Compare commits
7
Commits
| Author | SHA1 | Date | |
|---|---|---|---|
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86b3a2e3b4 | ||
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3acdce1cb5 | ||
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21e6939562 | ||
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d14f14323c | ||
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b58c3f956d | ||
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76ab9919d8 | ||
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3f625c9efa |
+11
-16
@@ -23,15 +23,16 @@ install:
|
||||
- set MSMPI_LIB64=C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x64
|
||||
- set MSMPI_INC=C:\Program Files (x86)\Microsoft SDKs\MPI\Include
|
||||
|
||||
# Install METIS, use MFEM's mirror because the original source server is often
|
||||
# down and we don't support yet the new repo https://github.com/KarypisLab/METIS
|
||||
# Install METIS, use a mirror because the original source server is not always
|
||||
# up. Original url:
|
||||
# http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz
|
||||
- ps: Start-FileDownload 'https://mfem.github.io/tpls/metis-5.1.0.tar.gz'
|
||||
- 7z x metis-5.1.0.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd metis-5.1.0
|
||||
- ps: ( get-content "GKlib\gk_arch.h") | % { If ($_.ReadCount -ge 52) {$_ -replace "#ifdef __MSC__","#ifdef DISABLE_THIS_ANCIENT_MSC_CHECK"} Else {$_} } | set-content "GKlib\gk_arch.h"
|
||||
- cmake -H. -Bbuild
|
||||
# -DCMAKE_BUILD_TYPE=Release
|
||||
- cmake --build build --target metis -j 4
|
||||
- cmake --build build
|
||||
- set METIS_PATH=%cd%
|
||||
- cd ..
|
||||
|
||||
@@ -40,7 +41,7 @@ install:
|
||||
- 7z x v2.19.0.tar.gz -so | 7z x -si -ttar > nul
|
||||
- cd hypre-2.19.0/src
|
||||
- cmake -H. -Bbuild
|
||||
- cmake --build build -j 4
|
||||
- cmake --build build
|
||||
- cmake --build build --target install
|
||||
- cd ../..
|
||||
|
||||
@@ -49,20 +50,14 @@ install:
|
||||
|
||||
# MFEM
|
||||
before_build:
|
||||
- cmake . -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
|
||||
# - cmake . -Bbuild_serial -DMFEM_USE_MPI=FALSE
|
||||
- cmake . -Bbuild_shared_serial -DMFEM_USE_MPI=FALSE -DBUILD_SHARED_LIBS=ON
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_parallel -DMFEM_USE_MPI=TRUE -DMFEM_USE_METIS_5=TRUE -DHYPRE_DIR=%cd%\..\hypre-2.19.0\src\hypre -DMETIS_LIBRARIES=%METIS_PATH%\build\libmetis\Debug\metis.lib -DMETIS_INCLUDE_DIRS=%METIS_PATH%\include
|
||||
- cmake -H. -DCMAKE_INSTALL_PREFIX=install -Bbuild_serial -DMFEM_USE_MPI=FALSE
|
||||
|
||||
build_script:
|
||||
- cmake --build build_parallel --config Debug -j 4
|
||||
# - cmake --build build_serial --config Release -j 4
|
||||
# - cmake --build build_serial --target exec --config Release -j 4
|
||||
- cmake --build build_shared_serial --config Release -j 4
|
||||
- cmake --build build_shared_serial --target exec --config Release -j 4
|
||||
- cmake --build build_parallel --config Release -j 4
|
||||
- cmake --build build_serial --config Release -j 4
|
||||
- cmake --build build_serial --target exec --config Release -j 4
|
||||
|
||||
after_build:
|
||||
# - cd build_serial
|
||||
# - ctest -C Release --output-on-failure
|
||||
# - cd ..
|
||||
- cd build_shared_serial
|
||||
- cd build_serial
|
||||
- ctest -C Release --output-on-failure
|
||||
|
||||
@@ -62,7 +62,7 @@ jobs:
|
||||
|
||||
- name: GHCR Login
|
||||
if: (github.event_name != 'pull_request')
|
||||
uses: docker/login-action@v2
|
||||
uses: docker/login-action@v1
|
||||
with:
|
||||
registry: ghcr.io
|
||||
username: ${{ github.actor }}
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -74,19 +74,12 @@ jobs:
|
||||
codecov: YES
|
||||
- os: windows-latest
|
||||
codecov: NO
|
||||
- os: windows-latest
|
||||
target: opt
|
||||
mpi: par
|
||||
config-opts: '-DBUILD_SHARED_LIBS=ON'
|
||||
- os: ubuntu-latest
|
||||
target: opt
|
||||
codecov: NO
|
||||
mpi: par
|
||||
build-system: cmake
|
||||
hypre-target: int32
|
||||
# This option can be set to pass additional configuration options to
|
||||
# the MFEM configuration command.
|
||||
# config-opts: '-DCMAKE_VERBOSE_MAKEFILE=ON'
|
||||
- os: ubuntu-latest
|
||||
target: opt
|
||||
codecov: NO
|
||||
@@ -101,7 +94,7 @@ jobs:
|
||||
# This external action allows to interrupt a workflow already running on
|
||||
# the same branch to save resource
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
uses: styfle/cancel-workflow-action@0.9.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
@@ -109,7 +102,7 @@ jobs:
|
||||
# /home/runner/work/mfem/mfem/mfem
|
||||
# Note: Done now to access "install-hypre" and "install-metis" actions.
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
uses: actions/checkout@v2
|
||||
with:
|
||||
path: ${{ env.MFEM_TOP_DIR }}
|
||||
# Fetch the complete history for codecov to access commits ID
|
||||
@@ -122,25 +115,25 @@ jobs:
|
||||
if: matrix.mpi == 'par' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
sudo apt-get install mpich libmpich-dev
|
||||
export MAKE_CXX_FLAG="MPICXX=mpic++"
|
||||
|
||||
- name: get lcov (Linux)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
sudo apt-get install lcov
|
||||
|
||||
# Keep the following section in case we need it again in the future,
|
||||
# see: https://github.com/mfem/mfem/pull/3385#discussion_r1058013032
|
||||
# - name: Set up Homebrew
|
||||
# if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-latest'
|
||||
# uses: Homebrew/actions/setup-homebrew@master
|
||||
- name: Set up Homebrew
|
||||
if: ( matrix.mpi == 'par' || matrix.codecov == 'YES' ) && matrix.os == 'macos-latest'
|
||||
uses: Homebrew/actions/setup-homebrew@c4aafe8c4620bf08883dd4679c374f11e73329d3
|
||||
|
||||
- name: get MPI (MacOS)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'macos-latest'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
brew install openmpi
|
||||
export MAKE_CXX_FLAG="MPICXX=mpic++"
|
||||
|
||||
- name: get lcov (MacOS)
|
||||
- name: get MPI (MacOS)
|
||||
if: matrix.codecov == 'YES' && matrix.os == 'macos-latest'
|
||||
run: |
|
||||
export HOMEBREW_NO_INSTALL_CLEANUP=1
|
||||
@@ -148,21 +141,21 @@ jobs:
|
||||
|
||||
- name: get MPI (Windows)
|
||||
if: matrix.mpi == 'par' && matrix.os == 'windows-latest'
|
||||
uses: mpi4py/setup-mpi@v1.1.4
|
||||
uses: mpi4py/setup-mpi@v1.0.3
|
||||
|
||||
# Get Hypre through cache, or build it.
|
||||
# Install will only run on cache miss.
|
||||
- name: cache hypre
|
||||
id: hypre-cache
|
||||
if: matrix.mpi == 'par'
|
||||
uses: actions/cache@v3
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-${{ matrix.hypre-target }}-v2.2
|
||||
|
||||
- name: get hypre
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os != 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.2
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -171,7 +164,7 @@ jobs:
|
||||
|
||||
- name: get hypre (Windows)
|
||||
if: matrix.mpi == 'par' && steps.hypre-cache.outputs.cache-hit != 'true' && matrix.os == 'windows-latest'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.2
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -183,27 +176,26 @@ jobs:
|
||||
- name: cache metis
|
||||
id: metis-cache
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest'
|
||||
uses: actions/cache@v3
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
|
||||
|
||||
- name: install metis
|
||||
if: matrix.mpi == 'par' && matrix.os != 'windows-latest' && steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
uses: mfem/github-actions/build-metis@v2.2
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
- name: cache vcpkg (Windows)
|
||||
id: vcpkg-cache
|
||||
if: matrix.os == 'windows-latest'
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: vcpkg_cache
|
||||
key: ${{ runner.os }}-${{ matrix.mpi }}-vcpkg-v1
|
||||
|
||||
- name: prepare vcpkg binary cache location (Windows)
|
||||
- name: prepare binary cache location
|
||||
if: matrix.os == 'windows-latest' && steps.vcpkg-cache.outputs.cache-hit != 'true'
|
||||
run: |
|
||||
mkdir -p vcpkg_cache
|
||||
@@ -217,7 +209,7 @@ jobs:
|
||||
|
||||
# MFEM build and test
|
||||
- name: build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
uses: mfem/github-actions/build-mfem@v2.2
|
||||
env:
|
||||
VCPKG_DEFAULT_BINARY_CACHE: ${{ github.workspace }}/vcpkg_cache
|
||||
with:
|
||||
@@ -229,7 +221,7 @@ jobs:
|
||||
hypre-dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
metis-dir: ${{ env.METIS_TOP_DIR }}
|
||||
mfem-dir: ${{ env.MFEM_TOP_DIR }}
|
||||
config-options: ${{ matrix.config-opts }}
|
||||
config-options: ${{ env.MFEM_EXTRA_CONFIG }}
|
||||
library-only: ${{ matrix.target == 'dbg' }}
|
||||
|
||||
# Run checks (and only checks) on debug targets
|
||||
@@ -238,7 +230,11 @@ jobs:
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make check
|
||||
|
||||
# Note: 'tests' include the unit tests
|
||||
- name: unit tests
|
||||
if: matrix.build-system == 'make' && matrix.target == 'opt'
|
||||
run: |
|
||||
cd ${{ env.MFEM_TOP_DIR }} && make unittest
|
||||
|
||||
- name: tests
|
||||
if: matrix.build-system == 'make' && matrix.target == 'opt'
|
||||
run: |
|
||||
@@ -251,7 +247,7 @@ jobs:
|
||||
cd ${{ env.MFEM_TOP_DIR }} && cmake --build build --target check --config ${CTEST_CONFIG}
|
||||
shell: bash
|
||||
|
||||
- name: cmake unit tests (Ubuntu)
|
||||
- name: cmake unit tests (Ubuntu 20.04)
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os == 'ubuntu-latest'
|
||||
run: |
|
||||
CTEST_CONFIG="Release"
|
||||
@@ -263,15 +259,13 @@ jobs:
|
||||
if: matrix.build-system == 'cmake' && matrix.target == 'opt' && matrix.os != 'ubuntu-latest'
|
||||
run: |
|
||||
CTEST_CONFIG="Release"
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build && \
|
||||
ctest --output-on-failure -C ${CTEST_CONFIG} || \
|
||||
ctest --rerun-failed --output-on-failure -C ${CTEST_CONFIG}
|
||||
cd ${{ env.MFEM_TOP_DIR }}/build && ctest --output-on-failure -C ${CTEST_CONFIG}
|
||||
shell: bash
|
||||
|
||||
# Code coverage (process and upload reports)
|
||||
- name: codecov
|
||||
if: matrix.codecov == 'YES'
|
||||
uses: mfem/github-actions/upload-coverage@v2.4
|
||||
uses: mfem/github-actions/upload-coverage@v2.0
|
||||
with:
|
||||
name: ${{ matrix.os }}-${{ matrix.build-system }}-${{ matrix.target }}-${{ matrix.mpi }}-${{ matrix.hypre-target }}
|
||||
project_dir: ${{ env.MFEM_TOP_DIR }}
|
||||
|
||||
@@ -49,6 +49,7 @@ jobs:
|
||||
|
||||
# Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
|
||||
# queries: security-extended,security-and-quality
|
||||
queries: lgtm
|
||||
|
||||
|
||||
# Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -35,29 +35,30 @@ jobs:
|
||||
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
uses: styfle/cancel-workflow-action@0.9.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
- name: checkout MFEM
|
||||
uses: actions/checkout@v3
|
||||
uses: actions/checkout@v2
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
- name: Get MPI (Linux)
|
||||
run: |
|
||||
sudo apt-get install mpich libmpich-dev
|
||||
export MAKE_CXX_FLAG="MPICXX=mpic++"
|
||||
|
||||
- name: Cache Hypre Install
|
||||
id: hypre-cache
|
||||
uses: actions/cache@v3
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.HYPRE_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.HYPRE_TOP_DIR }}-v2.2
|
||||
|
||||
- name: Get Hypre
|
||||
if: steps.hypre-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-hypre@v2.4
|
||||
uses: mfem/github-actions/build-hypre@v2.2
|
||||
with:
|
||||
archive: ${{ env.HYPRE_ARCHIVE }}
|
||||
dir: ${{ env.HYPRE_TOP_DIR }}
|
||||
@@ -65,21 +66,21 @@ jobs:
|
||||
|
||||
- name: Cache Metis Install
|
||||
id: metis-cache
|
||||
uses: actions/cache@v3
|
||||
uses: actions/cache@v2
|
||||
with:
|
||||
path: ${{ env.METIS_TOP_DIR }}
|
||||
key: ${{ runner.os }}-build-${{ env.METIS_TOP_DIR }}-v2.2
|
||||
|
||||
- name: Install Metis
|
||||
if: steps.metis-cache.outputs.cache-hit != 'true'
|
||||
uses: mfem/github-actions/build-metis@v2.4
|
||||
uses: mfem/github-actions/build-metis@v2.2
|
||||
with:
|
||||
archive: ${{ env.METIS_ARCHIVE }}
|
||||
dir: ${{ env.METIS_TOP_DIR }}
|
||||
|
||||
# MFEM build and test
|
||||
- name: build-mfem
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
uses: mfem/github-actions/build-mfem@v2.2
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
|
||||
@@ -1,70 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
name: "Sanitizer"
|
||||
|
||||
permissions:
|
||||
actions: write
|
||||
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- next
|
||||
pull_request:
|
||||
workflow_dispatch:
|
||||
|
||||
jobs:
|
||||
Serial:
|
||||
runs-on: ubuntu-latest
|
||||
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
- name: MFEM Checkout
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
path: mfem
|
||||
|
||||
- name: MFEM Build
|
||||
uses: mfem/github-actions/build-mfem@v2.4
|
||||
with:
|
||||
os: ${{ runner.os }}
|
||||
target: opt
|
||||
mpi: seq
|
||||
hypre-dir: unused-hypre-dir
|
||||
metis-dir: unused-metis-dir
|
||||
mfem-dir: mfem
|
||||
build-system: make
|
||||
library-only: false
|
||||
config-options:
|
||||
CXX="clang++-14"
|
||||
CXXFLAGS="-g -O1 -std=c++11
|
||||
-fsanitize=address
|
||||
-fno-omit-frame-pointer
|
||||
-fsanitize-address-use-after-scope"
|
||||
|
||||
- name: MFEM Info
|
||||
working-directory: mfem
|
||||
run: make info
|
||||
|
||||
- name: MFEM Sanitize
|
||||
working-directory: mfem
|
||||
run:
|
||||
ASAN_OPTIONS="detect_leaks=1,
|
||||
strict_init_order=1,
|
||||
strict_string_checks=1,
|
||||
check_initialization_order=1,
|
||||
detect_stack_use_after_return=1"
|
||||
make test
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -34,12 +34,12 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.11.0
|
||||
uses: styfle/cancel-workflow-action@0.9.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
uses: actions/checkout@v2
|
||||
|
||||
- name: copyright check
|
||||
id: copyright
|
||||
@@ -84,7 +84,7 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
uses: actions/checkout@v2
|
||||
|
||||
- name: get astyle
|
||||
run: |
|
||||
@@ -101,16 +101,13 @@ jobs:
|
||||
github.event.pull_request.head.repo.full_name != github.repository)
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
uses: actions/checkout@v2
|
||||
|
||||
- name: get doxygen and graphviz
|
||||
run: |
|
||||
sudo apt-get install doxygen graphviz
|
||||
|
||||
- name: update doxygen config file
|
||||
run: |
|
||||
cd doc
|
||||
doxygen -u CodeDocumentation.conf.in
|
||||
doxygen -u CodeDocumentation.conf.in 2>/dev/null
|
||||
|
||||
- name: build documentation
|
||||
run: |
|
||||
@@ -126,7 +123,7 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: checkout mfem
|
||||
uses: actions/checkout@v3
|
||||
uses: actions/checkout@v2
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
|
||||
+7
-51
@@ -21,15 +21,11 @@ CMakeFiles/
|
||||
# Default install location
|
||||
/mfem/
|
||||
|
||||
# Typical build directory
|
||||
/build/
|
||||
|
||||
# Generated files in main directory, config/ and docs/
|
||||
/deps.mk
|
||||
config/_config.hpp
|
||||
config/config.mk
|
||||
config/sample-runs-build.log
|
||||
config/user.cmake
|
||||
config/user.mk
|
||||
doc/CodeDocumentation.conf
|
||||
doc/CodeDocumentation.html
|
||||
@@ -113,12 +109,6 @@ examples/ex25p-*.*
|
||||
examples/ex28_*
|
||||
examples/ex28p_*
|
||||
examples/flux.*
|
||||
examples/dsol.*
|
||||
examples/cond.*
|
||||
examples/cond_j.*
|
||||
examples/cond_mesh.*
|
||||
examples/port_mesh.*
|
||||
examples/port_mode.*
|
||||
|
||||
examples/amgx/ex1
|
||||
examples/amgx/ex1p
|
||||
@@ -128,9 +118,11 @@ examples/amgx/sol.gf
|
||||
examples/amgx/mesh.*
|
||||
examples/amgx/sol.*
|
||||
|
||||
examples/ginkgo/ex1
|
||||
examples/ginkgo/refined.mesh
|
||||
examples/ginkgo/sol.gf
|
||||
examples/gingko/ex1
|
||||
examples/gingko/refined.mesh
|
||||
examples/gingko/sol.gf
|
||||
examples/gingko/mesh.*
|
||||
examples/gingko/sol.*
|
||||
|
||||
examples/hiop/ex9
|
||||
examples/hiop/ex9p
|
||||
@@ -156,8 +148,8 @@ examples/petsc/velocity.*
|
||||
examples/petsc/elastic_energy.*
|
||||
examples/petsc/mode_*
|
||||
|
||||
examples/pumi/ex[12]
|
||||
examples/pumi/ex[16]p
|
||||
examples/pumi/ex1
|
||||
examples/pumi/ex[126]p
|
||||
examples/pumi/refined.mesh
|
||||
examples/pumi/sol.gf
|
||||
examples/pumi/mesh.*
|
||||
@@ -202,9 +194,6 @@ miniapps/gslib/field-diff
|
||||
miniapps/gslib/field-interp
|
||||
miniapps/gslib/findpts
|
||||
miniapps/gslib/pfindpts
|
||||
miniapps/gslib/schwarz_ex1
|
||||
miniapps/gslib/schwarz_ex1p
|
||||
miniapps/gslib/interpolated.gf
|
||||
|
||||
miniapps/meshing/mobius-strip
|
||||
miniapps/meshing/klein-bottle
|
||||
@@ -214,26 +203,20 @@ miniapps/meshing/mesh-explorer
|
||||
miniapps/meshing/shaper
|
||||
miniapps/meshing/extruder
|
||||
miniapps/meshing/trimmer
|
||||
miniapps/meshing/reflector
|
||||
miniapps/meshing/mesh-optimizer
|
||||
miniapps/meshing/pmesh-optimizer
|
||||
miniapps/meshing/pmesh-fitting
|
||||
miniapps/meshing/minimal-surface
|
||||
miniapps/meshing/pminimal-surface
|
||||
miniapps/meshing/polar-nc
|
||||
miniapps/meshing/mesh-quality
|
||||
miniapps/meshing/mobius-strip.mesh
|
||||
miniapps/meshing/klein-bottle.mesh
|
||||
miniapps/meshing/toroid-*.mesh
|
||||
miniapps/meshing/twist-*.mesh
|
||||
miniapps/meshing/mesh-explorer.mesh
|
||||
miniapps/meshing/partitioning.txt
|
||||
miniapps/meshing/mesh-explorer-visit*
|
||||
miniapps/meshing/mesh-explorer-paraview/
|
||||
miniapps/meshing/shaper.mesh
|
||||
miniapps/meshing/extruder.mesh
|
||||
miniapps/meshing/trimmer.mesh
|
||||
miniapps/meshing/reflected.mesh
|
||||
miniapps/meshing/optimized*
|
||||
miniapps/meshing/perturbed*
|
||||
miniapps/meshing/polar-nc.mesh
|
||||
@@ -258,22 +241,17 @@ miniapps/navier/navier_tgv
|
||||
miniapps/navier/navier_shear
|
||||
miniapps/navier/navier_3dfoc
|
||||
miniapps/navier/navier_turbchan
|
||||
miniapps/navier/navier_cht
|
||||
miniapps/navier/tgv_out*.txt
|
||||
miniapps/navier/*_output
|
||||
|
||||
miniapps/nurbs/nurbs_ex1
|
||||
miniapps/nurbs/nurbs_ex1p
|
||||
miniapps/nurbs/nurbs_ex11p
|
||||
miniapps/nurbs/nurbs_patch_ex1
|
||||
miniapps/nurbs/nurbs_curveint
|
||||
miniapps/nurbs/refined.mesh
|
||||
miniapps/nurbs/mesh.*
|
||||
miniapps/nurbs/sol.*
|
||||
miniapps/nurbs/mode_*
|
||||
miniapps/nurbs/Example1*
|
||||
miniapps/nurbs/sin-fit.mesh
|
||||
miniapps/nurbs/CurveInt
|
||||
|
||||
miniapps/performance/ex1
|
||||
miniapps/performance/ex1p
|
||||
@@ -296,10 +274,7 @@ miniapps/tools/display-basis
|
||||
miniapps/tools/load-dc
|
||||
miniapps/tools/convert-dc
|
||||
miniapps/tools/lor-transfer
|
||||
miniapps/tools/plor-transfer
|
||||
miniapps/tools/get-values
|
||||
miniapps/tools/check-tmop-metric
|
||||
miniapps/tools/tmop-metric-magnitude
|
||||
|
||||
miniapps/toys/automata
|
||||
miniapps/toys/life
|
||||
@@ -329,28 +304,11 @@ miniapps/solvers/ParaView
|
||||
miniapps/solvers/mesh.*
|
||||
miniapps/solvers/sol.*
|
||||
|
||||
miniapps/hdiv-linear-solver/darcy
|
||||
miniapps/hdiv-linear-solver/grad_div
|
||||
|
||||
miniapps/parelag/MultilevelHcurlHdivSolver
|
||||
miniapps/parelag/*.mesh
|
||||
|
||||
miniapps/multidomain/multidomain
|
||||
miniapps/hooke/hooke
|
||||
|
||||
miniapps/dpg/diffusion
|
||||
miniapps/dpg/pdiffusion
|
||||
miniapps/dpg/convection-diffusion
|
||||
miniapps/dpg/pconvection-diffusion
|
||||
miniapps/dpg/acoustics
|
||||
miniapps/dpg/pacoustics
|
||||
miniapps/dpg/maxwell
|
||||
miniapps/dpg/pmaxwell
|
||||
miniapps/dpg/ParaView
|
||||
|
||||
miniapps/spde/generate_random_field
|
||||
miniapps/spde/ParaView
|
||||
|
||||
# Unit test binary and outputs
|
||||
tests/unit/output_meshes
|
||||
tests/unit/unit_tests
|
||||
@@ -363,8 +321,6 @@ tests/unit/tmop_pa_tests_*
|
||||
tests/unit/ptmop_pa_tests_*
|
||||
tests/unit/ceed_tests
|
||||
tests/unit/debug_device_tests
|
||||
tests/unit/parallel_in_serial.mesh
|
||||
tests/unit/parallel_in_serial.gf
|
||||
|
||||
# Benchmark binaries
|
||||
tests/benchmarks/bench_ceed
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -22,10 +22,12 @@
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
@@ -55,10 +57,12 @@
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -47,10 +47,12 @@ setup_baseline:
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -35,11 +35,13 @@ setup:
|
||||
(
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/mfem-data.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the
|
||||
# try every 5 seconds; we may want to add a counter for the number of
|
||||
# try to get an exclusive lock on fd 9 (mfem-data.lock) repeating the try
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/mfem-data.lock'"
|
||||
date
|
||||
@@ -67,10 +69,12 @@ setup:
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,14 +14,14 @@ stages:
|
||||
- build_and_test
|
||||
- report
|
||||
|
||||
opt_mpi_cuda_xl_16_1_1_12:
|
||||
opt_mpi_cuda_xl_16_1_1_8:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70"
|
||||
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
opt_mpi_cuda_hypre_cuda_xl:
|
||||
variables:
|
||||
SPEC: "%xl@16.1.1.12 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
|
||||
SPEC: "%xl@16.1.1.8 +mpi +cuda cuda_arch=70 ^hypre+cuda~shared cuda_arch=70"
|
||||
extends: .build_and_test_on_lassen
|
||||
|
||||
# Jobs report
|
||||
|
||||
+11
-13
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -51,8 +51,6 @@ cleanup:
|
||||
script:
|
||||
- echo "BUILD_ROOT=${BUILD_ROOT}"
|
||||
- rm -rf "${BUILD_ROOT}" || true
|
||||
- echo "CI_PROJECT_DIR=${CI_PROJECT_DIR}"
|
||||
- make -C "${CI_PROJECT_DIR}" distclean
|
||||
|
||||
report_baseline:
|
||||
extends: [.on_quartz]
|
||||
@@ -68,10 +66,12 @@ report_baseline:
|
||||
date
|
||||
echo "Waiting to acquire lock on '$PWD/autotest.lock' ..."
