Compare commits

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Author SHA1 Message Date
Jan Nikl 4667cf9d39 Silenced tee. 2026-03-16 13:30:20 -07:00
Jan Nikl 1e6c8ecf56 Removed compilation checks. 2026-03-16 12:54:15 -07:00
Jan Nikl 95c844f519 Replaced tee -p by trap. 2026-03-16 12:30:43 -07:00
Jan Nikl b5b0f2382f Removed unnecessary move of the server. 2026-03-16 12:03:04 -07:00
Jan Nikl bbdc39d605 Added error when run on a non-POSIX platform. 2026-03-16 12:01:22 -07:00
Jan Nikl 7fed49c38b Added visualization server to ex1p. 2026-03-16 10:59:15 -07:00
Tzanio Kolev fa89c5e98c Merge pull request #4856 from mfem/phys-range-dim
Range and curl dimension in physical space
2026-03-13 07:44:40 -07:00
Tzanio Kolev 0980bda63b Merge pull request #5215 from balay/barry/update-for-petsc-v3.25-PetscCtx
Update to change in PETSc API (in v3.25) for PetscCtx and PetscCtxRt
2026-03-13 07:44:06 -07:00
Will Pazner 82abd48bba Merge pull request #5080 from mfem/cmake-config
CMake config.mk for CUDA and HIP
2026-03-11 12:18:25 -04:00
Tzanio Kolev d4374a9d5f Merge branch 'master' into cmake-config 2026-03-10 11:08:23 -07:00
Tzanio Kolev dcd3a25730 Merge branch 'master' into barry/update-for-petsc-v3.25-PetscCtx 2026-03-10 11:01:46 -07:00
Andrew Ho 0f99528c62 Merge branch 'master' into phys-range-dim 2026-03-05 12:45:42 -08:00
Veselin Dobrev ddfd74e899 Merge pull request #5255 from mfem/catch-tests
fix clang compiler warning for __COUNTER__
2026-03-05 12:39:29 -08:00
Mark L. Stowell 0248720eeb Merge branch 'master' into phys-range-dim 2026-03-05 09:35:14 -08:00
Andrew Ho feded39641 Merge branch 'master' into catch-tests 2026-03-05 09:28:31 -08:00
Tzanio Kolev 09128b9a5d Merge pull request #5240 from mfem/bugfix/chapan39/use-mfem-abort-kernel-in-device
dfem integrate: use mfem abort kernel in device code
2026-03-04 09:55:23 -08:00
Tzanio Kolev 68383b462b Merge pull request #5231 from mfem/plasma-dir-dev
Plasma Miniapp Directory
2026-03-04 09:54:48 -08:00
Tzanio Kolev 24d5609585 Merge pull request #5212 from mfem/najlkin/fix-cmplx-assign
[BUG] Complex grid function copy assignment
2026-03-04 09:54:25 -08:00
Andrew Ho 670a3f9a45 comment on why TPL_LIBRARIES is reversed twice 2026-03-03 11:43:02 -08:00
Andrew Ho 7baae02d65 Merge remote-tracking branch 'base/cmake-config' into cmake-config 2026-03-02 16:31:18 -08:00
Andrew Ho 728a0f313b move cudart to MFEM_EXT_LIBS 2026-03-02 16:30:31 -08:00
Andrew Ho 1bb624e2a8 fix clang compiler warning for __COUNTER__ 2026-03-02 14:05:28 -08:00
Tzanio Kolev ee7ccd6464 Merge branch 'master' into plasma-dir-dev 2026-03-02 11:56:51 -08:00
Stowell, Mark L. a3ae5a6f01 Changing copyright date to pass CI checks 2026-03-02 09:22:29 -08:00
Tzanio Kolev 5ce6e90ceb Merge pull request #5253 from mfem/bugfix-nurbs-orientation
NURBS orientation bug fix
2026-03-01 11:46:34 -08:00
Tzanio Kolev 03ba184adb Merge pull request #4882 from mfem/debug-mem-silent
Add option to run debug memory backend without issuing errors
2026-03-01 11:46:15 -08:00
Tzanio Kolev cfa87477da Merge pull request #5248 from lindsayad/dont-do-math-with-enums
Don't do arithmetic with enums
2026-03-01 11:45:47 -08:00
Andrew HoandNuno Nobre 9243d00549 Update config/cmake/modules/MfemCmakeUtilities.cmake
Co-authored-by: Nuno Nobre <nuno.nobre@stfc.ac.uk>
2026-02-28 14:53:22 -08:00
Andrew HoandNuno Nobre 4fe3db5a5f Update config/cmake/modules/MfemCmakeUtilities.cmake
Co-authored-by: Nuno Nobre <nuno.nobre@stfc.ac.uk>
2026-02-28 14:53:15 -08:00
Andrew Ho 55bb710cba fixed wrong dir being marked as system 2026-02-27 14:02:24 -08:00
dylan-copeland 939932bc68 Merge branch 'master' of github.com:mfem/mfem into bugfix-nurbs-orientation 2026-02-27 13:59:37 -08:00
Tzanio Kolev d3ae34710c Merge pull request #5195 from mfem/flip-index
Index sign functions
2026-02-27 13:32:22 -08:00
Dylan Copeland 9b652996b2 Remove an unnecessary assertion. 2026-02-27 11:48:01 -08:00
Dylan Copeland 5cfbbe5fad Bug fix for NURBS orientation, when the same knotvector index is used on all edges of some patches. 2026-02-27 11:24:36 -08:00
Andrew HoandNuno Nobre 7ad6939454 Update config/cmake/modules/MfemCmakeUtilities.cmake
Co-authored-by: Nuno Nobre <nuno.nobre@stfc.ac.uk>
2026-02-27 07:06:16 -08:00
60cc94e5a1 Update to use PetscCtxRt from (3,25,0), and cleanup duplicate code
Co-authored-by: Nuno Nobre <nuno.nobre@stfc.ac.uk>
Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2026-02-26 11:57:27 -06:00
Satish Balay 9122ac1839 update KSPMonitorFn usage for < (3,24,0) 2026-02-26 11:57:22 -06:00
Satish Balay 864186117d update PetscCtxDestroyFn usage for < (3,23,0) 2026-02-26 11:56:15 -06:00
Ketan Mittal 35de169fd0 Merge branch 'master' into plasma-dir-dev 2026-02-26 09:42:51 -08:00
Tzanio Kolev 71909cd5e3 Merge pull request #5203 from mfem/bugfix/unit-test-cout
Changing std::cout to mfem::out in unit test
2026-02-26 05:50:05 -08:00
Alex Lindsay a5a3169064 Don't do arithmetic with enums
Else with gcc 13.3 with `-std=c++20` I get warnings
2026-02-25 13:35:10 -07:00
Andrew Ho 0a3184ab31 MFEM_EXPORT_GPU_CONFIG should export CPU config.mk when set to off 2026-02-24 11:56:38 -08:00
Dylan Copeland afded067a7 Replace absdof. 2026-02-24 11:17:54 -08:00
Mark L. Stowell a438e09caf Merge branch 'master' into plasma-dir-dev 2026-02-24 11:02:04 -08:00
Alex Tyler Chapman ea03a86df2 Merge branch 'master' into bugfix/chapan39/use-mfem-abort-kernel-in-device 2026-02-24 10:32:30 -08:00
chapman39 6ef7a9e6fb 80 chars/ line 2026-02-24 10:32:18 -08:00
John Camier 629e93afd9 Merge branch 'master' into debug-mem-silent 2026-02-24 09:20:59 -08:00
Tzanio Kolev 3e277808a9 Merge pull request #5210 from mfem/hughcars/array-move-assignment-bugfix
Fix Array non-owning move assignment
2026-02-24 08:41:48 -08:00
Tzanio Kolev 864fb1ce9e Merge pull request #5217 from mfem/quadrature-function-fix
Fix a bug in `QuadratureFunction::GetValues` that returns a `DenseMatrix` view
2026-02-24 08:40:53 -08:00
Tzanio Kolev ac7415cc69 Merge branch 'master' into bugfix/unit-test-cout 2026-02-24 08:38:11 -08:00
Veselin Dobrev 38030d4395 Merge pull request #5222 from mfem/bugfix/chapman39/rm-return-from-omp
Remove return from openmp section
2026-02-24 08:18:53 -08:00
Alex Tyler Chapman 2c96dc6a1f Merge branch 'master' into bugfix/chapman39/rm-return-from-omp 2026-02-23 11:53:58 -08:00
Alex Tyler Chapman db7dd30d32 Merge branch 'master' into bugfix/chapan39/use-mfem-abort-kernel-in-device 2026-02-23 09:33:23 -08:00
John Camier ecbc7bf8c2 Merge branch 'master' into bugfix/unit-test-cout 2026-02-23 08:00:52 -08:00
John Camier 5b5a21edac Merge branch 'master' into debug-mem-silent 2026-02-22 12:28:39 -08:00
Tzanio Kolev 1f84ba036e Merge pull request #5179 from izaid/pfes
Fixed NULL pointer segfault in GetSurfaceFittingErrors
2026-02-21 12:52:33 -08:00
Tzanio Kolev 76d0312309 Merge branch 'master' into hughcars/array-move-assignment-bugfix 2026-02-21 12:52:11 -08:00
Tzanio Kolev c7ed339260 Merge pull request #5228 from mfem/mesh-3d-part-fix
Improve 3d mesh partitions
2026-02-21 12:43:49 -08:00
Tzanio Kolev f1b3a33fb2 Merge pull request #5234 from mfem/few-small-fixes
A few small fixes
2026-02-21 12:43:02 -08:00
chapman39 a1fe3a19b1 dfem integrate: use mfem abort kernel in device code 2026-02-19 17:45:11 -08:00
Satish Balay 213ccd7a4e rework PetscContainerSetCtxDestroy() usage for < (3,23,0) 2026-02-18 15:51:42 -06:00
Veselin Dobrev e3dedbbd5b Increase a relative tolerance due to failures on some machines 2026-02-18 10:27:44 -08:00
John Camier 261f3805b8 Merge branch 'master' into debug-mem-silent 2026-02-17 10:59:40 -08:00
John Camier b386b2d6b6 Merge branch 'master' into bugfix/chapman39/rm-return-from-omp 2026-02-17 08:28:34 -08:00
Tzanio Kolev 6e98055eb7 Merge branch 'master' into quadrature-function-fix 2026-02-17 08:28:12 -08:00
Tzanio Kolev 2b14134496 Merge branch 'master' into najlkin/fix-cmplx-assign 2026-02-17 08:27:01 -08:00
Tzanio Kolev 5abd44f212 Merge pull request #5227 from mfem/add-constexpr
Add if constexpr to Kernel Specializations
2026-02-17 08:25:11 -08:00
Veselin Dobrev 75012728db Formatting: re-wrap comment to 80 chars/line. 2026-02-14 13:10:30 -08:00
Dylan Copeland 1f094244f8 Typo 2026-02-13 10:37:58 -08:00
Dylan Copeland cc16ddadbf Merge branch 'master' of github.com:mfem/mfem into flip-index 2026-02-13 10:35:32 -08:00
Veselin Dobrev 8acd5cd3a2 Fix a size bug in thread-safe mode in H1_TriangleElement::CalcHessian.
Fix use-after-delete bug in nurbs_ex10p.cpp.

Use relative tolerance in the "Collocated Derivative Kernels" unit test
to resolve failures in some setups with the original absolute tolerance.
2026-02-13 10:29:22 -08:00
chapman39 1f5bc1c3d8 wording 2026-02-13 10:03:00 -08:00
chapman39 3588d47ec1 Merge remote-tracking branch 'origin/master' into bugfix/chapman39/rm-return-from-omp 2026-02-13 09:59:31 -08:00
Andrew Ho e7f5996bdf fix warnings with some compilers 2026-02-13 09:28:16 -08:00
Tzanio Kolev 560ad1b5a3 Merge pull request #5157 from mfem/plbound-extremum
Estimate function minimum/maximum using recursion + piecewise linear bounds
2026-02-13 07:08:57 -08:00
Alex Tyler Chapman f0fe5b0ec0 Merge branch 'master' into bugfix/chapman39/rm-return-from-omp 2026-02-11 15:14:48 -08:00
chapman39 a92983051a style 2026-02-11 15:14:23 -08:00
Stowell, Mark L. 794a5fbfc2 Adding miniapps/plasma subdirectory to build system 2026-02-11 11:56:06 -08:00
Stowell, Mark L. 746a62f017 Adding plasma miniapp directory 2026-02-11 11:53:01 -08:00
Will Pazner 37843b050c Add one more 'if constexpr' 2026-02-11 11:33:51 -08:00
camierjs 436714f5ef Revert unused included header 2026-02-11 11:18:02 -08:00
camierjs 1ceef4f786 Add few missing Kernel() constexpr 2026-02-11 11:11:35 -08:00
Vladimir Z Tomov 6bb6745c0e improve 3d partitions 2026-02-10 16:23:38 -08:00
Mittal, Ketan 60f47c287d CHANGELOG 2026-02-10 14:28:17 -08:00
Mittal, Ketan 164ee942c8 Merge branch 'plbound-extremum' of https://github.com/mfem/mfem into plbound-extremum 2026-02-10 10:59:44 -08:00
Mittal, Ketan 16c4fbdd29 reviewer comments 2026-02-10 10:59:33 -08:00
Ketan Mittal e28093274b Merge branch 'master' into plbound-extremum 2026-02-09 19:06:18 -08:00
Andrew Ho 87dd19e6c0 more constexprs 2026-02-09 17:35:17 -08:00
Andrew Ho 678f53c306 use constexpr to prevent unintended kernel Pinstantiations 2026-02-09 17:17:26 -08:00
Tzanio Kolev 1861b80627 Merge pull request #5132 from farscape-project/superlu
Add toggle for SuperLU_DIST device offload
2026-02-07 13:14:15 -08:00
Tzanio Kolev a8c0c856f6 Merge pull request #5190 from mfem/launch-bounds
[GPU] Launch bounds
2026-02-07 13:14:00 -08:00
chapman39 32fb4bf244 remove return from openmp section 2026-02-05 14:56:40 -08:00
camierjs dbb86c87c2 Revert last MFEM_VERIFY 2026-02-04 16:23:07 -08:00
camierjs e866ede0c4 Re-enable GPU Wrap2D runtime verifications and revert EAMassAssemble static qualifiers 2026-02-04 16:05:57 -08:00
Veselin Dobrev 2d021685de Fix a bug in QuadratureFunction::GetValues when getting a reference to
the data for one mesh element as a DenseMatrix.

Added new methods:
- Array<T>::MakeRef(Memory<T> &base, int offset, int size_)
- DenseMatrix::MakeRef(Memory<real_t> &base, int offset, int h, int w)
2026-02-02 08:42:58 -08:00
camierjs c498d9c759 Merge branch 'master' into launch-bounds 2026-02-01 20:41:26 -08:00
camierjs 2896b2fb02 Forcing EAMassAssemble internal linkage to avoid ODR issues with gcc + nvcc 2026-02-01 20:41:12 -08:00
Tzanio Kolev 8efb9483bc Merge pull request #5183 from mfem/fix-5180
Improve HYPRE solver documentation
2026-02-01 11:57:26 -08:00
camierjs 5507772f37 HIP defaults to MFEM_HIP_BLOCKS 2026-01-31 12:52:17 -08:00
Hugh Carson d6ea262498 Address PR feedback
- Hoist src deletion
- Remove unneeded explicit cast given src is named
2026-01-30 14:01:59 -05:00
Tzanio Kolev 1b20704b24 Merge branch 'master' into launch-bounds 2026-01-30 09:43:05 -08:00
Tzanio Kolev 55bafba69a Merge branch 'master' into fix-5180 2026-01-30 09:40:40 -08:00
Tzanio Kolev 3a29fda4cd Merge pull request #5209 from mfem/particlevec-findpts-interface
Remove FindPointsGSLIB::Interpolate overload
2026-01-30 09:40:24 -08:00
Andrew Ho 26e9057f02 revert change, updated comment to why libdl gets special treatment 2026-01-30 07:27:04 -08:00
Dylan Copeland 6b147fd9ff Merge branch 'master' of github.com:mfem/mfem into flip-index 2026-01-29 15:45:52 -08:00
Andrew Ho c53bce08f1 missed a few periods 2026-01-29 12:52:26 -08:00
Andrew Ho afadd435f5 review comments 2026-01-29 12:50:04 -08:00
Andrew Ho 36d7629b26 residual vector requires hypre >= 2.15.0 2026-01-29 12:41:53 -08:00
Andrew Ho 8f32e6620b updated changelog, removed unused declaration 2026-01-29 08:15:34 -08:00
Tzanio Kolev 766760659d Merge branch 'master' into fix-5180 2026-01-28 16:39:11 -08:00
Jan Nikl 16dfa11f27 Minor docstring correction. 2026-01-28 15:45:20 -08:00
Jan Nikl c7774e3c1c Fixed complex grid function copy assignment. 2026-01-28 15:34:55 -08:00
John Camier 2c0419a9a8 Merge branch 'master' into launch-bounds 2026-01-28 11:36:48 -08:00
Tzanio Kolev 9185762478 Merge pull request #4974 from mfem/hybridization-gpu-amr
Hybridization on GPU with nonconforming AMR
2026-01-28 09:36:41 -08:00
Tzanio Kolev 2c41e483fe Merge pull request #5194 from mfem/det1d-surface
Surface 1D determinant [det1d-surface]
2026-01-28 09:36:27 -08:00
Tzanio Kolev 78a4a77ed7 Merge pull request #5110 from mfem/zeroel-lor-ea-fix
Zero element fix for device HO <-> LOR transfers [zeroel-lor-ea-fix]
2026-01-28 09:33:46 -08:00
Tzanio Kolev ea4aceeffc Merge pull request #5134 from mfem/add_trivial_hessian
Fix NURBS hessians
2026-01-28 09:33:06 -08:00
Will Pazner 1f8af4538c Merge pull request #5155 from mfem/leak-and-omp-critical-fix
Fix issues with `DofToQuad` methods
2026-01-27 11:37:35 -08:00
Hugh Carson a0981cb363 Refactor test for showing equivalency of copy and move assignment 2026-01-27 14:15:08 -05:00
Hugh Carson 894de992da Move assignment of non-owned arrays must fallback to copy assignment 2026-01-27 14:01:23 -05:00
John Camier ca1bbaa7ed Merge branch 'master' into launch-bounds 2026-01-27 09:46:35 -08:00
Mittal, Ketan 2ce98bec12 documentation 2026-01-26 20:22:43 -08:00
Mittal, Ketan 3db24b1b40 remove interpolate overload with ParticleVector 2026-01-26 20:19:55 -08:00
Tzanio Kolev 0e61a94b5f Merge pull request #5161 from adam-sim-dev/mpi_c_bool
Use MPI_C_BOOL for PETSc>=3.24.0
2026-01-26 08:17:25 -08:00
Tzanio Kolev 194f2a56b7 Merge pull request #5067 from mfem/lorentz-particleset
Lorentz Miniapp using `ParticleSet`
2026-01-26 08:16:19 -08:00
Tzanio Kolev efe05b9b1a Merge pull request #5206 from mfem/astyle-bin-dev
Moving definition of ASTYLE_BIN
2026-01-26 07:59:59 -08:00
Tzanio Kolev 91600c12eb Merge branch 'master' into zeroel-lor-ea-fix 2026-01-25 09:41:10 -08:00
Tzanio Kolev 35aef0486f Merge branch 'master' into det1d-surface 2026-01-25 09:41:04 -08:00
Tzanio Kolev df6d58da30 Merge branch 'master' into hybridization-gpu-amr 2026-01-24 11:45:16 -08:00
Tzanio Kolev 942249395b Merge branch 'master' into debug-mem-silent 2026-01-24 11:40:50 -08:00
Stowell, Mark L. 500e952d5c Moving definition of ASTYLE_BIN 2026-01-23 12:39:58 -08:00
Tzanio Kolev 1c56fe47c4 Merge branch 'master' into lorentz-particleset 2026-01-23 10:08:42 -08:00
Tzanio Kolev bbd33cfcc1 Merge branch 'master' into add_trivial_hessian 2026-01-23 10:02:02 -08:00
Ido Akkerman 5083a29ccd Merge branch 'add_trivial_hessian' of github.com:mfem/mfem into add_trivial_hessian 2026-01-23 10:25:33 +01:00
Ido Akkerman 6e063a5d23 Comment on tolerance 2026-01-23 10:24:57 +01:00
Ido Akkerman 87b11c227b Other compare calculation and check 2026-01-23 10:12:45 +01:00
Stowell, Mark L. a3f6d5b971 Changing std::cout to mfem::out 2026-01-22 15:37:51 -08:00
Andrew Ho 194f3d8140 suggestions from Veselin 2026-01-21 11:45:20 -08:00
John Camier db10fd292a Merge branch 'master' into launch-bounds 2026-01-21 11:37:08 -08:00
Ketan Mittal 5546250963 Merge branch 'master' into plbound-extremum 2026-01-21 11:00:02 -08:00
Mark L. Stowell 3f9b44a9cd Merge branch 'master' into phys-range-dim 2026-01-21 10:38:56 -08:00
Mittal, Ketan 072147289b update CHANGELOG 2026-01-21 09:26:20 -08:00
John Camier 5b065ad7f2 Merge branch 'master' into debug-mem-silent 2026-01-20 17:59:07 -08:00
Mittal, Ketan cde2b05366 documentation 2026-01-20 17:29:09 -08:00
Mittal, Ketan e8d1fc9b60 wordsmithing 2026-01-20 17:26:56 -08:00
Mittal, Ketan 60771f2f27 minor 2026-01-20 15:45:43 -08:00
Mittal, Ketan dbe2c6862c fix distribution construction for negative std dev 2026-01-20 15:42:02 -08:00
Mittal, Ketan 35442a2004 dont use normal distribution if std dev is negative 2026-01-20 15:33:22 -08:00
Mittal, Ketan 1a4c7eb027 minor change to sample run 2026-01-20 15:28:51 -08:00
Mittal, Ketan 60a9893d52 minor 2026-01-20 15:25:06 -08:00
Andrew Ho 8c2ffb9d26 added Set/GetUseTwoNorm 2026-01-20 13:25:08 -08:00
Mittal, Ketan 08f41f6450 Merge branch 'lorentz-particleset' of https://github.com/mfem/mfem into lorentz-particleset 2026-01-20 12:24:15 -08:00
Mittal, Ketan d184921e09 remove unused input argument 2026-01-20 12:24:07 -08:00
Ketan MittalandJan Nikl 57e26f75b0 Apply suggestions from code review
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-01-20 12:22:49 -08:00
Mittal, Ketan 2eaf46c80d change particle momentum initialization 2026-01-20 10:40:41 -08:00
Mittal, Ketan 48a2648ec5 Merge branch 'lorentz-particleset' of https://github.com/mfem/mfem into lorentz-particleset 2026-01-20 10:05:58 -08:00
Mittal, Ketan bfffb837d3 add option to specify output ordering in FindPointsGSLIB::Interpolate 2026-01-20 10:05:48 -08:00
John Camier 2737feaa2a Merge branch 'master' into launch-bounds 2026-01-19 19:09:42 -08:00
Ketan Mittal 988cc5b18d Merge branch 'master' into lorentz-particleset 2026-01-19 19:03:36 -08:00
Mittal, Ketan ae49f4be68 make style 2026-01-18 15:47:58 -08:00
Mittal, Ketan c51d05f1e1 Merge branch 'lorentz-particleset' of https://github.com/mfem/mfem into lorentz-particleset 2026-01-18 15:47:40 -08:00
Mittal, Ketan c5ef67adcf address reviewer comments 2026-01-18 15:47:29 -08:00
Ketan Mittal c5f78ea58a Merge branch 'master' into lorentz-particleset 2026-01-18 15:44:11 -08:00
Ketan MittalandJan Nikl d066b11e18 Update miniapps/common/particles_extras.hpp
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-01-18 15:44:01 -08:00
Ketan MittalandJan Nikl cb85a7b804 Apply suggestions from code review
Co-authored-by: Jan Nikl <nikl1@llnl.gov>
2026-01-18 15:36:24 -08:00
John Camier 3dcba10659 Merge branch 'master' into launch-bounds 2026-01-17 07:58:32 -08:00
Andrew Ho 4c6be0bc6f default p=2 to match hypre 2026-01-16 14:21:14 -08:00
Ketan Mittal 7f4d7b8f4e Merge branch 'master' into plbound-extremum 2026-01-16 12:54:56 -08:00
Ketan Mittal 4d1cd791f3 Merge branch 'master' into lorentz-particleset 2026-01-15 14:27:26 -08:00
Mittal, Ketan 6529372830 reviewer comments 2026-01-15 13:10:47 -08:00
Eric B. Chin cb2d4bde47 update an assert 2026-01-14 16:10:59 -08:00
Mittal, Ketan d66d799387 minor 2026-01-14 15:25:11 -08:00
camierjs ca43ab0c61 Fix SmemPAVectorDiffusionApply2D 2026-01-14 15:01:28 -08:00
camierjs 1c60d5946b Fix vector diffusion bounds 2026-01-14 14:57:07 -08:00
camierjs c9768e34bc Add missing specializations and vector bounds 2026-01-14 14:34:54 -08:00
Mittal, Ketan 51f205b273 reviewer comments 2026-01-14 14:14:31 -08:00
Tzanio Kolev 2352f7be6b Fix formatting in example command line usage 2026-01-14 13:55:38 -08:00
Dylan Copeland 0161ad9d92 Minor simplifications. 2026-01-14 12:22:47 -08:00
Dylan Copeland 3589479481 Merge branch 'master' of github.com:mfem/mfem into flip-index 2026-01-14 12:10:30 -08:00
Dylan Copeland e9acfeccda Using new sign functions. 2026-01-14 12:10:07 -08:00
Ido Akkerman 244db1b571 TRying to fix CI issue 2026-01-14 13:35:53 +01:00
Ido Akkerman 75795809ef Fix CI issues 2026-01-14 13:17:22 +01:00
Ido Akkerman 825a5a7f2e Typos and other fixes 2026-01-14 11:44:52 +01:00
Eric B. Chin 4ed8f16325 bugfix and formatting 2026-01-13 21:50:00 -08:00
Eric B. Chin ec896295d6 initial implementation 2026-01-13 17:12:24 -08:00
Ketan Mittal ad7cf12cd5 Merge branch 'master' into plbound-extremum 2026-01-13 12:24:55 -08:00
camierjs 2375135f9a Add the launch bounds for DGMassCGIteration 2026-01-13 11:46:46 -08:00
camierjs a4800f42dd Merge branch 'master' into launch-bounds 2026-01-13 11:45:11 -08:00
John Camier caa973d6a0 Merge branch 'master' into cmake-config 2026-01-13 08:13:47 -08:00
Ido Akkerman 1e48c7e6d0 Add other elements to test case 2026-01-13 12:29:07 +01:00
Ido Akkerman 88456472dc Clean unit test 2026-01-13 12:16:44 +01:00
Ido Akkerman 7040fe65da Add compare-dc to ignore file 2026-01-13 12:16:22 +01:00
camierjs 6df83bd190 Merge branch 'gpu-bounds' into launch-bounds 2026-01-12 16:11:43 -08:00
camierjs 10d975d0e7 Remove unused code 2026-01-12 15:54:22 -08:00
camierjs bae772c6f1 CEED bench options 2026-01-12 10:25:01 -08:00
Ketan Mittal abdb023ae3 Merge branch 'master' into plbound-extremum 2026-01-12 10:12:14 -08:00
camierjs 79e0bc1ab2 CEED bench options 2026-01-12 09:08:29 -08:00
Ido Akkerman 847cf4a646 Merge branch 'add_trivial_hessian' of github.com:mfem/mfem into add_trivial_hessian 2026-01-12 18:04:08 +01:00
Ido Akkerman bdb3f39ffa Add extra hessian check 2026-01-12 18:03:09 +01:00
Ido Akkerman 803e2bd5c9 Add tolerance to file comparison 2026-01-12 18:02:32 +01:00
Ido Akkerman 2f7ba402dd Add miniapp tool to compute difference 2026-01-12 16:12:47 +01:00
Ido Akkerman 26374d9be8 Add meshes for distortion test 2026-01-12 16:08:38 +01:00
Ido Akkerman 7ae7690846 Fix more numbering issues 2026-01-12 16:06:16 +01:00
camierjs c21c6cb00b Add CEED benches order 7 2026-01-11 19:50:28 -08:00
camierjs 1bd9dd2e5d CUDA CEED benches 2026-01-11 18:10:28 -08:00
Mittal, Ketan bc0ec2e717 add another sample run 2026-01-11 12:09:01 -08:00
camierjs 31409edb7f Add CUDA MAX_THREADS_PER_BLOCK logic 2026-01-11 11:50:44 -08:00
camierjs ed66371ebd Cleanup CEED bench 2026-01-11 11:34:00 -08:00
camierjs 5727331966 Cleanup CEED bench 2026-01-11 11:24:06 -08:00
camierjs 40039a6897 Cleanup CEED benchmarks 2026-01-10 10:58:50 -08:00
camierjs a05d4e1852 Bounds for HIP 2026-01-09 14:49:40 -08:00
camierjs 29c2442e47 tests/benchmarks/bench_ceed 2026-01-09 12:06:35 -08:00
Mittal, Ketan fcb78b81ec minor 2026-01-08 22:19:49 -08:00
Mittal, Ketan 92ab53dec6 Merge branch 'lorentz-particleset' of https://github.com/mfem/mfem into lorentz-particleset 2026-01-08 22:17:46 -08:00
Mittal, Ketan c2475e43fd fix nparticles used in ParticleSet constructor 2026-01-08 22:17:21 -08:00
izaid 5cd3ec521b applied astyle 2026-01-08 23:19:16 +00:00
Alex Tyler Chapman 232853214d Merge branch 'master' into zeroel-lor-ea-fix 2026-01-08 14:34:12 -08:00
Mittal, Ketan d1a9c6e62d format miniapp output 2026-01-08 10:53:49 -08:00
Mittal, Ketan 8f0b57138b Merge branch 'master' of https://github.com/mfem/mfem into plbound-extremum 2026-01-08 10:37:40 -08:00
Mittal, Ketan 3167a1c98b remove default value from tol in pgridfunc.hpp 2026-01-08 10:31:19 -08:00
Andrew Ho a024fb10bc more initial solver configurations 2026-01-07 17:17:19 -08:00
Andrew Ho 531e8d7ad9 Added a way to get the residual vector r and ||r||_p 2026-01-07 17:02:25 -08:00
Ketan Mittal 5293b9694d Merge branch 'master' into lorentz-particleset 2026-01-07 16:05:25 -08:00
Andrew Ho 9008d5a050 Improved hypre's documentation and added getter methods (when possible) for solver parameters 2026-01-07 15:36:54 -08:00
Tzanio Kolev 9488637956 Merge branch 'master' into pfes 2026-01-07 14:20:49 -08:00
Tzanio Kolev c18f3ba6f9 Merge branch 'master' into add_trivial_hessian 2026-01-07 14:19:51 -08:00
Mittal, Ketan f429737c12 change 0.0 to 0_r 2026-01-06 12:22:27 -08:00
Andrew Ho ad40704e20 Merge branch 'master' into cmake-config 2026-01-06 11:55:40 -08:00
Mittal, Ketan 04fd683e9c doxygen fix 2026-01-06 11:38:42 -08:00
Mittal, Ketan 4b9f46a6b0 Merge branch 'plbound-extremum' of https://github.com/mfem/mfem into plbound-extremum 2026-01-06 11:30:04 -08:00
Mittal, Ketan 793a5b6d60 minor 2026-01-06 11:29:47 -08:00
Mittal, Ketan 4e6e9a13b6 Merge branch 'master' of https://github.com/mfem/mfem into plbound-extremum 2026-01-06 11:15:53 -08:00
Dylan Copeland 6f280d81b5 Introducing new functions for flipping index signs. 2026-01-05 18:46:25 -08:00
Tzanio Kolev d48af86cdf Merge branch 'master' into hybridization-gpu-amr 2026-01-05 16:32:49 -08:00
izaid 90353c437e Fixed bug in GetSurfaceFittingErrors 2026-01-01 23:09:09 +01:00
John Camier fbb50af208 Merge branch 'master' into debug-mem-silent 2025-12-30 12:50:33 -08:00
Andrew Ho d3470c07c9 Merge branch 'master' into cmake-config 2025-12-16 12:05:27 -08:00
adam-sim-dev bd4f07f6cb Use MPI_C_BOOL for PETSc>=3.24.0 2025-12-16 13:51:43 +08:00
Mittal, Ketan 6f72e7f752 Merge branch 'lorentz-particleset' of https://github.com/mfem/mfem into lorentz-particleset 2025-12-15 14:33:47 -08:00
Mittal, Ketan ddde1ff8d4 mpi bool fix 2025-12-15 14:33:35 -08:00
Ketan Mittal 5b917af59b Merge branch 'master' into plbound-extremum 2025-12-15 12:59:44 -08:00
Ketan Mittal 7c09989768 Merge branch 'master' into lorentz-particleset 2025-12-15 12:59:08 -08:00
Veselin Dobrev 7794557c18 Fix potential leak (redundant allocation) in FiniteElement::GetDofToQuad.
Un-nest OpenMP critical regions with the same name, DofToQuad, to fix a
hang issue. The nested critical regions were:
NodalFiniteElement::CreateLexicographicFullMap from its critical region
called NodalFiniteElement::GetDofToQuad which has a critical region with
the same name.
2025-12-15 12:10:46 -08:00
Mittal, Ketan 495cb138ee make style and fix particle trajectory vis for 0 element case 2025-12-15 09:17:36 -08:00
Mittal, Ketan b177b2f0dc fix missing ntag argument 2025-12-14 17:02:18 -08:00
Mittal, Ketan f956c6b2de function for pargridfunction 2025-12-14 16:33:38 -08:00
Mittal, Ketan 62dbc570b2 add functions to compute min/max over all elements 2025-12-14 15:57:05 -08:00
Mittal, Ketan b494d821b1 minor 2025-12-13 16:51:59 -08:00
Mittal, Ketan f63b033c72 remove some leftover code from debugging 2025-12-13 16:51:22 -08:00
Mittal, Ketan 4d782b8fad add visualization option for a bounding box to particle trajectories 2025-12-13 16:48:20 -08:00
Mittal, Ketan fc1bd60e49 Merge branch 'master' of https://github.com/mfem/mfem into lorentz-particleset 2025-12-13 15:25:15 -08:00
Mittal, Ketan c221f5a29d initial commit 2025-12-13 15:20:43 -08:00
Mittal, Ketan 112a9871ee add back removed newline 2025-12-11 14:07:15 -08:00
Mittal, Ketan 1c1ffa875e Merge branch 'master' of https://github.com/mfem/mfem into lorentz-particleset 2025-12-11 14:05:46 -08:00
Ido Akkerman 3f50a6f4ce Addig const, typos corrections and renaming 2025-12-05 08:54:33 +01:00
Mittal, Ketan 1e61c5e366 Merge branch 'particleset-particle-dev' of https://github.com/mfem/mfem into lorentz-particleset 2025-12-04 16:25:49 -08:00
Ido Akkerman ee0821d62f Fix memory leak 2025-12-03 12:34:23 +01:00
Ido Akkerman 9cd037dfdd Fix size error + tweaks in output and params 2025-12-03 11:55:20 +01:00
Ido Akkerman aaa828472f Fix type -- fix doc error 2025-12-03 11:54:54 +01:00
Ido Akkerman 15443a32a1 Add 3d hessian ordering top comments 2025-12-03 09:34:48 +01:00
Ido Akkerman 9360abf011 avoid name clash 2025-12-03 09:06:39 +01:00
Ido Akkerman 7475a13e6a Merge branch 'add_trivial_hessian' of github.com:mfem/mfem into add_trivial_hessian 2025-12-03 08:51:08 +01:00
Ido Akkerman 9d2df07b71 make style -- ?? 2025-12-03 08:50:25 +01:00
Ido Akkerman 7f80725ddc Update test_calchessian.cpp 2025-12-02 19:27:03 +01:00
Mittal, Ketan bc9ba8c8da merge and resolve conflicts 2025-12-02 09:47:10 -08:00
Mittal, Ketan 7718b37ecf formatting 2025-12-02 09:44:45 -08:00
Ido Akkerman 10efeb79d1 Improved comments 2025-12-02 17:27:30 +01:00
Ido Akkerman bdd9db4892 Add unit test to cmake 2025-12-02 17:14:10 +01:00
Ido Akkerman c0f61c5cb4 Changing comments for changed constructor 2025-12-02 17:12:54 +01:00
Ido Akkerman 85a4d88e2a NURBS HESSIAN ERRORgit add fem/fe/fe_nurbs.cppgit add fem/fe/fe_nurbs.cpp 2025-12-02 17:00:58 +01:00
Ido Akkerman fd7efca993 Add unit test for hessian 2025-12-02 17:00:14 +01:00
Ido Akkerman 742db7c701 Improve KnotVector constructor 2025-12-02 16:59:36 +01:00
Ido Akkerman 9a47796ea3 Add trivia hessians 2025-12-02 16:59:06 +01:00
Nuno Nobre f724cf348a Add toggle for SuperLU_DIST device offload 2025-12-02 14:23:05 +00:00
Andrew Ho 06a15cb7a9 missed one old unsetting of shared_link_flag 2025-12-01 17:02:05 -08:00
Andrew Ho d19ff6c676 Merge branch 'master' into cmake-config 2025-12-01 12:33:24 -08:00
Joseph Signorelli 54cb56988b rm multivector.cpp from CMakeLists.txt in linalg 2025-11-29 11:06:58 -06:00
Joseph Signorelli 09dddd6f11 style 2025-11-29 11:04:33 -06:00
Joseph Signorelli 91590f39c3 Remove multivector test and from CMakeLists 2025-11-29 11:03:14 -06:00
Joseph Signorelli 161278cd30 Remove multivector files 2025-11-29 10:59:56 -06:00
Mittal, Ketan fe3251bf02 Merge branch 'particleset-particle-dev' of https://github.com/mfem/mfem into lorentz-particleset 2025-11-25 17:46:32 -08:00
Mittal, Ketan da4f94e9ef merge master and resolve conflicts 2025-11-25 14:51:18 -08:00
Mittal, Ketan 628818b2f1 merge and clean up lorentz 2025-11-25 14:47:54 -08:00
Andrew Ho d85fbc6504 review suggestions 2025-11-25 14:35:38 -08:00
Andrew Ho 29346a87b6 Merge branch 'master' into cmake-config 2025-11-25 14:31:21 -05:00
Mittal, Ketan c9cf8d080d minor 2025-11-25 11:29:39 -08:00
EB Chin 1e7f897efb fixes for L2 space transfer 2025-11-12 16:31:18 -08:00
EB Chin 46de4f5911 ensure calls work on zero element meshes 2025-11-12 15:58:27 -08:00
Mittal, Ketan e51ea52ca4 merge upstream changes and fix redistribute to account for removed particles in lorentz 2025-11-07 14:17:00 -08:00
Andrew Ho 003afb8a4c Merge branch 'master' into hybridization-gpu-amr 2025-10-28 14:00:27 -07:00
Andrew Ho 3464f7a004 Merge branch 'master' into cmake-config 2025-10-28 11:08:38 -07:00
John Camier ce8cd01cfd Merge branch 'master' into debug-mem-silent 2025-10-28 10:20:51 -07:00
John Camier a60baf8ce6 Merge branch 'master' into debug-mem-silent 2025-10-25 11:28:07 -07:00
Andrew Ho 7de48e47ad Merge branch 'master' into cmake-config 2025-10-24 09:24:50 -07:00
Andrew Ho 70814c640b fixes for hip 2025-10-20 14:01:50 -07:00
Andrew Ho e9d3ae80f7 remove debug printout 2025-10-20 13:30:20 -07:00
Andrew Ho c8efc23c12 seems to be building external laghos now 2025-10-20 13:26:04 -07:00
Andrew Ho f26eb33252 Merge remote-tracking branch 'base/cmake-gpu' into cmake-config 2025-10-20 10:25:58 -07:00
John Camier 96bba18449 Merge branch 'master' into debug-mem-silent 2025-10-20 09:36:28 -07:00
Andrew Ho 05e622f837 improving config.mk file generated by cmake to work with hip/cuda
Still need to export compiler flags
2025-10-20 08:33:17 -07:00
Mark L. Stowell e9f84b033f Merge branch 'master' into phys-range-dim 2025-10-15 06:49:33 -07:00
Joseph Signorelli 2a013af660 Update tests in makefile 2025-10-10 16:52:29 -05:00
Joseph Signorelli 2bf7cff7b4 style 2025-10-10 16:52:19 -05:00
Joseph Signorelli fa41baa1c8 Require MFEM_USE_GSLIB to build Lorentz 2025-10-10 16:52:05 -05:00
Joseph Signorelli 6558294943 Implement ParticleSet into Lorentz 2025-10-10 16:34:31 -05:00
Joseph Signorelli 85b8bfb57d Squashed commit of the following:
commit a660b5fc07
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 16:14:12 2025 -0700

    Potential fix to std::iota not found for windows build

commit 502e422d4b
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 15:47:32 2025 -0700

    Potential fix to Particle::tags memory leak

commit a97a13a342
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 15:28:26 2025 -0700

    Minor documentation improvements

commit 65a95551ea
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 14:56:04 2025 -0700

    Fix another int comparison w/ std::size_t

commit 9fb85d2d0b
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 14:42:53 2025 -0700

    Fix remaining -Wall

commit 99cdb577fb
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 14:23:35 2025 -0700

    Fix unused const variable (for when MFEM_USE_GSLIB not defined)

commit 4c36ae0f47
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 13:42:53 2025 -0700

    Fix initialize of std::string w/ nullptr

commit ad839667c0
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 12:46:47 2025 -0700

    Single-precision

commit 8e058595b4
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 11:28:43 2025 -0700

    fix reorder-ctor error

commit e06f1a4267
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 11:21:28 2025 -0700

    use std::size_t for loops over std .size() types

commit eef84c7a10
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 11:07:12 2025 -0700

    Do not build navier_particles + navier_bifurcation if not MFEM_USE_GSLIB, in makefile

commit 916d14d2b7
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Mon Aug 18 11:06:56 2025 -0700

    Fix use of string after lifetime ends

commit 00dc6d2780
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 15:56:04 2025 -0700

    fix test errors

commit dfc786fbbf
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 15:31:48 2025 -0700

    Fix docs

commit 1f8dbc7bfe
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 15:20:23 2025 -0700

    Fix doc

commit 194f3005bb
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 15:16:46 2025 -0700

    Add channel2.mesh

commit 05103d26a9
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:42:27 2025 -0700

    Add clean to makefile for bifurcation

commit 6a6f5e4d23
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:40:59 2025 -0700

    Add navier bifurcation (+ output) to gitignore

commit 5dd665f37b
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:38:00 2025 -0700

    minor

commit f5d33d661a
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:37:18 2025 -0700

    style NavierParticles

commit 217b3d2d2d
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:36:58 2025 -0700

    Add Navier_Bifurcation

commit 5974bfbafb
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:36:27 2025 -0700

    Add GetCurrentVorticity to Navier

commit 05da808856
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 14:13:22 2025 -0700

    Add NavierParticles class

commit 7d159da97c
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 13:36:06 2025 -0700

    Add particles_redist miniapp

commit b6d6473d36
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 11:57:52 2025 -0700

    Formatting + style

commit 9ff5d24102
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 11:50:34 2025 -0700

    serial compile bug fixes

commit 3dd9427c7e
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 11:50:16 2025 -0700

    Fix bug when compiling w/o GSLIB

commit 0d0c02b715
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 11:12:34 2025 -0700

    Add miniapp common particle functions + ParticleTrajectories class

commit 355e434575
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 11:09:53 2025 -0700

    Add particles_extras.cpp/hpp to miniapps/common

commit f8fa4854bf
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 11:01:00 2025 -0700

    Add particle/particleset unit test.

commit bbed72b3c6
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 10:47:42 2025 -0700

    Add ParticleSet class

commit f377c63ea7
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 10:40:56 2025 -0700

    Add Particle class

commit ed80737a9a
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Fri Aug 15 10:32:22 2025 -0700

    Create particleset.cpp/hpp

commit 6aba0652f1
Merge: f85ee8391d 715ab0a328
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:48:37 2025 -0700

    Merge branch 'multivector-dev' into particleset-particle-dev

commit f85ee8391d
Merge: 915853cee0 86405d95a2
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:48:09 2025 -0700

    Merge branch 'fdpts-improve-dev' into particleset-particle-dev

commit 715ab0a328
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:35:47 2025 -0700

    Fix typo causing doc fail

commit 160100e0b3
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:27:19 2025 -0700

    style

commit 997942b44e
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:21:43 2025 -0700

    Add MultiVector w/ unit tests

commit a1bb9cfe9f
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:51:59 2025 -0700

    style

commit 2489dce8a0
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:49:39 2025 -0700

    Add Vector::Reserve

commit 4ea338fe53
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:44:55 2025 -0700

    Add Vector::DeleteAt w/ unit test

commit eb5a0eb132
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:39:29 2025 -0700

    Add Array::DeleteAt w/ unit test.

commit 236ba45fb9
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:11:52 2025 -0700

    Add Ordering::Reorder w/ unit test

commit e23975a2d8
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:10:41 2025 -0700

    Add test_multivector.cpp

commit 769d2914c8
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 16:02:37 2025 -0700

    Move Ordering to multivector.hpp/cpp

commit 5c87a6c665
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 15:47:17 2025 -0700

    Create new files multivector.cpp/hpp

commit 915853cee0
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:51:59 2025 -0700

    style

commit a52599d4cc
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:49:39 2025 -0700

    Add Vector::Reserve

commit 0d5b13c4aa
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:44:55 2025 -0700

    Add Vector::DeleteAt w/ unit test

commit dda6b0dbe1
Author: Joseph Signorelli <jms26@illinois.edu>
Date:   Wed Aug 13 14:39:29 2025 -0700

    Add Array::DeleteAt w/ unit test.
2025-10-10 15:14:56 -05:00
John Camier f9cce3ab62 Merge branch 'master' into debug-mem-silent 2025-09-29 09:25:14 -07:00
John Camier 292700bb52 Merge branch 'master' into debug-mem-silent 2025-09-25 15:58:22 -07:00
John Camier fd2f0df34f Merge branch 'master' into debug-mem-silent 2025-09-21 20:13:41 -07:00
John Camier 4ac41a6427 Merge branch 'master' into debug-mem-silent 2025-09-21 10:27:05 -07:00
Tzanio Kolev 58826d64c9 Merge branch 'master' into debug-mem-silent 2025-08-31 15:32:36 -07:00
Will Pazner 7714f8f42c Move Hasher to hash_util.hpp, add TupleHasher
Remove specializations of std::hash for non-user-defined types.
2025-08-26 15:31:14 -07:00
Victor DeCaria a126203ccd implement suggested change 2025-08-21 15:08:57 -06:00
victor-decaria-nnl 6656a7ef72 Merge branch 'master' into debug-mem-silent 2025-08-20 15:50:34 -04:00
Will Pazner 1c1f622b7d Add ex4 and ex4p sample runs for EA + HB + GPU 2025-08-08 10:37:24 -07:00
Will Pazner 16f1935531 Fix alias memory bug in GetLVectorFaceNbrData
gf.ExchangeFaceNbrData() may change the pointer validity of the underlying
(aliased) vector, and so the base vector's flags need to be synced.
2025-08-08 10:37:24 -07:00
Will Pazner a402b4e9b2 HostRead in SparseMatrix::BooleanMultTranspose 2025-08-08 10:37:24 -07:00
Will Pazner d269b25c17 Fix zero rows in hybridization with nonconforming ghost faces 2025-08-08 10:37:24 -07:00
Will Pazner 7573b7c9fa Support non-hybridized EA in ex4 and ex4p 2025-08-08 10:37:24 -07:00
Will Pazner 56dfb0e67f Support nonconforming AMR in GPU hybridization 2025-08-08 10:37:24 -07:00
Will Pazner 3474158bf6 Consistent naming of gather and scatter in L2InterfaceFaceRestriction 2025-08-08 10:37:24 -07:00
Will Pazner 93a2f318e0 Use unique_ptr in ParBilinearForm::FormLinearSystem 2025-08-08 10:37:24 -07:00
Will Pazner 4a5ae97be5 Support nonconforming meshes in L2InterfaceFaceRestriction 2025-08-08 10:37:24 -07:00
Will Pazner 186105c664 Add ParFiniteElementSpace::GetFaceNbrGlobalDofMapArray
Returns a reference to the Array object for GPU access
2025-08-08 10:37:24 -07:00
Will Pazner 8df6973bc7 Small fix for AMR in normal trace jump EA integrator 2025-08-08 10:37:24 -07:00
Will Pazner 2cc76c588b Remove assertions triggered when ParNCMesh::GetFaceNeighbors is called more than once 2025-08-08 10:37:24 -07:00
Will Pazner 8096c493e8 Support GPU hybridization + nonconforming AMR in serial 2025-08-08 10:37:24 -07:00
Will Pazner c0fe8c599b Handle AMR faces in L2InterfaceFaceRestriction 2025-08-08 10:37:24 -07:00
Will Pazner 7cda1566e2 Support AMR meshes in NormalTraceJumpIntegrator::AssembleEAInteriorFaces
Handle map type INTEGRAL in InterpolationManager.

