder =
|
||||
::occa::linalg::customLinearMethod(
|
||||
"mfem_occa_axpby3",
|
||||
"v0[i] = c0 * v1[i] + c1 * v2[i];",
|
||||
"defines: {"
|
||||
" CTYPE0: 'double',"
|
||||
" CTYPE1: 'double',"
|
||||
" VTYPE0: 'double',"
|
||||
" VTYPE1: 'double',"
|
||||
" VTYPE2: 'double',"
|
||||
" TILESIZE: '128',"
|
||||
"}");
|
||||
|
||||
// called only when Size() != 0
|
||||
|
||||
MFEM_ASSERT(ab_type_id == ScalarId<double>::value, "");
|
||||
const double da = *static_cast<const double *>(a);
|
||||
const double db = *static_cast<const double *>(b);
|
||||
MFEM_ASSERT(da == 0.0 || dynamic_cast<const Vector *>(&x) != NULL,
|
||||
"invalid Vector x");
|
||||
MFEM_ASSERT(db == 0.0 || dynamic_cast<const Vector *>(&y) != NULL,
|
||||
"invalid Vector y");
|
||||
const Vector *xp = static_cast<const Vector *>(&x);
|
||||
const Vector *yp = static_cast<const Vector *>(&y);
|
||||
|
||||
MFEM_ASSERT(da == 0.0 || this->Size() == xp->Size(), "");
|
||||
MFEM_ASSERT(db == 0.0 || this->Size() == yp->Size(), "");
|
||||
|
||||
if (da == 0.0)
|
||||
{
|
||||
if (db == 0.0)
|
||||
{
|
||||
OccaFill(&da);
|
||||
}
|
||||
else
|
||||
{
|
||||
if (this->slice == yp->slice)
|
||||
{
|
||||
// *this *= db
|
||||
::occa::linalg::operator_mult_eq(slice, db);
|
||||
}
|
||||
else
|
||||
{
|
||||
// *this = db * y
|
||||
::occa::kernel kernel = axpby1_builder.build(slice.getDevice(),
|
||||
okl_defines);
|
||||
kernel((int)Size(), db, slice, yp->slice);
|
||||
}
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
if (db == 0.0)
|
||||
{
|
||||
if (this->slice == xp->slice)
|
||||
{
|
||||
// *this *= da
|
||||
::occa::linalg::operator_mult_eq(slice, da);
|
||||
}
|
||||
else
|
||||
{
|
||||
// *this = da * x
|
||||
::occa::kernel kernel = axpby1_builder.build(slice.getDevice(),
|
||||
okl_defines);
|
||||
kernel((int)Size(), da, slice, xp->slice);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ASSERT(xp->slice != yp->slice, "invalid input");
|
||||
if (this->slice == xp->slice)
|
||||
{
|
||||
// *this = da * (*this) + db * y
|
||||
::occa::kernel kernel = axpby2_builder.build(slice.getDevice(),
|
||||
okl_defines);
|
||||
kernel((int)Size(), da, db, slice, yp->slice);
|
||||
}
|
||||
else if (this->slice == yp->slice)
|
||||
{
|
||||
// *this = da * x + db * (*this)
|
||||
::occa::kernel kernel = axpby2_builder.build(slice.getDevice(),
|
||||
okl_defines);
|
||||
kernel((int)Size(), db, da, slice, xp->slice);
|
||||
}
|
||||
else
|
||||
{
|
||||
// *this = da * x + db * y
|
||||
::occa::kernel kernel = axpby3_builder.build(slice.getDevice(),
|
||||
okl_defines);
|
||||
kernel((int)Size(), da, db, slice, xp->slice, yp->slice);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
mfem::Vector Vector::Wrap()
|
||||
{
|
||||
return mfem::Vector(*this);
|
||||
}
|
||||
|
||||
const mfem::Vector Vector::Wrap() const
|
||||
{
|
||||
return mfem::Vector(*const_cast<Vector*>(this));
|
||||
}
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
@@ -0,0 +1,74 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_OCCA_VECTOR_HPP
|
||||
#define MFEM_BACKENDS_OCCA_VECTOR_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include <occa.hpp>
|
||||
#include "../base/vector.hpp"
|
||||
#include "array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace occa
|
||||
{
|
||||
|
||||
class Vector : virtual public Array, public PVector
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// DLayout layout;
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
virtual PVector *DoVectorClone(bool copy_data, void **buffer,
|
||||
int buffer_type_id) const;
|
||||
|
||||
virtual void DoDotProduct(const PVector &x, void *result,
|
||||
int result_type_id) const;
|
||||
|
||||
virtual void DoAxpby(const void *a, const PVector &x,
|
||||
const void *b, const PVector &y,
|
||||
int ab_type_id);
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
|
||||
public:
|
||||
Vector(Layout <)
|
||||
: PArray(lt), Array(lt, sizeof(double)), PVector(lt)
|
||||
{ }
|
||||
|
||||
mfem::Vector Wrap();
|
||||
|
||||
const mfem::Vector Wrap() const;
|
||||
|
||||
#if defined(MFEM_USE_MPI)
|
||||
bool IsParallel() const { return (OccaLayout().OccaEngine().GetComm() != MPI_COMM_NULL); }
|
||||
#endif
|
||||
};
|
||||
|
||||
} // namespace mfem::occa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#endif // MFEM_BACKENDS_OCCA_VECTOR_HPP
|
||||
@@ -0,0 +1,87 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#include "array.hpp"
|
||||
#include <cstring>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
////////////
|
||||
// CpuArray
|
||||
|
||||
Array *Array::DoClone(bool copy_data, void **buffer,
|
||||
std::size_t item_size) const
|
||||
{
|
||||
Layout& lay = dynamic_cast<Layout&>(*layout);
|
||||
Array *new_array = new Array(lay, item_size);
|
||||
if (copy_data)
|
||||
{
|
||||
memcpy(new_array->data, data, size);
|
||||
}
|
||||
if (buffer)
|
||||
{
|
||||
*buffer = new_array->data;
|
||||
}
|
||||
return new_array;
|
||||
}
|
||||
|
||||
int Array::DoResize(PLayout &new_layout, void **buffer,
|
||||
std::size_t item_size)
|
||||
{
|
||||
Layout *lt = static_cast<Layout *>(&new_layout);
|
||||
layout.Reset(lt); // Reset() checks if the pointer is the same
|
||||
int err = ResizeData(lt, item_size);
|
||||
if (!err && buffer)
|
||||
{
|
||||
*buffer = this->data;
|
||||
}
|
||||
return err;
|
||||
}
|
||||
|
||||
void* Array::DoPullData(void *buffer, std::size_t item_size)
|
||||
{
|
||||
//Always on host
|
||||
return data;
|
||||
}
|
||||
|
||||
void Array::DoFill(const void *value_ptr, std::size_t item_size)
|
||||
{
|
||||
char* this_data = GetTypedData<char>();
|
||||
for (std::size_t i = 0; i < size; i += item_size)
|
||||
{
|
||||
memcpy(this_data + i, value_ptr, item_size);
|
||||
}
|
||||
}
|
||||
|
||||
void Array::DoPushData(const void *src_buffer, std::size_t item_size)
|
||||
{
|
||||
if (src_buffer) memcpy(data, src_buffer, size);
|
||||
}
|
||||
|
||||
void Array::DoAssign(const PArray &src, std::size_t item_size)
|
||||
{
|
||||
// called only when Size() != 0
|
||||
const Array* src_array = dynamic_cast<const Array*>(&src);
|
||||
memcpy(data, src_array->data, size);
|
||||
}
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
@@ -0,0 +1,112 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_PA_ARRAY_HPP
|
||||
#define MFEM_BACKENDS_PA_ARRAY_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#include "layout.hpp"
|
||||
#include "../base/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
/**
|
||||
* Simple cpu backend array
|
||||
*/
|
||||
class Array : public virtual PArray
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// DLayout layout;
|
||||
|
||||
void* data;
|
||||
std::size_t size;
|
||||
|
||||
//
|
||||
// Virtual interface
|
||||
//
|
||||
|
||||
virtual Array* DoClone(bool copy_data, void **buffer,
|
||||
std::size_t item_size) const;
|
||||
|
||||
virtual int DoResize(PLayout &new_layout, void **buffer,
|
||||
std::size_t item_size);
|
||||
|
||||
virtual void* DoPullData(void *buffer, std::size_t item_size);
|
||||
|
||||
virtual void DoFill(const void *value_ptr, std::size_t item_size);
|
||||
|
||||
virtual void DoPushData(const void *src_buffer, std::size_t item_size);
|
||||
|
||||
virtual void DoAssign(const PArray &src, std::size_t item_size);
|
||||
|
||||
//
|
||||
// Auxiliary methods
|
||||
//
|
||||
|
||||
inline int ResizeData(const Layout *lt, std::size_t item_size);
|
||||
|
||||
public:
|
||||
Array(Layout <, std::size_t item_size)
|
||||
: PArray(lt),
|
||||
data(lt.Alloc(lt.Size() * item_size)),
|
||||
size(lt.Size() * item_size)
|
||||
{ }
|
||||
|
||||
virtual ~Array() { delete [] static_cast<char*>(data); }
|
||||
|
||||
/**
|
||||
* An unsafe way to access the data, tries to provide a semblance of type safety.
|
||||
*/
|
||||
template <typename T>
|
||||
T* GetTypedData() { return static_cast<T*>(data); }
|
||||
|
||||
template <typename T>
|
||||
const T* GetTypedData() const { return static_cast<const T*>(data); }
|
||||
|
||||
/**
|
||||
* Overload the GetLayout of PArray to return Layout instead of PLayout to avoid to have to cast in the backend
|
||||
* This is compliant with PArray's definition since Layout is a Covariant type of PLayout.
|
||||
*/
|
||||
Layout &GetLayout() const
|
||||
{ return *static_cast<Layout *>(layout.Get()); }
|
||||
};
|
||||
|
||||
//
|
||||
// Inline methods
|
||||
//
|
||||
|
||||
inline int Array::ResizeData(const Layout *lt, std::size_t item_size)
|
||||
{
|
||||
const std::size_t new_bytes = lt->Size() * item_size;
|
||||
if (size < new_bytes)
|
||||
{
|
||||
data = lt->Alloc(new_bytes);
|
||||
size = new_bytes;
|
||||
}
|
||||
return 0;
|
||||
}
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#endif // MFEM_BACKENDS_PA_ARRAY_HPP
|
||||
@@ -0,0 +1,46 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
bool Backend::Supports(const std::string &engine_spec) const
|
||||
{
|
||||
return true;
|
||||
}
|
||||
|
||||
mfem::Engine *Create(const std::string &engine_spec)
|
||||
{
|
||||
return new Engine(engine_spec);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
mfem::Engine *Create(MPI_Comm comm, const std::string &engine_spec)
|
||||
{
|
||||
return new Engine(comm, engine_spec);
|
||||
}
|
||||
#endif
|
||||
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
@@ -0,0 +1,48 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_PA_BACKEND_HPP
|
||||
#define MFEM_BACKENDS_PA_BACKEND_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
// Only the Backend and Engine classes should be exposed through "backend.hpp"
|
||||
#include "../base/backend.hpp"
|
||||
#include "engine.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
class Backend : public mfem::Backend
|
||||
{
|
||||
public:
|
||||
virtual ~Backend();
|
||||
|
||||
virtual bool Supports(const std::string &engine_spec) const;
|
||||
|
||||
virtual mfem::Engine *Create(const std::string &engine_spec);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
virtual mfem::Engine *Create(MPI_Comm comm, const std::string &engine_spec);
|
||||
#endif
|
||||
};
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#endif // MFEM_BACKENDS_PA_BACKEND_HPP
|
||||
@@ -0,0 +1,337 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
BilinearForm::~BilinearForm()
|
||||
{
|
||||
// Make sure all integrators free their data
|
||||
for (int i = 0; i < tbfi.Size(); i++) delete tbfi[i];
|
||||
}
|
||||
|
||||
void BilinearForm::TransferIntegrators(mfem::Array<mfem::BilinearFormIntegrator*>& bfi) {
|
||||
for (int i = 0; i < bfi.Size(); i++)
|
||||
{
|
||||
mfem::FiniteElementSpace* fes = bform->FESpace();
|
||||
const int order = fes->GetFE(0)->GetOrder();
|
||||
const int ir_order = 2 * order + 1;
|
||||
std::string integ_name(bfi[i]->Name());
|
||||
// A better approach to this would be to use a map containing function pointers to create the desired Integrator
|
||||
// using the integ_name as a key.
|
||||
if (integ_name == "(undefined)")
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator does not define Name()");
|
||||
}
|
||||
else if (integ_name == "mass")
|
||||
{
|
||||
std::cout << "=> " << integ_name << " Integrator transfered" << std::endl;
|
||||
MassIntegrator* integ = dynamic_cast<MassIntegrator*>(bfi[i]);
|
||||
Coefficient* coef;
|
||||
integ->GetParameters(coef);
|
||||
if (coef) {
|
||||
std::cout << "==> with Coefficient" << std::endl;
|
||||
typename MassEquation::ArgsCoeff args(*coef);
|
||||
AddIntegrator( new PADomainInt<MassEquation, Vector<double>>(fes, ir_order, args) );
|
||||
} else {
|
||||
std::cout << "==> without Coefficient" << std::endl;
|
||||
typename MassEquation::ArgsEmpty args;
|
||||
AddIntegrator( new PADomainInt<MassEquation, Vector<double>>(fes, ir_order, args) );
|
||||
}
|
||||
}
|
||||
else if (integ_name == "diffusion")
|
||||
{
|
||||
std::cout << "=> " << integ_name << " Integrator transfered" << std::endl;
|
||||
DiffusionIntegrator* integ = dynamic_cast<DiffusionIntegrator*>(bfi[i]);
|
||||
Coefficient* coef;
|
||||
integ->GetParameters(coef);
|
||||
typename DiffusionEquation::Args args(*coef);
|
||||
AddIntegrator( new PADomainInt<DiffusionEquation, Vector<double>, TensorDomainMult>(fes, ir_order, args) );
|
||||
}
|
||||
else if (integ_name == "convection")
|
||||
{
|
||||
std::cout << "=> " << integ_name << " Integrator transfered" << std::endl;
|
||||
ConvectionIntegrator* integ = dynamic_cast<ConvectionIntegrator*>(bfi[i]);
|
||||
VectorCoefficient* u;
|
||||
double* alpha;
|
||||
integ->GetParameters(u, alpha);
|
||||
typename DGConvectionEquation::Args args(*u, *alpha);
|
||||
AddIntegrator( new PADomainInt<DGConvectionEquation, Vector<double>>(fes, ir_order, args) );
|
||||
}
|
||||
else if (integ_name == "transpose")
|
||||
{
|
||||
std::cout << "=> " << integ_name << " Integrator transfered" << std::endl;
|
||||
TransposeIntegrator* transInteg = dynamic_cast<TransposeIntegrator*>(bfi[i]);
|
||||
BilinearFormIntegrator* bf;
|
||||
transInteg->GetParameters(bf);
|
||||
integ_name = bf->Name();
|
||||
if (integ_name == "dgtrace")
|
||||
{
|
||||
std::cout << "==> " << integ_name << " Integrator transfered" << std::endl;
|
||||
DGTraceIntegrator* integ = dynamic_cast<DGTraceIntegrator*>(bf);
|
||||
Coefficient* rho;
|
||||
VectorCoefficient* u;
|
||||
double* alpha;
|
||||
double* beta;
|
||||
integ->GetParameters(rho, u, alpha, beta);
|
||||
typename DGConvectionEquation::Args args(*u, -(*alpha), *beta);
|
||||
AddIntegrator( new PAFaceInt<DGConvectionEquation, Vector<double>>(fes, ir_order, args) );
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Transpose BilinearFormIntegrator [Name() = " << integ_name
|
||||
<< "] is not supported");
|
||||
}
|
||||
}
|
||||
else if (integ_name == "fct")
|
||||
{
|
||||
std::cout << "=> " << integ_name << " Integrator transfered" << std::endl;
|
||||
FCTIntegrator* integ = dynamic_cast<FCTIntegrator*>(bfi[i]);
|
||||
VectorCoefficient* q;
|
||||
mfem::Vector* d_e;
|
||||
double* a;
|
||||
double* b;
|
||||
integ->GetParameters(q,d_e,a,b);
|
||||
typename FCTEquation::Args args = {*q,*d_e,*a,*b};
|
||||
AddIntegrator( new PAFaceInt<FCTEquation, Vector<double>>(fes, ir_order, args) );
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("BilinearFormIntegrator [Name() = " << integ_name
|
||||
<< "] is not supported");
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::InitRHS(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::Vector &mfem_x, mfem::Vector &mfem_b,
|
||||
mfem::OperatorHandle& A,
|
||||
mfem::Vector &mfem_X, mfem::Vector &mfem_B,
|
||||
int copy_interior) const
|
||||
{
|
||||
const mfem::Operator *P = GetProlongation();
|
||||
const mfem::Operator *R = GetRestriction();
|
||||
|
||||
if (P)
|
||||
{
|
||||
// Variational restriction with P
|
||||
mfem_B.Resize(P->InLayout());
|
||||
P->MultTranspose(mfem_b, mfem_B);
|
||||
mfem_X.Resize(R->OutLayout());
|
||||
R->Mult(mfem_x, mfem_X);
|
||||
}
|
||||
else
|
||||
{
|
||||
// rap, X and B point to the same data as this, x and b
|
||||
mfem_X.MakeRef(mfem_x);
|
||||
mfem_B.MakeRef(mfem_b);
|
||||
}
|
||||
|
||||
if (A.Type() != mfem::Operator::ANY_TYPE)
|
||||
{
|
||||
OperatorHandle mat_e;
|
||||
A.EliminateBC(mat_e, ess_tdof_list, mfem_X, mfem_B);
|
||||
}
|
||||
|
||||
if (!copy_interior && ess_tdof_list.Size() > 0)
|
||||
{
|
||||
Vector<double> &X = mfem_X.Get_PVector()->As<Vector<double>>();
|
||||
const Array &constraint_list = ess_tdof_list.Get_PArray()->As<Array>();
|
||||
|
||||
double *X_data = X.GetData();
|
||||
const int* constraint_data = constraint_list.GetTypedData<int>();
|
||||
|
||||
Vector<double> subvec(constraint_list.GetLayout());
|
||||
double *subvec_data = subvec.GetData();
|
||||
|
||||
const std::size_t num_constraint = constraint_list.Size();
|
||||
|
||||
for (std::size_t i = 0; i < num_constraint; i++) subvec_data[i] = X_data[constraint_data[i]];
|
||||
|
||||
X.Fill(0.0);
|
||||
|
||||
for (std::size_t i = 0; i < num_constraint; i++) X_data[constraint_data[i]] = subvec_data[i];
|
||||
}
|
||||
|
||||
if (A.Type() == mfem::Operator::ANY_TYPE)
|
||||
{
|
||||
ConstrainedOperator *A_constrained = static_cast<ConstrainedOperator*>(A.Ptr());
|
||||
A_constrained->EliminateRHS(mfem_X, mfem_B);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
bool BilinearForm::Assemble()
|
||||
{
|
||||
if (!has_assembled)
|
||||
{
|
||||
TransferIntegrators(*bform->GetDBFI());
|
||||
TransferIntegrators(*bform->GetFBFI());
|
||||
has_assembled = true;
|
||||
}
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
void BilinearForm::FormSystemMatrix(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::OperatorHandle &A)
|
||||
{
|
||||
if (A.Type() == mfem::Operator::ANY_TYPE)
|
||||
{
|
||||
// FIXME: Support different test and trial spaces (MixedBilinearForm)
|
||||
const mfem::Operator *P = GetProlongation();
|
||||
|
||||
mfem::Operator *rap = this;
|
||||
if (P != NULL) rap = new mfem::RAPOperator(*P, *this, *P);
|
||||
|
||||
A.Reset(new ConstrainedOperator(rap, ess_tdof_list, (rap != this)));
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Operator::Type is not supported, type = " << A.Type());
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::FormLinearSystem(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::OperatorHandle &A, mfem::Vector &X, mfem::Vector &B,
|
||||
int copy_interior)
|
||||
{
|
||||
FormSystemMatrix(ess_tdof_list, A);
|
||||
InitRHS(ess_tdof_list, x, b, A, X, B, copy_interior);
|
||||
}
|
||||
|
||||
void BilinearForm::RecoverFEMSolution(const mfem::Vector &X, const mfem::Vector &b,
|
||||
mfem::Vector &x)
|
||||
{
|
||||
const mfem::Operator *P = GetProlongation();
|
||||
if (P)
|
||||
{
|
||||
// Apply conforming prolongation
|
||||
x.Resize(P->OutLayout());
|
||||
P->Mult(X, x);
|
||||
}
|
||||
// Otherwise X and x point to the same data
|
||||
}
|
||||
|
||||
void BilinearForm::Mult(const mfem::Vector &x, mfem::Vector &y) const
|
||||
{
|
||||
trial_fes->ToEVector(x.Get_PVector()->As<Vector<double>>(), x_local);
|
||||
|
||||
y_local.Fill<double>(0.0);
|
||||
for (int i = 0; i < tbfi.Size(); i++) tbfi[i]->MultAdd(x_local, y_local);
|
||||
|
||||
test_fes->ToLVector(y_local, y.Get_PVector()->As<Vector<double>>());
|
||||
}
|
||||
|
||||
void BilinearForm::MultTranspose(const mfem::Vector &x, mfem::Vector &y) const
|
||||
{ mfem_error("mfem::pa::BilinearForm::MultTranspose() is not supported!"); }
|
||||
|
||||
|
||||
ConstrainedOperator::ConstrainedOperator(mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraint_list_,
|
||||
bool own_A_)
|
||||
: Operator(A_->InLayout()->As<Layout>()),
|
||||
A(A_),
|
||||
own_A(own_A_),
|
||||
constraint_list(*InLayout()->GetEngine().MakeLayout(constraint_list_.Size()).As<Layout>(), sizeof(int)),
|
||||
z(OutLayout()->As<Layout>()),
|
||||
w(OutLayout()->As<Layout>()),
|
||||
mfem_z((z.DontDelete(), z)),
|
||||
mfem_w((w.DontDelete(), w))
|
||||
{
|
||||
constraint_list.PushData(constraint_list_.GetData());
|
||||
}
|
||||
|
||||
void ConstrainedOperator::EliminateRHS(const mfem::Vector &mfem_x, mfem::Vector &mfem_b) const
|
||||
{
|
||||
w.Fill<double>(0.0);
|
||||
|
||||
const Vector<double> &x = mfem_x.Get_PVector()->As<Vector<double>>();
|
||||
Vector<double> &b = mfem_b.Get_PVector()->As<Vector<double>>();
|
||||
|
||||
const double *x_data = x.GetData();
|
||||
double *b_data = b.GetData();
|
||||
double *w_data = w.GetData();
|
||||
const int* constraint_data = constraint_list.GetTypedData<int>();
|
||||
|
||||
const std::size_t num_constraint = constraint_list.Size();
|
||||
|
||||
if (num_constraint > 0)
|
||||
{
|
||||
for (std::size_t i = 0; i < num_constraint; i++)
|
||||
w_data[constraint_data[i]] = x_data[constraint_data[i]];
|
||||
}
|
||||
|
||||
A->Mult(mfem_w, mfem_z);
|
||||
|
||||
b.Axpby<double>(1.0, b, -1.0, z);
|
||||
|
||||
if (num_constraint > 0)
|
||||
{
|
||||
for (std::size_t i = 0; i < num_constraint; i++)
|
||||
b_data[constraint_data[i]] = x_data[constraint_data[i]];
|
||||
}
|
||||
}
|
||||
|
||||
void ConstrainedOperator::Mult(const mfem::Vector &mfem_x, mfem::Vector &mfem_y) const
|
||||
{
|
||||
if (constraint_list.Size() == 0)
|
||||
{
|
||||
A->Mult(mfem_x, mfem_y);
|
||||
return;
|
||||
}
|
||||
|
||||
const Vector<double> &x = mfem_x.Get_PVector()->As<Vector<double>>();
|
||||
Vector<double> &y = mfem_y.Get_PVector()->As<Vector<double>>();
|
||||
|
||||
const double *x_data = x.GetData();
|
||||
double *y_data = y.GetData();
|
||||
double *z_data = z.GetData();
|
||||
const int* constraint_data = constraint_list.GetTypedData<int>();
|
||||
|
||||
const std::size_t num_constraint = constraint_list.Size();
|
||||
|
||||
z.Assign<double>(x); // z = x
|
||||
|
||||
// z[constraint_list] = 0.0
|
||||
for (std::size_t i = 0; i < num_constraint; i++)
|
||||
z_data[constraint_data[i]] = 0.0;
|
||||
|
||||
// y = A * z
|
||||
A->Mult(mfem_z, mfem_y);
|
||||
|
||||
// y[constraint_list] = x[constraint_list]
|
||||
for (std::size_t i = 0; i < num_constraint; i++)
|
||||
y_data[constraint_data[i]] = x_data[constraint_data[i]];
|
||||
}
|
||||
|
||||
// Destructor: destroys the unconstrained Operator @a A if @a own_A is true.
|
||||
ConstrainedOperator::~ConstrainedOperator()
|
||||
{
|
||||
if (own_A) delete A;
|
||||
}
|
||||
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
@@ -0,0 +1,155 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_PA_BILINEARFORM_HPP
|
||||
#define MFEM_BACKENDS_PA_BILINEARFORM_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#include "fespace.hpp"
|
||||
#include "array.hpp"
|
||||
#include "vector.hpp"
|
||||
#include "../../fem/bilininteg.hpp"
|
||||
#include "partialassemblykernel.hpp"
|
||||
#include "integrator.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
/**
|
||||
* A backend BilinearForm for cpu that mostly duplicate the mfem::BilinearForm code...
|
||||
*/
|
||||
class BilinearForm : public mfem::PBilinearForm, public mfem::Operator
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// mfem::BilinearForm *bform;
|
||||
|
||||
mfem::Array<TensorBilinearFormIntegrator*> tbfi;
|
||||
bool has_assembled;
|
||||
|
||||
mutable FiniteElementSpace *trial_fes, *test_fes;
|
||||
|
||||
mutable Vector<double> x_local, y_local;
|
||||
|
||||
/**
|
||||
* This function transfers the mfem::BilinearFormIntegrator to backend integrators.
|
||||
*/
|
||||
void TransferIntegrators(mfem::Array<mfem::BilinearFormIntegrator*>& bfi);
|
||||
|
||||
void InitRHS(const mfem::Array<int> &constraint_list,
|
||||
mfem::Vector &mfem_x, mfem::Vector &mfem_b,
|
||||
mfem::OperatorHandle& A,
|
||||
mfem::Vector &mfem_X, mfem::Vector &mfem_B,
|
||||
int copy_interior = 0) const;
|
||||
|
||||
void AddIntegrator(TensorBilinearFormIntegrator* integrator){ tbfi.Append(integrator); }
|
||||
|
||||
public:
|
||||
BilinearForm(const Engine &e, mfem::BilinearForm &bf)
|
||||
: mfem::PBilinearForm(e, bf),
|
||||
// FIXME: for mixed bilinear forms
|
||||
mfem::Operator(*bf.FESpace()->GetVLayout().As<Layout>()),
|
||||
tbfi(),
|
||||
has_assembled(false),
|
||||
trial_fes(&bf.FESpace()->Get_PFESpace()->As<FiniteElementSpace>()),
|
||||
test_fes(&bf.FESpace()->Get_PFESpace()->As<FiniteElementSpace>()),
|
||||
x_local(trial_fes->GetELayout()),
|
||||
y_local(test_fes->GetELayout()) { }
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~BilinearForm();
|
||||
|
||||
/// Return the engine as a backend engine
|
||||
const Engine &GetEngine() { return static_cast<const Engine&>(*engine); }
|
||||
|
||||
/** @brief Prolongation operator from linear algebra (linear system) vectors,
|
||||
to input vectors for the operator. `NULL` means identity. */
|
||||
virtual const Operator *GetProlongation() const { return bform->GetProlongation(); }
|
||||
|
||||
/** @brief Restriction operator from input vectors for the operator to linear
|
||||
algebra (linear system) vectors. `NULL` means identity. */
|
||||
virtual const Operator *GetRestriction() const { return bform->GetRestriction(); }
|
||||
|
||||
/// Assemble the PBilinearForm.
|
||||
/** This method is called from the method BilinearForm::Assemble() of the
|
||||
associated BilinearForm #bform.
|
||||
@returns True, if the host assembly should be skipped. */
|
||||
virtual bool Assemble();
|
||||
|
||||
virtual void FormSystemMatrix(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::OperatorHandle &A);
|
||||
|
||||
virtual void FormLinearSystem(const mfem::Array<int> &ess_tdof_list,
|
||||
mfem::Vector &x, mfem::Vector &b,
|
||||
mfem::OperatorHandle &A, mfem::Vector &mfem_X, mfem::Vector &mfem_B,
|
||||
int copy_interior);
|
||||
|
||||
virtual void RecoverFEMSolution(const mfem::Vector &mfem_X, const mfem::Vector &mfem_b,
|
||||
mfem::Vector &mfem_x);
|
||||
|
||||
/// Operator application: `y=A(x)`.
|
||||
virtual void Mult(const mfem::Vector &mfem_x, mfem::Vector &mfem_y) const;
|
||||
|
||||
/** @brief Action of the transpose operator: `y=A^t(x)`. The default behavior
|
||||
in class Operator is to generate an error. */
|
||||
virtual void MultTranspose(const mfem::Vector &mfem_x, mfem::Vector &mfem_y) const;
|
||||
};
|
||||
|
||||
/**
|
||||
* Duplicates the mfem::ConstrainedOperator in the backend
|
||||
*/
|
||||
class ConstrainedOperator : public mfem::Operator
|
||||
{
|
||||
const mfem::Operator *A;
|
||||
const bool own_A;
|
||||
Array constraint_list;
|
||||
mutable Vector<double> z, w;
|
||||
mutable mfem::Vector mfem_z, mfem_w;
|
||||
|
||||
public:
|
||||
ConstrainedOperator(mfem::Operator *A_,
|
||||
const mfem::Array<int> &constraint_list_,
|
||||
bool own_A_ = false);
|
||||
|
||||
// Destructor: destroys the unconstrained Operator @a A if @a own_A is true.
|
||||
virtual ~ConstrainedOperator();
|
||||
|
||||
/** @brief Eliminate "essential boundary condition" values specified in @a x
|
||||
from the given right-hand side @a b.
|
||||
Performs the following steps:
|
||||
z = A((0,x_b)); b_i -= z_i; b_b = x_b;
|
||||
where the "_b" subscripts denote the essential (boundary) indices/dofs of
|
||||
the vectors, and "_i" -- the rest of the entries. */
|
||||
void EliminateRHS(const mfem::Vector &mfem_x, mfem::Vector &mfem_b) const;
|
||||
|
||||
/** @brief Constrained operator action.
|
||||
Performs the following steps:
|
||||
z = A((x_i,0)); y_i = z_i; y_b = x_b;
|
||||
where the "_b" subscripts denote the essential (boundary) indices/dofs of
|
||||
the vectors, and "_i" -- the rest of the entries. */
|
||||
virtual void Mult(const mfem::Vector &mfem_x, mfem::Vector &mfem_y) const;
|
||||
};
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#endif // MFEM_BACKENDS_PA_BILINEAR_FORM_HPP
|
||||
@@ -0,0 +1,692 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
//This file contains useful functions to compute fluxes for DG methods.
|
||||
|
||||
#include <vector>
|
||||
// #include "fem.hpp"
|
||||
#include "tensor.hpp"
|
||||
#include "../../linalg/vector.hpp"
|
||||
#include "../../mesh/mesh.hpp"
|
||||
|
||||
using std::vector;
|
||||
using std::pair;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
/**
|
||||
* Returns the canonical coordinate vectors e_1 and e_2.