|
||||
# try to get an exclusive lock on fd 9 (autotest.lock) repeating the try
|
||||
# every 5 seconds; we may want to add a counter for the number of
|
||||
# every 5 seconds; simply using no timeout, i.e. 'flock 9', causes the
|
||||
# command to hang indefinitely sometimes, so we use the timeout & retry
|
||||
# as a workaround; we may want to add a counter for the number of
|
||||
# retries to interrupt a potential infinite loop
|
||||
while ! flock -n 9; do
|
||||
sleep 5
|
||||
while ! flock -w 5 9; do
|
||||
true
|
||||
done
|
||||
echo "Acquired lock on '$PWD/autotest.lock'"
|
||||
date
|
||||
@@ -82,20 +82,18 @@ report_baseline:
|
||||
rundir="${MACHINE_NAME}/$(date +%Y-%m-%d)-gitlab-${BASELINE_TEST}-${CI_COMMIT_REF_SLUG}"
|
||||
rundir=$(${CI_PROJECT_DIR}/.gitlab/scripts/safe_create_rundir ${rundir})
|
||||
cp ${CI_PROJECT_DIR}/${ARTIFACTS_DIR}/* ${rundir}
|
||||
# We create an autotest-email.html file, because that's how we signal that there was a diff (temporary).
|
||||
if [[ -f ${rundir}/${BASELINE_TEST}.err ]]; then
|
||||
cp ${rundir}/${BASELINE_TEST}.err ${rundir}/autotest-email.html
|
||||
fi
|
||||
printf "%s\n" "" "Pipeline URL:" "$CI_PIPELINE_URL" \
|
||||
>> ${rundir}/pipeline.txt
|
||||
# We create an autotest-email.html file, because that's how we signal
|
||||
# that there was an error / diff (temporary).
|
||||
if [[ -f ${rundir}/${BASELINE_TEST}.err ]] || \
|
||||
[[ -f ${rundir}/${BASELINE_TEST}-${SYS_TYPE}.diff ]]; then
|
||||
cp ${rundir}/pipeline.txt ${rundir}/autotest-email.html
|
||||
fi
|
||||
msg="GitLab CI log for ${BASELINE_TEST} on ${MACHINE_NAME} ($(date +%Y-%m-%d))"
|
||||
if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
|
||||
git push origin master
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -27,39 +27,44 @@ allocate_resource:
|
||||
timeout: 6h
|
||||
|
||||
# GitLab jobs for the Quartz machine at LLNL
|
||||
debug_ser_gcc_10:
|
||||
debug_ser_gcc_4_9_3:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +debug~mpi"
|
||||
SPEC: "%gcc@4.9.3 +debug~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
debug_par_gcc_10:
|
||||
debug_ser_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +debug+mpi"
|
||||
SPEC: "%gcc@6.1.0 +debug~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_ser_gcc_10:
|
||||
debug_par_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 ~mpi"
|
||||
SPEC: "%gcc@6.1.0 +debug+mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10:
|
||||
opt_ser_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1"
|
||||
SPEC: "%gcc@6.1.0 ~mpi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_sundials:
|
||||
opt_par_gcc_6_1_0:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +sundials"
|
||||
SPEC: "%gcc@6.1.0"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_petsc:
|
||||
opt_par_gcc_6_1_0_sundials:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +petsc ^petsc+mumps~superlu-dist"
|
||||
SPEC: "%gcc@6.1.0 +sundials"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_10_pumi:
|
||||
opt_par_gcc_6_1_0_petsc:
|
||||
variables:
|
||||
SPEC: "%gcc@10.3.1 +pumi"
|
||||
SPEC: "%gcc@6.1.0 +petsc ^petsc+mumps~superlu-dist"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
opt_par_gcc_6_1_0_pumi:
|
||||
variables:
|
||||
SPEC: "%gcc@6.1.0 +pumi"
|
||||
extends: .build_and_test_on_quartz
|
||||
|
||||
# Release
|
||||
|
||||
+29
-16
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -42,34 +42,47 @@ fi
|
||||
# post
|
||||
mkdir ${artifacts_path}
|
||||
|
||||
status=0
|
||||
if [[ -f ${BASELINE_TEST}.out ]]; then
|
||||
cp ${BASELINE_TEST}.out ${artifacts_path}
|
||||
fi
|
||||
if [[ -s ${glob_err} ]]; then
|
||||
echo "ERROR during ${BASELINE_TEST} execution"
|
||||
echo "Here is the ${glob_err} file content"
|
||||
if [[ -s ${glob_err} ]]
|
||||
then
|
||||
echo "ERROR during ${BASELINE_TEST} execution";
|
||||
echo "Here is the ${glob_err} file content";
|
||||
cat ${glob_err}
|
||||
cp ${glob_err} ${artifacts_path}/${glob_err}
|
||||
status=1
|
||||
fi
|
||||
if [[ -f ${base_patch} ]]; then
|
||||
exit 1;
|
||||
elif [[ ! -f ${base_patch} && ! -f ${base_out} ]]
|
||||
then
|
||||
echo "Something went WRONG in ${BASELINE_TEST}:";
|
||||
echo "Either ${base_patch} or ${base_out} should exists";
|
||||
exit 1;
|
||||
elif [[ -f ${base_patch} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, patch generated"
|
||||
cp ${base_patch} ${artifacts_path}/${base_patch}
|
||||
elif [[ -f ${base_out} ]]; then
|
||||
elif [[ -f ${base_out} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Differences found, replacement file generated"
|
||||
cp ${base_out} ${artifacts_path}/${base_out}
|
||||
fi
|
||||
|
||||
if [[ -f ${BASELINE_TEST}.out ]]; then
|
||||
cp ${BASELINE_TEST}.out ${artifacts_path}
|
||||
fi
|
||||
|
||||
# base_diff won't even exist if there is no difference.
|
||||
if [[ -f ${base_diff} ]]; then
|
||||
if [[ -f ${base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: Relevant differences (filtered diff) ..."
|
||||
cat ${base_diff}
|
||||
cp ${base_diff} ${artifacts_path}/${base_diff}
|
||||
status=1
|
||||
# We create a .err file, because that's how we signal that there was a diff.
|
||||
cp ${base_diff} ${artifacts_path}/gitlab-${BASELINE_TEST}-${MACHINE_NAME}.err
|
||||
fi
|
||||
if [[ $status -eq 0 ]]; then
|
||||
|
||||
if [[ ! -s ${base_diff} ]]
|
||||
then
|
||||
echo "${BASELINE_TEST}: PASSED"
|
||||
true
|
||||
else
|
||||
echo "${BASELINE_TEST}: FAILED"
|
||||
false
|
||||
fi
|
||||
exit $status
|
||||
|
||||
@@ -1,41 +0,0 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Try to push to the remote 5 times. If the push fails, and the local and remote
|
||||
# have diverged, then pull from the remote to merge changes, and try pushing
|
||||
# again. If some other failure happens
|
||||
for i in {1..5}; do
|
||||
git push origin master && exit 0
|
||||
# Wait for 20 seconds in case someone else is pushing to the remote
|
||||
# concurrently
|
||||
sleep 20
|
||||
# Fetch any updates from the remote
|
||||
git remote update
|
||||
# Get the latest commit on the local branch
|
||||
LOCAL=$(git rev-parse @)
|
||||
# Get the latest commit on the remote
|
||||
REMOTE=$(git rev-parse @{u})
|
||||
# Get the common ancestor
|
||||
BASE=$(git merge-base @ @{u})
|
||||
# Have the local and remote diverged?
|
||||
if [[ $LOCAL != $REMOTE && $LOCAL != $BASE && $REMOTE != $BASE ]]; then
|
||||
git pull
|
||||
if [[ $? == 0 ]]; then
|
||||
continue
|
||||
else
|
||||
exit 1 # Something else went wrong trying to pull
|
||||
fi
|
||||
fi
|
||||
done
|
||||
|
||||
exit 1 # Did not succeed in 5 attempts
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -32,7 +32,7 @@ if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
|
||||
git push origin master
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -29,7 +29,7 @@ if [[ "$AUTOTEST_COMMIT" != "NO" ]]; then
|
||||
git pull && \
|
||||
git add ${rundir} && \
|
||||
git commit -m "${msg}" && \
|
||||
${CI_PROJECT_DIR}/.gitlab/scripts/git_try_to_push
|
||||
git push origin master
|
||||
else
|
||||
for file in ${rundir}/*; do
|
||||
echo "------------------------------"
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -8,212 +8,31 @@
|
||||
https://mfem.org
|
||||
|
||||
|
||||
Version 4.5.3 (development)
|
||||
Version 4.4.1 (development)
|
||||
===========================
|
||||
- Added curve interpolation method for NURBS.
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
- Added a new example code, Example 36/36p, to demonstrate the solution of
|
||||
the obstacle problem with a new finite element method.
|
||||
|
||||
- Added a new miniapp, Mesh Quality, for evaluating mesh quality using size,
|
||||
skewness, and aspect-ratio computed from the Jacobian of the transformation.
|
||||
|
||||
- Added a new miniapp for interface and boundary fitting to implicit domains
|
||||
defined using level-set functions. See miniapps/meshing/pmesh-fitting.cpp
|
||||
|
||||
- Added new Discontinuous Petrov-Galerkin (DPG) miniapp which includes serial
|
||||
and parallel examples for diffusion, convection-diffusion, acoustics and
|
||||
Maxwell equations. The miniapp includes new classes such as (Par)DPGWeakForm,
|
||||
(Par)ComplexDPGWeakForm and (Complex)BlockStaticCondensation. Three new
|
||||
integrators are added in support of DPG systems: TraceIntegrator,
|
||||
NormalTraceIntegrator and TangentTraceIntegrator.
|
||||
|
||||
- Added new SubMesh examples demonstrating source terms and boundary conditions
|
||||
transferred from SubMesh objects.
|
||||
|
||||
- Added a miniapp for interpolation of NURBS.
|
||||
|
||||
- Added a new H(div) solvers miniapp in miniapps/hdiv-linear-solver,
|
||||
demonstrating the use of a matrix-free saddle-point solver methodology,
|
||||
suitable for high-order discretizations and for GPU acceleration. Examples
|
||||
illustrating the solution of Darcy and grad-div problems are included.
|
||||
|
||||
- Added a random refinement option to the mesh-explorer miniapp to assist users
|
||||
in experimenting with nonconforming meshes.
|
||||
|
||||
- Moved the distance solver methods from miniapps/shifted to miniapps/common.
|
||||
|
||||
- Added a new parallel LOR transfer miniapp, miniapps/tools/plor-transfer, which
|
||||
mirrors the functionality of the serial LOR transfer miniapp,
|
||||
miniapps/tools/lor-transfer
|
||||
|
||||
Meshing improvements
|
||||
--------------------
|
||||
- Added support for free connectivity of NURBS patches allowing for more complex
|
||||
patch configurations such as C-meshes. This is demonstrated in a new NURBS
|
||||
miniapp.
|
||||
|
||||
- The edge to knot map for NURBS meshes can be determined automatically. It is no
|
||||
longer needed to specify this in the NURBS mesh. A mesh in the NURBS miniapp
|
||||
demonstrates this.
|
||||
|
||||
- Added new methods in the Mesh class to set and get attributes on NURBS patches
|
||||
and patch boundaries.
|
||||
|
||||
- Added HIP support to the SUNDIALS interface.
|
||||
|
||||
- TMOP improvement: added asymptotically-balanced compound metrics 90, 94, 328,
|
||||
338. Added the tmop-metric-magnitude tool for tracking how metrics change
|
||||
under geometric perturbations.
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Face restriction operators for Nedelec and Raviart-Thomas finite element
|
||||
spaces are now supported through the ConformingFaceRestriction class.
|
||||
|
||||
- SubMesh and ParSubMesh have been extended to support the transfer of
|
||||
Nedelec and Raviart-Thomas finite element spaces.
|
||||
|
||||
- VectorFEBoundaryFluxLFIntegrator is now supported on device/GPU.
|
||||
|
||||
- Added support for partial assembly on NURBS patches and NURBS patch sparse
|
||||
matrix assembly. Patch matrix assembly includes the option to use reduced
|
||||
approximate integration rules, computed by the newly implemented non-negative
|
||||
least-squares (NNLS) solver.
|
||||
|
||||
- Added support for p-refined meshes in FindPointsGSLIB.
|
||||
|
||||
- Support for parallel transfer of H1 fields using the low-order refined (LOR)
|
||||
transfer operators in L2ProjectionGridTransfer
|
||||
|
||||
Linear and nonlinear solvers
|
||||
----------------------------
|
||||
- Updated interface to MUMPS direct solver to support multiple right-hand
|
||||
sides, block low-rank compression, builds using 64-bit integers, and other
|
||||
improvements.
|
||||
|
||||
- Added an interface to the MKL Pardiso sparse direct solver developed by Intel.
|
||||
This interface provides a serial (OpenMP shared memory) version of Pardiso for
|
||||
use with SparseMatrix. This complements the existing parallel (MPI distributed
|
||||
memory) version already available through the CPardiso MFEM integration.
|
||||
|
||||
Integrations, testing and documentation
|
||||
---------------------------------------
|
||||
- Added an address sanitizer GitHub action for a serial build/test on Ubuntu,
|
||||
based on Clang/LLVM (https://clang.llvm.org/docs/AddressSanitizer.html).
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- Improved lambda body debugging with the addition of mfem::forall functions.
|
||||
These functions can take the place of the MFEM_FORALL macros, which have been
|
||||
preserved for backwards compatibility.
|
||||
|
||||
- Reorganized files for bilinear form, linear form, and nonlinear form integrators
|
||||
in the fem/integ/ subdirectory.
|
||||
|
||||
|
||||
Version 4.5.2, released on March 23, 2023
|
||||
=========================================
|
||||
|
||||
- Added support for pyramids in non-conforming meshes. Currently only isotropic
|
||||
refinement is supported in this case.
|
||||
|
||||
- Removed the support for the Mesquite toolkit. We recommend using MFEM's TMOP
|
||||
functionality instead for mesh optimization. See the mesh-optimizer miniapp.
|
||||
|
||||
- Added a fast normalization-based distance solver, see the Distance miniapp
|
||||
in the miniapps/shifted/ directory.
|
||||
|
||||
- Added a new meshing miniapp, Reflector, which reflects a high-order or NURBS
|
||||
hexahedral mesh about a plane.
|
||||
|
||||
- Updated logic in FindPointsGSLIB to ignore points found near (but outside) the
|
||||
domain boundary.
|
||||
|
||||
- Added an option to auto-balance compound TMOP metrics.
|
||||
|
||||
- Fixed a bug in TMOP metric 301.
|
||||
|
||||
- When using discontinuous (L2) spaces, use local (element-wise) L2 projection
|
||||
as the coarsening operator for non-conforming AMR meshes.
|
||||
|
||||
- Added support for GridFunction::GetGradients() and GetVectorGradient() on
|
||||
face-neighbor elements.
|
||||
|
||||
- Added support for pyramids in Gmsh meshes.
|
||||
|
||||
- The Mesh Explorer miniapp can now save mesh files in the VisIt or ParaView
|
||||
formats using the corresponding DataCollection. See option 'D' in the menu.
|
||||
|
||||
- VisItDataCollection now correctly handles data collection names containing
|
||||
underscores.
|
||||
|
||||
- Added support for shared Windows builds with MSVC through CMake.
|
||||
Developers note: this enhancement is facilitated by the addition of the macro
|
||||
MFEM_EXPORT, see config.hpp for more details on its usage.
|
||||
|
||||
- The following integrations have updated minimum version requirements:
|
||||
* RAJA >= 2022.10.3
|
||||
|
||||
API changes
|
||||
-----------
|
||||
- The implicit cast methods of class Vector to 'double *' and 'const double *'
|
||||
have been deprecated and generate deprecation warnings if used. They will be
|
||||
removed in a future release.
|
||||
|
||||
- The methods Mesh::GetFaceBaseGeometry and Mesh::GetFaceGeometryType have been
|
||||
deprecated, and Mesh::GetFaceGeometry (which provides identical functionality)
|
||||
should be used instead.
|
||||
|
||||
- VisItDataCollection::SetPadDigits() no longer alters the number of digits
|
||||
used to represent the MPI rank because VisIt seems to require 6 digits.
|
||||
This parameter can still be explicitly overridden with SetPadDigitsRank().
|
||||
|
||||
|
||||
Version 4.5, released on October 22, 2022
|
||||
=========================================
|
||||
|
||||
Meshing improvements
|
||||
--------------------
|
||||
- Added new SubMesh and ParSubMesh classes that can be used to extract a subset
|
||||
of a given Mesh. These classes have the same functionality as Mesh and ParMesh
|
||||
and work with all existing MFEM interfaces like finite element spaces etc.
|
||||
|
||||
- Added a method, ParMesh::GetSerialMesh(), that reconstructs a partitioned
|
||||
parallel mesh on a given single rank. Also, added ParMesh::PrintAsSerial(),
|
||||
which saves the reconstructed serial mesh to a C++ stream on rank 0.
|
||||
|
||||
- Added more 3D TMOP metrics, as well as specialized metrics for mesh
|
||||
untangling and worst-case quality improvement.
|
||||
|
||||
- Added a new method, Mesh::NodesUpdated, which should be called after the mesh
|
||||
node coordinates have changed, e.g. after the mesh has moved. This is
|
||||
necessary, for example, with device assembly of linear and bilinear forms.
|
||||
|
||||
- Added support for mixed meshes and pyramids in GSLIB-FindPoints.
|
||||
|
||||
Discretization improvements
|
||||
---------------------------
|
||||
- Added support for assembling low-order-refined matrices using a GPU-enabled
|
||||
"batched" algorithm. The lor_solvers and plor_solvers now fully support GPU
|
||||
acceleration.
|
||||
|
||||
- Added support for partial assembly and fully matrix-free operators on mixed
|
||||
meshes (different element types and p-adaptivity) through libCEED, including
|
||||
device acceleration, e.g. with NVIDIA and AMD GPUs. The p-adaptivity is
|
||||
currently limited by MFEM capabilities, i.e. 2D serial meshes. All mixed
|
||||
element topologies are supported in serial and parallel: segment, triangle,
|
||||
square, tetrahedron, cube, prism, and pyramid.
|
||||
|
||||
- Added full assembly and device support for several LinearForm integrators:
|
||||
* DomainLF: (f, v)
|
||||
* VectorDomainLF: ((f1,...,fn), (v1,...,vn))
|
||||
* DomainLFGrad: (f, grad(v))
|
||||
* VectorDomainLFGrad: ((f1x,f1y,f1z,...,fnx,fny,fnz), grad(v1,...,vn))
|
||||
The device assembly of linear forms has to be explicitly enabled by calling
|
||||
LinearForm::UseFastAssembly(true), otherwise the legacy linear form assembly
|
||||
is used by default.
|
||||
|
||||
- Added support for assembling low-order-refined matrices using a GPU-enabled
|
||||
"batched" algorithm. The lor_solvers and plor_solvers now fully support GPU
|
||||
acceleration with arbitrary user-supplied coefficients.
|
||||
|
||||
- Added a new class FaceQuadratureSpace that allows for the construction of
|
||||
QuadratureFunctions on the interior or boundary faces of a mesh.
|
||||
|
||||
- Added a class CoefficientVector for efficient access of variable coefficient
|
||||
values at quadrature points (in particular for GPU/device kernels).
|
||||
|
||||
- Added WhiteGaussianNoiseDomainLFIntegrator: a LinearFormIntegrator class for
|
||||
spatial Gaussian white noise.
|
||||
@@ -221,25 +40,8 @@ Discretization improvements
|
||||
- Added a new Zienkiewicz-Zhu patch recovery-based a posteriori error estimator.
|
||||
See fem/estimators.hpp.
|
||||
|
||||
- Various fixes and improvements in LinearFormExtension.
|
||||
|
||||
Linear and nonlinear solvers
|
||||
----------------------------
|
||||
- Added a new class DGMassInverse that performs a local element-wise CG
|
||||
iteration to solve systems involving the discontinuous Galerkin mass matrix,
|
||||
including support for device/GPU acceleration.
|
||||
|
||||
- Added more flexibility to the constrained solver classes:
|
||||
* PenaltyConstrainedSolver now allows for a vector of penalty parameters
|
||||
(necessary for penalty contact)
|
||||
* PenaltyConstrainedSolver and EliminationSolver can use GMRES or PCG
|
||||
* All constraint solver classes can take a user-defined preconditioner
|
||||
|
||||
- Added functions to toggle additional options for the SuperLU_Dist and Hypre
|
||||
preconditioners (ParaSails, Euclid, ILU).
|
||||
|
||||
- Added boundary elimination with device support for `SparseMatrix` and
|
||||
`HypreParMatrix`.
|
||||
|
||||
New and updated examples and miniapps
|
||||
-------------------------------------
|
||||
@@ -249,28 +51,12 @@ New and updated examples and miniapps
|
||||
automatic differentiation tools like a native dual number implementation or a
|
||||
third party library such as Enzyme. See miniapps/elasticity for more details.
|
||||
|
||||
- Added example for body-fitted volumetric and shape integration using the
|
||||
Algoim library in miniapps/shifted.
|
||||
|
||||
- Add a new example code, Example 33/33p, to demonstrate the solution of
|
||||
spectral fractional PDEs with MFEM.
|
||||
|
||||
Integrations, testing and documentation
|
||||
---------------------------------------
|
||||
- Added a Dockerfile for a simple MFEM container, see config/docker/README.md.
|
||||
More sophisticated developer containers are available in the new repo
|
||||
https://github.com/mfem/containers.
|
||||
|
||||
- Added support for the LLVM-based automatic differentiation tool Enzyme, see
|
||||
https://github.com/EnzymeAD/Enzyme. Build system flags and a convenience
|
||||
header are provided. The functionality and interaction are demonstrated in a
|
||||
new miniapp in miniapps/elasticity.
|
||||
|
||||
- Added support for partial assembly and fully matrix-free operators on mixed
|
||||
meshes (different element types and p-adaptivity) through libCEED, including
|
||||
device acceleration, e.g. with NVIDIA and AMD GPUs. The p-adaptivity is
|
||||
currently limited to 2D serial meshes. All mixed element topologies are
|
||||
supported in both serial and parallel.
|
||||
|
||||
- Added support for ParMoonolith, https://bitbucket.org/zulianp/par_moonolith,
|
||||
which provides parallel non-conforming, non-matching, variational, volumetric
|
||||
@@ -278,40 +64,29 @@ Integrations, testing and documentation
|
||||
between arbitrarily distributed and unrelated finite element meshes in a
|
||||
variationally consistent way.
|
||||
|
||||
- Fully encapsulated SUNDIALS `N_Vector` object within the `SundialsNVector`
|
||||
class by removing deprecated (e.g. `HypreParVector::ToNVector`) and
|
||||
non-deprecated (e.g. `Vector::ToNVector`) functions in other classes.
|
||||
- Added support for the LLVM-based automatic differentiation tool Enzyme, see
|
||||
https://github.com/EnzymeAD/Enzyme. Build system flags and a convenience
|
||||
header are provided. The functionality and interaction are demonstrated in a
|
||||
new miniapp in miniapps/elasticity.
|
||||
|
||||
- New benchmark for the different assembly levels inspired by the CEED
|
||||
Bake-Off Problems, see tests/benchmarks/bench_assembly_levels.cpp.
|
||||
- Added example for body-fitted volumetric and shape integration using the
|
||||
Algoim library.
|
||||
|
||||
- Added Windows 2022 CI testing with GitHub actions.
