615 lines
18 KiB
C++
615 lines
18 KiB
C++
// MFEM Example 9
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//
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// Compile with: make ex9
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//
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// Sample runs:
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// ex9 -m ../data/periodic-segment.mesh -p 0 -r 2 -dt 0.005
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// ex9 -m ../data/periodic-square.mesh -p 0 -r 2 -dt 0.01 -tf 10
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// ex9 -m ../data/periodic-hexagon.mesh -p 0 -r 2 -dt 0.01 -tf 10
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// ex9 -m ../data/periodic-square.mesh -p 1 -r 2 -dt 0.005 -tf 9
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// ex9 -m ../data/periodic-hexagon.mesh -p 1 -r 2 -dt 0.005 -tf 9
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// ex9 -m ../data/amr-quad.mesh -p 1 -r 2 -dt 0.002 -tf 9
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// ex9 -m ../data/amr-quad.mesh -p 1 -r 2 -dt 0.02 -s 23 -tf 9
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// ex9 -m ../data/star-q3.mesh -p 1 -r 2 -dt 0.005 -tf 9
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// ex9 -m ../data/star-mixed.mesh -p 1 -r 2 -dt 0.005 -tf 9
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// ex9 -m ../data/disc-nurbs.mesh -p 1 -r 3 -dt 0.005 -tf 9
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// ex9 -m ../data/disc-nurbs.mesh -p 2 -r 3 -dt 0.005 -tf 9
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// ex9 -m ../data/periodic-square.mesh -p 3 -r 4 -dt 0.0025 -tf 9 -vs 20
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// ex9 -m ../data/periodic-cube.mesh -p 0 -r 2 -o 2 -dt 0.02 -tf 8
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// ex9 -m ../data/periodic-square.msh -p 0 -r 2 -dt 0.005 -tf 2
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// ex9 -m ../data/periodic-cube.msh -p 0 -r 1 -o 2 -tf 2
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//
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// Device sample runs:
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// ex9 -pa
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// ex9 -ea
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// ex9 -fa
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// ex9 -pa -m ../data/periodic-cube.mesh
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// ex9 -pa -m ../data/periodic-cube.mesh -d cuda
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// ex9 -ea -m ../data/periodic-cube.mesh -d cuda
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// ex9 -fa -m ../data/periodic-cube.mesh -d cuda
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// ex9 -pa -m ../data/amr-quad.mesh -p 1 -r 2 -dt 0.002 -tf 9 -d cuda
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//
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// Description: This example code solves the time-dependent advection equation
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// du/dt + v.grad(u) = 0, where v is a given fluid velocity, and
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// u0(x)=u(0,x) is a given initial condition.
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//
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// The example demonstrates the use of Discontinuous Galerkin (DG)
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// bilinear forms in MFEM (face integrators), the use of implicit
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// and explicit ODE time integrators, the definition of periodic
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// boundary conditions through periodic meshes, as well as the use
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// of GLVis for persistent visualization of a time-evolving
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// solution. The saving of time-dependent data files for external
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// visualization with VisIt (visit.llnl.gov) and ParaView
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// (paraview.org) is also illustrated.
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#include "mfem.hpp"
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#include <fstream>
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#include <iostream>
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#include <algorithm>
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using namespace std;
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using namespace mfem;
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// Choice for the problem setup. The fluid velocity, initial condition and
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// inflow boundary condition are chosen based on this parameter.