|
||||
*/
|
||||
void getBaseVector2D(mfem::Vector& e1, mfem::Vector& e2)
|
||||
{
|
||||
e1.SetSize(2);
|
||||
e1(0) = 1;
|
||||
e1(1) = 0;
|
||||
e2.SetSize(2);
|
||||
e2(0) = 0;
|
||||
e2(1) = 1;
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the canonical coordinate vectors e_1, e_2 and e_3.
|
||||
*/
|
||||
void getBaseVector3D(mfem::Vector& e1, mfem::Vector& e2, mfem::Vector& e3)
|
||||
{
|
||||
e1.SetSize(3);
|
||||
e1(0) = 1;
|
||||
e1(1) = 0;
|
||||
e1(2) = 0;
|
||||
e2.SetSize(3);
|
||||
e2(0) = 0;
|
||||
e2(1) = 1;
|
||||
e2(2) = 0;
|
||||
e3.SetSize(3);
|
||||
e3(0) = 0;
|
||||
e3(1) = 0;
|
||||
e3(2) = 1;
|
||||
}
|
||||
|
||||
/**
|
||||
* A function that initialize the local coordinate base for a face with
|
||||
* indice face_ind.
|
||||
* This returns the local face coordinate base expressed in reference
|
||||
* element coordinate.
|
||||
*/
|
||||
// Highly dependent of the node ordering from geom.cpp
|
||||
void InitFaceCoord2D(const int face_id, IntMatrix& base)
|
||||
{
|
||||
//Vector e1,e2;
|
||||
//getBaseVector2D(e1,e2);
|
||||
base.zero();
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://SOUTH
|
||||
base(0,0)= 1;//base.SetCol(0, e1);
|
||||
base(1,1)=-1;//base.SetCol(1,-e2);
|
||||
break;
|
||||
case 1://EAST
|
||||
base(1,0)= 1;//base.SetCol(0, e2);
|
||||
base(0,1)= 1;//base.SetCol(1, e1);
|
||||
break;
|
||||
case 2://NORTH
|
||||
base(0,0)=-1;//base.SetCol(0,-e1);
|
||||
base(1,1)= 1;//base.SetCol(1, e2);
|
||||
break;
|
||||
case 3://WEST
|
||||
base(1,0)=-1;//base.SetCol(0,-e2);
|
||||
base(0,1)= 1;//base.SetCol(1, e1);
|
||||
break;
|
||||
default:
|
||||
mfem_error("The face_ind exceeds the number of faces in this dimension.");
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
// Highly dependent of the node ordering from geom.cpp
|
||||
void InitFaceCoord3D(const int face_id, IntMatrix& base)
|
||||
{
|
||||
//Vector e1,e2,e3;
|
||||
//getBaseVector3D(e1,e2,e3);
|
||||
base.zero();
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://BOTTOM
|
||||
base(0,0)= 1;//base.SetCol(0, e1);
|
||||
base(1,1)=-1;//base.SetCol(1,-e2);
|
||||
base(2,2)=-1;//base.SetCol(2,-e3);
|
||||
break;
|
||||
case 1://SOUTH
|
||||
base(0,0)= 1;//base.SetCol(0, e1);
|
||||
base(2,1)= 1;//base.SetCol(1, e3);
|
||||
base(1,2)=-1;//base.SetCol(2,-e2);
|
||||
break;
|
||||
case 2://EAST
|
||||
base(1,0)= 1;//base.SetCol(0, e2);
|
||||
base(2,1)= 1;//base.SetCol(1, e3);
|
||||
base(0,2)= 1;//base.SetCol(2, e1);
|
||||
break;
|
||||
case 3://NORTH
|
||||
base(0,0)=-1;//base.SetCol(0,-e1);
|
||||
base(2,1)= 1;//base.SetCol(1, e3);
|
||||
base(1,2)= 1;//base.SetCol(2, e2);
|
||||
break;
|
||||
case 4://WEST
|
||||
base(1,0)=-1;//base.SetCol(0,-e2);
|
||||
base(2,1)= 1;//base.SetCol(1, e3);
|
||||
base(0,2)=-1;//base.SetCol(2,-e1);
|
||||
break;
|
||||
case 5://TOP
|
||||
base(0,0)= 1;//base.SetCol(0, e1);
|
||||
base(1,1)= 1;//base.SetCol(1, e2);
|
||||
base(2,2)= 1;//base.SetCol(2, e3);
|
||||
break;
|
||||
default:
|
||||
mfem_error("The face_ind exceeds the number of faces in this dimension.");
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
/** Maps the coordinate vectors of the first face to the coordinate vectors of the second face.
|
||||
* nb_rot is the number of rotation to opperate so that the first node of each face match.
|
||||
* The result map contains pairs of int, where the first int is the cofficient, and the
|
||||
* second int is the indice of the second face vector.
|
||||
*/
|
||||
// There shouldn't be any rotation in 2D.
|
||||
void GetLocalCoordMap2D(vector<pair<int,int> >& map, const int nb_rot)
|
||||
{
|
||||
map.resize(2);
|
||||
//First and second coordinate vectors should always be of opposite direction in 2D.
|
||||
//TODO Maybe not
|
||||
map[0] = pair<int,int>(-1,0);
|
||||
map[1] = pair<int,int>(-1,1);
|
||||
}
|
||||
|
||||
void GetLocalCoordMap3D(vector< pair<int,int> >& map, const int orientation)
|
||||
{
|
||||
map.resize(3);
|
||||
// orientation determines how local coordinates are oriented from one face to the other.
|
||||
// See case 2 for an example.
|
||||
switch(orientation)
|
||||
{
|
||||
case 0://{0, 1, 2, 3}
|
||||
map[0] = pair<int,int>( 1,0);
|
||||
map[1] = pair<int,int>( 1,1);
|
||||
map[2] = pair<int,int>( 1,2);
|
||||
break;
|
||||
case 1://{0, 3, 2, 1}
|
||||
map[0] = pair<int,int>( 1,1);
|
||||
map[1] = pair<int,int>( 1,0);
|
||||
map[2] = pair<int,int>(-1,2);
|
||||
break;
|
||||
case 2://{1, 2, 3, 0}
|
||||
//first vector equals -1 times the second vector of the other face coordinates
|
||||
map[0] = pair<int,int>(-1,1);
|
||||
//second vector equals -1 times the first vector of the other face coordinates
|
||||
map[1] = pair<int,int>( 1,0);
|
||||
//third vector equals -1 times the third vector of the other face coordinates
|
||||
map[2] = pair<int,int>( 1,2);
|
||||
break;
|
||||
case 3://{1, 0, 3, 2}
|
||||
map[0] = pair<int,int>(-1,0);
|
||||
map[1] = pair<int,int>( 1,1);
|
||||
map[2] = pair<int,int>(-1,2);
|
||||
break;
|
||||
case 4://{2, 3, 0, 1}
|
||||
map[0] = pair<int,int>(-1,0);
|
||||
map[1] = pair<int,int>(-1,1);
|
||||
map[2] = pair<int,int>( 1,2);
|
||||
break;
|
||||
case 5://{2, 1, 0, 3}
|
||||
map[0] = pair<int,int>(-1,1);
|
||||
map[1] = pair<int,int>(-1,0);
|
||||
map[2] = pair<int,int>(-1,2);
|
||||
break;
|
||||
case 6://{3, 0, 1, 2}
|
||||
map[0] = pair<int,int>( 1,1);
|
||||
map[1] = pair<int,int>(-1,0);
|
||||
map[2] = pair<int,int>( 1,2);
|
||||
break;
|
||||
case 7://{3, 2, 1, 0}
|
||||
map[0] = pair<int,int>( 1,0);
|
||||
map[1] = pair<int,int>(-1,1);
|
||||
map[2] = pair<int,int>(-1,2);
|
||||
break;
|
||||
default:
|
||||
mfem_error("There shouldn't be that many orientations.");
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the change of matrix P from base_K2 to base_K1 according to the mapping map.
|
||||
*/
|
||||
void GetChangeOfBasis(const IntMatrix& base_K1, IntMatrix& base_K2,
|
||||
const vector<pair<int,int> >& map, IntMatrix& P)
|
||||
{
|
||||
int dim = base_K1.Height();
|
||||
int i,j,ind;
|
||||
double coeff;
|
||||
for (int n = 0; n < dim; ++n)
|
||||
{
|
||||
i = 0;
|
||||
while( base_K1(i,n) == 0 ) ++i;
|
||||
j = 0;
|
||||
ind = map[n].second;
|
||||
while( base_K2(j,ind) == 0 ) ++j;
|
||||
coeff = map[n].first;
|
||||
P(i,j) = coeff * base_K1(i,n) * base_K2(j,ind);
|
||||
}
|
||||
}
|
||||
|
||||
void GetChangeOfBasis2D(const int face_id1, const int face_id2, IntMatrix& P)
|
||||
{
|
||||
// We add 8 because of C++ stupid definition of modulo
|
||||
int nb_rot = (8 + face_id2 - face_id1 - 2)%4;
|
||||
P.zero();
|
||||
switch(nb_rot)
|
||||
{
|
||||
case 0://Id=R^4
|
||||
P(0,0) = 1;
|
||||
P(1,1) = 1;
|
||||
break;
|
||||
case 1://R
|
||||
P(1,0) = 1;
|
||||
P(0,1) =-1;
|
||||
break;
|
||||
case 2://R²
|
||||
P(0,0) =-1;
|
||||
P(1,1) =-1;
|
||||
break;
|
||||
case 3://R³
|
||||
P(1,0) =-1;
|
||||
P(0,1) = 1;
|
||||
break;
|
||||
default:mfem_error("C++ modulo error in GetChangeOfBasis2D");
|
||||
}
|
||||
}
|
||||
|
||||
void GetChangeOfBasis(const int permutation, IntMatrix& P)
|
||||
{
|
||||
int code1 = permutation/100;
|
||||
int ind1 = code1/2;
|
||||
int val1 = code1%2==0?-1:1;
|
||||
int code2 = (permutation%100)/10;
|
||||
int ind2 = code2/2;
|
||||
int val2 = code2%2==0?-1:1;
|
||||
int code3 = permutation%10;
|
||||
int ind3 = code3/2;
|
||||
int val3 = code3%2==0?-1:1;
|
||||
P.zero();
|
||||
P(ind1,0) = val1;
|
||||
P(ind2,1) = val2;
|
||||
P(ind3,2) = val3;
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the face_id that identifies the face on the reference element, and nb_rot the
|
||||
* "rotations" the face did between reference to physical spaces.
|
||||
*/
|
||||
void GetIdRotInfo(const int face_info, int& face_id, int& nb_rot){
|
||||
int orientation = face_info % 64;
|
||||
face_id = face_info / 64;
|
||||
nb_rot = orientation;
|
||||
}
|
||||
|
||||
void GetFaceInfo(const Mesh* mesh, const int face, int& ind_elt1, int& ind_elt2, int& face_id1, int& face_id2, int& nb_rot1, int& nb_rot2)
|
||||
{
|
||||
// We collect the indices of the two elements on the face, element1 is the master element,
|
||||
// the one that defines the normal to the face.
|
||||
mesh->GetFaceElements(face,&ind_elt1,&ind_elt2);
|
||||
int info_elt1, info_elt2;
|
||||
// We collect the informations on the face for the two elements.
|
||||
mesh->GetFaceInfos(face,&info_elt1,&info_elt2);
|
||||
GetIdRotInfo(info_elt1,face_id1,nb_rot1);//nb_rot1 is always 0 by convention
|
||||
GetIdRotInfo(info_elt2,face_id2,nb_rot2);
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the permutation id, so that we can permute dofs to be in a structured case.
|
||||
*/
|
||||
int Permutation2D(const int face_id_trial, const int face_id_test)
|
||||
{
|
||||
int perm = face_id_trial - face_id_test - 2;
|
||||
perm = perm < 0 ? perm+4 : perm;
|
||||
return perm;
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns an integer that encrypts P.
|
||||
*/
|
||||
void Permutation3D(const int face_id1, const int face_id2, const int orientation, int& perm1, int& perm2)
|
||||
{
|
||||
IntMatrix K1(3,3);
|
||||
K1.zero();
|
||||
InitFaceCoord3D(face_id1, K1);
|
||||
IntMatrix K2(3,3);
|
||||
K2.zero();
|
||||
InitFaceCoord3D(face_id2, K2);
|
||||
vector< pair<int,int> > map;
|
||||
GetLocalCoordMap3D(map, orientation);
|
||||
IntMatrix P(3,3);
|
||||
P.zero();
|
||||
GetChangeOfBasis(K1, K2, map, P);
|
||||
perm1 = 0;
|
||||
// Encrypts first column
|
||||
perm1 += 100*(0*(P(0,0)==-1) + 1*(P(0,0)==1) + 2*(P(1,0)==-1) + 3*(P(1,0)==1) + 4*(P(2,0)==-1) + 5*(P(2,0)==1));
|
||||
// Encrypts second column
|
||||
perm1 += 10 *(0*(P(0,1)==-1) + 1*(P(0,1)==1) + 2*(P(1,1)==-1) + 3*(P(1,1)==1) + 4*(P(2,1)==-1) + 5*(P(2,1)==1));
|
||||
// Encrypts third column
|
||||
perm1 += (0*(P(0,2)==-1) + 1*(P(0,2)==1) + 2*(P(1,2)==-1) + 3*(P(1,2)==1) + 4*(P(2,2)==-1) + 5*(P(2,2)==1));
|
||||
// Encrypts the transposed permutation matrix in a second integer.
|
||||
perm2 = 0;
|
||||
perm2 += 100*(0*(P(0,0)==-1) + 1*(P(0,0)==1) + 2*(P(0,1)==-1) + 3*(P(0,1)==1) + 4*(P(0,2)==-1) + 5*(P(0,2)==1));
|
||||
perm2 += 10 *(0*(P(1,0)==-1) + 1*(P(1,0)==1) + 2*(P(1,1)==-1) + 3*(P(1,1)==1) + 4*(P(1,2)==-1) + 5*(P(1,2)==1));
|
||||
perm2 += (0*(P(2,0)==-1) + 1*(P(2,0)==1) + 2*(P(2,1)==-1) + 3*(P(2,1)==1) + 4*(P(2,2)==-1) + 5*(P(2,2)==1));
|
||||
}
|
||||
|
||||
void GetPermutation(const int dim, const int face_id1, const int face_id2, const int orientation, int& perm1, int& perm2)
|
||||
{
|
||||
switch(dim){
|
||||
case 1:
|
||||
mfem_error("Not yet implemented");
|
||||
break;
|
||||
case 2:
|
||||
perm1 = Permutation2D(face_id1, face_id2);
|
||||
perm2 = Permutation2D(face_id2, face_id1);
|
||||
break;
|
||||
case 3:
|
||||
Permutation3D(face_id1, face_id2, orientation, perm1, perm2);
|
||||
break;
|
||||
default:
|
||||
mfem_error("Dimension of the problem too high.");
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Hardcoded permutation due to arbitrary hardcoded orientation in geom.cpp.
|
||||
* Will break if geom.cpp changes.
|
||||
* This function could be improved by returning the 'permutation' parameters once,
|
||||
* instead of recomputing them for every quadrature point...
|
||||
*/
|
||||
int GetFaceQuadIndex3D(const int face_id, const int orientation, const int qind, const int quads, Tensor<1,int>& ind_f)
|
||||
{
|
||||
int& k1 = ind_f(0);
|
||||
int& k2 = ind_f(1);
|
||||
int kf1,kf2;
|
||||
kf1 = qind%quads;
|
||||
kf2 = qind/quads;
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://BOTTOM
|
||||
switch(orientation)
|
||||
{
|
||||
case 0://{0, 1, 2, 3}
|
||||
k1 = kf1;
|
||||
k2 = quads-1-kf2;
|
||||
break;
|
||||
case 1://{0, 3, 2, 1}
|
||||
k1 = quads-1-kf2;
|
||||
k2 = kf1;
|
||||
break;
|
||||
case 2://{1, 2, 3, 0}
|
||||
k1 = quads-1-kf2;
|
||||
k2 = quads-1-kf1;
|
||||
break;
|
||||
case 3://{1, 0, 3, 2}
|
||||
k1 = quads-1-kf1;
|
||||
k2 = quads-1-kf2;
|
||||
break;
|
||||
case 4://{2, 3, 0, 1}
|
||||
k1 = quads-1-kf1;
|
||||
k2 = kf2;
|
||||
break;
|
||||
case 5://{2, 1, 0, 3}
|
||||
k1 = kf2;
|
||||
k2 = quads-1-kf1;
|
||||
break;
|
||||
case 6://{3, 0, 1, 2}
|
||||
k1 = kf2;
|
||||
k2 = kf1;
|
||||
break;
|
||||
case 7://{3, 2, 1, 0}
|
||||
k1 = kf1;
|
||||
k2 = kf2;
|
||||
break;
|
||||
default:
|
||||
mfem_error("This orientation does not exist in 3D");
|
||||
break;
|
||||
}
|
||||
break;
|
||||
case 1://SOUTH
|
||||
switch(orientation)
|
||||
{
|
||||
case 0://{0, 1, 2, 3}
|
||||
k1 = kf1;
|
||||
k2 = kf2;
|
||||
break;
|
||||
case 1://{0, 3, 2, 1}
|
||||
k1 = kf2;
|
||||
k2 = kf1;
|
||||
break;
|
||||
case 2://{1, 2, 3, 0}
|
||||
k1 = kf2;
|
||||
k2 = quads-1-kf1;
|
||||
break;
|
||||
case 3://{1, 0, 3, 2}
|
||||
k1 = quads-1-kf1;
|
||||
k2 = kf2;
|
||||
break;
|
||||
case 4://{2, 3, 0, 1}
|
||||
k1 = quads-1-kf1;
|
||||
k2 = quads-1-kf2;
|
||||
break;
|
||||
case 5://{2, 1, 0, 3}
|
||||
k1 = quads-1-kf2;
|
||||
k2 = quads-1-kf1;
|
||||
break;
|
||||
case 6://{3, 0, 1, 2}
|
||||
k1 = quads-1-kf2;
|
||||
k2 = kf1;
|
||||
break;
|
||||
case 7://{3, 2, 1, 0}
|
||||
k1 = kf1;
|
||||
k2 = quads-1-kf2;
|
||||
break;
|
||||
default:
|
||||
mfem_error("This orientation does not exist in 3D");
|
||||
break;
|
||||
}
|
||||
break;
|
||||
case 2://EAST
|
||||
switch(orientation)
|
||||
{
|
||||
case 0://{0, 1, 2, 3}
|
||||
k1 = kf1;
|
||||
k2 = kf2;
|
||||
break;
|
||||
case 1://{0, 3, 2, 1}
|
||||
k1 = kf2;
|
||||
k2 = kf1;
|
||||
break;
|
||||
case 2://{1, 2, 3, 0}
|
||||
k1 = kf2;
|
||||
k2 = quads-1-kf1;
|
||||
break;
|
||||
case 3://{1, 0, 3, 2}
|
||||
k1 = quads-1-kf1;
|
||||
k2 = kf2;
|
||||
break;
|
||||
case 4://{2, 3, 0, 1}
|
||||
k1 = quads-1-kf1;
|
||||
k2 = quads-1-kf2;
|
||||
break;
|
||||
case 5://{2, 1, 0, 3}
|
||||
k1 = quads-1-kf2;
|
||||
k2 = quads-1-kf1;
|
||||
break;
|
||||
case 6://{3, 0, 1, 2}
|
||||
k1 = quads-1-kf2;
|
||||
k2 = kf1;
|
||||
break;
|
||||
case 7://{3, 2, 1, 0}
|
||||
k1 = kf1;
|
||||
k2 = quads-1-kf2;
|
||||
break;
|
||||
default:
|
||||
mfem_error("This orientation does not exist in 3D");
|
||||
break;
|
||||
}
|
||||
break;
|
||||
case 3://NORTH
|
||||
switch(orientation)
|
||||
{
|
||||
case 0://{0, 1, 2, 3}
|
||||
k1 = quads-1-kf1;
|
||||
k2 = kf2;
|
||||
break;
|
||||
case 1://{0, 3, 2, 1}
|
||||
k1 = kf2;
|
||||
k2 = quads-1-kf1;
|
||||
break;
|
||||
case 2://{1, 2, 3, 0}
|
||||
k1 = kf2;
|
||||
k2 = kf1;
|
||||
break;
|
||||
case 3://{1, 0, 3, 2}
|
||||
k1 = kf1;
|
||||
k2 = kf2;
|
||||
break;
|
||||
case 4://{2, 3, 0, 1}
|
||||
k1 = kf1;
|
||||
k2 = quads-1-kf2;
|
||||
break;
|
||||
case 5://{2, 1, 0, 3}
|
||||
k1 = quads-1-kf2;
|
||||
k2 = kf1;
|
||||
break;
|
||||
case 6://{3, 0, 1, 2}
|
||||
k1 = quads-1-kf2;
|
||||
k2 = quads-1-kf1;
|
||||
break;
|
||||
case 7://{3, 2, 1, 0}
|
||||
k1 = quads-1-kf1;
|
||||
k2 = quads-1-kf2;
|
||||
break;
|
||||
default:
|
||||
mfem_error("This orientation does not exist in 3D");
|
||||
break;
|
||||
}
|
||||
break;
|
||||
case 4://WEST
|
||||
switch(orientation)
|
||||
{
|
||||
case 0://{0, 1, 2, 3}
|
||||
k1 = quads-1-kf1;
|
||||
k2 = kf2;
|
||||
break;
|
||||
case 1://{0, 3, 2, 1}
|
||||
k1 = kf2;
|
||||
k2 = quads-1-kf1;
|
||||
break;
|
||||
case 2://{1, 2, 3, 0}
|
||||
k1 = kf2;
|
||||
k2 = kf1;
|
||||
break;
|
||||
case 3://{1, 0, 3, 2}
|
||||
k1 = kf1;
|
||||
k2 = kf2;
|
||||
break;
|
||||
case 4://{2, 3, 0, 1}
|
||||
k1 = kf1;
|
||||
k2 = quads-1-kf2;
|
||||
break;
|
||||
case 5://{2, 1, 0, 3}
|
||||
k1 = quads-1-kf2;
|
||||
k2 = kf1;
|
||||
break;
|
||||
case 6://{3, 0, 1, 2}
|
||||
k1 = quads-1-kf2;
|
||||
k2 = quads-1-kf1;
|
||||
break;
|
||||
case 7://{3, 2, 1, 0}
|
||||
k1 = quads-1-kf1;
|
||||
k2 = quads-1-kf2;
|
||||
break;
|
||||
default:
|
||||
mfem_error("This orientation does not exist in 3D");
|
||||
break;
|
||||
}
|
||||
break;
|
||||
case 5://TOP
|
||||
switch(orientation)
|
||||
{
|
||||
case 0://{0, 1, 2, 3}
|
||||
k1 = kf1;
|
||||
k2 = kf2;
|
||||
break;
|
||||
case 1://{0, 3, 2, 1}
|
||||
k1 = kf2;
|
||||
k2 = kf1;
|
||||
break;
|
||||
case 2://{1, 2, 3, 0}
|
||||
k1 = kf2;
|
||||
k2 = quads-1-kf1;
|
||||
break;
|
||||
case 3://{1, 0, 3, 2}
|
||||
k1 = quads-1-kf1;
|
||||
k2 = kf2;
|
||||
break;
|
||||
case 4://{2, 3, 0, 1}
|
||||
k1 = quads-1-kf1;
|
||||
k2 = quads-1-kf2;
|
||||
break;
|
||||
case 5://{2, 1, 0, 3}
|
||||
k1 = quads-1-kf2;
|
||||
k2 = quads-1-kf1;
|
||||
break;
|
||||
case 6://{3, 0, 1, 2}
|
||||
k1 = quads-1-kf2;
|
||||
k2 = kf1;
|
||||
break;
|
||||
case 7://{3, 2, 1, 0}
|
||||
k1 = kf1;
|
||||
k2 = quads-1-kf2;
|
||||
break;
|
||||
default:
|
||||
mfem_error("This orientation does not exist in 3D");
|
||||
break;
|
||||
}
|
||||
break;
|
||||
default:
|
||||
mfem_error("This face_id does not exist in 3D");
|
||||
break;
|
||||
}
|
||||
return k1 + quads*k2;
|
||||
}
|
||||
|
||||
int GetFaceQuadIndex(const int dim, const int face_id, const int orientation, const int qind, const int quads, Tensor<1,int>& ind_f)
|
||||
{
|
||||
int res = 0;
|
||||
switch(dim)
|
||||
{
|
||||
case 1:
|
||||
break;
|
||||
case 2:
|
||||
if(face_id<=1){//SOUTH or EAST (canonical ordering)
|
||||
res = ind_f(0) = qind;
|
||||
}else{//NORTH or WEST (counter-canonical ordering)
|
||||
res = ind_f(0) = quads-1-qind;
|
||||
}
|
||||
break;
|
||||
case 3:
|
||||
res = GetFaceQuadIndex3D(face_id, orientation, qind, quads, ind_f);
|
||||
break;
|
||||
default:
|
||||
mfem_error("Dimension too high.");
|
||||
break;
|
||||
}
|
||||
return res;
|
||||
}
|
||||
|
||||
const int GetGlobalQuadIndex(const int dim, const int face_id, const int quads, Tensor<1,int>& ind_f)
|
||||
{
|
||||
switch(dim)
|
||||
{
|
||||
case 1:
|
||||
if (face_id==0)//WEST
|
||||
{
|
||||
return 0;
|
||||
}else{//EAST
|
||||
return quads-1;
|
||||
}
|
||||
case 2:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://SOUTH
|
||||
return ind_f(0);
|
||||
case 1://EAST
|
||||
return quads-1 + ind_f(0)*quads;
|
||||
case 2://NORTH
|
||||
return ind_f(0) + (quads-1)*quads;
|
||||
case 3://WEST
|
||||
return ind_f(0)*quads;
|
||||
}
|
||||
case 3:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://BOTTOM
|
||||
return ind_f(0) + ind_f(1)*quads;
|
||||
case 1://SOUTH
|
||||
return ind_f(0) + ind_f(1)*quads*quads;
|
||||
case 2://EAST
|
||||
return (quads-1) + ind_f(0)*quads + ind_f(1)*quads*quads;
|
||||
case 3://NORTH
|
||||
return ind_f(0) + (quads-1)*quads + ind_f(1)*quads*quads;
|
||||
case 4://WEST
|
||||
return ind_f(0)*quads + ind_f(1)*quads*quads;
|
||||
case 5://TOP
|
||||
return ind_f(0) + ind_f(1)*quads + (quads-1)*quads*quads;
|
||||
}
|
||||
default:
|
||||
mfem_error("Dimension too high.");
|
||||
break;
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
@@ -0,0 +1,129 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
//This file contains useful functions to compute fluxes for DG methods.
|
||||
|
||||
|
||||
#ifndef MFEM_DGFACEFUNC
|
||||
#define MFEM_DGFACEFUNC
|
||||
#include "tensor.hpp"
|
||||
#include <vector>
|
||||
#include <utility>
|
||||
#include "../../linalg/vector.hpp"
|
||||
#include "../../mesh/mesh.hpp"
|
||||
#include "tensorialfunctions.hpp"
|
||||
|
||||
using std::vector;
|
||||
using std::pair;
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
/**
|
||||
* Returns the canonical coordinate vectors e_1 and e_2.
|
||||
*/
|
||||
void getBaseVector2D(mfem::Vector& e1, mfem::Vector& e2);
|
||||
|
||||
/**
|
||||
* Returns the canonical coordinate vectors e_1, e_2 and e_3.
|
||||
*/
|
||||
void getBaseVector3D(mfem::Vector& e1, mfem::Vector& e2, mfem::Vector& e3);
|
||||
|
||||
/** A function that initialize the local coordinate base for a face with
|
||||
* indice face_ind.
|
||||
* This returns the local face coordinate base expressed in reference
|
||||
* element coordinate.
|
||||
*/
|
||||
// Highly dependent of the node ordering from geom.cpp
|
||||
void InitFaceCoord2D(const int face_id, IntMatrix& base);
|
||||
|
||||
// Highly dependent of the node ordering from geom.cpp
|
||||
void InitFaceCoord3D(const int face_id, IntMatrix& base);
|
||||
|
||||
/** Maps the coordinate vectors of the first face to the coordinate vectors of the second face.
|
||||
* nb_rot is the number of rotation to opperate so that the first node of each face match.
|
||||
* The result map contains pairs of int, where the first int is a direction cofficient,
|
||||
* and the second int is the indice of the second face vector.
|
||||
*/
|
||||
// There shouldn't be any rotation in 2D.
|
||||
void GetLocalCoordMap2D(vector<pair<int,int> >& map, const int nb_rot = 0);
|
||||
|
||||
// Rotations follow the ordering of the nodes.
|
||||
void GetLocalCoordMap3D(vector<pair<int,int> >& map, const int nb_rot);
|
||||
|
||||
/**
|
||||
* Returns the change of matrix P from base_K2 to base_K1 according to the mapping map.
|
||||
*/
|
||||
void GetChangeOfBasis(const IntMatrix& base_K1, IntMatrix& base_K2,
|
||||
const vector<pair<int,int> >& map, IntMatrix& P);
|
||||
|
||||
void GetChangeOfBasis(const int permutation, IntMatrix& P);
|
||||
|
||||
/**
|
||||
* Returns the change of coordinate from second element to first element on a 2D face.
|
||||
*/
|
||||
void GetChangeOfBasis2D(const int face_id1, const int face_id2, IntMatrix& P);
|
||||
|
||||
/**
|
||||
* Returns the indices, face ID, and number of rotations, of the two element sharing a face.
|
||||
* The number of rotations is relative to the element 1, so nb_rot1 is always 0.
|
||||
*/
|
||||
void GetFaceInfo(const Mesh* mesh, const int face,
|
||||
int& ind_elt1, int& ind_elt2,
|
||||
int& face_id1, int& face_id2,
|
||||
int& nb_rot1, int& nb_rot2);
|
||||
|
||||
/**
|
||||
* Returns the face_id that identifies the face on the reference element, and nb_rot the
|
||||
* "rotations" the face did between reference to physical spaces.
|
||||
*/
|
||||
void GetIdRotInfo(const int face_info, int& face_id, int& nb_rot);
|
||||
|
||||
/**
|
||||
* Returns an integer identifying the permutation to apply to be in structured-
|
||||
* like configuration for 2D hex meshes.
|
||||
*/
|
||||
int Permutation2D(const int face_id_trial, const int face_id_test);
|
||||
|
||||
/**
|
||||
* Returns an integer identifying the permutation to apply to be in structured-
|
||||
* like configuration for 3D hex meshes.
|
||||
*/
|
||||
void Permutation3D(const int face_id1, const int face_id2, const int orientation, int& perm1, int& perm2);
|
||||
|
||||
/**
|
||||
* Returns an integer identifying the permutation to apply to be in structured-
|
||||
* like configuration.
|
||||
*/
|
||||
void GetPermutation(const int dim, const int face_id1, const int face_id2, const int orientation, int& perm1, int& perm2);
|
||||
|
||||
int GetFaceQuadIndex3D(const int face_id, const int orientation, const int qind, const int quads, Tensor<1,int>& ind_f);
|
||||
|
||||
/**
|
||||
* Returns the indices of a quadrature point on the face of an hex element relative to the index of the quadrature
|
||||
* point on the reference face.
|
||||
*/
|
||||
int GetFaceQuadIndex(const int dim, const int face_id, const int orientation, const int qind, const int quads, Tensor<1,int>& ind_f);
|
||||
|
||||
/**
|
||||
* Returns the indices of a quadrature point on the element relative to the index of the quadrature
|
||||
* point on the reference face.