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- The method SparseMatrix::EnsureMultTranspose() is now automatically called
|
||||
by the methods AddMultTranspose(), MultTranspose(), and AbsMultTranspose().
|
||||
Added a method with the same name to class HypreParMatrix which is also called
|
||||
automatically by the HypreParMatrix::MultTranspose() methods.
|
||||
- Various other simplifications, extensions, and bugfixes in the code.
|
||||
|
||||
- Updated various MemoryUsage methods to return 'std::size_t' instead of 'long'
|
||||
since the latter is 32-bit in Win64 builds.
|
||||
|
||||
- Added boundary elimination with device support for `SparseMatrix` and
|
||||
`HypreParMatrix`.
|
||||
|
||||
- When using `AssemblyLevel::FULL`, `FABilinearFormExtension::FormSystemMatrix`
|
||||
outputs an `OperatorHandle` containing a `SparseMatrix` in serial, and an
|
||||
`HypreParMatrix` in parallel (instead of a `ConstrainedOperator`).
|
||||
|
||||
- In various places in the library, replace the use of 'long' with 'long long'
|
||||
to better support Win64 builds where 'long' is 32-bit and 'long long' is
|
||||
64-bit. On Linux and MacOS, both types are typically 64-bit.
|
||||
|
||||
- The behavior of GridFunction::GetTrueVector() has been changed to not return
|
||||
an empty true vector.
|
||||
|
||||
- Added support for ordering search points byVDIM in FindPointsGSLIB.
|
||||
|
||||
- Various other simplifications, extensions, and bugfixes in the code.
|
||||
|
||||
- Added TMOP metrics for mesh untangling and worst-case quality improvement.
|
||||
|
||||
Version 4.4, released on March 21, 2022
|
||||
=======================================
|
||||
@@ -344,6 +119,11 @@ Meshing improvements
|
||||
- Added a simpler interface to access mesh face information, see FaceInformation
|
||||
and GetFaceInformation in the Mesh class.
|
||||
|
||||
- Added the method ParMesh::GetSerialMesh() that reconstructs a partitioned
|
||||
parallel mesh on a given single rank. Also, added the method
|
||||
ParMesh::PrintAsSerial() that saves the reconstructed serial mesh to a C++
|
||||
stream on rank 0.
|
||||
|
||||
- Gmsh meshes where all elements have zero physical tag (the default Gmsh output
|
||||
format if no physical groups are defined) are now successfully loaded, and
|
||||
elements are reassigned attribute number 1.
|
||||
@@ -433,6 +213,9 @@ Integrations, testing and documentation
|
||||
- Switched from Artistic Style (astyle) version 2.05.1 to version 3.1 for code
|
||||
formatting. See the "make style" target.
|
||||
|
||||
- New benchmark for the different assembly levels inspired by the CEED
|
||||
Bake-Off Problems, see tests/benchmarks/bench_assembly_levels.cpp.
|
||||
|
||||
Miscellaneous
|
||||
-------------
|
||||
- Added a simple singleton class, Mpi, as a replacement for MPI_Session. New
|
||||
@@ -443,6 +226,13 @@ Miscellaneous
|
||||
|
||||
- Fixed several MinGW build issues on Windows.
|
||||
|
||||
- In various places in the library, replace the use of 'long' with 'long long'
|
||||
to better support Win64 builds where 'long' is 32-bit and 'long long' is
|
||||
64-bit. On Linux and MacOS, both types are typically 64-bit.
|
||||
|
||||
- Update various "MemoryUsage" methods to return 'std::size_t' instead of 'long'
|
||||
since the latter is 32-bit in Win64 builds.
|
||||
|
||||
- Added 'double' atomicAdd implementation for previous versions of CUDA.
|
||||
|
||||
- HypreParVector and Vector now support C++ move semantics, and the copy
|
||||
|
||||
+57
-113
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -10,10 +10,7 @@
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# The variable CMAKE_CXX_STANDARD and related were introduced in CMake v3.1
|
||||
# Version 3.8 fixes the handling of CMAKE_CXX_STANDARD for try_compile.
|
||||
# Version 3.8 or newer is required for direct CUDA support.
|
||||
cmake_minimum_required(VERSION 3.8)
|
||||
message(STATUS "CMake version: ${CMAKE_VERSION}")
|
||||
cmake_minimum_required(VERSION 3.1)
|
||||
set(USER_CONFIG "${CMAKE_CURRENT_SOURCE_DIR}/config/user.cmake" CACHE PATH
|
||||
"Path to optional user configuration file.")
|
||||
|
||||
@@ -25,11 +22,8 @@ set(CMAKE_CXX_EXTENSIONS OFF)
|
||||
# Load user settings before the defaults - this way the defaults will not
|
||||
# overwrite the user set options. If the user has not set all options, we still
|
||||
# have the defaults.
|
||||
include("${USER_CONFIG}" OPTIONAL RESULT_VARIABLE USER_CONFIG_LOADED)
|
||||
if (USER_CONFIG_LOADED)
|
||||
set(USER_CONFIG_LOADED "LOADED")
|
||||
endif()
|
||||
message(STATUS "Loading USER_CONFIG = ${USER_CONFIG} (${USER_CONFIG_LOADED})")
|
||||
message(STATUS "(optional) USER_CONFIG = ${USER_CONFIG}")
|
||||
include("${USER_CONFIG}" OPTIONAL)
|
||||
include("${CMAKE_CURRENT_SOURCE_DIR}/config/defaults.cmake")
|
||||
|
||||
# Allow overwriting of the compiler by setting CXX/MPICXX on the command line or
|
||||
@@ -57,7 +51,7 @@ project(mfem NONE)
|
||||
# Current version of MFEM, see also `makefile`.
|
||||
# mfem_VERSION = (string)
|
||||
# MFEM_VERSION = (int) [automatically derived from mfem_VERSION]
|
||||
set(${PROJECT_NAME}_VERSION 4.5.3)
|
||||
set(${PROJECT_NAME}_VERSION 4.4.1)
|
||||
|
||||
# Prohibit in-source build
|
||||
if (${PROJECT_SOURCE_DIR} STREQUAL ${PROJECT_BINARY_DIR})
|
||||
@@ -72,7 +66,8 @@ set(XSDK_ENABLE_C OFF)
|
||||
set(XSDK_ENABLE_Fortran OFF)
|
||||
|
||||
# Check if we need to enable C or Fortran.
|
||||
if (MFEM_USE_CONDUIT OR
|
||||
if (CMAKE_VERSION VERSION_LESS 3.2 OR
|
||||
MFEM_USE_CONDUIT OR
|
||||
MFEM_USE_SIDRE OR
|
||||
MFEM_USE_PETSC)
|
||||
# This seems to be needed by:
|
||||
@@ -82,17 +77,11 @@ if (MFEM_USE_CONDUIT OR
|
||||
# * find_package(PETSc REQUIRED)
|
||||
set(XSDK_ENABLE_C ON)
|
||||
endif()
|
||||
if (MFEM_USE_STRUMPACK OR MFEM_USE_MUMPS)
|
||||
if (MFEM_USE_STRUMPACK)
|
||||
# Just needed to find the MPI_Fortran libraries to link with
|
||||
set(XSDK_ENABLE_Fortran ON)
|
||||
endif()
|
||||
# SUNDIALS, STRUMPACK, Ginkgo, RAJA and Umpire require C++14:
|
||||
if ((MFEM_USE_SUNDIALS OR
|
||||
MFEM_USE_STRUMPACK OR
|
||||
MFEM_USE_GINKGO OR
|
||||
MFEM_USE_RAJA OR
|
||||
MFEM_USE_UMPIRE) AND
|
||||
("${CMAKE_CXX_STANDARD}" LESS "14"))
|
||||
if (MFEM_USE_GINKGO AND ("${CMAKE_CXX_STANDARD}" LESS "14"))
|
||||
set(CMAKE_CXX_STANDARD 14)
|
||||
endif()
|
||||
|
||||
@@ -110,12 +99,17 @@ if (MFEM_USE_CUDA)
|
||||
if (MFEM_USE_HIP)
|
||||
message(FATAL_ERROR " *** MFEM_USE_HIP cannot be combined with MFEM_USE_CUDA.")
|
||||
endif()
|
||||
# MFEM_USE_CUDA requires CMake 3.8 or newer (for direct CUDA support)
|
||||
cmake_minimum_required(VERSION 3.8 FATAL_ERROR)
|
||||
# Use ${CMAKE_CXX_COMPILER} as the cuda host compiler.
|
||||
if (NOT CMAKE_CUDA_HOST_COMPILER)
|
||||
set(CMAKE_CUDA_HOST_COMPILER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
enable_language(CUDA)
|
||||
set(CMAKE_CUDA_STANDARD ${CMAKE_CXX_STANDARD})
|
||||
set(CMAKE_CUDA_STANDARD 11)
|
||||
if (MFEM_USE_GINKGO)
|
||||
set(CMAKE_CUDA_STANDARD 14)
|
||||
endif()
|
||||
set(CMAKE_CUDA_STANDARD_REQUIRED ON)
|
||||
set(CMAKE_CUDA_EXTENSIONS OFF)
|
||||
set(CUDA_FLAGS "--expt-extended-lambda")
|
||||
@@ -138,11 +132,12 @@ if (MFEM_USE_CUDA)
|
||||
set(CUDA_FLAGS "-ccbin=${CMAKE_CXX_COMPILER} ${CUDA_FLAGS}")
|
||||
set(CMAKE_CUDA_HOST_LINK_LAUNCHER ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
set(CMAKE_CUDA_FLAGS ${CMAKE_CUDA_FLAGS} ${CUDA_FLAGS})
|
||||
set(CMAKE_CUDA_FLAGS "${CUDA_FLAGS}" CACHE STRING
|
||||
"CUDA flags set for MFEM" FORCE)
|
||||
set(CUSPARSE_FOUND TRUE)
|
||||
set(CUSPARSE_LIBRARIES "cusparse")
|
||||
set(CUBLAS_FOUND TRUE)
|
||||
set(CUBLAS_LIBRARIES "cublas")
|
||||
set(CUSBLAS_LIBRARIES "cublas")
|
||||
endif()
|
||||
|
||||
if (XSDK_ENABLE_C)
|
||||
@@ -187,23 +182,6 @@ else()
|
||||
set(MFEM_DEBUG OFF)
|
||||
endif()
|
||||
|
||||
# Shared build on Windows
|
||||
if (WIN32 AND BUILD_SHARED_LIBS)
|
||||
# CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS works only with MSVC?
|
||||
set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON CACHE BOOL
|
||||
"Automatically export symbols for shared Windows DLL build")
|
||||
# Place all .dll and .exe files in the same sub-directory, 'bin/<config>', of
|
||||
# the build directory, so that the .exe files can find the .dll files at
|
||||
# runtime:
|
||||
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/bin")
|
||||
# Note: CMake tests are run from the build-tree sub-directory where the test
|
||||
# is defined, e.g. <build-dir>/tests/unit, so hard coded paths to meshes still
|
||||
# work fine.
|
||||
# Not strictly necessary:
|
||||
# set(CMAKE_LIBRARY_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
|
||||
# set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY "${CMAKE_BINARY_DIR}/lib")
|
||||
endif()
|
||||
|
||||
# AMD HIP
|
||||
if (MFEM_USE_HIP)
|
||||
if (HIP_ARCH)
|
||||
@@ -217,35 +195,15 @@ if (MFEM_USE_HIP)
|
||||
find_package(HIPSPARSE REQUIRED)
|
||||
endif()
|
||||
|
||||
# OpenMP
|
||||
if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
|
||||
if (NOT MFEM_THREAD_SAFE AND MFEM_USE_LEGACY_OPENMP)
|
||||
message(FATAL_ERROR " *** MFEM_USE_LEGACY_OPENMP requires MFEM_THREAD_SAFE=ON.")
|
||||
endif()
|
||||
find_package(OpenMP REQUIRED)
|
||||
set(OPENMP_LIBRARIES ${OpenMP_CXX_LIBRARIES})
|
||||
if(APPLE)
|
||||
# On macOS, the compiler needs additional help to find the <omp.h> header.
|
||||
# See issue #2642 for more information.
|
||||
set(OPENMP_INCLUDE_DIRS ${OpenMP_CXX_INCLUDE_DIRS})
|
||||
endif(APPLE)
|
||||
if (OPENMP_FOUND)
|
||||
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
|
||||
if (MFEM_USE_CUDA)
|
||||
set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcompiler=${OpenMP_CXX_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# MPI -> hypre; PETSc (optional)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MPI REQUIRED)
|
||||
set(MPI_CXX_INCLUDE_DIRS ${MPI_CXX_INCLUDE_PATH})
|
||||
if (MFEM_MPIEXEC)
|
||||
string(REPLACE " " ";" MPIEXEC ${MFEM_MPIEXEC})
|
||||
set(MPIEXEC ${MFEM_MPIEXEC})
|
||||
endif()
|
||||
if (MFEM_MPIEXEC_NP)
|
||||
string(REPLACE " " ";" MPIEXEC_NUMPROC_FLAG ${MFEM_MPIEXEC_NP})
|
||||
set(MPIEXEC_NUMPROC_FLAG ${MFEM_MPIEXEC_NP})
|
||||
endif()
|
||||
# Parallel MFEM depends on hypre
|
||||
find_package(HYPRE REQUIRED)
|
||||
@@ -302,6 +260,20 @@ if (MFEM_USE_LAPACK)
|
||||
find_package(LAPACK REQUIRED)
|
||||
endif()
|
||||
|
||||
# OpenMP
|
||||
if (MFEM_USE_OPENMP OR MFEM_USE_LEGACY_OPENMP)
|
||||
if (NOT MFEM_THREAD_SAFE AND MFEM_USE_LEGACY_OPENMP)
|
||||
message(FATAL_ERROR " *** MFEM_USE_LEGACY_OPENMP requires MFEM_THREAD_SAFE=ON.")
|
||||
endif()
|
||||
find_package(OpenMP REQUIRED)
|
||||
set(OPENMP_LIBRARIES ${OpenMP_CXX_LIBRARIES})
|
||||
if(APPLE)
|
||||
# On macOS, the compiler needs additional help to find the <omp.h> header.
|
||||
# See issue #2642 for more information.
|
||||
set(OPENMP_INCLUDE_DIRS ${OpenMP_CXX_INCLUDE_DIRS})
|
||||
endif(APPLE)
|
||||
endif()
|
||||
|
||||
# SuiteSparse (before SUNDIALS which may depend on KLU)
|
||||
if (MFEM_USE_SUITESPARSE)
|
||||
find_package(SuiteSparse REQUIRED
|
||||
@@ -317,12 +289,14 @@ if (MFEM_USE_SUNDIALS)
|
||||
if (MFEM_USE_CUDA)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Cuda)
|
||||
endif()
|
||||
if (MFEM_USE_HIP)
|
||||
list(APPEND SUNDIALS_COMPONENTS NVector_Hip)
|
||||
endif()
|
||||
find_package(SUNDIALS REQUIRED ${SUNDIALS_COMPONENTS})
|
||||
endif()
|
||||
|
||||
# Mesquite
|
||||
if (MFEM_USE_MESQUITE)
|
||||
find_package(Mesquite REQUIRED)
|
||||
endif()
|
||||
|
||||
# SuperLU_DIST can only be enabled in parallel
|
||||
if (MFEM_USE_SUPERLU)
|
||||
if (MFEM_USE_MPI)
|
||||
@@ -336,7 +310,6 @@ endif()
|
||||
if (MFEM_USE_MUMPS)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MUMPS REQUIRED mumps_common pord)
|
||||
set(MFEM_MUMPS_VERSION ${MUMPS_VERSION})
|
||||
else()
|
||||
message(FATAL_ERROR " *** MUMPS requires that MPI be enabled.")
|
||||
endif()
|
||||
@@ -470,18 +443,12 @@ if (MFEM_USE_ADIOS2)
|
||||
find_package(ADIOS2 REQUIRED)
|
||||
endif()
|
||||
|
||||
# MKL CPardiso
|
||||
if (MFEM_USE_MKL_CPARDISO)
|
||||
if (MFEM_USE_MPI)
|
||||
find_package(MKL_CPARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64 MKL_MPI_WRAPPER)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# MKL Pardiso
|
||||
if (MFEM_USE_MKL_PARDISO)
|
||||
find_package(MKL_PARDISO REQUIRED MKL_SEQUENTIAL MKL_LP64)
|
||||
endif()
|
||||
|
||||
# PARELAG
|
||||
if (MFEM_USE_PARELAG)
|
||||
find_package(PARELAG REQUIRED)
|
||||
@@ -510,29 +477,16 @@ if (NOT DEFINED MFEM_TIMER_TYPE)
|
||||
endif()
|
||||
endif()
|
||||
|
||||
# Without this, CMake 3.21.1 (and 3.20.2) run into CMake Errors like the following:
|
||||
# CMake Error at config/cmake/modules/MfemCmakeUtilities.cmake:60 (add_library):
|
||||
# Target "mfem" links to target "Threads::Threads" but the target was not
|
||||
# found. Perhaps a find_package() call is missing for an IMPORTED target, or
|
||||
# an ALIAS target is missing?
|
||||
# Call Stack (most recent call first):
|
||||
# CMakeLists.txt:474 (mfem_add_library)
|
||||
#
|
||||
# NOTE: We need to figure out which TPL library adds the dependency on
|
||||
# "Threads::Threads" and call the next line only when that TPL library is
|
||||
# enabled. -V. Dobrev
|
||||
find_package(Threads REQUIRED)
|
||||
|
||||
# List all possible libraries in order of dependencies.
|
||||
# [METIS < SuiteSparse]:
|
||||
# With newer versions of SuiteSparse which include METIS header using 64-bit
|
||||
# integers, the METIS header (with 32-bit indices, as used by mfem) needs to
|
||||
# be before SuiteSparse.
|
||||
set(MFEM_TPLS OPENMP HYPRE LAPACK BLAS SuperLUDist STRUMPACK METIS SuiteSparse
|
||||
SUNDIALS PETSC SLEPC MUMPS AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
|
||||
set(MFEM_TPLS OPENMP HYPRE BLAS LAPACK SuperLUDist METIS SuiteSparse SUNDIALS
|
||||
PETSC SLEPC MESQUITE MUMPS STRUMPACK AXOM FMS CONDUIT Ginkgo GNUTLS GSLIB
|
||||
NETCDF MPFR PUMI HIOP POSIXCLOCKS MFEMBacktrace ZLIB OCCA CEED RAJA UMPIRE
|
||||
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO MKL_PARDISO AMGX CALIPER CODIPACK
|
||||
BENCHMARK PARELAG MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
ADIOS2 CUBLAS CUSPARSE MKL_CPARDISO AMGX CALIPER CODIPACK BENCHMARK PARELAG
|
||||
MPI_CXX HIP HIPSPARSE MOONOLITH BLITZ ALGOIM ENZYME)
|
||||
|
||||
# Add all *_FOUND libraries in the variable TPL_LIBRARIES.
|
||||
set(TPL_LIBRARIES "")
|
||||
@@ -544,13 +498,18 @@ foreach(TPL IN LISTS MFEM_TPLS)
|
||||
list(APPEND TPL_INCLUDE_DIRS ${${TPL}_INCLUDE_DIRS})
|
||||
endif()
|
||||
endforeach(TPL)
|
||||
list(REVERSE TPL_LIBRARIES)
|
||||
list(REMOVE_DUPLICATES TPL_LIBRARIES)
|
||||
list(REVERSE TPL_LIBRARIES)
|
||||
list(REMOVE_DUPLICATES TPL_INCLUDE_DIRS)
|
||||
# message(STATUS "TPL_INCLUDE_DIRS = ${TPL_INCLUDE_DIRS}")
|
||||
|
||||
message(STATUS "MFEM shared library: BUILD_SHARED_LIBS = ${BUILD_SHARED_LIBS}")
|
||||
if (OPENMP_FOUND)
|
||||
message(STATUS "MFEM: using package OpenMP")
|
||||
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
|
||||
if (MFEM_USE_CUDA)
|
||||
set(CMAKE_CUDA_FLAGS "${CMAKE_CUDA_FLAGS} -Xcompiler=${OpenMP_CXX_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
message(STATUS "MFEM build type: CMAKE_BUILD_TYPE = ${CMAKE_BUILD_TYPE}")
|
||||
message(STATUS "MFEM version: v${MFEM_VERSION_STRING}")
|
||||
message(STATUS "MFEM git string: ${MFEM_GIT_STRING}")
|
||||
@@ -606,19 +565,7 @@ target_include_directories(mfem
|
||||
PUBLIC
|
||||
$<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}>
|
||||
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}>
|
||||
# The INSTALL_INTERFACE is handled below
|
||||
${TPL_INCLUDE_DIRS})
|
||||
if (MFEM_USE_MPI)
|
||||
if (MPI_CXX_COMPILE_FLAGS)
|
||||
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
|
||||
"${MPI_CXX_COMPILE_FLAGS}")
|
||||
target_compile_options(mfem PUBLIC ${MPI_CXX_COMPILE_ARGS})
|
||||
endif()
|
||||
if (MPI_CXX_LINK_FLAGS)
|
||||
target_link_libraries(mfem PUBLIC ${MPI_CXX_LINK_FLAGS})
|
||||
endif()
|
||||
endif()
|
||||
|
||||
set_target_properties(mfem PROPERTIES VERSION "${mfem_VERSION}")
|
||||
set_target_properties(mfem PROPERTIES SOVERSION "${mfem_VERSION}")
|
||||
|
||||
@@ -630,7 +577,6 @@ if (NOT ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}"))
|
||||
endif()
|
||||
|
||||
# Generate configuration file in the build directory: config/_config.hpp.
|
||||
set(MFEM_SHARED_BUILD ${BUILD_SHARED_LIBS})
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/cmake/config.hpp.in"
|
||||
"${PROJECT_BINARY_DIR}/config/_config.hpp")
|
||||
@@ -742,15 +688,13 @@ add_subdirectory(doc)
|
||||
message(STATUS "CMAKE_INSTALL_PREFIX = ${CMAKE_INSTALL_PREFIX}")
|
||||
set(INSTALL_INCLUDE_DIR include
|
||||
CACHE PATH "Relative path for installing header files.")
