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8519889074 |
+5
-1
@@ -652,6 +652,8 @@ foreach(TPL IN LISTS MFEM_TPLS)
|
||||
endif()
|
||||
endforeach(TPL)
|
||||
|
||||
# reverse to remove the first instance of entries in TPL_LIBRARIES
|
||||
# so later duplicates are kept (for dependency ordering)
|
||||
list(REVERSE TPL_LIBRARIES)
|
||||
list(REMOVE_DUPLICATES TPL_LIBRARIES)
|
||||
list(REVERSE TPL_LIBRARIES)
|
||||
@@ -1015,5 +1017,7 @@ install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/data
|
||||
# Create 'config.mk' from 'config.mk.in' for the build and install locations and
|
||||
# define install rules for 'config.mk' and 'test.mk'
|
||||
#-------------------------------------------------------------------------------
|
||||
|
||||
if (MFEM_USE_CUDA OR MFEM_USE_HIP)
|
||||
option(MFEM_EXPORT_GPU_CONFIG "Export config.mk for GPU-enabled downstream packages" ON)
|
||||
endif()
|
||||
mfem_export_mk_files()
|
||||
|
||||
@@ -701,7 +701,6 @@ endfunction(mfem_find_library)
|
||||
# Extract compile and link options needed by the given target.
|
||||
#
|
||||
function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
|
||||
if (NOT TARGET ${Target})
|
||||
return()
|
||||
endif()
|
||||
@@ -799,7 +798,12 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
|
||||
# message(STATUS "Lib = ${Lib}")
|
||||
# Filter-out generator expressions
|
||||
if (NOT ("${Lib}" MATCHES "^\\$"))
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
if(NOT ("${Lib}" STREQUAL "dl"))
|
||||
list(APPEND LinkOpts "${Lib}")
|
||||
else()
|
||||
# for some reason libdl doesn't include the "-l"
|
||||
list(APPEND LinkOpts "-ldl")
|
||||
endif()
|
||||
endif()
|
||||
else()
|
||||
mfem_get_target_options(${Lib} COpts LOpts)
|
||||
@@ -888,9 +892,18 @@ function(mfem_export_mk_files)
|
||||
set(${var} NO)
|
||||
endif()
|
||||
endforeach()
|
||||
# TODO: Add support for MFEM_USE_CUDA=YES
|
||||
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
|
||||
set(MFEM_HOST_CXX ${MFEM_CXX})
|
||||
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
|
||||
set(MFEM_CXX ${CMAKE_CUDA_COMPILER})
|
||||
if(MFEM_CUDA_COMPILER_IS_NVCC)
|
||||
set(MFEM_HOST_CXX ${CMAKE_CUDA_HOST_COMPILER})
|
||||
else()
|
||||
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
else()
|
||||
# mfem doesn't use enable_language(HIP)
|
||||
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
|
||||
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
|
||||
endif()
|
||||
set(MFEM_CPPFLAGS "")
|
||||
get_target_property(cxx_std mfem CXX_STANDARD)
|
||||
# For now, we ignore the setting of the CXX_EXTENSIONS property. If this
|
||||
@@ -900,6 +913,50 @@ function(mfem_export_mk_files)
|
||||
string(STRIP
|
||||
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
|
||||
MFEM_CXXFLAGS)
|
||||
if(MFEM_EXPORT_GPU_CONFIG)
|
||||
if (MFEM_USE_CUDA)
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} ${CMAKE_CUDA_FLAGS}")
|
||||
if (MFEM_CUDA_COMPILER_IS_NVCC)
|
||||
set(MFEM_CXXFLAGS "-x=cu ${MFEM_CXXFLAGS} -ccbin ${CMAKE_CXX_COMPILER} --forward-unknown-to-host-compiler")
|
||||
# The following intentionally hides CUDA deprecation warnings
|
||||
foreach(ENTRY IN LISTS CUDAToolkit_INCLUDE_DIRS)
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -isystem ${ENTRY}")
|
||||
endforeach()
|
||||
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
|
||||
# architecture flags not part of CMAKE_CUDA_FLAGS
|
||||
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -arch=${CMAKE_CUDA_ARCHITECTURES}")
|
||||
else()
|
||||
foreach (ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
|
||||
set(MFEM_CXXFLAGS
|
||||
"${MFEM_CXXFLAGS} -gencode arch=compute_${ENTRY},code=sm_${ENTRY}")
|
||||
endforeach()
|
||||
endif()
|
||||
endif()
|
||||
else()
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xcuda --cuda-path=${CUDAToolkit_LIBRARY_ROOT}")
|
||||
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
|
||||
# architecture flags not part of CMAKE_CUDA_FLAGS
|
||||
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
|
||||
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
|
||||
# TODO: not supported
|
||||
else()
|
||||
foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
|
||||
set(MFEM_CXXFLAGS "-cuda-gpu-arch=sm_${ENTRY} ${MFEM_CXXFLAGS}")
|
||||
endforeach()
|
||||
endif()
|
||||
endif()
|
||||
endif()
|
||||
elseif (MFEM_USE_HIP)
|
||||
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xhip")
|
||||
foreach(ENTRY IN LISTS CMAKE_HIP_ARCHITECTURES)
|
||||
set(MFEM_CXXFLAGS "--offload-arch=${ENTRY} ${MFEM_CXXFLAGS}")
|
||||
endforeach()
|
||||
endif()
|
||||
endif()
|
||||
set(MFEM_TPLFLAGS "")
|
||||
foreach(dir ${TPL_INCLUDE_DIRS})
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
|
||||
@@ -930,6 +987,9 @@ function(mfem_export_mk_files)
|
||||
set(MFEM_SHARED NO)
|
||||
set(MFEM_STATIC YES)
|
||||
endif()
|
||||
if (MFEM_USE_CUDA)
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} -lcudart")
|
||||
endif()
|
||||
set(MFEM_BUILD_TAG "${CMAKE_SYSTEM}")
|
||||
set(MFEM_PREFIX "${CMAKE_INSTALL_PREFIX}")
|
||||
# For the next 4 variables, these are the values for the build-tree version of
|
||||
@@ -938,8 +998,15 @@ function(mfem_export_mk_files)
|
||||
set(MFEM_LIB_DIR "${PROJECT_BINARY_DIR}")
|
||||
set(MFEM_TEST_MK "${PROJECT_SOURCE_DIR}/config/test.mk")
|
||||
set(MFEM_CONFIG_EXTRA "MFEM_BUILD_DIR ?= ${PROJECT_BINARY_DIR}")
|
||||
# TODO: CUDA/HIP support:
|
||||
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
|
||||
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
|
||||
if (MFEM_CUDA_COMPILER_IS_NVCC)
|
||||
set(MFEM_XLINKER "-Xlinker=")
|
||||
else()
|
||||
set(MFEM_XLINKER "${CMAKE_CUDA_LINKER_WRAPPER_FLAG}")
|
||||
endif()
|
||||
else()
|
||||
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
|
||||
endif()
|
||||
set(MFEM_MPIEXEC ${MPIEXEC})
|
||||
if (NOT MFEM_MPIEXEC)
|
||||
set(MFEM_MPIEXEC "mpirun")
|
||||
@@ -987,16 +1054,21 @@ function(mfem_export_mk_files)
|
||||
# handle interfaces (e.g., SCOREC::apf)
|
||||
if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*" OR "${lib}" MATCHES "ParMoonolith::.*")
|
||||
elseif (TARGET "${lib}")
|
||||
mfem_get_target_options(${lib} CompileOpts LinkOpts)
|
||||
mfem_get_target_options(${lib} CompileOpts2 LinkOpts2)
|
||||
# remove generator expressions
|