|
||||
*/
|
||||
const int GetGlobalQuadIndex(const int dim, const int face_id, const int quads, Tensor<1,int>& ind_f);
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
#endif // MFEM_DGFACEFUNC
|
||||
@@ -0,0 +1,216 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
|
||||
// This file contains a prototype version for Discontinuous Galerkin Partial assembly
|
||||
|
||||
#ifndef MFEM_DGPABILININTEG
|
||||
#define MFEM_DGPABILININTEG
|
||||
|
||||
// #include "bilininteg.hpp"
|
||||
#include "tensor.hpp"
|
||||
|
||||
// #include "fem.hpp"
|
||||
// #include <cmath>
|
||||
// #include <algorithm>
|
||||
// #include "../linalg/vector.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
/**
|
||||
* The different operators available for the Kernels
|
||||
*/
|
||||
enum PAOp { BtDB, BtDG, GtDB, GtDG };
|
||||
|
||||
|
||||
class DiffusionEquation
|
||||
{
|
||||
public:
|
||||
static const PAOp OpName = GtDG;
|
||||
|
||||
struct Args {
|
||||
Args(Coefficient& q) : q(q) {}
|
||||
Coefficient& q;
|
||||
};
|
||||
|
||||
void evalD(Tensor<2>& res, ElementTransformation *Tr, const IntegrationPoint& ip,
|
||||
const Tensor<2>& Jac, const Args& args)
|
||||
{
|
||||
const int dim = res.size(0);
|
||||
Tensor<2> Adj(dim,dim);
|
||||
adjugate(Jac,Adj);
|
||||
double val = 0.0;
|
||||
double qval = 1.0;
|
||||
double detJ = det(Jac);
|
||||
qval = 1.0;//args.q.Eval(*Tr, ip);//FIXME
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
for (int j = 0; j < dim; ++j)
|
||||
{
|
||||
val = 0.0;
|
||||
for (int k = 0; k < dim; ++k)
|
||||
{
|
||||
val += Adj(i,k)*Adj(j,k); //Adj*Adj^T
|
||||
}
|
||||
res(i,j) = ip.weight * qval / detJ * val;
|
||||
}
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
/**
|
||||
* A class that describes the Convection Equation using DG for Partial Assembly.
|
||||
*/
|
||||
class DGConvectionEquation
|
||||
{
|
||||
public:
|
||||
/**
|
||||
* Defines the Kernel to apply to the Domain
|
||||
*/
|
||||
static const PAOp OpName = BtDG;
|
||||
|
||||
/**
|
||||
* Defines the variables needed to build D for the Domain kernel
|
||||
*/
|
||||
struct Args {
|
||||
Args(VectorCoefficient& _q, double _a, double _b = 0.0) : q(_q), a(_a), b(_b) {}
|
||||
VectorCoefficient& q;
|
||||
double a;
|
||||
double b;
|
||||
};
|
||||
|
||||
/**
|
||||
* Returns the values of the D tensor at a given integration Point.
|
||||
*/
|
||||
void evalD(Tensor<1>& res, ElementTransformation *Tr, const IntegrationPoint& ip,
|
||||
const Tensor<2>& Jac, const Args& args)
|
||||
{
|
||||
const int dim = res.size(0);
|
||||
mfem::Vector qvec(dim);
|
||||
args.q.Eval(qvec, *Tr, ip);
|
||||
Tensor<2> Adj(dim,dim);
|
||||
adjugate(Jac,Adj);
|
||||
for (int i = 0; i < dim; ++i)
|
||||
{
|
||||
double val = 0.0;
|
||||
for (int j = 0; j < dim; ++j)
|
||||
{
|
||||
val += Adj(i,j) * qvec(j);
|
||||
}
|
||||
res(i) = ip.weight * args.a * val;
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Defines the Kernel to apply to the Faces
|
||||
*/
|
||||
static const PAOp FaceOpName = BtDB;
|
||||
|
||||
/**
|
||||
* Returns the values of the Dint and Dext tensors at a given integration Point for
|
||||
* each element over a face.
|
||||
*/
|
||||
void evalFaceD(double& res11, double& res21, double& res22, double& res12,
|
||||
const FaceElementTransformations* face_tr, const mfem::Vector& normal,
|
||||
const IntegrationPoint& ip1, const IntegrationPoint& ip2,
|
||||
const Tensor<2>& Jac1, const Tensor<2>& Jac2,
|
||||
const Args& args)
|
||||
{
|
||||
const int dim = normal.Size();
|
||||
mfem::Vector qvec(dim);
|
||||
// FIXME: qvec might be discontinuous if not constant with a periodic mesh
|
||||
// We should then use the evaluation on Elem2 and eip2
|
||||
args.q.Eval( qvec, *(face_tr->Elem1), ip1 );
|
||||
const double res = qvec * normal;
|
||||
const double a = -args.a, b = args.b;
|
||||
res11 = ip1.weight * ( a/2 * res + b * abs(res) );
|
||||
res21 = ip1.weight * ( a/2 * res - b * abs(res) );
|
||||
res22 = ip1.weight * ( - a/2 * res + b * abs(res) );
|
||||
res12 = ip1.weight * ( - a/2 * res - b * abs(res) );
|
||||
}
|
||||
};
|
||||
|
||||
class FCTEquation
|
||||
{
|
||||
public:
|
||||
struct Args {
|
||||
VectorCoefficient& q;
|
||||
mfem::Vector& d_e;
|
||||
double a;
|
||||
double b;
|
||||
};
|
||||
|
||||
static const PAOp FaceOpName = BtDB;
|
||||
|
||||
void evalFaceD(double& res11, double& res21, double& res22, double& res12,
|
||||
const FaceElementTransformations* face_tr, const mfem::Vector& normal,
|
||||
const IntegrationPoint& ip1, const IntegrationPoint& ip2,
|
||||
const Tensor<2>& Jac1, const Tensor<2>& Jac2,
|
||||
const Args& args)
|
||||
{
|
||||
const int dim = normal.Size();
|
||||
mfem::Vector qvec(dim);
|
||||
// FIXME: qvec might be discontinuous if not constant with a periodic mesh
|
||||
// We should then use the evaluation on Elem2 and eip2
|
||||
args.q.Eval( qvec, *(face_tr->Elem1), ip1 );
|
||||
const double res = qvec * normal;
|
||||
const double a = -args.a, b = args.b;
|
||||
res11 = 0.0; //ip1.weight * ( a/2 * res + b * abs(res) );
|
||||
res21 = 0.0; //ip1.weight * ( a/2 * res - b * abs(res) );
|
||||
res22 = 0.0; //ip1.weight * ( - a/2 * res + b * abs(res) );
|
||||
res12 = 0.0; //ip1.weight * ( - a/2 * res - b * abs(res) );
|
||||
}
|
||||
};
|
||||
|
||||
/**
|
||||
* A class that describes a Mass Equation using Partial Assembly
|
||||
*/
|
||||
class MassEquation
|
||||
{
|
||||
public:
|
||||
static const PAOp OpName = BtDB;
|
||||
|
||||
struct ArgsEmpty{};
|
||||
|
||||
void evalD(double& res, ElementTransformation* Tr, const IntegrationPoint& ip,
|
||||
const Tensor<2>& Jac, const ArgsEmpty& args)
|
||||
{
|
||||
res = ip.weight * det(Jac);
|
||||
}
|
||||
|
||||
struct ArgsCoeff
|
||||
{
|
||||
ArgsCoeff(Coefficient& coeff): coeff(coeff) {}
|
||||
Coefficient& coeff;
|
||||
};
|
||||
|
||||
void evalD(double& res, ElementTransformation* Tr, const IntegrationPoint& ip,
|
||||
const Tensor<2>& Jac, const ArgsCoeff& args)
|
||||
{
|
||||
res = args.coeff.Eval(*Tr, ip) * ip.weight * det(Jac);
|
||||
}
|
||||
|
||||
void evalD(double& res, ElementTransformation* Tr, const IntegrationPoint& ip,
|
||||
const Tensor<2>& Jac, Coefficient& coeff)
|
||||
{
|
||||
res = coeff.Eval(*Tr, ip) * ip.weight * det(Jac);
|
||||
}
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
#endif //MFEM_DGPABILININTEG
|
||||
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,128 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#include "backend.hpp"
|
||||
#include "bilinearform.hpp"
|
||||
#include "../../general/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
void Engine::Init(const std::string &engine_spec)
|
||||
{
|
||||
//
|
||||
// Initialize inherited fields
|
||||
//
|
||||
memory_resources[0] = NULL;
|
||||
workers_weights[0] = 1.0;
|
||||
workers_mem_res[0] = 0;
|
||||
}
|
||||
|
||||
Engine::Engine()
|
||||
: mfem::Engine(NULL, 1, 1)
|
||||
{
|
||||
Init("");
|
||||
}
|
||||
|
||||
Engine::Engine(const std::string &engine_spec)
|
||||
: mfem::Engine(NULL, 1, 1)
|
||||
{
|
||||
Init(engine_spec);
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
Engine::Engine(MPI_Comm _comm, const std::string &engine_spec)
|
||||
: mfem::Engine(NULL, 1, 1)
|
||||
{
|
||||
comm = _comm;
|
||||
Init(engine_spec);
|
||||
}
|
||||
#endif
|
||||
|
||||
DLayout Engine::MakeLayout(std::size_t size) const
|
||||
{
|
||||
return DLayout(new Layout(*this, size));
|
||||
}
|
||||
|
||||
DLayout Engine::MakeLayout(const mfem::Array<std::size_t> &offsets) const
|
||||
{
|
||||
MFEM_ASSERT(offsets.Size() == 2,
|
||||
"multiple workers are not supported yet");
|
||||
return DLayout(new Layout(*this, offsets.Last()));
|
||||
}
|
||||
|
||||
DArray Engine::MakeArray(PLayout &layout, std::size_t item_size) const
|
||||
{
|
||||
MFEM_ASSERT(dynamic_cast<Layout *>(&layout) != NULL,
|
||||
"invalid input layout");
|
||||
Layout *lt = static_cast<Layout *>(&layout);
|
||||
return DArray(new Array(*lt, item_size));
|
||||
}
|
||||
|
||||
DVector Engine::MakeVector(PLayout &layout, int type_id) const
|
||||
{
|
||||
MFEM_ASSERT(dynamic_cast<Layout *>(&layout) != NULL,
|
||||
"invalid input layout");
|
||||
Layout *lt = static_cast<Layout *>(&layout);
|
||||
switch (type_id)
|
||||
{
|
||||
case ScalarId<double>::value:
|
||||
return DVector(new Vector<double>(*lt));
|
||||
case ScalarId<std::complex<double>>::value:
|
||||
return DVector(new Vector<std::complex<double>>(*lt));
|
||||
// case ScalarId<int>::value:
|
||||
// return DVector(new Vector<int>(*lt));
|
||||
default:
|
||||
mfem_error("Invalid type_id");
|
||||
}
|
||||
}
|
||||
|
||||
DFiniteElementSpace Engine::MakeFESpace(mfem::FiniteElementSpace &fespace) const
|
||||
{
|
||||
return DFiniteElementSpace(new FiniteElementSpace(*this, fespace));
|
||||
}
|
||||
|
||||
DBilinearForm Engine::MakeBilinearForm(mfem::BilinearForm &bf) const
|
||||
{
|
||||
return DBilinearForm(new BilinearForm(*this, bf));
|
||||
}
|
||||
|
||||
void Engine::AssembleLinearForm(LinearForm &l_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
}
|
||||
|
||||
mfem::Operator *Engine::MakeOperator(const MixedBilinearForm &mbl_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
mfem::Operator *Engine::MakeOperator(const NonlinearForm &nl_form) const
|
||||
{
|
||||
/// FIXME - What will the actual parameters be?
|
||||
MFEM_ABORT("FIXME");
|
||||
return NULL;
|
||||
}
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
@@ -0,0 +1,91 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_PA_ENGINE_HPP
|
||||
#define MFEM_BACKENDS_PA_ENGINE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#include "../base/backend.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
class Engine : public mfem::Engine
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// mfem::Backend *backend;
|
||||
#ifdef MFEM_USE_MPI
|
||||
// MPI_Comm comm;
|
||||
#endif
|
||||
// int num_mem_res;
|
||||
// int num_workers;
|
||||
// MemoryResource **memory_resources;
|
||||
// double *workers_weights;
|
||||
// int *workers_mem_res;
|
||||
|
||||
void Init(const std::string &engine_spec);
|
||||
|
||||
public:
|
||||
Engine();
|
||||
Engine(const std::string &engine_spec);
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
Engine(MPI_Comm comm, const std::string &engine_spec);
|
||||
#endif
|
||||
|
||||
virtual ~Engine() { }
|
||||
|
||||
/**
|
||||
@name Virtual interface: finite element data structures and algorithms
|
||||
*/
|
||||
///@{
|
||||
|
||||
virtual DLayout MakeLayout(std::size_t size) const;
|
||||
virtual DLayout MakeLayout(const mfem::Array<std::size_t> &offsets) const;
|
||||
|
||||
virtual DArray MakeArray(PLayout &layout, std::size_t item_size) const;
|
||||
|
||||
virtual DVector MakeVector(PLayout &layout,
|
||||
int type_id = ScalarId<double>::value) const;
|
||||
|
||||
virtual DFiniteElementSpace MakeFESpace(mfem::FiniteElementSpace &
|
||||
fespace) const;
|
||||
|
||||
virtual DBilinearForm MakeBilinearForm(mfem::BilinearForm &bf) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual void AssembleLinearForm(LinearForm &l_form) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual mfem::Operator *MakeOperator(const MixedBilinearForm &mbl_form) const;
|
||||
|
||||
/// FIXME - What will the actual parameters be?
|
||||
virtual mfem::Operator *MakeOperator(const NonlinearForm &nl_form) const;
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#endif // MFEM_BACKENDS_PA_ENGINE_HPP
|
||||
@@ -0,0 +1,137 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "facekernels.hpp"
|
||||
|
||||
namespace mfem{
|
||||
|
||||
namespace pa{
|
||||
|
||||
void Permutation::Permutation2d(int face_id, int nbe, int dofs1d, const Tensor3d& T0, Tensor3d& T0p) const
|
||||
{
|
||||
for (int e = 0; e < nbe; ++e)
|
||||
{
|
||||
const int trial = kernel_data(e,face_id).indirection;
|
||||
const int permutation = kernel_data(e,face_id).permutation;
|
||||
if(trial!=-1)
|
||||
{
|
||||
switch(permutation)
|
||||
{
|
||||
case 0:
|
||||
for (int i2 = 0; i2 < dofs1d; ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < dofs1d; ++i1)
|
||||
{
|
||||
T0p(i1,i2,e) = T0(i1,i2,trial);
|
||||
}
|
||||
}
|
||||
break;
|
||||
case 1:
|
||||
for (int i2 = 0, j1 = dofs1d-1; i2 < dofs1d; ++i2, --j1)
|
||||
{
|
||||
for (int i1 = 0, j2 = 0; i1 < dofs1d; ++i1, ++j2)
|
||||
{
|
||||
T0p(i1,i2,e) = T0(j1,j2,trial);
|
||||
}
|
||||
}
|
||||
break;
|
||||
case 2:
|
||||
for (int i2 = 0, j2 = dofs1d-1; i2 < dofs1d; ++i2, --j2)
|
||||
{
|
||||
for (int i1 = 0, j1 = dofs1d-1; i1 < dofs1d; ++i1, --j1)
|
||||
{
|
||||
T0p(i1,i2,e) = T0(j1,j2,trial);
|
||||
}
|
||||
}
|
||||
break;
|
||||
case 3:
|
||||
for (int i2 = 0, j1 = 0; i2 < dofs1d; ++i2, ++j1)
|
||||
{
|
||||
for (int i1 = 0, j2 = dofs1d-1; i1 < dofs1d; ++i1, --j2)
|
||||
{
|
||||
T0p(i1,i2,e) = T0(j1,j2,trial);
|
||||
}
|
||||
}
|
||||
break;
|
||||
default:
|
||||
mfem_error("This permutation id does not exist in 2D");
|
||||
}
|
||||
}else{
|
||||
for (int i2 = 0; i2 < dofs1d; ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < dofs1d; ++i1)
|
||||
{
|
||||
T0p(i1,i2,e) = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* The Permutation3d works differently than the 2d version, here we receive a change of basis matrix encrypted in one integer.
|
||||
*/
|
||||
void Permutation::Permutation3d(int face_id, int nbe, int dofs1d, const Tensor4d& T0, Tensor4d& T0p) const
|
||||
{
|
||||
const double* U = T0.getData();
|
||||
int elt, ii, jj, kk;
|
||||
const int step_elt = dofs1d*dofs1d*dofs1d;
|
||||
for (int e = 0; e < nbe; ++e)
|
||||
{
|
||||
const int trial = kernel_data(e,face_id).indirection;
|
||||
const int permutation = kernel_data(e,face_id).permutation;
|
||||
if (trial!=-1)
|
||||
{
|
||||
elt = trial*step_elt;
|
||||
IntMatrix P(3,3);
|
||||
GetChangeOfBasis(permutation, P);
|
||||
int begin_ii = (P(0,0)==-1)*(dofs1d-1) + (P(1,0)==-1)*(dofs1d*dofs1d-1) + (P(2,0)==-1)*(dofs1d*dofs1d*dofs1d-1);
|
||||
int begin_jj = (P(0,1)==-1)*(dofs1d-1) + (P(1,1)==-1)*(dofs1d*dofs1d-1) + (P(2,1)==-1)*(dofs1d*dofs1d*dofs1d-1);
|
||||
int begin_kk = (P(0,2)==-1)*(dofs1d-1) + (P(1,2)==-1)*(dofs1d*dofs1d-1) + (P(2,2)==-1)*(dofs1d*dofs1d*dofs1d-1);
|
||||
int step_ii = P(0,0) + P(1,0)*dofs1d + P(2,0)*dofs1d*dofs1d;
|
||||
int step_jj = P(0,1) + P(1,1)*dofs1d + P(2,1)*dofs1d*dofs1d;
|
||||
int step_kk = P(0,2) + P(1,2)*dofs1d + P(2,2)*dofs1d*dofs1d;
|
||||
kk = begin_kk;
|
||||
for (int k = 0; k < dofs1d; ++k)
|
||||
{
|
||||
jj = begin_jj;
|
||||
for (int j = 0; j < dofs1d; ++j)
|
||||
{
|
||||
ii = begin_ii;
|
||||
for (int i = 0; i < dofs1d; ++i)
|
||||
{
|
||||
T0p(i,j,k,e) = U[ elt + ii + jj + kk ];
|
||||
ii += step_ii;
|
||||
}
|
||||
jj += step_jj;
|
||||
}
|
||||
kk += step_kk;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
for (int k = 0; k < dofs1d; ++k)
|
||||
{
|
||||
for (int j = 0; j < dofs1d; ++j)
|
||||
{
|
||||
for (int i = 0; i < dofs1d; ++i)
|
||||
{
|
||||
T0p(i,j,k,e) = 0.0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,185 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#include "fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
FiniteElementSpace::FiniteElementSpace(const Engine &e,
|
||||
mfem::FiniteElementSpace &fespace)
|
||||
: PFiniteElementSpace(e, fespace),
|
||||
e_layout(e, 0),
|
||||
tensor_offsets(NULL),
|
||||
tensor_indices(NULL)
|
||||
{
|
||||
std::size_t lsize = 0;
|
||||
for (int e = 0; e < fespace.GetNE(); e++) { lsize += fespace.GetFE(e)->GetDof(); }
|
||||
e_layout.Resize(lsize);
|
||||
e_layout.DontDelete();
|
||||
}
|
||||
|
||||
void FiniteElementSpace::BuildDofMaps()
|
||||
{
|
||||
mfem::FiniteElementSpace *mfem_fes = fes;
|
||||
|
||||
const int local_size = GetELayout().Size();
|
||||
const int global_size = mfem_fes->GetVLayout()->Size();
|
||||
const int vdim = mfem_fes->GetVDim();
|
||||
|
||||
// Now we can allocate and fill the global map
|
||||
tensor_offsets = new mfem::Array<int>(*(new Layout(GetEngine(), global_size + 1)));
|
||||
tensor_indices = new mfem::Array<int>(*(new Layout(GetEngine(), local_size)));
|
||||
|
||||
mfem::Array<int> &offsets = *tensor_offsets;
|
||||
mfem::Array<int> &indices = *tensor_indices;
|
||||
|
||||
mfem::Array<int> global_map(local_size);
|
||||
mfem::Array<int> elem_vdof;
|
||||
|
||||
int offset = 0;
|
||||
for (int e = 0; e < mfem_fes->GetNE(); e++)
|
||||
{
|
||||
const FiniteElement *fe = mfem_fes->GetFE(e);
|
||||
const int dofs = fe->GetDof();
|
||||
const int vdofs = dofs * vdim;
|
||||
const TensorBasisElement *tfe = dynamic_cast<const TensorBasisElement *>(fe);
|
||||
const mfem::Array<int> &dof_map = tfe->GetDofMap();
|
||||
|
||||
mfem_fes->GetElementVDofs(e, elem_vdof);
|
||||
|
||||
if (dof_map.Size()==0)
|
||||
{
|
||||
for (int vd = 0; vd < vdim; vd++)
|
||||
for (int i = 0; i < vdofs; i++)
|
||||
{
|
||||
global_map[offset + dofs*vd + i] = elem_vdof[dofs*vd + i];
|
||||
}
|
||||
}else{
|
||||
for (int vd = 0; vd < vdim; vd++)
|
||||
for (int i = 0; i < vdofs; i++)
|
||||
{
|
||||
global_map[offset + dofs*vd + i] = elem_vdof[dofs*vd + dof_map[i]];
|
||||
}
|
||||
}
|
||||
offset += vdofs;
|
||||
}
|
||||
|
||||
// global_map[i] = index in global vector for local dof i
|
||||
// NOTE: multiple i values will yield same global_map[i] for shared DOF.
|
||||
|
||||
// We want to now invert this map so we have indices[j] = (local dof for global dof j).
|
||||
|
||||
// Zero the offset vector
|
||||
offsets = 0;
|
||||
|
||||
// Keep track of how many local dof point to its global dof
|
||||
// Count how many times each dof gets hit
|
||||
for (int i = 0; i < local_size; i++)
|
||||
{
|
||||
const int g = global_map[i];
|
||||
++offsets[g + 1];
|
||||
}
|
||||
// Aggregate the offsets
|
||||
for (int i = 1; i <= global_size; i++)
|
||||
{
|
||||
offsets[i] += offsets[i - 1];
|
||||
}
|
||||
|
||||
for (int i = 0; i < local_size; i++)
|
||||
{
|
||||
const int g = global_map[i];
|
||||
indices[offsets[g]++] = i;
|
||||
}
|
||||
|
||||
// Shift the offset vector back by one, since it was used as a
|
||||
// counter above.
|
||||
for (int i = global_size; i > 0; i--)
|
||||
{
|
||||
offsets[i] = offsets[i - 1];
|
||||
}
|
||||
offsets[0] = 0;
|
||||
|
||||
offsets.Push();
|
||||
indices.Push();
|
||||
}
|
||||
|
||||
/// Convert an E vector to L vector
|
||||
void FiniteElementSpace::ToLVector(const Vector<double>& e_vector, Vector<double>& l_vector)
|
||||
{
|
||||
if (tensor_indices == NULL) BuildDofMaps();
|
||||
|
||||
if (l_vector.Size() != (std::size_t) GetFESpace()->GetVSize())
|
||||
{
|
||||
l_vector.Resize<double>(GetFESpace()->GetVLayout(), NULL);
|
||||
}
|
||||
|
||||
const int lsize = l_vector.Size();
|
||||
const int *offsets = tensor_offsets->Get_PArray()->As<Array>().GetTypedData<int>();
|
||||
const int *indices = tensor_indices->Get_PArray()->As<Array>().GetTypedData<int>();
|
||||
|
||||
const double *e_data = e_vector.GetData();
|
||||
double *l_data = l_vector.GetData();
|
||||
|
||||
for (int i = 0; i < lsize; i++)
|
||||
{
|
||||
const int offset = offsets[i];
|
||||
const int next_offset = offsets[i + 1];
|
||||
double dof_value = 0;
|
||||
for (int j = offset; j < next_offset; j++)
|
||||
{
|
||||
dof_value += e_data[indices[j]];
|
||||
}
|
||||
l_data[i] = dof_value;
|
||||
}
|
||||
}
|
||||
|
||||
/// Covert an L vector to E vector
|
||||
void FiniteElementSpace::ToEVector(const Vector<double>& l_vector, Vector<double>& e_vector)
|
||||
{
|
||||
if (tensor_indices == NULL) BuildDofMaps();
|
||||
|
||||
if (e_vector.Size() != (std::size_t) e_layout.Size())
|
||||
{
|
||||
e_vector.Resize<double>(GetELayout(), NULL);
|
||||
}
|
||||
|
||||
const int lsize = l_vector.Size();
|
||||
const int *offsets = tensor_offsets->Get_PArray()->As<Array>().GetTypedData<int>();
|
||||
const int *indices = tensor_indices->Get_PArray()->As<Array>().GetTypedData<int>();
|
||||
|
||||
const double *l_data = l_vector.GetData();
|
||||
double *e_data = e_vector.GetData();
|
||||
|
||||
for (int i = 0; i < lsize; i++)
|
||||
{
|
||||
const int offset = offsets[i];
|
||||
const int next_offset = offsets[i + 1];
|
||||
const double dof_value = l_data[i];
|
||||
for (int j = offset; j < next_offset; j++)
|
||||
{
|
||||
e_data[indices[j]] = dof_value;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
@@ -0,0 +1,88 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_PA_FESPACE_HPP
|
||||
#define MFEM_BACKENDS_PA_FESPACE_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#include "engine.hpp"
|
||||
#include "array.hpp"
|
||||
#include "vector.hpp"
|
||||
#include "../../fem/fem.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
/// TODO: doxygen
|
||||
class FiniteElementSpace : public mfem::PFiniteElementSpace
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// mfem::FiniteElementSpace *fes;
|
||||
|
||||
Layout e_layout;
|
||||
|
||||
mfem::Array<int> *tensor_offsets, *tensor_indices;
|
||||
|
||||
void BuildDofMaps();
|
||||
|
||||
public:
|
||||
FiniteElementSpace() = delete;
|
||||
|
||||
/// Nearly-empty class that stores a pointer to a mfem::FiniteElementSpace instance and the engine
|
||||
FiniteElementSpace(const Engine &e, mfem::FiniteElementSpace &fespace);
|
||||
|
||||
/// Virtual destructor
|
||||
virtual ~FiniteElementSpace()
|
||||
{
|
||||
delete tensor_offsets;
|
||||
delete tensor_indices;
|
||||
}
|
||||
|
||||
Layout &GetELayout() { return e_layout; }
|
||||
|
||||
/// Return the engine as an OpenMP engine
|
||||
const Engine &GetEngine() { return static_cast<const Engine&>(*engine); }
|
||||
|
||||
/// Convert an E vector to L vector
|
||||
void ToLVector(const Vector<double>& e_vector, Vector<double>& l_vector);
|
||||
|
||||
/// Covert an L vector to E vector
|
||||
void ToEVector(const Vector<double>& l_vector, Vector<double>& e_vector);
|
||||
|
||||
const FiniteElement *GetFE(int i) const { return fes->GetFE(i); }
|
||||
|
||||
/// Returns number of degrees of freedom in each direction.
|
||||
inline const int GetNDofs1d() const { return GetFE(0)->GetOrder() + 1; }
|
||||
|
||||
/// Returns number of quadrature points in each direction.
|
||||
inline const int GetNQuads1d(const int order) const
|
||||
{
|
||||
const IntegrationRule &ir1d = IntRules.Get(Geometry::SEGMENT, order);
|
||||
return ir1d.GetNPoints();
|
||||
}
|
||||
};
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#endif // MFEM_BACKENDS_PA_FESPACE_HPP
|
||||
@@ -0,0 +1,51 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_PA_INTEGRATOR_HPP
|
||||
#define MFEM_BACKENDS_PA_INTEGRATOR_HPP
|
||||
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#include "vector.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
/**
|
||||
* A simple class to represent a backend partial Assembly Integrator.
|
||||
*/
|
||||
class TensorBilinearFormIntegrator
|
||||
{
|
||||
public:
|
||||
virtual ~TensorBilinearFormIntegrator() { }
|
||||
|
||||
virtual void ReassembleOperator() = 0;
|
||||
|
||||
virtual void ComputeElementMatrices(DenseTensor &element_matrices)
|
||||
{ mfem_error("TensorBilinaerFormIntegrator::ComputeElementMatrices is not overloaded"); }
|
||||
|
||||
virtual void MultAdd(const Vector<double>& x, Vector<double>& y) const = 0;
|
||||
|
||||
virtual void Mult(const Vector<double>& x, Vector<double>& y) const
|
||||
{ y.Fill<double>(0.0); MultAdd(x, y); }
|
||||
};
|
||||
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#endif // MFEM_BACKENDS_PA_INTEGRATOR_HPP
|
||||
@@ -0,0 +1,40 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#include "layout.hpp"
|
||||
#include "../../general/array.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
void Layout::Resize(std::size_t new_size)
|
||||
{
|
||||
size = new_size;
|
||||
}
|
||||
|
||||
void Layout::Resize(const Array<std::size_t> &offsets)
|
||||
{
|
||||
MFEM_ASSERT(offsets.Size() == 2,
|
||||
"multiple workers are not supported yet");
|
||||
size = offsets.Last();
|
||||
}
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
@@ -0,0 +1,73 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_PA_LAYOUT_HPP
|
||||
#define MFEM_BACKENDS_PA_LAYOUT_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#include "../base/layout.hpp"
|
||||
#include "engine.hpp"
|
||||
#include <stdlib.h>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
class Layout : public PLayout
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// SharedPtr<const mfem::Engine> engine;
|
||||
// std::size_t size;
|
||||
|
||||
public:
|
||||
Layout(const Engine &e, std::size_t s = 0) : PLayout(e, s) { }
|
||||
|
||||
virtual ~Layout() { }
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
template <typename T>
|
||||
T* Alloc(std::size_t size) const
|
||||
{
|
||||
return new T[size];
|
||||
}
|
||||
|
||||
void* Alloc(std::size_t size) const
|
||||
{
|
||||
return new char[size];
|
||||
}
|
||||
|
||||
/// Resize the layout
|
||||
virtual void Resize(std::size_t new_size);
|
||||
|
||||
/// Resize the layout based on the given worker offsets
|
||||
virtual void Resize(const Array<std::size_t> &offsets);
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
};
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#endif // MFEM_BACKENDS_PA_LAYOUT_HPP
|
||||
@@ -0,0 +1,261 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
// This file contains operator-based bilinear form integrators used
|
||||
// with BilinearFormOperator.
|
||||
|
||||
#ifndef MFEM_PAK
|
||||
#define MFEM_PAK
|
||||
|
||||
// #include "fem.hpp"
|
||||
// #include "../config/config.hpp"
|
||||
// #include "bilininteg.hpp"
|
||||
// #include "dalg.hpp"
|
||||
// #include "dgfacefunctions.hpp"
|
||||
#include "domainkernels.hpp"
|
||||
#include "facekernels.hpp"
|
||||
// #include "solverkernels.hpp"
|
||||
// #include <iostream>
|
||||
#include "integrator.hpp"
|
||||
#include "dgpabilininteg.hpp"
|
||||
#include "tensor.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
/////////////////////////////////////////////////
|
||||
// //
|
||||
// //
|
||||
// PARTIAL ASSEMBLY INTEGRATORS //
|
||||
// //
|
||||
// //
|
||||
/////////////////////////////////////////////////
|
||||
|
||||
|
||||
/////////////////////////////
|
||||
// Domain Kernel Interface //
|
||||
/////////////////////////////
|
||||
|
||||
/**
|
||||
* A partial assembly Integrator class for domain integrals.