For point matrices corresponding to non-conforming faces, the Jacobian may be
inverted.
2025-08-08 10:37:24 -07:00
Will Pazner e83191f54e In InterpolationManager::GetCoarseToFineInterpolation, don't flip point matrix
Flipping the point matrix causes negative Jacobians. Instead, reverse row
indices of the interpolation matrix.
2025-08-08 10:37:24 -07:00
Will Pazner 985dfe2749 Cache InterpolationManager in FiniteElementSpace
The InterpolationManager used in ParNCH1FaceRestriction is still a bit
different.
2025-08-08 10:37:24 -07:00
Will Pazner e275737aa9 Fix comment in PermuteFace2D 2025-08-08 10:37:24 -07:00
Will Pazner 91b4825cca Use unique_ptr for face restrictions in FiniteElementSpace 2025-08-08 10:37:24 -07:00
Will Pazner 4c0a122240 Doxygen for FaceInformation 2025-08-08 10:37:24 -07:00
Will Pazner db4060cf77 Add specialization of std::hash for tuple and pair
Remove ad hoc hashing functions used elsewhere
2025-08-08 10:37:24 -07:00
Will Pazner 34addd59c5 Fix shadowed variables 2025-08-08 07:01:54 -07:00
Will Pazner 8caddf1738 Default constructor is already implicitly deleted 2025-08-08 07:01:54 -07:00
Will Pazner d9ca28ba43 Use unordered_map instead of map
We don't need sorted access
2025-08-08 07:01:54 -07:00
Will Pazner a331a1951b Remove "not implemented yet" comments from functions that have been implemented 2025-08-08 07:01:54 -07:00
Will Pazner 336f1f8f35 Remove unnecessary scope 2025-08-08 07:01:54 -07:00
Mark L. Stowell 83fd119b95 Merge branch 'master' into phys-range-dim 2025-07-01 10:16:58 -07:00
John Camier 8804df317d Merge branch 'master' into debug-mem-silent 2025-07-01 09:51:06 -07:00
John Camier 95408b0fae Merge branch 'master' into debug-mem-silent 2025-06-22 20:25:51 -07:00
John Camier 79819a5563 Merge branch 'master' into debug-mem-silent 2025-06-18 10:22:04 -07:00
John Camier d57fc7c0d9 Merge branch 'master' into debug-mem-silent 2025-06-16 08:33:43 -07:00
John Camier 9fb590d79d Merge branch 'master' into debug-mem-silent 2025-06-13 08:48:05 -07:00
Victor DeCaria cb4ca9228f add option to disable protection with debug backend 2025-06-05 09:34:25 -06:00
Mark L. Stowell 4aecb86d71 Merge branch 'master' into phys-range-dim 2025-05-19 17:51:08 -07:00
Stowell, Mark L. 776a4c1815 Updating unit tests 2025-05-11 14:40:05 -07:00
Stowell, Mark L. c870d7dc1c Using new MapType entries and implementing new GetPhys*Dim methods 2025-05-11 14:39:49 -07:00
Stowell, Mark L. 8519889074 Adding new MapType entries for R2D and R1D classes 2025-05-11 14:38:50 -07:00
120 changed files with 6182 additions and 1900 deletions
+1
View File
@@ -369,6 +369,7 @@ miniapps/shifted/lsf_integral
miniapps/tools/display-basis
miniapps/tools/load-dc
miniapps/tools/convert-dc
miniapps/tools/compare-dc
miniapps/tools/gridfunction-bounds
miniapps/tools/lor-transfer
miniapps/tools/plor-transfer
+25
View File
@@ -17,11 +17,19 @@ Discretization improvements
Vector and VectorFE, also NURBS versions. Optionally different types of
projections can be selected, default behaviour has not changed.
- Added methods to estimate function extremum using piecewise linear bounds +
recursive subdivision.
Meshing improvements
--------------------
- Improved support for 1D NURBS meshes with variable order, including using
the patches construct for 1D NURBS meshes.
New and updated examples and miniapps
-------------------------------------
- Electromagnetics/lorentz miniapp has been updated to leverage the ParticleSet
capability.
Version 4.9, released on Dec 11, 2025
=====================================
@@ -106,6 +114,23 @@ Linear and nonlinear solvers
Filtering (AMGF), providing robust preconditioning for linear systems arising
in constrained optimization problems such as frictionless contact.
Added 'GetResiduals' and 'GetFinalAbsResidualNorm' to 'HyprePCG',
'HypreGMRES', and 'HypreFGMRES' to get 'r' and '|r|_p'. Note that the latter
computes '|r|_p' from 'r' instead of returning a cached value like the
relative 'GetFinalResidualNorm'. These require Hypre >= 2.15.0.
Changed the default solver parameters for 'HyprePCG' to 'tol=1e-6' and
'max_iter=1000'. This matches the default parameters in Hypre 3.0.
Added various helper functions for querying/modifying Hypre solvers:
'HypreSmoother::GetType', 'HypreSmoother::GetSOROptions',
'HypreSmoother::GetPolyOptions', 'HypreSmoother::GetWindowParameters',
'HypreSmoother::IsOperatorSymmetric', 'HyprePCG::GetTol',
'HyprePCG::GetAbsTol', 'HyprePCG::GetMaxIter', 'HyprePCG::SetUseTwoNorm',
'HypreGMRES::GetTol', 'HypreGMRES::GetAbsTol', 'HypreGMRES::GetMaxIter',
'HypreGMRES::GetKDim', 'HypreFGMRES::GetTol', 'HypreFGMRES::GetMaxIter',
'HypreFGMRES::GetKDim', and 'HypreBoomerAMG::GetMaxIter'.
GPU computing
-------------
- Added the 'gpu', 'raja-gpu', and 'ceed-gpu' backend aliases/shortcuts which
+5 -1
View File
@@ -652,6 +652,8 @@ foreach(TPL IN LISTS MFEM_TPLS)
endif()
endforeach(TPL)
# reverse to remove the first instance of entries in TPL_LIBRARIES
# so later duplicates are kept (for dependency ordering)
list(REVERSE TPL_LIBRARIES)
list(REMOVE_DUPLICATES TPL_LIBRARIES)
list(REVERSE TPL_LIBRARIES)
@@ -1015,5 +1017,7 @@ install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/data
# Create 'config.mk' from 'config.mk.in' for the build and install locations and
# define install rules for 'config.mk' and 'test.mk'
#-------------------------------------------------------------------------------
if (MFEM_USE_CUDA OR MFEM_USE_HIP)
option(MFEM_EXPORT_GPU_CONFIG "Export config.mk for GPU-enabled downstream packages" ON)
endif()
mfem_export_mk_files()
+89 -17
View File
@@ -701,7 +701,6 @@ endfunction(mfem_find_library)
# Extract compile and link options needed by the given target.
#
function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
if (NOT TARGET ${Target})
return()
endif()
@@ -799,7 +798,12 @@ function(mfem_get_target_options Target CompileOptsVar LinkOptsVar)
# message(STATUS "Lib = ${Lib}")
# Filter-out generator expressions
if (NOT ("${Lib}" MATCHES "^\\$"))
list(APPEND LinkOpts "${Lib}")
if(NOT ("${Lib}" STREQUAL "dl"))
list(APPEND LinkOpts "${Lib}")
else()
# for some reason libdl doesn't include the "-l"
list(APPEND LinkOpts "-ldl")
endif()
endif()
else()
mfem_get_target_options(${Lib} COpts LOpts)
@@ -888,9 +892,18 @@ function(mfem_export_mk_files)
set(${var} NO)
endif()
endforeach()
# TODO: Add support for MFEM_USE_CUDA=YES
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
set(MFEM_HOST_CXX ${MFEM_CXX})
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
set(MFEM_CXX ${CMAKE_CUDA_COMPILER})
if(MFEM_CUDA_COMPILER_IS_NVCC)
set(MFEM_HOST_CXX ${CMAKE_CUDA_HOST_COMPILER})
else()
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
endif()
else()
# mfem doesn't use enable_language(HIP)
set(MFEM_CXX ${CMAKE_CXX_COMPILER})
set(MFEM_HOST_CXX ${CMAKE_CXX_COMPILER})
endif()
set(MFEM_CPPFLAGS "")
get_target_property(cxx_std mfem CXX_STANDARD)
# For now, we ignore the setting of the CXX_EXTENSIONS property. If this
@@ -900,6 +913,50 @@ function(mfem_export_mk_files)
string(STRIP
"${cxx_std_flag} ${CMAKE_CXX_FLAGS_${BUILD_TYPE}} ${CMAKE_CXX_FLAGS}"
MFEM_CXXFLAGS)
if(MFEM_EXPORT_GPU_CONFIG)
if (MFEM_USE_CUDA)
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} ${CMAKE_CUDA_FLAGS}")
if (MFEM_CUDA_COMPILER_IS_NVCC)
set(MFEM_CXXFLAGS "-x=cu ${MFEM_CXXFLAGS} -ccbin ${CMAKE_CXX_COMPILER} --forward-unknown-to-host-compiler")
# The following intentionally hides CUDA deprecation warnings
foreach(ENTRY IN LISTS CUDAToolkit_INCLUDE_DIRS)
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -isystem ${ENTRY}")
endforeach()
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
# architecture flags not part of CMAKE_CUDA_FLAGS
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -arch=${CMAKE_CUDA_ARCHITECTURES}")
else()
foreach (ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
set(MFEM_CXXFLAGS
"${MFEM_CXXFLAGS} -gencode arch=compute_${ENTRY},code=sm_${ENTRY}")
endforeach()
endif()
endif()
else()
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xcuda --cuda-path=${CUDAToolkit_LIBRARY_ROOT}")
if (CMAKE_VERSION VERSION_GREATER_EQUAL 3.18.0)
# architecture flags not part of CMAKE_CUDA_FLAGS
if ("all" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "native" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}"
OR "all-major" STREQUAL "${CMAKE_CUDA_ARCHITECTURES}")
# TODO: not supported
else()
foreach(ENTRY IN LISTS CMAKE_CUDA_ARCHITECTURES)
set(MFEM_CXXFLAGS "-cuda-gpu-arch=sm_${ENTRY} ${MFEM_CXXFLAGS}")
endforeach()
endif()
endif()
endif()
elseif (MFEM_USE_HIP)
set(MFEM_CXXFLAGS "${MFEM_CXXFLAGS} -xhip")
foreach(ENTRY IN LISTS CMAKE_HIP_ARCHITECTURES)
set(MFEM_CXXFLAGS "--offload-arch=${ENTRY} ${MFEM_CXXFLAGS}")
endforeach()
endif()
endif()
set(MFEM_TPLFLAGS "")
foreach(dir ${TPL_INCLUDE_DIRS})
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} -I${dir}")
@@ -930,6 +987,9 @@ function(mfem_export_mk_files)
set(MFEM_SHARED NO)
set(MFEM_STATIC YES)
endif()
if (MFEM_USE_CUDA)
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} -lcudart")
endif()
set(MFEM_BUILD_TAG "${CMAKE_SYSTEM}")
set(MFEM_PREFIX "${CMAKE_INSTALL_PREFIX}")
# For the next 4 variables, these are the values for the build-tree version of
@@ -938,8 +998,15 @@ function(mfem_export_mk_files)
set(MFEM_LIB_DIR "${PROJECT_BINARY_DIR}")
set(MFEM_TEST_MK "${PROJECT_SOURCE_DIR}/config/test.mk")
set(MFEM_CONFIG_EXTRA "MFEM_BUILD_DIR ?= ${PROJECT_BINARY_DIR}")
# TODO: CUDA/HIP support:
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
if (MFEM_USE_CUDA AND MFEM_EXPORT_GPU_CONFIG)
if (MFEM_CUDA_COMPILER_IS_NVCC)
set(MFEM_XLINKER "-Xlinker=")
else()
set(MFEM_XLINKER "${CMAKE_CUDA_LINKER_WRAPPER_FLAG}")
endif()
else()
set(MFEM_XLINKER "${CMAKE_CXX_LINKER_WRAPPER_FLAG}")
endif()
set(MFEM_MPIEXEC ${MPIEXEC})
if (NOT MFEM_MPIEXEC)
set(MFEM_MPIEXEC "mpirun")
@@ -987,16 +1054,21 @@ function(mfem_export_mk_files)
# handle interfaces (e.g., SCOREC::apf)
if ("${lib}" MATCHES "SCOREC::.*" OR "${lib}" MATCHES "Ginkgo::.*" OR "${lib}" MATCHES "ParMoonolith::.*")
elseif (TARGET "${lib}")
mfem_get_target_options(${lib} CompileOpts LinkOpts)
mfem_get_target_options(${lib} CompileOpts2 LinkOpts2)
# remove generator expressions
string(GENEX_STRIP "${CompileOpts2}" CompileOpts)
string(GENEX_STRIP "${LinkOpts2}" LinkOpts)
# Removing duplicates may lead to issues:
# list(REMOVE_DUPLICATES CompileOpts)
# list(REMOVE_DUPLICATES LinkOpts)
string(REPLACE ";" " " COpts "${CompileOpts}")
string(REPLACE ";" " " LOpts "${LinkOpts}")
# message(STATUS "${lib}[COpts]: '${COpts}'")
# message(STATUS "${lib}[LOpts]: '${LOpts}'")
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpts}")
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpts}")
# message(WARNING "${lib}[LinkOpts]: ${LinkOpts}")
# message(WARNING "${lib}[CompileOpts]: ${CompileOpts}")
foreach(LOpt IN LISTS LinkOpts)
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${LOpt}")
endforeach()
foreach(COpt IN LISTS CompileOpts)
set(MFEM_TPLFLAGS "${MFEM_TPLFLAGS} ${COpt}")
endforeach()
# message(FATAL_ERROR "***** interface lib found ... exiting *****")
# handle static and shared libs
elseif ("${suffix}" STREQUAL "${CMAKE_SHARED_LIBRARY_SUFFIX}")
@@ -1004,7 +1076,7 @@ function(mfem_export_mk_files)
get_filename_component(fullLibName ${lib} NAME_WE)
string(REGEX REPLACE "^lib" "" libname ${fullLibName})
set(MFEM_EXT_LIBS
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
"${MFEM_EXT_LIBS} ${shared_link_flag}${dir} -L${dir} -l${libname}")
else()
set(MFEM_EXT_LIBS "${MFEM_EXT_LIBS} ${lib}")
endif()
@@ -1013,7 +1085,7 @@ function(mfem_export_mk_files)
# Create the build-tree version of 'config.mk'
configure_file(
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
"${PROJECT_BINARY_DIR}/config/config.mk")
"${PROJECT_BINARY_DIR}/config/config.mk" @ONLY)
# Copy 'test.mk' from the source-tree to the build-tree
configure_file(
"${PROJECT_SOURCE_DIR}/config/test.mk"
@@ -1031,7 +1103,7 @@ function(mfem_export_mk_files)
# Create the install-tree version of 'config.mk'
configure_file(
"${PROJECT_SOURCE_DIR}/config/config.mk.in"
"${PROJECT_BINARY_DIR}/config/config-install.mk")
"${PROJECT_BINARY_DIR}/config/config-install.mk" @ONLY)
# Install rules for 'config.mk' and 'test.mk'
install(FILES ${PROJECT_SOURCE_DIR}/config/test.mk
+1
View File
@@ -18,6 +18,7 @@
# Some choices below are based on the OS type:
NOTMAC := $(subst Darwin,,$(shell uname -s))
ASTYLE_BIN = astyle
ETAGS_BIN = $(shell command -v etags 2> /dev/null)
EGREP_BIN = $(shell command -v egrep 2> /dev/null)
+94
View File
@@ -66,6 +66,26 @@
using namespace std;
using namespace mfem;
class VisServer
{
const char *path{};
int port{-1};
struct Deleter { void operator()(FILE *); };
std::unique_ptr<FILE, Deleter> fglvis;
void Open();
public:
VisServer(const char *path_, int port_ = 19916)
: path(path_), port(port_) { Open(); }
explicit VisServer() = default;
inline const char *GetPath() const { return path; }
inline int GetPort() const { return port; }
inline bool IsOpen() const { return (fglvis != nullptr); }
};
int main(int argc, char *argv[])
{
// 1. Initialize MPI and HYPRE.
@@ -82,6 +102,7 @@ int main(int argc, char *argv[])
bool fa = false;
const char *device_config = "cpu";
bool visualization = true;
const char *visserver = "";
bool algebraic_ceed = false;
OptionsParser args(argc, argv);
@@ -106,6 +127,8 @@ int main(int argc, char *argv[])
args.AddOption(&visualization, "-vis", "--visualization", "-no-vis",
"--no-visualization",
"Enable or disable GLVis visualization.");
args.AddOption(&visserver, "-vs", "--visualization-server",
"Path to GLVis binary to start own server.");
args.Parse();
if (!args.Good())
{
@@ -301,6 +324,14 @@ int main(int argc, char *argv[])
{
char vishost[] = "localhost";
int visport = 19916;
VisServer server;
if (strlen(visserver) > 0)
{
server = VisServer(visserver, visport);
visport = server.GetPort();
}
socketstream sol_sock(vishost, visport);
sol_sock << "parallel " << num_procs << " " << myid << "\n";
sol_sock.precision(8);
@@ -315,3 +346,66 @@ int main(int argc, char *argv[])
return 0;
}
void VisServer::Open()
{
if (!path || strlen(path) <= 0) { return; }
#ifdef MFEM_USE_MPI
if (Mpi::Root())
#endif // MFEM_USE_MPI
{
// Open a log file
FILE *ftmp = popen("mktemp --tmpdir glvis-log.XXXXXX", "r");
constexpr size_t ssize = 256;
char stmp[ssize];
fgets(stmp, ssize, ftmp);
pclose(ftmp);
int len = strlen(stmp);
if (len > 0 && stmp[len-1] == '\n') { stmp[--len] = '\0'; }
std::cout << "Starting GLVis log in: " << stmp << std::endl;
// Start the server
std::stringstream ss;
ss << "trap '' SIGPIPE && " << path <<
" -no-pr -no-ex 2>&1 | tee \"" << stmp <<
"\" 2> /dev/null | grep -m 1 ^GLVIS_SERVER_PORT";
fglvis.reset(popen(ss.str().c_str(), "r"));
// Capture the port number
char line[ssize];
bool captured = false;
while (fgets(line, ssize, fglvis.get()))
{
if (strncmp(line, "GLVIS_SERVER_PORT=", 18) == 0)
{
sscanf(line, "GLVIS_SERVER_PORT=%d", &port);
captured = true;
break;
}
}
if (captured)
{
std::cout << "Started GLVis server at port: " << port << std::endl;
}
else
{
std::cerr << "GLVis server did not start normally." << std::endl;
}
}
#ifdef MFEM_USE_MPI
MPI_Bcast(&port, 1, MPI_INT, 0, MPI_COMM_WORLD);
#endif // MFEM_USE_MPI
}
void VisServer::Deleter::operator()(FILE *f)
{
if (f != nullptr)
{
int ierr = pclose(f);
if (ierr != 0)
{
std::cerr << "GLVis server pclose() returns: " << ierr << std::endl;
}
}
}
+5 -1
View File
@@ -9,6 +9,7 @@
// ex4 -m ../data/beam-hex.mesh -o 2 -pa
// ex4 -m ../data/escher.mesh
// ex4 -m ../data/fichera.mesh -o 2 -hb
// ex4 -m ../data/fichera.mesh -o 2 -hb -ea
// ex4 -m ../data/fichera-q2.vtk
// ex4 -m ../data/fichera-q3.mesh -o 2 -sc
// ex4 -m ../data/square-disc-nurbs.mesh
@@ -18,6 +19,7 @@
// ex4 -m ../data/amr-quad.mesh
// ex4 -m ../data/amr-hex.mesh
// ex4 -m ../data/amr-hex.mesh -o 2 -hb
// ex4 -m ../data/amr-hex.mesh -o 2 -hb -ea
// ex4 -m ../data/fichera-amr.mesh -o 2 -sc
// ex4 -m ../data/ref-prism.mesh -o 1
// ex4 -m ../data/octahedron.mesh -o 1
@@ -25,6 +27,8 @@
//
// Device sample runs:
// ex4 -m ../data/star.mesh -pa -d cuda
// ex4 -m ../data/star.mesh -hb -ea -d cuda
// ex4 -m ../data/amr-quad.mesh -hb -ea -d cuda
// ex4 -m ../data/star.mesh -pa -d raja-cuda
// ex4 -m ../data/star.mesh -pa -d raja-omp
// ex4 -m ../data/beam-hex.mesh -pa -d cuda
@@ -193,7 +197,7 @@ int main(int argc, char *argv[])
cout << "Size of linear system: " << A->Height() << endl;
// 11. Solve the linear system A X = B.
if (!pa)
if (!pa && (!ea || hybridization))
{
#ifndef MFEM_USE_SUITESPARSE
// Use a simple symmetric Gauss-Seidel preconditioner with PCG.
+6 -1
View File
@@ -9,6 +9,7 @@
// mpirun -np 4 ex4p -m ../data/beam-hex.mesh -o 2 -pa
// mpirun -np 4 ex4p -m ../data/escher.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/fichera.mesh -o 2 -hb
// mpirun -np 4 ex4p -m ../data/fichera.mesh -o 2 -hb -ea
// mpirun -np 4 ex4p -m ../data/fichera-q2.vtk
// mpirun -np 4 ex4p -m ../data/fichera-q3.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/square-disc-nurbs.mesh -o 3
@@ -17,14 +18,18 @@
// mpirun -np 4 ex4p -m ../data/periodic-cube.mesh -no-bc
// mpirun -np 4 ex4p -m ../data/amr-quad.mesh
// mpirun -np 3 ex4p -m ../data/amr-quad.mesh -o 2 -hb
// mpirun -np 3 ex4p -m ../data/amr-quad.mesh -o 2 -hb -ea
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -sc
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -hb
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -o 2 -hb -ea
// mpirun -np 4 ex4p -m ../data/ref-prism.mesh -o 1
// mpirun -np 4 ex4p -m ../data/octahedron.mesh -o 1
// mpirun -np 4 ex4p -m ../data/star-surf.mesh -o 3 -hb
//
// Device sample runs:
// mpirun -np 4 ex4p -m ../data/star.mesh -pa -d cuda
// mpirun -np 4 ex4p -m ../data/star.mesh -ea -hb -d cuda
// mpirun -np 4 ex4p -m ../data/amr-hex.mesh -ea -hb -d cuda
// mpirun -np 4 ex4p -m ../data/star.mesh -pa -d raja-cuda
// mpirun -np 4 ex4p -m ../data/star.mesh -pa -d raja-omp
// mpirun -np 4 ex4p -m ../data/beam-hex.mesh -pa -d cuda
@@ -230,7 +235,7 @@ int main(int argc, char *argv[])
pcg->SetMaxIter(2000);
pcg->SetPrintLevel(1);
if (hybridization) { prec = new HypreBoomerAMG(*A.As<HypreParMatrix>()); }
else if (pa) { prec = new OperatorJacobiSmoother(*a, ess_tdof_list); }
else if (pa || ea) { prec = new OperatorJacobiSmoother(*a, ess_tdof_list); }
else
{
ParFiniteElementSpace *prec_fespace =
+35 -6
View File
@@ -825,14 +825,46 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
Vector &b, OperatorHandle &A, Vector &X,
Vector &B, int copy_interior)
{
const SparseMatrix *P = fes->GetConformingProlongation();
const SparseMatrix *R = fes->GetConformingRestriction();
if (ext)
{
if (hybridization)
{
FormSystemMatrix(ess_tdof_list, A);
ConstrainedOperator A_constrained(this, ess_tdof_list);
A_constrained.EliminateRHS(x, b);
hybridization->ReduceRHS(b, B);
std::unique_ptr<ConstrainedOperator> A_constrained([&]()
{
Operator *op;
Operator::FormSystemOperator(ess_tdof_list, op);
return dynamic_cast<ConstrainedOperator*>(op);
}());
MFEM_ASSERT(A_constrained != nullptr, "");
Vector conf_b, conf_x;
if (P)
{
// Nonconforming
conf_b.SetSize(P->Width());
conf_x.SetSize(P->Width());
P->MultTranspose(b, conf_b);
R->Mult(x, conf_x);
}
else
{
// Conforming
conf_b.MakeRef(b, 0, b.Size());
conf_x.MakeRef(x, 0, x.Size());
}
A_constrained->EliminateRHS(conf_x, conf_b);
if (P)
{
R->MultTranspose(conf_b, b); // store eliminated rhs in b
}
hybridization->ReduceRHS(conf_b, B);
X.SetSize(B.Size());
X = 0.0;
}
@@ -842,7 +874,6 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
}
return;
}
const SparseMatrix *P = fes->GetConformingProlongation();
FormSystemMatrix(ess_tdof_list, A);
// Transform the system and perform the elimination in B, based on the
@@ -878,7 +909,6 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
if (hybridization)
{
// Reduction to the Lagrange multipliers system
const SparseMatrix *R = fes->GetConformingRestriction();
Vector conf_b(P->Width()), conf_x(P->Width());
P->MultTranspose(b, conf_b);
R->Mult(x, conf_x);
@@ -891,7 +921,6 @@ void BilinearForm::FormLinearSystem(const Array<int> &ess_tdof_list, Vector &x,
else
{
// Variational restriction with P
const SparseMatrix *R = fes->GetConformingRestriction();
B.SetSize(P->Width());
P->MultTranspose(b, B);
X.SetSize(R->Height());
+67 -28
View File
@@ -39,8 +39,8 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
b_type = b_type_i;
cp_type = cp_type_i;
tol = tol_i;
lbound.SetSize(nb, ncp);
ubound.SetSize(nb, ncp);
lbound.SetSize(ncp, nb);
ubound.SetSize(ncp, nb);
nodes.SetSize(nb);
weights.SetSize(nb);
control_points.SetSize(ncp);
@@ -125,21 +125,25 @@ void PLBound::Setup(const int nb_i, const int ncp_i,
{
if (j == 0)
{
lbound(i, j) = bv(i);
ubound(i, j) = bv(i);
lbound(j,i) = bv(i);
ubound(j,i) = bv(i);
}
else if (j == ncp-1)
{
lbound(i, j) = bv(i);
ubound(i, j) = bv(i);
lbound(j,i) = bv(i);
ubound(j,i) = bv(i);
}
else
{
vals(0) = bv(i);
vals(1) = bmv(i) + dm*bdmv(i);
vals(2) = bpv(i) + dp*bdpv(i);
lbound(i, j) = vals.Min()-tol; // tolerance for good measure
ubound(i, j) = vals.Max()+tol; // tolerance for good measure
lbound(j,i) = vals.Min()-tol; // tolerance for good measure
ubound(j,i) = vals.Max()+tol; // tolerance for good measure
if (b_type == 2)
{
lbound(j,i) = std::max(lbound(j,i),0_r);
}
}
}
}
@@ -273,8 +277,7 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
intmax.SetSize(ncp);
intmin = 0.0;
intmax = 0.0;
Vector coeffm(nb);
coeffm = 0.0;
Vector coeffm;
real_t a0 = 0.0;
real_t a1 = 0.0;
@@ -302,6 +305,8 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
// compute L2 projection for linear bases: a0 + a1*x
if (proj)
{
coeffm.SetSize(nb);
coeffm = 0.0;
for (int i = 0; i < nb; i++)
{
x = 2.0*nodes_int(i)-1;
@@ -342,8 +347,8 @@ void PLBound::Get1DBounds(const Vector &coeff, Vector &intmin,
real_t c = coeffm(i);
for (int j = 0; j < ncp; j++)
{
intmin(j) += min(lbound(i,j)*c, ubound(i,j)*c);
intmax(j) += max(lbound(i,j)*c, ubound(i,j)*c);
intmin(j) += min(lbound(j,i)*c, ubound(j,i)*c);
intmax(j) += max(lbound(j,i)*c, ubound(j,i)*c);
}
}
}
@@ -474,10 +479,10 @@ void PLBound::Get2DBounds(const Vector &coeff, Vector &intmin,
real_t w1 = intmaxT(id2++);
for (int k = 0; k < ncp; k++) // kth row
{
vals(0) = w0*lbound(j,k);
vals(1) = w0*ubound(j,k);
vals(2) = w1*lbound(j,k);
vals(3) = w1*ubound(j,k);
vals(0) = w0*lbound(k,j);
vals(1) = w0*ubound(k,j);
vals(2) = w1*lbound(k,j);
vals(3) = w1*ubound(k,j);
intmin(k*ncp+i) += vals.Min();
intmax(k*ncp+i) += vals.Max();
}
@@ -553,17 +558,17 @@ void PLBound::Get3DBounds(const Vector &coeff, Vector &intmin,
for (int i = 0; i < nb; i++)
{
x = 2.0*nodes(i)-1; // x-coordinate
minBounds(i) -= a0V(j) + a1V(j)*x;
maxBounds(i) -= a0V(j) + a1V(j)*x;
minNodalVals(i) -= a0V(j) + a1V(j)*x;
maxNodalVals(i) -= a0V(j) + a1V(j)*x;
}
// Compute Bernstein coefficients
LUFactors lu(basisMatLU.GetData(), lu_ip.GetData());
lu.Solve(nb, 1, minBounds.GetData());
lu.Solve(nb, 1, maxBounds.GetData());
lu.Solve(nb, 1, minNodalVals.GetData());
lu.Solve(nb, 1, maxNodalVals.GetData());
for (int i = 0; i < nb; i++)
{
intminT(i*ncp2+j) = minBounds(i);
intmaxT(i*ncp2+j) = maxBounds(i);
intminT(i*ncp2+j) = minNodalVals(i);
intmaxT(i*ncp2+j) = maxNodalVals(i);
}
}
}
@@ -617,10 +622,10 @@ void PLBound::Get3DBounds(const Vector &coeff, Vector &intmin,
real_t w1 = intmaxT(id2++);
for (int k = 0; k < ncp; k++) // kth slice
{
vals(0) = w0*lbound(j,k);
vals(1) = w0*ubound(j,k);
vals(2) = w1*lbound(j,k);
vals(3) = w1*ubound(j,k);
vals(0) = w0*lbound(k,j);
vals(1) = w0*ubound(k,j);
vals(2) = w1*lbound(k,j);
vals(3) = w1*ubound(k,j);
intmin(k*ncp2+i) += vals.Min();
intmax(k*ncp2+i) += vals.Max();
}
@@ -653,7 +658,8 @@ void PLBound::SetupBernsteinBasisMat(DenseMatrix &basisMat,
Vector &nodesBern) const
{
const int nbern = nodesBern.Size();
L2_SegmentElement el(nbern-1, 2); // we use L2 to leverage lexicographic order
L2_SegmentElement el(nbern-1, 2);
// we use L2 to leverage lexicographic order
Array<int> ordering = el.GetLexicographicOrdering();
basisMat.SetSize(nbern, nbern);
Vector shape(nbern);
@@ -666,6 +672,39 @@ void PLBound::SetupBernsteinBasisMat(DenseMatrix &basisMat,
}
}
DenseMatrix PLBound::GetBoundingMatrix(int dim, bool is_lower) const
{
if (dim > 1)
{
const int ncpd = static_cast<int>(std::pow(ncp, dim));
const int nbd = static_cast<int>(std::pow(nb, dim));
DenseMatrix boundND(ncpd, nbd);
Vector phimin, phimax, col;
Vector coeffs(nbd);
coeffs = 0.0;
for (int j = 0; j < nbd; j++)
{
coeffs(j) = 1.0;
boundND.GetColumnReference(j, col);
GetNDBounds(dim, coeffs, phimin, phimax);
col = is_lower ? phimin : phimax;
coeffs(j) = 0.0;
}
return boundND;
}
return is_lower ? lbound : ubound;
}
DenseMatrix PLBound::GetLowerBoundMatrix(int dim) const
{
return GetBoundingMatrix(dim, true);
}
DenseMatrix PLBound::GetUpperBoundMatrix(int dim) const
{
return GetBoundingMatrix(dim, false);
}
constexpr int PLBound::min_ncp_gl_x[2][11];
constexpr int PLBound::min_ncp_gll_x[2][11];
constexpr int PLBound::min_ncp_pos_x[2][11];
@@ -716,4 +755,4 @@ void PLBound::Print(std::ostream &outp) const
ubound.Print(outp);
}
}
}
+71 -20
View File
@@ -19,14 +19,18 @@ namespace mfem
{
/** @name Piecewise linear bounds of bases
\brief Piecewise linear bounds of bases can be used to compute bounds on the grid function in each element. The bounds for the bases are constructed based on the following parameters:
\brief Piecewise linear bounds of bases can be used to compute bounds on
the grid function in each element. The bounds for the bases are constructed
based on the following parameters:
(i) @b nb: number of bases/nodes in 1D (i.e. polynomial order+1),
(ii) @b b_type: bases type, 0 - Lagrange interpolants on Gauss-Legendre nodes, 1 - Lagrange interpolants on Gauss-Lobatto-Legendre nodes, and
(ii) @b b_type: bases type, 0 - Lagrange interpolants on Gauss-Legendre
nodes, 1 - Lagrange interpolants on Gauss-Lobatto-Legendre nodes, and
2 - Positive/Bernstein bases on uniformly distributed nodes,
(iii) @b ncp: number of control points used to construct the piecewise linear bounds
(iii) @b ncp: number of control points used to construct the piecewise
linear bounds
(iv) @b cp_type: control point distribution. 0 - GL + end-points,
1 - Chebyshev.
@@ -35,7 +39,9 @@ namespace mfem
If the user does not specify @b ncp and @b cp_type, the minimum value of
@b ncp is used that would bound the bases for the @b cp_type. We default
to @b cp_type = 0 as it requires fewer number of points to bound the bases. Typically, @b ncp = 2 @b nb is sufficient to get fairly compact bounds, and increasing @b ncp results in tighter bounds.
to @b cp_type = 0 as it requires fewer number of points to bound the bases.
Typically, @b ncp = 2 @b nb is sufficient to get fairly compact bounds, and
increasing @b ncp results in tighter bounds.
Finally, only tensor-product elements are currently supported.
@@ -54,7 +60,7 @@ private:
bool proj = true; // Use linear projection to compute bounds.
real_t tol = 0.0; // offset bounds to avoid round-off errors
Vector nodes, weights, control_points;
DenseMatrix lbound, ubound; // nb x ncp matrices with bounds of all bases
DenseMatrix lbound, ubound; // ncp x nb matrices with bounds of all bases
// Some auxillary storage for computing the bounds with Bernstein
DenseMatrix basisMatNodes; // Bernstein bases at equispaced nodes
DenseMatrix basisMatInt; // Bernstein bases at GLL nodes
@@ -80,6 +86,9 @@ private:
{3,5,8,9,11,12,13,13,14,15,16}
};
/// Helper function to extract lower or upper bounding matrix
DenseMatrix GetBoundingMatrix(int dim, bool is_lower) const;
public:
// Constructor
PLBound(const int nb_i, const int ncp_i, const int b_type_i,
@@ -92,40 +101,82 @@ public:
PLBound(const FiniteElementSpace *fes,
const int ncp_i = -1, const int cp_type_i = 0);
// Get minimum number of control points needed to bound the given bases
/// Get minimum number of control points needed to bound the given bases
int GetMinimumPointsForGivenBases(int nb_i, int b_type_i,
int cp_type_i) const;
// Print information about the bounds
/// Print information about the bounds
void Print(std::ostream &outp = mfem::out) const;
// Enable (default) or disable linear projection before bounding.
// This projection increases the computational cost but results in tighter
// bounds.
/** @brief Enable (default) or disable linear projection before bounding.
*
* @details This projection increases the computational cost but results in
* tighter bounds.
*/
void SetProjectionFlagForBounding(bool proj_) { proj = proj_; }
/// Compute piecewise linear bounds for the lexicographically-ordered
/// coefficients in @a coeff in 1D/2D/3D.
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
* nodal coefficients in @a coeff in 1D/2D/3D.
*
* @param[in] rdim The spatial dimension of the element (1, 2, or 3).
* @param[in] coeff The vector of lexicographically-ordered coefficients.
* Should be of size nb^rdim, where nb is the number of
* bases/nodes in 1D. These coefficients must correspond
* to the bases type and number of bases, used in the
* constructor of PLBound.
*
* @param[out] intmin The vector of minimum bound for all control points.
* @param[out] intmax The vector of maximum bound for all control points.
* Both intmin and intmax are of size ncp^rdim, where
* ncp is the number of control points in 1D, and are
* ordered lexicographically.
*/
void GetNDBounds(const int rdim, const Vector &coeff,
Vector &intmin, Vector &intmax) const;
/// Get number of control points used to compute the bounds.
int GetNControlPoints() const { return ncp; }
/// Get 1D control point locations (lexicographic order) in [0,1].
const Vector &GetControlPoints() const { return control_points; }
/** @brief Get lower and upper bounding matrix (ncp^dim x nb^dim)
*
* @details The matrices can be used to compute the bounds at control points
* by a simple matrix-vector product with the
* lexicographically-ordered nodal coefficients.
* The resulting output is also lexicographically-ordered.
*
* @note These matrices do not account for the linear projection step that
* is optionally done in GetNDBounds before bounding the function.
*/
///@{
DenseMatrix GetLowerBoundMatrix(int dim = 1) const;
DenseMatrix GetUpperBoundMatrix(int dim = 1) const;
///@}
private:
/// Compute piecewise linear bounds for the lexicographically-ordered
/// coefficients in @a coeff in 1D.
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
* nodal coefficients in @a coeff in 1D.
* See GetNDBounds for details of the input and output parameters.
*/
void Get1DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
/// Compute piecewise linear bounds for the lexicographically-ordered
/// coefficients in @a coeff in 2D.
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
* nodal coefficients in @a coeff in 2D.
* See GetNDBounds for details of the input and output parameters.
*/
void Get2DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
/// Compute piecewise linear bounds for the lexicographically-ordered
/// coefficients in @a coeff in 3D.
/** @brief Compute piecewise linear bounds for the lexicographically-ordered
* nodal coefficients in @a coeff in 3D.
* See GetNDBounds for details of the input and output parameters.
*/
void Get3DBounds(const Vector &coeff, Vector &intmin, Vector &intmax) const;
/// Setup matrix used to compute values at given 1D locations in [0,1]
/// for Bernstein bases.
/** @brief Setup matrix used to compute values at given 1D locations in [0,1]
* for Bernstein bases.
*/
void SetupBernsteinBasisMat(DenseMatrix &basisMat, Vector &nodesBern) const;
void Setup(const int nb_i, const int ncp_i, const int b_type_i,
+19
View File
@@ -82,6 +82,25 @@ public:
/// underlying #fes
int VectorDim() const;
/// Copy assignment. Only the data of the base class Vector is copied.
/** It is assumed that this object and @a rhs use FiniteElementSpace%s that
have the same size.
@note Defining this method overwrites the implicitly defined copy
assignment operator. */
ComplexGridFunction &operator=(const ComplexGridFunction &rhs)
{ return operator=((const Vector &)rhs); }
/// Copy the data from @a v.
/** The size of @a v must be equal to double of the size of the associated
FiniteElementSpace #fes. */
ComplexGridFunction &operator=(const Vector &v)
{
MFEM_ASSERT(fes && v.Size() == 2*fes->GetVSize(), "");
Vector::operator=(v);
return *this;
}
/// Assign constant values to the ComplexGridFunction data.
ComplexGridFunction &operator=(const std::complex<real_t> & value)
{ *gfr = value.real(); *gfi = value.imag(); return *this; }
+11 -8
View File
@@ -90,8 +90,8 @@ void map_quadrature_data_to_fields_impl(
}
else
{
MFEM_ABORT("quadrature data mapping to field is not implemented for"
" this field descriptor");
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
" for this field descriptor");
}
}
@@ -169,8 +169,9 @@ void map_quadrature_data_to_fields_tensor_impl_1d(
}
else
{
MFEM_ABORT("quadrature data mapping to field is not implemented for"
" this field descriptor with sum factorization on tensor product elements");
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
"for this field descriptor with sum factorization on"
" tensor product elements");
}
}
@@ -306,8 +307,9 @@ void map_quadrature_data_to_fields_tensor_impl_2d(
}
else
{
MFEM_ABORT("quadrature data mapping to field is not implemented for"
" this field descriptor with sum factorization on tensor product elements");
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
" for this field descriptor with sum factorization on"
" tensor product elements");
}
}
@@ -492,8 +494,9 @@ void map_quadrature_data_to_fields_tensor_impl_3d(
}
else
{
MFEM_ABORT("quadrature data mapping to field is not implemented for"
" this field descriptor with sum factorization on tensor product elements");
MFEM_ABORT_KERNEL("quadrature data mapping to field is not implemented"
" for this field descriptor with sum factorization on"
" tensor product elements");
}
}
+1 -1
View File
@@ -387,7 +387,7 @@ void DGMassInverse::DGMassCGIteration(const Vector &b_, Vector &u_) const
static constexpr int NB = Q1D ? Q1D : 1; // block size
mfem::forall_2D(NE, NB, NB, [=] MFEM_HOST_DEVICE (int e)
mfem::forall_2D<NB*NB>(NE, NB, NB, [=] MFEM_HOST_DEVICE (int e)
{
// Perform change of basis if needed
if (CHANGE_BASIS)
+3 -3
View File
@@ -69,9 +69,9 @@ inline int ToLexOrdering2D(const int face_id, const int size1d, const int i)
}
/// @brief Given a face DOF index on a shared face, ordered lexicographically
/// relative to element the element (where the local face is face_id), and
/// return the corresponding face DOF index ordered lexicographically relative
/// to the face itself.
/// relative to the element (where the local face is face_id), return the
/// corresponding face DOF index ordered lexicographically relative to the face
/// itself.
MFEM_HOST_DEVICE
inline int PermuteFace2D(const int face_id, const int orientation,
const int size1d, const int index)
+137 -71
View File
@@ -231,7 +231,7 @@ void FiniteElement::CalcPhysLaplacian(ElementTransformation &Trans,
{
for (int nd = 0; nd < dof; nd++)
{
Laplacian[nd] = hess(nd,0) + hess(nd,4) + hess(nd,5);
Laplacian[nd] = hess(nd,0) + hess(nd,3) + hess(nd,5);
}
}
else if (dim == 2)
@@ -268,11 +268,9 @@ void FiniteElement::CalcPhysLinLaplacian(ElementTransformation &Trans,
scale[0] = Gij(0,0);
scale[1] = 2*Gij(0,1);
scale[2] = 2*Gij(0,2);
scale[3] = 2*Gij(1,2);
scale[4] = Gij(2,2);
scale[5] = Gij(1,1);
scale[3] = Gij(1,1);
scale[4] = 2*Gij(1,2);
scale[5] = Gij(2,2);
}
else if (dim == 2)
{
@@ -309,12 +307,12 @@ void FiniteElement::CalcPhysHessian(ElementTransformation &Trans,
map[2] = 2;
map[3] = 1;
map[4] = 5;
map[5] = 3;
map[4] = 3;
map[5] = 4;
map[6] = 2;
map[7] = 3;
map[8] = 4;
map[7] = 4;
map[8] = 5;
}
else if (dim == 2)
{
@@ -382,11 +380,7 @@ const DofToQuad &FiniteElement::GetDofToQuad(const IntegrationRule &ir,
#pragma omp critical (DofToQuad)
#endif
{
for (int i = 0; i < dof2quad_array.Size(); i++)
{
d2q = dof2quad_array[i];
if (d2q->IntRule != &ir || d2q->mode != mode) { d2q = nullptr; }
}
d2q = DofToQuad::SearchArray(dof2quad_array, ir, mode);
if (!d2q)
{
#ifdef MFEM_THREAD_SAFE
@@ -661,58 +655,67 @@ void ScalarFiniteElement::ScalarLocalL2Restriction(
void NodalFiniteElement::CreateLexicographicFullMap(const IntegrationRule &ir)
const
{