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int problem;
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// Velocity coefficient
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void velocity_function(const Vector &x, Vector &v);
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// Initial condition
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real_t u0_function(const Vector &x);
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// Inflow boundary condition
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real_t inflow_function(const Vector &x);
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// Mesh bounding box
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Vector bb_min, bb_max;
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class DG_Solver : public Solver
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{
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private:
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SparseMatrix &M, &K, A;
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GMRESSolver linear_solver;
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BlockILU prec;
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real_t dt;
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public:
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DG_Solver(SparseMatrix &M_, SparseMatrix &K_, const FiniteElementSpace &fes)
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: M(M_),
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K(K_),
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prec(fes.GetTypicalFE()->GetDof(),
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BlockILU::Reordering::MINIMUM_DISCARDED_FILL),
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dt(-1.0)
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{
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linear_solver.iterative_mode = false;
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linear_solver.SetRelTol(1e-9);
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linear_solver.SetAbsTol(0.0);
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linear_solver.SetMaxIter(100);
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linear_solver.SetPrintLevel(0);
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linear_solver.SetPreconditioner(prec);
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}
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void SetTimeStep(real_t dt_)
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{
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if (dt_ != dt)
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{
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dt = dt_;
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// Form operator A = M - dt*K
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A = K;
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A *= -dt;
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A += M;
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// this will also call SetOperator on the preconditioner
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linear_solver.SetOperator(A);
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}
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}
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void SetOperator(const Operator &op) override
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{
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linear_solver.SetOperator(op);
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}
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void Mult(const Vector &x, Vector &y) const override
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{
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linear_solver.Mult(x, y);
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}
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};
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/** A time-dependent operator for the right-hand side of the ODE. The DG weak
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form of du/dt = -v.grad(u) is M du/dt = K u + b, where M and K are the mass
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and advection matrices, and b describes the flow on the boundary. This can
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be written as a general ODE, du/dt = M^{-1} (K u + b), and this class is
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used to evaluate the right-hand side. */
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class FE_Evolution : public TimeDependentOperator
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{
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private:
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BilinearForm &M, &K;
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const Vector &b;
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Solver *M_prec;
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CGSolver M_solver;
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DG_Solver *dg_solver;
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mutable Vector z;
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public:
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FE_Evolution(BilinearForm &M_, BilinearForm &K_, const Vector &b_);
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void Mult(const Vector &x, Vector &y) const override;
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void ImplicitSolve(const real_t dt, const Vector &x, Vector &k) override;
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~FE_Evolution() override;
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};
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int main(int argc, char *argv[])
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{
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// 1. Parse command-line options.
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problem = 0;
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const char *mesh_file = "../data/periodic-hexagon.mesh";
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int ref_levels = 2;
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int order = 3;
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bool pa = false;
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bool ea = false;
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bool fa = false;
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const char *device_config = "cpu";
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int ode_solver_type = 4;
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real_t t_final = 10.0;
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real_t dt = 0.01;
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bool visualization = true;
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bool visit = false;
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bool paraview = false;
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bool binary = false;
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int vis_steps = 5;
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bool solve_implicit_state = false;
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int precision = 8;
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cout.precision(precision);
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OptionsParser args(argc, argv);
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args.AddOption(&mesh_file, "-m", "--mesh",
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"Mesh file to use.");
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args.AddOption(&problem, "-p", "--problem",
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"Problem setup to use. See options in velocity_function().");
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args.AddOption(&ref_levels, "-r", "--refine",
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"Number of times to refine the mesh uniformly.");
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args.AddOption(&order, "-o", "--order",
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"Order (degree) of the finite elements.");
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args.AddOption(&pa, "-pa", "--partial-assembly", "-no-pa",
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"--no-partial-assembly", "Enable Partial Assembly.");
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args.AddOption(&ea, "-ea", "--element-assembly", "-no-ea",
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"--no-element-assembly", "Enable Element Assembly.");
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args.AddOption(&fa, "-fa", "--full-assembly", "-no-fa",
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"--no-full-assembly", "Enable Full Assembly.");
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args.AddOption(&device_config, "-d", "--device",
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"Device configuration string, see Device::Configure().");
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args.AddOption(&ode_solver_type, "-s", "--ode-solver",
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ODESolver::Types.c_str());
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args.AddOption(&t_final, "-tf", "--t-final",
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"Final time; start time is 0.");
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args.AddOption(&dt, "-dt", "--time-step",
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"Time step.");
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args.AddOption(&solve_implicit_state, "-imp-state", "--implicit-state",
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"-imp-slope", "--implicit-slope",
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"Implicitly solve for stage state or slope.");
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args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
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"--no-visualization",
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"Enable or disable GLVis visualization.");
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args.AddOption(&visit, "-visit", "--visit-datafiles", "-no-visit",
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"--no-visit-datafiles",
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"Save data files for VisIt (visit.llnl.gov) visualization.");
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args.AddOption(¶view, "-paraview", "--paraview-datafiles", "-no-paraview",
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"--no-paraview-datafiles",
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"Save data files for ParaView (paraview.org) visualization.");
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args.AddOption(&binary, "-binary", "--binary-datafiles", "-ascii",
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"--ascii-datafiles",
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"Use binary (Sidre) or ascii format for VisIt data files.");
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args.AddOption(&vis_steps, "-vs", "--visualization-steps",
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"Visualize every n-th timestep.");
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args.Parse();
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if (!args.Good())
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{
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args.PrintUsage(cout);
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return 1;
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}
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args.PrintOptions(cout);
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Device device(device_config);
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device.Print();
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// 2. Read the mesh from the given mesh file. We can handle geometrically
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// periodic meshes in this code.