|
||||
* Takes an 'Equation' template parameter, that must contain 'OpName' of
|
||||
* type 'PAOp' and a function named 'evalD', that receives a 'res' vector,
|
||||
* the element transformation and the integration point, and then whatever
|
||||
* is needed to compute at the point (Coefficient, VectorCoeffcient, etc...).
|
||||
* The 'IMPL' template parameter allows to switch between different implementations
|
||||
* of the tensor contraction kernels.
|
||||
*/
|
||||
template < typename Equation, typename Vector = mfem::Vector,
|
||||
template<typename, PAOp, typename> class IMPL = DomainMult>
|
||||
class PADomainInt
|
||||
: public TensorBilinearFormIntegrator, public IMPL<Equation, Equation::OpName, Vector>
|
||||
{
|
||||
private:
|
||||
typedef IMPL<Equation, Equation::OpName, Vector> Op;
|
||||
|
||||
public:
|
||||
/**
|
||||
* The constructor is templated so that the argument needed for 'evalD' can be
|
||||
* packed arbitrarily ('evalD' with the corresponding signature must exist).
|
||||
*/
|
||||
template <typename Args>
|
||||
PADomainInt(mfem::FiniteElementSpace *fes, const int order, Args& args)
|
||||
: Op(fes, order, args)
|
||||
{
|
||||
const int nb_elts = fes->GetNE();
|
||||
const IntegrationRule& ir = IntRules.Get(fes->GetFE(0)->GetGeomType(), order);
|
||||
const int quads = ir.GetNPoints();
|
||||
const FiniteElement* fe = fes->GetFE(0);
|
||||
const int dim = fe->GetDim();
|
||||
this->InitD(dim, quads, nb_elts);
|
||||
Tensor<1> Jac1D(dim * dim * quads * nb_elts);
|
||||
EvalJacobians(dim, fes, order, Jac1D);
|
||||
Tensor<4> Jac(Jac1D.getData(), dim, dim, quads, nb_elts);
|
||||
for (int e = 0; e < nb_elts; ++e)
|
||||
{
|
||||
ElementTransformation *Tr = fes->GetElementTransformation(e);
|
||||
for (int k = 0; k < quads; ++k)
|
||||
{
|
||||
Tensor<2> J_ek(&Jac(0, 0, k, e), dim, dim);
|
||||
const IntegrationPoint &ip = ir.IntPoint(k);
|
||||
Tr->SetIntPoint(&ip);
|
||||
this->evalEq(dim, k, e, Tr, ip, J_ek, args);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
const typename Op::DTensor& getD() const
|
||||
{
|
||||
return Op::getD();
|
||||
}
|
||||
|
||||
/**
|
||||
* Applies the partial assembly operator.
|
||||
*/
|
||||
virtual void MultAdd(const Vector& u, Vector& v) const
|
||||
{
|
||||
int dim = this->fes->GetFE(0)->GetDim();
|
||||
switch (dim)
|
||||
{
|
||||
case 1: this->Mult1d(u, v); break;
|
||||
case 2: this->Mult2d(u, v); break;
|
||||
case 3: this->Mult3d(u, v); break;
|
||||
default: mfem_error("More than # dimension not yet supported"); break;
|
||||
}
|
||||
}
|
||||
|
||||
virtual void ReassembleOperator() { }
|
||||
|
||||
};
|
||||
|
||||
///////////////////////////
|
||||
// Face Kernel Interface //
|
||||
///////////////////////////
|
||||
|
||||
/**
|
||||
* A partial assembly Integrator interface class for face integrals.
|
||||
* The template parameters have the same role as for 'PADomainInt'.
|
||||
*/
|
||||
template <typename Equation, typename Vector = mfem::Vector,
|
||||
template<typename, PAOp, typename> class IMPL = FaceMult>
|
||||
class PAFaceInt
|
||||
: public TensorBilinearFormIntegrator, public IMPL<Equation, Equation::FaceOpName, Vector>
|
||||
{
|
||||
private:
|
||||
typedef IMPL<Equation, Equation::FaceOpName, Vector> Op;
|
||||
|
||||
public:
|
||||
template <typename Args>
|
||||
PAFaceInt(mfem::FiniteElementSpace* fes, const int order, Args& args)
|
||||
: Op(fes, order, args)
|
||||
{
|
||||
const int dim = fes->GetFE(0)->GetDim();
|
||||
// const int quads1d = GetNQuads1d(order);
|
||||
// Mesh* mesh = fes->GetMesh();
|
||||
const int nb_elts = fes->GetNE();
|
||||
const int nb_faces_elt = 2 * dim;
|
||||
int geom;
|
||||
switch (dim) {
|
||||
case 1: geom = Geometry::POINT; break;
|
||||
case 2: geom = Geometry::SEGMENT; break;
|
||||
case 3: geom = Geometry::SQUARE; break;
|
||||
}
|
||||
const IntegrationRule& ir = IntRules.Get(geom, order);
|
||||
const int quads = ir.GetNPoints();
|
||||
this->init(dim, quads, nb_elts, nb_faces_elt);
|
||||
Assemble(fes, order, args);
|
||||
}
|
||||
|
||||
// Perform the action of the BilinearFormIntegrator
|
||||
virtual void MultAdd(const Vector& u, Vector& v) const
|
||||
{
|
||||
int dim = this->fes->GetFE(0)->GetDim();
|
||||
switch (dim)
|
||||
{
|
||||
case 1:
|
||||
mfem_error("Not yet implemented");
|
||||
break;
|
||||
case 2:
|
||||
this->EvalInt2D(u, v);
|
||||
this->EvalExt2D(u, v);
|
||||
break;
|
||||
case 3:
|
||||
this->EvalInt3D(u, v);
|
||||
this->EvalExt3D(u, v);
|
||||
break;
|
||||
default:
|
||||
mfem_error("Face Kernel does not exist for this dimension.");
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
virtual void ReassembleOperator() { }
|
||||
|
||||
private:
|
||||
template <typename Args>
|
||||
void Assemble(mfem::FiniteElementSpace* fes, const int order, Args& args)
|
||||
{
|
||||
const int dim = fes->GetFE(0)->GetDim();
|
||||
const int quads1d = GetNQuads1d(order);
|
||||
Mesh* mesh = fes->GetMesh();
|
||||
const int nb_elts = fes->GetNE();
|
||||
// const int nb_faces_elt = 2 * dim;
|
||||
const int nb_faces = mesh->GetNumFaces();
|
||||
int geom;
|
||||
switch (dim) {
|
||||
case 1: geom = Geometry::POINT; break;
|
||||
case 2: geom = Geometry::SEGMENT; break;
|
||||
case 3: geom = Geometry::SQUARE; break;
|
||||
}
|
||||
const IntegrationRule& ir = IntRules.Get(geom, order);
|
||||
const int quads = ir.GetNPoints();
|
||||
mfem::Vector qvec(dim);
|
||||
Tensor<1> normal(dim);
|
||||
mfem::Vector n(normal.getData(), dim);
|
||||
// Vector n(dim);
|
||||
// !!! Should not be recomputed... !!!
|
||||
Tensor<1> Jac1D(dim * dim * quads * quads1d * nb_elts);
|
||||
EvalJacobians(dim, fes, order, Jac1D);
|
||||
Tensor<4> Jac(Jac1D.getData(), dim, dim, quads * quads1d, nb_elts); // Creating a view
|
||||
// !!! !!!
|
||||
// We have a per face approach for the fluxes
|
||||
for (int face = 0; face < nb_faces; ++face)
|
||||
{
|
||||
int ind_elt1, ind_elt2;
|
||||
int face_id1, face_id2;
|
||||
int nb_rot1, nb_rot2;
|
||||
GetFaceInfo(mesh, face, ind_elt1, ind_elt2, face_id1, face_id2, nb_rot1, nb_rot2);
|
||||
FaceElementTransformations* face_tr = mesh->GetFaceElementTransformations(face);
|
||||
int perm1, perm2;
|
||||
// cout << "ind_elt1=" << ind_elt1 << ", face_id1=" << face_id1 << ", nb_rot1=" << nb_rot1 << ", ind_elt2=" << ind_elt2 << ", face_id2=" << face_id2 << ", nb_rot2=" << nb_rot2 << endl;
|
||||
for (int kf = 0; kf < quads; ++kf)
|
||||
{
|
||||
const IntegrationPoint& ip = ir.IntPoint(kf);
|
||||
if (ind_elt2 != -1) { //Not a boundary face
|
||||
Tensor<1, int> ind_f1(dim - 1), ind_f2(dim - 1);
|
||||
// We compute the lexicographical index on each face
|
||||
int k1 = GetFaceQuadIndex(dim, face_id1, nb_rot1, kf, quads1d, ind_f1);
|
||||
int k2 = GetFaceQuadIndex(dim, face_id2, nb_rot2, kf, quads1d, ind_f2);
|
||||
this->initFaceData(dim, ind_elt1, face_id1, nb_rot1, perm1, ind_elt2, face_id2, nb_rot2, perm2);
|
||||
face_tr->Face->SetIntPoint( &ip );
|
||||
IntegrationPoint eip1;
|
||||
face_tr->Loc1.Transform(ip, eip1);
|
||||
eip1.weight = ip.weight;//Sets the weight since Transform doesn't do it...
|
||||
IntegrationPoint eip2;
|
||||
face_tr->Loc2.Transform(ip, eip2);
|
||||
eip2.weight = ip.weight;//Sets the weight since Transform doesn't do it...
|
||||
int kg1 = GetGlobalQuadIndex(dim, face_id1, quads1d, ind_f1);
|
||||
int kg2 = GetGlobalQuadIndex(dim, face_id2, quads1d, ind_f2);
|
||||
Tensor<2> J_e1(&Jac(0, 0, kg1, ind_elt1), dim, dim);
|
||||
Tensor<2> J_e2(&Jac(0, 0, kg2, ind_elt2), dim, dim);
|
||||
Tensor<2> Adj(dim, dim);
|
||||
adjugate(J_e1, Adj);
|
||||
calcOrtho( Adj, face_id1, normal); // normal*determinant (risky, bug prone)
|
||||
this->evalEq(dim, k1, k2, n, ind_elt1, face_id1, ind_elt2, face_id2, face_tr, eip1, eip2, J_e1, J_e2, args);
|
||||
} else { //Boundary face
|
||||
this->initBoundaryFaceData(ind_elt1, face_id1);
|
||||
// TODO: Something should be done here when there is boundary conditions!
|
||||
// D11(ind) = 0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
#endif //MFEM_PAK
|
||||
@@ -0,0 +1,985 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
// This file contains operator-based bilinear form integrators used
|
||||
// with BilinearFormOperator.
|
||||
|
||||
#ifndef MFEM_TENSOR
|
||||
#define MFEM_TENSOR
|
||||
|
||||
// #include "bilininteg.hpp"
|
||||
// #include <vector>
|
||||
#include <iostream>
|
||||
#include "../../general/error.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
/**
|
||||
* A Class to compute the real indice from the multi-indice of a tensor
|
||||
*/
|
||||
template <int N, int Dim, typename T, typename... Args>
|
||||
class TensorInd
|
||||
{
|
||||
public:
|
||||
static int result(const int* sizes, T first, Args... args)
|
||||
{
|
||||
MFEM_ASSERT(first<sizes[N-1],"Trying to access out of boundary.");
|
||||
return first + sizes[N - 1] * TensorInd < N + 1, Dim, Args... >::result(sizes, args...);
|
||||
}
|
||||
};
|
||||
//Terminal case
|
||||
template <int Dim, typename T, typename... Args>
|
||||
class TensorInd<Dim, Dim, T, Args...>
|
||||
{
|
||||
public:
|
||||
static int result(const int* sizes, T first, Args... args)
|
||||
{
|
||||
MFEM_ASSERT(first<sizes[Dim-1],"Trying to access out of boundary.");
|
||||
return first;
|
||||
}
|
||||
};
|
||||
|
||||
/**
|
||||
* A class to initialize the size of a Tensor
|
||||
*/
|
||||
template <int N, int Dim, typename T, typename... Args>
|
||||
class Init
|
||||
{
|
||||
public:
|
||||
static int result(int* sizes, T first, Args... args) {
|
||||
sizes[N - 1] = first;
|
||||
return first * Init < N + 1, Dim, Args... >::result(sizes, args...);
|
||||
}
|
||||
};
|
||||
//Terminal case
|
||||
template <int Dim, typename T, typename... Args>
|
||||
class Init<Dim, Dim, T, Args...>
|
||||
{
|
||||
public:
|
||||
static int result(int* sizes, T first, Args... args) {
|
||||
sizes[Dim - 1] = first;
|
||||
return first;
|
||||
}
|
||||
};
|
||||
|
||||
/**
|
||||
* A basic generic Tensor class
|
||||
*/
|
||||
template<int Dim, typename Scalar = double>
|
||||
class Tensor
|
||||
{
|
||||
protected:
|
||||
int capacity;
|
||||
Scalar* data;
|
||||
bool own_data;
|
||||
int sizes[Dim];
|
||||
|
||||
public:
|
||||
/**
|
||||
* A default constructor
|
||||
*/
|
||||
explicit Tensor()
|
||||
: capacity(0), data(NULL), own_data(false)
|
||||
{
|
||||
}
|
||||
|
||||
/**
|
||||
* The destructor
|
||||
*/
|
||||
~Tensor()
|
||||
{
|
||||
if (own_data)
|
||||
{
|
||||
delete [] data;
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* A constructor to initialize the sizes of a tensor with an array of integers
|
||||
*/
|
||||
Tensor(int* _sizes)
|
||||
: own_data(true)
|
||||
{
|
||||
int nb = 1;
|
||||
for (int i = 0; i < Dim; ++i)
|
||||
{
|
||||
sizes[i] = _sizes[i];
|
||||
nb *= sizes[i];
|
||||
}
|
||||
capacity = nb;
|
||||
data = new Scalar[nb];
|
||||
}
|
||||
|
||||
/**
|
||||
* A constructor to initialize a tensor from a different size Tensor
|
||||
*/
|
||||
template <int Dim1, typename... Args>
|
||||
Tensor(Tensor<Dim1, Scalar>& t, Args... args)
|
||||
: own_data(false)
|
||||
{
|
||||
static_assert(sizeof...(args) == Dim, "Wrong number of arguments");
|
||||
// Initialize sizes, and compute the number of values
|
||||
long int nb = Init<1, Dim, Args...>::result(sizes, args...);
|
||||
capacity = nb;
|
||||
data = t.getData();
|
||||
}
|
||||
|
||||
/**
|
||||
* A constructor to initialize the sizes of a tensor with a variadic function
|
||||
*/
|
||||
template <typename... Args>
|
||||
Tensor(Args... args)
|
||||
: own_data(true)
|
||||
{
|
||||
static_assert(sizeof...(args) == Dim, "Wrong number of arguments");
|
||||
// Initialize sizes, and compute the number of values
|
||||
long int nb = Init<1, Dim, Args...>::result(sizes, args...);
|
||||
capacity = nb;
|
||||
data = new Scalar[nb];
|
||||
}
|
||||
|
||||
/**
|
||||
* A constructor to initialize a tensor from the Scalar array _data
|
||||
*/
|
||||
template <typename... Args>
|
||||
Tensor(Scalar* _data, Args... args)
|
||||
: own_data(false)
|
||||
{
|
||||
static_assert(sizeof...(args) == Dim, "Wrong number of arguments");
|
||||
// Initialize sizes, and compute the number of values
|
||||
long int nb = Init<1, Dim, Args...>::result(sizes, args...);
|
||||
capacity = nb;
|
||||
data = _data;
|
||||
}
|
||||
|
||||
// Let's write some uggly code
|
||||
template <typename... Args>
|
||||
Tensor(const Scalar* _data, Args... args)
|
||||
: own_data(false)
|
||||
{
|
||||
static_assert(sizeof...(args) == Dim, "Wrong number of arguments");
|
||||
// Initialize sizes, and compute the number of values
|
||||
long int nb = Init<1, Dim, Args...>::result(sizes, args...);
|
||||
capacity = nb;
|
||||
data = const_cast<Scalar*>(_data);
|
||||
}
|
||||
|
||||
/**
|
||||
* A copy constructor
|
||||
*/
|
||||
Tensor(const Tensor& t)
|
||||
: capacity(t.length()), data(new Scalar[capacity]), own_data(true)
|
||||
{
|
||||
for (int i = 0; i < Dim; ++i)
|
||||
{
|
||||
sizes[i] = t.size(i);
|
||||
}
|
||||
const Scalar* data_t = t.getData();
|
||||
for (int i = 0; i < capacity; ++i)
|
||||
{
|
||||
data[i] = data_t[i];
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* A copy assignment operator (do not resize Tensors)
|
||||
*/
|
||||
Tensor& operator=(const Tensor& t)
|
||||
{
|
||||
if (this == &t)
|
||||
{
|
||||
return *this;
|
||||
}
|
||||
const int nb = t.length();
|
||||
for (int i = 0; i < Dim; ++i)
|
||||
{
|
||||
if (sizes[i] != t.size(i))
|
||||
{
|
||||
// std::cout << sizes[i] << " | " << t.size(i) << std::endl;
|
||||
mfem_error("The Tensors have different sizes.");
|
||||
}
|
||||
// sizes[i] = t.size(i);
|
||||
}
|
||||
for (int i = 0; i < nb; ++i)
|
||||
{
|
||||
data[i] = t[i];
|
||||
}
|
||||
return *this;
|
||||
}
|
||||
|
||||
/**
|
||||
* Operator += for Tensors of the same size.
|
||||
*/
|
||||
Tensor& operator+=(const Tensor& t)
|
||||
{
|
||||
const int nb = t.length();
|
||||
for (int i = 0; i < Dim; ++i)
|
||||
{
|
||||
if (sizes[i] != t.size(i))
|
||||
{
|
||||
// std::cout << sizes[i] << " | " << t.size(i) << std::endl;
|
||||
mfem_error("The Tensors have different sizes.");
|
||||
}
|
||||
// sizes[i] = t.size(i);
|
||||
}
|
||||
for (int i = 0; i < nb; ++i)
|
||||
{
|
||||
data[i] += t[i];
|
||||
}
|
||||
return *this;
|
||||
}
|
||||
|
||||
/**
|
||||
* Sets the size of the tensor, and allocate memory if necessary
|
||||
*/
|
||||
template <typename... Args>
|
||||
void setSize(Args... args)
|
||||
{
|
||||
static_assert(sizeof...(args) == Dim, "Wrong number of arguments");
|
||||
// Initialize sizes, and compute the number of values
|
||||
long int nb = Init<1, Dim, Args...>::result(sizes, args...);
|
||||
if (nb > capacity)
|
||||
{
|
||||
Scalar* _data = new Scalar[nb];
|
||||
for (int i = 0; i < capacity; ++i)
|
||||
{
|
||||
_data[i] = data[i];
|
||||
}
|
||||
for (int i = capacity; i < nb; ++i)
|
||||
{
|
||||
_data[i] = Scalar();
|
||||
}
|
||||
if (own_data)
|
||||
{
|
||||
delete [] data;
|
||||
}
|
||||
data = _data;
|
||||
own_data = true;
|
||||
capacity = nb;
|
||||
}
|
||||
}
|
||||
|
||||
Tensor& setView(Scalar* ptr){
|
||||
MFEM_ASSERT(own_data,"you should get rid of your data first.");
|
||||
data = ptr;
|
||||
return *this;
|
||||
}
|
||||
|
||||
/**
|
||||
* A const accessor for the data
|
||||
*/
|
||||
template <typename... Args>
|
||||
const Scalar& operator()(Args... args) const
|
||||
{
|
||||
static_assert(sizeof...(args) == Dim, "Wrong number of arguments");
|
||||
return data[ TensorInd<1, Dim, Args...>::result(sizes, args...) ];
|
||||
}
|
||||
|
||||
/**
|
||||
* A reference accessor to the data
|
||||
*/
|
||||
template <typename... Args>
|
||||
Scalar& operator()(Args... args)
|
||||
{
|
||||
static_assert(sizeof...(args) == Dim, "Wrong number of arguments");
|
||||
return data[ TensorInd<1, Dim, Args...>::result(sizes, args...) ];
|
||||
}
|
||||
|
||||
const Scalar& operator[](int i) const
|
||||
{
|
||||
return data[i];
|
||||
}
|
||||
|
||||
Scalar& operator[](int i)
|
||||
{
|
||||
return data[i];
|
||||
}
|
||||
|
||||
void zero()
|
||||
{
|
||||
for (int i = 0; i < capacity; ++i)
|
||||
{
|
||||
data[i] = Scalar();
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the size of the i-th dimension #UNSAFE#
|
||||
*/
|
||||
const int size(int i) const
|
||||
{
|
||||
return sizes[i];
|
||||
}
|
||||
|
||||
const int Height() const
|
||||
{
|
||||
static_assert(Dim == 2, "Height() should only be used for second order tensors");
|
||||
return sizes[0];
|
||||
}
|
||||
|
||||
const int Width() const
|
||||
{
|
||||
static_assert(Dim == 2, "Width() should only be used for second order tensors");
|
||||
return sizes[1];
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the length of the Tensor (number of values, may be different from capacity)
|
||||
*/
|
||||
const int length() const
|
||||
{
|
||||
int res = 1;
|
||||
for (int i = 0; i < Dim; ++i)
|
||||
{
|
||||
res *= sizes[i];
|
||||
}
|
||||
return res;
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the dimension of the tensor.
|
||||
*/
|
||||
const int dimension() const
|
||||
{
|
||||
return Dim;
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the Scalar array data (Really unsafe and ugly method)
|
||||
* Mostly exists to remap Tensors, so could be avoided by using more constructors...
|
||||
*/
|
||||
Scalar* getData()
|
||||
{
|
||||
return data;
|
||||
}
|
||||
|
||||
const Scalar* getData() const
|
||||
{
|
||||
return data;
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns a sub-tensor contained in the last dimension at @index in the Tensor @T.
|
||||
*/
|
||||
void slice(Tensor<Dim+1, Scalar>& T, const int index) {
|
||||
if (own_data)
|
||||
{
|
||||
mfem_error("I didn't expect you to do that");
|
||||
}
|
||||
int offset = 1;
|
||||
for (int i = 0; i < Dim; ++i)
|
||||
{
|
||||
const int size = T.size(i);
|
||||
offset *= size;
|
||||
this->sizes[i] = size;
|
||||
}
|
||||
this->capacity = offset;
|
||||
const int ind = offset * index;
|
||||
this->data = T.getData() + ind;
|
||||
this->own_data = false;
|
||||
}
|
||||
|
||||
/**
|
||||
* Basic printing method.
|
||||
*/
|
||||
friend std::ostream& operator<<(std::ostream& os, const Tensor& T)
|
||||
{
|
||||
int nb_elts = 1;
|
||||
for (int i = 0; i < T.dimension(); ++i)
|
||||
{
|
||||
nb_elts *= T.size(i);
|
||||
}
|
||||
for (int i = 0; i < nb_elts; ++i)
|
||||
{
|
||||
os << T.data[i] << " ";
|
||||
if ((i + 1) % T.sizes[0] == 0)
|
||||
{
|
||||
os << "\n";
|
||||
}
|
||||
}
|
||||
os << "\n";
|
||||
return os;
|
||||
}
|
||||
};
|
||||
|
||||
template <typename Scalar>
|
||||
class Tensor<0,Scalar>{
|
||||
private:
|
||||
Scalar* data;
|
||||
bool own_data;
|
||||
public:
|
||||
Tensor(): data(new Scalar), own_data(true) {}
|
||||
|
||||
Tensor& operator=(Scalar& val) {
|
||||
*data = val;
|
||||
return *this;
|
||||
}
|
||||
|
||||
Tensor& operator=(Scalar val) {
|
||||
*data = val;
|
||||
return *this;
|
||||
}
|
||||
|
||||
void slice(Tensor<1,Scalar>& T, const int index) {
|
||||
data = &T(index);
|
||||
}
|
||||
|
||||
friend std::ostream& operator<<(std::ostream& os, const Tensor& T)
|
||||
{
|
||||
os << *T.data;
|
||||
return os;
|
||||
}
|
||||
};
|
||||
|
||||
template <typename Scalar>
|
||||
inline void adjugate(const Tensor<2, Scalar>& A, Tensor<2, Scalar>& Adj)
|
||||
{
|
||||
const int dim = A.Height();
|
||||
switch (dim) {
|
||||
case 1:
|
||||
Adj(0, 0) = A(0, 0);
|
||||
break;
|
||||
case 2:
|
||||
Adj(0, 0) = A(1, 1); Adj(0, 1) = -A(0, 1);
|
||||
Adj(1, 0) = -A(1, 0); Adj(1, 1) = A(0, 0);
|
||||
break;
|
||||
case 3:
|
||||
Adj(0, 0) = A(1, 1) * A(2, 2) - A(1, 2) * A(2, 1);
|
||||
Adj(0, 1) = -A(0, 1) * A(2, 2) + A(0, 2) * A(2, 1);
|
||||
Adj(0, 2) = A(0, 1) * A(1, 2) - A(0, 2) * A(1, 1);
|
||||
//
|
||||
Adj(1, 0) = -A(1, 0) * A(2, 2) + A(1, 2) * A(2, 0);
|
||||
Adj(1, 1) = A(0, 0) * A(2, 2) - A(0, 2) * A(2, 0);
|
||||
Adj(1, 2) = -A(0, 0) * A(1, 2) + A(0, 2) * A(1, 0);
|
||||
//
|
||||
Adj(2, 0) = A(1, 0) * A(2, 1) - A(1, 1) * A(2, 0);
|
||||
Adj(2, 1) = -A(0, 0) * A(2, 1) + A(0, 1) * A(2, 0);
|
||||
Adj(2, 2) = A(0, 0) * A(1, 1) - A(0, 1) * A(1, 0);
|
||||
break;
|
||||
default:
|
||||
mfem_error("adjugate not defined for this size");
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline Scalar det(const Tensor<2, Scalar>& A)
|
||||
{
|
||||
MFEM_ASSERT(A.Height() == A.Width(), "You're attempting to compute the determinant of a non square matrix.");
|
||||
const int dim = A.Height();
|
||||
switch (dim) {
|
||||
case 1:
|
||||
return A(0, 0);
|
||||
case 2:
|
||||
return A(0, 0) * A(1, 1) - A(0, 1) * A(1, 0);
|
||||
case 3:
|
||||
return A(0, 0) * (A(1, 1) * A(2, 2) - A(1, 2) * A(2, 1))
|
||||
- A(1, 0) * (A(0, 1) * A(2, 2) - A(0, 2) * A(2, 1))
|
||||
+ A(2, 0) * (A(0, 1) * A(1, 2) - A(0, 2) * A(1, 1));
|
||||
default:
|
||||
mfem_error("determinant not defined for this size");
|
||||
break;
|
||||
}
|
||||
return Scalar();
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline Scalar norm2sq(const Tensor<1, Scalar>& t)
|
||||
{
|
||||
Scalar res = 0.0;
|
||||
for (int i = 0; i < t.size(0); ++i)
|
||||
{
|
||||
res += t(i) * t(i);
|
||||
}
|
||||
return res;
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline Scalar dot(const Tensor<1, Scalar>& t1, const Tensor<1, Scalar>& t2)
|
||||
{
|
||||
Scalar res = 0.0;
|
||||
MFEM_ASSERT(t1.size(0) == t2.size(0), "Tensor<1> t1 and t2 are of different size");
|
||||
for (int i = 0; i < t1.size(0); ++i)
|
||||
{
|
||||
res += t1(i) * t2(i);
|
||||
}
|
||||
return res;
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void calcOrtho(const Tensor<2, Scalar>& J, const int& face_id, Tensor<1>& n)
|
||||
{
|
||||
const int dim = n.length();
|
||||
switch (dim)
|
||||
{
|
||||
case 1:
|
||||
n(0) = face_id == 0 ? -J(0, 0) : J(0, 0);
|
||||
break;
|
||||
case 2:
|
||||
//FIXME: looks strange we access 2D Jacobians in a different way than 3D
|
||||
switch (face_id)
|
||||
{
|
||||
case 0://SOUTH ( 0,-1)
|
||||
// n(0) = -J(0,1); n(1) = -J(1,1);
|
||||
n(0) = -J(1, 0); n(1) = -J(1, 1);
|
||||
break;
|
||||
case 1://EAST ( 1, 0)
|
||||
// n(0) = J(0,0); n(1) = J(1,0);
|
||||
n(0) = J(0, 0); n(1) = J(0, 1);
|
||||
break;
|
||||
case 2://NORTH ( 0, 1)
|
||||
// n(0) = J(0,1); n(1) = J(1,1);
|
||||
n(0) = J(1, 0); n(1) = J(1, 1);
|
||||
break;
|
||||
case 3://WEST (-1, 0)
|
||||
// n(0) = -J(0,0); n(1) = -J(1,0);
|
||||
n(0) = -J(0, 0); n(1) = -J(0, 1);
|
||||
break;
|
||||
}
|
||||
break;
|
||||
case 3:
|
||||
switch (face_id)
|
||||
{
|
||||
case 0://BOTTOM ( 0, 0,-1)
|
||||
n(0) = -J(0, 2); n(1) = -J(1, 2); n(2) = -J(2, 2);
|
||||
break;
|
||||
case 1://SOUTH ( 0,-1, 0)
|
||||
n(0) = -J(0, 1); n(1) = -J(1, 1); n(2) = -J(2, 1);
|
||||
break;
|
||||
case 2://EAST ( 1, 0, 0)
|
||||
n(0) = J(0, 0); n(1) = J(1, 0); n(2) = J(2, 0);
|
||||
break;
|
||||
case 3://NORTH ( 0, 1, 0)
|
||||
n(0) = J(0, 1); n(1) = J(1, 1); n(2) = J(2, 1);
|
||||
break;
|
||||
case 4://WEST (-1, 0, 0)
|
||||
n(0) = -J(0, 0); n(1) = -J(1, 0); n(2) = -J(2, 0);
|
||||
break;
|
||||
case 5://TOP ( 0, 0, 1)
|
||||
n(0) = J(0, 2); n(1) = J(1, 2); n(2) = J(2, 2);
|
||||
break;
|
||||
}
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* A type trait to obtain the the Scalar type underloying a type.
|
||||
*/
|
||||
template <typename T>
|
||||
struct value_type;
|
||||
|
||||
template <int N, typename Scalar>
|
||||
struct value_type<Tensor<N, Scalar>>
|
||||
{
|
||||
typedef Scalar type;
|
||||
};
|
||||
|
||||
template <typename T>
|
||||
using value_type_t = typename value_type<T>::type;
|
||||
|
||||
///////////////////////////
|
||||
// "Volume" contractions //
|
||||
///////////////////////////
|
||||
|
||||
|
||||
// Would defining those contractions for abstract templated types be better?