// Get the FULL version of the map. This call contains omp critical region,
// so it is done before the critical region below.
auto &d2q = GetDofToQuad(ir, DofToQuad::FULL);
#if defined(MFEM_THREAD_SAFE) && defined(MFEM_USE_OPENMP)
#pragma omp critical (DofToQuad)
#endif
{
// Get the FULL version of the map.
auto &d2q = GetDofToQuad(ir, DofToQuad::FULL);
//Undo the native ordering which is what FiniteElement::GetDofToQuad returns.
auto *d2q_new = new DofToQuad(d2q);
d2q_new->mode = DofToQuad::LEXICOGRAPHIC_FULL;
const int nqpt = ir.GetNPoints();
const int b_dim = (range_type == VECTOR) ? dim : 1;
for (int i = 0; i < nqpt; i++)
// Do not run if the new Dof2Quad is already present, e.g. added in a
// previous call or added by another omp thread.
if (DofToQuad::SearchArray(dof2quad_array, ir,
DofToQuad::LEXICOGRAPHIC_FULL) == nullptr)
{
for (int d = 0; d < b_dim; d++)
// Undo the native ordering which is what FiniteElement::GetDofToQuad
// returns.
auto *d2q_new = new DofToQuad(d2q);
d2q_new->mode = DofToQuad::LEXICOGRAPHIC_FULL;
const int nqpt = ir.GetNPoints();
const int b_dim = (range_type == VECTOR) ? dim : 1;
for (int i = 0; i < nqpt; i++)
{
for (int j = 0; j < dof; j++)
for (int d = 0; d < b_dim; d++)
{
const double val = d2q.B[i + nqpt*(d+b_dim*lex_ordering[j])];
d2q_new->B[i+nqpt*(d+b_dim*j)] = val;
d2q_new->Bt[j+dof*(i+nqpt*d)] = val;
for (int j = 0; j < dof; j++)
{
const double val = d2q.B[i + nqpt*(d+b_dim*lex_ordering[j])];
d2q_new->B[i+nqpt*(d+b_dim*j)] = val;
d2q_new->Bt[j+dof*(i+nqpt*d)] = val;
}
}
}
}
const int g_dim = [this]()
{
switch (deriv_type)
const int g_dim = [this]()
{
case GRAD: return dim;
case DIV: return 1;
case CURL: return cdim;
default: return 0;
}
}();
for (int i = 0; i < nqpt; i++)
{
for (int d = 0; d < g_dim; d++)
{
for (int j = 0; j < dof; j++)
switch (deriv_type)
{
const double val = d2q.G[i + nqpt*(d+g_dim*lex_ordering[j])];
d2q_new->G[i+nqpt*(d+g_dim*j)] = val;
d2q_new->Gt[j+dof*(i+nqpt*d)] = val;
case GRAD: return dim;
case DIV: return 1;
case CURL: return cdim;
default: return 0;
}
}();
for (int i = 0; i < nqpt; i++)
{
for (int d = 0; d < g_dim; d++)
{
for (int j = 0; j < dof; j++)
{
const double val = d2q.G[i + nqpt*(d+g_dim*lex_ordering[j])];
d2q_new->G[i+nqpt*(d+g_dim*j)] = val;
d2q_new->Gt[j+dof*(i+nqpt*d)] = val;
}
}
}
dof2quad_array.Append(d2q_new);
}
dof2quad_array.Append(d2q_new);
}
}
@@ -724,13 +727,7 @@ const DofToQuad &NodalFiniteElement::GetDofToQuad(const IntegrationRule &ir,
#pragma omp critical (DofToQuad)
#endif
{
//Should make this loop a function of FiniteElement
for (int i = 0; i < dof2quad_array.Size(); i++)
{
d2q = dof2quad_array[i];
if (d2q->IntRule == &ir && d2q->mode == mode) { break; }
d2q = nullptr;
}
d2q = DofToQuad::SearchArray(dof2quad_array, ir, mode);
}
if (d2q) { return *d2q; }
if (mode != DofToQuad::LEXICOGRAPHIC_FULL)
@@ -1047,9 +1044,50 @@ void VectorFiniteElement::SetDerivMembers()
switch (map_type)
{
case H_DIV:
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
switch (dim)
{
case 3: // div: 3D H_DIV -> 3D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
case 2: // div: 2D H_DIV -> 2D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_DIV_R2D:
switch (dim)
{
case 2: // div: 2D H_DIV_R2D -> 2D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
case 1: // div: 1D H_DIV_R2D -> 1D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_DIV_R1D:
switch (dim)
{
case 1: // div: 1D H_DIV_R1D -> 1D INTEGRAL
deriv_type = DIV;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_CURL:
switch (dim)
@@ -1067,13 +1105,49 @@ void VectorFiniteElement::SetDerivMembers()
break;
case 1:
deriv_type = NONE;
deriv_range_type = SCALAR;
deriv_map_type = INTEGRAL;
deriv_range_type = UNKNOWN_RANGE_TYPE;
deriv_map_type = UNKNOWN_MAP_TYPE;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_CURL_R2D:
switch (dim)
{
case 2:
// curl: 2D H_CURL_R2D -> H_DIV_R2D
deriv_type = CURL;
deriv_range_type = VECTOR;
deriv_map_type = H_DIV_R2D;
break;
case 1:
// curl: 1D H_CURL_R2D -> H_DIV_R2D
deriv_type = CURL;
deriv_range_type = VECTOR;
deriv_map_type = H_DIV_R2D;
break;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
case H_CURL_R1D:
switch (dim)
{
case 1:
// curl: 1D H_CURL_R1D -> H_DIV_R1D
deriv_type = CURL;
deriv_range_type = VECTOR;
deriv_map_type = H_DIV_R1D;
break;
case 0:
deriv_type = NONE;
deriv_range_type = UNKNOWN_RANGE_TYPE;
deriv_map_type = UNKNOWN_MAP_TYPE;
default:
MFEM_ABORT("Invalid dimension, Dim = " << dim);
}
break;
default:
MFEM_ABORT("Invalid MapType = " << map_type);
}
@@ -2631,15 +2705,7 @@ const DofToQuad &TensorBasisElement::GetTensorDofToQuad(
#pragma omp critical (DofToQuad)
#endif
{
for (int i = 0; i < dof2quad_array.Size(); i++)
{
auto* d2q_ = dof2quad_array[i];
if (d2q_->IntRule == &ir && d2q_->mode == mode)
{
d2q = d2q_;
break;
}
}
d2q = DofToQuad::SearchArray(dof2quad_array, ir, mode);
if (!d2q)
{
d2q = new DofToQuad;
+53 -3
View File
@@ -222,6 +222,12 @@ public:
/// Returns absolute value of the maps
DofToQuad Abs() const;
/// Auxiliary function for searching DofToQuad arrays.
static inline DofToQuad *SearchArray(
const Array<DofToQuad*> &dof2quad_array,
const IntegrationRule &ir,
DofToQuad::Mode mode);
};
/// Describes the function space on each element
@@ -289,10 +295,20 @@ public:
$ u(x) = (1/w) \hat u(\hat x) $ */
H_DIV, /**< For vector fields; preserves surface integrals of the
normal component $ u(x) = (J/w) \hat u(\hat x) $ */
H_CURL /**< For vector fields; preserves line integrals of the
H_CURL, /**< For vector fields; preserves line integrals of the
tangential component
$ u(x) = J^{-t} \hat u(\hat x) $ (square J),
$ u(x) = J(J^t J)^{-1} \hat u(\hat x) $ (general J) */
H_DIV_R2D, /**< For 3-component vector fields in 2D; equivalent to a
direct sum of an H_DIV basis and an INTEGRAL basis */
H_CURL_R2D,/**< For 3-component vector fields in 2D; equivalent to a
direct sum of an H_CURL basis and a VALUE basis */
H_DIV_R1D, /**< For 3-component vector fields in 1D; equivalent to a
direct sum of a VALUE basis and a pair of INTEGRAL
bases */
H_CURL_R1D /**< For 3-component vector fields in 1D; equivalent to a
direct sum of an INTEGRAL basis and a pair of VALUE
bases */
};
/** @brief Enumeration for DerivType: defines which derivative method
@@ -324,12 +340,28 @@ public:
int GetDim() const { return dim; }
/** @brief Returns the vector dimension for vector-valued finite elements,
which is also the dimension of the interpolation operation. */
which is also the dimension of the interpolation operation and the
width of the DenseMatrix argument in
CalcVShape(const IntegrationPoint &ip, DenseMatrix &shape). */
int GetRangeDim() const { return vdim; }
/// Returns the dimension of the curl for vector-valued finite elements.
/** @brief Returns the vector dimension, in physical space, for
vector-valued finite elements, which is also the width of the
DenseMatrix argument in
CalcPhysVShape(ElementTransformation &Trans, DenseMatrix &shape). */
int GetPhysRangeDim(int /* space_dim */) const { return vdim; }
/** Returns the dimension of the curl for vector-valued finite elements,
which is also the width of the DenseMatrix argument in
CalcCurlShape(const IntegrationPoint &ip, DenseMatrix &curl_shape). */
int GetCurlDim() const { return cdim; }
/** Returns the dimension, in physical space, of the curl for vector-valued
finite elements, which is also the width of the DenseMatrix argument in
CalcPhysCurlShape(ElementTransformation &Trans, DenseMatrix &curl_shape).
*/
int GetPhysCurlDim(int /* space_dim */) const { return cdim; }
/// Returns the Geometry::Type of the reference element.
Geometry::Type GetGeomType() const { return geom_type; }
@@ -407,6 +439,7 @@ public:
/** Each row of the result DenseMatrix @a Hessian contains upper triangular
part of the Hessian of one shape function.
The order in 2D is {u_xx, u_xy, u_yy}.
The order in 3D is {u_xx, u_xy, u_xz, u_yy, u_yz, u_zz}.
The size (#dof x (#dim (#dim+1)/2) of @a Hessian must be set in advance.*/
virtual void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &Hessian) const;
@@ -983,6 +1016,8 @@ protected:
public:
VectorFiniteElement(int D, Geometry::Type G, int Do, int O, int M,
int F = FunctionSpace::Pk);
int GetPhysRangeDim(int space_dim) const { return space_dim; }
};
/// @brief Class for computing 1D special polynomials and their associated basis
@@ -1376,6 +1411,21 @@ public:
void InvertLinearTrans(ElementTransformation &trans,
const IntegrationPoint &pt, Vector &x);
// static inline method
inline DofToQuad *DofToQuad::SearchArray(
const Array<DofToQuad*> &dof2quad_array,
const IntegrationRule &ir,
DofToQuad::Mode mode)
{
for (int i = 0; i < dof2quad_array.Size(); i++)
{
DofToQuad *d2q = dof2quad_array[i];
if (d2q->IntRule == &ir && d2q->mode == mode) { return d2q; }
}
return nullptr;
}
} // namespace mfem
#endif
+48
View File
@@ -60,6 +60,12 @@ void Linear1DFiniteElement::CalcDShape(const IntegrationPoint &ip,
dshape(1,0) = 1.;
}
void Linear1DFiniteElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const
{
h = 0.0;
}
Linear2DFiniteElement::Linear2DFiniteElement()
: NodalFiniteElement(2, Geometry::TRIANGLE, 3, 1)
{
@@ -87,6 +93,11 @@ void Linear2DFiniteElement::CalcDShape(const IntegrationPoint &ip,
dshape(2,0) = 0.; dshape(2,1) = 1.;
}
void Linear2DFiniteElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const
{
h = 0.0;
}
BiLinear2DFiniteElement::BiLinear2DFiniteElement()
: NodalFiniteElement(2, Geometry::SQUARE, 4, 1, FunctionSpace::Qk)
@@ -1256,6 +1267,12 @@ void Linear3DFiniteElement::CalcDShape(const IntegrationPoint &ip,
}
}
void Linear3DFiniteElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const
{
h = 0.0;
}
void Linear3DFiniteElement::GetFaceDofs (int face, int **dofs, int *ndofs)
const
{
@@ -1632,6 +1649,37 @@ void TriLinear3DFiniteElement::CalcDShape(const IntegrationPoint &ip,
dshape(7,2) = ox * y;
}
void TriLinear3DFiniteElement::CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const
{
real_t x = ip.x, y = ip.y, z = ip.z;
real_t ox = 1.-x, oy = 1.-y, oz = 1.-z;
h(0,0) = 0.; h(0,1) = oz; h(0,2) = oy;
h(0,3) = 0.; h(0,4) = ox; h(0,5) = 0.;
h(1,0) = 0.; h(1,1) = -oz; h(1,2) = -oy;
h(1,3) = 0.; h(1,4) = x; h(1,5) = 0.;
h(2,0) = 0.; h(2,1) = oz; h(2,2) = -y;
h(2,3) = 0.; h(2,4) = -x; h(2,5) = 0.;
h(3,0) = 0.; h(3,1) = -oz; h(3,2) = y;
h(3,3) = 0.; h(3,4) = -ox; h(3,5) = 0.;
h(4,0) = 0.; h(4,1) = z; h(4,2) = -oy;
h(4,3) = 0.; h(4,4) = -ox; h(4,5) = 0.;
h(5,0) = 0.; h(5,1) = -z; h(5,2) = oy;
h(5,3) = 0.; h(5,4) = -x; h(5,5) = 0.;
h(6,0) = 0.; h(6,1) = z; h(6,2) = y;
h(6,3) = 0.; h(6,4) = x; h(6,5) = 0.;
h(7,0) = 0.; h(7,1) = -z; h(7,2) = -y;
h(7,3) = 0.; h(7,4) = ox; h(7,5) = 0.;
}
P0SegmentFiniteElement::P0SegmentFiniteElement(int Ord)
: NodalFiniteElement(1, Geometry::SEGMENT, 1, Ord) // default Ord = 0
+9 -1
View File
@@ -50,6 +50,8 @@ public:
contains the derivative of one shape function */
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const override;
};
/// A 2D linear element on triangle with nodes at the vertices of the triangle
@@ -70,6 +72,8 @@ public:
so that each row contains the derivatives of one shape function */
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const override;
void ProjectDelta(int vertex, Vector &dofs) const override
{ dofs = 0.0; dofs(vertex) = 1.0; }
};
@@ -404,6 +408,9 @@ public:
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const override;
void ProjectDelta(int vertex, Vector &dofs) const override
{ dofs = 0.0; dofs(vertex) = 1.0; }
@@ -445,7 +452,8 @@ public:
so that each row contains the derivatives of one shape function */
void CalcDShape(const IntegrationPoint &ip,
DenseMatrix &dshape) const override;
void CalcHessian(const IntegrationPoint &ip,
DenseMatrix &h) const override;
void ProjectDelta(int vertex, Vector &dofs) const override
{ dofs = 0.0; dofs(vertex) = 1.0; }
};
+1 -1
View File
@@ -589,7 +589,7 @@ void H1_TriangleElement::CalcHessian(const IntegrationPoint &ip,
Vector shape_x(p + 1), shape_y(p + 1), shape_l(p + 1);
Vector dshape_x(p + 1), dshape_y(p + 1), dshape_l(p + 1);
Vector ddshape_x(p + 1), ddshape_y(p + 1), ddshape_l(p + 1);
DenseMatrix ddu(dof, dim);
DenseMatrix ddu(dof, (dim*(dim+1))/2);
#endif
poly1d.CalcBasis(p, ip.x, shape_x, dshape_x, ddshape_x);
+4 -4
View File
@@ -2531,7 +2531,7 @@ void ND_FuentesPyramidElement::calcCurlBasis(const int p,
ND_R1D_PointElement::ND_R1D_PointElement(int p)
: VectorFiniteElement(1, Geometry::POINT, 2, p,
H_CURL, FunctionSpace::Pk)
H_CURL_R1D, FunctionSpace::Pk)
{
// VectorFiniteElement::SetDerivMembers doesn't support 0D H_CURL elements
// so we mimic a 1D element and then correct the dimension here.
@@ -2562,7 +2562,7 @@ ND_R1D_SegmentElement::ND_R1D_SegmentElement(const int p,
const int cb_type,
const int ob_type)
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 2, p,
H_CURL, FunctionSpace::Pk),
H_CURL_R1D, FunctionSpace::Pk),
dof2tk(dof),
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
@@ -2839,7 +2839,7 @@ ND_R2D_SegmentElement::ND_R2D_SegmentElement(const int p,
const int cb_type,
const int ob_type)
: VectorFiniteElement(1, Geometry::SEGMENT, 2 * p + 1, p,
H_CURL, FunctionSpace::Pk),
H_CURL_R2D, FunctionSpace::Pk),
dof2tk(dof),
cbasis1d(poly1d.GetBasis(p, VerifyClosed(cb_type))),
obasis1d(poly1d.GetBasis(p - 1, VerifyOpen(ob_type)))
@@ -3023,7 +3023,7 @@ void ND_R2D_SegmentElement::Project(VectorCoefficient &vc,
ND_R2D_FiniteElement::ND_R2D_FiniteElement(int p, Geometry::Type G, int Do,
const real_t *tk_fe)
: VectorFiniteElement(2, G, Do, p,
H_CURL, FunctionSpace::Pk),
H_CURL_R2D, FunctionSpace::Pk),
tk(tk_fe),
dof_map(dof),
dof2tk(dof)
+6
View File
@@ -663,6 +663,9 @@ public:
const int cb_type = BasisType::GaussLobatto,
const int ob_type = BasisType::GaussLegendre);
int GetPhysRangeDim(int space_dim) const { return 2; }
int GetPhysCurlDim(int space_dim) const { return 1; }
void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const override;
@@ -705,6 +708,9 @@ private:
DenseMatrix &I) const;
public:
int GetPhysRangeDim(int space_dim) const { return 3; }
int GetPhysCurlDim(int space_dim) const { return 3; }
using FiniteElement::CalcVShape;
using FiniteElement::CalcPhysCurlShape;
+3 -4
View File
@@ -445,11 +445,10 @@ void NURBS3DFiniteElement::CalcHessian (const IntegrationPoint &ip,
d2sum[0] += ( hessian(o,0) = d2sx*sy*sz*weights(o) );
d2sum[1] += ( hessian(o,1) = dsx*dsy*sz*weights(o) );
d2sum[2] += ( hessian(o,2) = dsx*sy*dsz*weights(o) );
d2sum[3] += ( hessian(o,3) = sx*d2sy*sz*weights(o) );
d2sum[4] += ( hessian(o,4) = sx*dsy*dsz*weights(o) );
d2sum[5] += ( hessian(o,5) = sx*sy*d2sz*weights(o) );
d2sum[3] += ( hessian(o,3) = sx*dsy*dsz*weights(o) );
d2sum[4] += ( hessian(o,4) = sx*sy*d2sz*weights(o) );
d2sum[5] += ( hessian(o,5) = sx*d2sy*sz*weights(o) );
}
}
}
+3 -3
View File
@@ -2006,7 +2006,7 @@ RT_R1D_SegmentElement::RT_R1D_SegmentElement(const int p,
const int cb_type,
const int ob_type)
: VectorFiniteElement(1, Geometry::SEGMENT, 3 * p + 4, p + 1,
H_DIV, FunctionSpace::Pk),
H_DIV_R1D, FunctionSpace::Pk),
dof2nk(dof),
cbasis1d(poly1d.GetBasis(p + 1, VerifyClosed(cb_type))),
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
@@ -2281,7 +2281,7 @@ const real_t RT_R2D_SegmentElement::nk[2] = { 0.,1.};
RT_R2D_SegmentElement::RT_R2D_SegmentElement(const int p,
const int ob_type)
: VectorFiniteElement(1, Geometry::SEGMENT, p + 1, p + 1,
H_DIV, FunctionSpace::Pk),
H_DIV_R2D, FunctionSpace::Pk),
dof2nk(dof),
obasis1d(poly1d.GetBasis(p, VerifyOpen(ob_type)))
{
@@ -2392,7 +2392,7 @@ void RT_R2D_SegmentElement::LocalInterpolation(const VectorFiniteElement &cfe,
RT_R2D_FiniteElement::RT_R2D_FiniteElement(int p, Geometry::Type G, int Do,
const real_t *nk_fe)
: VectorFiniteElement(2, G, Do, p + 1,
H_DIV, FunctionSpace::Pk),
H_DIV_R2D, FunctionSpace::Pk),
nk(nk_fe),
dof_map(dof),
dof2nk(dof)
+6
View File
@@ -510,6 +510,9 @@ public:
RT_R2D_SegmentElement(const int p,
const int ob_type = BasisType::GaussLegendre);
int GetPhysRangeDim(int space_dim) const { return 2; }
int GetPhysCurlDim(int space_dim) const { return 0; }
void CalcVShape(const IntegrationPoint &ip,
DenseMatrix &shape) const override;
@@ -547,6 +550,9 @@ private:
DenseMatrix &I) const;
public:
int GetPhysRangeDim(int space_dim) const { return 3; }
int GetPhysCurlDim(int space_dim) const { return 0; }
using FiniteElement::CalcVShape;
void CalcVShape(ElementTransformation &Trans,
+63 -32
View File
@@ -282,14 +282,7 @@ int FiniteElementSpace::DofToVDof(int dof, int vd, int ndofs_) const
void FiniteElementSpace::AdjustVDofs(Array<int> &vdofs)
{
int n = vdofs.Size(), *vdof = vdofs;
for (int i = 0; i < n; i++)
{
int j;
if ((j = vdof[i]) < 0)
{
vdof[i] = -1-j;
}
}
for (int i = 0; i < n; i++) { vdof[i] = UnsignIndex(vdof[i]); }
}
void FiniteElementSpace::GetElementVDofs(int i, Array<int> &vdofs,
@@ -483,13 +476,14 @@ void FiniteElementSpace::ReorderElementToDofTable()
for (int k = 0, dof_counter = 0; k < nnz; k++)
{
const int sdof = J[k]; // signed dof
const int dof = (sdof < 0) ? -1-sdof : sdof;
const int dof = UnsignIndex(sdof);
int new_dof = dof_marker[dof];
if (new_dof < 0)
{
dof_marker[dof] = new_dof = dof_counter++;
}
J[k] = (sdof < 0) ? -1-new_dof : new_dof; // preserve the sign of sdof
// Preserve the sign of sdof
J[k] = (sdof < 0) ? FlipIndexSign(new_dof) : new_dof;
}
}
@@ -547,7 +541,7 @@ void MarkDofs(const Array<int> &dofs, Array<int> &mark_array)
{
for (auto d : dofs)
{
mark_array[d >= 0 ? d : -1 - d] = -1;
mark_array[UnsignIndex(d)] = -1;
}
}
@@ -931,7 +925,7 @@ void FiniteElementSpace::AddDependencies(
if (std::abs(coef) > 1e-12)
{
const int mdof = master_dofs[j];
if (mdof != sdof && mdof != (-1-sdof))
if (mdof != sdof && mdof != FlipIndexSign(sdof))
{
deps.Add(sdof, mdof, coef);
}
@@ -1024,7 +1018,7 @@ int FiniteElementSpace::GetDegenerateFaceDofs(int index, Array<int> &dofs,
// FiniteElementSpace::AddDependencies.
Array<int> edof;
int order = GetEdgeDofs(-1 - index, edof, variant);
int order = GetEdgeDofs(FlipIndexSign(index), edof, variant);
int nv = fec->DofForGeometry(Geometry::POINT);
int ne = fec->DofForGeometry(Geometry::SEGMENT);
@@ -1516,36 +1510,76 @@ const FaceRestriction *FiniteElementSpace::GetFaceRestriction(
const bool is_dg_space = IsDGSpace();
const L2FaceValues m = (is_dg_space && mul==L2FaceValues::DoubleValued) ?
L2FaceValues::DoubleValued : L2FaceValues::SingleValued;
key_face key = std::make_tuple(is_dg_space, f_ordering, type, m);
auto key = std::make_tuple(is_dg_space, f_ordering, type, m);
auto itr = L2F.find(key);
if (itr != L2F.end())
{
return itr->second;
return itr->second.get();
}
else
{
FaceRestriction *res;
std::unique_ptr<FaceRestriction> res;
if (is_dg_space)
{
if (Conforming())
{
res = new L2FaceRestriction(*this, f_ordering, type, m);
res.reset(new L2FaceRestriction(*this, f_ordering, type, m));
}
else
{
res = new NCL2FaceRestriction(*this, f_ordering, type, m);
res.reset(new NCL2FaceRestriction(*this, f_ordering, type, m));
}
}
else if (dynamic_cast<const DG_Interface_FECollection*>(fec))
{
res = new L2InterfaceFaceRestriction(*this, f_ordering, type);
res.reset(new L2InterfaceFaceRestriction(*this, f_ordering, type));
}
else
{
res = new ConformingFaceRestriction(*this, f_ordering, type);
res.reset(new ConformingFaceRestriction(*this, f_ordering, type));
}
L2F[key] = res;
return res;
return L2F.emplace(key, std::move(res)).first->second.get();
}
}
const InterpolationManager &FiniteElementSpace::GetInterpolationManager(
ElementDofOrdering f_ordering, FaceType type) const
{
const auto key = make_tuple(f_ordering, type);
auto it = interpolations.find(key);
if (it != interpolations.end())
{
return *it->second;
}
else
{
auto interp = make_unique<InterpolationManager>(*this, f_ordering, type);
int face_idx = 0;
for (int f = 0; f < mesh->GetNumFacesWithGhost(); ++f)
{
Mesh::FaceInformation face = mesh->GetFaceInformation(f);
if (!face.IsOfFaceType(type) || face.IsNonconformingCoarse())
{
continue;
}
if (face.IsConforming() || face.IsBoundary())
{
interp->RegisterFaceConformingInterpolation(face, face_idx);
}
else
{
interp->RegisterFaceCoarseToFineInterpolation(face, face_idx);
}
++face_idx;
}
// Transform the interpolation matrix map into contiguous memory.
interp->LinearizeInterpolatorMapIntoVector();
interp->InitializeNCInterpConfig();
return *interpolations.emplace(key, std::move(interp)).first->second;
}
}
@@ -1670,8 +1704,8 @@ SparseMatrix *FiniteElementSpace::RefinementMatrix_main(
for (int i = 0; i < fine_ldof; i++)
{
int r = DofToVDof(dofs[i], vd);
int m = (r >= 0) ? r : (-1 - r);
const int r = DofToVDof(dofs[i], vd);
const int m = UnsignIndex(r);
if (!mark[m])
{
@@ -1732,7 +1766,7 @@ SparseMatrix *FiniteElementSpace::VariableOrderRefinementMatrix(
for (int i = 0; i < fine_ldof; i++)
{
const int r = DofToVDof(dofs[i], vd);
int m = (r >= 0) ? r : (-1 - r);
const int m = UnsignIndex(r);
if (!mark[m])
{
@@ -2442,8 +2476,8 @@ SparseMatrix* FiniteElementSpace::DerefinementMatrix(int old_ndofs,
{
if (!std::isfinite(lR(i, 0))) { continue; }
int r = DofToVDof(dofs[i], vd);
int m = (r >= 0) ? r : (-1 - r);
const int r = DofToVDof(dofs[i], vd);
const int m = UnsignIndex(r);
if (is_dg || !mark[m])
{
@@ -3161,7 +3195,7 @@ void FiniteElementSpace::CalcEdgeFaceVarOrders(
else
{
// degenerate face (i.e., edge-face constraint)
slave_orders |= edge_orders[-1 - slave.index];
slave_orders |= edge_orders[FlipIndexSign(slave.index)];
}
}
@@ -3969,11 +4003,8 @@ void FiniteElementSpace::Destroy()
delete E2Q_array[i];
}
E2Q_array.SetSize(0);
for (auto &x : L2F)
{
delete x.second;
}
L2F.clear();
interpolations.clear();
for (int i = 0; i < E2IFQ_array.Size(); i++)
{
delete E2IFQ_array[i];
+10 -13
View File
@@ -13,6 +13,7 @@
#define MFEM_FESPACE
#include "../config/config.hpp"
#include "../general/hash_util.hpp"
#include "../linalg/ordering.hpp"
#include "../linalg/sparsemat.hpp"
#include "../mesh/mesh.hpp"
@@ -320,18 +321,11 @@ protected:
mutable OperatorHandle L2E_nat, L2E_lex;
/// The face restriction operators, see GetFaceRestriction().
using key_face = std::tuple<bool, ElementDofOrdering, FaceType, L2FaceValues>;
struct key_hash
{
std::size_t operator()(const key_face& k) const
{
return std::get<0>(k)
+ 2 * (int)std::get<1>(k)
+ 4 * (int)std::get<2>(k)
+ 8 * (int)std::get<3>(k);
}
};
using map_L2F = std::unordered_map<const key_face,FaceRestriction*,key_hash>;
mutable map_L2F L2F;
mutable std::unordered_map<key_face,std::unique_ptr<FaceRestriction>,
TupleHasher> L2F;
mutable std::unordered_map<std::tuple<ElementDofOrdering,FaceType>,
std::unique_ptr<InterpolationManager>, TupleHasher> interpolations;
mutable Array<QuadratureInterpolator*> E2Q_array;
mutable Array<FaceQuadratureInterpolator*> E2IFQ_array;
@@ -751,6 +745,9 @@ public:
ElementDofOrdering f_ordering, FaceType,
L2FaceValues mul = L2FaceValues::DoubleValued) const;
const InterpolationManager &GetInterpolationManager(
ElementDofOrdering f_ordering, FaceType type) const;
/** @brief Return a QuadratureInterpolator that interpolates E-vectors to
quadrature point values and/or derivatives (Q-vectors). */
/** An E-vector represents the element-wise discontinuous version of the FE
@@ -1153,7 +1150,7 @@ public:
/// Helper to return the DOF associated with a sign encoded DOF
static inline int DecodeDof(int dof)
{ return (dof >= 0) ? dof : (-1 - dof); }
{ return UnsignIndex(dof); }
/// Helper to determine the DOF and sign of a sign encoded DOF
static inline int DecodeDof(int dof, real_t& sign)
+559
View File
@@ -30,6 +30,7 @@
#include <cmath>
#include <iostream>
#include <algorithm>
#include <queue>
namespace mfem
{
@@ -5117,6 +5118,103 @@ void GridFunction::GetElementBoundsAtControlPoints(const int elem,
}
}
void GridFunction::GetElementBoundsAtControlPoints(const int elem,
const PLBound &plb,
const Vector &ref_range,
const int vdim,
Vector &lower, Vector &upper,
Vector &control_pos) const
{
const FiniteElement *fe = fes->GetFE(elem);
const IntegrationRule ir_in = fe->GetNodes();
IntegrationRule ir_new(ir_in.GetNPoints());
const int dim = fes->GetMesh()->Dimension();
const L2_FECollection *l2fec = dynamic_cast<const L2_FECollection *>
(fes->FEColl());
const TensorBasisElement *tbe =
dynamic_cast<const TensorBasisElement *>(fe);
MFEM_VERIFY(tbe != NULL, "TensorBasis FiniteElement expected.");
const Array<int> &dof_map = tbe->GetDofMap();
bool lexico = (dof_map.Size() == 0);
bool bern = (tbe->GetBasisType() == BasisType::Positive);
bool h1 = (l2fec == nullptr);
Vector loc_data; // gridfunction values
// Construct an integration rule to evaluate the gridfunction in
// subinterval.
for (int i = 0; i < ir_in.GetNPoints(); i++)
{
IntegrationPoint &ip_new = ir_new.IntPoint(i);
const IntegrationPoint &ip_old =
ir_in.IntPoint((lexico || bern) ? i : dof_map[i]);
Vector ip_coord(dim);
ip_old.Get(ip_coord.GetData(), dim);
for (int d = 0; d < dim; d++)
{
ip_coord(d) = ref_range(d) +
(ref_range(dim+d) - ref_range(d)) * ip_coord(d);
}
ip_new.Set(ip_coord.GetData(), dim);
}
GetValues(elem, ir_new, loc_data, vdim);
// At this point, the loc_data contains function values ordered
// lexicographically, unless we are using Bernstein bases.
// For Bernstein, we need to project and get coefficients first.
// For bernstein, we get coefficients corresponding to these function values
if (bern)
{
int bt = 4; // BasisType::ClosedUniform
int o = fe->GetOrder();
DenseMatrix projmat;
NodalTensorFiniteElement *ntfe = nullptr;
if (dim == 1)
{
if (h1) { ntfe = new H1_SegmentElement(o, bt); }
else { ntfe = new L2_SegmentElement(o, bt); }
}
else if (dim == 2)
{
if (h1) { ntfe = new H1_QuadrilateralElement(o, bt); }
else { ntfe = new L2_QuadrilateralElement(o, bt); }
}
else if (dim == 3)
{
if (h1) { ntfe = new H1_HexahedronElement(o, bt); }
else { ntfe = new L2_HexahedronElement(o, bt); }
}
// projection matrix from H1 to Positive
ElementTransformation *eltran = fes->GetElementTransformation(elem);
fe->Project(*ntfe, *eltran, projmat);
Vector loc_data_temp(loc_data.Size());
projmat.Mult(loc_data, loc_data_temp);
for (int i = 0; i < dof_map.Size(); i++)
{
loc_data(i) = loc_data_temp(dof_map[i]);
}
if (dof_map.Size() == 0) { loc_data = loc_data_temp; }
delete ntfe;
}
// Get bounds at control points
plb.GetNDBounds(dim, loc_data, lower, upper);
// Save control point positions
int ncp = plb.GetNControlPoints();
control_pos.SetSize(dim * ncp);
const Vector control_pos_1D = plb.GetControlPoints();
for (int i = 0; i < ncp; i++)
{
for (int d = 0; d < dim; d++)
{
control_pos(i + d*ncp) =
ref_range(d) + (ref_range(dim+d)-ref_range(d))*control_pos_1D(i);
}
}
}
void GridFunction::GetElementBounds(const int elem, const PLBound &plb,
Vector &lower, Vector &upper,
const int vdim) const
@@ -5197,6 +5295,467 @@ PLBound GridFunction::GetBounds(Vector &lower, Vector &upper,
return plb;
}
struct IntervalNode
{
real_t val_min;
real_t val_max;
Array<IntervalNode *> child;
IntervalNode(real_t vmin, real_t vmax)
: val_min(vmin), val_max(vmax)
{
child.SetSize(0);
}
void AddChild(IntervalNode *ch) { child.Append(ch); }
real_t GetChildMinLower()
{
if (child.Size() == 0)
{
return val_min;
}
real_t valmin = numeric_limits<real_t>::max();
for (int i = 0; i < child.Size(); i++)
{
real_t candidate = child[i]->GetChildMinLower();
valmin = std::min(valmin, candidate);
}
return valmin;
}
real_t GetChildMinUpper()
{
if (child.Size() == 0)
{
return val_max;
}
real_t valmax = numeric_limits<real_t>::max();
for (int i = 0; i < child.Size(); i++)
{
real_t candidate = child[i]->GetChildMinUpper();
valmax = std::min(valmax, candidate);
}
return valmax;
}
real_t GetChildMaxLower()
{
if (child.Size() == 0)
{
return val_min;
}
real_t valmin = numeric_limits<real_t>::lowest();
for (int i = 0; i < child.Size(); i++)
{
real_t candidate = child[i]->GetChildMaxLower();
valmin = std::max(valmin, candidate);
}
return valmin;
}
real_t GetChildMaxUpper()
{
if (child.Size() == 0)
{
return val_max;
}
real_t valmax = numeric_limits<real_t>::lowest();
for (int i = 0; i < child.Size(); i++)
{
real_t candidate = child[i]->GetChildMaxUpper();
valmax = std::max(valmax, candidate);
}
return valmax;
}
void DeleteChildren()
{
for (int i = 0; i < child.Size(); i++)
{
child[i]->DeleteChildren();
delete child[i];
}
child.SetSize(0);
}
};
struct SearchInterval
{
Vector ref_range;
int depth;
IntervalNode *node;
SearchInterval(const Vector &ref_range_in, int d, IntervalNode *n)
: ref_range(ref_range_in), depth(d), node(n)
{ }
};
struct IntervalCompareMin
{
bool operator()(const SearchInterval *a, const SearchInterval *b) const
{
return a->node->val_min > b->node->val_min;
}
};
struct IntervalCompareMax
{
bool operator()(const SearchInterval *a, const SearchInterval *b) const
{
return a->node->val_max < b->node->val_max;
}
};
std::pair<real_t, real_t> GridFunction::EstimateFunctionMinimum(
const int elem, const PLBound &plb, const int vdim,
const int max_depth, const real_t tol) const
{
real_t min_threshold = std::numeric_limits<real_t>::max();
return EstimateFunctionMinimum(elem, plb, vdim, max_depth, tol,
min_threshold);
}
std::pair<real_t, real_t> GridFunction::EstimateFunctionMinimum(
const int elem, const PLBound &plb, const int vdim,
const int max_depth, const real_t tol, real_t &min_threshold) const
{
const int dim = this->FESpace()->GetMesh()->Dimension();
const int ncp = plb.GetNControlPoints();
Vector pos_range(2*dim); pos_range = 0.0;
for (int d = 0; d < dim; d++) { pos_range(d+dim) = 1.0; }
Vector lower, upper, cp_ref_loc;
GetElementBoundsAtControlPoints(elem, plb, lower, upper, vdim);
real_t val_min = lower.Min();
real_t val_max = upper.Min();
min_threshold = std::min(min_threshold, val_max);
// Pruning: if the element's lower bound is greater than the current global
// upper bound, this element cannot contain the global minimum.
if (val_min >= min_threshold)
{
return std::make_pair(val_min, val_max);
}
if (val_min == val_max || max_depth == 0)
{
min_threshold = std::min(min_threshold, val_min);
return std::make_pair(val_min, val_max);
}
real_t abs_tol = tol*(val_max-val_min);
IntervalNode *initial_node = new IntervalNode(val_min, val_max);
SearchInterval *initial_interval = new SearchInterval(pos_range, 0,
initial_node);
std::priority_queue<SearchInterval*,
std::vector<SearchInterval*>, IntervalCompareMin> pq;
pq.push(initial_interval);
real_t min_upper_bound = upper.Min();
real_t min_lower_bound = lower.Min();
while (!pq.empty())
{
SearchInterval *current = pq.top();
pq.pop();
int curr_depth = current->depth;
// Reached max depth or this interval cannot contain the global minimum
if (current->node->val_min >= min_threshold || curr_depth >= max_depth)
{
delete current;
continue;
}
min_lower_bound = initial_node->GetChildMinLower();
if (min_upper_bound - min_lower_bound < abs_tol)
{
delete current;
break;
}
// Subdivide the interval and get bounds on it
GetElementBoundsAtControlPoints(elem, plb, current->ref_range,
vdim, lower, upper, cp_ref_loc);
// process the bounds and create sub-intervals
for (int k = 0; k < (dim == 3 ? ncp-1 : 1); k++)
{
for (int j = 0; j < (dim >= 2 ? ncp-1 : 1); j++)
{
for (int i = 0; i < ncp-1; i++)
{
real_t lv = 0.0, uv = 0.0;
if (dim == 1)
{
lv = std::min(lower(i), lower(i+1));
uv = std::min(upper(i), upper(i+1));
}
else if (dim == 2)
{
lv = std::min({lower(i + j*ncp), lower((i+1) + j*ncp),
lower(i + (j+1)*ncp),
lower((i+1) + (j+1)*ncp)});
uv = std::min({upper(i + j*ncp), upper((i+1) + j*ncp),
upper(i + (j+1)*ncp),
upper((i+1) + (j+1)*ncp)});
}
else if (dim == 3)
{
lv = std::min({lower(i + j*ncp + k*ncp*ncp),
lower((i+1) + j*ncp + k*ncp*ncp),
lower(i + (j+1)*ncp + k*ncp*ncp),
lower((i+1) + (j+1)*ncp + k*ncp*ncp),
lower(i + j*ncp + (k+1)*ncp*ncp),
lower((i+1) + j*ncp + (k+1)*ncp*ncp),
lower(i + (j+1)*ncp + (k+1)*ncp*ncp),
lower((i+1) + (j+1)*ncp + (k+1)*ncp*ncp)});
uv = std::min({upper(i + j*ncp + k*ncp*ncp),
upper((i+1) + j*ncp + k*ncp*ncp),
upper(i + (j+1)*ncp + k*ncp*ncp),
upper((i+1) + (j+1)*ncp + k*ncp*ncp),
upper(i + j*ncp + (k+1)*ncp*ncp),
upper((i+1) + j*ncp + (k+1)*ncp*ncp),
upper(i + (j+1)*ncp + (k+1)*ncp*ncp),
upper((i+1) + (j+1)*ncp + (k+1)*ncp*ncp)});
}
IntervalNode *child_node = new IntervalNode(lv, uv);
current->node->AddChild(child_node);
if (lv < min_threshold)
{
min_upper_bound = std::min(min_upper_bound, uv);
min_threshold = std::min(min_threshold, uv);
if (curr_depth < max_depth)
{
pos_range(0) = cp_ref_loc(i);
pos_range(0+dim) = cp_ref_loc(i+1);
if (dim >= 2)
{
pos_range(1) = cp_ref_loc(ncp + j);
pos_range(1+dim) = cp_ref_loc(ncp + j+1);
}
if (dim == 3)
{
pos_range(2) = cp_ref_loc(2*ncp + k);
pos_range(2+dim) = cp_ref_loc(2*ncp + k+1);
}
SearchInterval *child_interval =
new SearchInterval(pos_range, curr_depth + 1,
child_node);
pq.push(child_interval);
}
}
}
}
}
delete current;
}
// clean up remaining intervals in queue
while (!pq.empty())
{
delete pq.top();
pq.pop();
}
min_lower_bound = initial_node->GetChildMinLower();
initial_node->DeleteChildren();
delete initial_node;
min_threshold = std::min(min_threshold, min_lower_bound);
return std::make_pair(min_lower_bound, min_upper_bound);
}
std::pair<real_t, real_t> GridFunction::EstimateFunctionMaximum(
const int elem, const PLBound &plb, const int vdim,
const int max_depth, const real_t tol) const
{
real_t max_threshold = std::numeric_limits<real_t>::lowest();
return EstimateFunctionMaximum(elem, plb, vdim, max_depth, tol,
max_threshold);
}
std::pair<real_t, real_t> GridFunction::EstimateFunctionMaximum(
const int elem, const PLBound &plb, const int vdim,
const int max_depth, const real_t tol, real_t &max_threshold) const
{
const int dim = this->FESpace()->GetMesh()->Dimension();
const int ncp = plb.GetNControlPoints();
Vector pos_range(2*dim); pos_range = 0.0;
for (int d = 0; d < dim; d++) { pos_range(d+dim) = 1.0; }
Vector lower, upper, cp_ref_loc;
GetElementBoundsAtControlPoints(elem, plb, lower, upper, vdim);
real_t val_min = lower.Max();
real_t val_max = upper.Max();
max_threshold = std::max(max_threshold, val_min);
// Pruning: if the element's upper bound is less than the current global
// lower bound, this element cannot contain the global maximum.
if (val_max <= max_threshold)
{
return std::make_pair(val_min, val_max);
}
if (val_min == val_max || max_depth == 0)
{
max_threshold = std::max(max_threshold, val_max);
return std::make_pair(val_min, val_max);
}
real_t abs_tol = tol*(val_max-val_min);
IntervalNode *initial_node = new IntervalNode(val_min, val_max);
SearchInterval *initial_interval = new SearchInterval(pos_range, 0,
initial_node);
std::priority_queue<SearchInterval*,
std::vector<SearchInterval*>, IntervalCompareMax> pq;
pq.push(initial_interval);
real_t max_lower_bound = val_min;
real_t max_upper_bound = val_max;
while (!pq.empty())
{
SearchInterval *current = pq.top();
pq.pop();
int curr_depth = current->depth;
// Reached max depth or this interval cannot contain the global maximum.
if (current->node->val_max <= max_threshold || curr_depth >= max_depth)
{
delete current;
continue;
}
max_upper_bound = initial_node->GetChildMaxUpper();
if (max_upper_bound - max_lower_bound < abs_tol)
{
delete current;
break;
}
// Subdivide the interval and get bounds on it
GetElementBoundsAtControlPoints(elem, plb, current->ref_range,
vdim, lower, upper, cp_ref_loc);
// process the bounds and create sub-intervals
for (int k = 0; k < (dim == 3 ? ncp-1 : 1); k++)
{
for (int j = 0; j < (dim >= 2 ? ncp-1 : 1); j++)
{
for (int i = 0; i < ncp-1; i++)
{
real_t lv = 0.0, uv = 0.0;
if (dim == 1)
{
lv = std::max(lower(i), lower(i+1));
uv = std::max(upper(i), upper(i+1));
}
else if (dim == 2)
{
lv = std::max({lower(i + j*ncp), lower((i+1) + j*ncp),
lower(i + (j+1)*ncp),
lower((i+1) + (j+1)*ncp)});
uv = std::max({upper(i + j*ncp), upper((i+1) + j*ncp),
upper(i + (j+1)*ncp),
upper((i+1) + (j+1)*ncp)});
}
else if (dim == 3)
{
lv = std::max({lower(i + j*ncp + k*ncp*ncp),
lower((i+1) + j*ncp + k*ncp*ncp),
lower(i + (j+1)*ncp + k*ncp*ncp),
lower((i+1) + (j+1)*ncp + k*ncp*ncp),
lower(i + j*ncp + (k+1)*ncp*ncp),
lower((i+1) + j*ncp + (k+1)*ncp*ncp),
lower(i + (j+1)*ncp + (k+1)*ncp*ncp),
lower((i+1) + (j+1)*ncp + (k+1)*ncp*ncp)});
uv = std::max({upper(i + j*ncp + k*ncp*ncp),
upper((i+1) + j*ncp + k*ncp*ncp),
upper(i + (j+1)*ncp + k*ncp*ncp),
upper((i+1) + (j+1)*ncp + k*ncp*ncp),
upper(i + j*ncp + (k+1)*ncp*ncp),
upper((i+1) + j*ncp + (k+1)*ncp*ncp),
upper(i + (j+1)*ncp + (k+1)*ncp*ncp),
upper((i+1) + (j+1)*ncp + (k+1)*ncp*ncp)});
}
