Compare commits

...
Author SHA1 Message Date
Jan Nikl 4667cf9d39 Silenced tee. 2026-03-16 13:30:20 -07:00
Jan Nikl 1e6c8ecf56 Removed compilation checks. 2026-03-16 12:54:15 -07:00
Jan Nikl 95c844f519 Replaced tee -p by trap. 2026-03-16 12:30:43 -07:00
Jan Nikl b5b0f2382f Removed unnecessary move of the server. 2026-03-16 12:03:04 -07:00
Jan Nikl bbdc39d605 Added error when run on a non-POSIX platform. 2026-03-16 12:01:22 -07:00
Jan Nikl 7fed49c38b Added visualization server to ex1p. 2026-03-16 10:59:15 -07:00
Tzanio Kolev fa89c5e98c Merge pull request #4856 from mfem/phys-range-dim
Range and curl dimension in physical space
2026-03-13 07:44:40 -07:00
Tzanio Kolev 0980bda63b Merge pull request #5215 from balay/barry/update-for-petsc-v3.25-PetscCtx
Update to change in PETSc API (in v3.25) for PetscCtx and PetscCtxRt
2026-03-13 07:44:06 -07:00
Will Pazner 82abd48bba Merge pull request #5080 from mfem/cmake-config
CMake config.mk for CUDA and HIP
2026-03-11 12:18:25 -04:00
Tzanio Kolev d4374a9d5f Merge branch 'master' into cmake-config 2026-03-10 11:08:23 -07:00
Tzanio Kolev dcd3a25730 Merge branch 'master' into barry/update-for-petsc-v3.25-PetscCtx 2026-03-10 11:01:46 -07:00
Andrew Ho 0f99528c62 Merge branch 'master' into phys-range-dim 2026-03-05 12:45:42 -08:00
Veselin Dobrev ddfd74e899 Merge pull request #5255 from mfem/catch-tests
fix clang compiler warning for __COUNTER__
2026-03-05 12:39:29 -08:00
Mark L. Stowell 0248720eeb Merge branch 'master' into phys-range-dim 2026-03-05 09:35:14 -08:00
Andrew Ho feded39641 Merge branch 'master' into catch-tests 2026-03-05 09:28:31 -08:00
Tzanio Kolev 09128b9a5d Merge pull request #5240 from mfem/bugfix/chapan39/use-mfem-abort-kernel-in-device
dfem integrate: use mfem abort kernel in device code
2026-03-04 09:55:23 -08:00
Tzanio Kolev 68383b462b Merge pull request #5231 from mfem/plasma-dir-dev
Plasma Miniapp Directory
2026-03-04 09:54:48 -08:00
Tzanio Kolev 24d5609585 Merge pull request #5212 from mfem/najlkin/fix-cmplx-assign
[BUG] Complex grid function copy assignment
2026-03-04 09:54:25 -08:00
Andrew Ho 670a3f9a45 comment on why TPL_LIBRARIES is reversed twice 2026-03-03 11:43:02 -08:00
Andrew Ho 7baae02d65 Merge remote-tracking branch 'base/cmake-config' into cmake-config 2026-03-02 16:31:18 -08:00
Andrew Ho 728a0f313b move cudart to MFEM_EXT_LIBS 2026-03-02 16:30:31 -08:00
Andrew Ho 1bb624e2a8 fix clang compiler warning for __COUNTER__ 2026-03-02 14:05:28 -08:00
Tzanio Kolev ee7ccd6464 Merge branch 'master' into plasma-dir-dev 2026-03-02 11:56:51 -08:00
Stowell, Mark L. a3ae5a6f01 Changing copyright date to pass CI checks 2026-03-02 09:22:29 -08:00
Andrew HoandNuno Nobre 9243d00549 Update config/cmake/modules/MfemCmakeUtilities.cmake
Co-authored-by: Nuno Nobre <nuno.nobre@stfc.ac.uk>
2026-02-28 14:53:22 -08:00
Andrew HoandNuno Nobre 4fe3db5a5f Update config/cmake/modules/MfemCmakeUtilities.cmake
Co-authored-by: Nuno Nobre <nuno.nobre@stfc.ac.uk>
2026-02-28 14:53:15 -08:00
Andrew Ho 55bb710cba fixed wrong dir being marked as system 2026-02-27 14:02:24 -08:00
Andrew HoandNuno Nobre 7ad6939454 Update config/cmake/modules/MfemCmakeUtilities.cmake
Co-authored-by: Nuno Nobre <nuno.nobre@stfc.ac.uk>
2026-02-27 07:06:16 -08:00
60cc94e5a1 Update to use PetscCtxRt from (3,25,0), and cleanup duplicate code
Co-authored-by: Nuno Nobre <nuno.nobre@stfc.ac.uk>
Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2026-02-26 11:57:27 -06:00
Satish Balay 9122ac1839 update KSPMonitorFn usage for < (3,24,0) 2026-02-26 11:57:22 -06:00
Satish Balay 864186117d update PetscCtxDestroyFn usage for < (3,23,0) 2026-02-26 11:56:15 -06:00
Ketan Mittal 35de169fd0 Merge branch 'master' into plasma-dir-dev 2026-02-26 09:42:51 -08:00
Andrew Ho 0a3184ab31 MFEM_EXPORT_GPU_CONFIG should export CPU config.mk when set to off 2026-02-24 11:56:38 -08:00
Mark L. Stowell a438e09caf Merge branch 'master' into plasma-dir-dev 2026-02-24 11:02:04 -08:00
Alex Tyler Chapman ea03a86df2 Merge branch 'master' into bugfix/chapan39/use-mfem-abort-kernel-in-device 2026-02-24 10:32:30 -08:00
chapman39 6ef7a9e6fb 80 chars/ line 2026-02-24 10:32:18 -08:00
Alex Tyler Chapman db7dd30d32 Merge branch 'master' into bugfix/chapan39/use-mfem-abort-kernel-in-device 2026-02-23 09:33:23 -08:00
chapman39 a1fe3a19b1 dfem integrate: use mfem abort kernel in device code 2026-02-19 17:45:11 -08:00
Satish Balay 213ccd7a4e rework PetscContainerSetCtxDestroy() usage for < (3,23,0) 2026-02-18 15:51:42 -06:00
Tzanio Kolev 2b14134496 Merge branch 'master' into najlkin/fix-cmplx-assign 2026-02-17 08:27:01 -08:00
Stowell, Mark L. 794a5fbfc2 Adding miniapps/plasma subdirectory to build system 2026-02-11 11:56:06 -08:00
Stowell, Mark L. 746a62f017 Adding plasma miniapp directory 2026-02-11 11:53:01 -08:00
Andrew Ho 26e9057f02 revert change, updated comment to why libdl gets special treatment 2026-01-30 07:27:04 -08:00
Jan Nikl 16dfa11f27 Minor docstring correction. 2026-01-28 15:45:20 -08:00