|
||||
///////
|
||||
// 1d
|
||||
template <typename Scalar>
|
||||
inline void contract(const Tensor<2, Scalar>& B, const Tensor<1, Scalar>& U, Tensor<1, Scalar>& V)
|
||||
{
|
||||
MFEM_ASSERT(B.size(0) == U.size(0), "Size mismatch for contraction.");
|
||||
for (int j = 0; j < B.size(1); ++j)
|
||||
{
|
||||
V(j) = Scalar();
|
||||
for (int i = 0; i < B.size(0); ++i)
|
||||
{
|
||||
V(j) += B(i, j) * U(i);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void contractT(const Tensor<2, Scalar>& B, const Tensor<1, Scalar>& U, Tensor<1, Scalar>& V)
|
||||
{
|
||||
MFEM_ASSERT(B.size(1) == U.size(0), "Size mismatch for contraction.");
|
||||
for (int j = 0; j < B.size(0); ++j)
|
||||
{
|
||||
V(j) = Scalar();
|
||||
for (int i = 0; i < B.size(1); ++i)
|
||||
{
|
||||
V(j) += B(j, i) * U(i);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
///////
|
||||
// 2d
|
||||
template <typename Scalar>
|
||||
inline void contract(const Tensor<2, Scalar>& B, const Tensor<2, Scalar>& U, Tensor<2, Scalar>& V)
|
||||
{
|
||||
MFEM_ASSERT(B.size(0) == U.size(0), "Size mismatch for contraction.");
|
||||
for (int j1 = 0; j1 < B.size(1); ++j1)
|
||||
{
|
||||
for (int i2 = 0; i2 < U.size(1); ++i2)
|
||||
{
|
||||
V(i2, j1) = Scalar();
|
||||
for (int i1 = 0; i1 < B.size(0); ++i1)
|
||||
{
|
||||
V(i2, j1) += B(i1, j1) * U(i1, i2);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void contractT(const Tensor<2, Scalar>& B, const Tensor<2, Scalar>& U, Tensor<2, Scalar>& V)
|
||||
{
|
||||
MFEM_ASSERT(B.size(1) == U.size(0), "Size mismatch for contraction.");
|
||||
for (int j1 = 0; j1 < B.size(0); ++j1)
|
||||
{
|
||||
for (int i2 = 0; i2 < U.size(1); ++i2)
|
||||
{
|
||||
V(i2, j1) = Scalar();
|
||||
for (int i1 = 0; i1 < B.size(1); ++i1)
|
||||
{
|
||||
V(i2, j1) += B(j1, i1) * U(i1, i2);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
///////
|
||||
// 3d
|
||||
template <typename Scalar>
|
||||
inline void contract(const Tensor<2, Scalar>& B, const Tensor<3, Scalar>& U, Tensor<3, Scalar>& V)
|
||||
{
|
||||
MFEM_ASSERT(B.size(0) == U.size(0), "Size mismatch for contraction.");
|
||||
for (int j1 = 0; j1 < B.size(1); ++j1)
|
||||
{
|
||||
for (int i3 = 0; i3 < U.size(2); ++i3)
|
||||
{
|
||||
for (int i2 = 0; i2 < U.size(1); ++i2)
|
||||
{
|
||||
V(i2, i3, j1) = Scalar();
|
||||
for (int i1 = 0; i1 < B.size(0); ++i1)
|
||||
{
|
||||
V(i2, i3, j1) += B(i1, j1) * U(i1, i2, i3);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void contractT(const Tensor<2, Scalar>& B, const Tensor<3, Scalar>& U, Tensor<3, Scalar>& V)
|
||||
{
|
||||
MFEM_ASSERT(B.size(1) == U.size(0), "Size mismatch for contraction.");
|
||||
for (int j1 = 0; j1 < B.size(0); ++j1)
|
||||
{
|
||||
for (int i3 = 0; i3 < U.size(2); ++i3)
|
||||
{
|
||||
for (int i2 = 0; i2 < U.size(1); ++i2)
|
||||
{
|
||||
V(i2, i3, j1) = Scalar();
|
||||
for (int i1 = 0; i1 < B.size(1); ++i1)
|
||||
{
|
||||
V(i2, i3, j1) += B(j1, i1) * U(i1, i2, i3);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/////////////////////////
|
||||
// "Face" contractions //
|
||||
/////////////////////////
|
||||
|
||||
///////
|
||||
// 1d
|
||||
template <typename Scalar>
|
||||
inline void contractX(const Tensor<1, Scalar>& B, const Tensor<1, Scalar>& U, Scalar& V)
|
||||
{
|
||||
MFEM_ASSERT(B.size(0) == U.size(0), "Size mismatch for contraction.");
|
||||
V = Scalar();
|
||||
for (int i = 0; i < B.size(0); ++i)
|
||||
{
|
||||
V += B(i) * U(i);
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void contractTX(const Tensor<1, Scalar>& B, const Scalar& U, Tensor<1, Scalar>& V)
|
||||
{
|
||||
for (int i = 0; i < B.size(0); ++i)
|
||||
{
|
||||
V(i) = B(i) * U;
|
||||
}
|
||||
}
|
||||
|
||||
///////
|
||||
// 2d
|
||||
template <typename Scalar>
|
||||
inline void contractX(const Tensor<2, Scalar>& B, const Tensor<2, Scalar>& U, Tensor<1, Scalar>& V)
|
||||
{
|
||||
MFEM_ASSERT(B.size(0) == U.size(0), "Size mismatch for contraction.");
|
||||
for (int i2 = 0; i2 < U.size(1); ++i2)
|
||||
{
|
||||
V(i2) = Scalar();
|
||||
for (int i1 = 0; i1 < B.size(0); ++i1)
|
||||
{
|
||||
V(i2) += B(i1, 0) * U(i1, i2);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void contractTX(const Tensor<2, Scalar>& B, const Tensor<1, Scalar>& U, Tensor<2, Scalar>& V)
|
||||
{
|
||||
for (int i2 = 0; i2 < U.size(0); ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < B.size(0); ++i1)
|
||||
{
|
||||
V(i1, i2) += B(i1, 0) * U(i2);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void contractY(const Tensor<2, Scalar>& B, const Tensor<2, Scalar>& U, Tensor<1, Scalar>& V)
|
||||
{
|
||||
MFEM_ASSERT(B.size(0) == U.size(1), "Size mismatch for contraction.");
|
||||
|
||||
for (int i1 = 0; i1 < B.size(0); ++i1)
|
||||
{
|
||||
V(i1) = Scalar();
|
||||
for (int i2 = 0; i2 < U.size(1); ++i2)
|
||||
{
|
||||
// V(i1) += B(i2,0) * U(i1,i2);
|
||||
V(i1) += B[i2] * U(i1, i2);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void contractTY(const Tensor<2, Scalar>& B, const Tensor<1, Scalar>& U, Tensor<2, Scalar>& V)
|
||||
{
|
||||
for (int i2 = 0; i2 < B.size(0); ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < U.size(0); ++i1)
|
||||
{
|
||||
// V(i1,i2) += B(i2,0) * U(i1);
|
||||
V(i1, i2) += B[i2] * U(i1);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
///////
|
||||
// 3d
|
||||
template <typename Scalar>
|
||||
inline void contractX(const Tensor<1, Scalar>& B, const Tensor<3, Scalar>& U, Tensor<2, Scalar>& V)
|
||||
{
|
||||
MFEM_ASSERT(B.size(0) == U.size(0), "Size mismatch for contraction.");
|
||||
for (int i3 = 0; i3 < U.size(2); ++i3)
|
||||
{
|
||||
for (int i2 = 0; i2 < U.size(1); ++i2)
|
||||
{
|
||||
V(i2, i3) = Scalar();
|
||||
for (int i1 = 0; i1 < B.size(0); ++i1)
|
||||
{
|
||||
V(i2, i3) += B(i1) * U(i1, i2, i3);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void contractTX(const Tensor<1, Scalar>& B, const Tensor<2, Scalar>& U, Tensor<3, Scalar>& V)
|
||||
{
|
||||
for (int i3 = 0; i3 < U.size(1); ++i3)
|
||||
{
|
||||
for (int i2 = 0; i2 < U.size(0); ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < B.size(0); ++i1)
|
||||
{
|
||||
V(i1, i2, i3) = B(i1) * U(i2, i3);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void contractY(const Tensor<1, Scalar>& B, const Tensor<3, Scalar>& U, Tensor<2, Scalar>& V)
|
||||
{
|
||||
MFEM_ASSERT(B.size(0) == U.size(1), "Size mismatch for contraction.");
|
||||
V.zero();
|
||||
for (int i3 = 0; i3 < U.size(2); ++i3)
|
||||
{
|
||||
for (int i2 = 0; i2 < U.size(1); ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < B.size(0); ++i1)
|
||||
{
|
||||
V(i1, i3) += B(i2) * U(i1, i2, i3);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void contractTY(const Tensor<1, Scalar>& B, const Tensor<2, Scalar>& U, Tensor<3, Scalar>& V)
|
||||
{
|
||||
for (int i3 = 0; i3 < U.size(1); ++i3)
|
||||
{
|
||||
for (int i2 = 0; i2 < B.size(0); ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < U.size(0); ++i1)
|
||||
{
|
||||
V(i1, i2, i3) = B(i2) * U(i1, i3);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void contractZ(const Tensor<1, Scalar>& B, const Tensor<3, Scalar>& U, Tensor<2, Scalar>& V)
|
||||
{
|
||||
MFEM_ASSERT(B.size(0) == U.size(2), "Size mismatch for contraction.");
|
||||
V.zero();
|
||||
for (int i3 = 0; i3 < U.size(2); ++i3)
|
||||
{
|
||||
for (int i2 = 0; i2 < U.size(1); ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < B.size(0); ++i1)
|
||||
{
|
||||
V(i1, i2) += B(i3) * U(i1, i2, i3);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void contractTZ(const Tensor<1, Scalar>& B, const Tensor<2, Scalar>& U, Tensor<3, Scalar>& V)
|
||||
{
|
||||
for (int i3 = 0; i3 < B.size(0); ++i3)
|
||||
{
|
||||
for (int i2 = 0; i2 < U.size(1); ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < U.size(0); ++i1)
|
||||
{
|
||||
V(i1, i2, i3) = B(i3) * U(i1, i2);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
///////////////////////////////////////
|
||||
// Coefficient-wise multiplication //
|
||||
///////////////////////////////////////
|
||||
|
||||
template <int N, typename Scalar>
|
||||
inline void cWiseMult(const Tensor<N, Scalar>& D, const Tensor<N, Scalar>& U, Tensor<N, Scalar>& V)
|
||||
{
|
||||
MFEM_ASSERT(D.length() == U.length() && U.length() == V.length(), "The Tensors do not contain the same number of elements.")
|
||||
for (int i = 0; i < U.length(); ++i)
|
||||
{
|
||||
V[i] = D[i] * U[i];
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void cWiseMult(const Tensor<3, Scalar>& D,
|
||||
const Tensor<2, Scalar>& BGT, const Tensor<2, Scalar>& GBT,
|
||||
Tensor<2, Scalar>& DGT)
|
||||
{
|
||||
for (int i2 = 0; i2 < D.size(2); ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < D.size(1); ++i1)
|
||||
{
|
||||
DGT(i1, i2) = D(0, i1, i2) * BGT(i1, i2)
|
||||
+ D(1, i1, i2) * GBT(i1, i2);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void cWiseMult(const Tensor<4, Scalar>& D,
|
||||
const Tensor<2, Scalar>& BGT, const Tensor<2, Scalar>& GBT,
|
||||
Tensor<2, Scalar>& D0GT, Tensor<2, Scalar>& D1GT)
|
||||
{
|
||||
for (int i2 = 0; i2 < D.size(3); ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < D.size(2); ++i1)
|
||||
{
|
||||
D0GT(i1, i2) = D(0, 0, i1, i2) * BGT(i1, i2)
|
||||
+ D(0, 1, i1, i2) * GBT(i1, i2);
|
||||
|
||||
D1GT(i1, i2) = D(1, 0, i1, i2) * BGT(i1, i2)
|
||||
+ D(1, 1, i1, i2) * GBT(i1, i2);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void cWiseMult(const Tensor<4, Scalar>& D,
|
||||
const Tensor<3, Scalar>& BBGT, const Tensor<3, Scalar>& BGBT, const Tensor<3, Scalar>& GBBT,
|
||||
Tensor<3, Scalar>& DGT)
|
||||
{
|
||||
for (int i3 = 0; i3 < D.size(3); ++i3)
|
||||
{
|
||||
for (int i2 = 0; i2 < D.size(2); ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < D.size(1); ++i1)
|
||||
{
|
||||
DGT(i1, i2, i3) = D(0, i1, i2, i3) * BBGT(i1, i2, i3)
|
||||
+ D(1, i1, i2, i3) * BGBT(i1, i2, i3)
|
||||
+ D(2, i1, i2, i3) * GBBT(i1, i2, i3);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <typename Scalar>
|
||||
inline void cWiseMult(const Tensor<5, Scalar>& D,
|
||||
const Tensor<3, Scalar>& BBGT, const Tensor<3, Scalar>& BGBT, const Tensor<3, Scalar>& GBBT,
|
||||
Tensor<3, Scalar>& D0GT, Tensor<3, Scalar>& D1GT, Tensor<3, Scalar>& D2GT)
|
||||
{
|
||||
for (int i3 = 0; i3 < D.size(4); ++i3)
|
||||
{
|
||||
for (int i2 = 0; i2 < D.size(3); ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < D.size(2); ++i1)
|
||||
{
|
||||
const Scalar v1 = BBGT(i1, i2, i3), v2 = BGBT(i1, i2, i3), v3 = GBBT(i1, i2, i3);
|
||||
D0GT(i1, i2, i3) = D(0, 0, i1, i2, i3) * v1
|
||||
+ D(0, 1, i1, i2, i3) * v2
|
||||
+ D(0, 2, i1, i2, i3) * v3;
|
||||
D1GT(i1, i2, i3) = D(1, 0, i1, i2, i3) * v1
|
||||
+ D(1, 1, i1, i2, i3) * v2
|
||||
+ D(1, 2, i1, i2, i3) * v3;
|
||||
D2GT(i1, i2, i3) = D(2, 0, i1, i2, i3) * v1
|
||||
+ D(2, 1, i1, i2, i3) * v2
|
||||
+ D(2, 2, i1, i2, i3) * v3;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
typedef Tensor<2, int> IntMatrix;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
#endif //MFEM_DUMMYALGEBRA
|
||||
@@ -0,0 +1,289 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
// This file contains operator-based bilinear form integrators used
|
||||
// with BilinearFormOperator.
|
||||
|
||||
#ifndef MFEM_TENSORFUNC_CPP
|
||||
#define MFEM_TENSORFUNC_CPP
|
||||
|
||||
#include "tensor.hpp"
|
||||
#include "../../fem/fespace.hpp"
|
||||
#include "tensorialfunctions.hpp"
|
||||
#include "../../fem/gridfunc.hpp"
|
||||
// #include "fem.hpp"
|
||||
// #include "dgpabilininteg.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
void ScatterDofs(const mfem::FiniteElementSpace* mfes, const Table& eldof, const mfem::Array<int>& dof_map,
|
||||
const GridFunction* nodes, const int dofs, const int dim, const int e,
|
||||
Tensor<2>& LexPointMat)
|
||||
{
|
||||
if (dof_map.Size()==0)
|
||||
{
|
||||
if(mfes->GetOrdering()==Ordering::byVDIM)
|
||||
{
|
||||
for (int i = 0; i < dofs; ++i)
|
||||
{
|
||||
for (int j = 0; j < dim; ++j)
|
||||
{
|
||||
LexPointMat(j,i) = (*nodes)( ( e*dofs + i )*dim + j );
|
||||
}
|
||||
}
|
||||
}else{
|
||||
for (int i = 0; i < dofs; ++i)
|
||||
{
|
||||
for (int j = 0; j < dim; ++j)
|
||||
{
|
||||
LexPointMat(j,i) = (*nodes)( ( e*dofs + i ) + j*mfes->GetNDofs() );
|
||||
}
|
||||
}
|
||||
}
|
||||
}else{
|
||||
if(mfes->GetOrdering()==Ordering::byVDIM)
|
||||
{
|
||||
for (int i = 0; i < dofs; ++i)
|
||||
{
|
||||
const int pivot = dof_map[i];
|
||||
for (int j = 0; j < dim; ++j)
|
||||
{
|
||||
LexPointMat(j,i) = (*nodes)(eldof.GetJ()[ e*dofs + pivot ]*dim + j);
|
||||
}
|
||||
}
|
||||
}else{
|
||||
for (int i = 0; i < dofs; ++i)
|
||||
{
|
||||
const int pivot = dof_map[i];
|
||||
for (int j = 0; j < dim; ++j)
|
||||
{
|
||||
LexPointMat(j,i) = (*nodes)(eldof.GetJ()[ e*dofs + pivot ] + j*mfes->GetNDofs());
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
static void EvalJacobians1D(const mfem::FiniteElementSpace* fes, const int order, Tensor<1>& J)
|
||||
{
|
||||
const int dim = 1;
|
||||
|
||||
const Mesh* mesh = fes->GetMesh();
|
||||
const mfem::FiniteElementSpace* mfes = mesh->GetNodalFESpace();
|
||||
const Table& eldof = mfes->GetElementToDofTable();
|
||||
const FiniteElement* fe = mfes->GetFE(0);
|
||||
const TensorBasisElement* tfe = dynamic_cast<const TensorBasisElement*>(fe);
|
||||
const mfem::Array<int>& dof_map = tfe->GetDofMap();
|
||||
const GridFunction* nodes = mesh->GetNodes();
|
||||
Tensor<2> shape1d(GetNDofs1d(mfes),GetNQuads1d(order)), dshape1d(GetNDofs1d(mfes),GetNQuads1d(order));
|
||||
ComputeBasis1d( fe, order, shape1d, dshape1d );
|
||||
|
||||
const int NE = fes->GetNE();
|
||||
|
||||
const int quads1d = shape1d.Width();
|
||||
const int dofs1d = shape1d.Height();
|
||||
const int dofs = dofs1d;
|
||||
|
||||
Tensor<2> Jac(J.getData(),quads1d,NE);
|
||||
Jac.zero();
|
||||
Tensor<2> LexPointMat(dim,dofs);
|
||||
|
||||
Tensor<1> T0(LexPointMat.getData(),dofs1d);
|
||||
for (int e = 0; e < NE; ++e)
|
||||
{
|
||||
ScatterDofs(mfes, eldof, dof_map, nodes, dofs, dim, e, LexPointMat);
|
||||
// Computing the Jacobian with the tensor product structure
|
||||
for (int j1 = 0; j1 < quads1d; ++j1)
|
||||
{
|
||||
for (int i1 = 0; i1 < dofs1d; ++i1)
|
||||
{
|
||||
for (int d = 0; d < dim; ++d)
|
||||
{
|
||||
Jac(j1,e) += T0(i1) * dshape1d(i1,j1);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
static void EvalJacobians2D(const mfem::FiniteElementSpace* fes, const int order, Tensor<1>& J)
|
||||
{
|
||||
const int dim = 2;
|
||||
|
||||
const Mesh* mesh = fes->GetMesh();
|
||||
const mfem::FiniteElementSpace* mfes = mesh->GetNodalFESpace();
|
||||
const Table& eldof = mfes->GetElementToDofTable();
|
||||
const FiniteElement* fe = mfes->GetFE(0);
|
||||
const TensorBasisElement* tfe = dynamic_cast<const TensorBasisElement*>(fe);
|
||||
const mfem::Array<int>& dof_map = tfe->GetDofMap();
|
||||
const GridFunction* nodes = mesh->GetNodes();
|
||||
Tensor<2> shape1d(GetNDofs1d(mfes),GetNQuads1d(order)), dshape1d(GetNDofs1d(mfes),GetNQuads1d(order));
|
||||
ComputeBasis1d( fe, order, shape1d, dshape1d );
|
||||
|
||||
const int NE = mfes->GetNE();
|
||||
|
||||
const int quads1d = shape1d.Width();
|
||||
const int dofs1d = shape1d.Height();
|
||||
const int dofs = dofs1d * dofs1d;
|
||||
|
||||
|
||||
Tensor<5> Jac(J.getData(),dim,dim,quads1d,quads1d,NE);
|
||||
Jac.zero();
|
||||
Tensor<2> LexPointMat(dim,dofs);
|
||||
|
||||
Tensor<3> T0(LexPointMat.getData(),dim,dofs1d,dofs1d);
|
||||
Tensor<2> T1b(dim,quads1d), T1d(dim,quads1d);
|
||||
for (int e = 0; e < NE; ++e)
|
||||
{
|
||||
ScatterDofs(mfes, eldof, dof_map, nodes, dofs, dim, e, LexPointMat);
|
||||
// Computing the Jacobian with the tensor product structure
|
||||
for (int i2 = 0; i2 < dofs1d; ++i2)
|
||||
{
|
||||
T1b.zero();
|
||||
T1d.zero();
|
||||
for (int j1 = 0; j1 < quads1d; ++j1)
|
||||
{
|
||||
for (int i1 = 0; i1 < dofs1d; ++i1)
|
||||
{
|
||||
for (int d = 0; d < dim; ++d)
|
||||
{
|
||||
T1b(d,j1) += T0(d,i1,i2) * shape1d(i1,j1);
|
||||
T1d(d,j1) += T0(d,i1,i2) * dshape1d(i1,j1);
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int j2 = 0; j2 < quads1d; ++j2)
|
||||
{
|
||||
for (int j1 = 0; j1 < quads1d; ++j1)
|
||||
{
|
||||
for (int d = 0; d < dim; ++d)
|
||||
{
|
||||
Jac(d,0,j1,j2,e) += T1d(d,j1) * shape1d(i2,j2);
|
||||
Jac(d,1,j1,j2,e) += T1b(d,j1) * dshape1d(i2,j2);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
static void EvalJacobians3D(const mfem::FiniteElementSpace* fes, const int order, Tensor<1>& J)
|
||||
{
|
||||
const int dim = 3;
|
||||
|
||||
const Mesh* mesh = fes->GetMesh();
|
||||
const mfem::FiniteElementSpace* mfes = mesh->GetNodalFESpace();
|
||||
const Table& eldof = mfes->GetElementToDofTable();
|
||||
const FiniteElement* fe = mfes->GetFE(0);
|
||||
const TensorBasisElement* tfe = dynamic_cast<const TensorBasisElement*>(fe);
|
||||
const mfem::Array<int>& dof_map = tfe->GetDofMap();
|
||||
const GridFunction* nodes = mesh->GetNodes();
|
||||
Tensor<2> shape1d(GetNDofs1d(mfes),GetNQuads1d(order)), dshape1d(GetNDofs1d(mfes),GetNQuads1d(order));
|
||||
ComputeBasis1d( fe, order, shape1d, dshape1d );
|
||||
|
||||
const int NE = fes->GetNE();
|
||||
|
||||
const int quads1d = shape1d.Width();
|
||||
const int dofs1d = shape1d.Height();
|
||||
const int dofs = dofs1d * dofs1d * dofs1d;
|
||||
|
||||
Tensor<6> Jac(J.getData(),dim,dim,quads1d,quads1d,quads1d,NE);
|
||||
Jac.zero();
|
||||
Tensor<2> LexPointMat(dim,dofs);
|
||||
|
||||
Tensor<4> T0(LexPointMat.getData(),dim,dofs1d,dofs1d,dofs1d);
|
||||
Tensor<2> T1b(dim,quads1d), T1d(dim,quads1d);
|
||||
Tensor<3> T2bb(dim,quads1d,quads1d), T2db(dim,quads1d,quads1d), T2bd(dim,quads1d,quads1d);
|
||||
for (int e = 0; e < NE; ++e)
|
||||
{
|
||||
// Modifies T0 in the same time...
|
||||
ScatterDofs(mfes, eldof, dof_map, nodes, dofs, dim, e, LexPointMat);
|
||||
// Computing the Jacobian with the tensor product structure
|
||||
for (int i3 = 0; i3 < dofs1d; ++i3)
|
||||
{
|
||||
T2bb.zero();
|
||||
T2db.zero();
|
||||
T2bd.zero();
|
||||
for (int i2 = 0; i2 < dofs1d; ++i2)
|
||||
{
|
||||
T1b.zero();
|
||||
T1d.zero();
|
||||
for (int j1 = 0; j1 < quads1d; ++j1)
|
||||
{
|
||||
for (int i1 = 0; i1 < dofs1d; ++i1)
|
||||
{
|
||||
for (int d = 0; d < dim; ++d)
|
||||
{
|
||||
T1b(d,j1) += T0(d,i1,i2,i3) * shape1d(i1,j1);
|
||||
T1d(d,j1) += T0(d,i1,i2,i3) * dshape1d(i1,j1);
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int j2 = 0; j2 < quads1d; ++j2)
|
||||
{
|
||||
for (int j1 = 0; j1 < quads1d; ++j1)
|
||||
{
|
||||
for (int d = 0; d < dim; ++d)
|
||||
{
|
||||
T2bb(d,j1,j2) += T1b(d,j1) * shape1d(i2,j2);
|
||||
T2bd(d,j1,j2) += T1b(d,j1) * dshape1d(i2,j2);
|
||||
T2db(d,j1,j2) += T1d(d,j1) * shape1d(i2,j2);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int j3 = 0; j3 < quads1d; ++j3)
|
||||
{
|
||||
for (int j2 = 0; j2 < quads1d; ++j2)
|
||||
{
|
||||
for (int j1 = 0; j1 < quads1d; ++j1)
|
||||
{
|
||||
for (int d = 0; d < dim; ++d)
|
||||
{
|
||||
Jac(d,0,j1,j2,j3,e) += T2db(d,j1,j2) * shape1d(i3,j3);
|
||||
Jac(d,1,j1,j2,j3,e) += T2bd(d,j1,j2) * shape1d(i3,j3);
|
||||
Jac(d,2,j1,j2,j3,e) += T2bb(d,j1,j2) * dshape1d(i3,j3);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void EvalJacobians( const int dim, const mfem::FiniteElementSpace* fes, const int order,
|
||||
Tensor<1>& J )
|
||||
{
|
||||
switch(dim)
|
||||
{
|
||||
case 1:
|
||||
EvalJacobians1D( fes, order, J );
|
||||
break;
|
||||
case 2:
|
||||
EvalJacobians2D( fes, order, J );
|
||||
break;
|
||||
case 3:
|
||||
EvalJacobians3D( fes, order, J );
|
||||
break;
|
||||
default:
|
||||
mfem_error("This orientation does not exist in 3D");
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,801 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
// This file contains operator-based bilinear form integrators used
|
||||
// with BilinearFormOperator.
|
||||
|
||||
#ifndef MFEM_TENSORFUNC
|
||||
#define MFEM_TENSORFUNC
|
||||
|
||||
#include "tensor.hpp"
|
||||
// #include "fem.hpp"
|
||||
#include "dgpabilininteg.hpp"
|
||||
#include "../../fem/fespace.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
/// Returns number of degrees of freedom in each direction.
|
||||
inline const int GetNDofs1d(const mfem::FiniteElementSpace& fes){ return fes.GetFE(0)->GetOrder() + 1; }
|
||||
|
||||
inline const int GetNDofs1d(const mfem::FiniteElementSpace* fes){ return GetNDofs1d(*fes); }
|
||||
|
||||
/// Returns number of quadrature points in each direction.