||||
string(GENEX_STRIP "${CompileOpts2}" CompileOpts)
|
||||
string(GENEX_STRIP "${LinkOpts2}" LinkOpts)
|
||||
# Removing duplicates may lead to issues:
|
||||
# list(REMOVE_DUPLICATES CompileOpts)
|
||||
# list(REMOVE_DUPLICATES LinkOpts)
|
||||
string(REPLACE ";" " " COpts "${CompileOpts}")
|
||||
string(REPLACE ";" " " LOpts "${LinkOpts}")
|
||||
# message(STATUS "${lib}[COpts]: '${COpts}'")
|
||||
# message(STATUS "${lib}[LOpts]: '${LOpts}'")
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpts}")
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpts}")
|
||||
# message(WARNING "${lib}[LinkOpts]: ${LinkOpts}")
|
||||
# message(WARNING "${lib}[CompileOpts]: ${CompileOpts}")
|
||||
foreach(LOpt IN LISTS LinkOpts)
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpt}")
|
||||
endforeach()
|
||||
foreach(COpt IN LISTS CompileOpts)
|
||||
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpt}")
|
||||
endforeach()
|
||||
# message(FATAL_ERROR "***** interface lib found ... exiting *****")
|
||||
# handle static and shared libs
|
||||
elseif ("${suffix}" STREQUAL "${CMAKE_SHARED_LIBRARY_SUFFIX}")
|
||||
@@ -1004,7 +1076,7 @@ function(mfem_export_mk_files)
|
||||
get_filename_component(fullLibName ${lib} NAME_WE)
|
||||
string(REGEX REPLACE "^lib" "" libname ${fullLibName})
|
||||
set(MFEM_EXT_LIBS
|
||||
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
|
||||
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
|
||||
else()
|
||||
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${lib}")
|
||||
endif()
|
||||
@@ -1013,7 +1085,7 @@ function(mfem_export_mk_files)
|
||||
# Create the build-tree version of 'config.mk'
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
|
||||
"${PROJECT_BINARY_DIR}/config/config.mk")
|
||||
"${PROJECT_BINARY_DIR}/config/config.mk" @ONLY)
|
||||
# Copy 'test.mk' from the source-tree to the build-tree
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/test.mk"
|
||||
@@ -1031,7 +1103,7 @@ function(mfem_export_mk_files)
|
||||
# Create the install-tree version of 'config.mk'
|
||||
configure_file(
|
||||
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
|
||||
"${PROJECT_BINARY_DIR}/config/config-install.mk")
|
||||
"${PROJECT_BINARY_DIR}/config/config-install.mk" @ONLY)
|
||||
|
||||
# Install rules for 'config.mk' and 'test.mk'
|
||||
install(FILES ${PROJECT_SOURCE_DIR}/config/test.mk
|
||||
|
||||
@@ -66,6 +66,26 @@
|
||||
using namespace std;
|
||||
using namespace mfem;
|
||||
|
||||
class VisServer
|
||||
{
|
||||
const char *path{};
|
||||
int port{-1};
|
||||
|
||||
struct Deleter { void operator()(FILE *); };
|
||||
std::unique_ptr<FILE, Deleter> fglvis;
|
||||
|
||||
void Open();
|
||||
public:
|
||||
VisServer(const char *path_, int port_ = 19916)
|
||||
: path(path_), port(port_) { Open(); }
|
||||
|
||||
explicit VisServer() = default;
|
||||
|
||||
inline const char *GetPath() const { return path; }
|
||||
inline int GetPort() const { return port; }
|
||||
inline bool IsOpen() const { return (fglvis != nullptr); }
|
||||
};
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
// 1. Initialize MPI and HYPRE.
|
||||
@@ -82,6 +102,7 @@ int main(int argc, char *argv[])
|
||||
bool fa = false;
|
||||
const char *device_config = "cpu";
|
||||
bool visualization = true;
|
||||
const char *visserver = "";
|
||||
bool algebraic_ceed = false;
|
||||
|
||||
OptionsParser args(argc, argv);
|
||||
@@ -106,6 +127,8 @@ int main(int argc, char *argv[])
|
||||
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
|
||||
"--no-visualization",
|
||||
"Enable or disable GLVis visualization.");
|
||||
args.AddOption(&visserver, "-vs", "--visualization-server",
|
||||
"Path to GLVis binary to start own server.");
|
||||
args.Parse();
|
||||
if (!args.Good())
|
||||
{
|
||||
@@ -301,6 +324,14 @@ int main(int argc, char *argv[])
|
||||
{
|
||||
char vishost[] = "localhost";
|
||||
int visport = 19916;
|
||||
|
||||
VisServer server;
|
||||
if (strlen(visserver) > 0)
|
||||
{
|
||||
server = VisServer(visserver, visport);
|
||||
visport = server.GetPort();
|
||||
}
|
||||
|
||||
socketstream sol_sock(vishost, visport);
|
||||
sol_sock << "parallel " << num_procs << " " << myid << "\n";
|
||||
sol_sock.precision(8);
|
||||
@@ -315,3 +346,66 @@ int main(int argc, char *argv[])
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
void VisServer::Open()
|
||||
{
|
||||
if (!path || strlen(path) <= 0) { return; }
|
||||
|
||||
#ifdef MFEM_USE_MPI
|
||||
if (Mpi::Root())
|
||||
#endif // MFEM_USE_MPI
|
||||
{
|
||||
// Open a log file
|
||||
FILE *ftmp = popen("mktemp --tmpdir glvis-log.XXXXXX", "r");
|
||||
constexpr size_t ssize = 256;
|
||||
char stmp[ssize];
|
||||
fgets(stmp, ssize, ftmp);
|
||||
pclose(ftmp);
|
||||
int len = strlen(stmp);
|
||||
if (len > 0 && stmp[len-1] == '\n') { stmp[--len] = '\0'; }
|
||||
std::cout << "Starting GLVis log in: " << stmp << std::endl;
|
||||
|
||||
// Start the server
|
||||
std::stringstream ss;
|
||||
ss << "trap '' SIGPIPE && " << path <<
|
||||
" -no-pr -no-ex 2>&1 | tee \"" << stmp <<
|
||||
"\" 2> /dev/null | grep -m 1 ^GLVIS_SERVER_PORT";
|
||||
fglvis.reset(popen(ss.str().c_str(), "r"));
|
||||
|
||||
// Capture the port number
|
||||
char line[ssize];
|
||||
bool captured = false;
|
||||
while (fgets(line, ssize, fglvis.get()))
|
||||
{
|
||||
if (strncmp(line, "GLVIS_SERVER_PORT=", 18) == 0)
|
||||
{
|
||||
sscanf(line, "GLVIS_SERVER_PORT=%d", &port);
|
||||
captured = true;
|
||||
break;
|
||||
}
|
||||
}
|
||||
if (captured)
|
||||
{
|
||||
std::cout << "Started GLVis server at port: " << port << std::endl;
|
||||
}
|
||||
else
|
||||
{
|
||||
std::cerr << "GLVis server did not start normally." << std::endl;
|
||||
}
|
||||
}
|
||||
#ifdef MFEM_USE_MPI
|
||||
MPI_Bcast(&port, 1, MPI_INT, 0, MPI_COMM_WORLD);
|
||||
#endif // MFEM_USE_MPI
|
||||
}
|
||||
|
||||
void VisServer::Deleter::operator()(FILE *f)
|
||||
{
|
||||
if (f != nullptr)
|
||||
{
|
||||
int ierr = pclose(f);
|
||||
if (ierr != 0)
|
||||
{
|
||||
std::cerr << "GLVis server pclose() returns: " << ierr << std::endl;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -82,6 +82,25 @@ public:
|
||||
/// underlying #fes
|
||||
int VectorDim() const;
|
||||
|
||||
/// Copy assignment. Only the data of the base class Vector is copied.
