blaz
23779e1ab9
ohuih
2024-07-26 08:04:20 -07:00
blaz
772df0ac8d
fist solver for to
2023-03-31 22:13:18 -07:00
blaz
beae687cdd
MMA
2023-03-31 19:19:04 -07:00
blaz
2b09c63c37
Merge branch 'master' into marking
2023-03-31 16:12:54 -07:00
blaz
1b5dedc8f9
drived for shpe-gradients test
2023-03-31 15:27:27 -07:00
Tzanio Kolev
d4bc14a48a
Merge pull request #3466 from mfem/ab-am-fix
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Small fix in Adams Moulton and Adams Bashforth integrators [ab-am-fix]
2023-03-30 11:50:35 -07:00
Tzanio Kolev
34ad9fca15
Merge pull request #3316 from mfem/nurbs-attr
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NURBS patch attributes
2023-03-30 11:50:06 -07:00
Tzanio Kolev
c1a1c0ba16
Merge pull request #3550 from mfem/tmop-fit-bug
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Corrections in TMOP_Integrator::GetSurfaceFittingErrors
2023-03-30 11:48:48 -07:00
blaz
7996b3a776
stress gradients
2023-03-30 09:03:22 -07:00
Tzanio Kolev
bcea3019b4
Merge pull request #3131 from mfem/mesh-ptr-doc-dev
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Adding Doxygen comments for returned pointers in mesh classes [mesh-ptr-doc-dev]
2023-03-28 17:02:33 -07:00
Dylan Copeland
fc279d85ca
CHANGELOG
2023-03-27 10:27:30 -07:00
Tzanio Kolev
7d2be1e37c
Merge branch 'master' into nurbs-attr
2023-03-25 18:12:25 -07:00
Tzanio Kolev
92bf531fab
Merge pull request #3556 from mfem/new-dev-version-4.5.3
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Update version numbers to 4.5.3 -- a new development version
2023-03-24 17:10:58 -07:00
Veselin Dobrev
d054509853
Update version numbers to 4.5.3 -- a new development version
2023-03-24 09:43:38 -07:00
Tzanio Kolev
00b2a0705f
Merge pull request #3384 from mfem/mfem-4.5.2-dev
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Final changes for mfem-4.5.2
2023-03-23 15:33:44 -07:00
Tzanio Kolev
98d4b369ba
Final edits in the CHANGELOG for mfem-4.5.2
2023-03-23 15:30:22 -07:00
Stowell, Mark L
9b3c7e7211
Merge remote-tracking branch 'origin/master' into mesh-ptr-doc-dev
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# Conflicts:
# mesh/mesh.hpp
# mesh/pmesh.hpp
2023-03-23 09:46:31 -07:00
Stowell, Mark L
dada0326ef
Changes suggested by @acfisher
2023-03-23 09:21:14 -07:00
Veselin Dobrev
af6e5e7b21
Merge branch 'master' into mfem-4.5.2-dev
2023-03-21 13:13:59 -07:00
Veselin Dobrev and Tzanio Kolev
0f6cd97b1a
Update CHANGELOG with v4.5.2 release date
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Co-authored-by: Tzanio Kolev <tzanio@llnl.gov >
2023-03-21 13:13:39 -07:00
Veselin Dobrev
2106ea4039
Merge pull request #3532 from mfem/2023-copyright
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Updated COPYRIGHT to 2010-2023
2023-03-21 13:11:37 -07:00
Veselin Dobrev
a152e48fd3
Update config/githooks/pre-push
2023-03-21 11:16:17 -07:00
Vladimir Z Tomov
3c4e67dbe1
unused variable in serial
2023-03-21 10:54:13 -07:00
Vladimir Z Tomov
b0614c26d0
corrections in TMOP_Integrator::GetSurfaceFittingErrors()
2023-03-21 10:42:02 -07:00
blaz
96f6ca5665
shape grad
2023-03-16 23:27:03 -07:00
blaz
76fca89cfb
integrators
2023-03-16 13:18:12 -07:00
blaz
3ea5570959
clean up the old files
2023-03-15 15:16:35 -07:00
blaz
5794e38af8
I do not know the changes :-)
2023-03-15 15:16:03 -07:00
Will Pazner
701870a7da
Merge pull request #3438 from mfem/sjg/pyr-ref-leak
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Fix memory leak in pyramid mesh refinement for MFEM_USE_MEMALLOC
2023-03-15 13:27:07 -07:00
Ido Akkerman
f68365a0a0
Merge branch 'master' into ab-am-fix
2023-03-15 09:10:55 +01:00
Veselin Dobrev
a46650042b
Fix some warnings
2023-03-14 09:11:41 -07:00
Veselin Dobrev
b4bece1e0f
Small tweak in the HiOp header to avoid recursive header
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inclusion: 'linalg.hpp' and 'hiop.hpp' were including each
other (harmless due to header guards).
2023-03-13 06:10:57 -07:00
Veselin Dobrev
e3e413bdae
Fix warnings when building with Ginkgo 1.5.0
2023-03-13 06:09:50 -07:00
Veselin Dobrev
1792b1a90c
In fem/picojson.h, use 'serialize_' instead of '_serialize' to
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avoid a clash with a macro defined in GCC 11.2.
2023-03-13 06:05:40 -07:00
Tzanio Kolev
96e00dc815
Updated COPYRIGHT to 2010-2023
2023-03-11 16:58:18 -08:00
Veselin Dobrev
4f0a7d4773
Small updates:
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* Bugfix in SparseMatrix::SortColumnIndices()
* More general definition of AsConst()
* Fix nvcc warning in miniapps/meshing/reflector.cpp
2023-03-10 23:48:14 -08:00
Ido Akkerman
e4d3533c9c
Fix include 2
2023-03-09 14:16:07 +01:00
Ido Akkerman
b87c6c5ba7
Fix include
2023-03-09 14:14:27 +01:00
Ido Akkerman
1f15ca161a
Merge branch 'ab-am-fix' of https://github.com/mfem/mfem into ab-am-fix
2023-03-09 14:07:06 +01:00
Ido Akkerman
ec6990ce79
Change print mechanicsm and correct includes
2023-03-09 09:18:35 +01:00
Veselin Dobrev
5335942a92
Merge branch 'master' into mfem-4.5.2-dev
2023-03-08 18:44:07 -08:00
Mark L. Stowell
888b8eca6d
Merge pull request #3513 from mfem/shared-msvc-dev-v2
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Add support for shared builds on Windows with MSVC using CMake
2023-03-08 17:39:58 -08:00
Mark L. Stowell
5c6000512d
Merge branch 'master' into shared-msvc-dev-v2
2023-03-08 16:48:16 -08:00
Veselin Dobrev
fe525828ab
Merge pull request #3501 from mfem/task/2023_02_windows_macro_fixes
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changes to enums to avoid windows macro conflicts
2023-03-08 11:22:57 -08:00
Veselin Dobrev
ddfb7d48e2
In CHANGELOG, move a bullet added after v4.5.0 from the
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v4.5.0 section to the v4.5.2 section.
2023-03-07 22:18:14 -08:00
Veselin Dobrev
1d95c85a0d
Merge branch 'master' into mfem-4.5.2-dev
2023-03-07 22:04:28 -08:00
Tzanio Kolev
a275e75549
Merge pull request #3427 from mfem/FindPointsGSLIB-update
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Fix logic for points near but outside domain boundary
2023-03-07 12:45:23 -08:00
Ido Akkerman
2238dadd06
Merge branch 'master' into ab-am-fix
2023-03-07 10:30:14 +01:00
Veselin Dobrev
ea56d41dd3
Mention the shared MSVC build support in CHANGELOG and
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document the MFEM_EXPORT macro in config.hpp.
2023-03-06 17:48:51 -08:00
Veselin Dobrev
119451df1a
Rename NO_ERROR_ to No_Error and REGISTERED_ to Registered
2023-03-06 16:26:45 -08:00
Veselin Dobrev
e941c8ba91
More tweaks in .gitignore and 'make clean'
2023-03-06 02:43:07 -08:00
Veselin Dobrev
fa142c9b59
Small tweaks to .gitignore and 'make clean'
2023-03-06 01:14:53 -08:00
Veselin Dobrev
9d5f62de33
Merge branch 'master' into mfem-4.5.2-dev
2023-03-05 20:27:25 -08:00
Veselin Dobrev
f250ee95bb
Merge pull request #3520 from lcheng9/master
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Initialize two pointers.
2023-03-05 20:24:53 -08:00
Veselin Dobrev
2daf9762a4
Merge branch 'master' into shared-msvc-dev-v2
2023-03-04 21:36:37 -08:00
Veselin Dobrev
8356dd015f
In GitHub actions: replace the static build with a shared
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build in the windows-par-opt job.
2023-03-04 21:32:41 -08:00
Veselin Dobrev
c8801d0d27
Merge pull request #3515 from mfem/bugfix/generalize-addelemvec
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Relax the assert requirement in AddElementVector
2023-03-04 20:24:48 -08:00
Liang
8c8deaed95
Initialize null pointers.
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Some compilers may complain about these two uninitialized pointers, simply resolve it.
2023-03-03 23:24:40 -05:00
Veselin Dobrev
78467f4268
Fix the shared build on Windows with MinGW-w64
2023-03-03 06:36:22 -08:00
Veselin Dobrev
e75ab127c8
Bugfix for GitHub issue #3516
2023-03-02 17:25:15 -08:00
Veselin Dobrev
fff74aca98
Suppress Doxygen warnings in geom.hpp
2023-02-28 21:00:49 -08:00
Ben Chung Yee
ff993ffb1b
Loosen assert in SetSubVector as well
2023-02-28 18:05:58 -08:00
Ben Chung Yee
69d96008ae
Relax the assert requirement in AddElementVector
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The implementation is fine if we just want the dofs.Size() entries of
elemvect, so we only need <= rather than ==
This is currently causing an issue in
ParLinearForm::AssembleSharedFaces, where the integrator returns an
elemvect of size 2x dofs, but we are only appending the local portion of
that vector.
2023-02-28 17:52:26 -08:00
Sebastian Grimberg
0412f7f9ea
Merge branch 'master' into sjg/pyr-ref-leak
2023-02-28 16:24:27 -08:00
Ketan Mittal
72b0bdbcef
serial sample run
2023-02-28 11:50:12 -08:00
Veselin Dobrev
ce505ceab2
In the Appveyor CI, test only the serial shared build since
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both static and shared tests take too long.
Try to speed up the hypre build with -j 4.
2023-02-27 22:50:44 -08:00
Veselin Dobrev and Kenny Weiss
c3dbd8041b
Add support for shared builds on Windows with MSVC using CMake.
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This commit based to a large extend on PR #1401 .
Co-authored-by: Kenny Weiss <kennyweiss@users.noreply.github.com >
2023-02-27 19:31:21 -08:00
Veselin Dobrev
bbd1b42bab
Merge branch 'master' into mfem-4.5.2-dev
2023-02-24 16:49:21 -08:00
Mark L. Stowell
ea5c466486
Merge pull request #3314 from mfem/sjg/dof-to-quad-dev
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Non-tensor H(curl) and H(div) FiniteElement::GetDofToQuad
2023-02-24 16:27:35 -08:00
Mark L. Stowell
82bc4f058d
Merge branch 'master' into sjg/dof-to-quad-dev
2023-02-24 14:34:18 -08:00
Tzanio Kolev
c416dddeae
Merge pull request #3253 from mfem/parGF-grad
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GetGradient methods for face-neighbor elements.