IntervalNode *child_node = new IntervalNode(lv, uv);
current->node->AddChild(child_node);
if (uv > max_threshold)
{
max_lower_bound = std::max(max_lower_bound, lv);
max_threshold = std::max(max_threshold, lv);
if (curr_depth < max_depth)
{
pos_range(0) = cp_ref_loc(i);
pos_range(0+dim) = cp_ref_loc(i+1);
if (dim >= 2)
{
pos_range(1) = cp_ref_loc(ncp + j);
pos_range(1+dim) = cp_ref_loc(ncp + j+1);
}
if (dim == 3)
{
pos_range(2) = cp_ref_loc(2*ncp + k);
pos_range(2+dim) = cp_ref_loc(2*ncp + k+1);
}
SearchInterval *child_interval =
new SearchInterval(pos_range, curr_depth + 1,
child_node);
pq.push(child_interval);
}
}
}
}
}
delete current;
}
// clean up remaining intervals in queue
while (!pq.empty())
{
delete pq.top();
pq.pop();
}
max_upper_bound = initial_node->GetChildMaxUpper();
initial_node->DeleteChildren();
delete initial_node;
max_threshold = std::max(max_threshold, max_upper_bound);
return std::make_pair(max_lower_bound, max_upper_bound);
}
std::pair<real_t, real_t> GridFunction::EstimateFunctionMinimum(
const int vdim, const PLBound &plb, const int max_depth,
const real_t tol) const
{
real_t global_min_lower = std::numeric_limits<real_t>::max();
real_t global_min_upper = std::numeric_limits<real_t>::max();
for (int i = 0; i < fes->GetNE(); i++)
{
std::pair<real_t, real_t> min_pair =
EstimateFunctionMinimum(i, plb, vdim, max_depth, tol,
global_min_lower);
global_min_upper = std::min(global_min_upper, min_pair.second);
}
return std::make_pair(global_min_lower, global_min_upper);
}
std::pair<real_t, real_t> GridFunction::EstimateFunctionMaximum(
const int vdim, const PLBound &plb, const int max_depth,
const real_t tol) const
{
real_t global_max_lower = std::numeric_limits<real_t>::lowest();
real_t global_max_upper = std::numeric_limits<real_t>::lowest();
for (int i = 0; i < fes->GetNE(); i++)
{
std::pair<real_t, real_t> max_pair =
EstimateFunctionMaximum(i, plb, vdim, max_depth, tol,
global_max_upper);
global_max_lower = std::max(global_max_lower, max_pair.first);
}
return std::make_pair(global_max_lower, global_max_upper);
}
}
+117 -7
View File
@@ -564,6 +564,70 @@ protected:
/// P-refinement version of Update().
void UpdatePRef();
/** @brief Estimate the minimum value of the GridFunction in element @a elem
* if it is below a certain @a min_threshold.
*
* @details For a given element \p elem and grid function component \p vdim
* an estimate of the function minimum is the minimum of the piecewise
* linear lower bound obtained using the given PLBound object. The actual
* minimum is between [minimum lower bound, minimum upper bound]. We
* improve the estimate of the function minimum by recursively
* subdividing the interval with the lowest lower bound, and computing
* bounds on the sub-intervals.
* This process continues until (i) the maximum recursion depth is reached
* or (ii) the difference between the minimum upper bound and minimum lower
* bound is less than a certain tolerance (\p tol * [initial maximum
* upper bound - initial minimum lower bound]).
* The function also terminates if the lowest minima estimate is found
* to be above the given threshold \p min_threshold. This is useful when
* we are interested in computing the global minimum of the function
* over all elements. In this case we can reject elements where the lowest
* bound is above the current global minimum. In case the function
* minimum on the element is below the global minimum, we update
* \p min_threshold.
*
* We return a pair of values that bracket the actual minimum, i.e.
* [min_lower_bound, min_upper_bound].
*/
std::pair<real_t,real_t> EstimateFunctionMinimum(const int elem,
const PLBound &plb,
const int vdim,
const int max_depth,
const real_t tol,
real_t &min_threshold)const;
/** @brief Estimate the maximum value of the GridFunction in element @a elem
* if it is below a certain @a max_threshold.
*
* @details For a given element \p elem and grid function component \p vdim
* an estimate of the function maximum is the maximum of the piecewise
* linear upper bound obtained using the given PLBound object. The actual
* maximum is between [maximum lower bound, maximum upper bound]. We
* improve the estimate of the function maximum by recursively
* subdividing the interval with the highest upper bound, and computing
* bounds on the sub-intervals.
* This process continues until (i) the maximum recursion depth is reached
* or (ii) the difference between the maximum upper bound and maximum lower
* bound is less than a certain tolerance (\p tol * [initial maximum
* upper bound - initial maximum lower bound]).
* The function also terminates if the highest maxima estimate is found
* to be below the given threshold \p max_threshold. This is useful when
* we are interested in computing the global maximum of the function
* over all elements. In this case we can reject elements where the upper
* bound is below the current global maximum. In case the function
* maximum on the element is above the global maximum, we update
* \p max_threshold.
*
* We return a pair of values that bracket the actual maximum, i.e.
* [max_lower_bound, max_upper_bound].
*/
std::pair<real_t,real_t> EstimateFunctionMaximum(const int elem,
const PLBound &plb,
const int vdim,
const int max_depth,
const real_t tol,
real_t &max_threshold)const;
public:
/** @brief For each vdof, counts how many elements contain the vdof,
as containment is determined by FiniteElementSpace::GetElementVDofs(). */
@@ -1662,21 +1726,21 @@ public:
*/
///@{
/// Computes the \ref PLBound for the gridfunction with number of control
/// points based on @a ref_factor, and returns the overall bounds for each
/// vdim (across all elements) in @b lower and @b upper. We also return the
/// points based on \p ref_factor, and returns the overall bounds for each
/// vdim (across all elements) in \p lower and \p upper. We also return the
/// PLBound object used to compute the bounds.
/// We compute the bounds for each vdim if @a vdim < 1.
/// We compute the bounds for each vdim if \p vdim < 1.
/// Note: For most cases, this method/interface will be sufficient.
virtual PLBound GetBounds(Vector &lower, Vector &upper,
const int ref_factor=1, const int vdim=-1) const;
/// Computes the \ref PLBound for the gridfunction with number of control
/// points based on @a ref_factor, and returns the bounds for each element
/// ordered byVDim:
/// points based on \p ref_factor, and returns the bounds for each element
/// ordered byNodes:
/// lower_{0,0}, lower_{1,0}, ..., lower_{ne-1,0},
/// lower_{0,1}, ..., lower_{ne-1,vdim-1}. We also return the
/// PLBound object used to compute the bounds.
/// We compute the bounds for each vdim if @a vdim < 1.
/// We compute the bounds for each vdim if \p vdim < 1.
PLBound GetElementBounds(Vector &lower, Vector &upper,
const int ref_factor=1, const int vdim=-1) const;
@@ -1687,6 +1751,18 @@ public:
Vector &lower, Vector &upper,
const int vdim = -1) const;
/** @brief Gets the bounds on given reference range inside an element.
*
* @details @a ref_range is a vector of size 2*dim that specifies the
* lower and upper limits in each dimension of the reference element.
* For example, in 2D, ref_range = [rmin, smin, rmax, smax].
*/
void GetElementBoundsAtControlPoints(const int elem, const PLBound &plb,
const Vector &ref_range,
const int vdim,
Vector &lower, Vector &upper,
Vector &control_pos) const;
/// Compute bounds on the grid function for the given element.
/// The bounds are stored in @b lower and @b upper.
void GetElementBounds(const int elem, const PLBound &plb,
@@ -1694,11 +1770,45 @@ public:
const int vdim = -1) const;
/// Compute bounds on the grid function for all the elements. The bounds
/// are returned in @b lower and @b upper, ordered byVDim:
/// are returned in @b lower and @b upper, ordered byNodes:
/// lower_{0,0}, lower_{1,0}, ..., lower_{ne-1,0},
/// lower_{0,1}, ..., lower_{ne-1,vdim-1}
void GetElementBounds(const PLBound &plb, Vector &lower, Vector &upper,
const int vdim=-1) const;
/** @brief Estimate the minimum value of the GridFunction in element @a elem.
*
* @details See the protected version of EstimateFunctionMinimum for
* details.
*/
std::pair<real_t, real_t> EstimateFunctionMinimum(const int elem,
const PLBound &plb,
const int vdim,
const int max_depth,
const real_t tol) const;
/** @brief Estimate the minimum value of the GridFunction in element @a elem.
*
* @details See the protected version of EstimateFunctionMaximum for
* details.
*/
std::pair<real_t, real_t> EstimateFunctionMaximum(const int elem,
const PLBound &plb,
const int vdim,
const int max_depth,
const real_t tol) const;
/** @brief Estimate the GridFunction minimum across all elements. */
virtual std::pair<real_t,real_t> EstimateFunctionMinimum(const int vdim,
const PLBound &plb,
const int max_depth,
const real_t tol) const;
/** @brief Estimate the GridFunction maximum across all elements. */
virtual std::pair<real_t,real_t> EstimateFunctionMaximum(const int vdim,
const PLBound &plb,
const int max_depth,
const real_t tol) const;
///@}
/// Destroys grid function.
+59 -32
View File
@@ -234,7 +234,7 @@ void FindPointsGSLIB::Setup(Mesh &m, const double bb_t, const double newt_tol,
}
void FindPointsGSLIB::FindPoints(const Vector &point_pos,
int point_pos_ordering)
const int point_pos_ordering)
{
MFEM_VERIFY(setupflag, "Use FindPointsGSLIB::Setup before finding points.");
bool dev_mode = (point_pos.UseDevice() && Device::IsEnabled());
@@ -482,7 +482,7 @@ void FindPointsGSLIB::SetupDevice()
}
void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
int point_pos_ordering)
const int point_pos_ordering)
{
if (!DEV.setup_device)
{
@@ -505,13 +505,13 @@ void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
if (dim == 2)
{
FindPointsLocal2(point_pos, point_pos_ordering, gsl_code, gsl_elem, gsl_ref,
gsl_dist, points_cnt);
FindPointsLocal2(point_pos, point_pos_ordering, gsl_code, gsl_elem,
gsl_ref, gsl_dist, points_cnt);
}
else
{
FindPointsLocal3(point_pos, point_pos_ordering, gsl_code, gsl_elem, gsl_ref,
gsl_dist, points_cnt);
FindPointsLocal3(point_pos, point_pos_ordering, gsl_code, gsl_elem,
gsl_ref, gsl_dist, points_cnt);
}
// Sync from device to host
@@ -1085,7 +1085,7 @@ void FindPointsGSLIB::InterpolateOnDevice(const Vector &field_in_evec,
#else
void FindPointsGSLIB::SetupDevice() {};
void FindPointsGSLIB::FindPointsOnDevice(const Vector &point_pos,
int point_pos_ordering) {};
const int point_pos_ordering) {};
void FindPointsGSLIB::InterpolateOnDevice(const Vector &field_in_evec,
Vector &field_out,
const int nel, const int ncomp,
@@ -1094,7 +1094,8 @@ void FindPointsGSLIB::InterpolateOnDevice(const Vector &field_in_evec,
#endif
void FindPointsGSLIB::FindPoints(Mesh &m, const Vector &point_pos,
int point_pos_ordering, const double bb_t,
const int point_pos_ordering,
const double bb_t,
const double newt_tol, const int npt_max)
{
if (!setupflag || (mesh != &m) )
@@ -1105,16 +1106,28 @@ void FindPointsGSLIB::FindPoints(Mesh &m, const Vector &point_pos,
}
void FindPointsGSLIB::Interpolate(const Vector &point_pos,
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering)
const GridFunction &field_in,
Vector &field_out,
const int point_pos_ordering)
{
FindPoints(point_pos, point_pos_ordering);
Interpolate(field_in, field_out);
}
void FindPointsGSLIB::Interpolate(const Vector &point_pos,
const GridFunction &field_in,
Vector &field_out,
const int point_pos_ordering,
const int field_out_ordering)
{
FindPoints(point_pos, point_pos_ordering);
Interpolate(field_in, field_out, field_out_ordering);
}
void FindPointsGSLIB::Interpolate(Mesh &m, const Vector &point_pos,
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering)
const GridFunction &field_in,
Vector &field_out,
const int point_pos_ordering)
{
FindPoints(m, point_pos, point_pos_ordering);
Interpolate(field_in, field_out);
@@ -1470,7 +1483,7 @@ void FindPointsGSLIB::SetupSplitMeshesAndIntegrationRules(const int order)
}
void FindPointsGSLIB::GetNodalValues(const GridFunction *gf_in,
Vector &node_vals)
Vector &node_vals) const
{
const GridFunction *nodes = gf_in;
const FiniteElementSpace *fes = nodes->FESpace();
@@ -1758,6 +1771,13 @@ void FindPointsGSLIB::MapRefPosAndElemIndices()
void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
Vector &field_out)
{
Interpolate(field_in, field_out, field_in.FESpace()->GetOrdering());
}
void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
Vector &field_out,
const int field_out_ordering)
{
const int gf_order = field_in.FESpace()->GetMaxElementOrder(),
mesh_order = mesh->GetNodalFESpace()->GetMaxElementOrder();
@@ -1800,7 +1820,7 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
const int maxOrder = field_in.FESpace()->GetMaxElementOrder();
InterpolateOnDevice(node_vals, field_out, NE_split_total, ncomp,
maxOrder+1, field_in.FESpace()->GetOrdering());
maxOrder+1, field_out_ordering);
return;
#endif
}
@@ -1812,12 +1832,13 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
field_in.FESpace()->IsVariableOrder() ==
mesh->GetNodalFESpace()->IsVariableOrder())
{
InterpolateH1(field_in, field_out);
InterpolateH1(field_in, field_out, field_out_ordering);
return;
}
else
{
InterpolateGeneral(field_in, field_out);
InterpolateGeneral(field_in, field_out,
field_out_ordering);
if (!fec_l2 || avgtype == AvgType::NONE) { return; }
}
@@ -1861,11 +1882,11 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
if (gf_order_h1 == mesh_order) // basis is GaussLobatto by default
{
InterpolateH1(field_in_h1, field_out_l2);
InterpolateH1(field_in_h1, field_out_l2, field_out_ordering);
}
else
{
InterpolateGeneral(field_in_h1, field_out_l2);
InterpolateGeneral(field_in_h1, field_out_l2, field_out_ordering);
}
// Copy interpolated values for the points on element border
@@ -1873,7 +1894,7 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
{
for (int i = 0; i < indl2.Size(); i++)
{
int idx = field_in_h1.FESpace()->GetOrdering() == Ordering::byNODES?
int idx = field_out_ordering == Ordering::byNODES?
indl2[i] + j*points_cnt:
indl2[i]*ncomp + j;
field_out(idx) = field_out_l2(idx);
@@ -1883,7 +1904,8 @@ void FindPointsGSLIB::Interpolate(const GridFunction &field_in,
}
void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
Vector &field_out)
Vector &field_out,
const int field_out_ordering)
{
FiniteElementSpace ind_fes(mesh, field_in.FESpace()->FEColl());
if (field_in.FESpace()->IsVariableOrder())
@@ -1913,7 +1935,8 @@ void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
dataptrout = i*points_cnt;
if (field_in.FESpace()->GetOrdering() == Ordering::byNODES)
{
field_in_scalar.NewDataAndSize(field_in.GetData()+dataptrin, points_fld);
field_in_scalar.NewDataAndSize(field_in.GetData()+dataptrin,
points_fld);
}
else
{
@@ -1945,7 +1968,7 @@ void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
(gslib::findpts_data_3 *)this->fdataD);
}
}
if (field_in.FESpace()->GetOrdering() == Ordering::byVDIM)
if (field_out_ordering == Ordering::byVDIM)
{
Vector field_out_temp = field_out;
for (int i = 0; i < ncomp; i++)
@@ -1959,7 +1982,8 @@ void FindPointsGSLIB::InterpolateH1(const GridFunction &field_in,
}
void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
Vector &field_out)
Vector &field_out,
const int field_out_ordering)
{
int ncomp = field_in.VectorDim(),
nptorig = points_cnt,
@@ -1979,7 +2003,7 @@ void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
if (dim == 3) { ip.z = gsl_mfem_ref(index*dim + 2); }
Vector localval(ncomp);
field_in.GetVectorValue(gsl_mfem_elem[index], ip, localval);
if (field_in.FESpace()->GetOrdering() == Ordering::byNODES)
if (field_out_ordering == Ordering::byNODES)
{
for (int i = 0; i < ncomp; i++)
{
@@ -2014,7 +2038,10 @@ void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
for (int index = 0; index < npt; index++)
{
if (gsl_code[index] == 2) { continue; }
for (int d = 0; d < dim; ++d) { pt->r[d]= gsl_mfem_ref(index*dim + d); }
for (int d = 0; d < dim; ++d)
{
pt->r[d]= gsl_mfem_ref(index*dim + d);
}
pt->index = index;
pt->proc = gsl_proc[index];
pt->el = gsl_mfem_elem[index];
@@ -2104,7 +2131,7 @@ void FindPointsGSLIB::InterpolateGeneral(const GridFunction &field_in,
sdpt = (struct send_pt *)sendpt->ptr;
for (int index = 0; index < static_cast<int>(sendpt->n); index++)
{
int idx = field_in.FESpace()->GetOrdering() == Ordering::byNODES ?
int idx = field_out_ordering == Ordering::byNODES ?
sdpt->index + j*nptorig :
sdpt->index*ncomp + j;
field_out(idx) = sdpt->ival;
@@ -2246,7 +2273,7 @@ void FindPointsGSLIB::DistributeInterpolatedValues(const Vector &int_vals,
}
}
void FindPointsGSLIB::GetAxisAlignedBoundingBoxes(Vector &aabb)
void FindPointsGSLIB::GetAxisAlignedBoundingBoxes(Vector &aabb) const
{
MFEM_VERIFY(setupflag, "Call FindPointsGSLIB::Setup method first");
auto *findptsData3 = (gslib::findpts_data_3 *)this->fdataD;
@@ -2317,7 +2344,7 @@ void FindPointsGSLIB::GetAxisAlignedBoundingBoxes(Vector &aabb)
}
void FindPointsGSLIB::GetOrientedBoundingBoxes(DenseTensor &obbA, Vector &obbC,
Vector &obbV)
Vector &obbV) const
{
MFEM_VERIFY(setupflag, "Call FindPointsGSLIB::Setup method first");
auto *findptsData3 = (gslib::findpts_data_3 *)this->fdataD;
@@ -2502,8 +2529,8 @@ void OversetFindPointsGSLIB::Setup(Mesh &m, const int meshid,
}
void OversetFindPointsGSLIB::FindPoints(const Vector &point_pos,
Array<unsigned int> &point_id,
int point_pos_ordering)
const Array<unsigned int> &point_id,
const int point_pos_ordering)
{
MFEM_VERIFY(setupflag, "Use OversetFindPointsGSLIB::Setup before "
"finding points.");
@@ -2582,10 +2609,10 @@ void OversetFindPointsGSLIB::FindPoints(const Vector &point_pos,
}
void OversetFindPointsGSLIB::Interpolate(const Vector &point_pos,
Array<unsigned int> &point_id,
const Array<unsigned int> &point_id,
const GridFunction &field_in,
Vector &field_out,
int point_pos_ordering)
const int point_pos_ordering)
{
FindPoints(point_pos, point_id, point_pos_ordering);
Interpolate(field_in, field_out);
+32 -15
View File
@@ -119,11 +119,13 @@ protected:
} DEV;
/// Use GSLIB for communication and interpolation
virtual void InterpolateH1(const GridFunction &field_in, Vector &field_out);
virtual void InterpolateH1(const GridFunction &field_in, Vector &field_out,
const int field_out_ordering);
/// Uses GSLIB Crystal Router for communication followed by MFEM's
/// interpolation functions
virtual void InterpolateGeneral(const GridFunction &field_in,
Vector &field_out);
Vector &field_out,
const int field_out_ordering);
/// Since GSLIB is designed to work with quads/hexes, we split every
/// triangle/tet/prism/pyramid element into quads/hexes.
@@ -140,7 +142,7 @@ protected:
virtual void SetupSplitMeshesAndIntegrationRules(const int order);
/// Get GridFunction value at the points expected by GSLIB.
virtual void GetNodalValues(const GridFunction *gf_in, Vector &node_vals);
virtual void GetNodalValues(const GridFunction *gf_in, Vector &node_vals) const;
/// Map {r,s,t} coordinates from [-1,1] to [0,1] for MFEM. For simplices,
/// find the original element number (that was split into micro quads/hexes)
@@ -182,7 +184,7 @@ protected:
These positions can be ordered byNodes: (XXX...,YYY...,ZZZ) or
byVDim: (XYZ,XYZ,....XYZ) specified by @a point_pos_ordering. */
void FindPointsOnDevice(const Vector &point_pos,
int point_pos_ordering = Ordering::byNODES);
const int point_pos_ordering = Ordering::byNODES);
/** Interpolation of field values at prescribed reference space positions.
@param[in] field_in_evec E-vector of grid function to be interpolated.
@@ -253,10 +255,15 @@ public:
#gsl_dist Distance between the sought and the found point
in physical space. */
void FindPoints(const Vector &point_pos,
int point_pos_ordering = Ordering::byNODES);
const int point_pos_ordering = Ordering::byNODES);
/// Convenience function when point positions are in a ParticleVector
void FindPoints(const ParticleVector &point_pos)
{
FindPoints(point_pos, point_pos.GetOrdering());
}
/// Setup FindPoints and search positions
void FindPoints(Mesh &m, const Vector &point_pos,
int point_pos_ordering = Ordering::byNODES,
const int point_pos_ordering = Ordering::byNODES,
const double bb_t = 0.1, const double newt_tol = 1.0e-12,
const int npt_max = 256);
@@ -266,20 +273,28 @@ public:
\p field_in is in H1 and in the same space as the
mesh that was given to Setup().
@param[out] field_out Interpolated values. For points that are not found
the value is set to #default_interp_value. */
the value is set to #default_interp_value.
The output ordering is determined from field_in.*/
virtual void Interpolate(const GridFunction &field_in, Vector &field_out);
/// Interpolation of field values, with output ordering specification.
virtual void Interpolate(const GridFunction &field_in, Vector &field_out,
const int field_out_ordering);
/** Search positions and interpolate. The ordering (byNODES or byVDIM) of
the output values in \p field_out corresponds to the ordering used
in the input GridFunction \p field_in. */
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
Vector &field_out,
int point_pos_ordering = Ordering::byNODES);
const int point_pos_ordering = Ordering::byNODES);
/// Search positions and interpolate with given point and output ordering.
void Interpolate(const Vector &point_pos, const GridFunction &field_in,
Vector &field_out, const int point_pos_ordering,
const int field_out_ordering);
/** Setup FindPoints, search positions and interpolate. The ordering (byNODES
or byVDIM) of the output values in \p field_out corresponds to the
ordering used in the input GridFunction \p field_in. */
void Interpolate(Mesh &m, const Vector &point_pos,
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering = Ordering::byNODES);
const int point_pos_ordering = Ordering::byNODES);
/// Average type to be used for L2 functions in-case a point is located at
/// an element boundary where the function might be multi-valued.
@@ -376,7 +391,7 @@ public:
/// The size of the returned vector is (nel x nverts x dim), where nel is the
/// number of elements (after splitting for simplcies), nverts is number of
/// vertices (4 in 2D, 8 in 3D), and dim is the spatial dimension.
void GetAxisAlignedBoundingBoxes(Vector &aabb);
void GetAxisAlignedBoundingBoxes(Vector &aabb) const;
/// Return the oriented bounding boxes (OBB) computed during \ref Setup.
/// Each OBB is represented using the inverse transformation (A^{-1}) and
@@ -386,7 +401,8 @@ public:
/// size (dim x dim x nel), and the OBB centers are returned in \p obbC,
/// a vector of size (nel x dim). The vertices of the OBBs are returned in
/// \p obbV, a vector of size (nel x nverts x dim) .
void GetOrientedBoundingBoxes(DenseTensor &obbA, Vector &obbC, Vector &obbV);
void GetOrientedBoundingBoxes(DenseTensor &obbA, Vector &obbC,
Vector &obbV) const;
};
/** \brief OversetFindPointsGSLIB enables use of findpts for arbitrary number of
@@ -446,13 +462,14 @@ public:
byNodes: (XXX...,YYY...,ZZZ) or
byVDim: (XYZ,XYZ,....XYZ) */
void FindPoints(const Vector &point_pos,
Array<unsigned int> &point_id,
int point_pos_ordering = Ordering::byNODES);
const Array<unsigned int> &point_id,
const int point_pos_ordering = Ordering::byNODES);
/** Search positions and interpolate */
void Interpolate(const Vector &point_pos, Array<unsigned int> &point_id,
void Interpolate(const Vector &point_pos,
const Array<unsigned int> &point_id,
const GridFunction &field_in, Vector &field_out,
int point_pos_ordering = Ordering::byNODES);
const int point_pos_ordering = Ordering::byNODES);
using FindPointsGSLIB::Interpolate;
};
+7 -1
View File
@@ -789,7 +789,6 @@ void Hybridization::ComputeH()
}
else
{
// TODO: add ones on the diagonal of zero rows
V->Finalize();
Array<HYPRE_BigInt> V_J(V->NumNonZeroElems());
MFEM_ASSERT(c_pfes, "");
@@ -823,6 +822,13 @@ void Hybridization::ComputeH()
MFEM_VERIFY(pH.Type() != Operator::PETSC_MATIS, "To be implemented");
pH.MakePtAP(plpH, pP);
delete lpH;
HypreParMatrix *hH = pH.As<HypreParMatrix>();
MFEM_ASSERT(hH, "");
SparseMatrix H_diag;
hH->GetDiag(H_diag);
H_diag.SetDiagIdentity();
}
#endif
}
+455 -275
View File
File diff suppressed because it is too large Load Diff
+20 -2
View File
@@ -14,8 +14,11 @@
#include "../config/config.hpp"
#include "../general/array.hpp"
#include "../linalg/operator.hpp"
#include "../linalg/vector.hpp"
#include <memory>
namespace mfem
{
@@ -45,15 +48,30 @@ protected:
Array<int> hat_dof_gather_map;
Array<DofType> hat_dof_marker;
Array<int> el_to_face;
Array<int> face_to_el;
Array<int> el_to_face; ///< Element to face connectivity.
Array<int> el_face_offsets; ///< Per-element offsets into @a el_to_face.
Array<int> face_to_el; ///< Face-to-element connectivity.
Array<int> face_face_offsets; ///< Face-to-face offsets.
int n_el_face; ///< Total number of element-to-face connections.
int n_face_face; ///< Total number of face-to-face connections.
Vector Ct_mat; ///< Constraint matrix (transposed) stored element-wise.
/// @name For parallel non-conforming meshes
///@{
std::unique_ptr<Operator> P_pc; ///< Partially conforming prolongation.
std::unique_ptr<Operator> P_nbr; ///< Face-neighbor prolongation.
///@}
Array<int> idofs, bdofs;
Vector Ahat, Ahat_ii, Ahat_ib, Ahat_bi, Ahat_bb;
Array<int> Ahat_ii_piv, Ahat_bb_piv;
/// Return the (partially) conforming prolongation on the constraint space.
const Operator &GetProlongation() const;
public:
/// Construct the constraint matrix.
void ConstructC();
+8 -5
View File
@@ -1004,13 +1004,16 @@ inline void SmemPADiffusionApply3D(const int NE,
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
MFEM_VERIFY(D1D <= max_d1d, "");
MFEM_VERIFY(Q1D <= max_q1d, "");
auto b = Reshape(b_.Read(), Q1D, D1D);
auto g = Reshape(g_.Read(), Q1D, D1D);
auto d = Reshape(d_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
const auto b = Reshape(b_.Read(), Q1D, D1D);
const auto g = Reshape(g_.Read(), Q1D, D1D);
const auto d = Reshape(d_.Read(), Q1D, Q1D, Q1D, symmetric ? 6 : 9, NE);
const auto x = Reshape(x_.Read(), D1D, D1D, D1D, NE);
auto y = Reshape(y_.ReadWrite(), D1D, D1D, D1D, NE);
MFEM_VERIFY(D1D <= Q1D, "THREAD_DIRECT requires D1D <= Q1D");
mfem::forall_3D(NE, Q1D, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
mfem::forall_3D<T_Q1D*T_Q1D*T_Q1D>(NE,
Q1D, Q1D, Q1D,
[=] MFEM_HOST_DEVICE (int e)
{
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
+6 -6
View File
@@ -1133,11 +1133,11 @@ inline void SmemPAMassApply3D(const int NE,
const int max_d1d = T_D1D ? T_D1D : DeviceDofQuadLimits::Get().MAX_D1D;
MFEM_VERIFY(D1D <= max_d1d, "");
MFEM_VERIFY(Q1D <= max_q1d, "");
auto b = b_.Read();
auto d = d_.Read();
auto x = x_.Read();
const auto b = b_.Read();
const auto d = d_.Read();
const auto x = x_.Read();
auto y = y_.ReadWrite();
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE (int e)
{
internal::SmemPAMassApply3D_Element<T_D1D,T_Q1D>(e, NE, b, d, x, y, d1d, q1d);
});
@@ -1156,8 +1156,8 @@ inline void EAMassAssemble1D(const int NE,
const int Q1D = T_Q1D ? T_Q1D : q1d;
MFEM_VERIFY(D1D <= DeviceDofQuadLimits::Get().MAX_D1D, "");
MFEM_VERIFY(Q1D <= DeviceDofQuadLimits::Get().MAX_Q1D, "");
auto B = Reshape(basis.Read(), Q1D, D1D);
auto D = Reshape(padata.Read(), Q1D, NE);
const auto B = Reshape(basis.Read(), Q1D, D1D);
const auto D = Reshape(padata.Read(), Q1D, NE);
auto M = Reshape(add ? eadata.ReadWrite() : eadata.Write(), D1D, D1D, NE);
mfem::forall_2D(NE, D1D, D1D, [=] MFEM_HOST_DEVICE (int e)
{
+98 -20
View File
@@ -28,7 +28,7 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
const FaceType ftype = FaceType::Interior;
const int nf = mesh.GetNFbyType(ftype);
const Geometry::Type geom = mesh.GetFaceGeometry(0);
const Geometry::Type geom = mesh.GetTypicalFaceGeometry();
const int trial_order = trial_fes.GetMaxElementOrder();
const int test_order = test_fes.GetMaxElementOrder();
const int qorder = test_order + trial_order - 1;
@@ -47,7 +47,7 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
});
}
const FiniteElement &trial_face_el = *trial_fes.GetFaceElement(0);
const FiniteElement &trial_face_el = *trial_fes.GetTypicalTraceElement();
const auto maps = &trial_face_el.GetDofToQuad(ir, DofToQuad::TENSOR);
const int ndof_face = trial_face_el.GetDof();
@@ -72,7 +72,7 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
MFEM_ABORT("Unknown kernel.");
}
const FiniteElement &test_el = *test_fes.GetFE(0);
const FiniteElement &test_el = *test_fes.GetTypicalFE();
const int n_faces_per_el = 2*dim; // assuming tensor product
// Get all the local face maps (mapping from lexicographic face index to
// lexicographic volume index, depending on the local face index).
@@ -90,10 +90,10 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
Array<int> face_info(nf * 4);
{
int fidx = 0;
for (int f = 0; f < mesh.GetNumFaces(); ++f)
for (int f = 0; f < mesh.GetNumFacesWithGhost(); ++f)
{
Mesh::FaceInformation finfo = mesh.GetFaceInformation(f);
if (!finfo.IsInterior()) { continue; }
if (!finfo.IsInterior() || finfo.IsNonconformingCoarse()) { continue; }
face_info[0 + fidx*4] = finfo.element[0].local_face_id;
face_info[1 + fidx*4] = finfo.element[0].orientation;
face_info[2 + fidx*4] = finfo.element[1].local_face_id;
@@ -114,7 +114,7 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
else
{
d_emat = emat.Write();
mfem::forall(emat.Size(), [=] MFEM_HOST_DEVICE (int i) { d_emat[i] = 0.0; });
emat = 0.0; // Will execute on device, since Write() sets the device flag
}
const auto face_mats = Reshape(mass_emat.Read(), ndof_face, ndof_face, nf);
@@ -133,26 +133,104 @@ void NormalTraceJumpIntegrator::AssembleEAInteriorFaces(
}
};
mfem::forall_3D(nf, ndof_face, ndof_face, 2, [=] MFEM_HOST_DEVICE (int f)
auto permute_face_2 = [=] MFEM_HOST_DEVICE(int local_face_1, int local_face_2,
int orient, int size1d, int index)
{
MFEM_FOREACH_THREAD(el_i, z, 2)
if (dim == 2)
{
const int lf_i = d_face_info(0, el_i, f);
const int orient = d_face_info(1, el_i, f);
// Loop over face indices in "native ordering"
MFEM_FOREACH_THREAD(i_lex, x, ndof_face)
return internal::PermuteFace2D(local_face_1, local_face_2, orient,
size1d, index);
}
else // dim == 3
{
return internal::PermuteFace3D(local_face_1, local_face_2, orient,
size1d, index);
}
};
if (mesh.Conforming())
{
mfem::forall_3D(nf, ndof_face, ndof_face, 2, [=] MFEM_HOST_DEVICE (int f)
{
MFEM_FOREACH_THREAD(el_i, z, 2)
{
// Convert to lexicographic relative to the face itself
const int i_face = permute_face(lf_i, orient, d1d, i_lex);
// Convert from lexicographic face DOF to volume DOF
const int i = d_face_maps(i_lex, lf_i);
MFEM_FOREACH_THREAD(j, y, ndof_face)
const int lf_i = d_face_info(0, el_i, f);
const int orient = d_face_info(1, el_i, f);
// Loop over face indices in "native ordering"
MFEM_FOREACH_THREAD(i_lex, x, ndof_face)
{
el_mats(i, j, el_i, f) += face_mats(i_face, j, f);
// Convert to lexicographic relative to the face itself
const int i_face = permute_face(lf_i, orient, d1d, i_lex);
// Convert from lexicographic face DOF to volume DOF
const int i = d_face_maps(i_lex, lf_i);
MFEM_FOREACH_THREAD(j, y, ndof_face)
{
el_mats(i, j, el_i, f) += face_mats(i_face, j, f);
}
}
}
}
});
});
}
else
{
const InterpolationManager &interp =
test_fes.GetInterpolationManager(ElementDofOrdering::LEXICOGRAPHIC, ftype);
auto interp_configs = interp.GetFaceInterpConfig().Read();
const int nc_size = interp.GetNumInterpolators();
auto d_interp = Reshape(interp.GetInterpolators().Read(),
ndof_face, ndof_face, nc_size);
mfem::forall(nf, [=] MFEM_HOST_DEVICE (int f)
{
const InterpConfig conf = interp_configs[f];
const int master_side = conf.master_side;
const int interp_index = conf.index;
const int lf_0 = d_face_info(0, 0, f);
for (int el_i = 0; el_i < 2; ++el_i)
{
const int lf_i = d_face_info(0, el_i, f);
const int orient = d_face_info(1, el_i, f);
for (int j = 0; j < ndof_face; j++)
{
for (int i_lex = 0; i_lex < ndof_face; i_lex++)
{
real_t val = 0.0;
if (conf.is_non_conforming && el_i == master_side)
{
// Interpolate from el_i (coarse element) to the fine face.
// The mapping is given by d_interp, which uses indices
// relative to element 0.
// i0 is lexicographic relative to element 0
const int i0 = permute_face_2(lf_i, lf_0, orient, d1d, i_lex);
// k0 is lexicographic relative to element 0
for (int k0 = 0; k0 < ndof_face; k0++)
{
// k is relative to the face itself
const int k = permute_face(lf_0, orient, d1d, k0);
val += d_interp(k0, i0, interp_index)
* face_mats(k, j, f);
}
}
else
{
// Convert to lexicographic relative to the face itself
const int i_face = permute_face(lf_i, orient, d1d, i_lex);
val = face_mats(i_face, j, f);
}
// Convert from lexicographic face DOF to volume DOF
const int i = d_face_maps(i_lex, lf_i);
el_mats(i, j, el_i, f) += val;
}
}
}
});
}
}
}
+5 -5
View File
@@ -54,7 +54,7 @@ void SmemPAVectorDiffusionApply2D(const int NE,
const auto XE = Reshape(x.Read(), D1D, D1D, SDIM, NE);
auto YE = Reshape(y.ReadWrite(), D1D, D1D, SDIM, NE);
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
{
constexpr int MD1 = T_D1D > 0 ? SetMaxOf(T_D1D) : DofQuadLimits::MAX_T1D;
constexpr int MQ1 = T_Q1D > 0 ? SetMaxOf(T_Q1D) : DofQuadLimits::MAX_T1D;
@@ -120,7 +120,7 @@ void SmemPAVectorDiffusionApply3D(const int NE,
const auto XE = Reshape(x.Read(), D1D, D1D, D1D, SDIM, NE);
auto YE = Reshape(y.ReadWrite(), D1D, D1D, D1D, SDIM, NE);
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
{
constexpr int MD1 = T_D1D > 0 ? SetMaxOf(T_D1D) : DofQuadLimits::MAX_T1D;
constexpr int MQ1 = T_Q1D > 0 ? SetMaxOf(T_Q1D) : DofQuadLimits::MAX_T1D;
@@ -171,15 +171,15 @@ template<int DIM, int T_SDIM, int T_D1D, int T_Q1D>
VectorDiffusionIntegrator::ApplyKernelType
VectorDiffusionIntegrator::ApplyPAKernels::Kernel()
{
if (DIM == 2)
if constexpr (DIM == 2)
{
return internal::SmemPAVectorDiffusionApply2D<T_SDIM, T_D1D, T_Q1D>;
}
else if (DIM == 3)
else if constexpr (DIM == 3)
{
return internal::SmemPAVectorDiffusionApply3D<T_SDIM, T_D1D, T_Q1D>;
}
else { MFEM_ABORT("Unsupported kernel"); }
MFEM_ABORT("Unsupported kernel");
}
inline VectorDiffusionIntegrator::ApplyKernelType
+5 -5
View File
@@ -51,7 +51,7 @@ void SmemPAVectorMassApply2D(const int NE,
const auto X = Reshape(x.Read(), D1D, D1D, VDIM, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, VDIM, NE);
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
{
constexpr int MD1 = T_D1D > 0 ? SetMaxOf(T_D1D) : DofQuadLimits::MAX_T1D;
constexpr int MQ1 = T_Q1D > 0 ? SetMaxOf(T_Q1D) : DofQuadLimits::MAX_T1D;
@@ -119,7 +119,7 @@ void SmemPAVectorMassApply3D(const int NE,
const auto X = Reshape(x.Read(), D1D, D1D, D1D, VDIM, NE);
auto Y = Reshape(y.ReadWrite(), D1D, D1D, D1D, VDIM, NE);
mfem::forall_2D(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
mfem::forall_2D<T_Q1D*T_Q1D>(NE, Q1D, Q1D, [=] MFEM_HOST_DEVICE(int e)
{
constexpr int MD1 = T_D1D > 0 ? SetMaxOf(T_D1D) : DofQuadLimits::MAX_T1D;
constexpr int MQ1 = T_Q1D > 0 ? SetMaxOf(T_Q1D) : DofQuadLimits::MAX_T1D;
@@ -182,15 +182,15 @@ template<int DIM, int T_D1D, int T_Q1D>
VectorMassIntegrator::VectorMassAddMultPAType
VectorMassIntegrator::VectorMassAddMultPA::Kernel()
{
if (DIM == 2)
if constexpr (DIM == 2)
{
return internal::SmemPAVectorMassApply2D<T_D1D,T_Q1D>;
}
else if (DIM == 3)
else if constexpr (DIM == 3)
{
return internal::SmemPAVectorMassApply3D<T_D1D, T_Q1D>;
}
else { MFEM_ABORT("Unsupported kernel"); }
MFEM_ABORT("Unsupported kernel");
}
inline VectorMassIntegrator::VectorMassAddMultPAType
+6 -10
View File
@@ -301,18 +301,14 @@ template <int DIM, int T_D1D, int T_Q1D>
DomainLFIntegrator::AssembleKernelType
DomainLFIntegrator::AssembleKernels::Kernel()
{
switch (DIM)
{
case 1:
return DLFEvalAssemble1D<T_D1D, T_Q1D>;
case 2:
return DLFEvalAssemble2D<T_D1D, T_Q1D>;
case 3:
return DLFEvalAssemble3D<T_D1D, T_Q1D>;
}
if constexpr (DIM == 1) { return DLFEvalAssemble1D<T_D1D, T_Q1D>; }
if constexpr (DIM == 2) { return DLFEvalAssemble2D<T_D1D, T_Q1D>; }
if constexpr (DIM == 3) { return DLFEvalAssemble3D<T_D1D, T_Q1D>; }
MFEM_ABORT("");
}
/// \endcond DO_NOT_DOCUMENT
} // namespace mfem
#endif
#endif // MFEM_LININTEG_DOMAIN_KERNELS_HPP
+3 -31
View File
@@ -14,6 +14,7 @@
#include "../config/config.hpp"
#include "kernel_reporter.hpp"
#include "../general/hash_util.hpp"
#include <unordered_map>
#include <tuple>
#include <type_traits>
@@ -86,35 +87,6 @@ namespace mfem
} \
}
/// @brief Hashes variadic packs for which each type contained in the variadic