Jan Nikl c7774e3c1c Fixed complex grid function copy assignment. 2026-01-28 15:34:55 -08:00
Andrew Ho 194f3d8140 suggestions from Veselin 2026-01-21 11:45:20 -08:00
Mark L. Stowell 3f9b44a9cd Merge branch 'master' into phys-range-dim 2026-01-21 10:38:56 -08:00
John Camier caa973d6a0 Merge branch 'master' into cmake-config 2026-01-13 08:13:47 -08:00
Andrew Ho ad40704e20 Merge branch 'master' into cmake-config 2026-01-06 11:55:40 -08:00
Andrew Ho d3470c07c9 Merge branch 'master' into cmake-config 2025-12-16 12:05:27 -08:00
Andrew Ho 06a15cb7a9 missed one old unsetting of shared_link_flag 2025-12-01 17:02:05 -08:00
Andrew Ho d19ff6c676 Merge branch 'master' into cmake-config 2025-12-01 12:33:24 -08:00
Andrew Ho d85fbc6504 review suggestions 2025-11-25 14:35:38 -08:00
Andrew Ho 29346a87b6 Merge branch 'master' into cmake-config 2025-11-25 14:31:21 -05:00
Andrew Ho 3464f7a004 Merge branch 'master' into cmake-config 2025-10-28 11:08:38 -07:00
Andrew Ho 7de48e47ad Merge branch 'master' into cmake-config 2025-10-24 09:24:50 -07:00
Andrew Ho 70814c640b fixes for hip 2025-10-20 14:01:50 -07:00
Andrew Ho e9d3ae80f7 remove debug printout 2025-10-20 13:30:20 -07:00
Andrew Ho c8efc23c12 seems to be building external laghos now 2025-10-20 13:26:04 -07:00
Andrew Ho f26eb33252 Merge remote-tracking branch 'base/cmake-gpu' into cmake-config 2025-10-20 10:25:58 -07:00
Andrew Ho 05e622f837 improving config.mk file generated by cmake to work with hip/cuda
Still need to export compiler flags
2025-10-20 08:33:17 -07:00
Mark L. Stowell e9f84b033f Merge branch 'master' into phys-range-dim 2025-10-15 06:49:33 -07:00
Mark L. Stowell 83fd119b95 Merge branch 'master' into phys-range-dim 2025-07-01 10:16:58 -07:00
Mark L. Stowell 4aecb86d71 Merge branch 'master' into phys-range-dim 2025-05-19 17:51:08 -07:00
Stowell, Mark L. 776a4c1815 Updating unit tests 2025-05-11 14:40:05 -07:00
Stowell, Mark L. c870d7dc1c Using new MapType entries and implementing new GetPhys*Dim methods 2025-05-11 14:39:49 -07:00
Stowell, Mark L. 8519889074 Adding new MapType entries for R2D and R1D classes 2025-05-11 14:38:50 -07:00
19 changed files with 578 additions and 123 deletions
+5 -1
View File
@@ -652,6 +652,8 @@ foreach(TPL IN LISTS MFEM_TPLS)
endif()
endforeach(TPL)
# reverse to remove the first instance of entries in TPL_LIBRARIES
# so later duplicates are kept (for dependency ordering)
list(REVERSE TPL_LIBRARIES)
list(REMOVE_DUPLICATES TPL_LIBRARIES)
list(REVERSE TPL_LIBRARIES)
@@ -1015,5 +1017,7 @@ install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/data
# Create 'config.mk' from 'config.mk.in' for the build and install locations and
# define install rules for 'config.mk' and 'test.mk'
#-------------------------------------------------------------------------------
if (MFEM_USE_CUDA OR MFEM_USE_HIP)
option(MFEM_EXPORT_GPU_CONFIG "Export config.mk for GPU-enabled downstream packages" ON)
endif()
mfem_export_mk_files()
+89 -17
View File
@@ -701,7 +701,6 @@ endfunction(mfem_find_library)
# Extract compile and link options needed by the given target.
#
function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
if (NOT TARGET ${Target})
return()
endif()
@@ -799,7 +798,12 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
# message(STATUS "Lib = ${Lib}")
# Filter-out generator expressions
if (NOT ("${Lib}" MATCHES "^\\$"))
list(APPEND LinkOpts "${Lib}")
if(NOT ("${Lib}" STREQUAL "dl"))
list(APPEND LinkOpts "${Lib}")
else()
# for some reason libdl doesn't include the "-l"
list(APPEND LinkOpts "-ldl")
endif()
endif()
else()
mfem_get_target_options(${Lib} COpts LOpts)
@@ -888,9 +892,18 @@ function(mfem_export_mk_files)
set(${var} NO)
endif()
endforeach()
# TODO: Add support for MFEM_USE_CUDA=YES
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
set(MFEM_HOST_CXX ${MFEM_CXX})
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
set(MFEM_CXX ${CMAKE_CUDA_COMPILER})
if(MFEM_CUDA_COMPILER_IS_NVCC)
set(MFEM_HOST_CXX ${CMAKE_CUDA_HOST_COMPILER})
else()
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
endif()
else()
# mfem doesn't use enable_language(HIP)
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
endif()
set(MFEM_CPPFLAGS "")
get_target_property(cxx_std mfem CXX_STANDARD)
# For now, we ignore the setting of the CXX_EXTENSIONS property. If this
@@ -900,6 +913,50 @@ function(mfem_export_mk_files)
string(STRIP
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
MFEM_CXXFLAGS)
if(MFEM_EXPORT_GPU_CONFIG)
if (MFEM_USE_CUDA)
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} ${CMAKE_CUDA_FLAGS}")
if (MFEM_CUDA_COMPILER_IS_NVCC)
set(MFEM_CXXFLAGS "-x=cu ${MFEM_CXXFLAGS} -ccbin ${CMAKE_CXX_COMPILER} --forward-unknown-to-host-compiler")
# The following intentionally hides CUDA deprecation warnings
foreach(ENTRY IN LISTS CUDAToolkit_INCLUDE_DIRS)
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -isystem ${ENTRY}")
endforeach()
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