2023-02-24 14:23:37 -08:00
Tzanio Kolev
7aa6e58d07
Merge branch 'master' into parGF-grad
2023-02-24 14:23:29 -08:00
Mark L. Stowell
df01ea1554
Merge branch 'master' into sjg/dof-to-quad-dev
2023-02-24 13:43:25 -08:00
Mark L. Stowell
563b8d455a
Merge pull request #3503 from mfem/fe-coll--fe-for-dim--fix
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Fix an issue in `FiniteElementCollection::FiniteElementForDim`
2023-02-24 13:42:08 -08:00
Mark L. Stowell
e28ed04f52
Merge branch 'master' into sjg/dof-to-quad-dev
2023-02-24 13:05:26 -08:00
Mark L. Stowell
1406569993
Merge branch 'master' into fe-coll--fe-for-dim--fix
2023-02-24 13:00:10 -08:00
Veselin Dobrev
c5b77f1dca
Merge pull request #3474 from mfem/mass-pa-geom
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Use GeometricFactors::DETERMINANTS in PA mass integrator
2023-02-24 12:30:54 -08:00
Veselin Dobrev
546e96c2a2
Merge branch 'master' into mfem-4.5.2-dev
2023-02-23 09:42:52 -08:00
Veselin Dobrev
220b22f33b
Merge pull request #3462 from mfem/cmake-global-flag-fix
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Cmake global flag fix
2023-02-23 09:41:33 -08:00
Veselin Dobrev
b9b17575fb
Merge branch 'master' into mfem-4.5.2-dev
2023-02-23 09:27:28 -08:00
Tzanio Kolev
1789cb6d3f
Merge pull request #3468 from mfem/origin/ms-fix
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Bug fixes in GSLib and TMOP
2023-02-23 07:41:55 -08:00
Ido Akkerman
da7ae3d7fe
Merge branch 'master' into ab-am-fix
2023-02-23 10:50:34 +01:00
Ido Akkerman
ae32fddc73
Merge branch 'ab-am-fix' of https://github.com/mfem/mfem into ab-am-fix
2023-02-23 10:48:08 +01:00
Ido Akkerman
d21eb9f5b2
Remove guard and prevent warning output at first timestep
2023-02-23 10:43:01 +01:00
Veselin Dobrev
946ecc4623
Github actions: use v2.3 of the mfem-build action which solves the
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slow linking on Ubuntu + CMake. Keep the ability to set additional
configuration options in the build matrix.
2023-02-22 23:41:53 -08:00
Veselin Dobrev
86786df48e
Github actions: try another way to pass config-options to the
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Ubuntu + CMake build.
2023-02-22 18:37:39 -08:00
Veselin Dobrev
15aae11753
Try to resolve the slow linking issue on Ubuntu + CMake.
2023-02-22 18:10:04 -08:00
Veselin Dobrev
7cda15237b
Merge branch 'master' into mfem-4.5.2-dev
...
Resolved conflicts:
CHANGELOG
2023-02-22 18:07:58 -08:00
Ketan Mittal
d1689afc84
Merge branch 'master' of https://github.com/mfem/mfem into FindPointsGSLIB-update
2023-02-22 17:59:07 -08:00
Cyrus Harrison
023552d99f
Merge branch 'master' into task/2023_02_windows_macro_fixes
2023-02-21 16:38:44 -08:00
Will Pazner
1f89a88844
Merge pull request #3363 from mfem/mesh-reflect
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Mesh reflector miniapp
2023-02-21 14:38:00 -08:00
Will Pazner
d3d3b6b1c5
Merge pull request #3452 from mfem/static_glvis_init
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Avoid global initialization issues in (p)minimal-surface
2023-02-21 14:37:34 -08:00
Tzanio Kolev
5a0414146c
Merge pull request #3275 from mfem/add_default_constructor
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Add default constructor to ParFiniteElementSpaceHierarchy [add_default_constructor]
2023-02-21 13:51:11 -08:00
Tzanio Kolev
e90514c51f
Merge pull request #3458 from mfem/goto-dev
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Change intersect algorithm to not use goto
2023-02-21 13:50:33 -08:00
Veselin Dobrev
94573fcaec
Merge branch 'master' into mfem-4.5.2-dev
2023-02-21 12:51:03 -08:00
Veselin Dobrev
715175844d
Merge pull request #3412 from mfem/tmop-auto-gamma
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TMOP - balancing of compound metrics
2023-02-21 12:46:27 -08:00
Veselin Dobrev
af73e58ffc
Fix an issue in FiniteElementCollection::FiniteElementForDim for
...
sub-classes that raise errors instead of returning NULL from
calls to FiniteElementForGeometry.
2023-02-21 12:27:59 -08:00
Mathias Rainer Schmidt
534194bb74
- removed comm_free() call from this PR. Should be investigated in future PR to resolve the corresponding memory leak.
2023-02-21 12:07:48 -08:00
Cyrus Harrison
13cccd6c66
style
2023-02-21 11:19:12 -08:00
Cyrus Harrison
06beca6d83
changes to enums to avoid windows macro conflicts
2023-02-21 10:59:20 -08:00
Ben Southworth
6fa71acdd6
fix space in printout
2023-02-21 08:52:20 -07:00
Ben Southworth
1f1fc6e6e5
add missing space
2023-02-21 06:18:35 -07:00
Veselin Dobrev
764898e186
Suppress a warning from CMake about HDF5_ROOT.
...
In MfemCmakeUtilities.cmake, tweak mfem_find_package() and
mfem_get_target_options() to handle imported libraries better.
2023-02-20 15:22:42 -08:00
Ido Akkerman
61848a0627
Fix print if root statement
2023-02-20 16:33:28 +01:00
Ido Akkerman
4c59647387
Fixing compile error and warning message
2023-02-20 14:59:20 +01:00
Veselin Dobrev and Chris White
93cdcae163
Fix some CMake issues in FindNetCDF.cmake related to HDF5
...
Reported-by: Jamie Bramwell <jamiebramwell@users.noreply.github.com >
Co-authored-by: Chris White <white238@users.noreply.github.com >
2023-02-17 16:22:10 -08:00
Will Pazner
fb2b2f0067
Use GeometricFactors::DETERMINANTS in PA mass integrator
2023-02-17 13:57:15 -08:00
Ido Akkerman
ffbb844a22
Add timestep check to AM and AB solvers. FLush history if timestep changes
2023-02-17 17:34:45 +01:00
Mathias Rainer Schmidt
9484091bce
- fixed memory corruption bug
...
- fixed parallel bug
- fixed memory leak
2023-02-16 11:19:41 -08:00
blaz
0b5a765923
volp objective
2023-02-16 08:54:47 -08:00
Hugh Carson
78706f96dc
Further unwind the nested if branch
2023-02-15 13:25:19 -05:00
Ido Akkerman
3c8f827c8e
Small improvement to ODE unit tester
2023-02-15 15:47:32 +01:00
Ido Akkerman
200f146a81
Correct time increment in AB & AM ode integrators
2023-02-15 15:47:20 +01:00
Dylan Copeland
92e11e48f8
Merge branch 'master' into mesh-reflect
2023-02-14 22:25:55 -08:00
Dylan Copeland
42102085ec
Another attempt.
2023-02-14 21:30:51 -08:00
Dylan Copeland
4d95303bf3
Attempting to fix reflector serial test.
2023-02-14 21:01:04 -08:00
Tzanio Kolev
8053bc25e4
Updated CHANGELOG for the mfem-4.5.2 release
2023-02-14 15:02:48 -08:00
Ketan Mittal
1399f10675
change sample runs in miniapp
2023-02-14 13:13:30 -08:00
Frank Wang
d4b6deeeb7
fix bugs
2023-02-14 12:26:03 -08:00
Ketan Mittal
93f7e778cd
Merge branch 'FindPointsGSLIB-update' of https://github.com/mfem/mfem into FindPointsGSLIB-update
2023-02-14 11:54:24 -08:00
Ketan Mittal
8c62969dc7
disable FD+GSLIB+DiscreteAdaptivity
2023-02-14 11:53:09 -08:00
Vladimir Z Tomov
29ec82fcb9
changelog
2023-02-14 11:08:53 -08:00
Tzanio Kolev
1303b3e251
Merge branch 'master' into FindPointsGSLIB-update
2023-02-14 10:13:55 -08:00
Tzanio Kolev
93940754a3
Merge branch 'master' into add_default_constructor
2023-02-14 10:12:33 -08:00
Hugh Carson
69541be811
Change intersect algorithm to not use goto
2023-02-13 12:17:21 -05:00
Vladimir Z Tomov
5937a85546
small fix for sum=1.
2023-02-12 15:37:59 -08:00
Veselin Dobrev
c8aa9544c3
Merge branch 'master' into mfem-4.5.2-dev
2023-02-11 23:33:39 -08:00
Veselin Dobrev
72596e45d4
In defaults.mk, replace the '--amdgpu-target' flag with
...
'--offload-arch' since new versions of hipcc generate warning
about it; older versions should still work fine with
'--offload-arch'.
2023-02-11 23:27:40 -08:00
Vladimir Z Tomov
5061dbd214
avoid possible div by zero
2023-02-10 17:55:26 -08:00
Dylan Copeland
7ded5aae7a
FindFaceNeighbors now returns an Array instead of a set.
2023-02-10 10:21:14 -08:00
Tzanio Kolev
e110cd4554
Merge branch 'master' into parGF-grad
2023-02-09 20:40:38 -08:00
Dylan Copeland
e163306242
Documenting ownership of some tables.
2023-02-09 18:52:13 -08:00
Dylan Copeland
096c5f8db7
Fixed a memory leak.
2023-02-09 18:37:55 -08:00
Sebastian Grimberg
1b8e5e3717
Merge branch 'master' into sjg/dof-to-quad-dev
2023-02-09 14:32:44 -08:00
Tzanio Kolev
61b394409b
Merge pull request #3440 from mfem/lor-space-fix
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Support LOR transfer with smaller LOR spaces
2023-02-09 10:16:11 -08:00
Vladimir Z Tomov
1698c06900
gitignore
2023-02-08 09:25:43 -08:00
camierjs
48e3de797c
Avoid global initialization issues in (p)minimal-surface
2023-02-08 08:58:20 -08:00
Dylan Copeland
f7f20e8542
Add reflector to SEQ_MINIAPPS.
2023-02-07 20:59:47 -08:00
Dylan Copeland
dd40e443c1
Merge branch 'master' of github.com:mfem/mfem into mesh-reflect
2023-02-07 20:59:09 -08:00
Sebastian Grimberg
ae8ed6bb92
Merge branch 'master' into sjg/pyr-ref-leak
2023-02-07 20:25:56 -08:00
Vladimir Z Tomov
7ad3cd3509
autotest fix
2023-02-07 18:45:03 -08:00
Vladimir Z Tomov
371047e628
missing ifdef.
2023-02-07 18:21:37 -08:00
Vladimir Z Tomov
fd4bf50a71
minor
2023-02-07 18:13:11 -08:00
Vladimir Z Tomov
fa89fbfc71
minor
2023-02-07 18:09:57 -08:00
Vladimir Z Tomov
8805b1fd98
Removed the universal averaging stuff.
2023-02-07 17:42:10 -08:00
Vladimir Z Tomov
32d62a23a3
canceled 3d tmop-metric-magnitude for now.
2023-02-07 17:34:43 -08:00
Vladimir Z Tomov
35300fa1b6
Merge branch 'master' into tmop-auto-gamma
2023-02-07 17:14:28 -08:00
Veselin Dobrev
d5f46a61bc
Merge pull request #3411 from mfem/gitlab-ci-retry-push
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Retry git push in autotest GitLab CI
2023-02-07 12:20:24 -08:00
Sebastian Grimberg
538ec0b33d
Merge branch 'master' into sjg/dof-to-quad-dev
2023-02-07 12:06:22 -08:00
Will Pazner
2e8c7a1c07
Handle the case of empty local mesh
2023-02-07 10:02:02 -08:00
Veselin Dobrev
b90350b234
Bugfix for issue #3433
2023-02-06 12:04:44 -08:00
Tzanio Kolev
b8b3dc2f73
Merge branch 'master' into nurbs-attr
2023-02-06 11:02:17 -08:00
Frank Wang
c33a8cebb4
using a simpler changwe
2023-02-06 10:19:04 -08:00
Veselin Dobrev
0a50fe2fde
CMake fix for using (with the tests) and exporting the MPI variables
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MPI_CXX_COMPILE_FLAGS and MPI_CXX_LINK_FLAGS when defined.
