minor cleanup

linadvmcl/.gitignore

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+linadv
+output

linadvmcl/makefile

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+# Copyright (c) 2010-2024, Lawrence Livermore National Security, LLC. Produced
+# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
+# LICENSE and NOTICE for details. LLNL-CODE-806117.
+#
+# This file is part of the MFEM library. For more information and source code
+# availability visit https://mfem.org.
+#
+# MFEM is free software; you can redistribute it and/or modify it under the
+# terms of the BSD-3 license. We welcome feedback and contributions, see file
+# CONTRIBUTING.md for details.
+
+# Use the MFEM build directory
+MFEM_DIR ?= ..
+MFEM_BUILD_DIR ?= ..
+MFEM_INSTALL_DIR ?= ../mfem
+SRC = $(if $(MFEM_DIR:..=),$(MFEM_DIR)/linadvmcl/,)
+CONFIG_MK = $(or $(wildcard $(MFEM_BUILD_DIR)/config/config.mk),\
+   $(wildcard $(MFEM_INSTALL_DIR)/share/mfem/config.mk))
+
+MFEM_LIB_FILE = mfem_is_not_built
+-include $(CONFIG_MK)
+
+SEQ_EXAMPLES = ex0 ex1 ex2 ex3 ex4 ex5 ex6 ex7 ex8 ex9 ex10 ex14 ex15 ex16 \
+   ex17 ex18 ex19 ex20 ex21 ex22 ex23 ex24 ex25 ex26 ex27 ex28 ex29 ex30 \
+   ex31 ex33 ex34 ex36 ex37 ex38 ex39 ex40
+PAR_EXAMPLES = ex0p ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex8p ex9p ex10p ex11p \
+   ex12p ex13p ex14p ex15p ex16p ex17p ex18p ex19p ex20p ex21p ex22p ex24p \
+   ex25p ex26p ex27p ex28p ex29p ex30p ex31p ex32p ex33p ex34p ex35p ex36p \
+   ex37p ex39p ex40p
+SEQ_DEVICE_EXAMPLES = ex1 ex3 ex4 ex5 ex6 ex9 ex14 ex22 ex24 ex25 ex26 ex34
+PAR_DEVICE_EXAMPLES = ex1p ex2p ex3p ex4p ex5p ex6p ex7p ex9p ex13p ex14p \
+   ex22p ex24p ex25p ex26p ex34p ex35p
+
+ifeq ($(MFEM_USE_LAPACK),YES)
+   SEQ_EXAMPLES += ex38
+endif
+
+ifeq ($(MFEM_USE_MPI),NO)
+   EXAMPLES = $(SEQ_EXAMPLES)
+else
+   EXAMPLES = $(PAR_EXAMPLES) $(SEQ_EXAMPLES)
+endif
+SUBDIRS =
+ifeq ($(MFEM_USE_AMGX),YES)
+   SUBDIRS += amgx
+endif
+ifeq ($(MFEM_USE_GINKGO),YES)
+   SUBDIRS += ginkgo
+endif
+ifeq ($(MFEM_USE_HIOP),YES)
+   SUBDIRS += hiop
+endif
+ifeq ($(MFEM_USE_PETSC),YES)
+   SUBDIRS += petsc
+endif
+ifeq ($(MFEM_USE_PUMI),YES)
+   SUBDIRS += pumi
+endif
+ifeq ($(MFEM_USE_SUNDIALS),YES)
+   SUBDIRS += sundials
+endif
+ifeq ($(MFEM_USE_SUPERLU),YES)
+   SUBDIRS += superlu
+endif
+ifeq ($(MFEM_USE_MOONOLITH),YES)
+   SUBDIRS += moonolith
+endif
+ifeq ($(MFEM_USE_CALIPER),YES)
+   SUBDIRS += caliper
+endif
+
+SUBDIRS_ALL = $(addsuffix /all,$(SUBDIRS))
+SUBDIRS_TEST = $(addsuffix /test,$(SUBDIRS))
+SUBDIRS_CLEAN = $(addsuffix /clean,$(SUBDIRS))
+SUBDIRS_TPRINT = $(addsuffix /test-print,$(SUBDIRS))
+
+.SUFFIXES:
+.SUFFIXES: .o .cpp .mk
+.PHONY: all clean clean-build clean-exec
+
+# Remove built-in rule
+%: %.cpp
+
+# Replace the default implicit rule for *.cpp files
+%: $(SRC)%.cpp $(MFEM_LIB_FILE) $(CONFIG_MK)
+	$(MFEM_CXX) $(MFEM_FLAGS) $< -o $@ $(MFEM_LIBS)
+
+all: $(EXAMPLES) $(SUBDIRS_ALL)
+
+.PHONY: $(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_CLEAN) $(SUBDIRS_TPRINT)
+$(SUBDIRS_ALL) $(SUBDIRS_TEST) $(SUBDIRS_CLEAN):
+	$(MAKE) -C $(@D) $(@F)
+$(SUBDIRS_TPRINT):
+	@$(MAKE) -C $(@D) $(@F)
+
+# Additional dependencies
+ex18: $(SRC)ex18.hpp
+ex33: $(SRC)ex33.hpp
+ex37: $(SRC)ex37.hpp
+
+ifeq ($(MFEM_USE_MPI),YES)
+ex18p: $(SRC)ex18.hpp
+ex33p: $(SRC)ex33.hpp
+ex37p: $(SRC)ex37.hpp
+endif
+
+MFEM_TESTS = EXAMPLES
+include $(MFEM_TEST_MK)
+test: $(SUBDIRS_TEST)
+test-print: $(SUBDIRS_TPRINT)
+
+# Testing: Parallel vs. serial runs
+RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