|
||||
set(INSTALL_BIN_DIR bin
|
||||
CACHE PATH "Relative path for installing the binaries.")
|
||||
set(INSTALL_LIB_DIR lib
|
||||
CACHE PATH "Relative path for installing the library.")
|
||||
# other options: "share/mfem/cmake", "lib/mfem/cmake"
|
||||
set(INSTALL_CMAKE_DIR lib/cmake/mfem
|
||||
CACHE PATH "Relative path for installing cmake config files.")
|
||||
|
||||
target_include_directories(mfem BEFORE
|
||||
target_include_directories(mfem
|
||||
PUBLIC
|
||||
$<INSTALL_INTERFACE:${INSTALL_INCLUDE_DIR}>)
|
||||
|
||||
@@ -762,9 +706,7 @@ set(CMAKE_INSTALL_DEFAULT_COMPONENT_NAME Development)
|
||||
# Install the library
|
||||
install(TARGETS ${PROJECT_NAME}
|
||||
EXPORT ${PROJECT_NAME_UC}Targets
|
||||
RUNTIME DESTINATION ${INSTALL_BIN_DIR}
|
||||
LIBRARY DESTINATION ${INSTALL_LIB_DIR}
|
||||
ARCHIVE DESTINATION ${INSTALL_LIB_DIR})
|
||||
DESTINATION ${INSTALL_LIB_DIR})
|
||||
|
||||
# Install the master headers
|
||||
foreach(Header mfem.hpp mfem-performance.hpp)
|
||||
@@ -802,8 +744,10 @@ endif()
|
||||
|
||||
# Install the configuration header files
|
||||
install(FILES ${PROJECT_BINARY_DIR}/config/_config.hpp
|
||||
${PROJECT_SOURCE_DIR}/config/config.hpp
|
||||
${PROJECT_SOURCE_DIR}/config/tconfig.hpp
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config
|
||||
RENAME config.hpp)
|
||||
|
||||
install(FILES ${PROJECT_SOURCE_DIR}/config/tconfig.hpp
|
||||
DESTINATION ${INSTALL_INCLUDE_DIR}/mfem/config)
|
||||
|
||||
# Package the whole thing up nicely
|
||||
|
||||
+3
-11
@@ -102,9 +102,7 @@ The MFEM source code has the following structure:
|
||||
.
|
||||
├── config
|
||||
│ ├── cmake
|
||||
│ ├── docker
|
||||
│ ├── githooks
|
||||
│ └── vcpkg
|
||||
│ └── githooks
|
||||
├── data
|
||||
├── doc
|
||||
├── examples
|
||||
@@ -113,7 +111,6 @@ The MFEM source code has the following structure:
|
||||
│ ├── ginkgo
|
||||
│ ├── hiop
|
||||
│ ├── jupyter
|
||||
│ ├── moonolith
|
||||
│ ├── petsc
|
||||
│ ├── pumi
|
||||
│ ├── sundials
|
||||
@@ -121,27 +118,22 @@ The MFEM source code has the following structure:
|
||||
├── fem
|
||||
│ ├── ceed
|
||||
│ ├── fe
|
||||
│ ├── integ
|
||||
│ ├── lor
|
||||
│ ├── moonolith
|
||||
│ ├── qinterp
|
||||
│ ├── moonolith
|
||||
│ └── tmop
|
||||
├── general
|
||||
├── linalg
|
||||
│ └── simd
|
||||
├── mesh
|
||||
│ └── submesh
|
||||
├── miniapps
|
||||
│ ├── adjoint
|
||||
│ ├── autodiff
|
||||
│ ├── common
|
||||
│ ├── electromagnetics
|
||||
│ ├── gslib
|
||||
│ ├── hdiv-linear-solver
|
||||
│ ├── hooke
|
||||
│ ├── meshing
|
||||
│ ├── mtop
|
||||
│ ├── multidomain
|
||||
│ ├── navier
|
||||
│ ├── nurbs
|
||||
│ ├── parelag
|
||||
@@ -211,7 +203,7 @@ device/host memory manager.
|
||||
- The main device-relevant classes and sources are:
|
||||
+ [`Device`](https://docs.mfem.org/html/device_8hpp.html)
|
||||
+ [`MemoryManager`](https://docs.mfem.org/html/mem_manager_8hpp.html)
|
||||
+ the [`mfem::forall`](https://docs.mfem.org/html/forall_8hpp.html) function
|
||||
+ the [`MFEM_FORALL`](https://docs.mfem.org/html/forall_8hpp.html) macro
|
||||
+ the [`cuda.hpp`](https://docs.mfem.org/html/cuda_8hpp.html) and [`occa.hpp`](https://docs.mfem.org/html/occa_8hpp.html) files
|
||||
|
||||
#### Utilities, building and documentation
|
||||
|
||||
@@ -7,10 +7,6 @@
|
||||
|
||||
https://mfem.org
|
||||
|
||||
This file provides a detailed description of how to build and install the MFEM
|
||||
library. For a simple build, see the step-by-step instructions on the website
|
||||
at https://mfem.org/building.
|
||||
|
||||
The MFEM library has a serial and an MPI-based parallel version, which largely
|
||||
share the same code base. The only prerequisite for building the serial version
|
||||
of MFEM is a (modern) C++ compiler, such as g++. The parallel version of MFEM
|
||||
@@ -20,11 +16,7 @@ requires an MPI C++ compiler, as well as the following external libraries:
|
||||
https://github.com/hypre-space/hypre
|
||||
|
||||
- METIS (a family of multilevel partitioning algorithms)
|
||||
https://github.com/mfem/tpls
|
||||
|
||||
Note: We recommend our mirror of metis-4.0.3/5.1.0 above because the METIS
|
||||
webpage, http://glaros.dtc.umn.edu/gkhome/metis/metis/overview, is often down
|
||||
and we don't support yet the new repo https://github.com/KarypisLab/METIS.
|
||||
http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
|
||||
|
||||
The hypre dependency can be downloaded as a tarball from GitHub or from the
|
||||
project webpage https://www.llnl.gov/casc/hypre. For example, the 2.24.0 release
|
||||
@@ -337,6 +329,10 @@ MFEM_USE_SUNDIALS = YES/NO
|
||||
library. When enabled, this option uses the SUNDIALS_* library options,
|
||||
see below.
|
||||
|
||||
MFEM_USE_MESQUITE = YES/NO
|
||||
Enable MFEM functionality based on the Mesquite library. When enabled, this
|
||||
option uses the MESQUITE_* library options, see below.
|
||||
|
||||
MFEM_USE_SUITESPARSE = YES/NO
|
||||
Enable MFEM functionality based on the SuiteSparse library. Currently, this
|
||||
option adds the classes UMFPackSolver and KLUSolver (both sparse serial
|
||||
@@ -476,10 +472,10 @@ MFEM_USE_CODIPACK = YES/NO
|
||||
www.scicomp.uni-kl.de/codi/
|
||||
|
||||
MFEM_USE_ALGOIM = YES/NO
|
||||
Enable the usage of Algoim - a collection of high-order accurate numerical
|
||||
methods and C++ algorithms for working with implicitly-defined geometry and
|
||||
level set methods. The Algoim library requires the Blitz++ library. The MFEM
|
||||
provides interface to Algoim v1. Thus, to check out the specific state use:
|
||||
Enable the usage of Algoim - a collection of high-order accurate numerical
|
||||
methods and C++ algorithms for working with implicitly-defined geometry and
|
||||
level set methods. The Algoim library requires the Blitz++ library. The MFEM
|
||||
provides interface to Algoim v1. Thus, to check out the specific state use:
|
||||
git checkout 9c9ca0ef094d8ab0390ed36367a1151b459bbe0a
|
||||
https://algoim.github.io
|
||||
|
||||
@@ -554,7 +550,7 @@ MFEM_USE_FMS = YES/NO
|
||||
Enables support for the FMS library which consists of the DataCollection
|
||||
sub-class mfem::FMSDataCollection for I/O in FMS formats, see the header file
|
||||
fem/fmsdatacollection.hpp. In addition, this option enables in-memory
|
||||
conversion routines between FMS's FmsDataCollection structure and MFEM's
|
||||
convetion routines between FMS's FmsDataCollection structure and MFEM's
|
||||
DataCollection class, see the header file fem/fmsconvert.hpp.
|
||||
|
||||
MFEM_USE_PARELAG = YES/NO
|
||||
@@ -601,7 +597,7 @@ The specific libraries and their options are:
|
||||
|
||||
- METIS, used when MFEM_USE_METIS = YES. If using METIS 5, set
|
||||
MFEM_USE_METIS_5 = YES (default is to use METIS 4).
|
||||
URL: https://github.com/mfem/tpls (MFEM mirror, see above)
|
||||
URL: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
|
||||
Options: METIS_OPT, METIS_LIB.
|
||||
Versions: METIS 4.0.3 or 5.1.0.
|
||||
|
||||
@@ -628,13 +624,14 @@ The specific libraries and their options are:
|
||||
both MPI and hypre.
|
||||
If MFEM_USE_CUDA is enabled, we expect that SUNDIALS is built with support
|
||||
for CUDA.
|
||||
If MFEM_USE_HIP is enabled, we expect that SUNDIALS is built with support
|
||||
for HIP.
|
||||
URL: http://computing.llnl.gov/projects/sundials/sundials-software
|
||||
URL: http://computation.llnl.gov/projects/sundials/sundials-software
|
||||
Options: SUNDIALS_OPT, SUNDIALS_LIB.
|
||||
Versions: SUNDIALS >= 5.0.0,
|
||||
SUNDIALS >= 5.4.0 for CUDA support, and
|
||||
SUNDIALS >= 5.7.0 for HIP support.
|
||||
Versions: SUNDIALS >= 5.0.0, SUNDIALS >= 5.4.0 for CUDA support.
|
||||
|
||||
- Mesquite (optional), used when MFEM_USE_MESQUITE = YES.
|
||||
URL: http://trilinos.org/oldsite/packages/mesquite
|
||||
Options: MESQUITE_OPT, MESQUITE_LIB.
|
||||
The Mesquite support is deprecated and will be removed in the future.
|
||||
|
||||
- SuiteSparse (optional), used when MFEM_USE_SUITESPARSE = YES.
|
||||
URL: http://faculty.cse.tamu.edu/davis/suitesparse.html
|
||||
@@ -757,12 +754,12 @@ The specific libraries and their options are:
|
||||
Options: GSLIB_OPT, GSLIB_LIB.
|
||||
Versions: GSLIB >= 1.0.7.
|
||||
|
||||
- ALGOIM (optional), used when MFEM_USE_ALGOIM=YES. The library provides only
|
||||
- ALGOIM (optional), used when MFE_USE_ALGOIM=YES. The library provides only
|
||||
headers so it just needs to be downloaded at the same level as MFEM. Download
|
||||
the specific version we use as:
|
||||
"git clone https://github.com/algoim/algoim.git;
|
||||
git checkout 9c9ca0ef094d8ab0390ed36367a1151b459bbe0a"
|
||||
ALGOIM depends on BLITZ and the library must be built prior to the MFEM build.
|
||||
ALGOIM depends on BLITZ and rhe library must be built prior to the MFEM build.
|
||||
Download v1.0.2, untar it at the same level as MFEM and create a symbolic link:
|
||||
"ln -s blitz-1.0.2 blitz".
|
||||
Build Blitz using CMake as:
|
||||
@@ -797,10 +794,10 @@ The specific libraries and their options are:
|
||||
Versions: libCEED >= 0.10.
|
||||
|
||||
- RAJA (optional), used when MFEM_USE_RAJA = YES.
|
||||
Beginning with MFEM v4.5.1, only RAJA v2022.10.3+ is supported.
|
||||
Beginning with MFEM v4.3, only RAJA v0.14.0+ is supported.
|
||||
URL: https://github.com/LLNL/RAJA
|
||||
Options: RAJA_DIR, RAJA_OPT, RAJA_LIB.
|
||||
Versions: RAJA >= 2022.10.3.
|
||||
Versions: RAJA >= 0.14.0.
|
||||
|
||||
- Moonolith (optional), use when MFEM_USE_MOONOLITH = YES.
|
||||
URL: https://bitbucket.org/zulianp/par_moonolith
|
||||
@@ -964,6 +961,7 @@ MFEM_USE_LEGACY_OPENMP
|
||||
MFEM_USE_OPENMP
|
||||
MFEM_USE_MEMALLOC
|
||||
MFEM_TIMER_TYPE - Set automatically, can be overwritten.
|
||||
MFEM_USE_MESQUITE
|
||||
MFEM_USE_SUITESPARSE
|
||||
MFEM_USE_SUPERLU
|
||||
MFEM_USE_MUMPS
|
||||
@@ -1028,6 +1026,7 @@ The CMake build system adds auto-detection for the following packages/libraries:
|
||||
- HYPRE
|
||||
- METIS - The option MFEM_USE_METIS_5 is auto-detected.
|
||||
- ParMETIS
|
||||
- MESQUITE
|
||||
- SuiteSparse
|
||||
- SuperLUDist, STRUMPACK
|
||||
- Ginkgo
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
BSD 3-Clause License
|
||||
|
||||
Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC
|
||||
Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC
|
||||
All rights reserved.
|
||||
|
||||
Redistribution and use in source and binary forms, with or without
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -212,6 +212,10 @@ IF (DEFINED TPL_ENABLE_SUNDIALS)
|
||||
SET(MFEM_USE_SUNDIALS ${TPL_ENABLE_SUNDIALS} CACHE BOOL "Enable SUNDIALS usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_MESQUITE)
|
||||
SET(MFEM_USE_MESQUITE ${TPL_ENABLE_MESQUITE} CACHE BOOL "Enable MESQUITE usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
IF (DEFINED TPL_ENABLE_SUITESPARSE)
|
||||
SET(MFEM_USE_SUITESPARSE ${TPL_ENABLE_SUITESPARSE} CACHE BOOL "Enable SuiteSparse usage" FORCE)
|
||||
ENDIF()
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -29,6 +29,7 @@ set(MFEM_USE_LEGACY_OPENMP @MFEM_USE_LEGACY_OPENMP@)
|
||||
set(MFEM_USE_MEMALLOC @MFEM_USE_MEMALLOC@)
|
||||
set(MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@)
|
||||
set(MFEM_USE_SUNDIALS @MFEM_USE_SUNDIALS@)
|
||||
set(MFEM_USE_MESQUITE @MFEM_USE_MESQUITE@)
|
||||
set(MFEM_USE_SUITESPARSE @MFEM_USE_SUITESPARSE@)
|
||||
set(MFEM_USE_SUPERLU @MFEM_USE_SUPERLU@)
|
||||
set(MFEM_USE_MUMPS @MFEM_USE_MUMPS@)
|
||||
@@ -55,8 +56,6 @@ set(MFEM_USE_SIMD @MFEM_USE_SIMD@)
|
||||
set(MFEM_USE_ADIOS2 @MFEM_USE_ADIOS2@)
|
||||
set(MFEM_USE_MOONOLITH @MFEM_USE_MOONOLITH@)
|
||||
set(MFEM_USE_CODIPACK @MFEM_USE_CODIPACK@)
|
||||
set(MFEM_USE_MKL_CPARDISO @MFEM_USE_MKL_CPARDISO@)
|
||||
set(MFEM_USE_MKL_PARDISO @MFEM_USE_MKL_PARDISO@)
|
||||
set(MFEM_USE_ADFORWARD @MFEM_USE_ADFORWARD@)
|
||||
set(MFEM_USE_CALIPER @MFEM_USE_CALIPER@)
|
||||
set(MFEM_USE_ALGOIM @MFEM_USE_ALGOIM@)
|
||||
|
||||
+61
-69
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
@@ -39,9 +39,6 @@
|
||||
// Description of the git commit used to build MFEM.
|
||||
#cmakedefine MFEM_GIT_STRING "@MFEM_GIT_STRING@"
|
||||
|
||||
// Enable shared library build of MFEM.
|
||||
#cmakedefine MFEM_SHARED_BUILD
|
||||
|
||||
// Build the parallel MFEM library.
|
||||
// Requires an MPI compiler, and the libraries HYPRE and METIS.
|
||||
#cmakedefine MFEM_USE_MPI
|
||||
@@ -80,102 +77,100 @@
|
||||
// Internal MFEM option: enable group/batch allocation for some small objects.
|
||||
#cmakedefine MFEM_USE_MEMALLOC
|
||||
|
||||
// Which library functions to use in class StopWatch for measuring time.
|
||||
// For a list of the available options, see INSTALL.
|
||||
// If not defined, an option is selected automatically.
|
||||
#cmakedefine MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
|
||||
|
||||
// Enable MFEM functionality based on the SUNDIALS libraries.
|
||||
#cmakedefine MFEM_USE_SUNDIALS
|
||||
// Enable MFEM functionality based on the Mesquite library.
|
||||
#cmakedefine MFEM_USE_MESQUITE
|
||||
|
||||
// Enable MFEM functionality based on the SuiteSparse library.
|
||||
#cmakedefine MFEM_USE_SUITESPARSE
|
||||
|
||||
// Enable MFEM functionality based on the SuperLU_DIST library.
|
||||
#cmakedefine MFEM_USE_SUPERLU
|
||||
#cmakedefine MFEM_USE_SUPERLU5
|
||||
|
||||
// Enable MFEM functionality based on the MUMPS library.
|
||||
#cmakedefine MFEM_USE_MUMPS
|
||||
#cmakedefine MFEM_MUMPS_VERSION @MFEM_MUMPS_VERSION@
|
||||
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
#cmakedefine MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable functionality based on the Ginkgo library.
|
||||
// Enable functionality based on the Ginkgo library
|
||||
#cmakedefine MFEM_USE_GINKGO
|
||||
|
||||
// Enable MFEM functionality based on the AmgX library.
|
||||
// Enable MFEM functionality based on the AmgX library
|
||||
#cmakedefine MFEM_USE_AMGX
|
||||
|
||||
// Enable secure socket streams based on the GNUTLS library.
|
||||
// Enable MFEM functionality based on the GnuTLS library
|
||||
#cmakedefine MFEM_USE_GNUTLS
|
||||
|
||||
// Enable Sidre support.
|
||||
#cmakedefine MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes.
|
||||
#cmakedefine MFEM_USE_SIMD
|
||||
|
||||
// Enable FMS support.
|
||||
#cmakedefine MFEM_USE_FMS
|
||||
|
||||
// Enable Conduit support.
|
||||
#cmakedefine MFEM_USE_CONDUIT
|
||||
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files).
|
||||
#cmakedefine MFEM_USE_NETCDF
|
||||
|
||||
// Enable functionality based on the PETSc library.
|
||||
#cmakedefine MFEM_USE_PETSC
|
||||
|
||||
// Enable functionality based on the SLEPc library.
|
||||
#cmakedefine MFEM_USE_SLEPC
|
||||
|
||||
// Enable functionality based on the MPFR library.
|
||||
#cmakedefine MFEM_USE_MPFR
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library.
|
||||
#cmakedefine MFEM_USE_PUMI
|
||||
|
||||
// Enable Moonolith-based general interpolation between finite element spaces.
|
||||
#cmakedefine MFEM_USE_MOONOLITH
|
||||
|
||||
// Enable MFEM functionality based on the HIOP library.
|
||||
#cmakedefine MFEM_USE_HIOP
|
||||
|
||||
// Enable MFEM functionality based on the GSLIB library.
|
||||
// Enable MFEM functionality based on the GSLIB library
|
||||
#cmakedefine MFEM_USE_GSLIB
|
||||
|
||||
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
|
||||
// Enable MFEM functionality based on the NetCDF library
|
||||
#cmakedefine MFEM_USE_NETCDF
|
||||
|
||||
// Enable MFEM functionality based on the PETSc library
|
||||
#cmakedefine MFEM_USE_PETSC
|
||||
|
||||
// Enable MFEM functionality based on the SLEPc library
|
||||
#cmakedefine MFEM_USE_SLEPC
|
||||
|
||||
// Enable MFEM functionality based on the Sidre library
|
||||
#cmakedefine MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes
|
||||
#cmakedefine MFEM_USE_SIMD
|
||||
|
||||
// Enable MFEM functionality based on the FMS library
|
||||
#cmakedefine MFEM_USE_FMS
|
||||
|
||||
// Enable MFEM functionality based on Conduit
|
||||
#cmakedefine MFEM_USE_CONDUIT
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
#cmakedefine MFEM_USE_PUMI
|
||||
|
||||
// Enable MFEM functionality based on the Moonolith library
|
||||
#cmakedefine MFEM_USE_MOONOLITH
|
||||
|
||||
// Enable MFEM functionality based on the HiOp library
|
||||
#cmakedefine MFEM_USE_HIOP
|
||||
|
||||
// Build the GPU/CUDA-enabled version of the MFEM library.
|
||||
// Requires a CUDA compiler (nvcc).
|
||||
#cmakedefine MFEM_USE_CUDA
|
||||
|
||||
// Build the AMD GPU/HIP-enabled version of the MFEM library.
|
||||
// Build the HIP-enabled version of the MFEM library.
|
||||
// Requires a HIP compiler (hipcc).
|
||||
#cmakedefine MFEM_USE_HIP
|
||||
|
||||
// Enable functionality based on the RAJA library.
|
||||
// Enable MFEM functionality based on the RAJA library
|
||||
#cmakedefine MFEM_USE_RAJA
|
||||
|
||||
// Enable functionality based on the OCCA library.
|
||||
// Enable MFEM functionality based on the OCCA library
|
||||
#cmakedefine MFEM_USE_OCCA
|
||||
|
||||
// Enable functionality based on the libCEED library.
|
||||
// Enable MFEM functionality based on the libCEED library
|
||||
#cmakedefine MFEM_USE_CEED
|
||||
|
||||
// Enable functionality based on the Caliper library.
|
||||
#cmakedefine MFEM_USE_CALIPER
|
||||
|
||||
// Enable functionality based on the Algoim library.
|
||||
#cmakedefine MFEM_USE_ALGOIM
|
||||
|
||||
// Enable functionality based on the Umpire library.
|
||||
// Enable MFEM functionality based on the Umpire library
|
||||
#cmakedefine MFEM_USE_UMPIRE
|
||||
|
||||
// Enable IO functionality based on the ADIOS2 library.
|
||||
// Enable MFEM functionality based on the ADIOS2 library
|
||||
#cmakedefine MFEM_USE_ADIOS2
|
||||
|
||||
// Enable MFEM functionality based on the Caliper library
|
||||
#cmakedefine MFEM_USE_CALIPER
|
||||
|
||||
// Enable MFEM functionality based on the Algoim library
|
||||
#cmakedefine MFEM_USE_ALGOIM
|
||||
|
||||
// Which library functions to use in class StopWatch for measuring time.
|
||||
// For a list of the available options, see INSTALL.
|
||||
// If not defined, an option is selected automatically.
|
||||
#define MFEM_TIMER_TYPE @MFEM_TIMER_TYPE@
|
||||
|
||||
// Enable MFEM functionality based on the SUNDIALS libraries.
|
||||
#cmakedefine MFEM_USE_SUNDIALS
|
||||
|
||||
// Version of HYPRE used for building MFEM.
|
||||
#cmakedefine MFEM_HYPRE_VERSION @MFEM_HYPRE_VERSION@
|
||||
|
||||
@@ -186,16 +181,13 @@
|
||||
// Enable interface to the MKL CPardiso library.
|
||||
#cmakedefine MFEM_USE_MKL_CPARDISO
|
||||
|
||||
// Enable interface to the MKL Pardiso library.
|
||||
#cmakedefine MFEM_USE_MKL_PARDISO
|
||||
|
||||
// Use forward mode for automatic differentiation.
|
||||
// Use forward mode for automatic differentiation
|
||||
#cmakedefine MFEM_USE_ADFORWARD
|
||||
|
||||
// Enable the use of the CoDiPack library for AD.
|
||||
// Enable the use of the CoDiPack library for AD
|
||||
#cmakedefine MFEM_USE_CODIPACK
|
||||
|
||||
// Enable functionality based on the Google Benchmark library.
|
||||
// Enable MFEM functionality based on the Google Benchmark library.
|
||||
#cmakedefine MFEM_USE_BENCHMARK
|
||||
|
||||
// Enable Enzyme for AD
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -16,7 +16,7 @@
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(Algoim ALGOIM ALGOIM_DIR
|
||||
"include;src" "algoim_quad.hpp"
|
||||
"include" "algoim_quad.hpp"
|
||||
"" ""
|
||||
"Paths to headers required by Algoim."
|
||||
"Libraries required by Algoim.")
|
||||
"Paths to headers required by Algoim."
|
||||
"Libraries required by Algoim.")