|
||||
inline const int GetNQuads1d(const int order)
|
||||
{
|
||||
const IntegrationRule &ir1d = IntRules.Get(Geometry::SEGMENT, order);
|
||||
return ir1d.GetNPoints();
|
||||
}
|
||||
|
||||
/**
|
||||
* Gives the evaluation of the 1d basis functions and their derivative at one point @param x
|
||||
*/
|
||||
template <typename Tensor>
|
||||
void ComputeBasis0d(const FiniteElement *fe, double x,
|
||||
Tensor& shape0d, Tensor& dshape0d)
|
||||
{
|
||||
const TensorBasisElement* tfe(dynamic_cast<const TensorBasisElement*>(fe));
|
||||
const Poly_1D::Basis &basis0d = tfe->GetBasis1D();
|
||||
|
||||
const int quads0d = 1;
|
||||
const int dofs = fe->GetOrder() + 1;
|
||||
|
||||
mfem::Vector u(dofs);
|
||||
mfem::Vector d(dofs);
|
||||
basis0d.Eval(x, u, d);
|
||||
for (int i = 0; i < dofs; i++)
|
||||
{
|
||||
shape0d(i, 0) = u(i);
|
||||
dshape0d(i, 0) = d(i);
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Gives the evaluation of the 1d basis functions and their derivative at all quadrature points
|
||||
*/
|
||||
template <typename Tensor>
|
||||
void ComputeBasis1d(const FiniteElement *fe, int order, Tensor& shape1d,
|
||||
Tensor& dshape1d, bool backward=false)
|
||||
{
|
||||
const TensorBasisElement* tfe(dynamic_cast<const TensorBasisElement*>(fe));
|
||||
const Poly_1D::Basis &basis1d = tfe->GetBasis1D();
|
||||
const IntegrationRule &ir1d = IntRules.Get(Geometry::SEGMENT, order);
|
||||
|
||||
const int quads1d = ir1d.GetNPoints();
|
||||
const int dofs = fe->GetOrder() + 1;
|
||||
|
||||
mfem::Vector u(dofs);
|
||||
mfem::Vector d(dofs);
|
||||
for (int k = 0; k < quads1d; k++)
|
||||
{
|
||||
int ind = backward ? quads1d -1 - k : k;
|
||||
const IntegrationPoint &ip = ir1d.IntPoint(k);
|
||||
basis1d.Eval(ip.x, u, d);
|
||||
for (int i = 0; i < dofs; i++)
|
||||
{
|
||||
shape1d(i, ind) = u(i);
|
||||
dshape1d(i, ind) = d(i);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Gives the evaluation of the 1d basis functions at one point @param x
|
||||
*/
|
||||
template <typename Tensor>
|
||||
void ComputeBasis0d(const FiniteElement *fe, double x, Tensor& shape0d)
|
||||
{
|
||||
const TensorBasisElement* tfe(dynamic_cast<const TensorBasisElement*>(fe));
|
||||
const Poly_1D::Basis &basis0d = tfe->GetBasis1D();
|
||||
|
||||
const int dofs = fe->GetOrder() + 1;
|
||||
|
||||
mfem::Vector u(dofs);
|
||||
mfem::Vector d(dofs);
|
||||
basis0d.Eval(x, u, d);
|
||||
for (int i = 0; i < dofs; i++)
|
||||
{
|
||||
shape0d(i, 0) = u(i);
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Gives the evaluation of the 1d basis functions at all quadrature points
|
||||
*/
|
||||
template <typename Tensor>
|
||||
void ComputeBasis1d(const FiniteElement *fe, int order, Tensor& shape1d, bool backward=false)
|
||||
{
|
||||
const TensorBasisElement* tfe(dynamic_cast<const TensorBasisElement*>(fe));
|
||||
const Poly_1D::Basis &basis1d = tfe->GetBasis1D();
|
||||
const IntegrationRule &ir1d = IntRules.Get(Geometry::SEGMENT, order);
|
||||
|
||||
const int quads1d = ir1d.GetNPoints();
|
||||
const int dofs = fe->GetOrder() + 1;
|
||||
|
||||
mfem::Vector u(dofs);
|
||||
mfem::Vector d(dofs);
|
||||
for (int k = 0; k < quads1d; k++)
|
||||
{
|
||||
int ind = backward ? quads1d -1 - k : k;
|
||||
const IntegrationPoint &ip = ir1d.IntPoint(k);
|
||||
basis1d.Eval(ip.x, u, d);
|
||||
for (int i = 0; i < dofs; i++)
|
||||
{
|
||||
shape1d(i, ind) = u(i);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template <PAOp Op>
|
||||
class TensorBasis
|
||||
{
|
||||
protected:
|
||||
const int dim;
|
||||
|
||||
private:
|
||||
typedef Tensor<2> Tensor2d;
|
||||
Tensor2d shape1d, dshape1d;
|
||||
|
||||
public:
|
||||
TensorBasis(mfem::FiniteElementSpace* fes, const int order)
|
||||
: dim(fes->GetFE(0)->GetDim()),
|
||||
shape1d(GetNDofs1d(fes),GetNQuads1d(order)),
|
||||
dshape1d(GetNDofs1d(fes),GetNQuads1d(order))
|
||||
{
|
||||
// Store the 1d shape functions and gradients
|
||||
ComputeBasis1d(fes->GetFE(0), order, shape1d, dshape1d);
|
||||
}
|
||||
|
||||
const Tensor2d& getB() const
|
||||
{
|
||||
return shape1d;
|
||||
}
|
||||
|
||||
const Tensor2d& getG() const
|
||||
{
|
||||
return dshape1d;
|
||||
}
|
||||
|
||||
};
|
||||
|
||||
template <>
|
||||
class TensorBasis<BtDB>
|
||||
{
|
||||
protected:
|
||||
const int dim;
|
||||
|
||||
private:
|
||||
typedef Tensor<2> Tensor2d;
|
||||
Tensor2d shape1d;
|
||||
|
||||
public:
|
||||
TensorBasis(mfem::FiniteElementSpace* fes, const int order)
|
||||
: dim(fes->GetFE(0)->GetDim()),
|
||||
shape1d(GetNDofs1d(fes),GetNQuads1d(order))
|
||||
{
|
||||
// Store the 1d shape functions and gradients
|
||||
ComputeBasis1d(fes->GetFE(0), order, shape1d);
|
||||
}
|
||||
|
||||
const Tensor2d& getB() const
|
||||
{
|
||||
return shape1d;
|
||||
}
|
||||
|
||||
};
|
||||
|
||||
|
||||
template <PAOp Op>
|
||||
class FaceTensorBasis: public TensorBasis<Op>
|
||||
{
|
||||
private:
|
||||
typedef Tensor<2> Tensor2d;
|
||||
Tensor2d shape0d0, shape0d1;
|
||||
Tensor2d dshape0d0, dshape0d1;
|
||||
|
||||
public:
|
||||
FaceTensorBasis(mfem::FiniteElementSpace* fes, const int order)
|
||||
: TensorBasis<Op>(fes,order),
|
||||
shape0d0(GetNDofs1d(fes),GetNQuads1d(order)),
|
||||
shape0d1(GetNDofs1d(fes),GetNQuads1d(order))
|
||||
{
|
||||
// Store the two 0d shape functions and gradients
|
||||
// in x = 0.0
|
||||
ComputeBasis0d(fes->GetFE(0), 0.0 , shape0d0, dshape0d0);
|
||||
// in x = 1.0
|
||||
ComputeBasis0d(fes->GetFE(0), 1.0 , shape0d1, dshape0d1);
|
||||
}
|
||||
|
||||
const Tensor2d& getB0d(const int face_id) const
|
||||
{
|
||||
switch(this->dim)
|
||||
{
|
||||
case 1:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://WEST
|
||||
return shape0d0;
|
||||
case 1://EAST
|
||||
return shape0d1;
|
||||
}
|
||||
case 2:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://SOUTH
|
||||
return shape0d0;
|
||||
case 1://EAST
|
||||
return shape0d1;
|
||||
case 2://NORTH
|
||||
return shape0d1;
|
||||
case 3://WEST
|
||||
return shape0d0;
|
||||
}
|
||||
case 3:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://BOTTOM
|
||||
return shape0d0;
|
||||
case 1://SOUTH
|
||||
return shape0d0;
|
||||
case 2://EAST
|
||||
return shape0d1;
|
||||
case 3://NORTH
|
||||
return shape0d1;
|
||||
case 4://WEST
|
||||
return shape0d0;
|
||||
case 5://TOP
|
||||
return shape0d1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
const Tensor2d& getB0dTrial(const int face_id) const
|
||||
{
|
||||
switch(this->dim)
|
||||
{
|
||||
case 1:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://WEST
|
||||
return shape0d1;
|
||||
case 1://EAST
|
||||
return shape0d0;
|
||||
}
|
||||
case 2:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://SOUTH
|
||||
return shape0d1;
|
||||
case 1://EAST
|
||||
return shape0d0;
|
||||
case 2://NORTH
|
||||
return shape0d0;
|
||||
case 3://WEST
|
||||
return shape0d1;
|
||||
}
|
||||
case 3:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://BOTTOM
|
||||
return shape0d1;
|
||||
case 1://SOUTH
|
||||
return shape0d1;
|
||||
case 2://EAST
|
||||
return shape0d0;
|
||||
case 3://NORTH
|
||||
return shape0d0;
|
||||
case 4://WEST
|
||||
return shape0d1;
|
||||
case 5://TOP
|
||||
return shape0d0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
const Tensor2d& getB0dTest(const int face_id) const
|
||||
{
|
||||
switch(this->dim)
|
||||
{
|
||||
case 1:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://WEST
|
||||
return shape0d0;
|
||||
case 1://EAST
|
||||
return shape0d1;
|
||||
}
|
||||
case 2:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://SOUTH
|
||||
return shape0d0;
|
||||
case 1://EAST
|
||||
return shape0d1;
|
||||
case 2://NORTH
|
||||
return shape0d1;
|
||||
case 3://WEST
|
||||
return shape0d0;
|
||||
}
|
||||
case 3:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://BOTTOM
|
||||
return shape0d0;
|
||||
case 1://SOUTH
|
||||
return shape0d0;
|
||||
case 2://EAST
|
||||
return shape0d1;
|
||||
case 3://NORTH
|
||||
return shape0d1;
|
||||
case 4://WEST
|
||||
return shape0d0;
|
||||
case 5://TOP
|
||||
return shape0d1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
const Tensor2d& getG0d(const int face_id) const
|
||||
{
|
||||
switch(this->dim)
|
||||
{
|
||||
case 1:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://WEST
|
||||
return dshape0d0;
|
||||
case 1://EAST
|
||||
return dshape0d1;
|
||||
}
|
||||
case 2:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://SOUTH
|
||||
return dshape0d0;
|
||||
case 1://EAST
|
||||
return dshape0d1;
|
||||
case 2://NORTH
|
||||
return dshape0d1;
|
||||
case 3://WEST
|
||||
return dshape0d0;
|
||||
}
|
||||
case 3:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://BOTTOM
|
||||
return dshape0d0;
|
||||
case 1://SOUTH
|
||||
return dshape0d0;
|
||||
case 2://EAST
|
||||
return dshape0d1;
|
||||
case 3://NORTH
|
||||
return dshape0d1;
|
||||
case 4://WEST
|
||||
return dshape0d0;
|
||||
case 5://TOP
|
||||
return dshape0d1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
const Tensor2d& getG0dTrial(const int face_id) const
|
||||
{
|
||||
switch(this->dim)
|
||||
{
|
||||
case 1:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://WEST
|
||||
return dshape0d1;
|
||||
case 1://EAST
|
||||
return dshape0d0;
|
||||
}
|
||||
case 2:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://SOUTH
|
||||
return dshape0d1;
|
||||
case 1://EAST
|
||||
return dshape0d0;
|
||||
case 2://NORTH
|
||||
return dshape0d0;
|
||||
case 3://WEST
|
||||
return dshape0d1;
|
||||
}
|
||||
case 3:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://BOTTOM
|
||||
return dshape0d1;
|
||||
case 1://SOUTH
|
||||
return dshape0d1;
|
||||
case 2://EAST
|
||||
return dshape0d0;
|
||||
case 3://NORTH
|
||||
return dshape0d0;
|
||||
case 4://WEST
|
||||
return dshape0d1;
|
||||
case 5://TOP
|
||||
return dshape0d0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
const Tensor2d& getG0dTest(const int face_id) const
|
||||
{
|
||||
switch(this->dim)
|
||||
{
|
||||
case 1:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://WEST
|
||||
return dshape0d0;
|
||||
case 1://EAST
|
||||
return dshape0d1;
|
||||
}
|
||||
case 2:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://SOUTH
|
||||
return dshape0d0;
|
||||
case 1://EAST
|
||||
return dshape0d1;
|
||||
case 2://NORTH
|
||||
return dshape0d1;
|
||||
case 3://WEST
|
||||
return dshape0d0;
|
||||
}
|
||||
case 3:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://BOTTOM
|
||||
return dshape0d0;
|
||||
case 1://SOUTH
|
||||
return dshape0d0;
|
||||
case 2://EAST
|
||||
return dshape0d1;
|
||||
case 3://NORTH
|
||||
return dshape0d1;
|
||||
case 4://WEST
|
||||
return dshape0d0;
|
||||
case 5://TOP
|
||||
return dshape0d1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
};
|
||||
|
||||
template <>
|
||||
class FaceTensorBasis<BtDB>: public TensorBasis<BtDB>
|
||||
{
|
||||
private:
|
||||
typedef Tensor<2> Tensor2d;
|
||||
Tensor2d shape0d0, shape0d1;
|
||||
|
||||
public:
|
||||
FaceTensorBasis(mfem::FiniteElementSpace* fes, const int order)
|
||||
: TensorBasis<BtDB>(fes,order),
|
||||
shape0d0(GetNDofs1d(fes),GetNQuads1d(order)),
|
||||
shape0d1(GetNDofs1d(fes),GetNQuads1d(order))
|
||||
{
|
||||
// Store the two 0d shape functions and gradients
|
||||
// in x = 0.0
|
||||
ComputeBasis0d(fes->GetFE(0), 0.0 , shape0d0);
|
||||
// in x = 1.0
|
||||
ComputeBasis0d(fes->GetFE(0), 1.0 , shape0d1);
|
||||
}
|
||||
|
||||
const Tensor2d& getB0d(const int face_id) const
|
||||
{
|
||||
switch(this->dim)
|
||||
{
|
||||
case 1:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://WEST
|
||||
return shape0d0;
|
||||
case 1://EAST
|
||||
return shape0d1;
|
||||
}
|
||||
case 2:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://SOUTH
|
||||
return shape0d0;
|
||||
case 1://EAST
|
||||
return shape0d1;
|
||||
case 2://NORTH
|
||||
return shape0d1;
|
||||
case 3://WEST
|
||||
return shape0d0;
|
||||
}
|
||||
case 3:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://BOTTOM
|
||||
return shape0d0;
|
||||
case 1://SOUTH
|
||||
return shape0d0;
|
||||
case 2://EAST
|
||||
return shape0d1;
|
||||
case 3://NORTH
|
||||
return shape0d1;
|
||||
case 4://WEST
|
||||
return shape0d0;
|
||||
case 5://TOP
|
||||
return shape0d1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
const Tensor2d& getB0dTrial(const int face_id) const
|
||||
{
|
||||
switch(this->dim)
|
||||
{
|
||||
case 1:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://WEST
|
||||
return shape0d1;
|
||||
case 1://EAST
|
||||
return shape0d0;
|
||||
}
|
||||
case 2:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://SOUTH
|
||||
return shape0d1;
|
||||
case 1://EAST
|
||||
return shape0d0;
|
||||
case 2://NORTH
|
||||
return shape0d0;
|
||||
case 3://WEST
|
||||
return shape0d1;
|
||||
}
|
||||
case 3:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://BOTTOM
|
||||
return shape0d1;
|
||||
case 1://SOUTH
|
||||
return shape0d1;
|
||||
case 2://EAST
|
||||
return shape0d0;
|
||||
case 3://NORTH
|
||||
return shape0d0;
|
||||
case 4://WEST
|
||||
return shape0d1;
|
||||
case 5://TOP
|
||||
return shape0d0;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
const Tensor2d& getB0dTest(const int face_id) const
|
||||
{
|
||||
switch(this->dim)
|
||||
{
|
||||
case 1:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://WEST
|
||||
return shape0d0;
|
||||
case 1://EAST
|
||||
return shape0d1;
|
||||
}
|
||||
case 2:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://SOUTH
|
||||
return shape0d0;
|
||||
case 1://EAST
|
||||
return shape0d1;
|
||||
case 2://NORTH
|
||||
return shape0d1;
|
||||
case 3://WEST
|
||||
return shape0d0;
|
||||
}
|
||||
case 3:
|
||||
switch(face_id)
|
||||
{
|
||||
case 0://BOTTOM
|
||||
return shape0d0;
|
||||
case 1://SOUTH
|
||||
return shape0d0;
|
||||
case 2://EAST
|
||||
return shape0d1;
|
||||
case 3://NORTH
|
||||
return shape0d1;
|
||||
case 4://WEST
|
||||
return shape0d0;
|
||||
case 5://TOP
|
||||
return shape0d1;
|
||||
}
|
||||
}
|
||||
}
|
||||
};
|
||||
|
||||
|
||||
void ScatterDofs(const mfem::FiniteElementSpace* mfes, const Table& eldof, const mfem::Array<int>& dof_map,
|
||||
const GridFunction* nodes, const int dofs, const int dim, const int e,
|
||||
Tensor<2>& LexPointMat);
|
||||
|
||||
/**
|
||||
* Eval the Jacobian of all elements in a Finite Element Space.
|
||||
*/
|
||||
void EvalJacobians( const int dim, const mfem::FiniteElementSpace* fes, const int order,
|
||||
Tensor<1>& J );
|
||||
|
||||
/**
|
||||
* Return the diagonal of a 1d Partial Assembly Operator
|
||||
*/
|
||||
template <int Dim, typename Op>
|
||||
void GetDiag1d(const mfem::FiniteElementSpace& fes, const int order, const Op& op, Tensor<Dim>& diag)
|
||||
{
|
||||
const int dofs1d = GetNDofs1d(fes);
|
||||
const int quads1d = GetNQuads1d(order);
|
||||
const int nb_elts = fes.GetNE();
|
||||
Tensor<2> diagT(diag, dofs1d, nb_elts);
|
||||
auto Dlin = op.getD();
|
||||
Tensor<2> D(Dlin, quads1d, nb_elts);
|
||||
Tensor<2> shape1d(dofs1d,quads1d);
|
||||
ComputeBasis1d( fes.GetFE(0), order, shape1d);
|
||||
|
||||
diagT.zero();
|
||||
for (int e = 0; e < nb_elts; ++e)
|
||||
{
|
||||
for (int j1 = 0; j1 < quads1d; ++j1)
|
||||
{
|
||||
for (int i1 = 0; i1 < dofs1d; ++i1)
|
||||
{
|
||||
diagT(i1,e) += D(j1,e) * shape1d(i1,j1) * shape1d(i1,j1);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Return the diagonal of a 2d Partial Assembly Operator
|
||||
*/
|
||||
template <int Dim, typename Op>
|
||||
void GetDiag2d(const mfem::FiniteElementSpace& fes, const int order, const Op& op, Tensor<Dim>& diag)
|
||||
{
|
||||
const int dofs1d = GetNDofs1d(fes);
|
||||
const int quads1d = GetNQuads1d(order);
|
||||
const int nb_elts = fes.GetNE();
|
||||
Tensor<3> diagT(diag, dofs1d, dofs1d, nb_elts);
|
||||
auto Dlin = op.getD();
|
||||
Tensor<3> D(Dlin, quads1d, quads1d, nb_elts);
|
||||
Tensor<2> shape1d(dofs1d,quads1d);
|
||||
ComputeBasis1d( fes.GetFE(0), order, shape1d);
|
||||
|
||||
Tensor<2> T1(dofs1d,quads1d);
|
||||
|
||||
diagT.zero();
|
||||
for (int e = 0; e < nb_elts; ++e)
|
||||
{
|
||||
T1.zero();
|
||||
for (int j2 = 0; j2 < quads1d; ++j2)
|
||||
{
|
||||
for (int j1 = 0; j1 < quads1d; ++j1)
|
||||
{
|
||||
for (int i1 = 0; i1 < dofs1d; ++i1)
|
||||
{
|
||||
T1(i1,j2) += D(j1,j2,e) * shape1d(i1,j1) * shape1d(i1,j1);
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int j2 = 0; j2 < quads1d; ++j2)
|
||||
{
|
||||
for (int i2 = 0; i2 < dofs1d; ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < dofs1d; ++i1)
|
||||
{
|
||||
diagT(i1,i2,e) += T1(i1,j2) * shape1d(i2,j2) * shape1d(i2,j2);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Return the diagonal of a 3d Partial Assembly Operator
|
||||
*/
|
||||
template <int Dim, typename Op>
|
||||
void GetDiag3d(const mfem::FiniteElementSpace& fes, const int order, const Op& op, Tensor<Dim>& diag)
|
||||
{
|
||||
const int dofs1d = GetNDofs1d(fes);
|
||||
const int quads1d = GetNQuads1d(order);
|
||||
const int nb_elts = fes.GetNE();
|
||||
Tensor<4> diagT(diag, dofs1d, dofs1d, dofs1d, nb_elts);
|
||||
auto Dlin = op.getD();
|
||||
Tensor<4> D(Dlin, quads1d, quads1d, quads1d, nb_elts);
|
||||
Tensor<2> shape1d(dofs1d,quads1d);
|
||||
ComputeBasis1d( fes.GetFE(0), order, shape1d);
|
||||
|
||||
Tensor<3> T1(dofs1d,quads1d,quads1d),T2(dofs1d,dofs1d,quads1d);
|
||||
|
||||
diagT.zero();
|
||||
for (int e = 0; e < nb_elts; ++e)
|
||||
{
|
||||
T1.zero();
|
||||
for (int j3 = 0; j3 < quads1d; ++j3)
|
||||
{
|
||||
for (int j2 = 0; j2 < quads1d; ++j2)
|
||||
{
|
||||
for (int j1 = 0; j1 < quads1d; ++j1)
|
||||
{
|
||||
for (int i1 = 0; i1 < dofs1d; ++i1)
|
||||
{
|
||||
T1(i1,j2,j3) += D(j1,j2,j3,e) * shape1d(i1,j1) * shape1d(i1,j1);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
T2.zero();
|
||||
for (int j3 = 0; j3 < quads1d; ++j3)
|
||||
{
|
||||
for (int j2 = 0; j2 < quads1d; ++j2)
|
||||
{
|
||||
for (int i2 = 0; i2 < dofs1d; ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < dofs1d; ++i1)
|
||||
{
|
||||
T2(i1,i2,j3) += T1(i1,j2,j3) * shape1d(i2,j2) * shape1d(i2,j2);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
for (int j3 = 0; j3 < quads1d; ++j3)
|
||||
{
|
||||
for (int i3 = 0; i3 < dofs1d; ++i3)
|
||||
{
|
||||
for (int i2 = 0; i2 < dofs1d; ++i2)
|
||||
{
|
||||
for (int i1 = 0; i1 < dofs1d; ++i1)
|
||||
{
|
||||
diagT(i1,i2,i3,e) += T2(i1,i2,j3) * shape1d(i3,j3) * shape1d(i3,j3);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Return the diagonal of a Partial Assembly Operator
|
||||
*/
|
||||
template <int Dim, typename Op>
|
||||
void GetDiag(const FiniteElementSpace& fes, const int order, const Op& op, Tensor<Dim>& diag)
|
||||
{
|
||||
switch(fes.GetFE(0)->GetDim())
|
||||
{
|
||||
case 1:
|
||||
GetDiag1d(fes, order, op, diag);
|
||||
break;
|
||||
case 2:
|
||||
GetDiag2d(fes, order, op, diag);
|
||||
break;
|
||||
case 3:
|
||||
GetDiag3d(fes, order, op, diag);
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,28 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_OCCA)
|
||||
|
||||
#include "vector.hpp"
|
||||
#include "../../linalg/vector.hpp"
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
@@ -0,0 +1,171 @@
|
||||
// Copyright (c) 2010, Lawrence Livermore National Security, LLC. Produced at
|
||||
// the Lawrence Livermore National Laboratory. LLNL-CODE-443211. All Rights
|
||||
// reserved. See file COPYRIGHT for details.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability see http://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the GNU Lesser General Public License (as published by the Free
|
||||
// Software Foundation) version 2.1 dated February 1999.
|
||||
|
||||
#ifndef MFEM_BACKENDS_PA_VECTOR_HPP
|
||||
#define MFEM_BACKENDS_PA_VECTOR_HPP
|
||||
|
||||
#include "../../config/config.hpp"
|
||||
#if defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#include "../base/vector.hpp"
|
||||
#include "array.hpp"
|
||||
#include "../../linalg/vector.hpp"
|
||||
#include "../../linalg/densemat.hpp"
|
||||
#include <cstring>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace pa
|
||||
{
|
||||
|
||||
/**
|
||||
* A simple Vector class with type information.
|
||||
*/
|
||||
template <typename T>
|
||||
class Vector : public Array, public PVector
|
||||
{
|
||||
protected:
|
||||
//
|
||||
// Inherited fields
|
||||
//
|
||||
// DLayout layout;
|
||||
|
||||
/**
|
||||
@name Virtual interface
|
||||
*/
|
||||
///@{
|
||||
|
||||
virtual PVector *DoVectorClone(bool copy_data, void **buffer,
|
||||
int buffer_type_id) const;
|
||||
|
||||
virtual void DoDotProduct(const PVector &x, void *result,
|
||||
int result_type_id) const;
|
||||
|
||||
virtual void DoAxpby(const void *a, const PVector &x,
|
||||
const void *b, const PVector &y,
|
||||
int ab_type_id);
|
||||
|
||||
///@}
|
||||
// End: Virtual interface
|
||||
|
||||
public:
|
||||
Vector(Layout <)
|
||||
: PArray(lt), Array(lt, sizeof(T)), PVector(lt)
|
||||
{ }
|
||||
|
||||
T* GetData() { return Array::GetTypedData<T>(); }
|
||||
const T* GetData() const { return Array::GetTypedData<T>(); }
|
||||
const mfem::Vector GetVectorView(const int offset, const int size) const
|
||||
{
|
||||
return mfem::Vector(static_cast<T*>(data) + offset, size);
|
||||
}
|
||||
const mfem::DenseMatrix GetMatrixView(const int offset, const int height, const int width) const
|
||||
{
|
||||
return mfem::DenseMatrix(static_cast<T*>(data) + offset, height, width);
|
||||
}
|
||||
const mfem::DenseTensor GetTensorView(const int offset, const int i, const int j, const int k) const
|
||||
{
|
||||
return mfem::DenseTensor(static_cast<T*>(data) + offset, i, j, k);
|
||||
// return mfem::DenseTensor().UseExternalData(data+offset,i,j,k);
|
||||
}
|
||||
|
||||
mfem::Vector Wrap();
|
||||
|
||||
const mfem::Vector Wrap() const;
|
||||
|
||||
};
|
||||
|
||||
template<typename T>
|
||||
PVector* Vector<T>::DoVectorClone(bool copy_data, void **buffer,
|
||||
int buffer_type_id) const
|
||||
{
|
||||
MFEM_ASSERT(buffer_type_id == ScalarId<T>::value, "The buffer has a different type.");
|
||||
Layout& lt = static_cast<Layout&>(*layout);
|
||||
Vector<T> *new_vector = new Vector<T>(lt);
|
||||
if (copy_data)
|
||||
{
|
||||
memcpy(new_vector->GetData(), data, layout->Size()*sizeof(T));
|
||||
}
|
||||
if (buffer)
|
||||
{
|
||||
*buffer = new_vector->GetData();
|
||||
}
|
||||
return new_vector;
|
||||
}
|
||||
|
||||
template<typename T>
|
||||
void Vector<T>::DoDotProduct(const PVector &x, void *result,
|
||||
int result_type_id) const
|
||||
{
|
||||
MFEM_ASSERT(result_type_id == ScalarId<T>::value, "The buffer has a different type.");
|
||||
const T* data_v1 = this->GetData();
|
||||
const T* data_v2 = x.As<Vector<T>>().GetData();
|
||||
T& result_d = *static_cast<T*>(result);
|
||||
result_d = 0;
|
||||
for (std::size_t i = 0; i < layout->Size(); ++i)
|
||||
{
|
||||
result_d += data_v1[i] * data_v2[i];
|
||||
}
|
||||
}
|
||||
|
||||
template<typename T>
|
||||
void Vector<T>::DoAxpby(const void *a, const PVector &x,
|
||||
const void *b, const PVector &y,
|
||||
int ab_type_id)
|
||||
{
|
||||
MFEM_ASSERT(ab_type_id == ScalarId<T>::value, "The buffer has a different type.");
|
||||
const T& va = *static_cast<const T*>(a);
|
||||
const T& vb = *static_cast<const T*>(b);
|
||||
if (va != 0.0 && vb != 0.0) {
|
||||
const T* vx = x.As<Vector<T>>().GetData();
|
||||
const T* vy = y.As<Vector<T>>().GetData();
|
||||
T* typed_data = GetData();
|
||||
for (std::size_t i = 0; i < layout->Size(); ++i)
|
||||
{
|
||||
typed_data[i] = va * vx[i] + vb * vy[i];
|
||||
}
|
||||
} else if (va == 0.0) {
|
||||
const T* vy = y.As<Vector<T>>().GetData();
|
||||
T* typed_data = GetData();
|
||||
for (std::size_t i = 0; i < layout->Size(); ++i)
|
||||
{
|
||||
typed_data[i] = vb * vy[i];
|
||||
}
|
||||
} else if (vb == 0.0) {
|
||||
const T* vx = x.As<Vector<T>>().GetData();
|
||||
T* typed_data = GetData();
|
||||
for (std::size_t i = 0; i < layout->Size(); ++i)
|
||||
{
|
||||
typed_data[i] = va * vx[i];
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
template<typename T>
|
||||
mfem::Vector Vector<T>::Wrap()
|
||||
{
|
||||
return mfem::Vector(*this);
|
||||
}
|
||||
|
||||
template<typename T>
|
||||
const mfem::Vector Vector<T>::Wrap() const
|
||||
{
|
||||
return mfem::Vector(*const_cast<Vector<T>*>(this));
|
||||
}
|
||||
|
||||
} // namespace mfem::pa
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // defined(MFEM_USE_BACKENDS) && defined(MFEM_USE_PA)
|
||||
|
||||
#endif // MFEM_BACKENDS_PA_VECTOR_HPP
|
||||
@@ -37,3 +37,11 @@
|
||||
#error Building with PETSc (MFEM_USE_PETSC=YES) requires MPI (MFEM_USE_MPI=YES)
|
||||
#endif
|
||||
#endif // MFEM_USE_MPI not defined
|
||||
|
||||
// Macro that returns its first arg when MFEM_USE_BACKENDS is defined, and its
|
||||
// second arg if it is not defined.
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
#define MFEM_IF_BACKENDS(x,y) (x)
|
||||
#else
|
||||
#define MFEM_IF_BACKENDS(x,y) (y)
|
||||
#endif
|
||||
|
||||
@@ -33,6 +33,12 @@
|
||||
// Description of the git commit used to build MFEM.
|
||||
// #define MFEM_GIT_STRING "@MFEM_GIT_STRING@"
|
||||
|
||||
// The absolute path of the MFEM source prefix
|
||||
// #define MFEM_SOURCE_DIR "@MFEM_SOURCE_DIR@"
|
||||
|
||||
// The absolute path of the MFEM installation prefix
|
||||
// #define MFEM_INSTALL_DIR "@MFEM_INSTALL_DIR@"
|
||||
|
||||
// Build the parallel MFEM library.
|
||||
// Requires an MPI compiler, and the libraries HYPRE and METIS.
|
||||
// #define MFEM_USE_MPI
|
||||
@@ -109,6 +115,15 @@
|
||||
// Enable functionality based on the MPFR library.
|
||||
// #define MFEM_USE_MPFR
|
||||
|
||||
// Enable the use of MFEM backends.
|
||||
// #define MFEM_USE_BACKENDS
|
||||
|
||||
// Enable the OCCA backend.
|
||||
// #define MFEM_USE_OCCA
|
||||
|
||||
// Enable the PA backend.
|
||||
// #define MFEM_USE_PA
|
||||
|
||||
// Windows specific options
|
||||
#ifdef _WIN32
|
||||
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
|
||||
|
||||
@@ -13,6 +13,8 @@
|
||||
MFEM_VERSION = @MFEM_VERSION@
|
||||
MFEM_VERSION_STRING = @MFEM_VERSION_STRING@
|
||||
MFEM_GIT_STRING = @MFEM_GIT_STRING@
|
||||
MFEM_SOURCE_DIR = @MFEM_SOURCE_DIR@
|
||||
MFEM_INSTALL_DIR = @MFEM_INSTALL_DIR@
|
||||
MFEM_USE_MPI = @MFEM_USE_MPI@
|
||||
MFEM_USE_METIS = @MFEM_USE_METIS@
|
||||
MFEM_USE_METIS_5 = @MFEM_USE_METIS_5@
|
||||
@@ -37,6 +39,9 @@ MFEM_USE_PETSC = @MFEM_USE_PETSC@
|
||||
MFEM_USE_MPFR = @MFEM_USE_MPFR@
|
||||
MFEM_USE_SIDRE = @MFEM_USE_SIDRE@
|
||||
MFEM_USE_CONDUIT = @MFEM_USE_CONDUIT@
|
||||
MFEM_USE_BACKENDS = @MFEM_USE_BACKENDS@
|
||||
MFEM_USE_OCCA = @MFEM_USE_OCCA@
|
||||
MFEM_USE_PA = @MFEM_USE_PA@
|
||||
|
||||
# Compiler, compile options, and link options
|
||||
MFEM_CXX = @MFEM_CXX@
|
||||
|
||||
@@ -83,6 +83,9 @@ MFEM_MPI_NP = 4
|
||||
# in config.mk and config.hpp.
|
||||
|
||||
MFEM_USE_MPI = NO
|
||||
# FIXME: add MFEM_USE_BACKENDS, MFEM_USE_OCCA to the CMake build system
|
||||
MFEM_USE_BACKENDS = YES
|
||||
MFEM_USE_OCCA = YES
|
||||
MFEM_USE_METIS = $(MFEM_USE_MPI)
|
||||
MFEM_USE_METIS_5 = NO
|
||||
MFEM_DEBUG = NO
|
||||
@@ -271,6 +274,10 @@ SIDRE_LIB = \
|
||||
-Wl,-rpath,$(HDF5_DIR)/lib -L$(HDF5_DIR)/lib \
|
||||
-lsidre -lslic -laxom_utils -lconduit -lconduit_relay -lhdf5 $(ZLIB_LIB) -ldl
|
||||
|
||||
OCCA_DIR = @MFEM_DIR@/../occa
|
||||
OCCA_OPT = -I$(OCCA_DIR)/include
|
||||
OCCA_LIB = -Wl,-rpath,$(OCCA_DIR)/lib -L$(OCCA_DIR)/lib -locca
|
||||
|
||||
# If YES, enable some informational messages
|
||||
VERBOSE = NO
|
||||
|
||||
|
||||
@@ -760,6 +760,7 @@ WARN_LOGFILE =
|
||||
|
||||
INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
|
||||
@MFEM_SOURCE_DIR@/mfem.hpp \
|
||||
@MFEM_SOURCE_DIR@/backends/base \
|
||||
@MFEM_SOURCE_DIR@/config \
|
||||
@MFEM_SOURCE_DIR@/general \
|
||||
@MFEM_SOURCE_DIR@/linalg \
|
||||
|
||||
+21
-12
@@ -44,6 +44,8 @@ using namespace mfem;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
tic_toc.Clear();
|
||||
tic_toc.Start();
|
||||
// 1. Parse command-line options.