# architecture flags not part of CMAKE_CUDA_FLAGS
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -arch=${CMAKE_CUDA_ARCHITECTURES}")
else()
foreach (ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
set(MFEM_CXXFLAGS
"${MFEM_CXXFLAGS} -gencode arch=compute_${ENTRY},code=sm_${ENTRY}")
endforeach()
endif()
endif()
else()
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xcuda --cuda-path=${CUDAToolkit_LIBRARY_ROOT}")
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
# architecture flags not part of CMAKE_CUDA_FLAGS
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
# TODO: not supported
else()
foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
set(MFEM_CXXFLAGS "-cuda-gpu-arch=sm_${ENTRY} ${MFEM_CXXFLAGS}")
endforeach()
endif()
endif()
endif()
elseif (MFEM_USE_HIP)
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xhip")
foreach(ENTRY IN LISTS CMAKE_HIP_ARCHITECTURES)
set(MFEM_CXXFLAGS "--offload-arch=${ENTRY} ${MFEM_CXXFLAGS}")
endforeach()
endif()
endif()
set(MFEM_TPLFLAGS "")
foreach(dir ${TPL_INCLUDE_DIRS})
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
@@ -930,6 +987,9 @@ function(mfem_export_mk_files)
set(MFEM_SHARED NO)
set(MFEM_STATIC YES)
endif()
if (MFEM_USE_CUDA)
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} -lcudart")
endif()
set(MFEM_BUILD_TAG "${CMAKE_SYSTEM}")
set(MFEM_PREFIX "${CMAKE_INSTALL_PREFIX}")
# For the next 4 variables, these are the values for the build-tree version of
@@ -938,8 +998,15 @@ function(mfem_export_mk_files)
set(MFEM_LIB_DIR "${PROJECT_BINARY_DIR}")
set(MFEM_TEST_MK "${PROJECT_SOURCE_DIR}/config/test.mk")
set(MFEM_CONFIG_EXTRA "MFEM_BUILD_DIR ?= ${PROJECT_BINARY_DIR}")
# TODO: CUDA/HIP support:
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
if (MFEM_CUDA_COMPILER_IS_NVCC)
set(MFEM_XLINKER "-Xlinker=")
else()
set(MFEM_XLINKER "${CMAKE_CUDA_LINKER_WRAPPER_FLAG}")
endif()
else()
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
endif()
set(MFEM_MPIEXEC ${MPIEXEC})
if (NOT MFEM_MPIEXEC)
set(MFEM_MPIEXEC "mpirun")
@@ -987,16 +1054,21 @@ function(mfem_export_mk_files)
# handle interfaces (e.g., SCOREC::apf)
if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*" OR "${lib}" MATCHES "ParMoonolith::.*")
elseif (TARGET "${lib}")
mfem_get_target_options(${lib} CompileOpts LinkOpts)
mfem_get_target_options(${lib} CompileOpts2 LinkOpts2)
# remove generator expressions
string(GENEX_STRIP "${CompileOpts2}" CompileOpts)
string(GENEX_STRIP "${LinkOpts2}" LinkOpts)
# Removing duplicates may lead to issues:
# list(REMOVE_DUPLICATES CompileOpts)
# list(REMOVE_DUPLICATES LinkOpts)
string(REPLACE ";" " " COpts "${CompileOpts}")
string(REPLACE ";" " " LOpts "${LinkOpts}")
# message(STATUS "${lib}[COpts]: '${COpts}'")
# message(STATUS "${lib}[LOpts]: '${LOpts}'")
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpts}")
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpts}")
# message(WARNING "${lib}[LinkOpts]: ${LinkOpts}")
# message(WARNING "${lib}[CompileOpts]: ${CompileOpts}")
foreach(LOpt IN LISTS LinkOpts)
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpt}")
endforeach()
foreach(COpt IN LISTS CompileOpts)
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpt}")
endforeach()
# message(FATAL_ERROR "***** interface lib found ... exiting *****")
# handle static and shared libs
elseif ("${suffix}" STREQUAL "${CMAKE_SHARED_LIBRARY_SUFFIX}")
@@ -1004,7 +1076,7 @@ function(mfem_export_mk_files)
get_filename_component(fullLibName ${lib} NAME_WE)
string(REGEX REPLACE "^lib" "" libname ${fullLibName})
set(MFEM_EXT_LIBS
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
else()
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${lib}")
endif()
@@ -1013,7 +1085,7 @@ function(mfem_export_mk_files)
# Create the build-tree version of 'config.mk'
configure_file(
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
"${PROJECT_BINARY_DIR}/config/config.mk")
"${PROJECT_BINARY_DIR}/config/config.mk" @ONLY)
# Copy 'test.mk' from the source-tree to the build-tree
configure_file(
"${PROJECT_SOURCE_DIR}/config/test.mk"
@@ -1031,7 +1103,7 @@ function(mfem_export_mk_files)
# Create the install-tree version of 'config.mk'
configure_file(
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
"${PROJECT_BINARY_DIR}/config/config-install.mk")
"${PROJECT_BINARY_DIR}/config/config-install.mk" @ONLY)
# Install rules for 'config.mk' and 'test.mk'
install(FILES ${PROJECT_SOURCE_DIR}/config/test.mk
+94
View File
@@ -66,6 +66,26 @@
using namespace std;
using namespace mfem;
class VisServer
{
const char *path{};
int port{-1};
struct Deleter { void operator()(FILE *); };
std::unique_ptr<FILE, Deleter> fglvis;
void Open();
public:
VisServer(const char *path_, int port_ = 19916)
: path(path_), port(port_) { Open(); }
explicit VisServer() = default;
inline const char *GetPath() const { return path; }
inline int GetPort() const { return port; }
inline bool IsOpen() const { return (fglvis != nullptr); }
};
int main(int argc, char *argv[])
{
// 1. Initialize MPI and HYPRE.