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -16,22 +16,7 @@
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(Caliper CALIPER CALIPER_DIR
|
||||
"include" "caliper/cali.h"
|
||||
"lib" "caliper"
|
||||
"Paths to headers required by Caliper."
|
||||
"Libraries required by Caliper.")
|
||||
|
||||
# Append adiak path/lib if the user provided ADIAK_DIR
|
||||
if(ADIAK_DIR AND EXISTS ${ADIAK_DIR})
|
||||
find_package(adiak NO_DEFAULT_PATH REQUIRED PATHS ${ADIAK_DIR}/lib/cmake/adiak ${ADIAK_DIR})
|
||||
list(APPEND CALIPER_INCLUDE_DIRS ${adiak_INCLUDE_DIRS})
|
||||
list(APPEND CALIPER_LIBRARIES ${adiak_LIBRARIES})
|
||||
endif()
|
||||
|
||||
# Append gotcha path/lib if the user provided GOTCHA_DIR
|
||||
if(GOTCHA_DIR AND EXISTS ${GOTCHA_DIR})
|
||||
find_package(gotcha NO_DEFAULT_PATH REQUIRED PATHS ${GOTCHA_DIR}/lib/cmake/gotcha ${GOTCHA_DIR})
|
||||
list(APPEND CALIPER_INCLUDE_DIRS ${gotcha_INCLUDE_DIRS})
|
||||
list(APPEND CALIPER_LIBRARIES ${gotcha_LIBRARIES})
|
||||
endif()
|
||||
|
||||
"include" "caliper/cali.h"
|
||||
"lib" "caliper"
|
||||
"Paths to headers required by Caliper."
|
||||
"Libraries required by Caliper.")
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -21,15 +21,8 @@ if(EXISTS ${CONDUIT_DIR}/include/conduit/conduit_relay_hdf5.hpp)
|
||||
# we only need HDF5 if Conduit was built with HDF5 support
|
||||
set(Conduit_REQUIRED_PACKAGES "HDF5" CACHE STRING
|
||||
"Additional packages required by Conduit.")
|
||||
# Suppress warning about HDF5_ROOT being set
|
||||
if (POLICY CMP0074)
|
||||
cmake_policy(SET CMP0074 NEW)
|
||||
endif()
|
||||
# HDF5_ROOT is needed in some cases, e.g. when HDF5_TARGET_NAMES is set and
|
||||
# MFEM's FindHDF5.cmake is not used.
|
||||
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
|
||||
else()
|
||||
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
|
||||
else()
|
||||
message(STATUS "Conduit Relay HDF5 Support is DISABLED")
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
@@ -39,4 +32,4 @@ mfem_find_package(Conduit CONDUIT CONDUIT_DIR
|
||||
ADD_COMPONENT relay
|
||||
"include;include/conduit" conduit_relay.hpp "lib" conduit_relay
|
||||
ADD_COMPONENT blueprint
|
||||
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
|
||||
"include;include/conduit" conduit_blueprint.hpp "lib" conduit_blueprint)
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -19,7 +19,7 @@ if(EXISTS "${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so")
|
||||
# Set ENZYME_FOUND
|
||||
set(ENZYME_FOUND TRUE CACHE BOOL "ENZYME was found." FORCE)
|
||||
|
||||
# Set CXX flags to accommodate the Enzyme Clang plugin
|
||||
# Set CXX flags to accomodate the Enzyme Clang plugin
|
||||
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Xclang -load -Xclang ${ENZYME_DIR}/ClangEnzyme-${ENZYME_VERSION}.so -mllvm -enzyme-loose-types=1")
|
||||
set(MFEM_USE_ENZYME YES)
|
||||
else()
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,70 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - HDF5_FOUND - If HDF5 was found
|
||||
# - HDF5_LIBRARIES - The HDF5 libraries
|
||||
# - HDF5_INCLUDE_DIRS - The HDF5 include directories
|
||||
|
||||
# NOTE: Using this FindHDF5.cmake instead of the CMake provided version may lead
|
||||
# to issues with some TPL libraries that depend (or may depend) on HDF5.
|
||||
# For this reason, we should consider removing this file, or at least
|
||||
# making it use the CMake provided version by default and apply the logic
|
||||
# below only when specifically requested by a user. -V. Dobrev
|
||||
|
||||
# First Check for HDF5_DIR
|
||||
if(NOT HDF5_DIR)
|
||||
message(FATAL_ERROR
|
||||
"Could not find HDF5. HDF5 support needs explicit HDF5_DIR")
|
||||
endif()
|
||||
|
||||
if (NOT HDF5_FIND_QUIETLY)
|
||||
message(STATUS "Looking for HDF5 ...")
|
||||
message(STATUS " in HDF5_DIR = ${HDF5_DIR}")
|
||||
endif()
|
||||
|
||||
# Find includes
|
||||
find_path( HDF5_INCLUDE_DIRS hdf5.h
|
||||
PATHS ${HDF5_DIR}/include/
|
||||
NO_DEFAULT_PATH
|
||||
NO_CMAKE_ENVIRONMENT_PATH
|
||||
NO_CMAKE_PATH
|
||||
NO_SYSTEM_ENVIRONMENT_PATH
|
||||
NO_CMAKE_SYSTEM_PATH)
|
||||
|
||||
find_library( __HDF5_LIBRARY NAMES hdf5 libhdf5 libhdf5_D libhdf5_debug
|
||||
PATHS ${HDF5_DIR}/lib
|
||||
NO_DEFAULT_PATH
|
||||
NO_CMAKE_ENVIRONMENT_PATH
|
||||
NO_CMAKE_PATH
|
||||
NO_SYSTEM_ENVIRONMENT_PATH
|
||||
NO_CMAKE_SYSTEM_PATH)
|
||||
|
||||
find_library( __HDF5_HL_LIBRARY NAMES hdf5_hl libhdf5_hl libhdf5_hl_D libhdf5_hl_debug
|
||||
PATHS ${HDF5_DIR}/lib
|
||||
NO_DEFAULT_PATH
|
||||
NO_CMAKE_ENVIRONMENT_PATH
|
||||
NO_CMAKE_PATH
|
||||
NO_SYSTEM_ENVIRONMENT_PATH
|
||||
NO_CMAKE_SYSTEM_PATH)
|
||||
|
||||
set(HDF5_LIBRARIES ${__HDF5_HL_LIBRARY} ${__HDF5_LIBRARY})
|
||||
|
||||
include(FindPackageHandleStandardArgs)
|
||||
|
||||
# Handle the QUIETLY and REQUIRED arguments and set HDF5_FOUND to TRUE if all
|
||||
# listed variables are TRUE
|
||||
find_package_handle_standard_args(HDF5
|
||||
" *** HDF5 not found. Please set HDF5_DIR."
|
||||
HDF5_LIBRARIES
|
||||
HDF5_INCLUDE_DIRS
|
||||
__HDF5_LIBRARY
|
||||
__HDF5_HL_LIBRARY)
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,27 +0,0 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - MKL_PARDISO_FOUND
|
||||
# - MKL_PARDISO_LIBRARIES
|
||||
# - MKL_PARDISO_INCLUDE_DIRS
|
||||
|
||||
if(NOT MKL_LIBRARY_DIR)
|
||||
message(WARNING "Using default MKL library path. Double check the variable MKL_LIBRARY_DIR")
|
||||
set(MKL_LIBRARY_DIR "lib/intel64")
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(MKL_PARDISO MKL_PARDISO
|
||||
MKL_PARDISO_DIR "include" mkl_pardiso.h ${MKL_LIBRARY_DIR} mkl_core
|
||||
"Paths to headers required by MKL Pardiso." "Libraries required by MKL PARDISO."
|
||||
ADD_COMPONENT MKL_LP64 "include" "" ${MKL_LIBRARY_DIR} mkl_intel_lp64
|
||||
ADD_COMPONENT MKL_SEQUENTIAL "include" "" ${MKL_LIBRARY_DIR} mkl_sequential)
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -11,9 +11,8 @@
|
||||
|
||||
# Sets the following variables:
|
||||
# - MUMPS_FOUND
|
||||
# - MUMPS_LIBRARIES
|
||||
# - MUMPS_INCLUDE_DIRS
|
||||
# - MUMPS_VERSION
|
||||
# - MUMPS_LIBRARIES
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(MUMPS MUMPS MUMPS_DIR
|
||||
@@ -22,18 +21,3 @@ mfem_find_package(MUMPS MUMPS MUMPS_DIR
|
||||
"Libraries required by MUMPS."
|
||||
ADD_COMPONENT mumps_common "include" dmumps_c.h "lib" mumps_common
|
||||
ADD_COMPONENT pord "include" dmumps_c.h "lib" pord)
|
||||
|
||||
if (MUMPS_FOUND AND (NOT MUMPS_VERSION))
|
||||
try_run(MUMPS_VERSION_RUN_RESULT MUMPS_VERSION_COMPILE_RESULT
|
||||
${CMAKE_CURRENT_BINARY_DIR}/config
|
||||
${CMAKE_CURRENT_SOURCE_DIR}/config/get_mumps_version.cpp
|
||||
CMAKE_FLAGS -DINCLUDE_DIRECTORIES:STRING=${MUMPS_INCLUDE_DIRS}
|
||||
RUN_OUTPUT_VARIABLE MUMPS_VERSION_OUTPUT)
|
||||
if ((MUMPS_VERSION_RUN_RESULT EQUAL 0) AND MUMPS_VERSION_OUTPUT)
|
||||
string(STRIP "${MUMPS_VERSION_OUTPUT}" MUMPS_VERSION)
|
||||
set(MUMPS_VERSION ${MUMPS_VERSION} CACHE STRING "MUMPS version." FORCE)
|
||||
message(STATUS "Found MUMPS version ${MUMPS_VERSION}")
|
||||
else()
|
||||
message(FATAL_ERROR "Unable to determine MUMPS version.")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
@@ -0,0 +1,20 @@
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Defines the following variables:
|
||||
# - MESQUITE_FOUND
|
||||
# - MESQUITE_LIBRARIES
|
||||
# - MESQUITE_INCLUDE_DIRS
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(Mesquite MESQUITE MESQUITE_DIR
|
||||
"include" "Mesquite_all_headers.hpp" "lib" "mesquite"
|
||||
"Paths to headers required by Mesquite." "Libraries required by Mesquite.")
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,38 +14,21 @@
|
||||
# - NETCDF_LIBRARIES
|
||||
# - NETCDF_INCLUDE_DIRS
|
||||
|
||||
# Suppress warning about HDF5_ROOT being set
|
||||
if (POLICY CMP0074)
|
||||
cmake_policy(SET CMP0074 NEW)
|
||||
endif()
|
||||
|
||||
include(MfemCmakeUtilities)
|
||||
|
||||
# FindHDF5.cmake uses HDF5_ROOT, so we "translate" from the MFEM convention
|
||||
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
|
||||
# FindHDF5.cmake is not used.)
|
||||
set(HDF5_ROOT ${HDF5_DIR} CACHE PATH "")
|
||||
|
||||
# We need to guard against the case where HDF5 was already found but without
|
||||
# the HL extensions (in which case mfem_find_package will treat the package
|
||||
# as already having been found), so we reset the variable to force FindHDF5.cmake
|
||||
# to be called for a second time
|
||||
set(HDF5_FOUND OFF)
|
||||
enable_language(C) # FindHDF5.cmake uses the C compiler
|
||||
|
||||
mfem_find_package(NetCDF NETCDF NETCDF_DIR "include" netcdf.h "lib" netcdf
|
||||
"Paths to headers required by NetCDF." "Libraries required by NetCDF.")
|
||||
|
||||
# The HL extension libraries are in a separate variable and must precede
|
||||
# the "regular" hdf5 library, as hdf5_hl depends on hdf5
|
||||
# The netcdf library will always be the first element of NETCDF_LIBRARIES
|
||||
# and we need to insert after that library but before the hdf5 library, so
|
||||
# position 1 is used
|
||||
# (Needed in some cases, e.g. when HDF5_TARGET_NAMES is set and MFEM's
|
||||
# FindHDF5.cmake is not used.)
|
||||
if (HDF5_C_LIBRARY_hdf5_hl)
|
||||
list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
|
||||
if (NOT NetCDF_FIND_QUIETLY)
|
||||
message(STATUS "Updated NetCDF libraries: ${NETCDF_LIBRARIES}")
|
||||
endif()
|
||||
endif()
|
||||
list(INSERT NETCDF_LIBRARIES 1 ${HDF5_C_LIBRARY_hdf5_hl})
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,27 +14,17 @@
|
||||
# - RAJA_LIBRARIES
|
||||
# - RAJA_INCLUDE_DIRS
|
||||
|
||||
if (RAJA_FOUND)
|
||||
return()
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(RAJA RAJA RAJA_DIR "include" "RAJA/RAJA.hpp" "lib" "RAJA"
|
||||
"Paths to headers required by RAJA." "Libraries required by RAJA.")
|
||||
|
||||
if (NOT RAJA_CONFIG_CMAKE)
|
||||
set(RAJA_CONFIG_CMAKE "${RAJA_DIR}/share/raja/cmake/raja-config.cmake")
|
||||
endif()
|
||||
message(STATUS "Looking for RAJA ...")
|
||||
if (RAJA_DIR)
|
||||
message(STATUS " in RAJA_DIR = ${RAJA_DIR}")
|
||||
find_package(RAJA CONFIG NO_DEFAULT_PATH PATHS "${RAJA_DIR}")
|
||||
endif()
|
||||
if (NOT RAJA_FOUND)
|
||||
message(STATUS " in standard CMake locations")
|
||||
find_package(RAJA CONFIG)
|
||||
endif()
|
||||
if (RAJA_FOUND)
|
||||
set(RAJA_LIBRARIES "RAJA" CACHE STRING "RAJA imported target." FORCE)
|
||||
set(RAJA_INCLUDE_DIRS "" CACHE STRING "RAJA include dirs (not used)" FORCE)
|
||||
message(STATUS
|
||||
"Found RAJA target: ${RAJA_LIBRARIES} (version: ${RAJA_VERSION})")
|
||||
else()
|
||||
set(msg STATUS)
|
||||
if (RAJA_FIND_REQUIRED)
|
||||
set(msg FATAL_ERROR)
|
||||
if (EXISTS "${RAJA_CONFIG_CMAKE}")
|
||||
include("${RAJA_CONFIG_CMAKE}")
|
||||
if (ENABLE_CUDA AND NOT MFEM_USE_CUDA)
|
||||
message(FATAL_ERROR
|
||||
"RAJA is built with CUDA: MFEM_USE_CUDA=YES is required")
|
||||
endif()
|
||||
message(${msg} "RAJA not found. Please set RAJA_DIR to the RAJA prefix.")
|
||||
endif()
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -22,8 +22,8 @@ mfem_find_package(SUNDIALS SUNDIALS SUNDIALS_DIR
|
||||
"include" nvector/nvector_serial.h "lib" sundials_nvecserial
|
||||
ADD_COMPONENT NVector_Cuda
|
||||
"include" nvector/nvector_cuda.h "lib" sundials_nveccuda
|
||||
ADD_COMPONENT NVector_Hip
|
||||
"include" nvector/nvector_hip.h "lib" sundials_nvechip
|
||||
ADD_COMPONENT NVector_ParHyp
|
||||
"include" nvector/nvector_parhyp.h "lib" sundials_nvecparhyp
|
||||
ADD_COMPONENT NVector_Parallel
|
||||
"include" nvector/nvector_parallel.h "lib" sundials_nvecparallel
|
||||
ADD_COMPONENT NVector_MPIPlusX
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -14,23 +14,6 @@
|
||||
# - UMPIRE_LIBRARIES
|
||||
# - UMPIRE_INCLUDE_DIRS
|
||||
|
||||
if (NOT umpire_DIR AND UMPIRE_DIR)
|
||||
set(umpire_DIR ${UMPIRE_DIR}/lib/cmake/umpire)
|
||||
endif()
|
||||
message(STATUS "Looking for UMPIRE ...")
|
||||
message(STATUS " in UMPIRE_DIR = ${UMPIRE_DIR}")
|
||||
message(STATUS " umpire_DIR = ${umpire_DIR}")
|
||||
find_package(umpire CONFIG)
|
||||
set(UMPIRE_FOUND ${umpire_FOUND})
|
||||
set(UMPIRE_LIBRARIES "umpire")
|
||||
if (UMPIRE_FOUND)
|
||||
message(STATUS
|
||||
"Found UMPIRE target: ${UMPIRE_LIBRARIES} (version: ${umpire_VERSION})")
|
||||
else()
|
||||
set(msg STATUS)
|
||||
if (UMPIRE_FIND_REQUIRED)
|
||||
set(msg FATAL_ERROR)
|
||||
endif()
|
||||
message(${msg}
|
||||
"UMPIRE not found. Please set UMPIRE_DIR to the install prefix.")
|
||||
endif()
|
||||
include(MfemCmakeUtilities)
|
||||
mfem_find_package(UMPIRE UMPIRE UMPIRE_DIR "include" "umpire/Umpire.hpp" "lib" "umpire"
|
||||
"Paths to headers required by UMPIRE." "Libraries required by UMPIRE.")