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
@@ -154,18 +156,25 @@ int main(int argc, char *argv[])
|
||||
|
||||
cout << "Size of linear system: " << A.Height() << endl;
|
||||
|
||||
#ifndef MFEM_USE_SUITESPARSE
|
||||
// 10. Define a simple symmetric Gauss-Seidel preconditioner and use it to
|
||||
// solve the system A X = B with PCG.
|
||||
GSSmoother M(A);
|
||||
PCG(A, M, B, X, 1, 200, 1e-12, 0.0);
|
||||
#else
|
||||
// 10. If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
|
||||
UMFPackSolver umf_solver;
|
||||
umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
umf_solver.SetOperator(A);
|
||||
umf_solver.Mult(B, X);
|
||||
#endif
|
||||
// #ifndef MFEM_USE_SUITESPARSE
|
||||
// // 10. Define a simple symmetric Gauss-Seidel preconditioner and use it to
|
||||
// // solve the system A X = B with PCG.
|
||||
// GSSmoother M(A);
|
||||
// PCG(A, M, B, X, 1, 200, 1e-12, 0.0);
|
||||
// #else
|
||||
// // 10. If MFEM was compiled with SuiteSparse, use UMFPACK to solve the system.
|
||||
// UMFPackSolver umf_solver;
|
||||
// umf_solver.Control[UMFPACK_ORDERING] = UMFPACK_ORDERING_METIS;
|
||||
// umf_solver.SetOperator(A);
|
||||
// umf_solver.Mult(B, X);
|
||||
// #endif
|
||||
tic_toc.Stop();
|
||||
cout << " Initialization time: " << tic_toc.RealTime() << "s." << endl;
|
||||
tic_toc.Clear();
|
||||
tic_toc.Start();
|
||||
CG(A, B, X, 3, 1000, 1e-12, 0.0);
|
||||
tic_toc.Stop();
|
||||
cout << " Computation time: " << tic_toc.RealTime() << "s." << endl;
|
||||
|
||||
// 11. Recover the solution as a finite element grid function.
|
||||
a->RecoverFEMSolution(X, *b, x);
|
||||
|
||||
@@ -0,0 +1,180 @@
|
||||
|
||||
#include <mfem.hpp>
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
tic_toc.Clear();
|
||||
tic_toc.Start();
|
||||
// 1. Parse command-line options.
|
||||
const char *spec = "cpu";
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
bool static_cond = false;
|
||||
bool visualization = 1;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&spec, "-s", "--spec",
|
||||
"Compute resurce specification.");
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree) or -1 for"
|
||||
" isoparametric space.");
|
||||
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
/// Engine *engine = EngineDepot.Select(spec);
|
||||
// string occa_spec("mode: 'Serial'");
|
||||
// string occa_spec("mode: 'CUDA', deviceID: 0");
|
||||
// string occa_spec("mode: 'OpenMP', threads: 4");
|
||||
// string occa_spec("mode: 'OpenCL', deviceID: 0, platformID: 0");
|
||||
string pa_spec("Hello world");
|
||||
|
||||
// SharedPtr<Engine> engine(new mfem::occa::Engine(occa_spec));
|
||||
// SharedPtr<Engine> engine(new mfem::pa::Engine("hello world"));
|
||||
SharedPtr<Engine> engine(new mfem::pa::Engine());
|
||||
|
||||
// 2. Read the mesh from the given mesh file. We can handle triangular,
|
||||
// quadrilateral, tetrahedral, hexahedral, surface and volume meshes with
|
||||
// the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
mesh->SetEngine(*engine);
|
||||
mesh->SetCurvature(1);
|
||||
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 3. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement. We choose 'ref_levels' to be the
|
||||
// largest number that gives a final mesh with no more than 50,000
|
||||
// elements.
|
||||
{
|
||||
int ref_levels =
|
||||
(int)floor(log(50000./mesh->GetNE())/log(2.)/dim);
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 4. Define a finite element space on the mesh. Here we use continuous
|
||||
// Lagrange finite elements of the specified order. If order < 1, we
|
||||
// instead use an isoparametric/isogeometric space.
|
||||
FiniteElementCollection *fec;
|
||||
if (order > 0)
|
||||
{
|
||||
fec = new H1_FECollection(order, dim);
|
||||
}
|
||||
else if (mesh->GetNodes())
|
||||
{
|
||||
fec = mesh->GetNodes()->OwnFEC();
|
||||
cout << "Using isoparametric FEs: " << fec->Name() << endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
fec = new H1_FECollection(order = 1, dim);
|
||||
}
|
||||
FiniteElementSpace *fespace = new FiniteElementSpace(mesh, fec);
|
||||
cout << "Number of finite element unknowns: "
|
||||
<< fespace->GetTrueVSize() << endl;
|
||||
|
||||
// 5. Determine the list of true (i.e. conforming) essential boundary dofs.
|
||||
// In this example, the boundary conditions are defined by marking all
|
||||
// the boundary attributes from the mesh as essential (Dirichlet) and
|
||||
// converting them to a list of true dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
if (mesh->bdr_attributes.Size())
|
||||
{
|
||||
Array<int> ess_bdr(mesh->bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 6. Set up the linear form b(.) which corresponds to the right-hand side of
|
||||
// the FEM linear system, which in this case is (1,phi_i) where phi_i are
|
||||
// the basis functions in the finite element fespace.
|
||||
LinearForm *b = new LinearForm(fespace);
|
||||
ConstantCoefficient one(1.0);
|
||||
b->AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b->Assemble();
|
||||
|
||||
// 7. Define the solution vector x as a finite element grid function
|
||||
// corresponding to fespace. Initialize x with initial guess of zero,
|
||||
// which satisfies the boundary conditions.
|
||||
GridFunction x(fespace);
|
||||
x.Fill(0.0);
|
||||
|
||||
// 8. Set up the bilinear form a(.,.) on the finite element space
|
||||
// corresponding to the Laplacian operator -Delta, by adding the Diffusion
|
||||
// domain integrator.
|
||||
BilinearForm *a = new BilinearForm(fespace);
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
|
||||
// 9. Assemble the bilinear form and the corresponding linear system,
|
||||
// applying any necessary transformations such as: eliminating boundary
|
||||
// conditions, applying conforming constraints for non-conforming AMR,
|
||||
// static condensation, etc.
|
||||
if (static_cond) { a->EnableStaticCondensation(); }
|
||||
a->Assemble();
|
||||
|
||||
OperatorHandle A(Operator::ANY_TYPE);
|
||||
Vector B, X;
|
||||
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
|
||||
|
||||
cout << "Size of linear system: " << A.Ptr()->Height() << endl;
|
||||
|
||||
// 10. Solve the system A X = B with CG.
|
||||
tic_toc.Stop();
|
||||
cout << " Initialization time: " << tic_toc.RealTime() << "s." << endl;
|
||||
tic_toc.Clear();
|
||||
tic_toc.Start();
|
||||
CG(*A.Ptr(), B, X, 3, 1000, 1e-12, 0.0);
|
||||
tic_toc.Stop();
|
||||
cout << " Computation time: " << tic_toc.RealTime() << "s." << endl;
|
||||
|
||||
// 11. Recover the solution as a finite element grid function.
|
||||
a->RecoverFEMSolution(X, *b, x);
|
||||
x.Pull();
|
||||
|
||||
// 12. Save the refined mesh and the solution. This output can be viewed
|
||||
// later using GLVis: "glvis -m refined.mesh -g sol.gf".
|
||||
ofstream mesh_ofs("refined.mesh");
|
||||
mesh_ofs.precision(8);
|
||||
mesh->Print(mesh_ofs);
|
||||
ofstream sol_ofs("sol.gf");
|
||||
sol_ofs.precision(8);
|
||||
x.Save(sol_ofs);
|
||||
|
||||
// 13. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << *mesh << x << flush;
|
||||
}
|
||||
|
||||
// 14. Free the used memory.
|
||||
delete a;
|
||||
delete b;
|
||||
delete fespace;
|
||||
if (order > 0) { delete fec; }
|
||||
delete mesh;
|
||||
|
||||
return 0;
|
||||
}
|
||||
@@ -0,0 +1,212 @@
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Initialize MPI.
|
||||
int num_procs, myid;
|
||||
MPI_Init(&argc, &argv);
|
||||
MPI_Comm_size(MPI_COMM_WORLD, &num_procs);
|
||||
MPI_Comm_rank(MPI_COMM_WORLD, &myid);
|
||||
|
||||
// 2. Parse command-line options.
|
||||
const char *mesh_file = "../data/star.mesh";
|
||||
int order = 1;
|
||||
bool static_cond = false;
|
||||
bool visualization = 1;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Finite element order (polynomial degree) or -1 for"
|
||||
" isoparametric space.");
|
||||
args.AddOption(&static_cond, "-sc", "--static-condensation", "-no-sc",
|
||||
"--no-static-condensation", "Enable static condensation.");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
}
|
||||
MPI_Finalize();
|
||||
return 1;
|
||||
}
|
||||
if (myid == 0)
|
||||
{
|
||||
args.PrintOptions(cout);
|
||||
}
|
||||
|
||||
/// Engine *engine = EngineDepot.Select(spec);
|
||||
|
||||
string occa_spec("mode: 'Serial'");
|
||||
// string occa_spec("mode: 'CUDA', deviceID: 0");
|
||||
// string occa_spec("mode: 'OpenMP', threads: 4");
|
||||
// string occa_spec("mode: 'OpenCL', deviceID: 0, platformID: 0");
|
||||
|
||||
SharedPtr<Engine> engine(new mfem::occa::Engine(MPI_COMM_WORLD, occa_spec));
|
||||
|
||||
// 3. Read the (serial) mesh from the given mesh file on all processors. We
|
||||
// can handle triangular, quadrilateral, tetrahedral, hexahedral, surface
|
||||
// and volume meshes with the same code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
mesh->SetEngine(*engine);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 4. Refine the serial mesh on all processors to increase the resolution. In
|
||||
// this example we do 'ref_levels' of uniform refinement. We choose
|
||||
// 'ref_levels' to be the largest number that gives a final mesh with no
|
||||
// more than 10,000 elements.
|
||||
{
|
||||
int ref_levels =
|
||||
(int)floor(log(10000./mesh->GetNE())/log(2.)/dim);
|
||||
for (int l = 0; l < ref_levels; l++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 5. Define a parallel mesh by a partitioning of the serial mesh. Refine
|
||||
// this mesh further in parallel to increase the resolution. Once the
|
||||
// parallel mesh is defined, the serial mesh can be deleted.
|
||||
ParMesh *pmesh = new ParMesh(MPI_COMM_WORLD, *mesh);
|
||||
delete mesh;
|
||||
{
|
||||
int par_ref_levels = 2;
|
||||
for (int l = 0; l < par_ref_levels; l++)
|
||||
{
|
||||
pmesh->UniformRefinement();
|
||||
}
|
||||
}
|
||||
|
||||
// 6. Define a parallel finite element space on the parallel mesh. Here we
|
||||
// use continuous Lagrange finite elements of the specified order. If
|
||||
// order < 1, we instead use an isoparametric/isogeometric space.
|
||||
FiniteElementCollection *fec;
|
||||
if (order > 0)
|
||||
{
|
||||
fec = new H1_FECollection(order, dim);
|
||||
}
|
||||
else if (pmesh->GetNodes())
|
||||
{
|
||||
fec = pmesh->GetNodes()->OwnFEC();
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Using isoparametric FEs: " << fec->Name() << endl;
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
fec = new H1_FECollection(order = 1, dim);
|
||||
}
|
||||
ParFiniteElementSpace *fespace = new ParFiniteElementSpace(pmesh, fec);
|
||||
HYPRE_Int size = fespace->GlobalTrueVSize();
|
||||
if (myid == 0)
|
||||
{
|
||||
cout << "Number of finite element unknowns: " << size << endl;
|
||||
}
|
||||
|
||||
// 7. Determine the list of true (i.e. parallel conforming) essential
|
||||
// boundary dofs. In this example, the boundary conditions are defined
|
||||
// by marking all the boundary attributes from the mesh as essential
|
||||
// (Dirichlet) and converting them to a list of true dofs.
|
||||
Array<int> ess_tdof_list;
|
||||
if (pmesh->bdr_attributes.Size())
|
||||
{
|
||||
Array<int> ess_bdr(pmesh->bdr_attributes.Max());
|
||||
ess_bdr = 1;
|
||||
fespace->GetEssentialTrueDofs(ess_bdr, ess_tdof_list);
|
||||
}
|
||||
|
||||
// 8. Set up the parallel linear form b(.) which corresponds to the
|
||||
// right-hand side of the FEM linear system, which in this case is
|
||||
// (1,phi_i) where phi_i are the basis functions in fespace.
|
||||
ParLinearForm *b = new ParLinearForm(fespace);
|
||||
ConstantCoefficient one(1.0);
|
||||
b->AddDomainIntegrator(new DomainLFIntegrator(one));
|
||||
b->Assemble();
|
||||
|
||||
// 9. Define the solution vector x as a parallel finite element grid function
|
||||
// corresponding to fespace. Initialize x with initial guess of zero,
|
||||
// which satisfies the boundary conditions.
|
||||
ParGridFunction x(fespace);
|
||||
x.Fill(0.0);
|
||||
|
||||
// 10. Set up the parallel bilinear form a(.,.) on the finite element space
|
||||
// corresponding to the Laplacian operator -Delta, by adding the Diffusion
|
||||
// domain integrator.
|
||||
ParBilinearForm *a = new ParBilinearForm(fespace);
|
||||
a->AddDomainIntegrator(new DiffusionIntegrator(one));
|
||||
|
||||
// 11. Assemble the parallel bilinear form and the corresponding linear
|
||||
// system, applying any necessary transformations such as: parallel
|
||||
// assembly, eliminating boundary conditions, applying conforming
|
||||
// constraints for non-conforming AMR, static condensation, etc.
|
||||
if (static_cond) { a->EnableStaticCondensation(); }
|
||||
a->Assemble();
|
||||
|
||||
OperatorHandle A(Operator::ANY_TYPE);
|
||||
Vector B, X;
|
||||
a->FormLinearSystem(ess_tdof_list, x, *b, A, X, B);
|
||||
|
||||
CGSolver *pcg = new CGSolver(MPI_COMM_WORLD);
|
||||
pcg->SetRelTol(1e-6);
|
||||
pcg->SetAbsTol(0.0);
|
||||
pcg->SetMaxIter(1000);
|
||||
pcg->SetPrintLevel(3);
|
||||
pcg->SetOperator(*A.Ptr());
|
||||
pcg->Mult(B, X);
|
||||
|
||||
// 13. Recover the parallel grid function corresponding to X. This is the
|
||||
// local finite element solution on each processor.
|
||||
a->RecoverFEMSolution(X, *b, x);
|
||||
x.Pull();
|
||||
|
||||
// 14. Save the refined mesh and the solution in parallel. This output can
|
||||
// be viewed later using GLVis: "glvis -np <np> -m mesh -g sol".
|
||||
{
|
||||
ostringstream mesh_name, sol_name;
|
||||
mesh_name << "mesh." << setfill('0') << setw(6) << myid;
|
||||
sol_name << "sol." << setfill('0') << setw(6) << myid;
|
||||
|
||||
ofstream mesh_ofs(mesh_name.str().c_str());
|
||||
mesh_ofs.precision(8);
|
||||
pmesh->Print(mesh_ofs);
|
||||
|
||||
ofstream sol_ofs(sol_name.str().c_str());
|
||||
sol_ofs.precision(8);
|
||||
x.Save(sol_ofs);
|
||||
}
|
||||
|
||||
// 15. Send the solution by socket to a GLVis server.
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock.precision(8);
|
||||
sol_sock << "solution\n" << *pmesh << x << flush;
|
||||
}
|
||||
|
||||
// 16. Free the used memory.
|
||||
delete pcg;
|
||||
delete a;
|
||||
delete b;
|
||||
delete fespace;
|
||||
if (order > 0) { delete fec; }
|
||||
delete pmesh;
|
||||
|
||||
MPI_Finalize();
|
||||
|
||||
return 0;
|
||||
}
|
||||
@@ -0,0 +1,511 @@
|
||||
// MFEM Example 9
|
||||
//
|
||||
// Compile with: make ex9
|
||||
//
|
||||
// Sample runs:
|
||||
// ex9 -m ../data/periodic-segment.mesh -p 0 -r 2 -dt 0.005
|
||||
// ex9 -m ../data/periodic-square.mesh -p 0 -r 2 -dt 0.01 -tf 10
|
||||
// ex9 -m ../data/periodic-hexagon.mesh -p 0 -r 2 -dt 0.01 -tf 10
|
||||
// ex9 -m ../data/periodic-square.mesh -p 1 -r 2 -dt 0.005 -tf 9
|
||||
// ex9 -m ../data/periodic-hexagon.mesh -p 1 -r 2 -dt 0.005 -tf 9
|
||||
// ex9 -m ../data/amr-quad.mesh -p 1 -r 2 -dt 0.002 -tf 9
|
||||
// ex9 -m ../data/star-q3.mesh -p 1 -r 2 -dt 0.005 -tf 9
|
||||
// ex9 -m ../data/disc-nurbs.mesh -p 1 -r 3 -dt 0.005 -tf 9
|
||||
// ex9 -m ../data/disc-nurbs.mesh -p 2 -r 3 -dt 0.005 -tf 9
|
||||
// ex9 -m ../data/periodic-square.mesh -p 3 -r 4 -dt 0.0025 -tf 9 -vs 20
|
||||
// ex9 -m ../data/periodic-cube.mesh -p 0 -r 2 -o 2 -dt 0.02 -tf 8
|
||||
//
|
||||
// Description: This example code solves the time-dependent advection equation
|
||||
// du/dt + v.grad(u) = 0, where v is a given fluid velocity, and
|
||||
// u0(x)=u(0,x) is a given initial condition.
|
||||
//
|
||||
// The example demonstrates the use of Discontinuous Galerkin (DG)
|
||||
// bilinear forms in MFEM (face integrators), the use of explicit
|
||||
// ODE time integrators, the definition of periodic boundary
|
||||
// conditions through periodic meshes, as well as the use of GLVis
|
||||
// for persistent visualization of a time-evolving solution. The
|
||||
// saving of time-dependent data files for external visualization
|
||||
// with VisIt (visit.llnl.gov) is also illustrated.
|
||||
|
||||
#include "mfem.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
#include <algorithm>
|
||||
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
// Choice for the problem setup. The fluid velocity, initial condition and
|
||||
// inflow boundary condition are chosen based on this parameter.
|
||||
int problem;
|
||||
|
||||
// Velocity coefficient
|
||||
void velocity_function(const Vector &x, Vector &v);
|
||||
|
||||
// Initial condition
|
||||
double u0_function(const Vector &x);
|
||||
|
||||
// Inflow boundary condition
|
||||
double inflow_function(const Vector &x);
|
||||
|
||||
// Mesh bounding box
|
||||
Vector bb_min, bb_max;
|
||||
|
||||
|
||||
/** A time-dependent operator for the right-hand side of the ODE. The DG weak
|
||||
form of du/dt = -v.grad(u) is M du/dt = K u + b, where M and K are the mass
|
||||
and advection matrices, and b describes the flow on the boundary. This can
|
||||
be written as a general ODE, du/dt = M^{-1} (K u + b), and this class is
|
||||
used to evaluate the right-hand side. */
|
||||
// class FE_Evolution : public TimeDependentOperator
|
||||
// {
|
||||
// private:
|
||||
// SparseMatrix &M, &K;
|
||||
// const Vector &b;
|
||||
// DSmoother M_prec;
|
||||
// CGSolver M_solver;
|
||||
|
||||
// mutable Vector z;
|
||||
|
||||
// public:
|
||||
// FE_Evolution(SparseMatrix &_M, SparseMatrix &_K, const Vector &_b);
|
||||
|
||||
// virtual void Mult(const Vector &x, Vector &y) const;
|
||||
|
||||
// virtual ~FE_Evolution() { }
|
||||
// };
|
||||
|
||||
class FE_Evolution : public TimeDependentOperator
|
||||
{
|
||||
private:
|
||||
OperatorHandle &M, &K;
|
||||
const Vector &b;
|
||||
|
||||
mutable Vector z;
|
||||
|
||||
public:
|
||||
FE_Evolution(OperatorHandle &_M, OperatorHandle &_K, const Vector &_b);
|
||||
|
||||
virtual void Mult(const Vector &x, Vector &y) const;
|
||||
|
||||
virtual ~FE_Evolution() { }
|
||||
};
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Parse command-line options.
|
||||
problem = 0;
|
||||
const char *mesh_file = "../data/periodic-hexagon.mesh";
|
||||
int ref_levels = 2;
|
||||
int order = 3;
|
||||
int ode_solver_type = 4;
|
||||
double t_final = 10.0;
|
||||
double dt = 0.01;
|
||||
bool visualization = true;
|
||||
bool visit = false;
|
||||
bool binary = false;
|
||||
int vis_steps = 5;
|
||||
|
||||
int precision = 8;
|
||||
cout.precision(precision);
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
args.AddOption(&mesh_file, "-m", "--mesh",
|
||||
"Mesh file to use.");
|
||||
args.AddOption(&problem, "-p", "--problem",
|
||||
"Problem setup to use. See options in velocity_function().");
|
||||
args.AddOption(&ref_levels, "-r", "--refine",
|
||||
"Number of times to refine the mesh uniformly.");
|
||||
args.AddOption(&order, "-o", "--order",
|
||||
"Order (degree) of the finite elements.");
|
||||
args.AddOption(&ode_solver_type, "-s", "--ode-solver",
|
||||
"ODE solver: 1 - Forward Euler,\n\t"
|
||||
" 2 - RK2 SSP, 3 - RK3 SSP, 4 - RK4, 6 - RK6.");
|
||||
args.AddOption(&t_final, "-tf", "--t-final",
|
||||
"Final time; start time is 0.");
|
||||
args.AddOption(&dt, "-dt", "--time-step",
|
||||
"Time step.");
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&visit, "-visit", "--visit-datafiles", "-no-visit",
|
||||
"--no-visit-datafiles",
|
||||
"Save data files for VisIt (visit.llnl.gov) visualization.");
|
||||
args.AddOption(&binary, "-binary", "--binary-datafiles", "-ascii",
|
||||
"--ascii-datafiles",
|
||||
"Use binary (Sidre) or ascii format for VisIt data files.");
|
||||
args.AddOption(&vis_steps, "-vs", "--visualization-steps",
|
||||
"Visualize every n-th timestep.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
args.PrintUsage(cout);
|
||||
return 1;
|
||||
}
|
||||
args.PrintOptions(cout);
|
||||
|
||||
//Engine stuff
|
||||
string pa_spec("Hello world");
|
||||
SharedPtr<Engine> engine(new mfem::pa::Engine());
|
||||
|
||||
|
||||
// 2. Read the mesh from the given mesh file. We can handle geometrically
|
||||
// periodic meshes in this code.
|
||||
Mesh *mesh = new Mesh(mesh_file, 1, 1);
|
||||
mesh->SetEngine(*engine);
|
||||
int dim = mesh->Dimension();
|
||||
|
||||
// 3. Define the ODE solver used for time integration. Several explicit
|
||||
// Runge-Kutta methods are available.
|
||||
ODESolver *ode_solver = NULL;
|
||||
switch (ode_solver_type)
|
||||
{
|
||||
case 1: ode_solver = new ForwardEulerSolver; break;
|
||||
case 2: ode_solver = new RK2Solver(1.0); break;
|
||||
case 3: ode_solver = new RK3SSPSolver; break;
|
||||
case 4: ode_solver = new RK4Solver; break;
|
||||
case 6: ode_solver = new RK6Solver; break;
|
||||
default:
|
||||
cout << "Unknown ODE solver type: " << ode_solver_type << '\n';
|
||||
delete mesh;
|
||||
return 3;
|
||||
}
|
||||
|
||||
// 4. Refine the mesh to increase the resolution. In this example we do
|
||||
// 'ref_levels' of uniform refinement, where 'ref_levels' is a
|
||||
// command-line parameter. If the mesh is of NURBS type, we convert it to
|
||||
// a (piecewise-polynomial) high-order mesh.
|
||||
for (int lev = 0; lev < ref_levels; lev++)
|
||||
{
|
||||
mesh->UniformRefinement();
|
||||
}
|
||||
if (mesh->NURBSext)
|
||||
{
|
||||
mesh->SetCurvature(max(order, 1));
|
||||
}
|
||||
mesh->GetBoundingBox(bb_min, bb_max, max(order, 1));
|
||||
|
||||
// 5. Define the discontinuous DG finite element space of the given
|
||||
// polynomial order on the refined mesh.
|
||||
DG_FECollection fec(order, dim);
|
||||
FiniteElementSpace fes(mesh, &fec);
|
||||
|
||||
cout << "Number of unknowns: " << fes.GetVSize() << endl;
|
||||
|
||||
tic_toc.Clear();
|
||||
tic_toc.Start();
|
||||
|
||||
// 6. Set up and assemble the bilinear and linear forms corresponding to the
|
||||
// DG discretization. The DGTraceIntegrator involves integrals over mesh
|
||||
// interior faces.
|
||||
VectorFunctionCoefficient velocity(dim, velocity_function);
|
||||
FunctionCoefficient inflow(inflow_function);
|
||||
FunctionCoefficient u0(u0_function);
|
||||
|
||||
BilinearForm m(&fes);
|
||||
m.AddDomainIntegrator(new MassIntegrator(NULL));
|
||||
BilinearForm k(&fes);
|
||||
k.AddDomainIntegrator(new ConvectionIntegrator(velocity, -1.0));
|
||||
k.AddInteriorFaceIntegrator(
|
||||
new TransposeIntegrator(new DGTraceIntegrator(velocity, 1.0, -0.5)));
|
||||
Vector d_e;
|
||||
k.AddInteriorFaceIntegrator(new FCTIntegrator(velocity,d_e,1.0,-0.5));
|
||||
k.AddBdrFaceIntegrator(
|
||||
new TransposeIntegrator(new DGTraceIntegrator(velocity, 1.0, -0.5)));
|
||||
|
||||
LinearForm b(&fes);
|
||||
b.AddBdrFaceIntegrator(
|
||||
new BoundaryFlowIntegrator(inflow, velocity, -1.0, -0.5));
|
||||
|
||||
m.Assemble();
|
||||
// m.Finalize();
|
||||
k.Assemble();
|
||||
// int skip_zeros = 0;
|
||||
// k.Assemble(skip_zeros);
|
||||
// k.Finalize(skip_zeros);
|
||||
b.Assemble();
|
||||
|
||||
// 7. Define the initial conditions, save the corresponding grid function to
|
||||
// a file and (optionally) save data in the VisIt format and initialize
|
||||
// GLVis visualization.
|
||||
GridFunction u(&fes);
|
||||
u.ProjectCoefficient(u0);
|
||||
// u.Fill(0.0);
|
||||
|
||||
// 8.
|
||||
Array<int> ess_tdof_list;
|
||||
OperatorHandle K(Operator::ANY_TYPE);
|
||||
Vector B, X;
|
||||
k.FormLinearSystem(ess_tdof_list, u, b, K, X, B);
|
||||
OperatorHandle M(Operator::ANY_TYPE);
|
||||
m.FormSystemMatrix(ess_tdof_list, M);
|
||||
|
||||
tic_toc.Stop();
|
||||
cout << " Initialization time: " << tic_toc.RealTime() << "s." << endl;
|
||||
|
||||
{
|
||||
ofstream omesh("ex9.mesh");
|
||||
omesh.precision(precision);
|
||||
mesh->Print(omesh);
|
||||
ofstream osol("ex9-init.gf");
|
||||
osol.precision(precision);
|
||||
u.Save(osol);
|
||||
}
|
||||
|
||||
// Create data collection for solution output: either VisItDataCollection for
|
||||
// ascii data files, or SidreDataCollection for binary data files.
|
||||
DataCollection *dc = NULL;
|
||||
if (visit)
|
||||
{
|
||||
if (binary)
|
||||
{
|
||||
#ifdef MFEM_USE_SIDRE
|
||||
dc = new SidreDataCollection("Example9", mesh);
|
||||
#else
|
||||
MFEM_ABORT("Must build with MFEM_USE_SIDRE=YES for binary output.");
|
||||
#endif
|
||||
}
|
||||
else
|
||||
{
|
||||
dc = new VisItDataCollection("Example9", mesh);
|
||||
dc->SetPrecision(precision);
|
||||
}
|
||||
dc->RegisterField("solution", &u);
|
||||
dc->SetCycle(0);
|
||||
dc->SetTime(0.0);
|
||||
dc->Save();
|
||||
}
|
||||
|
||||
socketstream sout;
|
||||
if (visualization)
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
sout.open(vishost, visport);
|
||||
if (!sout)
|
||||
{
|
||||
cout << "Unable to connect to GLVis server at "
|
||||
<< vishost << ':' << visport << endl;
|
||||
visualization = false;
|
||||
cout << "GLVis visualization disabled.\n";
|
||||
}
|
||||
else
|
||||
{
|
||||
sout.precision(precision);
|
||||
sout << "solution\n" << *mesh << u;
|
||||
sout << "pause\n";
|
||||
sout << flush;
|
||||
cout << "GLVis visualization paused."
|
||||
<< " Press space (in the GLVis window) to resume it.\n";
|
||||
}
|
||||
}
|
||||
|
||||
// 8. Define the time-dependent evolution operator describing the ODE
|
||||
// right-hand side, and perform time-integration (looping over the time
|
||||
// iterations, ti, with a time-step dt).
|
||||
FE_Evolution adv(M, K, B);
|
||||
|
||||
double t = 0.0;
|
||||
adv.SetTime(t);
|
||||
ode_solver->Init(adv);
|
||||
|
||||
tic_toc.Clear();
|
||||
tic_toc.Start();
|
||||
|
||||
bool done = false;
|
||||
for (int ti = 0; !done; )
|
||||
{
|
||||
double dt_real = min(dt, t_final - t);
|
||||
ode_solver->Step(u, t, dt_real);
|
||||
ti++;
|
||||
|
||||
done = (t >= t_final - 1e-8*dt);
|
||||
|
||||
if (done || ti % vis_steps == 0)
|
||||
{
|
||||
cout << "time step: " << ti << ", time: " << t << endl;
|
||||
|
||||
if (visualization)
|
||||
{
|
||||
sout << "solution\n" << *mesh << u << flush;
|
||||
}
|
||||
|
||||
if (visit)
|
||||
{
|
||||
dc->SetCycle(ti);
|
||||
dc->SetTime(t);
|
||||
dc->Save();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
tic_toc.Stop();
|
||||
cout << " done, " << tic_toc.RealTime() << "s." << endl;
|
||||
|
||||
// 9. Save the final solution. This output can be viewed later using GLVis:
|
||||
// "glvis -m ex9.mesh -g ex9-final.gf".
|
||||
{
|
||||
ofstream osol("ex9-final.gf");
|
||||
osol.precision(precision);
|
||||
u.Save(osol);
|
||||
}
|
||||
|
||||
// 10. Free the used memory.