@@ -82,6 +102,7 @@ int main(int argc, char *argv[])
bool fa = false;
const char *device_config = "cpu";
bool visualization = true;
const char *visserver = "";
bool algebraic_ceed = false;
OptionsParser args(argc, argv);
@@ -106,6 +127,8 @@ int main(int argc, char *argv[])
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&visserver, "-vs", "--visualization-server",
"Path to GLVis binary to start own server.");
args.Parse();
if (!args.Good())
{
@@ -301,6 +324,14 @@ int main(int argc, char *argv[])
{
char vishost[] = "localhost";
int visport = 19916;
VisServer server;
if (strlen(visserver) > 0)
{
server = VisServer(visserver, visport);
visport = server.GetPort();
}
socketstream sol_sock(vishost, visport);
sol_sock << "parallel " << num_procs << " " << myid << "\n";
sol_sock.precision(8);
@@ -315,3 +346,66 @@ int main(int argc, char *argv[])
return 0;
}
void VisServer::Open()
{
if (!path || strlen(path) <= 0) { return; }
#ifdef MFEM_USE_MPI
if (Mpi::Root())
#endif // MFEM_USE_MPI
{
// Open a log file
FILE *ftmp = popen("mktemp --tmpdir glvis-log.XXXXXX", "r");
constexpr size_t ssize = 256;
char stmp[ssize];
fgets(stmp, ssize, ftmp);
pclose(ftmp);
int len = strlen(stmp);
if (len > 0 && stmp[len-1] == '\n') { stmp[--len] = '\0'; }
std::cout << "Starting GLVis log in: " << stmp << std::endl;
// Start the server
std::stringstream ss;
ss << "trap '' SIGPIPE && " << path <<
" -no-pr -no-ex 2>&1 | tee \"" << stmp <<
"\" 2> /dev/null | grep -m 1 ^GLVIS_SERVER_PORT";
fglvis.reset(popen(ss.str().c_str(), "r"));
// Capture the port number
char line[ssize];
bool captured = false;
while (fgets(line, ssize, fglvis.get()))
{
if (strncmp(line, "GLVIS_SERVER_PORT=", 18) == 0)
{
sscanf(line, "GLVIS_SERVER_PORT=%d", &port);
captured = true;
break;
}
}
if (captured)
{
std::cout << "Started GLVis server at port: " << port << std::endl;
}
else
{
std::cerr << "GLVis server did not start normally." << std::endl;
}
}
#ifdef MFEM_USE_MPI
MPI_Bcast(&port, 1, MPI_INT, 0, MPI_COMM_WORLD);
#endif // MFEM_USE_MPI
}
void VisServer::Deleter::operator()(FILE *f)
{
if (f != nullptr)
{
int ierr = pclose(f);
if (ierr != 0)
{
std::cerr << "GLVis server pclose() returns: " << ierr << std::endl;
}
}
}
+19
View File
@@ -82,6 +82,25 @@ public:
/// underlying #fes
int VectorDim() const;
/// Copy assignment. Only the data of the base class Vector is copied.
/** It is assumed that this object and @a rhs use FiniteElementSpace%s that
have the same size.
@note Defining this method overwrites the implicitly defined copy
assignment operator. */
ComplexGridFunction &operator=(const ComplexGridFunction &rhs)
{ return operator=((const Vector &)rhs); }
/// Copy the data from @a v.
/** The size of @a v must be equal to double of the size of the associated
FiniteElementSpace #fes. */
ComplexGridFunction &operator=(const Vector &v)
{
MFEM_ASSERT(fes && v.Size() == 2*fes->GetVSize(), "");
Vector::operator=(v);
return *this;
}
/// Assign constant values to the ComplexGridFunction data.
ComplexGridFunction &operator=(const std::complex<real_t> & value)
{ *gfr = value.real(); *gfi = value.imag(); return *this; }
+11 -8
View File
@@ -90,8 +90,8 @@ void map_quadrature_data_to_fields_impl(
}
else
{
MFEM_ABORT("quadrature data mapping to field is not implemented for"
" this field descriptor");
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
" for this field descriptor");
}
}
@@ -169,8 +169,9 @@ void map_quadrature_data_to_fields_tensor_impl_1d(
}
else
{
MFEM_ABORT("quadrature data mapping to field is not implemented for"
" this field descriptor with sum factorization on tensor product elements");
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
"for this field descriptor with sum factorization on"
" tensor product elements");
}
}
@@ -306,8 +307,9 @@ void map_quadrature_data_to_fields_tensor_impl_2d(
}
else
{
MFEM_ABORT("quadrature data mapping to field is not implemented for"
" this field descriptor with sum factorization on tensor product elements");
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
" for this field descriptor with sum factorization on"
" tensor product elements");
}
}
@@ -492,8 +494,9 @@ void map_quadrature_data_to_fields_tensor_impl_3d(
}
else
{
MFEM_ABORT("quadrature data mapping to field is not implemented for"
" this field descriptor with sum factorization on tensor product elements");
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
" for this field descriptor with sum factorization on"
" tensor product elements");
}
}
+82 -5
View File
@@ -1044,9 +1044,50 @@ void VectorFiniteElement::SetDerivMembers()
switch (map_type)
{
case H_DIV:
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
switch (dim)
{
case 3: // div: 3D H_DIV -> 3D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
case 2: // div: 2D H_DIV -> 2D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_DIV_R2D:
switch (dim)
{
case 2: // div: 2D H_DIV_R2D -> 2D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
case 1: // div: 1D H_DIV_R2D -> 1D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_DIV_R1D:
switch (dim)
{
case 1: // div: 1D H_DIV_R1D -> 1D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_CURL:
switch (dim)
@@ -1064,13 +1105,49 @@ void VectorFiniteElement::SetDerivMembers()
break;
case 1:
deriv_type = NONE;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
deriv_range_type = UNKNOWN_RANGE_TYPE;
deriv_map_type = UNKNOWN_MAP_TYPE;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_CURL_R2D:
switch (dim)
{
case 2:
// curl: 2D H_CURL_R2D -> H_DIV_R2D
deriv_type = CURL;
deriv_range_type = VECTOR;
deriv_map_type = H_DIV_R2D;
break;
case 1:
// curl: 1D H_CURL_R2D -> H_DIV_R2D
deriv_type = CURL;
deriv_range_type = VECTOR;
deriv_map_type = H_DIV_R2D;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_CURL_R1D:
switch (dim)
{
case 1:
// curl: 1D H_CURL_R1D -> H_DIV_R1D
deriv_type = CURL;
deriv_range_type = VECTOR;
deriv_map_type = H_DIV_R1D;
break;
case 0:
deriv_type = NONE;
deriv_range_type = UNKNOWN_RANGE_TYPE;
deriv_map_type = UNKNOWN_MAP_TYPE;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
default:
MFEM_ABORT("Invalid MapType = " << map_type);
}
+31 -3
View File
@@ -295,10 +295,20 @@ public:
$ u(x) = (1/w) \hat u(\hat x) $ */
H_DIV, /**< For vector fields; preserves surface integrals of the
normal component $ u(x) = (J/w) \hat u(\hat x) $ */
H_CURL /**< For vector fields; preserves line integrals of the
H_CURL, /**< For vector fields; preserves line integrals of the
tangential component
$ u(x) = J^{-t} \hat u(\hat x) $ (square J),
$ u(x) = J(J^t J)^{-1} \hat u(\hat x) $ (general J) */
H_DIV_R2D, /**< For 3-component vector fields in 2D; equivalent to a
direct sum of an H_DIV basis and an INTEGRAL basis */
H_CURL_R2D,/**< For 3-component vector fields in 2D; equivalent to a
direct sum of an H_CURL basis and a VALUE basis */
H_DIV_R1D, /**< For 3-component vector fields in 1D; equivalent to a
direct sum of a VALUE basis and a pair of INTEGRAL
bases */
H_CURL_R1D /**< For 3-component vector fields in 1D; equivalent to a
direct sum of an INTEGRAL basis and a pair of VALUE
bases */
};
/** @brief Enumeration for DerivType: defines which derivative method
@@ -330,12 +340,28 @@ public:
int GetDim() const { return dim; }
/** @brief Returns the vector dimension for vector-valued finite elements,
which is also the dimension of the interpolation operation. */
which is also the dimension of the interpolation operation and the
width of the DenseMatrix argument in
CalcVShape(const IntegrationPoint &ip, DenseMatrix &shape). */
int GetRangeDim() const { return vdim; }
/// Returns the dimension of the curl for vector-valued finite elements.