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -43,18 +43,22 @@ function(convert_filenames_to_full_paths NAMES)
|
||||
set(${NAMES} ${tmp_names} PARENT_SCOPE)
|
||||
endfunction()
|
||||
|
||||
# Wrapper for add_executable
|
||||
# Wrapper for add_executable that calls the HIP wrapper if applicable
|
||||
macro(mfem_add_executable NAME)
|
||||
add_executable(${NAME} ${ARGN})
|
||||
if (MFEM_USE_CUDA)
|
||||
set_target_properties(${NAME} PROPERTIES
|
||||
CUDA_RESOLVE_DEVICE_SYMBOLS ON)
|
||||
if (MFEM_USE_HIP)
|
||||
add_executable(${NAME} ${ARGN})
|
||||
else()
|
||||
add_executable(${NAME} ${ARGN})
|
||||
endif()
|
||||
endmacro()
|
||||
|
||||
# Wrapper for add_library
|
||||
# Wrapper for add_library that calls the HIP wrapper if applicable
|
||||
macro(mfem_add_library NAME)
|
||||
add_library(${NAME} ${ARGN})
|
||||
if (MFEM_USE_HIP)
|
||||
add_library(${NAME} ${ARGN})
|
||||
else()
|
||||
add_library(${NAME} ${ARGN})
|
||||
endif()
|
||||
endmacro()
|
||||
|
||||
# Simple shortcut to add_custom_target() with option to add the target to the
|
||||
@@ -103,6 +107,25 @@ macro(add_mfem_examples EXE_SRCS)
|
||||
${MFEM_EXEC_PREREQUISITES_TARGET_NAME} ${EXE_PREREQUISITE})
|
||||
|
||||
target_link_libraries(${EXE_NAME} mfem)
|
||||
if (MFEM_USE_MPI)
|
||||
# Not needed: (mfem already links with MPI_CXX_LIBRARIES)
|
||||
# target_link_libraries(${EXE_NAME} ${MPI_CXX_LIBRARIES})
|
||||
|
||||
# Language-specific include directories:
|
||||
if (MPI_CXX_INCLUDE_PATH)
|
||||
target_include_directories(${EXE_NAME} PRIVATE "${MPI_CXX_INCLUDE_PATH}")
|
||||
endif()
|
||||
if (MPI_CXX_COMPILE_FLAGS)
|
||||
separate_arguments(MPI_CXX_COMPILE_ARGS UNIX_COMMAND
|
||||
"${MPI_CXX_COMPILE_FLAGS}")
|
||||
target_compile_options(${EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_ARGS})
|
||||
endif()
|
||||
|
||||
if (MPI_CXX_LINK_FLAGS)
|
||||
set_target_properties(${EXE_NAME} PROPERTIES
|
||||
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
endforeach(SRC_FILE)
|
||||
endmacro()
|
||||
|
||||
@@ -143,16 +166,53 @@ macro(add_mfem_miniapp MFEM_EXE_NAME)
|
||||
|
||||
# Append the additional libraries and options
|
||||
if (LIBRARIES_LIST)
|
||||
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${LIBRARIES_LIST})
|
||||
if(CMAKE_VERSION VERSION_GREATER 2.8.11)
|
||||
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${LIBRARIES_LIST})
|
||||
else()
|
||||
target_link_libraries(${MFEM_EXE_NAME} ${LIBRARIES_LIST})
|
||||
endif()
|
||||
endif()
|
||||
if (EXTRA_OPTIONS_LIST)
|
||||
string(REPLACE ";" " " EXTRA_OPTIONS_STRING "${EXTRA_OPTIONS_LIST}")
|
||||
message(STATUS "${MFEM_EXE_NAME}: add flags \"${EXTRA_OPTIONS_STRING}\"")
|
||||
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${EXTRA_OPTIONS_LIST})
|
||||
if(CMAKE_VERSION VERSION_GREATER 2.8.11)
|
||||
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${EXTRA_OPTIONS_LIST})
|
||||
else()
|
||||
get_target_property(THIS_COMPILE_FLAGS ${MFEM_EXE_NAME} COMPILE_FLAGS)
|
||||
if (THIS_COMPILE_FLAGS)
|
||||
set(THIS_COMPILE_FLAGS "${THIS_COMPILE_FLAGS} ${EXTRA_OPTIONS_STRING}")
|
||||
else()
|
||||
set(THIS_COMPILE_FLAGS "${EXTRA_OPTIONS_STRING}")
|
||||
endif()
|
||||
set_target_properties(${MFEM_EXE_NAME}
|
||||
PROPERTIES COMPILE_FLAGS ${THIS_COMPILE_FLAGS})
|
||||
endif()
|
||||
endif()
|
||||
if (EXTRA_DEFINES_LIST)
|
||||
target_compile_definitions(${MFEM_EXE_NAME} PRIVATE ${EXTRA_DEFINES_LIST})
|
||||
endif()
|
||||
|
||||
# Handle the MPI separately
|
||||
if (MFEM_USE_MPI)
|
||||
# Add MPI_CXX_LIBRARIES, in case this target does not link with mfem.
|
||||
if(CMAKE_VERSION VERSION_GREATER 2.8.11)
|
||||
target_link_libraries(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_LIBRARIES})
|
||||
else()
|
||||
target_link_libraries(${MFEM_EXE_NAME} ${MPI_CXX_LIBRARIES})
|
||||
endif()
|
||||
|
||||
if (MPI_CXX_INCLUDE_PATH)
|
||||
target_include_directories(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_INCLUDE_PATH})
|
||||
endif()
|
||||
if (MPI_CXX_COMPILE_FLAGS)
|
||||
target_compile_options(${MFEM_EXE_NAME} PRIVATE ${MPI_CXX_COMPILE_FLAGS})
|
||||
endif()
|
||||
|
||||
if (MPI_CXX_LINK_FLAGS)
|
||||
set_target_properties(${MFEM_EXE_NAME} PROPERTIES
|
||||
LINK_FLAGS "${MPI_CXX_LINK_FLAGS}")
|
||||
endif()
|
||||
endif()
|
||||
endmacro()
|
||||
|
||||
|
||||
@@ -397,9 +457,9 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
break()
|
||||
endif()
|
||||
endforeach()
|
||||
if (Required AND NOT ${ReqPack}_FOUND)
|
||||
if (${Required} AND NOT ${ReqPack}_FOUND)
|
||||
message(FATAL_ERROR " *** Required package ${ReqPack} not found."
|
||||
" Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
|
||||
"Checked target names: ${ReqPack} ${${ReqPack}_TARGET_NAMES}")
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
@@ -465,18 +525,14 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
endif()
|
||||
get_target_property(IsImported ${TargetName} IMPORTED)
|
||||
if (IsImported)
|
||||
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
|
||||
# message(STATUS "${ReqPack} imported configs: ${ImpConfigs}")
|
||||
set(ImportConfig ${${ReqPack}_IMPORT_CONFIG})
|
||||
if (NOT ImportConfig)
|
||||
set(ImportConfig RELEASE)
|
||||
list(FIND ImpConfigs ${ImportConfig} _Index)
|
||||
if (_Index EQUAL -1)
|
||||
list(GET ImpConfigs 0 ImportConfig)
|
||||
endif()
|
||||
endif()
|
||||
set(ImportConfigSuffix "_${ImportConfig}")
|
||||
if ((NOT ImportConfig) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
|
||||
get_target_property(ImpConfigs ${TargetName} IMPORTED_CONFIGURATIONS)
|
||||
list(FIND ImpConfigs ${ImportConfig} _Index)
|
||||
if ((_Index EQUAL -1) OR ("${ImportConfig}" STREQUAL "NO_CONFIG"))
|
||||
set(ImportConfig "NO_CONFIG")
|
||||
set(ImportConfigSuffix "")
|
||||
# message(FATAL_ERROR " *** ${ReqPack}: configuration "
|
||||
@@ -494,8 +550,7 @@ function(mfem_find_package Name Prefix DirVar IncSuffixes Header LibSuffixes
|
||||
else()
|
||||
# Set _Pack_LIBS from the target properties for ImportConfig
|
||||
foreach (_prop IMPORTED_LOCATION${ImportConfigSuffix}
|
||||
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix}
|
||||
INTERFACE_LINK_LIBRARIES)
|
||||
IMPORTED_LINK_INTERFACE_LIBRARIES${ImportConfigSuffix})
|
||||
get_target_property(_value ${TargetName} ${_prop})
|
||||
if (_value)
|
||||
list(APPEND _Pack_LIBS ${_value})
|
||||
@@ -746,7 +801,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
list(APPEND CompileOpts "-isystem \"${SysDir}\"")
|
||||
endforeach()
|
||||
endif()
|
||||
set(AddInterfaceLinkLibs TRUE)
|
||||
if ("${type}" STREQUAL "STATIC_LIBRARY")
|
||||
get_target_property(Location ${tgt} LOCATION)
|
||||
if (Location)
|
||||
@@ -768,27 +822,11 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
message(STATUS " *** Warning: [${tgt}] LOCATION not defined!")
|
||||
endif()
|
||||
elseif ("${type}" STREQUAL "INTERFACE_LIBRARY")
|
||||
# The INTERFACE_LINK_LIBRARIES property is handled below.
|
||||
# Other properties we may need to handle:
|
||||
# INTERFACE_LINK_DEPENDS
|
||||
# INTERFACE_LINK_DIRECTORIES
|
||||
# INTERFACE_LINK_OPTIONS
|
||||
else()
|
||||
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
|
||||
" which is not supported!")
|
||||
set(AddInterfaceLinkLibs FALSE)
|
||||
endif()
|
||||
if (AddInterfaceLinkLibs)
|
||||
get_target_property(Libs ${tgt} INTERFACE_LINK_LIBRARIES)
|
||||
# message(STATUS "${tgt}[INTERFACE_LINK_LIBRARIES]: ${Libs}")
|
||||
if (Libs)
|
||||
foreach(Lib ${Libs})
|
||||
if (NOT (TARGET ${Lib}))
|
||||
# message(STATUS "Lib = ${Lib}")
|
||||
# Filter-out generator expressions
|
||||
if (NOT ("${Lib}" MATCHES "^\\$"))
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
endif()
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
else()
|
||||
mfem_get_target_options(${Lib} COpts LOpts)
|
||||
list(APPEND CompileOpts ${COpts})
|
||||
@@ -796,6 +834,13 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
endif()
|
||||
endforeach()
|
||||
endif()
|
||||
# Other properties we may need to handle:
|
||||
# INTERFACE_LINK_DEPENDS
|
||||
# INTERFACE_LINK_DIRECTORIES
|
||||
# INTERFACE_LINK_OPTIONS
|
||||
else()
|
||||
message(STATUS " *** Warning: [${tgt}] uses target type '${type}'"
|
||||
" which is not supported!")
|
||||
endif()
|
||||
|
||||
# Other potentially relevant properties:
|
||||
@@ -819,9 +864,6 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
set(${CompileOptsVar} "${CompileOpts}" PARENT_SCOPE)
|
||||
set(${LinkOptsVar} "${LinkOpts}" PARENT_SCOPE)
|
||||
|
||||
# message(STATUS "${tgt}[CompileOpts]: ${CompileOpts}")
|
||||
# message(STATUS "${tgt}[LinkOpts]: ${LinkOpts}")
|
||||
|
||||
endfunction(mfem_get_target_options)
|
||||
|
||||
|
||||
@@ -844,7 +886,7 @@ function(mfem_export_mk_files)
|
||||
set(CONFIG_MK_BOOL_VARS MFEM_USE_MPI MFEM_USE_METIS MFEM_USE_METIS_5
|
||||
MFEM_DEBUG MFEM_USE_EXCEPTIONS MFEM_USE_ZLIB MFEM_USE_LIBUNWIND
|
||||
MFEM_USE_LAPACK MFEM_THREAD_SAFE MFEM_USE_LEGACY_OPENMP MFEM_USE_OPENMP
|
||||
MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_SUITESPARSE
|
||||
MFEM_USE_MEMALLOC MFEM_USE_SUNDIALS MFEM_USE_MESQUITE MFEM_USE_SUITESPARSE
|
||||
MFEM_USE_SUPERLU MFEM_USE_SUPERLU5 MFEM_USE_MUMPS MFEM_USE_STRUMPACK
|
||||
MFEM_USE_GINKGO MFEM_USE_AMGX MFEM_USE_GNUTLS MFEM_USE_NETCDF
|
||||
MFEM_USE_PETSC MFEM_USE_SLEPC MFEM_USE_MPFR MFEM_USE_SIDRE MFEM_USE_FMS
|
||||
@@ -873,7 +915,7 @@ function(mfem_export_mk_files)
|
||||
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
|
||||
MFEM_CXXFLAGS)
|
||||
set(MFEM_TPLFLAGS "")
|
||||
foreach(dir ${TPL_INCLUDE_DIRS})
|
||||
foreach(dir ${MFEM_TPL_INCLUDE_DIRS})
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
|
||||
endforeach()
|
||||
# TODO: MFEM_TPLFLAGS: add other TPL flags, in addition to the -I flags.
|
||||
|
||||
+2
-23
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
@@ -30,31 +30,10 @@
|
||||
#endif
|
||||
|
||||
// Windows specific options
|
||||
#if defined(_WIN32) && !defined(_USE_MATH_DEFINES)
|
||||
#ifdef _WIN32
|
||||
// Macro needed to get defines like M_PI from <cmath>. (Visual Studio C++ only?)
|
||||
#define _USE_MATH_DEFINES
|
||||
#endif
|
||||
// Macro MFEM_EXPORT: this macro is used when declaring exported global
|
||||
// variables and static class variables in public header files, e.g.:
|
||||
// extern MFEM_EXPORT Geometry Geometries;
|
||||
// static MFEM_EXPORT Device device_singleton;
|
||||
// In cases where a class contains multiple static variables, instead of marking
|
||||
// all such variables with MFEM_EXPORT, one can mark the class with MFEM_EXPORT,
|
||||
// e.g.:
|
||||
// class MFEM_EXPORT MemoryManager ...
|
||||
// Note: MFEM's GitHub CI includes a shared MSVC build that will fail if a
|
||||
// variable that needs MFEM_EXPORT does not have it. However, builds with
|
||||
// optional external libraries are not tested and may require separate checks to
|
||||
// determine the necessity of MFEM_EXPORT.
|
||||
#if defined(_MSC_VER) && defined(MFEM_SHARED_BUILD)
|
||||
#ifdef mfem_EXPORTS
|
||||
#define MFEM_EXPORT __declspec(dllexport)
|
||||
#else
|
||||
#define MFEM_EXPORT __declspec(dllimport)
|
||||
#endif
|
||||
#else
|
||||
#define MFEM_EXPORT
|
||||
#endif
|
||||
// On Cygwin the option -std=c++11 prevents the definition of M_PI. Defining
|
||||
// the following macro allows us to get M_PI and some needed functions, e.g.
|
||||
// posix_memalign(), strdup(), strerror_r().
|
||||
|
||||
+20
-23
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
@@ -30,18 +30,15 @@
|
||||
#define MFEM_VERSION_MINOR (((MFEM_VERSION)/100)%100)
|
||||
#define MFEM_VERSION_PATCH ((MFEM_VERSION)%100)
|
||||
|
||||
// The absolute path of the MFEM source prefix.
|
||||
// The absolute path of the MFEM source prefix
|
||||
// #define MFEM_SOURCE_DIR "@MFEM_SOURCE_DIR@"
|
||||
|
||||
// The absolute path of the MFEM installation prefix.
|
||||
// The absolute path of the MFEM installation prefix
|
||||
// #define MFEM_INSTALL_DIR "@MFEM_INSTALL_DIR@"
|
||||
|
||||
// Description of the git commit used to build MFEM.
|
||||
// #define MFEM_GIT_STRING "@MFEM_GIT_STRING@"
|
||||
|
||||
// Enable shared library build of MFEM.
|
||||
// #define MFEM_SHARED_BUILD
|
||||
|
||||
// Build the parallel MFEM library.
|
||||
// Requires an MPI compiler, and the libraries HYPRE and METIS.
|
||||
// #define MFEM_USE_MPI
|
||||
@@ -88,10 +85,13 @@
|
||||
// Enable MFEM functionality based on the SUNDIALS libraries.
|
||||
// #define MFEM_USE_SUNDIALS
|
||||
|
||||
// Enable MFEM functionality based on the Mesquite library.
|
||||
// #define MFEM_USE_MESQUITE
|
||||
|
||||
// Enable MFEM functionality based on the SuiteSparse library.
|
||||
// #define MFEM_USE_SUITESPARSE
|
||||
|
||||
// Enable MFEM functionality based on the SuperLU_DIST library.
|
||||
// Enable MFEM functionality based on the SuperLU library.
|
||||
// #define MFEM_USE_SUPERLU
|
||||
// #define MFEM_USE_SUPERLU5
|
||||
|
||||
@@ -102,40 +102,40 @@
|
||||
// Enable MFEM functionality based on the STRUMPACK library.
|
||||
// #define MFEM_USE_STRUMPACK
|
||||
|
||||
// Enable MFEM features based on the Ginkgo library.
|
||||
// Enable MFEM features based on the Ginkgo library
|
||||
// #define MFEM_USE_GINKGO
|
||||
|
||||
// Enable MFEM functionality based on the AmgX library.
|
||||
// #define MFEM_USE_AMGX
|
||||
|
||||
// Enable secure socket streams based on the GNUTLS library.
|
||||
// Enable secure socket streams based on the GNUTLS library
|
||||
// #define MFEM_USE_GNUTLS
|
||||
|
||||
// Enable Sidre support.
|
||||
// Enable Sidre support
|
||||
// #define MFEM_USE_SIDRE
|
||||
|
||||
// Enable the use of SIMD in the high performance templated classes.
|
||||
// Enable the use of SIMD in the high performance templated classes
|
||||
// #define MFEM_USE_SIMD
|
||||
|
||||
// Enable FMS support.
|
||||
// Enable FMS support
|
||||
// #define MFEM_USE_FMS
|
||||
|
||||
// Enable Conduit support.
|
||||
// Enable Conduit support
|
||||
// #define MFEM_USE_CONDUIT
|
||||
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files).
|
||||
// Enable functionality based on the NetCDF library (reading CUBIT files)
|
||||
// #define MFEM_USE_NETCDF
|
||||
|
||||
// Enable functionality based on the PETSc library.
|
||||
// Enable functionality based on the PETSc library
|
||||
// #define MFEM_USE_PETSC
|
||||
|
||||
// Enable functionality based on the SLEPc library.
|
||||
// Enable functionality based on the SLEPc library
|
||||
// #define MFEM_USE_SLEPC
|
||||
|
||||
// Enable functionality based on the MPFR library.
|
||||
// #define MFEM_USE_MPFR
|
||||
|
||||
// Enable MFEM functionality based on the PUMI library.
|
||||
// Enable MFEM functionality based on the PUMI library
|
||||
// #define MFEM_USE_PUMI
|
||||
|
||||
// Enable Moonolith-based general interpolation between finite element spaces.
|
||||
@@ -144,7 +144,7 @@
|
||||
// Enable MFEM functionality based on the HIOP library.
|
||||
// #define MFEM_USE_HIOP
|
||||
|
||||
// Enable MFEM functionality based on the GSLIB library.
|
||||
// Enable MFEM functionality based on the GSLIB library
|
||||
// #define MFEM_USE_GSLIB
|
||||
|
||||
// Build the NVIDIA GPU/CUDA-enabled version of the MFEM library.
|
||||
@@ -186,13 +186,10 @@
|
||||
// Enable interface to the MKL CPardiso library.
|
||||
// #define MFEM_USE_MKL_CPARDISO
|
||||
|
||||
// Enable interface to the MKL Pardiso library.
|
||||
// #define MFEM_USE_MKL_PARDISO
|
||||
|
||||
// Use forward mode for automatic differentiation.
|
||||
// Use forward mode for automatic differentiation
|
||||
// #define MFEM_USE_ADFORWARD
|
||||
|
||||
// Enable the use of the CoDiPack library for AD.
|
||||
// Enable the use of the CoDiPack library for AD
|
||||
// #define MFEM_USE_CODIPACK
|
||||
|
||||
// Enable functionality based on the Google Benchmark library.
|
||||
|
||||
+2
-2
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -29,6 +29,7 @@ MFEM_USE_OPENMP = @MFEM_USE_OPENMP@
|
||||
MFEM_USE_MEMALLOC = @MFEM_USE_MEMALLOC@
|
||||
MFEM_TIMER_TYPE = @MFEM_TIMER_TYPE@
|
||||
MFEM_USE_SUNDIALS = @MFEM_USE_SUNDIALS@
|
||||
MFEM_USE_MESQUITE = @MFEM_USE_MESQUITE@
|
||||
MFEM_USE_SUITESPARSE = @MFEM_USE_SUITESPARSE@
|
||||
MFEM_USE_SUPERLU = @MFEM_USE_SUPERLU@
|
||||
MFEM_USE_SUPERLU5 = @MFEM_USE_SUPERLU5@
|
||||
@@ -57,7 +58,6 @@ MFEM_USE_UMPIRE = @MFEM_USE_UMPIRE@
|
||||
MFEM_USE_SIMD = @MFEM_USE_SIMD@
|
||||
MFEM_USE_ADIOS2 = @MFEM_USE_ADIOS2@
|
||||
MFEM_USE_MKL_CPARDISO = @MFEM_USE_MKL_CPARDISO@
|
||||
MFEM_USE_MKL_PARDISO = @MFEM_USE_MKL_PARDISO@
|
||||
MFEM_USE_MOONOLITH = @MFEM_USE_MOONOLITH@
|
||||
MFEM_USE_ADFORWARD = @MFEM_USE_ADFORWARD@
|
||||
MFEM_USE_CODIPACK = @MFEM_USE_CODIPACK@
|
||||
|
||||
+16
-14
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -19,7 +19,6 @@ if (NOT CMAKE_BUILD_TYPE)
|
||||
endif()
|
||||
|
||||
# MFEM options. Set to mimic the default "defaults.mk" file.
|
||||
option(BUILD_SHARED_LIBS "Enable shared library build of MFEM" OFF)
|
||||
option(MFEM_USE_MPI "Enable MPI parallel build" OFF)
|
||||
option(MFEM_USE_METIS "Enable METIS usage" ${MFEM_USE_MPI})
|
||||
option(MFEM_USE_EXCEPTIONS "Enable the use of exceptions" OFF)
|
||||
@@ -31,6 +30,7 @@ option(MFEM_USE_OPENMP "Enable the OpenMP backend" OFF)
|
||||
option(MFEM_USE_LEGACY_OPENMP "Enable legacy OpenMP usage" OFF)
|
||||
option(MFEM_USE_MEMALLOC "Enable the internal MEMALLOC option." ON)
|
||||
option(MFEM_USE_SUNDIALS "Enable SUNDIALS usage" OFF)
|
||||
option(MFEM_USE_MESQUITE "Enable MESQUITE usage" OFF)
|
||||
option(MFEM_USE_SUITESPARSE "Enable SuiteSparse usage" OFF)
|
||||
option(MFEM_USE_SUPERLU "Enable SuperLU_DIST usage" OFF)
|
||||
option(MFEM_USE_SUPERLU5 "Use the old SuperLU_DIST 5.1 version" OFF)
|
||||
@@ -60,7 +60,6 @@ option(MFEM_USE_ADIOS2 "Enable ADIOS2" OFF)
|
||||
option(MFEM_USE_CALIPER "Enable Caliper support" OFF)
|
||||
option(MFEM_USE_ALGOIM "Enable Algoim support" OFF)
|
||||
option(MFEM_USE_MKL_CPARDISO "Enable MKL CPardiso" OFF)
|
||||
option(MFEM_USE_MKL_PARDISO "Enable MKL Pardiso" OFF)
|
||||
option(MFEM_USE_ADFORWARD "Enable forward mode for AD" OFF)
|
||||
option(MFEM_USE_CODIPACK "Enable automatic differentiation (AD) using CoDiPack" OFF)
|
||||
option(MFEM_USE_BENCHMARK "Enable Google Benchmark" OFF)
|
||||
@@ -125,6 +124,9 @@ set(SUNDIALS_DIR "${MFEM_DIR}/../sundials-5.0.0/instdir" CACHE PATH
|
||||
# set(SUNDIALS_REQUIRED_PACKAGES "SuiteSparse/KLU/AMD/BTF/COLAMD/config"
|
||||
# CACHE STRING "Additional packages required by SUNDIALS.")
|
||||
|
||||
set(MESQUITE_DIR "${MFEM_DIR}/../mesquite-2.99" CACHE PATH
|
||||
"Path to the Mesquite library.")
|
||||
|
||||
set(SuiteSparse_DIR "${MFEM_DIR}/../SuiteSparse" CACHE PATH
|
||||
"Path to the SuiteSparse library.")
|
||||
set(SuiteSparse_REQUIRED_PACKAGES "BLAS" "METIS"
|
||||
@@ -135,18 +137,16 @@ set(ParMETIS_DIR "${MFEM_DIR}/../parmetis-4.0.3" CACHE PATH
|
||||
set(ParMETIS_REQUIRED_PACKAGES "METIS" CACHE STRING
|
||||
"Additional packages required by ParMETIS.")
|
||||
|
||||
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_8.1.2" CACHE PATH
|
||||
set(SuperLUDist_DIR "${MFEM_DIR}/../SuperLU_DIST_6.3.1" CACHE PATH
|
||||
"Path to the SuperLU_DIST library.")
|
||||
# SuperLU_DIST may also depend on "OpenMP", depending on how it was compiled.
|
||||
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "ParMETIS" "METIS"
|
||||
"LAPACK" "BLAS" CACHE STRING
|
||||
set(SuperLUDist_REQUIRED_PACKAGES "MPI" "BLAS" "ParMETIS" CACHE STRING
|
||||
"Additional packages required by SuperLU_DIST.")