|
||||
/** It is assumed that this object and @a rhs use FiniteElementSpace%s that
|
||||
have the same size.
|
||||
|
||||
@note Defining this method overwrites the implicitly defined copy
|
||||
assignment operator. */
|
||||
ComplexGridFunction &operator=(const ComplexGridFunction &rhs)
|
||||
{ return operator=((const Vector &)rhs); }
|
||||
|
||||
/// Copy the data from @a v.
|
||||
/** The size of @a v must be equal to double of the size of the associated
|
||||
FiniteElementSpace #fes. */
|
||||
ComplexGridFunction &operator=(const Vector &v)
|
||||
{
|
||||
MFEM_ASSERT(fes && v.Size() == 2*fes->GetVSize(), "");
|
||||
Vector::operator=(v);
|
||||
return *this;
|
||||
}
|
||||
|
||||
/// Assign constant values to the ComplexGridFunction data.
|
||||
ComplexGridFunction &operator=(const std::complex<real_t> & value)
|
||||
{ *gfr = value.real(); *gfi = value.imag(); return *this; }
|
||||
|
||||
+11
-8
@@ -90,8 +90,8 @@ void map_quadrature_data_to_fields_impl(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor");
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
" for this field descriptor");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -169,8 +169,9 @@ void map_quadrature_data_to_fields_tensor_impl_1d(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor with sum factorization on tensor product elements");
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
"for this field descriptor with sum factorization on"
|
||||
" tensor product elements");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -306,8 +307,9 @@ void map_quadrature_data_to_fields_tensor_impl_2d(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor with sum factorization on tensor product elements");
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
" for this field descriptor with sum factorization on"
|
||||
" tensor product elements");
|
||||
}
|
||||
}
|
||||
|
||||
@@ -492,8 +494,9 @@ void map_quadrature_data_to_fields_tensor_impl_3d(
|
||||
}
|
||||
else
|
||||
{
|
||||
MFEM_ABORT("quadrature data mapping to field is not implemented for"
|
||||
" this field descriptor with sum factorization on tensor product elements");
|
||||
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
|
||||
" for this field descriptor with sum factorization on"
|
||||
" tensor product elements");
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
+82
-5
@@ -1044,9 +1044,50 @@ void VectorFiniteElement::SetDerivMembers()
|
||||
switch (map_type)
|
||||
{
|
||||
case H_DIV:
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
switch (dim)
|
||||
{
|
||||
case 3: // div: 3D H_DIV -> 3D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
case 2: // div: 2D H_DIV -> 2D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_DIV_R2D:
|
||||
switch (dim)
|
||||
{
|
||||
case 2: // div: 2D H_DIV_R2D -> 2D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
case 1: // div: 1D H_DIV_R2D -> 1D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_DIV_R1D:
|
||||
switch (dim)
|
||||
{
|
||||
case 1: // div: 1D H_DIV_R1D -> 1D INTEGRAL
|
||||
deriv_type = DIV;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_CURL:
|
||||
switch (dim)
|
||||
@@ -1064,13 +1105,49 @@ void VectorFiniteElement::SetDerivMembers()
|
||||
break;
|
||||
case 1:
|
||||
deriv_type = NONE;
|
||||
deriv_range_type = SCALAR;
|
||||
deriv_map_type = INTEGRAL;
|
||||
deriv_range_type = UNKNOWN_RANGE_TYPE;
|
||||
deriv_map_type = UNKNOWN_MAP_TYPE;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_CURL_R2D:
|
||||
switch (dim)
|
||||
{
|
||||
case 2:
|
||||
// curl: 2D H_CURL_R2D -> H_DIV_R2D
|
||||
deriv_type = CURL;
|
||||
deriv_range_type = VECTOR;
|
||||
deriv_map_type = H_DIV_R2D;
|
||||
break;
|
||||
case 1:
|
||||
// curl: 1D H_CURL_R2D -> H_DIV_R2D
|
||||
deriv_type = CURL;
|
||||
deriv_range_type = VECTOR;
|
||||
deriv_map_type = H_DIV_R2D;
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
case H_CURL_R1D:
|
||||
switch (dim)
|
||||
{
|
||||
case 1:
|
||||
// curl: 1D H_CURL_R1D -> H_DIV_R1D
|
||||
deriv_type = CURL;
|
||||
deriv_range_type = VECTOR;
|
||||
deriv_map_type = H_DIV_R1D;
|
||||
break;
|
||||
case 0:
|
||||
deriv_type = NONE;
|
||||
deriv_range_type = UNKNOWN_RANGE_TYPE;
|
||||
deriv_map_type = UNKNOWN_MAP_TYPE;
|
||||
default:
|
||||
MFEM_ABORT("Invalid dimension, Dim = " << dim);
|
||||
}
|
||||
break;
|
||||
default:
|
||||
MFEM_ABORT("Invalid MapType = " << map_type);
|
||||
}
|
||||
|
||||
+31
-3
@@ -295,10 +295,20 @@ public:
|
||||
$ u(x) = (1/w) \hat u(\hat x) $ */
|
||||
H_DIV, /**< For vector fields; preserves surface integrals of the
|
||||
normal component $ u(x) = (J/w) \hat u(\hat x) $ */
|
||||
H_CURL /**< For vector fields; preserves line integrals of the
|
||||
H_CURL, /**< For vector fields; preserves line integrals of the
|
||||
tangential component
|
||||
$ u(x) = J^{-t} \hat u(\hat x) $ (square J),
|
||||
$ u(x) = J(J^t J)^{-1} \hat u(\hat x) $ (general J) */
|
||||
H_DIV_R2D, /**< For 3-component vector fields in 2D; equivalent to a
|
||||
direct sum of an H_DIV basis and an INTEGRAL basis */
|
||||
H_CURL_R2D,/**< For 3-component vector fields in 2D; equivalent to a
|
||||
direct sum of an H_CURL basis and a VALUE basis */
|
||||
H_DIV_R1D, /**< For 3-component vector fields in 1D; equivalent to a
|
||||
direct sum of a VALUE basis and a pair of INTEGRAL
|
||||
bases */
|
||||
H_CURL_R1D /**< For 3-component vector fields in 1D; equivalent to a
|
||||
direct sum of an INTEGRAL basis and a pair of VALUE
|
||||
bases */
|
||||
};
|
||||
|
||||
/** @brief Enumeration for DerivType: defines which derivative method
|
||||
@@ -330,12 +340,28 @@ public:
|
||||
int GetDim() const { return dim; }
|
||||
|
||||
/** @brief Returns the vector dimension for vector-valued finite elements,
|
||||
which is also the dimension of the interpolation operation. */
|
||||
which is also the dimension of the interpolation operation and the
|
||||
width of the DenseMatrix argument in
|
||||
CalcVShape(const IntegrationPoint &ip, DenseMatrix &shape). */
|
||||
int GetRangeDim() const { return vdim; }
|
||||
|
||||
/// Returns the dimension of the curl for vector-valued finite elements.