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Mesh mesh(mesh_file, 1, 1);
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int dim = mesh.Dimension();
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// 3. Define the ODE solver used for time integration. Several explicit
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// Runge-Kutta methods are available.
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unique_ptr<ODESolver> ode_solver = ODESolver::Select(ode_solver_type);
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// 4. Refine the mesh to increase the resolution. In this example we do
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// 'ref_levels' of uniform refinement, where 'ref_levels' is a
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// command-line parameter. If the mesh is of NURBS type, we convert it to
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// a (piecewise-polynomial) high-order mesh.
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for (int lev = 0; lev < ref_levels; lev++)
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{
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mesh.UniformRefinement();
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}
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if (mesh.NURBSext)
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{
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mesh.SetCurvature(max(order, 1));
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}
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mesh.GetBoundingBox(bb_min, bb_max, max(order, 1));
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// 5. Define the discontinuous DG finite element space of the given
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// polynomial order on the refined mesh.
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DG_FECollection fec(order, dim, BasisType::GaussLobatto);
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FiniteElementSpace fes(&mesh, &fec);
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cout << "Number of unknowns: " << fes.GetVSize() << endl;
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// 6. Set up and assemble the bilinear and linear forms corresponding to the
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// DG discretization. The DGTraceIntegrator involves integrals over mesh
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// interior faces.
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VectorFunctionCoefficient velocity(dim, velocity_function);
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FunctionCoefficient inflow(inflow_function);
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FunctionCoefficient u0(u0_function);
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BilinearForm m(&fes);
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BilinearForm k(&fes);
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if (pa)
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{
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m.SetAssemblyLevel(AssemblyLevel::PARTIAL);
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k.SetAssemblyLevel(AssemblyLevel::PARTIAL);
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}
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else if (ea)
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{
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m.SetAssemblyLevel(AssemblyLevel::ELEMENT);
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k.SetAssemblyLevel(AssemblyLevel::ELEMENT);
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}
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else if (fa)
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{
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m.SetAssemblyLevel(AssemblyLevel::FULL);
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k.SetAssemblyLevel(AssemblyLevel::FULL);
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}
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m.AddDomainIntegrator(new MassIntegrator);
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constexpr real_t alpha = -1.0;
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k.AddDomainIntegrator(new ConvectionIntegrator(velocity, alpha));
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k.AddInteriorFaceIntegrator(
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new NonconservativeDGTraceIntegrator(velocity, alpha));
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k.AddBdrFaceIntegrator(
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new NonconservativeDGTraceIntegrator(velocity, alpha));
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LinearForm b(&fes);
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b.AddBdrFaceIntegrator(
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new BoundaryFlowIntegrator(inflow, velocity, alpha));
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m.Assemble();
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int skip_zeros = 0;
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k.Assemble(skip_zeros);
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b.Assemble();
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m.Finalize();
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k.Finalize(skip_zeros);
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// 7. Define the initial conditions, save the corresponding grid function to
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// a file and (optionally) save data in the VisIt format and initialize
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// GLVis visualization.
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GridFunction u(&fes);
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u.ProjectCoefficient(u0);
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{
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ofstream omesh("ex9.mesh");
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omesh.precision(precision);
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mesh.Print(omesh);
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ofstream osol("ex9-init.gf");
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osol.precision(precision);
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u.Save(osol);
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}
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// Create data collection for solution output: either VisItDataCollection for
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// ascii data files, or SidreDataCollection for binary data files.
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DataCollection *dc = NULL;
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if (visit)
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{
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if (binary)
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{
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#ifdef MFEM_USE_SIDRE
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dc = new SidreDataCollection("Example9", &mesh);
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#else
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MFEM_ABORT("Must build with MFEM_USE_SIDRE=YES for binary output.");
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#endif
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}
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else
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{
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dc = new VisItDataCollection("Example9", &mesh);
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dc->SetPrecision(precision);
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}
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dc->RegisterField("solution", &u);
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dc->SetCycle(0);
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dc->SetTime(0.0);
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dc->Save();
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}
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ParaViewDataCollection *pd = NULL;
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if (paraview)
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{
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pd = new ParaViewDataCollection("Example9", &mesh);
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pd->SetPrefixPath("ParaView");
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pd->RegisterField("solution", &u);
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pd->SetLevelsOfDetail(order);
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pd->SetDataFormat(VTKFormat::BINARY);
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pd->SetHighOrderOutput(true);
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pd->SetCycle(0);
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pd->SetTime(0.0);
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pd->Save();
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}
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socketstream sout;
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if (visualization)
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{
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char vishost[] = "localhost";
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int visport = 19916;
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sout.open(vishost, visport);
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if (!sout)
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{
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cout << "Unable to connect to GLVis server at "
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<< vishost << ':' << visport << endl;
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visualization = false;
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cout << "GLVis visualization disabled.\n";
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}
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else
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{
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sout.precision(precision);
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sout << "solution\n" << mesh << u;
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sout << "pause\n";
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sout << flush;
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cout << "GLVis visualization paused."