2023-02-05 21:26:41 -08:00
Veselin Dobrev
ada669ff40
Merge branch 'master' into mfem-4.5.2-dev
2023-02-05 21:25:46 -08:00
Tzanio Kolev
52162982a8
Merge pull request #2980 from mfem/gmsh-pyr-dev
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Add support for pyramid elements in Gmsh meshes
2023-02-03 15:28:09 -08:00
Tzanio Kolev
69c52e55bd
Merge pull request #3430 from mfem/nodes-doxygen
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Improve Doxygen comments for Mesh::GetNodes and related functions
2023-02-03 15:27:21 -08:00
Tzanio Kolev
23b0fa7e3c
Merge branch 'master' into gmsh-pyr-dev
2023-02-03 15:26:57 -08:00
Dylan Copeland
13504d6116
Merge branch 'master' of github.com:mfem/mfem into mesh-reflect
2023-02-03 15:02:51 -08:00
Dylan Copeland
9aa6b00053
Removed unused variable. Fixed the boundary element orientation. Added some documentation.
2023-02-03 14:58:29 -08:00
Veselin Dobrev
3764f6e15c
Merge branch 'master' into mfem-4.5.2-dev
2023-02-03 13:47:38 -08:00
Will Pazner
a059294d02
Merge pull request #3441 from mfem/missing-inline
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Add missing `inline`
2023-02-03 13:44:56 -08:00
Will Pazner
2e8750410e
Merge pull request #3364 from mfem/fix-hypreparvec-double-free
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Fix double-free of HypreParVector after move with hypre+GPU
2023-02-03 13:43:46 -08:00
Will Pazner
33635307cf
Merge pull request #3405 from mfem/final-rel-norm
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Initial and relative final norm for IterativeSolvers.
2023-02-03 13:42:50 -08:00
Will Pazner
75b1906749
Merge branch 'master' into fix-hypreparvec-double-free
2023-02-03 12:59:55 -08:00
Veselin Dobrev
271c63fbee
Merge pull request #3445 from mfem/update-setup-mpi-action
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Update version of mpi4py/setup-mpi action
2023-02-03 12:35:10 -08:00
Veselin Dobrev
ad37c6af78
Merge pull request #3357 from mfem/docs-get-trans
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Documentation improvements for `GetTransformation()`
2023-02-02 18:56:52 -08:00
Will Pazner
64e61fdc3e
Update version of mpi4py/setup-mpi action
2023-02-01 10:27:46 -08:00
Vladimir Z Tomov
ce74176355
CGSolver norm<0 fix.
2023-01-31 10:40:51 -08:00
Dylan Copeland
08b5a285be
Merge branch 'master' of github.com:mfem/mfem into nurbs-attr
2023-01-30 16:30:40 -08:00
Dylan Copeland
9d62c10fbe
Setting patch boundary elements on setup rather than on demand.
2023-01-30 16:28:04 -08:00
Tom Stitt
6acba0c1f0
add inline to avoid duplicate symbols (discovered with misconfigured compute-device spec)
2023-01-30 12:45:40 -08:00
Sebastian Grimberg
caa1e2c7ae
Update changelog
2023-01-30 08:59:29 -08:00
Tzanio Kolev
e70e80da3f
Merge pull request #3417 from mfem/pbilinearform-fix
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Bugfix in `ParBilinearForm::TrueAddMult`
2023-01-30 08:30:00 -08:00
Tzanio Kolev
2c6d541745
Merge pull request #3285 from mfem/tmop-fix-301
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Fix metric 301.
2023-01-30 08:29:20 -08:00
Vladimir Z Tomov
a92e1600e3
3D perturbations.
2023-01-29 18:23:09 -08:00
Will Pazner
f271e9d549
Allow construction of L2ProjectionGridTransfer::ForwardOperator even when the LOR space is small
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Resolves issue #2429 .
2023-01-28 16:28:11 -08:00
Tzanio Kolev
2f6eb8838f
Merge pull request #3007 from mfem/bugfix/rwa/coarsen-L2-proj
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Use local L2 projection for coarsening L2 spaces on non-conforming AMR meshes [bugfix/rwa/coarsen-L2-proj]
2023-01-27 14:30:06 -08:00
Sebastian Grimberg
c7e701807a
Fix memory leak in pyramid mesh refinement for MFEM_USE_MEMALLOC
2023-01-27 10:51:43 -08:00
Veselin Dobrev
cbfbe68651
Update and sort the list of tests in tests/unit/CMakeLists.txt
2023-01-26 15:03:39 -08:00
Vladimir Z Tomov
8358ce040b
minor
2023-01-25 10:16:23 -08:00
Vladimir Z Tomov
b4934a836c
Tool for checking magnitudes.
2023-01-24 19:58:27 -08:00
Sebastian Grimberg
446eda52c7
Minor style cleanup looking for bug in next
2023-01-24 18:13:03 -08:00
Vladimir Z Tomov
0a3f8bdea5
Reviewer suggestions.
2023-01-24 11:53:44 -08:00
Sebastian Grimberg
b62e11cd34
Merge branch 'master' into sjg/dof-to-quad-dev
2023-01-24 11:47:32 -08:00
Vladimir Z Tomov
61613ae1a5
Merge branch 'master' into tmop-fix-301
2023-01-24 11:44:07 -08:00
Will Pazner
4c9157bd30
Improve Doxygen comments for Mesh::GetNodes and related functions
2023-01-23 15:53:09 -08:00
Will Pazner and Adrien Bernede
21c3272e3f
Use short-circuit && instead of if statement
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Co-authored-by: Adrien Bernede <51493078+adrienbernede@users.noreply.github.com >
2023-01-23 08:50:55 -08:00
Tzanio Kolev
62c65660c8
Merge branch 'master' into gmsh-pyr-dev
2023-01-21 14:56:14 -08:00
Vladimir Z Tomov
16d20ff17f
balancing based on universal perturbed element.
2023-01-20 13:00:51 -08:00
Robert W. Anderson
d3a98b2f01
fix for deprecated operator
2023-01-19 12:30:40 -08:00
Robert W. Anderson
83dfc2bb49
replace Set with SetRow for better performance
2023-01-19 10:47:28 -08:00
Ketan Mittal
058590bb39
fix logic for points near but outside domain boundary
2023-01-19 09:54:49 -08:00
Will Pazner
349ddfd954
Merge pull request #3410 from mfem/mesh-explorer-datacollection-dev
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Adding DataCollection output to mesh-explorer [mesh-explorer-datacollection-dev]
2023-01-18 13:47:38 -08:00
Frank Wang
6ac4a86a15
update
2023-01-14 22:31:53 -08:00
Frank Wang
d729b1b9bf
cmake cuda using target
2023-01-14 22:20:24 -08:00
Mark L. Stowell
3bb1f7921b
Merge branch 'master' into mesh-explorer-datacollection-dev
2023-01-14 09:14:44 -05:00
Will Pazner
715c242f44
Bug fix
2023-01-13 21:40:05 -08:00
Will Pazner
01fde3cecb
Make behavior of ParaViewDataCollection::SetCompression consistent with its Doxygen comment
2023-01-13 18:41:34 -08:00
Veselin Dobrev
6992c1daac
In the mesh-explorer miniapp, use high-order ParaView export when
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the mesh is high-order.
Tweak doxygen comments in class ParaViewDataCollection.
Fix a bug in ParaViewDataCollection::SetCompression -- it still
needs work, I think, so I left a FIXME comment there too.
2023-01-13 15:55:12 -08:00
Vladimir Z Tomov
95c2b08358
Reports the final imbalance of the combinations.
2023-01-13 13:14:10 -08:00
Vladimir Z Tomov
8bce1ab633
Reviewer suggestions.
2023-01-13 10:54:29 -08:00
Veselin Dobrev
479c15a336
Merge branch 'master' into fix-hypreparvec-double-free
2023-01-13 09:13:14 -08:00
Veselin Dobrev
f858ed978d
Make some move-assignment operators safe for self-assignment
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See: https://github.com/isocpp/CppCoreGuidelines/blob/master/CppCoreGuidelines.md#c65-make-move-assignment-safe-for-self-assignment
2023-01-12 17:06:26 -08:00
Veselin Dobrev
aa6b8c24bb
Cleaner implementation of move assignment for HypreParVector using
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the Vector move assignment.
Small simplification in the Vector move assignment operator.
2023-01-12 16:04:59 -08:00
Veselin Dobrev
0905576515
Merge pull request #3403 from mfem/algoim_fix
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Algoim configuration fix
2023-01-12 11:45:55 -08:00
Veselin Dobrev
e401a26051
In ParBilinearForm::TrueAddMult, handle correctly the case when
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the pointer 'pfes' has not changed but the object it points to
has changed, e.g. due to mesh refinement.
2023-01-12 10:28:06 -08:00
Veselin Dobrev
253eac37d2
A few small tweaks and fixes
2023-01-12 07:08:04 -08:00
Vladimir Z Tomov
f282c0c2c5
General balancing of N metrics, moved it into the combo metric class.
2023-01-11 13:46:46 -08:00
Will Pazner
1922df6fd2
Simplify
2023-01-11 12:57:55 -08:00
Mark L. Stowell
22f4f06bae
Merge branch 'master' into mesh-ptr-doc-dev
2023-01-11 15:37:40 -05:00
Stowell, Mark L
05cf37c8c1
Adding CHANGELOG entry
2023-01-11 15:24:27 -05:00
Stowell, Mark L
b561b07712
Changing default ParaViewDataCollection cycle index to zero
2023-01-11 15:07:20 -05:00
Will Pazner
a87373710d
Use git_try_to_push in quartz-baseline
2023-01-11 11:14:52 -08:00
Will Pazner
4ea2860257
Move delay after unsuccessful git push
2023-01-11 11:10:22 -08:00
Will Pazner
d8ccf16b87
Add delay between git push retries
2023-01-11 10:59:36 -08:00
Will Pazner
64ccaa8941
Bug fix
2023-01-11 10:56:33 -08:00
Will Pazner
3937340ec3
Bug fix
2023-01-11 10:52:35 -08:00
Will Pazner
c87fdf7e8b
Retry git push in autotest GitLab CI
2023-01-11 10:16:06 -08:00
Stowell, Mark L
11b1d2a597
Removing extraneous setting (thanks @pazner!)
2023-01-11 12:05:43 -05:00
Stowell, Mark L
ff6fed8ee9
Increased error handling in DataCollection option
2023-01-11 12:05:09 -05:00
Stowell, Mark L
3b98856717
Adding DataCollection output to mesh-explorer
2023-01-11 11:48:39 -05:00
Tzanio Kolev
a598682d68
Merge pull request #3271 from Biswa96/cmake-mingw-install
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Fix DLL install directory in mingw
2023-01-11 08:01:45 -08:00
Veselin Dobrev
3bc57ff6ba
Merge pull request #3394 from mfem/coefficient-unneeded-using
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Remove unneeded `using` statements in coefficient.hpp
2023-01-10 16:25:56 -08:00
Tzanio Kolev
5a6ef6e9e2
Merge branch 'master' into cmake-mingw-install
2023-01-10 14:26:28 -08:00
Veselin Dobrev
a1849e45a3
Merge branch 'master' into coefficient-unneeded-using
2023-01-10 12:29:20 -08:00
Tzanio Kolev
dec0dc4b4d
Merge pull request #3402 from mfem/move-par-transfer-map
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Add Array move constructor, make [Par]TransferMap movable
2023-01-10 12:12:07 -08:00
Sebastian Grimberg
daa8b6b844
Add support for pyramid elements in Gmsh meshes
2023-01-10 10:43:23 -08:00
Sebastian Grimberg
bc43f6fbf1
Merge branch 'master' into sjg/dof-to-quad-dev
2023-01-10 10:42:21 -08:00
Tzanio Kolev
2bf54066e9
Merge branch 'master' into move-par-transfer-map
2023-01-10 10:40:27 -08:00
Will Pazner
7aa756bebb
Doxygen comments for IterativeSolver statistics
2023-01-10 10:28:54 -08:00
Mark L. Stowell
646715d66b
Merge pull request #3075 from mfem/sjg/multigrid-mult-rhs
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`Multigrid::Mult` with multiple RHS
2023-01-10 09:21:32 -05:00
Vladimir Z Tomov
84eb2bee18
minor
2023-01-09 22:47:37 -08:00
Boyan Lazarov
6c54854ddc
Merge branch 'master' into algoim_fix
2023-01-09 21:48:53 -08:00
blaz
c6922112d1
fix in findalgoim
2023-01-09 21:36:14 -08:00
Veselin Dobrev
f64405b283
Merge branch 'master' into sjg/multigrid-mult-rhs
2023-01-09 12:16:28 -08:00
Vladimir Z Tomov
d4eeee31b5
IterativeSolver::GetInitialNorm() and GetFinalRelNorm().