|
||||
/** @brief Returns the vector dimension, in physical space, for
|
||||
vector-valued finite elements, which is also the width of the
|
||||
DenseMatrix argument in
|
||||
CalcPhysVShape(ElementTransformation &Trans, DenseMatrix &shape). */
|
||||
int GetPhysRangeDim(int /* space_dim */) const { return vdim; }
|
||||
|
||||
/** Returns the dimension of the curl for vector-valued finite elements,
|
||||
which is also the width of the DenseMatrix argument in
|
||||
CalcCurlShape(const IntegrationPoint &ip, DenseMatrix &curl_shape). */
|
||||
int GetCurlDim() const { return cdim; }
|
||||
|
||||
/** Returns the dimension, in physical space, of the curl for vector-valued
|
||||
finite elements, which is also the width of the DenseMatrix argument in
|
||||
CalcPhysCurlShape(ElementTransformation &Trans, DenseMatrix &curl_shape).
|
||||
*/
|
||||
int GetPhysCurlDim(int /* space_dim */) const { return cdim; }
|
||||
|
||||
/// Returns the Geometry::Type of the reference element.
|
||||
Geometry::Type GetGeomType() const { return geom_type; }
|
||||
|
||||
@@ -990,6 +1016,8 @@ protected:
|
||||
public:
|
||||
VectorFiniteElement(int D, Geometry::Type G, int Do, int O, int M,
|
||||
int F = FunctionSpace::Pk);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const { return space_dim; }
|
||||
};
|
||||
|
||||
/// @brief Class for computing 1D special polynomials and their associated basis
|
||||
|
||||
+4
-4
@@ -2531,7 +2531,7 @@ void ND_FuentesPyramidElement::calcCurlBasis(const int p,
|
||||
|
||||
ND_R1D_PointElement::ND_R1D_PointElement(int p)
|
||||
: VectorFiniteElement(1, Geometry::POINT, 2, p,
|
||||
H_CURL, FunctionSpace::Pk)
|
||||
H_CURL_R1D, FunctionSpace::Pk)
|
||||
{
|
||||
// VectorFiniteElement::SetDerivMembers doesn't support 0D H_CURL elements
|
||||
// so we mimic a 1D element and then correct the dimension here.
|
||||
@@ -2562,7 +2562,7 @@ ND_R1D_SegmentElement::ND_R1D_SegmentElement(const int p,
|
||||
const int cb_type,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 2, p,
|
||||
H_CURL, FunctionSpace::Pk),
|
||||
H_CURL_R1D, FunctionSpace::Pk),
|
||||
dof2tk(dof),
|
||||
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
|
||||
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
|
||||
@@ -2839,7 +2839,7 @@ ND_R2D_SegmentElement::ND_R2D_SegmentElement(const int p,
|
||||
const int cb_type,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, 2 * p + 1, p,
|
||||
H_CURL, FunctionSpace::Pk),
|
||||
H_CURL_R2D, FunctionSpace::Pk),
|
||||
dof2tk(dof),
|
||||
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
|
||||
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
|
||||
@@ -3023,7 +3023,7 @@ void ND_R2D_SegmentElement::Project(VectorCoefficient &vc,
|
||||
ND_R2D_FiniteElement::ND_R2D_FiniteElement(int p, Geometry::Type G, int Do,
|
||||
const real_t *tk_fe)
|
||||
: VectorFiniteElement(2, G, Do, p,
|
||||
H_CURL, FunctionSpace::Pk),
|
||||
H_CURL_R2D, FunctionSpace::Pk),
|
||||
tk(tk_fe),
|
||||
dof_map(dof),
|
||||
dof2tk(dof)
|
||||
|
||||
@@ -663,6 +663,9 @@ public:
|
||||
const int cb_type = BasisType::GaussLobatto,
|
||||
const int ob_type = BasisType::GaussLegendre);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const { return 2; }
|
||||
int GetPhysCurlDim(int space_dim) const { return 1; }
|
||||
|
||||
void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const override;
|
||||
|
||||
@@ -705,6 +708,9 @@ private:
|
||||
DenseMatrix &I) const;
|
||||
|
||||
public:
|
||||
int GetPhysRangeDim(int space_dim) const { return 3; }
|
||||
int GetPhysCurlDim(int space_dim) const { return 3; }
|
||||
|
||||
using FiniteElement::CalcVShape;
|
||||
using FiniteElement::CalcPhysCurlShape;
|
||||
|
||||
|
||||
+3
-3
@@ -2006,7 +2006,7 @@ RT_R1D_SegmentElement::RT_R1D_SegmentElement(const int p,
|
||||
const int cb_type,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 4, p + 1,
|
||||
H_DIV, FunctionSpace::Pk),
|
||||
H_DIV_R1D, FunctionSpace::Pk),
|
||||
dof2nk(dof),
|
||||
cbasis1d(poly1d.GetBasis(p + 1, VerifyClosed(cb_type))),
|
||||
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
|
||||
@@ -2281,7 +2281,7 @@ const real_t RT_R2D_SegmentElement::nk[2] = { 0.,1.};
|
||||
RT_R2D_SegmentElement::RT_R2D_SegmentElement(const int p,
|
||||
const int ob_type)
|
||||
: VectorFiniteElement(1, Geometry::SEGMENT, p + 1, p + 1,
|
||||
H_DIV, FunctionSpace::Pk),
|
||||
H_DIV_R2D, FunctionSpace::Pk),
|
||||
dof2nk(dof),
|
||||
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
|
||||
{
|
||||