|
||||
|
||||
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.5.0" CACHE PATH
|
||||
set(MUMPS_DIR "${MFEM_DIR}/../MUMPS_5.2.0" CACHE PATH
|
||||
"Path to the MUMPS library.")
|
||||
# MUMPS may also depend on "OpenMP", depending on how it was compiled.
|
||||
set(MUMPS_REQUIRED_PACKAGES "MPI" "MPI_Fortran" "ParMETIS" "METIS"
|
||||
"ScaLAPACK" "LAPACK" "BLAS" CACHE STRING
|
||||
# Packages required by MUMPS, depending on how it was compiled.
|
||||
set(MUMPS_REQUIRED_PACKAGES "MPI" "BLAS" "METIS" "ScaLAPACK" CACHE STRING
|
||||
"Additional packages required by MUMPS.")
|
||||
# If the MPI package does not find all required Fortran libraries:
|
||||
# set(MUMPS_REQUIRED_LIBRARIES "gfortran" "mpi_mpifh" CACHE STRING
|
||||
@@ -188,7 +188,6 @@ set(GNUTLS_DIR "" CACHE PATH "Path to the GnuTLS library.")
|
||||
|
||||
set(GSLIB_DIR "" CACHE PATH "Path to the GSLIB library.")
|
||||
|
||||
set(HDF5_DIR "/usr" CACHE PATH "Path to the HDF5 library.")
|
||||
set(NETCDF_DIR "" CACHE PATH "Path to the NetCDF library.")
|
||||
set(NetCDF_REQUIRED_PACKAGES "HDF5/C/HL" CACHE STRING
|
||||
"Additional packages required by NetCDF.")
|
||||
@@ -229,16 +228,19 @@ set(MKL_CPARDISO_DIR "" CACHE STRING "MKL installation path.")
|
||||
set(MKL_MPI_WRAPPER_LIB "mkl_blacs_mpich_lp64" CACHE STRING "MKL MPI wrapper library")
|
||||
set(MKL_LIBRARY_DIR "" CACHE STRING "Custom library subdirectory")
|
||||
|
||||
set(MKL_PARDISO_DIR "" CACHE STRING "MKL installation path.")
|
||||
|
||||
set(OCCA_DIR "${MFEM_DIR}/../occa" CACHE PATH "Path to OCCA")
|
||||
set(RAJA_DIR "${MFEM_DIR}/../raja" CACHE PATH "Path to RAJA")
|
||||
# If RAJA is built with external CAMP:
|
||||
# set(RAJA_REQUIRED_PACKAGES "camp"
|
||||
# CACHE STRING "Packages that RAJA depends on.")
|
||||
# set(camp_DIR "${MFEM_DIR}/../camp/lib/cmake/camp"
|
||||
# CACHE PATH "Path to CAMP CMake files.")
|
||||
set(CEED_DIR "${MFEM_DIR}/../libCEED" CACHE PATH "Path to libCEED")
|
||||
set(UMPIRE_DIR "${MFEM_DIR}/../umpire" CACHE PATH "Path to Umpire")
|
||||
set(CALIPER_DIR "${MFEM_DIR}/../caliper" CACHE PATH "Path to Caliper")
|
||||
set(BLITZ_DIR "${MFEM_DIR}/../blitz" CACHE PATH "Path to Blitz")
|
||||
set(ALGOIM_DIR "${MFEM_DIR}/../algoim" CACHE PATH "Path to Algoim")
|
||||
set(Algoim_REQUIRED_PACKAGES "Blitz" CACHE STRING
|
||||
set(ALGOIM_REQUIRED_PACKAGES "BLITZ" CACHE STRING
|
||||
"Packages that ALGOIM depends on.")
|
||||
|
||||
set(BENCHMARK_DIR "${MFEM_DIR}/../google-benchmark" CACHE PATH
|
||||
|
||||
+21
-52
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -58,7 +58,7 @@ HIP_CXX = hipcc
|
||||
# example: gfx600 (tahiti), gfx700 (kaveri), gfx701 (hawaii), gfx801 (carrizo),
|
||||
# gfx900, gfx1010, etc.
|
||||
HIP_ARCH = gfx900
|
||||
HIP_FLAGS = --offload-arch=$(HIP_ARCH)
|
||||
HIP_FLAGS = --amdgpu-target=$(HIP_ARCH)
|
||||
HIP_XCOMPILER =
|
||||
HIP_XLINKER = -Wl,
|
||||
|
||||
@@ -131,6 +131,7 @@ MFEM_USE_LEGACY_OPENMP = NO
|
||||
MFEM_USE_MEMALLOC = YES
|
||||
MFEM_TIMER_TYPE = $(if $(NOTMAC),2,4)
|
||||
MFEM_USE_SUNDIALS = NO
|
||||
MFEM_USE_MESQUITE = NO
|
||||
MFEM_USE_SUITESPARSE = NO
|
||||
MFEM_USE_SUPERLU = NO
|
||||
MFEM_USE_SUPERLU5 = NO
|
||||
@@ -160,7 +161,6 @@ MFEM_USE_UMPIRE = NO
|
||||
MFEM_USE_SIMD = NO
|
||||
MFEM_USE_ADIOS2 = NO
|
||||
MFEM_USE_MKL_CPARDISO = NO
|
||||
MFEM_USE_MKL_PARDISO = NO
|
||||
MFEM_USE_MOONOLITH = NO
|
||||
MFEM_USE_ADFORWARD = NO
|
||||
MFEM_USE_CODIPACK = NO
|
||||
@@ -179,7 +179,7 @@ ifeq ($(MFEM_USE_MPI)$(MFEM_USE_HIP),YESYES)
|
||||
endif
|
||||
|
||||
# ROCM/HIP directory such that ROCM/HIP libraries like rocsparse and rocrand are
|
||||
# found in $(HIP_DIR)/lib, usually as links. Typically, this directory is of
|
||||
# found in $(HIP_DIR)/lib, usually as links. Typically, this directoory is of
|
||||
# the form /opt/rocm-X.Y.Z which is called ROCM_PATH by hipconfig.
|
||||
ifeq ($(MFEM_USE_HIP),YES)
|
||||
HIP_DIR := $(patsubst %/,%,$(dir $(shell which $(HIP_CXX))))
|
||||
@@ -251,28 +251,26 @@ POSIX_CLOCKS_LIB = -lrt
|
||||
# SUNDIALS library configuration
|
||||
# For sundials_nvecmpiplusx and nvecparallel remember to build with MPI_ENABLE=ON
|
||||
# and modify cmake variables for hypre for sundials
|
||||
SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
|
||||
# SUNDIALS >= 6.4.0 requires C++14:
|
||||
ifeq ($(MFEM_USE_SUNDIALS),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
|
||||
SUNDIALS_LIB = $(XLINKER)-rpath,$(SUNDIALS_DIR)/lib64\
|
||||
$(XLINKER)-rpath,$(SUNDIALS_DIR)/lib\
|
||||
-L$(SUNDIALS_DIR)/lib64 -L$(SUNDIALS_DIR)/lib\
|
||||
SUNDIALS_DIR = @MFEM_DIR@/../sundials-5.0.0/instdir
|
||||
SUNDIALS_OPT = -I$(SUNDIALS_DIR)/include
|
||||
SUNDIALS_LIBDIR = $(wildcard $(SUNDIALS_DIR)/lib*)
|
||||
SUNDIALS_LIB = $(XLINKER)-rpath,$(SUNDIALS_LIBDIR) -L$(SUNDIALS_LIBDIR)\
|
||||
-lsundials_arkode -lsundials_cvodes -lsundials_nvecserial -lsundials_kinsol
|
||||
|
||||
ifeq ($(MFEM_USE_MPI),YES)
|
||||
SUNDIALS_LIB += -lsundials_nvecparallel -lsundials_nvecmpiplusx
|
||||
endif
|
||||
ifeq ($(MFEM_USE_CUDA),YES)
|
||||
SUNDIALS_LIB += -lsundials_nveccuda
|
||||
endif
|
||||
ifeq ($(MFEM_USE_HIP),YES)
|
||||
SUNDIALS_LIB += -lsundials_nvechip
|
||||
endif
|
||||
# If SUNDIALS was built with KLU:
|
||||
# MFEM_USE_SUITESPARSE = YES
|
||||
|
||||
# MESQUITE library configuration
|
||||
MESQUITE_DIR = @MFEM_DIR@/../mesquite-2.99
|
||||
MESQUITE_OPT = -I$(MESQUITE_DIR)/include
|
||||
MESQUITE_LIB = -L$(MESQUITE_DIR)/lib -lmesquite
|
||||
|
||||
# SuiteSparse library configuration
|
||||
LIB_RT = $(if $(NOTMAC),-lrt,)
|
||||
SUITESPARSE_DIR = @MFEM_DIR@/../SuiteSparse
|
||||
@@ -288,10 +286,10 @@ ifeq ($(MFEM_USE_SUPERLU5),YES)
|
||||
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib -L$(SUPERLU_DIR)/lib\
|
||||
-lsuperlu_dist_5.1.0
|
||||
else
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_8.1.2
|
||||
SUPERLU_DIR = @MFEM_DIR@/../SuperLU_DIST_6.3.1
|
||||
SUPERLU_OPT = -I$(SUPERLU_DIR)/include
|
||||
SUPERLU_LIB = $(XLINKER)-rpath,$(SUPERLU_DIR)/lib64 -L$(SUPERLU_DIR)/lib64\
|
||||
-lsuperlu_dist $(LAPACK_LIB)
|
||||
-lsuperlu_dist -lblas
|
||||
endif
|
||||
|
||||
# SCOTCH library configuration (required by STRUMPACK <= v2.1.0, optional in
|
||||
@@ -311,20 +309,17 @@ SCALAPACK_LIB = -L$(SCALAPACK_DIR)/lib -lscalapack $(LAPACK_LIB)
|
||||
MPI_FORTRAN_LIB = -lmpifort
|
||||
# OpenMPI:
|
||||
# MPI_FORTRAN_LIB = -lmpi_mpifh
|
||||
# Additional Fortran library:
|
||||
# Additional Fortan library:
|
||||
# MPI_FORTRAN_LIB += -lgfortran
|
||||
|
||||
# MUMPS library configuration
|
||||
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.5.0
|
||||
MUMPS_DIR = @MFEM_DIR@/../MUMPS_5.2.0
|
||||
MUMPS_OPT = -I$(MUMPS_DIR)/include
|
||||
MUMPS_LIB = $(XLINKER)-rpath,$(MUMPS_DIR)/lib -L$(MUMPS_DIR)/lib -ldmumps\
|
||||
-lmumps_common -lpord $(SCALAPACK_LIB) $(LAPACK_LIB) $(MPI_FORTRAN_LIB)
|
||||
|
||||
# STRUMPACK library configuration
|
||||
STRUMPACK_DIR = @MFEM_DIR@/../STRUMPACK-build
|
||||
ifeq ($(MFEM_USE_STRUMPACK),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
STRUMPACK_OPT = -I$(STRUMPACK_DIR)/include $(SCOTCH_OPT)
|
||||
# If STRUMPACK was build with OpenMP support, the following may be need:
|
||||
# STRUMPACK_OPT += $(OPENMP_OPT)
|
||||
@@ -477,16 +472,7 @@ OCCA_LIB = $(XLINKER)-rpath,$(OCCA_DIR)/lib -L$(OCCA_DIR)/lib -locca
|
||||
# CALIPER library configuration
|
||||
CALIPER_DIR = @MFEM_DIR@/../caliper
|
||||
CALIPER_OPT = -I$(CALIPER_DIR)/include
|
||||
CALIPER_LIB = $(XLINKER)-rpath,$(CALIPER_DIR)/lib64 $(XLINKER)-rpath,$(CALIPER_DIR)/lib -L$(CALIPER_DIR)/lib64 -L$(CALIPER_DIR)/lib -lcaliper
|
||||
|
||||
ifdef ADIAK_DIR
|
||||
CALIPER_OPT += -I$(ADIAK_DIR)/include
|
||||
CALIPER_LIB += $(XLINKER)-rpath,$(ADIAK_DIR)/lib64 $(XLINKER)-rpath,$(ADIAK_DIR)/lib -L$(ADIAK_DIR)/lib64 -L$(ADIAK_DIR)/lib -ladiak
|
||||
endif
|
||||
ifdef GOTCHA_DIR
|
||||
CALIPER_OPT += -I$(GOTCHA_DIR)/include
|
||||
CALIPER_LIB += $(XLINKER)-rpath,$(GOTCHA_DIR)/lib64 $(XLINKER)-rpath,$(GOTCHA_DIR)/lib -L$(GOTCHA_DIR)/lib64 -L$(GOTCHA_DIR)/lib -lgotcha
|
||||
endif
|
||||
CALIPER_LIB = $(XLINKER)-rpath,$(CALIPER_DIR)/lib64 -L$(CALIPER_DIR)/lib64 -lcaliper
|
||||
|
||||
# BLITZ library configuration
|
||||
BLITZ_DIR = @MFEM_DIR@/../blitz
|
||||
@@ -509,29 +495,20 @@ CEED_OPT = -I$(CEED_DIR)/include
|
||||
CEED_LIB = $(XLINKER)-rpath,$(CEED_DIR)/lib -L$(CEED_DIR)/lib -lceed
|
||||
|
||||
# RAJA library configuration
|
||||
ifeq ($(MFEM_USE_RAJA),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
RAJA_DIR = @MFEM_DIR@/../raja
|
||||
RAJA_OPT = -I$(RAJA_DIR)/include
|
||||
ifdef CUB_DIR
|
||||
RAJA_OPT += -I$(CUB_DIR)
|
||||
endif
|
||||
|
||||
CAMP_LIB = -lcamp
|
||||
ifdef CAMP_DIR
|
||||
RAJA_OPT += -I$(CAMP_DIR)/include
|
||||
CAMP_LIB = $(XLINKER)-rpath,$(CAMP_DIR)/lib -L$(CAMP_DIR)/lib -lcamp
|
||||
endif
|
||||
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA $(CAMP_LIB)
|
||||
RAJA_LIB = $(XLINKER)-rpath,$(RAJA_DIR)/lib -L$(RAJA_DIR)/lib -lRAJA
|
||||
|
||||
# UMPIRE library configuration
|
||||
ifeq ($(MFEM_USE_UMPIRE),YES)
|
||||
BASE_FLAGS = -std=c++14
|
||||
endif
|
||||
UMPIRE_DIR = @MFEM_DIR@/../umpire
|
||||
UMPIRE_OPT = -I$(UMPIRE_DIR)/include $(if $(CAMP_DIR), -I$(CAMP_DIR)/include)
|
||||
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire $(CAMP_LIB)
|
||||
UMPIRE_LIB = -L$(UMPIRE_DIR)/lib -lumpire
|
||||
|
||||
# MKL CPardiso library configuration
|
||||
MKL_CPARDISO_DIR ?=
|
||||
@@ -542,14 +519,6 @@ MKL_CPARDISO_LIB = $(XLINKER)-rpath,$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-L$(MKL_CPARDISO_DIR)/$(MKL_LIBRARY_SUBDIR) -l$(MKL_MPI_WRAPPER)\
|
||||
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
|
||||
|
||||
# MKL Pardiso library configuration
|
||||
MKL_PARDISO_DIR ?=
|
||||
MKL_LIBRARY_SUBDIR ?= lib
|
||||
MKL_PARDISO_OPT = -I$(MKL_PARDISO_DIR)/include
|
||||
MKL_PARDISO_LIB = $(XLINKER)-rpath,$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-L$(MKL_PARDISO_DIR)/$(MKL_LIBRARY_SUBDIR)\
|
||||
-lmkl_intel_lp64 -lmkl_sequential -lmkl_core
|
||||
|
||||
# PARELAG library configuration
|
||||
PARELAG_DIR = @MFEM_DIR@/../parelag
|
||||
PARELAG_OPT = -I$(PARELAG_DIR)/src -I$(PARELAG_DIR)/build/src
|
||||
|
||||
@@ -19,7 +19,9 @@ RUN apt-get update && \
|
||||
apt-get install -y libcurl4-openssl-dev libssl-dev
|
||||
|
||||
ENV PATH=$PATH:/opt/mfem-view/bin
|
||||
ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mfem-view/lib:/opt/mfem-view/lib64
|
||||
ENV DEBIAN_FRONTEND=noninteractive
|
||||
|
||||
# The user will see the view on shell into the container
|
||||
WORKDIR /opt/mfem-view
|
||||
ENTRYPOINT ["/bin/bash"]
|
||||
|
||||
@@ -34,14 +34,14 @@ RUN cd /opt/mfem-env && \
|
||||
. /opt/spack/share/spack/setup-env.sh && \
|
||||
spack env activate . && \
|
||||
spack develop --path /code mfem@master+examples+miniapps && \
|
||||
spack add mfem@master+examples+miniapps && \
|
||||
spack install
|
||||
spack add mfem@master+examples+miniapps # && \
|
||||
# spack install
|
||||
|
||||
# ensure mfem always on various paths
|
||||
RUN cd /opt/mfem-env && \
|
||||
spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
|
||||
#RUN cd /opt/mfem-env && \
|
||||
# spack env activate --sh -d . >> /etc/profile.d/z10_spack_environment.sh
|
||||
|
||||
# Present the software install when we shell in
|
||||
# The view is at /opt/mfem-env/.spack-env/view
|
||||
WORKDIR /opt/software
|
||||
ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
|
||||
#WORKDIR /opt/software
|
||||
#ENTRYPOINT ["/bin/bash", "--rcfile", "/etc/profile", "-l", "-c"]
|
||||
|
||||
+46
-108
@@ -7,31 +7,21 @@ You can use this image for a demo of using mfem! 🎉️
|
||||
Updated containers are built and deployed on merges to the main branch and releases.
|
||||
If you want to request a build on demand, you can [manually run the workflow](https://docs.github.com/en/actions/managing-workflow-runs/manually-running-a-workflow) thanks to the workflow dispatch event.
|
||||
|
||||
## Usage
|
||||
### Usage
|
||||
|
||||
We provide two containers, which you can either build or use directly from
|
||||
[GitHub packages](https://github.com/orgs/mfem/packages?repo_name=mfem).
|
||||
|
||||
- `ghcr.io/mfem/mfem-ubuntu-base`: a "build from scratch" for mfem
|
||||
- `ghcr.io/mfem/mfem-ubuntu`: a quick build that uses the base container
|
||||
|
||||
In the above, "ghcr.io" means "GitHub Container Registry" and
|
||||
Here is how to build the container. Note that we build so it belongs to the same
|
||||
namespace as the repository here. "ghcr.io" means "GitHub Container Registry" and
|
||||
is the [GitHub packages](https://github.com/features/packages) registry that supports
|
||||
Docker images and other OCI artifacts.
|
||||
|
||||
### Ubuntu
|
||||
|
||||
> Use or build this container for a multi-stage, slimmer base to develop on top of mfem
|
||||
|
||||
Note that this container is provided on GitHub packages [here](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu)
|
||||
so you don't need to build it. However, if you want to, you can do the following:
|
||||
Docker images and other OCI artifacts. From the root of the repository:
|
||||
|
||||
```bash
|
||||
$ docker build -f config/docker/Dockerfile -t ghcr.io/mfem/mfem-ubuntu .
|
||||
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
|
||||
```
|
||||
|
||||
Note that this will pull the base image. If you want to rebuild it, see [ubuntu base](#ubuntu-base)
|
||||
below. Once you have built (or prefer to pull) you can shell into the container as follows:
|
||||
### Shell Ubuntu
|
||||
|
||||
To shell into the container:
|
||||
|
||||
```bash
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu
|
||||
@@ -47,13 +37,39 @@ bin etc include lib libexec sbin share var
|
||||
- Examples are in share/mfem/examples
|
||||
- Examples are in share/mfem/miniapps
|
||||
|
||||
Using this container, if you want to develop a tool that _uses_ mfem, you can find the libraries / includes in:
|
||||
You can read more about interaction with these examples and miniapps below.
|
||||
|
||||
### Shell Ubuntu Base
|
||||
|
||||
To shell into the container:
|
||||
|
||||
```bash
|
||||
$ ls include/ | grep mfem
|
||||
mfem
|
||||
mfem-performance.hpp
|
||||
mfem.hpp
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
|
||||
```
|
||||
|
||||
Off the bat, you can see mfem libraries are in your path so you can jump into development:
|
||||
|
||||
```bash
|
||||
env | grep mfem
|
||||
```
|
||||
```bash
|
||||
PKG_CONFIG_PATH=/opt/mfem-env/.spack-env/view/lib/pkgconfig:/opt/mfem-env/.spack-env/view/share/pkgconfig:/opt/mfem-env/.spack-env/view/lib64/pkgconfig
|
||||
PWD=/opt/mfem-env
|
||||
MANPATH=/opt/mfem-env/.spack-env/view/share/man:/opt/mfem-env/.spack-env/view/man:
|
||||
CMAKE_PREFIX_PATH=/opt/mfem-env/.spack-env/view
|
||||
SPACK_ENV=/opt/mfem-env
|
||||
ACLOCAL_PATH=/opt/mfem-env/.spack-env/view/share/aclocal
|
||||
LD_LIBRARY_PATH=/opt/mfem-env/.spack-env/view/lib:/opt/mfem-env/.spack-env/view/lib64
|
||||
PATH=/opt/mfem-env/.spack-env/view/bin:/opt/view/bin:/opt/spack/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
|
||||
```
|
||||
|
||||
#### Examples and MiniApps
|
||||
|
||||
If you want to develop a tool that _uses_ mfem, you can find the built libraries in:
|
||||
|
||||
```
|
||||
$ ls /opt/mfem-env/.spack-env/view/
|
||||
bin etc include lib libexec sbin share var
|
||||
```
|
||||
|
||||
And yes, this is the working directory when you shell into the container!
|
||||
@@ -63,16 +79,6 @@ You can find the examples here:
|
||||
```bash
|
||||
cd share/mfem/examples
|
||||
```
|
||||
|
||||
Try quickly setting the `LD_LIBRARY_PATH` so we can see the shared libraries
|
||||
we need:
|
||||
|
||||
```bash
|
||||
export LD_LIBRARY_PATH=/opt/mfem-view/lib:$LD_LIBRARY_PATH
|
||||
```
|
||||
|
||||
And then run:
|
||||
|
||||
```bash
|
||||
$ ./ex0
|
||||
Options used:
|
||||
@@ -91,6 +97,7 @@ Number of unknowns: 101
|
||||
Average reduction factor = 0.140201
|
||||
```
|
||||
|
||||
Try running a few, and look at the associated .cpp file for the source code!
|
||||
You can also explore the "mini apps," also in share/mfem, but under miniapps.
|
||||
|
||||
```bash
|
||||
@@ -123,87 +130,18 @@ Rule:
|
||||
Applying rule...done.
|
||||
```
|
||||
|
||||
Have fun! As a reminder, this container is ideal for developing your own
|
||||
applications that might use mfem, or having a nice environment to test out
|
||||
examples.
|
||||
Have fun!