2023-01-09 11:51:57 -08:00
Will Pazner
2ab6da3489
Remove unneeded static_cast
2023-01-08 20:07:36 -08:00
Will Pazner
c5c7acd5cf
Make TransferMap implicitly movable
2023-01-08 20:07:36 -08:00
Will Pazner
eaaa541a16
Make ParTransferMap implicitly movable
2023-01-08 20:07:36 -08:00
Will Pazner
40a0fac667
Add move constructor to Array<T>
2023-01-08 20:07:34 -08:00
BL
4426e33e7e
initial agloim fix
2023-01-08 17:50:34 -08:00
Will Pazner
8754571ef0
Infer root mesh type in GetRootParent
2023-01-08 17:25:39 -08:00
Tzanio Kolev
f00eb000ed
Merge pull request #3387 from mfem/submesh-surface-bdr-fix
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Bugfix for surface submesh boundary elements from volume
2023-01-08 14:48:58 -08:00
Veselin Dobrev
4882231889
Merge branch 'master' into mfem-4.5.2-dev
2023-01-06 09:19:34 -08:00
Will Pazner
cc79e6a1b9
Remove another using statement in coefficient.hpp
2023-01-05 14:59:53 -08:00
Tzanio Kolev
745504e4ab
Merge pull request #3320 from mfem/FaceQuadratureSpace-bug-fix
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Bug fix for non-conforming meshes.
2023-01-05 14:08:05 -08:00
Will Pazner
4e5b88054d
Remove unneeded using statements in coefficient.hpp
2023-01-04 18:44:41 -08:00
Veselin Dobrev
576401f779
Merge pull request #3389 from mfem/fix-gnutls-shadow
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Fix some shadow warnings
2023-01-03 19:43:45 -08:00
Vladimir Z Tomov
bdb6e5a046
wip auto gamma in composite metrics
2023-01-03 14:06:21 -08:00
blaz
4c4ddf3928
hape grad
2023-01-03 12:42:56 -08:00
Veselin Dobrev
12dab69fe7
Merge branch 'master' into fix-gnutls-shadow
2023-01-03 12:42:21 -08:00
Will Pazner
b210fb5398
Merge pull request #3362 from mfem/bugfix/kweiss/quad-face-ctor
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Adds a QuadratureFunction constructor from external data
2023-01-03 12:33:22 -08:00
Veselin Dobrev
f327a1f2fe
Merge branch 'master' into fix-gnutls-shadow
2023-01-03 12:25:21 -08:00
Tzanio Kolev
e81e3f7a55
Merge branch 'master' into bugfix/rwa/coarsen-L2-proj
2023-01-03 11:36:51 -08:00
Will Pazner
2d04785d2b
Update CHANGELOG
2023-01-03 11:33:13 -08:00
Will Pazner
0364cab0f9
Merge remote-tracking branch 'origin/master' into FaceQuadratureSpace-bug-fix
2023-01-03 11:31:26 -08:00
Will Pazner
b35eb5acd2
Merge remote-tracking branch 'origin/master' into bugfix/kweiss/quad-face-ctor
2023-01-03 11:17:25 -08:00
Tzanio Kolev
eeece17619
Merge pull request #3293 from mfem/artv3/raja-launch-updates
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RAJA launch API updates
2023-01-03 11:16:50 -08:00
Will Pazner
2905874bc0
Fix shadow warnings in ND and RT with MFEM_THREAD_SAFE
2022-12-29 14:53:35 -08:00
Will Pazner
a8730f78fd
Fix shadow warning when GNUTLS is enabled
2022-12-29 14:47:36 -08:00
Tzanio Kolev
70bcb774f2
Merge branch 'master' into bugfix/kweiss/quad-face-ctor
2022-12-28 11:06:34 -08:00
Tzanio Kolev
2b3b0ea1e7
Merge branch 'master' into FaceQuadratureSpace-bug-fix
2022-12-28 11:06:18 -08:00
Tzanio Kolev
e53afac528
Merge branch 'master' into mesh-reflect
2022-12-28 11:05:15 -08:00
Tzanio Kolev
fb21cca26e
Merge branch 'master' into bugfix/rwa/coarsen-L2-proj
2022-12-28 11:03:05 -08:00
Veselin Dobrev
f8f20ba147
Merge branch 'master' into mfem-4.5.2-dev
2022-12-28 10:41:48 -08:00
Tzanio Kolev
f93da2f1b8
Merge branch 'master' into submesh-surface-bdr-fix
2022-12-28 10:17:41 -08:00
Tzanio Kolev
e90e6e2b75
Merge pull request #3385 from mfem/gh-actions-homebrew-fix
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Fix GitHub actions failure on MacOS
2022-12-28 10:17:17 -08:00
Veselin Dobrev and @tzanio
fb3d72ce89
Add reviewer suggested comments
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Co-authored-by: @tzanio
2022-12-28 10:08:50 -08:00
Will Pazner
b9efa256b4
Add comment that QuadratureFunction constructor takes a host pointer
2022-12-27 15:08:03 -08:00
Tzanio Kolev
2e89831b1e
Merge branch 'master' into gh-actions-homebrew-fix
2022-12-27 14:33:26 -08:00
Julian Andrej
3258e39120
bugfix for surface submesh boundary elements from volume
2022-12-27 13:49:31 -08:00
Veselin Dobrev
ac1f88ee74
Merge pull request #3369 from mfem/feature/kweiss/caliper-dependencies
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Adds support for optional caliper dependencies to build system
2022-12-25 19:21:05 -08:00
Veselin Dobrev
652e2ba386
GitHub actions: test MacOS fix
2022-12-24 16:15:52 -08:00
Veselin Dobrev
4756a9c405
Fix GitHub actions failure on MacOS
2022-12-24 15:39:40 -08:00
Veselin Dobrev
b657fd4d74
Initial changes for the v4.5.2 release
2022-12-24 15:06:13 -08:00
Tzanio Kolev and Yohann
72f17709e3
Update mesh/mesh.hpp
...
Co-authored-by: Yohann <dudouit1@llnl.gov >
2022-12-22 13:28:11 -08:00
Tzanio Kolev and Yohann
0aeb9b49b0
Update mesh/mesh.hpp
...
Co-authored-by: Yohann <dudouit1@llnl.gov >
2022-12-22 13:28:03 -08:00
Tzanio Kolev
adf7a40c0a
Merge branch 'master' into FaceQuadratureSpace-bug-fix
2022-12-22 13:25:39 -08:00
Kenneth Weiss
46f64bf75f
Merge branch 'master' into feature/kweiss/caliper-dependencies
2022-12-21 10:58:53 -08:00
Kenneth Weiss
326a4177b4
Adds lib64 library paths for caliper, adiak and gotcha
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Per PR suggestion.
2022-12-21 10:58:25 -08:00
Kenneth Weiss
fcb9f6b4c2
Use find_package for adiak and gotcha dependencies in CMake build system
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Per PR suggestion from Veselin.
2022-12-21 10:29:46 -08:00
Tzanio Kolev
e16e2a916f
Merge pull request #3373 from mfem/delete_noret
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Modify Delete_ to not return a value
2022-12-19 15:24:44 -08:00
Tzanio Kolev
c4f16f478b
Merge pull request #3372 from mfem/enzyme_alloc
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Add Enzyme info for allocation mechanisms
2022-12-19 15:23:33 -08:00
Tzanio Kolev
bf8ec1a218
Merge pull request #3334 from mfem/bugfix/submesh-bdr-l2
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Adding SubMesh support for discontinuous fields with vdim > 1
2022-12-17 19:17:24 -08:00
William S. Moses
973b42c57a
Simplify
2022-12-16 17:19:02 -05:00
Veselin Dobrev
0ee0e55a92
Fix the Caliper tests defined in CMake
2022-12-15 18:33:42 -08:00
Tzanio Kolev
1f16c7a309
make style
2022-12-15 16:39:10 -08:00
William S. Moses
ef42d3994a
Add Enzyme info for allocation mechanisms
2022-12-15 18:07:34 -05:00
William S. Moses
0f75a95372
Modifiy Delete_ to not return a value
2022-12-15 18:06:16 -05:00
Dylan Copeland
91946fa48c
Formatting
2022-12-15 12:22:07 -08:00
Dylan Copeland
eadf460df5
Revert SEQ_MINIAPPS.
2022-12-15 11:21:07 -08:00
Dylan Copeland
726ffb93b0
CHANGELOG and a bug fix.
2022-12-15 10:56:26 -08:00
Sebastian Grimberg
7548778722
Rename Mult -> ArrayMult and similar to avoid partially overridden warnings
2022-12-14 18:14:38 -08:00
Dylan Copeland
cffcc25cf1
Made GridFunction::GetVectorGradientHat public. Updated gitignore.
2022-12-14 18:13:55 -08:00
Kenneth Weiss
09331236d2
Adds support for optional caliper dependencies in cmake build system
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If a user's caliper is built against `adiak` or `gotcha`, they can supply
`ADIAK_DIR` and/or `GOTCHA_DIR` config variables.
2022-12-14 12:18:52 -08:00
Kenneth Weiss
be9f6a0d07
Adds support for optional caliper dependencies in make build system
...
If a user's caliper is built against `adiak` or `gotcha`, they can supply
`ADIAK_DIR` and/or `GOTCHA_DIR` config variables.
2022-12-14 12:18:42 -08:00
Dylan Copeland
2c1b05d448
Fixing default options.
2022-12-13 20:28:44 -08:00
Dylan Copeland
1d758dbc66
Fixing documentation.
2022-12-13 19:46:57 -08:00
Dylan Copeland
792184cf2c
Fixing shadowed variable.
2022-12-13 19:33:14 -08:00
Dylan Copeland
e4b71fde61
Moved FindFaceNeighbors to Mesh class. Added documentation.
2022-12-13 19:22:49 -08:00
Veselin Dobrev
4952b82c48
Restore CHANGELOG entries (deleted by mistake?)
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Use C++14 when UMPIRE is enabled.
Fix and enhance FindUMPIRE.cmake.
2022-12-13 18:43:59 -08:00
Arturo Vargas
e3b05bea8e
update raja notes
2022-12-13 15:16:36 -08:00
Tzanio Kolev
831cd98243
Merge branch 'master' into sjg/multigrid-mult-rhs
2022-12-13 11:15:25 -08:00
Tom Stitt
a1e4b59ed9
fix double-free of HypreParVector device memory after move when mfem is built with hypre+gpu; 2 Memories (different host pointer, same device pointer) will be registered, one will be freed when the object is destroyed and MemoryManager::Destroy will try to free the other. use Delete instead of Reset to make sure only one Memory is registered
2022-12-13 08:13:37 -08:00
Dylan Copeland
5982c7624d
Adding missing include.
2022-12-12 21:35:59 -08:00
blaz
ba3fc58806
Merge branch 'master' into marking
2022-12-12 19:39:31 -08:00
Kenneth Weiss
d8a223bd56
Adds a QuadratureFunction constructor over an external data pointer
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This was present in mfem@4.4, but missing in mfem@4.5.