@@ -2392,7 +2392,7 @@ void RT_R2D_SegmentElement::LocalInterpolation(const VectorFiniteElement &cfe,
|
||||
RT_R2D_FiniteElement::RT_R2D_FiniteElement(int p, Geometry::Type G, int Do,
|
||||
const real_t *nk_fe)
|
||||
: VectorFiniteElement(2, G, Do, p + 1,
|
||||
H_DIV, FunctionSpace::Pk),
|
||||
H_DIV_R2D, FunctionSpace::Pk),
|
||||
nk(nk_fe),
|
||||
dof_map(dof),
|
||||
dof2nk(dof)
|
||||
|
||||
@@ -510,6 +510,9 @@ public:
|
||||
RT_R2D_SegmentElement(const int p,
|
||||
const int ob_type = BasisType::GaussLegendre);
|
||||
|
||||
int GetPhysRangeDim(int space_dim) const { return 2; }
|
||||
int GetPhysCurlDim(int space_dim) const { return 0; }
|
||||
|
||||
void CalcVShape(const IntegrationPoint &ip,
|
||||
DenseMatrix &shape) const override;
|
||||
|
||||
@@ -547,6 +550,9 @@ private:
|
||||
DenseMatrix &I) const;
|
||||
|
||||
public:
|
||||
int GetPhysRangeDim(int space_dim) const { return 3; }
|
||||
int GetPhysCurlDim(int space_dim) const { return 0; }
|
||||
|
||||
using FiniteElement::CalcVShape;
|
||||
|
||||
void CalcVShape(ElementTransformation &Trans,
|
||||
|
||||
+44
-78
@@ -38,6 +38,13 @@
|
||||
#if PETSC_VERSION_LT(3,19,0)
|
||||
#define PETSC_SUCCESS 0
|
||||
#endif
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
#define PetscContainerSetCtxDestroy(A,B) PetscContainerSetUserDestroy(A,B)
|
||||
typedef PetscErrorCode (PetscCtxDestroyFn)(void**);
|
||||
#endif
|
||||
#if PETSC_VERSION_LT(3,24,0)
|
||||
typedef PetscErrorCode KSPMonitorFn(KSP,PetscInt,PetscReal,void*);
|
||||
#endif
|
||||
|
||||
#include <fstream>
|
||||
#include <iomanip>
|
||||
@@ -77,13 +84,17 @@ static PetscErrorCode __mfem_mat_shell_apply_transpose(Mat,Vec,Vec);
|
||||
static PetscErrorCode __mfem_mat_shell_destroy(Mat);
|
||||
static PetscErrorCode __mfem_mat_shell_copy(Mat,Mat,MatStructure);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
static PetscErrorCode __mfem_array_container_destroy(void*);
|
||||
static PetscErrorCode __mfem_matarray_container_destroy(void *);
|
||||
#else
|
||||
static PetscErrorCode __mfem_array_container_destroy(void**);
|
||||
static PetscErrorCode __mfem_matarray_container_destroy(void**);
|
||||
typedef void *PetscCtxRt;
|
||||
#elif PETSC_VERSION_LT(3,25,0)
|
||||
typedef void **PetscCtxRt;
|
||||
#endif
|
||||
static PetscErrorCode __mfem_array_container_destroy(PetscCtxRt);
|
||||
static PetscErrorCode __mfem_matarray_container_destroy(PetscCtxRt);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
static PetscErrorCode __mfem_monitor_ctx_destroy(void**);
|
||||
#else
|
||||
static PetscErrorCode __mfem_monitor_ctx_destroy(PetscCtxRt);
|
||||
#endif
|
||||
|
||||
// auxiliary functions
|
||||
static PetscErrorCode Convert_Array_IS(MPI_Comm,bool,const mfem::Array<int>*,
|
||||
@@ -1317,11 +1328,7 @@ BlockDiagonalConstructor(MPI_Comm comm,
|
||||
|
||||
ierr = PetscContainerCreate(comm,&c); CCHKERRQ(comm,ierr);
|
||||
ierr = PetscContainerSetPointer(c,ptrs[i]); CCHKERRQ(comm,ierr);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
|
||||
#else
|
||||
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
|
||||
#endif
|
||||
CCHKERRQ(comm,ierr);
|
||||
ierr = PetscObjectCompose((PetscObject)A,names[i],(PetscObject)c);
|
||||
CCHKERRQ(comm,ierr);
|
||||
@@ -1648,11 +1655,7 @@ void PetscParMatrix::ConvertOperator(MPI_Comm comm, const Operator &op, Mat* A,
|
||||
PetscContainer c;
|
||||
ierr = PetscContainerCreate(comm,&c); CCHKERRQ(comm,ierr);
|
||||
ierr = PetscContainerSetPointer(c,vmatsl2l); PCHKERRQ(c,ierr);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
ierr = PetscContainerSetUserDestroy(c,__mfem_matarray_container_destroy);
|
||||
#else
|
||||
ierr = PetscContainerSetCtxDestroy(c,__mfem_matarray_container_destroy);
|
||||
#endif
|
||||
PCHKERRQ(c,ierr);
|
||||
ierr = PetscObjectCompose((PetscObject)(*A),"_MatIS_PtAP_l2l",(PetscObject)c);
|
||||
PCHKERRQ((*A),ierr);
|
||||
@@ -1748,11 +1751,7 @@ void PetscParMatrix::ConvertOperator(MPI_Comm comm, const Operator &op, Mat* A,
|
||||
|
||||
ierr = PetscContainerCreate(PETSC_COMM_SELF,&c); PCHKERRQ(B,ierr);
|
||||
ierr = PetscContainerSetPointer(c,ptrs[i]); PCHKERRQ(B,ierr);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
|
||||
#else
|
||||
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
|
||||
#endif
|
||||
PCHKERRQ(B,ierr);
|
||||
ierr = PetscObjectCompose((PetscObject)(B),names[i],(PetscObject)c);
|
||||
PCHKERRQ(B,ierr);
|
||||
@@ -2198,11 +2197,7 @@ PetscParMatrix * RAP(PetscParMatrix *Rt, PetscParMatrix *A, PetscParMatrix *P)
|