/** @brief Returns the vector dimension, in physical space, for
vector-valued finite elements, which is also the width of the
DenseMatrix argument in
CalcPhysVShape(ElementTransformation &Trans, DenseMatrix &shape). */
int GetPhysRangeDim(int /* space_dim */) const { return vdim; }
/** Returns the dimension of the curl for vector-valued finite elements,
which is also the width of the DenseMatrix argument in
CalcCurlShape(const IntegrationPoint &ip, DenseMatrix &curl_shape). */
int GetCurlDim() const { return cdim; }
/** Returns the dimension, in physical space, of the curl for vector-valued
finite elements, which is also the width of the DenseMatrix argument in
CalcPhysCurlShape(ElementTransformation &Trans, DenseMatrix &curl_shape).
*/
int GetPhysCurlDim(int /* space_dim */) const { return cdim; }
/// Returns the Geometry::Type of the reference element.
Geometry::Type GetGeomType() const { return geom_type; }
@@ -990,6 +1016,8 @@ protected:
public:
VectorFiniteElement(int D, Geometry::Type G, int Do, int O, int M,
int F = FunctionSpace::Pk);
int GetPhysRangeDim(int space_dim) const { return space_dim; }
};
/// @brief Class for computing 1D special polynomials and their associated basis
+4 -4
View File
@@ -2531,7 +2531,7 @@ void ND_FuentesPyramidElement::calcCurlBasis(const int p,
ND_R1D_PointElement::ND_R1D_PointElement(int p)
: VectorFiniteElement(1, Geometry::POINT, 2, p,
H_CURL, FunctionSpace::Pk)
H_CURL_R1D, FunctionSpace::Pk)
{
// VectorFiniteElement::SetDerivMembers doesn't support 0D H_CURL elements
// so we mimic a 1D element and then correct the dimension here.
@@ -2562,7 +2562,7 @@ ND_R1D_SegmentElement::ND_R1D_SegmentElement(const int p,
const int cb_type,
const int ob_type)
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 2, p,
H_CURL, FunctionSpace::Pk),
H_CURL_R1D, FunctionSpace::Pk),
dof2tk(dof),
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
@@ -2839,7 +2839,7 @@ ND_R2D_SegmentElement::ND_R2D_SegmentElement(const int p,
const int cb_type,
const int ob_type)
: VectorFiniteElement(1, Geometry::SEGMENT, 2 * p + 1, p,
H_CURL, FunctionSpace::Pk),
H_CURL_R2D, FunctionSpace::Pk),
dof2tk(dof),
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
@@ -3023,7 +3023,7 @@ void ND_R2D_SegmentElement::Project(VectorCoefficient &vc,
ND_R2D_FiniteElement::ND_R2D_FiniteElement(int p, Geometry::Type G, int Do,
const real_t *tk_fe)
: VectorFiniteElement(2, G, Do, p,
H_CURL, FunctionSpace::Pk),
H_CURL_R2D, FunctionSpace::Pk),
tk(tk_fe),
dof_map(dof),
dof2tk(dof)
+6
View File
@@ -663,6 +663,9 @@ public:
const int cb_type = BasisType::GaussLobatto,
const int ob_type = BasisType::GaussLegendre);
int GetPhysRangeDim(int space_dim) const { return 2; }
int GetPhysCurlDim(int space_dim) const { return 1; }
void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const override;
@@ -705,6 +708,9 @@ private:
DenseMatrix &I) const;
public:
int GetPhysRangeDim(int space_dim) const { return 3; }
int GetPhysCurlDim(int space_dim) const { return 3; }
using FiniteElement::CalcVShape;
using FiniteElement::CalcPhysCurlShape;
+3 -3
View File
@@ -2006,7 +2006,7 @@ RT_R1D_SegmentElement::RT_R1D_SegmentElement(const int p,
const int cb_type,
const int ob_type)
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 4, p + 1,
H_DIV, FunctionSpace::Pk),
H_DIV_R1D, FunctionSpace::Pk),
dof2nk(dof),
cbasis1d(poly1d.GetBasis(p + 1, VerifyClosed(cb_type))),
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
@@ -2281,7 +2281,7 @@ const real_t RT_R2D_SegmentElement::nk[2] = { 0.,1.};
RT_R2D_SegmentElement::RT_R2D_SegmentElement(const int p,
const int ob_type)
: VectorFiniteElement(1, Geometry::SEGMENT, p + 1, p + 1,
H_DIV, FunctionSpace::Pk),
H_DIV_R2D, FunctionSpace::Pk),
dof2nk(dof),
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
{
@@ -2392,7 +2392,7 @@ void RT_R2D_SegmentElement::LocalInterpolation(const VectorFiniteElement &cfe,
RT_R2D_FiniteElement::RT_R2D_FiniteElement(int p, Geometry::Type G, int Do,
const real_t *nk_fe)
: VectorFiniteElement(2, G, Do, p + 1,
H_DIV, FunctionSpace::Pk),
H_DIV_R2D, FunctionSpace::Pk),
nk(nk_fe),
dof_map(dof),
dof2nk(dof)
+6
View File
@@ -510,6 +510,9 @@ public:
RT_R2D_SegmentElement(const int p,
const int ob_type = BasisType::GaussLegendre);
int GetPhysRangeDim(int space_dim) const { return 2; }
int GetPhysCurlDim(int space_dim) const { return 0; }
void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const override;
@@ -547,6 +550,9 @@ private:
DenseMatrix &I) const;
public:
int GetPhysRangeDim(int space_dim) const { return 3; }
int GetPhysCurlDim(int space_dim) const { return 0; }
using FiniteElement::CalcVShape;
void CalcVShape(ElementTransformation &Trans,
+44 -78
View File
@@ -38,6 +38,13 @@
#if PETSC_VERSION_LT(3,19,0)
#define PETSC_SUCCESS 0
#endif
#if PETSC_VERSION_LT(3,23,0)
#define PetscContainerSetCtxDestroy(A,B) PetscContainerSetUserDestroy(A,B)
typedef PetscErrorCode (PetscCtxDestroyFn)(void**);
#endif
#if PETSC_VERSION_LT(3,24,0)
typedef PetscErrorCode KSPMonitorFn(KSP,PetscInt,PetscReal,void*);