The following call: `QuadratureFunction(qspace, qf_data, vdim);`
is equivalent to: `QuadratureFunction qf; qf.SetSpace(qspace, qf_data, vdim);`
2022-12-12 19:17:32 -08:00
Dylan Copeland
8462d81c7c
Initial implementation of new reflector miniapp.
2022-12-12 16:22:21 -08:00
Stowell, Mark L
30fffb8cc6
Merge remote-tracking branch 'origin/master' into bugfix/submesh-bdr-l2
2022-12-12 14:46:43 -08:00
Stowell, Mark L
b6c88d5b24
Hard coding dimension in unit test to avoid errors in Windows build
2022-12-12 11:59:46 -08:00
Tzanio Kolev
486c43a197
Merge branch 'master' into artv3/raja-launch-updates
2022-12-12 10:50:36 -08:00
Tzanio Kolev
e6ba86462c
Merge pull request #3349 from mfem/l2-integral-support
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Adding support for map type INTEGRAL in GridFunction::GetNodalValues
2022-12-12 08:12:50 -08:00
Tzanio Kolev
26444a366d
Merge pull request #3348 from mfem/cmake-strumpack-metis-fix
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Fix CMake TPLs ordering issue
2022-12-12 08:12:24 -08:00
Tzanio Kolev
51a5982eb6
Merge branch 'master' into artv3/raja-launch-updates
2022-12-11 16:07:13 -08:00
Tzanio Kolev
c5f51d0f12
Merge branch 'master' into bugfix/submesh-bdr-l2
2022-12-11 16:04:33 -08:00
Tzanio Kolev
59c2056226
Merge branch 'master' into sjg/multigrid-mult-rhs
2022-12-11 16:03:22 -08:00
Tzanio Kolev
05ed8c68cc
Merge branch 'master' into cmake-strumpack-metis-fix
2022-12-11 16:03:10 -08:00
Tzanio Kolev
6f61468a93
Merge branch 'master' into l2-integral-support
2022-12-11 16:03:00 -08:00
Tzanio Kolev
881534e227
Merge pull request #3322 from mfem/tmop_exp_limiter
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Exponential limiter integration [tmop_exp_limiter]
2022-12-11 16:02:15 -08:00
Tzanio Kolev
3155b5c7dc
Merge pull request #3347 from mfem/fix-hip-compile
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Fix hip compilation
2022-12-11 16:00:48 -08:00
Tzanio Kolev
a2f529621c
Merge pull request #3132 from mfem/ncmesh-pyramid-dev
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NCMesh pyramid dev
2022-12-11 15:19:02 -08:00
Tzanio Kolev
3578622e42
Merge branch 'master' into ncmesh-pyramid-dev
2022-12-11 15:18:03 -08:00
Tzanio Kolev
371e625677
Updated CHANGELOG, other minor edits
2022-12-11 15:13:42 -08:00
Veselin Dobrev
9a7f764ac7
In the CMake build system, fixed broken build when NetCDF is
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enabled and left some notes about future improvements.
2022-12-09 16:25:32 -08:00
Stowell, Mark L
58021339c0
Merge remote-tracking branch 'origin/master' into l2-integral-support
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# Conflicts:
# fem/gridfunc.cpp
2022-12-09 13:20:58 -08:00
Veselin Dobrev
640b86a094
Remove CMake version checks for versions older than the new
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minimum required version, 3.8.
In defaults.mk, use C++14 when STRUMPACK is enabled, similar to CMake.
2022-12-09 10:52:45 -08:00
Stowell, Mark L
6ace118601
Merge remote-tracking branch 'origin/master' into sjg/multigrid-mult-rhs
2022-12-09 10:37:37 -08:00
Dylan Copeland
bde55a3686
Merge branch 'master' into nurbs-attr
2022-12-09 09:59:43 -08:00
Tzanio Kolev
449b3e3393
Merge branch 'master' into cmake-strumpack-metis-fix
2022-12-09 09:04:35 -08:00
Tzanio Kolev
7d2eddd603
Merge branch 'master' into fix-hip-compile
2022-12-09 09:00:45 -08:00
Tzanio Kolev
975c0f2eab
Merge pull request #3343 from mfem/geom-factors-dox-update
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Document that Get(Face)GeometricFactors might return stale data
2022-12-09 08:57:55 -08:00
Tzanio Kolev
a3aa202f36
Merge pull request #3194 from mfem/vector-remove-implicit-conversion
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Deprecate implicit conversion from `Vector` to `double *`
2022-12-09 08:54:29 -08:00
Tzanio Kolev
cc8e2de479
Merge branch 'master' into cmake-strumpack-metis-fix
2022-12-09 08:45:50 -08:00
Sebastian Grimberg
e2e1d6428e
Make suggested changes for CMake builds: Bumps CMake version to 3.8 for correct CMAKE_CXX_STANDARD handling, corrects use of OpenMP flags for test builds.
2022-12-08 14:21:47 -08:00
Stowell, Mark L
44b3ed9b21
Merge remote-tracking branch 'origin/master' into bugfix/submesh-bdr-l2
2022-12-08 12:22:44 -08:00
Veselin Dobrev
7f7dc51c70
Merge branch 'master' into l2-integral-support
2022-12-08 10:29:59 -08:00
Stowell, Mark L
81e38c3f54
Removing soon to be deprecated casts
2022-12-08 09:42:33 -08:00
Veselin Dobrev
7799d447a3
Merge branch 'master' into artv3/raja-launch-updates
2022-12-08 06:17:36 -08:00
Veselin Dobrev
892352e9cd
In FindRAJA.cmake, remove a workaround that is no longer needed
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with RAJA v2022.10.3.
In the CMake build system, disable the 'hooke' miniapp when
HIP is enabled to avoid AMD HIP compiler crash (already done
in the GNU make build system).
2022-12-08 06:07:32 -08:00
Vladimir Z Tomov
6e7429a889
minor
2022-12-07 23:13:17 -08:00
Vladimir Z Tomov
949db3ccdb
Corresponding edits for PMesh.
2022-12-07 23:09:31 -08:00
Vladimir Z Tomov
cb1cf8dfe7
Improved / unified documentation for Mesh::Get*Transformation.
2022-12-07 23:04:09 -08:00
Tzanio Kolev
4cca442814
Merge branch 'master' into FaceQuadratureSpace-bug-fix
2022-12-07 15:08:24 -08:00
Tzanio Kolev
74700f5bc8
Merge branch 'master' into vector-remove-implicit-conversion
2022-12-07 15:06:58 -08:00
Tzanio Kolev
5b173dc044
Merge pull request #3352 from mfem/vector-random-seed-removal
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Removing global random seed in vector
2022-12-07 15:05:49 -08:00
Arturo Vargas
941f930bae
Merge branch 'master' into artv3/raja-launch-updates
2022-12-07 13:21:40 -08:00
Stowell, Mark L
b04ce9e375
Removing GetRangeType etc from derived FE collection classes
2022-12-07 11:24:31 -08:00
Stowell, Mark L
b43cf3b1fe
Implementing GetRangeType etc in FiniteElementCollection base class
2022-12-07 11:24:01 -08:00
Stowell, Mark L
0b773a9f23
Adding FiniteElementCollection::FiniteElementForDim
2022-12-07 10:31:15 -08:00
Vladimir Z Tomov
ae2f95d946
style.
2022-12-07 09:35:25 -08:00
Vladimir Z Tomov
4a4e135c1a
Merge branch 'master' into tmop_exp_limiter
2022-12-07 09:28:50 -08:00
Sebastian Grimberg
496b0750ca
Fix clang compiler warnings
2022-12-07 00:12:41 -08:00
Sebastian Grimberg
e11b0cd409
Merge branch 'master' into sjg/dof-to-quad-dev
2022-12-06 20:59:55 -08:00
Sebastian Grimberg
1f6b128837
Merge branch 'master' into sjg/multigrid-mult-rhs
2022-12-06 20:59:48 -08:00
Tzanio Kolev
a6c5b3b1e8
Merge branch 'master' into FaceQuadratureSpace-bug-fix
2022-12-06 17:41:52 -08:00
Veselin Dobrev
575547df7d
Merge branch 'master' into cmake-strumpack-metis-fix
2022-12-06 17:04:23 -08:00
Veselin Dobrev
40b577d192
Merge pull request #3294 from mfem/doxygen-subdirs
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Include several subdirectories in Doxygen docs
2022-12-06 16:40:28 -08:00
Will Pazner
41a2ada156
Bug fix
2022-12-06 14:56:11 -08:00
Will Pazner
1168f30492
Merge pull request #3355 from mfem/deprecate-get-face-geometry-type
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Deprecate GetFaceGeometryType and GetFaceBaseGeometry
2022-12-06 14:06:27 -08:00
Will Pazner
50c238b1cf
Add Doxygen comments to Mesh::GetFaceGeometry
2022-12-06 14:05:38 -08:00
Will Pazner
353d9b646e
Move Mesh::GetFaceGeometryType implementation to header
2022-12-06 12:41:43 -08:00
Will Pazner
26073f789d
Deprecate GetFaceGeometryType and GetFaceBaseGeometry
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Now both of these functions call GetFaceGeometry.
GetFaceGeometry has been updated to handle ghost faces.
2022-12-06 12:21:12 -08:00
Tzanio Kolev
c39459387a
Merge branch 'master' into FaceQuadratureSpace-bug-fix
2022-12-06 12:03:20 -08:00
Will Pazner
dcd8b0907f
Merge remote-tracking branch 'origin/master' into vector-remove-implicit-conversion
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# Conflicts:
# CHANGELOG
# fem/fe/fe_nd.cpp
# fem/fe/fe_rt.cpp
2022-12-06 11:54:32 -08:00
Will Pazner
9e1c1ebc29
Merge pull request #3333 from mfem/vector-remove-implicit-conversion-tweaks
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Various simplifications, tweaks, and fixes for PR #3194
2022-12-06 11:51:40 -08:00
Tzanio Kolev
615d13658e
Merge branch 'master' into doxygen-subdirs
2022-12-06 11:32:02 -08:00
Tzanio Kolev
5ed071c026
Merge branch 'master' into geom-factors-dox-update
2022-12-06 11:24:07 -08:00
Tzanio Kolev
db03d1e390
Merge branch 'master' into vector-random-seed-removal
2022-12-06 11:23:43 -08:00
Tzanio Kolev
7a24255cdb
Merge branch 'master' into ncmesh-pyramid-dev
2022-12-06 10:28:44 -08:00
Tzanio Kolev
f23b8135f5
Merge pull request #3287 from mfem/superlu-strumpack-cuda-fix
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SuperLU_DIST and STRUMPACK with HYPRE+CUDA
2022-12-06 10:25:25 -08:00
Veselin Dobrev
84512a4733
[SQUASH MERGE] Fix GitHub CI failures with the new ubuntu-latest ( #3351 )
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* Disable the test 'ubuntu-latest-cmake-opt-par-int32' which is
failing with 'ubuntu-latest' == 'ubuntu-22.04' to see if the
other tests pass.
* GH actions: update some action versions to fix warnings plus
some other tweaks
* GH actions: update more action versions to fix warnings
* GH actions: testing
* GH actions: testing
* GH actions: testing CMake fix
* GH actions: testing Doxygen fix
2022-12-06 10:20:12 -08:00
Tzanio Kolev
0c8a5d6530
Merge pull request #3353 from mfem/ceed-fix
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Use renamed functions when libCEED version >= 0.10.2
2022-12-06 10:19:17 -08:00
Michael C Tyler Stees
c1a78025ff
Added missing parenthesis in limiting function and second derivative.