||||
ierr = PetscContainerCreate(PetscObjectComm((PetscObject)B),&c);
|
||||
PCHKERRQ(B,ierr);
|
||||
ierr = PetscContainerSetPointer(c,vmatsl2l); PCHKERRQ(c,ierr);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
ierr = PetscContainerSetUserDestroy(c,__mfem_matarray_container_destroy);
|
||||
#else
|
||||
ierr = PetscContainerSetCtxDestroy(c,__mfem_matarray_container_destroy);
|
||||
#endif
|
||||
PCHKERRQ(c,ierr);
|
||||
ierr = PetscObjectCompose((PetscObject)B,"_MatIS_PtAP_l2l",(PetscObject)c);
|
||||
PCHKERRQ(B,ierr);
|
||||
@@ -2485,7 +2480,6 @@ void PetscSolver::SetMaxIter(int max_iter)
|
||||
|
||||
void PetscSolver::SetPrintLevel(int plev)
|
||||
{
|
||||
typedef PetscErrorCode (*myPetscFunc)(void**);
|
||||
PetscViewerAndFormat *vf = NULL;
|
||||
PetscViewer viewer = PETSC_VIEWER_STDOUT_(PetscObjectComm(obj));
|
||||
|
||||
@@ -2498,7 +2492,6 @@ void PetscSolver::SetPrintLevel(int plev)
|
||||
{
|
||||
// there are many other options, see the function KSPSetFromOptions() in
|
||||
// src/ksp/ksp/interface/itcl.c
|
||||
typedef PetscErrorCode (*myMonitor)(KSP,PetscInt,PetscReal,void*);
|
||||
KSP ksp = (KSP)obj;
|
||||
if (plev >= 0)
|
||||
{
|
||||
@@ -2507,29 +2500,29 @@ void PetscSolver::SetPrintLevel(int plev)
|
||||
if (plev == 1)
|
||||
{
|
||||
#if PETSC_VERSION_LT(3,15,0)
|
||||
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorDefault,vf,
|
||||
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorDefault,vf,
|
||||
#else
|
||||
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorResidual,vf,
|
||||
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorResidual,vf,
|
||||
#endif
|
||||
(myPetscFunc)PetscViewerAndFormatDestroy);
|
||||
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
|
||||
PCHKERRQ(ksp,ierr);
|
||||
}
|
||||
else if (plev > 1)
|
||||
{
|
||||
ierr = KSPSetComputeSingularValues(ksp,PETSC_TRUE); PCHKERRQ(ksp,ierr);
|
||||
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorSingularValue,vf,
|
||||
(myPetscFunc)PetscViewerAndFormatDestroy);
|
||||
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorSingularValue,vf,
|
||||
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
|
||||
PCHKERRQ(ksp,ierr);
|
||||
if (plev > 2)
|
||||
{
|
||||
ierr = PetscViewerAndFormatCreate(viewer,PETSC_VIEWER_DEFAULT,&vf);
|
||||
PCHKERRQ(viewer,ierr);
|
||||
#if PETSC_VERSION_LT(3,15,0)
|
||||
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorTrueResidualNorm,vf,
|
||||
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorTrueResidualNorm,vf,
|
||||
#else
|
||||
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorTrueResidual,vf,
|
||||
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorTrueResidual,vf,
|
||||
#endif
|
||||
(myPetscFunc)PetscViewerAndFormatDestroy);
|
||||
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
|
||||
PCHKERRQ(ksp,ierr);
|
||||
}
|
||||
}
|
||||
@@ -2545,7 +2538,7 @@ void PetscSolver::SetPrintLevel(int plev)
|
||||
if (plev > 0)
|
||||
{
|
||||
ierr = SNESMonitorSet(snes,(myMonitor)SNESMonitorDefault,vf,
|
||||
(myPetscFunc)PetscViewerAndFormatDestroy);
|
||||
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
|
||||
PCHKERRQ(snes,ierr);
|
||||
}
|
||||
}
|
||||
@@ -5329,21 +5322,27 @@ static PetscErrorCode __mfem_pc_shell_destroy(PC pc)
|
||||
PetscFunctionReturn(PETSC_SUCCESS);
|
||||
}
|
||||
|
||||
static PetscErrorCode __mfem_array_container_destroy(PetscCtxRt ptr)
|
||||
{
|
||||
PetscErrorCode ierr;
|
||||
|
||||
PetscFunctionBeginUser;
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
|
||||
static PetscErrorCode __mfem_array_container_destroy(void *ptr)
|
||||
{
|
||||
PetscErrorCode ierr;
|
||||
|
||||
PetscFunctionBeginUser;
|
||||
ierr = PetscFree(ptr); CHKERRQ(ierr);
|
||||
#else
|
||||
ierr = PetscFree(*(void**)ptr); CHKERRQ(ierr);
|
||||
#endif
|
||||
PetscFunctionReturn(PETSC_SUCCESS);
|
||||
}
|
||||
|
||||
static PetscErrorCode __mfem_matarray_container_destroy(void *ptr)
|
||||
static PetscErrorCode __mfem_matarray_container_destroy(PetscCtxRt ptr)
|
||||
{
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
mfem::Array<Mat> *a = (mfem::Array<Mat>*)ptr;
|
||||
PetscErrorCode ierr;
|
||||
#else
|
||||
mfem::Array<Mat> *a = *(mfem::Array<Mat>**)ptr;
|
||||
#endif
|
||||
PetscErrorCode ierr;
|
||||
|
||||
PetscFunctionBeginUser;
|
||||
for (int i=0; i<a->Size(); i++)
|
||||
@@ -5356,41 +5355,16 @@ static PetscErrorCode __mfem_matarray_container_destroy(void *ptr)
|
||||
PetscFunctionReturn(PETSC_SUCCESS);
|
||||
}
|
||||