+%-test-par: %
+	@$(call mfem-test,$<, $(RUN_MPI), Parallel example)
+%-test-seq: %
+	@$(call mfem-test,$<,, Serial example)
+%-test-par-cuda: %
+	@$(call mfem-test,$<, $(RUN_MPI), Parallel CUDA example,-d cuda)
+%-test-seq-cuda: %
+	@$(call mfem-test,$<,, Serial CUDA example,-d cuda)
+%-test-par-hip: %
+	@$(call mfem-test,$<, $(RUN_MPI), Parallel HIP example,-d hip)
+%-test-seq-hip: %
+	@$(call mfem-test,$<,, Serial HIP example,-d hip)
+
+# Testing: Specific execution options
+ex0-test-seq: ex0
+	@$(call mfem-test,$<,, Serial example,,1)
+ex0p-test-par: ex0p
+	@$(call mfem-test,$<, $(RUN_MPI), Parallel example,,1)
+ex1-test-seq: ex1
+	@$(call mfem-test,$<,, Serial example)
+ex1p-test-par: ex1p
+	@$(call mfem-test,$<, $(RUN_MPI), Parallel example)
+ex10-test-seq: ex10
+	@$(call mfem-test,$<,, Serial example,-tf 5)
+ex10p-test-par: ex10p
+	@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-tf 5)
+ex14-test-seq-cuda: ex14
+	@$(call mfem-test,$<,, Serial CUDA example,-r 2 -pa -d cuda)
+ex14p-test-par-cuda: ex14p
+	@$(call mfem-test,$<, $(RUN_MPI), Parallel CUDA example,-rs 2 -rp 0 -pa -d cuda)
+ex14-test-seq-hip: ex14
+	@$(call mfem-test,$<,, Serial HIP example,-r 2 -pa -d hip)
+ex14p-test-par-hip: ex14p
+	@$(call mfem-test,$<, $(RUN_MPI), Parallel HIP example,-rs 2 -rp 0 -pa -d hip)
+ex15-test-seq: ex15
+	@$(call mfem-test,$<,, Serial example,-e 1)
+ex15p-test-par: ex15p
+	@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-e 1)
+ex27-test-seq: ex27
+	@$(call mfem-test,$<,, Serial example,-dg)
+ex27p-test-par: ex27p
+	@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-dg)
+ex37-test-seq: ex37
+	@$(call mfem-test,$<,, Serial example,-mi 3)
+ex37p-test-par: ex37p
+	@$(call mfem-test,$<, $(RUN_MPI), Parallel example,-mi 3)
+# Testing: optional tests
+ifeq ($(MFEM_USE_STRUMPACK),YES)
+ex11p-test-strumpack: ex11p
+	@$(call mfem-test,$<, $(RUN_MPI), STRUMPACK example,--strumpack)
+test-par-YES: ex11p-test-strumpack
+endif
+ifeq ($(MFEM_USE_SUPERLU),YES)
+ex11p-test-superlu: ex11p
+	@$(call mfem-test,$<, $(RUN_MPI), SuperLU_DIST example,--superlu)
+test-par-YES: ex11p-test-superlu
+endif
+ifeq ($(MFEM_USE_MKL_CPARDISO),YES)
+ex11p-test-cpardiso: ex11p
+	@$(call mfem-test,$<, $(RUN_MPI), MKL_CPARDISO example,--cpardiso)
+test-par-YES: ex11p-test-cpardiso
+endif
+
+# Testing: "test" target and mfem-test* variables are defined in config/test.mk
+
+# Generate an error message if the MFEM library is not built and exit
+$(MFEM_LIB_FILE):
+	$(error The MFEM library is not built)
+
+clean: clean-build clean-exec $(SUBDIRS_CLEAN)
+
+clean-build:
+	rm -f *.o *~ $(SEQ_EXAMPLES) $(PAR_EXAMPLES)
+	rm -rf *.dSYM *.TVD.*breakpoints
+
+clean-exec:
+	@rm -f refined.mesh displaced.mesh mesh.* ex5.mesh ex6p-checkpoint.*
+	@rm -rf Example5* Example9* Example15* Example16* Example23* ParaView
+	@rm -f sphere_refined.* sol.* sol_u.* sol_p.* sol_r.* sol_i.*
+	@rm -f ex9.mesh ex9-mesh.* ex9-init.* ex9-final.*
+	@rm -f deformed.* velocity.* elastic_energy.* mode_* mode_deriv_* flux.*
+	@rm -f ex5-p-*.bp ex9-p-*.bp ex12-p-*.bp ex16-p-*.bp
+	@rm -f ex16.mesh ex16-mesh.* ex16-init.* ex16-final.*
+	@rm -f deformation.* pressure.*
+	@rm -f ex20.dat ex20p_?????.dat gnuplot_ex20.inp gnuplot_ex20p.inp
+	@rm -f ex21*.mesh ex21*.sol ex21p_*.*
+	@rm -f ex23.mesh ex23-*.gf
+	@rm -f ex25.mesh ex25-*.gf ex25p-*.*
+	@rm -f euler-?-final.* euler-?-init.* euler-mesh-final.* euler-mesh.*
+	@rm -rf ex28_* ex28p_*
+	@rm -rf cond.* cond_mesh.* cond_j.* dsol.* port_mesh.* port_mode.*