#endif
#include <fstream>
#include <iomanip>
@@ -77,13 +84,17 @@ static PetscErrorCode __mfem_mat_shell_apply_transpose(Mat,Vec,Vec);
static PetscErrorCode __mfem_mat_shell_destroy(Mat);
static PetscErrorCode __mfem_mat_shell_copy(Mat,Mat,MatStructure);
#if PETSC_VERSION_LT(3,23,0)
static PetscErrorCode __mfem_array_container_destroy(void*);
static PetscErrorCode __mfem_matarray_container_destroy(void *);
#else
static PetscErrorCode __mfem_array_container_destroy(void**);
static PetscErrorCode __mfem_matarray_container_destroy(void**);
typedef void *PetscCtxRt;
#elif PETSC_VERSION_LT(3,25,0)
typedef void **PetscCtxRt;
#endif
static PetscErrorCode __mfem_array_container_destroy(PetscCtxRt);
static PetscErrorCode __mfem_matarray_container_destroy(PetscCtxRt);
#if PETSC_VERSION_LT(3,23,0)
static PetscErrorCode __mfem_monitor_ctx_destroy(void**);
#else
static PetscErrorCode __mfem_monitor_ctx_destroy(PetscCtxRt);
#endif
// auxiliary functions
static PetscErrorCode Convert_Array_IS(MPI_Comm,bool,const mfem::Array<int>*,
@@ -1317,11 +1328,7 @@ BlockDiagonalConstructor(MPI_Comm comm,
ierr = PetscContainerCreate(comm,&c); CCHKERRQ(comm,ierr);
ierr = PetscContainerSetPointer(c,ptrs[i]); CCHKERRQ(comm,ierr);
#if PETSC_VERSION_LT(3,23,0)
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
#else
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
#endif
CCHKERRQ(comm,ierr);
ierr = PetscObjectCompose((PetscObject)A,names[i],(PetscObject)c);
CCHKERRQ(comm,ierr);
@@ -1648,11 +1655,7 @@ void PetscParMatrix::ConvertOperator(MPI_Comm comm, const Operator &op, Mat* A,
PetscContainer c;
ierr = PetscContainerCreate(comm,&c); CCHKERRQ(comm,ierr);
ierr = PetscContainerSetPointer(c,vmatsl2l); PCHKERRQ(c,ierr);
#if PETSC_VERSION_LT(3,23,0)
ierr = PetscContainerSetUserDestroy(c,__mfem_matarray_container_destroy);
#else
ierr = PetscContainerSetCtxDestroy(c,__mfem_matarray_container_destroy);
#endif
PCHKERRQ(c,ierr);
ierr = PetscObjectCompose((PetscObject)(*A),"_MatIS_PtAP_l2l",(PetscObject)c);
PCHKERRQ((*A),ierr);
@@ -1748,11 +1751,7 @@ void PetscParMatrix::ConvertOperator(MPI_Comm comm, const Operator &op, Mat* A,
ierr = PetscContainerCreate(PETSC_COMM_SELF,&c); PCHKERRQ(B,ierr);
ierr = PetscContainerSetPointer(c,ptrs[i]); PCHKERRQ(B,ierr);
#if PETSC_VERSION_LT(3,23,0)
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
#else
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
#endif
PCHKERRQ(B,ierr);
ierr = PetscObjectCompose((PetscObject)(B),names[i],(PetscObject)c);
PCHKERRQ(B,ierr);
@@ -2198,11 +2197,7 @@ PetscParMatrix * RAP(PetscParMatrix *Rt, PetscParMatrix *A, PetscParMatrix *P)
ierr = PetscContainerCreate(PetscObjectComm((PetscObject)B),&c);
PCHKERRQ(B,ierr);
ierr = PetscContainerSetPointer(c,vmatsl2l); PCHKERRQ(c,ierr);
#if PETSC_VERSION_LT(3,23,0)
ierr = PetscContainerSetUserDestroy(c,__mfem_matarray_container_destroy);
#else
ierr = PetscContainerSetCtxDestroy(c,__mfem_matarray_container_destroy);
#endif
PCHKERRQ(c,ierr);
ierr = PetscObjectCompose((PetscObject)B,"_MatIS_PtAP_l2l",(PetscObject)c);
PCHKERRQ(B,ierr);
@@ -2485,7 +2480,6 @@ void PetscSolver::SetMaxIter(int max_iter)
void PetscSolver::SetPrintLevel(int plev)
{
typedef PetscErrorCode (*myPetscFunc)(void**);
PetscViewerAndFormat *vf = NULL;
PetscViewer viewer = PETSC_VIEWER_STDOUT_(PetscObjectComm(obj));
@@ -2498,7 +2492,6 @@ void PetscSolver::SetPrintLevel(int plev)
{
// there are many other options, see the function KSPSetFromOptions() in
// src/ksp/ksp/interface/itcl.c
typedef PetscErrorCode (*myMonitor)(KSP,PetscInt,PetscReal,void*);
KSP ksp = (KSP)obj;
if (plev >= 0)
{
@@ -2507,29 +2500,29 @@ void PetscSolver::SetPrintLevel(int plev)
if (plev == 1)
{
#if PETSC_VERSION_LT(3,15,0)
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorDefault,vf,
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorDefault,vf,
#else
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorResidual,vf,
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorResidual,vf,
#endif
(myPetscFunc)PetscViewerAndFormatDestroy);
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
PCHKERRQ(ksp,ierr);
}
else if (plev > 1)
{
ierr = KSPSetComputeSingularValues(ksp,PETSC_TRUE); PCHKERRQ(ksp,ierr);
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorSingularValue,vf,
(myPetscFunc)PetscViewerAndFormatDestroy);
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorSingularValue,vf,
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
PCHKERRQ(ksp,ierr);
if (plev > 2)
{
ierr = PetscViewerAndFormatCreate(viewer,PETSC_VIEWER_DEFAULT,&vf);
PCHKERRQ(viewer,ierr);
#if PETSC_VERSION_LT(3,15,0)
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorTrueResidualNorm,vf,
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorTrueResidualNorm,vf,
#else
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorTrueResidual,vf,
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorTrueResidual,vf,
#endif
(myPetscFunc)PetscViewerAndFormatDestroy);
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