|
||||
|
||||
|
||||
### Ubuntu Base
|
||||
|
||||
> Use this build for a development environment with spack and mfem
|
||||
|
||||
This container is also [provided on GitHub packages](https://github.com/mfem/mfem/pkgs/container/mfem-ubuntu-base),
|
||||
however you can build it locally too:
|
||||
#### Your own App
|
||||
If you want to develop with your own code base
|
||||
(and mfem as is in the container) you can bind to somewhere else in the container (e.g., src)
|
||||
|
||||
```bash
|
||||
$ docker build -f config/docker/Dockerfile.base -t ghcr.io/mfem/mfem-ubuntu-base .
|
||||
```
|
||||
|
||||
To shell into the container:
|
||||
|
||||
```bash
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base bash
|
||||
```
|
||||
|
||||
Change directory to the mfem environment, setup spack, and activate the environment:
|
||||
|
||||
```bash
|
||||
source /opt/spack/share/spack/setup-env.sh
|
||||
cd /opt/mfem-env/
|
||||
spack env activate .
|
||||
```
|
||||
|
||||
Note that this environment is installing to the view at `/opt/view`. Since the environment
|
||||
knows to install mfem from `/code` this means that you could make changes in the container (or bind
|
||||
`/code` to your container) and then update spack:
|
||||
|
||||
```bash
|
||||
# Note that concretization takes a hot minute!
|
||||
$ spack install
|
||||
```
|
||||
|
||||
And if you want to load mfem:
|
||||
|
||||
```bash
|
||||
$ spack load mfem
|
||||
$ env | grep mfem
|
||||
```
|
||||
|
||||
In this development container, you can find the examples and miniapps alongside
|
||||
mfem under `/code`:
|
||||
|
||||
```bash
|
||||
cd /code/examples
|
||||
```
|
||||
```bash
|
||||
$ ./ex0
|
||||
```
|
||||
```console
|
||||
Options used:
|
||||
--mesh ../data/star.mesh
|
||||
--order 1
|
||||
Number of unknowns: 101
|
||||
Iteration : 0 (B r, r) = 0.184259
|
||||
Iteration : 1 (B r, r) = 0.102754
|
||||
Iteration : 2 (B r, r) = 0.00558141
|
||||
Iteration : 3 (B r, r) = 1.5247e-05
|
||||
Iteration : 4 (B r, r) = 1.13807e-07
|
||||
Iteration : 5 (B r, r) = 6.27231e-09
|
||||
Iteration : 6 (B r, r) = 3.76268e-11
|
||||
Iteration : 7 (B r, r) = 6.07423e-13
|
||||
Iteration : 8 (B r, r) = 4.10615e-15
|
||||
Average reduction factor = 0.140201
|
||||
```
|
||||
|
||||
This container is likely ideal for someone that wants to develop mfem itself.
|
||||
For other use cases, we recommend using the slimmer image. As an example,
|
||||
if you want to develop with your own code base (and mfem as is in the container)
|
||||
you can bind to somewhere else in the container (e.g., src)
|
||||
|
||||
```bash
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/code bash
|
||||
$ docker run -it ghcr.io/mfem/mfem-ubuntu-base -v $PWD:/src bash
|
||||
```
|
||||
|
||||
In the above, we can pretend your project is in the present working directory (PWD) and we are
|
||||
binding to source. You can then use the mfem in the container for development, and if you
|
||||
want to distribute your library or app in a container, you can use the mfem container as the base.
|
||||
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
|
||||
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -35,8 +35,8 @@ cd $(git rev-parse --show-toplevel)
|
||||
# copyright check
|
||||
copyright=true
|
||||
if [[ "${option}" == "--copyright" || "${option}" == "" ]]; then
|
||||
if git grep -n "^\(#\|//\).*Copyright.*2010-20\(2[^3]\|[^2].\)" > matches.txt; then
|
||||
echo "Please update the following files to Copyright (c) 2010-2023:"
|
||||
if git grep -l "^\(#\|//\).*\(\-2021\|\ 2010,\)" > matches.txt; then
|
||||
echo "Please update the following files to Copyright (c) 2010-2022:"
|
||||
cat matches.txt
|
||||
copyright=false
|
||||
fi
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/bin/bash
|
||||
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
@@ -138,7 +138,7 @@ groups_parallel=(
|
||||
'"meshing"
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"pmesh-optimizer.cpp pmesh-fitting.cpp pminimal-surface.cpp"'
|
||||
"pmesh-optimizer.cpp pminimal-surface.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
@@ -227,7 +227,7 @@ groups_all=(
|
||||
"Meshing miniapps:"
|
||||
"miniapps/meshing"
|
||||
"mobius-strip.cpp klein-bottle.cpp extruder.cpp toroid.cpp
|
||||
{,p}mesh-optimizer.cpp pmesh-fitting.cpp {,p}minimal-surface.cpp"'
|
||||
{,p}mesh-optimizer.cpp {,p}minimal-surface.cpp"'
|
||||
'"electromagnetics"
|
||||
"Electromagnetics miniapps:"
|
||||
"miniapps/electromagnetics"
|
||||
@@ -554,14 +554,15 @@ function go()
|
||||
local cmd_line="${1##+( )}"
|
||||
cmd_line="${cmd_line%%+( )}"
|
||||
shopt -u extglob
|
||||
eval local cmd=(${cmd_line})
|
||||
local res=""
|
||||
echo $sep
|
||||
echo "<${group}>" "${cmd_line}"
|
||||
echo $sep
|
||||
if [ "${timing}" == "yes" ]; then
|
||||
timed_run eval "${cmd_line}"
|
||||
timed_run "${cmd[@]}"
|
||||
else
|
||||
eval "${cmd_line}"
|
||||
"${cmd[@]}"
|
||||
fi
|
||||
if [ "$?" -eq 0 ]; then
|
||||
res="${green} OK ${none}"
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
// Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
// Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -3,5 +3,5 @@
|
||||
"version-string": "5.1.0",
|
||||
"port-version": 0,
|
||||
"description": "Serial Graph Partitioning and Fill-reducing Matrix Ordering",
|
||||
"homepage": "http://glaros.dtc.umn.edu/gkhome/metis/metis/overview"
|
||||
"homepage": "https://glaros.dtc.umn.edu/gkhome/metis/metis/overview"
|
||||
}
|
||||
|
||||
@@ -1,48 +0,0 @@
|
||||
MFEM mesh v1.0
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
#
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
elements
|
||||
6
|
||||
1 3 0 1 4 3
|
||||
1 3 2 3 6 5
|
||||
1 2 3 4 8
|
||||
1 2 4 7 8
|
||||
1 2 7 6 8
|
||||
1 2 6 3 8
|
||||
|
||||
boundary
|
||||
8
|
||||
1 1 0 1
|
||||
2 1 1 4
|
||||
3 1 4 7
|
||||
4 1 7 6
|
||||
5 1 6 5
|
||||
6 1 5 2
|
||||
7 1 2 3
|
||||
8 1 3 0
|
||||
|
||||
vertices
|
||||
9
|
||||
2
|
||||
0.5 0
|
||||
1 0
|
||||
0 0.5
|
||||
0.5 0.5
|
||||
1 0.5
|
||||
0 1
|
||||
0.5 1
|
||||
1 1
|
||||
0.75 0.75
|
||||
@@ -1,44 +0,0 @@
|
||||
MFEM mesh v1.0
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
#
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
elements
|
||||
3
|
||||
1 3 0 1 4 3
|
||||
1 3 2 3 6 5
|
||||
1 3 3 4 7 6
|
||||
|
||||
boundary
|
||||
8
|
||||
1 1 0 1
|
||||
2 1 1 4
|
||||
3 1 4 7
|
||||
4 1 7 6
|
||||
5 1 6 5
|
||||
6 1 5 2
|
||||
7 1 2 3
|
||||
8 1 3 0
|
||||
|
||||
vertices
|
||||
8
|
||||
2
|
||||
0.5 0
|
||||
1 0
|
||||
0 0.5
|
||||
0.5 0.5
|
||||
1 0.5
|
||||
0 1
|
||||
0.5 1
|
||||
1 1
|
||||
@@ -1,322 +0,0 @@
|
||||
MFEM mesh v1.0
|
||||
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
# TRIANGLE = 2
|
||||
# SQUARE = 3
|
||||
# TETRAHEDRON = 4
|
||||
# CUBE = 5
|
||||
# PRISM = 6
|
||||
# PYRAMID = 7
|
||||
#
|
||||
|
||||
dimension
|
||||
2
|
||||
|
||||
elements
|
||||
26
|
||||
1 2 1 18 0
|
||||
1 3 1 3 19 18
|
||||
2 3 3 6 20 19
|
||||
1 3 6 9 21 20
|
||||
2 3 9 12 22 21
|
||||
1 3 12 15 23 22
|
||||
2 2 23 15 24
|
||||
1 2 1 4 3
|
||||
2 3 4 7 6 3
|
||||
1 3 7 10 9 6
|
||||
2 3 10 13 12 9
|
||||
1 3 13 16 15 12
|
||||
2 3 16 25 24 15
|
||||
1 3 2 5 4 1
|
||||
1 3 5 8 7 4
|
||||
1 3 8 11 10 7
|
||||
1 3 11 14 13 10
|
||||
1 3 14 17 16 13
|
||||
1 2 25 16 17
|
||||
1 3 18 19 27 26
|
||||
2 3 19 20 28 27
|
||||
1 3 20 21 29 28
|
||||
2 3 21 22 30 29
|
||||
1 3 22 23 31 30
|
||||
2 3 23 24 32 31
|
||||
1 3 24 25 33 32
|
||||
|
||||
boundary
|
||||
18
|
||||
1 1 28 27
|
||||
2 1 30 29
|
||||
3 1 32 31
|
||||
4 1 0 1
|
||||
4 1 1 2
|
||||
4 1 2 5
|
||||
4 1 5 8
|
||||
4 1 8 11
|
||||
4 1 11 14
|
||||
4 1 14 17
|
||||
4 1 17 25
|
||||
4 1 25 33
|
||||
4 1 33 32
|
||||
4 1 31 30
|
||||
4 1 29 28
|
||||
4 1 27 26
|
||||
4 1 26 18
|
||||
4 1 18 0
|
||||
|
||||
vertices
|
||||
34
|
||||
|
||||
nodes
|
||||
FiniteElementSpace
|
||||
FiniteElementCollection: H1_2D_P3
|
||||
VDim: 2
|
||||
Ordering: 1
|
||||
|
||||
0 0
|
||||
0.53125 0
|
||||
1 0
|
||||
0.53125 0.09375
|
||||
0.5625 0.09375
|
||||
1 0.09375
|
||||
0.53125 0.21875
|
||||
0.6875 0.21875
|
||||
1 0.1875
|
||||
0.53125 0.25
|
||||
0.71875 0.25
|
||||
1 0.25
|
||||
0.53125 0.375
|
||||
0.84375 0.375
|
||||
1 0.34375
|
||||
0.53125 0.40625
|
||||
0.875 0.40625
|
||||
1 0.40625
|
||||
0 0.53125
|
||||
0.09375 0.53125
|
||||
0.21875 0.53125
|
||||
0.25 0.53125
|
||||
0.375 0.53125
|
||||
0.40625 0.53125
|
||||
0.53125 0.53125
|
||||
1 0.53125
|
||||
0 1
|
||||
0.09375 1
|
||||
0.21875 1
|
||||
0.25 1
|
||||
0.375 1
|
||||
0.40625 1
|
||||
0.53125 1
|
||||
1 1
|
||||
|
||||
0.33175106835972 0.094168845750364
|
||||
0.094168845750364 0.33175106835972
|
||||
-5.1759634627347e-17 0.14683388869532
|
||||
6.5255471622478e-17 0.38441611130468
|
||||
0.14683388869532 6.0713766400335e-17
|
||||
0.38441611130468 8.2458945395444e-19
|
||||
0.53125 0.025911862710939
|
||||
0.53125 0.067838137289061
|
||||
0.34721731046049 0.13433915461926
|
||||
0.13433915461926 0.34721731046049
|
||||
0.025911862710939 0.53125
|
||||
0.067838137289061 0.53125
|
||||
0.53125 0.12829915028125
|
||||
0.53125 0.18420084971875
|
||||
0.39979807890035 0.24774225329947
|
||||
0.24774225329947 0.39979807890035
|
||||
0.12829915028125 0.53125
|
||||
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||||
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0.39761271242969 0.8704406864453
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||||
0.6608093135547 0.8704406864453
|
||||
0.8704406864453 0.8704406864453
|
||||
@@ -1,46 +0,0 @@
|
||||
MFEM NURBS mesh v1.0
|
||||
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
#
|
||||
# SEGMENT = 1
|
||||
# SQUARE = 3
|
||||
# CUBE = 5
|
||||
#
|
||||
|
||||
dimension
|
||||
1
|
||||
|
||||
elements
|
||||
1
|
||||
1 1 0 1
|
||||
|
||||
boundary
|
||||
2
|
||||
1 0 0
|
||||
2 0 1
|
||||
|
||||
edges
|
||||
1
|
||||
0 0 1
|
||||
|
||||
vertices
|
||||
2
|
||||
|
||||
knotvectors
|
||||
1
|
||||
1 2 0 0 1 1
|
||||
|
||||
weights
|
||||
1
|
||||
1
|
||||
|
||||
FiniteElementSpace
|
||||
FiniteElementCollection: NURBS1
|
||||
VDim: 1
|
||||
Ordering: 1
|
||||
|
||||
0
|
||||
1
|
||||
|
||||
|
||||
@@ -1,7 +1,7 @@
|
||||
MFEM mesh v1.0
|
||||
|
||||
#
|
||||
# MFEM Geometry Types (see mesh/geom.hpp):
|
||||
# MFEM Geomety Types (see mesh/geom.hpp):
|
||||
#
|
||||
# POINT = 0
|
||||
# SEGMENT = 1
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
@@ -38,7 +38,7 @@ PROJECT_NAME = "MFEM"
|
||||
# could be handy for archiving the generated documentation or if some version
|
||||
# control system is used.
|
||||
|
||||
PROJECT_NUMBER = v4.5.3
|
||||
PROJECT_NUMBER = v4.4.1
|
||||
|
||||
# Using the PROJECT_BRIEF tag one can provide an optional one line description
|
||||
# for a project that appears at the top of each page and should give viewer a
|
||||
@@ -763,58 +763,36 @@ INPUT = @MFEM_SOURCE_DIR@/doc/CodeDocumentation.dox \
|
||||
@MFEM_SOURCE_DIR@/config \
|
||||
@MFEM_SOURCE_DIR@/general \
|
||||
@MFEM_SOURCE_DIR@/linalg \
|
||||
@MFEM_SOURCE_DIR@/linalg/simd \
|
||||
@MFEM_SOURCE_DIR@/mesh \
|
||||
@MFEM_SOURCE_DIR@/mesh/submesh \
|
||||
@MFEM_SOURCE_DIR@/fem \
|
||||
@MFEM_SOURCE_DIR@/fem/ceed \
|
||||
@MFEM_SOURCE_DIR@/fem/ceed/integrators \
|
||||
@MFEM_SOURCE_DIR@/fem/ceed/integrators/convection \
|
||||
@MFEM_SOURCE_DIR@/fem/ceed/integrators/diffusion \
|
||||
@MFEM_SOURCE_DIR@/fem/ceed/integrators/mass \
|
||||
@MFEM_SOURCE_DIR@/fem/ceed/integrators/nlconvection \
|
||||
@MFEM_SOURCE_DIR@/fem/ceed/interface \
|
||||
@MFEM_SOURCE_DIR@/fem/ceed/solvers \
|
||||
@MFEM_SOURCE_DIR@/fem/moonolith \
|
||||
@MFEM_SOURCE_DIR@/fem/fe \
|
||||
@MFEM_SOURCE_DIR@/fem/lor \
|
||||
@MFEM_SOURCE_DIR@/fem/moonolith \
|
||||
@MFEM_SOURCE_DIR@/fem/qinterp \
|
||||
@MFEM_SOURCE_DIR@/fem/tmop \
|
||||
@MFEM_SOURCE_DIR@/examples \
|
||||
@MFEM_SOURCE_DIR@/examples/amgx \
|
||||
@MFEM_SOURCE_DIR@/examples/caliper \
|
||||
@MFEM_SOURCE_DIR@/examples/amgx \
|
||||
@MFEM_SOURCE_DIR@/examples/ginkgo \
|
||||
@MFEM_SOURCE_DIR@/examples/hiop \
|
||||
@MFEM_SOURCE_DIR@/examples/moonolith \
|
||||
@MFEM_SOURCE_DIR@/examples/hiop \
|
||||
@MFEM_SOURCE_DIR@/examples/petsc \
|
||||
@MFEM_SOURCE_DIR@/examples/pumi \
|
||||
@MFEM_SOURCE_DIR@/examples/sundials \
|
||||
@MFEM_SOURCE_DIR@/examples/superlu \
|
||||
@MFEM_SOURCE_DIR@/miniapps/adjoint \
|
||||
@MFEM_SOURCE_DIR@/miniapps/autodiff \
|
||||
@MFEM_SOURCE_DIR@/miniapps/common \
|
||||
@MFEM_SOURCE_DIR@/miniapps/electromagnetics \
|
||||
@MFEM_SOURCE_DIR@/miniapps/gslib \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hdiv-linear-solver \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke/kernels \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke/materials \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke/operators \
|
||||
@MFEM_SOURCE_DIR@/miniapps/hooke/preconditioners \
|
||||
@MFEM_SOURCE_DIR@/miniapps/meshing \
|
||||
@MFEM_SOURCE_DIR@/miniapps/mtop \
|
||||
@MFEM_SOURCE_DIR@/miniapps/multidomain \
|
||||
@MFEM_SOURCE_DIR@/miniapps/autodiff \
|
||||
@MFEM_SOURCE_DIR@/miniapps/navier \
|
||||
@MFEM_SOURCE_DIR@/miniapps/nurbs \
|
||||
@MFEM_SOURCE_DIR@/miniapps/parelag \
|
||||
@MFEM_SOURCE_DIR@/miniapps/performance \
|
||||
@MFEM_SOURCE_DIR@/miniapps/shifted \
|
||||
@MFEM_SOURCE_DIR@/miniapps/solvers \
|
||||
@MFEM_SOURCE_DIR@/miniapps/tools \
|
||||
@MFEM_SOURCE_DIR@/miniapps/toys \
|
||||
@MFEM_SOURCE_DIR@/miniapps/spde \
|
||||
@MFEM_SOURCE_DIR@/miniapps/dpg \
|
||||
@MFEM_SOURCE_DIR@/miniapps/dpg/util
|
||||
@MFEM_SOURCE_DIR@/miniapps/parelag
|
||||
|
||||
# This tag can be used to specify the character encoding of the source files
|
||||
# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
|
||||
|
||||
@@ -39,7 +39,7 @@ namespace mfem {
|
||||
* - Device
|
||||
* - Memory
|
||||
* - MemoryManager
|
||||
* - mfem::forall functions in forall.hpp
|
||||
* - MFEM_FORALL macro in forall.hpp
|
||||
*
|
||||
* <H3>Example codes</H3>
|
||||
* - <a class="el" href="ex0_8cpp_source.html">Example 0</a>: simplest example, nodal H1 FEM for the Laplace problem
|
||||
@@ -105,8 +105,6 @@ namespace mfem {
|
||||
* - <a class="el" href="ex32p_8cpp_source.html">Example 32p</a>: parallel anisotropic Maxwell eigensolver
|
||||
* - <a class="el" href="ex33_8cpp_source.html">Example 33</a>: nodal H1 FEM for the fractional Laplacian problem
|
||||
* - <a class="el" href="ex33p_8cpp_source.html">Example 33p</a>: parallel nodal H1 FEM for the fractional Laplacian problem
|
||||
* - <a class="el" href="ex36_8cpp_source.html">Example 36</a>: Proximal Galerkin FEM for the obstacle problem
|
||||
* - <a class="el" href="ex36p_8cpp_source.html">Example 36p</a>: parallel Proximal Galerkin FEM for the obstacle problem
|
||||
*
|
||||
* <H4>AmgX Examples</H4>
|
||||
* - Variants of Examples
|
||||
@@ -188,7 +186,6 @@ namespace mfem {
|
||||
* - <a class="el" href="extruder_8cpp_source.html">Extruder</a>: extrude a low-dimensional mesh into a higher dimension
|
||||
* - <a class="el" href="mesh-explorer_8cpp_source.html">Mesh Explorer</a>: visualize and manipulate meshes
|
||||
* - <a class="el" href="mesh-optimizer_8cpp_source.html">Mesh Optimizer</a>: optimize high-order meshes, <a class="el" href="mesh-optimizer_8cpp_source.html">serial</a> and <a class="el" href="pmesh-optimizer_8cpp_source.html">parallel</a> versions
|
||||
* - <a class="el" href="mesh-quality_8cpp_source.html">Mesh Quality</a>: visualize and check mesh quality
|
||||
* - <a class="el" href="trimmer_8cpp_source.html">Trimmer</a>: trim elements from existing meshes
|
||||
* - <a class="el" href="display-basis_8cpp_source.html">Display Basis</a>: visualize finite element basis functions
|
||||
* - <a class="el" href="get-values_8cpp_source.html">Get Values</a>: extract field values via DataCollection classes
|
||||
@@ -201,15 +198,12 @@ namespace mfem {
|
||||
* - <a class="el" href="distance_8cpp_source.html">Distance</a>: finite element distance function solver
|
||||
* - <a class="el" href="diffusion_8cpp_source.html">Shifted Diffusion</a>: shifted boundary diffusion solver
|
||||
* - <a class="el" href="extrapolate_8cpp_source.html">Extrapolation</a>: PDE-based extrapolation of finite element functions
|
||||
* - <a class="el" href="block-solvers_8cpp_source.html">Block Solvers</a>: comparison of saddle point system solvers
|
||||
* - <a class="el" href="distance_8cpp_source.html">Block Solvers</a>: comparison of saddle point system solvers
|
||||
* - <a class="el" href="parheat_8cpp_source.html">Optimization gradients</a>: Gradients of PDE-constrained function
|
||||
* - <a class="el" href="par__example_8cpp_source.html">Parallel AD</a>: Parallel p-Laplacian example
|
||||
* - <a class="el" href="seq__example_8cpp_source.html">Serial AD</a>: Serial p-Laplacian example
|
||||
* - <a class="el" href="miniapps_2performance_2ex1_8cpp_source.html">HPC Example 1</a>: high-performance nodal H1 FEM for the Laplace problem
|
||||
* - <a class="el" href="miniapps_2performance_2ex1p_8cpp_source.html">HPC Example 1p</a>: high-performance parallel nodal H1 FEM for the Laplace problem
|
||||
* - <a class="el" href="generate__random__field_8cpp_source.html">SPDE Solvers</a>: SPDE solver random field generation
|
||||
* - <a class="el" href="pdiffusion_8cpp_source.html">DPG Diffusion example</a>: DPG formulation for the diffusion problem
|
||||
* - <a class="el" href="pmaxwell_8cpp_source.html">DPG Maxwell example</a>: DPG formulation for the indefinite Maxwell problem
|
||||
*
|
||||
* See also the <a class="el" href="https://mfem.org/examples/">examples documentation</a> online.
|
||||
*/
|
||||
|
||||
+1
-1
@@ -1,4 +1,4 @@
|
||||
# Copyright (c) 2010-2023, Lawrence Livermore National Security, LLC. Produced
|
||||
# Copyright (c) 2010-2022, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
|
||||
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