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<< " Press space (in the GLVis window) to resume it.\n";
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}
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}
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// 8. Define the time-dependent evolution operator describing the ODE
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// right-hand side, and perform time-integration (looping over the time
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// iterations, ti, with a time-step dt).
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FE_Evolution adv(m, k, b);
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using ImplicitVariableType = FE_Evolution::ImplicitVariableType;
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ImplicitVariableType imp_var = solve_implicit_state ?
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ImplicitVariableType::STATE
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: ImplicitVariableType::SLOPE;
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adv.SetImplicitVariableType(imp_var);
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real_t t = 0.0;
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adv.SetTime(t);
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ode_solver->Init(adv);
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bool done = false;
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for (int ti = 0; !done; )
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{
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real_t dt_real = min(dt, t_final - t);
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ode_solver->Step(u, t, dt_real);
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ti++;
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done = (t >= t_final - 1e-8*dt);
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if (done || ti % vis_steps == 0)
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{
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cout << "time step: " << ti << ", time: " << t << endl;
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if (visualization)
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{
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sout << "solution\n" << mesh << u << flush;
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}
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if (visit)
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{
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dc->SetCycle(ti);
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dc->SetTime(t);
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dc->Save();
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}
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if (paraview)
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{
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pd->SetCycle(ti);
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pd->SetTime(t);
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pd->Save();
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}
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}
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}
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// 9. Save the final solution. This output can be viewed later using GLVis:
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// "glvis -m ex9.mesh -g ex9-final.gf".
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{
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ofstream osol("ex9-final.gf");
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osol.precision(precision);
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u.Save(osol);
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}
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// 10. Free the used memory.
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delete pd;
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delete dc;
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return 0;
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}
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// Implementation of class FE_Evolution
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FE_Evolution::FE_Evolution(BilinearForm &M_, BilinearForm &K_, const Vector &b_)
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: TimeDependentOperator(M_.FESpace()->GetTrueVSize()),
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M(M_), K(K_), b(b_), z(height)
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{
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Array<int> ess_tdof_list;
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if (M.GetAssemblyLevel() == AssemblyLevel::LEGACY)
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{
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M_prec = new DSmoother(M.SpMat());
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M_solver.SetOperator(M.SpMat());
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dg_solver = new DG_Solver(M.SpMat(), K.SpMat(), *M.FESpace());
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}
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else
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{
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M_prec = new OperatorJacobiSmoother(M, ess_tdof_list);
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M_solver.SetOperator(M);
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dg_solver = NULL;
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}
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M_solver.SetPreconditioner(*M_prec);