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
static PetscErrorCode __mfem_monitor_ctx_destroy(void **ctx)
|
||||
#else
|
||||
|
||||
static PetscErrorCode __mfem_array_container_destroy(void **ptr)
|
||||
static PetscErrorCode __mfem_monitor_ctx_destroy(PetscCtxRt ctx)
|
||||
#endif
|
||||
{
|
||||
PetscErrorCode ierr;
|
||||
|
||||
PetscFunctionBeginUser;
|
||||
ierr = PetscFree(*ptr); CHKERRQ(ierr);
|
||||
PetscFunctionReturn(PETSC_SUCCESS);
|
||||
}
|
||||
|
||||
static PetscErrorCode __mfem_matarray_container_destroy(void **ptr)
|
||||
{
|
||||
mfem::Array<Mat> *a = (mfem::Array<Mat>*)*ptr;
|
||||
PetscErrorCode ierr;
|
||||
|
||||
PetscFunctionBeginUser;
|
||||
for (int i=0; i<a->Size(); i++)
|
||||
{
|
||||
Mat M = (*a)[i];
|
||||
MPI_Comm comm = PetscObjectComm((PetscObject)M);
|
||||
ierr = MatDestroy(&M); CCHKERRQ(comm,ierr);
|
||||
}
|
||||
delete a;
|
||||
PetscFunctionReturn(PETSC_SUCCESS);
|
||||
}
|
||||
|
||||
#endif
|
||||
|
||||
static PetscErrorCode __mfem_monitor_ctx_destroy(void **ctx)
|
||||
{
|
||||
PetscErrorCode ierr;
|
||||
|
||||
PetscFunctionBeginUser;
|
||||
ierr = PetscFree(*ctx); CHKERRQ(ierr);
|
||||
ierr = PetscFree(*(void**)ctx); CHKERRQ(ierr);
|
||||
PetscFunctionReturn(PETSC_SUCCESS);
|
||||
}
|
||||
|
||||
@@ -5635,11 +5609,7 @@ static PetscErrorCode MatConvert_hypreParCSR_AIJ(hypre_ParCSRMatrix* hA,Mat* pA)
|
||||
|
||||
ierr = PetscContainerCreate(comm,&c); CHKERRQ(ierr);
|
||||
ierr = PetscContainerSetPointer(c,ptrs[i]); CHKERRQ(ierr);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
|
||||
#else
|
||||
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
|
||||
#endif
|
||||
CHKERRQ(ierr);
|
||||
ierr = PetscObjectCompose((PetscObject)(*pA),names[i],(PetscObject)c);
|
||||
CHKERRQ(ierr);
|
||||
@@ -5733,11 +5703,7 @@ static PetscErrorCode MatConvert_hypreParCSR_IS(hypre_ParCSRMatrix* hA,Mat* pA)
|
||||
|
||||
ierr = PetscContainerCreate(PETSC_COMM_SELF,&c); CHKERRQ(ierr);
|
||||
ierr = PetscContainerSetPointer(c,ptrs[i]); CHKERRQ(ierr);
|
||||
#if PETSC_VERSION_LT(3,23,0)
|
||||
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
|
||||
#else
|
||||
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
|
||||
#endif
|
||||
CHKERRQ(ierr);
|
||||
ierr = PetscObjectCompose((PetscObject)lA,names[i],(PetscObject)c);
|
||||
CHKERRQ(ierr);
|
||||
|
||||
@@ -126,11 +126,11 @@ EXAMPLE_TEST_DIRS := examples
|
||||
MINIAPP_SUBDIRS = common electromagnetics meshing performance tools \
|
||||
toys nurbs gslib adjoint solvers shifted mtop parelag tribol autodiff dfem \
|
||||
hooke multidomain dpg hdiv-linear-solver spde diag-smoothers contact \
|
||||
fluids/navier fluids/schrodinger-flow
|
||||
fluids/navier fluids/schrodinger-flow plasma
|
||||
MINIAPP_DIRS := $(addprefix miniapps/,$(MINIAPP_SUBDIRS))
|
||||
MINIAPP_TEST_DIRS := $(filter-out %/common,$(MINIAPP_DIRS))
|
||||
MINIAPP_USE_COMMON := $(addprefix miniapps/,electromagnetics meshing tools \
|
||||
toys shifted dpg diag-smoothers fluids/navier)
|
||||
toys shifted dpg diag-smoothers fluids/navier plasma)
|
||||
|
||||
EM_DIRS = $(EXAMPLE_DIRS) $(MINIAPP_DIRS)
|
||||
|
||||
|
||||
@@ -35,6 +35,7 @@ add_subdirectory(multidomain)
|
||||
add_subdirectory(nurbs)
|
||||
add_subdirectory(parelag)
|
||||
add_subdirectory(performance)
|
||||
add_subdirectory(plasma)
|
||||
add_subdirectory(shifted)
|
||||
add_subdirectory(solvers)
|
||||
add_subdirectory(spde)
|
||||
|
||||
@@ -0,0 +1,25 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
if (MFEM_USE_MPI)
|
||||
list(APPEND PLASMA_COMMON_SOURCES)
|
||||
|
||||
list(APPEND PLASMA_COMMON_HEADERS
|
||||
plasma.hpp)
|
||||
|
||||
convert_filenames_to_full_paths(PLASMA_COMMON_SOURCES)
|
||||
convert_filenames_to_full_paths(PLASMA_COMMON_HEADERS)
|
||||
|
||||
set(PLASMA_COMMON_FILES
|
||||
EXTRA_SOURCES ${PLASMA_COMMON_SOURCES}
|
||||
EXTRA_HEADERS ${PLASMA_COMMON_HEADERS})
|
||||
|
||||
endif()
|
||||
@@ -0,0 +1,85 @@
|
||||
# Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
# at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
# LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
#
|
||||
# This file is part of the MFEM library. For more information and source code
|
||||
# availability visit https://mfem.org.
|
||||
#
|
||||
# MFEM is free software; you can redistribute it and/or modify it under the
|
||||
# terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
# CONTRIBUTING.md for details.
|
||||
|
||||
# Use the MFEM build directory
|
||||
MFEM_DIR ?= ../..
|
||||
MFEM_BUILD_DIR ?= ../..