|
||||
delete ode_solver;
|
||||
delete dc;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
|
||||
// Implementation of class FE_Evolution
|
||||
// FE_Evolution::FE_Evolution(SparseMatrix &_M, SparseMatrix &_K, const Vector &_b)
|
||||
// : TimeDependentOperator(_M.Size()), M(_M), K(_K), b(_b), z(_M.Size())
|
||||
// {
|
||||
// M_solver.SetPreconditioner(M_prec);
|
||||
// M_solver.SetOperator(M);
|
||||
|
||||
// M_solver.iterative_mode = false;
|
||||
// M_solver.SetRelTol(1e-9);
|
||||
// M_solver.SetAbsTol(0.0);
|
||||
// M_solver.SetMaxIter(100);
|
||||
// M_solver.SetPrintLevel(0);
|
||||
// }
|
||||
FE_Evolution::FE_Evolution(OperatorHandle &_M, OperatorHandle &_K, const Vector &_b)
|
||||
: TimeDependentOperator(*_K.Ptr()), M(_M), K(_K), b(_b), z(_b,false)
|
||||
{
|
||||
}
|
||||
|
||||
void FE_Evolution::Mult(const Vector &x, Vector &y) const
|
||||
{
|
||||
// y = M^{-1} (K x + b)
|
||||
K.Ptr()->Mult(x, z);
|
||||
// z += b;
|
||||
z.Axpby(1.0, z, 1.0, b);
|
||||
// M.Mult(z, y);
|
||||
CG(*M.Ptr(), z, y, 0, 1000, 1e-12, 0.0);
|
||||
}
|
||||
|
||||
|
||||
// Velocity coefficient
|
||||
void velocity_function(const Vector &x, Vector &v)
|
||||
{
|
||||
int dim = x.Size();
|
||||
|
||||
// map to the reference [-1,1] domain
|
||||
Vector X(dim);
|
||||
for (int i = 0; i < dim; i++)
|
||||
{
|
||||
double center = (bb_min[i] + bb_max[i]) * 0.5;
|
||||
X(i) = 2 * (x(i) - center) / (bb_max[i] - bb_min[i]);
|
||||
}
|
||||
|
||||
switch (problem)
|
||||
{
|
||||
case 0:
|
||||
{
|
||||
// Translations in 1D, 2D, and 3D
|
||||
switch (dim)
|
||||
{
|
||||
case 1: v(0) = 1.0; break;
|
||||
case 2: v(0) = sqrt(2./3.); v(1) = sqrt(1./3.); break;
|
||||
case 3: v(0) = sqrt(3./6.); v(1) = sqrt(2./6.); v(2) = sqrt(1./6.);
|
||||
break;
|
||||
}
|
||||
break;
|
||||
}
|
||||
case 1:
|
||||
case 2:
|
||||
{
|
||||
// Clockwise rotation in 2D around the origin
|
||||
const double w = M_PI/2;
|
||||
switch (dim)
|
||||
{
|
||||
case 1: v(0) = 1.0; break;
|
||||
case 2: v(0) = w*X(1); v(1) = -w*X(0); break;
|
||||
case 3: v(0) = w*X(1); v(1) = -w*X(0); v(2) = 0.0; break;
|
||||
}
|
||||
break;
|
||||
}
|
||||
case 3:
|
||||
{
|
||||
// Clockwise twisting rotation in 2D around the origin
|
||||
const double w = M_PI/2;
|
||||
double d = max((X(0)+1.)*(1.-X(0)),0.) * max((X(1)+1.)*(1.-X(1)),0.);
|
||||
d = d*d;
|
||||
switch (dim)
|
||||
{
|
||||
case 1: v(0) = 1.0; break;
|
||||
case 2: v(0) = d*w*X(1); v(1) = -d*w*X(0); break;
|
||||
case 3: v(0) = d*w*X(1); v(1) = -d*w*X(0); v(2) = 0.0; break;
|
||||
}
|
||||
break;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// Initial condition
|
||||
double u0_function(const Vector &x)
|
||||
{
|
||||
int dim = x.Size();
|
||||
|
||||
// map to the reference [-1,1] domain
|
||||
Vector X(dim);
|
||||
for (int i = 0; i < dim; i++)
|
||||
{
|
||||
double center = (bb_min[i] + bb_max[i]) * 0.5;
|
||||
X(i) = 2 * (x(i) - center) / (bb_max[i] - bb_min[i]);
|
||||
}
|
||||
|
||||
switch (problem)
|
||||
{
|
||||
case 0:
|
||||
case 1:
|
||||
{
|
||||
switch (dim)
|
||||
{
|
||||
case 1:
|
||||
return exp(-40.*pow(X(0)-0.5,2));
|
||||
case 2:
|
||||
case 3:
|
||||
{
|
||||
double rx = 0.45, ry = 0.25, cx = 0., cy = -0.2, w = 10.;
|
||||
if (dim == 3)
|
||||
{
|
||||
const double s = (1. + 0.25*cos(2*M_PI*X(2)));
|
||||
rx *= s;
|
||||
ry *= s;
|
||||
}
|
||||
return ( erfc(w*(X(0)-cx-rx))*erfc(-w*(X(0)-cx+rx)) *
|
||||
erfc(w*(X(1)-cy-ry))*erfc(-w*(X(1)-cy+ry)) )/16;
|
||||
}
|
||||
}
|
||||
}
|
||||
case 2:
|
||||
{
|
||||
double x_ = X(0), y_ = X(1), rho, phi;
|
||||
rho = hypot(x_, y_);
|
||||
phi = atan2(y_, x_);
|
||||
return pow(sin(M_PI*rho),2)*sin(3*phi);
|
||||
}
|
||||
case 3:
|
||||
{
|
||||
const double f = M_PI;
|
||||
return sin(f*X(0))*sin(f*X(1));
|
||||
}
|
||||
}
|
||||
return 0.0;
|
||||
}
|
||||
|
||||
// Inflow boundary condition (zero for the problems considered in this example)
|
||||
double inflow_function(const Vector &x)
|
||||
{
|
||||
switch (problem)
|
||||
{
|
||||
case 0:
|
||||
case 1:
|
||||
case 2:
|
||||
case 3: return 0.0;
|
||||
}
|
||||
return 0.0;
|
||||
}
|
||||
+120
-6
@@ -74,6 +74,12 @@ BilinearForm::BilinearForm (FiniteElementSpace * f)
|
||||
hybridization = NULL;
|
||||
precompute_sparsity = 0;
|
||||
diag_policy = DIAG_KEEP;
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
if (fes->GetVLayout()->HasEngine())
|
||||
{
|
||||
dev_ext = fes->GetVLayout()->GetEngine().MakeBilinearForm(*this);
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
BilinearForm::BilinearForm (FiniteElementSpace * f, BilinearForm * bf, int ps)
|
||||
@@ -126,6 +132,14 @@ BilinearForm::BilinearForm (FiniteElementSpace * f, BilinearForm * bf, int ps)
|
||||
void BilinearForm::EnableStaticCondensation()
|
||||
{
|
||||
delete static_cond;
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
if (fes->GetVLayout()->HasEngine())
|
||||
{
|
||||
static_cond = NULL;
|
||||
MFEM_WARNING("Engine interface does not support static condensation yet");
|
||||
return;
|
||||
}
|
||||
#endif
|
||||
static_cond = new StaticCondensation(fes);
|
||||
if (static_cond->ReducesTrueVSize())
|
||||
{
|
||||
@@ -145,6 +159,15 @@ void BilinearForm::EnableHybridization(FiniteElementSpace *constr_space,
|
||||
const Array<int> &ess_tdof_list)
|
||||
{
|
||||
delete hybridization;
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
if (fes->GetVLayout()->HasEngine())
|
||||
{
|
||||
delete constr_integ;
|
||||
hybridization = NULL;
|
||||
MFEM_WARNING("Engine interface does not support hybridization yet");
|
||||
return;
|
||||
}
|
||||
#endif
|
||||
hybridization = new Hybridization(fes, constr_space);
|
||||
hybridization->SetConstraintIntegrator(constr_integ);
|
||||
hybridization->Init(ess_tdof_list);
|
||||
@@ -313,7 +336,15 @@ void BilinearForm::Assemble (int skip_zeros)
|
||||
Mesh *mesh = fes -> GetMesh();
|
||||
DenseMatrix elmat, *elmat_p;
|
||||
|
||||
int i;
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
if (dev_ext)
|
||||
{
|
||||
// TODO: push the 'skip_zeros' as a parameter to 'dev_ext'
|
||||
|
||||
const bool assembly_done = dev_ext->Assemble();
|
||||
if (assembly_done) { return; }
|
||||
}
|
||||
#endif
|
||||
|
||||
if (mat == NULL)
|
||||
{
|
||||
@@ -331,7 +362,7 @@ void BilinearForm::Assemble (int skip_zeros)
|
||||
|
||||
if (dbfi.Size())
|
||||
{
|
||||
for (i = 0; i < fes -> GetNE(); i++)
|
||||
for (int i = 0; i < fes -> GetNE(); i++)
|
||||
{
|
||||
fes->GetElementVDofs(i, vdofs);
|
||||
if (element_matrices)
|
||||
@@ -388,7 +419,7 @@ void BilinearForm::Assemble (int skip_zeros)
|
||||
}
|
||||
}
|
||||
|
||||
for (i = 0; i < fes -> GetNBE(); i++)
|
||||
for (int i = 0; i < fes -> GetNBE(); i++)
|
||||
{
|
||||
const int bdr_attr = mesh->GetBdrAttribute(i);
|
||||
if (bdr_attr_marker[bdr_attr-1] == 0) { continue; }
|
||||
@@ -426,7 +457,7 @@ void BilinearForm::Assemble (int skip_zeros)
|
||||
Array<int> vdofs2;
|
||||
|
||||
int nfaces = mesh->GetNumFaces();
|
||||
for (i = 0; i < nfaces; i++)
|
||||
for (int i = 0; i < nfaces; i++)
|
||||
{
|
||||
tr = mesh -> GetInteriorFaceTransformations (i);
|
||||
if (tr != NULL)
|
||||
@@ -471,7 +502,7 @@ void BilinearForm::Assemble (int skip_zeros)
|
||||
}
|
||||
}
|
||||
|
||||
for (i = 0; i < fes -> GetNBE(); i++)
|
||||
for (int i = 0; i < fes -> GetNBE(); i++)
|
||||
{
|
||||
const int bdr_attr = mesh->GetBdrAttribute(i);
|
||||
if (bdr_attr_marker[bdr_attr-1] == 0) { continue; }
|
||||
@@ -643,9 +674,91 @@ void BilinearForm::FormSystemMatrix(const Array<int> &ess_tdof_list,
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
Vector &x, Vector &b,
|
||||
OperatorHandle &A, Vector &X, Vector &B,
|
||||
int copy_interior)
|
||||
{
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
if (dev_ext)
|
||||
{
|
||||
MFEM_VERIFY(!static_cond && !hybridization, "");
|
||||
dev_ext->FormLinearSystem(ess_tdof_list, x, b, A, X, B, copy_interior);
|
||||
}
|
||||
else
|
||||
#endif
|
||||
{
|
||||
if (A.Type() == Operator::MFEM_SPARSEMAT)
|
||||
{
|
||||
SparseMatrix A_sm;
|
||||
FormLinearSystem(ess_tdof_list, x, b, A_sm, X, B, copy_interior);
|
||||
if (static_cond)
|
||||
{
|
||||
A.Reset(&static_cond->GetMatrix(), false);
|
||||
}
|
||||
else if (hybridization)
|
||||
{
|
||||
A.Reset(&hybridization->GetMatrix(), false);
|
||||
}
|
||||
else
|
||||
{
|
||||
A.Reset(mat, false);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Operator::Type is not supported: type_id = " << A.Type());
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::FormSystemMatrix(const Array<int> &ess_tdof_list,
|
||||
OperatorHandle &A)
|
||||
{
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
if (dev_ext)
|
||||
{
|
||||
MFEM_VERIFY(!static_cond && !hybridization, "");
|
||||
dev_ext->FormSystemMatrix(ess_tdof_list, A);
|
||||
}
|
||||
else
|
||||
#endif
|
||||
{
|
||||
if (A.Type() == Operator::MFEM_SPARSEMAT)
|
||||
{
|
||||
SparseMatrix A_sm;
|
||||
FormSystemMatrix(ess_tdof_list, A_sm);
|
||||
if (static_cond)
|
||||
{
|
||||
A.Reset(&static_cond->GetMatrix(), false);
|
||||
}
|
||||
else if (hybridization)
|
||||
{
|
||||
A.Reset(&hybridization->GetMatrix(), false);
|
||||
}
|
||||
else
|
||||
{
|
||||
A.Reset(mat, false);
|
||||
}
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("Operator::Type is not supported: type_id = " << A.Type());
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
void BilinearForm::RecoverFEMSolution(const Vector &X,
|
||||
const Vector &b, Vector &x)
|
||||
{
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
if (dev_ext)
|
||||
{
|
||||
dev_ext->RecoverFEMSolution(X, b, x);
|
||||
return;
|
||||
}
|
||||
#endif
|
||||
|
||||
const SparseMatrix *P = fes->GetConformingProlongation();
|
||||
if (!P) // conforming space
|
||||
{
|
||||
@@ -734,7 +847,8 @@ void BilinearForm::ComputeElementMatrices()
|
||||
}
|
||||
|
||||
void BilinearForm::EliminateEssentialBC(const Array<int> &bdr_attr_is_ess,
|
||||
Vector &sol, Vector &rhs, DiagonalPolicy dpolicy)
|
||||
Vector &sol, Vector &rhs,
|
||||
DiagonalPolicy dpolicy)
|
||||
{
|
||||
Array<int> ess_dofs, conf_ess_dofs;
|
||||
fes->GetEssentialVDofs(bdr_attr_is_ess, ess_dofs);
|
||||
|
||||
@@ -38,6 +38,11 @@ protected:
|
||||
/// FE space on which the form lives.
|
||||
FiniteElementSpace *fes;
|
||||
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
/// Device/Engine extension (smart shared pointer)
|
||||
DBilinearForm dev_ext;
|
||||
#endif
|
||||
|
||||
/// Indicates the Mesh::sequence corresponding to the current state of the
|
||||
/// BilinearForm.
|
||||
long sequence;
|
||||
@@ -285,6 +290,37 @@ public:
|
||||
/// Form the linear system matrix A, see FormLinearSystem() for details.
|
||||
void FormSystemMatrix(const Array<int> &ess_tdof_list, SparseMatrix &A);
|
||||
|
||||
/** Form the linear system @a A @a X = @a B, corresponding to the bilinear
|
||||
form and the r.h.s. linear form (vector) @a b, by applying any necessary
|
||||
transformations such as: eliminating boundary conditions; applying
|
||||
conforming constraints for non-conforming AMR; parallel assembly; static
|
||||
condensation; hybridization.
|
||||
|
||||
The GridFunction-size vector @a x must contain the essential b.c. The
|
||||
BilinearForm and the LinearForm-size vector @a b must be assembled.
|
||||
|
||||
The vector @a X is initialized with a suitable initial guess: when using
|
||||
hybridization, the vector @a X is set to zero; otherwise, the essential
|
||||
entries of @a X are set to the corresponding b.c. and all other entries
|
||||
are set to zero (if @a copy_interior == 0) or copied from @a x (if
|
||||
@a copy_interior != 0).
|
||||
|
||||
This method can be called multiple times (with the same @a ess_tdof_list
|
||||
array) to initialize different right-hand sides and boundary condition
|
||||
values.
|
||||
|
||||
After solving the linear system, the finite element solution @a x can be
|
||||
recovered by calling RecoverFEMSolution() (with the same vectors @a X,
|
||||
@a b, and @a x). */
|
||||
virtual void FormLinearSystem(const Array<int> &ess_tdof_list,
|
||||
Vector &x, Vector &b,
|
||||
OperatorHandle &A, Vector &X, Vector &B,
|
||||
int copy_interior = 0);
|
||||
|
||||
/// Form the linear system matrix @a A, see FormLinearSystem() for details.
|
||||
virtual void FormSystemMatrix(const Array<int> &ess_tdof_list,
|
||||
OperatorHandle &A);
|
||||
|
||||
/// Recover the solution of a linear system formed with FormLinearSystem().
|
||||
/** Call this method after solving a linear system constructed using the
|
||||
FormLinearSystem() method to recover the solution as a GridFunction-size
|
||||
|
||||
+44
-72
@@ -361,6 +361,28 @@ void MixedScalarVectorIntegrator::AssembleElementMatrix2(
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
const IntegrationRule &DiffusionIntegrator::GetRule(
|
||||
const FiniteElement &trial_fe, const FiniteElement &test_fe)
|
||||
{
|
||||
int order;
|
||||
if (trial_fe.Space() == FunctionSpace::Pk)
|
||||
{
|
||||
order = trial_fe.GetOrder() + test_fe.GetOrder() - 2;
|
||||
}
|
||||
else
|
||||
{
|
||||
// order = 2*el.GetOrder() - 2; // <-- this seems to work fine too
|
||||
order = trial_fe.GetOrder() + test_fe.GetOrder() + trial_fe.GetDim() - 1;
|
||||
}
|
||||
|
||||
if (trial_fe.Space() == FunctionSpace::rQk)
|
||||
{
|
||||
return RefinedIntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
return IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
void DiffusionIntegrator::AssembleElementMatrix
|
||||
( const FiniteElement &el, ElementTransformation &Trans,
|
||||
DenseMatrix &elmat )
|
||||
@@ -383,25 +405,7 @@ void DiffusionIntegrator::AssembleElementMatrix
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int order;
|
||||
if (el.Space() == FunctionSpace::Pk)
|
||||
{
|
||||
order = 2*el.GetOrder() - 2;
|
||||
}
|
||||
else
|
||||
// order = 2*el.GetOrder() - 2; // <-- this seems to work fine too
|
||||
{
|
||||
order = 2*el.GetOrder() + dim - 1;
|
||||
}
|
||||
|
||||
if (el.Space() == FunctionSpace::rQk)
|
||||
{
|
||||
ir = &RefinedIntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
else
|
||||
{
|
||||
ir = &IntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
ir = &GetRule(el, el);
|
||||
}
|
||||
|
||||
elmat = 0.0;
|
||||
@@ -461,24 +465,7 @@ void DiffusionIntegrator::AssembleElementMatrix2(
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int order;
|
||||
if (trial_fe.Space() == FunctionSpace::Pk)
|
||||
{
|
||||
order = trial_fe.GetOrder() + test_fe.GetOrder() - 2;
|
||||
}
|
||||
else
|
||||
{
|
||||
order = trial_fe.GetOrder() + test_fe.GetOrder() + dim - 1;
|
||||
}
|
||||
|
||||
if (trial_fe.Space() == FunctionSpace::rQk)
|
||||
{
|
||||
ir = &RefinedIntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
else
|
||||
{
|
||||
ir = &IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
ir = &GetRule(trial_fe, test_fe);
|
||||
}
|
||||
|
||||
elmat = 0.0;
|
||||
@@ -717,6 +704,22 @@ double DiffusionIntegrator::ComputeFluxEnergy
|
||||
}
|
||||
|
||||
|
||||
const IntegrationRule &MassIntegrator::GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
int coeff_order)
|
||||
{
|
||||
// int order = trial_fe.GetOrder() + test_fe.GetOrder();
|
||||
int order = trial_fe.GetOrder() + test_fe.GetOrder() +
|
||||
Trans.OrderW() + coeff_order;
|
||||
|
||||
if (trial_fe.Space() == FunctionSpace::rQk)
|
||||
{
|
||||
return RefinedIntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
return IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
|
||||
void MassIntegrator::AssembleElementMatrix
|
||||
( const FiniteElement &el, ElementTransformation &Trans,
|
||||
DenseMatrix &elmat )
|
||||
@@ -734,17 +737,7 @@ void MassIntegrator::AssembleElementMatrix
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
// int order = 2 * el.GetOrder();
|
||||
int order = 2 * el.GetOrder() + Trans.OrderW();
|
||||
|
||||
if (el.Space() == FunctionSpace::rQk)
|
||||
{
|
||||
ir = &RefinedIntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
else
|
||||
{
|
||||
ir = &IntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
ir = &GetRule(el, el, Trans);
|
||||
}
|
||||
|
||||
elmat = 0.0;
|
||||
@@ -783,9 +776,7 @@ void MassIntegrator::AssembleElementMatrix2(
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int order = trial_fe.GetOrder() + test_fe.GetOrder() + Trans.OrderW();
|
||||
|
||||
ir = &IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
ir = &GetRule(trial_fe, test_fe, Trans);
|
||||
}
|
||||
|
||||
elmat = 0.0;
|
||||
@@ -980,16 +971,7 @@ void VectorMassIntegrator::AssembleElementMatrix
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int order = 2 * el.GetOrder() + Trans.OrderW() + Q_order;
|
||||
|
||||
if (el.Space() == FunctionSpace::rQk)
|
||||
{
|
||||
ir = &RefinedIntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
else
|
||||
{
|
||||
ir = &IntRules.Get(el.GetGeomType(), order);
|
||||
}
|
||||
ir = &MassIntegrator::GetRule(el, el, Trans, Q_order);
|
||||
}
|
||||
|
||||
elmat = 0.0;
|
||||
@@ -1065,17 +1047,7 @@ void VectorMassIntegrator::AssembleElementMatrix2(
|
||||
const IntegrationRule *ir = IntRule;
|
||||
if (ir == NULL)
|
||||
{
|
||||
int order = (trial_fe.GetOrder() + test_fe.GetOrder() +
|
||||
Trans.OrderW() + Q_order);
|
||||
|
||||
if (trial_fe.Space() == FunctionSpace::rQk)
|
||||
{
|
||||
ir = &RefinedIntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
else
|
||||
{
|
||||
ir = &IntRules.Get(trial_fe.GetGeomType(), order);
|
||||
}
|
||||
ir = &MassIntegrator::GetRule(trial_fe, test_fe, Trans, Q_order);
|
||||
}
|
||||
|
||||
elmat = 0.0;
|
||||
|
||||
@@ -18,6 +18,7 @@
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
|
||||
/// Abstract base class BilinearFormIntegrator
|
||||
class BilinearFormIntegrator : public NonlinearFormIntegrator
|
||||
{
|
||||
@@ -83,6 +84,7 @@ public:
|
||||
virtual ~BilinearFormIntegrator() { }
|
||||
};
|
||||
|
||||
|
||||
class TransposeIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
@@ -110,6 +112,10 @@ public:
|
||||
FaceElementTransformations &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
void GetParameters(BilinearFormIntegrator*& _bfi){_bfi=bfi;}
|
||||
|
||||
virtual const char *Name() const { return "transpose"; }
|
||||
|
||||
virtual ~TransposeIntegrator() { if (own_bfi) { delete bfi; } }
|
||||
};
|
||||
|
||||
@@ -1622,6 +1628,15 @@ public:
|
||||
virtual double ComputeFluxEnergy(const FiniteElement &fluxelem,
|
||||
ElementTransformation &Trans,
|
||||
Vector &flux, Vector *d_energy = NULL);
|
||||
|
||||
virtual const char *Name() const { return "diffusion"; }
|
||||
|
||||
virtual Coefficient *GetScalarCoefficient() const { return Q; }
|
||||
|
||||
void GetParameters(Coefficient*& coef) const { coef = Q; }
|
||||
|
||||
static const IntegrationRule &GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe);
|
||||
};
|
||||
|
||||
/** Class for local mass matrix assembling a(u,v) := (Q u, v) */
|
||||
@@ -1649,6 +1664,39 @@ public:
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
virtual const char *Name() const { return "mass"; }
|
||||
|
||||
virtual Coefficient *GetScalarCoefficient() const { return Q; }
|
||||
|
||||
void GetParameters(Coefficient*& coef) const { coef = Q; }
|
||||
|
||||
static const IntegrationRule &GetRule(const FiniteElement &trial_fe,
|
||||
const FiniteElement &test_fe,
|
||||
ElementTransformation &Trans,
|
||||
int coeff_order = 0);
|
||||
};
|
||||
|
||||
class FCTIntegrator : public BilinearFormIntegrator
|
||||
{
|
||||
private:
|
||||
VectorCoefficient* q;
|
||||
Vector* d_e;
|
||||
double a;
|
||||
double b;
|
||||
public:
|
||||
FCTIntegrator(VectorCoefficient& q, Vector& d_e, const double a, const double b, const IntegrationRule* ir = NULL)
|
||||
: BilinearFormIntegrator(ir),
|
||||
q(&q), d_e(&d_e), a(a), b(b) { }
|
||||
|
||||
virtual const char *Name() const { return "fct"; }
|
||||
|
||||
void GetParameters(VectorCoefficient*& q_ptr, Vector*& d_e_ptr, double*& a_ptr, double*& b_ptr){
|
||||
q_ptr = q;
|
||||
d_e_ptr = d_e;
|
||||
a_ptr = &a;
|
||||
b_ptr = &b;
|
||||
}
|
||||
};
|
||||
|
||||
class BoundaryMassIntegrator : public MassIntegrator
|
||||
@@ -1681,6 +1729,14 @@ public:
|
||||
virtual void AssembleElementMatrix(const FiniteElement &,
|
||||
ElementTransformation &,
|
||||
DenseMatrix &);
|
||||
|
||||
virtual const char *Name() const { return "convection"; }
|
||||
|
||||
void GetParameters(VectorCoefficient*& vcoef, double*& a)
|
||||
{
|
||||
vcoef = &Q;
|
||||
a = α
|
||||
}
|
||||
};
|
||||
|
||||
/// alpha (q . grad u, v) using the "group" FE discretization
|
||||
@@ -2066,6 +2122,16 @@ public:
|
||||
const FiniteElement &el2,
|
||||
FaceElementTransformations &Trans,
|
||||
DenseMatrix &elmat);
|
||||
|
||||
virtual const char *Name() const { return "dgtrace"; }
|
||||
|
||||
void GetParameters(Coefficient*& _rho, VectorCoefficient*& _u, double*& _alpha, double*& _beta)
|
||||
{
|
||||
_rho = rho;
|
||||
_u = u;
|
||||
_alpha = α
|
||||
_beta = β
|
||||
}
|
||||
};
|
||||
|
||||
/** Integrator for the DG form:
|
||||
|
||||
@@ -165,8 +165,10 @@ FiniteElementCollection *FiniteElementCollection::New(const char *name)
|
||||
BasisType::GetType(name[3]));
|
||||
}
|
||||
else if (!strncmp(name, "L2_T", 4))
|
||||
{
|
||||
fec = new L2_FECollection(atoi(name + 10), atoi(name + 6),
|
||||
atoi(name + 4));
|
||||
}
|
||||
else if (!strncmp(name, "L2_", 3))
|
||||
{
|
||||
fec = new L2_FECollection(atoi(name + 7), atoi(name + 3));
|
||||
|
||||
+50
-25
@@ -377,6 +377,12 @@ void FiniteElementSpace::GetEssentialTrueDofs(const Array<int> &bdr_attr_is_ess,
|
||||
{
|
||||
R->BooleanMult(ess_vdofs, ess_tdofs);
|
||||
}
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
if (dev_ext)
|
||||
{
|
||||
ess_tdof_list.SetEngine(dev_ext->GetEngine());
|
||||
}
|
||||
#endif
|
||||
MarkerToList(ess_tdofs, ess_tdof_list);
|
||||
}
|
||||
|
||||
@@ -389,12 +395,14 @@ void FiniteElementSpace::MarkerToList(const Array<int> &marker,
|
||||
{
|
||||
if (marker[i]) { num_marked++; }
|
||||
}
|
||||
list.Resize(num_marked);
|
||||
list.Pull(false);
|
||||
list.SetSize(0);
|
||||
list.Reserve(num_marked);
|
||||
for (int i = 0; i < marker.Size(); i++)
|
||||
{
|
||||
if (marker[i]) { list.Append(i); }
|
||||
}
|
||||
list.Push();
|
||||
}
|
||||
|
||||
// static method
|
||||
@@ -642,9 +650,23 @@ void FiniteElementSpace::BuildConformingInterpolation() const
|
||||
if (n_true_dofs == ndofs)
|
||||
{
|
||||
cP = cR = NULL; // will be treated as identities
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
t_layout = v_layout;
|
||||
#endif
|
||||
return;
|
||||
}
|
||||
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
if (mesh->HasEngine())
|
||||
{
|
||||
t_layout = mesh->GetEngine().MakeLayout(n_true_dofs*vdim);
|
||||
}
|
||||
else
|
||||
{
|
||||
t_layout.Reset(new PLayout(n_true_dofs*vdim));
|
||||
}
|
||||
#endif
|
||||
|
||||
// create the conforming restriction matrix cR
|
||||
int *cR_J;
|
||||
{
|
||||
@@ -757,27 +779,6 @@ void FiniteElementSpace::MakeVDimMatrix(SparseMatrix &mat) const
|
||||
delete vmat;
|
||||
}
|
||||
|
||||
|
||||
const SparseMatrix* FiniteElementSpace::GetConformingProlongation() const
|
||||
{
|
||||
if (Conforming()) { return NULL; }
|
||||
if (!cP_is_set) { BuildConformingInterpolation(); }
|
||||
return cP;
|
||||
}
|
||||
|
||||
const SparseMatrix* FiniteElementSpace::GetConformingRestriction() const
|
||||
{
|
||||
if (Conforming()) { return NULL; }
|
||||
if (!cP_is_set) { BuildConformingInterpolation(); }
|
||||
return cR;
|
||||
}
|
||||
|
||||
int FiniteElementSpace::GetNConformingDofs() const
|
||||
{
|
||||
const SparseMatrix* P = GetConformingProlongation();
|
||||
return P ? (P->Width() / vdim) : ndofs;
|
||||
}
|
||||
|
||||
SparseMatrix *FiniteElementSpace::RefinementMatrix_main(
|
||||
const int coarse_ndofs, const Table &coarse_elem_dof,
|
||||
const DenseTensor &localP) const
|
||||
@@ -1108,7 +1109,7 @@ void FiniteElementSpace::Constructor(Mesh *mesh, NURBSExtension *NURBSext,
|
||||
{
|
||||
if (!mesh->NURBSext)
|
||||
{
|
||||
mfem_error("FiniteElementSpace::FiniteElementSpace :\n"
|
||||
mfem_error("FiniteElementSpace::Constructor :\n"
|
||||
" NURBS FE space requires NURBS mesh.");
|
||||
}
|
||||
|
||||
@@ -1124,7 +1125,7 @@ void FiniteElementSpace::Constructor(Mesh *mesh, NURBSExtension *NURBSext,
|
||||
}
|
||||
UpdateNURBS();
|
||||
cP = cR = NULL;
|
||||
cP_is_set = false;
|
||||
cP_is_set = true;
|
||||
}
|
||||
else
|
||||
{
|
||||
@@ -1133,6 +1134,22 @@ void FiniteElementSpace::Constructor(Mesh *mesh, NURBSExtension *NURBSext,
|
||||
Construct();
|
||||
}
|
||||
BuildElementToDofTable();
|
||||
|
||||
#ifdef MFEM_USE_BACKENDS
|
||||
if (mesh->HasEngine())
|
||||
{
|
||||
v_layout = mesh->GetEngine().MakeLayout(GetVSize());
|
||||
if (cP_is_set) { t_layout = v_layout; }
|
||||
// Ensure GetVLayout() and GetTrueVLayout() will work correctly before
|
||||
// calling MakeFESpace().
|
||||
dev_ext = mesh->GetEngine().MakeFESpace(*this);
|
||||
}
|
||||
else
|
||||
{
|
||||
v_layout.Reset(new PLayout(GetVSize()));
|
||||
if (cP_is_set) { t_layout = v_layout; }
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
NURBSExtension *FiniteElementSpace::StealNURBSext()
|
||||
@@ -1160,10 +1177,14 @@ void FiniteElementSpace::UpdateNURBS()
|
||||
ndofs = NURBSext->GetNDof();
|
||||
elem_dof = NURBSext->GetElementDofTable();
|
||||
bdrElem_dof = NURBSext->GetBdrElementDofTable();
|
||||
|
||||
// TODO: update v_layout, t_layout
|
||||
}
|
||||
|
||||
void FiniteElementSpace::Construct()
|
||||
{
|
||||
// called in parallel by ParFiniteElementSpace::Update()
|
||||
|
||||
// This method should be used only for non-NURBS spaces.
|
||||
MFEM_ASSERT(!NURBSext, "internal error");
|
||||
|
||||
@@ -1188,7 +1209,7 @@ void FiniteElementSpace::Construct()
|
||||
fdofs = NULL;
|
||||
cP = NULL;
|
||||
cR = NULL;
|
||||
cP_is_set = false;
|
||||
cP_is_set = Conforming();
|
||||
// Th is initialized/destroyed before this method is called.
|
||||
|
||||
if (mesh->Dimension() == 3 && mesh->GetNE())
|
||||
@@ -1635,6 +1656,10 @@ FiniteElementSpace::~FiniteElementSpace()
|
||||
|
||||
void FiniteElementSpace::Destroy()
|
||||
{
|
||||
// called in parallel by ParFiniteElementSpace::Update()
|
||||
|
||||
// For now, do not reset dev_ext and/or v_layout, t_layout
|
||||
|
||||
delete cR;
|
||||
delete cP;
|
||||
Th.Clear();
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user