PCHKERRQ(ksp,ierr);
}
}
@@ -2545,7 +2538,7 @@ void PetscSolver::SetPrintLevel(int plev)
if (plev > 0)
{
ierr = SNESMonitorSet(snes,(myMonitor)SNESMonitorDefault,vf,
(myPetscFunc)PetscViewerAndFormatDestroy);
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
PCHKERRQ(snes,ierr);
}
}
@@ -5329,21 +5322,27 @@ static PetscErrorCode __mfem_pc_shell_destroy(PC pc)
PetscFunctionReturn(PETSC_SUCCESS);
}
static PetscErrorCode __mfem_array_container_destroy(PetscCtxRt ptr)
{
PetscErrorCode ierr;
PetscFunctionBeginUser;
#if PETSC_VERSION_LT(3,23,0)
static PetscErrorCode __mfem_array_container_destroy(void *ptr)
{
PetscErrorCode ierr;
PetscFunctionBeginUser;
ierr = PetscFree(ptr); CHKERRQ(ierr);
#else
ierr = PetscFree(*(void**)ptr); CHKERRQ(ierr);
#endif
PetscFunctionReturn(PETSC_SUCCESS);
}
static PetscErrorCode __mfem_matarray_container_destroy(void *ptr)
static PetscErrorCode __mfem_matarray_container_destroy(PetscCtxRt ptr)
{
#if PETSC_VERSION_LT(3,23,0)
mfem::Array<Mat> *a = (mfem::Array<Mat>*)ptr;
PetscErrorCode ierr;
#else
mfem::Array<Mat> *a = *(mfem::Array<Mat>**)ptr;
#endif
PetscErrorCode ierr;
PetscFunctionBeginUser;
for (int i=0; i<a->Size(); i++)
@@ -5356,41 +5355,16 @@ static PetscErrorCode __mfem_matarray_container_destroy(void *ptr)
PetscFunctionReturn(PETSC_SUCCESS);
}
#if PETSC_VERSION_LT(3,23,0)
static PetscErrorCode __mfem_monitor_ctx_destroy(void **ctx)
#else
static PetscErrorCode __mfem_array_container_destroy(void **ptr)
static PetscErrorCode __mfem_monitor_ctx_destroy(PetscCtxRt ctx)
#endif
{
PetscErrorCode ierr;
PetscFunctionBeginUser;
ierr = PetscFree(*ptr); CHKERRQ(ierr);
PetscFunctionReturn(PETSC_SUCCESS);
}
static PetscErrorCode __mfem_matarray_container_destroy(void **ptr)
{
mfem::Array<Mat> *a = (mfem::Array<Mat>*)*ptr;
PetscErrorCode ierr;
PetscFunctionBeginUser;
for (int i=0; i<a->Size(); i++)
{
Mat M = (*a)[i];
MPI_Comm comm = PetscObjectComm((PetscObject)M);
ierr = MatDestroy(&M); CCHKERRQ(comm,ierr);
}
delete a;
PetscFunctionReturn(PETSC_SUCCESS);
}
#endif
static PetscErrorCode __mfem_monitor_ctx_destroy(void **ctx)
{
PetscErrorCode ierr;
PetscFunctionBeginUser;
ierr = PetscFree(*ctx); CHKERRQ(ierr);
ierr = PetscFree(*(void**)ctx); CHKERRQ(ierr);
PetscFunctionReturn(PETSC_SUCCESS);
}
@@ -5635,11 +5609,7 @@ static PetscErrorCode MatConvert_hypreParCSR_AIJ(hypre_ParCSRMatrix* hA,Mat* pA)
ierr = PetscContainerCreate(comm,&c); CHKERRQ(ierr);
ierr = PetscContainerSetPointer(c,ptrs[i]); CHKERRQ(ierr);
#if PETSC_VERSION_LT(3,23,0)
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
#else
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
#endif
CHKERRQ(ierr);
ierr = PetscObjectCompose((PetscObject)(*pA),names[i],(PetscObject)c);
CHKERRQ(ierr);
@@ -5733,11 +5703,7 @@ static PetscErrorCode MatConvert_hypreParCSR_IS(hypre_ParCSRMatrix* hA,Mat* pA)
ierr = PetscContainerCreate(PETSC_COMM_SELF,&c); CHKERRQ(ierr);
ierr = PetscContainerSetPointer(c,ptrs[i]); CHKERRQ(ierr);
#if PETSC_VERSION_LT(3,23,0)
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
#else
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
#endif
CHKERRQ(ierr);
ierr = PetscObjectCompose((PetscObject)lA,names[i],(PetscObject)c);
CHKERRQ(ierr);
+2 -2
View File
@@ -126,11 +126,11 @@ EXAMPLE_TEST_DIRS := examples
MINIAPP_SUBDIRS = common electromagnetics meshing performance tools \
toys nurbs gslib adjoint solvers shifted mtop parelag tribol autodiff dfem \
hooke multidomain dpg hdiv-linear-solver spde diag-smoothers contact \
fluids/navier fluids/schrodinger-flow
fluids/navier fluids/schrodinger-flow plasma
MINIAPP_DIRS := $(addprefix miniapps/,$(MINIAPP_SUBDIRS))
MINIAPP_TEST_DIRS := $(filter-out %/common,$(MINIAPP_DIRS))
MINIAPP_USE_COMMON := $(addprefix miniapps/,electromagnetics meshing tools \
toys shifted dpg diag-smoothers fluids/navier)
toys shifted dpg diag-smoothers fluids/navier plasma)
EM_DIRS = $(EXAMPLE_DIRS) $(MINIAPP_DIRS)
+1
View File
@@ -35,6 +35,7 @@ add_subdirectory(multidomain)
add_subdirectory(nurbs)
add_subdirectory(parelag)
add_subdirectory(performance)
add_subdirectory(plasma)
add_subdirectory(shifted)
add_subdirectory(solvers)
add_subdirectory(spde)
+25
View File
@@ -0,0 +1,25 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
if (MFEM_USE_MPI)
list(APPEND PLASMA_COMMON_SOURCES)
list(APPEND PLASMA_COMMON_HEADERS
plasma.hpp)
convert_filenames_to_full_paths(PLASMA_COMMON_SOURCES)
convert_filenames_to_full_paths(PLASMA_COMMON_HEADERS)
set(PLASMA_COMMON_FILES
EXTRA_SOURCES ${PLASMA_COMMON_SOURCES}
EXTRA_HEADERS ${PLASMA_COMMON_HEADERS})
endif()
+85
View File
@@ -0,0 +1,85 @@
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
# LICENSE and NOTICE for details. LLNL-CODE-806117.
#
# This file is part of the MFEM library. For more information and source code
# availability visit https://mfem.org.
#
# MFEM is free software; you can redistribute it and/or modify it under the
# terms of the BSD-3 license. We welcome feedback and contributions, see file
# CONTRIBUTING.md for details.
# Use the MFEM build directory
MFEM_DIR ?= ../..