2022-12-06 09:06:18 -08:00
Veselin Dobrev
0eedd780f2
Merge branch 'master' into superlu-strumpack-cuda-fix
2022-12-05 15:24:12 -08:00
Aaron Fisher
21b7787aef
Merge branch 'master' into ncmesh-pyramid-dev
2022-12-05 14:59:41 -08:00
Veselin Dobrev
44380ab02a
Add calls to Mesh::NodesUpdated in both versions of Mesh::Transform
2022-12-05 02:30:45 -08:00
Veselin Dobrev and samuelpmishLLNL
8cdd2bb0c8
Doxygen tweak in Mesh::NodesUpdated
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Co-authored-by: samuelpmishLLNL <61714427+samuelpmishLLNL@users.noreply.github.com >
2022-12-05 02:29:51 -08:00
Vladimir Z Tomov
8b5aa791e4
Added unit test for the expo limiting (failing, Mike will fix it).
2022-12-04 17:55:31 -08:00
Tzanio Kolev
70afda9c06
Merge pull request #3321 from mfem/rm-mesquite
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Removed Mesquite support
2022-12-04 14:55:01 -08:00
Aaron Fisher
8bc44a8087
make style
2022-12-02 14:54:17 -08:00
Aaron Fisher
ae93ec6887
Removed non-working anisotropic refinement of pyramids code.
2022-12-02 14:46:46 -08:00
Will Pazner
caf638a3d3
Use renamed functions when libCEED version >= 0.10.2
2022-12-02 12:47:09 -08:00
Socratis Petrides
aaec27a9ea
removing global random seed in vector
2022-12-02 11:19:57 -08:00
Tzanio Kolev and samuelpmishLLNL
83dbeae7ab
Update mesh/mesh.hpp
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Co-authored-by: samuelpmishLLNL <61714427+samuelpmishLLNL@users.noreply.github.com >
2022-12-01 11:23:42 -08:00
Tzanio Kolev
3cd881e8b6
Merge branch 'master' into rm-mesquite
2022-12-01 11:20:50 -08:00
Veselin Dobrev
5b9dd0b42f
Update doxygen docs based on reviewer feedback
2022-11-30 22:46:06 -08:00
Veselin Dobrev and @sebastiangrimberg
6947b3a639
In CMakeLists.txt, when removing duplicates from TPL_LIBRARIES,
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keep the last occurrence instead of the first.
In the CMake function mfem_find_package, make sure the C++ standard
is used when calling check_cxx_source_compiles.
Fix a warning in STRUMPACKSolver::Mult.
Co-authored-by: @sebastiangrimberg
2022-11-30 18:34:12 -08:00
Stowell, Mark L
41a7679f19
Merge remote-tracking branch 'origin/master' into l2-integral-support
2022-11-30 10:46:25 -08:00
Stowell, Mark L
2b700c87d9
Improving doxygen comments
2022-11-30 10:33:45 -08:00
Stowell, Mark L
0d2f94be20
Exposing FiniteElement characteristics through FE_Collection
2022-11-30 10:18:19 -08:00
Michael C Tyler Stees
9c19c54114
Remove extra new line
2022-11-30 09:07:51 -08:00
Tzanio Kolev
8591e38a71
Merge pull request #3313 from mfem/sjg/dof-trans-cleanup
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Fix minor copy-paste errors in DofTransformation
2022-11-30 08:02:32 -08:00
Tzanio Kolev
acd46692a0
Merge pull request #3329 from mfem/bugfix/visit-dc-rfind
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Bug fix for VisItDataCollection name parsing
2022-11-30 08:02:18 -08:00
Tzanio Kolev
ca6588da7d
Merge pull request #3305 from mfem/cmake-cuda-rdc-fix
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Fix for CMake linking with TPLs built with CUDA relocatable device code (RDC)
2022-11-30 08:01:37 -08:00
Tzanio Kolev
c60295e9c0
Merge pull request #3306 from mfem/cray-hip-gmake-support
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Fix the building of the unit tests when using Cray HIP compilers
2022-11-30 08:01:04 -08:00
Stowell, Mark L
a0bd50266c
Adding support for map type INTEGRAL in GridFunction::GetNodalValues
2022-11-29 16:28:02 -08:00
Robert W. Anderson
5f74c1fa31
remove obsolete comment
2022-11-29 11:09:49 -08:00
Robert W. Anderson
5bb90b84e3
remove temp interactive testing files
2022-11-29 10:58:13 -08:00
Veselin Dobrev
c2133437dd
In CMakeLists.txt, move STRUMPACK before METIS in the list MFEM_TPLS
2022-11-28 21:13:55 -08:00
Tom Stitt
0c42f3751d
fixes "no known conversion from 'int **' to 'void **'" compilation error during hip compilation
2022-11-28 16:49:22 -08:00
Tzanio Kolev
7830ee7877
Merge branch 'master' into bugfix/visit-dc-rfind
2022-11-28 14:32:19 -08:00
Tzanio Kolev
2196e61f4e
Merge branch 'master' into rm-mesquite
2022-11-27 18:06:24 -08:00
Tzanio Kolev
42e979ebb6
Merge pull request #3337 from mfem/GradToCurl2D-fix
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GradToCurl fix for vector and scalar valued curl.
2022-11-27 18:03:39 -08:00
Tzanio Kolev
5e0ffd933b
Merge pull request #3268 from mfem/add-dist-solver
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Fast distance solver
2022-11-27 18:02:56 -08:00
Tzanio Kolev
2d9850c642
Merge pull request #3278 from mfem/sjg/gslib-fix
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Resolve compiler warnings in gslib.cpp
2022-11-27 18:01:51 -08:00
Tzanio Kolev
1301ed24fc
Merge pull request #3290 from mfem/hipsparse-include-fix
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Fix a warning with HIP >= 5.2.0
2022-11-27 18:01:21 -08:00
Veselin Dobrev
9b29c316e3
Update the doxygen docs of Mesh::GetGeometricFactors and
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Mesh::GetFaceGeometricFactors to explicitly state that the
returned pointer to internal object may be invalidated by
some mesh operations.
Other small doxygen tweaks.
2022-11-26 19:46:03 -08:00
Vladimir Z Tomov
cbdf014edf
Reviewer comments.
2022-11-22 23:38:51 -08:00
Stowell, Mark L
7a277b6606
CHANGELOG entry
2022-11-22 14:03:04 -08:00
Stowell, Mark L
8976fe0284
Marking VisItDataCollection methods with "override" where appropriate
2022-11-22 13:49:08 -08:00
Arturo Vargas
41faa5428f
add CAMP_LIB flag
2022-11-22 09:30:52 -08:00
Tzanio Kolev
1e17003af3
Merge pull request #3315 from mfem/fix-vismesh
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Fixed `common::VisualizeMesh`
2022-11-22 08:57:46 -08:00
Socratis Petrides
818041228c
fix MixedCurlIntegrator
2022-11-21 20:34:13 -08:00
Socratis Petrides
cb5d670e01
revert changes in GradToCurl. Add new method for Vector-valued GradToCurl in 2D
2022-11-21 17:04:13 -08:00
Veselin Dobrev
d7b1fb4880
CMake CUDA tweak
2022-11-20 22:14:28 -08:00
Veselin Dobrev
5578279386
In defaults.cmake, remove lines that are no longer needed
2022-11-20 20:20:27 -08:00
Veselin Dobrev
0a133cc3fa
Update FindRAJA.cmake to use the exported RAJA CMake configs
2022-11-20 19:29:39 -08:00
Stowell, Mark L
8ef4bef094
Adding SubMesh support for discontinuous fields with vdim > 1
2022-11-20 14:12:58 -08:00
Veselin Dobrev
972a4c227e
Various simplifications, tweaks, and fixes
2022-11-19 14:18:43 -08:00
Stowell, Mark L
6730ffeb6f
Setting pad_digits_rank even in serial
2022-11-18 09:39:31 -08:00
Stowell, Mark L
e33dd78845
Fixing pad digits calls in unit test
2022-11-17 15:58:41 -08:00
Stowell, Mark L
7b5b871eea
Adding pad digits options to other DataCollection related tools
2022-11-17 15:25:47 -08:00
Stowell, Mark L
d7b2c4a7b2
Declaring SetPadDigits* as virtual
2022-11-17 15:25:09 -08:00
Stowell, Mark L
77a745bd28
Modifying get-values to support arbitrary cycle number padding
2022-11-17 10:54:20 -08:00
Arturo Vargas
44f1c544fb
Will need RAJA >= 2022.10.3
2022-11-17 10:20:53 -08:00
Arturo Vargas
67d95f4032
add -lcamp
2022-11-17 10:19:43 -08:00
Will Pazner
3027566eb5
Merge pull request #3327 from mfem/vector-distance-hostread
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Add const Vector& overload for Distance
2022-11-16 10:45:47 -08:00
Stowell, Mark L
a58aafb743
Search string from the end to extract data collection name
2022-11-16 10:35:28 -08:00
Tzanio Kolev
b09cc38df9
Merge pull request #3288 from mfem/hiop-nvcc-warnings-fix
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Fix nvcc warnings when HiOp integration is enabled
2022-11-16 10:27:42 -08:00
Will Pazner
facf28e24c
Add const Vector& overload for Distance
2022-11-16 09:52:23 -08:00
Vladimir Z Tomov
5913021d50
Removed dummy GridFunctions.
2022-11-15 23:59:41 -08:00
Tzanio Kolev
3fca8798f6
Merge pull request #3304 from mfem/fix-clang-warnings
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Fix some clang 14 warnings
2022-11-15 16:20:41 -08:00
Tzanio Kolev
6a71b32f04
Merge pull request #3317 from mfem/hip-miniapps-build-fix
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Fix two issues affecting the miniapps building with HIP enabled
2022-11-15 16:19:57 -08:00
Dylan Copeland
11abc26e00
Setting patch_to_el after setting el_to_patch.
2022-11-14 21:55:22 -08:00
Dylan Copeland
707befe264
Documenting some new functions.
2022-11-14 21:38:39 -08:00
Will Pazner
8ee9011b29
Merge pull request #3172 from mfem/yohann/sort+test
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Add sorting of sparse matrix when assembled on device.
2022-11-14 09:37:30 -08:00
Michael C Tyler Stees
86530f1d5b
Adding exponential limiter option in fem/tmop.hpp and partial assembly support.
2022-11-14 07:44:37 -08:00
Will Pazner
b3a57feaae
Use Device::IsEnabled and add explanation in ex1 and ex1p
2022-11-13 16:02:32 -08:00
Will Pazner
fee80f9280
Revise comment for BilinearForm::EnableSparseMatrixSorting
2022-11-13 16:02:01 -08:00
Tzanio Kolev
49c8ff3a3b
Small edit in CHANGELOG
2022-11-13 12:00:26 -08:00
Vladimir Z Tomov
2c7ecb75e2
Removed Mesquite.
2022-11-10 19:51:50 -08:00
Arturo Vargas
1d41202805
Bug fix for non-conforming meshes.
2022-11-10 17:34:10 -08:00
Robert W. Anderson
7797741733
make style
2022-11-10 09:59:03 -08:00
Veselin Dobrev
19105ba702
Fix two issues affecting the miniapps building with HIP enabled:
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- the 'hooke' miniapp crashes the AMD HIP compiler, so for now
we disabled it when building with HIP
- the building of the shared 'mfem-common' library was broken since
the XLINKER make variable was left undefined with HIP enabled.
2022-11-10 00:15:09 -08:00
Robert W. Anderson
1030d3740f
deactivate parallel stress test until exact projection is ready for positive basis
2022-11-09 21:40:47 -08:00
Robert W. Anderson
700a4aca47
revert projection to monotone version
2022-11-09 21:39:55 -08:00
Robert W. Anderson
1504729937
Merge branch 'master' into bugfix/rwa/coarsen-L2-proj
2022-11-09 19:23:44 -08:00
Dylan Copeland
ae50320b05
Editing a comment.
2022-11-09 12:18:33 -08:00
Dylan Copeland
2366754d19
Adding functions to set and get attributes on NURBS patches.