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M_solver.iterative_mode = false;
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M_solver.SetRelTol(1e-9);
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M_solver.SetAbsTol(0.0);
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M_solver.SetMaxIter(100);
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M_solver.SetPrintLevel(0);
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}
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void FE_Evolution::Mult(const Vector &x, Vector &y) const
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{
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// y = M^{-1} (K x + b)
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K.Mult(x, z);
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z += b;
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M_solver.Mult(z, y);
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}
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void FE_Evolution::ImplicitSolve(const real_t dt, const Vector &x, Vector &k)
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{
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MFEM_VERIFY(dg_solver != NULL,
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"Implicit time integration is not supported with partial assembly");
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// Construct current right-hand side for stage state vs. slope solve
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if (ImplicitVarTypeIsState())
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{
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// k, on return, is the stage value u
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M.Mult(x, z);
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}
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else
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{
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// k, on return, is the stage slope du/dt
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K.Mult(x, z);
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}
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z += b;
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dg_solver->SetTimeStep(dt);
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dg_solver->Mult(z, k);
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}
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FE_Evolution::~FE_Evolution()
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{
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delete M_prec;
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delete dg_solver;
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}
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// Velocity coefficient
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void velocity_function(const Vector &x, Vector &v)
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{
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int dim = x.Size();
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// map to the reference [-1,1] domain
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Vector X(dim);
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for (int i = 0; i < dim; i++)
|
|
{
|
|
real_t center = (bb_min[i] + bb_max[i]) * 0.5;
|
|
X(i) = 2 * (x(i) - center) / (bb_max[i] - bb_min[i]);
|
|
}
|
|
|
|
switch (problem)
|
|
{
|
|
case 0:
|
|
{
|
|
// Translations in 1D, 2D, and 3D
|
|
switch (dim)
|
|
{
|
|
case 1: v(0) = 1.0; break;
|
|
case 2: v(0) = sqrt(2./3.); v(1) = sqrt(1./3.); break;
|
|
case 3: v(0) = sqrt(3./6.); v(1) = sqrt(2./6.); v(2) = sqrt(1./6.);
|
|
break;
|
|
}
|
|
break;
|
|
}
|
|
case 1:
|
|
case 2:
|
|
{
|
|
// Clockwise rotation in 2D around the origin
|
|
const real_t w = M_PI/2;
|
|
switch (dim)
|
|
{
|
|
case 1: v(0) = 1.0; break;
|
|
case 2: v(0) = w*X(1); v(1) = -w*X(0); break;
|
|
case 3: v(0) = w*X(1); v(1) = -w*X(0); v(2) = 0.0; break;
|
|
}
|
|
break;
|
|
}
|
|
case 3:
|
|
{
|
|
// Clockwise twisting rotation in 2D around the origin
|
|
const real_t w = M_PI/2;
|
|
real_t d = max((X(0)+1.)*(1.-X(0)),0.) * max((X(1)+1.)*(1.-X(1)),0.);
|
|
d = d*d;
|
|
switch (dim)
|
|
{
|
|
case 1: v(0) = 1.0; break;
|
|
case 2: v(0) = d*w*X(1); v(1) = -d*w*X(0); break;
|
|
case 3: v(0) = d*w*X(1); v(1) = -d*w*X(0); v(2) = 0.0; break;
|
|
}
|
|
break;
|
|
}
|
|
}
|
|
}
|
|
|
|
// Initial condition
|
|
real_t u0_function(const Vector &x)
|
|
{
|
|
int dim = x.Size();
|
|
|
|
// map to the reference [-1,1] domain
|
|
Vector X(dim);
|
|
for (int i = 0; i < dim; i++)
|
|
{
|
|
real_t center = (bb_min[i] + bb_max[i]) * 0.5;
|
|
X(i) = 2 * (x(i) - center) / (bb_max[i] - bb_min[i]);
|
|
}
|
|
|
|
switch (problem)
|
|
{
|
|
case 0:
|
|
case 1:
|
|
{
|
|
switch (dim)
|
|
{
|
|
case 1:
|
|
return exp(-40.*pow(X(0)-0.5,2));
|
|
case 2:
|
|
case 3:
|
|
{
|
|
real_t rx = 0.45, ry = 0.25, cx = 0., cy = -0.2, w = 10.;
|
|
if (dim == 3)
|
|
{
|
|
const real_t s = (1. + 0.25*cos(2*M_PI*X(2)));
|
|
rx *= s;
|
|
ry *= s;
|
|
}
|
|
return ( std::erfc(w*(X(0)-cx-rx))*std::erfc(-w*(X(0)-cx+rx)) *
|
|
std::erfc(w*(X(1)-cy-ry))*std::erfc(-w*(X(1)-cy+ry)) )/16;
|
|
}
|
|
}
|
|
}
|
|
case 2:
|
|
{
|
|
real_t x_ = X(0), y_ = X(1), rho, phi;
|
|
rho = std::hypot(x_, y_);
|
|
phi = atan2(y_, x_);
|
|
return pow(sin(M_PI*rho),2)*sin(3*phi);
|
|
}
|
|
case 3:
|
|
{
|
|
const real_t f = M_PI;
|
|
return sin(f*X(0))*sin(f*X(1));
|
|
}
|
|
}
|
|
return 0.0;
|
|
}
|
|
|
|
// Inflow boundary condition (zero for the problems considered in this example)
|
|
real_t inflow_function(const Vector &x)
|
|
{
|
|
switch (problem)
|
|
{
|
|
case 0:
|
|
case 1:
|
|
case 2:
|
|
case 3: return 0.0;
|
|
}
|
|
return 0.0;
|
|
}
|