MFEM_BUILD_DIR ?= ../..
SRC = $(if $(MFEM_DIR:../..=),$(MFEM_DIR)/miniapps/plasma/,)
CONFIG_MK = $(MFEM_BUILD_DIR)/config/config.mk
# Use the MFEM install directory
# MFEM_INSTALL_DIR = ../../mfem
# CONFIG_MK = $(MFEM_INSTALL_DIR)/share/mfem/config.mk
MFEM_LIB_FILE = mfem_is_not_built
-include $(CONFIG_MK)
SEQ_MINIAPPS =
PAR_MINIAPPS =
ifeq ($(MFEM_USE_MPI),NO)
MINIAPPS = $(SEQ_MINIAPPS)
else
MINIAPPS = $(PAR_MINIAPPS) $(SEQ_MINIAPPS)
endif
.SUFFIXES:
.SUFFIXES: .o .cpp .mk
.PHONY: all lib-common clean clean-build clean-exec
.PRECIOUS: %.o
COMMON_LIB = -L$(MFEM_BUILD_DIR)/miniapps/common -lmfem-common
# If MFEM_SHARED is set, add the ../common rpath
COMMON_LIB += $(if $(MFEM_SHARED:YES=),,\
$(if $(MFEM_USE_CUDA:YES=),$(CXX_XLINKER),$(CUDA_XLINKER))-rpath,$(abspath\
$(MFEM_BUILD_DIR)/miniapps/common))
COMMON_O=
# Remove built-in rules
%: %.cpp
%.o: %.cpp
all: $(MINIAPPS)
# Rules for building the miniapps
%: $(SRC)%.cpp $(COMMON_O) $(MFEM_LIB_FILE) $(CONFIG_MK) | lib-common
$(MFEM_CXX) $(MFEM_LINK_FLAGS) $< -o $@ $(COMMON_O) $(COMMON_LIB) \
$(MFEM_LIBS)
# Rules for compiling miniapp dependencies
$(COMMON_O) $(addsuffix _solver.o,$(MINIAPPS)): \
%.o: $(SRC)%.cpp $(SRC)%.hpp $(CONFIG_MK)
$(MFEM_CXX) $(MFEM_FLAGS) -c $(<) -o $(@)
# Rule for building lib-common
lib-common:
$(MAKE) -C $(MFEM_BUILD_DIR)/miniapps/common
MFEM_TESTS = MINIAPPS
include $(MFEM_TEST_MK)
# Testing: Specific execution options
RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
# Testing: "test" target and mfem-test* variables are defined in config/test.mk
# Generate an error message if the MFEM library is not built and exit
$(MFEM_LIB_FILE):
$(error The MFEM library is not built)
clean: clean-build clean-exec
clean-build:
rm -f *.o *~ $(SEQ_MINIAPPS) $(PAR_MINIAPPS)
rm -rf *.dSYM *.TVD.*breakpoints
clean-exec:
+62
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@@ -0,0 +1,62 @@
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_PLASMA_HPP
#define MFEM_PLASMA_HPP
#include <cmath>
#include <complex>
namespace mfem
{
namespace plasma
{
// Physical Constants
// Permittivity of Free Space (units F/m)
static const real_t epsilon0_ = 8.8541878176e-12;
// Permeability of Free Space (units H/m)
static const real_t mu0_ = 4.0e-7 * M_PI;
// Speed of light in Free Space (units m/s)
static const real_t c0_ = 1.0 / sqrt(epsilon0_ * mu0_);
// Impedance of Free Space (units Ohm)
static const real_t Z0_ = sqrt(mu0_ / epsilon0_);
static const real_t q_ = 1.602176634e-19; // Elementary charge in coulombs
static const real_t eV_ = 1.602176634e-19; // 1 eV in Joules
static const real_t amu_ = 1.660539040e-27; // Atomic mass unit in kilograms
static const real_t me_kg_ = 9.10938356e-31; // Mass of electron in kilograms
static const real_t me_u_ = 5.4857990907e-4; // Mass of electron in a.m.u
/**
Returns the cyclotron frequency in radians/second
m is the mass in a.m.u
q is the charge in units of elementary electric charge
B is the magnetic field magnitude in tesla
*/
inline real_t cyclotronFrequency(real_t B, real_t m, real_t q)
{
return fabs(q * q_ * B / (m * amu_));
}
typedef std::complex<real_t> complex_t;
} // namespace plasma
} // namespace mfem
#endif // MFEM_PLASMA_HPP
+5
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@@ -295,8 +295,13 @@ namespace Catch {
// Otherwise all supported compilers support COUNTER macro,
// but user still might want to turn it off
#if ( !defined(__JETBRAINS_IDE__) || __JETBRAINS_IDE__ >= 20170300L )
#if ( !(defined(__clang__) && __clang_major__ >= 22 ) )
// don't use __COUNTER__ if compiling with clang 22+ to avoid compiler warning
// https://github.com/llvm/llvm-project/pull/162662
// TODO: can enable if building with C2y
#define CATCH_INTERNAL_CONFIG_COUNTER
#endif
#endif
////////////////////////////////////////////////////////////////////////////////
+4 -2
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@@ -281,8 +281,10 @@ TEST_CASE("Nedelec Segment Finite Element",
REQUIRE( fe.GetRangeType() == (int) FiniteElement::VECTOR );
REQUIRE( fe.GetMapType() == (int) FiniteElement::H_CURL );
REQUIRE( fe.GetDerivType() == (int) FiniteElement::NONE );
REQUIRE( fe.GetDerivRangeType() == (int) FiniteElement::SCALAR );
REQUIRE( fe.GetDerivMapType() == (int) FiniteElement::INTEGRAL);
REQUIRE( fe.GetDerivRangeType() ==
(int) FiniteElement::UNKNOWN_RANGE_TYPE);
REQUIRE( fe.GetDerivMapType() ==
(int) FiniteElement::UNKNOWN_MAP_TYPE);
}
}
SECTION("Sizes for p = " + std::to_string(p))