2022-11-09 12:06:19 -08:00
Tzanio Kolev
37b61aab9d
Merge pull request #3303 from mfem/disconnected-mesh-fix
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Fix partitioning error for disconnected meshes with METIS 5
2022-11-09 07:45:03 -08:00
Vladimir Z Tomov
725c2db36a
Fixed common::VisualizeMesh().
2022-11-08 23:29:49 -08:00
Sebastian Grimberg
3ac57bb15a
Add missing tests for CMake builds
2022-11-08 21:27:04 -08:00
Sebastian Grimberg
5e2f3f9490
Refactor GetDofToQuad to support H(curl) and H(div) for non-tensor elements
2022-11-08 21:26:11 -08:00
Sebastian Grimberg
aed2054149
Add some override specifiers for compile-time checking
2022-11-08 12:45:17 -08:00
Sebastian Grimberg
24ffcca5cd
Merge branch 'master' into sjg/multigrid-mult-rhs
2022-11-08 12:44:50 -08:00
Sebastian Grimberg
646d73b980
Fix minor copy-paste errors in DofTransformation
2022-11-08 12:35:25 -08:00
Tzanio Kolev
55ccded864
Merge pull request #3307 from mfem/petsc-warning-fix
...
Fix PETSc 3.18.0 deprecation warning about MATTRANSPOSEMAT
2022-11-08 10:21:32 -08:00
Tzanio Kolev
4227521a52
Merge pull request #3309 from mfem/stefanozampini/fix-nonzeroguess-ksp
...
PetscLinearSolver: respect command line option for nonzero initial guess
2022-11-08 10:21:09 -08:00
Tzanio Kolev
b9d166a4a4
Merge pull request #3302 from mfem/fix-doxygen-dgdiffusion
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Fix Doxygen formatting for DGDiffusionIntegrator
2022-11-08 10:20:18 -08:00
Will Pazner
40c49ed992
Merge pull request #3297 from mfem/artv3/quadspacebase-init
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Initalize order in quadrature space base class
2022-11-07 20:45:55 -08:00
Yohann Dudouit
6e70e2883b
Set diagonal policy to DIAG_ONE when using Full assembly.
2022-11-07 12:32:53 -08:00
Yohann Dudouit
affa9185bd
Set the diagonal policy to DIAG_ONE in ex1 and ex1p.
2022-11-07 11:17:26 -08:00
Stefano Zampini
c5c9a002c0
PetscLinearSolver: respect command line option for nonzero initial guess
2022-11-07 10:40:39 +03:00
Tzanio Kolev
0043dc833e
Merge branch 'doxygen-subdirs' of github.com:mfem/mfem into doxygen-subdirs
2022-11-06 12:42:02 -08:00
Tzanio Kolev
14c43e1f98
Fix Doxygen comments
2022-11-06 12:40:56 -08:00
Veselin Dobrev
319d383af9
Fix PETSc 3.18.0 deprecation warning about MATTRANSPOSEMAT
2022-11-05 19:49:20 -07:00
Will Pazner
059cb2ce80
Remove unused variable in ParNCMesh::MemoryUsage
2022-11-05 13:47:19 -07:00
Will Pazner
aa40b0b819
Suppress unused variable warning
2022-11-05 13:46:53 -07:00
Will Pazner
d264a57850
Remove unused variable in Mesh::PrintVTU
2022-11-05 13:39:06 -07:00
Will Pazner
24825a5d26
Replace sprintf with snprintf
2022-11-05 13:38:42 -07:00
Veselin Dobrev
18e02de412
When partitioning a disconnected mesh with METIS 5, disable
...
the option for contiguous partitions which generates an error.
2022-11-04 23:45:47 -07:00
Will Pazner
a1f2a79c3a
Fix Doxygen formatting for DGDiffusionIntegrator
2022-11-04 12:18:52 -07:00
Will Pazner
a6830a367a
Merge remote-tracking branch 'origin/master' into yohann/sort+test
2022-11-04 09:55:29 -07:00
Veselin Dobrev
7176ad1ddd
Add MFEM_USE_SUPERLU5 to the list of variables that will be
...
written to config.hpp and config.mk.
Also print MFEM_USE_SUPERLU5 when running 'make info'.
2022-11-04 01:40:32 -07:00
Julian Andrej
cdc9408d27
more doxygen
2022-11-03 17:29:28 -07:00
Julian Andrej
322aa742d2
changed doxygen comment
2022-11-03 17:04:50 -07:00
Arturo Vargas
092180b3f7
Update qspace.cpp
2022-11-02 21:19:12 -07:00
Veselin Dobrev
65d28896cb
Merge pull request #3281 from mfem/bugfix/qfunc_inline
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Bug fix related to qfunction.cpp
2022-11-02 21:03:04 -07:00
Arturo Vargas
1fb13fe1a4
initalize order and size in quadrature space base
2022-11-02 16:39:14 -07:00
Veselin Dobrev
716d97e535
Ensure MUMPS and MKL CPardiso can use hypre matrices in GPU
...
memory by moving them temporarily to CPU memory.
2022-11-01 20:33:17 -07:00
Tzanio Kolev
9cd66faee6
Include several subdirectories in Doxygen docs
2022-11-01 19:10:28 -07:00
Arturo Vargas
eec6f95561
make note of raja change in change log
2022-11-01 15:22:36 -07:00
Arturo Vargas
23fcd110f5
updates for raja launch
2022-11-01 15:21:30 -07:00
Veselin Dobrev
f3c390fc1e
To support building with HIP using the Cray compilers (which
...
need the -xhip flag) move the $(MFEM_FLAGS) argument (that
contains the -xhip flag) before the file(s) to be compiled.
2022-11-01 13:07:27 -07:00
Vladimir Z Tomov
f4f6ab0f56
Merge branch 'master' into parGF-grad
2022-10-31 16:04:05 -07:00
Vladimir Z Tomov
2edddc5f9a
Wrong #endif placement.
2022-10-31 16:01:36 -07:00
Vladimir Z Tomov
b0048a2ccb
Merge branch 'master' into add-dist-solver
2022-10-31 14:44:11 -07:00
Vladimir Z Tomov
90ef7e72ef
Compilation error in the diffusion example due to the interface change.
2022-10-31 14:42:38 -07:00
Vladimir Z Tomov
9213f43286
Fixed failing tests.
2022-10-31 11:14:35 -07:00
Veselin Dobrev
7940fbea51
Add closing #endif forgotten in the previous commit
2022-10-30 16:57:56 -07:00
Veselin Dobrev
6c0d431f90
Fix a warning with HIP >= 5.2.0 to include <hipsparse/hipsparse.h>
...
instead of just <hisparse.h>
2022-10-30 16:44:11 -07:00
Veselin Dobrev
a7501a08d6
Fix style
2022-10-29 21:01:34 -07:00
Veselin Dobrev
d7e03640d9
Fix nvcc warnings when HiOp integration is enabled
2022-10-29 12:24:36 -07:00
Veselin Dobrev
87596eaa38
Ensure SuperLU_DIST and STRUMPACK can use hypre matrices in GPU
...
memory by moving them temporarily to CPU memory.
2022-10-29 08:22:30 -07:00
Vladimir Z Tomov
1759f79026
Bug in metric 301. Fix check-tmop-metric when Hessian is exact.
2022-10-28 19:05:18 -07:00
Robert Carson
6e9f62ca86
bug fix qfunction inline funcs in wrong file
2022-10-28 14:31:02 -04:00
Tzanio Kolev
2eb2061fb0
Merge pull request #3270 from mfem/mondrian-miniapp-fix
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Fix bug in mondrian miniapp
2022-10-28 09:23:54 -07:00
Veselin Dobrev
297ee682d4
Fix a linking issue in the CMake build system when using newer
...
CMake versions (e.g. 3.18 and later) and linking with CUDA
libraries compiled with relocatable device code (rdc). Some
older versions of hypre were built with CUDA rdc (e.g. 2.22.x)
and the build with CMake 3.18 and hypre-2.22.x was failing.
This fix will probably be needed if we are linking with any
other TPLs built with CUDA rdc.
2022-10-27 15:17:00 -07:00
Sebastian Grimberg
b1dec1eda0
Resolve compiler warnings in gslib.cpp
2022-10-27 13:16:50 -07:00
Hugh Carson
5be88369ce
Add default constructor to ParFiniteElementSpaceHierarchy, and use default for FiniteElementSpaceHierarchy
2022-10-27 10:38:56 -04:00
Biswapriyo Nath
3afef10951
Fix DLL install directory in mingw
...
This installs DLL in 'bin' directory instead of 'lib' by default.
In mingw environment, all DLLs and EXEs are installed in 'bin'
and static & import libraries are installed in 'lib' directory.
This does not affect other environment because the 'RUNTIME'
and 'LIBRARY' targets are automatically set by cmake. See
https://cmake.org/cmake/help/latest/command/install.html
2022-10-26 08:05:33 +05:30
Sebastian Grimberg
ab4bd64a5e
Fix bug in mondrian miniapp
2022-10-25 16:29:49 -07:00
Vladimir Z Tomov
ea9c2d2b8f
style.
2022-10-24 19:05:11 -07:00
Vladimir Z Tomov
b1383e0f80
Use OrthoSolver.
2022-10-24 18:19:11 -07:00
Vladimir Z Tomov
b0573f4cec
Updated to use IterativeSolver::PrintLevel.
2022-10-24 18:05:33 -07:00
Sebastian Grimberg
93536a8492
Merge branch 'master' into sjg/multigrid-mult-rhs
2022-10-24 17:53:03 -07:00
Vladimir Z Tomov
021532cebf
1d sample run, better eps value for gradient calculations.
2022-10-24 16:37:59 -07:00
Tzanio Kolev
d84884d13c
Merge pull request #3266 from mfem/new-dev-version-4.5.1
...
Update version numbers to 4.5.1 -- a new development version
2022-10-24 09:41:30 -07:00
Veselin Dobrev
6328e8b38c
Update version numbers to 4.5.1 -- a new development version
2022-10-24 07:06:54 -07:00
Vladimir Z Tomov
93d87c5a90
Added a simple normalization solver, error computations.
2022-10-21 17:08:56 -07:00
Yohann Dudouit
612a94aef7
Add EnableSparseMatrixSorting in ex1 and ex1p.
2022-10-20 09:47:05 -07:00
Vladimir Z Tomov
ef6cadeaf2
style
2022-10-13 17:27:31 -07:00
Vladimir Z Tomov
d8a9ce16cc
cmakelist
2022-10-13 17:18:04 -07:00
Vladimir Z Tomov
2c4a5300d1
changelog.
2022-10-13 17:15:45 -07:00
Vladimir Z Tomov
9db0863ba9
GetGradients and GetVectorGraient on share faces.
2022-10-13 17:12:17 -07:00
Vladimir Z Tomov
2af7fe401e
Unit test for GetGradient on shared faces.
2022-10-12 10:56:12 -07:00
blaz
5fd3861229
Added element marking
2022-09-29 12:41:54 -07:00
Sebastian Grimberg
35b1d71507
Merge branch 'master' into sjg/multigrid-mult-rhs
2022-09-29 12:34:46 -04:00
Aaron Fisher
bf287d6ae5
Fixed a comment.
2022-09-20 08:12:53 -07:00
Aaron Fisher
462842eea9
Merge branch 'master' into ncmesh-pyramid-dev
2022-09-20 08:11:01 -07:00
Will Pazner
86e9298c5a
Fix deprecation warnings in ParTransferMap
2022-09-19 12:21:07 -07:00
Will Pazner
f0d7789836
Merge remote-tracking branch 'origin/master' into vector-remove-implicit-conversion
2022-09-19 12:02:56 -07:00
Will Pazner
883120f0e9
Fix deprecation warning when LAPACK is enabled
2022-09-19 11:59:36 -07:00
Yohann
9ac1f3eec6
Rename SortSparseMatrix to EnableSparseMatrixSorting.
...
- Add a boolean parameter to enable/disable
- Also sort on CPU
2022-09-16 15:27:59 +02:00
Yohann
7c9710b559
Use SortSparseMatrix in test_fa_determinism.