/// pack has a specialization of `std::hash` available.
///
/// For example, packs containing int, bool, enum values, etc.
template<typename ...KernelParameters>
struct KernelDispatchKeyHash
{
private:
template<int N>
size_t operator()(std::tuple<KernelParameters...> value) const { return 0; }
// The hashing formula here is taken directly from the Boost library, with
// the magic number 0x9e3779b9 chosen to minimize hashing collisions.
template<std::size_t N, typename THead, typename... TTail>
size_t operator()(std::tuple<KernelParameters...> value) const
{
constexpr int Index = N - sizeof...(TTail) - 1;
auto lhs_hash = std::hash<THead>()(std::get<Index>(value));
auto rhs_hash = operator()<N, TTail...>(value);
return lhs_hash^(rhs_hash + 0x9e3779b9 + (lhs_hash<<6) + (lhs_hash>>2));
}
public:
/// Returns the hash of the given @a value.
size_t operator()(std::tuple<KernelParameters...> value) const
{
return operator()<sizeof...(KernelParameters),KernelParameters...>(value);
}
};
namespace internal { template<typename... Types> struct KernelTypeList { }; }
template<typename... T> class KernelDispatchTable { };
@@ -128,8 +100,8 @@ class KernelDispatchTable<Kernels,
internal::KernelTypeList<Params...>,
internal::KernelTypeList<OptParams...>>
{
using TableType = std::unordered_map<std::tuple<Params...>,
Signature, KernelDispatchKeyHash<Params...>>;
using TableType =
std::unordered_map<std::tuple<Params...>, Signature, TupleHasher>;
TableType table;
/// @brief Call function @a f with arguments @a args (perfect forwaring).
+6 -5
View File
@@ -158,15 +158,16 @@ void LORBase::ConstructLocalDofPermutation(Array<int> &perm_) const
int i;
i = dofmap_lor[off_lor + i1 + i2*2];
int s1 = i < 0 ? -1 : 1;
int idof_lor = vdof_lor[absdof(i)];
int idof_lor = vdof_lor[UnsignIndex(i)];
i = dofmap_ho[off_ho + i1*n1 + i2*n2];
int s2 = i < 0 ? -1 : 1;
int idof_ho = vdof_ho[absdof(i)];
int idof_ho = vdof_ho[UnsignIndex(i)];
int s3 = idof_lor < 0 ? -1 : 1;
int s4 = idof_ho < 0 ? -1 : 1;
int s = s1*s2*s3*s4;
i = absdof(idof_ho);
perm_[absdof(idof_lor)] = s < 0 ? -1-absdof(i) : absdof(i);
i = UnsignIndex(idof_ho);
perm_[UnsignIndex(idof_lor)] = s < 0 ? -1-UnsignIndex(i) :
UnsignIndex(i);
}
}
};
@@ -232,7 +233,7 @@ void LORBase::ConstructDofPermutation() const
int j = l_perm[i];
int s = j < 0 ? -1 : 1;
int t_i = pfes_lor->GetLocalTDofNumber(i);
int t_j = pfes_ho->GetLocalTDofNumber(absdof(j));
int t_j = pfes_ho->GetLocalTDofNumber(UnsignIndex(j));
// Either t_i and t_j both -1, or both non-negative
if ((t_i < 0 && t_j >=0) || (t_j < 0 && t_i >= 0))
{
-2
View File
@@ -57,8 +57,6 @@ private:
/// values (after temporarily changing them for LOR assembly).
void ResetIntegrationRules(GetIntegratorsFn get_integrators);
static inline int absdof(int i) { return i < 0 ? -1-i : i; }
protected:
enum FESpaceType { H1, ND, RT, L2, INVALID };
+9 -3
View File
@@ -488,10 +488,16 @@ void ParBilinearForm::FormLinearSystem(
R.Mult(x, true_X);
FormSystemMatrix(ess_tdof_list, A);
ConstrainedOperator *A_constrained;
Operator::FormConstrainedSystemOperator(ess_tdof_list, A_constrained);
std::unique_ptr<ConstrainedOperator> A_constrained([&]()
{
Operator *op;
Operator::FormSystemOperator(ess_tdof_list, op);
return dynamic_cast<ConstrainedOperator*>(op);
}());
MFEM_ASSERT(A_constrained != nullptr, "");
A_constrained->EliminateRHS(true_X, true_B);
delete A_constrained;
R.MultTranspose(true_B, b);
hybridization->ReduceRHS(true_B, B);
X.SetSize(B.Size());
+49 -56
View File
@@ -424,7 +424,7 @@ void ParFiniteElementSpace::GetGroupComm(
{
if (ind[l] < 0)
{
dofs[l] = m + (-1-ind[l]);
dofs[l] = m + FlipIndexSign(ind[l]);
if (g_ldof_sign)
{
(*g_ldof_sign)[dofs[l]] = -1;
@@ -462,7 +462,7 @@ void ParFiniteElementSpace::GetGroupComm(
{
if (ind[l] < 0)
{
dofs[l] = m + (-1-ind[l]);
dofs[l] = m + FlipIndexSign(ind[l]);
if (g_ldof_sign)
{
(*g_ldof_sign)[dofs[l]] = -1;
@@ -500,7 +500,7 @@ void ParFiniteElementSpace::GetGroupComm(
{
if (ind[l] < 0)
{
dofs[l] = m + (-1-ind[l]);
dofs[l] = m + FlipIndexSign(ind[l]);
if (g_ldof_sign)
{
(*g_ldof_sign)[dofs[l]] = -1;
@@ -538,16 +538,16 @@ void ParFiniteElementSpace::ApplyLDofSigns(Array<int> &dofs) const
{
if (dofs[i] < 0)
{
if (ldof_sign[-1-dofs[i]] < 0)
if (ldof_sign[FlipIndexSign(dofs[i])] < 0)
{
dofs[i] = -1-dofs[i];
dofs[i] = FlipIndexSign(dofs[i]);
}
}
else
{
if (ldof_sign[dofs[i]] < 0)
{
dofs[i] = -1-dofs[i];
dofs[i] = FlipIndexSign(dofs[i]);
}
}
}
@@ -646,39 +646,38 @@ const FaceRestriction *ParFiniteElementSpace::GetFaceRestriction(
auto itr = L2F.find(key);
if (itr != L2F.end())
{
return itr->second;
return itr->second.get();
}
else
{
FaceRestriction *res;
std::unique_ptr<FaceRestriction> res;
if (is_dg_space)
{
if (Conforming())
{
res = new ParL2FaceRestriction(*this, f_ordering, type, m);
res.reset(new ParL2FaceRestriction(*this, f_ordering, type, m));
}
else
{
res = new ParNCL2FaceRestriction(*this, f_ordering, type, m);
res.reset(new ParNCL2FaceRestriction(*this, f_ordering, type, m));
}
}
else if (dynamic_cast<const DG_Interface_FECollection*>(fec))
{
res = new L2InterfaceFaceRestriction(*this, f_ordering, type);
res.reset(new L2InterfaceFaceRestriction(*this, f_ordering, type));
}
else
{
if (Conforming())
{
res = new ConformingFaceRestriction(*this, f_ordering, type);
res.reset(new ConformingFaceRestriction(*this, f_ordering, type));
}
else
{
res = new ParNCH1FaceRestriction(*this, f_ordering, type);
res.reset(new ParNCH1FaceRestriction(*this, f_ordering, type));
}
}
L2F[key] = res;
return res;
return L2F.emplace(key, std::move(res)).first->second.get();
}
}
@@ -700,7 +699,8 @@ void ParFiniteElementSpace::GetSharedEdgeDofs(
for (int i = 0; i < dofs.Size(); i++)
{
const int di = dofs[i];
dofs[i] = (di >= 0) ? rdofs[di] : -1-rdofs[-1-di];
dofs[i] = di >= 0 ? rdofs[di] :
FlipIndexSign(rdofs[FlipIndexSign(di)]);
}
}
}
@@ -724,7 +724,8 @@ void ParFiniteElementSpace::GetSharedTriangleDofs(
for (int i = 0; i < dofs.Size(); i++)
{
const int di = dofs[i];
dofs[i] = (di >= 0) ? rdofs[di] : -1-rdofs[-1-di];
dofs[i] = di >= 0 ? rdofs[di] :
FlipIndexSign(rdofs[FlipIndexSign(di)]);
}
}
}
@@ -748,7 +749,8 @@ void ParFiniteElementSpace::GetSharedQuadrilateralDofs(
for (int i = 0; i < dofs.Size(); i++)
{
const int di = dofs[i];
dofs[i] = (di >= 0) ? rdofs[di] : -1-rdofs[-1-di];
dofs[i] = (di >= 0) ? rdofs[di] :
FlipIndexSign(rdofs[FlipIndexSign(di)]);
}
}
}
@@ -1488,7 +1490,7 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
GetElementVDofs(my_elems[i], ldofs);
for (int j = 0; j < ldofs.Size(); j++)
{
int ldof = (ldofs[j] >= 0 ? ldofs[j] : -1-ldofs[j]);
int ldof = UnsignIndex(ldofs[j]);
if (ldof_marker[ldof] != fn)
{
@@ -1549,7 +1551,7 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
GetElementVDofs(my_elems[i], ldofs);
for (int j = 0; j < ldofs.Size(); j++)
{
int ldof = (ldofs[j] >= 0 ? ldofs[j] : -1-ldofs[j]);
int ldof = UnsignIndex(ldofs[j]);
if (ldof_marker[ldof] != fn)
{
@@ -1574,14 +1576,15 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
for (int i = 0; i < num_ldofs; i++)
{
int ldof = (ldofs_fn[i] >= 0 ? ldofs_fn[i] : -1-ldofs_fn[i]);
int ldof = UnsignIndex(ldofs_fn[i]);
ldof_marker[ldof] = i;
}
for ( ; j < j_end; j++)
{
int ldof = (send_J[j] >= 0 ? send_J[j] : -1-send_J[j]);
send_J[j] = (send_J[j] >= 0 ? ldof_marker[ldof] : -1-ldof_marker[ldof]);
const int ldof = UnsignIndex(send_J[j]);
send_J[j] = (send_J[j] >= 0 ? ldof_marker[ldof] :
FlipIndexSign(ldof_marker[ldof]));
}
}
@@ -1673,12 +1676,7 @@ void ParFiniteElementSpace::ExchangeFaceNbrData()
{
for (int j_end = face_nbr_ldof.GetI()[fn+1]; j < j_end; j++)
{
int ldof = face_nbr_ldof.GetJ()[j];
if (ldof < 0)
{
ldof = -1-ldof;
}
const int ldof = UnsignIndex(face_nbr_ldof.GetJ()[j]);
face_nbr_glob_dof_map[j] = dof_face_nbr_offsets[fn] + ldof;
}
}
@@ -1722,7 +1720,7 @@ void ParFiniteElementSpace::GetFaceNbrFaceVDofs(int i, Array<int> &vdofs) const
MFEM_ASSERT(Nonconforming() && i >= pmesh->GetNumFaces(), "");
int el1, el2, inf1, inf2;
pmesh->GetFaceElements(i, &el1, &el2);
el2 = -1 - el2;
el2 = FlipIndexSign(el2);
pmesh->GetFaceInfos(i, &inf1, &inf2);
MFEM_ASSERT(0 <= el2 && el2 < face_nbr_element_dof.Size(), "");
const int nd = face_nbr_element_dof.RowSize(el2);
@@ -1738,7 +1736,8 @@ void ParFiniteElementSpace::GetFaceNbrFaceVDofs(int i, Array<int> &vdofs) const
for (int j = 0; j < vdofs.Size(); j++)
{
const int ldof = vdofs[j];
vdofs[j] = (ldof >= 0) ? vol_vdofs[ldof] : -1-vol_vdofs[-1-ldof];
vdofs[j] = (ldof >= 0) ? vol_vdofs[ldof] :
FlipIndexSign(vol_vdofs[FlipIndexSign(ldof)]);
}
}
@@ -2062,8 +2061,8 @@ void ParFiniteElementSpace::GetGhostFaceDofs(const MeshId &face_id,
for (int j = 0; j < ne; j++)
{
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j])
/* */ : (-1 - (first + (-1 - ind[j])));
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j]) :
FlipIndexSign(first + FlipIndexSign(ind[j]));
}
}
else
@@ -2073,8 +2072,8 @@ void ParFiniteElementSpace::GetGhostFaceDofs(const MeshId &face_id,
const int *ind = fec->DofOrderForOrientation(Geometry::SEGMENT, Eo[i]);
for (int j = 0; j < ne; j++)
{
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j])
/* */ : (-1 - (first + (-1 - ind[j])));
dofs[offset++] = (ind[j] >= 0) ? (first + ind[j]) :
FlipIndexSign(first + FlipIndexSign(ind[j]));
}
}
}
@@ -2867,7 +2866,7 @@ void NeighborRowMessage::Encode(int rank)
if (ind && (edof = ind[edof]) < 0)
{
edof = -1 - edof;
edof = FlipIndexSign(edof);
s = -1;
}
@@ -3068,10 +3067,10 @@ void NeighborRowMessage::Decode(int rank)
// If edof arrived with a negative index, flip it, and the scaling.
real_t s = (edof < 0) ? -1.0 : 1.0;
edof = (edof < 0) ? -1 - edof : edof;
edof = UnsignIndex(edof);
if (ind && (edof = ind[edof]) < 0)
{
edof = -1 - edof;
edof = FlipIndexSign(edof);
s *= -1.0;
}
@@ -3122,10 +3121,10 @@ void NeighborRowMessage::Decode(int rank)
// If edof arrived with a negative index, flip it, and the scaling.
s = (edof < 0) ? -1.0 : 1.0;
edof = (edof < 0) ? -1 - edof : edof;
edof = UnsignIndex(edof);
if (ind && (edof = ind[edof]) < 0)
{
edof = -1 - edof;
edof = FlipIndexSign(edof);
s *= -1.0;
}
@@ -4406,12 +4405,9 @@ ParFiniteElementSpace::RebalanceMatrix(int old_ndofs,
{
for (int j = 0; j < dofs.Size(); j++)
{
int row = DofToVDof(dofs[j], vd);
if (row < 0) { row = -1 - row; }
int col = DofToVDof(old_dofs[j], vd, old_ndofs);
if (col < 0) { col = -1 - col; }
const int row = UnsignIndex(DofToVDof(dofs[j], vd));
const int col = UnsignIndex(DofToVDof(old_dofs[j], vd,
old_ndofs));
i_diag[row] = col;
}
}
@@ -4436,9 +4432,7 @@ ParFiniteElementSpace::RebalanceMatrix(int old_ndofs,
{
for (int j = 0; j < dofs.Size(); j++)
{
int row = DofToVDof(dofs[j], vd);
if (row < 0) { row = -1 - row; }
const int row = UnsignIndex(DofToVDof(dofs[j], vd));
if (i_diag[row] == i_diag[row+1]) // diag row empty?
{
i_offd[row] = old_dofs[j + vd * dofs.Size()];
@@ -4547,9 +4541,9 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
{
const Embedding &emb = dtrans.embeddings[k];
int fine_rank = old_ranks[k];
int coarse_rank = (emb.parent < 0) ? (-1 - emb.parent)
: old_pncmesh->ElementRank(emb.parent);
const int fine_rank = old_ranks[k];
const int coarse_rank = (emb.parent < 0) ? FlipIndexSign(emb.parent)
: old_pncmesh->ElementRank(emb.parent);
if (coarse_rank != MyRank && fine_rank == MyRank)
{
@@ -4637,8 +4631,8 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
{
if (!std::isfinite(lR(i, 0))) { continue; }
int r = DofToVDof(dofs[i], vd);
int m = (r >= 0) ? r : (-1 - r);
const int r = DofToVDof(dofs[i], vd);
const int m = UnsignIndex(r);
if (is_dg || !mark[m])
{
@@ -4687,8 +4681,7 @@ ParFiniteElementSpace::ParallelDerefinementMatrix(int old_ndofs,
{
if (!std::isfinite(lR(i, 0))) { continue; }
int r = DofToVDof(dofs[i], vd);
int m = (r >= 0) ? r : (-1 - r);
const int m = UnsignIndex(DofToVDof(dofs[i], vd));
if (is_dg || !mark[m])
{
+2
View File
@@ -483,6 +483,8 @@ public:
const FiniteElement *GetFaceNbrFaceFE(int i) const;
const Array<HYPRE_BigInt> &GetFaceNbrGlobalDofMapArray() { return face_nbr_glob_dof_map; }
const HYPRE_BigInt *GetFaceNbrGlobalDofMap() { return face_nbr_glob_dof_map; }
const Array<HYPRE_BigInt> &GetFaceNbrGlobalDofMapArray() const
{ return face_nbr_glob_dof_map; }
ElementTransformation *GetFaceNbrElementTransformation(int i) const
{ return pmesh->GetFaceNbrElementTransformation(i); }
+33
View File
@@ -1568,6 +1568,39 @@ PLBound ParGridFunction::GetBounds(Vector &lower, Vector &upper,
return plb;
}
std::pair<real_t, real_t> ParGridFunction::EstimateFunctionMinimum(
const int vdim, const PLBound &plb, const int max_depth,
const real_t tol) const
{
std::pair<real_t, real_t> minmax =
GridFunction::EstimateFunctionMinimum(vdim, plb, max_depth, tol);
real_t glob_min_lower = minmax.first;
real_t glob_min_upper = minmax.second;
MPI_Allreduce(MPI_IN_PLACE, &glob_min_lower, 1,
MFEM_MPI_REAL_T, MPI_MIN, pfes->GetComm());
MPI_Allreduce(MPI_IN_PLACE, &glob_min_upper, 1,
MFEM_MPI_REAL_T, MPI_MIN, pfes->GetComm());
return std::make_pair(glob_min_lower, glob_min_upper);
}
std::pair<real_t, real_t> ParGridFunction::EstimateFunctionMaximum(
const int vdim, const PLBound &plb, const int max_depth,
const real_t tol) const
{
std::pair<real_t, real_t> minmax =
GridFunction::EstimateFunctionMaximum(vdim, plb, max_depth, tol);
real_t glob_max_lower = minmax.first;
real_t glob_max_upper = minmax.second;
MPI_Allreduce(MPI_IN_PLACE, &glob_max_lower, 1,
MFEM_MPI_REAL_T, MPI_MAX, pfes->GetComm());
MPI_Allreduce(MPI_IN_PLACE, &glob_max_upper, 1,
MFEM_MPI_REAL_T, MPI_MAX, pfes->GetComm());
return std::make_pair(glob_max_lower, glob_max_upper);
}
} // namespace mfem
#endif // MFEM_USE_MPI
+12
View File
@@ -609,6 +609,18 @@ public:
PLBound GetBounds(Vector &lower, Vector &upper,
const int ref_factor=1, const int vdim=-1) const override;
/** @brief Estimate the GridFunction minimum across all elements. */
std::pair<real_t, real_t> EstimateFunctionMinimum(const int vdim,
const PLBound &plb,
const int max_depth,
const real_t tol) const override;
/** @brief Estimate the GridFunction maximum across all elements. */
std::pair<real_t, real_t> EstimateFunctionMaximum(const int vdim,
const PLBound &plb,
const int max_depth,
const real_t tol) const override;
/** Save the local portion of the ParGridFunction. This differs from the
serial GridFunction::Save in that it takes into account the signs of
the local dofs. */
-7
View File
@@ -994,7 +994,6 @@ void ParNCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
{
if ( face.IsConforming() )
{
interpolations.RegisterFaceConformingInterpolation(face,f_ind);
SetFaceDofsScatterIndices1(face,f_ind);
if ( m==L2FaceValues::DoubleValued )
{
@@ -1010,7 +1009,6 @@ void ParNCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
}
else // Non-conforming face
{
interpolations.RegisterFaceCoarseToFineInterpolation(face,f_ind);
SetFaceDofsScatterIndices1(face,f_ind);
if ( m==L2FaceValues::DoubleValued )
{
@@ -1028,7 +1026,6 @@ void ParNCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
}
else if (type==FaceType::Boundary && face.IsBoundary())
{
interpolations.RegisterFaceConformingInterpolation(face,f_ind);
SetFaceDofsScatterIndices1(face,f_ind);
if ( m==L2FaceValues::DoubleValued )
{
@@ -1046,10 +1043,6 @@ void ParNCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
{
gather_offsets[i] += gather_offsets[i - 1];
}
// Transform the interpolation matrix map into a contiguous memory structure.
interpolations.LinearizeInterpolatorMapIntoVector();
interpolations.InitializeNCInterpConfig();
}
void ParNCL2FaceRestriction::ComputeGatherIndices()
+2 -6
View File
@@ -326,9 +326,7 @@ public:
@param[in] keep_nbr_block When set to true the SparseMatrix will
include the rows (in addition to the columns)
corresponding to face-neighbor dofs. The
default behavior is to disregard those rows.
@warning This method is not implemented yet. */
default behavior is to disregard those rows. */
void FillI(SparseMatrix &mat,
const bool keep_nbr_block = false) const override;
@@ -364,9 +362,7 @@ public:
@param[in] keep_nbr_block When set to true the SparseMatrix will
include the rows (in addition to the columns)
corresponding to face-neighbor dofs. The
default behavior is to disregard those rows.
@warning This method is not implemented yet. */
default behavior is to disregard those rows. */
void FillJAndData(const Vector &fea_data,
SparseMatrix &mat,
const bool keep_nbr_block = false) const override;
+1 -4
View File
@@ -271,10 +271,7 @@ inline void QuadratureFunction::GetValues(
const int s_offset = qspace->Offset(idx);
const int sl_size = qspace->Offset(idx + 1) - s_offset;
// Make the values matrix memory an alias of the quadrature function memory
Memory<real_t> &values_mem = values.GetMemory();
values_mem.Delete();
values_mem.MakeAlias(GetMemory(), vdim*s_offset, vdim*sl_size);
values.SetSize(vdim, sl_size);
values.MakeRef(GetMemory(), vdim*s_offset, vdim, sl_size);
}
inline void QuadratureFunction::GetValues(
+7 -1
View File
@@ -50,7 +50,13 @@ QuadratureInterpolator::DetKernelType
QuadratureInterpolator::DetKernels::Fallback(
int DIM, int SDIM, int D1D, int Q1D)
{
if (DIM == 1) { return internal::quadrature_interpolator::Det1D; }
if (DIM == 1)
{
if (SDIM == 1) { return internal::quadrature_interpolator::Det1D; }
else if (SDIM == 2) { return internal::quadrature_interpolator::Det1DSurface<0,0,2>; }
else if (SDIM == 3) { return internal::quadrature_interpolator::Det1DSurface<0,0,3>; }
else { MFEM_ABORT(""); }
}
else if (DIM == 2 && SDIM == 2) { return internal::quadrature_interpolator::Det2D; }
else if (DIM == 2 && SDIM == 3) { return internal::quadrature_interpolator::Det2DSurface; }
else if (DIM == 3)
+54 -5
View File
@@ -56,6 +56,50 @@ inline void Det1D(const int NE,
});
}
template<int T_D1D = 0, int T_Q1D = 0, int T_SDIM = 3>
inline void Det1DSurface(const int NE,
const real_t *b,
const real_t *g,
const real_t *x,
real_t *y,
const int d1d = 0,
const int q1d = 0,
Vector *d_buff = nullptr)
{
MFEM_CONTRACT_VAR(b);
MFEM_CONTRACT_VAR(d_buff);
const int D1D = T_D1D ? T_D1D : d1d;
const int Q1D = T_Q1D ? T_Q1D : q1d;
const auto G = Reshape(g, Q1D, D1D);
const auto X = Reshape(x, D1D, T_SDIM, NE);
auto Y = Reshape(y, Q1D, NE);
mfem::forall(NE, [=] MFEM_HOST_DEVICE (int e)
{
for (int q = 0; q < Q1D; q++)
{
real_t grad[T_SDIM];
for (int s = 0; s < T_SDIM; s++) { grad[s] = 0.0; }
for (int d = 0; d < D1D; d++)
{
const real_t gval = G(q, d);
for (int s = 0; s < T_SDIM; s++)
{
grad[s] += gval * X(d, s, e);
}
}
real_t norm2 = 0.0;
for (int s = 0; s < T_SDIM; s++)
{
norm2 += grad[s] * grad[s];
}
Y(q, e) = std::sqrt(norm2);
}
});
}
template<int T_D1D = 0, int T_Q1D = 0>
inline void Det2D(const int NE,
const real_t *b,
@@ -290,11 +334,16 @@ template<int DIM, int SDIM, int D1D, int Q1D>
QuadratureInterpolator::DetKernelType
QuadratureInterpolator::DetKernels::Kernel()
{
if (DIM == 1) { return internal::quadrature_interpolator::Det1D; }
else if (DIM == 2 && SDIM == 2) { return internal::quadrature_interpolator::Det2D<D1D, Q1D>; }
else if (DIM == 2 && SDIM == 3) { return internal::quadrature_interpolator::Det2DSurface<D1D, Q1D>; }
else if (DIM == 3) { return internal::quadrature_interpolator::Det3D<D1D, Q1D>; }
else { MFEM_ABORT(""); }
if constexpr (DIM == 1)
{
if constexpr (SDIM == 1) { return internal::quadrature_interpolator::Det1D; }
else if constexpr (SDIM == 2) { return internal::quadrature_interpolator::Det1DSurface<D1D, Q1D, 2>; }
else if constexpr (SDIM == 3) { return internal::quadrature_interpolator::Det1DSurface<D1D, Q1D, 3>; }
}
else if constexpr (DIM == 2 && SDIM == 2) { return internal::quadrature_interpolator::Det2D<D1D, Q1D>; }
else if constexpr (DIM == 2 && SDIM == 3) { return internal::quadrature_interpolator::Det2DSurface<D1D, Q1D>; }
else if constexpr (DIM == 3) { return internal::quadrature_interpolator::Det3D<D1D, Q1D>; }
MFEM_ABORT("");
}
/// @endcond
+4 -4
View File
@@ -203,10 +203,10 @@ template<int DIM, QVectorLayout Q_LAYOUT,
QuadratureInterpolator::TensorEvalKernelType
QuadratureInterpolator::TensorEvalKernels::Kernel()
{
if (DIM == 1) { return internal::quadrature_interpolator::Values1D<Q_LAYOUT>; }
else if (DIM == 2) { return internal::quadrature_interpolator::Values2D<Q_LAYOUT, VDIM, D1D, Q1D, NBZ>; }
else if (DIM == 3) { return internal::quadrature_interpolator::Values3D<Q_LAYOUT, VDIM, D1D, Q1D>; }
else { MFEM_ABORT(""); }
if constexpr (DIM == 1) { return internal::quadrature_interpolator::Values1D<Q_LAYOUT>; }
else if constexpr (DIM == 2) { return internal::quadrature_interpolator::Values2D<Q_LAYOUT, VDIM, D1D, Q1D, NBZ>; }
else if constexpr (DIM == 3) { return internal::quadrature_interpolator::Values3D<Q_LAYOUT, VDIM, D1D, Q1D>; }
MFEM_ABORT("");
}
/// @endcond
+9 -2
View File
@@ -453,8 +453,15 @@ QuadratureInterpolator::TensorEvalHDivKernels::Kernel()
{
using namespace internal::quadrature_interpolator;
static_assert(DIM == 2 || DIM == 3, "only DIM=2 and DIM=3 are implemented!");
if (DIM == 2) { return EvalHDiv2D<Q_LAYOUT, FLAGS, D1D, Q1D>; }
return EvalHDiv3D<Q_LAYOUT, FLAGS, D1D, Q1D>;
if constexpr (DIM == 2)
{
return EvalHDiv2D<Q_LAYOUT, FLAGS, D1D, Q1D>;
}
else if constexpr (DIM == 3)
{
return EvalHDiv3D<Q_LAYOUT, FLAGS, D1D, Q1D>;
}
MFEM_ABORT("only DIM=2 and DIM=3 are implemented!");
}
/// @endcond
+8 -8
View File
@@ -592,10 +592,10 @@ template<int DIM, QVectorLayout Q_LAYOUT, bool GRAD_PHYS, int VDIM, int D1D,
QuadratureInterpolator::GradKernelType
QuadratureInterpolator::GradKernels::Kernel()
{
if (DIM == 1) { return internal::quadrature_interpolator::Derivatives1D<Q_LAYOUT, GRAD_PHYS>; }
else if (DIM == 2) { return internal::quadrature_interpolator::Derivatives2D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D, NBZ>; }
else if (DIM == 3) { return internal::quadrature_interpolator::Derivatives3D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D>; }
else { MFEM_ABORT(""); }
if constexpr (DIM == 1) { return internal::quadrature_interpolator::Derivatives1D<Q_LAYOUT, GRAD_PHYS>; }
else if constexpr (DIM == 2) { return internal::quadrature_interpolator::Derivatives2D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D, NBZ>; }
else if constexpr (DIM == 3) { return internal::quadrature_interpolator::Derivatives3D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, Q1D>; }
MFEM_ABORT("");
}
template<int DIM, QVectorLayout Q_LAYOUT, bool GRAD_PHYS, int VDIM, int D1D,
@@ -603,10 +603,10 @@ template<int DIM, QVectorLayout Q_LAYOUT, bool GRAD_PHYS, int VDIM, int D1D,
QuadratureInterpolator::CollocatedGradKernelType
QuadratureInterpolator::CollocatedGradKernels::Kernel()
{
if (DIM == 1) { return internal::quadrature_interpolator::CollocatedDerivatives1D<Q_LAYOUT, GRAD_PHYS>; }
else if (DIM == 2) { return internal::quadrature_interpolator::CollocatedDerivatives2D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, NBZ>; }
else if (DIM == 3) { return internal::quadrature_interpolator::CollocatedDerivatives3D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D>; }
else { MFEM_ABORT(""); }
if constexpr (DIM == 1) { return internal::quadrature_interpolator::CollocatedDerivatives1D<Q_LAYOUT, GRAD_PHYS>; }
else if constexpr (DIM == 2) { return internal::quadrature_interpolator::CollocatedDerivatives2D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D, NBZ>; }
else if constexpr (DIM == 3) { return internal::quadrature_interpolator::CollocatedDerivatives3D<Q_LAYOUT, GRAD_PHYS, VDIM, D1D>; }
MFEM_ABORT("");
}
/// @endcond
+6 -5
View File
@@ -542,7 +542,8 @@ void QuadratureInterpolator::Mult(const Vector &e_vec,
}
MFEM_ASSERT(!(eval_flags & DETERMINANTS) || dim == vdim ||
(dim == 2 && vdim == 3), "Invalid dimensions for determinants.");
(dim == 2 && vdim == 3) || (dim == 1 && vdim == 2) ||
(dim == 1 && vdim == 3), "Invalid dimensions for determinants.");
MFEM_ASSERT(fespace->GetMesh()->GetNumGeometries(
fespace->GetMesh()->Dimension()) == 1,
"mixed meshes are not supported");
@@ -751,10 +752,10 @@ template <int DIM, int VDIM, int ND, int NQ>
EvalKernel QuadratureInterpolator::EvalKernels::Kernel()
{
using namespace internal::quadrature_interpolator;
if (DIM == 1) { return Eval1D; }
else if (DIM == 2) { return Eval2D<VDIM,ND,NQ>; }
else if (DIM == 3) { return Eval3D<VDIM,ND,NQ>; }
else { MFEM_ABORT(""); }
if constexpr (DIM == 1) { return Eval1D; }
else if constexpr (DIM == 2) { return Eval2D<VDIM,ND,NQ>; }
else if constexpr (DIM == 3) { return Eval3D<VDIM,ND,NQ>; }
MFEM_ABORT("");
}
template <int DIM>
+122 -48
View File
@@ -844,8 +844,6 @@ void ConformingFaceRestriction::ComputeGatherIndices(
gather_offsets[0] = 0;
}
static inline int absdof(int i) { return i < 0 ? -1-i : i; }
void ConformingFaceRestriction::SetFaceDofsScatterIndices(
const Mesh::FaceInformation &face,
const int face_index,
@@ -868,9 +866,9 @@ void ConformingFaceRestriction::SetFaceDofsScatterIndices(
{
const int lex_volume_dof = face_map[face_dof];
const int s_volume_dof = AsConst(vol_dof_map)[lex_volume_dof]; // signed
const int volume_dof = absdof(s_volume_dof);
const int volume_dof = UnsignIndex(s_volume_dof);
const int s_global_dof = elem_map[elem_index*elem_dofs + volume_dof];
const int global_dof = absdof(s_global_dof);
const int global_dof = UnsignIndex(s_global_dof);
const int restriction_dof = face_dofs*face_index + face_dof;
scatter_indices[restriction_dof] = s_global_dof;
++gather_offsets[global_dof + 1];
@@ -897,10 +895,10 @@ void ConformingFaceRestriction::SetFaceDofsGatherIndices(
{
const int lex_volume_dof = face_map[face_dof];
const int s_volume_dof = AsConst(vol_dof_map)[lex_volume_dof];
const int volume_dof = absdof(s_volume_dof);
const int volume_dof = UnsignIndex(s_volume_dof);
const int s_global_dof = elem_map[elem_index*elem_dofs + volume_dof];
const int sgn = (s_global_dof >= 0) ? 1 : -1;
const int global_dof = absdof(s_global_dof);
const int global_dof = UnsignIndex(s_global_dof);
const int restriction_dof = face_dofs*face_index + face_dof;
const int s_restriction_dof = (sgn >= 0) ? restriction_dof : -1 -
restriction_dof;
@@ -1506,12 +1504,12 @@ void L2FaceRestriction::EnsureNormalDerivativeRestriction() const
}
}
InterpolationManager::InterpolationManager(const FiniteElementSpace &fes,
ElementDofOrdering ordering,
InterpolationManager::InterpolationManager(const FiniteElementSpace &fes_,
ElementDofOrdering ordering_,
FaceType type)
: fes(fes),
ordering(ordering),
interp_config( fes.GetNFbyType(type) ),
: fes(fes_),
ordering(ordering_),
interp_config(fes.GetNFbyType(type)),
nc_cpt(0)
{ }
@@ -1536,7 +1534,8 @@ void InterpolationManager::RegisterFaceCoarseToFineInterpolation(
face.element[0].local_face_id +
6*face.element[1].local_face_id +
36*face.element[1].orientation ;
// Unfortunately we can't trust unicity of the ptMat to identify the transformation.
// Unfortunately we can't trust uniqueness of the ptMat to identify the
// transformation.
Key key(ptMat, face_key);
auto itr = interp_map.find(key);
if ( itr == interp_map.end() )
@@ -1583,17 +1582,27 @@ const DenseMatrix* InterpolationManager::GetCoarseToFineInterpolation(
IsoparametricTransformation isotr;
isotr.SetIdentityTransformation(trace_fe->GetGeomType());
isotr.SetPointMat(*ptMat);
DenseMatrix& trans_pt_mat = isotr.GetPointMat();
// PointMatrix needs to be flipped in 2D
if ( trace_fe->GetGeomType()==Geometry::SEGMENT && !is_ghost_slave )
{
std::swap(trans_pt_mat(0,0),trans_pt_mat(0,1));
}
DenseMatrix native_interpolator(face_dofs,face_dofs);
trace_fe->GetLocalInterpolation(isotr, native_interpolator);
if (trace_fe->GetMapType() == FiniteElement::INTEGRAL)
{
// Handle potentially inverted Jacobian matrix
isotr.SetIntPoint(&Geometries.GetCenter(trace_fe->GetGeomType()));
native_interpolator *= (isotr.Weight() >= 0) ? 1.0 : -1.0;
}
const int dim = trace_fe->GetDim()+1;
const int dof1d = trace_fe->GetOrder()+1;
const int orientation = face.element[1].orientation;
int orientation_i = face.element[1].orientation;
const int orientation_j = face.element[1].orientation;
// In 2D, need to flip orientation of the segments`
if (trace_fe->GetGeomType() == Geometry::SEGMENT && !is_ghost_slave)
{
orientation_i = 1;
}
for (int i = 0; i < face_dofs; i++)
{
const int ni = (dof_map.Size()==0) ? i : dof_map[i];
@@ -1602,7 +1611,7 @@ const DenseMatrix* InterpolationManager::GetCoarseToFineInterpolation(
{
// master side is elem 2, so we permute to order dofs as elem 1.
li = PermuteFaceL2(dim, face_id2, face_id1,
orientation, dof1d, li);
orientation_i, dof1d, li);
}
for (int j = 0; j < face_dofs; j++)
{
@@ -1611,7 +1620,7 @@ const DenseMatrix* InterpolationManager::GetCoarseToFineInterpolation(
{
// master side is elem 2, so we permute to order dofs as elem 1.
lj = PermuteFaceL2(dim, face_id2, face_id1,
orientation, dof1d, lj);
orientation_j, dof1d, lj);
}
const int nj = (dof_map.Size()==0) ? j : dof_map[j];
(*interpolator)(li,lj) = native_interpolator(ni,nj);
@@ -1676,7 +1685,7 @@ NCL2FaceRestriction::NCL2FaceRestriction(const FiniteElementSpace &fes,
const L2FaceValues m,
bool build)
: L2FaceRestriction(fes, f_ordering, type, m, false),
interpolations(fes, f_ordering, type)
interpolations(fes.GetInterpolationManager(ordering, type))
{
if (!build) { return; }
x_interp.UseDevice(true);
@@ -2202,14 +2211,6 @@ void NCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
{
PermuteAndSetFaceDofsScatterIndices2(face,f_ind);
}
if ( face.IsConforming() )
{
interpolations.RegisterFaceConformingInterpolation(face,f_ind);
}
else // Non-conforming face
{
interpolations.RegisterFaceCoarseToFineInterpolation(face,f_ind);
}
f_ind++;
}
else if ( type==FaceType::Boundary && face.IsBoundary() )
@@ -2219,7 +2220,6 @@ void NCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
{
SetBoundaryDofsScatterIndices2(face,f_ind);
}
interpolations.RegisterFaceConformingInterpolation(face,f_ind);
f_ind++;
}
}
@@ -2232,10 +2232,6 @@ void NCL2FaceRestriction::ComputeScatterIndicesAndOffsets()
{
gather_offsets[i] += gather_offsets[i - 1];
}
// Transform the interpolation matrix map into a contiguous memory structure.
interpolations.LinearizeInterpolatorMapIntoVector();
interpolations.InitializeNCInterpConfig();
}
void NCL2FaceRestriction::ComputeGatherIndices()
@@ -2278,6 +2274,18 @@ void NCL2FaceRestriction::ComputeGatherIndices()
gather_offsets[0] = 0;
}
static int GetSharedVSize(const FiniteElementSpace &fes)
{
#ifdef MFEM_USE_MPI
if (auto pfes = dynamic_cast<const ParFiniteElementSpace*>(&fes))
{
const_cast<ParFiniteElementSpace*>(pfes)->ExchangeFaceNbrData();
return pfes->GetFaceNbrVSize();
}
#endif
return 0;
}
L2InterfaceFaceRestriction::L2InterfaceFaceRestriction(
const FiniteElementSpace& fes_,
const ElementDofOrdering ordering_,
@@ -2288,25 +2296,54 @@ L2InterfaceFaceRestriction::L2InterfaceFaceRestriction(
nfaces(fes.GetNFbyType(type)),
vdim(fes.GetVDim()),
byvdim(fes.GetOrdering() == Ordering::byVDIM),
face_dofs(nfaces > 0 ? fes.GetFaceElement(0)->GetDof() : 0),
face_dofs(fes.GetTypicalTraceElement()->GetDof()),
nfdofs(face_dofs*nfaces),
ndofs(fes.GetNDofs())
ndofs(fes.GetNDofs()),
nsdofs(GetSharedVSize(fes))
{
height = nfdofs;
width = ndofs;
#ifdef MFEM_USE_MPI
auto pfes = dynamic_cast<const ParFiniteElementSpace*>(&fes);
#endif
const Table &face2dof = fes.GetFaceToDofTable();
const Mesh &mesh = *fes.GetMesh();
int face_idx = 0;
gather_map.SetSize(nfdofs);
for (int f = 0; f < mesh.GetNumFaces(); ++f)
scatter_map.SetSize(nfdofs);
gather_map.SetSize(ndofs + nsdofs);
gather_map = -1;
Array<int> dofs;
for (int f = 0; f < mesh.GetNumFacesWithGhost(); ++f)
{
Mesh::FaceInformation face = mesh.GetFaceInformation(f);
if (!face.IsOfFaceType(type)) { continue; }
for (int i = 0; i < face_dofs; ++i)
if (!face.IsOfFaceType(type) || face.IsNonconformingCoarse()) { continue; }
if (f < mesh.GetNumFaces())
{
gather_map[i + face_idx*face_dofs] = face2dof.GetJ()[i + f*face_dofs];
// Local face
face2dof.GetRow(f, dofs);
for (int i = 0; i < face_dofs; ++i)
{
scatter_map[i + face_idx*face_dofs] = dofs[i];
gather_map[dofs[i]] = i + face_idx*face_dofs;
}
}
else
{
// Shared (non-conforming) ghost face
#ifdef MFEM_USE_MPI
MFEM_ASSERT(pfes != nullptr, "");
pfes->GetFaceNbrFaceVDofs(f, dofs);
for (int i = 0; i < face_dofs; ++i)
{
scatter_map[i + face_idx*face_dofs] = ndofs + dofs[i];
gather_map[ndofs + dofs[i]] = i + face_idx*face_dofs;
}
#endif
}
++face_idx;
}
@@ -2314,13 +2351,19 @@ L2InterfaceFaceRestriction::L2InterfaceFaceRestriction(
void L2InterfaceFaceRestriction::Mult(const Vector &x, Vector &y) const
{
const int NDOFS = ndofs;
const int nd = face_dofs;
const int nf = nfaces;
const int vd = vdim;
const bool t = byvdim;
const int *map = gather_map.Read();
const int *map = scatter_map.Read();
Vector face_nbr_data = GetLVectorFaceNbrData(fes, x, type);
MFEM_ASSERT(face_nbr_data.Size() / vd == nsdofs, "");
const auto d_x = Reshape(x.Read(), t?vd:ndofs, t?ndofs:vd);
const auto d_x_shared = Reshape(face_nbr_data.Read(),
t?vd:nsdofs, t?nsdofs:vd);
auto d_y = Reshape(y.Write(), nd, vd, nf);
mfem::forall(nd*nf, [=] MFEM_HOST_DEVICE (int i)
@@ -2328,7 +2371,8 @@ void L2InterfaceFaceRestriction::Mult(const Vector &x, Vector &y) const
const int j = map[i];
for (int c = 0; c < vd; ++c)
{
d_y(i % nd, c, i / nd) = d_x(t?c:j, t?j:c);
if (j < NDOFS) { d_y(i % nd, c, i / nd) = d_x(t?c:j, t?j:c); }
else { d_y(i % nd, c, i / nd) = d_x_shared(t?c:(j-NDOFS), t?(j-NDOFS):c); }
}
});
}
@@ -2343,15 +2387,39 @@ void L2InterfaceFaceRestriction::AddMultTranspose(
const int *map = gather_map.Read();
const auto d_x = Reshape(x.Read(), nd, vd, nf);
auto d_y = Reshape(y.Write(), t?vd:ndofs, t?ndofs:vd);
auto d_y = Reshape(y.ReadWrite(), t?vd:ndofs, t?ndofs:vd);
mfem::forall(ndofs, [=] MFEM_HOST_DEVICE (int i) { d_y[i] = 0.0; });
mfem::forall(nd*nf, [=] MFEM_HOST_DEVICE (int i)
mfem::forall(ndofs, [=] MFEM_HOST_DEVICE (int i)
{
const int j = map[i];
if (j < 0) { return; }
for (int c = 0; c < vd; ++c)
{
d_y(t?c:j, t?j:c) = d_x(i % nd, c, i / nd);
d_y(t?c:i, t?i:c) += a*d_x(j % nd, c, j / nd);
}
});
}
void L2InterfaceFaceRestriction::MultTransposeShared(
const Vector &x, Vector &y) const
{
const int nd = face_dofs;
const int nf = nfaces;
const int vd = vdim;
const bool t = byvdim;
const int *map = gather_map.Read();
const auto d_x = Reshape(x.Read(), nd, vd, nf);
auto d_y = Reshape(y.Write(), t?vd:(ndofs+nsdofs), t?(ndofs+nsdofs):vd);
y = 0.0;
mfem::forall(ndofs + nsdofs, [=] MFEM_HOST_DEVICE (int i)
{
const int j = map[i];
if (j < 0) { return; }
for (int c = 0; c < vd; ++c)
{
d_y(t?c:i, t?i:c) = d_x(j % nd, c, j / nd);
}
});
}
@@ -2361,6 +2429,11 @@ const Array<int> &L2InterfaceFaceRestriction::GatherMap() const
return gather_map;
}
const Array<int> &L2InterfaceFaceRestriction::ScatterMap() const
{
return scatter_map;
}
Vector GetLVectorFaceNbrData(
const FiniteElementSpace &fes, const Vector &x, FaceType ftype)
{
@@ -2382,6 +2455,7 @@ Vector GetLVectorFaceNbrData(
{
ParGridFunction gf(pfes, const_cast<Vector&>(x));
gf.ExchangeFaceNbrData();
x.SyncMemory(gf);
return std::move(gf.FaceNbrData());
}
}
+26 -14
View File
@@ -812,13 +812,12 @@ protected:
PointMatrix and a local face identifier. */
using Key = std::pair<const DenseMatrix*,int>;
/// The temporary map used to store the different interpolators.
using Map = std::map<Key, std::pair<int,const DenseMatrix*>>;
using Map =
std::unordered_map<Key, std::pair<int,const DenseMatrix*>, PairHasher>;
Map interp_map; // The temporary map that stores the interpolators.
public:
InterpolationManager() = delete;
/** @brief main constructor.
/** @brief Constructor.
@param[in] fes The FiniteElementSpace on which this operates
@param[in] ordering Request a specific element ordering.
@@ -909,7 +908,7 @@ private:
class NCL2FaceRestriction : virtual public L2FaceRestriction
{
protected:
InterpolationManager interpolations;
const InterpolationManager &interpolations;
mutable Vector x_interp;
/** @brief Constructs an NCL2FaceRestriction, this is a specialization of a
@@ -996,9 +995,7 @@ public:
@param[in] keep_nbr_block When set to true the SparseMatrix will
include the rows (in addition to the columns)
corresponding to face-neighbor dofs. The
default behavior is to disregard those rows.
@warning This method is not implemented yet. */
default behavior is to disregard those rows. */
void FillI(SparseMatrix &mat,
const bool keep_nbr_block = false) const override;
@@ -1016,9 +1013,7 @@ public:
@param[in] keep_nbr_block When set to true the SparseMatrix will
include the rows (in addition to the columns)