|
||||
SRC = $(if $(MFEM_DIR:../..=),$(MFEM_DIR)/miniapps/plasma/,)
|
||||
CONFIG_MK = $(MFEM_BUILD_DIR)/config/config.mk
|
||||
# Use the MFEM install directory
|
||||
# MFEM_INSTALL_DIR = ../../mfem
|
||||
# CONFIG_MK = $(MFEM_INSTALL_DIR)/share/mfem/config.mk
|
||||
|
||||
MFEM_LIB_FILE = mfem_is_not_built
|
||||
-include $(CONFIG_MK)
|
||||
|
||||
SEQ_MINIAPPS =
|
||||
PAR_MINIAPPS =
|
||||
ifeq ($(MFEM_USE_MPI),NO)
|
||||
MINIAPPS = $(SEQ_MINIAPPS)
|
||||
else
|
||||
MINIAPPS = $(PAR_MINIAPPS) $(SEQ_MINIAPPS)
|
||||
endif
|
||||
|
||||
.SUFFIXES:
|
||||
.SUFFIXES: .o .cpp .mk
|
||||
.PHONY: all lib-common clean clean-build clean-exec
|
||||
.PRECIOUS: %.o
|
||||
|
||||
COMMON_LIB = -L$(MFEM_BUILD_DIR)/miniapps/common -lmfem-common
|
||||
|
||||
# If MFEM_SHARED is set, add the ../common rpath
|
||||
COMMON_LIB += $(if $(MFEM_SHARED:YES=),,\
|
||||
$(if $(MFEM_USE_CUDA:YES=),$(CXX_XLINKER),$(CUDA_XLINKER))-rpath,$(abspath\
|
||||
$(MFEM_BUILD_DIR)/miniapps/common))
|
||||
|
||||
COMMON_O=
|
||||
|
||||
# Remove built-in rules
|
||||
%: %.cpp
|
||||
%.o: %.cpp
|
||||
|
||||
all: $(MINIAPPS)
|
||||
|
||||
# Rules for building the miniapps
|
||||
%: $(SRC)%.cpp $(COMMON_O) $(MFEM_LIB_FILE) $(CONFIG_MK) | lib-common
|
||||
$(MFEM_CXX) $(MFEM_LINK_FLAGS) $< -o $@ $(COMMON_O) $(COMMON_LIB) \
|
||||
$(MFEM_LIBS)
|
||||
|
||||
# Rules for compiling miniapp dependencies
|
||||
$(COMMON_O) $(addsuffix _solver.o,$(MINIAPPS)): \
|
||||
%.o: $(SRC)%.cpp $(SRC)%.hpp $(CONFIG_MK)
|
||||
$(MFEM_CXX) $(MFEM_FLAGS) -c $(<) -o $(@)
|
||||
|
||||
# Rule for building lib-common
|
||||
lib-common:
|
||||
$(MAKE) -C $(MFEM_BUILD_DIR)/miniapps/common
|
||||
|
||||
MFEM_TESTS = MINIAPPS
|
||||
include $(MFEM_TEST_MK)
|
||||
|
||||
# Testing: Specific execution options
|
||||
RUN_MPI = $(MFEM_MPIEXEC) $(MFEM_MPIEXEC_NP) $(MFEM_MPI_NP)
|
||||
|
||||
# Testing: "test" target and mfem-test* variables are defined in config/test.mk
|
||||
|
||||
# Generate an error message if the MFEM library is not built and exit
|
||||
$(MFEM_LIB_FILE):
|
||||
$(error The MFEM library is not built)
|
||||
|
||||
clean: clean-build clean-exec
|
||||
|
||||
clean-build:
|
||||
rm -f *.o *~ $(SEQ_MINIAPPS) $(PAR_MINIAPPS)
|
||||
rm -rf *.dSYM *.TVD.*breakpoints
|
||||
|
||||
clean-exec:
|
||||
|
||||
@@ -0,0 +1,62 @@
|
||||
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
|
||||
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
|
||||
// LICENSE and NOTICE for details. LLNL-CODE-806117.
|
||||
//
|
||||
// This file is part of the MFEM library. For more information and source code
|
||||
// availability visit https://mfem.org.
|
||||
//
|
||||
// MFEM is free software; you can redistribute it and/or modify it under the
|
||||
// terms of the BSD-3 license. We welcome feedback and contributions, see file
|
||||
// CONTRIBUTING.md for details.
|
||||
|
||||
#ifndef MFEM_PLASMA_HPP
|
||||
#define MFEM_PLASMA_HPP
|
||||
|
||||
#include <cmath>
|
||||
#include <complex>
|
||||
|
||||
namespace mfem
|
||||
{
|
||||
|
||||
namespace plasma
|
||||
{
|
||||
|
||||
// Physical Constants
|
||||
|
||||
// Permittivity of Free Space (units F/m)
|
||||
static const real_t epsilon0_ = 8.8541878176e-12;
|
||||
|
||||
// Permeability of Free Space (units H/m)
|
||||
static const real_t mu0_ = 4.0e-7 * M_PI;
|
||||
|
||||
// Speed of light in Free Space (units m/s)
|
||||
static const real_t c0_ = 1.0 / sqrt(epsilon0_ * mu0_);
|
||||
|
||||
// Impedance of Free Space (units Ohm)
|
||||
static const real_t Z0_ = sqrt(mu0_ / epsilon0_);
|
||||
|
||||
static const real_t q_ = 1.602176634e-19; // Elementary charge in coulombs
|
||||
static const real_t eV_ = 1.602176634e-19; // 1 eV in Joules
|
||||
static const real_t amu_ = 1.660539040e-27; // Atomic mass unit in kilograms
|
||||
static const real_t me_kg_ = 9.10938356e-31; // Mass of electron in kilograms
|
||||
static const real_t me_u_ = 5.4857990907e-4; // Mass of electron in a.m.u
|
||||
|
||||
/**
|
||||
Returns the cyclotron frequency in radians/second
|
||||
m is the mass in a.m.u
|
||||
q is the charge in units of elementary electric charge
|
||||
B is the magnetic field magnitude in tesla
|
||||
*/
|
||||
inline real_t cyclotronFrequency(real_t B, real_t m, real_t q)
|
||||
{
|
||||
return fabs(q * q_ * B / (m * amu_));
|
||||
}
|
||||
|
||||
typedef std::complex<real_t> complex_t;
|
||||
|
||||
} // namespace plasma
|
||||
|
||||
} // namespace mfem
|
||||
|
||||
#endif // MFEM_PLASMA_HPP
|
||||
|
||||
@@ -295,8 +295,13 @@ namespace Catch {
|
||||
// Otherwise all supported compilers support COUNTER macro,
|
||||
// but user still might want to turn it off
|
||||
#if ( !defined(__JETBRAINS_IDE__) || __JETBRAINS_IDE__ >= 20170300L )
|
||||
#if ( !(defined(__clang__) && __clang_major__ >= 22 ) )
|
||||
// don't use __COUNTER__ if compiling with clang 22+ to avoid compiler warning
|
||||
// https://github.com/llvm/llvm-project/pull/162662
|
||||
// TODO: can enable if building with C2y
|
||||
#define CATCH_INTERNAL_CONFIG_COUNTER
|
||||
#endif
|
||||
#endif
|
||||
|
||||
////////////////////////////////////////////////////////////////////////////////
|
||||
|
||||
|
||||
@@ -281,8 +281,10 @@ TEST_CASE("Nedelec Segment Finite Element",
|
||||
REQUIRE( fe.GetRangeType() == (int) FiniteElement::VECTOR );
|
||||
REQUIRE( fe.GetMapType() == (int) FiniteElement::H_CURL );
|
||||
REQUIRE( fe.GetDerivType() == (int) FiniteElement::NONE );
|
||||
REQUIRE( fe.GetDerivRangeType() == (int) FiniteElement::SCALAR );
|
||||
REQUIRE( fe.GetDerivMapType() == (int) FiniteElement::INTEGRAL);
|
||||
REQUIRE( fe.GetDerivRangeType() ==
|
||||
(int) FiniteElement::UNKNOWN_RANGE_TYPE);
|
||||
REQUIRE( fe.GetDerivMapType() ==
|
||||
(int) FiniteElement::UNKNOWN_MAP_TYPE);
|
||||
}
|
||||
}
|
||||
SECTION("Sizes for p = " + std::to_string(p))
|
||||
|
||||
Reference in New Issue
Block a user