2022-09-12 18:24:58 +02:00
Yohann
409e743bc4
Change sparse matrix sorting interface.
...
- Rename method to `SortSparseMatrix`.
- Default behavior is to not sort the sparse matrices.
- Improve documentation.
2022-09-12 15:57:36 +02:00
Yohann
ccd01f2c58
Set ntrials to 2 in test_fa_determinism.
2022-09-12 15:49:25 +02:00
Stowell, Mark L
dd8a19d180
Merge remote-tracking branch 'origin/master' into mesh-ptr-doc-dev
2022-09-09 12:55:51 -07:00
Will Pazner
bfc871481f
Remove implicit Vector conversions in tests, miniapps, examples
2022-09-06 13:20:56 -07:00
Will Pazner
5a455dd141
Deprecate Vector implicit conversion to double*
2022-09-06 13:05:38 -07:00
Yohann Dudouit
c4f5897b20
Use Cu/Hip allocations to avoid int overflow with Memory interface.
2022-09-01 10:29:36 -07:00
Yohann Dudouit
03ce7c1d4a
Set ntrials to 1.
2022-08-31 18:00:29 -07:00
Yohann Dudouit
7404fbbaf1
Replace DEVICE_MASK with ~CPU_MASK.
2022-08-31 17:59:16 -07:00
Yohann Dudouit
5a18775378
Merge branch 'yohann/sort+test' of https://github.com/mfem/mfem into yohann/sort+test
2022-08-31 17:21:07 -07:00
Yohann Dudouit
f1a2fc2295
Factor out isSorted.
2022-08-31 17:21:03 -07:00
Yohann and Will Pazner
cff4473374
Update fem/bilinearform.hpp
...
Co-authored-by: Will Pazner <11493037+pazner@users.noreply.github.com >
2022-08-31 17:19:08 -07:00
Yohann Dudouit
dabae076c5
Reactivate full assembly sample runs in ex1 and ex1p.
2022-08-25 13:36:46 -07:00
Yohann Dudouit
a49b8a5a63
Merge branch 'master' into yohann/sort+test
2022-08-25 13:35:30 -07:00
Yohann Dudouit
3a62136a70
Remove SortRows from HypreParMatrix.
2022-08-25 13:25:20 -07:00
Yohann Dudouit
1fe908294d
Add method to disable sparse matrix sorting on device.
2022-08-25 13:17:54 -07:00
Yohann Dudouit
96f8aa4a89
Fix sorting of sparse matrices with hip.
2022-08-25 10:07:03 -07:00
Will Pazner
44663ed239
Clean up determinism test
2022-08-24 10:00:45 -07:00
Will Pazner
231ec7961d
Add determinism test
2022-08-24 10:00:44 -07:00
Yohann Dudouit
d7b5d07cce
Create temporary cusparseMatDescr_t for sorting.
2022-08-23 17:37:46 -07:00
Yohann Dudouit
8029a5ace0
Use Arrays instead of Memory objects.
2022-08-23 17:37:14 -07:00
Yohann Dudouit
78ac894623
Use class methods to read and write.
2022-08-23 17:36:44 -07:00
Yohann Dudouit
6cd171ae05
Use Capacity instead of Size.
2022-08-23 17:33:30 -07:00
Yohann Dudouit
9f035181c1
Update SortColumnIndices to be device aware.
2022-08-23 15:27:28 -07:00
Aaron Fisher
15680b2052
make style
2022-08-11 12:32:20 -07:00
Aaron Fisher
64737fad46
Merge branch 'ncmesh-pyramid-dev' of github.com:mfem/mfem into ncmesh-pyramid-dev
2022-08-11 10:19:29 -07:00
Aaron Fisher
dd0b13ec5a
Fixed the deref table after I reshuffled the elements.
2022-08-11 10:18:55 -07:00
Aaron Fisher
1b4480552c
make style
2022-08-10 16:36:00 -07:00
Aaron Fisher
0e24a2840a
Reordered the refined pyramid elements to put the tets at the end.
2022-08-10 16:33:22 -07:00
Aaron Fisher
3add57b2f1
Merge branch 'ncmesh-pyramid-dev' of github.com:mfem/mfem into ncmesh-pyramid-dev
2022-08-10 14:44:38 -07:00
Aaron Fisher
e8df0436ef
Fixed problems that unit testing uncovered.
2022-08-10 14:40:06 -07:00
Sebastian Grimberg
ef7806d1a0
Merge branch 'master' into sjg/multigrid-mult-rhs
2022-08-08 13:11:03 -07:00
Aaron Fisher
35afe5a468
make style
2022-08-05 19:36:09 -07:00
Aaron Fisher
c8adac90f5
Added a unit test to make sure mesh volume is preserved on reference elements.
2022-08-05 16:27:30 -07:00
Aaron Fisher
b3eaee247c
Added pyramid support to ncmesh.
2022-08-05 15:44:25 -07:00
Stowell, Mark L
9f03e9f682
Extending documentation for pmesh nurbs and element
2022-08-04 14:59:45 -07:00
Stowell, Mark L
3fadacb72b
Merge remote-tracking branch 'origin/master' into mesh-ptr-doc-dev
2022-08-03 17:12:04 -07:00
Stowell, Mark L
94ae0d9c5e
Expanding comments in mesh.hpp
2022-08-03 17:09:33 -07:00
Sebastian Grimberg
7444aa5070
Merge branch 'master' into sjg/multigrid-mult-rhs
2022-08-01 08:59:34 -07:00
Sebastian Grimberg
b15b188c44
Update const for Mult with multiple RHS
2022-08-01 08:59:06 -07:00
Sebastian Grimberg
98ca552b74
Merge branch 'master' into sjg/multigrid-mult-rhs
2022-08-01 08:39:04 -07:00
Tzanio Kolev
5299a2fed1
Merge branch 'master' into bugfix/rwa/coarsen-L2-proj
2022-07-27 08:39:10 -07:00
Stowell, Mark L
8709602daa
Small documentation changes to Mesh
2022-07-26 14:23:49 -07:00
Yohann Dudouit
c39b1a905b
Call sorting on "local" matrices.
2022-07-26 12:06:18 -07:00
Yohann Dudouit
fa62bc0bd1
Use hypre_CSRMatrixSortRow.
2022-07-26 11:52:31 -07:00
Sebastian Grimberg
9a2f3d5c73
Upgrades to Multigrid for multiple RHS
2022-07-14 15:52:25 -07:00
Sebastian Grimberg
4ffe3ef158
Fix shadowed names, abiguous cases, and make style
2022-07-14 15:52:25 -07:00
Sebastian Grimberg
89b7031a7a
Add interface for multiple RHS solves
...
Also adds AddMult, AddMultTranspose as Operator methods for the ones that support it already.
2022-07-14 15:52:25 -07:00
Robert W. Anderson
4e279ac6b4
fix typo
2022-05-24 13:40:37 -07:00
Robert W. Anderson
33e13e1234
fix for sum op case
2022-05-20 07:36:17 -07:00
Robert W. Anderson
d177af97b3
test triangles
2022-05-19 22:18:04 -07:00
Robert W. Anderson
a0dfd67635
update CHANGELOG
2022-05-19 22:17:37 -07:00
Robert W. Anderson
bfb85c80b7
unit tests for tris and tets
2022-05-19 21:46:09 -07:00
Robert W. Anderson
b68f43c223
support local L2 proj AMR coarsening on non-conforming tris and tets
2022-05-19 21:45:37 -07:00
Robert W. Anderson
649346bdce
minimize diff
2022-05-19 20:28:40 -07:00
Robert W. Anderson
d2bba7e1bb
fuse DG and CG loops in parallel restriction assembly
2022-05-19 20:27:00 -07:00
Robert W. Anderson
999c1be8af
fuse DG and CG loops for global restriction assembly
2022-05-19 19:23:16 -07:00
Robert W. Anderson
452209bb27
add AMR tag to coarsen tests
2022-05-19 19:22:53 -07:00
Robert W. Anderson
38c9ba0b19
clean up unused variable
2022-05-19 16:58:57 -07:00
Robert W. Anderson
7764aee799
fix MPI guard
2022-05-19 16:33:28 -07:00
Robert W. Anderson
a9e0a32888
small cleanups and make style
2022-05-19 16:16:45 -07:00
Robert W. Anderson
f52d05ff19
fix bug in AggregateError with min option
2022-05-19 16:14:38 -07:00
Robert W. Anderson
ef2fb0dfd2
create loop for offdiag parts of discontinuous case in parallel coarsening matrix assembly
2022-05-19 16:12:44 -07:00
Robert W. Anderson
a056c91c6a
add unit tests that stress the correctness of parallel coarsen
2022-05-19 16:11:40 -07:00
Robert W. Anderson
af8ec69446
make style
2022-05-19 14:15:30 -07:00
Robert W. Anderson
116d7b3990
stress test for parallel correctness
2022-05-19 14:05:17 -07:00
Robert W. Anderson
73a8e67efc
make style
2022-05-19 11:56:50 -07:00
Robert W. Anderson
3e5d06aa51
temporary test code for developing parallel derefinement; tests will be captured persistently in test_derefine.cpp as we go and this will be removed at the end
2022-05-19 11:56:34 -07:00
Robert W. Anderson
1224c30c06
split parallel global assembly of the diagonal part of the derefinement matrix into continous and discontinuous cases, analogous to fespace.cpp; one processor case now works
2022-05-19 11:53:29 -07:00
Robert W. Anderson
534c0c5c3b
fix up a shadowing/scope issue
2022-05-18 22:24:01 -07:00
Robert W. Anderson
c2c32d8f4c
merge master
2022-05-18 22:06:55 -07:00
Robert W. Anderson
d9971e817f
use order+1 test function, other cleanups
2022-05-18 22:01:27 -07:00
Robert W. Anderson
5e59345ee8
make style
2022-05-18 21:55:58 -07:00
Robert W. Anderson
ab916272ed
add tests for conservation and L2 optimality of projection for L2 FE spaces across compatible element types, basis types, orders, and dimensions
2022-05-18 21:55:29 -07:00
Robert W. Anderson
0384621463
make style
2022-05-18 21:51:52 -07:00
Robert W. Anderson
66959f111e
add specialized L2 restriction from fine to coarse for discontinuous space elements
2022-05-18 21:51:20 -07:00
Robert W. Anderson
86332c87ee
fix optimality test
2022-05-18 21:47:57 -07:00
Robert W. Anderson
2799bbe8f7
start building out test suite for coarsening GridFunctions
2022-05-17 11:05:00 -07:00
Robert W. Anderson
aed21777fa
perform conservation check and check for local optimality of coarse projection
2022-05-17 11:03:00 -07:00
Robert W. Anderson
0f86f7f249
revert the element restriction for nodal finite elements to the original method - this is needed for coarsening mesh nodes in the H1 space - still need to figure out how to handle L2 spaces with nodal elements
2022-05-17 11:01:57 -07:00
Robert W. Anderson
684270f526
split the assembling of the global refinement matrix into different methods for continuous (old method) and discontinuous (new method) spaces
2022-05-17 10:59:06 -07:00
Robert W. Anderson
ae566f467e
temporary test code w/ visualization; will be removed before merging
2022-05-16 16:02:14 -07:00
Robert W. Anderson
bd362b7612
compute coarse mass matrix and coarse-fine mass matrices separately over different domains of integration; use L2 projection matrices in NodalFiniteElement::GetLocalRestriction
2022-05-15 10:59:55 -07:00
Robert W. Anderson
995baf3b89
add isoparametric transform point matrix for 1D segments
2022-05-15 00:22:05 -07:00
Robert W. Anderson
949e866845
fixes for local L2 projection matrices for coarsening ScalarFiniteElements
2022-05-15 00:20:02 -07:00
Robert W. Anderson
47d8fd1622
when building global R matrix, each row will have multiple sets of entries, corresponding to multiple fine children; the mark and skip mechanism is not appropriate here
2022-05-15 00:11:31 -07:00