corresponding to face-neighbor dofs. The
default behavior is to disregard those rows.
@warning This method is not implemented yet. */
default behavior is to disregard those rows. */
void FillJAndData(const Vector &fea_data,
SparseMatrix &mat,
const bool keep_nbr_block = false) const override;
@@ -1036,9 +1031,7 @@ public:
added the face contributions.
The format is: dofs x dofs x ne, where dofs is the
number of dofs per element and ne the number of
elements.
@warning This method is not implemented yet. */
elements. */
void AddFaceMatricesToElementMatrices(const Vector &fea_data,
Vector &ea_data) const override;
@@ -1130,7 +1123,9 @@ protected:
const int face_dofs; ///< Number of dofs on each face
const int nfdofs; ///< Total number of dofs on the faces (E-vector size)
const int ndofs; ///< Number of dofs in the space (L-vector size)
const int nsdofs; ///< Number of shared face neighbor (ghost) dofs
Array<int> gather_map; ///< Gather map
Array<int> scatter_map; ///< Scatter map
public:
/** @brief Constructs an L2InterfaceFaceRestriction.
@@ -1168,7 +1163,24 @@ public:
void AddMultTranspose(const Vector &x, Vector &y,
const real_t a = 1.0) const override;
/// @brief Gather degrees of freedom, from face E-vector to L-vector and
/// shared (ghost) DOFs.
///
/// @param[in] x The face E-Vector degrees of freedom with size
/// (face_dofs, vdim, nf), where nf is the number of
/// interior or boundary faces requested by @a type in the
/// constructor. The face_dofs should be ordered according
/// to the given ElementDofOrdering
/// @param[out] y Vector of length vsize + face neighbor vsize
void MultTransposeShared(const Vector &x, Vector &y) const;
const Array<int> &GatherMap() const override;
/// @brief Return the low-level mapping from L-dofs to E-dofs.
///
/// L-dofs that do not correspond to an E-dof (e.g. that lie on a face of a
/// different type) are given index -1.
const Array<int> &ScatterMap() const;
};
/** @brief Convert a dof face index from Native ordering to lexicographic
+5 -2
View File
@@ -4102,8 +4102,11 @@ void TMOP_Integrator::GetSurfaceFittingErrors(const Vector &d_loc,
#ifdef MFEM_USE_MPI
// Don't count the overlapping DOFs in parallel.
// The pfes might be ordered byVDIM, while the loop goes consecutively.
const int dof_i = pfes->DofToVDof(i, 0);
if (parallel && pfes->GetLocalTDofNumber(dof_i) < 0) { continue; }
if (parallel)
{
const int dof_i = pfes->DofToVDof(i, 0);
if (pfes->GetLocalTDofNumber(dof_i) < 0) { continue; }
}
#endif
dof_cnt++;
+31 -12
View File
@@ -333,6 +333,12 @@ void L2ProjectionGridTransfer::L2Projection::MixedMassEA(
int nel_ho = mesh_ho->GetNE();
int nel_lor = mesh_lor->GetNE();
if (nel_ho == 0)
{
M_LH.SetSize(0);
return;
}
const CoarseFineTransformations& cf_tr = mesh_lor->GetRefinementTransforms();
int nref_max = 0;
@@ -831,11 +837,17 @@ void L2ProjectionGridTransfer::L2ProjectionL2Space::Mult(
void L2ProjectionGridTransfer::L2ProjectionL2Space::EAMult(
const Vector &x, Vector &y) const
{
const int nel_ho = fes_ho.GetMesh()->GetNE();
if (nel_ho == 0)
{
return;
}
const int iho = 0;
const int nref = ho2lor.RowSize(iho);
const int ndof_ho = fes_ho.GetFE(iho)->GetDof();
const int ndof_lor = fes_lor.GetFE(ho2lor.GetRow(iho)[0])->GetDof();
const int nel_ho = fes_ho.GetMesh()->GetNE();
DenseTensor R_dt;
R_dt.NewMemoryAndSize(R.GetMemory(), ndof_lor*nref, ndof_ho, nel_ho, false);
@@ -887,11 +899,17 @@ void L2ProjectionGridTransfer::L2ProjectionL2Space::MultTranspose(
void L2ProjectionGridTransfer::L2ProjectionL2Space::EAMultTranspose(
const Vector &x, Vector &y) const
{
const int nel_ho = fes_ho.GetMesh()->GetNE();
if (nel_ho == 0)
{
return;
}
const int iho = 0;
const int nref = ho2lor.RowSize(iho);
const int ndof_ho = fes_ho.GetFE(iho)->GetDof();
const int ndof_lor = fes_lor.GetFE(ho2lor.GetRow(iho)[0])->GetDof();
const int nel_ho = fes_ho.GetMesh()->GetNE();
DenseTensor R_dt;
R_dt.NewMemoryAndSize(R.GetMemory(), ndof_lor*nref, ndof_ho, nel_ho, false);
@@ -901,7 +919,6 @@ void L2ProjectionGridTransfer::L2ProjectionL2Space::EAMultTranspose(
void L2ProjectionGridTransfer::L2ProjectionL2Space::Prolongate(
const Vector &x, Vector &y) const
{
if (fes_ho.GetNE() == 0) { return; }
if (use_ea)
@@ -960,14 +977,13 @@ void L2ProjectionGridTransfer::L2ProjectionL2Space::EAProlongate(
void L2ProjectionGridTransfer::L2ProjectionL2Space::ProlongateTranspose(
const Vector &x, Vector &y) const
{
if (fes_ho.GetNE() == 0) { return; }
if (use_ea)
{
return EAProlongateTranspose(x,y);
}
if (fes_ho.GetNE() == 0) { return; }
MFEM_VERIFY(P.Size() > 0, "Prolongation not supported for these spaces.")
int vdim = fes_ho.GetVDim();
Array<int> vdofs;
@@ -1244,13 +1260,6 @@ void L2ProjectionGridTransfer::L2ProjectionH1Space::EAL2ProjectionH1Space
int ndof_ho = pfes_ho.GetNDofs();
int ndof_lor = pfes_lor.GetNDofs();
// If the local mesh is empty, skip all computations
if (nel_ho == 0)
{
return;
}
const CoarseFineTransformations& cf_tr = mesh_lor->GetRefinementTransforms();
int nref_max = 0;
@@ -1860,6 +1869,11 @@ L2ProjectionGridTransfer::H1SpaceMixedMassOperator::H1SpaceMixedMassOperator(
void L2ProjectionGridTransfer::H1SpaceMixedMassOperator::Mult(const Vector &x,
Vector &y) const
{
if (fes_ho->GetNE() == 0)
{
return;
}
const Operator* elem_restrict_ho = fes_ho->GetElementRestriction(
ElementDofOrdering::NATIVE);
const Operator* elem_restrict_lor = fes_lor->GetElementRestriction(
@@ -1906,6 +1920,11 @@ void L2ProjectionGridTransfer::H1SpaceMixedMassOperator::Mult(const Vector &x,
void L2ProjectionGridTransfer::H1SpaceMixedMassOperator::MultTranspose(
const Vector &x, Vector &y) const
{
if (fes_ho->GetNE() == 0)
{
return;
}
const Operator* elem_restrict_ho = fes_ho->GetElementRestriction(
ElementDofOrdering::NATIVE);
const Operator* elem_restrict_lor = fes_lor->GetElementRestriction(
+2
View File
@@ -18,6 +18,7 @@ list(APPEND SRCS
gecko.cpp
globals.cpp
hash.cpp
hash_util.cpp
isockstream.cpp
mem_manager.cpp
occa.cpp
@@ -46,6 +47,7 @@ list(APPEND HDRS
globals.hpp
zstr.hpp
hash.hpp
hash_util.hpp
isockstream.hpp
kdtree.hpp
mem_alloc.hpp
+24 -1
View File
@@ -114,10 +114,22 @@ public:
Array<T> &operator=(const Array<T> &src) { src.Copy(*this); return *this; }
/// Move assignment operator
/** If *this is a non-owning view (e.g., from MakeRef()), the data is copied
so that the base is also modified. */
Array<T> &operator=(Array<T> &&src)
{
if (this == &src) { return *this; }
Swap(src); // Swap does not use move assignment!
// If *this is a non-owning view (alias), and its capacity is sufficient
// to contain src, then copy into *this so that the alias's base memory is
// modified.
if (!OwnsData() && Capacity() >= src.Size())
{
*this = src; // Copy assignment.
}
else
{
Swap(src); // Swap the pointers only.
}
src.DeleteAll();
return *this;
}
@@ -251,6 +263,9 @@ public:
/// Make this Array a reference to 'master'.
inline void MakeRef(const Array &master);
/// Make this Array a reference to the given sub-Memory of @a base.
inline void MakeRef(Memory<T> &base, int offset, int size_);
/// Reset the Array to use the given external Memory @a mem and size @a s.
/** If @a own_mem is false, the Array will not own any of the pointers of
@a mem.
@@ -1073,6 +1088,14 @@ inline void Array<T>::MakeRef(const Array &master)
data.MakeAlias(master.GetMemory(), 0, size);
}
template <class T>
inline void Array<T>::MakeRef(Memory<T> &base, int offset, int size_)
{
data.Delete();
size = size_;
data.MakeAlias(base, offset, size_);
}
template <class T>
inline void Array<T>::NewMemoryAndSize(
const Memory<T> &mem, int s, bool own_mem)
+2
View File
@@ -44,6 +44,7 @@
#endif
#if !defined(MFEM_USE_CUDA_OR_HIP)
constexpr bool mfem_use_gpu = false;
#define MFEM_DEVICE
#define MFEM_HOST
#define MFEM_LAMBDA
@@ -52,6 +53,7 @@
#define MFEM_DEVICE_SYNC
// MFEM_STREAM_SYNC is used for UVM and MPI GPU-Aware kernels
#define MFEM_STREAM_SYNC
#define MFEM_LAUNCH_BOUNDS(...)
#endif
#if !((defined(MFEM_USE_CUDA) && defined(__CUDA_ARCH__)) || \
+2
View File
@@ -20,9 +20,11 @@
#if defined(MFEM_USE_CUDA) && defined(__CUDACC__)
#define MFEM_USE_CUDA_OR_HIP
constexpr bool mfem_use_gpu = true;
#define MFEM_DEVICE __device__
#define MFEM_HOST __host__
#define MFEM_LAMBDA __host__
#define MFEM_LAUNCH_BOUNDS __launch_bounds__
// #define MFEM_HOST_DEVICE __host__ __device__ // defined in config/config.hpp
#define MFEM_DEVICE_SYNC MFEM_GPU_CHECK(cudaDeviceSynchronize())
#define MFEM_STREAM_SYNC MFEM_GPU_CHECK(cudaStreamSynchronize(0))
+207 -44
View File
@@ -295,11 +295,12 @@ using hip_threads_z =
#endif
#if defined(MFEM_USE_RAJA) && defined(RAJA_ENABLE_CUDA) && defined(__CUDACC__)
template <const int BLOCKS = MFEM_CUDA_BLOCKS, typename DBODY>
template <typename DBODY>
void RajaCuWrap1D(const int N, DBODY &&d_body)
{
//true denotes asynchronous kernel
RAJA::forall<RAJA::cuda_exec<BLOCKS,true>>(RAJA::RangeSegment(0,N),d_body);
RAJA::forall<RAJA::cuda_exec<MFEM_CUDA_BLOCKS,true>>(RAJA::RangeSegment(0,N),
d_body);
}
template <typename DBODY>
@@ -362,18 +363,18 @@ struct RajaCuWrap;
template <>
struct RajaCuWrap<1>
{
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
RajaCuWrap1D<BLCK>(N, d_body);
RajaCuWrap1D(N, d_body);
}
};
template <>
struct RajaCuWrap<2>
{
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -384,7 +385,7 @@ struct RajaCuWrap<2>
template <>
struct RajaCuWrap<3>
{
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -395,11 +396,12 @@ struct RajaCuWrap<3>
#endif
#if defined(MFEM_USE_RAJA) && defined(RAJA_ENABLE_HIP) && defined(__HIP__)
template <const int BLOCKS = MFEM_HIP_BLOCKS, typename DBODY>
template <typename DBODY>
void RajaHipWrap1D(const int N, DBODY &&d_body)
{
//true denotes asynchronous kernel
RAJA::forall<RAJA::hip_exec<BLOCKS,true>>(RAJA::RangeSegment(0,N),d_body);
RAJA::forall<RAJA::hip_exec<MFEM_HIP_BLOCKS,true>>(RAJA::RangeSegment(0,N),
d_body);
}
template <typename DBODY>
@@ -462,18 +464,18 @@ struct RajaHipWrap;
template <>
struct RajaHipWrap<1>
{
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
RajaHipWrap1D<BLCK>(N, d_body);
RajaHipWrap1D(N, d_body);
}
};
template <>
struct RajaHipWrap<2>
{
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -484,7 +486,7 @@ struct RajaHipWrap<2>
template <>
struct RajaHipWrap<3>
{
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -584,12 +586,31 @@ void CuKernel2D(const int N, BODY body)
body(k);
}
// __launch_bounds__ second argument is omitted to get the default behavior
template <int MAX_THREADS_PER_BLOCK, typename BODY>
__global__
MFEM_LAUNCH_BOUNDS(MAX_THREADS_PER_BLOCK)
static void CuKernel2DLaunchBounds(const int N, BODY body)
{
const int k = blockIdx.x*blockDim.z + threadIdx.z;
if (k >= N) { return; }
body(k);
}
template <typename BODY> __global__ static
void CuKernel3D(const int N, BODY body)
{
for (int k = blockIdx.x; k < N; k += gridDim.x) { body(k); }
}
template <int MAX_THREADS_PER_BLOCK, typename BODY>
__global__
MFEM_LAUNCH_BOUNDS(MAX_THREADS_PER_BLOCK)
static void CuKernel3DLaunchBounds(const int N, BODY body)
{
for (int k = blockIdx.x; k < N; k += gridDim.x) { body(k); }
}
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
void CuWrap1D(const int N, DBODY &&d_body)
{
@@ -604,6 +625,8 @@ void CuWrap2D(const int N, DBODY &&d_body,
const int X, const int Y, const int BZ)
{
if (N==0) { return; }
// required for optimized GCC/NVCC builds to prevent runtime
// ODR/linkage violations of inlined templated kernel helpers
MFEM_VERIFY(BZ>0, "");
const int GRID = (N+BZ-1)/BZ;
const dim3 BLCK(X,Y,BZ);
@@ -611,6 +634,19 @@ void CuWrap2D(const int N, DBODY &&d_body,
MFEM_GPU_CHECK(cudaGetLastError());
}
template <int MAX_THREADS_PER_BLOCK, typename DBODY>
void CuWrap2DLaunchBounds(const int N, DBODY &&d_body,
const int X, const int Y, const int BZ)
{
if (N==0) { return; }
MFEM_VERIFY(BZ>0, "");
const int GRID = (N+BZ-1)/BZ;
const dim3 BLCK(X,Y,BZ);
static_assert(MAX_THREADS_PER_BLOCK > 0);
CuKernel2DLaunchBounds<MAX_THREADS_PER_BLOCK><<<GRID,BLCK>>>(N, d_body);
MFEM_GPU_CHECK(cudaGetLastError());
}
template <typename DBODY>
void CuWrap3D(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
@@ -622,24 +658,35 @@ void CuWrap3D(const int N, DBODY &&d_body,
MFEM_GPU_CHECK(cudaGetLastError());
}
template <int Dim>
struct CuWrap;
template <>
struct CuWrap<1>
template <int MAX_THREADS_PER_BLOCK, typename DBODY>
void CuWrap3DLaunchBounds(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
if (N==0) { return; }
const int GRID = G == 0 ? N : G;
const dim3 BLCK(X,Y,Z);
static_assert(MAX_THREADS_PER_BLOCK > 0);
CuKernel3DLaunchBounds<MAX_THREADS_PER_BLOCK><<<GRID, BLCK>>>(N, d_body);
MFEM_GPU_CHECK(cudaGetLastError());
}
template <int Dim, int MAX_THREADS_PER_BLOCK> struct CuWrap;
template <int MAX_THREADS_PER_BLOCK>
struct CuWrap<1, MAX_THREADS_PER_BLOCK>
{
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
CuWrap1D<BLCK>(N, d_body);
CuWrap1D<MFEM_CUDA_BLOCKS>(N, d_body);
}
};
template <>
struct CuWrap<2>
struct CuWrap<2, 0>
{
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -647,10 +694,22 @@ struct CuWrap<2>
}
};
template <>
struct CuWrap<3>
template <int MAX_THREADS_PER_BLOCK>
struct CuWrap<2, MAX_THREADS_PER_BLOCK>
{
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
static_assert(MAX_THREADS_PER_BLOCK > 0);
CuWrap2DLaunchBounds<MAX_THREADS_PER_BLOCK>(N, d_body, X, Y, Z);
}
};
template <>
struct CuWrap<3, 0>
{
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -658,6 +717,17 @@ struct CuWrap<3>
}
};
template <int MAX_THREADS_PER_BLOCK>
struct CuWrap<3, MAX_THREADS_PER_BLOCK>
{
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
CuWrap3DLaunchBounds<MAX_THREADS_PER_BLOCK>(N, d_body, X, Y, Z, G);
}
};
#endif // defined(MFEM_USE_CUDA) && defined(__CUDACC__)
@@ -680,13 +750,31 @@ void HipKernel2D(const int N, BODY body)
body(k);
}
template <int MAX_THREADS_PER_BLOCK, typename BODY>
__global__
MFEM_LAUNCH_BOUNDS(MAX_THREADS_PER_BLOCK)
static void HipKernel2DLaunchBounds(const int N, BODY body)
{
const int k = hipBlockIdx_x*hipBlockDim_z + hipThreadIdx_z;
if (k >= N) { return; }
body(k);
}
template <typename BODY> __global__ static
void HipKernel3D(const int N, BODY body)
{
for (int k = hipBlockIdx_x; k < N; k += hipGridDim_x) { body(k); }
}
template <const int BLCK = MFEM_HIP_BLOCKS, typename DBODY>
template <int MAX_THREADS_PER_BLOCK, typename BODY>
__global__
MFEM_LAUNCH_BOUNDS(MAX_THREADS_PER_BLOCK)
static void HipKernel3DLaunchBounds(const int N, BODY body)
{
for (int k = hipBlockIdx_x; k < N; k += hipGridDim_x) { body(k); }
}
template <int BLCK = MFEM_HIP_BLOCKS, typename DBODY>
void HipWrap1D(const int N, DBODY &&d_body)
{
if (N==0) { return; }
@@ -700,12 +788,27 @@ void HipWrap2D(const int N, DBODY &&d_body,
const int X, const int Y, const int BZ)
{
if (N==0) { return; }
MFEM_VERIFY(BZ>0, "");
const int GRID = (N+BZ-1)/BZ;
const dim3 BLCK(X,Y,BZ);
hipLaunchKernelGGL(HipKernel2D,GRID,BLCK,0,nullptr,N,d_body);
MFEM_GPU_CHECK(hipGetLastError());
}
template <int MAX_THREADS_PER_BLOCK, typename DBODY>
void HipWrap2DLaunchBounds(const int N, DBODY &&d_body,
const int X, const int Y, const int BZ)
{
if (N==0) { return; }
MFEM_VERIFY(BZ>0, "");
const int GRID = (N+BZ-1)/BZ;
const dim3 BLCK(X,Y,BZ);
static_assert(MAX_THREADS_PER_BLOCK > 0);
HipKernel2DLaunchBounds<MAX_THREADS_PER_BLOCK><<<dim3(GRID), dim3(BLCK), 0, 0>>>
(N, d_body);
MFEM_GPU_CHECK(hipGetLastError());
}
template <typename DBODY>
void HipWrap3D(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
@@ -717,24 +820,36 @@ void HipWrap3D(const int N, DBODY &&d_body,
MFEM_GPU_CHECK(hipGetLastError());
}
template <int Dim>
struct HipWrap;
template <>
struct HipWrap<1>
template <int MAX_THREADS_PER_BLOCK, typename DBODY>
void HipWrap3DLaunchBounds(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
if (N==0) { return; }
const int GRID = G == 0 ? N : G;
const dim3 BLCK(X,Y,Z);
static_assert(MAX_THREADS_PER_BLOCK > 0);
HipKernel3DLaunchBounds<MAX_THREADS_PER_BLOCK><<<dim3(GRID), dim3(BLCK), 0, 0>>>
(N, d_body);
MFEM_GPU_CHECK(hipGetLastError());
}
template <int Dim, int MAX_THREADS_PER_BLOCK> struct HipWrap;
template <int MAX_THREADS_PER_BLOCK>
struct HipWrap<1, MAX_THREADS_PER_BLOCK>
{
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
HipWrap1D<BLCK>(N, d_body);
HipWrap1D<MFEM_HIP_BLOCKS>(N, d_body);
}
};
template <>
struct HipWrap<2>
struct HipWrap<2, 0>
{
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -742,10 +857,21 @@ struct HipWrap<2>
}
};
template <>
struct HipWrap<3>
template <int MAX_THREADS_PER_BLOCK>
struct HipWrap<2, MAX_THREADS_PER_BLOCK>
{
template <const int BLCK = MFEM_CUDA_BLOCKS, typename DBODY>
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
HipWrap2DLaunchBounds<MAX_THREADS_PER_BLOCK>(N, d_body, X, Y, Z);
}
};
template <>
struct HipWrap<3, 0>
{
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
@@ -753,11 +879,24 @@ struct HipWrap<3>
}
};
template <int MAX_THREADS_PER_BLOCK>
struct HipWrap<3, MAX_THREADS_PER_BLOCK>
{
template <typename DBODY>
static void run(const int N, DBODY &&d_body,
const int X, const int Y, const int Z, const int G)
{
HipWrap3DLaunchBounds<MAX_THREADS_PER_BLOCK>(N, d_body, X, Y, Z, G);
}
};
#endif // defined(MFEM_USE_HIP) && defined(__HIP__)
/// The forall kernel body wrapper
template <const int DIM, typename d_lambda, typename h_lambda>
///////////////////////////////////////////////////////////////////////////////
/// Forall host & device kernel dispatch
template <int DIM, int MAX_THREADS_PER_BLOCK = 0,
typename d_lambda, typename h_lambda>
inline void ForallWrap(const bool use_dev, const int N,
d_lambda &&d_body, h_lambda &&h_body,
const int X=0, const int Y=0, const int Z=0,
@@ -790,7 +929,7 @@ inline void ForallWrap(const bool use_dev, const int N,
// If Backend::CUDA is allowed, use it
if (Device::Allows(Backend::CUDA))
{
return CuWrap<DIM>::run(N, d_body, X, Y, Z, G);
return CuWrap<DIM, MAX_THREADS_PER_BLOCK>::run(N, d_body, X, Y, Z, G);
}
#endif
@@ -798,7 +937,7 @@ inline void ForallWrap(const bool use_dev, const int N,
// If Backend::HIP is allowed, use it
if (Device::Allows(Backend::HIP))
{
return HipWrap<DIM>::run(N, d_body, X, Y, Z, G);
return HipWrap<DIM, MAX_THREADS_PER_BLOCK>::run(N, d_body, X, Y, Z, G);
}
#endif
@@ -827,7 +966,9 @@ backend_cpu:
for (int k = 0; k < N; k++) { h_body(k); }
}
template <const int DIM, typename lambda>
///////////////////////////////////////////////////////////////////////////////
/// Forall host & device kernel wrappers
template <int DIM, typename lambda>
inline void ForallWrap(const bool use_dev, const int N, lambda &&body,
const int X=0, const int Y=0, const int Z=0,
const int G=0)
@@ -835,6 +976,16 @@ inline void ForallWrap(const bool use_dev, const int N, lambda &&body,
ForallWrap<DIM>(use_dev, N, body, body, X, Y, Z, G);
}
template <int DIM, int MAX_THREADS_PER_BLOCK, typename lambda>
inline void ForallWrap(const bool use_dev, const int N, lambda &&body,
const int X=0, const int Y=0, const int Z=0,
const int G=0)
{
ForallWrap<DIM, MAX_THREADS_PER_BLOCK>(use_dev, N, body, body, X, Y, Z, G);
}
///////////////////////////////////////////////////////////////////////////////
// forall interfaces
template<typename lambda>
inline void forall(int N, lambda &&body) { ForallWrap<1>(true, N, body); }
@@ -843,7 +994,7 @@ inline void forall(int Nx, int Ny, lambda &&body)
{
if (Device::Allows(Backend::DEVICE_MASK))
{
forall(Nx * Ny, [=] MFEM_HOST_DEVICE(int idx)
mfem::forall(Nx * Ny, [=] MFEM_HOST_DEVICE(int idx)
{
int j = idx / Nx;
int i = idx % Nx;
@@ -879,7 +1030,7 @@ inline void forall(int Nx, int Ny, int Nz, lambda &&body)
{
if (Device::Allows(Backend::DEVICE_MASK))
{
forall(Nx * Ny * Nz, [=] MFEM_HOST_DEVICE(int idx)
mfem::forall(Nx * Ny * Nz, [=] MFEM_HOST_DEVICE(int idx)
{
int i = idx % Nx;
int j = idx / Nx;
@@ -927,6 +1078,12 @@ inline void forall_2D(int N, int X, int Y, lambda &&body)
ForallWrap<2>(true, N, body, X, Y, 1);
}
template<int MAX_THREADS_PER_BLOCK, typename lambda>
inline void forall_2D(int N, int X, int Y, lambda &&body)
{
ForallWrap<2, MAX_THREADS_PER_BLOCK>(true, N, body, X, Y, 1);
}
template<typename lambda>
inline void forall_2D_batch(int N, int X, int Y, int BZ, lambda &&body)
{
@@ -939,6 +1096,12 @@ inline void forall_3D(int N, int X, int Y, int Z, lambda &&body)
ForallWrap<3>(true, N, body, X, Y, Z, 0);
}
template<int MAX_THREADS_PER_BLOCK, typename lambda>
inline void forall_3D(int N, int X, int Y, int Z, lambda &&body)
{
ForallWrap<3, MAX_THREADS_PER_BLOCK>(true, N, body, X, Y, Z, 0);
}
template<typename lambda>
inline void forall_3D_grid(int N, int X, int Y, int Z, int G, lambda &&body)
{
+4
View File
@@ -113,6 +113,10 @@ void SetGlobalMPI_Comm(MPI_Comm comm);
/// to suppress the warning.
const char* GetEnv(const char* name);
/// Signed indices i -> -1 - i are used as a convention to encode orientation.
inline MFEM_HOST_DEVICE int FlipIndexSign(int i) { return -1 - i; }
inline MFEM_HOST_DEVICE int UnsignIndex(int i) { return i < 0 ? -1 - i : i; }
} // namespace mfem
#endif
-155
View File
@@ -80,159 +80,4 @@ std::string HashFunction::GetHash() const
return hash;
}
constexpr static uint64_t rotl64(uint64_t x, int r)
{
return (x << r) | (x >> (64 - r));
}
void Hasher::init(uint64_t seed)
{
data[0] = seed;
data[1] = seed;
nbytes = 0;
}
void Hasher::add_block(uint64_t k1, uint64_t k2)
{
constexpr uint64_t c1 = 0x87c37b91114253d5ull;
constexpr uint64_t c2 = 0x4cf5ad432745937full;
k1 *= c1;
k1 = rotl64(k1, 31);
k1 *= c2;
data[0] ^= k1;
data[0] = rotl64(data[0], 27);
data[0] += data[1];
data[0] = data[0] * 5 + 0x52dce729ull;
k2 *= c2;
k2 = rotl64(k2, 33);
k2 *= c1;
data[1] ^= k2;
data[1] = rotl64(data[1], 31);
data[1] += data[0];
data[1] = data[1] * 5 + 0x38495ab5ull;
}
static uint64_t fmix64(uint64_t k)
{
// http://zimbry.blogspot.com/2011/09/better-bit-mixing-improving-on.html
// mix13
k ^= k >> 30;
k *= 0xbf58476d1ce4e5b9ull;
k ^= k >> 27;
k *= 0x94d049bb133111ebull;
k ^= k >> 31;
return k;
}
void Hasher::append(const uint8_t *vs, uint64_t bytes)
{
if (bytes == 0)
{
return;
}
auto rem = nbytes % 16;
nbytes += bytes;
uint8_t *tmp = reinterpret_cast<uint8_t *>(buf_);
while (true)
{
if (bytes + rem >= 16)
{
std::copy(vs, vs + 16 - rem, tmp + rem);
add_block(buf_[0], buf_[1]);
vs += (16 - rem);
bytes -= (16 - rem);
rem = 0;
}
else
{
std::copy(vs, vs + bytes, tmp + rem);
return;
}
}
}
void Hasher::finalize()
{
auto rem = nbytes % 16;
if (rem > 0)
{
nbytes -= rem;
if (rem <= 8)
{
finalize(buf_[0], rem);
}
else
{
finalize(buf_[0], buf_[1], rem);
}
return;
}
data[0] ^= nbytes;
data[1] ^= nbytes;
data[0] += data[1];
data[1] += data[0];
data[0] = fmix64(data[0]);
data[1] = fmix64(data[1]);
data[0] += data[1];
data[1] += data[0];
}
void Hasher::finalize(uint64_t k1, int num)
{
constexpr uint64_t c1 = 0x87c37b91114253d5ull;
constexpr uint64_t c2 = 0x4cf5ad432745937full;
nbytes += num;
k1 *= c1;
k1 = rotl64(k1, 31);
k1 *= c2;
data[0] ^= k1;
data[0] ^= nbytes;
data[1] ^= nbytes;
data[0] += data[1];
data[1] += data[0];
data[0] = fmix64(data[0]);
data[1] = fmix64(data[1]);
data[0] += data[1];
data[1] += data[0];
}
void Hasher::finalize(uint64_t k1, uint64_t k2, int num)
{
constexpr uint64_t c1 = 0x87c37b91114253d5ull;
constexpr uint64_t c2 = 0x4cf5ad432745937full;
nbytes += num;
k2 *= c2;
k2 = rotl64(k2, 33);
k2 *= c1;
data[1] ^= k2;
k1 *= c1;
k1 = rotl64(k1, 31);
k1 *= c2;
data[0] ^= k1;
data[0] ^= nbytes;
data[1] ^= nbytes;
data[0] += data[1];
data[1] += data[0];
data[0] = fmix64(data[0]);
data[1] = fmix64(data[1]);
data[0] += data[1];
data[1] += data[0];
}
} // namespace mfem
+1 -70
View File
@@ -15,8 +15,8 @@
#include "../config/config.hpp"
#include "array.hpp"
#include "globals.hpp"
#include "hash_util.hpp"
#include <array>
#include <cstdint>
#include <type_traits>
#include <utility>
@@ -457,75 +457,6 @@ protected:
int BinSize(int idx) const;
};
///
/// @brief streaming implementation for murmurhash3 128 (x64).
/// Constructs the hash in 3 stages: init, append, finalize.
///
struct Hasher
{
/// where the final hash result is stored after finalize. Use data[1] when
/// only 64 bits are required.
uint64_t data[2] = {0, 0};
private:
uint64_t nbytes = 0;
uint64_t buf_[2] = {0, 0};
public:
/// resets this hasher back to an initial seed
void init(uint64_t seed = 0);
void append(const uint8_t *vs, uint64_t bytes);
void finalize();
private:
// add 16 bytes
void add_block(uint64_t k1, uint64_t k2);
// add [1-8] more bytes, then finalize
void finalize(uint64_t k1, int num);
// add [1-15] more bytes, then finalize
// 0 < num < 16
void finalize(uint64_t k1, uint64_t k2, int num);
};
/// Helper class for hashing std::pair. Usable in place of std::hash<std::pair<T,U>>
struct PairHasher
{
template <class T, class V>
size_t operator()(const std::pair<T, V> &v) const noexcept
{
Hasher hash;
// chosen randomly with a 2^64-sided dice
hash.init(0xfebd1fe69813c14full);
hash.append(reinterpret_cast<const uint8_t *>(&v.first), sizeof(T));
hash.append(reinterpret_cast<const uint8_t *>(&v.second), sizeof(V));
hash.finalize();
return hash.data[1];
}
};
/// Helper class for hashing std::array. Usable in place of std::hash<std::array<T,N>>
struct ArrayHasher
{
template <class T, size_t N>
size_t operator()(const std::array<T, N> &v) const noexcept
{
Hasher hash;
// chosen randomly with a 2^64-sided dice
hash.init(0xfebd1fe69813c14full);
for (size_t i = 0; i < N; ++i)
{
hash.append(reinterpret_cast<const uint8_t *>(&v[i]), sizeof(T));
}
hash.finalize();
return hash.data[1];
}
};
/// Hash function for data sequences.
/** Depends on GnuTLS for SHA-256 hashing. */
class HashFunction
+172
View File
@@ -0,0 +1,172 @@
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#include "hash_util.hpp"
namespace mfem
{
constexpr static uint64_t rotl64(uint64_t x, int r)
{
return (x << r) | (x >> (64 - r));
}
void Hasher::init(uint64_t seed)
{
data[0] = seed;
data[1] = seed;
nbytes = 0;
}
void Hasher::add_block(uint64_t k1, uint64_t k2)
{
constexpr uint64_t c1 = 0x87c37b91114253d5ull;
constexpr uint64_t c2 = 0x4cf5ad432745937full;
k1 *= c1;
k1 = rotl64(k1, 31);
k1 *= c2;
data[0] ^= k1;
data[0] = rotl64(data[0], 27);
data[0] += data[1];
data[0] = data[0] * 5 + 0x52dce729ull;
k2 *= c2;
k2 = rotl64(k2, 33);
k2 *= c1;
data[1] ^= k2;
data[1] = rotl64(data[1], 31);
data[1] += data[0];
data[1] = data[1] * 5 + 0x38495ab5ull;
}
static uint64_t fmix64(uint64_t k)
{
// http://zimbry.blogspot.com/2011/09/better-bit-mixing-improving-on.html
// mix13
k ^= k >> 30;
k *= 0xbf58476d1ce4e5b9ull;
k ^= k >> 27;
k *= 0x94d049bb133111ebull;
k ^= k >> 31;
return k;
}
void Hasher::append(const std::byte *vs, uint64_t bytes)
{
if (bytes == 0)
{
return;
}
auto rem = nbytes % 16;
nbytes += bytes;
std::byte *tmp = reinterpret_cast<std::byte *>(buf_);
while (true)
{
if (bytes + rem >= 16)
{
std::copy(vs, vs + 16 - rem, tmp + rem);
add_block(buf_[0], buf_[1]);
vs += (16 - rem);
bytes -= (16 - rem);
rem = 0;
}
else
{
std::copy(vs, vs + bytes, tmp + rem);
return;
}
}
}
void Hasher::finalize()
{
auto rem = nbytes % 16;
if (rem > 0)
{
nbytes -= rem;
if (rem <= 8)
{
finalize(buf_[0], rem);
}
else
{
finalize(buf_[0], buf_[1], rem);
}
return;
}
data[0] ^= nbytes;
data[1] ^= nbytes;
data[0] += data[1];
data[1] += data[0];
data[0] = fmix64(data[0]);
data[1] = fmix64(data[1]);
data[0] += data[1];
data[1] += data[0];
}
void Hasher::finalize(uint64_t k1, int num)
{
constexpr uint64_t c1 = 0x87c37b91114253d5ull;
constexpr uint64_t c2 = 0x4cf5ad432745937full;
nbytes += num;
k1 *= c1;
k1 = rotl64(k1, 31);
k1 *= c2;
data[0] ^= k1;
data[0] ^= nbytes;
data[1] ^= nbytes;
data[0] += data[1];
data[1] += data[0];
data[0] = fmix64(data[0]);
data[1] = fmix64(data[1]);
data[0] += data[1];
data[1] += data[0];
}
void Hasher::finalize(uint64_t k1, uint64_t k2, int num)
{
constexpr uint64_t c1 = 0x87c37b91114253d5ull;
constexpr uint64_t c2 = 0x4cf5ad432745937full;
nbytes += num;
k2 *= c2;
k2 = rotl64(k2, 33);
k2 *= c1;
data[1] ^= k2;
k1 *= c1;
k1 = rotl64(k1, 31);
k1 *= c2;
data[0] ^= k1;
data[0] ^= nbytes;
data[1] ^= nbytes;
data[0] += data[1];
data[1] += data[0];
data[0] = fmix64(data[0]);
data[1] = fmix64(data[1]);
data[0] += data[1];
data[1] += data[0];
}
}
+172
View File
@@ -0,0 +1,172 @@
// Copyright (c) 2010-2025, Lawrence Livermore National Security, LLC. Produced
// at the Lawrence Livermore National Laboratory. All Rights reserved. See files
// LICENSE and NOTICE for details. LLNL-CODE-806117.
//
// This file is part of the MFEM library. For more information and source code
// availability visit https://mfem.org.
//
// MFEM is free software; you can redistribute it and/or modify it under the
// terms of the BSD-3 license. We welcome feedback and contributions, see file
// CONTRIBUTING.md for details.
#ifndef MFEM_HASH_UTIL_HPP
#define MFEM_HASH_UTIL_HPP
#include <array>
#include <cstddef>
#include <tuple>
#include <functional>
#include <utility>
#include <cstdint>
namespace mfem
{
/// @brief streaming implementation for murmurhash3 128 (x64).
///
/// Constructs the hash in 3 stages: init, append, finalize.
struct Hasher
{
/// @brief Storage for the final hash result after finalize() is called.
///
/// Use data[1] when only 64 bits are required.
uint64_t data[2] = {0, 0};
private:
uint64_t nbytes = 0;
uint64_t buf_[2] = {0, 0};
public:
/// Resets the Hasher back to an initial seed
void init(uint64_t seed = 0);
/// Append data @a vs of size @a bytes.
void append(const std::byte *vs, uint64_t bytes);
void finalize();
private:
/// Add a block of 16 bytes.
void add_block(uint64_t k1, uint64_t k2);
/// @brief Add [1-8] more bytes, then finalize.
///
/// @a num must satisfy 0 < num < 9.
void finalize(uint64_t k1, int num);
/// @brief Add [1-15] more bytes, then finalize.
///
/// @a num must satisfy 0 < num < 16.
void finalize(uint64_t k1, uint64_t k2, int num);
};
template <class T> struct ChainedHasher
{
static void Append(Hasher &hasher, const T &value)
{
if constexpr (std::is_fundamental_v<T> || std::is_pointer_v<T>)
{
hasher.append(reinterpret_cast<const std::byte *>(&value), sizeof(T));
}
else
{
std::hash<T> h;
auto v = h(value);
hasher.append(reinterpret_cast<std::byte *>(&v), sizeof(v));
}
}
};
template <class T, class V> struct ChainedHasher<std::pair<T, V>>
{
static void Append(Hasher &hasher, const std::pair<T, V> &value)
{
ChainedHasher<T>::Append(hasher, value.first);
ChainedHasher<V>::Append(hasher, value.second);
}
};
template <class T, size_t N> struct ChainedHasher<std::array<T, N>>
{
static void Append(Hasher &hasher, const std::array<T, N> &value)
{
for (size_t i = 0; i < N; ++i)
{
ChainedHasher<T>::Append(hasher, value[i]);
}
}
};
template<class... Ts> struct ChainedHasher<std::tuple<Ts...>>
{
private:
template <size_t N>
static void AppendImpl(Hasher &hasher, const std::tuple<Ts...> &value)
{
ChainedHasher<std::decay_t<decltype(std::get<N>(value))>>::Append(
hasher, std::get<N>(value));
if constexpr (N + 1 < sizeof...(Ts))
{
AppendImpl<N + 1>(hasher, value);
}
}
public:
static void Append(Hasher &hasher, const std::tuple<Ts...> &value)
{
if constexpr (sizeof...(Ts))
{
AppendImpl<0>(hasher, value);
}
}
};
/// Helper class for hashing std::pair of hashable types.
struct PairHasher
{
template <class T, class V>
size_t operator()(const std::pair<T, V> &v) const noexcept
{
Hasher hash;
// chosen randomly with a 2^64-sided dice
hash.init(0xfebd1fe69813c14full);
ChainedHasher<std::pair<T, V>>::Append(hash, v);
hash.finalize();
return hash.data[1];
}
};
/// Helper class for hashing std::array of a hashable type.
struct ArrayHasher
{
template <class T, size_t N>
size_t operator()(const std::array<T, N> &v) const noexcept
{
Hasher hash;
// chosen randomly with a 2^64-sided dice
hash.init(0xfebd1fe69813c14full);
ChainedHasher<std::array<T, N>>::Append(hash, v);
hash.finalize();
return hash.data[1];
}
};
/// Helper class for hashing std::tuple of hashable types.
struct TupleHasher
{
template <class T>
size_t operator()(const T &v) const noexcept
{
Hasher hash;
// chosen randomly with a 2^64-sided dice
hash.init(0xfebd1fe69813c14full);
ChainedHasher<T>::Append(hash, v);
hash.finalize();
return hash.data[1];
}
};
} // namespace mfem
#endif
+2
View File
@@ -20,9 +20,11 @@
#if defined(MFEM_USE_HIP) && defined(__HIP__)
#define MFEM_USE_CUDA_OR_HIP
constexpr bool mfem_use_gpu = true;
#define MFEM_DEVICE __device__
#define MFEM_HOST __host__
#define MFEM_LAMBDA __host__ __device__
#define MFEM_LAUNCH_BOUNDS __launch_bounds__
// #define MFEM_HOST_DEVICE __host__ __device__ // defined in config/config.hpp
#define MFEM_DEVICE_SYNC MFEM_GPU_CHECK(hipDeviceSynchronize())
#define MFEM_STREAM_SYNC MFEM_GPU_CHECK(hipStreamSynchronize(0))
+6 -2
View File
@@ -759,7 +759,9 @@ private:
{
switch (mt)
{
case MT::HOST_DEBUG: return new MmuHostMemorySpace();
case MT::HOST_DEBUG:
if (GetEnv("MFEM_MMU_STD")) { return new StdHostMemorySpace(); }
return new MmuHostMemorySpace();
#ifdef MFEM_USE_UMPIRE
case MT::HOST_UMPIRE:
return new UmpireHostMemorySpace(
@@ -788,7 +790,9 @@ private:
case MT::DEVICE_UMPIRE: return new NoDeviceMemorySpace();
case MT::DEVICE_UMPIRE_2: return new NoDeviceMemorySpace();
#endif
case MT::DEVICE_DEBUG: return new MmuDeviceMemorySpace();
case MT::DEVICE_DEBUG:
if (GetEnv("MFEM_MMU_STD")) { return new StdDeviceMemorySpace(); }
return new MmuDeviceMemorySpace();
case MT::DEVICE:
{
#if defined(MFEM_USE_CUDA)
+9
View File
@@ -82,6 +82,15 @@ public:
}
}
/// Make the DenseMatrix to reference the given sub-Memory of @a base.
/** The DenseMatrix does not assume ownership of the data array, i.e. it will
not delete the @a base Memory. */
void MakeRef(Memory<real_t> &base, int offset, int h, int w)
{
data.MakeRef(base, offset, h*w);
height = h; width = w;
}
/// Change the data array and the size of the DenseMatrix.
/** The DenseMatrix does not assume ownership of the data array, i.e. it will
not delete the data array @a d. */
+179
View File
@@ -3634,12 +3634,25 @@ void HypreSmoother::SetType(HypreSmoother::Type type_, int relax_times_)
relax_times = relax_times_;
}
void HypreSmoother::GetType(HypreSmoother::Type &type_, int &relax_times_) const
{
type_ = static_cast<HypreSmoother::Type>(type);
relax_times_ = relax_times;
}
void HypreSmoother::SetSOROptions(real_t relax_weight_, real_t omega_)
{
relax_weight = relax_weight_;
omega = omega_;
}
void HypreSmoother::GetSOROptions(real_t &relax_weight_, real_t &omega_) const
{
// TODO: are these used for all smoother types?
relax_weight_ = relax_weight;
omega_ = omega;
}
void HypreSmoother::SetPolyOptions(int poly_order_, real_t poly_fraction_,
int eig_est_cg_iter_)
{
@@ -3648,6 +3661,15 @@ void HypreSmoother::SetPolyOptions(int poly_order_, real_t poly_fraction_,
eig_est_cg_iter = eig_est_cg_iter_;
}
void HypreSmoother::GetPolyOptions(int &poly_order_, real_t &poly_fraction_,
int &eig_est_cg_iter_) const
{
// TODO: are these used for all smoother types?
poly_order_ = poly_order;
poly_fraction_ = poly_fraction;
eig_est_cg_iter_ = eig_est_cg_iter;
}
void HypreSmoother::SetTaubinOptions(real_t lambda_, real_t mu_,
int taubin_iter_)
{
@@ -3656,6 +3678,14 @@ void HypreSmoother::SetTaubinOptions(real_t lambda_, real_t mu_,
taubin_iter = taubin_iter_;
}
void HypreSmoother::GetTaubinOptions(real_t &lambda_, real_t &mu_,
int &taubin_iter_) const
{
lambda_ = lambda;
mu_ = mu;
taubin_iter_ = taubin_iter;
}
void HypreSmoother::SetWindowByName(const char* name)
{
real_t a = -1, b, c;
@@ -3678,6 +3708,13 @@ void HypreSmoother::SetWindowParameters(real_t a, real_t b, real_t c)
window_params[2] = c;
}
void HypreSmoother::GetWindowParameters(real_t &a, real_t &b, real_t &c) const
{
a = window_params[0];
b = window_params[1];
c = window_params[2];
}
void HypreSmoother::SetOperator(const Operator &op)
{
A = const_cast<HypreParMatrix *>(dynamic_cast<const HypreParMatrix *>(&op));
@@ -4173,12 +4210,20 @@ HypreSolver::~HypreSolver()
auxX.Delete();
}
void HyprePCG::SetDefaultOptions()
{
// Explicitly set just in case past/future versions of hypre change the
// defaults
SetTol(1e-6);
SetMaxIter(1000);
}
HyprePCG::HyprePCG(MPI_Comm comm) : precond(NULL)
{
iterative_mode = true;
HYPRE_ParCSRPCGCreate(comm, &pcg_solver);
SetDefaultOptions();
}
HyprePCG::HyprePCG(const HypreParMatrix &A_) : HypreSolver(&A_), precond(NULL)
@@ -4190,6 +4235,7 @@ HyprePCG::HyprePCG(const HypreParMatrix &A_) : HypreSolver(&A_), precond(NULL)
HYPRE_ParCSRMatrixGetComm(*A, &comm);
HYPRE_ParCSRPCGCreate(comm, &pcg_solver);
SetDefaultOptions();
}
void HyprePCG::SetOperator(const Operator &op)
@@ -4214,21 +4260,54 @@ void HyprePCG::SetOperator(const Operator &op)
auxX.Delete(); auxX.Reset();
}
void HyprePCG::SetUseTwoNorm(bool val)
{
HYPRE_PCGSetTwoNorm(pcg_solver, val);
}
bool HyprePCG::GetUseTwoNorm() const
{
HYPRE_Int val;
HYPRE_PCGGetTwoNorm(pcg_solver, &val);
return val != 0;
}
void HyprePCG::SetTol(real_t tol)
{
HYPRE_PCGSetTol(pcg_solver, tol);
}
real_t HyprePCG::GetTol() const
{
HYPRE_Real tol;
HYPRE_PCGGetTol(pcg_solver, &tol);
return tol;
}
void HyprePCG::SetAbsTol(real_t atol)
{
HYPRE_PCGSetAbsoluteTol(pcg_solver, atol);
}
real_t HyprePCG::GetAbsTol() const
{
HYPRE_Real atol;
hypre_PCGGetAbsoluteTol(pcg_solver, &atol);
return atol;
}
void HyprePCG::SetMaxIter(int max_iter)
{
HYPRE_PCGSetMaxIter(pcg_solver, max_iter);
}
int HyprePCG::GetMaxIter() const
{
HYPRE_Int max_iter;
HYPRE_PCGGetMaxIter(pcg_solver, &max_iter);
return max_iter;
}
void HyprePCG::SetLogging(int logging)
{
HYPRE_PCGSetLogging(pcg_solver, logging);
@@ -4344,6 +4423,20 @@ HyprePCG::~HyprePCG()
HYPRE_ParCSRPCGDestroy(pcg_solver);
}
#if MFEM_HYPRE_VERSION >= 21500
HypreParVector HyprePCG::GetResiduals() const
{
HYPRE_ParVector r;
HYPRE_ParCSRPCGGetResidual(pcg_solver, &r);
return HypreParVector(r);
}
void HyprePCG::GetFinalAbsResidualNorm(real_t &final_res_norm, real_t p) const
{
auto r = GetResiduals();
ParNormlp(r, p, r.GetComm());
}
#endif
HypreGMRES::HypreGMRES(MPI_Comm comm) : precond(NULL)
{
@@ -4399,26 +4492,69 @@ void HypreGMRES::SetOperator(const Operator &op)
auxX.Delete(); auxX.Reset();
}
#if MFEM_HYPRE_VERSION >= 21500
HypreParVector HypreGMRES::GetResiduals() const
{
HYPRE_ParVector r;
HYPRE_ParCSRGMRESGetResidual(gmres_solver, &r);
return HypreParVector(r);
}
void HypreGMRES::GetFinalAbsResidualNorm(real_t &final_res_norm, real_t p) const
{
auto r = GetResiduals();
ParNormlp(r, p, r.GetComm());
}
#endif
void HypreGMRES::SetTol(real_t tol)
{
HYPRE_GMRESSetTol(gmres_solver, tol);
}
real_t HypreGMRES::GetTol()const
{
HYPRE_Real tol;
HYPRE_GMRESGetTol(gmres_solver, &tol);
return tol;
}
void HypreGMRES::SetAbsTol(real_t tol)
{
HYPRE_GMRESSetAbsoluteTol(gmres_solver, tol);
}
real_t HypreGMRES::GetAbsTol() const
{
HYPRE_Real atol;
HYPRE_GMRESGetAbsoluteTol(gmres_solver, &atol);
return atol;
}
void HypreGMRES::SetMaxIter(int max_iter)
{
HYPRE_GMRESSetMaxIter(gmres_solver, max_iter);
}
int HypreGMRES::GetMaxIter() const
{
HYPRE_Int max_iter;
HYPRE_GMRESGetMaxIter(gmres_solver, &max_iter);
return max_iter;
}
void HypreGMRES::SetKDim(int k_dim)
{
HYPRE_GMRESSetKDim(gmres_solver, k_dim);
}
int HypreGMRES::GetKDim() const
{
HYPRE_Int k_dim;
HYPRE_GMRESGetKDim(gmres_solver, &k_dim);
return k_dim;
}
void HypreGMRES::SetLogging(int logging)
{
HYPRE_GMRESSetLogging(gmres_solver, logging);
@@ -4576,16 +4712,37 @@ void HypreFGMRES::SetTol(real_t tol)
HYPRE_ParCSRFlexGMRESSetTol(fgmres_solver, tol);
}
real_t HypreFGMRES::GetTol() const
{
HYPRE_Real tol;
HYPRE_FlexGMRESGetTol(fgmres_solver, &tol);
return tol;
}
void HypreFGMRES::SetMaxIter(int max_iter)
{
HYPRE_ParCSRFlexGMRESSetMaxIter(fgmres_solver, max_iter);
}
int HypreFGMRES::GetMaxIter() const
{
HYPRE_Int max_iter;
HYPRE_FlexGMRESGetMaxIter(fgmres_solver, &max_iter);
return max_iter;
}
void HypreFGMRES::SetKDim(int k_dim)
{
HYPRE_ParCSRFlexGMRESSetKDim(fgmres_solver, k_dim);
}
int HypreFGMRES::GetKDim() const
{
HYPRE_Int k_dim;
HYPRE_FlexGMRESGetKDim(fgmres_solver, &k_dim);
return k_dim;
}
void HypreFGMRES::SetLogging(int logging)
{
HYPRE_ParCSRFlexGMRESSetLogging(fgmres_solver, logging);
@@ -4682,6 +4839,21 @@ HypreFGMRES::~HypreFGMRES()
HYPRE_ParCSRFlexGMRESDestroy(fgmres_solver);
}
#if MFEM_HYPRE_VERSION >= 21500
HypreParVector HypreFGMRES::GetResiduals() const
{
HYPRE_ParVector r;
HYPRE_ParCSRFlexGMRESGetResidual(fgmres_solver, &r);
return HypreParVector(r);
}
void HypreFGMRES::GetFinalAbsResidualNorm(real_t &final_res_norm,
real_t p) const
{
auto r = GetResiduals();
ParNormlp(r, p, r.GetComm());
}
#endif
void HypreDiagScale::SetOperator(const Operator &op)
{
@@ -5170,6 +5342,13 @@ void HypreBoomerAMG::ResetAMGPrecond()
}
}
int HypreBoomerAMG::GetMaxIter() const
{
HYPRE_Int max_iter;
HYPRE_BoomerAMGGetMaxIter(amg_precond, &max_iter);
return max_iter;
}
void HypreBoomerAMG::SetOperator(const Operator &op)
{
const HypreParMatrix *new_A = dynamic_cast<const HypreParMatrix *>(&op);
+97 -7
View File
@@ -1160,6 +1160,15 @@ public:
return HypreUsingGPU() ? l1Jacobi : l1GS;
}
/// Default solver settings:
/// type = DefaultType()
/// relax_times = 1
/// omega = 1.0
/// poly_order = 2
/// poly_fraction = 0.3
/// lambda = 0.5
/// mu = -0.5
/// taubin_iter = 40
HypreSmoother();
HypreSmoother(const HypreParMatrix &A_, int type = DefaultType(),
@@ -1169,20 +1178,28 @@ public:
/// Set the relaxation type and number of sweeps
void SetType(HypreSmoother::Type type, int relax_times = 1);
using Operator::GetType;
void GetType(HypreSmoother::Type &type, int &relax_times) const;
/// Set SOR-related parameters
void SetSOROptions(real_t relax_weight, real_t omega);
void GetSOROptions(real_t &relax_weight, real_t &omega) const;
/// Set parameters for polynomial smoothing
/** By default, 10 iterations of CG are used to estimate the eigenvalues.
Setting eig_est_cg_iter = 0 uses hypre's hypre_ParCSRMaxEigEstimate() instead. */
void SetPolyOptions(int poly_order, real_t poly_fraction,
int eig_est_cg_iter = 10);
void GetPolyOptions(int &poly_order, real_t &poly_fraction,
int &eig_est_cg_iter) const;
/// Set parameters for Taubin's lambda-mu method
void SetTaubinOptions(real_t lambda, real_t mu, int iter);
void GetTaubinOptions(real_t &lambda, real_t &mu, int &iter) const;
/// Convenience function for setting canonical windowing parameters
void SetWindowByName(const char* window_name);
/// Set parameters for windowing function for FIR smoother.
void SetWindowParameters(real_t a, real_t b, real_t c);
void GetWindowParameters(real_t &a, real_t &b, real_t &c) const;
/// Compute window and Chebyshev coefficients for given polynomial order.
void SetFIRCoefficients(real_t max_eig);
@@ -1190,12 +1207,15 @@ public:
/** By default, the l1-norms take their sign from the corresponding diagonal
entries in the associated matrix. */
void SetPositiveDiagonal(bool pos = true) { pos_l1_norms = pos; }
bool IsPositiveDiagonal() const { return pos_l1_norms; };
/** Explicitly indicate whether the linear system matrix A is symmetric. If A
is symmetric, the smoother will also be symmetric. In this case, calling
MultTranspose will be redirected to Mult. (This is also done if the
smoother is diagonal.) By default, A is assumed to be nonsymmetric. */
void SetOperatorSymmetry(bool is_sym) { A_is_symmetric = is_sym; }
/// @return true if the smoother assumes A is symmetric, false otherwise
bool IsOperatorSymmetric() const { return A_is_symmetric; }
/** Set/update the associated operator. Must be called after setting the
HypreSmoother type and options. */
@@ -1327,6 +1347,7 @@ public:
#endif
/// PCG solver in hypre
/// Defaults to (relative) tol=1e-6, atol=0, max_iter=1000
class HyprePCG : public HypreSolver
{
private:
@@ -1334,6 +1355,9 @@ private:
HypreSolver * precond;
/// Default PCG options
void SetDefaultOptions();
public:
HyprePCG(MPI_Comm comm);
@@ -1342,8 +1366,11 @@ public:
void SetOperator(const Operator &op) override;
void SetTol(real_t tol);
real_t GetTol() const;
void SetAbsTol(real_t atol);
real_t GetAbsTol() const;
void SetMaxIter(int max_iter);
int GetMaxIter() const;
void SetLogging(int logging);
void SetPrintLevel(int print_lvl);
@@ -1368,12 +1395,32 @@ public:
num_iterations = internal::to_int(num_it);
}
/// Gets the relative residual norm
void GetFinalResidualNorm(real_t &final_res_norm) const
{
HYPRE_ParCSRPCGGetFinalRelativeResidualNorm(pcg_solver,
&final_res_norm);
}
/// @param[in] use
/// Convergence criterion:
/// - when true: (r, r) < max(r_tol^2 (b, b), a_tol^2)
/// - when false: (r, A r) < max(r_tol^2 (b, A b), a_tol^2)
/// @sa HYPRE_PCGSetTwoNorm
void SetUseTwoNorm(bool use);
/// @sa HYPRE_PCGGetTwoNorm
bool GetUseTwoNorm() const;
#if MFEM_HYPRE_VERSION >= 21500
/// Gets the internal Hypre solver residual vector.
/// @sa HYPRE_ParCSRPCGGetResidual
HypreParVector GetResiduals() const;
/// Computes the absolute residual p-norm.
void GetFinalAbsResidualNorm(real_t &final_res_norm, real_t p = 2) const;
#endif
/// The typecast to HYPRE_Solver returns the internal pcg_solver
operator HYPRE_Solver() const override { return pcg_solver; }
@@ -1391,7 +1438,8 @@ public:
virtual ~HyprePCG();
};
/// GMRES solver in hypre
/// GMRES solver in hypre.
/// Defaults to k=50, (relative) tol=1e-6, atol=0, max_iter=100.
class HypreGMRES : public HypreSolver
{
private:
@@ -1410,9 +1458,13 @@ public:
void SetOperator(const Operator &op) override;
void SetTol(real_t tol);
real_t GetTol() const;
void SetAbsTol(real_t tol);
real_t GetAbsTol() const;
void SetMaxIter(int max_iter);
int GetMaxIter() const;
void SetKDim(int dim);
int GetKDim() const;
void SetLogging(int logging);
void SetPrintLevel(int print_lvl);
@@ -1432,12 +1484,22 @@ public:
num_iterations = internal::to_int(num_it);
}
/// Gets the relative residual norm
void GetFinalResidualNorm(real_t &final_res_norm) const
{
HYPRE_ParCSRGMRESGetFinalRelativeResidualNorm(gmres_solver,
&final_res_norm);
}
#if MFEM_HYPRE_VERSION >= 21500
/// Gets the internal Hypre solver residual vector.
/// @sa HYPRE_ParCSRGMRESGetResidual
HypreParVector GetResiduals() const;
/// Computes the absolute residual p-norm.
void GetFinalAbsResidualNorm(real_t &final_res_norm, real_t p = 2) const;
#endif
/// The typecast to HYPRE_Solver returns the internal gmres_solver
operator HYPRE_Solver() const override { return gmres_solver; }
@@ -1455,7 +1517,8 @@ public:
virtual ~HypreGMRES();
};
/// Flexible GMRES solver in hypre
/// Flexible GMRES solver in hypre.
/// Defaults to k=50, (relative) tol=1e-6, max_iter=100.
class HypreFGMRES : public HypreSolver
{
private:
@@ -1474,8 +1537,11 @@ public:
void SetOperator(const Operator &op) override;
void SetTol(real_t tol);
real_t GetTol() const;
void SetMaxIter(int max_iter);
int GetMaxIter() const;
void SetKDim(int dim);
int GetKDim() const;
void SetLogging(int logging);
void SetPrintLevel(int print_lvl);
@@ -1495,12 +1561,22 @@ public:
num_iterations = internal::to_int(num_it);
}
/// Gets the relative residual norm
void GetFinalResidualNorm(real_t &final_res_norm) const
{
HYPRE_ParCSRFlexGMRESGetFinalRelativeResidualNorm(fgmres_solver,
&final_res_norm);
}
#if MFEM_HYPRE_VERSION >= 21500
/// Gets the internal Hypre solver residual vector.
/// @sa HYPRE_ParCSRFlexGMRESGetResidual
HypreParVector GetResiduals() const;
/// Computes the absolute residual p-norm.
void GetFinalAbsResidualNorm(real_t &final_res_norm, real_t p = 2) const;
#endif
/// The typecast to HYPRE_Solver returns the internal fgmres_solver
operator HYPRE_Solver() const override { return fgmres_solver; }
@@ -1556,7 +1632,8 @@ public:
virtual ~HypreDiagScale() { }
};
/// The ParaSails preconditioner in hypre
/// The ParaSails preconditioner in hypre.
/// See SetDefaultOptions() for default solver options.
class HypreParaSails : public HypreSolver
{
private:
@@ -1685,10 +1762,14 @@ public:
/**
@brief Wrapper for Hypre's native parallel ILU preconditioner.
The default ILU factorization type is ILU(k). If you need to change this, or
any other option, you can use the HYPRE_Solver method to cast the object for use
with Hypre's native functions. For example, if want to use natural ordering
rather than RCM reordering, you can use the following approach:
Default parameters: ILU(k) factorization type, tol=0.0 (for use as a
preconditioner), fill level = 1 (for ILU(k)), reverse Cuthill-McKee (RCM)
re-ordering.
If you need to change this, or any other option, you can use the HYPRE_Solver
method to cast the object for use with Hypre's native functions. For example, if
want to use natural ordering rather than RCM reordering, you can use the
following approach:
@code
mfem::HypreILU ilu();
@@ -1829,6 +1910,7 @@ public:
void SetMaxIter(int max_iter)
{ HYPRE_BoomerAMGSetMaxIter(amg_precond, max_iter); }
int GetMaxIter() const;
/// Expert option - consult hypre documentation/team
void SetMaxLevels(int max_levels)
@@ -1853,6 +1935,8 @@ public:
/// Expert option - consult hypre documentation/team
void SetRelaxType(int relax_type)
{ HYPRE_BoomerAMGSetRelaxType(amg_precond, relax_type); }
// not implemented in hypre
// int GetRelaxType() const;
/// Expert option - consult hypre documentation/team
void SetCycleType(int cycle_type)
@@ -2153,8 +2237,14 @@ public:
~HypreLOBPCG();
void SetTol(real_t tol);
// not implemented in HYPRE
// real_t GetTol() const;
void SetRelTol(real_t rel_tol);
// not implemented in HYPRE
// real_t GetRelTol() const;
void SetMaxIter(int max_iter);
// not implemented in HYPRE
// int GetMaxIter() const;
void SetPrintLevel(int logging);
void SetNumModes(int num_eigs) { nev = num_eigs; }
void SetPrecondUsageMode(int pcg_mode);
+57 -78
View File
@@ -38,6 +38,13 @@
#if PETSC_VERSION_LT(3,19,0)
#define PETSC_SUCCESS 0
#endif
#if PETSC_VERSION_LT(3,23,0)
#define PetscContainerSetCtxDestroy(A,B) PetscContainerSetUserDestroy(A,B)
typedef PetscErrorCode (PetscCtxDestroyFn)(void**);
#endif
#if PETSC_VERSION_LT(3,24,0)
typedef PetscErrorCode KSPMonitorFn(KSP,PetscInt,PetscReal,void*);
#endif
#include <fstream>
#include <iomanip>
@@ -77,13 +84,17 @@ static PetscErrorCode __mfem_mat_shell_apply_transpose(Mat,Vec,Vec);
static PetscErrorCode __mfem_mat_shell_destroy(Mat);
static PetscErrorCode __mfem_mat_shell_copy(Mat,Mat,MatStructure);
#if PETSC_VERSION_LT(3,23,0)
static PetscErrorCode __mfem_array_container_destroy(void*);
static PetscErrorCode __mfem_matarray_container_destroy(void *);
#else
static PetscErrorCode __mfem_array_container_destroy(void**);
static PetscErrorCode __mfem_matarray_container_destroy(void**);
typedef void *PetscCtxRt;
#elif PETSC_VERSION_LT(3,25,0)
typedef void **PetscCtxRt;
#endif
static PetscErrorCode __mfem_array_container_destroy(PetscCtxRt);
static PetscErrorCode __mfem_matarray_container_destroy(PetscCtxRt);
#if PETSC_VERSION_LT(3,23,0)
static PetscErrorCode __mfem_monitor_ctx_destroy(void**);
#else
static PetscErrorCode __mfem_monitor_ctx_destroy(PetscCtxRt);
#endif
// auxiliary functions
static PetscErrorCode Convert_Array_IS(MPI_Comm,bool,const mfem::Array<int>*,
@@ -1317,11 +1328,7 @@ BlockDiagonalConstructor(MPI_Comm comm,
ierr = PetscContainerCreate(comm,&c); CCHKERRQ(comm,ierr);
ierr = PetscContainerSetPointer(c,ptrs[i]); CCHKERRQ(comm,ierr);
#if PETSC_VERSION_LT(3,23,0)
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
#else
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
#endif
CCHKERRQ(comm,ierr);
ierr = PetscObjectCompose((PetscObject)A,names[i],(PetscObject)c);
CCHKERRQ(comm,ierr);
@@ -1648,11 +1655,7 @@ void PetscParMatrix::ConvertOperator(MPI_Comm comm, const Operator &op, Mat* A,
PetscContainer c;
ierr = PetscContainerCreate(comm,&c); CCHKERRQ(comm,ierr);
ierr = PetscContainerSetPointer(c,vmatsl2l); PCHKERRQ(c,ierr);
#if PETSC_VERSION_LT(3,23,0)
ierr = PetscContainerSetUserDestroy(c,__mfem_matarray_container_destroy);
#else
ierr = PetscContainerSetCtxDestroy(c,__mfem_matarray_container_destroy);
#endif
PCHKERRQ(c,ierr);
ierr = PetscObjectCompose((PetscObject)(*A),"_MatIS_PtAP_l2l",(PetscObject)c);
PCHKERRQ((*A),ierr);
@@ -1748,11 +1751,7 @@ void PetscParMatrix::ConvertOperator(MPI_Comm comm, const Operator &op, Mat* A,
ierr = PetscContainerCreate(PETSC_COMM_SELF,&c); PCHKERRQ(B,ierr);
ierr = PetscContainerSetPointer(c,ptrs[i]); PCHKERRQ(B,ierr);
#if PETSC_VERSION_LT(3,23,0)
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
#else
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
#endif
PCHKERRQ(B,ierr);
ierr = PetscObjectCompose((PetscObject)(B),names[i],(PetscObject)c);
PCHKERRQ(B,ierr);
@@ -2198,11 +2197,7 @@ PetscParMatrix * RAP(PetscParMatrix *Rt, PetscParMatrix *A, PetscParMatrix *P)
ierr = PetscContainerCreate(PetscObjectComm((PetscObject)B),&c);
PCHKERRQ(B,ierr);
ierr = PetscContainerSetPointer(c,vmatsl2l); PCHKERRQ(c,ierr);
#if PETSC_VERSION_LT(3,23,0)
ierr = PetscContainerSetUserDestroy(c,__mfem_matarray_container_destroy);
#else
ierr = PetscContainerSetCtxDestroy(c,__mfem_matarray_container_destroy);
#endif
PCHKERRQ(c,ierr);
ierr = PetscObjectCompose((PetscObject)B,"_MatIS_PtAP_l2l",(PetscObject)c);
PCHKERRQ(B,ierr);
@@ -2485,7 +2480,6 @@ void PetscSolver::SetMaxIter(int max_iter)
void PetscSolver::SetPrintLevel(int plev)
{
typedef PetscErrorCode (*myPetscFunc)(void**);
PetscViewerAndFormat *vf = NULL;
PetscViewer viewer = PETSC_VIEWER_STDOUT_(PetscObjectComm(obj));
@@ -2498,7 +2492,6 @@ void PetscSolver::SetPrintLevel(int plev)
{
// there are many other options, see the function KSPSetFromOptions() in
// src/ksp/ksp/interface/itcl.c
typedef PetscErrorCode (*myMonitor)(KSP,PetscInt,PetscReal,void*);
KSP ksp = (KSP)obj;
if (plev >= 0)
{
@@ -2507,29 +2500,29 @@ void PetscSolver::SetPrintLevel(int plev)
if (plev == 1)
{
#if PETSC_VERSION_LT(3,15,0)
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorDefault,vf,
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorDefault,vf,
#else
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorResidual,vf,
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorResidual,vf,
#endif
(myPetscFunc)PetscViewerAndFormatDestroy);
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
PCHKERRQ(ksp,ierr);
}
else if (plev > 1)
{
ierr = KSPSetComputeSingularValues(ksp,PETSC_TRUE); PCHKERRQ(ksp,ierr);
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorSingularValue,vf,
(myPetscFunc)PetscViewerAndFormatDestroy);
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorSingularValue,vf,
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
PCHKERRQ(ksp,ierr);
if (plev > 2)
{
ierr = PetscViewerAndFormatCreate(viewer,PETSC_VIEWER_DEFAULT,&vf);
PCHKERRQ(viewer,ierr);
#if PETSC_VERSION_LT(3,15,0)
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorTrueResidualNorm,vf,
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorTrueResidualNorm,vf,
#else
ierr = KSPMonitorSet(ksp,(myMonitor)KSPMonitorTrueResidual,vf,
ierr = KSPMonitorSet(ksp,(KSPMonitorFn *)KSPMonitorTrueResidual,vf,
#endif
(myPetscFunc)PetscViewerAndFormatDestroy);
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
PCHKERRQ(ksp,ierr);
}
}
@@ -2545,7 +2538,7 @@ void PetscSolver::SetPrintLevel(int plev)
if (plev > 0)
{
ierr = SNESMonitorSet(snes,(myMonitor)SNESMonitorDefault,vf,
(myPetscFunc)PetscViewerAndFormatDestroy);
(PetscCtxDestroyFn *)PetscViewerAndFormatDestroy);
PCHKERRQ(snes,ierr);
}
}
@@ -3639,12 +3632,20 @@ void PetscBDDCSolver::BDDCSolverConstructor(const PetscBDDCSolverParams &opts)
// make sure ess/nat_dof have been collectively set
PetscBool lpr = PETSC_FALSE,pr;
if (opts.ess_dof) { lpr = PETSC_TRUE; }
#if PETSC_VERSION_LT(3,24,0)
mpiierr = MPI_Allreduce(&lpr,&pr,1,MPIU_BOOL,MPI_LOR,comm);
#else
mpiierr = MPI_Allreduce(&lpr,&pr,1,MPI_C_BOOL,MPI_LOR,comm);
#endif
CCHKERRQ(comm,mpiierr);
MFEM_VERIFY(lpr == pr,"ess_dof should be collectively set");
lpr = PETSC_FALSE;
if (opts.nat_dof) { lpr = PETSC_TRUE; }
#if PETSC_VERSION_LT(3,24,0)
mpiierr = MPI_Allreduce(&lpr,&pr,1,MPIU_BOOL,MPI_LOR,comm);
#else
mpiierr = MPI_Allreduce(&lpr,&pr,1,MPI_C_BOOL,MPI_LOR,comm);
#endif
CCHKERRQ(comm,mpiierr);
MFEM_VERIFY(lpr == pr,"nat_dof should be collectively set");
// make sure fields have been collectively set
@@ -4058,8 +4059,13 @@ void PetscNonlinearSolver::SetOperator(const Operator &op)
ls = (PetscBool)(height == op.Height() && width == op.Width() &&
(void*)&op == fctx &&
(void*)&op == jctx);
#if PETSC_VERSION_LT(3,24,0)
mpiierr = MPI_Allreduce(&ls,&gs,1,MPIU_BOOL,MPI_LAND,
PetscObjectComm((PetscObject)snes));
#else
mpiierr = MPI_Allreduce(&ls,&gs,1,MPI_C_BOOL,MPI_LAND,
PetscObjectComm((PetscObject)snes));
#endif
CCHKERRQ(PetscObjectComm((PetscObject)snes),mpiierr);
if (!gs)
{
@@ -5316,21 +5322,27 @@ static PetscErrorCode __mfem_pc_shell_destroy(PC pc)
PetscFunctionReturn(PETSC_SUCCESS);
}
static PetscErrorCode __mfem_array_container_destroy(PetscCtxRt ptr)
{
PetscErrorCode ierr;
PetscFunctionBeginUser;
#if PETSC_VERSION_LT(3,23,0)
static PetscErrorCode __mfem_array_container_destroy(void *ptr)
{
PetscErrorCode ierr;
PetscFunctionBeginUser;
ierr = PetscFree(ptr); CHKERRQ(ierr);
#else
ierr = PetscFree(*(void**)ptr); CHKERRQ(ierr);
#endif
PetscFunctionReturn(PETSC_SUCCESS);
}
static PetscErrorCode __mfem_matarray_container_destroy(void *ptr)
static PetscErrorCode __mfem_matarray_container_destroy(PetscCtxRt ptr)
{
#if PETSC_VERSION_LT(3,23,0)
mfem::Array<Mat> *a = (mfem::Array<Mat>*)ptr;
PetscErrorCode ierr;
#else
mfem::Array<Mat> *a = *(mfem::Array<Mat>**)ptr;
#endif
PetscErrorCode ierr;
PetscFunctionBeginUser;
for (int i=0; i<a->Size(); i++)
@@ -5343,41 +5355,16 @@ static PetscErrorCode __mfem_matarray_container_destroy(void *ptr)
PetscFunctionReturn(PETSC_SUCCESS);
}
#if PETSC_VERSION_LT(3,23,0)
static PetscErrorCode __mfem_monitor_ctx_destroy(void **ctx)
#else
static PetscErrorCode __mfem_array_container_destroy(void **ptr)
static PetscErrorCode __mfem_monitor_ctx_destroy(PetscCtxRt ctx)
#endif
{
PetscErrorCode ierr;
PetscFunctionBeginUser;
ierr = PetscFree(*ptr); CHKERRQ(ierr);
PetscFunctionReturn(PETSC_SUCCESS);
}
static PetscErrorCode __mfem_matarray_container_destroy(void **ptr)
{
mfem::Array<Mat> *a = (mfem::Array<Mat>*)*ptr;
PetscErrorCode ierr;
PetscFunctionBeginUser;
for (int i=0; i<a->Size(); i++)
{
Mat M = (*a)[i];
MPI_Comm comm = PetscObjectComm((PetscObject)M);
ierr = MatDestroy(&M); CCHKERRQ(comm,ierr);
}
delete a;
PetscFunctionReturn(PETSC_SUCCESS);
}
#endif
static PetscErrorCode __mfem_monitor_ctx_destroy(void **ctx)
{
PetscErrorCode ierr;
PetscFunctionBeginUser;
ierr = PetscFree(*ctx); CHKERRQ(ierr);
ierr = PetscFree(*(void**)ctx); CHKERRQ(ierr);
PetscFunctionReturn(PETSC_SUCCESS);
}
@@ -5622,11 +5609,7 @@ static PetscErrorCode MatConvert_hypreParCSR_AIJ(hypre_ParCSRMatrix* hA,Mat* pA)
ierr = PetscContainerCreate(comm,&c); CHKERRQ(ierr);
ierr = PetscContainerSetPointer(c,ptrs[i]); CHKERRQ(ierr);
#if PETSC_VERSION_LT(3,23,0)
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
#else
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
#endif
CHKERRQ(ierr);
ierr = PetscObjectCompose((PetscObject)(*pA),names[i],(PetscObject)c);
CHKERRQ(ierr);
@@ -5720,11 +5703,7 @@ static PetscErrorCode MatConvert_hypreParCSR_IS(hypre_ParCSRMatrix* hA,Mat* pA)
ierr = PetscContainerCreate(PETSC_COMM_SELF,&c); CHKERRQ(ierr);
ierr = PetscContainerSetPointer(c,ptrs[i]); CHKERRQ(ierr);
#if PETSC_VERSION_LT(3,23,0)
ierr = PetscContainerSetUserDestroy(c,__mfem_array_container_destroy);
#else
ierr = PetscContainerSetCtxDestroy(c,__mfem_array_container_destroy);
#endif
CHKERRQ(ierr);
ierr = PetscObjectCompose((PetscObject)lA,names[i],(PetscObject)c);
CHKERRQ(ierr);
+5
View File
@@ -1066,6 +1066,11 @@ void SparseMatrix::BooleanMultTranspose(const Array<int> &x,
y.SetSize(Width());
y = 0;
HostReadI();
HostReadJ();
x.HostRead();
y.HostReadWrite();
for (int i = 0; i < Height(); i++)
{
if (x[i])
+12 -1
View File
@@ -363,14 +363,19 @@ void SuperLUSolver::Init(MPI_Comm comm)
// Set default options:
// options.Fact = DOFACT;
// options.Equil = YES;
// options.ParSymbFact = NO;
// options.ColPerm = METIS_AT_PLUS_A;
// options.RowPerm = LargeDiag_MC64;
// options.ReplaceTinyPivot = NO;
// options.Trans = NOTRANS;
// options.IterRefine = SLU_DOUBLE;
// options.Trans = NOTRANS;
// options.SolveInitialized = NO;
// options.RefineInitialized = NO;
// options.PrintStat = YES;
// options.lookahead_etree = NO;
// options.num_lookaheads = 10;
// options.superlu_acc_offload = 1;
// options.SymPattern = NO;
superlu_dist_options_t *options = (superlu_dist_options_t *)optionsPtr_;
set_default_options_dist(options);
#if SUPERLU_DIST_MAJOR_VERSION > 7 || \
@@ -472,6 +477,12 @@ void SuperLUSolver::SetFact(superlu::Fact fact)
options->Fact = opt;
}
void SuperLUSolver::SetDeviceOffload(bool offload)
{
superlu_dist_options_t *options = (superlu_dist_options_t *)optionsPtr_;
options->superlu_acc_offload = offload;
}
void SuperLUSolver::SetOperator(const Operator &op)
{
// Verify that we have a compatible operator
+6 -1
View File
@@ -250,7 +250,8 @@ public:
work (default false) */
void SetSymmetricPattern(bool sym);
/** @brief Specify whether to perform parallel symbolic factorization.
/** @brief Specify whether to perform parallel symbolic factorization
(default false)
@note If true SuperLU will use superlu::PARMETIS for the Column
Permutation regardless of the setting */
void SetParSymbFact(bool par);
@@ -263,6 +264,10 @@ public:
superlu::FACTORED*/
void SetFact(superlu::Fact fact);
/** @brief Specify whether to offload numerical factorization onto the device
(default true if SuperLU_DIST has been compiled with GPU support) */
void SetDeviceOffload(bool offload);
// Processor grid for SuperLU_DIST.
const int nprow_, npcol_, npdep_;
+2 -3
View File
@@ -126,11 +126,11 @@ EXAMPLE_TEST_DIRS := examples
MINIAPP_SUBDIRS = common electromagnetics meshing performance tools \
toys nurbs gslib adjoint solvers shifted mtop parelag tribol autodiff dfem \
hooke multidomain dpg hdiv-linear-solver spde diag-smoothers contact \
fluids/navier fluids/schrodinger-flow
fluids/navier fluids/schrodinger-flow plasma
MINIAPP_DIRS := $(addprefix miniapps/,$(MINIAPP_SUBDIRS))
MINIAPP_TEST_DIRS := $(filter-out %/common,$(MINIAPP_DIRS))
MINIAPP_USE_COMMON := $(addprefix miniapps/,electromagnetics meshing tools \
toys shifted dpg diag-smoothers fluids/navier)
toys shifted dpg diag-smoothers fluids/navier plasma)
EM_DIRS = $(EXAMPLE_DIRS) $(MINIAPP_DIRS)
@@ -794,7 +794,6 @@ status info:
$(info MFEM_MPI_NP = $(MFEM_MPI_NP))
@true
ASTYLE_BIN = astyle
ASTYLE = $(ASTYLE_BIN) --options=$(SRC)config/mfem.astylerc
ASTYLE_VER = "Artistic Style Version 3.1"
FORMAT_FILES = $(foreach dir,$(DIRS) $(EM_DIRS) config,$(dir)/*.?pp)
+58 -52
View File
@@ -493,8 +493,7 @@ void Mesh::GetBdrElementTransformation(int i,
{
for (int j = 0; j < n; j++)
{
int idx = vdofs[n*k+j];
pm(k,j) = nodes((idx<0)? -1-idx:idx);
pm(k,j) = nodes(UnsignIndex(vdofs[n*k+j]));
}
}
ElTr->SetFE(bdr_el);
@@ -1356,7 +1355,7 @@ Mesh::FaceInformation Mesh::GetFaceInformation(int f) const
face.element[0].conformity = ElementConformity::Coincident;
face.element[1].conformity = ElementConformity::Coincident;
face.element[1].location = ElementLocation::FaceNbr;
face.element[1].index = -1 - e2;
face.element[1].index = FlipIndexSign(e2);
face.element[1].orientation = inf2%64;
}
}
@@ -1379,7 +1378,7 @@ Mesh::FaceInformation Mesh::GetFaceInformation(int f) const
face.element[1].location = ElementLocation::FaceNbr;
face.element[0].conformity = ElementConformity::Coincident;
face.element[1].conformity = ElementConformity::Superset;
face.element[1].index = -1 - e2;
face.element[1].index = FlipIndexSign(e2);
face.element[1].orientation = inf2%64;
}
face.point_matrix = nc_faces_info[ncface].PointMatrix;
@@ -1405,7 +1404,7 @@ Mesh::FaceInformation Mesh::GetFaceInformation(int f) const
face.element[1].location = ElementLocation::FaceNbr;
face.element[0].conformity = ElementConformity::Superset;
face.element[1].conformity = ElementConformity::Coincident;
face.element[1].index = -1 - e2;
face.element[1].index = FlipIndexSign(e2);
face.element[1].orientation = inf2%64;
face.point_matrix = nc_faces_info[ncface].PointMatrix;
}
@@ -1438,7 +1437,7 @@ Mesh::FaceInformation::operator Mesh::FaceInfo() const
break;
case FaceInfoTag::SharedConforming:
res.Elem1No = element[0].index;
res.Elem2No = -1 - element[1].index;
res.Elem2No = FlipIndexSign(element[1].index);
res.Elem1Inf = element[0].orientation + element[0].local_face_id*64;
res.Elem2Inf = element[1].orientation + element[1].local_face_id*64;
break;
@@ -1448,7 +1447,7 @@ Mesh::FaceInformation::operator Mesh::FaceInfo() const
break;
case FaceInfoTag::SharedSlaveNonconforming:
res.Elem1No = element[0].index;
res.Elem2No = -1 - element[1].index;
res.Elem2No = FlipIndexSign(element[1].index);
res.Elem1Inf = element[0].orientation + element[0].local_face_id*64;
res.Elem2Inf = element[1].orientation + element[1].local_face_id*64;
break;
@@ -1456,7 +1455,7 @@ Mesh::FaceInformation::operator Mesh::FaceInfo() const
break;
case FaceInfoTag::GhostSlave:
res.Elem1No = element[0].index;
res.Elem2No = -1 - element[1].index;
res.Elem2No = FlipIndexSign(element[1].index);
res.Elem1Inf = element[0].orientation + element[0].local_face_id*64;
res.Elem2Inf = element[1].orientation + element[1].local_face_id*64;
break;
@@ -6514,7 +6513,7 @@ void Mesh::LoadPatchTopo(std::istream &input, Array<int> &edge_to_ukv)
input >> edge_to_ukv[j] >> v[0] >> v[1];
if (v[0] > v[1])
{
edge_to_ukv[j] = -1 - edge_to_ukv[j];
edge_to_ukv[j] = FlipIndexSign(edge_to_ukv[j]);
}
}
}
@@ -6551,9 +6550,6 @@ void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
const int NP = NumOfElements; // number of patches
const int NPKV = NP * dim; // number of patch knotvectors
constexpr int notset = -9999999;
// Sign convention
auto flipSign = [](int i) { return -1 - i; };
auto unSign = [](int i) { return (i < 0) ? -1 - i : i; };
// Local edge index -> dimension convention
auto edge_to_dim = [](int i) { return (i < 8) ? ((i & 1) ? 1 : 0) : 2; };
@@ -6569,7 +6565,7 @@ void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
{
GetElementVertices(i, v);
// Sign is based on the edge's vertex indices
edge_to_ukv[i] = (v[1] > v[0]) ? i : flipSign(i);
edge_to_ukv[i] = (v[1] > v[0]) ? i : FlipIndexSign(i);
ukv_to_rpkv[i] = i;
}
return;
@@ -6619,14 +6615,14 @@ void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
// We've set this edge already - link this index to it
if (edge_to_pkv[edge] != notset)
{
const int pkv_other = unSign(edge_to_pkv[edge]);
const int pkv_other = UnsignIndex(edge_to_pkv[edge]);
unite(pkv, pkv_other);
}
else
{
GetEdgeVertices(edge, v);
// Sign is based on the edge's vertex indices
edge_to_pkv[edge] = (v[1] > v[0]) ? pkv : flipSign(pkv);
edge_to_pkv[edge] = (v[1] > v[0]) ? pkv : FlipIndexSign(pkv);
}
}
}
@@ -6653,10 +6649,10 @@ void Mesh::GetEdgeToUniqueKnotvector(Array<int> &edge_to_ukv,
edge_to_ukv.SetSize(NumOfEdges);
for (int i = 0; i < NumOfEdges; i++)
{
const int pkv = unSign(edge_to_pkv[i]);
const int pkv = UnsignIndex(edge_to_pkv[i]);
const int rpkv = pkv_to_rpkv[pkv];
const int ukv = rpkv_to_ukv[rpkv];
edge_to_ukv[i] = (edge_to_pkv[i] < 0) ? flipSign(ukv) : ukv;
edge_to_ukv[i] = (edge_to_pkv[i] < 0) ? FlipIndexSign(ukv) : ukv;
}
CorrectPatchTopoOrientations(edge_to_ukv);
@@ -6667,9 +6663,6 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
const int dim = Dimension(); // Topological (not physical) dimension
if (dim == 1) { return; }
// Sign convention
auto flipSign = [](int i) { return -1 - i; };
const Table *face2elem = GetFaceToElementTable();
Array<int> pfaces, orient;
Array<int> fe, feo;
@@ -6688,7 +6681,7 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
for (auto e : fe)
{
const int skv = edge_to_ukv[e];
if (skv == kv || flipSign(skv) == kv) { hasKV = true; }
if (skv == kv || FlipIndexSign(skv) == kv) { hasKV = true; }
}
if (hasKV)
{
@@ -6718,7 +6711,7 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
};
}
Array<int> ukvs((dim==2) ? 4 : 12);
Array<int> ukvs((dim == 2) ? 4 : 12);
Array<int> pe, oe;
bool initKV = false;
@@ -6732,7 +6725,7 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
for (int i = 0; i < pe.Size(); i++)
{
ukvs[i] = edge_to_ukv[pe[i]];
ukvs[i] = (oe[i] < 0) ? flipSign(ukvs[i]) : ukvs[i];
ukvs[i] = (oe[i] < 0) ? FlipIndexSign(ukvs[i]) : ukvs[i];
}
// Find the direction with this kv.
@@ -6740,12 +6733,19 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
for (int d=0; d<dim; ++d) // Loop over directions.
{
const int skv = edge_to_ukv[pe[dir_edges[d][0]]];
if (skv == kv || flipSign(skv) == kv)
if (skv == kv || FlipIndexSign(skv) == kv)
{
thisDir = d;
for (auto e : dir_edges[d])
if (!edgeSet[pe[e]])
{
thisDir = d;
}
}
}
MFEM_VERIFY(thisDir >= 0, "");
if (thisDir == -1)
{
return false;
}
// For this direction, find any edge already set. If no edge is set, we
// arbitrarily take the first.
@@ -6777,12 +6777,12 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
}
const int edge = pe[i];
if ((dim == 2 && ukvs[i] != flipSign(ukvs[ref_edge0])) ||
(dim == 3 && ukvs[i] == flipSign(ukvs[ref_edge0])))
if ((dim == 2 && ukvs[i] != FlipIndexSign(ukvs[ref_edge0])) ||
(dim == 3 && ukvs[i] == FlipIndexSign(ukvs[ref_edge0])))
{
// Flip the sign of this edge
MFEM_VERIFY(!edgeSet[edge], "");
edge_to_ukv[edge] = flipSign(edge_to_ukv[edge]);
MFEM_ASSERT(!edgeSet[edge], "");
edge_to_ukv[edge] = FlipIndexSign(edge_to_ukv[edge]);
}
edgeSet[edge] = true;
@@ -6827,10 +6827,11 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
int unsetDim = -1;
for (int d=0; d<dim; ++d) // Loop over dimensions.
{
if (!edgeSet[pe[dir_edges[d][0]]])
{
unsetDim = d;
}
for (auto e : dir_edges[d])
if (!edgeSet[pe[e]])
{
unsetDim = d;
}
}
if (unsetDim == -1)
@@ -6839,9 +6840,7 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
continue;
}
const int kv_signed = edge_to_ukv[pe[dir_edges[unsetDim][0]]];
const int kv = kv_signed < 0 ? flipSign(kv_signed) : kv_signed;
MFEM_VERIFY(!edgeSet[pe[dir_edges[unsetDim][0]]], "");
const int kv = UnsignIndex(edge_to_ukv[pe[dir_edges[unsetDim][0]]]);
initKV = false;
@@ -6891,6 +6890,7 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
}
}
#ifdef MFEM_DEBUG
bool allSet = true;
for (auto eset : edgeSet)
{
@@ -6899,7 +6899,8 @@ void Mesh::CorrectPatchTopoOrientations(Array<int> &edge_to_ukv) const
allSet = false;
}
}
MFEM_VERIFY(allSet && unset.size() == 0, "Some edge is not set");
MFEM_ASSERT(allSet && unset.size() == 0, "Some edge is not set");
#endif
delete face2elem;
}
@@ -6941,7 +6942,7 @@ void Mesh::LoadNonconformingPatchTopo(std::istream &input,
if (v[0] > v[1])
{
ukv = -1 - ukv;
ukv = FlipIndexSign(ukv);
}
edge_to_ukv[j] = ukv;
}
@@ -12438,11 +12439,7 @@ void Mesh::PrintTopoEdges(std::ostream &os, const Array<int> &e_to_k,
for (int i = 0; i < NumOfEdges; i++)
{
edge_vertex->GetRow(i, vert);
int ki = e_to_k[i];
if (ki < 0)
{
ki = -1 - ki;
}
const int ki = UnsignIndex(e_to_k[i]);
if (vmap)
{
@@ -15751,9 +15748,18 @@ Mesh PartitionMPI(int dim, int mpi_cnt, int elem_per_mpi, bool print,
{
MFEM_VERIFY(dim > 1, "Not implemented for 1D meshes.");
auto factor = [&](int N)
// Closest int divisor to the cubit root, going down.
auto factor3 = [](int N)
{
for (int i = static_cast<int>(sqrt(N)); i > 0; i--)
for (int i = static_cast<int>(round(cbrt(N))); i > 0; i--)
{ if (N % i == 0) { return i; } }
return 1;
};
// Closest int divisor to the square root, going down.
auto factor2 = [](int N)
{
for (int i = static_cast<int>(round(sqrt(N))); i > 0; i--)
{ if (N % i == 0) { return i; } }
return 1;
};
@@ -15777,22 +15783,22 @@ Mesh PartitionMPI(int dim, int mpi_cnt, int elem_per_mpi, bool print,
int el0_x, el0_y, el0_z;
if (dim == 2)
{
mpi_x = factor(mpi_cnt);
mpi_x = factor2(mpi_cnt);
mpi_y = mpi_cnt / mpi_x;
// Switch order for better balance.
el0_y = factor(el0);
el0_y = factor2(el0);
el0_x = el0 / el0_y;
}
else
{
mpi_x = factor(mpi_cnt);
mpi_y = factor(mpi_cnt / mpi_x);
mpi_x = factor3(mpi_cnt);
mpi_y = factor2(mpi_cnt / mpi_x);
mpi_z = mpi_cnt / mpi_x / mpi_y;
// Switch order for better balance.
el0_z = factor(el0);
el0_y = factor(el0 / el0_z);
el0_z = factor3(el0);
el0_y = factor2(el0 / el0_z);
el0_x = el0 / el0_y / el0_z;
}
+15 -10
View File
@@ -2078,12 +2078,13 @@ public:
contrary to the ones obtained through Mesh::GetFacesElements and can
directly be used, e.g., Elem1 and Elem2 indices.
Likewise the orientations for Elem1 and Elem2 already take into account
special cases and can be used as is.
*/
special cases and can be used as is. */
struct FaceInformation
{
/// The face topology (boundary, conforming, or nonconforming).
FaceTopology topology;
/// Information about the adjacent elements.
struct
{
ElementLocation location;
@@ -2093,8 +2094,13 @@ public:
int orientation;
} element[2];
/// Detailed face information (see FaceInfoTag).
FaceInfoTag tag;
/// If the face is nonconforming, the index of the NC face. -1 otherwise.
int ncface;
/// The point matrix for nonconforming faces.
const DenseMatrix* point_matrix;
/** @brief Return true if the face is a local interior face which is NOT
@@ -2113,21 +2119,20 @@ public:
/** @brief return true if the face is an interior face to the computation
domain, either a local or shared interior face (not a boundary face)
which is NOT a master nonconforming face.
*/
which is NOT a master nonconforming face. */
bool IsInterior() const
{
return topology == FaceTopology::Conforming ||
topology == FaceTopology::Nonconforming;
}
/** @brief Return true if the face is a boundary face. */
/// Return true if the face is a boundary face.
bool IsBoundary() const
{
return topology == FaceTopology::Boundary;
}
/// @brief Return true if the face is of the same type as @a type.
/// Return true if the face is of the same type as @a type.
bool IsOfFaceType(FaceType type) const
{
switch (type)
@@ -2141,13 +2146,13 @@ public:
}
}
/// @brief Return true if the face is a conforming face.
/// Return true if the face is a conforming face.
bool IsConforming() const
{
return topology == FaceTopology::Conforming;
}
/// @brief Return true if the face is a nonconforming fine face.
/// Return true if the face is a nonconforming fine face.
bool IsNonconformingFine() const
{
return topology == FaceTopology::Nonconforming &&
@@ -2155,7 +2160,7 @@ public:
element[1].conformity == ElementConformity::Superset);
}
/// @brief Return true if the face is a nonconforming coarse face.
/// Return true if the face is a nonconforming coarse face.
/** Note that ghost nonconforming master faces cannot be clearly
identified as such with the currently available information, so this
method will return false for such faces. */
@@ -2165,7 +2170,7 @@ public:
element[1].conformity == ElementConformity::Subset;
}
/// @brief cast operator from FaceInformation to FaceInfo.
/// cast operator from FaceInformation to FaceInfo.
operator Mesh::FaceInfo() const;
};
+4 -4
View File
@@ -143,7 +143,7 @@ int ThresholdRefiner::ApplyImpl(Mesh &mesh)
if (num_marked_elements == 0LL) { return STOP; }
mesh.GeneralRefinement(marked_elements, non_conforming, nc_limit);
return CONTINUE + REFINED;
return static_cast<int>(CONTINUE) + static_cast<int>(REFINED);
}
void ThresholdRefiner::Reset()
@@ -162,7 +162,7 @@ int ThresholdDerefiner::ApplyImpl(Mesh &mesh)
const Vector &local_err = estimator.GetLocalErrors();
bool derefs = mesh.DerefineByError(local_err, threshold, nc_limit, op);
return derefs ? CONTINUE + DEREFINED : NONE;
return derefs ? static_cast<int>(CONTINUE) + static_cast<int>(DEREFINED) : NONE;
}
@@ -290,7 +290,7 @@ int CoefficientRefiner::PreprocessMesh(Mesh &mesh, int max_it)
}
delete l2fes;
delete gf;
return CONTINUE + REFINED;
return static_cast<int>(CONTINUE) + static_cast<int>(REFINED);
}
@@ -310,7 +310,7 @@ int Rebalancer::ApplyImpl(Mesh &mesh)
if (pmesh && pmesh->Nonconforming())
{
pmesh->Rebalance();
return CONTINUE + REBALANCED;
return static_cast<int>(CONTINUE) + static_cast<int>(REBALANCED);
}
#endif
return NONE;
+2 -2
View File
@@ -3542,7 +3542,7 @@ void NCMesh::TraverseQuadFace(int vn0, int vn1, int vn2, int vn3,
// create a slave face record with a degenerate point matrix
face_list.slaves.Append(
Slave(-1 - enode.edge_index,
Slave(FlipIndexSign(enode.edge_index),
eid[0].element, eid[0].local, Geometry::SQUARE));
Slave &sl = face_list.slaves.Last();
@@ -3589,7 +3589,7 @@ void NCMesh::TraverseTetEdge(int vn0, int vn1, const Point &p0, const Point &p1,
// non-slave edge is really a (face-)slave itself.
const MeshId &eid = *eid_and_type.id;
face_list.slaves.Append(
Slave(-1 - eid.index, eid.element, eid.local, Geometry::TRIANGLE));
Slave(FlipIndexSign(eid.index), eid.element, eid.local, Geometry::TRIANGLE));
int v0index = nodes[vn0].vert_index;
int v1index = nodes[vn1].vert_index;
+40 -44
View File
@@ -93,7 +93,7 @@ void NCNURBSExtension::GetMasterEdgeEntities(
}
else
{
const int auxEdge = -1 - edge_i;
const int auxEdge = FlipIndexSign(edge_i);
GetAuxEdgeVertices(auxEdge, sverts);
}
@@ -159,7 +159,7 @@ void NCNURBSExtension::FindAdditionalFacesSA(
{
if (edge < 0)
{
sideAuxEdges[s].Append(-1 - edge);
sideAuxEdges[s].Append(FlipIndexSign(edge));
}
else
{
@@ -456,7 +456,7 @@ void NCNURBSExtension::FindAdditionalFacesSA(
== afverts[j], "");
}
ori_f2 = -1 - ori_f2;
ori_f2 = FlipIndexSign(ori_f2);
}
else
{
@@ -468,7 +468,7 @@ void NCNURBSExtension::FindAdditionalFacesSA(
}
facePairs.emplace_back(FacePairInfo{fverts[vMinID], f,
SlaveFaceInfo{-1 - afid, ori_f2,
SlaveFaceInfo{FlipIndexSign(afid), ori_f2,
{fki(vMinID,0), fki(vMinID,1)},
{
fki((vMinID + 2) % 4,0) - fki(vMinID,0),
@@ -509,7 +509,7 @@ void NCNURBSExtension::FindAdditionalFacesSA(
auxFaces.push_back(auxFace);
facePairs.emplace_back(FacePairInfo{fverts[vMinID], f,
SlaveFaceInfo{-1 - auxFaceId, ori_f,
SlaveFaceInfo{FlipIndexSign(auxFaceId), ori_f,
{fki(vMinID,0), fki(vMinID,1)},
{
fki((vMinID + 2) % 4,0) - fki(vMinID,0),
@@ -622,7 +622,7 @@ void NCNURBSExtension::GetAuxFaceEdges(int auxFace, Array<int> &edges) const
}
else // Auxiliary edge
{
edges[i] = -1 - auxv2e.at(edge_v);
edges[i] = FlipIndexSign(auxv2e.at(edge_v));
}
}
}
@@ -633,7 +633,7 @@ int OffsetHelper(int i, int j, const Array<int> &a, const Array<int> &b)
{
if (i < 0)
{
return b[-1 - i + j];
return b[FlipIndexSign(i) + j];
}
else if (i + j < a.Size())
{
@@ -679,7 +679,7 @@ void NCNURBSExtension::GetMasterEdgeDofs(bool dof, int me,
}
else // Auxiliary edge
{
GetAuxEdgeVertices(-1 - slaveId, svert);
GetAuxEdgeVertices(FlipIndexSign(slaveId), svert);
}
bool reverse = false;
@@ -872,7 +872,7 @@ void ReorderArray2D(int i0, int j0, const Array2D<int> &a,
// Set a quadrilateral vertex index permutation for a given orientation.
void GetVertexOrdering(int ori, std::array<int, 4> &perm)
{
const int oriAbs = ori < 0 ? -1 - ori : ori;
const int oriAbs = UnsignIndex(ori);
for (int i=0; i<4; ++i)
{
@@ -1094,7 +1094,7 @@ void NCNURBSExtension::GetMasterFaceDofs(bool dof, int mf,
if (slaveId < 0)
{
// Auxiliary face
const int auxFace = -1 - slaveId;
const int auxFace = FlipIndexSign(slaveId);
// Set slave face entity dimensions.
if (dof)
@@ -1171,7 +1171,7 @@ void NCNURBSExtension::GetMasterFaceDofs(bool dof, int mf,
}
else
{
const int auxEdge = -1 - edge;
const int auxEdge = FlipIndexSign(edge);
GetAuxEdgeVertices(auxEdge, evert);
}
MFEM_ASSERT(evert[0] == vstart || evert[1] == vstart, "");
@@ -1184,7 +1184,7 @@ void NCNURBSExtension::GetMasterFaceDofs(bool dof, int mf,
// dimensions of the master face, by using ori.
int e1 = -1, e2 = -1;
{
const int aori = ori < 0 ? -1 - ori : ori;
const int aori = UnsignIndex(ori);
if (aori % 2 == 0)
{
e1 = 0;
@@ -1416,14 +1416,15 @@ void NCNURBSExtension::ProcessVertexToKnot2D(const VertexToKnotSpan &v2k,
{
// Create a new auxiliary edge
auxv2e[childPair] = auxEdges.size();
auxEdges.emplace_back(AuxiliaryEdge{pv[0] < pv[1] ?
parentEdge : -1 - parentEdge,
auxEdges.emplace_back(AuxiliaryEdge{pv[0] < pv[1] ? parentEdge :
FlipIndexSign(parentEdge),
{childPair.first, childPair.second},
{newParentEdge ? 0 : prevKI, ks}});
}
}
const int childEdge = childPairTopo ? v2e[childPair] : -1 - auxv2e[childPair];
const int childEdge = childPairTopo ? v2e[childPair] :
FlipIndexSign(auxv2e[childPair]);
// Check whether this is the final vertex in this parent edge. Note that
// the logic for comparing (pv[0],pv[1]) to the next parents assumes the
@@ -1460,14 +1461,15 @@ void NCNURBSExtension::ProcessVertexToKnot2D(const VertexToKnotSpan &v2k,
// -1 denotes `ne` at endpoint
auxEdges.emplace_back(AuxiliaryEdge{pv[0] < pv[1] ?
-1 - parentEdge : parentEdge,
FlipIndexSign(parentEdge) :
parentEdge,
{finalChildPair.first, finalChildPair.second},
{ks, -1}});
}
}
const int finalChildEdge = finalChildPairTopo ? v2e[finalChildPair] :
-1 - auxv2e[finalChildPair];
FlipIndexSign(auxv2e[finalChildPair]);
edgePairs.emplace_back(-1, -1, finalChildEdge, parentEdge);
}
@@ -1805,7 +1807,7 @@ void NCNURBSExtension::ProcessVertexToKnot3D(
auxFaces.push_back(auxFace);
facePairs.emplace_back(
FacePairInfo{cv[0], parentFace,
SlaveFaceInfo{-1 - auxv2f[childPair],
SlaveFaceInfo{FlipIndexSign(auxv2f[childPair]),
0, {i0, j0}, {d0, d1}}});
}
}
@@ -2111,7 +2113,7 @@ void NCNURBSExtension::ProcessVertexToKnot3D(
auxv2e[childPair] = auxEdges.size();
auxEdges.emplace_back(AuxiliaryEdge{pv0 < pv1 ?
parentEdge :
-1 - parentEdge,
FlipIndexSign(parentEdge),
{childPair.first, childPair.second},
{knotIndex0, knotIndex1}});
}
@@ -2131,7 +2133,8 @@ void NCNURBSExtension::ProcessVertexToKnot3D(
const EdgePairInfo ep_e((e_idx == n_d - de) ? -1 : tv,
(e_idx == n_d - de) ? -1 : tvki,
-1 - auxv2e[childPair], parentEdge);
FlipIndexSign(auxv2e[childPair]),
parentEdge);
const bool unset = !edgePairs[edgePairOS[parentEdge] + e_idx].isSet;
if (unset)
@@ -2226,7 +2229,7 @@ void NCNURBSExtension::GetAuxFaceToPatchTable(Array2D<int> &auxface2patch)
if (s < 0)
{
// Auxiliary face.
const int aux = -1 - s;
const int aux = FlipIndexSign(s);
if (auxface2patch(aux, 0) >= 0)
{
if (auxface2patch(aux, 1) != -1) { consistent = false; }
@@ -2316,7 +2319,7 @@ void NCNURBSExtension::UpdateAuxiliaryKnotSpans(const Array<int> &rf)
for (auto auxEdge : auxEdges)
{
const int p = auxEdge.parent;
const int parent = p < 0 ? -1 - p : p;
const int parent = UnsignIndex(p);
const int kv = KnotInd(parent);
for (int i=0; i<2; ++i)
{
@@ -2382,14 +2385,8 @@ int NCNURBSExtension::AuxiliaryEdgeNE(int aux_edge)
const int signedParentEdge = auxEdges[aux_edge].parent;
const int ki0 = auxEdges[aux_edge].ksi[0];
const int ki1raw = auxEdges[aux_edge].ksi[1];
int ki1 = ki1raw;
if (ki1raw == -1)
{
const bool rev = signedParentEdge < 0;
const int parentEdge = rev ? -1 - signedParentEdge : signedParentEdge;
ki1 = KnotVec(parentEdge)->GetNE();
}
const int ki1 = ki1raw == -1 ? KnotVec(UnsignIndex(signedParentEdge))->GetNE()
: ki1raw;
return ki1 - ki0;
}
@@ -2403,7 +2400,7 @@ void NCNURBSExtension::SlaveEdgeToParent(int se, int parent,
Array<int> sev(2);
if (se < 0) // Auxiliary edge
{
for (int i=0; i<2; ++i) { sev[i] = auxEdges[-1 - se].v[i]; }
for (int i=0; i<2; ++i) { sev[i] = auxEdges[FlipIndexSign(se)].v[i]; }
}
else
{
@@ -2459,7 +2456,7 @@ void NCNURBSExtension::GetMasterEdgePieceOffsets(int mid, Array<int> &os)
}
else
{
nes = AuxiliaryEdgeNE(-1 - s);
nes = AuxiliaryEdgeNE(FlipIndexSign(s));
}
os[i+1] = os[i] + nes;
@@ -2565,7 +2562,7 @@ int NCNURBSExtension::SetPatchFactors(int p)
}
else // Aux edge
{
const int aux_edge = -1 - s;
const int aux_edge = FlipIndexSign(s);
if (auxef[aux_edge].Size() == 0)
{
auxef[aux_edge].SetSize(AuxiliaryEdgeNE(aux_edge));
@@ -2611,7 +2608,7 @@ int NCNURBSExtension::SetPatchFactors(int p)
}
MFEM_VERIFY(consistent, "");
return partialChange ? -1 - dirSet : dirSet;
return partialChange ? FlipIndexSign(dirSet) : dirSet;
}
void NCNURBSExtension::PropagateFactorsForKV(int rf_default)
@@ -2715,7 +2712,7 @@ void NCNURBSExtension::PropagateFactorsForKV(int rf_default)
if (s < 0)
{
// Auxiliary face.
const int aux = -1 - s;
const int aux = FlipIndexSign(s);
for (int i=0; i<2; ++i)
{
const int patch = auxface2patch(aux, i);
@@ -2763,7 +2760,7 @@ void NCNURBSExtension::PropagateFactorsForKV(int rf_default)
const int dirSetSigned = SetPatchFactors(p);
const bool partialChange = dirSetSigned < 0;
const int dirSet = partialChange ? -1 - dirSetSigned : dirSetSigned;
const int dirSet = UnsignIndex(dirSetSigned);
const bool changed = (patchState[p] != dirSet) || partialChange;
patchState[p] = dirSet;
@@ -2806,8 +2803,8 @@ void NCNURBSExtension::PropagateFactorsForKV(int rf_default)
{
const int dirSetSigned_i = SetPatchFactors(i);
const bool partialChange_i = dirSetSigned_i < 0;
const int dirSet_i = partialChange_i ? -1 - dirSetSigned_i :
dirSetSigned_i;
const int dirSet_i = partialChange_i ?
FlipIndexSign(dirSetSigned_i) : dirSetSigned_i;
const bool changed_i = (patchState[i] != dirSet_i) ||
partialChange_i;
patchState[p] = dirSet_i;
@@ -3027,7 +3024,7 @@ int GetFaceOrientation(const Mesh *mesh, const int face,
// Check whether ordering is reversed.
const bool rev = verts[(s + 1) % 4] != fverts[1];
if (rev) { s = -1 - s; } // Reversed order is encoded by the sign.
if (rev) { s = FlipIndexSign(s); } // Reversed order is encoded by the sign.
return s;
}
@@ -3040,7 +3037,7 @@ int GetFaceOrientation(const Mesh *mesh, const int face,
// see GetFaceOrientation.
bool Reorder2D(int ori, std::array<int, 2> &s0)
{
const int shift = ori < 0 ? -1 - ori : ori;
const int shift = UnsignIndex(ori);
// Shift is an F1 index in the counter-clockwise ordering of 4 quad vertices.
// Now find the (i,j) indices of this index, with i,j in {0,1}.
@@ -3064,7 +3061,7 @@ void GetInverseShiftedDimensions2D(int signedShift, int sm, int sn, int &m,
int &n)
{
const bool rev = (signedShift < 0);
const int shift = rev ? -1 - signedShift : signedShift;
const int shift = UnsignIndex(signedShift);
MFEM_ASSERT(0 <= shift && shift < 4, "");
// We consider 8 cases for the possible values of rev and shift.
@@ -3136,7 +3133,7 @@ void GetShiftedGridPoints2D(int m, int n, int i, int j, int signedShift,
int& sm, int& sn, int& si, int& sj)
{
const bool rev = (signedShift < 0);
const int shift = rev ? -1 - signedShift : signedShift;
const int shift = UnsignIndex(signedShift);
MFEM_ASSERT(0 <= shift && shift < 4, "");
// (0,0) <= (i,j) < (m,n) are old indices, and old vertex [shift] maps
@@ -3798,8 +3795,7 @@ void NCNURBSExtension::GenerateOffsets()
const int signedParentEdge = auxEdges[e].parent;
const int ki0 = auxEdges[e].ksi[0];
const int ki1raw = auxEdges[e].ksi[1];
const bool rev = signedParentEdge < 0;
const int parentEdge = rev ? -1 - signedParentEdge : signedParentEdge;
const int parentEdge = UnsignIndex(signedParentEdge);
const int masterNE = KnotVec(parentEdge)->GetNE();
const int ki1 = ki1raw == -1 ? masterNE : ki1raw;
const int perEdgeCP = GetNCPperEdge(KnotVec(e));
+31 -18
View File
@@ -43,13 +43,30 @@ KnotVector::KnotVector(istream &input)
KnotVector::KnotVector(int order, int NCP)
{
if (NCP == -1)
{
NumOfControlPoints = order + 1;
}
else
{
NumOfControlPoints = NCP;
}
Order = order;
NumOfControlPoints = NCP;
knot.SetSize(NumOfControlPoints + Order + 1);
NumOfElements = 0;
coarse = false;
knot = -1.;
if (NCP == -1)
{
for (int i = 0 ; i < Order + 1; i++)
{
knot[i] = 0.0;
knot[i + Order + 1] = 1.0;
}
}
else
{
knot = -1.;
}
}
KnotVector::KnotVector(int order, const Vector &k)
@@ -3706,10 +3723,7 @@ bool NURBSExtension::CheckPatches()
for (int i = 0; i < edges.Size(); i++)
{
edges[i] = edge_to_ukv[edges[i]];
if (oedge[i] < 0)
{
edges[i] = -1 - edges[i];
}
if (oedge[i] < 0) { edges[i] = FlipIndexSign(edges[i]); }
}
// In 2d - opposite edges must be same knotvector with opposite sign.
@@ -3723,7 +3737,7 @@ bool NURBSExtension::CheckPatches()
// {7, 6}, {4, 7}, {0, 4}, {1, 5}, {2, 6}, {3, 7} for Geometry::CUBE in 3D
// See fem/geom.cpp for these definitions.
if ((dim == 2 &&
(edges[0] != -1 - edges[2] || edges[1] != -1 - edges[3])) ||
(edges[0] != FlipIndexSign(edges[2]) || edges[1] != FlipIndexSign(edges[3]))) ||
(dim == 3 &&
(edges[0] != edges[2] || edges[0] != edges[4] ||
@@ -3752,7 +3766,7 @@ void NURBSExtension::CheckBdrPatches()
edges[i] = edge_to_ukv[edges[i]];
if (oedge[i] < 0)
{
edges[i] = -1 - edges[i];
edges[i] = FlipIndexSign(edges[i]);
}
}
@@ -4749,14 +4763,13 @@ void NURBSExtension::GenerateBdrElementDofTable()
SetPatchToBdrElements();
int *dof = bel_dof->GetJ();
int ndof = bel_dof->Size_of_connections();
const int ndof = bel_dof->Size_of_connections();
for (int i = 0; i < ndof; i++)
{
int idx = dof[i];
const int idx = dof[i];
if (idx < 0)
{
dof[i] = -1 - (activeDof[-1-idx] - 1);
dof[i] = -activeDof[-1-idx];
dof[i] = -activeDof[FlipIndexSign(idx)];
}
else
{
@@ -4841,12 +4854,12 @@ void NURBSExtension::Generate2DBdrElementDofTable()
for (int ii = 0; ii <= ord0; ii++)
{
conn.to = DofMap(p2g[(okv[0] >= 0) ? (i+ii) : (nx-i-ii)]);
if (s == -1) { conn.to = -1 -conn.to; }
if (s == -1) { conn.to = FlipIndexSign(conn.to); }
bel_dof_list.Append(conn);
}
}
bel_to_patch[lbe] = b;
bel_to_IJK(lbe,0) = (okv[0] >= 0) ? i : (-1-i);
bel_to_IJK(lbe,0) = (okv[0] >= 0) ? i : FlipIndexSign(i);
lbe++;
}
gbe++;
@@ -4919,14 +4932,14 @@ void NURBSExtension::Generate3DBdrElementDofTable()
{
const int ii_ = (okv[0] >= 0) ? (i+ii) : (nx-i-ii);
conn.to = DofMap(p2g(ii_, jj_));
if (s == -1) { conn.to = -1 -conn.to; }
if (s == -1) { conn.to = FlipIndexSign(conn.to); }
bel_dof_list.Append(conn);
}
}
}
bel_to_patch[lbe] = b;
bel_to_IJK(lbe,0) = (okv[0] >= 0) ? i : (-1-i);
bel_to_IJK(lbe,1) = (okv[1] >= 0) ? j : (-1-j);
bel_to_IJK(lbe,0) = (okv[0] >= 0) ? i : FlipIndexSign(i);
bel_to_IJK(lbe,1) = (okv[1] >= 0) ? j : FlipIndexSign(j);
lbe++;
}
gbe++;
+11 -10
View File
@@ -74,9 +74,13 @@ public:
integers are read, for order and number of control points. */
KnotVector(std::istream &input);
/** @brief Create a KnotVector with undefined knots (initialized to -1) of
order @a order and number of control points @a NCP. */
KnotVector(int order, int NCP);
/** @brief Create a KnotVector with order @a order.
When @a NCP is not provided the number of control points is set to
@a order + 1, and the first @a order + 1 knots are set to 0 and last
@a order + 1 knots are set to 1.
When @a NCP is given number of control points is @a NCP and
the knots are initialized to -1) */
KnotVector(int order, int NCP = -1);
/** @brief Create a KnotVector with order @a order and knots @a knot.
If @a k has the correct number of repeated knots at the begin and end,
@@ -88,12 +92,10 @@ public:
/** @brief Create a KnotVector by passing in a degree, a Vector of interval
lengths of length n, and a list of continuity of length n + 1.
The intervals refer to spans between unique knot values (not counting
zero-size intervals at repeated knots), and the continuity values should
be >= -1 (discontinuous) and <= order-1 (maximally-smooth for the given
polynomial degree). Periodicity is not supported.
*/
polynomial degree). Periodicity is not supported.*/
KnotVector(int order, const Vector& intervals,
const Array<int>& continuity);
@@ -218,7 +220,7 @@ public:
@a u.
The main purpose of this function is its use in FindInterpolant.
Use GetBotella instead for each shape function separately, perhaps in
conjuction with GetSpan and GetRefPoint.*/
conjunction with GetSpan and GetRefPoint.*/
MFEM_DEPRECATED void FindMaxima(Array<int> &ks, Vector &xi, Vector &u) const;
/** @brief Global curve interpolation through the points @a x (overwritten).
@@ -1396,8 +1398,7 @@ inline const real_t &NURBSPatch::operator()(int i, int j, int k, int l) const
inline int NURBSExtension::KnotInd(int edge) const
{
const int kv = edge_to_ukv[edge];
return kv >= 0 ? kv : -1 - kv;
return UnsignIndex(edge_to_ukv[edge]);
}
inline int NURBSExtension::KnotSign(int edge) const
@@ -1427,7 +1428,7 @@ const
else
{
*okv = -oedge;
return knotVectors[-1-kv];
return knotVectors[FlipIndexSign(kv)];
}
}
+8 -9
View File
@@ -400,7 +400,7 @@ void ParNCMesh::MakeSharedList(const NCList &list, NCList &shared)
}
else // special case: prism edge-face constraint
{
if (entity_owner[1][-1-si] != MyRank)
if (entity_owner[1][FlipIndexSign(si)] != MyRank)
{
master_flag |= 0x2;
}
@@ -571,9 +571,10 @@ void ParNCMesh::CalculatePMatrixGroups()
ranks.SetSize(0);
for (int j = master_face.slaves_begin; j < master_face.slaves_end; j++)
{
int si = face_list.slaves[j].index;
int owner = (si >= 0) ? entity_owner[2][si] // standard face dependency
/* */ : entity_owner[1][-1 - si]; // prism edge-face dep
const int si = face_list.slaves[j].index;
const int owner =
(si >= 0) ? entity_owner[2][si] : // standard face dependency
entity_owner[1][FlipIndexSign(si)]; // prism edge-face dep
ranks.Append(groups[owner][0]);
}
ranks.Sort();
@@ -1181,7 +1182,7 @@ void ParNCMesh::GetFaceNeighbors(ParMesh &pmesh)
if (e[0]->rank == MyRank) { std::swap(e[0], e[1]); }
Mesh::FaceInfo &fi = pmesh.faces_info[cf.index];
fi.Elem2No = -1 - fnbr_index[e[0]->index - NElements];
fi.Elem2No = FlipIndexSign(fnbr_index[e[0]->index - NElements]);
if (Dim == 3)
{
@@ -1211,7 +1212,6 @@ void ParNCMesh::GetFaceNeighbors(ParMesh &pmesh)
if (Dim <= 2) { nfaces = NEdges, nghosts = NGhostEdges; }
// enlarge Mesh::faces_info for ghost slaves
MFEM_ASSERT(pmesh.faces_info.Size() == nfaces, "");
MFEM_ASSERT(pmesh.GetNumFaces() == nfaces, "");
pmesh.faces_info.SetSize(nfaces + nghosts);
for (int i = nfaces; i < pmesh.faces_info.Size(); i++)
@@ -1271,7 +1271,7 @@ void ParNCMesh::GetFaceNeighbors(ParMesh &pmesh)
// In other words, side 1 IS the side that generated the face.
}
MFEM_ASSERT(fi.Elem2No >= NElements, "");
fi.Elem2No = -1 - fnbr_index[fi.Elem2No - NElements];
fi.Elem2No = FlipIndexSign(fnbr_index[fi.Elem2No - NElements]);
const DenseMatrix* pm = full_list.point_matrices[sf.geom][sf.matrix];
if (!sloc && Dim == 3)
@@ -1312,7 +1312,6 @@ void ParNCMesh::GetFaceNeighbors(ParMesh &pmesh)
// Mesh::ApplyLocalSlaveTransformation.
}
MFEM_ASSERT(fi.NCFace < 0, "fi.NCFace = " << fi.NCFace);
fi.NCFace = pmesh.nc_faces_info.Size();
pmesh.nc_faces_info.Append(Mesh::NCFaceInfo(true, sf.master, pm));
}
@@ -2288,7 +2287,7 @@ void ParNCMesh::Derefine(const Array<int> &derefs)
if (element_type[index] == 0)
{
// this coarse element will get pruned, encode who owns it now
index = -1 - elements[coarse[i]].rank;
index = FlipIndexSign(elements[coarse[i]].rank);
}
transforms.embeddings[i].parent = index;
}
+1
View File
@@ -35,6 +35,7 @@ add_subdirectory(multidomain)
add_subdirectory(nurbs)
add_subdirectory(parelag)
add_subdirectory(performance)
add_subdirectory(plasma)
add_subdirectory(shifted)
add_subdirectory(solvers)
add_subdirectory(spde)
+109 -9
View File
@@ -174,7 +174,6 @@ ParticleTrajectories::ParticleTrajectories(const ParticleSet &particles,
void ParticleTrajectories::AddSegmentStart()
{
if (!pset.GetNParticles()) { return; }
// Create a new mesh for all particle segments for this timestep
segment_meshes.emplace_front(1, pset.GetNParticles()*2,
pset.GetNParticles(),
@@ -200,11 +199,10 @@ void ParticleTrajectories::AddSegmentStart()
void ParticleTrajectories::SetSegmentEnd()
{
if (segment_meshes.empty()) { return; } // no segments to end
const Array<ParticleSet::IDType> &end_ids = pset.GetIDs();
// Add all endpoint vertices + segments for all particles
// Add all endpoint vertices + segments for all particles that were in
// SetSegmentStart
int num_start = segment_ids.front().Size();
for (int i = 0; i < num_start; i++)
{
@@ -230,11 +228,6 @@ void ParticleTrajectories::SetSegmentEnd()
void ParticleTrajectories::Visualize()
{
SetSegmentEnd();
if (segment_meshes.empty() && !mesh)
{
AddSegmentStart();
return;
}
// Create a mesh of all the trajectory segments
std::vector<Mesh*> all_meshes;
@@ -246,8 +239,23 @@ void ParticleTrajectories::Visualize()
{
all_meshes.push_back(mesh);
}
if (mesh_bb)
{
all_meshes.push_back(mesh_bb);
}
Mesh trajectories(all_meshes.data(), all_meshes.size());
bool vis = trajectories.GetNE() > 0;
#ifdef MFEM_USE_MPI
MPI_Allreduce(MPI_IN_PLACE, &vis, 1, MFEM_MPI_CXX_BOOL,
MPI_LOR, pset.GetComm());
#endif // MFEM_USE_MPI
if (!vis) // if all rank have 0 elements, skip visualization
{
AddSegmentStart();
return;
}
#ifdef MFEM_USE_MPI
VisualizeMesh(sock, vishost, visport, trajectories, comm,
@@ -260,5 +268,97 @@ void ParticleTrajectories::Visualize()
AddSegmentStart();
}
void ParticleTrajectories::SetVisualizationBoundingBox(const Vector &xmin,
const Vector &xmax)
{
MFEM_VERIFY(xmin.Size() == pset.GetDim() &&
xmax.Size() == pset.GetDim(),
"Bounding box dimension must match ParticleSet dimension.");
// Create a box mesh for visualization
if (mesh_bb)
{
delete mesh_bb;
mesh_bb = nullptr;
}
if (pset.GetDim() == 2)
{
int dim = 2;
int nvert = 4;
int nelem = 4;
mesh_bb = new Mesh(1, nvert, nelem, 0, dim);
Vector v0(dim), v1(dim), v2(dim), v3(dim);
v0 = xmin;
v1 = xmax;
v2[0] = xmax[0]; v2[1] = xmin[1];
v3[0] = xmin[0]; v3[1] = xmax[1];
mesh_bb->AddVertex(v0);
mesh_bb->AddVertex(v1);
mesh_bb->AddVertex(v2);
mesh_bb->AddVertex(v3);
int vi[2] = {0,1};
mesh_bb->AddSegment(vi);
vi[0] = 1; vi[1] = 2;
mesh_bb->AddSegment(vi);
vi[0] = 2; vi[1] = 3;
mesh_bb->AddSegment(vi);
vi[0] = 3; vi[1] = 0;
mesh_bb->AddSegment(vi);
mesh_bb->FinalizeMesh();
}
else // dim == 3
{
int dim = 3;
int nvert = 8;
int nelem = 12;
mesh_bb = new Mesh(1, nvert, nelem, 0, dim);
Vector v(dim);
// Vertices
v[0] = xmin[0]; v[1] = xmin[1]; v[2] = xmin[2];
mesh_bb->AddVertex(v); // 0: 000
v[0] = xmax[0]; v[1] = xmin[1]; v[2] = xmin[2];
mesh_bb->AddVertex(v); // 1: 100
v[0] = xmax[0]; v[1] = xmax[1]; v[2] = xmin[2];
mesh_bb->AddVertex(v); // 2: 110
v[0] = xmin[0]; v[1] = xmax[1]; v[2] = xmin[2];
mesh_bb->AddVertex(v); // 3: 010
v[0] = xmin[0]; v[1] = xmin[1]; v[2] = xmax[2];
mesh_bb->AddVertex(v); // 4: 001
v[0] = xmax[0]; v[1] = xmin[1]; v[2] = xmax[2];
mesh_bb->AddVertex(v); // 5: 101
v[0] = xmax[0]; v[1] = xmax[1]; v[2] = xmax[2];
mesh_bb->AddVertex(v); // 6: 111
v[0] = xmin[0]; v[1] = xmax[1]; v[2] = xmax[2];
mesh_bb->AddVertex(v); // 7: 011
// Segments
int vi[2];
// Bottom face
vi[0] = 0; vi[1] = 1; mesh_bb->AddSegment(vi);
vi[0] = 1; vi[1] = 2; mesh_bb->AddSegment(vi);
vi[0] = 2; vi[1] = 3; mesh_bb->AddSegment(vi);
vi[0] = 3; vi[1] = 0; mesh_bb->AddSegment(vi);
// Top face
vi[0] = 4; vi[1] = 5; mesh_bb->AddSegment(vi);
vi[0] = 5; vi[1] = 6; mesh_bb->AddSegment(vi);
vi[0] = 6; vi[1] = 7; mesh_bb->AddSegment(vi);
vi[0] = 7; vi[1] = 4; mesh_bb->AddSegment(vi);
// Vertical edges
vi[0] = 0; vi[1] = 4; mesh_bb->AddSegment(vi);
vi[0] = 1; vi[1] = 5; mesh_bb->AddSegment(vi);
vi[0] = 2; vi[1] = 6; mesh_bb->AddSegment(vi);
vi[0] = 3; vi[1] = 7; mesh_bb->AddSegment(vi);
mesh_bb->FinalizeMesh();
}
}
} // namespace common
} // namespace mfem
+17 -2
View File
@@ -46,7 +46,8 @@ class ParticleTrajectories
{
protected:
const ParticleSet &pset;
Mesh *mesh = nullptr;
Mesh *mesh = nullptr; // optional edge mesh to visualize along with particles
Mesh *mesh_bb = nullptr; // optional bounding box mesh for visualization
socketstream sock;
/// Track particle IDs that exist at the segment start.
@@ -90,10 +91,24 @@ public:
const char *keys_=nullptr);
/// Add a mesh to be visualized along with the particle trajectories.
void AddMeshForVisualization(Mesh *mesh_) { mesh = mesh_; }
void AddMeshForVisualization(Mesh *mesh_)
{
MFEM_VERIFY(mesh_->Dimension() == 1,
"Mesh dimension must be 1 to match the particle trajectory.");
mesh = mesh_;
}
/// Visualize the particle trajectories (and mesh if provided).
void Visualize();
/// Set the bounding box for visualization.
void SetVisualizationBoundingBox(const Vector &xmin, const Vector &xmax);
/// Destructor
~ParticleTrajectories()
{
delete mesh_bb;
}
};
+7 -5
View File
@@ -34,11 +34,13 @@ if (MFEM_USE_MPI)
EXTRA_HEADERS maxwell_solver.hpp ${MFEM_MINIAPPS_COMMON_HEADERS}
LIBRARIES mfem-common)
add_mfem_miniapp(lorentz
MAIN lorentz.cpp
EXTRA_HEADERS ${MFEM_MINIAPPS_COMMON_HEADERS}
LIBRARIES mfem-common)
if (MFEM_USE_GSLIB)
add_mfem_miniapp(lorentz
MAIN lorentz.cpp
EXTRA_HEADERS ${MFEM_MINIAPPS_COMMON_HEADERS}
LIBRARIES mfem-common)
endif()
# Add the corresponding tests to the "test" target
if (MFEM_ENABLE_TESTING)
add_test(NAME tesla_np=4
File diff suppressed because it is too large Load Diff
+8 -3
View File
@@ -21,7 +21,10 @@ MFEM_LIB_FILE = mfem_is_not_built
-include $(CONFIG_MK)
SEQ_MINIAPPS =
PAR_MINIAPPS = volta tesla maxwell joule lorentz
PAR_MINIAPPS = volta tesla maxwell joule
ifeq ($(MFEM_USE_GSLIB), YES)
PAR_MINIAPPS += lorentz
endif
ifeq ($(MFEM_USE_MPI),NO)
MINIAPPS = $(SEQ_MINIAPPS)
else
@@ -51,9 +54,11 @@ all: $(MINIAPPS)
$(MFEM_CXX) $(MFEM_LINK_FLAGS) -o $@ $@.o $@_solver.o $(COMMON_LIB) \
$(MFEM_LIBS)
ifeq ($(MFEM_USE_MPI),YES)
lorentz: %: $(SRC)%.cpp $(MFEM_LIB_FILE) $(CONFIG_MK) | lib-common
$(MFEM_CXX) $(MFEM_FLAGS) -c $(<)
$(MFEM_CXX) $(MFEM_LINK_FLAGS) -o $@ $@.o $(COMMON_LIB) $(MFEM_LIBS)
endif
# Rules for compiling miniapp dependencies
$(addsuffix _solver.o,$(MINIAPPS)): \
@@ -112,10 +117,10 @@ joule-test-par: joule
lorentz-test-par: lorentz-test-1 lorentz-test-2
lorentz-test-1: lorentz volta-test-3
@$(call mfem-test,$<, $(RUN_MPI), Electromagnetic miniapp,\
-er Volta-AMR-Parallel -ec 2 -x0 '0.5 0.5 0.9' -p0 '1 0 0')
-er Volta-AMR-Parallel -ec 2 -npt 100 -xmin '0.0 0.0 0.0' -xmax '1.0 1.0 1.0' -pmin '1 0 0' -pmax '1 0 0' -rdf 0 -vt 0 -nt 100')
lorentz-test-2: lorentz tesla-test-2
@$(call mfem-test,$<, $(RUN_MPI), Electromagnetic miniapp,\
-br Tesla-AMR-Parallel -bc 2 -x0 '0.1 0.5 0.1' -p0 '0 0.4 0.1' -tf 9)
-br Tesla-AMR-Parallel -bc 2 -br Tesla-AMR-Parallel -npt 10 -xmin '0.0 0.0 0.0' -xmax '1.0 1.0 1.0' -pmin '0 0.1 0.05' -pmax '0 0.4 0.1' -nt 1000 -rdf 0 -vt 0)
# Testing: "test" target and mfem-test* variables are defined in config/test.mk
+4 -8
View File
@@ -421,22 +421,18 @@ void NavierParticles::Step(const real_t dt, const ParGridFunction &u_gf,
void NavierParticles::InterpolateUW(const ParGridFunction &u_gf,
const ParGridFunction &w_gf)
{
finder.FindPoints(X(), X().GetOrdering());
finder.FindPoints(X());
finder.Interpolate(u_gf, U());
Ordering::Reorder(U(), U().GetVDim(), u_gf.ParFESpace()->GetOrdering(),
U().GetOrdering());
finder.Interpolate(u_gf, U(), U().GetOrdering());
finder.Interpolate(w_gf, W());
Ordering::Reorder(W(), W().GetVDim(), w_gf.ParFESpace()->GetOrdering(),
W().GetOrdering());
finder.Interpolate(w_gf, W(), W().GetOrdering());
}
void NavierParticles::DeactivateLostParticles(bool findpts)
{
if (findpts)
{
finder.FindPoints(X(), X().GetOrdering());
finder.FindPoints(X());
}
const Array<unsigned int> lost_idxs = finder.GetPointsNotFoundIndices();
@@ -0,0 +1,489 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
3
elements
1
1 5 0 1 2 3 4 5 6 7
boundary
6
1 3 2 1 0 3
1 3 4 5 6 7
1 3 0 1 5 4
1 3 1 2 6 5
1 3 2 3 7 6
1 3 3 0 4 7
edges
12
0 0 1
0 3 2
0 4 5
0 7 6
1 0 3
1 1 2
1 4 7
1 5 6
2 0 4
2 1 5
2 2 6
2 3 7
vertices
8
knotvectors
3
2 6 0 0 0 0.25 0.5 0.75 1 1 1
2 6 0 0 0 0.25 0.5 0.75 1 1 1
2 6 0 0 0 0.25 0.5 0.75 1 1 1
weights
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
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1
1
1
1
1
1
1
1
1
1
1
1
1
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1
1
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1
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1
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1
1
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1
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1
1
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1
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1
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1
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1
1
1
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1
1
1
1
1
1
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1
1
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1
1
1
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1
1
1
1
1
1
1
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1
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1
1
1
1
1
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1
1
1
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1
1
1
1
1
1
1
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1
1
1
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1
1
1
1
1
1
1
1
1
1
1
1
1
1
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1
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1
1
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1
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1
FiniteElementSpace
FiniteElementCollection: NURBS2
VDim: 3
Ordering: 1
0.0116849 0.100677 0.107741
0.700841 0.44147 0.344065
0.437989 1.28285 0.264685
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0.0653891 1.28559 1.09951
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0.675777 0.435988 0.449458
0.610746 0.444971 0.684641
0.542159 0.473619 0.947334
0.451733 0.481779 1.235
0.387085 1.30441 0.330155
0.300155 1.32346 0.502159
0.197236 1.33735 0.733646
0.0778968 1.38129 0.967056
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0.427183 0.403976 0.895618
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0.136671 0.264444 1.03878
0.346957 0.403474 1.16556
0.652713 0.556232 0.447968
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0.516989 1.00686 0.408826
0.435038 1.2089 0.363187
0.570735 0.56432 0.677065
0.500648 0.786806 0.651401
0.416515 1.01355 0.598304
0.325952 1.21023 0.541362
0.493342 0.572126 0.917974
0.405211 0.78473 0.869844
0.312137 1.00883 0.809381
0.239854 1.22498 0.760211
0.407138 0.581025 1.17298
0.318312 0.777059 1.09777
0.225803 1.01555 1.0397
0.121726 1.25049 0.981676
0.290702 1.25013 0.278809
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0.271456 0.388643 0.569286
0.47429 0.500746 0.649904
-0.214578 0.415337 0.300568
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0.191156 0.607363 0.514446
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-0.192006 0.963536 0.318999
0.024575 1.07461 0.420919
0.234314 1.16838 0.513436
-0.239144 0.176376 0.576763
-0.0256959 0.27234 0.678898
0.180326 0.386088 0.77861
0.380616 0.507244 0.864894
-0.336051 0.4068 0.522487
-0.134268 0.49507 0.619439
0.0937046 0.598445 0.720534
0.295642 0.716778 0.815371
-0.413699 0.644524 0.471466
-0.217717 0.723955 0.573321
0.00422339 0.839902 0.669769
0.207017 0.943147 0.772738
-0.496887 0.853244 0.456225
-0.291644 0.956378 0.557542
-0.0924407 1.0788 0.643644
0.1296 1.17577 0.725705
-0.366417 0.168186 0.785706
-0.121768 0.262554 0.893007
0.083928 0.379718 1.0059
0.297426 0.504658 1.11483
-0.443726 0.407516 0.735498
-0.240641 0.495966 0.83729
-0.0238202 0.596216 0.939116
0.203993 0.722308 1.04178
-0.524688 0.636263 0.710265
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0.103953 0.951344 0.987382
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-0.195503 1.08864 0.858335
0.0177754 1.19986 0.938708
@@ -0,0 +1,118 @@
MFEM NURBS mesh v1.0
#
# MFEM Geometry Types (see fem/geom.hpp):
#
# SEGMENT = 1
# SQUARE = 3
# CUBE = 5
#
dimension
2
elements
1
1 3 0 1 2 3
boundary
4
1 1 0 1
2 1 2 3
3 1 3 0
4 1 1 2
edges
4
0 0 1
0 3 2
1 0 3
1 1 2
vertices
4
knotvectors
2
2 6 0 0 0 0.25 0.5 0.75 1 1 1
2 6 0 0 0 0.25 0.5 0.75 1 1 1
weights
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
FiniteElementSpace
FiniteElementCollection: NURBS2
VDim: 2
Ordering: 1
0.0163925 0.141238
0.774637 0.626247
-0.147699 1.3396
-0.757759 0.550541
0.121943 0.231571
0.272418 0.394336
0.420152 0.532036
0.635666 0.624585
-0.261202 1.30275
-0.454309 1.14438
-0.593397 0.942458
-0.710473 0.706781
-0.111803 0.190859
-0.313132 0.306672
-0.51706 0.436229
-0.67826 0.509765
0.608023 0.786507
0.372822 1.01006
0.159851 1.1653
-0.0696727 1.29923
-0.00322359 0.290759
0.158563 0.459956
0.321006 0.615434
0.509901 0.715169
-0.240232 0.408664
-0.0626107 0.581669
0.136422 0.738867
0.308415 0.910906
-0.452041 0.542364
-0.263077 0.727566
-0.0801052 0.906599
0.0851199 1.07157
-0.624784 0.659372
-0.470927 0.866487
-0.318204 1.05325
-0.134756 1.23187
+16 -3
View File
@@ -18,6 +18,10 @@
// nurbs_ex1 -m meshes/two-cubes-nurbs-rot.mesh -o 1 -r 3 -rf meshes/two-cubes.ref
// nurbs_ex1 -m meshes/two-cubes-nurbs-autoedge.mesh -o 1 -r 3 -rf meshes/two-cubes.ref
// nurbs_ex1 -m ../../data/segment-nurbs.mesh -r 2 -o 2 -lod 3
// nurbs_ex1 -m meshes/square-nurbs-deformed.mesh -o 2
// nurbs_ex1 -m meshes/square-nurbs-deformed.mesh -o 2 -no-ibp
// nurbs_ex1 -m meshes/cube-nurbs-deformed.mesh -o 2
// nurbs_ex1 -m meshes/cube-nurbs-deformed.mesh -o 2 -no-ibp
//
// Description: This example code demonstrates the use of MFEM to define a
// simple finite element discretization of the Poisson problem
@@ -553,9 +557,18 @@ int main(int argc, char *argv[])
}
// 14. Save data in the VisIt format
VisItDataCollection visit_dc("Example1", mesh);
visit_dc.RegisterField("solution", &x);
visit_dc.Save();
if (ibp)
{
VisItDataCollection visit_dc("Example1", mesh);
visit_dc.RegisterField("solution", &x);
visit_dc.Save();
}
else
{
VisItDataCollection visit_dc("Example1_nibp", mesh);
visit_dc.RegisterField("solution", &x);
visit_dc.Save();
}
// 15. Free the used memory.
delete a;
+1 -1
View File
@@ -264,7 +264,7 @@ int main(int argc, char *argv[])
// parallel degrees of freedom, with offsets given by array true_offset.
FiniteElementCollection *fec = nullptr;
NURBSExtension *NURBSext = nullptr;
if (mesh->NURBSext)
if (pmesh->NURBSext)
{
NURBSext = new NURBSExtension(pmesh->NURBSext, order);
fec = new NURBSFECollection(order);

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